Peak file = 0010.bed Genome = hg19 Organism = human Peak/BED file conversion summary: BED/Header formatted lines: 1768 peakfile formatted lines: 0 Duplicated Peak IDs: 0 Peak File Statistics: Total Peaks: 1768 Redundant Peak IDs: 0 Peaks lacking information: 0 (need at least 5 columns per peak) Peaks with misformatted coordinates: 0 (should be integer) Peaks with misformatted strand: 0 (should be either +/- or 0/1) Peak file looks good! Reading Positions... ----------------------- Finding Closest TSS... Annotating:........................ Annotation Number of peaks Total size (bp) Log2 Enrichment 3UTR 1.0 21942417 -3.636 miRNA 0.0 48690 -10.775 ncRNA 1.0 5144737 -1.543 TTS 10.0 28099294 -0.671 pseudo 0.0 1853996 -10.775 Exon 7.0 34376117 -1.476 Intron 698.0 1194604745 0.045 Intergenic 996.0 1772914566 -0.012 Promoter 38.0 31334283 1.098 5UTR 1.0 2504844 -0.505 snoRNA 0.0 119 -10.775 snRNA 0.0 105 -10.775 NOTE: If this part takes more than 2 minutes, there is a good chance your machine ran out of memory: consider hitting ctrl+C and rerunning the command with "-noann" To capture annotation stats in a file, use "-annStats " next time Annotating:................................. Annotation Number of peaks Total size (bp) Log2 Enrichment 3UTR 1.0 21942417 -3.647 Other 50.0 3960402 4.467 Unknown? 0.0 18108 -10.788 RNA 0.0 115354 -10.788 miRNA 0.0 48690 -10.788 ncRNA 1.0 5144737 -1.555 TTS 10.0 28099294 -0.682 LINE 480.0 624886084 0.428 LINE? 0.0 10448 -10.788 srpRNA 0.0 254885 -10.788 SINE 862.0 381123475 1.986 RC 0.0 443678 -10.788 tRNA 0.0 92966 -10.788 DNA? 1.0 265124 2.724 pseudo 0.0 1853996 -10.788 DNA 0.0 96191555 -10.788 Exon 7.0 34376117 -1.488 Intron 28.0 634266076 -3.693 Intergenic 32.0 904104452 -4.012 Promoter 38.0 31334283 1.087 5UTR 1.0 2504844 -0.516 snoRNA 0.0 119 -10.788 LTR? 0.0 21177 -10.788 scRNA 0.0 116795 -10.788 CpG-Island 18.0 9361597 1.752 Low_complexity 15.0 15509471 0.760 LTR 12.0 260500555 -3.632 Simple_repeat 60.0 24943670 2.075 snRNA 0.0 322925 -10.788 Unknown 0.0 1252510 -10.788 SINE? 0.0 43068 -10.788 Satellite 151.0 12871272 4.361 rRNA 1.0 166478 3.395 Counting Tags in Peaks from each directory... Organism: human Loading Gene Informaiton... Outputing Annotation File... PeakID (cmd=annotatePeaks.pl 0010.bed hg19) Chr Start End Strand Peak Score Focus Ratio/Region Size Annotation Detailed Annotation Distance to TSS Nearest PromoterID Entrez ID Nearest Unigene Nearest Refseq Nearest Ensembl Gene Name Gene Alias Gene Description Gene Type 16-PTNLD14-TUMOR_peak_18042 chr6 834349 834434 + 37.28146 NA Intergenic (TTCC)n|Simple_repeat|Simple_repeat -34107 NR_110853 101927691 Hs.552556 NR_110853 LOC101927691 - uncharacterized LOC101927691 ncRNA 16-PTNLD14-TUMOR_peak_22450 chr9 127027696 127027767 + 27.50844 NA intron (NM_001166168, intron 1 of 9) AluSg|SINE|Alu 7201 NM_001166168 10783 Hs.197071 NM_014397 HPRD:05348 NEK6 SID6-1512 NIMA-related kinase 6 protein-coding 16-PTNLD14-TUMOR_peak_1054 chr1 103047890 103047970 + 26.35707 NA Intergenic AluY|SINE|Alu 526122 NM_080630 1301 Hs.523446 NM_001854 HPRD:00375 COL11A1 CO11A1|COLL6|STL2 collagen, type XI, alpha 1 protein-coding 16-PTNLD14-TUMOR_peak_1058 chr1 103096117 103096321 + 25.85139 NA Intergenic AluYa5|SINE|Alu 477833 NM_080630 1301 Hs.523446 NM_001854 HPRD:00375 COL11A1 CO11A1|COLL6|STL2 collagen, type XI, alpha 1 protein-coding 16-PTNLD14-TUMOR_peak_17882 chr5 167888817 167889012 + 22.24687 NA intron (NM_015238, intron 20 of 22) AluSp|SINE|Alu -24549 NM_002887 5917 Hs.654907 NM_002887 HPRD:00142 RARS ArgRS|DALRD1 arginyl-tRNA synthetase protein-coding 16-PTNLD14-TUMOR_peak_2074 chr1 209938502 209938562 + 21.60162 NA intron (NR_109871, intron 8 of 12) (GA)n|Simple_repeat|Simple_repeat -3301 NM_001287754 80342 Hs.147434 NM_025228 HPRD:16305 TRAF3IP3 T3JAM TRAF3 interacting protein 3 protein-coding 16-PTNLD14-TUMOR_peak_17881 chr5 167880630 167880694 + 21.56897 NA intron (NM_015238, intron 17 of 22) AluSq|SINE|Alu -32801 NM_002887 5917 Hs.654907 NM_002887 HPRD:00142 RARS ArgRS|DALRD1 arginyl-tRNA synthetase protein-coding 16-PTNLD14-TUMOR_peak_13736 chr21 47387876 47387946 + 20.82488 NA Intergenic AluYa5|SINE|Alu -4973 NR_109931 101928796 Hs.130919 NR_109931 LOC101928796 - uncharacterized LOC101928796 ncRNA 16-PTNLD14-TUMOR_peak_19582 chr7 57554447 57554507 + 20.56453 NA Intergenic HSATII|Satellite|Satellite 44594 NM_001159279 441234 Hs.533121 NM_001159279 ENSG00000182111 ZNF716 - zinc finger protein 716 protein-coding 16-PTNLD14-TUMOR_peak_12740 chr2 238252143 238252220 + 20.02193 NA intron (NM_057167, intron 35 of 42) AluSg|SINE|Alu 70669 NM_057167 1293 Hs.233240 NM_004369 HPRD:00371 COL6A3 - collagen, type VI, alpha 3 protein-coding 16-PTNLD14-TUMOR_peak_18911 chr6 103653676 103653776 + 19.79165 NA Intergenic (TTC)n|Simple_repeat|Simple_repeat 1654068 NR_104424 57531 Hs.434340 NM_020771 HPRD:17086 HACE1 - HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 16-PTNLD14-TUMOR_peak_474 chr1 36512741 36512803 + 19.78082 NA intron (NM_177422, intron 15 of 16) AluSp|SINE|Alu -36904 NM_014466 27285 Hs.127111 NM_014466 HPRD:16410 TEKT2 TEKTB1|TEKTIN-T|h-tektin-t tektin 2 (testicular) protein-coding 16-PTNLD14-TUMOR_peak_7255 chr15 99438140 99438201 + 19.41278 NA intron (NM_001291858, intron 3 of 20) AluSx1|SINE|Alu 110515 NR_039864 100616432 NR_039864 MIR4714 - microRNA 4714 ncRNA 16-PTNLD14-TUMOR_peak_4118 chr11 61158711 61158773 + 19.23379 NA Intergenic AluSq2|SINE|Alu -1090 NM_001173991 51259 Hs.26745 NM_016499 HPRD:14439 TMEM216 - transmembrane protein 216 protein-coding 16-PTNLD14-TUMOR_peak_2278 chr1 235870818 235870889 + 18.78417 NA intron (NM_001301365, intron 44 of 52) AluSg4|SINE|Alu -56799 NM_001098721 2786 Hs.159711 NM_004485 HPRD:11978 GNG4 - guanine nucleotide binding protein (G protein), gamma 4 protein-coding 16-PTNLD14-TUMOR_peak_3121 chr10 75587018 75587074 + 18.45982 NA intron (NM_172171, intron 13 of 20) AluY|SINE|Alu -15457 NM_003635 8509 Hs.654758 NM_003635 HPRD:04465 NDST2 HSST2|NST2 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2 protein-coding 16-PTNLD14-TUMOR_peak_19684 chr7 61988602 61988662 + 18.36099 NA Intergenic ALR/Alpha|Satellite|centr 775802 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 16-PTNLD14-TUMOR_peak_6741 chr14 101868547 101868606 + 18.34747 NA Intergenic AluY|SINE|Alu 153437 NR_002770 64150 Hs.525597 NR_002770 DIO3OS C14orf134|DIO3-AS1|DIO3-OS|NCRNA00041 DIO3 opposite strand/antisense RNA (head to head) ncRNA 16-PTNLD14-TUMOR_peak_23132 chrX 33071653 33071714 + 18.34747 NA intron (NM_000109, intron 1 of 78) AluSx4|SINE|Alu 74861 NM_004010 1756 Hs.495912 NM_000109 HPRD:02303 DMD BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272|MRX85 dystrophin protein-coding 16-PTNLD14-TUMOR_peak_23142 chrX 33197718 33197784 + 18.34747 NA intron (NM_000109, intron 1 of 78) AluY|SINE|Alu 31922 NM_004006 1756 Hs.495912 NM_000109 HPRD:02303 DMD BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272|MRX85 dystrophin protein-coding 16-PTNLD14-TUMOR_peak_17026 chr5 46230942 46231003 + 18.34747 NA Intergenic ALR/Alpha|Satellite|centr -534752 NM_021072 348980 Hs.353176 NM_021072 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide-gated potassium channel 1 protein-coding 16-PTNLD14-TUMOR_peak_1264 chr1 142542690 142542762 + 18.31995 NA Intergenic (GAGTG)n|Simple_repeat|Simple_repeat 170879 NR_046228 100874392 Hs.648245 NR_046228 ANKRD20A12P - ankyrin repeat domain 20 family, member A12, pseudogene pseudo 16-PTNLD14-TUMOR_peak_22515 chr9 131100776 131100847 + 18.28406 NA Intergenic AluY|SINE|Alu -2028 NM_005094 10999 Hs.656699 NM_005094 HPRD:09172 SLC27A4 ACSVL4|FATP4|IPS solute carrier family 27 (fatty acid transporter), member 4 protein-coding 16-PTNLD14-TUMOR_peak_4821 chr12 494091 494156 + 17.89621 NA intron (NM_001042603, intron 2 of 27) AluSx|SINE|Alu -4393 NM_001130147 84318 Hs.631656 NM_032358 HPRD:17485 CCDC77 - coiled-coil domain containing 77 protein-coding 16-PTNLD14-TUMOR_peak_1066 chr1 103130542 103130649 + 17.75976 NA Intergenic AluY|SINE|Alu 443457 NM_080630 1301 Hs.523446 NM_001854 HPRD:00375 COL11A1 CO11A1|COLL6|STL2 collagen, type XI, alpha 1 protein-coding 16-PTNLD14-TUMOR_peak_15999 chr4 52663008 52663076 + 17.74365 NA Intergenic ALR/Alpha|Satellite|centr -46124 NM_015115 23142 Hs.605388 NM_015115 HPRD:13791 DCUN1D4 - DCN1, defective in cullin neddylation 1, domain containing 4 protein-coding 16-PTNLD14-TUMOR_peak_12509 chr2 204776368 204776439 + 17.67614 NA Intergenic AluY|SINE|Alu -25068 NM_012092 29851 Hs.56247 NM_012092 HPRD:09196 ICOS AILIM|CD278|CVID1 inducible T-cell co-stimulator protein-coding 16-PTNLD14-TUMOR_peak_1051 chr1 103007761 103007993 + 17.58931 NA Intergenic AluYa5|SINE|Alu -545087 NR_110211 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 16-PTNLD14-TUMOR_peak_20651 chr8 6203485 6203564 + 17.51355 NA Intergenic AluYb8|SINE|Alu 60545 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 16-PTNLD14-TUMOR_peak_15536 chr3 196069603 196069686 + 17.50550 NA Intergenic AluY|SINE|Alu -4353 NM_001204898 116211 Hs.733264 NM_138461 HPRD:14013 TM4SF19 - transmembrane 4 L six family member 19 protein-coding 16-PTNLD14-TUMOR_peak_3953 chr11 47958119 47958178 + 16.79795 NA Intergenic AluSx1|SINE|Alu -43962 NM_001098503 5795 Hs.318547 NM_002843 HPRD:02955 PTPRJ CD148|DEP1|HPTPeta|R-PTP-ETA|SCC1 protein tyrosine phosphatase, receptor type, J protein-coding 16-PTNLD14-TUMOR_peak_6943 chr15 41025310 41025367 + 16.70449 NA TTS (NM_001164270) TTS (NM_001164270) 22120 NM_018145 55177 Hs.511067 NM_018145 HPRD:07687 RMDN3 FAM82A2|FAM82C|RMD-3|RMD3|ptpip51 regulator of microtubule dynamics 3 protein-coding 16-PTNLD14-TUMOR_peak_16395 chr4 126749280 126749348 + 16.70449 NA Intergenic (GGAA)n|Simple_repeat|Simple_repeat 320900 NR_031746 100302267 NR_031746 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 16-PTNLD14-TUMOR_peak_21284 chr8 111740595 111740653 + 16.63223 NA Intergenic (CTATT)n|Simple_repeat|Simple_repeat 299038 NR_125417 101927459 Hs.575543 NR_125416 LOC101927459 - uncharacterized LOC101927459 ncRNA 16-PTNLD14-TUMOR_peak_16000 chr4 52665219 52665286 + 16.54732 NA Intergenic ALR/Alpha|Satellite|centr -43914 NM_015115 23142 Hs.605388 NM_015115 HPRD:13791 DCUN1D4 - DCN1, defective in cullin neddylation 1, domain containing 4 protein-coding 16-PTNLD14-TUMOR_peak_13407 chr20 62579939 62580045 + 16.11017 NA intron (NM_017859, intron 1 of 14) G-rich|Low_complexity|Low_complexity 2535 NM_001193379 54963 Hs.504998 NM_017859 HPRD:15607 UCKL1 UCK1-LIKE|UCK1L|URKL1 uridine-cytidine kinase 1-like 1 protein-coding 16-PTNLD14-TUMOR_peak_17152 chr5 60956400 60956461 + 16.06833 NA intron (NM_173667, intron 2 of 3) (GA)n|Simple_repeat|Simple_repeat 22794 NM_173667 285668 Hs.683866 NM_173667 HPRD:09962 C5orf64 - chromosome 5 open reading frame 64 protein-coding 16-PTNLD14-TUMOR_peak_22475 chr9 127198022 127198090 + 15.68605 NA Intergenic AluY|SINE|Alu -20304 NM_002799 5695 Hs.213470 NM_002799 HPRD:04940 PSMB7 Z proteasome (prosome, macropain) subunit, beta type, 7 protein-coding 16-PTNLD14-TUMOR_peak_1815 chr1 178740204 178740260 + 15.54977 NA intron (NM_001286247, intron 1 of 18) AluSq|SINE|Alu 45950 NM_152663 55103 Hs.632485 NM_018037 HPRD:15206 RALGPS2 dJ595C2.1 Ral GEF with PH domain and SH3 binding motif 2 protein-coding 16-PTNLD14-TUMOR_peak_15912 chr4 49146375 49146438 + 15.37032 NA Intergenic (CATTC)n|Satellite|Satellite 157747 NM_001286791 80157 Hs.479703 NM_025087 HPRD:08638 CWH43 CWH43-C cell wall biogenesis 43 C-terminal homolog (S. cerevisiae) protein-coding 16-PTNLD14-TUMOR_peak_16610 chr4 171331972 171332039 + 15.33189 NA Intergenic L1PA4|LINE|L1 -320467 NM_001286683 51166 Hs.529735 NM_016228 HPRD:12392 AADAT KAT2|KATII aminoadipate aminotransferase protein-coding 16-PTNLD14-TUMOR_peak_12491 chr2 204693627 204693688 + 15.33189 NA Intergenic AluSz|SINE|Alu -38854 NM_001037631 1493 Hs.247824 NM_005214 HPRD:00474 CTLA4 CD|CD152|CELIAC3|CTLA-4|GRD4|GSE|IDDM12 cytotoxic T-lymphocyte-associated protein 4 protein-coding 16-PTNLD14-TUMOR_peak_6228 chr14 19044587 19044638 + 15.31891 NA Intergenic ALR/Alpha|Satellite|centr -332982 NM_001013354 440153 Hs.534880 NM_001013354 HPRD:18633 OR11H12 - olfactory receptor, family 11, subfamily H, member 12 protein-coding 16-PTNLD14-TUMOR_peak_4833 chr12 548421 548514 + 15.18045 NA intron (NM_032358, intron 10 of 12) AluSx1|SINE|Alu -21076 NM_173593 283358 Hs.504416 NM_173593 HPRD:12514 B4GALNT3 - beta-1,4-N-acetyl-galactosaminyl transferase 3 protein-coding 16-PTNLD14-TUMOR_peak_15588 chr4 401084 401318 + 15.13619 NA Intergenic AluYb8|SINE|Alu 66797 NR_002451 79963 Hs.745030 NM_024903 ABCA11P ABCA11|EST1133530 ATP-binding cassette, sub-family A (ABC1), member 11, pseudogene pseudo 16-PTNLD14-TUMOR_peak_20632 chr8 5020471 5020526 + 15.09327 NA Intergenic AluSc|SINE|Alu -168170 NM_033225 64478 Hs.571466 NM_033225 HPRD:10523 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 16-PTNLD14-TUMOR_peak_12721 chr2 236101752 236101807 + 15.09327 NA Intergenic L1PA5|LINE|L1 241151 NM_014521 23677 Hs.516777 NM_014521 HPRD:09285 SH3BP4 BOG25|TTP SH3-domain binding protein 4 protein-coding 16-PTNLD14-TUMOR_peak_6254 chr14 21106076 21106135 + 15.09327 NA Intergenic AluSp|SINE|Alu 3745 NM_001001968 341799 Hs.513132 NM_001001968 HPRD:17779 OR6S1 OR14-37|OR6S1Q olfactory receptor, family 6, subfamily S, member 1 protein-coding 16-PTNLD14-TUMOR_peak_7092 chr15 72200742 72200796 + 15.09327 NA intron (NM_006901, intron 19 of 41) AluY|SINE|Alu 97881 NM_016346 10002 Hs.187354 NM_014249 NR2E3 ESCS|PNR|RNR|RP37|rd7 nuclear receptor subfamily 2, group E, member 3 protein-coding 16-PTNLD14-TUMOR_peak_19031 chr6 144952352 144952403 + 15.09327 NA intron (NM_007124, intron 50 of 73) (TG)n|Simple_repeat|Simple_repeat 339504 NM_007124 7402 Hs.133135 NM_007124 HPRD:00547 UTRN DMDL|DRP|DRP1 utrophin protein-coding 16-PTNLD14-TUMOR_peak_817 chr1 62871523 62871576 + 15.09327 NA Intergenic AluSg7|SINE|Alu -30426 NM_001017415 7398 Hs.35086 NM_003368 HPRD:04593 USP1 UBP ubiquitin specific peptidase 1 protein-coding 16-PTNLD14-TUMOR_peak_20618 chr8 2179148 2179219 + 15.09327 NA Intergenic AluYb8|SINE|Alu 154514 NR_106983 102465695 NR_106983 MIR7160 hsa-mir-7160 microRNA 7160 ncRNA 16-PTNLD14-TUMOR_peak_12115 chr2 135875049 135875346 + 14.97653 NA intron (NM_001172435, intron 7 of 24) (TTC)n|Simple_repeat|Simple_repeat 65362 NM_001172435 22930 Hs.306327 NM_012233 HPRD:16002 RAB3GAP1 P130|RAB3GAP|RAB3GAP130|WARBM1 RAB3 GTPase activating protein subunit 1 (catalytic) protein-coding 16-PTNLD14-TUMOR_peak_12326 chr2 177632190 177632258 + 14.94628 NA Intergenic AluYa5|SINE|Alu 129742 NR_110599 102724224 Hs.663125 NR_110599 LOC102724224 - uncharacterized LOC102724224 ncRNA 16-PTNLD14-TUMOR_peak_17890 chr5 167928631 167928685 + 14.75269 NA intron (NM_002887, intron 8 of 14) AluSx|SINE|Alu 15195 NM_002887 5917 Hs.654907 NM_002887 HPRD:00142 RARS ArgRS|DALRD1 arginyl-tRNA synthetase protein-coding 16-PTNLD14-TUMOR_peak_3675 chr11 11054247 11054397 + 14.72693 NA Intergenic AluY|SINE|Alu 174558 NR_034137 729013 Hs.726427 NR_034137 ENSG00000247271 ZBED5-AS1 - ZBED5 antisense RNA 1 ncRNA 16-PTNLD14-TUMOR_peak_7638 chr16 25376349 25376403 + 14.72693 NA Intergenic AluY|SINE|Alu -107521 NM_001012981 342357 Hs.513451 NM_001012981 HPRD:11268 ZKSCAN2 ZNF694|ZSCAN31|ZSCAN34 zinc finger with KRAB and SCAN domains 2 protein-coding 16-PTNLD14-TUMOR_peak_17121 chr5 56431836 56431891 + 14.43046 NA Intergenic AluY|SINE|Alu -37912 NM_022913 65056 Hs.444279 NM_022913 HPRD:16333 GPBP1 GPBP|SSH6|VASCULIN GC-rich promoter binding protein 1 protein-coding 16-PTNLD14-TUMOR_peak_23930 chrY 13643336 13643389 + 14.38113 NA Intergenic HSATII|Satellite|Satellite 890027 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 16-PTNLD14-TUMOR_peak_24123 chrY 58977141 58977206 + 14.22267 NA Intergenic (CATTC)n|Simple_repeat|Simple_repeat -123284 NM_005840 10251 Hs.381912 NM_005840 HPRD:03917 SPRY3 HSPRY3|spry-3 sprouty homolog 3 (Drosophila) protein-coding 16-PTNLD14-TUMOR_peak_16001 chr4 52669652 52669706 + 14.18820 NA Intergenic ALR/Alpha|Satellite|centr -39487 NM_015115 23142 Hs.605388 NM_015115 HPRD:13791 DCUN1D4 - DCN1, defective in cullin neddylation 1, domain containing 4 protein-coding 16-PTNLD14-TUMOR_peak_8394 chr17 6294632 6294689 + 14.18571 NA Intergenic AluSx1|SINE|Alu 43792 NM_001285402 23746 Hs.279887 NM_014336 HPRD:05092 AIPL1 AIPL2|LCA4 aryl hydrocarbon receptor interacting protein-like 1 protein-coding 16-PTNLD14-TUMOR_peak_10260 chr19 22599337 22599398 + 14.13496 NA intron (NM_001098626, intron 1 of 3) AluSq2|SINE|Alu 5781 NM_001098626 148198 Hs.667355 NM_001098626 ENSG00000197360 ZNF98 F7175|ZNF739 zinc finger protein 98 protein-coding 16-PTNLD14-TUMOR_peak_2314 chr1 238108890 238108947 + 14.09057 NA Intergenic Intergenic -54696 NM_021186 57829 Hs.136241 NM_021186 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 16-PTNLD14-TUMOR_peak_628 chr1 43730562 43730664 + 13.94148 NA Intergenic AluY|SINE|Alu -5052 NM_144626 128218 Hs.104476 NM_144626 HPRD:14457 TMEM125 - transmembrane protein 125 protein-coding 16-PTNLD14-TUMOR_peak_1354 chr1 146819087 146819153 + 13.94148 NA Intergenic L1PA5|LINE|L1 104829 NM_001256337 9557 Hs.191164 NM_004284 HPRD:09880 CHD1L ALC1|CHDL chromodomain helicase DNA binding protein 1-like protein-coding 16-PTNLD14-TUMOR_peak_14640 chr3 66857120 66857184 + 13.89162 NA Intergenic AluSz|SINE|Alu -191575 NM_032505 84541 Hs.116665 NM_032505 HPRD:18138 KBTBD8 TA-KRP kelch repeat and BTB (POZ) domain containing 8 protein-coding 16-PTNLD14-TUMOR_peak_20914 chr8 43808651 43808701 + 13.89068 NA Intergenic ALR/Alpha|Satellite|centr 661091 NM_001005365 340441 Hs.531579 NM_001002920 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family, member A protein-coding 16-PTNLD14-TUMOR_peak_10573 chr19 41554516 41554573 + 13.82590 NA Intergenic AluSx1|SINE|Alu -39812 NM_000766 1553 Hs.567252 NM_000766 HPRD:07454 CYP2A13 CPAD|CYP2A|CYPIIA13 cytochrome P450, family 2, subfamily A, polypeptide 13 protein-coding 16-PTNLD14-TUMOR_peak_485 chr1 36545274 36545346 + 13.81645 NA Intergenic AluY|SINE|Alu -4366 NM_014466 27285 Hs.127111 NM_014466 HPRD:16410 TEKT2 TEKTB1|TEKTIN-T|h-tektin-t tektin 2 (testicular) protein-coding 16-PTNLD14-TUMOR_peak_16003 chr4 52671852 52671917 + 13.74077 NA Intergenic ALR/Alpha|Satellite|centr -37282 NM_015115 23142 Hs.605388 NM_015115 HPRD:13791 DCUN1D4 - DCN1, defective in cullin neddylation 1, domain containing 4 protein-coding 16-PTNLD14-TUMOR_peak_976 chr1 93623405 93623649 + 13.66815 NA intron (NM_016040, intron 2 of 3) AluY|SINE|Alu 22719 NM_001167830 50999 Hs.482873 NM_016040 HPRD:13028 TMED5 CGI-100|p28 transmembrane emp24 protein transport domain containing 5 protein-coding 16-PTNLD14-TUMOR_peak_14179 chr3 3107205 3107279 + 13.66815 NA TTS (NM_000564) TTS (NM_000564) -4413 NR_046554 100873975 Hs.581502 NR_046554 CNTN4-AS1 - CNTN4 antisense RNA 1 ncRNA 16-PTNLD14-TUMOR_peak_6606 chr14 71378816 71378875 + 13.65776 NA intron (NM_014982, intron 1 of 35) AluY|SINE|Alu 4723 NM_014982 22990 Hs.446559 NM_014982 HPRD:10139 PCNX PCNXL1|pecanex pecanex homolog (Drosophila) protein-coding 16-PTNLD14-TUMOR_peak_19066 chr6 148731276 148731464 + 13.63839 NA intron (NM_015278, intron 2 of 19) AluSg|SINE|Alu 67641 NM_015278 23328 Hs.193133 NM_015278 HPRD:06408 SASH1 SH3D6A|dJ323M4|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 16-PTNLD14-TUMOR_peak_3140 chr10 79587001 79587055 + 13.52170 NA intron (NM_004747, intron 13 of 31) AluSx1|SINE|Alu 99320 NM_004747 9231 Hs.652690 NM_004747 HPRD:04972 DLG5 LP-DLG|P-DLG5|PDLG discs, large homolog 5 (Drosophila) protein-coding 16-PTNLD14-TUMOR_peak_21686 chr9 11365906 11365978 + 13.52018 NA Intergenic L1PA3|LINE|L1 752736 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 16-PTNLD14-TUMOR_peak_22341 chr9 112379027 112379079 + 13.52018 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -24015 NM_001037293 114299 Hs.591908 NM_053016 HPRD:17817 PALM2 AKAP2 paralemmin 2 protein-coding 16-PTNLD14-TUMOR_peak_14391 chr3 32554898 32554961 + 13.52018 NA Intergenic AluJb|SINE|Alu -10526 NM_017801 54918 Hs.380627 NM_017801 HPRD:06987 CMTM6 CKLFSF6|PRO2219 CKLF-like MARVEL transmembrane domain containing 6 protein-coding 16-PTNLD14-TUMOR_peak_3161 chr10 83339664 83339730 + 13.52018 NA Intergenic AluYa5|SINE|Alu -295373 NM_001165972 10718 Hs.125119 NM_001010848 HPRD:16115 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 16-PTNLD14-TUMOR_peak_23629 chrX 124177108 124177180 + 13.52018 NA Intergenic L1PA2|LINE|L1 -79478 NM_001163278 10178 Hs.23796 NM_014253 HPRD:06669 TENM1 ODZ1|ODZ3|TEN-M1|TNM|TNM1 teneurin transmembrane protein 1 protein-coding 16-PTNLD14-TUMOR_peak_11732 chr2 92267783 92267836 + 13.52018 NA Intergenic HSATII|Satellite|Satellite 138650 NR_027714 440888 Hs.730239 NM_001032412 ENSG00000226481 ACTR3BP2 FKSG73 ACTR3B pseudogene 2 pseudo 16-PTNLD14-TUMOR_peak_11420 chr2 50626929 50626986 + 13.52018 NA intron (NM_001135659, intron 18 of 23) (A)n|Simple_repeat|Simple_repeat -52063 NM_138735 9378 Hs.637685 NM_004801 HPRD:11858 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 16-PTNLD14-TUMOR_peak_13627 chr21 38683776 38683833 + 13.52018 NA Intergenic AluSc8|SINE|Alu -43971 NM_006052 10311 Hs.369488 NM_006052 HPRD:10390 DSCR3 DCRA|DSCRA Down syndrome critical region gene 3 protein-coding 16-PTNLD14-TUMOR_peak_4564 chr11 101908728 101908794 + 13.52018 NA Intergenic AluYa5|SINE|Alu -9408 NM_001195005 85016 Hs.98328 NM_032930 HPRD:14433 C11orf70 - chromosome 11 open reading frame 70 protein-coding 16-PTNLD14-TUMOR_peak_23241 chrX 58432531 58432587 + 13.52018 NA Intergenic ALR/Alpha|Satellite|centr -495492 NM_007156 7789 Hs.550094 NM_007156 HPRD:02210 ZXDA ZNF896 zinc finger, X-linked, duplicated A protein-coding 16-PTNLD14-TUMOR_peak_3237 chr10 100035753 100035920 + 13.52018 NA Intergenic (GAA)n|Simple_repeat|Simple_repeat -7829 NM_032211 84171 Hs.306814 NM_032211 HPRD:09538 LOXL4 LOXC lysyl oxidase-like 4 protein-coding 16-PTNLD14-TUMOR_peak_14205 chr3 6817489 6817542 + 13.52018 NA intron (NR_110125, intron 2 of 3) AluY|SINE|Alu 29621 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 16-PTNLD14-TUMOR_peak_14006 chr22 29802091 29802147 + 13.52018 NA Intergenic AluYb8|SINE|Alu -17547 NM_145730 162 Hs.368794 NM_001127 HPRD:02541 AP1B1 ADTB1|AP105A|BAM22|CLAPB2 adaptor-related protein complex 1, beta 1 subunit protein-coding 16-PTNLD14-TUMOR_peak_21717 chr9 17122625 17122679 + 13.52018 NA Intergenic AluY|SINE|Alu -12337 NM_001286985 54875 Hs.435381 NM_017738 HPRD:10800 CNTLN C9orf101|C9orf39|bA340N12.1 centlein, centrosomal protein protein-coding 16-PTNLD14-TUMOR_peak_16006 chr4 52677804 52677867 + 13.50599 NA Intergenic ALR/Alpha|Satellite|centr -31331 NM_015115 23142 Hs.605388 NM_015115 HPRD:13791 DCUN1D4 - DCN1, defective in cullin neddylation 1, domain containing 4 protein-coding 16-PTNLD14-TUMOR_peak_8313 chr16 90114316 90114397 + 13.48930 NA promoter-TSS (NR_027336) promoter-TSS (NR_027336) -165 NR_027336 100130015 Hs.431792 NR_027335 ENSG00000222019 URAHP URAH urate (hydroxyiso-) hydrolase, pseudogene pseudo 16-PTNLD14-TUMOR_peak_12894 chr20 17565070 17565131 + 13.44532 NA intron (NM_006870, intron 1 of 3) AluSp|SINE|Alu 14501 NM_001011546 11034 Hs.304192 NM_006870 HPRD:16446 DSTN ACTDP|ADF|HEL32|bA462D18.2 destrin (actin depolymerizing factor) protein-coding 16-PTNLD14-TUMOR_peak_4812 chr12 459077 459142 + 13.40177 NA intron (NM_001042603, intron 10 of 27) AluSp|SINE|Alu -39407 NM_001130147 84318 Hs.631656 NM_032358 HPRD:17485 CCDC77 - coiled-coil domain containing 77 protein-coding 16-PTNLD14-TUMOR_peak_20006 chr7 98686423 98686482 + 13.39119 NA intron (NM_001199847, intron 1 of 17) AluSx|SINE|Alu 55291 NM_020429 57154 Hs.189329 NM_020429 HPRD:06902 SMURF1 - SMAD specific E3 ubiquitin protein ligase 1 protein-coding 16-PTNLD14-TUMOR_peak_9281 chr17_gl000204_random 25759 25820 + 13.35268 NA NA AluSz|SINE|Alu NA NA 16-PTNLD14-TUMOR_peak_4400 chr11 73793929 73793993 + 13.32109 NA intron (NM_001286577, intron 22 of 32) L1PA6|LINE|L1 -73679 NM_022803 7352 Hs.101337 NM_003356 HPRD:03623 UCP3 SLC25A9 uncoupling protein 3 (mitochondrial, proton carrier) protein-coding 16-PTNLD14-TUMOR_peak_14631 chr3 66790390 66790457 + 13.26780 NA Intergenic AluY|SINE|Alu -239578 NM_015541 26018 Hs.518055 NM_015541 HPRD:10057 LRIG1 LIG-1|LIG1 leucine-rich repeats and immunoglobulin-like domains 1 protein-coding 16-PTNLD14-TUMOR_peak_15647 chr4 2726863 2726919 + 13.18426 NA intron (NM_001256668, intron 19 of 19) AluSq2|SINE|Alu 30861 NM_001161527 79155 Hs.368551 NM_024309 HPRD:18207 TNIP2 ABIN2|FLIP1|KLIP TNFAIP3 interacting protein 2 protein-coding 16-PTNLD14-TUMOR_peak_22697 chr9_gl000199_random 85748 85812 + 13.15760 NA NA ALR/Alpha|Satellite|centr NA NA 16-PTNLD14-TUMOR_peak_20964 chr8 46872359 46872408 + 13.09473 NA Intergenic ALR/Alpha|Satellite|centr -880125 NR_027012 497634 Hs.406982 NR_027012 ENSG00000253314 LINC00293 BEYLA|NCRNA00293 long intergenic non-protein coding RNA 293 ncRNA 16-PTNLD14-TUMOR_peak_13738 chr21 47440974 47441229 + 13.05019 NA Intergenic AluY|SINE|Alu 39438 NM_001848 1291 Hs.474053 NM_001848 HPRD:00370 COL6A1 OPLL collagen, type VI, alpha 1 protein-coding 16-PTNLD14-TUMOR_peak_11817 chr2 96872292 96872423 + 12.97624 NA intron (NM_020151, intron 1 of 7) AluY|SINE|Alu -1797 NR_046322 285033 Hs.58648 NM_001037228 STARD7-AS1 - STARD7 antisense RNA 1 ncRNA 16-PTNLD14-TUMOR_peak_19427 chr7 27783384 27783444 + 12.94281 NA intron (NM_006024, intron 1 of 16) AluYb8|SINE|Alu 3700 NM_006024 8887 Hs.34576 NM_006024 HPRD:05618 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 (human T-cell leukemia virus type I) binding protein 1 protein-coding 16-PTNLD14-TUMOR_peak_5698 chr12 111867331 111867390 + 12.91881 NA intron (NM_005475, intron 2 of 7) AluSx1|SINE|Alu -5306 NM_001291424 10019 Hs.506784 NM_005475 HPRD:05480 SH2B3 IDDM20|LNK SH2B adaptor protein 3 protein-coding 16-PTNLD14-TUMOR_peak_17675 chr5 140487415 140487485 + 12.89416 NA Intergenic AluY|SINE|Alu 7620 NM_018937 56132 Hs.508987 NM_018937 HPRD:08398 PCDHB3 PCDH-BETA3 protocadherin beta 3 protein-coding 16-PTNLD14-TUMOR_peak_7834 chr16 33950151 33950220 + 12.79713 NA Intergenic Intergenic 12318 NR_038368 649159 Hs.532675 NM_001040069 ENSG00000256642 LINC00273 NCRNA00273|TOP long intergenic non-protein coding RNA 273 ncRNA 16-PTNLD14-TUMOR_peak_19062 chr6 148717339 148717403 + 12.78912 NA intron (NM_015278, intron 2 of 19) AluSz|SINE|Alu 53642 NM_015278 23328 Hs.193133 NM_015278 HPRD:06408 SASH1 SH3D6A|dJ323M4|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 16-PTNLD14-TUMOR_peak_5010 chr12 19684938 19684995 + 12.78912 NA Intergenic AluSx1|SINE|Alu 91451 NM_001267043 121536 Hs.126497 NM_153207 AEBP2 - AE binding protein 2 protein-coding 16-PTNLD14-TUMOR_peak_15921 chr4 49155230 49155283 + 12.78796 NA Intergenic (CATTC)n|Satellite|Satellite 166597 NM_001286791 80157 Hs.479703 NM_025087 HPRD:08638 CWH43 CWH43-C cell wall biogenesis 43 C-terminal homolog (S. cerevisiae) protein-coding 16-PTNLD14-TUMOR_peak_6392 chr14 39142511 39142585 + 12.78688 NA Intergenic L1PA6|LINE|L1 243538 NR_039982 283547 Hs.675941 NR_039982 ENSG00000259070 LINC00639 - long intergenic non-protein coding RNA 639 ncRNA 16-PTNLD14-TUMOR_peak_24082 chrY 28798965 28799024 + 12.74182 NA Intergenic (GAGTG)n|Simple_repeat|Simple_repeat 924357 NR_002176 474148 Hs.511777 NR_002176 TTTY3B LNCRNA00122|NCRNA00122 testis-specific transcript, Y-linked 3B (non-protein coding) ncRNA 16-PTNLD14-TUMOR_peak_4846 chr12 600955 601022 + 12.73576 NA intron (NM_173593, intron 1 of 19) AluSx3|SINE|Alu 31445 NM_173593 283358 Hs.504416 NM_173593 HPRD:12514 B4GALNT3 - beta-1,4-N-acetyl-galactosaminyl transferase 3 protein-coding 16-PTNLD14-TUMOR_peak_12822 chr20 1857700 1857874 + 12.71055 NA Intergenic Intergenic -17026 NM_001040022 140885 Hs.581021 NM_080792 HPRD:03912 SIRPA BIT|CD172A|MFR|MYD-1|P84|PTPNS1|SHPS1|SIRP signal-regulatory protein alpha protein-coding 16-PTNLD14-TUMOR_peak_13871 chr22 20465323 20465376 + 12.69286 NA Intergenic AluSx1|SINE|Alu -3563 NM_015672 85376 Hs.115429 NM_015672 ENSG00000196622 RIMBP3 RIM-BP3|RIM-BP3.1|RIM-BP3.A|RIMBP3.1|RIMBP3A RIMS binding protein 3 protein-coding 16-PTNLD14-TUMOR_peak_8054 chr16 67353014 67353076 + 12.66479 NA intron (NM_001100915, intron 2 of 15) AluSq2|SINE|Alu 7616 NM_001100915 146212 Hs.299127 NM_001100915 ENSG00000168676 KCTD19 - potassium channel tetramerization domain containing 19 protein-coding 16-PTNLD14-TUMOR_peak_22451 chr9 127041608 127041668 + 12.66479 NA intron (NM_001166168, intron 1 of 9) AluSz|SINE|Alu -12612 NM_001166171 10783 Hs.197071 NM_014397 HPRD:05348 NEK6 SID6-1512 NIMA-related kinase 6 protein-coding 16-PTNLD14-TUMOR_peak_22897 chrUn_gl000225 49978 50035 + 12.65710 NA NA BSR/Beta|Satellite|Satellite NA NA 16-PTNLD14-TUMOR_peak_16327 chr4 120051204 120051261 + 12.63561 NA Intergenic AluY|SINE|Alu -5707 NM_016599 51778 Hs.732122 NM_016599 HPRD:05724 MYOZ2 C4orf5|CMH16|CS-1 myozenin 2 protein-coding 16-PTNLD14-TUMOR_peak_20917 chr8 43813588 43813650 + 12.57728 NA Intergenic ALR/Alpha|Satellite|centr 666034 NM_001005365 340441 Hs.531579 NM_001002920 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family, member A protein-coding 16-PTNLD14-TUMOR_peak_22157 chr9 87105091 87105145 + 12.56057 NA Intergenic AluSx3|SINE|Alu -121705 NM_022127 64078 Hs.535966 NM_022127 HPRD:12200 SLC28A3 CNT3 solute carrier family 28 (concentrative nucleoside transporter), member 3 protein-coding 16-PTNLD14-TUMOR_peak_1047 chr1 102977766 102977955 + 12.54825 NA Intergenic L1M2|LINE|L1 -515070 NR_110211 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 16-PTNLD14-TUMOR_peak_22457 chr9 127087178 127087246 + 12.48767 NA intron (NM_001166171, intron 6 of 10) AluSx|SINE|Alu -28540 NR_027406 100129034 Hs.654980 NR_027406 LOC100129034 - uncharacterized LOC100129034 ncRNA 16-PTNLD14-TUMOR_peak_14639 chr3 66853081 66853276 + 12.48200 NA Intergenic AluY|SINE|Alu -195549 NM_032505 84541 Hs.116665 NM_032505 HPRD:18138 KBTBD8 TA-KRP kelch repeat and BTB (POZ) domain containing 8 protein-coding 16-PTNLD14-TUMOR_peak_23390 chrX 71375109 71375165 + 12.47734 NA intron (NM_207422, intron 1 of 1) AluSx1|SINE|Alu 11103 NM_207422 392490 Hs.660859 NM_207422 FLJ44635 - TPT1-like protein protein-coding 16-PTNLD14-TUMOR_peak_1049 chr1 102999712 102999790 + 12.42671 NA Intergenic L1P1|LINE|L1 -536961 NR_110211 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 16-PTNLD14-TUMOR_peak_3970 chr11 48776638 48776694 + 12.36306 NA Intergenic ALR/Alpha|Satellite|centr 266321 NM_001005512 403253 Hs.554532 NM_001005512 HPRD:17718 OR4A47 OR11-113 olfactory receptor, family 4, subfamily A, member 47 protein-coding 16-PTNLD14-TUMOR_peak_7915 chr16 47383927 47383983 + 12.34416 NA intron (NM_030790, intron 8 of 17) L1PA4|LINE|L1 111060 NM_030790 81533 Hs.42217 NM_030790 ITFG1 TIP integrin alpha FG-GAP repeat containing 1 protein-coding 16-PTNLD14-TUMOR_peak_12511 chr2 204785567 204785628 + 12.32671 NA Intergenic AluSz6|SINE|Alu -15874 NM_012092 29851 Hs.56247 NM_012092 HPRD:09196 ICOS AILIM|CD278|CVID1 inducible T-cell co-stimulator protein-coding 16-PTNLD14-TUMOR_peak_8138 chr16 73001558 73001747 + 12.30489 NA intron (NM_006885, intron 1 of 9) AluY|SINE|Alu 80622 NM_006885 463 Hs.598297 NM_006885 HPRD:00075 ZFHX3 ATBF1|ATBT|ZNF927 zinc finger homeobox 3 protein-coding 16-PTNLD14-TUMOR_peak_17319 chr5 83198924 83199002 + 12.25700 NA Intergenic L1PA3|LINE|L1 -182067 NM_001884 1404 Hs.2799 NM_001884 HPRD:00275 HAPLN1 CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 16-PTNLD14-TUMOR_peak_5850 chr12 126905136 126905265 + 12.20674 NA Intergenic AluYb9|SINE|Alu -21827 NR_015398 100128554 Hs.408255 NR_015398 ENSG00000214043 LOC100128554 - uncharacterized LOC100128554 ncRNA 16-PTNLD14-TUMOR_peak_5110 chr12 27611599 27611790 + 12.19141 NA Intergenic AluSx1|SINE|Alu -8049 NM_001145010 341346 Hs.282121 NM_001145010 ENSG00000165935 SMCO2 C12orf70 single-pass membrane protein with coiled-coil domains 2 protein-coding 16-PTNLD14-TUMOR_peak_8056 chr16 67361284 67361338 + 12.09247 NA promoter-TSS (NM_001100915) promoter-TSS (NM_001100915) 564 NM_018296 55282 Hs.125139 NM_018296 HPRD:08558 LRRC36 RORBP70|XLHSRF2 leucine rich repeat containing 36 protein-coding 16-PTNLD14-TUMOR_peak_22453 chr9 127070667 127070733 + 12.07121 NA intron (NM_001166171, intron 3 of 10) AluSq2|SINE|Alu 16001 NM_001166169 10783 Hs.197071 NM_014397 HPRD:05348 NEK6 SID6-1512 NIMA-related kinase 6 protein-coding 16-PTNLD14-TUMOR_peak_17870 chr5 167800790 167800851 + 12.00362 NA intron (NM_015238, intron 2 of 22) AluY|SINE|Alu 81755 NM_001161662 23286 Hs.484047 NM_015238 HPRD:10033 WWC1 HBEBP3|HBEBP36|KIBRA|MEMRYQTL|PPP1R168 WW and C2 domain containing 1 protein-coding 16-PTNLD14-TUMOR_peak_2452 chr10 8205083 8205133 + 11.98992 NA Intergenic AluSc|SINE|Alu 105160 NR_108058 100507143 Hs.258979 NR_108058 ENSG00000232170 LINC00708 GS1-756B1.2 long intergenic non-protein coding RNA 708 ncRNA 16-PTNLD14-TUMOR_peak_20685 chr8 9424327 9424398 + 11.98992 NA intron (NM_003747, intron 1 of 26) AluYb8|SINE|Alu 10917 NM_003747 8658 Hs.370267 NM_003747 HPRD:04490 TNKS ARTD5|PARP-5a|PARP5A|PARPL|TIN1|TINF1|TNKS1|pART5 tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase protein-coding 16-PTNLD14-TUMOR_peak_14785 chr3 93973574 93973703 + 11.98992 NA Intergenic AluSz|SINE|Alu -191571 NM_001195643 200895 Hs.718516 NM_176815 HPRD:11246 DHFRL1 DHFRP4 dihydrofolate reductase-like 1 protein-coding 16-PTNLD14-TUMOR_peak_3151 chr10 81129553 81129606 + 11.98992 NA Intergenic AluSx|SINE|Alu 22359 NM_005729 10105 Hs.381072 NM_005729 HPRD:06839 PPIF CYP3|CyP-M|Cyp-D|CypD peptidylprolyl isomerase F protein-coding 16-PTNLD14-TUMOR_peak_5973 chr13 40655628 40655680 + 11.98992 NA Intergenic AluY|SINE|Alu -100292 NR_046870 100874127 Hs.578028 NR_046870 ENSG00000230710 LINC00332 NCRNA00332 long intergenic non-protein coding RNA 332 ncRNA 16-PTNLD14-TUMOR_peak_19456 chr7 35822544 35822642 + 11.98992 NA intron (NR_120512, intron 2 of 4) L1P1|LINE|L1 17642 NR_120512 101928545 Hs.648103 NR_120511 SEPT7-AS1 - SEPT7 antisense RNA 1 (head to head) ncRNA 16-PTNLD14-TUMOR_peak_14654 chr3 66923754 66923862 + 11.98992 NA Intergenic AluY|SINE|Alu -124919 NM_032505 84541 Hs.116665 NM_032505 HPRD:18138 KBTBD8 TA-KRP kelch repeat and BTB (POZ) domain containing 8 protein-coding 16-PTNLD14-TUMOR_peak_14026 chr22 32371304 32371356 + 11.98992 NA Intergenic AluSc|SINE|Alu -29994 NM_015372 25775 Hs.627602 NM_015372 ENSG00000128254 C22orf24 HSN44A4A chromosome 22 open reading frame 24 protein-coding 16-PTNLD14-TUMOR_peak_8688 chr17 30875393 30875454 + 11.98992 NA intron (NM_015194, intron 21 of 21) AluJo|SINE|Alu 61318 NM_003885 8851 Hs.500015 NM_003885 HPRD:04586 CDK5R1 CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a cyclin-dependent kinase 5, regulatory subunit 1 (p35) protein-coding 16-PTNLD14-TUMOR_peak_10270 chr19 23395697 23395749 + 11.98992 NA Intergenic AluSx1|SINE|Alu 37449 NR_045525 440519 Hs.675814 NR_045525 ZNF724P - zinc finger protein 724, pseudogene pseudo 16-PTNLD14-TUMOR_peak_783 chr1 56887776 56887827 + 11.98992 NA Intergenic AluYa5|SINE|Alu 157456 NM_003713 8613 Hs.405156 NM_003713 HPRD:06179 PPAP2B Dri42|LPP3|PAP2B|VCIP phosphatidic acid phosphatase type 2B protein-coding 16-PTNLD14-TUMOR_peak_6413 chr14 43626358 43626421 + 11.98992 NA Intergenic AluSp|SINE|Alu 1350110 NM_032135 84075 Hs.307086 NM_032135 HPRD:12638 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 16-PTNLD14-TUMOR_peak_23841 chrY 7451498 7451553 + 11.98992 NA Intergenic AluY|SINE|Alu 117763 NR_001552 252948 Hs.522848 NR_001552 ENSG00000225520 TTTY16 NCRNA00139 testis-specific transcript, Y-linked 16 (non-protein coding) ncRNA 16-PTNLD14-TUMOR_peak_15826 chr4 34142714 34142764 + 11.98992 NA Intergenic AluSc|SINE|Alu -2102999 NR_122079 439933 Hs.591071 NR_122079 ENSG00000247193 LOC439933 - uncharacterized LOC439933 ncRNA 16-PTNLD14-TUMOR_peak_19900 chr7 80883082 80883159 + 11.98992 NA Intergenic AluSc|SINE|Alu -334453 NM_006379 10512 Hs.269109 NM_006379 HPRD:04034 SEMA3C SEMAE|SemE sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C protein-coding 16-PTNLD14-TUMOR_peak_5145 chr12 34645083 34645134 + 11.98992 NA Intergenic ALR/Alpha|Satellite|centr 469892 NM_032834 84920 Hs.102971 NM_032834 ALG10 ALG10A|DIE2|KCR1 ALG10, alpha-1,2-glucosyltransferase protein-coding 16-PTNLD14-TUMOR_peak_3196 chr10 94481491 94481544 + 11.98992 NA Intergenic AluJb|SINE|Alu 31836 NM_002729 3087 Hs.118651 NM_002729 HHEX HEX|HMPH|HOX11L-PEN|PRH|PRHX hematopoietically expressed homeobox protein-coding 16-PTNLD14-TUMOR_peak_4517 chr11 93426362 93426415 + 11.98992 NA intron (NM_033395, intron 12 of 29) AluY|SINE|Alu -28292 NR_002569 619383 Hs.660668 NR_002569 SCARNA9 Z32|mgU2-19/30 small Cajal body-specific RNA 9 ncRNA 16-PTNLD14-TUMOR_peak_23335 chrX 64102993 64103049 + 11.98992 NA Intergenic L1PA5|LINE|L1 93392 NM_018684 55906 Hs.28249 NM_018684 HPRD:06584 ZC4H2 HCA127|KIAA1166|WRWF|WWS zinc finger, C4H2 domain containing protein-coding 16-PTNLD14-TUMOR_peak_14573 chr3 52460917 52460974 + 11.98992 NA Intergenic AluSg|SINE|Alu 14118 NM_001278221 51533 Hs.372719 NM_016483 HPRD:15127 PHF7 HSPC045|HSPC226|NYD-SP6 PHD finger protein 7 protein-coding 16-PTNLD14-TUMOR_peak_17315 chr5 83123781 83123856 + 11.98992 NA Intergenic L1PA2|LINE|L1 -106922 NM_001884 1404 Hs.2799 NM_001884 HPRD:00275 HAPLN1 CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 16-PTNLD14-TUMOR_peak_19429 chr7 29204347 29204399 + 11.98992 NA intron (NM_001293069, intron 2 of 13) AluSz6|SINE|Alu 18210 NM_001293069 1124 Hs.654611 NM_004067 HPRD:04173 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 16-PTNLD14-TUMOR_peak_19465 chr7 37887855 37887920 + 11.98992 NA promoter-TSS (NM_016616) promoter-TSS (NM_016616) -312 NM_016616 51314 Hs.723454 NM_016616 HPRD:16243 NME8 CILD6|NM23-H8|SPTRX2|TXNDC3|sptrx-2 NME/NM23 family member 8 protein-coding 16-PTNLD14-TUMOR_peak_2540 chr10 17215816 17215907 + 11.98992 NA intron (NM_004412, intron 2 of 10) AluSg|SINE|Alu 28209 NM_004412 1787 Hs.351665 NM_004412 HPRD:16001 TRDMT1 DMNT2|DNMT2|MHSAIIP|PUMET|RNMT1 tRNA aspartic acid methyltransferase 1 protein-coding 16-PTNLD14-TUMOR_peak_2640 chr10 30802039 30802091 + 11.98992 NA Intergenic AluSx1|SINE|Alu 79115 NM_005204 1326 Hs.432453 NM_005204 HPRD:01863 MAP3K8 COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT mitogen-activated protein kinase kinase kinase 8 protein-coding 16-PTNLD14-TUMOR_peak_22485 chr9 128009229 128009283 + 11.98992 NA Intergenic AluSg|SINE|Alu -5590 NM_005347 3309 Hs.743241 NM_005347 HPRD:00682 HSPA5 BIP|GRP78|HEL-S-89n|MIF2 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) protein-coding 16-PTNLD14-TUMOR_peak_12068 chr2 132159301 132159398 + 11.98992 NA Intergenic L1P1|LINE|L1 -1125 NR_036499 389043 Hs.586791 NR_036499 LINC01120 - long intergenic non-protein coding RNA 1120 ncRNA 16-PTNLD14-TUMOR_peak_7031 chr15 55938606 55938659 + 11.98992 NA intron (NM_173814, intron 11 of 19) AluY|SINE|Alu -57582 NM_015617 26108 Hs.87194 NM_015617 PYGO1 - pygopus family PHD finger 1 protein-coding 16-PTNLD14-TUMOR_peak_12539 chr2 206852379 206852433 + 11.97919 NA Intergenic AluSc8|SINE|Alu 98500 NM_017759 54891 Hs.445036 NM_017759 HPRD:07894 INO80D - INO80 complex subunit D protein-coding 16-PTNLD14-TUMOR_peak_16004 chr4 52674071 52674124 + 11.95611 NA Intergenic ALR/Alpha|Satellite|centr -35069 NM_015115 23142 Hs.605388 NM_015115 HPRD:13791 DCUN1D4 - DCN1, defective in cullin neddylation 1, domain containing 4 protein-coding 16-PTNLD14-TUMOR_peak_23121 chrX 32418082 32418162 + 11.94978 NA intron (NM_004009, intron 30 of 78) L1P1|LINE|L1 12249 NM_004012 1756 Hs.495912 NM_000109 HPRD:02303 DMD BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272|MRX85 dystrophin protein-coding 16-PTNLD14-TUMOR_peak_16005 chr4 52676271 52676334 + 11.92896 NA Intergenic ALR/Alpha|Satellite|centr -32864 NM_015115 23142 Hs.605388 NM_015115 HPRD:13791 DCUN1D4 - DCN1, defective in cullin neddylation 1, domain containing 4 protein-coding 16-PTNLD14-TUMOR_peak_10855 chr19 53415448 53415504 + 11.92475 NA Intergenic AluY|SINE|Alu -20877 NM_207333 162967 Hs.369632 NM_207333 HPRD:18506 ZNF320 ZFPL zinc finger protein 320 protein-coding 16-PTNLD14-TUMOR_peak_23341 chrX 65961388 65961464 + 11.91571 NA Intergenic L1PA4|LINE|L1 -102286 NM_001199687 60401 Hs.302017 NM_021783 HPRD:02230 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 16-PTNLD14-TUMOR_peak_3808 chr11 28228986 28229037 + 11.91571 NA intron (NM_001297775, intron 3 of 6) L1PA3|LINE|L1 99213 NM_001297775 196074 Hs.243326 NM_152636 HPRD:08750 METTL15 METT5D1 methyltransferase like 15 protein-coding 16-PTNLD14-TUMOR_peak_17878 chr5 167866363 167866414 + 11.86089 NA intron (NM_015238, intron 15 of 22) AluSp|SINE|Alu -47075 NM_002887 5917 Hs.654907 NM_002887 HPRD:00142 RARS ArgRS|DALRD1 arginyl-tRNA synthetase protein-coding 16-PTNLD14-TUMOR_peak_22593 chr9 133550458 133550519 + 11.83531 NA intron (NM_021619, intron 3 of 4) AluSq|SINE|Alu 10507 NM_021619 59335 Hs.495311 NM_021619 HPRD:17900 PRDM12 PFM9 PR domain containing 12 protein-coding 16-PTNLD14-TUMOR_peak_8133 chr16 72963988 72964051 + 11.82012 NA intron (NM_001164766, intron 2 of 8) AluSq2|SINE|Alu 118255 NM_006885 463 Hs.598297 NM_006885 HPRD:00075 ZFHX3 ATBF1|ATBT|ZNF927 zinc finger homeobox 3 protein-coding 16-PTNLD14-TUMOR_peak_2883 chr10 42812929 42812988 + 11.80051 NA Intergenic (CATTC)n|Satellite|Satellite 50535 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 16-PTNLD14-TUMOR_peak_24006 chrY 13851325 13851389 + 11.77059 NA Intergenic (GAATG)n|Satellite|Satellite 682032 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 16-PTNLD14-TUMOR_peak_6025 chr13 51792248 51792303 + 11.75704 NA Intergenic (GAAA)n|Simple_repeat|Simple_repeat -4195 NM_001242312 220108 Hs.71913 NM_145019 HPRD:08704 FAM124A - family with sequence similarity 124A protein-coding 16-PTNLD14-TUMOR_peak_7261 chr15 99514603 99514662 + 11.72887 NA intron (NM_001167902, intron 2 of 4) AluSx|SINE|Alu 34253 NM_001102612 145814 Hs.592021 NM_001102612 ENSG00000183571 PGPEP1L - pyroglutamyl-peptidase I-like protein-coding 16-PTNLD14-TUMOR_peak_23734 chrX 151917548 151917610 + 11.71087 NA TTS (NM_005361) TTS (NM_005361) 2520 NM_153488 266740 Hs.534597 NM_153488 MAGEA2B MAGE2|MAGEA2 melanoma antigen family A, 2B protein-coding 16-PTNLD14-TUMOR_peak_19255 chr7 1236144 1236471 + 11.70410 NA Intergenic G-rich|Low_complexity|Low_complexity 35886 NR_110070 101927021 Hs.529566 NR_110065 LOC101927021 - uncharacterized LOC101927021 ncRNA 16-PTNLD14-TUMOR_peak_4523 chr11 93775447 93775537 + 11.69329 NA intron (NM_001098672, intron 1 of 19) L1PA2|LINE|L1 21114 NM_001098672 341208 Hs.669645 NM_001098672 ENSG00000181333 HEPHL1 - hephaestin-like 1 protein-coding 16-PTNLD14-TUMOR_peak_8488 chr17 8199315 8199368 + 11.69329 NA Intergenic AluY|SINE|Alu -1171 NM_201520 399512 Hs.118918 NM_201520 HPRD:13444 SLC25A35 - solute carrier family 25, member 35 protein-coding 16-PTNLD14-TUMOR_peak_20140 chr7 107410670 107410720 + 11.68027 NA intron (NM_000111, intron 18 of 20) AluJb|SINE|Alu 26553 NR_024199 79872 Hs.592271 NM_024814 HPRD:07590 CBLL1 HAKAI|RNF188 Cbl proto-oncogene-like 1, E3 ubiquitin protein ligase protein-coding 16-PTNLD14-TUMOR_peak_11726 chr2 91697546 91697690 + 11.64468 NA Intergenic (GCTG)n|Simple_repeat|Simple_repeat 150357 NR_027238 654342 Hs.469287 NR_027238 ENSG00000143429 LOC654342 - lymphocyte-specific protein 1 pseudogene pseudo 16-PTNLD14-TUMOR_peak_2531 chr10 17177835 17177986 + 11.64047 NA Intergenic AluSx1|SINE|Alu -6094 NM_001081 8029 Hs.166206 NM_001081 HPRD:04296 CUBN IFCR|MGA1|gp280 cubilin (intrinsic factor-cobalamin receptor) protein-coding 16-PTNLD14-TUMOR_peak_15527 chr3 196006789 196006853 + 11.64047 NA intron (NM_005017, intron 2 of 9) AluSp|SINE|Alu 7763 NM_005017 5130 Hs.135997 NM_005017 HPRD:00438 PCYT1A CCTA|CT|CTA|CTPCT|PCYT1|SMDCRD phosphate cytidylyltransferase 1, choline, alpha protein-coding 16-PTNLD14-TUMOR_peak_23340 chrX 65934558 65934614 + 11.60478 NA Intergenic L1PA2|LINE|L1 -75446 NM_001199687 60401 Hs.302017 NM_021783 HPRD:02230 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 16-PTNLD14-TUMOR_peak_9809 chr19 4910037 4910111 + 11.57165 NA promoter-TSS (NM_013282) promoter-TSS (NM_013282) -31 NM_001290051 29128 Hs.108106 NM_013282 UHRF1 ICBP90|Np95|RNF106|hNP95|hUHRF1|huNp95 ubiquitin-like with PHD and ring finger domains 1 protein-coding 16-PTNLD14-TUMOR_peak_484 chr1 36545133 36545182 + 11.56578 NA Intergenic AluSz6|SINE|Alu -4519 NM_014466 27285 Hs.127111 NM_014466 HPRD:16410 TEKT2 TEKTB1|TEKTIN-T|h-tektin-t tektin 2 (testicular) protein-coding 16-PTNLD14-TUMOR_peak_1167 chr1 116169263 116169318 + 11.51232 NA Intergenic L1PA2|LINE|L1 -15284 NM_001172411 81839 Hs.515130 NM_138959 HPRD:18279 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 16-PTNLD14-TUMOR_peak_20320 chr7 140579613 140579670 + 11.51232 NA intron (NM_004333, intron 1 of 17) AluSx|SINE|Alu 44923 NM_004333 673 Hs.550061 NM_004333 HPRD:01264 BRAF B-RAF1|BRAF1|NS7|RAFB1 B-Raf proto-oncogene, serine/threonine kinase protein-coding 16-PTNLD14-TUMOR_peak_11725 chr2 91696835 91696884 + 11.46218 NA Intergenic (GCTG)n|Simple_repeat|Simple_repeat 151116 NR_027238 654342 Hs.469287 NR_027238 ENSG00000143429 LOC654342 - lymphocyte-specific protein 1 pseudogene pseudo 16-PTNLD14-TUMOR_peak_16433 chr4 140191334 140191391 + 11.45395 NA intron (NM_032623, intron 2 of 3) AluSp|SINE|Alu 10130 NM_032623 84709 Hs.710036 NM_032623 HPRD:17805 MGARP C4orf49|CESP-1|HUMMR|OSAP mitochondria-localized glutamic acid-rich protein protein-coding 16-PTNLD14-TUMOR_peak_5045 chr12 21576695 21576760 + 11.39465 NA Intergenic L1PA2|LINE|L1 -13811 NM_024854 79912 Hs.709545 NM_024854 PYROXD1 - pyridine nucleotide-disulphide oxidoreductase domain 1 protein-coding 16-PTNLD14-TUMOR_peak_9029 chr17 61263905 61263957 + 11.39465 NA intron (NM_025185, intron 3 of 24) AluSq2|SINE|Alu 177033 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 16-PTNLD14-TUMOR_peak_20643 chr8 5081181 5081313 + 11.38787 NA Intergenic AluSx|SINE|Alu -228919 NM_033225 64478 Hs.571466 NM_033225 HPRD:10523 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 16-PTNLD14-TUMOR_peak_4018 chr11 50779649 50779706 + 11.36094 NA Intergenic ALR/Alpha|Satellite|centr 411359 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DEAH (Asp-Glu-Ala-His) box helicase 9 pseudogene pseudo 16-PTNLD14-TUMOR_peak_8416 chr17 6351344 6351405 + 11.34524 NA intron (NM_019013, intron 3 of 5) AluSx|SINE|Alu 3639 NM_019013 54478 Hs.592116 NM_019013 HPRD:07649 FAM64A CATS|RCS1 family with sequence similarity 64, member A protein-coding 16-PTNLD14-TUMOR_peak_4971 chr12 12424536 12424595 + 11.31620 NA Intergenic AluY|SINE|Alu -4754 NM_002336 4040 Hs.584775 NM_002336 HPRD:04617 LRP6 ADCAD2 low density lipoprotein receptor-related protein 6 protein-coding 16-PTNLD14-TUMOR_peak_16046 chr4 60034022 60034086 + 11.31620 NA Intergenic L1P1|LINE|L1 -2057503 NM_001253835 3490 Hs.479808 NM_001553 HPRD:04183 IGFBP7 AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF insulin-like growth factor binding protein 7 protein-coding 16-PTNLD14-TUMOR_peak_11511 chr2 66847146 66847198 + 11.31620 NA intron (NR_110156, intron 1 of 5) L1PA5|LINE|L1 46010 NR_110156 100507073 Hs.667940 NR_110156 LOC100507073 - uncharacterized LOC100507073 ncRNA 16-PTNLD14-TUMOR_peak_22592 chr9 133529353 133529599 + 11.31355 NA Intergenic AluY|SINE|Alu -10505 NM_021619 59335 Hs.495311 NM_021619 HPRD:17900 PRDM12 PFM9 PR domain containing 12 protein-coding 16-PTNLD14-TUMOR_peak_17899 chr5 167968335 167968514 + 11.30044 NA Intergenic AluSx|SINE|Alu 11842 NR_024356 345630 Hs.166262 NR_024356 FBLL1 - fibrillarin-like 1 pseudo 16-PTNLD14-TUMOR_peak_14519 chr3 50121906 50121988 + 11.30044 NA Intergenic SVA_D|Other|Other -4394 NM_005778 10181 Hs.439480 NM_005778 HPRD:06052 RBM5 G15|LUCA15|RMB5 RNA binding motif protein 5 protein-coding 16-PTNLD14-TUMOR_peak_3749 chr11 18834968 18835070 + 11.24674 NA Intergenic AluY|SINE|Alu -20751 NM_001278236 84867 Hs.79092 NM_006906 HPRD:01472 PTPN5 PTPSTEP|STEP protein tyrosine phosphatase, non-receptor type 5 (striatum-enriched) protein-coding 16-PTNLD14-TUMOR_peak_4831 chr12 537412 537471 + 11.22251 NA intron (NM_032358, intron 5 of 12) AluY|SINE|Alu 26700 NM_001130146 84318 Hs.631656 NM_032358 HPRD:17485 CCDC77 - coiled-coil domain containing 77 protein-coding 16-PTNLD14-TUMOR_peak_8001 chr16 58290953 58291185 + 11.22251 NA intron (NM_014157, intron 3 of 8) AluYa5|SINE|Alu 7229 NM_014157 29070 Hs.11614 NM_014157 HPRD:07121 CCDC113 - coiled-coil domain containing 113 protein-coding 16-PTNLD14-TUMOR_peak_11828 chr2 96923380 96923437 + 11.21849 NA intron (NM_017849, intron 2 of 3) AluSx3|SINE|Alu 8343 NM_017849 55654 Hs.164303 NM_017849 TMEM127 - transmembrane protein 127 protein-coding 16-PTNLD14-TUMOR_peak_13920 chr22 21909302 21909354 + 11.18217 NA intron (NM_001256355, intron 1 of 3) AluSx1|SINE|Alu -3578 NM_001128633 150221 Hs.447643 NM_001128633 ENSG00000183246 RIMBP3C RIM-BP3.3|RIMBP3.3 RIMS binding protein 3C protein-coding 16-PTNLD14-TUMOR_peak_7433 chr16 4413770 4413837 + 11.17162 NA intron (NM_024535, intron 14 of 27) AluSq2|SINE|Alu -8046 NM_138440 114990 Hs.372579 NM_138440 HPRD:10587 VASN SLITL2 vasorin protein-coding 16-PTNLD14-TUMOR_peak_2772 chr10 39146051 39146107 + 11.16294 NA Intergenic (GAATG)n|Satellite|Satellite 156352 NR_045000 399746 Hs.742607 NR_045000 ENSG00000227264 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 16-PTNLD14-TUMOR_peak_1057 chr1 103089950 103090228 + 11.11058 NA Intergenic L1PA3|LINE|L1 483963 NM_080630 1301 Hs.523446 NM_001854 HPRD:00375 COL11A1 CO11A1|COLL6|STL2 collagen, type XI, alpha 1 protein-coding 16-PTNLD14-TUMOR_peak_6891 chr15 31281085 31281140 + 11.05490 NA intron (NM_017762, intron 2 of 15) AluSx1|SINE|Alu 2695 NM_017762 54893 Hs.30141 NM_017762 HPRD:07895 MTMR10 - myotubularin related protein 10 protein-coding 16-PTNLD14-TUMOR_peak_3984 chr11 48887328 48887383 + 11.05239 NA Intergenic ALR/Alpha|Satellite|centr -165797 NM_001206626 283116 Hs.448644 NM_001206626 ENSG00000182053 TRIM49B - tripartite motif containing 49B protein-coding 16-PTNLD14-TUMOR_peak_16848 chr5 14512069 14512119 + 11.04207 NA Intergenic AluY|SINE|Alu -69797 NM_019018 54491 Hs.155085 NM_019018 FAM105A NET20 family with sequence similarity 105, member A protein-coding 16-PTNLD14-TUMOR_peak_22199 chr9 94699236 94699293 + 11.04207 NA intron (NM_004560, intron 1 of 8) AluYa5|SINE|Alu 13180 NM_004560 4920 Hs.98255 NM_004560 HPRD:03822 ROR2 BDB|BDB1|NTRKR2 receptor tyrosine kinase-like orphan receptor 2 protein-coding 16-PTNLD14-TUMOR_peak_2666 chr10 32885728 32885784 + 10.99951 NA intron (NM_024688, intron 3 of 22) L1PA5|LINE|L1 29105 NM_024688 79741 Hs.585464 NM_024688 HPRD:10698 CCDC7 BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 16-PTNLD14-TUMOR_peak_9033 chr17 61422848 61422922 + 10.97506 NA intron (NM_025185, intron 10 of 24) AluSp|SINE|Alu 95322 NM_001017917 1534 Hs.355264 NM_001915 HPRD:02485 CYB561 CYB561A1|FRRS2 cytochrome b561 protein-coding 16-PTNLD14-TUMOR_peak_22246 chr9 98957415 98957477 + 10.90920 NA Intergenic AluSx1|SINE|Alu -78753 NM_001256408 158434 Hs.381771 NM_001256408 LOC158434 - uncharacterized LOC158434 protein-coding 16-PTNLD14-TUMOR_peak_4841 chr12 580669 580826 + 10.90505 NA intron (NM_173593, intron 1 of 19) AluSx|SINE|Alu 11204 NM_173593 283358 Hs.504416 NM_173593 HPRD:12514 B4GALNT3 - beta-1,4-N-acetyl-galactosaminyl transferase 3 protein-coding 16-PTNLD14-TUMOR_peak_4051 chr11 54901102 54901157 + 10.89257 NA Intergenic L1PA4|LINE|L1 -128529 NM_024114 79097 Hs.195715 NM_024114 HPRD:15565 TRIM48 RNF101 tripartite motif containing 48 protein-coding 16-PTNLD14-TUMOR_peak_22458 chr9 127087361 127087436 + 10.84554 NA intron (NM_001166171, intron 6 of 10) AluSx|SINE|Alu -28354 NR_027406 100129034 Hs.654980 NR_027406 LOC100129034 - uncharacterized LOC100129034 ncRNA 16-PTNLD14-TUMOR_peak_9417 chr18 14374684 14374747 + 10.84554 NA Intergenic AluYa5|SINE|Alu 37293 NR_026756 284233 Hs.607579 NR_026756 ENSG00000265787 CYP4F35P - cytochrome P450, family 4, subfamily F, polypeptide 35, pseudogene pseudo 16-PTNLD14-TUMOR_peak_14561 chr3 52335623 52335675 + 10.84554 NA Intergenic AluY|SINE|Alu -7325 NR_029677 406925 NR_029677 miRBase:MI0000452 MIR135A1 MIRN135-1|MIRN135A1 microRNA 135a-1 ncRNA 16-PTNLD14-TUMOR_peak_10657 chr19 47025758 47025810 + 10.84062 NA intron (NM_001205281, intron 3 of 3) FLAM_C|SINE|Alu -26615 NM_020709 57469 Hs.7193 NM_020709 ENSG00000204851 PNMAL2 - paraneoplastic Ma antigen family-like 2 protein-coding 16-PTNLD14-TUMOR_peak_17891 chr5 167931734 167931803 + 10.84062 NA intron (NM_002887, intron 9 of 14) AluY|SINE|Alu 18305 NM_002887 5917 Hs.654907 NM_002887 HPRD:00142 RARS ArgRS|DALRD1 arginyl-tRNA synthetase protein-coding 16-PTNLD14-TUMOR_peak_4824 chr12 505294 505392 + 10.82945 NA intron (NM_001130148, intron 1 of 10) AluSx1|SINE|Alu -5398 NM_032358 84318 Hs.631656 NM_032358 HPRD:17485 CCDC77 - coiled-coil domain containing 77 protein-coding 16-PTNLD14-TUMOR_peak_5179 chr12 38070659 38070727 + 10.81890 NA Intergenic ALR/Alpha|Satellite|centr -639864 NM_001013620 144245 Hs.259305 NM_001013620 ALG10B ALG10|KCR1 ALG10B, alpha-1,2-glucosyltransferase protein-coding 16-PTNLD14-TUMOR_peak_6227 chr14 19042613 19042665 + 10.81139 NA Intergenic ALR/Alpha|Satellite|centr -334955 NM_001013354 440153 Hs.534880 NM_001013354 HPRD:18633 OR11H12 - olfactory receptor, family 11, subfamily H, member 12 protein-coding 16-PTNLD14-TUMOR_peak_901 chr1 84151227 84151284 + 10.77883 NA intron (NR_119375, intron 2 of 2) L1PA4|LINE|L1 174974 NR_119374 101927560 Hs.559661 NR_119374 ENSG00000233008 LOC101927560 - uncharacterized LOC101927560 ncRNA 16-PTNLD14-TUMOR_peak_1253 chr1 121483254 121483303 + 10.74919 NA Intergenic ALR/Alpha|Satellite|centr 222368 NR_003955 647121 Hs.697682 NR_003955 EMBP1 - embigin pseudogene 1 pseudo 16-PTNLD14-TUMOR_peak_6948 chr15 41438523 41438573 + 10.71870 NA Intergenic AluSp|SINE|Alu -30104 NM_017553 54617 Hs.292949 NM_017553 HPRD:10024 INO80 INO80A|INOC1|hINO80 INO80 complex subunit protein-coding 16-PTNLD14-TUMOR_peak_7479 chr16 10349006 10349061 + 10.71870 NA Intergenic AluSx3|SINE|Alu -72422 NM_000833 2903 Hs.411472 NM_000833 HPRD:00698 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate receptor, ionotropic, N-methyl D-aspartate 2A protein-coding 16-PTNLD14-TUMOR_peak_22476 chr9 127200847 127200901 + 10.67857 NA Intergenic AluSq2|SINE|Alu -23122 NM_002799 5695 Hs.213470 NM_002799 HPRD:04940 PSMB7 Z proteasome (prosome, macropain) subunit, beta type, 7 protein-coding 16-PTNLD14-TUMOR_peak_1217 chr1 121354858 121354914 + 10.67849 NA Intergenic ALR/Alpha|Satellite|centr 93976 NR_003955 647121 Hs.697682 NR_003955 EMBP1 - embigin pseudogene 1 pseudo 16-PTNLD14-TUMOR_peak_7983 chr16 58139128 58139184 + 10.67529 NA Intergenic AluSc8|SINE|Alu 24140 NM_013242 29105 Hs.532755 NM_013242 HPRD:13616 CFAP20 C16orf80|EVORF|GTL3|fSAP23 cilia and flagella associated protein 20 protein-coding 16-PTNLD14-TUMOR_peak_3880 chr11 36419557 36419615 + 10.65664 NA intron (NM_024841, intron 2 of 9) AluSp|SINE|Alu -2961 NM_001160169 79899 Hs.19987 NM_024841 HPRD:07854 PRR5L PROTOR2 proline rich 5 like protein-coding 16-PTNLD14-TUMOR_peak_18786 chr6 81629324 81629381 + 10.65664 NA Intergenic L1HS|LINE|L1 813008 NM_183050 594 Hs.654441 NM_000056 HPRD:02011 BCKDHB E1B|dJ279A18.1 branched chain keto acid dehydrogenase E1, beta polypeptide protein-coding 16-PTNLD14-TUMOR_peak_23624 chrX 121016462 121016537 + 10.65664 NA Intergenic L1PA3|LINE|L1 835037 NM_012084 2747 Hs.368538 NM_012084 HPRD:02143 GLUD2 GDH2|GLUDP1 glutamate dehydrogenase 2 protein-coding 16-PTNLD14-TUMOR_peak_13915 chr22 21734064 21734115 + 10.64232 NA Intergenic AluSx1|SINE|Alu -3574 NM_001128633 150221 Hs.447643 NM_001128633 ENSG00000183246 RIMBP3C RIM-BP3.3|RIMBP3.3 RIMS binding protein 3C protein-coding 16-PTNLD14-TUMOR_peak_4004 chr11 50651650 50651709 + 10.63854 NA Intergenic ALR/Alpha|Satellite|centr 283361 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DEAH (Asp-Glu-Ala-His) box helicase 9 pseudogene pseudo 16-PTNLD14-TUMOR_peak_20620 chr8 2298478 2298533 + 10.63313 NA Intergenic L1PA3|LINE|L1 181948 NR_125423 101927815 Hs.571467 NR_125423 ENSG00000249694 LOC101927815 - uncharacterized LOC101927815 ncRNA 16-PTNLD14-TUMOR_peak_19659 chr7 61754698 61754753 + 10.60850 NA Intergenic HSATII|Satellite|Satellite 1009709 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 16-PTNLD14-TUMOR_peak_23292 chrX 61829365 61829420 + 10.60779 NA Intergenic ALR/Alpha|Satellite|centr 741826 NM_001012968 139886 Hs.612782 NM_001012968 HPRD:12556 SPIN4 - spindlin family, member 4 protein-coding 16-PTNLD14-TUMOR_peak_8980 chr17 57986613 57986663 + 10.59585 NA intron (NM_001272044, intron 2 of 15) AluSg|SINE|Alu 16231 NM_001272043 6198 Hs.463642 NM_003161 HPRD:10202 RPS6KB1 PS6K|S6K|S6K-beta-1|S6K1|STK14A|p70 S6KA|p70(S6K)-alpha|p70-S6K|p70-alpha ribosomal protein S6 kinase, 70kDa, polypeptide 1 protein-coding 16-PTNLD14-TUMOR_peak_5333 chr12 54609239 54609289 + 10.58370 NA Intergenic AluSq2|SINE|Alu 15996 NR_039851 100616400 NR_039851 miRBase:MI0017335 MIR3198-2 - microRNA 3198-2 ncRNA 16-PTNLD14-TUMOR_peak_630 chr1 43744510 43744578 + 10.56942 NA Intergenic AluY|SINE|Alu 6706 NM_182517 149466 Hs.158963 NM_182517 HPRD:14677 C1orf210 - chromosome 1 open reading frame 210 protein-coding 16-PTNLD14-TUMOR_peak_23951 chrY 13686884 13686941 + 10.54235 NA Intergenic (GAATG)n|Satellite|Satellite 846477 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 16-PTNLD14-TUMOR_peak_11805 chr2 96772530 96772715 + 10.53563 NA Intergenic AluY|SINE|Alu 9362 NM_000682 151 Hs.247686 NM_000682 HPRD:00086 ADRA2B ADRA2L1|ADRA2RL1|ADRARL1|ALPHA2BAR|alpha-2BAR adrenoceptor alpha 2B protein-coding 16-PTNLD14-TUMOR_peak_18476 chr6 34746046 34746098 + 10.53563 NA Intergenic AluY|SINE|Alu -13722 NM_017754 54887 Hs.700656 NM_017754 HPRD:12838 UHRF1BP1 C6orf107|ICBP90|dJ349A12.1 UHRF1 binding protein 1 protein-coding 16-PTNLD14-TUMOR_peak_17665 chr5 140404285 140404339 + 10.53563 NA Intergenic L1PA3|LINE|L1 -26649 NM_013340 29930 Hs.278950 NM_013340 HPRD:08397 PCDHB1 PCDH-BETA1 protocadherin beta 1 protein-coding 16-PTNLD14-TUMOR_peak_4527 chr11 94051004 94051062 + 10.53563 NA Intergenic L1PA3|LINE|L1 12230 NM_001199206 390243 Hs.553758 NM_001080486 ENSG00000183560 FOLR4 Folbp3|JUNO folate receptor 4, delta (putative) protein-coding 16-PTNLD14-TUMOR_peak_13735 chr21 47387719 47387793 + 10.53563 NA Intergenic AluYa5|SINE|Alu -5128 NR_109931 101928796 Hs.130919 NR_109931 LOC101928796 - uncharacterized LOC101928796 ncRNA 16-PTNLD14-TUMOR_peak_5108 chr12 27574245 27574308 + 10.50714 NA 3' UTR (NM_001248005, exon 14 of 14) 3' UTR (NM_001248005, exon 14 of 14) 25291 NR_109975 101928646 Hs.434269 NR_109975 ENSG00000245311 ARNTL2-AS1 - ARNTL2 antisense RNA 1 ncRNA 16-PTNLD14-TUMOR_peak_23137 chrX 33133700 33133751 + 10.50198 NA intron (NM_000109, intron 1 of 78) AluY|SINE|Alu 12819 NM_004010 1756 Hs.495912 NM_000109 HPRD:02303 DMD BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272|MRX85 dystrophin protein-coding 16-PTNLD14-TUMOR_peak_6656 chr14 79651888 79651944 + 10.50198 NA intron (NR_073547, intron 14 of 20) AluY|SINE|Alu -93766 NM_138970 9369 Hs.368307 NM_004796 NRXN3 C14orf60 neurexin 3 protein-coding 16-PTNLD14-TUMOR_peak_21750 chr9 22647423 22647479 + 10.50198 NA intron (NR_038977, intron 1 of 5) AluY|SINE|Alu 1252 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 16-PTNLD14-TUMOR_peak_23672 chrX 133649227 133649277 + 10.50198 NA Intergenic AluSq|SINE|Alu 25040 NR_030587 100126302 NR_030587 miRBase:MI0005531 MIR450B MIRN450B microRNA 450b ncRNA 16-PTNLD14-TUMOR_peak_5971 chr13 40119158 40119212 + 10.50198 NA intron (NM_005780, intron 2 of 3) AluY|SINE|Alu 58171 NM_005780 10186 Hs.507798 NM_005780 HPRD:09464 LHFP - lipoma HMGIC fusion partner protein-coding 16-PTNLD14-TUMOR_peak_17267 chr5 76395511 76395560 + 10.50198 NA intron (NR_024398, intron 2 of 3) AluSx4|SINE|Alu -12505 NM_032367 84327 Hs.584988 NM_032367 ZBED3 - zinc finger, BED-type containing 3 protein-coding 16-PTNLD14-TUMOR_peak_20652 chr8 6209756 6209819 + 10.50198 NA Intergenic AluY|SINE|Alu 54282 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 16-PTNLD14-TUMOR_peak_12516 chr2 204819079 204819131 + 10.50198 NA intron (NM_012092, intron 1 of 4) AluJr4|SINE|Alu 17634 NM_012092 29851 Hs.56247 NM_012092 HPRD:09196 ICOS AILIM|CD278|CVID1 inducible T-cell co-stimulator protein-coding 16-PTNLD14-TUMOR_peak_2495 chr10 14400012 14400072 + 10.50198 NA Intergenic AluSc8|SINE|Alu -27176 NM_018027 55691 Hs.330463 NM_018027 HPRD:13553 FRMD4A FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 16-PTNLD14-TUMOR_peak_24062 chrY 28161569 28161619 + 10.50198 NA Intergenic L1PA5|LINE|L1 286957 NR_002176 474148 Hs.511777 NR_002176 TTTY3B LNCRNA00122|NCRNA00122 testis-specific transcript, Y-linked 3B (non-protein coding) ncRNA 16-PTNLD14-TUMOR_peak_24027 chrY 15587784 15587834 + 10.50198 NA non-coding (NR_047603, exon 3 of 29) non-coding (NR_047603, exon 3 of 29) 4741 NR_047599 7404 Hs.115277 NM_007125 HPRD:02451 UTY KDM6AL|UTY1 ubiquitously transcribed tetratricopeptide repeat containing, Y-linked protein-coding 16-PTNLD14-TUMOR_peak_9182 chr17 75982415 75982467 + 10.50198 NA Intergenic AluSp|SINE|Alu -17877 NM_018996 57690 Hs.569831 NM_018996 HPRD:10026 TNRC6C - trinucleotide repeat containing 6C protein-coding 16-PTNLD14-TUMOR_peak_20126 chr7 105741867 105741917 + 10.50198 NA intron (NM_006754, intron 2 of 5) (C)n|Simple_repeat|Simple_repeat 10899 NM_182715 6856 Hs.80919 NM_006754 HPRD:15459 SYPL1 H-SP1|SYPL synaptophysin-like 1 protein-coding 16-PTNLD14-TUMOR_peak_6915 chr15 35589101 35589150 + 10.50198 NA Intergenic AluYb8|SINE|Alu 59598 NR_003144 723972 Hs.631698 NR_003144 ENSG00000259516 ANP32AP1 - acidic (leucine-rich) nuclear phosphoprotein 32 family, member A pseudogene 1 pseudo 16-PTNLD14-TUMOR_peak_9195 chr17 77027165 77027225 + 10.50198 NA intron (NR_049769, intron 1 of 3) AluY|SINE|Alu -3186 NM_198593 114897 Hs.201398 NM_030968 ENSG00000173918 C1QTNF1 CTRP1|GIP|ZSIG37 C1q and tumor necrosis factor related protein 1 protein-coding 16-PTNLD14-TUMOR_peak_14358 chr3 25775784 25775833 + 10.50198 NA intron (NM_001145293, intron 7 of 11) AluSx|SINE|Alu 49181 NM_018297 55768 Hs.368960 NM_018297 HPRD:10118 NGLY1 CDG1V|PNG1|PNGase N-glycanase 1 protein-coding 16-PTNLD14-TUMOR_peak_7186 chr15 83883604 83883659 + 10.50198 NA Intergenic AluSx|SINE|Alu -6861 NM_016073 50810 Hs.513954 NM_016073 HPRD:17096 HDGFRP3 HDGF-2|HDGF2|HRP-3 hepatoma-derived growth factor, related protein 3 protein-coding 16-PTNLD14-TUMOR_peak_6994 chr15 46721152 46721217 + 10.50198 NA Intergenic L1PA5|LINE|L1 -755219 NM_001198999 80031 Hs.511265 NM_020858 HPRD:10221 SEMA6D - sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D protein-coding 16-PTNLD14-TUMOR_peak_23440 chrX 75270282 75270340 + 10.50198 NA Intergenic L1PA4|LINE|L1 -122453 NM_001300888 51260 Hs.370100 NM_016500 HPRD:06659 PBDC1 CXorf26 polysaccharide biosynthesis domain containing 1 protein-coding 16-PTNLD14-TUMOR_peak_23603 chrX 112166773 112166827 + 10.50198 NA Intergenic L1PA5|LINE|L1 -82757 NM_133265 154796 Hs.528051 NM_133265 HPRD:02327 AMOT - angiomotin protein-coding 16-PTNLD14-TUMOR_peak_19329 chr7 8696263 8696318 + 10.50198 NA intron (NM_152745, intron 2 of 2) L1PA3|LINE|L1 222705 NM_152745 30010 Hs.487564 NM_152745 HPRD:06867 NXPH1 NPH1 neurexophilin 1 protein-coding 16-PTNLD14-TUMOR_peak_23664 chrX 130662480 130662555 + 10.50198 NA Intergenic L1PA5|LINE|L1 -15531 NM_001004486 347468 Hs.553711 NM_001004486 HPRD:18600 OR13H1 ORX1 olfactory receptor, family 13, subfamily H, member 1 protein-coding 16-PTNLD14-TUMOR_peak_23388 chrX 71355816 71355868 + 10.50198 NA intron (NM_001013627, intron 4 of 7) AluSx3|SINE|Alu -4091 NM_001024455 340526 Hs.512180 NM_001024455 HPRD:18594 RGAG4 6430402L03Rik|MAR5|MART5 retrotransposon gag domain containing 4 protein-coding 16-PTNLD14-TUMOR_peak_7248 chr15 99384107 99384181 + 10.50198 NA intron (NM_001291858, intron 2 of 20) AluSx|SINE|Alu 56489 NR_039864 100616432 NR_039864 MIR4714 - microRNA 4714 ncRNA 16-PTNLD14-TUMOR_peak_23130 chrX 33044190 33044272 + 10.50198 NA intron (NM_000109, intron 1 of 78) AluY|SINE|Alu 102313 NM_004010 1756 Hs.495912 NM_000109 HPRD:02303 DMD BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272|MRX85 dystrophin protein-coding 16-PTNLD14-TUMOR_peak_6369 chr14 35473090 35473148 + 10.50198 NA intron (NM_001146282, intron 3 of 14) AluJb|SINE|Alu 21015 NM_001146282 6729 Hs.167535 NM_003136 HPRD:05330 SRP54 - signal recognition particle 54kDa protein-coding 16-PTNLD14-TUMOR_peak_17331 chr5 87552944 87552997 + 10.50198 NA intron (NM_001289007, intron 1 of 12) AluSz|SINE|Alu 11726 NM_001289008 153396 Hs.379972 NM_153354 HPRD:14555 TMEM161B FLB3342|PRO1313 transmembrane protein 161B protein-coding 16-PTNLD14-TUMOR_peak_15328 chr3 171773797 171773851 + 10.50198 NA intron (NM_001135095, intron 1 of 25) AluY|SINE|Alu 15480 NM_001135095 64778 Hs.744888 NM_022763 HPRD:10943 FNDC3B FAD104|PRO4979|YVTM2421 fibronectin type III domain containing 3B protein-coding 16-PTNLD14-TUMOR_peak_6112 chr13 93197481 93197533 + 10.50198 NA intron (NM_004466, intron 7 of 7) L1PA4|LINE|L1 174701 NR_049776 100873969 Hs.577863 NR_046520 ENSG00000235984 GPC5-AS1 - GPC5 antisense RNA 1 ncRNA 16-PTNLD14-TUMOR_peak_12724 chr2 236880200 236880256 + 10.50198 NA intron (NM_001037131, intron 13 of 17) AluY|SINE|Alu 196424 NM_001485 2637 Hs.184945 NM_001485 HPRD:03087 GBX2 - gastrulation brain homeobox 2 protein-coding 16-PTNLD14-TUMOR_peak_12230 chr2 161282722 161282776 + 10.50198 NA intron (NM_016836, intron 1 of 13) (GAAA)n|Simple_repeat|Simple_repeat -18356 NR_039946 100616364 NR_039946 MIR4785 - microRNA 4785 ncRNA 16-PTNLD14-TUMOR_peak_5859 chr12 128440038 128440090 + 10.50198 NA Intergenic AluY|SINE|Alu 40109 NR_046392 100862680 Hs.385496 NR_046392 ENSG00000256193 LINC00507 - long intergenic non-protein coding RNA 507 ncRNA 16-PTNLD14-TUMOR_peak_14769 chr3 90486357 90486409 + 10.50198 NA Intergenic ALR/Alpha|Satellite|centr 1329709 NM_182644 2042 Hs.123642 NM_005233 HPRD:01555 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 16-PTNLD14-TUMOR_peak_5538 chr12 85919804 85919857 + 10.50198 NA Intergenic AluY|SINE|Alu 245794 NM_006982 8092 Hs.41683 NM_006982 HPRD:03316 ALX1 CART1|FND3|HEL23 ALX homeobox 1 protein-coding 16-PTNLD14-TUMOR_peak_7020 chr15 53294099 53294158 + 10.50198 NA Intergenic AluSc8|SINE|Alu -211919 NM_004498 3175 Hs.658573 NM_004498 ONECUT1 HNF-6|HNF6|HNF6A one cut homeobox 1 protein-coding 16-PTNLD14-TUMOR_peak_19126 chr6 159437242 159437294 + 10.50198 NA Intergenic AluJb|SINE|Alu -16070 NM_031924 83861 Hs.154628 NM_031924 HPRD:15279 RSPH3 RSHL2|RSP3|dJ111C20.1 radial spoke 3 homolog (Chlamydomonas) protein-coding 16-PTNLD14-TUMOR_peak_7279 chr15 100781086 100781141 + 10.50198 NA intron (NM_139057, intron 7 of 21) AluSg|SINE|Alu 101070 NM_139057 170691 Hs.513200 NM_139057 HPRD:06332 ADAMTS17 - ADAM metallopeptidase with thrombospondin type 1 motif, 17 protein-coding 16-PTNLD14-TUMOR_peak_22462 chr9 127144681 127144733 + 10.50198 NA intron (NM_002799, intron 6 of 7) AluSx1|SINE|Alu 28955 NR_027406 100129034 Hs.654980 NR_027406 LOC100129034 - uncharacterized LOC100129034 ncRNA 16-PTNLD14-TUMOR_peak_9034 chr17 61478086 61478146 + 10.50198 NA intron (NM_025185, intron 17 of 24) AluSx|SINE|Alu 40091 NM_001017917 1534 Hs.355264 NM_001915 HPRD:02485 CYB561 CYB561A1|FRRS2 cytochrome b561 protein-coding 16-PTNLD14-TUMOR_peak_6136 chr13 101909198 101909258 + 10.50198 NA intron (NM_052867, intron 11 of 43) AluSx3|SINE|Alu 159585 NM_052867 259232 Hs.525146 NM_052867 HPRD:15647 NALCN CanIon|INNFD|VGCNL1|bA430M15.1 sodium leak channel, non-selective protein-coding 16-PTNLD14-TUMOR_peak_8747 chr17 40390712 40390761 + 10.50198 NA intron (NM_012448, intron 1 of 18) AluSg7|SINE|Alu 37688 NM_012448 6777 Hs.595276 NM_012448 HPRD:05037 STAT5B STAT5 signal transducer and activator of transcription 5B protein-coding 16-PTNLD14-TUMOR_peak_3728 chr11 16745273 16745322 + 10.50198 NA Intergenic AluSx1|SINE|Alu -14851 NM_014267 10944 Hs.645792 NM_014267 C11orf58 IMAGE145052|SMAP chromosome 11 open reading frame 58 protein-coding 16-PTNLD14-TUMOR_peak_16009 chr4 53142311 53142369 + 10.50198 NA Intergenic L1PA3|LINE|L1 224843 NM_001297608 132671 Hs.527090 NM_145263 HPRD:14050 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 16-PTNLD14-TUMOR_peak_14782 chr3 93883186 93883237 + 10.50198 NA Intergenic AluY|SINE|Alu -101144 NM_001195643 200895 Hs.718516 NM_176815 HPRD:11246 DHFRL1 DHFRP4 dihydrofolate reductase-like 1 protein-coding 16-PTNLD14-TUMOR_peak_16831 chr5 12591806 12591859 + 10.50198 NA intron (NR_033383, intron 1 of 3) AluSg|SINE|Alu 16863 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 16-PTNLD14-TUMOR_peak_1928 chr1 189472996 189473048 + 10.50198 NA Intergenic AluY|SINE|Alu 973737 NM_199051 339479 Hs.65765 NM_199051 HPRD:16782 BRINP3 DBCCR1L|DBCCR1L1|FAM5C bone morphogenetic protein/retinoic acid inducible neural-specific 3 protein-coding 16-PTNLD14-TUMOR_peak_23135 chrX 33114106 33114163 + 10.50198 NA intron (NM_000109, intron 1 of 78) AluY|SINE|Alu 32410 NM_004010 1756 Hs.495912 NM_000109 HPRD:02303 DMD BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272|MRX85 dystrophin protein-coding 16-PTNLD14-TUMOR_peak_20177 chr7 125631921 125631975 + 10.50198 NA Intergenic AluYa5|SINE|Alu -727603 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 16-PTNLD14-TUMOR_peak_2490 chr10 14275339 14275401 + 10.50198 NA intron (NM_018027, intron 2 of 24) AluSx|SINE|Alu 97496 NM_018027 55691 Hs.330463 NM_018027 HPRD:13553 FRMD4A FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 16-PTNLD14-TUMOR_peak_10536 chr19 40507450 40507533 + 10.48169 NA intron (NM_178544, intron 3 of 6) AluSx1|SINE|Alu 4548 NM_001297763 339327 Hs.125008 NM_178544 HPRD:11726 ZNF546 ZNF49 zinc finger protein 546 protein-coding 16-PTNLD14-TUMOR_peak_10076 chr19 14946462 14946531 + 10.44271 NA Intergenic AluSx1|SINE|Alu 6193 NM_001005190 390892 Hs.553776 NM_001005190 HPRD:17780 OR7A10 BC85395_3|OR19-18 olfactory receptor, family 7, subfamily A, member 10 protein-coding 16-PTNLD14-TUMOR_peak_14618 chr3 63684615 63684665 + 10.43985 NA Intergenic L1PA6|LINE|L1 46296 NM_001080537 132203 Hs.130704 NM_001080537 SNTN S100A1L|S100AL|sentan sentan, cilia apical structure protein protein-coding 16-PTNLD14-TUMOR_peak_7041 chr15 59396247 59396297 + 10.43985 NA Intergenic AluJo|SINE|Alu -1012 NM_004701 9133 Hs.194698 NM_004701 HPRD:04131 CCNB2 HsT17299 cyclin B2 protein-coding 16-PTNLD14-TUMOR_peak_2581 chr10 23796605 23796673 + 10.43433 NA Intergenic L1PA3|LINE|L1 68441 NM_001145373 220213 Hs.499042 NM_001145373 ENSG00000165312 OTUD1 DUBA7|OTDC1 OTU deubiquitinase 1 protein-coding 16-PTNLD14-TUMOR_peak_13497 chr21 14365287 14365336 + 10.41992 NA Intergenic ALR/Alpha|Satellite|centr -45176 NR_026916 149992 Hs.558645 NM_153773 ANKRD30BP2 C21orf99|CT85|CTSP-1|CTSP1 ankyrin repeat domain 30B pseudogene 2 pseudo 16-PTNLD14-TUMOR_peak_13908 chr22 21564965 21565015 + 10.40758 NA Intergenic AluY|SINE|Alu 43798 NR_108107 642633 NM_201565 FAM230B - family with sequence similarity 230, member B (non-protein coding) ncRNA 16-PTNLD14-TUMOR_peak_17869 chr5 167794540 167794595 + 10.40431 NA intron (NM_015238, intron 1 of 22) AluYc|SINE|Alu 75502 NM_001161662 23286 Hs.484047 NM_015238 HPRD:10033 WWC1 HBEBP3|HBEBP36|KIBRA|MEMRYQTL|PPP1R168 WW and C2 domain containing 1 protein-coding 16-PTNLD14-TUMOR_peak_4814 chr12 466738 466788 + 10.40035 NA intron (NM_001042603, intron 5 of 27) AluSx4|SINE|Alu -31753 NM_001130147 84318 Hs.631656 NM_032358 HPRD:17485 CCDC77 - coiled-coil domain containing 77 protein-coding 16-PTNLD14-TUMOR_peak_8588 chr17 22022119 22022166 + 10.38039 NA promoter-TSS (NM_001190452) promoter-TSS (NM_001190452) -295 NM_001190452 100462977 Hs.740185 NM_001190452 ENSG00000256618 MTRNR2L1 HN1 MT-RNR2-like 1 protein-coding 16-PTNLD14-TUMOR_peak_18748 chr6 73078088 73078141 + 10.36784 NA intron (NM_001168411, intron 1 of 5) AluY|SINE|Alu 1682 NM_001168411 22999 Hs.485729 NM_014989 HPRD:09435 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 16-PTNLD14-TUMOR_peak_12194 chr2 156301579 156301638 + 10.36784 NA Intergenic L1PA2|LINE|L1 746515 NM_001260509 3760 Hs.591606 NM_002239 HPRD:03323 KCNJ3 GIRK1|KGA|KIR3.1 potassium inwardly-rectifying channel, subfamily J, member 3 protein-coding 16-PTNLD14-TUMOR_peak_1067 chr1 103135796 103135912 + 10.36784 NA Intergenic AluY|SINE|Alu 438198 NM_080630 1301 Hs.523446 NM_001854 HPRD:00375 COL11A1 CO11A1|COLL6|STL2 collagen, type XI, alpha 1 protein-coding 16-PTNLD14-TUMOR_peak_2738 chr10 39081573 39081628 + 10.34212 NA Intergenic (CATTC)n|Satellite|Satellite 91873 NR_045000 399746 Hs.742607 NR_045000 ENSG00000227264 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 16-PTNLD14-TUMOR_peak_9949 chr19 11225275 11225326 + 10.33924 NA intron (NM_001195799, intron 9 of 16) AluY|SINE|Alu 1150 NR_106946 102465534 NR_106946 MIR6886 hsa-mir-6886 microRNA 6886 ncRNA 16-PTNLD14-TUMOR_peak_17900 chr5 167968629 167968692 + 10.33924 NA Intergenic L1PA3|LINE|L1 12078 NR_024356 345630 Hs.166262 NR_024356 FBLL1 - fibrillarin-like 1 pseudo 16-PTNLD14-TUMOR_peak_8337 chr17 738439 738503 + 10.32005 NA intron (NM_022463, intron 1 of 7) AluY|SINE|Alu 28880 NM_001205319 64359 Hs.527989 NM_022463 HPRD:14858 NXN NRX|TRG-4 nucleoredoxin protein-coding 16-PTNLD14-TUMOR_peak_1053 chr1 103047737 103047789 + 10.31010 NA Intergenic AluY|SINE|Alu 526289 NM_080630 1301 Hs.523446 NM_001854 HPRD:00375 COL11A1 CO11A1|COLL6|STL2 collagen, type XI, alpha 1 protein-coding 16-PTNLD14-TUMOR_peak_18702 chr6 61897057 61897116 + 10.29831 NA Intergenic ALR/Alpha|Satellite|centr -386922 NM_001190706 100463487 NM_001190706 ENSG00000255633 MTRNR2L9 HN9 MT-RNR2-like 9 (pseudogene) protein-coding 16-PTNLD14-TUMOR_peak_1234 chr1 121432355 121432421 + 10.29831 NA Intergenic ALR/Alpha|Satellite|centr 171478 NR_003955 647121 Hs.697682 NR_003955 EMBP1 - embigin pseudogene 1 pseudo 16-PTNLD14-TUMOR_peak_6120 chr13 96023451 96023502 + 10.29765 NA Intergenic AluSx|SINE|Alu -62377 NM_182848 9071 Hs.534377 NM_006984 HPRD:13063 CLDN10 CPETRL3|OSP-L claudin 10 protein-coding 16-PTNLD14-TUMOR_peak_1954 chr1 197323940 197323993 + 10.29765 NA intron (NM_001257966, intron 4 of 9) LTR12C|LTR|ERV1 86632 NR_047564 23418 Hs.126135 NM_012076 HPRD:05019 CRB1 LCA8|RP12 crumbs family member 1, photoreceptor morphogenesis associated protein-coding 16-PTNLD14-TUMOR_peak_11759 chr2 92300325 92300374 + 10.29547 NA Intergenic ALR/Alpha|Satellite|centr 171190 NR_027714 440888 Hs.730239 NM_001032412 ENSG00000226481 ACTR3BP2 FKSG73 ACTR3B pseudogene 2 pseudo 16-PTNLD14-TUMOR_peak_22236 chr9 98799075 98799303 + 10.26378 NA Intergenic AluY|SINE|Alu -15152 NR_024129 100188953 Hs.434310 NR_024129 ENSG00000225194 LINC00092 NCRNA00092|bA346B7.1 long intergenic non-protein coding RNA 92 ncRNA 16-PTNLD14-TUMOR_peak_10081 chr19 14971866 14971918 + 10.26378 NA Intergenic AluSg|SINE|Alu -19203 NM_001005190 390892 Hs.553776 NM_001005190 HPRD:17780 OR7A10 BC85395_3|OR19-18 olfactory receptor, family 7, subfamily A, member 10 protein-coding 16-PTNLD14-TUMOR_peak_23431 chrX 74407038 74407156 + 10.26365 NA Intergenic L1PA5|LINE|L1 -30922 NM_001271699 22 Hs.370480 NM_004299 HPRD:02137 ABCB7 ABC7|ASAT|Atm1p|EST140535 ATP-binding cassette, sub-family B (MDR/TAP), member 7 protein-coding 16-PTNLD14-TUMOR_peak_12526 chr2 204860869 204860919 + 10.22776 NA Intergenic L1PA4|LINE|L1 59423 NM_012092 29851 Hs.56247 NM_012092 HPRD:09196 ICOS AILIM|CD278|CVID1 inducible T-cell co-stimulator protein-coding 16-PTNLD14-TUMOR_peak_5767 chr12 120847479 120847533 + 10.22776 NA Intergenic AluSc8|SINE|Alu -28387 NM_004373 1337 Hs.369624 NM_004373 HPRD:03644 COX6A1 COX6A|COX6AL cytochrome c oxidase subunit VIa polypeptide 1 protein-coding 16-PTNLD14-TUMOR_peak_20664 chr8 7038431 7038484 + 10.22776 NA Intergenic AluY|SINE|Alu 82557 NR_027000 349196 Hs.559040 NM_001025473 LINC00965 - long intergenic non-protein coding RNA 965 ncRNA 16-PTNLD14-TUMOR_peak_11772 chr2 92312139 92312194 + 10.22742 NA Intergenic ALR/Alpha|Satellite|centr 183007 NR_027714 440888 Hs.730239 NM_001032412 ENSG00000226481 ACTR3BP2 FKSG73 ACTR3B pseudogene 2 pseudo 16-PTNLD14-TUMOR_peak_19067 chr6 148738643 148738697 + 10.15832 NA intron (NM_015278, intron 2 of 19) AluSc|SINE|Alu 74941 NM_015278 23328 Hs.193133 NM_015278 HPRD:06408 SASH1 SH3D6A|dJ323M4|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 16-PTNLD14-TUMOR_peak_16300 chr4 113217028 113217079 + 10.15176 NA Intergenic AluSq|SINE|Alu -1446 NM_001253884 80216 Hs.652825 NM_025144 HPRD:09554 ALPK1 8430410J10Rik|LAK alpha-kinase 1 protein-coding 16-PTNLD14-TUMOR_peak_19655 chr7 61740996 61741043 + 10.15081 NA Intergenic HSATII|Satellite|Satellite 1023415 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 16-PTNLD14-TUMOR_peak_22283 chr9 101710740 101710813 + 10.09110 NA intron (NM_001855, intron 2 of 41) AluY|SINE|Alu 4781 NM_001855 1306 Hs.409034 NM_001855 HPRD:00380 COL15A1 - collagen, type XV, alpha 1 protein-coding 16-PTNLD14-TUMOR_peak_19176 chr6 165277580 165277634 + 10.09110 NA Intergenic AluSc8|SINE|Alu 445504 NM_144980 168090 Hs.144734 NM_144980 HPRD:12844 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 16-PTNLD14-TUMOR_peak_22468 chr9 127179730 127179806 + 10.08737 NA Intergenic AluSz|SINE|Alu -2016 NM_002799 5695 Hs.213470 NM_002799 HPRD:04940 PSMB7 Z proteasome (prosome, macropain) subunit, beta type, 7 protein-coding 16-PTNLD14-TUMOR_peak_8422 chr17 6388707 6388758 + 10.08737 NA intron (NM_031220, intron 4 of 19) AluSp|SINE|Alu 40997 NM_019013 54478 Hs.592116 NM_019013 HPRD:07649 FAM64A CATS|RCS1 family with sequence similarity 64, member A protein-coding 16-PTNLD14-TUMOR_peak_14362 chr3 25806827 25806880 + 10.08151 NA intron (NM_001145293, intron 2 of 11) AluSx1|SINE|Alu 18136 NM_018297 55768 Hs.368960 NM_018297 HPRD:10118 NGLY1 CDG1V|PNG1|PNGase N-glycanase 1 protein-coding 16-PTNLD14-TUMOR_peak_19053 chr6 148687808 148687860 + 10.07055 NA intron (NM_015278, intron 1 of 19) AluSg|SINE|Alu 24105 NM_015278 23328 Hs.193133 NM_015278 HPRD:06408 SASH1 SH3D6A|dJ323M4|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 16-PTNLD14-TUMOR_peak_17866 chr5 167782231 167782293 + 10.04335 NA intron (NM_015238, intron 1 of 22) AluSq2|SINE|Alu 63197 NM_001161662 23286 Hs.484047 NM_015238 HPRD:10033 WWC1 HBEBP3|HBEBP36|KIBRA|MEMRYQTL|PPP1R168 WW and C2 domain containing 1 protein-coding 16-PTNLD14-TUMOR_peak_978 chr1 93634138 93634213 + 10.04335 NA intron (NR_030761, intron 1 of 4) AluSc8|SINE|Alu 12071 NM_001167830 50999 Hs.482873 NM_016040 HPRD:13028 TMED5 CGI-100|p28 transmembrane emp24 protein transport domain containing 5 protein-coding 16-PTNLD14-TUMOR_peak_13970 chr22 25022137 25022272 + 10.03756 NA intron (NM_013421, intron 12 of 16) AluY|SINE|Alu -6678 NR_024494 644165 Hs.531306 NR_024494 BCRP3 BCR3|BCRL3|BCRL6 breakpoint cluster region pseudogene 3 pseudo 16-PTNLD14-TUMOR_peak_22170 chr9 89822855 89822948 + 10.02478 NA Intergenic AluYa5|SINE|Alu 59342 NM_001001709 401535 Hs.657740 NM_001001709 HPRD:16988 C9orf170 - chromosome 9 open reading frame 170 protein-coding 16-PTNLD14-TUMOR_peak_22100 chr9 80317755 80317814 + 10.02478 NA Intergenic SVA_B|Other|Other -54552 NM_004297 9630 Hs.657795 NM_004297 HPRD:05095 GNA14 - guanine nucleotide binding protein (G protein), alpha 14 protein-coding 16-PTNLD14-TUMOR_peak_2336 chr1 242722762 242722814 + 10.02478 NA Intergenic AluY|SINE|Alu -34790 NM_152666 200150 Hs.672452 NM_152666 HPRD:08812 PLD5 PLDC phospholipase D family, member 5 protein-coding 16-PTNLD14-TUMOR_peak_20440 chr7 150203402 150203485 + 9.99056 NA Intergenic SVA_D|Other|Other -8502 NM_153236 168537 Hs.647074 NM_153236 HPRD:17039 GIMAP7 IAN7|hIAN7 GTPase, IMAP family member 7 protein-coding 16-PTNLD14-TUMOR_peak_429 chr1 35065747 35065806 + 9.99056 NA Intergenic AluSx4|SINE|Alu -154872 NM_005268 2709 Hs.198249 NM_005268 HPRD:06840 GJB5 CX31.1 gap junction protein, beta 5, 31.1kDa protein-coding 16-PTNLD14-TUMOR_peak_6261 chr14 21200194 21200288 + 9.99056 NA Intergenic AluSq|SINE|Alu -13858 NM_006683 10876 Hs.304757 NM_006683 HPRD:13289 EDDM3A EP3A|FAM12A|HE3-ALPHA|HE3A|HE3ALPHA|RAM1 epididymal protein 3A protein-coding 16-PTNLD14-TUMOR_peak_7827 chr16 33894373 33894421 + 9.98991 NA Intergenic HSATII|Satellite|Satellite 68106 NR_038368 649159 Hs.532675 NM_001040069 ENSG00000256642 LINC00273 NCRNA00273|TOP long intergenic non-protein coding RNA 273 ncRNA 16-PTNLD14-TUMOR_peak_20543 chr7 157795982 157796075 + 9.97393 NA intron (NM_130842, intron 10 of 21) AluY|SINE|Alu 148751 NR_038966 100506585 Hs.661265 NR_038966 ENSG00000233038 LOC100506585 - uncharacterized LOC100506585 ncRNA 16-PTNLD14-TUMOR_peak_23798 chrY 978861 978914 + 9.95848 NA Intergenic AluSx|SINE|Alu 302729 NM_001012288 64109 Hs.287729 NM_022148 HPRD:02288 CRLF2 CRL2|CRLF2Y|TSLPR cytokine receptor-like factor 2 protein-coding 16-PTNLD14-TUMOR_peak_13622 chr21 38386368 38386479 + 9.95848 NA intron (NM_018962, intron 3 of 3) AluSq2|SINE|Alu 7560 NM_018962 53820 Hs.254560 NM_018962 HPRD:10923 RIPPLY3 DSCR6 ripply transcriptional repressor 3 protein-coding 16-PTNLD14-TUMOR_peak_2991 chr10 54051576 54051629 + 9.95848 NA intron (NM_006258, intron 17 of 17) L1PA3|LINE|L1 22286 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 16-PTNLD14-TUMOR_peak_23030 chrX 1028861 1028914 + 9.95848 NA Intergenic AluSx|SINE|Alu 302729 NM_022148 64109 Hs.287729 NM_022148 HPRD:02288 CRLF2 CRL2|CRLF2Y|TSLPR cytokine receptor-like factor 2 protein-coding 16-PTNLD14-TUMOR_peak_9035 chr17 61508341 61508396 + 9.94828 NA Intergenic AluSp|SINE|Alu 9839 NM_001017917 1534 Hs.355264 NM_001915 HPRD:02485 CYB561 CYB561A1|FRRS2 cytochrome b561 protein-coding 16-PTNLD14-TUMOR_peak_23232 chrX 56608869 56608919 + 9.90398 NA Intergenic L1PA3|LINE|L1 18868 NM_013444 29978 Hs.179309 NM_013444 HPRD:02224 UBQLN2 ALS15|CHAP1|DSK2|N4BP4|PLIC2 ubiquilin 2 protein-coding 16-PTNLD14-TUMOR_peak_19263 chr7 1751982 1752036 + 9.90398 NA intron (NM_001128636, intron 1 of 1) AluY|SINE|Alu 3211 NM_001128636 392617 Hs.42896 NM_001128636 ENSG00000225968 ELFN1 PPP1R28 extracellular leucine-rich repeat and fibronectin type III domain containing 1 protein-coding 16-PTNLD14-TUMOR_peak_8404 chr17 6318611 6318664 + 9.89919 NA Intergenic AluSq2|SINE|Alu 19815 NM_001285402 23746 Hs.279887 NM_014336 HPRD:05092 AIPL1 AIPL2|LCA4 aryl hydrocarbon receptor interacting protein-like 1 protein-coding 16-PTNLD14-TUMOR_peak_21208 chr8 99977274 99977324 + 9.89364 NA Intergenic AluY|SINE|Alu 20668 NM_053001 116039 Hs.253247 NM_053001 HPRD:17806 OSR2 - odd-skipped related transciption factor 2 protein-coding 16-PTNLD14-TUMOR_peak_15262 chr3 159145434 159145490 + 9.88491 NA intron (NM_001197108, intron 1 of 6) L1PA3|LINE|L1 145027 NR_037483 100500803 NR_037483 MIR3919 - microRNA 3919 ncRNA 16-PTNLD14-TUMOR_peak_22819 chrUn_gl000216 135953 136009 + 9.85561 NA NA BSR/Beta|Satellite|Satellite NA NA 16-PTNLD14-TUMOR_peak_5748 chr12 118317676 118317734 + 9.82900 NA intron (NM_173598, intron 1 of 19) AluSp|SINE|Alu 88323 NM_173598 283455 Hs.375836 NM_173598 HPRD:13952 KSR2 - kinase suppressor of ras 2 protein-coding 16-PTNLD14-TUMOR_peak_8132 chr16 72957303 72957353 + 9.82900 NA intron (NM_001164766, intron 2 of 8) AluJb|SINE|Alu 124946 NM_006885 463 Hs.598297 NM_006885 HPRD:00075 ZFHX3 ATBF1|ATBT|ZNF927 zinc finger homeobox 3 protein-coding 16-PTNLD14-TUMOR_peak_18120 chr6 7552503 7552552 + 9.82900 NA intron (NM_001008844, intron 1 of 23) AluSz|SINE|Alu 10657 NM_004415 1832 Hs.519873 NM_004415 HPRD:00513 DSP DP|DPI|DPII desmoplakin protein-coding 16-PTNLD14-TUMOR_peak_18200 chr6 16038051 16038330 + 9.81771 NA Intergenic AluY|SINE|Alu -91127 NM_013262 29116 Hs.484738 NM_013262 HPRD:17621 MYLIP IDOL|MIR myosin regulatory light chain interacting protein protein-coding 16-PTNLD14-TUMOR_peak_19643 chr7 61607658 61607726 + 9.78666 NA Intergenic ALR/Alpha|Satellite|centr 1156742 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 16-PTNLD14-TUMOR_peak_16833 chr5 13628572 13628629 + 9.78173 NA Intergenic AluSx|SINE|Alu 315989 NM_001369 1767 Hs.212360 NM_001369 HPRD:04514 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein, axonemal, heavy chain 5 protein-coding 16-PTNLD14-TUMOR_peak_16178 chr4 85225717 85225777 + 9.78173 NA Intergenic L1PA2|LINE|L1 193640 NM_006168 4825 Hs.546270 NM_006168 NKX6-1 NKX6.1|NKX6A NK6 homeobox 1 protein-coding 16-PTNLD14-TUMOR_peak_13794 chr22 18763859 18763909 + 9.78166 NA intron (NR_003267, intron 8 of 12) AluY|SINE|Alu 15590 NR_003267 2679 Hs.595809 NR_003267 ENSG00000197421 GGT3P GGT3 gamma-glutamyltransferase 3 pseudogene pseudo 16-PTNLD14-TUMOR_peak_22374 chr9 116249645 116249695 + 9.77598 NA intron (NM_001282923, intron 5 of 22) AluYb8|SINE|Alu -14037 NM_130795 5998 Hs.494875 NM_017790 HPRD:03720 RGS3 C2PA|RGP3 regulator of G-protein signaling 3 protein-coding 16-PTNLD14-TUMOR_peak_21167 chr8 89702216 89702280 + 9.76673 NA Intergenic L1HS|LINE|L1 -362531 NM_005941 4325 Hs.492187 NM_005941 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 (membrane-inserted) protein-coding 16-PTNLD14-TUMOR_peak_20674 chr8 7954639 7954704 + 9.76673 NA Intergenic (CA)n|Simple_repeat|Simple_repeat -8060 NR_031689 100302186 NR_031689 miRBase:MI0006423 MIR548I3 MIR548I-3|MIRN548I3|hsa-mir-548i-3 microRNA 548i-3 ncRNA 16-PTNLD14-TUMOR_peak_21689 chr9 11406149 11406233 + 9.76673 NA Intergenic AluSp|SINE|Alu 792985 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 16-PTNLD14-TUMOR_peak_9824 chr19 5955222 5955272 + 9.76673 NA intron (NM_007322, intron 2 of 16) AluSg|SINE|Alu 23073 NM_001300865 8498 Hs.531752 NM_003624 HPRD:04508 RANBP3 - RAN binding protein 3 protein-coding 16-PTNLD14-TUMOR_peak_5758 chr12 120107120 120107172 + 9.73160 NA intron (NM_006253, intron 1 of 6) AluY|SINE|Alu 1385 NM_006253 5564 Hs.741184 NM_006253 HPRD:04116 PRKAB1 AMPK|HAMPKb protein kinase, AMP-activated, beta 1 non-catalytic subunit protein-coding 16-PTNLD14-TUMOR_peak_5029 chr12 19772280 19772349 + 9.73160 NA Intergenic AluY|SINE|Alu 178799 NM_001267043 121536 Hs.126497 NM_153207 AEBP2 - AE binding protein 2 protein-coding 16-PTNLD14-TUMOR_peak_15290 chr3 166998448 166998538 + 9.73160 NA intron (NM_001199201, intron 20 of 21) L1PA3|LINE|L1 99578 NM_001199202 79740 Hs.478143 NM_024687 HPRD:08015 ZBBX - zinc finger, B-box domain containing protein-coding 16-PTNLD14-TUMOR_peak_14646 chr3 66886408 66886467 + 9.73160 NA Intergenic AluSc|SINE|Alu -162290 NM_032505 84541 Hs.116665 NM_032505 HPRD:18138 KBTBD8 TA-KRP kelch repeat and BTB (POZ) domain containing 8 protein-coding 16-PTNLD14-TUMOR_peak_23835 chrY 7439788 7439839 + 9.68871 NA Intergenic L1PA3|LINE|L1 129475 NR_001552 252948 Hs.522848 NR_001552 ENSG00000225520 TTTY16 NCRNA00139 testis-specific transcript, Y-linked 16 (non-protein coding) ncRNA 16-PTNLD14-TUMOR_peak_2343 chr1 244142851 244143057 + 9.68303 NA intron (NR_033883, intron 2 of 11) CpG 62250 NR_033883 339529 Hs.209374 NR_033883 ENSG00000226828 LOC339529 - uncharacterized LOC339529 ncRNA 16-PTNLD14-TUMOR_peak_15539 chr3 196103156 196103214 + 9.68303 NA intron (NM_015562, intron 5 of 10) AluSx|SINE|Alu -37894 NM_001204898 116211 Hs.733264 NM_138461 HPRD:14013 TM4SF19 - transmembrane 4 L six family member 19 protein-coding 16-PTNLD14-TUMOR_peak_8958 chr17 56651931 56651987 + 9.68303 NA intron (NM_198393, intron 22 of 32) AluSc|SINE|Alu -30226 NM_001038704 284083 Hs.646574 NM_001038704 HPRD:08269 C17orf47 - chromosome 17 open reading frame 47 protein-coding 16-PTNLD14-TUMOR_peak_17867 chr5 167788978 167789033 + 9.68303 NA intron (NM_015238, intron 1 of 22) AluSq|SINE|Alu 69940 NM_001161662 23286 Hs.484047 NM_015238 HPRD:10033 WWC1 HBEBP3|HBEBP36|KIBRA|MEMRYQTL|PPP1R168 WW and C2 domain containing 1 protein-coding 16-PTNLD14-TUMOR_peak_9421 chr18 14820875 14820932 + 9.68303 NA intron (NM_001145029, intron 24 of 35) L1PA2|LINE|L1 -9262 NR_036153 100422907 NR_036153 MIR3156-2 - microRNA 3156-2 ncRNA 16-PTNLD14-TUMOR_peak_21298 chr8 113225855 113225917 + 9.68303 NA Intergenic AluYb8|SINE|Alu -429836 NR_031745 100302225 NR_031745 miRBase:MI0010487 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 16-PTNLD14-TUMOR_peak_9745 chr19 1690116 1690167 + 9.64845 NA Intergenic AluY|SINE|Alu -37813 NM_003200 6929 Hs.371282 NM_003200 HPRD:00918 TCF3 E2A|E47|ITF1|TCF-3|VDIR|bHLHb21 transcription factor 3 protein-coding 16-PTNLD14-TUMOR_peak_2382 chr10 341490 341540 + 9.64471 NA intron (NM_014974, intron 32 of 36) AluYk4|SINE|Alu 115581 NM_001202468 10771 Hs.292265 NM_006624 HPRD:09830 ZMYND11 BRAM1|BS69 zinc finger, MYND-type containing 11 protein-coding 16-PTNLD14-TUMOR_peak_8682 chr17 29853858 29853912 + 9.64471 NA intron (NM_032932, intron 10 of 14) AluSc|SINE|Alu -8016 NR_039877 100616248 NR_039877 miRBase:MI0017361 MIR4724 - microRNA 4724 ncRNA 16-PTNLD14-TUMOR_peak_2965 chr10 51005283 51005335 + 9.64471 NA Intergenic AluY|SINE|Alu -34884 NM_001143996 55753 Hs.17860 NM_018245 HPRD:07704 OGDHL - oxoglutarate dehydrogenase-like protein-coding 16-PTNLD14-TUMOR_peak_12275 chr2 169094003 169094064 + 9.64471 NA intron (NM_013233, intron 1 of 17) L1PA4|LINE|L1 10072 NM_013233 27347 Hs.276271 NM_013233 HPRD:09627 STK39 DCHT|PASK|SPAK serine threonine kinase 39 protein-coding 16-PTNLD14-TUMOR_peak_12997 chr20 29825186 29825247 + 9.61901 NA Intergenic (GAATG)n|Satellite|Satellite -20251 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin, beta 115 protein-coding 16-PTNLD14-TUMOR_peak_4830 chr12 522195 522495 + 9.59472 NA intron (NM_032358, intron 4 of 12) AluY|SINE|Alu 11604 NM_001130146 84318 Hs.631656 NM_032358 HPRD:17485 CCDC77 - coiled-coil domain containing 77 protein-coding 16-PTNLD14-TUMOR_peak_15308 chr3 169552093 169552144 + 9.58393 NA intron (NM_001080460, intron 4 of 4) AluSz|SINE|Alu 12408 NM_001080460 344657 Hs.319484 NM_001080460 ENSG00000188306 LRRIQ4 LRRC64 leucine-rich repeats and IQ motif containing 4 protein-coding 16-PTNLD14-TUMOR_peak_755 chr1 53084924 53084976 + 9.58393 NA Intergenic AluSz6|SINE|Alu -14116 NM_001042693 348378 Hs.424589 NM_182621 HPRD:14678 FAM159A PRO7171|WWLS2783 family with sequence similarity 159, member A protein-coding 16-PTNLD14-TUMOR_peak_3796 chr11 27421257 27421353 + 9.58393 NA intron (NM_018490, intron 2 of 17) AluSx1|SINE|Alu -36510 NM_080654 91057 Hs.143733 NM_030771 HPRD:14868 CCDC34 NY-REN-41|RAMA3 coiled-coil domain containing 34 protein-coding 16-PTNLD14-TUMOR_peak_11889 chr2 105353546 105353638 + 9.58393 NA Intergenic AluY|SINE|Alu 20585 NR_038231 284998 Hs.410180 NR_038231 ENSG00000234177 LINC01114 PANCAT long intergenic non-protein coding RNA 1114 ncRNA 16-PTNLD14-TUMOR_peak_15033 chr3 131127193 131127245 + 9.58393 NA Intergenic L1HS|LINE|L1 26594 NR_033268 131870 Hs.282050 NM_152395 HPRD:08097 NUDT16 - nudix (nucleoside diphosphate linked moiety X)-type motif 16 protein-coding 16-PTNLD14-TUMOR_peak_9409 chr18 13798402 13798461 + 9.57074 NA Intergenic AluSx|SINE|Alu -27112 NM_005913 4161 Hs.248145 NM_005913 HPRD:08965 MC5R MC2 melanocortin 5 receptor protein-coding 16-PTNLD14-TUMOR_peak_12084 chr2 132996824 132996871 + 9.56210 NA intron (NR_027020, intron 1 of 4) ALR/Alpha|Satellite|centr 17806 NR_031608 100313824 NR_031608 miRBase:MI0006336 MIR663B MIRN663B microRNA 663b ncRNA 16-PTNLD14-TUMOR_peak_13733 chr21 47366904 47366955 + 9.54498 NA Intergenic AluSx|SINE|Alu -25955 NR_109931 101928796 Hs.130919 NR_109931 LOC101928796 - uncharacterized LOC101928796 ncRNA 16-PTNLD14-TUMOR_peak_2786 chr10 42357301 42357363 + 9.53828 NA Intergenic (CATTC)n|Satellite|Satellite 506161 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 16-PTNLD14-TUMOR_peak_15006 chr3 128942896 128942962 + 9.53646 NA Intergenic AluSc|SINE|Alu -25524 NM_016128 22820 Hs.518250 NM_016128 HPRD:09887 COPG1 COPG coatomer protein complex, subunit gamma 1 protein-coding 16-PTNLD14-TUMOR_peak_18010 chr5 179516318 179516369 + 9.53082 NA Intergenic AluSx|SINE|Alu -17225 NM_018434 55819 Hs.484363 NM_018434 HPRD:11504 RNF130 G1RZFP|GOLIATH|GP ring finger protein 130 protein-coding 16-PTNLD14-TUMOR_peak_5849 chr12 126887296 126887358 + 9.52594 NA Intergenic AluSc8|SINE|Alu -39700 NR_015398 100128554 Hs.408255 NR_015398 ENSG00000214043 LOC100128554 - uncharacterized LOC100128554 ncRNA 16-PTNLD14-TUMOR_peak_2334 chr1 242261404 242261466 + 9.46732 NA intron (NM_001195812, intron 8 of 8) L1PA4|LINE|L1 -99050 NM_001004343 440738 Hs.534971 NM_001004343 HPRD:14226 MAP1LC3C ATG8J|LC3C microtubule-associated protein 1 light chain 3 gamma protein-coding 16-PTNLD14-TUMOR_peak_4011 chr11 50738529 50738669 + 9.45022 NA Intergenic ALR/Alpha|Satellite|centr 370281 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DEAH (Asp-Glu-Ala-His) box helicase 9 pseudogene pseudo 16-PTNLD14-TUMOR_peak_15537 chr3 196073213 196073264 + 9.44348 NA Intergenic AluSx1|SINE|Alu -7947 NM_001204898 116211 Hs.733264 NM_138461 HPRD:14013 TM4SF19 - transmembrane 4 L six family member 19 protein-coding 16-PTNLD14-TUMOR_peak_23989 chrY 13812853 13812900 + 9.44196 NA Intergenic (GAATG)n|Satellite|Satellite 720513 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 16-PTNLD14-TUMOR_peak_9282 chr17_gl000204_random 49004 49064 + 9.40958 NA NA AluSx|SINE|Alu NA NA 16-PTNLD14-TUMOR_peak_1924 chr1 188056530 188056602 + 9.40958 NA Intergenic AluYa5|SINE|Alu 1258534 NM_024420 5321 Hs.497200 NM_024420 HPRD:08986 PLA2G4A PLA2G4|cPLA2-alpha phospholipase A2, group IVA (cytosolic, calcium-dependent) protein-coding 16-PTNLD14-TUMOR_peak_17872 chr5 167806468 167806523 + 9.40958 NA intron (NM_015238, intron 2 of 22) AluSq2|SINE|Alu 87430 NM_001161662 23286 Hs.484047 NM_015238 HPRD:10033 WWC1 HBEBP3|HBEBP36|KIBRA|MEMRYQTL|PPP1R168 WW and C2 domain containing 1 protein-coding 16-PTNLD14-TUMOR_peak_12014 chr2 124391951 124392007 + 9.40958 NA Intergenic L1PA3|LINE|L1 -390885 NM_130773 129684 Hs.660653 NM_130773 HPRD:16732 CNTNAP5 caspr5 contactin associated protein-like 5 protein-coding 16-PTNLD14-TUMOR_peak_9748 chr19 1713920 1713969 + 9.39516 NA Intergenic AluY|SINE|Alu -39718 NM_001080488 390874 Hs.654347 NM_001080488 ONECUT3 OC3 one cut homeobox 3 protein-coding 16-PTNLD14-TUMOR_peak_12344 chr2 180065102 180065150 + 9.39516 NA intron (NM_178123, intron 1 of 17) L1PA3|LINE|L1 64224 NM_178123 91404 Hs.30977 NM_178123 HPRD:11549 SESTD1 SOLO SEC14 and spectrin domains 1 protein-coding 16-PTNLD14-TUMOR_peak_11093 chr2 1569598 1569780 + 9.37329 NA Intergenic (CAGC)n|Simple_repeat|Simple_repeat 151509 NM_175721 7173 Hs.467554 NM_000547 HPRD:06000 TPO MSA|TDH2A|TPX thyroid peroxidase protein-coding 16-PTNLD14-TUMOR_peak_22287 chr9 101830507 101830685 + 9.35236 NA intron (NM_001855, intron 40 of 41) AluSp|SINE|Alu -36816 NM_001130916 7046 Hs.494622 NM_004612 HPRD:01822 TGFBR1 AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TGFR-1 transforming growth factor, beta receptor 1 protein-coding 16-PTNLD14-TUMOR_peak_19072 chr6 148753335 148753387 + 9.34887 NA intron (NM_015278, intron 2 of 19) AluSp|SINE|Alu 89632 NM_015278 23328 Hs.193133 NM_015278 HPRD:06408 SASH1 SH3D6A|dJ323M4|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 16-PTNLD14-TUMOR_peak_17031 chr5 46329816 46329864 + 9.31357 NA Intergenic ALR/Alpha|Satellite|centr -633620 NM_021072 348980 Hs.353176 NM_021072 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide-gated potassium channel 1 protein-coding 16-PTNLD14-TUMOR_peak_17074 chr5 49511654 49511703 + 9.31075 NA Intergenic ALR/Alpha|Satellite|centr 225556 NM_198449 133418 Hs.561411 NM_198449 HPRD:13271 EMB GP70 embigin protein-coding 16-PTNLD14-TUMOR_peak_9422 chr18 14822981 14823029 + 9.30233 NA intron (NM_001145029, intron 26 of 35) AluYb8|SINE|Alu -7160 NR_036153 100422907 NR_036153 MIR3156-2 - microRNA 3156-2 ncRNA 16-PTNLD14-TUMOR_peak_4844 chr12 589294 589346 + 9.30233 NA intron (NM_173593, intron 1 of 19) AluY|SINE|Alu 19777 NM_173593 283358 Hs.504416 NM_173593 HPRD:12514 B4GALNT3 - beta-1,4-N-acetyl-galactosaminyl transferase 3 protein-coding 16-PTNLD14-TUMOR_peak_16570 chr4 160444805 160444980 + 9.29600 NA Intergenic SVA_F|Other|Other 255894 NM_014247 9693 Hs.744884 NM_014247 ENSG00000109756 RAPGEF2 CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|Rap-GEP|nRap GEP Rap guanine nucleotide exchange factor (GEF) 2 protein-coding 16-PTNLD14-TUMOR_peak_3546 chr11 1078814 1079536 + 9.27813 NA intron (NM_002457, intron 6 of 49) intron (NM_002457, intron 6 of 49) 4300 NM_002457 4583 Hs.315 NM_002457 HPRD:11828 MUC2 MLP|MUC-2|SMUC mucin 2, oligomeric mucus/gel-forming protein-coding 16-PTNLD14-TUMOR_peak_2289 chr1 235956014 235956111 + 9.27813 NA intron (NM_001301365, intron 11 of 52) AluSq2|SINE|Alu 60298 NR_031718 100302139 NR_031718 miRBase:MI0007258 MIR1537 MIRN1537|hsa-mir-1537 microRNA 1537 ncRNA 16-PTNLD14-TUMOR_peak_4828 chr12 515853 515942 + 9.27813 NA intron (NM_001130147, intron 2 of 11) AluSx|SINE|Alu 5156 NM_001130146 84318 Hs.631656 NM_032358 HPRD:17485 CCDC77 - coiled-coil domain containing 77 protein-coding 16-PTNLD14-TUMOR_peak_9439 chr18 18516563 18516626 + 9.27145 NA Intergenic ALR/Alpha|Satellite|centr 175218 NM_005406 6093 Hs.306307 NM_005406 ROCK1 P160ROCK|ROCK-I Rho-associated, coiled-coil containing protein kinase 1 protein-coding 16-PTNLD14-TUMOR_peak_2530 chr10 17176012 17176069 + 9.25758 NA Intergenic AluY|SINE|Alu -4224 NM_001081 8029 Hs.166206 NM_001081 HPRD:04296 CUBN IFCR|MGA1|gp280 cubilin (intrinsic factor-cobalamin receptor) protein-coding 16-PTNLD14-TUMOR_peak_23228 chrX 56464839 56464890 + 9.22028 NA Intergenic L1PA3|LINE|L1 -125162 NM_013444 29978 Hs.179309 NM_013444 HPRD:02224 UBQLN2 ALS15|CHAP1|DSK2|N4BP4|PLIC2 ubiquilin 2 protein-coding 16-PTNLD14-TUMOR_peak_15402 chr3 183797717 183797770 + 9.16713 NA Intergenic AluSx|SINE|Alu -17109 NM_001256613 285242 Hs.449179 NM_182589 HPRD:17122 HTR3E 5-HT3-E|5-HT3E|5-HT3c1 5-hydroxytryptamine (serotonin) receptor 3E, ionotropic protein-coding 16-PTNLD14-TUMOR_peak_5157 chr12 34844310 34844359 + 9.13294 NA Intergenic ALR/Alpha|Satellite|centr 669118 NM_032834 84920 Hs.102971 NM_032834 ALG10 ALG10A|DIE2|KCR1 ALG10, alpha-1,2-glucosyltransferase protein-coding 16-PTNLD14-TUMOR_peak_4746 chr11 128300348 128300409 + 9.13064 NA Intergenic L1PA5|LINE|L1 91827 NM_005238 2113 Hs.369438 NM_005238 HPRD:01260 ETS1 ETS-1|EWSR2|p54 v-ets avian erythroblastosis virus E26 oncogene homolog 1 protein-coding 16-PTNLD14-TUMOR_peak_5542 chr12 87313229 87313286 + 9.13064 NA Intergenic L1PA4|LINE|L1 -80576 NM_013244 25834 Hs.589093 NM_013244 HPRD:09575 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family, member C protein-coding 16-PTNLD14-TUMOR_peak_12890 chr20 17532403 17532460 + 9.10785 NA intron (NM_001278606, intron 1 of 8) AluSq2|SINE|Alu 7174 NM_001278607 631 Hs.129702 NM_001195 HPRD:04494 BFSP1 CP115|CP94|CTRCT33|LIFL-H beaded filament structural protein 1, filensin protein-coding 16-PTNLD14-TUMOR_peak_11842 chr2 97385530 97385582 + 9.07664 NA intron (NR_024518, intron 3 of 7) AluSg|SINE|Alu 20257 NR_024521 81562 Hs.655743 NM_030805 HPRD:17286 LMAN2L VIPL lectin, mannose-binding 2-like protein-coding 16-PTNLD14-TUMOR_peak_5416 chr12 61865797 61865852 + 9.07664 NA Intergenic AluYa5|SINE|Alu 720796 NM_178539 338811 Hs.269745 NM_178539 HPRD:16876 FAM19A2 TAFA-2|TAFA2 family with sequence similarity 19 (chemokine (C-C motif)-like), member A2 protein-coding 16-PTNLD14-TUMOR_peak_21010 chr8 55606311 55606374 + 9.07664 NA Intergenic L1PA3|LINE|L1 77715 NM_006269 6101 Hs.732820 NM_006269 HPRD:04896 RP1 DCDC4A|ORP1 retinitis pigmentosa 1 (autosomal dominant) protein-coding 16-PTNLD14-TUMOR_peak_23513 chrX 89617482 89617538 + 9.07112 NA Intergenic AluSx3|SINE|Alu 440570 NM_138960 90316 Hs.592220 NM_138960 HPRD:02328 TGIF2LX TGIFLX TGFB-induced factor homeobox 2-like, X-linked protein-coding 16-PTNLD14-TUMOR_peak_4851 chr12 650015 650198 + 9.06908 NA intron (NM_173593, intron 3 of 19) AluY|SINE|Alu 69473 NM_001294345 4815 Hs.655804 NM_016533 HPRD:09530 NINJ2 - ninjurin 2 protein-coding 16-PTNLD14-TUMOR_peak_6060 chr13 68167386 68167434 + 9.06908 NA Intergenic L1PA6|LINE|L1 -362942 NM_203487 5101 Hs.654709 NM_020403 HPRD:04661 PCDH9 - protocadherin 9 protein-coding 16-PTNLD14-TUMOR_peak_19175 chr6 165266563 165266610 + 9.06908 NA Intergenic AluSc|SINE|Alu 456525 NM_144980 168090 Hs.144734 NM_144980 HPRD:12844 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 16-PTNLD14-TUMOR_peak_6667 chr14 83114354 83114403 + 9.06908 NA Intergenic AluSc8|SINE|Alu -1024973 NR_110074 101928559 Hs.525499 NR_110074 ENSG00000258977 LINC01467 - long intergenic non-protein coding RNA 1467 ncRNA 16-PTNLD14-TUMOR_peak_3334 chr10 115897793 115897847 + 9.06908 NA intron (NM_018017, intron 6 of 15) AluSp|SINE|Alu 36118 NR_031747 100302224 NR_031747 miRBase:MI0010629 MIR2110 hsa-mir-2110 microRNA 2110 ncRNA 16-PTNLD14-TUMOR_peak_6050 chr13 62131803 62131852 + 9.06908 NA Intergenic AluY|SINE|Alu -142172 NM_022843 64881 Hs.391781 NM_022843 ENSG00000197991 PCDH20 PCDH13 protocadherin 20 protein-coding 16-PTNLD14-TUMOR_peak_13381 chr20 61456434 61456532 + 9.06908 NA intron (NM_001853, intron 12 of 31) CpG 8069 NM_001853 1299 Hs.716639 NM_001853 HPRD:00374 COL9A3 DJ885L7.4.1|EDM3|IDD|MED collagen, type IX, alpha 3 protein-coding 16-PTNLD14-TUMOR_peak_14820 chr3 103652826 103652878 + 9.06908 NA Intergenic L1PA5|LINE|L1 293253 NR_030330 693127 NR_030330 miRBase:MI0003612 MIR548A3 MIRN548A3 microRNA 548a-3 ncRNA 16-PTNLD14-TUMOR_peak_3417 chr10 127881617 127881667 + 9.06908 NA intron (NM_001288975, intron 3 of 18) AluSc8|SINE|Alu 195485 NM_001288975 8038 Hs.594351 NM_003474 HPRD:04092 ADAM12 ADAM12-OT1|CAR10|MCMP|MCMPMltna|MLTN|MLTNA ADAM metallopeptidase domain 12 protein-coding 16-PTNLD14-TUMOR_peak_20647 chr8 5146444 5146498 + 9.06908 NA Intergenic AluY|SINE|Alu -294143 NM_033225 64478 Hs.571466 NM_033225 HPRD:10523 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 16-PTNLD14-TUMOR_peak_7909 chr16 46591201 46591250 + 9.06908 NA intron (NR_026556, intron 4 of 16) AluYf4|SINE|Alu 11784 NR_026556 124149 Hs.97414 NM_001004299 ANKRD26P1 - ankyrin repeat domain 26 pseudogene 1 pseudo 16-PTNLD14-TUMOR_peak_16105 chr4 69438282 69438332 + 9.06908 NA Intergenic Intergenic -4062 NM_001077 7367 Hs.575083 NM_001077 HPRD:03545 UGT2B17 BMND12|UDPGT2B17 UDP glucuronosyltransferase 2 family, polypeptide B17 protein-coding 16-PTNLD14-TUMOR_peak_14342 chr3 25552700 25552751 + 9.06908 NA intron (NR_110892, intron 3 of 6) AluY|SINE|Alu 52924 NM_001290217 5915 Hs.654490 NM_000965 HPRD:07183 RARB HAP|MCOPS12|NR1B2|RRB2 retinoic acid receptor, beta protein-coding 16-PTNLD14-TUMOR_peak_12705 chr2 234857452 234857514 + 9.06908 NA intron (NM_024080, intron 8 of 25) AluSx1|SINE|Alu 31440 NM_024080 79054 Hs.366053 NM_024080 HPRD:09454 TRPM8 LTRPC6|TRPP8 transient receptor potential cation channel, subfamily M, member 8 protein-coding 16-PTNLD14-TUMOR_peak_12811 chr20 1139606 1139684 + 9.06908 NA intron (NM_178578, intron 5 of 7) AluSx|SINE|Alu 25472 NM_018354 55321 Hs.516834 NM_018354 HPRD:12772 TMEM74B C20orf46 transmembrane protein 74B protein-coding 16-PTNLD14-TUMOR_peak_18014 chr5 179694340 179694394 + 9.06908 NA intron (NM_002752, intron 3 of 11) AluY|SINE|Alu 24704 NM_139070 5601 Hs.484371 NM_002752 HPRD:04206 MAPK9 JNK-55|JNK2|JNK2A|JNK2ALPHA|JNK2B|JNK2BETA|PRKM9|SAPK|SAPK1a|p54a|p54aSAPK mitogen-activated protein kinase 9 protein-coding 16-PTNLD14-TUMOR_peak_14185 chr3 3715616 3715669 + 9.06908 NA Intergenic L1PA2|LINE|L1 -125479 NM_020873 57633 Hs.163244 NM_020873 HPRD:14320 LRRN1 FIGLER3|NLRR-1 leucine rich repeat neuronal 1 protein-coding 16-PTNLD14-TUMOR_peak_8075 chr16 68220333 68220434 + 9.06908 NA intron (NM_004555, intron 8 of 10) AluY|SINE|Alu 47019 NR_106831 102466194 NR_106831 MIR6773 hsa-mir-6773 microRNA 6773 ncRNA 16-PTNLD14-TUMOR_peak_6074 chr13 74858051 74858099 + 9.06908 NA Intergenic AluY|SINE|Alu -135235 NR_047005 100874151 Hs.564552 NR_047005 ENSG00000226240 LINC00381 - long intergenic non-protein coding RNA 381 ncRNA 16-PTNLD14-TUMOR_peak_21168 chr8 90169711 90169775 + 9.06908 NA Intergenic L1PA3|LINE|L1 -600232 NM_003821 8767 Hs.103755 NM_003821 HPRD:04585 RIPK2 CARD3|CARDIAK|CCK|GIG30|RICK|RIP2 receptor-interacting serine-threonine kinase 2 protein-coding 16-PTNLD14-TUMOR_peak_21044 chr8 64289740 64289818 + 9.06908 NA Intergenic AluY|SINE|Alu 208217 NM_001277818 253943 Hs.491861 NM_152758 HPRD:08106 YTHDF3 - YTH domain family, member 3 protein-coding 16-PTNLD14-TUMOR_peak_6107 chr13 91702303 91702353 + 9.06908 NA Intergenic L1PA4|LINE|L1 41365 NR_104057 101930747 Hs.112745 NR_104057 LINC00380 - long intergenic non-protein coding RNA 380 ncRNA 16-PTNLD14-TUMOR_peak_17325 chr5 86105621 86105669 + 9.06908 NA Intergenic AluSx1|SINE|Alu 63010 NR_105017 100505878 Hs.246405 NR_105017 ENSG00000250544 LOC100505878 - uncharacterized LOC100505878 ncRNA 16-PTNLD14-TUMOR_peak_18774 chr6 79067707 79067768 + 9.06908 NA Intergenic L1P1|LINE|L1 -509524 NM_001010844 134728 Hs.656212 NM_001010844 HPRD:17157 IRAK1BP1 AIP70|SIMPL interleukin-1 receptor-associated kinase 1 binding protein 1 protein-coding 16-PTNLD14-TUMOR_peak_14436 chr3 40074181 40074233 + 9.06908 NA intron (NM_001284423, intron 2 of 16) L1PA4|LINE|L1 -67295 NM_001284426 25924 Hs.594535 NM_015460 HPRD:14796 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 16-PTNLD14-TUMOR_peak_13839 chr22 19908365 19908460 + 9.06908 NA intron (NM_001282512, intron 2 of 11) AluY|SINE|Alu -20851 NM_000754 1312 Hs.370408 NM_000754 HPRD:00284 COMT HEL-S-98n catechol-O-methyltransferase protein-coding 16-PTNLD14-TUMOR_peak_15767 chr4 12030906 12030957 + 9.06908 NA Intergenic AluY|SINE|Alu -600394 NM_005114 9957 Hs.507348 NM_005114 HS3ST1 3OST|3OST1 heparan sulfate (glucosamine) 3-O-sulfotransferase 1 protein-coding 16-PTNLD14-TUMOR_peak_17561 chr5 130410145 130410194 + 9.06908 NA Intergenic L1P1|LINE|L1 90872 NR_073488 3094 Hs.483305 NM_005340 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 16-PTNLD14-TUMOR_peak_19011 chr6 138043072 138043120 + 9.06908 NA Intergenic HERV17-int|LTR|ERV1 17078 NR_121618 100507406 Hs.556703 NR_121618 ENSG00000234956 LOC100507406 - uncharacterized LOC100507406 ncRNA 16-PTNLD14-TUMOR_peak_8002 chr16 58306128 58306191 + 9.06908 NA intron (NM_001142302, intron 6 of 7) AluY|SINE|Alu 22319 NM_014157 29070 Hs.11614 NM_014157 HPRD:07121 CCDC113 - coiled-coil domain containing 113 protein-coding 16-PTNLD14-TUMOR_peak_20996 chr8 53040758 53040808 + 9.06908 NA intron (NM_014682, intron 22 of 25) AluSz|SINE|Alu -229037 NM_001286783 115294 Hs.671268 NM_052937 HPRD:08313 PCMTD1 - protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 protein-coding 16-PTNLD14-TUMOR_peak_21107 chr8 75923425 75923536 + 9.06908 NA intron (NM_001286777, intron 1 of 12) L1PA3|LINE|L1 11091 NM_001286778 83690 Hs.436542 NM_031461 HPRD:16756 CRISPLD1 CRISP-10|CRISP10|LCRISP1 cysteine-rich secretory protein LCCL domain containing 1 protein-coding 16-PTNLD14-TUMOR_peak_12732 chr2 237043993 237044044 + 9.06908 NA Intergenic AluY|SINE|Alu 32634 NM_001485 2637 Hs.184945 NM_001485 HPRD:03087 GBX2 - gastrulation brain homeobox 2 protein-coding 16-PTNLD14-TUMOR_peak_20175 chr7 123664473 123664524 + 9.06908 NA Intergenic L1PA4|LINE|L1 9025 NM_001136002 730130 Hs.450249 NM_001136002 ENSG00000234224 TMEM229A - transmembrane protein 229A protein-coding 16-PTNLD14-TUMOR_peak_11799 chr2 96359873 96359921 + 9.06908 NA Intergenic AluYa5|SINE|Alu 102131 NM_138800 129868 Hs.232026 NM_138800 HPRD:15560 TRIM43 TRIM43A tripartite motif containing 43 protein-coding 16-PTNLD14-TUMOR_peak_23237 chrX 57352874 57352933 + 9.06908 NA intron (NM_174912, intron 3 of 10) L1PA4|LINE|L1 39793 NM_174912 158584 Hs.496205 NM_174912 HPRD:06551 FAAH2 AMDD fatty acid amide hydrolase 2 protein-coding 16-PTNLD14-TUMOR_peak_21644 chr9 3577782 3577831 + 9.06908 NA Intergenic AluY|SINE|Alu -51805 NM_134428 5991 Hs.136829 NM_002919 HPRD:03215 RFX3 - regulatory factor X, 3 (influences HLA class II expression) protein-coding 16-PTNLD14-TUMOR_peak_14208 chr3 8045509 8045563 + 9.06908 NA intron (NR_110131, intron 1 of 3) AluY|SINE|Alu 12458 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 16-PTNLD14-TUMOR_peak_23813 chrY 4820559 4820606 + 9.06908 NA Intergenic L1HS|LINE|L1 -47685 NM_032971 83259 Hs.661308 NM_032971 HPRD:11847 PCDH11Y PCDH-PC|PCDH22|PCDHX|PCDHY protocadherin 11 Y-linked protein-coding 16-PTNLD14-TUMOR_peak_16973 chr5 42166502 42166551 + 9.06908 NA intron (NR_104636, intron 1 of 3) L1HS|LINE|L1 8921 NR_104635 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 16-PTNLD14-TUMOR_peak_17085 chr5 51345654 51345716 + 9.06908 NA Intergenic AluY|SINE|Alu -666519 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 16-PTNLD14-TUMOR_peak_12752 chr2 239865747 239865795 + 9.06908 NA Intergenic (CA)n|Simple_repeat|Simple_repeat -17806 NR_034162 401039 Hs.516791 NM_001001698 HPRD:16969 FLJ43879 - FLJ43879 protein ncRNA 16-PTNLD14-TUMOR_peak_11468 chr2 61835168 61835219 + 9.06908 NA Intergenic AluSz|SINE|Alu -69775 NM_003400 7514 Hs.370770 NM_003400 HPRD:03975 XPO1 CRM1|emb|exp1 exportin 1 protein-coding 16-PTNLD14-TUMOR_peak_23590 chrX 108574765 108574818 + 9.06908 NA Intergenic L1PA5|LINE|L1 150494 NM_001522 2986 Hs.123074 NM_001522 HPRD:02078 GUCY2F CYGF|GC-F|GUC2DL|GUC2F|RETGC-2|ROS-GC2 guanylate cyclase 2F, retinal protein-coding 16-PTNLD14-TUMOR_peak_19079 chr6 148794621 148794668 + 9.06908 NA intron (NM_015278, intron 6 of 19) AluSx1|SINE|Alu 130915 NM_015278 23328 Hs.193133 NM_015278 HPRD:06408 SASH1 SH3D6A|dJ323M4|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 16-PTNLD14-TUMOR_peak_18856 chr6 91889888 91889939 + 9.06908 NA Intergenic AluSx|SINE|Alu -341465 NR_039786 100616174 NR_039786 miRBase:MI0017270 MIR4643 - microRNA 4643 ncRNA 16-PTNLD14-TUMOR_peak_19622 chr7 61212732 61212781 + 9.06908 NA Intergenic ALR/Alpha|Satellite|centr 1551678 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 16-PTNLD14-TUMOR_peak_14180 chr3 3137708 3137843 + 9.06908 NA intron (NM_001243099, intron 7 of 10) AluY|SINE|Alu 14283 NM_175726 3568 Hs.68876 NM_000564 HPRD:00998 IL5RA CD125|CDw125|HSIL5R3|IL5R interleukin 5 receptor, alpha protein-coding 16-PTNLD14-TUMOR_peak_21622 chr8 146114252 146114300 + 9.06908 NA intron (NM_021061, intron 4 of 5) AluY|SINE|Alu 12570 NM_001109689 58500 Hs.532277 NM_021061 HPRD:15758 ZNF250 ZFP647|ZNF647 zinc finger protein 250 protein-coding 16-PTNLD14-TUMOR_peak_6118 chr13 95948120 95948173 + 9.06908 NA intron (NM_001105515, intron 1 of 20) AluSx3|SINE|Alu 5541 NM_001105515 10257 Hs.508423 NM_005845 HPRD:05583 ABCC4 EST170205|MOAT-B|MOATB|MRP4 ATP-binding cassette, sub-family C (CFTR/MRP), member 4 protein-coding 16-PTNLD14-TUMOR_peak_5101 chr12 27550046 27550094 + 9.06908 NA intron (NR_109975, intron 1 of 3) AluSc8|SINE|Alu 49497 NR_109975 101928646 Hs.434269 NR_109975 ENSG00000245311 ARNTL2-AS1 - ARNTL2 antisense RNA 1 ncRNA 16-PTNLD14-TUMOR_peak_4996 chr12 15335039 15335087 + 9.06908 NA intron (NM_032918, intron 2 of 4) AluSp|SINE|Alu 30206 NR_046559 100873980 Hs.569154 NR_046559 RERG-AS1 - RERG antisense RNA 1 ncRNA 16-PTNLD14-TUMOR_peak_17483 chr5 114928756 114928804 + 9.06908 NA intron (NM_001164469, intron 3 of 3) AluSz6|SINE|Alu -9072 NR_109875 101927100 Hs.745340 NR_109874 LOC101927100 - uncharacterized LOC101927100 ncRNA 16-PTNLD14-TUMOR_peak_23338 chrX 65686617 65686666 + 9.06908 NA Intergenic L1PA3|LINE|L1 149231 NM_001242310 60401 Hs.302017 NM_021783 HPRD:02230 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 16-PTNLD14-TUMOR_peak_15835 chr4 37748656 37748703 + 9.06908 NA Intergenic AluSq2|SINE|Alu -60680 NM_001085400 768211 Hs.283378 NM_001085399 ENSG00000181826 RELL1 - RELT-like 1 protein-coding 16-PTNLD14-TUMOR_peak_24048 chrY 23077105 23077152 + 9.06908 NA Intergenic L1PA2|LINE|L1 159174 NM_001039567 140032 Hs.367761 NM_001039567 HPRD:15960 RPS4Y2 RPS4Y2P ribosomal protein S4, Y-linked 2 protein-coding 16-PTNLD14-TUMOR_peak_9534 chr18 42660463 42660511 + 9.06908 NA Intergenic L1HS|LINE|L1 -110356 NR_036203 100422829 NR_036203 miRBase:MI0015848 MIR4319 - microRNA 4319 ncRNA 16-PTNLD14-TUMOR_peak_14360 chr3 25783383 25783442 + 9.06908 NA intron (NM_001145293, intron 4 of 11) AluSq2|SINE|Alu 41577 NM_018297 55768 Hs.368960 NM_018297 HPRD:10118 NGLY1 CDG1V|PNG1|PNGase N-glycanase 1 protein-coding 16-PTNLD14-TUMOR_peak_23167 chrX 46269859 46269907 + 9.06908 NA Intergenic L1PA4|LINE|L1 -36741 NM_001129899 55634 Hs.632800 NM_017776 HPRD:06530 KRBOX4 ZNF673 KRAB box domain containing 4 protein-coding 16-PTNLD14-TUMOR_peak_7577 chr16 19340943 19340991 + 9.06908 NA Intergenic (GA)n|Simple_repeat|Simple_repeat 43862 NM_001256720 728276 Hs.632180 NM_001256720 CLEC19A - C-type lectin domain family 19, member A protein-coding 16-PTNLD14-TUMOR_peak_302 chr1 25820305 25820357 + 9.06908 NA intron (NM_001282564, intron 8 of 8) AluY|SINE|Alu -49745 NM_015627 26119 Hs.590911 NM_015627 HPRD:05765 LDLRAP1 ARH|ARH1|ARH2|FHCB1|FHCB2 low density lipoprotein receptor adaptor protein 1 protein-coding 16-PTNLD14-TUMOR_peak_23077 chrX 19488315 19488369 + 9.06908 NA intron (NM_001001671, intron 3 of 28) L1PA4|LINE|L1 45037 NM_001001671 389840 Hs.713701 NM_001001671 HPRD:14359 MAP3K15 ASK3|bA723P2.3 mitogen-activated protein kinase kinase kinase 15 protein-coding 16-PTNLD14-TUMOR_peak_16027 chr4 56268976 56269023 + 9.06908 NA intron (NM_018475, intron 1 of 5) AluY|SINE|Alu 6919 NR_073070 55858 Hs.479766 NM_018475 HPRD:18216 TMEM165 CDG2K|FT27|GDT1|TMPT27|TPARL transmembrane protein 165 protein-coding 16-PTNLD14-TUMOR_peak_16964 chr5 40725902 40725954 + 9.06908 NA intron (NM_012382, intron 4 of 4) AluY|SINE|Alu 30144 NM_012382 23548 Hs.348915 NM_012382 HPRD:17807 TTC33 OSRF tetratricopeptide repeat domain 33 protein-coding 16-PTNLD14-TUMOR_peak_1017 chr1 97627777 97627826 + 9.06908 NA intron (NM_000110, intron 20 of 22) L1PA3|LINE|L1 66322 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 16-PTNLD14-TUMOR_peak_23361 chrX 69205880 69205927 + 9.06908 NA intron (NM_001005612, intron 2 of 7) L1PA2|LINE|L1 -36804 NR_037494 100500887 NR_037494 MIR676 hsa-mir-676 microRNA 676 ncRNA 16-PTNLD14-TUMOR_peak_6066 chr13 72071720 72071768 + 9.06908 NA intron (NM_004392, intron 2 of 6) AluSp|SINE|Alu 369586 NM_080759 1602 Hs.129452 NM_004392 HPRD:16031 DACH1 DACH dachshund family transcription factor 1 protein-coding 16-PTNLD14-TUMOR_peak_3872 chr11 36034899 36034947 + 9.06908 NA intron (NM_174902, intron 1 of 5) L1PA8|LINE|L1 3275 NR_039769 100616311 NR_039769 MIR3973 - microRNA 3973 ncRNA 16-PTNLD14-TUMOR_peak_23091 chrX 25427646 25427695 + 9.06908 NA Intergenic L1ME4a|LINE|L1 -393605 NM_139058 170302 Hs.300304 NM_139058 HPRD:02307 ARX CT121|EIEE1|ISSX|MRX29|MRX32|MRX33|MRX36|MRX38|MRX43|MRX54|MRX76|MRX87|MRXS1|PRTS aristaless related homeobox protein-coding 16-PTNLD14-TUMOR_peak_9781 chr19 3674570 3674621 + 9.06908 NA intron (NM_001300849, intron 1 of 16) AluSc|SINE|Alu 25882 NM_012398 23396 Hs.282177 NM_012398 HPRD:05834 PIP5K1C LCCS3|PIP5K-GAMMA|PIP5K1-gamma|PIP5Kgamma phosphatidylinositol-4-phosphate 5-kinase, type I, gamma protein-coding 16-PTNLD14-TUMOR_peak_14444 chr3 41847043 41847094 + 9.06908 NA intron (NM_017886, intron 19 of 36) L1PA3|LINE|L1 156592 NM_017886 54986 Hs.656192 NM_017886 HPRD:07928 ULK4 FAM7C1|REC01035 unc-51 like kinase 4 protein-coding 16-PTNLD14-TUMOR_peak_5957 chr13 33205123 33205171 + 9.06908 NA intron (NM_015032, intron 1 of 34) AluSz|SINE|Alu 44583 NM_015032 23047 Hs.744901 NM_015032 HPRD:05624 PDS5B APRIN|AS3|CG008 PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae) protein-coding 16-PTNLD14-TUMOR_peak_9532 chr18 42367716 42367772 + 9.06908 NA intron (NM_001130110, intron 2 of 3) AluYb9|SINE|Alu 106881 NM_015559 26040 Hs.435458 NM_015559 HPRD:10224 SETBP1 SEB SET binding protein 1 protein-coding 16-PTNLD14-TUMOR_peak_5589 chr12 98086229 98086283 + 9.06908 NA Intergenic L1PA5|LINE|L1 61120 NR_077241 643711 Hs.585557 NR_077240 ENSG00000257501 LOC643711 - platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa) pseudogene pseudo 16-PTNLD14-TUMOR_peak_19063 chr6 148723676 148723725 + 9.06908 NA intron (NM_015278, intron 2 of 19) AluSz|SINE|Alu 59971 NM_015278 23328 Hs.193133 NM_015278 HPRD:06408 SASH1 SH3D6A|dJ323M4|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 16-PTNLD14-TUMOR_peak_19231 chr7 451029 451189 + 9.05128 NA Intergenic Intergenic 31718 NR_033960 442497 Hs.704269 NR_033960 ENSG00000249574 LOC442497 - uncharacterized LOC442497 ncRNA 16-PTNLD14-TUMOR_peak_17868 chr5 167794386 167794435 + 9.05128 NA intron (NM_015238, intron 1 of 22) AluYc|SINE|Alu 75345 NM_001161662 23286 Hs.484047 NM_015238 HPRD:10033 WWC1 HBEBP3|HBEBP36|KIBRA|MEMRYQTL|PPP1R168 WW and C2 domain containing 1 protein-coding 16-PTNLD14-TUMOR_peak_5487 chr12 70093706 70093755 + 9.05128 NA promoter-TSS (NM_001282613) promoter-TSS (NM_001282613) -534 NM_001282615 144453 Hs.280782 NM_032735 HPRD:17484 BEST3 VMD2L3 bestrophin 3 protein-coding 16-PTNLD14-TUMOR_peak_11707 chr2 90385937 90385992 + 9.03264 NA Intergenic HSATII|Satellite|Satellite 1274080 NR_039635 100616399 NR_039635 miRBase:MI0016776 MIR4436A - microRNA 4436a ncRNA 16-PTNLD14-TUMOR_peak_1027 chr1 100047869 100047918 + 9.01441 NA Intergenic AluYc|SINE|Alu -63538 NM_017734 54873 Hs.483993 NM_017734 HPRD:06673 PALMD C1orf11|PALML palmdelphin protein-coding 16-PTNLD14-TUMOR_peak_21692 chr9 11475458 11475508 + 9.01441 NA Intergenic AluSx|SINE|Alu 862277 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 16-PTNLD14-TUMOR_peak_626 chr1 43714588 43714705 + 9.00904 NA intron (NM_001195831, intron 23 of 23) AluY|SINE|Alu -21019 NM_144626 128218 Hs.104476 NM_144626 HPRD:14457 TMEM125 - transmembrane protein 125 protein-coding 16-PTNLD14-TUMOR_peak_22546 chr9 132308209 132308267 + 9.00904 NA Intergenic AluSz|SINE|Alu 57299 NR_038955 100506190 Hs.529860 NR_038955 LINC00963 - long intergenic non-protein coding RNA 963 ncRNA 16-PTNLD14-TUMOR_peak_15543 chr3 196143948 196144053 + 9.00904 NA intron (NM_015562, intron 1 of 10) AluY|SINE|Alu 15345 NM_015562 26043 Hs.518524 NM_015562 UBXN7 UBXD7 UBX domain protein 7 protein-coding 16-PTNLD14-TUMOR_peak_4504 chr11 89048462 89048540 + 9.00904 NA Intergenic L1PA2|LINE|L1 137461 NM_000372 7299 Hs.503555 NM_000372 HPRD:06086 TYR ATN|CMM8|OCA1|OCA1A|OCAIA|SHEP3 tyrosinase protein-coding 16-PTNLD14-TUMOR_peak_5181 chr12 38111042 38111117 + 9.00627 NA Intergenic ALR/Alpha|Satellite|centr -599478 NM_001013620 144245 Hs.259305 NM_001013620 ALG10B ALG10|KCR1 ALG10B, alpha-1,2-glucosyltransferase protein-coding 16-PTNLD14-TUMOR_peak_11849 chr2 97442576 97442631 + 8.98846 NA intron (NM_020184, intron 1 of 6) AluSx3|SINE|Alu 15964 NM_020184 26504 Hs.175043 NM_020184 HPRD:07420 CNNM4 ACDP4 cyclin and CBS domain divalent metal cation transport mediator 4 protein-coding 16-PTNLD14-TUMOR_peak_14575 chr3 52508380 52508563 + 8.98846 NA intron (NM_001276293, intron 7 of 12) AluY|SINE|Alu 18947 NM_007184 11188 Hs.435290 NM_007184 HPRD:11391 NISCH I-1|IR1|IRAS|hIRAS nischarin protein-coding 16-PTNLD14-TUMOR_peak_20699 chr8 12476311 12476367 + 8.98846 NA intron (NR_047662, intron 2 of 8) AluY|SINE|Alu 46781 NR_047662 729732 Hs.322761 NR_047662 LOC729732 - uncharacterized LOC729732 ncRNA 16-PTNLD14-TUMOR_peak_17096 chr5 53494873 53494934 + 8.98846 NA intron (NM_019087, intron 1 of 4) L1PA3|LINE|L1 111500 NM_019087 54622 Hs.659125 NM_019087 HPRD:12471 ARL15 ARFRP2 ADP-ribosylation factor-like 15 protein-coding 16-PTNLD14-TUMOR_peak_19 chr1 569121 569176 + 8.98684 NA Intergenic Intergenic -1355 NR_106781 102465432 NR_106781 MIR6723 hsa-mir-6723 microRNA 6723 ncRNA 16-PTNLD14-TUMOR_peak_2966 chr10 51014935 51014984 + 8.96626 NA Intergenic AluSg|SINE|Alu -44534 NM_001143996 55753 Hs.17860 NM_018245 HPRD:07704 OGDHL - oxoglutarate dehydrogenase-like protein-coding 16-PTNLD14-TUMOR_peak_22548 chr9 132354961 132355019 + 8.96626 NA Intergenic AluSp|SINE|Alu -16173 NM_001286796 28989 Hs.744027 NM_014064 HPRD:10628 NTMT1 AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NTM1A N-terminal Xaa-Pro-Lys N-methyltransferase 1 protein-coding 16-PTNLD14-TUMOR_peak_12210 chr2 158403493 158403541 + 8.94886 NA intron (NM_001111033, intron 2 of 6) L1PA2|LINE|L1 50555 NM_001111031 130399 Hs.562901 NM_145259 HPRD:10608 ACVR1C ACVRLK7|ALK7 activin A receptor, type IC protein-coding 16-PTNLD14-TUMOR_peak_23713 chrX 147382979 147383028 + 8.94886 NA Intergenic L1PA4|LINE|L1 -199136 NM_001169124 2334 Hs.496911 NM_002025 HPRD:02397 AFF2 FMR2|FMR2P|FRAXE|MRX2|OX19 AF4/FMR2 family, member 2 protein-coding 16-PTNLD14-TUMOR_peak_14345 chr3 25712768 25712820 + 8.94886 NA Intergenic AluSx|SINE|Alu -6364 NR_039644 100616477 NR_039644 miRBase:MI0016785 MIR4442 - microRNA 4442 ncRNA 16-PTNLD14-TUMOR_peak_14178 chr3 3092173 3092248 + 8.94402 NA intron (NM_001206956, intron 14 of 15) AluSq2|SINE|Alu 10619 NR_046554 100873975 Hs.581502 NR_046554 CNTN4-AS1 - CNTN4 antisense RNA 1 ncRNA 16-PTNLD14-TUMOR_peak_8036 chr16 67222002 67222141 + 8.94402 NA intron (NM_178516, intron 4 of 13) AluSz|SINE|Alu 2036 NM_178516 283849 Hs.647356 NM_178516 HPRD:14148 EXOC3L1 EXOC3L exocyst complex component 3-like 1 protein-coding 16-PTNLD14-TUMOR_peak_4829 chr12 518113 518192 + 8.93714 NA intron (NM_001130147, intron 2 of 11) AluSx3|SINE|Alu 7411 NM_001130146 84318 Hs.631656 NM_032358 HPRD:17485 CCDC77 - coiled-coil domain containing 77 protein-coding 16-PTNLD14-TUMOR_peak_1060 chr1 103108804 103108980 + 8.93714 NA Intergenic L1PA3|LINE|L1 465160 NM_080630 1301 Hs.523446 NM_001854 HPRD:00375 COL11A1 CO11A1|COLL6|STL2 collagen, type XI, alpha 1 protein-coding 16-PTNLD14-TUMOR_peak_20189 chr7 127784820 127784868 + 8.92474 NA Intergenic AluJr|SINE|Alu 62931 NR_030324 693178 NR_030324 MIR593 MIRN593|hsa-mir-593 microRNA 593 ncRNA 16-PTNLD14-TUMOR_peak_16986 chr5 42265175 42265222 + 8.92474 NA Intergenic L1PA7|LINE|L1 -89751 NR_104636 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 16-PTNLD14-TUMOR_peak_11750 chr2 92295559 92295606 + 8.91616 NA Intergenic ALR/Alpha|Satellite|centr 166423 NR_027714 440888 Hs.730239 NM_001032412 ENSG00000226481 ACTR3BP2 FKSG73 ACTR3B pseudogene 2 pseudo 16-PTNLD14-TUMOR_peak_1233 chr1 121430490 121430549 + 8.88970 NA Intergenic ALR/Alpha|Satellite|centr 169609 NR_003955 647121 Hs.697682 NR_003955 EMBP1 - embigin pseudogene 1 pseudo 16-PTNLD14-TUMOR_peak_17076 chr5 49533894 49533942 + 8.88970 NA Intergenic ALR/Alpha|Satellite|centr 203316 NM_198449 133418 Hs.561411 NM_198449 HPRD:13271 EMB GP70 embigin protein-coding 16-PTNLD14-TUMOR_peak_5194 chr12 38347567 38347617 + 8.88491 NA Intergenic ALR/Alpha|Satellite|centr -362965 NM_001013620 144245 Hs.259305 NM_001013620 ALG10B ALG10|KCR1 ALG10B, alpha-1,2-glucosyltransferase protein-coding 16-PTNLD14-TUMOR_peak_5543 chr12 87792284 87792335 + 8.88491 NA Intergenic L1PA5|LINE|L1 386179 NR_033410 400058 Hs.572212 NR_033410 MKRN9P MKRN5|MKRN9|MKRNP6|RNF65|ZNF127L3 makorin ring finger protein 9, pseudogene pseudo 16-PTNLD14-TUMOR_peak_19074 chr6 148756407 148756456 + 8.88326 NA intron (NM_015278, intron 2 of 19) AluSg4|SINE|Alu 92702 NM_015278 23328 Hs.193133 NM_015278 HPRD:06408 SASH1 SH3D6A|dJ323M4|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 16-PTNLD14-TUMOR_peak_17750 chr5 147338858 147339003 + 8.83540 NA Intergenic L1HS|LINE|L1 -52829 NM_206966 389336 Hs.660038 NM_206966 HPRD:14491 C5orf46 SSSP1 chromosome 5 open reading frame 46 protein-coding 16-PTNLD14-TUMOR_peak_6095 chr13 85703028 85703086 + 8.83540 NA Intergenic L1PA2|LINE|L1 -234681 NR_046989 100874137 Hs.742643 NR_046989 ENSG00000226317 LINC00351 - long intergenic non-protein coding RNA 351 ncRNA 16-PTNLD14-TUMOR_peak_6088 chr13 82037179 82037236 + 8.82162 NA Intergenic L1PA4|LINE|L1 444681 NR_125770 103724386 Hs.539622 NR_125770 LINC00377 TCONS_00021861 long intergenic non-protein coding RNA 377 ncRNA 16-PTNLD14-TUMOR_peak_16873 chr5 19507589 19507645 + 8.82162 NA intron (NM_001291956, intron 12 of 14) L1PA4|LINE|L1 378764 NM_001291957 1016 Hs.317632 NM_004934 HPRD:04314 CDH18 CDH14|CDH14L|CDH24 cadherin 18, type 2 protein-coding 16-PTNLD14-TUMOR_peak_23706 chrX 144191885 144191935 + 8.82162 NA Intergenic AluSp|SINE|Alu -137197 NM_001009614 494118 Hs.551270 NM_001009614 SPANXN1 CT11.6 SPANX family, member N1 protein-coding 16-PTNLD14-TUMOR_peak_19695 chr7 62103921 62103972 + 8.82162 NA Intergenic ALR/Alpha|Satellite|centr 660488 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 16-PTNLD14-TUMOR_peak_16782 chr5 5746797 5746886 + 8.82162 NA Intergenic AluYa5|SINE|Alu 324055 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongator complex ELL subunit 1 protein-coding 16-PTNLD14-TUMOR_peak_12543 chr2 206895873 206895922 + 8.82162 NA intron (NM_017759, intron 5 of 10) AluSx3|SINE|Alu 55009 NM_017759 54891 Hs.445036 NM_017759 HPRD:07894 INO80D - INO80 complex subunit D protein-coding 16-PTNLD14-TUMOR_peak_1059 chr1 103108440 103108619 + 8.79768 NA Intergenic L1PA3|LINE|L1 465523 NM_080630 1301 Hs.523446 NM_001854 HPRD:00375 COL11A1 CO11A1|COLL6|STL2 collagen, type XI, alpha 1 protein-coding 16-PTNLD14-TUMOR_peak_10085 chr19 14984992 14985044 + 8.79734 NA Intergenic AluY|SINE|Alu 7149 NM_030901 26333 Hs.247717 NM_030901 HPRD:17781 OR7A17 BC85395_4|HTPCRX19 olfactory receptor, family 7, subfamily A, member 17 protein-coding 16-PTNLD14-TUMOR_peak_11077 chr2 207232 207386 + 8.75966 NA Intergenic (GGGA)n|Simple_repeat|Simple_repeat 49031 NM_001282687 26751 Hs.515951 NM_015677 HPRD:15336 SH3YL1 RAY SH3 and SYLF domain containing 1 protein-coding 16-PTNLD14-TUMOR_peak_15387 chr3 182044134 182044192 + 8.75966 NA Intergenic AluY|SINE|Alu 159987 NR_040105 401103 Hs.591304 NR_040105 ENSG00000241098 FLJ46066 - uncharacterized LOC401103 ncRNA 16-PTNLD14-TUMOR_peak_12246 chr2 164514858 164514906 + 8.75966 NA intron (NM_018086, intron 2 of 2) (TC)n|Simple_repeat|Simple_repeat 77631 NM_018086 55137 Hs.593650 NM_018086 FIGN - fidgetin protein-coding 16-PTNLD14-TUMOR_peak_276 chr1 23709536 23709594 + 8.75966 NA intron (NM_003196, intron 10 of 10) AluY|SINE|Alu -13208 NM_001077195 80818 Hs.293798 NM_030634 HPRD:15793 ZNF436 ZNF|Zfp46 zinc finger protein 436 protein-coding 16-PTNLD14-TUMOR_peak_17386 chr5 98082460 98082509 + 8.73707 NA Intergenic L1PA10|LINE|L1 -22515 NM_001012761 285704 Hs.526902 NM_173670 HPRD:15243 RGMB DRAGON repulsive guidance molecule family member b protein-coding 16-PTNLD14-TUMOR_peak_20967 chr8 46877295 46877344 + 8.73707 NA Intergenic ALR/Alpha|Satellite|centr -875189 NR_027012 497634 Hs.406982 NR_027012 ENSG00000253314 LINC00293 BEYLA|NCRNA00293 long intergenic non-protein coding RNA 293 ncRNA 16-PTNLD14-TUMOR_peak_11846 chr2 97420936 97420991 + 8.73707 NA Intergenic AluY|SINE|Alu -5676 NM_020184 26504 Hs.175043 NM_020184 HPRD:07420 CNNM4 ACDP4 cyclin and CBS domain divalent metal cation transport mediator 4 protein-coding 16-PTNLD14-TUMOR_peak_14442 chr3 40949125 40949178 + 8.69890 NA Intergenic L1PA3|LINE|L1 -291791 NM_001904 1499 Hs.476018 NM_001904 HPRD:00286 CTNNB1 CTNNB|MRD19|armadillo catenin (cadherin-associated protein), beta 1, 88kDa protein-coding 16-PTNLD14-TUMOR_peak_12169 chr2 151866620 151866668 + 8.69890 NA Intergenic AluSx1|SINE|Alu 251745 NM_198557 375287 Hs.302442 NM_198557 HPRD:10992 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 16-PTNLD14-TUMOR_peak_19619 chr7 61148826 61148875 + 8.69890 NA Intergenic ALR/Alpha|Satellite|centr 1615584 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 16-PTNLD14-TUMOR_peak_15550 chr3 196319631 196319708 + 8.69890 NA Intergenic AluSp|SINE|Alu 23944 NM_001105573 200933 Hs.169815 NM_001105573 ENSG00000174013 FBXO45 Fbx45 F-box protein 45 protein-coding 16-PTNLD14-TUMOR_peak_15282 chr3 164351465 164351514 + 8.69890 NA Intergenic L1PA2|LINE|L1 444794 NM_001041 6476 Hs.429596 NM_001041 HPRD:01962 SI - sucrase-isomaltase (alpha-glucosidase) protein-coding 16-PTNLD14-TUMOR_peak_18181 chr6 14388464 14388512 + 8.69890 NA Intergenic AluYf4|SINE|Alu -102803 NR_108096 102216342 Hs.563409 NR_108096 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 16-PTNLD14-TUMOR_peak_9191 chr17 76751403 76751453 + 8.68859 NA intron (NM_004762, intron 1 of 12) AluSz|SINE|Alu 26996 NM_017456 9267 Hs.191215 NM_004762 HPRD:01630 CYTH1 B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7 cytohesin 1 protein-coding 16-PTNLD14-TUMOR_peak_5320 chr12 53798686 53798738 + 8.68859 NA intron (NM_001251825, intron 3 of 5) AluSz|SINE|Alu -18927 NM_020547 269 Hs.659889 NM_020547 HPRD:02978 AMHR2 AMHR|MISR2|MISRII|MRII anti-Mullerian hormone receptor, type II protein-coding 16-PTNLD14-TUMOR_peak_16293 chr4 112316150 112316204 + 8.68859 NA Intergenic L1PA3|LINE|L1 -750376 NM_152400 132720 Hs.23439 NM_152400 C4orf32 - chromosome 4 open reading frame 32 protein-coding 16-PTNLD14-TUMOR_peak_22472 chr9 127195337 127195420 + 8.68119 NA Intergenic AluSz6|SINE|Alu -17626 NM_002799 5695 Hs.213470 NM_002799 HPRD:04940 PSMB7 Z proteasome (prosome, macropain) subunit, beta type, 7 protein-coding 16-PTNLD14-TUMOR_peak_5178 chr12 38038099 38038146 + 8.66740 NA Intergenic ALR/Alpha|Satellite|centr -672435 NM_001013620 144245 Hs.259305 NM_001013620 ALG10B ALG10|KCR1 ALG10B, alpha-1,2-glucosyltransferase protein-coding 16-PTNLD14-TUMOR_peak_811 chr1 62214859 62214908 + 8.64021 NA intron (NM_176877, intron 1 of 42) AluSx3|SINE|Alu 6734 NM_176877 10207 Hs.478125 NM_005799 HPRD:04434 INADL Cipp|InaD-like|PATJ|hINADL InaD-like (Drosophila) protein-coding 16-PTNLD14-TUMOR_peak_21976 chr9 66792732 66792781 + 8.63857 NA Intergenic ALR/Alpha|Satellite|centr -130211 NR_121570 101928381 Hs.708686 NR_121570 LOC101928381 - uncharacterized LOC101928381 ncRNA 16-PTNLD14-TUMOR_peak_23564 chrX 103524502 103524550 + 8.63857 NA Intergenic AluSx1|SINE|Alu -24927 NM_153448 80712 Hs.223782 NM_153448 HPRD:06503 ESX1 ESX1L|ESXR1 ESX homeobox 1 protein-coding 16-PTNLD14-TUMOR_peak_1220 chr1 121356084 121356131 + 8.61685 NA Intergenic ALR/Alpha|Satellite|centr 95197 NR_003955 647121 Hs.697682 NR_003955 EMBP1 - embigin pseudogene 1 pseudo 16-PTNLD14-TUMOR_peak_22749 chr9_gl000199_random 169223 169270 + 8.59620 NA NA ALR/Alpha|Satellite|centr NA NA 16-PTNLD14-TUMOR_peak_3464 chr10 131917001 131917065 + 8.59302 NA Intergenic AluSx|SINE|Alu -7952 NR_034125 387723 Hs.127394 NR_034125 LINC00959 - long intergenic non-protein coding RNA 959 ncRNA 16-PTNLD14-TUMOR_peak_14807 chr3 100291203 100291330 + 8.57840 NA intron (NM_018004, intron 5 of 5) L1PA4|LINE|L1 -37167 NM_032787 84873 Hs.334511 NM_032787 HPRD:17060 GPR128 - G protein-coupled receptor 128 protein-coding 16-PTNLD14-TUMOR_peak_9469 chr18 20655691 20655740 + 8.57840 NA Intergenic AluSp|SINE|Alu -58813 NM_001256438 91768 Hs.11108 NM_138375 HPRD:16461 CABLES1 CABL1|CABLES|HsT2563|IK3-1 Cdk5 and Abl enzyme substrate 1 protein-coding 16-PTNLD14-TUMOR_peak_16594 chr4 167494533 167494586 + 8.57840 NA Intergenic L1HS|LINE|L1 661018 NM_001204353 50859 Hs.481133 NM_016950 HPRD:12147 SPOCK3 HSAJ1454|TES-3|TICN3 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3 protein-coding 16-PTNLD14-TUMOR_peak_19202 chr6 170044878 170045004 + 8.57840 NA intron (NM_182552, intron 16 of 25) AluYa5|SINE|Alu 57218 NM_182552 253769 Hs.131903 NM_182552 HPRD:11352 WDR27 - WD repeat domain 27 protein-coding 16-PTNLD14-TUMOR_peak_23126 chrX 32426013 32426063 + 8.52470 NA intron (NM_004009, intron 30 of 78) L1PA4|LINE|L1 4333 NM_004012 1756 Hs.495912 NM_000109 HPRD:02303 DMD BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272|MRX85 dystrophin protein-coding 16-PTNLD14-TUMOR_peak_1036 chr1 101132134 101132183 + 8.52102 NA Intergenic L1PA4|LINE|L1 -19598 NR_038914 100128787 Hs.536050 NR_038914 LINC01349 - long intergenic non-protein coding RNA 1349 ncRNA 16-PTNLD14-TUMOR_peak_22045 chr9 69993620 69993667 + 8.50512 NA Intergenic ALR/Alpha|Satellite|centr 185172 NM_001126334 653427 Hs.714683 NM_001126334 ENSG00000204779 FOXD4L5 bA15J10.2 forkhead box D4-like 5 protein-coding 16-PTNLD14-TUMOR_peak_17068 chr5 49441264 49441314 + 8.48280 NA Intergenic ALR/Alpha|Satellite|centr 295945 NM_198449 133418 Hs.561411 NM_198449 HPRD:13271 EMB GP70 embigin protein-coding 16-PTNLD14-TUMOR_peak_13853 chr22 19944656 19944706 + 8.48131 NA intron (NM_001135162, intron 1 of 5) AluY|SINE|Alu -5389 NM_007310 1312 Hs.370408 NM_000754 HPRD:00284 COMT HEL-S-98n catechol-O-methyltransferase protein-coding 16-PTNLD14-TUMOR_peak_11650 chr2 87634125 87634206 + 8.47141 NA Intergenic (CAGC)n|Simple_repeat|Simple_repeat -120809 NR_024204 112597 Hs.652166 NM_052871 HPRD:14654 LINC00152 C2orf59|NCRNA00152 long intergenic non-protein coding RNA 152 ncRNA 16-PTNLD14-TUMOR_peak_20806 chr8 31773817 31773871 + 8.46341 NA intron (NM_013962, intron 1 of 4) L1PA3|LINE|L1 -109408 NR_104158 100856811 Hs.97362 NR_104156 NRG1-IT1 - NRG1 intronic transcript 1 (non-protein coding) ncRNA 16-PTNLD14-TUMOR_peak_2793 chr10 42372869 42372922 + 8.45495 NA Intergenic (CATTC)n|Satellite|Satellite 490598 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 16-PTNLD14-TUMOR_peak_18771 chr6 78476362 78476420 + 8.45495 NA intron (NM_001282136, intron 2 of 3) AluY|SINE|Alu 76018 NM_001282136 101928601 NM_001282136 MEI4 - meiosis-specific 4 homolog (S. cerevisiae) protein-coding 16-PTNLD14-TUMOR_peak_8614 chr17 22262654 22262701 + 8.44337 NA Intergenic ALR/Alpha|Satellite|centr 240240 NM_001190452 100462977 Hs.740185 NM_001190452 ENSG00000256618 MTRNR2L1 HN1 MT-RNR2-like 1 protein-coding 16-PTNLD14-TUMOR_peak_18198 chr6 16013106 16013153 + 8.43269 NA Intergenic L1PA3|LINE|L1 -116188 NM_013262 29116 Hs.484738 NM_013262 HPRD:17621 MYLIP IDOL|MIR myosin regulatory light chain interacting protein protein-coding 16-PTNLD14-TUMOR_peak_8620 chr17 25265630 25265682 + 8.41752 NA Intergenic (GAATG)n|Satellite|Satellite 355366 NR_039748 100616277 NR_039748 miRBase:MI0016889 MIR4522 - microRNA 4522 ncRNA 16-PTNLD14-TUMOR_peak_456 chr1 36463489 36463558 + 8.40908 NA intron (NM_024852, intron 5 of 18) AluSx1|SINE|Alu 66840 NM_177422 192669 Hs.657659 NM_024852 HPRD:09558 AGO3 EIF2C3 argonaute RISC catalytic component 3 protein-coding 16-PTNLD14-TUMOR_peak_1045 chr1 102976750 102976898 + 8.40853 NA Intergenic L1M2|LINE|L1 -514034 NR_110211 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 16-PTNLD14-TUMOR_peak_23531 chrX 95443733 95443788 + 8.40689 NA Intergenic L1PA3|LINE|L1 149141 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 LOC643486 - bromodomain, testis-specific pseudogene pseudo 16-PTNLD14-TUMOR_peak_20110 chr7 104224844 104224892 + 8.40689 NA intron (NM_199000, intron 1 of 2) L1PA4|LINE|L1 219671 NR_034141 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 16-PTNLD14-TUMOR_peak_277 chr1 23793542 23793590 + 8.40689 NA intron (NM_017707, intron 1 of 24) AluSx|SINE|Alu 17184 NM_017707 55616 Hs.437379 NM_017707 HPRD:11662 ASAP3 ACAP4|CENTB6|DDEFL1|UPLC1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 3 protein-coding 16-PTNLD14-TUMOR_peak_23715 chrX 147430133 147430182 + 8.40689 NA Intergenic L1PA5|LINE|L1 -151982 NM_001169124 2334 Hs.496911 NM_002025 HPRD:02397 AFF2 FMR2|FMR2P|FRAXE|MRX2|OX19 AF4/FMR2 family, member 2 protein-coding 16-PTNLD14-TUMOR_peak_681 chr1 46347554 46347603 + 8.40689 NA intron (NM_015112, intron 3 of 28) AluY|SINE|Alu 78293 NM_015112 23139 Hs.319481 NM_015112 HPRD:11294 MAST2 MAST205|MTSSK microtubule associated serine/threonine kinase 2 protein-coding 16-PTNLD14-TUMOR_peak_19503 chr7 44368205 44368258 + 8.40689 NA Intergenic (ATGGTG)n|Simple_repeat|Simple_repeat -3001 NM_172078 816 Hs.351887 NM_001220 HPRD:12127 CAMK2B CAM2|CAMK2|CAMKB calcium/calmodulin-dependent protein kinase II beta protein-coding 16-PTNLD14-TUMOR_peak_10288 chr19 24628783 24628852 + 8.40597 NA Intergenic ALR/Alpha|Satellite|centr -282568 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 16-PTNLD14-TUMOR_peak_15892 chr4 49116762 49116859 + 8.38292 NA Intergenic (CATTC)n|Satellite|Satellite 128151 NM_001286791 80157 Hs.479703 NM_025087 HPRD:08638 CWH43 CWH43-C cell wall biogenesis 43 C-terminal homolog (S. cerevisiae) protein-coding 16-PTNLD14-TUMOR_peak_20332 chr7 140638442 140638495 + 8.37371 NA Intergenic AluSz|SINE|Alu -13904 NM_004333 673 Hs.550061 NM_004333 HPRD:01264 BRAF B-RAF1|BRAF1|NS7|RAFB1 B-Raf proto-oncogene, serine/threonine kinase protein-coding 16-PTNLD14-TUMOR_peak_23691 chrX 136082093 136082406 + 8.36360 NA Intergenic SVA_D|Other|Other 31584 NM_054021 83550 Hs.350569 NM_054021 HPRD:02315 GPR101 GPCR6 G protein-coupled receptor 101 protein-coding 16-PTNLD14-TUMOR_peak_15483 chr3 193173020 193173070 + 8.35025 NA intron (NM_032279, intron 16 of 29) AluY|SINE|Alu -76531 NM_198505 344905 Hs.658032 NM_198505 HPRD:18597 ATP13A5 - ATPase type 13A5 protein-coding 16-PTNLD14-TUMOR_peak_17001 chr5 42381033 42381084 + 8.35025 NA Intergenic AluSx3|SINE|Alu -42819 NM_000163 2690 Hs.125180 NM_000163 HPRD:02971 GHR GHBP growth hormone receptor protein-coding 16-PTNLD14-TUMOR_peak_8349 chr17 1075086 1075146 + 8.35025 NA intron (NM_001159746, intron 1 of 22) AluSq|SINE|Alu 8152 NM_021962 29 Hs.159306 NM_001092 HPRD:02649 ABR MDB active BCR-related protein-coding 16-PTNLD14-TUMOR_peak_21340 chr8 120653056 120653110 + 8.35025 NA Intergenic AluSq|SINE|Alu -1977 NM_006209 5168 Hs.190977 NM_006209 HPRD:03037 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 16-PTNLD14-TUMOR_peak_23464 chrX 79158822 79158874 + 8.35025 NA Intergenic L1PA3|LINE|L1 -111407 NM_001109878 50945 Hs.374253 NM_016954 HPRD:02253 TBX22 ABERS|CLPA|CPX|TBXX|dJ795G23.1 T-box 22 protein-coding 16-PTNLD14-TUMOR_peak_19076 chr6 148767435 148767484 + 8.35025 NA intron (NM_015278, intron 4 of 19) AluY|SINE|Alu 103730 NM_015278 23328 Hs.193133 NM_015278 HPRD:06408 SASH1 SH3D6A|dJ323M4|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 16-PTNLD14-TUMOR_peak_11712 chr2 90476178 90476229 + 8.34936 NA Intergenic (GCTG)n|Simple_repeat|Simple_repeat 1364319 NR_039635 100616399 NR_039635 miRBase:MI0016776 MIR4436A - microRNA 4436a ncRNA 16-PTNLD14-TUMOR_peak_17808 chr5 153103320 153103432 + 8.34714 NA intron (NM_001114183, intron 11 of 15) L1PA3|LINE|L1 231644 NM_001258022 2890 Hs.519693 NM_000827 HPRD:00695 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate receptor, ionotropic, AMPA 1 protein-coding 16-PTNLD14-TUMOR_peak_11720 chr2 91607425 91607480 + 8.34420 NA Intergenic HSATII|Satellite|Satellite 240523 NR_027238 654342 Hs.469287 NR_027238 ENSG00000143429 LOC654342 - lymphocyte-specific protein 1 pseudogene pseudo 16-PTNLD14-TUMOR_peak_20775 chr8 27778357 27778406 + 8.31964 NA intron (NM_173833, intron 4 of 8) AluYa5|SINE|Alu -34748 NR_036249 100422828 NR_036249 MIR4287 - microRNA 4287 ncRNA 16-PTNLD14-TUMOR_peak_24033 chrY 16129126 16129175 + 8.31964 NA Intergenic L1PA2|LINE|L1 -30758 NM_004679 9084 Hs.632284 NM_004679 HPRD:02453 VCY BPY1|VCY1|VCY1A variable charge, Y-linked protein-coding 16-PTNLD14-TUMOR_peak_18820 chr6 87376634 87376684 + 8.31964 NA Intergenic L1PA2|LINE|L1 -270365 NM_000865 3354 Hs.1611 NM_000865 HPRD:01635 HTR1E 5-HT1E 5-hydroxytryptamine (serotonin) receptor 1E, G protein-coupled protein-coding 16-PTNLD14-TUMOR_peak_23205 chrX 53241675 53241724 + 8.29567 NA intron (NM_001282622, intron 8 of 25) AluSg|SINE|Alu 12905 NM_001282622 8242 Hs.631768 NM_004187 HPRD:02442 KDM5C DXS1272E|JARID1C|MRX13|MRXJ|MRXSCJ|MRXSJ|SMCX|XE169 lysine (K)-specific demethylase 5C protein-coding 16-PTNLD14-TUMOR_peak_2073 chr1 208910263 208910315 + 8.29567 NA Intergenic AluY|SINE|Alu -492624 NM_025179 5362 Hs.497626 NM_025179 HPRD:03033 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 16-PTNLD14-TUMOR_peak_23176 chrX 47974363 47974592 + 8.29567 NA intron (NR_028366, intron 5 of 7) SVA_D|Other|Other 7110 NR_028366 280657 Hs.511998 NM_173357 HPRD:18109 SSX6 SSXP2|dJ54B20.1|psiSSX2 synovial sarcoma, X breakpoint 6 (pseudogene) pseudo 16-PTNLD14-TUMOR_peak_19408 chr7 25103928 25103979 + 8.29567 NA Intergenic AluY|SINE|Alu 61027 NM_018947 54205 Hs.437060 NM_018947 CYCS CYC|HCS|THC4 cytochrome c, somatic protein-coding 16-PTNLD14-TUMOR_peak_5707 chr12 112511319 112511369 + 8.29567 NA intron (NM_024953, intron 9 of 23) AluY|SINE|Alu 35291 NM_024953 80018 Hs.530941 NM_024953 HPRD:08578 NAA25 C12orf30|MDM20|NAP1 N(alpha)-acetyltransferase 25, NatB auxiliary subunit protein-coding 16-PTNLD14-TUMOR_peak_6002 chr13 45609284 45609333 + 8.29567 NA Intergenic AluY|SINE|Alu 45621 NM_018559 55425 Hs.731811 NM_018559 HPRD:17225 GPALPP1 KIAA1704|LSR7|bA245H20.2 GPALPP motifs containing 1 protein-coding 16-PTNLD14-TUMOR_peak_14564 chr3 52374670 52374726 + 8.29567 NA intron (NM_015512, intron 8 of 77) AluSx1|SINE|Alu 24363 NM_015512 25981 Hs.655469 NM_015512 HPRD:11790 DNAH1 DNAHC1|HDHC7|HL-11|HL11|HSRF-1|XLHSRF-1 dynein, axonemal, heavy chain 1 protein-coding 16-PTNLD14-TUMOR_peak_12036 chr2 128983366 128983461 + 8.24160 NA Intergenic MSTB|LTR|ERVL-MaLR 92758 NM_004807 9394 Hs.512841 NM_004807 HPRD:07274 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 16-PTNLD14-TUMOR_peak_16417 chr4 135756184 135756231 + 8.24160 NA Intergenic L1PA5|LINE|L1 -633304 NM_001114734 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein, cytoplasmic 4-like protein-coding 16-PTNLD14-TUMOR_peak_3030 chr10 63202984 63203034 + 8.24160 NA intron (NM_178505, intron 1 of 5) AluY|SINE|Alu -9388 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 16-PTNLD14-TUMOR_peak_19724 chr7 64569578 64569647 + 8.24160 NA Intergenic MER54A|LTR|ERVL 70880 NR_033416 643180 Hs.510847 NR_033416 ENSG00000234585 CCT6P3 CCT6-3P chaperonin containing TCP1, subunit 6 (zeta) pseudogene 3 pseudo 16-PTNLD14-TUMOR_peak_11677 chr2 89849718 89849795 + 8.23522 NA Intergenic HSATII|Satellite|Satellite 737872 NR_039635 100616399 NR_039635 miRBase:MI0016776 MIR4436A - microRNA 4436a ncRNA 16-PTNLD14-TUMOR_peak_20057 chr7 100528518 100528566 + 8.23322 NA Intergenic AluSx|SINE|Alu -18510 NM_005960 4584 Hs.744422 NM_005960 MUC3A MUC-3A|MUC3 mucin 3A, cell surface associated protein-coding 16-PTNLD14-TUMOR_peak_15367 chr3 179219134 179219181 + 8.23322 NA Intergenic AluSz6|SINE|Alu -49786 NM_021629 59345 Hs.173030 NM_021629 GNB4 CMTD1F guanine nucleotide binding protein (G protein), beta polypeptide 4 protein-coding 16-PTNLD14-TUMOR_peak_17691 chr5 140608958 140609007 + 8.22543 NA Intergenic L1PA2|LINE|L1 -4956 NR_001281 54660 Hs.676071 NR_001281 ENSG00000146001 PCDHB18 PCDH-psi2 protocadherin beta 18 pseudogene pseudo 16-PTNLD14-TUMOR_peak_23516 chrX 89621416 89621468 + 8.19343 NA Intergenic AluSz|SINE|Alu 444502 NM_138960 90316 Hs.592220 NM_138960 HPRD:02328 TGIF2LX TGIFLX TGFB-induced factor homeobox 2-like, X-linked protein-coding 16-PTNLD14-TUMOR_peak_12043 chr2 129621825 129621873 + 8.18870 NA promoter-TSS (NR_110278) promoter-TSS (NR_110278) -325 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 16-PTNLD14-TUMOR_peak_3591 chr11 3646473 3646529 + 8.18870 NA Intergenic AluSx|SINE|Alu -1189 NR_002720 7221 Hs.131910 NR_002720 ENSG00000182048 TRPC2 - transient receptor potential cation channel, subfamily C, member 2, pseudogene pseudo 16-PTNLD14-TUMOR_peak_16002 chr4 52669818 52669881 + 8.18069 NA Intergenic ALR/Alpha|Satellite|centr -39317 NM_015115 23142 Hs.605388 NM_015115 HPRD:13791 DCUN1D4 - DCN1, defective in cullin neddylation 1, domain containing 4 protein-coding 16-PTNLD14-TUMOR_peak_16463 chr4 144513809 144513856 + 8.14674 NA intron (NM_001168235, intron 6 of 7) L1PA4|LINE|L1 33207 NR_003675 441046 Hs.135705 NM_001011539 HPRD:17402 GUSBP5 GYPELOC441046 glucuronidase, beta pseudogene 5 pseudo 16-PTNLD14-TUMOR_peak_23982 chrY 13804168 13804219 + 8.14358 NA Intergenic Intergenic 729196 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 16-PTNLD14-TUMOR_peak_2599 chr10 25760234 25760285 + 8.13465 NA intron (NM_020752, intron 5 of 10) L1PA5|LINE|L1 -180382 NR_108068 101929052 Hs.128298 NR_108067 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 16-PTNLD14-TUMOR_peak_12688 chr2 234736018 234736074 + 8.13465 NA intron (NM_001287395, intron 35 of 41) L1PA10|LINE|L1 27166 NM_018410 55355 Hs.532968 NM_018410 ENSG00000123485 HJURP FAKTS|URLC9|hFLEG1 Holliday junction recognition protein protein-coding 16-PTNLD14-TUMOR_peak_19354 chr7 16829480 16829623 + 8.13465 NA Intergenic SVA_D|Other|Other 15187 NM_006408 10551 Hs.530009 NM_006408 HPRD:05896 AGR2 AG2|GOB-4|HAG-2|HEL-S-116|PDIA17|XAG-2 anterior gradient 2 protein-coding 16-PTNLD14-TUMOR_peak_12779 chr2 242632572 242632625 + 8.13465 NA Intergenic AluSg|SINE|Alu -6215 NR_033255 1841 Hs.471873 NM_012145 HPRD:01773 DTYMK CDC8|PP3731|TMPK|TYMK deoxythymidylate kinase (thymidylate kinase) protein-coding 16-PTNLD14-TUMOR_peak_12885 chr20 17508157 17508212 + 8.12288 NA intron (NM_001278608, intron 3 of 9) AluY|SINE|Alu 3830 NM_001195 631 Hs.129702 NM_001195 HPRD:04494 BFSP1 CP115|CP94|CTRCT33|LIFL-H beaded filament structural protein 1, filensin protein-coding 16-PTNLD14-TUMOR_peak_23257 chrX 61684410 61684459 + 8.10826 NA Intergenic ALR/Alpha|Satellite|centr 886784 NM_001012968 139886 Hs.612782 NM_001012968 HPRD:12556 SPIN4 - spindlin family, member 4 protein-coding 16-PTNLD14-TUMOR_peak_15541 chr3 196120879 196120930 + 8.10435 NA intron (NM_015562, intron 3 of 10) AluSq2|SINE|Alu 38441 NM_015562 26043 Hs.518524 NM_015562 UBXN7 UBXD7 UBX domain protein 7 protein-coding 16-PTNLD14-TUMOR_peak_13237 chr20 47206024 47206083 + 8.10435 NA Intergenic L1PA4|LINE|L1 217399 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 16-PTNLD14-TUMOR_peak_9734 chr19 1595732 1595788 + 8.08750 NA Intergenic AluSc8|SINE|Alu -3000 NM_001281453 53615 Hs.178728 NM_003926 HPRD:04653 MBD3 - methyl-CpG binding domain protein 3 protein-coding 16-PTNLD14-TUMOR_peak_8829 chr17 45079183 45079231 + 8.08281 NA Intergenic AluSx1|SINE|Alu -22593 NM_203400 388394 Hs.367999 NM_203400 HPRD:14201 RPRML - reprimo-like protein-coding 16-PTNLD14-TUMOR_peak_17114 chr5 55655055 55655222 + 8.06271 NA Intergenic Intergenic 122458 NR_104664 102467147 Hs.650177 NR_104664 LOC102467147 - uncharacterized LOC102467147 ncRNA 16-PTNLD14-TUMOR_peak_700 chr1 47519769 47519816 + 8.06271 NA Intergenic L1PA4|LINE|L1 -13368 NM_178134 199974 Hs.176588 NM_178134 HPRD:13111 CYP4Z1 CYP4A20 cytochrome P450, family 4, subfamily Z, polypeptide 1 protein-coding 16-PTNLD14-TUMOR_peak_12808 chr20 1122767 1122814 + 8.06271 NA intron (NM_178578, intron 5 of 7) AluSx|SINE|Alu 23550 NM_006814 9491 Hs.471917 NM_006814 HPRD:17919 PSMF1 PI31 proteasome (prosome, macropain) inhibitor subunit 1 (PI31) protein-coding 16-PTNLD14-TUMOR_peak_11234 chr2 26809999 26810049 + 8.03051 NA intron (NM_001029881, intron 4 of 6) AluY|SINE|Alu 24543 NM_001105519 339778 Hs.407083 NM_001105519 ENSG00000173557 C2orf70 - chromosome 2 open reading frame 70 protein-coding 16-PTNLD14-TUMOR_peak_14128 chr22 46039544 46039592 + 8.03051 NA Intergenic AluJb|SINE|Alu -28110 NM_001167621 25814 Hs.475125 NM_013236 HPRD:04624 ATXN10 E46L|HUMEEP|SCA10 ataxin 10 protein-coding 16-PTNLD14-TUMOR_peak_5533 chr12 80859163 80859216 + 8.03051 NA intron (NM_001145026, intron 3 of 41) L1PA3|LINE|L1 21063 NM_001145026 374462 Hs.539284 NM_001145026 PTPRQ DFNB84|DFNB84A|PTPGMC1|R-PTP-Q protein tyrosine phosphatase, receptor type, Q protein-coding 16-PTNLD14-TUMOR_peak_5548 chr12 89103432 89103484 + 8.03051 NA Intergenic L1PA2|LINE|L1 -129208 NM_000899 4254 Hs.1048 NM_000899 KITLG FPH2|KL-1|Kitl|MGF|SCF|SF|SHEP7 KIT ligand protein-coding 16-PTNLD14-TUMOR_peak_19873 chr7 76790452 76790516 + 8.03051 NA intron (NM_020879, intron 1 of 18) L1PA3|LINE|L1 38550 NM_020879 57639 Hs.113940 NM_020879 HPRD:11150 CCDC146 - coiled-coil domain containing 146 protein-coding 16-PTNLD14-TUMOR_peak_13728 chr21 47260235 47260288 + 8.03051 NA Intergenic AluY|SINE|Alu -3928 NR_038876 100129027 Hs.689591 NR_038876 ENSG00000205424 LOC100129027 - uncharacterized LOC100129027 ncRNA 16-PTNLD14-TUMOR_peak_3968 chr11 48691170 48691228 + 8.03051 NA Intergenic ALR/Alpha|Satellite|centr 180854 NM_001005512 403253 Hs.554532 NM_001005512 HPRD:17718 OR4A47 OR11-113 olfactory receptor, family 4, subfamily A, member 47 protein-coding 16-PTNLD14-TUMOR_peak_11599 chr2 78071505 78071553 + 8.03051 NA intron (NR_110288, intron 2 of 3) L1PA5|LINE|L1 -71531 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LOC101927926 - uncharacterized LOC101927926 ncRNA 16-PTNLD14-TUMOR_peak_19779 chr7 71571728 71571807 + 8.03051 NA intron (NM_031468, intron 3 of 6) (GGGA)n|Simple_repeat|Simple_repeat 230441 NM_001017440 83698 Hs.592750 NM_031468 HPRD:06209 CALN1 CABP8 calneuron 1 protein-coding 16-PTNLD14-TUMOR_peak_21293 chr8 112403092 112403245 + 8.03051 NA Intergenic AluY|SINE|Alu -154736 NR_125418 101927487 Hs.630004 NR_125418 LOC101927487 - uncharacterized LOC101927487 ncRNA 16-PTNLD14-TUMOR_peak_23408 chrX 71419932 71419985 + 7.98374 NA intron (NM_001170747, intron 3 of 3) AluSz|SINE|Alu 18432 NM_006223 5303 Hs.655623 NM_006223 HPRD:02219 PIN4 EPVH|PAR14|PAR17 protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) protein-coding 16-PTNLD14-TUMOR_peak_459 chr1 36475585 36475651 + 7.98374 NA intron (NM_177422, intron 7 of 16) AluY|SINE|Alu -74058 NM_014466 27285 Hs.127111 NM_014466 HPRD:16410 TEKT2 TEKTB1|TEKTIN-T|h-tektin-t tektin 2 (testicular) protein-coding 16-PTNLD14-TUMOR_peak_22549 chr9 132370458 132370505 + 7.97958 NA promoter-TSS (NM_001286796) promoter-TSS (NM_001286796) -682 NM_001286796 28989 Hs.744027 NM_014064 HPRD:10628 NTMT1 AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NTM1A N-terminal Xaa-Pro-Lys N-methyltransferase 1 protein-coding 16-PTNLD14-TUMOR_peak_15750 chr4 9565966 9566021 + 7.97958 NA Intergenic (CA)n|Simple_repeat|Simple_repeat -8056 NR_031688 100302277 NR_031688 miRBase:MI0006422 MIR548I2 MIR548I-2|MIRN548I2|hsa-mir-548i-2 microRNA 548i-2 ncRNA 16-PTNLD14-TUMOR_peak_15229 chr3 155499297 155499373 + 7.97958 NA intron (NM_173657, intron 3 of 5) AluSc8|SINE|Alu 24720 NM_173657 285315 Hs.350846 NM_173657 HPRD:08095 C3orf33 AC3-33 chromosome 3 open reading frame 33 protein-coding 16-PTNLD14-TUMOR_peak_22466 chr9 127178944 127179016 + 7.95001 NA Intergenic AluY|SINE|Alu -1228 NM_002799 5695 Hs.213470 NM_002799 HPRD:04940 PSMB7 Z proteasome (prosome, macropain) subunit, beta type, 7 protein-coding 16-PTNLD14-TUMOR_peak_15603 chr4 586520 586570 + 7.93813 NA Intergenic SVA_D|Other|Other -32818 NM_000283 5158 Hs.623810 NM_000283 HPRD:01571 PDE6B CSNB3|CSNBAD2|PDEB|RP40|rd1 phosphodiesterase 6B, cGMP-specific, rod, beta protein-coding 16-PTNLD14-TUMOR_peak_7499 chr16 11475989 11476044 + 7.92829 NA Intergenic AluSx1|SINE|Alu 36705 NM_152308 116028 Hs.347524 NM_152308 HPRD:14497 RMI2 BLAP18|C16orf75 RecQ mediated genome instability 2 protein-coding 16-PTNLD14-TUMOR_peak_17249 chr5 73993991 73994040 + 7.92829 NA intron (NM_001292004, intron 5 of 13) AluSp|SINE|Alu 13046 NM_000521 3074 Hs.69293 NM_000521 HPRD:06043 HEXB ENC-1AS|HEL-248 hexosaminidase B (beta polypeptide) protein-coding 16-PTNLD14-TUMOR_peak_13085 chr20 34548626 34548683 + 7.92829 NA Intergenic (TTCCC)n|Simple_repeat|Simple_repeat -5373 NM_016558 51282 Hs.584909 NM_016558 SCAND1 RAZ1|SDP1 SCAN domain containing 1 protein-coding 16-PTNLD14-TUMOR_peak_6024 chr13 51651908 51651958 + 7.92829 NA Intergenic SVA_D|Other|Other -11640 NR_003923 2974 Hs.411573 NM_004129 HPRD:07542 GUCY1B2 GC-SB2 guanylate cyclase 1, soluble, beta 2 (pseudogene) pseudo 16-PTNLD14-TUMOR_peak_3695 chr11 13845438 13845485 + 7.92316 NA Intergenic L1PA4|LINE|L1 -138723 NM_006108 10418 Hs.643864 NM_006108 SPON1 VSGP/F-spondin|f-spondin spondin 1, extracellular matrix protein protein-coding 16-PTNLD14-TUMOR_peak_19279 chr7 4123331 4123378 + 7.89821 NA intron (NM_152744, intron 22 of 44) C-rich|Low_complexity|Low_complexity -45963 NM_001079653 221935 Hs.653013 NM_152744 HPRD:07388 SDK1 - sidekick cell adhesion molecule 1 protein-coding 16-PTNLD14-TUMOR_peak_559 chr1 40073752 40073799 + 7.89821 NA Intergenic AluY|SINE|Alu -31254 NM_003819 8761 Hs.169900 NM_003819 HPRD:04557 PABPC4 APP-1|APP1|PABP4|iPABP poly(A) binding protein, cytoplasmic 4 (inducible form) protein-coding 16-PTNLD14-TUMOR_peak_11868 chr2 99481246 99481295 + 7.87878 NA intron (NM_207362, intron 1 of 9) AluSx1|SINE|Alu 71414 NM_207362 343990 Hs.469398 NM_207362 HPRD:14620 KIAA1211L C2orf55 KIAA1211-like protein-coding 16-PTNLD14-TUMOR_peak_23714 chrX 147408731 147408780 + 7.87878 NA Intergenic L1PA4|LINE|L1 -173384 NM_001169124 2334 Hs.496911 NM_002025 HPRD:02397 AFF2 FMR2|FMR2P|FRAXE|MRX2|OX19 AF4/FMR2 family, member 2 protein-coding 16-PTNLD14-TUMOR_peak_11839 chr2 97343373 97343541 + 7.87878 NA intron (NM_001293083, intron 19 of 52) AluSp|SINE|Alu 34983 NM_001293083 90342 Hs.534025 NM_001077400 FER1L5 - fer-1-like family member 5 protein-coding 16-PTNLD14-TUMOR_peak_1915 chr1 186244513 186244561 + 7.87878 NA intron (NR_046941, intron 1 of 1) AluSc|SINE|Alu -20868 NM_001127709 10216 Hs.647723 NM_005807 HPRD:05047 PRG4 CACP|HAPO|JCAP|MSF|SZP|bG174L6.2 proteoglycan 4 protein-coding 16-PTNLD14-TUMOR_peak_21088 chr8 72697044 72697094 + 7.85813 NA Intergenic L1PA3|LINE|L1 -58289 NR_033652 100132891 Hs.137674 NR_033651 ENSG00000235531 LOC100132891 - uncharacterized LOC100132891 ncRNA 16-PTNLD14-TUMOR_peak_22464 chr9 127167051 127167115 + 7.82952 NA intron (NM_002799, intron 5 of 7) AluSz|SINE|Alu 10669 NM_002799 5695 Hs.213470 NM_002799 HPRD:04940 PSMB7 Z proteasome (prosome, macropain) subunit, beta type, 7 protein-coding 16-PTNLD14-TUMOR_peak_12729 chr2 237012314 237012368 + 7.82952 NA intron (NM_001037131, intron 16 of 17) AluSx3|SINE|Alu 64311 NM_001485 2637 Hs.184945 NM_001485 HPRD:03087 GBX2 - gastrulation brain homeobox 2 protein-coding 16-PTNLD14-TUMOR_peak_5103 chr12 27561061 27561134 + 7.82206 NA intron (NM_001248002, intron 13 of 15) L1PA4|LINE|L1 38470 NR_109975 101928646 Hs.434269 NR_109975 ENSG00000245311 ARNTL2-AS1 - ARNTL2 antisense RNA 1 ncRNA 16-PTNLD14-TUMOR_peak_4017 chr11 50770173 50770309 + 7.81805 NA Intergenic ALR/Alpha|Satellite|centr 401923 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DEAH (Asp-Glu-Ala-His) box helicase 9 pseudogene pseudo 16-PTNLD14-TUMOR_peak_18624 chr6 46959161 46959213 + 7.81705 NA Intergenic L1PA6|LINE|L1 -36512 NM_015234 221395 Hs.362806 NM_015234 HPRD:11010 GPR116 KPG_001 G protein-coupled receptor 116 protein-coding 16-PTNLD14-TUMOR_peak_22705 chr9_gl000199_random 92957 93007 + 7.81117 NA NA ALR/Alpha|Satellite|centr NA NA 16-PTNLD14-TUMOR_peak_10063 chr19 14880719 14880773 + 7.81052 NA intron (NM_013447, intron 5 of 20) AluY|SINE|Alu 6993 NM_001271052 30817 Hs.531619 NM_013447 HPRD:07308 EMR2 CD312 egf-like module containing, mucin-like, hormone receptor-like 2 protein-coding 16-PTNLD14-TUMOR_peak_11717 chr2 90483665 90483718 + 7.80790 NA Intergenic (GCTG)n|Simple_repeat|Simple_repeat 1364284 NR_027238 654342 Hs.469287 NR_027238 ENSG00000143429 LOC654342 - lymphocyte-specific protein 1 pseudogene pseudo 16-PTNLD14-TUMOR_peak_17712 chr5 141455017 141455097 + 7.78361 NA Intergenic SVA_F|Other|Other -33267 NM_030571 80762 Hs.9788 NM_030571 HPRD:14816 NDFIP1 N4WBP5 Nedd4 family interacting protein 1 protein-coding 16-PTNLD14-TUMOR_peak_1245 chr1 121456424 121456473 + 7.78361 NA Intergenic ALR/Alpha|Satellite|centr 195538 NR_003955 647121 Hs.697682 NR_003955 EMBP1 - embigin pseudogene 1 pseudo 16-PTNLD14-TUMOR_peak_22237 chr9 98806386 98806455 + 7.78094 NA Intergenic AluSg|SINE|Alu -21701 NR_033838 158435 Hs.652615 NR_033838 LOC158435 - uncharacterized LOC158435 ncRNA 16-PTNLD14-TUMOR_peak_14896 chr3 117782843 117782898 + 7.78094 NA Intergenic L1PA3|LINE|L1 -879053 NR_046230 100506765 Hs.660823 NR_046230 ENSG00000239877 IGSF11-AS1 - IGSF11 antisense RNA 1 ncRNA 16-PTNLD14-TUMOR_peak_7243 chr15 99353970 99354057 + 7.73373 NA intron (NM_001291858, intron 2 of 20) AluY|SINE|Alu 26358 NR_039864 100616432 NR_039864 MIR4714 - microRNA 4714 ncRNA 16-PTNLD14-TUMOR_peak_13618 chr21 38281253 38281308 + 7.73373 NA intron (NM_001242785, intron 6 of 11) AluY|SINE|Alu 57676 NM_001242784 3141 Hs.371350 NM_000411 HPRD:08360 HLCS HCS holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase) protein-coding 16-PTNLD14-TUMOR_peak_23552 chrX 102539282 102539331 + 7.73373 NA Intergenic L1PA4|LINE|L1 -7509 NM_001012979 340543 Hs.403462 NM_001012979 HPRD:18502 TCEAL5 WEX4 transcription elongation factor A (SII)-like 5 protein-coding 16-PTNLD14-TUMOR_peak_3973 chr11 48810273 48810320 + 7.71424 NA Intergenic ALR/Alpha|Satellite|centr -242856 NM_001206626 283116 Hs.448644 NM_001206626 ENSG00000182053 TRIM49B - tripartite motif containing 49B protein-coding 16-PTNLD14-TUMOR_peak_4756 chr11 129587878 129587927 + 7.70263 NA Intergenic L1PA4|LINE|L1 -97839 NM_138788 120224 Hs.504301 NM_138788 HPRD:14020 TMEM45B - transmembrane protein 45B protein-coding 16-PTNLD14-TUMOR_peak_5054 chr12 22414299 22414347 + 7.70263 NA intron (NM_003034, intron 2 of 4) AluSx1|SINE|Alu 73325 NM_003034 6489 Hs.408614 NM_003034 HPRD:03078 ST8SIA1 GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 protein-coding 16-PTNLD14-TUMOR_peak_21763 chr9 27052948 27052995 + 7.68634 NA intron (NM_001099222, intron 16 of 19) AluYf4|SINE|Alu -47280 NM_022901 64922 Hs.128071 NM_022901 HPRD:14313 LRRC19 - leucine rich repeat containing 19 protein-coding 16-PTNLD14-TUMOR_peak_3883 chr11 36503830 36503877 + 7.68634 NA Intergenic L1PA2|LINE|L1 28010 NM_145803 7189 Hs.444172 NM_004620 TRAF6 MGC:3310|RNF85 TNF receptor-associated factor 6, E3 ubiquitin protein ligase protein-coding 16-PTNLD14-TUMOR_peak_8632 chr17 25385886 25385943 + 7.68634 NA Intergenic L1PA3|LINE|L1 235108 NR_039748 100616277 NR_039748 miRBase:MI0016889 MIR4522 - microRNA 4522 ncRNA 16-PTNLD14-TUMOR_peak_24063 chrY 28161936 28161983 + 7.68634 NA Intergenic L1PA5|LINE|L1 287322 NR_002176 474148 Hs.511777 NR_002176 TTTY3B LNCRNA00122|NCRNA00122 testis-specific transcript, Y-linked 3B (non-protein coding) ncRNA 16-PTNLD14-TUMOR_peak_19546 chr7 53702851 53702898 + 7.68634 NA Intergenic AluSx|SINE|Alu 176750 NR_038371 401337 Hs.531378 NM_001001707 HPRD:16997 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 16-PTNLD14-TUMOR_peak_11183 chr2 19511407 19511454 + 7.68634 NA Intergenic L1PA2|LINE|L1 -36760 NR_039914 100616307 NR_039914 miRBase:MI0017398 MIR4757 - microRNA 4757 ncRNA 16-PTNLD14-TUMOR_peak_16469 chr4 144878083 144878138 + 7.68634 NA Intergenic AluSz|SINE|Alu -51394 NM_198682 2996 Hs.654368 NM_002102 HPRD:00723 GYPE GPE|MNS|MiIX glycophorin E (MNS blood group) protein-coding 16-PTNLD14-TUMOR_peak_6568 chr14 67152406 67152453 + 7.68634 NA intron (NM_001024218, intron 2 of 21) L1PA5|LINE|L1 178304 NM_001024218 10243 Hs.208765 NM_020806 HPRD:04893 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 16-PTNLD14-TUMOR_peak_11469 chr2 61861546 61861593 + 7.68634 NA Intergenic AluSx1|SINE|Alu -96151 NM_003400 7514 Hs.370770 NM_003400 HPRD:03975 XPO1 CRM1|emb|exp1 exportin 1 protein-coding 16-PTNLD14-TUMOR_peak_18758 chr6 75412535 75412596 + 7.68634 NA Intergenic L1PA3|LINE|L1 503058 NM_080645 1303 Hs.101302 NM_004370 HPRD:00377 COL12A1 BA209D8.1|COL12A1L|DJ234P15.1 collagen, type XII, alpha 1 protein-coding 16-PTNLD14-TUMOR_peak_23653 chrX 128301343 128301390 + 7.68634 NA Intergenic L1PA3|LINE|L1 356116 NM_001282874 6594 Hs.152292 NM_003069 HPRD:02055 SMARCA1 ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SNF2LT|SWI|SWI2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 protein-coding 16-PTNLD14-TUMOR_peak_22386 chr9 117495972 117496026 + 7.68634 NA Intergenic AluY|SINE|Alu -51630 NM_001199233 100505478 Hs.200101 NM_001199233 LOC100505478 - uncharacterized LOC100505478 protein-coding 16-PTNLD14-TUMOR_peak_4642 chr11 115727843 115727890 + 7.68634 NA Intergenic L1PA3|LINE|L1 -96948 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 16-PTNLD14-TUMOR_peak_19165 chr6 163462277 163462342 + 7.68634 NA intron (NM_152410, intron 3 of 6) AluY|SINE|Alu 12884 NR_110872 101929239 Hs.571035 NR_110871 ENSG00000225437 LOC101929239 - uncharacterized LOC101929239 ncRNA 16-PTNLD14-TUMOR_peak_19464 chr7 37505439 37505486 + 7.68634 NA Intergenic AluY|SINE|Alu -16533 NM_001206480 9844 Hs.434989 NM_014800 HPRD:12102 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 16-PTNLD14-TUMOR_peak_6140 chr13 101957340 101957388 + 7.68634 NA intron (NM_052867, intron 7 of 43) AluSc|SINE|Alu 111449 NM_052867 259232 Hs.525146 NM_052867 HPRD:15647 NALCN CanIon|INNFD|VGCNL1|bA430M15.1 sodium leak channel, non-selective protein-coding 16-PTNLD14-TUMOR_peak_23127 chrX 32504856 32504923 + 7.68634 NA intron (NM_004009, intron 20 of 78) L1P1|LINE|L1 -74518 NM_004011 1756 Hs.495912 NM_000109 HPRD:02303 DMD BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272|MRX85 dystrophin protein-coding 16-PTNLD14-TUMOR_peak_23474 chrX 82058375 82058423 + 7.68634 NA Intergenic L1PA3|LINE|L1 -704870 NM_000307 5456 Hs.2229 NM_000307 HPRD:02076 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 16-PTNLD14-TUMOR_peak_22242 chr9 98881843 98881903 + 7.68634 NA Intergenic AluY|SINE|Alu -3180 NM_001256408 158434 Hs.381771 NM_001256408 LOC158434 - uncharacterized LOC158434 protein-coding 16-PTNLD14-TUMOR_peak_23708 chrX 144314630 144314677 + 7.68634 NA Intergenic AluY|SINE|Alu -14454 NM_001009614 494118 Hs.551270 NM_001009614 SPANXN1 CT11.6 SPANX family, member N1 protein-coding 16-PTNLD14-TUMOR_peak_16228 chr4 100345242 100345289 + 7.68634 NA intron (NM_001166504, intron 5 of 8) L1PA3|LINE|L1 11026 NM_001166504 131 Hs.389 NM_000673 HPRD:02515 ADH7 ADH4 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide protein-coding 16-PTNLD14-TUMOR_peak_16314 chr4 118602737 118602784 + 7.68634 NA intron (NR_125757, intron 3 of 3) L1PA5|LINE|L1 253206 NR_125757 103689918 Hs.582062 NR_125757 LINC01378 - long intergenic non-protein coding RNA 1378 ncRNA 16-PTNLD14-TUMOR_peak_4349 chr11 71035716 71035763 + 7.68634 NA Intergenic AluSz|SINE|Alu 98661 NR_038862 399923 Hs.128191 NM_001001680 HPRD:13457 FLJ42102 - uncharacterized LOC399923 ncRNA 16-PTNLD14-TUMOR_peak_6055 chr13 66280016 66280065 + 7.68634 NA Intergenic L1PA3|LINE|L1 -1119261 NR_046527 100874064 Hs.569284 NR_046527 ENSG00000228842 PCDH9-AS2 - PCDH9 antisense RNA 2 ncRNA 16-PTNLD14-TUMOR_peak_5562 chr12 93357463 93357510 + 7.68634 NA Intergenic AluSq4|SINE|Alu -34379 NM_003566 8411 Hs.567367 NM_003566 HPRD:05460 EEA1 MST105|MSTP105|ZFYVE2 early endosome antigen 1 protein-coding 16-PTNLD14-TUMOR_peak_14488 chr3 48563735 48563782 + 7.68634 NA intron (NM_004567, intron 9 of 13) AluSx|SINE|Alu -21499 NM_001272066 51246 Hs.414579 NM_016479 HPRD:06290 SHISA5 SCOTIN shisa family member 5 protein-coding 16-PTNLD14-TUMOR_peak_6682 chr14 91599430 91599477 + 7.68634 NA intron (NM_001286471, intron 1 of 13) AluSx1|SINE|Alu 6683 NR_003709 100124539 Hs.693444 NR_003709 ENSG00000221102 SNORA11B - small nucleolar RNA, H/ACA box 11B snoRNA 16-PTNLD14-TUMOR_peak_14701 chr3 75116458 75116505 + 7.68634 NA Intergenic AluYa5|SINE|Alu -147146 NR_049831 100846999 NR_049831 MIR4444-2 - microRNA 4444-2 ncRNA 16-PTNLD14-TUMOR_peak_17136 chr5 58580693 58580740 + 7.68634 NA intron (NM_001165899, intron 3 of 16) L1PA2|LINE|L1 -8771 NM_001197220 5144 Hs.117545 NM_006203 HPRD:02530 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D, cAMP-specific protein-coding 16-PTNLD14-TUMOR_peak_19423 chr7 26839458 26839505 + 7.68634 NA intron (NM_003930, intron 4 of 12) AluY|SINE|Alu 64860 NM_003930 8935 Hs.200770 NM_003930 HPRD:05558 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 16-PTNLD14-TUMOR_peak_7225 chr15 93235466 93235521 + 7.68634 NA Intergenic L1PA2|LINE|L1 -36462 NM_207446 400451 Hs.27373 NM_207446 HPRD:14220 FAM174B - family with sequence similarity 174, member B protein-coding 16-PTNLD14-TUMOR_peak_14632 chr3 66793501 66793569 + 7.68634 NA Intergenic AluY|SINE|Alu -242690 NM_015541 26018 Hs.518055 NM_015541 HPRD:10057 LRIG1 LIG-1|LIG1 leucine-rich repeats and immunoglobulin-like domains 1 protein-coding 16-PTNLD14-TUMOR_peak_16040 chr4 59207925 59207972 + 7.68634 NA Intergenic L1P1|LINE|L1 -1231397 NM_001253835 3490 Hs.479808 NM_001553 HPRD:04183 IGFBP7 AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF insulin-like growth factor binding protein 7 protein-coding 16-PTNLD14-TUMOR_peak_12373 chr2 188462928 188462982 + 7.68634 NA Intergenic L1PA3|LINE|L1 -43736 NM_006287 7035 Hs.516578 NM_006287 HPRD:01064 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) protein-coding 16-PTNLD14-TUMOR_peak_9346 chr18 6168204 6168251 + 7.68634 NA intron (NM_173464, intron 13 of 19) L1PA4|LINE|L1 -88516 NR_110765 101927150 NR_110765 LOC101927150 - uncharacterized LOC101927150 ncRNA 16-PTNLD14-TUMOR_peak_3443 chr10 131322897 131322964 + 7.68634 NA intron (NM_002412, intron 1 of 4) AluY|SINE|Alu 57476 NM_002412 4255 Hs.501522 NM_002412 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 16-PTNLD14-TUMOR_peak_8963 chr17 56808711 56808758 + 7.68634 NA intron (NM_058216, intron 7 of 8) AluSp|SINE|Alu -24496 NM_014906 22843 Hs.245044 NM_014906 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent, 1E protein-coding 16-PTNLD14-TUMOR_peak_6049 chr13 61175751 61175798 + 7.68634 NA Intergenic AluSz|SINE|Alu -71315 NR_047003 101926930 Hs.578045 NR_047003 LINC00378 - long intergenic non-protein coding RNA 378 ncRNA 16-PTNLD14-TUMOR_peak_13518 chr21 17418746 17418793 + 7.68634 NA Intergenic AluY|SINE|Alu -24073 NR_027790 388815 Hs.473394 NM_001005732 HPRD:10746 MIR99AHG C21orf34|C21orf35|FLJ38295|LINC00478|MONC mir-99a-let-7c cluster host gene (non-protein coding) ncRNA 16-PTNLD14-TUMOR_peak_17430 chr5 103904258 103904312 + 7.68634 NA Intergenic AluYf4|SINE|Alu -530890 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 16-PTNLD14-TUMOR_peak_15279 chr3 163352835 163352892 + 7.68634 NA Intergenic L1PA2|LINE|L1 -331774 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 16-PTNLD14-TUMOR_peak_21664 chr9 6028607 6028654 + 7.68634 NA Intergenic AluY|SINE|Alu -12990 NM_012416 26953 Hs.167496 NM_012416 HPRD:17953 RANBP6 - RAN binding protein 6 protein-coding 16-PTNLD14-TUMOR_peak_18436 chr6 32846265 32846315 + 7.68634 NA Intergenic AluY|SINE|Alu -15663 NR_037178 100294145 Hs.559456 NR_037177 LOC100294145 - uncharacterized LOC100294145 ncRNA 16-PTNLD14-TUMOR_peak_12737 chr2 237151909 237151972 + 7.68634 NA intron (NM_212556, intron 1 of 5) AluY|SINE|Alu 21048 NM_212556 401036 Hs.639909 NM_212556 HPRD:16514 ASB18 ASB-18 ankyrin repeat and SOCS box containing 18 protein-coding 16-PTNLD14-TUMOR_peak_16209 chr4 93876065 93876117 + 7.68634 NA intron (NM_001286838, intron 2 of 14) L1PA3|LINE|L1 650541 NM_001510 2895 Hs.162727 NM_001510 HPRD:06781 GRID2 GluD2 glutamate receptor, ionotropic, delta 2 protein-coding 16-PTNLD14-TUMOR_peak_11210 chr2 24473787 24473834 + 7.68634 NA intron (NM_019595, intron 24 of 38) AluSz|SINE|Alu 75838 NM_001040710 653140 Hs.741736 NM_001040710 ENSG00000186453 FAM228A C2orf84 family with sequence similarity 228, member A protein-coding 16-PTNLD14-TUMOR_peak_16233 chr4 101959548 101959599 + 7.68634 NA intron (NM_001130691, intron 11 of 12) AluSg|SINE|Alu 202456 NR_107033 102465868 NR_107033 MIR8066 hsa-mir-8066 microRNA 8066 ncRNA 16-PTNLD14-TUMOR_peak_23699 chrX 139720555 139720602 + 7.68634 NA Intergenic L1PA6|LINE|L1 -71346 NR_028344 286411 Hs.317627 NR_028344 ENSG00000203930 LINC00632 - long intergenic non-protein coding RNA 632 ncRNA 16-PTNLD14-TUMOR_peak_23786 chrX 154786781 154786828 + 7.68634 NA intron (NM_001184797, intron 1 of 6) MER11C|LTR|ERVK 55818 NM_018196 55217 Hs.133321 NM_018196 HPRD:06743 TMLHE AUTSX6|BBOX2|TMLD|TMLH|TMLHED|XAP130 trimethyllysine hydroxylase, epsilon protein-coding 16-PTNLD14-TUMOR_peak_16044 chr4 59793531 59793585 + 7.68634 NA Intergenic L1PA2|LINE|L1 -1817007 NM_001253835 3490 Hs.479808 NM_001553 HPRD:04183 IGFBP7 AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF insulin-like growth factor binding protein 7 protein-coding 16-PTNLD14-TUMOR_peak_8759 chr17 41157183 41157230 + 7.68634 NA Intergenic AluSz|SINE|Alu -1536 NM_005533 3430 Hs.632258 NM_005533 HPRD:02844 IFI35 IFP35 interferon-induced protein 35 protein-coding 16-PTNLD14-TUMOR_peak_5976 chr13 41336816 41336863 + 7.68634 NA intron (NM_005830, intron 2 of 6) AluJo|SINE|Alu 8508 NM_005830 10240 Hs.596607 NM_005830 HPRD:10098 MRPS31 IMOGN38|MRP-S31|S31mt mitochondrial ribosomal protein S31 protein-coding 16-PTNLD14-TUMOR_peak_12402 chr2 193102108 193102155 + 7.68634 NA Intergenic L1PA4|LINE|L1 -42487 NM_016192 23671 Hs.144513 NM_016192 HPRD:05760 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR transmembrane protein with EGF-like and two follistatin-like domains 2 protein-coding 16-PTNLD14-TUMOR_peak_14249 chr3 12139157 12139205 + 7.68634 NA intron (NM_133625, intron 2 of 13) L1PA5|LINE|L1 61670 NM_003256 7079 Hs.591665 NM_003256 HPRD:03557 TIMP4 - TIMP metallopeptidase inhibitor 4 protein-coding 16-PTNLD14-TUMOR_peak_18919 chr6 107603972 107604019 + 7.68634 NA intron (NM_020381, intron 2 of 7) AluY|SINE|Alu -168359 NM_001080450 57673 Hs.418045 NM_001080450 ENSG00000178409 BEND3 KIAA1553 BEN domain containing 3 protein-coding 16-PTNLD14-TUMOR_peak_23353 chrX 67797781 67797833 + 7.68634 NA Intergenic L1PA4|LINE|L1 -69704 NM_001142503 9754 Hs.95140 NM_014725 HPRD:06730 STARD8 ARHGAP38|DLC3|STARTGAP3 StAR-related lipid transfer (START) domain containing 8 protein-coding 16-PTNLD14-TUMOR_peak_17471 chr5 112646784 112646831 + 7.68634 NA intron (NM_001085377, intron 3 of 18) FRAM|SINE|Alu -16195 NM_002387 4163 Hs.593171 NM_002387 HPRD:01157 MCC MCC1 mutated in colorectal cancers protein-coding 16-PTNLD14-TUMOR_peak_15827 chr4 35580294 35580342 + 7.68634 NA Intergenic L1PA4|LINE|L1 -665420 NR_122079 439933 Hs.591071 NR_122079 ENSG00000247193 LOC439933 - uncharacterized LOC439933 ncRNA 16-PTNLD14-TUMOR_peak_23471 chrX 80325462 80325518 + 7.68634 NA Intergenic L1PA6|LINE|L1 -131813 NM_003022 6451 Hs.108029 NM_003022 HPRD:02178 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate-rich protein like protein-coding 16-PTNLD14-TUMOR_peak_11334 chr2 42436801 42436849 + 7.68634 NA intron (NM_019063, intron 1 of 22) AluSp|SINE|Alu -39454 NR_110584 102723824 Hs.639826 NR_110584 LOC102723824 - uncharacterized LOC102723824 ncRNA 16-PTNLD14-TUMOR_peak_23343 chrX 66064404 66064451 + 7.68634 NA Intergenic L1PA8|LINE|L1 -205287 NM_001199687 60401 Hs.302017 NM_021783 HPRD:02230 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 16-PTNLD14-TUMOR_peak_19769 chr7 69696520 69696567 + 7.68634 NA intron (NM_001127231, intron 4 of 17) AluY|SINE|Alu 632638 NM_001127231 26053 Hs.21631 NM_015570 HPRD:06276 AUTS2 FBRSL2|MRD26 autism susceptibility candidate 2 protein-coding 16-PTNLD14-TUMOR_peak_918 chr1 85252794 85252841 + 7.68634 NA Intergenic AluSg|SINE|Alu -96577 NM_014021 117178 Hs.22587 NM_014021 HPRD:10566 SSX2IP ADIP synovial sarcoma, X breakpoint 2 interacting protein protein-coding 16-PTNLD14-TUMOR_peak_23494 chrX 85608785 85608837 + 7.68634 NA intron (NM_001139515, intron 1 of 11) L1HS|LINE|L1 90840 NM_001139515 117154 Hs.86603 NM_053281 HPRD:06481 DACH2 - dachshund family transcription factor 2 protein-coding 16-PTNLD14-TUMOR_peak_23549 chrX 102032562 102032609 + 7.68634 NA intron (NR_038988, intron 2 of 7) L1PA4|LINE|L1 8490 NR_038988 100287765 Hs.687084 NR_038988 ENSG00000223546 LINC00630 LL0XNC01-157D4.1|LL0XNC01-237H1.2 long intergenic non-protein coding RNA 630 ncRNA 16-PTNLD14-TUMOR_peak_8910 chr17 51608671 51608718 + 7.68634 NA Intergenic L1PA3|LINE|L1 -291545 NM_032559 84643 Hs.226805 NM_032559 HPRD:10053 KIF2B - kinesin family member 2B protein-coding 16-PTNLD14-TUMOR_peak_21810 chr9 33891602 33891653 + 7.68634 NA intron (NM_017811, intron 2 of 4) AluSz|SINE|Alu 42735 NM_001282530 55833 Hs.493739 NM_018449 HPRD:06748 UBAP2 UBAP-2 ubiquitin associated protein 2 protein-coding 16-PTNLD14-TUMOR_peak_16235 chr4 102009490 102009537 + 7.68634 NA intron (NM_001130691, intron 6 of 12) AluY|SINE|Alu 152516 NR_107033 102465868 NR_107033 MIR8066 hsa-mir-8066 microRNA 8066 ncRNA 16-PTNLD14-TUMOR_peak_5581 chr12 95965054 95965101 + 7.68634 NA Intergenic AluJr|SINE|Alu -19811 NM_032147 84101 Hs.646421 NM_032147 HPRD:15636 USP44 - ubiquitin specific peptidase 44 protein-coding 16-PTNLD14-TUMOR_peak_21731 chr9 20080744 20080791 + 7.68634 NA Intergenic L1PA4|LINE|L1 -293750 NM_020344 25769 Hs.283014 NM_020344 HPRD:15351 SLC24A2 NCKX2 solute carrier family 24 (sodium/potassium/calcium exchanger), member 2 protein-coding 16-PTNLD14-TUMOR_peak_11316 chr2 39317726 39317773 + 7.68634 NA intron (NM_005633, intron 1 of 22) AluSx1|SINE|Alu 29855 NM_005633 6654 Hs.709893 NM_005633 HPRD:01681 SOS1 GF1|GGF1|GINGF|HGF|NS4 son of sevenless homolog 1 (Drosophila) protein-coding 16-PTNLD14-TUMOR_peak_16021 chr4 55721165 55721212 + 7.68634 NA Intergenic AluSz6|SINE|Alu 197093 NM_001093772 3815 Hs.479754 NM_000222 HPRD:01287 KIT C-Kit|CD117|PBT|SCFR v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog protein-coding 16-PTNLD14-TUMOR_peak_22480 chr9 127599598 127599645 + 7.68634 NA Intergenic AluSx|SINE|Alu -16075 NM_001276374 401551 Hs.343383 NM_001045476 ENSG00000136918 WDR38 - WD repeat domain 38 protein-coding 16-PTNLD14-TUMOR_peak_16932 chr5 34996840 34996887 + 7.68634 NA Intergenic AluSz|SINE|Alu 51377 NM_031900 64902 Hs.34494 NM_031900 HPRD:10638 AGXT2 AGT2|DAIBAT alanine--glyoxylate aminotransferase 2 protein-coding 16-PTNLD14-TUMOR_peak_4650 chr11 117106035 117106145 + 7.68634 NA intron (NM_001077239, intron 2 of 14) AluY|SINE|Alu 2638 NM_001077239 257160 Hs.591934 NM_207343 HPRD:16815 RNF214 - ring finger protein 214 protein-coding 16-PTNLD14-TUMOR_peak_15592 chr4 440847 440901 + 7.68634 NA intron (NM_133474, intron 2 of 2) AluY|SINE|Alu 27124 NR_002451 79963 Hs.745030 NM_024903 ABCA11P ABCA11|EST1133530 ATP-binding cassette, sub-family A (ABC1), member 11, pseudogene pseudo 16-PTNLD14-TUMOR_peak_7200 chr15 85942725 85942772 + 7.68634 NA intron (NM_007200, intron 1 of 36) AluYb8|SINE|Alu 18901 NM_006738 11214 Hs.459211 NM_006738 HPRD:05253 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A kinase (PRKA) anchor protein 13 protein-coding 16-PTNLD14-TUMOR_peak_3136 chr10 79200655 79200702 + 7.68634 NA intron (NM_001271519, intron 1 of 28) AluY|SINE|Alu 196899 NM_001271520 3778 Hs.144795 NM_002247 HPRD:15967 KCNMA1 BKTM|KCa1.1|MaxiK|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|mSLO1 potassium large conductance calcium-activated channel, subfamily M, alpha member 1 protein-coding 16-PTNLD14-TUMOR_peak_8448 chr17 6848456 6848508 + 7.68634 NA Intergenic L1PA3|LINE|L1 -50902 NM_000697 239 Hs.654431 NM_000697 HPRD:01066 ALOX12 12-LOX|12S-LOX|LOG12 arachidonate 12-lipoxygenase protein-coding 16-PTNLD14-TUMOR_peak_5991 chr13 43822141 43822188 + 7.68634 NA intron (NM_001127615, intron 14 of 16) AluYa5|SINE|Alu 134863 NR_047013 100874159 Hs.633241 NR_047013 LINC00400 - long intergenic non-protein coding RNA 400 ncRNA 16-PTNLD14-TUMOR_peak_23074 chrX 18527339 18527386 + 7.68634 NA intron (NM_001037343, intron 3 of 21) (CA)n|Simple_repeat|Simple_repeat 67018 NM_001037343 6792 Hs.659851 NM_003159 HPRD:02190 CDKL5 EIEE2|ISSX|STK9 cyclin-dependent kinase-like 5 protein-coding 16-PTNLD14-TUMOR_peak_8685 chr17 30113139 30113197 + 7.68634 NA Intergenic L1PA4|LINE|L1 73158 NM_018405 55352 Hs.462729 NM_018405 HPRD:13675 COPRS C17orf79|COPR5|HSA272196|TTP1 coordinator of PRMT5, differentiation stimulator protein-coding 16-PTNLD14-TUMOR_peak_23410 chrX 71647480 71647531 + 7.68634 NA intron (NR_051952, intron 8 of 9) L1PA4|LINE|L1 -120468 NM_001144886 4435 Hs.40403 NM_004143 HPRD:02146 CITED1 MSG1 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1 protein-coding 16-PTNLD14-TUMOR_peak_14751 chr3 89170269 89170316 + 7.68634 NA intron (NM_182644, intron 1 of 6) AluY|SINE|Alu 13618 NM_182644 2042 Hs.123642 NM_005233 HPRD:01555 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 16-PTNLD14-TUMOR_peak_22650 chr9 140423375 140423422 + 7.68634 NA intron (NM_152286, intron 7 of 33) AluY|SINE|Alu 21623 NM_152286 375775 Hs.294147 NM_152286 HPRD:12933 PNPLA7 C9orf111|NTE-R1|NTEL1 patatin-like phospholipase domain containing 7 protein-coding 16-PTNLD14-TUMOR_peak_16218 chr4 98608193 98608240 + 7.68634 NA intron (NM_174952, intron 10 of 10) AluY|SINE|Alu 320139 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 16-PTNLD14-TUMOR_peak_12157 chr2 149156234 149156281 + 7.68634 NA intron (NM_018328, intron 5 of 14) L1PA4|LINE|L1 -246303 NM_015630 26122 Hs.23270 NM_015630 HPRD:13274 EPC2 EPC-LIKE enhancer of polycomb homolog 2 (Drosophila) protein-coding 16-PTNLD14-TUMOR_peak_5568 chr12 94605954 94606001 + 7.68634 NA intron (NM_005761, intron 5 of 30) AluYa5|SINE|Alu -50320 NR_037687 10154 Hs.584845 NM_005761 HPRD:05036 PLXNC1 CD232|PLXN-C1|VESPR plexin C1 protein-coding 16-PTNLD14-TUMOR_peak_20648 chr8 5435379 5435431 + 7.68634 NA Intergenic AluYa5|SINE|Alu -583077 NM_033225 64478 Hs.571466 NM_033225 HPRD:10523 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 16-PTNLD14-TUMOR_peak_18123 chr6 7608502 7608549 + 7.68634 NA intron (NM_152551, intron 8 of 8) AluSq2|SINE|Alu 18093 NM_152551 154007 Hs.13366 NM_152551 HPRD:12858 SNRNP48 C6orf151|dJ336K20B.1|dJ512B11.2 small nuclear ribonucleoprotein 48kDa (U11/U12) protein-coding 16-PTNLD14-TUMOR_peak_20111 chr7 104249033 104249080 + 7.68634 NA intron (NM_199000, intron 1 of 2) L1PA4|LINE|L1 195483 NR_034141 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 16-PTNLD14-TUMOR_peak_6096 chr13 86060461 86060508 + 7.68634 NA intron (NR_046989, intron 1 of 3) AluSc5|SINE|Alu 122746 NR_046989 100874137 Hs.742643 NR_046989 ENSG00000226317 LINC00351 - long intergenic non-protein coding RNA 351 ncRNA 16-PTNLD14-TUMOR_peak_10287 chr19 24625720 24625786 + 7.68634 NA Intergenic ALR/Alpha|Satellite|centr -279504 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 16-PTNLD14-TUMOR_peak_5000 chr12 16053237 16053286 + 7.68634 NA intron (NM_007178, intron 8 of 9) AluSg|SINE|Alu -10845 NM_001300779 51071 Hs.39429 NM_015954 HPRD:13138 DERA DEOC deoxyribose-phosphate aldolase (putative) protein-coding 16-PTNLD14-TUMOR_peak_8694 chr17 32733256 32733303 + 7.68634 NA Intergenic AluSx|SINE|Alu -43027 NM_002981 6346 Hs.72918 NM_002981 HPRD:01654 CCL1 I-309|P500|SCYA1|SISe|TCA3 chemokine (C-C motif) ligand 1 protein-coding 16-PTNLD14-TUMOR_peak_21036 chr8 63368958 63369005 + 7.68634 NA intron (NM_173688, intron 1 of 5) AluY|SINE|Alu 207480 NM_173688 286183 Hs.654662 NM_173688 NKAIN3 FAM77D Na+/K+ transporting ATPase interacting 3 protein-coding 16-PTNLD14-TUMOR_peak_20653 chr8 6225297 6225351 + 7.68634 NA Intergenic AluY|SINE|Alu 38745 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 16-PTNLD14-TUMOR_peak_17729 chr5 144532726 144532776 + 7.68634 NA Intergenic L1PA2|LINE|L1 682181 NM_138492 153768 Hs.314261 NM_138492 HPRD:14479 PRELID2 - PRELI domain containing 2 protein-coding 16-PTNLD14-TUMOR_peak_23630 chrX 124177926 124177973 + 7.68634 NA Intergenic L1PA2|LINE|L1 -80283 NM_001163278 10178 Hs.23796 NM_014253 HPRD:06669 TENM1 ODZ1|ODZ3|TEN-M1|TNM|TNM1 teneurin transmembrane protein 1 protein-coding 16-PTNLD14-TUMOR_peak_14042 chr22 37127081 37127128 + 7.68634 NA Intergenic AluYc|SINE|Alu -28414 NM_006078 10369 Hs.146766 NM_006078 CACNG2 MRD10 calcium channel, voltage-dependent, gamma subunit 2 protein-coding 16-PTNLD14-TUMOR_peak_17720 chr5 143389724 143389771 + 7.68634 NA Intergenic AluSg|SINE|Alu 160531 NM_030799 81555 Hs.372050 NM_030799 HPRD:18071 YIPF5 FinGER5|SB140|SMAP-5|SMAP5|YIP1A Yip1 domain family, member 5 protein-coding 16-PTNLD14-TUMOR_peak_23234 chrX 56667015 56667065 + 7.68634 NA Intergenic L1PA3|LINE|L1 77014 NM_013444 29978 Hs.179309 NM_013444 HPRD:02224 UBQLN2 ALS15|CHAP1|DSK2|N4BP4|PLIC2 ubiquilin 2 protein-coding 16-PTNLD14-TUMOR_peak_3383 chr10 126381008 126381126 + 7.68634 NA intron (NM_014661, intron 3 of 4) AluSx1|SINE|Alu -11530 NR_120631 101927944 Hs.437448 NR_120630 FAM53B-AS1 - FAM53B antisense RNA 1 ncRNA 16-PTNLD14-TUMOR_peak_11600 chr2 78398303 78398350 + 7.68634 NA intron (NR_110288, intron 1 of 3) L1PA3|LINE|L1 82470 NR_110287 101927948 Hs.639404 NR_110287 ENSG00000229494 LOC101927948 - uncharacterized LOC101927948 ncRNA 16-PTNLD14-TUMOR_peak_8393 chr17 5618647 5618694 + 7.68634 NA Intergenic AluSq2|SINE|Alu -56884 NR_040000 339166 Hs.736088 NR_040000 ENSG00000179314 LOC339166 - uncharacterized LOC339166 ncRNA 16-PTNLD14-TUMOR_peak_4315 chr11 68798457 68798505 + 7.68634 NA Intergenic AluSp|SINE|Alu -17631 NM_001098515 116535 Hs.118513 NM_145015 ENSG00000172935 MRGPRF GPR140|GPR168|MRGF|RTA MAS-related GPR, member F protein-coding 16-PTNLD14-TUMOR_peak_18819 chr6 87216830 87216912 + 7.68634 NA Intergenic AluYa5|SINE|Alu -430153 NM_000865 3354 Hs.1611 NM_000865 HPRD:01635 HTR1E 5-HT1E 5-hydroxytryptamine (serotonin) receptor 1E, G protein-coupled protein-coding 16-PTNLD14-TUMOR_peak_12590 chr2 214397415 214397462 + 7.68634 NA intron (NR_047659, intron 12 of 17) AluSx3|SINE|Alu 248335 NR_047659 79582 Hs.743365 NM_024532 HPRD:18089 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 16-PTNLD14-TUMOR_peak_4592 chr11 107065697 107065744 + 7.68634 NA Intergenic L1PA5|LINE|L1 -176549 NM_001256424 2977 Hs.24321 NM_000855 HPRD:03146 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1, soluble, alpha 2 protein-coding 16-PTNLD14-TUMOR_peak_6041 chr13 55565194 55565381 + 7.68634 NA Intergenic AluYa5|SINE|Alu -183302 NR_049804 100846996 NR_049804 miRBase:MI0017874 MIR5007 - microRNA 5007 ncRNA 16-PTNLD14-TUMOR_peak_6162 chr13 102079019 102079106 + 7.68634 NA Intergenic AluY|SINE|Alu -10249 NM_052867 259232 Hs.525146 NM_052867 HPRD:15647 NALCN CanIon|INNFD|VGCNL1|bA430M15.1 sodium leak channel, non-selective protein-coding 16-PTNLD14-TUMOR_peak_23635 chrX 125504713 125504769 + 7.68634 NA Intergenic AluY|SINE|Alu 182101 NM_178470 139170 Hs.120403 NM_178470 HPRD:06604 DCAF12L1 KIAA1892L|WDR40B DDB1 and CUL4 associated factor 12-like 1 protein-coding 16-PTNLD14-TUMOR_peak_1013 chr1 96639552 96639599 + 7.68634 NA Intergenic L1PA3|LINE|L1 200106 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LOC101928241 - uncharacterized LOC101928241 ncRNA 16-PTNLD14-TUMOR_peak_7207 chr15 90041272 90041320 + 7.68634 NA Intergenic AluJb|SINE|Alu -1452 NR_110261 51458 Hs.459284 NM_016321 HPRD:16102 RHCG C15orf6|PDRC2|RHGK|SLC42A3 Rh family, C glycoprotein protein-coding 16-PTNLD14-TUMOR_peak_22308 chr9 106479404 106479451 + 7.68634 NA Intergenic L1PA3|LINE|L1 -282563 NR_109803 101928523 NR_109803 LOC101928523 - uncharacterized LOC101928523 ncRNA 16-PTNLD14-TUMOR_peak_919 chr1 85314950 85314997 + 7.68634 NA intron (NM_012152, intron 2 of 2) AluSc|SINE|Alu 43923 NM_012152 23566 Hs.674915 NM_012152 HPRD:05486 LPAR3 EDG7|Edg-7|GPCR|HOFNH30|LP-A3|LPA3|RP4-678I3 lysophosphatidic acid receptor 3 protein-coding 16-PTNLD14-TUMOR_peak_18890 chr6 97050436 97050483 + 7.68634 NA intron (NM_020482, intron 2 of 6) AluYc|SINE|Alu 40035 NM_001170807 9457 Hs.632608 NM_020482 HPRD:05497 FHL5 ACT|dJ393D12.2 four and a half LIM domains 5 protein-coding 16-PTNLD14-TUMOR_peak_4379 chr11 72280798 72280845 + 7.68634 NA Intergenic AluY|SINE|Alu 45353 NR_029603 406931 NR_029603 MIR139 MIR139-3p|MIRN139 microRNA 139 ncRNA 16-PTNLD14-TUMOR_peak_22302 chr9 103808827 103808874 + 7.68634 NA intron (NM_207299, intron 1 of 7) AluY|SINE|Alu 17819 NM_207299 54886 Hs.382683 NM_017753 HPRD:17906 LPPR1 PRG-3 lipid phosphate phosphatase-related protein type 1 protein-coding 16-PTNLD14-TUMOR_peak_16894 chr5 27716156 27716203 + 7.68634 NA Intergenic AluY|SINE|Alu 243780 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 LINC01021 - long intergenic non-protein coding RNA 1021 ncRNA 16-PTNLD14-TUMOR_peak_5276 chr12 50606802 50606849 + 7.68634 NA intron (NM_001113546, intron 4 of 10) AluSz6|SINE|Alu 9663 NM_001113547 51474 Hs.525419 NM_016357 HPRD:09755 LIMA1 EPLIN|SREBP3 LIM domain and actin binding 1 protein-coding 16-PTNLD14-TUMOR_peak_24036 chrY 16336339 16336386 + 7.68634 NA Intergenic L1PA3|LINE|L1 168260 NM_181880 353513 Hs.170076 NM_181880 HPRD:18602 VCY1B BPY1B variable charge, Y-linked 1B protein-coding 16-PTNLD14-TUMOR_peak_23486 chrX 84610349 84610396 + 7.68634 NA intron (NM_024921, intron 4 of 16) L1PA5|LINE|L1 24376 NM_024921 79983 Hs.267038 NM_024921 HPRD:06679 POF1B POF|POF2B premature ovarian failure, 1B protein-coding 16-PTNLD14-TUMOR_peak_22618 chr9 137963692 137963739 + 7.68634 NA Intergenic AluY|SINE|Alu -3374 NM_014279 10439 Hs.522484 NM_006334 HPRD:09249 OLFM1 AMY|NOE1|NOELIN1|OlfA olfactomedin 1 protein-coding 16-PTNLD14-TUMOR_peak_22241 chr9 98860461 98860514 + 7.68634 NA intron (NR_033838, intron 5 of 8) AluY|SINE|Alu 18206 NM_001256408 158434 Hs.381771 NM_001256408 LOC158434 - uncharacterized LOC158434 protein-coding 16-PTNLD14-TUMOR_peak_12191 chr2 155168548 155168595 + 7.68634 NA intron (NM_052917, intron 9 of 12) MER11C|LTR|ERVK 145379 NM_001256368 100144595 Hs.683952 NM_001256368 LOC100144595 - uncharacterized LOC100144595 protein-coding 16-PTNLD14-TUMOR_peak_11180 chr2 18688948 18688998 + 7.68634 NA Intergenic AluY|SINE|Alu 52986 NM_020905 57665 Hs.120319 NM_020905 HPRD:10190 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 (all-trans/9-cis/11-cis) protein-coding 16-PTNLD14-TUMOR_peak_23359 chrX 68931163 68931210 + 7.68634 NA intron (NM_001005613, intron 2 of 2) L1P1|LINE|L1 95275 NM_001005609 1896 Hs.105407 NM_001399 HPRD:02347 EDA ECTD1|ED1|ED1-A1|ED1-A2|EDA-A1|EDA-A2|EDA1|EDA2|HED|HED1|ODT1|STHAGX1|XHED|XLHED ectodysplasin A protein-coding 16-PTNLD14-TUMOR_peak_15634 chr4 1916903 1916950 + 7.68634 NA intron (NM_001042424, intron 3 of 21) AluY|SINE|Alu 14573 NM_133334 7468 Hs.113876 NM_007331 HPRD:04259 WHSC1 MMSET|NSD2|REIIBP|TRX5|WHS Wolf-Hirschhorn syndrome candidate 1 protein-coding 16-PTNLD14-TUMOR_peak_3263 chr10 103794301 103794348 + 7.68634 NA intron (NM_024541, intron 2 of 25) AluY|SINE|Alu 21608 NM_024541 79591 Hs.16004 NM_024541 HPRD:12588 C10orf76 - chromosome 10 open reading frame 76 protein-coding 16-PTNLD14-TUMOR_peak_5874 chr12 132401792 132401899 + 7.68634 NA intron (NM_003565, intron 21 of 27) intron (NM_003565, intron 21 of 27) -11900 NM_001002020 80324 Hs.592004 NM_025215 HPRD:10481 PUS1 MLASA1 pseudouridylate synthase 1 protein-coding 16-PTNLD14-TUMOR_peak_6617 chr14 73669269 73669325 + 7.68634 NA intron (NM_000021, intron 8 of 11) AluY|SINE|Alu -34908 NM_173462 89932 Hs.509909 NM_173462 HPRD:15099 PAPLN - papilin, proteoglycan-like sulfated glycoprotein protein-coding 16-PTNLD14-TUMOR_peak_18724 chr6 65936862 65936909 + 7.68634 NA intron (NM_001292009, intron 12 of 43) AluSp|SINE|Alu -74426 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 16-PTNLD14-TUMOR_peak_23197 chrX 51888515 51888562 + 7.68634 NA Intergenic L1PA4|LINE|L1 -39381 NM_001242362 81557 Hs.522650 NM_030801 HPRD:06631 MAGED4B - melanoma antigen family D, 4B protein-coding 16-PTNLD14-TUMOR_peak_6059 chr13 68139062 68139109 + 7.68634 NA Intergenic L1PA3|LINE|L1 -334617 NM_203487 5101 Hs.654709 NM_020403 HPRD:04661 PCDH9 - protocadherin 9 protein-coding 16-PTNLD14-TUMOR_peak_16974 chr5 42172677 42172724 + 7.68634 NA intron (NR_104635, intron 1 of 3) L1PA4|LINE|L1 2747 NR_104635 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 16-PTNLD14-TUMOR_peak_20702 chr8 14280706 14280753 + 7.68634 NA intron (NM_139167, intron 2 of 7) L1PA3|LINE|L1 430290 NR_029875 494332 NR_029875 MIR383 MIRN383|hsa-mir-383 microRNA 383 ncRNA 16-PTNLD14-TUMOR_peak_22587 chr9 133481099 133481146 + 7.68634 NA intron (NM_003934, intron 2 of 18) AluSx|SINE|Alu -20562 NR_106915 102465515 NR_106915 MIR6856 hsa-mir-6856 microRNA 6856 ncRNA 16-PTNLD14-TUMOR_peak_6042 chr13 55637751 55637858 + 7.68634 NA Intergenic AluYa5|SINE|Alu -110785 NR_049804 100846996 NR_049804 miRBase:MI0017874 MIR5007 - microRNA 5007 ncRNA 16-PTNLD14-TUMOR_peak_906 chr1 84202686 84202733 + 7.68634 NA intron (NR_119375, intron 2 of 2) AluSx|SINE|Alu 123520 NR_119374 101927560 Hs.559661 NR_119374 ENSG00000233008 LOC101927560 - uncharacterized LOC101927560 ncRNA 16-PTNLD14-TUMOR_peak_16488 chr4 147277138 147277186 + 7.68634 NA intron (NM_001029998, intron 5 of 11) L1PA2|LINE|L1 -52573 NR_107003 102465837 NR_107003 MIR7849 hsa-mir-7849 microRNA 7849 ncRNA 16-PTNLD14-TUMOR_peak_5582 chr12 96044502 96044557 + 7.68634 NA intron (NR_077225, intron 1 of 4) AluY|SINE|Alu 1498 NR_077225 100132594 Hs.676211 NR_077225 ENSG00000257150 PGAM1P5 - phosphoglycerate mutase 1 pseudogene 5 pseudo 16-PTNLD14-TUMOR_peak_12405 chr2 193714443 193714492 + 7.68634 NA Intergenic L1PA2|LINE|L1 99896 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1, prostate-specific transcript (non-protein coding) ncRNA 16-PTNLD14-TUMOR_peak_3446 chr10 131353694 131353741 + 7.68634 NA intron (NM_002412, intron 2 of 4) AluJr|SINE|Alu 88263 NM_002412 4255 Hs.501522 NM_002412 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 16-PTNLD14-TUMOR_peak_5056 chr12 22458558 22458605 + 7.68634 NA intron (NM_003034, intron 1 of 4) AluSx1|SINE|Alu 29067 NM_003034 6489 Hs.408614 NM_003034 HPRD:03078 ST8SIA1 GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 protein-coding 16-PTNLD14-TUMOR_peak_23550 chrX 102066406 102066459 + 7.68634 NA intron (NR_038988, intron 2 of 7) L1PA2|LINE|L1 42337 NR_038988 100287765 Hs.687084 NR_038988 ENSG00000223546 LINC00630 LL0XNC01-157D4.1|LL0XNC01-237H1.2 long intergenic non-protein coding RNA 630 ncRNA 16-PTNLD14-TUMOR_peak_17507 chr5 120577118 120577165 + 7.68634 NA Intergenic AluY|SINE|Alu -81104 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 16-PTNLD14-TUMOR_peak_9024 chr17 61247523 61247570 + 7.68623 NA intron (NM_025185, intron 3 of 24) AluY|SINE|Alu 160648 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 16-PTNLD14-TUMOR_peak_17320 chr5 83199721 83199892 + 7.67775 NA Intergenic L1PA3|LINE|L1 -182910 NM_001884 1404 Hs.2799 NM_001884 HPRD:00275 HAPLN1 CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 16-PTNLD14-TUMOR_peak_19688 chr7 61992516 61992569 + 7.66390 NA Intergenic ALR/Alpha|Satellite|centr 771892 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 16-PTNLD14-TUMOR_peak_14385 chr3 30096725 30096775 + 7.66093 NA Intergenic L1PA4|LINE|L1 -121103 NR_046556 100873977 Hs.581453 NR_046556 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 16-PTNLD14-TUMOR_peak_21917 chr9 43357333 43357396 + 7.66093 NA Intergenic AluYa5|SINE|Alu -211880 NR_027472 642929 Hs.584288 NR_027472 LOC642929 - general transcription factor II, i pseudogene pseudo 16-PTNLD14-TUMOR_peak_17438 chr5 106108029 106108094 + 7.66093 NA Intergenic L1PA4|LINE|L1 238654 NR_104671 102467213 Hs.570923 NR_104671 LOC102467213 - uncharacterized LOC102467213 ncRNA 16-PTNLD14-TUMOR_peak_2524 chr10 17153811 17153900 + 7.64609 NA intron (NM_001081, intron 8 of 66) AluSx|SINE|Alu 17961 NM_001081 8029 Hs.166206 NM_001081 HPRD:04296 CUBN IFCR|MGA1|gp280 cubilin (intrinsic factor-cobalamin receptor) protein-coding 16-PTNLD14-TUMOR_peak_19078 chr6 148788798 148788920 + 7.64462 NA intron (NM_015278, intron 4 of 19) AluSx|SINE|Alu 125130 NM_015278 23328 Hs.193133 NM_015278 HPRD:06408 SASH1 SH3D6A|dJ323M4|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 16-PTNLD14-TUMOR_peak_14750 chr3 88705455 88705527 + 7.64462 NA Intergenic L1PA3|LINE|L1 -451183 NM_005233 2042 Hs.123642 NM_005233 HPRD:01555 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 16-PTNLD14-TUMOR_peak_17939 chr5 174074159 174074206 + 7.64462 NA Intergenic AluSx|SINE|Alu -77393 NM_002449 4488 Hs.89404 NM_002449 HPRD:00421 MSX2 CRS2|FPP|HOX8|MSH|PFM|PFM1 msh homeobox 2 protein-coding 16-PTNLD14-TUMOR_peak_4796 chr11 134065004 134065051 + 7.64462 NA intron (NM_015261, intron 13 of 34) AluJr|SINE|Alu 29399 NM_015261 23310 Hs.438550 NM_015261 HPRD:11062 NCAPD3 CAP-D3|CAPD3|hCAP-D3|hHCP-6|hcp-6 non-SMC condensin II complex, subunit D3 protein-coding 16-PTNLD14-TUMOR_peak_18027 chr5 180427712 180427765 + 7.64462 NA intron (NM_197975, intron 3 of 7) AluYb8|SINE|Alu 11893 NM_197975 10917 Hs.225949 NM_006707 HPRD:08393 BTNL3 BTN9.1|BTNLR butyrophilin-like 3 protein-coding 16-PTNLD14-TUMOR_peak_14749 chr3 88705173 88705228 + 7.64462 NA Intergenic L1PA3|LINE|L1 -451474 NM_005233 2042 Hs.123642 NM_005233 HPRD:01555 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 16-PTNLD14-TUMOR_peak_2759 chr10 39116550 39116601 + 7.63368 NA Intergenic (GAATG)n|Satellite|Satellite 126848 NR_045000 399746 Hs.742607 NR_045000 ENSG00000227264 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 16-PTNLD14-TUMOR_peak_19038 chr6 148640209 148640304 + 7.61494 NA Intergenic AluY|SINE|Alu -23473 NM_015278 23328 Hs.193133 NM_015278 HPRD:06408 SASH1 SH3D6A|dJ323M4|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 16-PTNLD14-TUMOR_peak_21930 chr9 44516246 44516309 + 7.61494 NA Intergenic AluYa5|SINE|Alu 131692 NR_121564 101927827 Hs.738704 NR_121564 ENSG00000229311 LOC101927827 - uncharacterized LOC101927827 ncRNA 16-PTNLD14-TUMOR_peak_22752 chr9_gl000200_random 64242 64305 + 7.61494 NA NA AluYa5|SINE|Alu NA NA 16-PTNLD14-TUMOR_peak_10285 chr19 24617207 24617273 + 7.58866 NA Intergenic ALR/Alpha|Satellite|centr -270991 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 16-PTNLD14-TUMOR_peak_3215 chr10 96923490 96923537 + 7.58556 NA Intergenic L1PA4|LINE|L1 -30444 NM_207321 142827 Hs.134229 NM_207321 HPRD:12565 ACSM6 C10orf129|bA310E22.3 acyl-CoA synthetase medium-chain family member 6 protein-coding 16-PTNLD14-TUMOR_peak_24032 chrY 16068541 16068588 + 7.58556 NA Intergenic L1PA2|LINE|L1 29824 NM_181880 353513 Hs.170076 NM_181880 HPRD:18602 VCY1B BPY1B variable charge, Y-linked 1B protein-coding 16-PTNLD14-TUMOR_peak_11887 chr2 105261498 105261549 + 7.58556 NA Intergenic L1PA4|LINE|L1 112654 NR_038231 284998 Hs.410180 NR_038231 ENSG00000234177 LINC01114 PANCAT long intergenic non-protein coding RNA 1114 ncRNA 16-PTNLD14-TUMOR_peak_19923 chr7 86201550 86201597 + 7.58556 NA Intergenic L1PA7|LINE|L1 -71657 NM_000840 2913 Hs.590575 NM_000840 HPRD:03070 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate receptor, metabotropic 3 protein-coding 16-PTNLD14-TUMOR_peak_12973 chr20 26313023 26313079 + 7.58543 NA Intergenic ALR/Alpha|Satellite|centr -123182 NR_040095 284801 Hs.370699 NR_040095 ENSG00000227195 MIR663AHG - MIR663A host gene (non-protein coding) ncRNA 16-PTNLD14-TUMOR_peak_13673 chr21 44212839 44212888 + 7.58543 NA Intergenic AluSg|SINE|Alu 86522 NM_001260477 10785 Hs.248815 NM_018669 HPRD:09330 WDR4 TRM82|TRMT82 WD repeat domain 4 protein-coding 16-PTNLD14-TUMOR_peak_19192 chr6 169580981 169581029 + 7.57110 NA Intergenic L1PA6|LINE|L1 73204 NM_003247 7058 Hs.371147 NM_003247 HPRD:01766 THBS2 TSP2 thrombospondin 2 protein-coding 16-PTNLD14-TUMOR_peak_22461 chr9 127099026 127099129 + 7.57110 NA intron (NM_001166171, intron 8 of 10) AluSx|SINE|Alu -16675 NR_027406 100129034 Hs.654980 NR_027406 LOC100129034 - uncharacterized LOC100129034 ncRNA 16-PTNLD14-TUMOR_peak_23412 chrX 71901854 71901973 + 7.57110 NA intron (NM_001172436, intron 5 of 29) SVA_F|Other|Other -6886 NR_110391 101928259 Hs.666679 NR_110391 ENSG00000231944 LOC101928259 - uncharacterized LOC101928259 ncRNA 16-PTNLD14-TUMOR_peak_8195 chr16 81119757 81119816 + 7.57110 NA intron (NR_033249, intron 2 of 3) AluYb8|SINE|Alu -8914 NM_152337 123775 Hs.658684 NM_152337 HPRD:08730 C16orf46 - chromosome 16 open reading frame 46 protein-coding 16-PTNLD14-TUMOR_peak_2757 chr10 39111976 39112024 + 7.53020 NA Intergenic (CATTC)n|Satellite|Satellite 122273 NR_045000 399746 Hs.742607 NR_045000 ENSG00000227264 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 16-PTNLD14-TUMOR_peak_17534 chr5 126339090 126339137 + 7.52819 NA intron (NM_178450, intron 1 of 4) AluYc3|SINE|Alu 27387 NM_178450 115123 Hs.132441 NM_178450 HPRD:14362 MARCH3 MARCH-III|RNF173 membrane-associated ring finger (C3HC4) 3, E3 ubiquitin protein ligase protein-coding 16-PTNLD14-TUMOR_peak_15467 chr3 189569308 189569355 + 7.52819 NA intron (NM_003722, intron 4 of 13) AluSx1|SINE|Alu 21620 NR_030642 100126340 NR_030642 MIR944 MIRN944|hsa-mir-944 microRNA 944 ncRNA 16-PTNLD14-TUMOR_peak_22285 chr9 101750945 101750993 + 7.52819 NA intron (NM_001855, intron 4 of 41) AluSz|SINE|Alu 44974 NM_001855 1306 Hs.409034 NM_001855 HPRD:00380 COL15A1 - collagen, type XV, alpha 1 protein-coding 16-PTNLD14-TUMOR_peak_19168 chr6 164014803 164014858 + 7.52597 NA Intergenic AluY|SINE|Alu 179155 NM_001301085 9444 Hs.510324 NM_006775 HPRD:06691 QKI Hqk|QK|QK1|QK3|hqkI QKI, KH domain containing, RNA binding protein-coding 16-PTNLD14-TUMOR_peak_5578 chr12 95344092 95344307 + 7.52597 NA Intergenic AluYa5|SINE|Alu 53290 NM_018838 55967 Hs.506374 NM_018838 HPRD:16781 NDUFA12 B17.2|DAP13 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12 protein-coding 16-PTNLD14-TUMOR_peak_1050 chr1 103001015 103001074 + 7.52512 NA Intergenic AluSc|SINE|Alu -538254 NR_110211 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 16-PTNLD14-TUMOR_peak_23290 chrX 61815914 61815965 + 7.50926 NA Intergenic ALR/Alpha|Satellite|centr 755279 NM_001012968 139886 Hs.612782 NM_001012968 HPRD:12556 SPIN4 - spindlin family, member 4 protein-coding 16-PTNLD14-TUMOR_peak_23823 chrY 7345111 7345158 + 7.50283 NA Intergenic L1PA5|LINE|L1 203121 NR_028062 5616 Hs.584730 NM_002760 HPRD:08949 PRKY PRKXP3|PRKYP protein kinase, Y-linked, pseudogene pseudo 16-PTNLD14-TUMOR_peak_15671 chr4 4041395 4041509 + 7.50283 NA Intergenic AluYb9|SINE|Alu -84304 NR_024253 348926 Hs.591720 NR_024253 FAM86EP - family with sequence similarity 86, member A pseudogene pseudo 16-PTNLD14-TUMOR_peak_12353 chr2 182665346 182665399 + 7.48141 NA Intergenic L1PA6|LINE|L1 -91071 NM_001287504 6744 Hs.196983 NM_006751 HPRD:00353 SSFA2 CS-1|CS1|KRAP|SPAG13 sperm specific antigen 2 protein-coding 16-PTNLD14-TUMOR_peak_5274 chr12 50549420 50549509 + 7.47198 NA intron (NM_001281731, intron 1 of 10) AluY|SINE|Alu 11852 NM_147190 91012 Hs.270525 NM_147190 HPRD:13963 CERS5 LASS5|Trh4 ceramide synthase 5 protein-coding 16-PTNLD14-TUMOR_peak_17541 chr5 126878749 126878798 + 7.47198 NA intron (NM_001286808, intron 7 of 9) L1P1|LINE|L1 25472 NM_001286808 133619 Hs.483259 NM_130809 HPRD:14052 PRRC1 - proline-rich coiled-coil 1 protein-coding 16-PTNLD14-TUMOR_peak_23946 chrY 13680131 13680186 + 7.46710 NA Intergenic (GAATG)n|Satellite|Satellite 853231 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 16-PTNLD14-TUMOR_peak_15881 chr4 49100218 49100266 + 7.46696 NA Intergenic (CATTC)n|Satellite|Satellite 111583 NM_001286791 80157 Hs.479703 NM_025087 HPRD:08638 CWH43 CWH43-C cell wall biogenesis 43 C-terminal homolog (S. cerevisiae) protein-coding 16-PTNLD14-TUMOR_peak_15176 chr3 148844409 148844457 + 7.46696 NA Intergenic AluYa5|SINE|Alu -2938 NM_032383 84343 Hs.558314 NM_032383 HPRD:05835 HPS3 SUTAL Hermansky-Pudlak syndrome 3 protein-coding 16-PTNLD14-TUMOR_peak_1502 chr1 152211201 152211248 + 7.43738 NA Intergenic L1MC4|LINE|L1 -14552 NM_001009931 388697 Hs.490162 NM_001009931 HPRD:17114 HRNR FLG3|S100A16|S100a18 hornerin protein-coding 16-PTNLD14-TUMOR_peak_10466 chr19 37571881 37571933 + 7.43738 NA intron (NM_144689, intron 2 of 4) AluY|SINE|Alu 2525 NM_144689 147923 Hs.444992 NM_144689 HPRD:08122 ZNF420 APAK zinc finger protein 420 protein-coding 16-PTNLD14-TUMOR_peak_11455 chr2 60266071 60266131 + 7.43738 NA Intergenic L1PA4|LINE|L1 348479 NR_039631 100616473 NR_039631 miRBase:MI0016772 MIR4432 - microRNA 4432 ncRNA 16-PTNLD14-TUMOR_peak_15595 chr4 460958 461005 + 7.43145 NA intron (NM_133474, intron 2 of 2) AluY|SINE|Alu 7017 NR_002451 79963 Hs.745030 NM_024903 ABCA11P ABCA11|EST1133530 ATP-binding cassette, sub-family A (ABC1), member 11, pseudogene pseudo 16-PTNLD14-TUMOR_peak_17282 chr5 78560933 78560980 + 7.41625 NA intron (NM_152405, intron 1 of 10) AluY|SINE|Alu 29031 NM_152405 133746 Hs.482605 NM_152405 HPRD:05045 JMY WHDC1L3 junction mediating and regulatory protein, p53 cofactor protein-coding 16-PTNLD14-TUMOR_peak_23556 chrX 103129188 103129263 + 7.41625 NA Intergenic L1PA4|LINE|L1 -42013 NM_016370 51209 Hs.522736 NM_016370 HPRD:02237 RAB9B RAB9L|Rab-9L RAB9B, member RAS oncogene family protein-coding 16-PTNLD14-TUMOR_peak_5404 chr12 58516697 58516744 + 7.41625 NA Intergenic AluSc|SINE|Alu 181275 NM_033276 91419 Hs.61188 NM_033276 HPRD:17256 XRCC6BP1 KUB3 XRCC6 binding protein 1 protein-coding 16-PTNLD14-TUMOR_peak_20755 chr8 23551482 23551529 + 7.41625 NA Intergenic AluSp|SINE|Alu -11055 NM_006167 4824 Hs.55999 NM_006167 HPRD:03620 NKX3-1 BAPX2|NKX3|NKX3.1|NKX3A NK3 homeobox 1 protein-coding 16-PTNLD14-TUMOR_peak_3630 chr11 7566374 7566421 + 7.41625 NA intron (NM_003621, intron 1 of 23) AluSz6|SINE|Alu 31401 NM_003621 8495 Hs.655714 NM_003621 HPRD:04391 PPFIBP2 Cclp1 PTPRF interacting protein, binding protein 2 (liprin beta 2) protein-coding 16-PTNLD14-TUMOR_peak_5509 chr12 72318578 72318765 + 7.41625 NA non-coding (NR_027449, exon 16 of 16) non-coding (NR_027449, exon 16 of 16) -13955 NM_173353 121278 Hs.736576 NM_173353 HPRD:09594 TPH2 ADHD7|NTPH tryptophan hydroxylase 2 protein-coding 16-PTNLD14-TUMOR_peak_15808 chr4 21240033 21240080 + 7.41625 NA intron (NM_147182, intron 2 of 8) L1PA4|LINE|L1 65473 NM_147183 80333 Hs.655705 NM_025221 HPRD:12184 KCNIP4 CALP|KCHIP4 Kv channel interacting protein 4 protein-coding 16-PTNLD14-TUMOR_peak_3811 chr11 29420900 29420947 + 7.41625 NA Intergenic L1PA4|LINE|L1 617654 NM_002233 3739 Hs.592002 NM_002233 HPRD:01444 KCNA4 HBK4|HK1|HPCN2|HUKII|KCNA4L|KCNA8|KV1.4|PCN2 potassium voltage-gated channel, shaker-related subfamily, member 4 protein-coding 16-PTNLD14-TUMOR_peak_19988 chr7 97825447 97825499 + 7.41625 NA intron (NM_014916, intron 11 of 13) AluSx|SINE|Alu -16093 NM_177455 168620 Hs.674510 NM_177455 HPRD:16356 BHLHA15 BHLHB8|MIST1 basic helix-loop-helix family, member a15 protein-coding 16-PTNLD14-TUMOR_peak_20939 chr8 46840579 46840641 + 7.40132 NA Intergenic ALR/Alpha|Satellite|centr -911898 NR_027012 497634 Hs.406982 NR_027012 ENSG00000253314 LINC00293 BEYLA|NCRNA00293 long intergenic non-protein coding RNA 293 ncRNA 16-PTNLD14-TUMOR_peak_11592 chr2 77133892 77133939 + 7.36098 NA intron (NM_001134745, intron 3 of 3) L1PA3|LINE|L1 -79176 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 16-PTNLD14-TUMOR_peak_3270 chr10 104147467 104147514 + 7.36098 NA Intergenic AluSc8|SINE|Alu -6377 NM_001288724 4791 Hs.73090 NM_002502 HPRD:01239 NFKB2 CVID10|H2TF1|LYT-10|LYT10|NF-kB2|p105|p52 nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100) protein-coding 16-PTNLD14-TUMOR_peak_7252 chr15 99424621 99424670 + 7.36098 NA intron (NM_001291858, intron 2 of 20) AluSx1|SINE|Alu 96990 NR_039864 100616432 NR_039864 MIR4714 - microRNA 4714 ncRNA 16-PTNLD14-TUMOR_peak_6400 chr14 40098991 40099038 + 7.36098 NA Intergenic L1HS|LINE|L1 -197310 NM_203301 254170 Hs.146632 NM_203301 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 16-PTNLD14-TUMOR_peak_9325 chr18 2596499 2596546 + 7.36098 NA intron (NM_006101, intron 11 of 16) L1PA3|LINE|L1 25012 NM_006101 10403 Hs.414407 NM_006101 HPRD:06277 NDC80 HEC|HEC1|HsHec1|KNTC2|TID3|hsNDC80 NDC80 kinetochore complex component protein-coding 16-PTNLD14-TUMOR_peak_23651 chrX 127824571 127824635 + 7.36098 NA Intergenic L1PA3|LINE|L1 -638221 NM_138289 139741 Hs.680125 NM_138289 HPRD:06439 ACTRT1 AIP1|ARIP1|ARPT1|HSD27 actin-related protein T1 protein-coding 16-PTNLD14-TUMOR_peak_4752 chr11 129149236 129149527 + 7.35103 NA Intergenic CpG -87288 NM_001142685 9743 Hs.440379 NM_014715 HPRD:12257 ARHGAP32 GC-GAP|GRIT|PX-RICS|RICS|p200RhoGAP|p250GAP Rho GTPase activating protein 32 protein-coding 16-PTNLD14-TUMOR_peak_8417 chr17 6377067 6377114 + 7.34587 NA intron (NM_031220, intron 10 of 19) AluSx1|SINE|Alu 29355 NM_019013 54478 Hs.592116 NM_019013 HPRD:07649 FAM64A CATS|RCS1 family with sequence similarity 64, member A protein-coding 16-PTNLD14-TUMOR_peak_17437 chr5 106054819 106054873 + 7.30829 NA Intergenic L1PA2|LINE|L1 291869 NR_104671 102467213 Hs.570923 NR_104671 LOC102467213 - uncharacterized LOC102467213 ncRNA 16-PTNLD14-TUMOR_peak_18197 chr6 16009373 16009420 + 7.30829 NA Intergenic L1PA3|LINE|L1 -119921 NM_013262 29116 Hs.484738 NM_013262 HPRD:17621 MYLIP IDOL|MIR myosin regulatory light chain interacting protein protein-coding 16-PTNLD14-TUMOR_peak_21683 chr9 9936517 9936572 + 7.30829 NA intron (NM_002839, intron 5 of 45) L1PA3|LINE|L1 676179 NM_002839 5789 Hs.446083 NM_002839 HPRD:03358 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase, receptor type, D protein-coding 16-PTNLD14-TUMOR_peak_12490 chr2 204693426 204693473 + 7.30754 NA Intergenic AluSz|SINE|Alu -39062 NM_001037631 1493 Hs.247824 NM_005214 HPRD:00474 CTLA4 CD|CD152|CELIAC3|CTLA-4|GRD4|GSE|IDDM12 cytotoxic T-lymphocyte-associated protein 4 protein-coding 16-PTNLD14-TUMOR_peak_16933 chr5 35512340 35512424 + 7.30754 NA Intergenic L1PA4|LINE|L1 -105607 NM_144722 79925 Hs.298863 NM_024867 HPRD:11181 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 16-PTNLD14-TUMOR_peak_20510 chr7 155782943 155783075 + 7.29106 NA Intergenic Intergenic 27683 NM_001291913 389602 Hs.583071 NM_001291913 LOC389602 - uncharacterized LOC389602 protein-coding 16-PTNLD14-TUMOR_peak_18127 chr6 7945285 7945332 + 7.28760 NA intron (NR_037616, intron 4 of 12) L1PA4|LINE|L1 -34261 NM_030810 81567 Hs.150837 NM_022085 HPRD:18249 TXNDC5 ENDOPDI|ERP46|HCC-2|PDIA15|STRF8|UNQ364 thioredoxin domain containing 5 (endoplasmic reticulum) protein-coding 16-PTNLD14-TUMOR_peak_2526 chr10 17157170 17157228 + 7.28760 NA intron (NM_001081, intron 7 of 66) AluSz6|SINE|Alu 14617 NM_001081 8029 Hs.166206 NM_001081 HPRD:04296 CUBN IFCR|MGA1|gp280 cubilin (intrinsic factor-cobalamin receptor) protein-coding 16-PTNLD14-TUMOR_peak_16288 chr4 111328520 111328567 + 7.26584 NA Intergenic L1PA2|LINE|L1 -68686 NM_001977 2028 Hs.435765 NM_001977 ENPEP APA|CD249|gp160 glutamyl aminopeptidase (aminopeptidase A) protein-coding 16-PTNLD14-TUMOR_peak_20179 chr7 126243474 126243589 + 7.26584 NA intron (NR_028041, intron 8 of 10) L1PA2|LINE|L1 454707 NR_030323 693177 NR_030323 MIR592 MIRN592|hsa-mir-592 microRNA 592 ncRNA 16-PTNLD14-TUMOR_peak_7106 chr15 73800843 73800913 + 7.26584 NA intron (NM_001042367, intron 2 of 5) L1PA2|LINE|L1 61006 NR_103844 101241892 Hs.656678 NR_103844 NPTN-IT1 lncRNA-LET NPTN intronic transcript 1 (non-protein coding) ncRNA 16-PTNLD14-TUMOR_peak_2494 chr10 14281556 14281604 + 7.26584 NA intron (NM_018027, intron 2 of 24) AluY|SINE|Alu 91286 NM_018027 55691 Hs.330463 NM_018027 HPRD:13553 FRMD4A FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 16-PTNLD14-TUMOR_peak_9611 chr18 59367855 59367926 + 7.25427 NA Intergenic L1PA4|LINE|L1 -47519 NR_103449 100996669 Hs.586981 NR_103449 ENSG00000260440 LOC100996669 - uncharacterized LOC100996669 ncRNA 16-PTNLD14-TUMOR_peak_14813 chr3 101447313 101447360 + 7.25427 NA intron (NM_024548, intron 3 of 10) AluSq|SINE|Alu 3842 NM_024548 79598 Hs.444135 NM_024548 HPRD:08014 CEP97 2810403B08Rik|LRRIQ2 centrosomal protein 97kDa protein-coding 16-PTNLD14-TUMOR_peak_23984 chrY 13808349 13808396 + 7.23855 NA Intergenic (GAATG)n|Satellite|Satellite 725017 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 16-PTNLD14-TUMOR_peak_11301 chr2 37551886 37551934 + 7.22431 NA Intergenic CpG -7688 NM_005813 23683 Hs.660757 NM_005813 HPRD:06151 PRKD3 EPK2|PKC-NU|PKD3|PRKCN|nPKC-NU protein kinase D3 protein-coding 16-PTNLD14-TUMOR_peak_23496 chrX 86375328 86375403 + 7.22431 NA Intergenic L1PA2|LINE|L1 -397350 NM_019117 56062 Hs.49075 NM_019117 HPRD:02283 KLHL4 DKELCHL|KHL4 kelch-like family member 4 protein-coding 16-PTNLD14-TUMOR_peak_6106 chr13 91691056 91691128 + 7.22431 NA Intergenic L1PA5|LINE|L1 52601 NR_104057 101930747 Hs.112745 NR_104057 LINC00380 - long intergenic non-protein coding RNA 380 ncRNA 16-PTNLD14-TUMOR_peak_5733 chr12 115178162 115178217 + 7.22431 NA Intergenic AluSx3|SINE|Alu -56220 NM_005996 6926 Hs.744016 NM_005996 HPRD:03373 TBX3 TBX3-ISO|UMS|XHL T-box 3 protein-coding 16-PTNLD14-TUMOR_peak_10266 chr19 22877624 22877675 + 7.20129 NA Intergenic SSU-rRNA_Hsa|rRNA|rRNA 60523 NM_020855 57615 Hs.232108 NM_020855 ENSG00000229676 ZNF492 ZNF115 zinc finger protein 492 protein-coding 16-PTNLD14-TUMOR_peak_18050 chr6 1944756 1944803 + 7.20129 NA intron (NM_001500, intron 6 of 10) AluY|SINE|Alu 231446 NM_001253846 2762 Hs.144496 NM_001500 HPRD:11925 GMDS GMD|SDR3E1 GDP-mannose 4,6-dehydratase protein-coding 16-PTNLD14-TUMOR_peak_18852 chr6 90876430 90876477 + 7.20129 NA intron (NM_021813, intron 4 of 8) L1PA4|LINE|L1 130174 NM_021813 60468 Hs.269764 NM_021813 HPRD:12012 BACH2 BTBD25 BTB and CNC homology 1, basic leucine zipper transcription factor 2 protein-coding 16-PTNLD14-TUMOR_peak_7122 chr15 75231195 75231242 + 7.20129 NA promoter-TSS (NM_004255) promoter-TSS (NM_004255) -723 NM_004255 9377 Hs.401903 NM_004255 COX5A COX|COX-VA|VA cytochrome c oxidase subunit Va protein-coding 16-PTNLD14-TUMOR_peak_9929 chr19 10585110 10585171 + 7.18953 NA Intergenic AluYf5|SINE|Alu 21507 NM_006202 5141 Hs.89901 NM_006202 HPRD:02527 PDE4A DPDE2|PDE4|PDE46 phosphodiesterase 4A, cAMP-specific protein-coding 16-PTNLD14-TUMOR_peak_13501 chr21 14732274 14732459 + 7.18432 NA Intergenic TAR1|Satellite|telo 46415 NR_036164 100423018 NR_036164 miRBase:MI0014242 MIR3156-3 - microRNA 3156-3 ncRNA 16-PTNLD14-TUMOR_peak_15749 chr4 9563581 9563637 + 7.18432 NA Intergenic AluSx1|SINE|Alu -5672 NR_031688 100302277 NR_031688 miRBase:MI0006422 MIR548I2 MIR548I-2|MIRN548I2|hsa-mir-548i-2 microRNA 548i-2 ncRNA 16-PTNLD14-TUMOR_peak_5728 chr12 115083969 115084051 + 7.15567 NA Intergenic AluY|SINE|Alu 37959 NM_016569 6926 Hs.744016 NM_005996 HPRD:03373 TBX3 TBX3-ISO|UMS|XHL T-box 3 protein-coding 16-PTNLD14-TUMOR_peak_7582 chr16 19656755 19656805 + 7.14942 NA intron (NM_001300743, intron 21 of 27) AluY|SINE|Alu -70998 NM_153208 124152 Hs.460217 NM_153208 HPRD:11340 IQCK - IQ motif containing K protein-coding 16-PTNLD14-TUMOR_peak_3878 chr11 36381521 36381634 + 7.14942 NA intron (NM_001160167, intron 1 of 8) AluSz6|SINE|Alu -15958 NM_024841 79899 Hs.19987 NM_024841 HPRD:07854 PRR5L PROTOR2 proline rich 5 like protein-coding 16-PTNLD14-TUMOR_peak_13620 chr21 38326677 38326825 + 7.14942 NA intron (NM_001242784, intron 2 of 11) AluY|SINE|Alu 12205 NM_001242784 3141 Hs.371350 NM_000411 HPRD:08360 HLCS HCS holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase) protein-coding 16-PTNLD14-TUMOR_peak_7175 chr15 83174653 83174711 + 7.14942 NA intron (NR_026811, intron 1 of 7).3 AluSx|SINE|Alu 8291 NR_102747 727751 Hs.546614 NR_102747 LOC727751 - golgin A2 pseudogene pseudo 16-PTNLD14-TUMOR_peak_23124 chrX 32424052 32424101 + 7.12307 NA intron (NM_004009, intron 30 of 78) L1PA4|LINE|L1 6295 NM_004012 1756 Hs.495912 NM_000109 HPRD:02303 DMD BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272|MRX85 dystrophin protein-coding 16-PTNLD14-TUMOR_peak_5732 chr12 115177851 115177904 + 7.10274 NA Intergenic AluSz|SINE|Alu -55908 NM_005996 6926 Hs.744016 NM_005996 HPRD:03373 TBX3 TBX3-ISO|UMS|XHL T-box 3 protein-coding 16-PTNLD14-TUMOR_peak_7164 chr15 82790076 82790134 + 7.09932 NA intron (NR_026811, intron 1 of 7) AluSx|SINE|Alu 8294 NR_033936 80154 Hs.454640 NM_025084 GOLGA2P10 - golgin A2 pseudogene 10 pseudo 16-PTNLD14-TUMOR_peak_17092 chr5 51993554 51993621 + 7.09932 NA Intergenic L1PA16|LINE|L1 -90187 NM_015946 53918 Hs.644352 NM_015946 PELO PRO1770 pelota homolog (Drosophila) protein-coding 16-PTNLD14-TUMOR_peak_12349 chr2 181703611 181703664 + 7.09932 NA intron (NR_104320, intron 3 of 3) L1HS|LINE|L1 -141475 NM_182678 10477 Hs.470804 NM_006357 HPRD:05000 UBE2E3 UBCH9|UbcM2 ubiquitin-conjugating enzyme E2E 3 protein-coding 16-PTNLD14-TUMOR_peak_4565 chr11 102052067 102052114 + 7.09932 NA intron (NM_001282098, intron 3 of 6) AluY|SINE|Alu 68919 NM_001195045 10413 Hs.503692 NM_006106 HPRD:09424 YAP1 COB1|YAP|YAP2|YAP65|YKI Yes-associated protein 1 protein-coding 16-PTNLD14-TUMOR_peak_3431 chr10 129050486 129050537 + 7.09932 NA intron (NM_001380, intron 28 of 51) L1PA3|LINE|L1 -56089 NM_001039762 642938 Hs.613882 NM_001039762 ENSG00000188916 FAM196A C10orf141 family with sequence similarity 196, member A protein-coding 16-PTNLD14-TUMOR_peak_21291 chr8 112360159 112360206 + 7.09932 NA Intergenic AluSz|SINE|Alu -111750 NR_125418 101927487 Hs.630004 NR_125418 LOC101927487 - uncharacterized LOC101927487 ncRNA 16-PTNLD14-TUMOR_peak_9018 chr17 61169332 61169386 + 7.09457 NA intron (NM_025185, intron 2 of 24) L1PA5|LINE|L1 82461 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 16-PTNLD14-TUMOR_peak_5727 chr12 115083818 115083881 + 7.05871 NA Intergenic AluY|SINE|Alu 38120 NM_016569 6926 Hs.744016 NM_005996 HPRD:03373 TBX3 TBX3-ISO|UMS|XHL T-box 3 protein-coding 16-PTNLD14-TUMOR_peak_20912 chr8 43805213 43805261 + 7.05385 NA Intergenic ALR/Alpha|Satellite|centr 657652 NM_001005365 340441 Hs.531579 NM_001002920 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family, member A protein-coding 16-PTNLD14-TUMOR_peak_6546 chr14 63817549 63817596 + 7.04974 NA Intergenic AluJr|SINE|Alu -31979 NM_145171 122876 Hs.375028 NM_145171 GPHB5 B5|GPB5|ZLUT1 glycoprotein hormone beta 5 protein-coding 16-PTNLD14-TUMOR_peak_8343 chr17 828709 828756 + 7.04974 NA intron (NM_022463, intron 1 of 7) AluSq2|SINE|Alu 54266 NM_022463 64359 Hs.527989 NM_022463 HPRD:14858 NXN NRX|TRG-4 nucleoredoxin protein-coding 16-PTNLD14-TUMOR_peak_24042 chrY 19175141 19175188 + 7.04974 NA Intergenic L1PA2|LINE|L1 -437674 NR_028083 340618 Hs.434364 NR_028083 FAM41AY1 FAM41AY family with sequence similarity 41, member A, Y-linked 1 ncRNA 16-PTNLD14-TUMOR_peak_5183 chr12 38120757 38120804 + 7.04108 NA Intergenic ALR/Alpha|Satellite|centr -589777 NM_001013620 144245 Hs.259305 NM_001013620 ALG10B ALG10|KCR1 ALG10B, alpha-1,2-glucosyltransferase protein-coding 16-PTNLD14-TUMOR_peak_332 chr1 28147477 28147629 + 7.02521 NA intron (NM_177424, intron 8 of 8) L1PA3|LINE|L1 -9699 NM_014110 5511 Hs.533474 NM_002713 HPRD:04028 PPP1R8 ARD-1|ARD1|NIPP-1|NIPP1|PRO2047 protein phosphatase 1, regulatory subunit 8 protein-coding 16-PTNLD14-TUMOR_peak_15532 chr3 196049735 196049800 + 7.02521 NA TTS (NM_001204898) TTS (NM_001204898) 4564 NR_046724 100874214 Hs.672105 NR_046724 TM4SF19-AS1 - TM4SF19 antisense RNA 1 ncRNA 16-PTNLD14-TUMOR_peak_2226 chr1 230982634 230982689 + 7.02521 NA intron (NM_032800, intron 2 of 3) AluYa5|SINE|Alu 9121 NM_001136495 84886 Hs.520494 NM_032800 HPRD:13359 C1orf198 - chromosome 1 open reading frame 198 protein-coding 16-PTNLD14-TUMOR_peak_251 chr1 19297895 19297942 + 7.02521 NA Intergenic AluSx|SINE|Alu -15092 NM_001136265 126917 Hs.466625 NM_001136265 ENSG00000169991 IFFO2 - intermediate filament family orphan 2 protein-coding 16-PTNLD14-TUMOR_peak_14707 chr3 75546309 75546363 + 7.02521 NA Intergenic AluSg|SINE|Alu -62070 NR_024241 692099 Hs.591652 NR_024241 ENSG00000244026 FAM86DP FAM86D family with sequence similarity 86, member D, pseudogene pseudo 16-PTNLD14-TUMOR_peak_777 chr1 55326422 55326491 + 7.02521 NA intron (NM_014762, intron 6 of 8) AluY|SINE|Alu 26465 NM_014762 1718 Hs.498727 NM_014762 HPRD:05916 DHCR24 DCE|Nbla03646|SELADIN1|seladin-1 24-dehydrocholesterol reductase protein-coding 16-PTNLD14-TUMOR_peak_17879 chr5 167869575 167869639 + 7.01007 NA intron (NM_015238, intron 16 of 22) AluSx1|SINE|Alu -43856 NM_002887 5917 Hs.654907 NM_002887 HPRD:00142 RARS ArgRS|DALRD1 arginyl-tRNA synthetase protein-coding 16-PTNLD14-TUMOR_peak_14559 chr3 52314901 52314966 + 7.01007 NA Intergenic AluSg4|SINE|Alu -2274 NM_025222 80335 Hs.194110 NM_025222 HPRD:15183 WDR82 MST107|MSTP107|PRO2730|PRO34047|SWD2|TMEM113|WDR82A WD repeat domain 82 protein-coding 16-PTNLD14-TUMOR_peak_9002 chr17 60523713 60523760 + 6.99991 NA intron (NM_181725, intron 7 of 8) AluSx|SINE|Alu 22490 NM_181725 339175 Hs.381204 NM_181725 HPRD:07795 METTL2A METTL2 methyltransferase like 2A protein-coding 16-PTNLD14-TUMOR_peak_3689 chr11 13261753 13261805 + 6.99991 NA Intergenic AluSz6|SINE|Alu -37495 NM_001030273 406 Hs.65734 NM_001178 HPRD:03973 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator-like protein-coding 16-PTNLD14-TUMOR_peak_21938 chr9 45163266 45163313 + 6.99991 NA Intergenic AluY|SINE|Alu -157999 NR_121606 102723709 Hs.743015 NR_121606 LOC102723709 - uncharacterized LOC102723709 ncRNA 16-PTNLD14-TUMOR_peak_15961 chr4 49332765 49332826 + 6.99079 NA Intergenic ACRO1|Satellite|acro 344136 NM_001286791 80157 Hs.479703 NM_025087 HPRD:08638 CWH43 CWH43-C cell wall biogenesis 43 C-terminal homolog (S. cerevisiae) protein-coding 16-PTNLD14-TUMOR_peak_4577 chr11 103279277 103279324 + 6.98351 NA intron (NM_001080463, intron 85 of 89) intron (NM_001080463, intron 85 of 89) 299140 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein, cytoplasmic 2, heavy chain 1 protein-coding 16-PTNLD14-TUMOR_peak_14202 chr3 6362390 6362437 + 6.95145 NA Intergenic L1PA3|LINE|L1 484723 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 16-PTNLD14-TUMOR_peak_22013 chr9 67628997 67629044 + 6.95145 NA Intergenic AluY|SINE|Alu -150103 NR_121606 102723709 Hs.743015 NR_121606 LOC102723709 - uncharacterized LOC102723709 ncRNA 16-PTNLD14-TUMOR_peak_22585 chr9 133469616 133469887 + 6.95145 NA intron (NM_003934, intron 1 of 18) AluSq2|SINE|Alu 14791 NM_003934 8939 Hs.98751 NM_003934 ENSG00000107164 FUBP3 FBP3 far upstream element (FUSE) binding protein 3 protein-coding 16-PTNLD14-TUMOR_peak_14355 chr3 25754261 25754346 + 6.95145 NA Intergenic AluY|SINE|Alu -47873 NR_039644 100616477 NR_039644 miRBase:MI0016785 MIR4442 - microRNA 4442 ncRNA 16-PTNLD14-TUMOR_peak_23489 chrX 85046151 85046202 + 6.95145 NA Intergenic L1PA3|LINE|L1 256390 NM_000390 1121 Hs.496449 NM_000390 HPRD:02312 CHM DXS540|GGTA|HSD-32|REP-1|TCD choroideremia (Rab escort protein 1) protein-coding 16-PTNLD14-TUMOR_peak_5345 chr12 55490239 55490288 + 6.94797 NA Intergenic L1HS|LINE|L1 -33290 NM_001005243 441639 Hs.553827 NM_001005243 HPRD:15090 OR9K2 OR12-2 olfactory receptor, family 9, subfamily K, member 2 protein-coding 16-PTNLD14-TUMOR_peak_4663 chr11 117190684 117190747 + 6.94797 NA Intergenic AluSx1|SINE|Alu -1779 NM_001271933 22897 Hs.504009 NM_014956 HPRD:10854 CEP164 NPHP15 centrosomal protein 164kDa protein-coding 16-PTNLD14-TUMOR_peak_15985 chr4 49643093 49643143 + 6.94092 NA Intergenic (GAATG)n|Satellite|Satellite 654459 NM_001286791 80157 Hs.479703 NM_025087 HPRD:08638 CWH43 CWH43-C cell wall biogenesis 43 C-terminal homolog (S. cerevisiae) protein-coding 16-PTNLD14-TUMOR_peak_23010 chrUn_gl000235 1733 1783 + 6.90844 NA NA Intergenic NA NA 16-PTNLD14-TUMOR_peak_8025 chr16 66534886 66534935 + 6.90334 NA Intergenic L1PA4|LINE|L1 -24605 NR_109960 101927726 Hs.739193 NR_109960 BEAN1-AS1 CTD-2258A20.5 BEAN1 antisense RNA 1 ncRNA 16-PTNLD14-TUMOR_peak_5420 chr12 62763945 62763992 + 6.90334 NA intron (NM_001252078, intron 8 of 21) AluSc|SINE|Alu -96629 NM_001278471 23041 Hs.389378 NM_015026 HPRD:11123 MON2 - MON2 homolog (S. cerevisiae) protein-coding 16-PTNLD14-TUMOR_peak_15507 chr3 195194186 195194247 + 6.90334 NA Intergenic AluYb8|SINE|Alu 14451 NR_049867 100847082 NR_049867 miRBase:MI0019288 MIR5692C1 - microRNA 5692c-1 ncRNA 16-PTNLD14-TUMOR_peak_8789 chr17 42632224 42632271 + 6.90092 NA Intergenic AluSx|SINE|Alu -2565 NM_001466 2535 Hs.142912 NM_001466 FZD2 Fz2|fz-2|fzE2|hFz2 frizzled class receptor 2 protein-coding 16-PTNLD14-TUMOR_peak_15971 chr4 49633433 49633480 + 6.89919 NA Intergenic (GAATG)n|Satellite|Satellite 644797 NM_001286791 80157 Hs.479703 NM_025087 HPRD:08638 CWH43 CWH43-C cell wall biogenesis 43 C-terminal homolog (S. cerevisiae) protein-coding 16-PTNLD14-TUMOR_peak_23912 chrY 13474029 13474086 + 6.88359 NA Intergenic BSR/Beta|Satellite|Satellite 1059332 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 16-PTNLD14-TUMOR_peak_20534 chr7 157540269 157540340 + 6.88297 NA intron (NM_130842, intron 11 of 21) intron (NM_130842, intron 11 of 21) -106973 NR_038966 100506585 Hs.661265 NR_038966 ENSG00000233038 LOC100506585 - uncharacterized LOC100506585 ncRNA 16-PTNLD14-TUMOR_peak_13482 chr21 10858359 10858413 + 6.87909 NA Intergenic (GAATG)n|Satellite|Satellite 132557 NM_001290224 7179 Hs.122986 NM_199259 HPRD:05064 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 16-PTNLD14-TUMOR_peak_16239 chr4 102331639 102331686 + 6.85638 NA Intergenic L1PA2|LINE|L1 62728 NR_033874 90024 Hs.534513 NR_033874 ENSG00000254531 FLJ20021 - uncharacterized LOC90024 ncRNA 16-PTNLD14-TUMOR_peak_20117 chr7 104898478 104898534 + 6.85638 NA intron (NM_182692, intron 2 of 15) AluSc8|SINE|Alu 11018 NM_182691 6733 Hs.285197 NM_182691 HPRD:04280 SRPK2 SFRSK2 SRSF protein kinase 2 protein-coding 16-PTNLD14-TUMOR_peak_23487 chrX 84985928 84985975 + 6.85638 NA Intergenic L1PA3|LINE|L1 316615 NM_000390 1121 Hs.496449 NM_000390 HPRD:02312 CHM DXS540|GGTA|HSD-32|REP-1|TCD choroideremia (Rab escort protein 1) protein-coding 16-PTNLD14-TUMOR_peak_16566 chr4 159667563 159667722 + 6.85638 NA Intergenic SVA_D|Other|Other -22540 NM_020840 57600 Hs.652441 NM_020840 ENSG00000052795 FNIP2 FNIPL|MAPO1 folliculin interacting protein 2 protein-coding 16-PTNLD14-TUMOR_peak_18637 chr6 49029366 49029413 + 6.83482 NA Intergenic L1PA4|LINE|L1 401652 NM_000255 4594 Hs.485527 NM_000255 HPRD:02014 MUT MCM methylmalonyl CoA mutase protein-coding 16-PTNLD14-TUMOR_peak_7336 chr16 874324 874410 + 6.83482 NA Intergenic CpG 18924 NM_001013638 388199 Hs.528461 NM_001013638 HPRD:18379 PRR25 gs64 proline rich 25 protein-coding 16-PTNLD14-TUMOR_peak_13862 chr22 20139358 20139409 + 6.83482 NA Intergenic AluY|SINE|Alu -1952 NM_001243537 388849 Hs.454905 NM_001243537 LOC388849 - uncharacterized LOC388849 protein-coding 16-PTNLD14-TUMOR_peak_8112 chr16 70509989 70510039 + 6.80921 NA intron (NM_145059, intron 20 of 23) AluY|SINE|Alu 21516 NM_145059 197258 Hs.7907 NM_145059 HPRD:16365 FUK 1110046B12Rik fucokinase protein-coding 16-PTNLD14-TUMOR_peak_23001 chrUn_gl000229 690 738 + 6.80891 NA NA Intergenic NA NA 16-PTNLD14-TUMOR_peak_20677 chr8 8016264 8016337 + 6.80044 NA Intergenic L1PA4|LINE|L1 -69689 NR_031689 100302186 NR_031689 miRBase:MI0006423 MIR548I3 MIR548I-3|MIRN548I3|hsa-mir-548i-3 microRNA 548i-3 ncRNA 16-PTNLD14-TUMOR_peak_14157 chr22 50745114 50745161 + 6.80044 NA intron (NM_012401, intron 1 of 36) (CCCCCA)n|Simple_repeat|Simple_repeat 864 NM_012401 23654 Hs.3989 NM_012401 HPRD:05050 PLXNB2 MM1|Nbla00445|PLEXB2|dJ402G11.3 plexin B2 protein-coding 16-PTNLD14-TUMOR_peak_9737 chr19 1640706 1640753 + 6.79826 NA intron (NM_001136139, intron 2 of 18) AluY|SINE|Alu 9557 NM_001136139 6929 Hs.371282 NM_003200 HPRD:00918 TCF3 E2A|E47|ITF1|TCF-3|VDIR|bHLHb21 transcription factor 3 protein-coding 16-PTNLD14-TUMOR_peak_5862 chr12 129523840 129523887 + 6.79826 NA Intergenic L1PA4|LINE|L1 -70372 NR_104173 283352 Hs.665667 NR_104172 ENSG00000249196 LOC283352 - uncharacterized LOC283352 ncRNA 16-PTNLD14-TUMOR_peak_24051 chrY 23172062 23172109 + 6.76297 NA Intergenic L1PA2|LINE|L1 254131 NM_001039567 140032 Hs.367761 NM_001039567 HPRD:15960 RPS4Y2 RPS4Y2P ribosomal protein S4, Y-linked 2 protein-coding 16-PTNLD14-TUMOR_peak_20120 chr7 105206641 105206688 + 6.76297 NA intron (NM_021930, intron 14 of 14) AluY|SINE|Alu 15312 NR_027068 100130771 Hs.719432 NR_027068 ENSG00000185055 EFCAB10 - EF-hand calcium binding domain 10 ncRNA 16-PTNLD14-TUMOR_peak_4382 chr11 72562694 72562741 + 6.76297 NA intron (NM_014824, intron 13 of 19) AluSc8|SINE|Alu 37266 NM_033388 89849 Hs.653186 NM_033388 HPRD:10959 ATG16L2 ATG16B|WDR80 autophagy related 16-like 2 (S. cerevisiae) protein-coding 16-PTNLD14-TUMOR_peak_17559 chr5 130386551 130386598 + 6.76297 NA Intergenic L1PA4|LINE|L1 114467 NR_073488 3094 Hs.483305 NM_005340 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 16-PTNLD14-TUMOR_peak_17671 chr5 140469204 140469272 + 6.76297 NA Intergenic AluY|SINE|Alu -4953 NM_018936 56133 Hs.533023 NM_018936 HPRD:07558 PCDHB2 PCDH-BETA2 protocadherin beta 2 protein-coding 16-PTNLD14-TUMOR_peak_12051 chr2 130965994 130966042 + 6.76120 NA Intergenic AluSx1|SINE|Alu -9984 NM_207312 112714 Hs.433336 NM_207312 HPRD:17288 TUBA3E - tubulin, alpha 3e protein-coding 16-PTNLD14-TUMOR_peak_4338 chr11 70921371 70921423 + 6.76120 NA intron (NM_012309, intron 1 of 22) AluY|SINE|Alu 14445 NM_012309 22941 Hs.268726 NM_012309 HPRD:04479 SHANK2 AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 SH3 and multiple ankyrin repeat domains 2 protein-coding 16-PTNLD14-TUMOR_peak_4843 chr12 589115 589212 + 6.72376 NA intron (NM_173593, intron 1 of 19) AluY|SINE|Alu 19620 NM_173593 283358 Hs.504416 NM_173593 HPRD:12514 B4GALNT3 - beta-1,4-N-acetyl-galactosaminyl transferase 3 protein-coding 16-PTNLD14-TUMOR_peak_4832 chr12 545358 545421 + 6.72362 NA intron (NM_032358, intron 9 of 12) AluY|SINE|Alu -24154 NM_173593 283358 Hs.504416 NM_173593 HPRD:12514 B4GALNT3 - beta-1,4-N-acetyl-galactosaminyl transferase 3 protein-coding 16-PTNLD14-TUMOR_peak_21161 chr8 88335401 88335466 + 6.71781 NA intron (NM_173538, intron 8 of 10) L1PA2|LINE|L1 456757 NM_173538 168975 Hs.246284 NM_173538 HPRD:08192 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 16-PTNLD14-TUMOR_peak_14056 chr22 38334201 38334248 + 6.71781 NA intron (NM_033386, intron 15 of 15) AluY|SINE|Alu 15430 NM_032561 84645 Hs.517612 NM_032561 HPRD:12799 C22orf23 EVG1|dJ1039K5.6 chromosome 22 open reading frame 23 protein-coding 16-PTNLD14-TUMOR_peak_6442 chr14 49407995 49408156 + 6.71781 NA Intergenic (TTATA)n|Simple_repeat|Simple_repeat 645059 NM_001032 6235 Hs.156367 NM_001032 HPRD:04698 RPS29 DBA13|S29 ribosomal protein S29 protein-coding 16-PTNLD14-TUMOR_peak_16957 chr5 40547002 40547086 + 6.71781 NA Intergenic L1PA2|LINE|L1 -132988 NM_000958 5734 Hs.199248 NM_000958 HPRD:03350 PTGER4 EP4|EP4R prostaglandin E receptor 4 (subtype EP4) protein-coding 16-PTNLD14-TUMOR_peak_11048 chr19_gl000208_random 75315 75392 + 6.69650 NA NA ALR/Alpha|Satellite|centr NA NA 16-PTNLD14-TUMOR_peak_12488 chr2 204683117 204683173 + 6.68791 NA Intergenic AluSq2|SINE|Alu -49366 NM_001037631 1493 Hs.247824 NM_005214 HPRD:00474 CTLA4 CD|CD152|CELIAC3|CTLA-4|GRD4|GSE|IDDM12 cytotoxic T-lymphocyte-associated protein 4 protein-coding 16-PTNLD14-TUMOR_peak_22542 chr9 132268849 132268896 + 6.68791 NA intron (NR_038955, intron 4 of 4) AluY|SINE|Alu 17933 NR_038955 100506190 Hs.529860 NR_038955 LINC00963 - long intergenic non-protein coding RNA 963 ncRNA 16-PTNLD14-TUMOR_peak_3964 chr11 48414426 48414473 + 6.67274 NA Intergenic L1PA2|LINE|L1 -40450 NM_001005513 403257 Hs.554533 NM_001005513 OR4C45 - olfactory receptor, family 4, subfamily C, member 45 protein-coding 16-PTNLD14-TUMOR_peak_12702 chr2 234850745 234850819 + 6.67274 NA intron (NM_024080, intron 5 of 25) AluSg7|SINE|Alu 24739 NM_024080 79054 Hs.366053 NM_024080 HPRD:09454 TRPM8 LTRPC6|TRPP8 transient receptor potential cation channel, subfamily M, member 8 protein-coding 16-PTNLD14-TUMOR_peak_21290 chr8 112292132 112292194 + 6.67274 NA Intergenic AluY|SINE|Alu -43731 NR_125418 101927487 Hs.630004 NR_125418 LOC101927487 - uncharacterized LOC101927487 ncRNA 16-PTNLD14-TUMOR_peak_22553 chr9 132398861 132398954 + 6.67274 NA TTS (NM_014064) TTS (NM_014064) 5541 NM_177999 140459 Hs.125037 NM_017873 ASB6 - ankyrin repeat and SOCS box containing 6 protein-coding 16-PTNLD14-TUMOR_peak_4779 chr11 131659716 131659827 + 6.67274 NA intron (NM_001048209, intron 1 of 7) AluY|SINE|Alu -120941 NM_001144058 50863 Hs.504352 NM_016522 HPRD:06398 NTM HNT|IGLON2|NTRI neurotrimin protein-coding 16-PTNLD14-TUMOR_peak_15420 chr3 184175958 184176049 + 6.65289 NA Intergenic AluSx|SINE|Alu 78142 NM_003741 8646 Hs.166186 NM_003741 HPRD:04592 CHRD - chordin protein-coding 16-PTNLD14-TUMOR_peak_8446 chr17 6483398 6483445 + 6.65289 NA intron (NM_014804, intron 18 of 18) AluSx|SINE|Alu -23544 NM_031220 83394 Hs.183983 NM_031220 HPRD:07498 PITPNM3 ACKR6|CORD5|NIR1|RDGBA3 PITPNM family member 3 protein-coding 16-PTNLD14-TUMOR_peak_5486 chr12 70093530 70093577 + 6.65289 NA promoter-TSS (NM_001282613) promoter-TSS (NM_001282613) -357 NM_001282615 144453 Hs.280782 NM_032735 HPRD:17484 BEST3 VMD2L3 bestrophin 3 protein-coding 16-PTNLD14-TUMOR_peak_9873 chr19 8605489 8605543 + 6.64936 NA intron (NM_012335, intron 15 of 27) AluSx1|SINE|Alu -26468 NM_001146175 84330 Hs.515114 NM_032370 HPRD:17511 ZNF414 ZFP414 zinc finger protein 414 protein-coding 16-PTNLD14-TUMOR_peak_14177 chr3 3089268 3089350 + 6.62955 NA intron (NM_001206956, intron 14 of 15) L1P1|LINE|L1 13520 NR_046554 100873975 Hs.581502 NR_046554 CNTN4-AS1 - CNTN4 antisense RNA 1 ncRNA 16-PTNLD14-TUMOR_peak_9465 chr18 20389701 20389791 + 6.62856 NA Intergenic L1PA5|LINE|L1 -22946 NR_110782 101927571 Hs.335020 NR_110782 ENSG00000266850 LOC101927571 - uncharacterized LOC101927571 ncRNA 16-PTNLD14-TUMOR_peak_15259 chr3 158880134 158880181 + 6.62856 NA intron (NM_001042706, intron 1 of 3) L1PA3|LINE|L1 93116 NM_001197100 654502 Hs.570685 NM_001042705 ENSG00000214216 IQCJ - IQ motif containing J protein-coding 16-PTNLD14-TUMOR_peak_8703 chr17 35037940 35037990 + 6.62856 NA Intergenic AluY|SINE|Alu 79940 NM_024864 79922 Hs.194864 NM_024864 HPRD:08656 MRM1 - mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae) protein-coding 16-PTNLD14-TUMOR_peak_7793 chr16 33240827 33240907 + 6.62211 NA Intergenic (GCTG)n|Simple_repeat|Simple_repeat -21251 NR_110911 729355 Hs.592038 NM_001099687 ENSG00000261509 TP53TG3B - TP53 target 3B protein-coding 16-PTNLD14-TUMOR_peak_987 chr1 93745131 93745184 + 6.60136 NA TTS (NM_206886) TTS (NM_206886) 66211 NR_034089 100131564 Hs.732666 NR_034089 LOC100131564 - uncharacterized LOC100131564 ncRNA 16-PTNLD14-TUMOR_peak_938 chr1 87375466 87375516 + 6.60136 NA intron (NM_203341, intron 1 of 3) AluSx3|SINE|Alu 4616 NM_004261 9403 Hs.362728 NM_004261 HPRD:09376 SEP15 - 15 kDa selenoprotein protein-coding 16-PTNLD14-TUMOR_peak_20696 chr8 12399449 12399581 + 6.60136 NA intron (NR_047662, intron 8 of 8) L1P1|LINE|L1 104993 NR_040092 100506990 Hs.656893 NR_040091 LOC100506990 - uncharacterized LOC100506990 ncRNA 16-PTNLD14-TUMOR_peak_21977 chr9 66795153 66795206 + 6.59967 NA Intergenic ALR/Alpha|Satellite|centr -127788 NR_121570 101928381 Hs.708686 NR_121570 LOC101928381 - uncharacterized LOC101928381 ncRNA 16-PTNLD14-TUMOR_peak_20769 chr8 27491347 27491394 + 6.58441 NA promoter-TSS (NM_182826) promoter-TSS (NM_182826) -207 NM_182826 51435 Hs.128856 NM_016240 HPRD:04104 SCARA3 APC7|CSR|CSR1|MSLR1|MSRL1 scavenger receptor class A, member 3 protein-coding 16-PTNLD14-TUMOR_peak_5068 chr12 22531707 22531816 + 6.58441 NA Intergenic AluSc|SINE|Alu -44113 NM_003034 6489 Hs.408614 NM_003034 HPRD:03078 ST8SIA1 GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 protein-coding 16-PTNLD14-TUMOR_peak_12445 chr2 201548239 201548377 + 6.58441 NA Intergenic SVA_E|Other|Other -12138 NR_001557 344454 Hs.148269 NR_001557 AOX2P AOH2|AOX2 aldehyde oxidase 2 pseudogene pseudo 16-PTNLD14-TUMOR_peak_23811 chrY 4738998 4739045 + 6.58441 NA Intergenic L1PA3|LINE|L1 -129246 NM_032971 83259 Hs.661308 NM_032971 HPRD:11847 PCDH11Y PCDH-PC|PCDH22|PCDHX|PCDHY protocadherin 11 Y-linked protein-coding 16-PTNLD14-TUMOR_peak_14760 chr3 90400477 90400524 + 6.55091 NA Intergenic ALR/Alpha|Satellite|centr 1243826 NM_182644 2042 Hs.123642 NM_005233 HPRD:01555 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 16-PTNLD14-TUMOR_peak_14800 chr3 99010923 99010971 + 6.54193 NA Intergenic L1PA3|LINE|L1 -346493 NM_020351 1295 Hs.654548 NM_001850 HPRD:00372 COL8A1 C3orf7 collagen, type VIII, alpha 1 protein-coding 16-PTNLD14-TUMOR_peak_21769 chr9 27695489 27695536 + 6.54193 NA Intergenic L1PA2|LINE|L1 -121648 NM_001256054 203228 Hs.493639 NM_018325 HPRD:12975 C9orf72 ALSFTD|FTDALS chromosome 9 open reading frame 72 protein-coding 16-PTNLD14-TUMOR_peak_10537 chr19 40517162 40517215 + 6.54193 NA intron (NM_178544, intron 6 of 6) AluSx4|SINE|Alu 14245 NM_001297763 339327 Hs.125008 NM_178544 HPRD:11726 ZNF546 ZNF49 zinc finger protein 546 protein-coding 16-PTNLD14-TUMOR_peak_3881 chr11 36435414 36435474 + 6.51548 NA intron (NM_024841, intron 4 of 9) L1PA3|LINE|L1 12897 NM_001160169 79899 Hs.19987 NM_024841 HPRD:07854 PRR5L PROTOR2 proline rich 5 like protein-coding 16-PTNLD14-TUMOR_peak_4837 chr12 557444 557491 + 6.50323 NA Intergenic AluY|SINE|Alu -12076 NM_173593 283358 Hs.504416 NM_173593 HPRD:12514 B4GALNT3 - beta-1,4-N-acetyl-galactosaminyl transferase 3 protein-coding 16-PTNLD14-TUMOR_peak_15030 chr3 131066497 131066544 + 6.49870 NA intron (NR_038976, intron 2 of 3) AluSx1|SINE|Alu -14169 NR_002949 152195 Hs.380350 NM_194289 HPRD:14093 NUDT16P1 NUDT16P nudix (nucleoside diphosphate linked moiety X)-type motif 16 pseudogene 1 pseudo 16-PTNLD14-TUMOR_peak_19920 chr7 85971763 85971810 + 6.48731 NA Intergenic L1PA2|LINE|L1 -301444 NM_000840 2913 Hs.590575 NM_000840 HPRD:03070 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate receptor, metabotropic 3 protein-coding 16-PTNLD14-TUMOR_peak_24056 chrY 26426885 26426943 + 6.45831 NA Intergenic Intergenic -65936 NR_001555 84559 Hs.531603 NR_001555 ENSG00000172332 GOLGA2P2Y GOLGA2LY|GOLGA2LY1|GOLGA2P2 golgin A2 pseudogene 2, Y-linked pseudo 16-PTNLD14-TUMOR_peak_3685 chr11 13109035 13109183 + 6.45569 NA Intergenic L1PA7|LINE|L1 78139 NM_001080521 644943 Hs.134650 NM_001080521 RASSF10 - Ras association (RalGDS/AF-6) domain family (N-terminal) member 10 protein-coding 16-PTNLD14-TUMOR_peak_9007 chr17 61102896 61102943 + 6.45569 NA intron (NM_025185, intron 1 of 24) AluSz6|SINE|Alu 16021 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 16-PTNLD14-TUMOR_peak_12211 chr2 158427136 158427183 + 6.45569 NA intron (NM_001111031, intron 2 of 8) L1HS|LINE|L1 26913 NM_001111031 130399 Hs.562901 NM_145259 HPRD:10608 ACVR1C ACVRLK7|ALK7 activin A receptor, type IC protein-coding 16-PTNLD14-TUMOR_peak_21514 chr8 140399900 140399952 + 6.45569 NA Intergenic AluSg|SINE|Alu 315373 NR_104210 51305 Hs.493037 NM_001282534 HPRD:16167 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium channel, subfamily K, member 9 protein-coding 16-PTNLD14-TUMOR_peak_23493 chrX 85605464 85605511 + 6.45569 NA intron (NM_001139515, intron 1 of 11) L1HS|LINE|L1 87516 NM_001139515 117154 Hs.86603 NM_053281 HPRD:06481 DACH2 - dachshund family transcription factor 2 protein-coding 16-PTNLD14-TUMOR_peak_15049 chr3 133527849 133527898 + 6.44604 NA intron (NM_021203, intron 4 of 7) AluSx1|SINE|Alu 24996 NM_021203 58477 Hs.12152 NM_021203 HPRD:18105 SRPRB APMCF1 signal recognition particle receptor, B subunit protein-coding 16-PTNLD14-TUMOR_peak_2796 chr10 42379889 42379943 + 6.43101 NA Intergenic Intergenic 483577 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 16-PTNLD14-TUMOR_peak_21308 chr8 114792528 114792654 + 6.41297 NA Intergenic L1PA2|LINE|L1 -343349 NM_198123 114788 Hs.91381 NM_052900 HPRD:16329 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 16-PTNLD14-TUMOR_peak_11348 chr2 43524732 43524854 + 6.41297 NA intron (NM_022065, intron 31 of 37) SVA_F|Other|Other 70443 NR_027251 100129726 Hs.194480 NM_178529 LINC01126 - long intergenic non-protein coding RNA 1126 ncRNA 16-PTNLD14-TUMOR_peak_22449 chr9 127027531 127027585 + 6.41197 NA intron (NM_001166168, intron 1 of 9) AluSg|SINE|Alu 7028 NM_001166168 10783 Hs.197071 NM_014397 HPRD:05348 NEK6 SID6-1512 NIMA-related kinase 6 protein-coding 16-PTNLD14-TUMOR_peak_4435 chr11 76361786 76361843 + 6.41197 NA Intergenic AluSx|SINE|Alu 19230 NM_005512 2615 Hs.151641 NM_005512 HPRD:00667 LRRC32 D11S833E|GARP leucine rich repeat containing 32 protein-coding 16-PTNLD14-TUMOR_peak_22583 chr9 133436314 133436361 + 6.37802 NA Intergenic AluSz|SINE|Alu 18544 NR_027440 100272217 Hs.601255 NR_027440 LOC100272217 - uncharacterized LOC100272217 ncRNA 16-PTNLD14-TUMOR_peak_15979 chr4 49639133 49639184 + 6.37425 NA Intergenic (GAATG)n|Satellite|Satellite 650499 NM_001286791 80157 Hs.479703 NM_025087 HPRD:08638 CWH43 CWH43-C cell wall biogenesis 43 C-terminal homolog (S. cerevisiae) protein-coding 16-PTNLD14-TUMOR_peak_5022 chr12 19753381 19753428 + 6.37258 NA Intergenic AluSx|SINE|Alu 159889 NM_001267043 121536 Hs.126497 NM_153207 AEBP2 - AE binding protein 2 protein-coding 16-PTNLD14-TUMOR_peak_5575 chr12 95332235 95332313 + 6.37258 NA Intergenic AluSx1|SINE|Alu 65215 NM_018838 55967 Hs.506374 NM_018838 HPRD:16781 NDUFA12 B17.2|DAP13 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12 protein-coding 16-PTNLD14-TUMOR_peak_11275 chr2 31128770 31128817 + 6.37258 NA Intergenic L1PA2|LINE|L1 -98482 NM_144575 92291 Hs.660911 NM_144575 HPRD:07008 CAPN13 - calpain 13 protein-coding 16-PTNLD14-TUMOR_peak_22460 chr9 127096242 127096332 + 6.37258 NA intron (NM_001166171, intron 8 of 10) AluSc8|SINE|Alu -19465 NR_027406 100129034 Hs.654980 NR_027406 LOC100129034 - uncharacterized LOC100129034 ncRNA 16-PTNLD14-TUMOR_peak_22335 chr9 111010297 111010486 + 6.36281 NA Intergenic (CACAC)n|Simple_repeat|Simple_repeat 607884 NM_006686 10880 Hs.534390 NM_006686 ACTL7B Tact1 actin-like 7B protein-coding 16-PTNLD14-TUMOR_peak_7181 chr15 83286668 83286726 + 6.36281 NA intron (NM_030594, intron 2 of 11) AluYa5|SINE|Alu 29659 NM_001288819 64506 Hs.459132 NM_030594 HPRD:09553 CPEB1 CEBP|CPE-BP1|CPEB|CPEB-1|hCPEB-1 cytoplasmic polyadenylation element binding protein 1 protein-coding 16-PTNLD14-TUMOR_peak_3688 chr11 13210601 13210648 + 6.36281 NA Intergenic AluY|SINE|Alu -88650 NM_001030273 406 Hs.65734 NM_001178 HPRD:03973 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator-like protein-coding 16-PTNLD14-TUMOR_peak_9502 chr18 30201689 30201736 + 6.36281 NA Intergenic AluY|SINE|Alu 110086 NR_003558 441818 Hs.549773 NR_003558 ENSG00000260389 WBP11P1 HsT3017 WW domain binding protein 11 pseudogene 1 pseudo 16-PTNLD14-TUMOR_peak_5195 chr12 38357928 38357975 + 6.36281 NA Intergenic ALR/Alpha|Satellite|centr -352606 NM_001013620 144245 Hs.259305 NM_001013620 ALG10B ALG10|KCR1 ALG10B, alpha-1,2-glucosyltransferase protein-coding 16-PTNLD14-TUMOR_peak_23846 chrY 8044574 8044644 + 6.36281 NA Intergenic L1PA3|LINE|L1 371644 NR_001551 83867 Hs.667616 NR_001551 ENSG00000237048 TTTY12 NCRNA00135|TTY11|TTY12 testis-specific transcript, Y-linked 12 (non-protein coding) ncRNA 16-PTNLD14-TUMOR_peak_23078 chrX 20010238 20010294 + 6.36281 NA Intergenic AluSx|SINE|Alu -2369 NR_024440 729609 Hs.554726 NR_024440 LOC729609 - uncharacterized LOC729609 ncRNA 16-PTNLD14-TUMOR_peak_17072 chr5 49464481 49464528 + 6.36281 NA Intergenic ALR/Alpha|Satellite|centr 272730 NM_198449 133418 Hs.561411 NM_198449 HPRD:13271 EMB GP70 embigin protein-coding 16-PTNLD14-TUMOR_peak_21642 chr9 3195182 3195229 + 6.36281 NA intron (NR_121585, intron 3 of 4) AluY|SINE|Alu 13616 NR_121585 101929247 Hs.547178 NR_121585 LINC01231 - long intergenic non-protein coding RNA 1231 ncRNA 16-PTNLD14-TUMOR_peak_7665 chr16 28709340 28709392 + 6.36281 NA intron (NM_001199142, intron 1 of 20) SVA_F|Other|Other 9487 NM_001199142 8663 Hs.567374 NM_003752 HPRD:04889 EIF3C EIF3CL|EIF3S8|eIF3-p110 eukaryotic translation initiation factor 3, subunit C protein-coding 16-PTNLD14-TUMOR_peak_4783 chr11 132895669 132895716 + 6.36281 NA intron (NM_001012393, intron 1 of 7) AluSx3|SINE|Alu -82655 NM_002545 4978 Hs.4817 NM_002545 HPRD:07198 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule-like protein-coding 16-PTNLD14-TUMOR_peak_22363 chr9 115323422 115323469 + 6.36281 NA intron (NM_001287036, intron 1 of 4) AluY|SINE|Alu 74197 NM_001287038 158405 Hs.656619 NM_133465 HPRD:11173 KIAA1958 - KIAA1958 protein-coding 16-PTNLD14-TUMOR_peak_3114 chr10 75319697 75319745 + 6.36281 NA intron (NM_152586, intron 2 of 21) AluSz|SINE|Alu 15712 NM_152586 159195 Hs.657355 NM_152586 HPRD:15641 USP54 C10orf29|bA137L10.3|bA137L10.4 ubiquitin specific peptidase 54 protein-coding 16-PTNLD14-TUMOR_peak_18709 chr6 61919651 61919698 + 6.36281 NA Intergenic ALR/Alpha|Satellite|centr -364334 NM_001190706 100463487 NM_001190706 ENSG00000255633 MTRNR2L9 HN9 MT-RNR2-like 9 (pseudogene) protein-coding 16-PTNLD14-TUMOR_peak_7005 chr15 51023638 51023685 + 6.36281 NA intron (NM_032802, intron 9 of 14) AluSg|SINE|Alu 34249 NM_032802 84888 Hs.401537 NM_032802 HPRD:09742 SPPL2A IMP3|PSL2 signal peptide peptidase like 2A protein-coding 16-PTNLD14-TUMOR_peak_6447 chr14 50213851 50213898 + 6.36281 NA intron (NM_172193, intron 12 of 12) AluY|SINE|Alu -20913 NM_014315 23588 Hs.509264 NM_014315 HPRD:08824 KLHDC2 HCLP-1|HCLP1|LCP kelch domain containing 2 protein-coding 16-PTNLD14-TUMOR_peak_23438 chrX 74989325 74989372 + 6.36281 NA Intergenic L1PA3|LINE|L1 15731 NM_138703 139599 Hs.356869 NM_138703 HPRD:06585 MAGEE2 HCA3 melanoma antigen family E, 2 protein-coding 16-PTNLD14-TUMOR_peak_16237 chr4 102083428 102083475 + 6.36281 NA intron (NM_001130691, intron 2 of 12) AluSg7|SINE|Alu 78578 NR_107033 102465868 NR_107033 MIR8066 hsa-mir-8066 microRNA 8066 ncRNA 16-PTNLD14-TUMOR_peak_16331 chr4 120300413 120300460 + 6.36281 NA Intergenic L1PA2|LINE|L1 31379 NR_037596 401149 Hs.448518 NR_037596 LINC01061 - long intergenic non-protein coding RNA 1061 ncRNA 16-PTNLD14-TUMOR_peak_3887 chr11 38093833 38093880 + 6.36281 NA Intergenic Intergenic 574050 NR_120555 103312105 Hs.641711 NR_120554 LOC103312105 - uncharacterized LOC103312105 ncRNA 16-PTNLD14-TUMOR_peak_23317 chrX 62415021 62415096 + 6.36281 NA Intergenic L1PA5|LINE|L1 156160 NM_001012968 139886 Hs.612782 NM_001012968 HPRD:12556 SPIN4 - spindlin family, member 4 protein-coding 16-PTNLD14-TUMOR_peak_17575 chr5 131949330 131949377 + 6.36281 NA intron (NM_005732, intron 19 of 24) AluSz|SINE|Alu -44512 NM_002188 3596 Hs.845 NM_002188 HPRD:00981 IL13 IL-13|P600 interleukin 13 protein-coding 16-PTNLD14-TUMOR_peak_5855 chr12 127068865 127068921 + 6.36281 NA Intergenic Intergenic 105971 NR_110035 100996671 Hs.121392 NR_110034 LOC100996671 - uncharacterized LOC100996671 ncRNA 16-PTNLD14-TUMOR_peak_5527 chr12 78030382 78030429 + 6.36281 NA Intergenic L1PA7|LINE|L1 -194664 NM_001024383 89795 Hs.655301 NM_014903 HPRD:10114 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 16-PTNLD14-TUMOR_peak_1955 chr1 197419960 197420007 + 6.36281 NA intron (NR_047564, intron 11 of 11) AluY|SINE|Alu 182649 NR_047564 23418 Hs.126135 NM_012076 HPRD:05019 CRB1 LCA8|RP12 crumbs family member 1, photoreceptor morphogenesis associated protein-coding 16-PTNLD14-TUMOR_peak_23588 chrX 107890878 107890929 + 6.36281 NA intron (NM_033380, intron 36 of 50) L1PA4|LINE|L1 88704 NM_003604 8471 Hs.460872 NM_003604 HPRD:04620 IRS4 IRS-4|PY160 insulin receptor substrate 4 protein-coding 16-PTNLD14-TUMOR_peak_7990 chr16 58202858 58202905 + 6.36281 NA intron (NM_001896, intron 5 of 11) AluY|SINE|Alu 28901 NM_001896 1459 Hs.82201 NM_001896 HPRD:00279 CSNK2A2 CK2A2|CSNK2A1 casein kinase 2, alpha prime polypeptide protein-coding 16-PTNLD14-TUMOR_peak_22091 chr9 78736886 78736935 + 6.36281 NA intron (NR_120409, intron 9 of 19) AluYa5|SINE|Alu 231350 NM_001190482 5125 Hs.368542 NM_006200 HPRD:08985 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 16-PTNLD14-TUMOR_peak_21039 chr8 64204744 64204791 + 6.36281 NA Intergenic AluSx1|SINE|Alu 123205 NM_001277818 253943 Hs.491861 NM_152758 HPRD:08106 YTHDF3 - YTH domain family, member 3 protein-coding 16-PTNLD14-TUMOR_peak_3306 chr10 108828494 108828549 + 6.36281 NA intron (NM_001013031, intron 1 of 26) AluY|SINE|Alu 95945 NM_001206572 114815 Hs.591915 NM_052918 HPRD:12098 SORCS1 hSorCS sortilin-related VPS10 domain containing receptor 1 protein-coding 16-PTNLD14-TUMOR_peak_6053 chr13 66188826 66188873 + 6.36281 NA Intergenic L1PA3|LINE|L1 -1210452 NR_046527 100874064 Hs.569284 NR_046527 ENSG00000228842 PCDH9-AS2 - PCDH9 antisense RNA 2 ncRNA 16-PTNLD14-TUMOR_peak_19349 chr7 15112232 15112279 + 6.36281 NA Intergenic AluY|SINE|Alu -231180 NM_004080 1607 Hs.567255 NM_004080 HPRD:06819 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase, beta 90kDa protein-coding 16-PTNLD14-TUMOR_peak_22452 chr9 127049851 127049898 + 6.36281 NA intron (NM_001166168, intron 1 of 9) AluSx|SINE|Alu -4376 NM_001166171 10783 Hs.197071 NM_014397 HPRD:05348 NEK6 SID6-1512 NIMA-related kinase 6 protein-coding 16-PTNLD14-TUMOR_peak_8832 chr17 45258959 45259006 + 6.36281 NA exon (NM_001293091, exon 2 of 18) exon (NM_001293091, exon 2 of 18) 7696 NM_001293091 996 Hs.463295 NM_001256 HPRD:00304 CDC27 ANAPC3|APC3|CDC27Hs|D0S1430E|D17S978E|H-NUC|HNUC|NUC2 cell division cycle 27 protein-coding 16-PTNLD14-TUMOR_peak_2085 chr1 212953255 212953302 + 6.36281 NA intron (NM_001042549, intron 4 of 6) SVA_D|Other|Other 11861 NM_015471 25936 Hs.497692 NM_015471 HPRD:12378 NSL1 C1orf48|MIS14 NSL1, MIS12 kinetochore complex component protein-coding 16-PTNLD14-TUMOR_peak_12260 chr2 165729320 165729372 + 6.36281 NA Intergenic AluSx3|SINE|Alu -30668 NM_001278460 22837 Hs.470457 NM_014900 HPRD:10844 COBLL1 COBLR1 cordon-bleu WH2 repeat protein-like 1 protein-coding 16-PTNLD14-TUMOR_peak_2547 chr10 17785876 17785923 + 6.36281 NA Intergenic AluY|SINE|Alu -8361 NM_001098844 653567 Hs.564139 NM_001013629 ENSG00000148483 TMEM236 FAM23A|FAM23B|bA162I21.2|bA16O1.2 transmembrane protein 236 protein-coding 16-PTNLD14-TUMOR_peak_6108 chr13 91715656 91715716 + 6.36281 NA Intergenic AluSx|SINE|Alu 28007 NR_104057 101930747 Hs.112745 NR_104057 LINC00380 - long intergenic non-protein coding RNA 380 ncRNA 16-PTNLD14-TUMOR_peak_16147 chr4 78648496 78648544 + 6.36281 NA intron (NM_001286790, intron 10 of 11) AluSq|SINE|Alu 92024 NM_001286790 246175 Hs.592519 NM_144571 HPRD:10841 CNOT6L CCR4b CCR4-NOT transcription complex, subunit 6-like protein-coding 16-PTNLD14-TUMOR_peak_16556 chr4 158162143 158162190 + 6.36281 NA intron (NM_000826, intron 2 of 15) L1PA2|LINE|L1 20346 NM_001083620 2891 Hs.32763 NM_000826 HPRD:04726 GRIA2 GLUR2|GLURB|GluA2|GluR-K2|HBGR2 glutamate receptor, ionotropic, AMPA 2 protein-coding 16-PTNLD14-TUMOR_peak_12218 chr2 159411170 159411217 + 6.36281 NA intron (NM_001005476, intron 2 of 20) AluY|SINE|Alu 97717 NM_001005476 8502 Hs.407580 NM_003628 HPRD:05043 PKP4 p0071 plakophilin 4 protein-coding 16-PTNLD14-TUMOR_peak_12745 chr2 238752817 238752864 + 6.36281 NA Intergenic L1PA5|LINE|L1 -15347 NM_005855 10267 Hs.471783 NM_005855 HPRD:05515 RAMP1 - receptor (G protein-coupled) activity modifying protein 1 protein-coding 16-PTNLD14-TUMOR_peak_11593 chr2 77282633 77282680 + 6.36281 NA intron (NM_001134745, intron 3 of 3) L1PA3|LINE|L1 69565 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 16-PTNLD14-TUMOR_peak_23194 chrX 51143897 51143950 + 6.36281 NA Intergenic L1ME3A|LINE|L1 -5844 NM_203407 340602 Hs.97053 NM_203407 HPRD:14176 CXorf67 - chromosome X open reading frame 67 protein-coding 16-PTNLD14-TUMOR_peak_14129 chr22 46290972 46291069 + 6.36281 NA Intergenic AluSx1|SINE|Alu 81988 NM_058238 7477 Hs.512714 NM_058238 HPRD:03573 WNT7B - wingless-type MMTV integration site family, member 7B protein-coding 16-PTNLD14-TUMOR_peak_11121 chr2 7628881 7629038 + 6.36281 NA Intergenic (GGAA)n|Simple_repeat|Simple_repeat 67567 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 16-PTNLD14-TUMOR_peak_19697 chr7 62170121 62170168 + 6.36281 NA Intergenic ALR/Alpha|Satellite|centr 594290 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 16-PTNLD14-TUMOR_peak_19533 chr7 49720402 49720456 + 6.36281 NA Intergenic L1HS|LINE|L1 -92828 NM_198570 375567 Hs.629302 NM_198570 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 16-PTNLD14-TUMOR_peak_4361 chr11 71678096 71678181 + 6.36281 NA intron (NR_024148, intron 3 of 8) AluYb8|SINE|Alu -31820 NM_001039660 10068 Hs.591967 NM_005699 HPRD:04984 IL18BP IL18BPa interleukin 18 binding protein protein-coding 16-PTNLD14-TUMOR_peak_23709 chrX 144325608 144325658 + 6.36281 NA Intergenic AluSg|SINE|Alu -3474 NM_001009614 494118 Hs.551270 NM_001009614 SPANXN1 CT11.6 SPANX family, member N1 protein-coding 16-PTNLD14-TUMOR_peak_9554 chr18 46037651 46037738 + 6.36281 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -27733 NM_014772 9811 Hs.145230 NM_014772 HPRD:11083 CTIF Gm672|KIAA0427 CBP80/20-dependent translation initiation factor protein-coding 16-PTNLD14-TUMOR_peak_17728 chr5 144312539 144312606 + 6.36281 NA Intergenic L1PA3|LINE|L1 762135 NM_020768 57528 Hs.661870 NM_020768 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 16-PTNLD14-TUMOR_peak_15822 chr4 27382541 27382600 + 6.36281 NA Intergenic L1PA2|LINE|L1 520257 NM_020860 57620 Hs.744950 NM_020860 HPRD:11609 STIM2 - stromal interaction molecule 2 protein-coding 16-PTNLD14-TUMOR_peak_23312 chrX 62403202 62403277 + 6.36281 NA Intergenic L1PA5|LINE|L1 167979 NM_001012968 139886 Hs.612782 NM_001012968 HPRD:12556 SPIN4 - spindlin family, member 4 protein-coding 16-PTNLD14-TUMOR_peak_2548 chr10 17874334 17874381 + 6.36281 NA intron (NM_002438, intron 3 of 29) AluY|SINE|Alu -12750 NR_030167 574445 NR_030167 MIR511 MIR511-1|MIR511-2|MIRN511-1|MIRN511-2|hsa-mir-511|hsa-mir-511-2 microRNA 511 ncRNA 16-PTNLD14-TUMOR_peak_8045 chr16 67267084 67267131 + 6.36281 NA intron (NM_013241, intron 13 of 21) AluSx|SINE|Alu 6091 NM_014187 29100 Hs.433203 NM_014187 HPRD:13710 TMEM208 - transmembrane protein 208 protein-coding 16-PTNLD14-TUMOR_peak_16122 chr4 74960797 74960844 + 6.36281 NA Intergenic AluY|SINE|Alu 4177 NM_002089 2920 Hs.75765 NM_002089 HPRD:00741 CXCL2 CINC-2a|GRO2|GROb|MGSA-b|MIP-2a|MIP2|MIP2A|SCYB2 chemokine (C-X-C motif) ligand 2 protein-coding 16-PTNLD14-TUMOR_peak_5914 chr13 22509048 22509095 + 6.36281 NA Intergenic AluSg|SINE|Alu -56772 NR_047040 100874182 Hs.148951 NR_047040 LINC00424 - long intergenic non-protein coding RNA 424 ncRNA 16-PTNLD14-TUMOR_peak_7028 chr15 55389520 55389606 + 6.36281 NA Intergenic L1PA5|LINE|L1 99668 NM_016304 51187 Hs.274772 NM_016304 RSL24D1 C15orf15|HRP-L30-iso|L30|RLP24|RPL24|RPL24L|TVAS3 ribosomal L24 domain containing 1 protein-coding 16-PTNLD14-TUMOR_peak_11122 chr2 7723458 7723543 + 6.36281 NA Intergenic (GGAA)n|Simple_repeat|Simple_repeat 162108 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 16-PTNLD14-TUMOR_peak_22389 chr9 118613984 118614031 + 6.36281 NA Intergenic AluSg|SINE|Alu 73370 NR_024032 58483 Hs.23367 NM_021208 LINC00474 C9orf27|EST-YD1 long intergenic non-protein coding RNA 474 ncRNA 16-PTNLD14-TUMOR_peak_5755 chr12 119145904 119145998 + 6.36281 NA Intergenic (TGG)n|Simple_repeat|Simple_repeat -273349 NM_194286 84530 Hs.744964 NM_194286 HPRD:13897 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 16-PTNLD14-TUMOR_peak_15810 chr4 22109028 22109075 + 6.36281 NA Intergenic L1PA2|LINE|L1 -158677 NM_147182 80333 Hs.655705 NM_025221 HPRD:12184 KCNIP4 CALP|KCHIP4 Kv channel interacting protein 4 protein-coding 16-PTNLD14-TUMOR_peak_12019 chr2 126964463 126964510 + 6.36281 NA Intergenic L1PA5|LINE|L1 -449025 NM_001256584 2995 Hs.59138 NM_002101 HPRD:00193 GYPC CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 16-PTNLD14-TUMOR_peak_16524 chr4 153543120 153543216 + 6.36281 NA Intergenic AluSx1|SINE|Alu 58149 NM_152680 201799 Hs.518900 NM_152680 TMEM154 - transmembrane protein 154 protein-coding 16-PTNLD14-TUMOR_peak_23423 chrX 73110699 73110771 + 6.36281 NA Intergenic L1PA2|LINE|L1 -38147 NR_001564 7503 Hs.529901 NR_001564 ENSG00000229807 XIST DXS1089|DXS399E|LINC00001|NCRNA00001|SXI1|swd66 X inactive specific transcript (non-protein coding) ncRNA 16-PTNLD14-TUMOR_peak_9639 chr18 67379464 67379544 + 6.36281 NA intron (NM_152721, intron 5 of 7) AluYa5|SINE|Alu 244728 NM_006566 10666 Hs.660130 NM_006566 HPRD:09252 CD226 DNAM-1|DNAM1|PTA1|TLiSA1 CD226 molecule protein-coding 16-PTNLD14-TUMOR_peak_910 chr1 84337331 84337384 + 6.36281 NA intron (NM_024686, intron 20 of 20) AluY|SINE|Alu -10678 NR_119375 101927587 Hs.621230 NR_119375 ENSG00000233008 LOC101927587 - uncharacterized LOC101927587 ncRNA 16-PTNLD14-TUMOR_peak_6957 chr15 42530656 42530703 + 6.36281 NA intron (NM_015497, intron 8 of 19) AluSz|SINE|Alu -30155 NM_015289 23339 Hs.88025 NM_015289 HPRD:10300 VPS39 TLP|VAM6|hVam6p vacuolar protein sorting 39 homolog (S. cerevisiae) protein-coding 16-PTNLD14-TUMOR_peak_7253 chr15 99435662 99435709 + 6.36020 NA intron (NM_001291858, intron 3 of 20) AluSz|SINE|Alu 108030 NR_039864 100616432 NR_039864 MIR4714 - microRNA 4714 ncRNA 16-PTNLD14-TUMOR_peak_22243 chr9 98896803 98896856 + 6.36020 NA Intergenic AluY|SINE|Alu -18136 NM_001256408 158434 Hs.381771 NM_001256408 LOC158434 - uncharacterized LOC158434 protein-coding 16-PTNLD14-TUMOR_peak_9541 chr18 45168795 45168842 + 6.36020 NA Intergenic L1PA3|LINE|L1 288152 NM_005901 4087 Hs.12253 NM_005901 HPRD:03221 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding 16-PTNLD14-TUMOR_peak_22586 chr9 133474554 133474617 + 6.36020 NA intron (NM_003934, intron 2 of 18) AluSc8|SINE|Alu 19625 NM_003934 8939 Hs.98751 NM_003934 ENSG00000107164 FUBP3 FBP3 far upstream element (FUSE) binding protein 3 protein-coding 16-PTNLD14-TUMOR_peak_17038 chr5 46354324 46354380 + 6.34326 NA Intergenic ALR/Alpha|Satellite|centr -658132 NM_021072 348980 Hs.353176 NM_021072 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide-gated potassium channel 1 protein-coding 16-PTNLD14-TUMOR_peak_22594 chr9 133551672 133551836 + 6.33509 NA intron (NM_021619, intron 3 of 4) AluY|SINE|Alu 11773 NM_021619 59335 Hs.495311 NM_021619 HPRD:17900 PRDM12 PFM9 PR domain containing 12 protein-coding 16-PTNLD14-TUMOR_peak_3655 chr11 9957228 9957277 + 6.33509 NA intron (NM_030962, intron 16 of 39) L1PA6|LINE|L1 96563 NR_120539 101928008 Hs.585524 NR_120539 ENSG00000255476 LOC101928008 - uncharacterized LOC101928008 ncRNA 16-PTNLD14-TUMOR_peak_7996 chr16 58271596 58271643 + 6.33509 NA Intergenic AluSx|SINE|Alu -12221 NM_001142302 29070 Hs.11614 NM_014157 HPRD:07121 CCDC113 - coiled-coil domain containing 113 protein-coding 16-PTNLD14-TUMOR_peak_15347 chr3 174548762 174548817 + 6.33509 NA Intergenic L1PA3|LINE|L1 -28322 NM_207015 254827 Hs.565848 NM_207015 HPRD:16388 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase-like 2 protein-coding 16-PTNLD14-TUMOR_peak_23414 chrX 72535501 72535549 + 6.33509 NA Intergenic L1P1|LINE|L1 -100815 NM_021963 4674 Hs.66180 NM_021963 HPRD:02066 NAP1L2 BPX nucleosome assembly protein 1-like 2 protein-coding 16-PTNLD14-TUMOR_peak_20498 chr7 155143228 155143277 + 6.32113 NA Intergenic CpG 17376 NR_103545 338436 Hs.521326 NR_103545 ENSG00000204960 BLACE - B-cell acute lymphoblastic leukemia expressed ncRNA 16-PTNLD14-TUMOR_peak_15535 chr3 196068832 196068886 + 6.32113 NA Intergenic AluSx1|SINE|Alu -3568 NM_001204898 116211 Hs.733264 NM_138461 HPRD:14013 TM4SF19 - transmembrane 4 L six family member 19 protein-coding 16-PTNLD14-TUMOR_peak_2517 chr10 17094504 17094551 + 6.32055 NA intron (NM_001081, intron 22 of 66) AluSx|SINE|Alu 77289 NM_001081 8029 Hs.166206 NM_001081 HPRD:04296 CUBN IFCR|MGA1|gp280 cubilin (intrinsic factor-cobalamin receptor) protein-coding 16-PTNLD14-TUMOR_peak_18196 chr6 16000943 16000990 + 6.32055 NA Intergenic AluSg|SINE|Alu -128351 NM_013262 29116 Hs.484738 NM_013262 HPRD:17621 MYLIP IDOL|MIR myosin regulatory light chain interacting protein protein-coding 16-PTNLD14-TUMOR_peak_3452 chr10 131375733 131375780 + 6.28409 NA intron (NM_002412, intron 2 of 4) L1PA4|LINE|L1 110302 NM_002412 4255 Hs.501522 NM_002412 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 16-PTNLD14-TUMOR_peak_24053 chrY 23319547 23319635 + 6.28341 NA Intergenic L1PA3|LINE|L1 228655 NM_001282471 100533178 NM_001282471 PRORY CYorf17 proline rich, Y-linked protein-coding 16-PTNLD14-TUMOR_peak_14616 chr3 61658337 61658384 + 6.28341 NA intron (NM_002841, intron 1 of 29) SVA_D|Other|Other 111117 NM_002841 5793 Hs.595541 NM_002841 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase, receptor type, G protein-coding 16-PTNLD14-TUMOR_peak_17865 chr5 167772241 167772288 + 6.28341 NA intron (NM_015238, intron 1 of 22) AluSz6|SINE|Alu 53199 NM_001161662 23286 Hs.484047 NM_015238 HPRD:10033 WWC1 HBEBP3|HBEBP36|KIBRA|MEMRYQTL|PPP1R168 WW and C2 domain containing 1 protein-coding 16-PTNLD14-TUMOR_peak_11503 chr2 65413243 65413290 + 6.28115 NA Intergenic AluSg|SINE|Alu -41563 NM_005722 10097 Hs.643727 NM_005722 HPRD:05023 ACTR2 ARP2 ARP2 actin-related protein 2 homolog (yeast) protein-coding 16-PTNLD14-TUMOR_peak_14572 chr3 52450780 52450827 + 6.27975 NA intron (NM_001278221, intron 3 of 8) AluY|SINE|Alu 3976 NM_001278221 51533 Hs.372719 NM_016483 HPRD:15127 PHF7 HSPC045|HSPC226|NYD-SP6 PHD finger protein 7 protein-coding 16-PTNLD14-TUMOR_peak_5488 chr12 70094430 70094484 + 6.24643 NA Intergenic AluSp|SINE|Alu -1261 NM_001282615 144453 Hs.280782 NM_032735 HPRD:17484 BEST3 VMD2L3 bestrophin 3 protein-coding 16-PTNLD14-TUMOR_peak_19048 chr6 148677422 148677497 + 6.24643 NA intron (NM_015278, intron 1 of 19) AluSx|SINE|Alu 13730 NM_015278 23328 Hs.193133 NM_015278 HPRD:06408 SASH1 SH3D6A|dJ323M4|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 16-PTNLD14-TUMOR_peak_5729 chr12 115146978 115147025 + 6.24184 NA Intergenic AluSx|SINE|Alu -25032 NM_005996 6926 Hs.744016 NM_005996 HPRD:03373 TBX3 TBX3-ISO|UMS|XHL T-box 3 protein-coding 16-PTNLD14-TUMOR_peak_1737 chr1 167788016 167788063 + 6.24184 NA intron (NM_001297772, intron 30 of 32) AluSq10|SINE|Alu 95425 NM_001167749 55811 Hs.320892 NM_018417 HPRD:05549 ADCY10 HCA2|SAC|SACI|Sacy|hsAC adenylate cyclase 10 (soluble) protein-coding 16-PTNLD14-TUMOR_peak_806 chr1 60961378 60961456 + 6.24184 NA Intergenic L1PA3|LINE|L1 329839 NR_110628 101926964 Hs.650459 NR_110628 ENSG00000231252 LOC101926964 - uncharacterized LOC101926964 ncRNA 16-PTNLD14-TUMOR_peak_14317 chr3 20261953 20262000 + 6.23304 NA Intergenic L1PA3|LINE|L1 -34252 NM_001199256 151648 Hs.105153 NM_138484 HPRD:12377 SGOL1 NY-BR-85|SGO|Sgo1 shugoshin-like 1 (S. pombe) protein-coding 16-PTNLD14-TUMOR_peak_23650 chrX 127820675 127820722 + 6.23304 NA Intergenic L1PA3|LINE|L1 -634316 NM_138289 139741 Hs.680125 NM_138289 HPRD:06439 ACTRT1 AIP1|ARIP1|ARPT1|HSD27 actin-related protein T1 protein-coding 16-PTNLD14-TUMOR_peak_7998 chr16 58280344 58280421 + 6.21615 NA Intergenic AluY|SINE|Alu -3458 NM_001142302 29070 Hs.11614 NM_014157 HPRD:07121 CCDC113 - coiled-coil domain containing 113 protein-coding 16-PTNLD14-TUMOR_peak_5544 chr12 88024367 88024420 + 6.20286 NA Intergenic L1PA3|LINE|L1 154095 NR_033410 400058 Hs.572212 NR_033410 MKRN9P MKRN5|MKRN9|MKRNP6|RNF65|ZNF127L3 makorin ring finger protein 9, pseudogene pseudo 16-PTNLD14-TUMOR_peak_7178 chr15 83275425 83275537 + 6.20286 NA intron (NM_030594, intron 2 of 11) AluYa5|SINE|Alu -34908 NM_001079533 64506 Hs.459132 NM_030594 HPRD:09553 CPEB1 CEBP|CPE-BP1|CPEB|CPEB-1|hCPEB-1 cytoplasmic polyadenylation element binding protein 1 protein-coding 16-PTNLD14-TUMOR_peak_3465 chr10 131917233 131917374 + 6.20286 NA Intergenic AluYb8|SINE|Alu -8222 NR_034125 387723 Hs.127394 NR_034125 LINC00959 - long intergenic non-protein coding RNA 959 ncRNA 16-PTNLD14-TUMOR_peak_1397 chr1 149034149 149034203 + 6.20286 NA intron (NR_104217, intron 2 of 17) HSATII|Satellite|Satellite 75549 NR_104217 101929780 Hs.534675 NR_104217 NBPF25P WI2-925H4.1 neuroblastoma breakpoint family, member 25, pseudogene pseudo 16-PTNLD14-TUMOR_peak_22216 chr9 96785627 96785682 + 6.20286 NA Intergenic L1PA3|LINE|L1 -7422 NM_177995 138639 Hs.437943 NM_152422 HPRD:06689 PTPDC1 PTP9Q22 protein tyrosine phosphatase domain containing 1 protein-coding 16-PTNLD14-TUMOR_peak_14790 chr3 96205442 96205489 + 6.18331 NA Intergenic AluY|SINE|Alu 126657 NR_107027 102465864 NR_107027 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 16-PTNLD14-TUMOR_peak_2488 chr10 14244589 14244636 + 6.18331 NA intron (NM_018027, intron 2 of 24) AluSz|SINE|Alu 128254 NM_018027 55691 Hs.330463 NM_018027 HPRD:13553 FRMD4A FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 16-PTNLD14-TUMOR_peak_6671 chr14 86296896 86296946 + 6.18331 NA Intergenic SVA_D|Other|Other -104101 NR_110155 101928767 Hs.536380 NR_110155 LOC101928767 - uncharacterized LOC101928767 ncRNA 16-PTNLD14-TUMOR_peak_2549 chr10 18121287 18121334 + 6.18331 NA intron (NM_002438, intron 4 of 29) AluY|SINE|Alu -12726 NR_030167 574445 NR_030167 MIR511 MIR511-1|MIR511-2|MIRN511-1|MIRN511-2|hsa-mir-511|hsa-mir-511-2 microRNA 511 ncRNA 16-PTNLD14-TUMOR_peak_5573 chr12 95326294 95326364 + 6.16516 NA Intergenic AluSq2|SINE|Alu 71160 NM_018838 55967 Hs.506374 NM_018838 HPRD:16781 NDUFA12 B17.2|DAP13 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12 protein-coding 16-PTNLD14-TUMOR_peak_1800 chr1 175397038 175397085 + 6.16516 NA intron (NM_003285, intron 2 of 22) (TTCC)n|Simple_repeat|Simple_repeat -234832 NM_001162894 9674 Hs.518138 NM_014656 HPRD:13776 KIAA0040 - KIAA0040 protein-coding 16-PTNLD14-TUMOR_peak_6205 chr13 114579239 114579291 + 6.16516 NA Intergenic (GTGTG)n|Simple_repeat|Simple_repeat 12115 NR_044993 100506394 Hs.132168 NR_044993 ENSG00000272695 GAS6-AS2 - GAS6 antisense RNA 2 (head to head) ncRNA 16-PTNLD14-TUMOR_peak_4524 chr11 93828298 93828356 + 6.16516 NA intron (NM_001098672, intron 13 of 19) L1PA5|LINE|L1 -33767 NM_015368 24145 Hs.591976 NM_015368 HPRD:10526 PANX1 MRS1|PX1|UNQ2529 pannexin 1 protein-coding 16-PTNLD14-TUMOR_peak_8140 chr16 73033152 73033304 + 6.16516 NA intron (NM_006885, intron 1 of 9) AluSz|SINE|Alu 49046 NM_006885 463 Hs.598297 NM_006885 HPRD:00075 ZFHX3 ATBF1|ATBT|ZNF927 zinc finger homeobox 3 protein-coding 16-PTNLD14-TUMOR_peak_18879 chr6 94483579 94483626 + 6.16516 NA intron (NR_015362, intron 8 of 9) AluY|SINE|Alu 66801 NR_015362 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 16-PTNLD14-TUMOR_peak_15044 chr3 132515696 132515743 + 6.16516 NA intron (NR_002811, intron 4 of 10) L1PA4|LINE|L1 -74416 NR_037804 100532724 Hs.511991 NR_037804 NPHP3-ACAD11 - NPHP3-ACAD11 readthrough (NMD candidate) ncRNA 16-PTNLD14-TUMOR_peak_22561 chr9 132579912 132579959 + 6.13384 NA intron (NM_000113, intron 4 of 4) AluY|SINE|Alu 6506 NM_000113 1861 Hs.534312 NM_000113 HPRD:06897 TOR1A DQ2|DYT1 torsin family 1, member A (torsin A) protein-coding 16-PTNLD14-TUMOR_peak_4165 chr11 62843160 62843212 + 6.12754 NA Intergenic L1PA3|LINE|L1 -59869 NM_001184736 9376 Hs.266223 NM_004254 ENSG00000149452 SLC22A8 OAT3 solute carrier family 22 (organic anion transporter), member 8 protein-coding 16-PTNLD14-TUMOR_peak_19932 chr7 87601780 87601865 + 6.12754 NA intron (NM_004194, intron 2 of 28) L1PA4|LINE|L1 38256 NM_016351 53616 Hs.256398 NM_004194 HPRD:04751 ADAM22 ADAM 22|MDC2 ADAM metallopeptidase domain 22 protein-coding 16-PTNLD14-TUMOR_peak_244 chr1 19220191 19220276 + 6.12754 NA intron (NM_170726, intron 1 of 15) AluSx1|SINE|Alu -2848 NM_001161504 8659 Hs.77448 NM_003748 HPRD:06009 ALDH4A1 ALDH4|P5CD|P5CDh aldehyde dehydrogenase 4 family, member A1 protein-coding 16-PTNLD14-TUMOR_peak_18823 chr6 87587952 87588041 + 6.12754 NA Intergenic L1PA3|LINE|L1 -59028 NM_000865 3354 Hs.1611 NM_000865 HPRD:01635 HTR1E 5-HT1E 5-hydroxytryptamine (serotonin) receptor 1E, G protein-coupled protein-coding 16-PTNLD14-TUMOR_peak_11819 chr2 96880729 96880776 + 6.11819 NA intron (NR_046322, intron 1 of 3) AluSx|SINE|Alu -6179 NM_020151 56910 Hs.469331 NM_020151 HPRD:18118 STARD7 GTT1 StAR-related lipid transfer (START) domain containing 7 protein-coding 16-PTNLD14-TUMOR_peak_19599 chr7 58001115 58001215 + 6.11187 NA Intergenic ALR/Alpha|Satellite|centr 491282 NM_001159279 441234 Hs.533121 NM_001159279 ENSG00000182111 ZNF716 - zinc finger protein 716 protein-coding 16-PTNLD14-TUMOR_peak_14971 chr3 126195086 126195133 + 6.09435 NA promoter-TSS (NR_104249) promoter-TSS (NR_104249) -347 NM_025112 79364 Hs.440049 NM_025112 HPRD:14420 ZXDC ZXDL ZXD family zinc finger C protein-coding 16-PTNLD14-TUMOR_peak_19047 chr6 148676107 148676160 + 6.09374 NA intron (NM_015278, intron 1 of 19) AluSx|SINE|Alu 12404 NM_015278 23328 Hs.193133 NM_015278 HPRD:06408 SASH1 SH3D6A|dJ323M4|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 16-PTNLD14-TUMOR_peak_18722 chr6 65370256 65370307 + 6.09007 NA intron (NM_001292009, intron 22 of 43) L1PA4|LINE|L1 -641030 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 16-PTNLD14-TUMOR_peak_614 chr1 43612590 43612639 + 6.09007 NA promoter-TSS (NM_001101376) promoter-TSS (NM_001101376) -980 NM_001101376 440585 Hs.657614 NM_001101376 ENSG00000186973 FAM183A - family with sequence similarity 183, member A protein-coding 16-PTNLD14-TUMOR_peak_18340 chr6 29863985 29864056 + 6.09007 NA Intergenic SVA_C|Other|Other 8483 NR_001434 3136 Hs.728808 NR_001434 HLA-H HLAHP major histocompatibility complex, class I, H (pseudogene) pseudo 16-PTNLD14-TUMOR_peak_8150 chr16 73861390 73861438 + 6.08674 NA Intergenic L1PA2|LINE|L1 388006 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 16-PTNLD14-TUMOR_peak_16146 chr4 78607817 78607864 + 6.08674 NA Intergenic L1PA3|LINE|L1 132704 NM_001286790 246175 Hs.592519 NM_144571 HPRD:10841 CNOT6L CCR4b CCR4-NOT transcription complex, subunit 6-like protein-coding 16-PTNLD14-TUMOR_peak_12736 chr2 237107967 237108022 + 6.08674 NA intron (NM_212556, intron 4 of 5) AluSx|SINE|Alu -31342 NM_001485 2637 Hs.184945 NM_001485 HPRD:03087 GBX2 - gastrulation brain homeobox 2 protein-coding 16-PTNLD14-TUMOR_peak_23545 chrX 100800288 100800335 + 6.05349 NA Intergenic L1PA3|LINE|L1 -5203 NM_016608 51309 Hs.9728 NM_016608 HPRD:02292 ARMCX1 ALEX1|GASP7 armadillo repeat containing, X-linked 1 protein-coding 16-PTNLD14-TUMOR_peak_3197 chr10 94608227 94608293 + 6.05349 NA promoter-TSS (NM_019053) promoter-TSS (NM_019053) 35 NM_019053 54536 Hs.655657 NM_019053 HPRD:10216 EXOC6 EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p exocyst complex component 6 protein-coding 16-PTNLD14-TUMOR_peak_19041 chr6 148648832 148648908 + 6.04242 NA Intergenic AluSx|SINE|Alu -14859 NM_015278 23328 Hs.193133 NM_015278 HPRD:06408 SASH1 SH3D6A|dJ323M4|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 16-PTNLD14-TUMOR_peak_3758 chr11 19936145 19936280 + 6.03880 NA intron (NM_182964, intron 6 of 37) AluYb8|SINE|Alu -107890 NM_001111019 89797 Hs.64341 NM_145117 HPRD:07385 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 16-PTNLD14-TUMOR_peak_4755 chr11 129442642 129442721 + 6.03880 NA Intergenic L1PA6|LINE|L1 44483 NR_120582 101929557 Hs.385785 NR_120582 LINC01395 - long intergenic non-protein coding RNA 1395 ncRNA 16-PTNLD14-TUMOR_peak_16312 chr4 117769639 117769687 + 6.03880 NA Intergenic L1PA5|LINE|L1 237073 NM_152402 133022 Hs.570737 NM_152402 HPRD:11643 TRAM1L1 - translocation associated membrane protein 1-like 1 protein-coding 16-PTNLD14-TUMOR_peak_14371 chr3 26280882 26280930 + 6.03880 NA Intergenic L1PA3|LINE|L1 -365720 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 16-PTNLD14-TUMOR_peak_17402 chr5 99232835 99232882 + 6.03880 NA Intergenic L1PA2|LINE|L1 363164 NR_110562 102724855 Hs.519477 NR_110562 CTD-2151A2.1 - uncharacterized LOC102724855 ncRNA 16-PTNLD14-TUMOR_peak_5337 chr12 54674013 54674067 + 6.02502 NA promoter-TSS (NM_002136) promoter-TSS (NM_002136) -125 NM_012117 23468 Hs.349283 NM_012117 HPRD:05131 CBX5 HEL25|HP1|HP1A chromobox homolog 5 protein-coding 16-PTNLD14-TUMOR_peak_23637 chrX 125520592 125520694 + 6.01813 NA Intergenic L1PA4|LINE|L1 166199 NM_178470 139170 Hs.120403 NM_178470 HPRD:06604 DCAF12L1 KIAA1892L|WDR40B DDB1 and CUL4 associated factor 12-like 1 protein-coding 16-PTNLD14-TUMOR_peak_10589 chr19 42741573 42741620 + 6.01752 NA intron (NM_019884, intron 2 of 10) AluSc5|SINE|Alu 5140 NM_019884 2931 Hs.466828 NM_019884 HPRD:06002 GSK3A - glycogen synthase kinase 3 alpha protein-coding 16-PTNLD14-TUMOR_peak_22138 chr9 85843097 85843152 + 6.00901 NA Intergenic L1PA2|LINE|L1 39078 NM_001244962 257019 Hs.127535 NM_174938 HPRD:07402 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 16-PTNLD14-TUMOR_peak_7982 chr16 58138134 58138181 + 6.00604 NA Intergenic AluSx1|SINE|Alu 25139 NM_013242 29105 Hs.532755 NM_013242 HPRD:13616 CFAP20 C16orf80|EVORF|GTL3|fSAP23 cilia and flagella associated protein 20 protein-coding 16-PTNLD14-TUMOR_peak_19462 chr7 36236762 36236888 + 5.99230 NA intron (NM_030636, intron 2 of 7) SVA_D|Other|Other 43989 NM_030636 80820 Hs.487994 NM_030636 HPRD:13884 EEPD1 HSPC107 endonuclease/exonuclease/phosphatase family domain containing 1 protein-coding 16-PTNLD14-TUMOR_peak_1814 chr1 178730348 178730506 + 5.99230 NA intron (NM_001286247, intron 1 of 18) L1PA16|LINE|L1 36145 NM_152663 55103 Hs.632485 NM_018037 HPRD:15206 RALGPS2 dJ595C2.1 Ral GEF with PH domain and SH3 binding motif 2 protein-coding 16-PTNLD14-TUMOR_peak_10644 chr19 46232162 46232209 + 5.99230 NA intron (NM_001080469, intron 1 of 1) AluSx|SINE|Alu 1966 NM_001080469 23403 Hs.128702 NM_001080469 ENSG00000177051 FBXO46 20D7-FC4|FBXO34L|Fbx46 F-box protein 46 protein-coding 16-PTNLD14-TUMOR_peak_18766 chr6 76599312 76599360 + 5.99230 NA intron (NM_001300899, intron 25 of 32) AluSx|SINE|Alu 140427 NM_004999 4646 Hs.149387 NM_004999 HPRD:02985 MYO6 DFNA22|DFNB37 myosin VI protein-coding 16-PTNLD14-TUMOR_peak_10385 chr19 34538060 34538176 + 5.98103 NA Intergenic AluYk4|SINE|Alu -125234 NM_015578 26065 Hs.744009 NM_015578 HPRD:12697 LSM14A C19orf13|FAM61A|RAP55|RAP55A LSM14A, SCD6 homolog A (S. cerevisiae) protein-coding 16-PTNLD14-TUMOR_peak_19065 chr6 148731012 148731059 + 5.98103 NA intron (NM_015278, intron 2 of 19) AluSg|SINE|Alu 67306 NM_015278 23328 Hs.193133 NM_015278 HPRD:06408 SASH1 SH3D6A|dJ323M4|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 16-PTNLD14-TUMOR_peak_1396 chr1 149025220 149025268 + 5.96640 NA intron (NR_104217, intron 2 of 17) MER54A|LTR|ERVL 84481 NR_104217 101929780 Hs.534675 NR_104217 NBPF25P WI2-925H4.1 neuroblastoma breakpoint family, member 25, pseudogene pseudo 16-PTNLD14-TUMOR_peak_21007 chr8 55135041 55135112 + 5.94689 NA Intergenic Intergenic 87295 NM_014175 29088 Hs.18349 NM_014175 MRPL15 L15mt|MRP-L15|MRP-L7|RPML7 mitochondrial ribosomal protein L15 protein-coding 16-PTNLD14-TUMOR_peak_7523 chr16 14715541 14715589 + 5.94545 NA intron (NM_001134477, intron 5 of 23) AluY|SINE|Alu 8563 NM_002582 5073 Hs.253197 NM_002582 HPRD:07250 PARN DAN poly(A)-specific ribonuclease protein-coding 16-PTNLD14-TUMOR_peak_19744 chr7 65757083 65757130 + 5.94545 NA intron (NM_003596, intron 3 of 5) L1HS|LINE|L1 86847 NM_003596 8460 Hs.421194 NM_003596 HPRD:07216 TPST1 TANGO13A tyrosylprotein sulfotransferase 1 protein-coding 16-PTNLD14-TUMOR_peak_24131 chrY 58989310 58989463 + 5.94545 NA Intergenic BSR/Beta|Satellite|Satellite -111071 NM_005840 10251 Hs.381912 NM_005840 HPRD:03917 SPRY3 HSPRY3|spry-3 sprouty homolog 3 (Drosophila) protein-coding 16-PTNLD14-TUMOR_peak_19922 chr7 86153845 86153892 + 5.94545 NA Intergenic L1PA4|LINE|L1 -119362 NM_000840 2913 Hs.590575 NM_000840 HPRD:03070 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate receptor, metabotropic 3 protein-coding 16-PTNLD14-TUMOR_peak_9967 chr19 11759886 11759946 + 5.94545 NA Intergenic AluYk4|SINE|Alu -24897 NR_028594 401898 Hs.672384 NM_001013691 ZNF833P ZNF833 zinc finger protein 833, pseudogene pseudo 16-PTNLD14-TUMOR_peak_12544 chr2 206904353 206904444 + 5.94545 NA intron (NM_017759, intron 5 of 10) AluSx|SINE|Alu 46508 NM_017759 54891 Hs.445036 NM_017759 HPRD:07894 INO80D - INO80 complex subunit D protein-coding 16-PTNLD14-TUMOR_peak_9171 chr17 75277510 75277582 + 5.92144 NA promoter-TSS (NM_001113491) promoter-TSS (NM_001113491) 54 NM_001293695 10801 Hs.440932 NM_006640 HPRD:10360 SEPT9 AF17q25|MSF|MSF1|NAPB|PNUTL4|SINT1|SeptD1 septin 9 protein-coding 16-PTNLD14-TUMOR_peak_23673 chrX 133899407 133899456 + 5.90036 NA Intergenic AluSc|SINE|Alu 30954 NM_001170756 159090 Hs.404706 NM_145284 HPRD:06614 FAM122B SPACIA2 family with sequence similarity 122B protein-coding 16-PTNLD14-TUMOR_peak_22509 chr9 130922400 130922447 + 5.90036 NA promoter-TSS (NM_024112) promoter-TSS (NM_024112) -116 NM_024112 79095 Hs.522412 NM_024112 HPRD:12946 C9orf16 EST00098 chromosome 9 open reading frame 16 protein-coding 16-PTNLD14-TUMOR_peak_12780 chr2 242636742 242636795 + 5.90036 NA Intergenic AluY|SINE|Alu -4688 NM_032329 84289 Hs.529172 NM_032329 HPRD:16348 ING5 p28ING5 inhibitor of growth family, member 5 protein-coding 16-PTNLD14-TUMOR_peak_19280 chr7 4134781 4134855 + 5.90036 NA intron (NM_152744, intron 22 of 44) LTR39|LTR|ERV1 -34499 NM_001079653 221935 Hs.653013 NM_152744 HPRD:07388 SDK1 - sidekick cell adhesion molecule 1 protein-coding 16-PTNLD14-TUMOR_peak_17306 chr5 81751088 81751135 + 5.90036 NA Intergenic L1PA6|LINE|L1 175830 NM_001017971 92270 Hs.729805 NM_001017971 HPRD:18710 ATP6AP1L - ATPase, H+ transporting, lysosomal accessory protein 1-like protein-coding 16-PTNLD14-TUMOR_peak_988 chr1 93764269 93764326 + 5.90036 NA Intergenic AluSx1|SINE|Alu 47071 NR_034089 100131564 Hs.732666 NR_034089 LOC100131564 - uncharacterized LOC100131564 ncRNA 16-PTNLD14-TUMOR_peak_21199 chr8 99274665 99274712 + 5.90036 NA intron (NM_024759, intron 1 of 11) L1PA2|LINE|L1 31933 NM_024759 79815 Hs.309489 NM_024759 NIPAL2 NPAL2 NIPA-like domain containing 2 protein-coding 16-PTNLD14-TUMOR_peak_20661 chr8 6988214 6988376 + 5.90036 NA Intergenic AluSg|SINE|Alu -74036 NM_021010 1670 Hs.655233 NM_021010 HPRD:02720 DEFA5 DEF5|HD-5 defensin, alpha 5, Paneth cell-specific protein-coding 16-PTNLD14-TUMOR_peak_10473 chr19 37667972 37668019 + 5.90036 NA Intergenic AluSp|SINE|Alu -4352 NM_152655 199704 Hs.659236 NM_152655 HPRD:15862 ZNF585A - zinc finger protein 585A protein-coding 16-PTNLD14-TUMOR_peak_14593 chr3 56841946 56842096 + 5.90036 NA intron (NM_001289698, intron 2 of 10) AluSx1|SINE|Alu -6026 NM_019555 50650 Hs.476402 NM_019555 HPRD:12480 ARHGEF3 GEF3|STA3|XPLN Rho guanine nucleotide exchange factor (GEF) 3 protein-coding 16-PTNLD14-TUMOR_peak_4652 chr11 117118837 117118894 + 5.89873 NA intron (NM_001077239, intron 6 of 14) AluY|SINE|Alu 15413 NM_001077239 257160 Hs.591934 NM_207343 HPRD:16815 RNF214 - ring finger protein 214 protein-coding 16-PTNLD14-TUMOR_peak_902 chr1 84151416 84151484 + 5.89686 NA intron (NR_119375, intron 2 of 2) L1PA4|LINE|L1 174779 NR_119374 101927560 Hs.559661 NR_119374 ENSG00000233008 LOC101927560 - uncharacterized LOC101927560 ncRNA 16-PTNLD14-TUMOR_peak_23139 chrX 33138729 33138798 + 5.87483 NA intron (NM_000109, intron 1 of 78) AluSx|SINE|Alu 7781 NM_004010 1756 Hs.495912 NM_000109 HPRD:02303 DMD BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272|MRX85 dystrophin protein-coding 16-PTNLD14-TUMOR_peak_17672 chr5 140472649 140472710 + 5.87483 NA Intergenic AluSc|SINE|Alu -1512 NM_018936 56133 Hs.533023 NM_018936 HPRD:07558 PCDHB2 PCDH-BETA2 protocadherin beta 2 protein-coding 16-PTNLD14-TUMOR_peak_11715 chr2 90482924 90483024 + 5.87476 NA Intergenic (GCTG)n|Simple_repeat|Simple_repeat 1365001 NR_027238 654342 Hs.469287 NR_027238 ENSG00000143429 LOC654342 - lymphocyte-specific protein 1 pseudogene pseudo 16-PTNLD14-TUMOR_peak_22811 chrUn_gl000216 62876 62934 + 5.86865 NA NA (CATTC)n|Satellite|Satellite NA NA 16-PTNLD14-TUMOR_peak_801 chr1 60113789 60113836 + 5.85589 NA intron (NM_001113411, intron 12 of 16) L1PA2|LINE|L1 85156 NR_039861 100616409 NR_039861 miRBase:MI0017345 MIR4711 - microRNA 4711 ncRNA 16-PTNLD14-TUMOR_peak_663 chr1 45598945 45599034 + 5.85589 NA intron (NM_020883, intron 1 of 13) L1PA5|LINE|L1 73261 NM_020883 57643 Hs.656613 NM_020883 ENSG00000162415 ZSWIM5 - zinc finger, SWIM-type containing 5 protein-coding 16-PTNLD14-TUMOR_peak_7159 chr15 82655536 82655625 + 5.85589 NA intron (NR_004847, intron 1 of 4).2 AluSx|SINE|Alu 8226 NR_004847 100134869 Hs.735222 NR_004847 UBE2Q2P2 UBE2Q2P3|UBE2QP2 ubiquitin-conjugating enzyme E2Q family member 2 pseudogene 2 pseudo 16-PTNLD14-TUMOR_peak_21737 chr9 21640175 21640398 + 5.85589 NA Intergenic AluYa5|SINE|Alu -80589 NR_027054 554202 Hs.458096 NR_027054 MIR31HG - MIR31 host gene (non-protein coding) ncRNA 16-PTNLD14-TUMOR_peak_4298 chr11 67634216 67634289 + 5.85440 NA Intergenic L1PA4|LINE|L1 -61445 NR_024249 645332 Hs.535094 NR_024249 ENSG00000160172 FAM86C2P - family with sequence similarity 86, member A pseudogene pseudo 16-PTNLD14-TUMOR_peak_9158 chr17 74522869 74522988 + 5.85153 NA promoter-TSS (NR_033357) promoter-TSS (NR_033357) -740 NR_033357 768206 Hs.634380 NM_001077620 PRCD RP36 progressive rod-cone degeneration protein-coding 16-PTNLD14-TUMOR_peak_508 chr1 36632216 36632279 + 5.85153 NA intron (NM_001286365, intron 1 of 15) AluSc8|SINE|Alu -10593 NM_001270895 27095 Hs.523131 NM_014408 HPRD:11644 TRAPPC3 BET3 trafficking protein particle complex 3 protein-coding 16-PTNLD14-TUMOR_peak_18701 chr6 58780064 58780127 + 5.84969 NA Intergenic ALR/Alpha|Satellite|centr -492371 NR_125728 375513 Hs.561539 NM_206908 GUSBP4 C6orf216|GUSBL2|SMA3-L|SMAC3L|b55C20.2 glucuronidase, beta pseudogene 4 pseudo 16-PTNLD14-TUMOR_peak_8073 chr16 68197658 68197705 + 5.84053 NA intron (NM_004555, intron 4 of 10) SVA_D|Other|Other 69721 NR_106831 102466194 NR_106831 MIR6773 hsa-mir-6773 microRNA 6773 ncRNA 16-PTNLD14-TUMOR_peak_9391 chr18 12202801 12202859 + 5.84053 NA intron (NR_049896, intron 2 of 4) L1PA2|LINE|L1 2052 NR_049896 497259 Hs.451609 NR_049896 C18orf61 - uncharacterized LOC497259 ncRNA 16-PTNLD14-TUMOR_peak_490 chr1 36570155 36570204 + 5.82792 NA intron (NM_001294347, intron 2 of 3) AluY|SINE|Alu 15726 NM_017825 54936 Hs.18021 NM_017825 HPRD:12432 ADPRHL2 ARH3 ADP-ribosylhydrolase like 2 protein-coding 16-PTNLD14-TUMOR_peak_14795 chr3 97895239 97895286 + 5.81142 NA Intergenic L1PA4|LINE|L1 7718 NM_001005515 403274 Hs.554713 NM_001005515 HPRD:17760 OR5H15 - olfactory receptor, family 5, subfamily H, member 15 protein-coding 16-PTNLD14-TUMOR_peak_22465 chr9 127172467 127172514 + 5.81142 NA intron (NM_002799, intron 4 of 7) AluY|SINE|Alu 5262 NM_002799 5695 Hs.213470 NM_002799 HPRD:04940 PSMB7 Z proteasome (prosome, macropain) subunit, beta type, 7 protein-coding 16-PTNLD14-TUMOR_peak_11176 chr2 16415624 16415671 + 5.81142 NA Intergenic L1PA3|LINE|L1 -333802 NR_110230 10408 Hs.651453 NM_006316 ENSG00000233718 MYCNOS MYCN-AS1|N-CYM|NCYM|NYCM MYCN opposite strand ncRNA 16-PTNLD14-TUMOR_peak_13313 chr20 53401327 53401374 + 5.80677 NA Intergenic L1PA3|LINE|L1 309093 NM_177959 55816 Hs.473133 NM_018431 HPRD:16317 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 16-PTNLD14-TUMOR_peak_15528 chr3 196020606 196020654 + 5.77891 NA intron (NM_152773, intron 4 of 4) AluSc|SINE|Alu -6046 NM_005017 5130 Hs.135997 NM_005017 HPRD:00438 PCYT1A CCTA|CT|CTA|CTPCT|PCYT1|SMDCRD phosphate cytidylyltransferase 1, choline, alpha protein-coding 16-PTNLD14-TUMOR_peak_856 chr1 71060881 71060928 + 5.77227 NA Intergenic L1PA3|LINE|L1 184003 NM_001902 1491 Hs.19904 NM_001902 HPRD:09633 CTH - cystathionine gamma-lyase protein-coding 16-PTNLD14-TUMOR_peak_23038 chrX 1827849 1827965 + 5.76866 NA Intergenic L1PA2|LINE|L1 93881 NM_001171039 438 Hs.522572 NM_004043 HPRD:02058 ASMT ASMTY|HIOMT|HIOMTY acetylserotonin O-methyltransferase protein-coding 16-PTNLD14-TUMOR_peak_17775 chr5 149592306 149592353 + 5.76866 NA Intergenic AluSc8|SINE|Alu 22809 NM_014228 6534 Hs.241597 NM_014228 HPRD:09371 SLC6A7 PROT solute carrier family 6 (neurotransmitter transporter), member 7 protein-coding 16-PTNLD14-TUMOR_peak_7107 chr15 73824406 73824503 + 5.76866 NA intron (NM_001042367, intron 2 of 5) L1PA2|LINE|L1 37430 NR_103844 101241892 Hs.656678 NR_103844 NPTN-IT1 lncRNA-LET NPTN intronic transcript 1 (non-protein coding) ncRNA 16-PTNLD14-TUMOR_peak_4476 chr11 81870803 81870865 + 5.76866 NA intron (NR_120571, intron 3 of 7) L1HS|LINE|L1 244121 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 LOC101928989 - uncharacterized LOC101928989 ncRNA 16-PTNLD14-TUMOR_peak_22470 chr9 127184692 127184788 + 5.75242 NA Intergenic AluSx|SINE|Alu -6988 NM_002799 5695 Hs.213470 NM_002799 HPRD:04940 PSMB7 Z proteasome (prosome, macropain) subunit, beta type, 7 protein-coding 16-PTNLD14-TUMOR_peak_23887 chrY 13447137 13447196 + 5.75149 NA Intergenic (CATTC)n|Simple_repeat|Simple_repeat 1086223 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 16-PTNLD14-TUMOR_peak_3618 chr11 6211383 6211430 + 5.72499 NA Intergenic L1PA2|LINE|L1 -9048 NM_001005178 120787 Hs.553570 NM_001005178 HPRD:15025 OR52W1 OR11-71|OR52W1P olfactory receptor, family 52, subfamily W, member 1 protein-coding 16-PTNLD14-TUMOR_peak_21538 chr8 142502628 142502711 + 5.71586 NA intron (NR_102363, intron 3 of 27) intron (NR_102363, intron 3 of 27) 14661 NM_207414 389690 Hs.689547 NM_207414 HPRD:13480 MROH5 - maestro heat-like repeat family member 5 protein-coding 16-PTNLD14-TUMOR_peak_2881 chr10 42805954 42806004 + 5.71098 NA Intergenic (CATTC)n|Satellite|Satellite 57514 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 16-PTNLD14-TUMOR_peak_22141 chr9 85898214 85898270 + 5.70557 NA intron (NM_001244960, intron 13 of 13) AluY|SINE|Alu -16040 NM_001244962 257019 Hs.127535 NM_174938 HPRD:07402 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 16-PTNLD14-TUMOR_peak_5091 chr12 27467144 27467209 + 5.69821 NA intron (NM_015000, intron 6 of 13) AluSz6|SINE|Alu -18611 NM_001248005 56938 Hs.445447 NM_020183 ARNTL2 BMAL2|CLIF|MOP9|PASD9|bHLHe6 aryl hydrocarbon receptor nuclear translocator-like 2 protein-coding 16-PTNLD14-TUMOR_peak_7172 chr15 83032033 83032118 + 5.68301 NA intron (NR_004847, intron 1 of 4) AluSx|SINE|Alu 8234 NR_004847 100134869 Hs.735222 NR_004847 UBE2Q2P2 UBE2Q2P3|UBE2QP2 ubiquitin-conjugating enzyme E2Q family member 2 pseudogene 2 pseudo 16-PTNLD14-TUMOR_peak_934 chr1 87097392 87097439 + 5.68301 NA Intergenic L1P1|LINE|L1 -2544 NR_024604 9629 Hs.673847 NM_004921 HPRD:05065 CLCA3P CLCA3 chloride channel accessory 3, pseudogene pseudo 16-PTNLD14-TUMOR_peak_9032 chr17 61419910 61420034 + 5.68301 NA intron (NM_025185, intron 10 of 24) AluY|SINE|Alu 98235 NM_001017917 1534 Hs.355264 NM_001915 HPRD:02485 CYB561 CYB561A1|FRRS2 cytochrome b561 protein-coding 16-PTNLD14-TUMOR_peak_11195 chr2 21072760 21072807 + 5.68301 NA Intergenic L1P1|LINE|L1 -49893 NM_001282722 60526 Hs.187823 NM_021925 HPRD:07113 C2orf43 - chromosome 2 open reading frame 43 protein-coding 16-PTNLD14-TUMOR_peak_18309 chr6 27453118 27453317 + 5.67270 NA Intergenic SVA_F|Other|Other -12320 NM_007149 7738 Hs.158174 NM_007149 HPRD:03785 ZNF184 - zinc finger protein 184 protein-coding 16-PTNLD14-TUMOR_peak_17883 chr5 167894153 167894205 + 5.67196 NA intron (NM_001161662, intron 21 of 22) AluY|SINE|Alu -19284 NM_002887 5917 Hs.654907 NM_002887 HPRD:00142 RARS ArgRS|DALRD1 arginyl-tRNA synthetase protein-coding 16-PTNLD14-TUMOR_peak_15774 chr4 14422580 14422650 + 5.66888 NA Intergenic L1PA4|LINE|L1 309023 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 16-PTNLD14-TUMOR_peak_10286 chr19 24622836 24622891 + 5.65260 NA Intergenic ALR/Alpha|Satellite|centr -276614 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 16-PTNLD14-TUMOR_peak_9010 chr17 61123886 61123948 + 5.64100 NA intron (NM_025185, intron 1 of 24) AluSq|SINE|Alu 37019 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 16-PTNLD14-TUMOR_peak_24050 chrY 23170919 23170966 + 5.64100 NA Intergenic L1PA2|LINE|L1 252988 NM_001039567 140032 Hs.367761 NM_001039567 HPRD:15960 RPS4Y2 RPS4Y2P ribosomal protein S4, Y-linked 2 protein-coding 16-PTNLD14-TUMOR_peak_17127 chr5 56866695 56866742 + 5.64100 NA intron (NR_120607, intron 1 of 5) AluY|SINE|Alu 549 NR_120607 100996645 Hs.582496 NR_120607 ENSG00000249436 LINCR-0003 - uncharacterized LincR-0003 ncRNA 16-PTNLD14-TUMOR_peak_18193 chr6 15907285 15907333 + 5.61791 NA Intergenic AluSx|SINE|Alu -222008 NM_013262 29116 Hs.484738 NM_013262 HPRD:17621 MYLIP IDOL|MIR myosin regulatory light chain interacting protein protein-coding 16-PTNLD14-TUMOR_peak_19234 chr7 591642 591903 + 5.61791 NA intron (NM_001164759, intron 9 of 10) C-rich|Low_complexity|Low_complexity 31744 NR_033963 441307 Hs.521334 NR_033963 FLJ44511 - uncharacterized LOC441307 ncRNA 16-PTNLD14-TUMOR_peak_20924 chr8 43823222 43823295 + 5.60793 NA Intergenic ALR/Alpha|Satellite|centr 675673 NM_001005365 340441 Hs.531579 NM_001002920 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family, member A protein-coding 16-PTNLD14-TUMOR_peak_22514 chr9 131082277 131082332 + 5.60653 NA intron (NM_015679, intron 2 of 7) AluY|SINE|Alu 2393 NM_015679 26995 Hs.632685 NM_015679 HPRD:18230 TRUB2 CLONE24922 TruB pseudouridine (psi) synthase family member 2 protein-coding 16-PTNLD14-TUMOR_peak_428 chr1 35063070 35063227 + 5.59946 NA Intergenic AluYf4|SINE|Alu -157500 NM_005268 2709 Hs.198249 NM_005268 HPRD:06840 GJB5 CX31.1 gap junction protein, beta 5, 31.1kDa protein-coding 16-PTNLD14-TUMOR_peak_9668 chr18 74379215 74379279 + 5.59946 NA Intergenic AluSg|SINE|Alu -22739 NR_122073 400661 Hs.514963 NR_122073 LOC400661 - uncharacterized LOC400661 ncRNA 16-PTNLD14-TUMOR_peak_2653 chr10 32004665 32004715 + 5.59946 NA Intergenic L1PA5|LINE|L1 193164 NM_001270699 94134 Hs.499264 NM_018287 HPRD:06446 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 16-PTNLD14-TUMOR_peak_6389 chr14 37767982 37768054 + 5.59946 NA intron (NM_138731, intron 8 of 13) L1PA4|LINE|L1 100900 NM_001195296 145282 Hs.660396 NM_138731 HPRD:06029 MIPOL1 - mirror-image polydactyly 1 protein-coding 16-PTNLD14-TUMOR_peak_14336 chr3 24324719 24324766 + 5.59946 NA intron (NM_000461, intron 2 of 9) L1PA3|LINE|L1 131927 NR_121667 101927854 Hs.570625 NR_121667 LOC101927854 - uncharacterized LOC101927854 ncRNA 16-PTNLD14-TUMOR_peak_19209 chr6 170475761 170475864 + 5.57483 NA Intergenic G-rich|Low_complexity|Low_complexity 95845 NR_002787 154449 Hs.447751 NR_002787 ENSG00000230960 LOC154449 - uncharacterized LOC154449 ncRNA 16-PTNLD14-TUMOR_peak_13384 chr20 61699916 61700017 + 5.57483 NA intron (NR_033370, intron 1 of 4) intron (NR_033370, intron 1 of 4) 30603 NR_033369 100144597 Hs.636485 NR_033369 ENSG00000237119 LINC01056 - long intergenic non-protein coding RNA 1056 ncRNA 16-PTNLD14-TUMOR_peak_22310 chr9 106997502 106997719 + 5.55823 NA Intergenic SVA_A|Other|Other 140779 NM_001042550 10592 Hs.119023 NM_006444 HPRD:09277 SMC2 CAP-E|CAPE|SMC-2|SMC2L1 structural maintenance of chromosomes 2 protein-coding 16-PTNLD14-TUMOR_peak_12616 chr2 219796741 219796815 + 5.55823 NA Intergenic SVA_D|Other|Other -1419 NR_110238 101928537 Hs.611129 NR_110238 ENSG00000228135 LINC01494 - long intergenic non-protein coding RNA 1494 ncRNA 16-PTNLD14-TUMOR_peak_5064 chr12 22516470 22516517 + 5.55823 NA Intergenic AluY|SINE|Alu -28845 NM_003034 6489 Hs.408614 NM_003034 HPRD:03078 ST8SIA1 GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 protein-coding 16-PTNLD14-TUMOR_peak_18412 chr6 31796294 31796423 + 5.55806 NA exon (NM_005346, exon 1 of 1) exon (NM_005346, exon 1 of 1) 846 NM_005346 3304 Hs.719966 NM_005346 HPRD:06784 HSPA1B HSP70-1B|HSP70-2 heat shock 70kDa protein 1B protein-coding 16-PTNLD14-TUMOR_peak_24092 chrY 28807287 28807338 + 5.55350 NA Intergenic (GAGTG)n|Simple_repeat|Simple_repeat 932675 NR_002176 474148 Hs.511777 NR_002176 TTTY3B LNCRNA00122|NCRNA00122 testis-specific transcript, Y-linked 3B (non-protein coding) ncRNA 16-PTNLD14-TUMOR_peak_3686 chr11 13135519 13135620 + 5.54284 NA Intergenic AluYa5|SINE|Alu 104599 NM_001080521 644943 Hs.134650 NM_001080521 RASSF10 - Ras association (RalGDS/AF-6) domain family (N-terminal) member 10 protein-coding 16-PTNLD14-TUMOR_peak_17063 chr5 49437268 49437342 + 5.52604 NA Intergenic ALR/Alpha|Satellite|centr 299929 NM_198449 133418 Hs.561411 NM_198449 HPRD:13271 EMB GP70 embigin protein-coding 16-PTNLD14-TUMOR_peak_8494 chr17 8915718 8915797 + 5.51730 NA Intergenic AluSx1|SINE|Alu -9102 NM_004822 9423 Hs.660885 NM_004822 HPRD:03368 NTN1 NTN1L netrin 1 protein-coding 16-PTNLD14-TUMOR_peak_17543 chr5 127085244 127085466 + 5.47852 NA Intergenic L1PA3|LINE|L1 96648 NM_001127385 613212 Hs.66194 NM_001048252 ENSG00000205279 CTXN3 KABE cortexin 3 protein-coding 16-PTNLD14-TUMOR_peak_18407 chr6 31784100 31784229 + 5.47852 NA exon (NM_005345, exon 1 of 1) exon (NM_005345, exon 1 of 1) 873 NM_005345 3303 Hs.274402 NM_005345 HPRD:00774 HSPA1A HEL-S-103|HSP70-1|HSP70-1A|HSP70I|HSP72|HSPA1 heat shock 70kDa protein 1A protein-coding 16-PTNLD14-TUMOR_peak_4369 chr11 71805224 71805272 + 5.47852 NA intron (NM_001271471, intron 4 of 4) AluSc|SINE|Alu 9185 NM_017907 55004 Hs.731528 NM_017907 HPRD:07933 LAMTOR1 C11orf59|PDRO|Ragulator1|p18|p27RF-Rho late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 protein-coding 16-PTNLD14-TUMOR_peak_2637 chr10 30343685 30343847 + 5.47852 NA intron (NM_020848, intron 1 of 3) AluYf4|SINE|Alu 4722 NM_020848 57608 Hs.533953 NM_020848 ENSG00000165757 KIAA1462 JCAD KIAA1462 protein-coding 16-PTNLD14-TUMOR_peak_18808 chr6 86021611 86021696 + 5.44903 NA Intergenic L1PA3|LINE|L1 -137649 NM_001204813 4907 Hs.153952 NM_002526 HPRD:00552 NT5E CALJA|CD73|E5NT|NT|NT5|NTE|eN|eNT 5'-nucleotidase, ecto (CD73) protein-coding 16-PTNLD14-TUMOR_peak_17393 chr5 98168636 98168683 + 5.43875 NA Intergenic AluY|SINE|Alu -59871 NR_033932 503569 Hs.586188 NR_033932 ENSG00000246763 RGMB-AS1 - RGMB antisense RNA 1 ncRNA 16-PTNLD14-TUMOR_peak_22271 chr9 100690422 100690472 + 5.43875 NA intron (NM_018437, intron 4 of 4) AluY|SINE|Alu -5595 NM_016481 51531 Hs.9196 NM_016481 HPRD:12945 C9orf156 HSPC219|NAP1 chromosome 9 open reading frame 156 protein-coding 16-PTNLD14-TUMOR_peak_5626 chr12 104717454 104717517 + 5.43875 NA intron (NM_182743, intron 7 of 13) SVA_F|Other|Other 19975 NM_001008394 493861 Hs.659857 NM_001008394 HPRD:17415 EID3 NS4EB|NSE4B|NSMCE4B EP300 interacting inhibitor of differentiation 3 protein-coding 16-PTNLD14-TUMOR_peak_22556 chr9 132414449 132414510 + 5.39971 NA Intergenic AluSx|SINE|Alu -10031 NM_017873 140459 Hs.125037 NM_017873 ASB6 - ankyrin repeat and SOCS box containing 6 protein-coding 16-PTNLD14-TUMOR_peak_12744 chr2 238600458 238600566 + 5.39971 NA promoter-TSS (NM_001137553) promoter-TSS (NM_001137553) -295 NM_004735 9208 Hs.471779 NM_004735 HPRD:04460 LRRFIP1 FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP leucine rich repeat (in FLII) interacting protein 1 protein-coding 16-PTNLD14-TUMOR_peak_22203 chr9 94762054 94762115 + 5.39971 NA Intergenic AluSq|SINE|Alu -49640 NM_004560 4920 Hs.98255 NM_004560 HPRD:03822 ROR2 BDB|BDB1|NTRKR2 receptor tyrosine kinase-like orphan receptor 2 protein-coding 16-PTNLD14-TUMOR_peak_21910 chr9 42729379 42729473 + 5.39906 NA Intergenic MER54A|LTR|ERVL 11360 NM_199244 349334 Hs.712520 NM_199244 HPRD:17013 FOXD4L4 FOXD4L2|FOXD4b|bA460E7.2 forkhead box D4-like 4 protein-coding 16-PTNLD14-TUMOR_peak_7784 chr16 33237657 33237724 + 5.37946 NA Intergenic (GCTG)n|Simple_repeat|Simple_repeat -24428 NR_110911 729355 Hs.592038 NM_001099687 ENSG00000261509 TP53TG3B - TP53 target 3B protein-coding 16-PTNLD14-TUMOR_peak_22788 chrUn_gl000216 6033 6095 + 5.37217 NA NA (CATTC)n|Satellite|Satellite NA NA 16-PTNLD14-TUMOR_peak_15339 chr3 173943260 173943316 + 5.36153 NA intron (NM_014932, intron 4 of 6) AluY|SINE|Alu -304702 NR_046664 100874010 Hs.624265 NR_046664 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 16-PTNLD14-TUMOR_peak_17773 chr5 149554560 149554607 + 5.36153 NA intron (NM_001804, intron 1 of 2) AluSq2|SINE|Alu 8239 NM_001804 1044 Hs.1545 NM_001804 HPRD:02849 CDX1 - caudal type homeobox 1 protein-coding 16-PTNLD14-TUMOR_peak_10100 chr19 15068999 15069177 + 5.36153 NA intron (NR_073589, intron 5 of 8) AluSz|SINE|Alu 14642 NM_005071 6511 Hs.515217 NM_005071 HPRD:09005 SLC1A6 EAAT4 solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6 protein-coding 16-PTNLD14-TUMOR_peak_23527 chrX 93195132 93195179 + 5.36153 NA Intergenic L1PA2|LINE|L1 266143 NM_001171111 286499 Hs.110069 NM_173698 HPRD:06562 FAM133A CT115 family with sequence similarity 133, member A protein-coding 16-PTNLD14-TUMOR_peak_18072 chr6 3092696 3092805 + 5.36153 NA intron (NM_003804, intron 6 of 9) CpG 15692 NM_003804 8737 Hs.519842 NM_003804 HPRD:04583 RIPK1 RIP|RIP1 receptor (TNFRSF)-interacting serine-threonine kinase 1 protein-coding 16-PTNLD14-TUMOR_peak_21776 chr9 29189382 29189461 + 5.36153 NA intron (NM_001258282, intron 1 of 6) SVA_D|Other|Other 23577 NM_001258282 158038 Hs.662661 NM_152570 HPRD:08715 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 16-PTNLD14-TUMOR_peak_4816 chr12 470499 470546 + 5.35871 NA intron (NM_001042603, intron 5 of 27) AluY|SINE|Alu -27994 NM_001130147 84318 Hs.631656 NM_032358 HPRD:17485 CCDC77 - coiled-coil domain containing 77 protein-coding 16-PTNLD14-TUMOR_peak_8274 chr16 88614047 88614172 + 5.34438 NA Intergenic G-rich|Low_complexity|Low_complexity -22680 NM_144604 124245 Hs.93670 NM_144604 HPRD:11232 ZC3H18 NHN1 zinc finger CCCH-type containing 18 protein-coding 16-PTNLD14-TUMOR_peak_21383 chr8 127359785 127359832 + 5.32753 NA Intergenic L1PA3|LINE|L1 22068 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 16-PTNLD14-TUMOR_peak_19960 chr7 92739463 92739510 + 5.32378 NA intron (NM_001193307, intron 1 of 1) L1PA5|LINE|L1 7850 NM_001193307 54809 Hs.65641 NM_017654 HPRD:11531 SAMD9 C7orf5|DRIF1|NFTC|OEF1|OEF2 sterile alpha motif domain containing 9 protein-coding 16-PTNLD14-TUMOR_peak_14221 chr3 9601510 9601623 + 5.32378 NA Intergenic SVA_D|Other|Other -6080 NM_198560 375323 Hs.56782 NM_198560 LHFPL4 - lipoma HMGIC fusion partner-like 4 protein-coding 16-PTNLD14-TUMOR_peak_22773 chrUn_gl000214 118014 118071 + 5.30495 NA NA ACRO1|Satellite|acro NA NA 16-PTNLD14-TUMOR_peak_4520 chr11 93680008 93680055 + 5.29802 NA Intergenic SVA_F|Other|Other -74347 NM_001098672 341208 Hs.669645 NM_001098672 ENSG00000181333 HEPHL1 - hephaestin-like 1 protein-coding 16-PTNLD14-TUMOR_peak_2223 chr1 230865645 230865700 + 5.28598 NA Intergenic AluSc8|SINE|Alu -15336 NM_000029 183 Hs.19383 NM_000029 HPRD:00106 AGT ANHU|SERPINA8 angiotensinogen (serpin peptidase inhibitor, clade A, member 8) protein-coding 16-PTNLD14-TUMOR_peak_22455 chr9 127079683 127079730 + 5.28598 NA intron (NM_001166171, intron 5 of 10) AluSx|SINE|Alu 25007 NM_001166169 10783 Hs.197071 NM_014397 HPRD:05348 NEK6 SID6-1512 NIMA-related kinase 6 protein-coding 16-PTNLD14-TUMOR_peak_21513 chr8 139893857 139893904 + 5.28598 NA intron (NM_152888, intron 2 of 64) AluY|SINE|Alu 32356 NM_152888 169044 Hs.117169 NM_152888 HPRD:09885 COL22A1 - collagen, type XXII, alpha 1 protein-coding 16-PTNLD14-TUMOR_peak_5570 chr12 95229326 95229500 + 5.28598 NA TTS (NR_036685) TTS (NR_036685) 1183 NR_036685 160313 Hs.527883 NR_036685 ENSG00000216306 KRT19P2 KRT19P5 keratin 19 pseudogene 2 pseudo 16-PTNLD14-TUMOR_peak_20981 chr8 48257955 48258002 + 5.28598 NA intron (NR_104581, intron 5 of 16) L1PA5|LINE|L1 84508 NM_001080394 23514 Hs.381058 NM_001080394 ENSG00000164808 SPIDR KIAA0146 scaffolding protein involved in DNA repair protein-coding 16-PTNLD14-TUMOR_peak_6255 chr14 21114797 21114844 + 5.24891 NA Intergenic AluSx1|SINE|Alu -4970 NM_001001968 341799 Hs.513132 NM_001001968 HPRD:17779 OR6S1 OR14-37|OR6S1Q olfactory receptor, family 6, subfamily S, member 1 protein-coding 16-PTNLD14-TUMOR_peak_16762 chr5 1867416 1867463 + 5.24079 NA Intergenic G-rich|Low_complexity|Low_complexity -10757 NR_104602 101929034 Hs.128032 NR_104602 ENSG00000250417 LOC101929034 - uncharacterized LOC101929034 ncRNA 16-PTNLD14-TUMOR_peak_17678 chr5 140493246 140493301 + 5.22202 NA Intergenic L1PA4|LINE|L1 -8059 NM_018938 56131 Hs.591250 NM_018938 HPRD:07559 PCDHB4 PCDH-BETA4 protocadherin beta 4 protein-coding 16-PTNLD14-TUMOR_peak_2989 chr10 53706794 53706860 + 5.21258 NA intron (NM_006258, intron 5 of 17) L1PA3|LINE|L1 -247472 NM_015235 23283 Hs.591358 NM_015235 HPRD:09900 CSTF2T CstF-64T cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant protein-coding 16-PTNLD14-TUMOR_peak_18673 chr6 55173950 55173997 + 5.21198 NA Intergenic L1PA3|LINE|L1 -18294 NM_207410 389400 Hs.526967 NM_207410 HPRD:15622 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 16-PTNLD14-TUMOR_peak_7989 chr16 58179641 58179697 + 5.21198 NA Intergenic AluY|SINE|Alu -16373 NM_013242 29105 Hs.532755 NM_013242 HPRD:13616 CFAP20 C16orf80|EVORF|GTL3|fSAP23 cilia and flagella associated protein 20 protein-coding 16-PTNLD14-TUMOR_peak_18703 chr6 61901706 61901753 + 5.18647 NA Intergenic ALR/Alpha|Satellite|centr -382279 NM_001190706 100463487 NM_001190706 ENSG00000255633 MTRNR2L9 HN9 MT-RNR2-like 9 (pseudogene) protein-coding 16-PTNLD14-TUMOR_peak_20597 chr8 537410 537457 + 5.18228 NA Intergenic L1PA6|LINE|L1 -41652 NM_175075 157695 Hs.289293 NM_175075 HPRD:13740 TDRP C8orf42|Inm01|TDRP1|TDRP2 testis development related protein protein-coding 16-PTNLD14-TUMOR_peak_5741 chr12 116971838 116971888 + 5.18228 NA non-coding (NR_027345, exon 2 of 2) non-coding (NR_027345, exon 2 of 2) 623 NR_027346 100287569 Hs.441601 NM_207436 ENSG00000196668 LINC00173 NCRNA00173 long intergenic non-protein coding RNA 173 ncRNA 16-PTNLD14-TUMOR_peak_16290 chr4 111527887 111527934 + 5.17665 NA Intergenic L1PA5|LINE|L1 16344 NM_000325 5308 Hs.643588 NM_000325 HPRD:03328 PITX2 ARP1|Brx1|IDG2|IGDS|IGDS2|IHG2|IRID2|Otlx2|PTX2|RGS|RIEG|RIEG1|RS paired-like homeodomain 2 protein-coding 16-PTNLD14-TUMOR_peak_6122 chr13 98265336 98265521 + 5.17665 NA Intergenic L1PA3|LINE|L1 178953 NM_021033 5911 Hs.508480 NM_021033 RAP2A K-REV|KREV|RAP2|RbBP-30 RAP2A, member of RAS oncogene family protein-coding 16-PTNLD14-TUMOR_peak_2798 chr10 42383278 42383328 + 5.17665 NA Intergenic HSATII|Satellite|Satellite 480190 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 16-PTNLD14-TUMOR_peak_20990 chr8 49854154 49854201 + 5.17665 NA Intergenic L1PA6|LINE|L1 -20178 NM_003068 6591 Hs.360174 NM_003068 HPRD:03689 SNAI2 SLUG|SLUGH1|SNAIL2|WS2D snail family zinc finger 2 protein-coding 16-PTNLD14-TUMOR_peak_1061 chr1 103109235 103109332 + 5.16857 NA Intergenic L1PA3|LINE|L1 464769 NM_080630 1301 Hs.523446 NM_001854 HPRD:00375 COL11A1 CO11A1|COLL6|STL2 collagen, type XI, alpha 1 protein-coding 16-PTNLD14-TUMOR_peak_13048 chr20 32335327 32335379 + 5.15397 NA intron (NR_104259, intron 3 of 13) AluYa5|SINE|Alu 15787 NM_001282935 84905 Hs.516989 NM_032819 HPRD:15781 ZNF341 - zinc finger protein 341 protein-coding 16-PTNLD14-TUMOR_peak_4835 chr12 555267 555337 + 5.14756 NA Intergenic AluY|SINE|Alu -14241 NM_173593 283358 Hs.504416 NM_173593 HPRD:12514 B4GALNT3 - beta-1,4-N-acetyl-galactosaminyl transferase 3 protein-coding 16-PTNLD14-TUMOR_peak_832 chr1 65601291 65601413 + 5.14083 NA Intergenic AluY|SINE|Alu -11880 NM_203464 205 Hs.10862 NM_013410 HPRD:00048 AK4 AK 4|AK3|AK3L1|AK3L2 adenylate kinase 4 protein-coding 16-PTNLD14-TUMOR_peak_936 chr1 87148514 87148561 + 5.14083 NA Intergenic L1HS|LINE|L1 -21716 NM_016009 51100 Hs.136309 NM_016009 HPRD:15333 SH3GLB1 Bif-1|PPP1R70|dJ612B15.2 SH3-domain GRB2-like endophilin B1 protein-coding 16-PTNLD14-TUMOR_peak_20005 chr7 98663456 98663591 + 5.14083 NA intron (NM_001199847, intron 1 of 17) AluSc|SINE|Alu 52735 NR_110102 101927550 Hs.636663 NR_110102 LOC101927550 - uncharacterized LOC101927550 ncRNA 16-PTNLD14-TUMOR_peak_23401 chrX 71398638 71398770 + 5.13986 NA Intergenic SVA_E|Other|Other -2822 NM_001170747 5303 Hs.655623 NM_006223 HPRD:02219 PIN4 EPVH|PAR14|PAR17 protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) protein-coding 16-PTNLD14-TUMOR_peak_7250 chr15 99403164 99403282 + 5.10648 NA intron (NM_001291858, intron 2 of 20) AluSx|SINE|Alu 75568 NR_039864 100616432 NR_039864 MIR4714 - microRNA 4714 ncRNA 16-PTNLD14-TUMOR_peak_21131 chr8 85300472 85300519 + 5.10648 NA intron (NM_001100392, intron 2 of 9) L1PA3|LINE|L1 203395 NM_001100391 138046 Hs.121663 NM_173848 HPRD:11236 RALYL HNRPCL3 RALY RNA binding protein-like protein-coding 16-PTNLD14-TUMOR_peak_3470 chr10 131961484 131961614 + 5.10648 NA intron (NM_006541, intron 4 of 10) AluSz|SINE|Alu 26910 NM_001199868 10539 Hs.42644 NM_006541 HPRD:10153 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 16-PTNLD14-TUMOR_peak_14596 chr3 56954826 56954953 + 5.10648 NA intron (NM_001128615, intron 3 of 12) AluY|SINE|Alu -4390 NM_001289698 50650 Hs.476402 NM_019555 HPRD:12480 ARHGEF3 GEF3|STA3|XPLN Rho guanine nucleotide exchange factor (GEF) 3 protein-coding 16-PTNLD14-TUMOR_peak_7002 chr15 50998497 50998546 + 5.10648 NA Intergenic AluYa8|SINE|Alu -19509 NM_001301212 54822 Hs.512894 NM_017672 HPRD:10418 TRPM7 ALSPDC|CHAK|CHAK1|LTRPC7|LTrpC-7|TRP-PLIK transient receptor potential cation channel, subfamily M, member 7 protein-coding 16-PTNLD14-TUMOR_peak_6761 chr14 103665927 103665974 + 5.10648 NA Intergenic AluSg|SINE|Alu -10585 NR_033938 100131366 Hs.147881 NR_033938 ENSG00000251533 LINC00605 - long intergenic non-protein coding RNA 605 ncRNA 16-PTNLD14-TUMOR_peak_15590 chr4 430907 430959 + 5.10648 NA intron (NR_002451, intron 2 of 2) AluY|SINE|Alu 37065 NR_002451 79963 Hs.745030 NM_024903 ABCA11P ABCA11|EST1133530 ATP-binding cassette, sub-family A (ABC1), member 11, pseudogene pseudo 16-PTNLD14-TUMOR_peak_9629 chr18 62276237 62276284 + 5.10648 NA Intergenic SVA_D|Other|Other -348970 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LOC400654 - uncharacterized LOC400654 ncRNA 16-PTNLD14-TUMOR_peak_3436 chr10 129565396 129565478 + 5.10648 NA Intergenic AluYa5|SINE|Alu 29899 NM_207426 399823 Hs.449674 NM_207426 HPRD:13540 FOXI2 - forkhead box I2 protein-coding 16-PTNLD14-TUMOR_peak_7008 chr15 51167267 51167439 + 5.10648 NA Intergenic AluSp|SINE|Alu -33516 NM_007347 23431 Hs.413366 NM_007347 HPRD:06258 AP4E1 CPSQ4|SPG51 adaptor-related protein complex 4, epsilon 1 subunit protein-coding 16-PTNLD14-TUMOR_peak_7023 chr15 53761297 53761355 + 5.10648 NA Intergenic L1PA2|LINE|L1 71723 NR_102336 256764 Hs.122125 NM_182758 HPRD:10987 WDR72 AI2A3 WD repeat domain 72 protein-coding 16-PTNLD14-TUMOR_peak_4066 chr11 55244544 55244617 + 5.10648 NA Intergenic L1PA3|LINE|L1 -77203 NM_001001920 81309 Hs.589003 NM_001001920 HPRD:14963 OR4C15 OR11-127|OR11-134 olfactory receptor, family 4, subfamily C, member 15 protein-coding 16-PTNLD14-TUMOR_peak_23586 chrX 107561545 107561592 + 5.10648 NA intron (NM_001287758, intron 2 of 45) L1P1|LINE|L1 120092 NM_001287760 1288 Hs.145586 NM_001847 HPRD:02364 COL4A6 CXDELq22.3|DELXq22.3|DFNX6 collagen, type IV, alpha 6 protein-coding 16-PTNLD14-TUMOR_peak_21738 chr9 21705420 21705553 + 5.10648 NA Intergenic L1PA3|LINE|L1 -97149 NM_002451 4507 Hs.193268 NM_002451 HPRD:01134 MTAP BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus methylthioadenosine phosphorylase protein-coding 16-PTNLD14-TUMOR_peak_287 chr1 24365345 24365468 + 5.10648 NA Intergenic FRAM|SINE|Alu -58453 NM_006625 10772 Hs.3530 NM_006625 HPRD:05562 SRSF10 FUSIP1|FUSIP2|NSSR|PPP1R149|SFRS13|SFRS13A|SRp38|SRrp40|TASR|TASR1|TASR2 serine/arginine-rich splicing factor 10 protein-coding 16-PTNLD14-TUMOR_peak_16043 chr4 59793394 59793441 + 5.10648 NA Intergenic L1PA2|LINE|L1 -1816866 NM_001253835 3490 Hs.479808 NM_001553 HPRD:04183 IGFBP7 AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF insulin-like growth factor binding protein 7 protein-coding 16-PTNLD14-TUMOR_peak_11284 chr2 32923670 32923730 + 5.10648 NA intron (NM_017735, intron 9 of 19) AluY|SINE|Alu 63378 NR_039922 100616219 NR_039922 MIR4765 - microRNA 4765 ncRNA 16-PTNLD14-TUMOR_peak_60 chr1 1761736 1761796 + 5.10648 NA intron (NM_001282539, intron 1 of 10) AluYc3|SINE|Alu -50258 NM_001198994 65220 Hs.654792 NM_023018 HPRD:16907 NADK dJ283E3.1 NAD kinase protein-coding 16-PTNLD14-TUMOR_peak_23547 chrX 100901541 100901588 + 5.10648 NA Intergenic L1PA5|LINE|L1 13312 NM_177949 9823 Hs.48924 NM_014782 HPRD:02293 ARMCX2 ALEX2|GASP9 armadillo repeat containing, X-linked 2 protein-coding 16-PTNLD14-TUMOR_peak_3290 chr10 105118838 105118940 + 5.10648 NA Intergenic AluSp|SINE|Alu -7998 NM_001011663 84108 Hs.335808 NM_032154 HPRD:07427 PCGF6 MBLR|RNF134 polycomb group ring finger 6 protein-coding 16-PTNLD14-TUMOR_peak_22579 chr9 133416678 133416781 + 5.10648 NA Intergenic AluSg7|SINE|Alu 38152 NR_027440 100272217 Hs.601255 NR_027440 LOC100272217 - uncharacterized LOC100272217 ncRNA 16-PTNLD14-TUMOR_peak_17694 chr5 140609644 140609750 + 5.10648 NA Intergenic L1PA2|LINE|L1 -4241 NR_001281 54660 Hs.676071 NR_001281 ENSG00000146001 PCDHB18 PCDH-psi2 protocadherin beta 18 pseudogene pseudo 16-PTNLD14-TUMOR_peak_17493 chr5 116827494 116827541 + 5.10648 NA intron (NR_046089, intron 3 of 5) L1PA3|LINE|L1 76309 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 16-PTNLD14-TUMOR_peak_23563 chrX 103518998 103519148 + 5.10648 NA Intergenic AluSx1|SINE|Alu -19474 NM_153448 80712 Hs.223782 NM_153448 HPRD:06503 ESX1 ESX1L|ESXR1 ESX homeobox 1 protein-coding 16-PTNLD14-TUMOR_peak_21773 chr9 28189306 28189667 + 5.10648 NA intron (NM_152570, intron 5 of 6) (GGAA)n|Simple_repeat|Simple_repeat 529817 NM_152570 158038 Hs.662661 NM_152570 HPRD:08715 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 16-PTNLD14-TUMOR_peak_11541 chr2 70668709 70668756 + 5.10648 NA Intergenic L1PA2|LINE|L1 40040 NR_046798 100874273 Hs.682157 NR_046798 TGFA-IT1 - TGFA intronic transcript 1 (non-protein coding) ncRNA 16-PTNLD14-TUMOR_peak_19945 chr7 90586528 90586639 + 5.10648 NA intron (NM_001287137, intron 7 of 12) L1PA3|LINE|L1 247453 NM_001287136 5218 Hs.258576 NM_012395 HPRD:15121 CDK14 PFTAIRE1|PFTK1 cyclin-dependent kinase 14 protein-coding 16-PTNLD14-TUMOR_peak_14334 chr3 24121418 24121468 + 5.10648 NA Intergenic L1PA4|LINE|L1 23295 NR_026834 152024 Hs.385606 NR_026834 ENSG00000224074 LINC00691 - long intergenic non-protein coding RNA 691 ncRNA 16-PTNLD14-TUMOR_peak_11807 chr2 96793378 96793425 + 5.10648 NA intron (NM_001002036, intron 8 of 8) AluSz|SINE|Alu 10774 NM_001002036 431705 Hs.447993 NM_001002036 HPRD:16396 ASTL SAS1B astacin-like metallo-endopeptidase (M12 family) protein-coding 16-PTNLD14-TUMOR_peak_18973 chr6 124074390 124074437 + 5.10648 NA Intergenic AluY|SINE|Alu -50578 NM_153355 154215 Hs.656604 NM_153355 HPRD:18168 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 Na+/K+ transporting ATPase interacting 2 protein-coding 16-PTNLD14-TUMOR_peak_3422 chr10 127972724 127972854 + 5.10648 NA intron (NM_001288975, intron 2 of 18) AluSx|SINE|Alu 104338 NM_001288975 8038 Hs.594351 NM_003474 HPRD:04092 ADAM12 ADAM12-OT1|CAR10|MCMP|MCMPMltna|MLTN|MLTNA ADAM metallopeptidase domain 12 protein-coding 16-PTNLD14-TUMOR_peak_6065 chr13 71264418 71264495 + 5.10648 NA Intergenic AluY|SINE|Alu -324817 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 16-PTNLD14-TUMOR_peak_7613 chr16 22373304 22373351 + 5.10648 NA intron (NM_001802, intron 2 of 4) AluY|SINE|Alu 12611 NM_001802 1039 Hs.513430 NM_001802 HPRD:06681 CDR2 CDR62|Yo cerebellar degeneration-related protein 2, 62kDa protein-coding 16-PTNLD14-TUMOR_peak_14630 chr3 66785724 66785773 + 5.10648 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -234903 NM_015541 26018 Hs.518055 NM_015541 HPRD:10057 LRIG1 LIG-1|LIG1 leucine-rich repeats and immunoglobulin-like domains 1 protein-coding 16-PTNLD14-TUMOR_peak_23128 chrX 32532626 32532727 + 5.10648 NA intron (NM_004009, intron 18 of 78) AluY|SINE|Alu -102305 NM_004011 1756 Hs.495912 NM_000109 HPRD:02303 DMD BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272|MRX85 dystrophin protein-coding 16-PTNLD14-TUMOR_peak_7180 chr15 83286520 83286569 + 5.10648 NA intron (NM_030594, intron 2 of 11) AluYa5|SINE|Alu 29812 NM_001288819 64506 Hs.459132 NM_030594 HPRD:09553 CPEB1 CEBP|CPE-BP1|CPEB|CPEB-1|hCPEB-1 cytoplasmic polyadenylation element binding protein 1 protein-coding 16-PTNLD14-TUMOR_peak_23581 chrX 106000544 106000591 + 5.10648 NA intron (NM_194463, intron 1 of 6) L1PA2|LINE|L1 30673 NM_194463 79589 Hs.496542 NM_024539 HPRD:02340 RNF128 GRAIL ring finger protein 128, E3 ubiquitin protein ligase protein-coding 16-PTNLD14-TUMOR_peak_16971 chr5 42031490 42031537 + 5.10648 NA Intergenic L1PA4|LINE|L1 106157 NM_033484 26272 Hs.165575 NM_012176 HPRD:09949 FBXO4 FBX4 F-box protein 4 protein-coding 16-PTNLD14-TUMOR_peak_17109 chr5 55240612 55240659 + 5.10648 NA intron (NR_120480, intron 16 of 17) intron (NR_120480, intron 16 of 17) 50186 NM_175767 3572 Hs.532082 NM_002184 HPRD:02824 IL6ST CD130|CDW130|GP130|IL-6RB interleukin 6 signal transducer protein-coding 16-PTNLD14-TUMOR_peak_8137 chr16 72985267 72985314 + 5.10648 NA intron (NM_001164766, intron 1 of 8) AluSx1|SINE|Alu 96984 NM_006885 463 Hs.598297 NM_006885 HPRD:00075 ZFHX3 ATBF1|ATBT|ZNF927 zinc finger homeobox 3 protein-coding 16-PTNLD14-TUMOR_peak_21486 chr8 138258321 138258400 + 5.10648 NA Intergenic L1HS|LINE|L1 167471 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 16-PTNLD14-TUMOR_peak_20166 chr7 119297409 119297464 + 5.10648 NA Intergenic L1HS|LINE|L1 -616286 NM_012281 3751 Hs.654739 NM_012281 HPRD:09254 KCND2 KV4.2|RK5 potassium voltage-gated channel, Shal-related subfamily, member 2 protein-coding 16-PTNLD14-TUMOR_peak_6658 chr14 79775747 79775794 + 5.10648 NA intron (NM_001272020, intron 1 of 5) L1HS|LINE|L1 30088 NR_073546 9369 Hs.368307 NM_004796 NRXN3 C14orf60 neurexin 3 protein-coding 16-PTNLD14-TUMOR_peak_3820 chr11 30760147 30760194 + 5.10648 NA Intergenic L1PA2|LINE|L1 -152240 NM_001145399 744 Hs.289795 NM_001584 HPRD:02947 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 16-PTNLD14-TUMOR_peak_23148 chrX 37566705 37566788 + 5.10648 NA intron (NM_021083, intron 2 of 2) SVA_D|Other|Other 21613 NM_021083 7504 Hs.78919 NM_021083 HPRD:02444 XK KX|MCLDS|NA|NAC|X1k|XKR1 X-linked Kx blood group protein-coding 16-PTNLD14-TUMOR_peak_5049 chr12 22371038 22371155 + 5.10648 NA intron (NM_003034, intron 4 of 4) AluSz6|SINE|Alu 116552 NM_003034 6489 Hs.408614 NM_003034 HPRD:03078 ST8SIA1 GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 protein-coding 16-PTNLD14-TUMOR_peak_6932 chr15 39195139 39195186 + 5.10648 NA Intergenic AluY|SINE|Alu 206363 NM_207444 400359 Hs.448785 NM_207444 HPRD:13418 C15orf53 - chromosome 15 open reading frame 53 protein-coding 16-PTNLD14-TUMOR_peak_23134 chrX 33099418 33099465 + 5.10648 NA intron (NM_000109, intron 1 of 78) AluSz|SINE|Alu 47103 NM_004010 1756 Hs.495912 NM_000109 HPRD:02303 DMD BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272|MRX85 dystrophin protein-coding 16-PTNLD14-TUMOR_peak_7439 chr16 4520727 4520774 + 5.10648 NA intron (NM_020677, intron 2 of 5) AluY|SINE|Alu -3954 NM_001127206 3163 Hs.284279 NM_002134 HPRD:00783 HMOX2 HO-2 heme oxygenase (decycling) 2 protein-coding 16-PTNLD14-TUMOR_peak_23062 chrX 15048907 15049058 + 5.10648 NA Intergenic L1PA3|LINE|L1 145569 NM_001177475 158747 Hs.744919 NM_152581 HPRD:06642 MOSPD2 - motile sperm domain containing 2 protein-coding 16-PTNLD14-TUMOR_peak_15815 chr4 25497230 25497284 + 5.10648 NA Intergenic AluYa5|SINE|Alu 118409 NM_013367 29945 Hs.152173 NM_013367 HPRD:09505 ANAPC4 APC4 anaphase promoting complex subunit 4 protein-coding 16-PTNLD14-TUMOR_peak_22584 chr9 133460021 133460073 + 5.10648 NA intron (NM_003934, intron 1 of 18) AluSz|SINE|Alu 5087 NM_003934 8939 Hs.98751 NM_003934 ENSG00000107164 FUBP3 FBP3 far upstream element (FUSE) binding protein 3 protein-coding 16-PTNLD14-TUMOR_peak_272 chr1 23662499 23662567 + 5.10648 NA intron (NM_005826, intron 4 of 10) AluYa5|SINE|Alu 8324 NM_001102398 10236 Hs.373763 NM_005826 HPRD:06228 HNRNPR HNRPR|hnRNP-R heterogeneous nuclear ribonucleoprotein R protein-coding 16-PTNLD14-TUMOR_peak_3471 chr10 132450390 132450469 + 5.10648 NA Intergenic L1PA3|LINE|L1 310502 NR_036180 100422867 NR_036180 miRBase:MI0015825 MIR378C - microRNA 378c ncRNA 16-PTNLD14-TUMOR_peak_20160 chr7 112731184 112731231 + 5.10648 NA Intergenic L1PA3|LINE|L1 -3374 NM_001146265 54329 Hs.152009 NM_018970 HPRD:05543 GPR85 SREB|SREB2 G protein-coupled receptor 85 protein-coding 16-PTNLD14-TUMOR_peak_8162 chr16 75556560 75556607 + 5.10648 NA Intergenic AluSx|SINE|Alu 12485 NM_024533 23563 Hs.745424 NM_012126 HPRD:07059 CHST5 I-GlcNAc-6-ST|I-GlcNAc6ST|glcNAc6ST-3|gn6st-3|hIGn6ST carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 5 protein-coding 16-PTNLD14-TUMOR_peak_19084 chr6 148813683 148813730 + 5.10648 NA intron (NM_015278, intron 8 of 19) AluSx|SINE|Alu 149977 NM_015278 23328 Hs.193133 NM_015278 HPRD:06408 SASH1 SH3D6A|dJ323M4|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 16-PTNLD14-TUMOR_peak_23119 chrX 30787245 30787292 + 5.10648 NA Intergenic L1PA4|LINE|L1 115792 NM_001128127 2710 Hs.1466 NM_000167 HPRD:08363 GK GK1|GKD glycerol kinase protein-coding 16-PTNLD14-TUMOR_peak_23307 chrX 62205549 62205681 + 5.10648 NA Intergenic L1PA3|LINE|L1 365603 NM_001012968 139886 Hs.612782 NM_001012968 HPRD:12556 SPIN4 - spindlin family, member 4 protein-coding 16-PTNLD14-TUMOR_peak_4556 chr11 99474282 99474329 + 5.10648 NA intron (NM_175566, intron 1 of 21) L1HS|LINE|L1 47429 NM_175566 53942 Hs.656783 NM_014361 HPRD:06241 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 16-PTNLD14-TUMOR_peak_22125 chr9 84133957 84134065 + 5.10648 NA Intergenic AluY|SINE|Alu 169585 NM_005077 7088 Hs.197320 NM_005077 HPRD:02557 TLE1 ESG|ESG1|GRG1 transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila) protein-coding 16-PTNLD14-TUMOR_peak_16266 chr4 108441161 108441208 + 5.09842 NA Intergenic AluSx3|SINE|Alu 200235 NM_005443 9061 Hs.368610 NM_005443 HPRD:09132 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 16-PTNLD14-TUMOR_peak_475 chr1 36514866 36514985 + 5.08726 NA intron (NM_177422, intron 15 of 16) AluSc|SINE|Alu -34751 NM_014466 27285 Hs.127111 NM_014466 HPRD:16410 TEKT2 TEKTB1|TEKTIN-T|h-tektin-t tektin 2 (testicular) protein-coding 16-PTNLD14-TUMOR_peak_16471 chr4 145567161 145567264 + 5.07712 NA promoter-TSS (NM_022475) promoter-TSS (NM_022475) -41 NR_037595 646576 Hs.632595 NR_037595 ENSG00000248890 HHIP-AS1 - HHIP antisense RNA 1 ncRNA 16-PTNLD14-TUMOR_peak_4591 chr11 106671267 106671314 + 5.07712 NA intron (NM_001256424, intron 5 of 8) L1PA5|LINE|L1 217881 NM_000855 2977 Hs.24321 NM_000855 HPRD:03146 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1, soluble, alpha 2 protein-coding 16-PTNLD14-TUMOR_peak_14172 chr3 1700398 1700446 + 5.07712 NA Intergenic L1PA2|LINE|L1 -440128 NM_175607 152330 Hs.298705 NM_175607 HPRD:16239 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 16-PTNLD14-TUMOR_peak_16294 chr4 112317294 112317361 + 5.07712 NA Intergenic L1PA3|LINE|L1 -749226 NM_152400 132720 Hs.23439 NM_152400 C4orf32 - chromosome 4 open reading frame 32 protein-coding 16-PTNLD14-TUMOR_peak_18794 chr6 83343456 83343505 + 5.07712 NA Intergenic L1PA3|LINE|L1 269519 NM_001166392 7162 Hs.82128 NM_006670 HPRD:01837 TPBG 5T4|5T4AG|M6P1|WAIF1 trophoblast glycoprotein protein-coding 16-PTNLD14-TUMOR_peak_22955 chrUn_gl000225 139022 139092 + 5.06918 NA NA BSR/Beta|Satellite|Satellite NA NA 16-PTNLD14-TUMOR_peak_864 chr1 74563441 74563488 + 5.04437 NA intron (NM_001105659, intron 5 of 7) L1PA5|LINE|L1 100407 NM_001105659 127255 Hs.644625 NM_145258 HPRD:14485 LRRIQ3 LRRC44 leucine-rich repeats and IQ motif containing 3 protein-coding 16-PTNLD14-TUMOR_peak_78 chr1 2585524 2585637 + 5.04437 NA intron (NM_001242672, intron 4 of 6) intron (NM_001242672, intron 4 of 6) -21099 NM_033467 79258 Hs.591453 NM_033467 HPRD:07024 MMEL1 MMEL2|NEP2|NEPII|NL1|NL2|SEP membrane metallo-endopeptidase-like 1 protein-coding 16-PTNLD14-TUMOR_peak_17876 chr5 167825214 167825332 + 5.04437 NA intron (NM_015238, intron 4 of 22) AluY|SINE|Alu -88190 NM_002887 5917 Hs.654907 NM_002887 HPRD:00142 RARS ArgRS|DALRD1 arginyl-tRNA synthetase protein-coding 16-PTNLD14-TUMOR_peak_18623 chr6 46896845 46896921 + 5.03120 NA intron (NM_015234, intron 1 of 20) L1PA4|LINE|L1 -7169 NM_001098518 221395 Hs.362806 NM_015234 HPRD:11010 GPR116 KPG_001 G protein-coupled receptor 116 protein-coding 16-PTNLD14-TUMOR_peak_16605 chr4 170967991 170968040 + 5.00974 NA Intergenic SVA_D|Other|Other -20586 NM_021647 9848 Hs.593942 NM_021647 HPRD:14391 MFAP3L NYD-sp9 microfibrillar-associated protein 3-like protein-coding 16-PTNLD14-TUMOR_peak_12851 chr20 6171168 6171215 + 5.00974 NA Intergenic L1PA2|LINE|L1 -67000 NM_017671 55612 Hs.472054 NM_017671 HPRD:06388 FERMT1 C20orf42|DTGCU2|KIND1|UNC112A|URP1 fermitin family member 1 protein-coding 16-PTNLD14-TUMOR_peak_19870 chr7 76626367 76626537 + 5.00974 NA intron (NR_023383, intron 2 of 10) (TG)n|Simple_repeat|Simple_repeat 16313 NR_023383 441263 Hs.675888 NR_023383 ENSG00000265479 DTX2P1-UPK3BP1-PMS2P11 PMS2L11|PMS2P11|PMSR6 DTX2P1-UPK3BP1-PMS2P11 readthrough transcribed pseudogene pseudo 16-PTNLD14-TUMOR_peak_15173 chr3 148625529 148625580 + 5.00974 NA Intergenic AluY|SINE|Alu 42511 NM_001870 1359 Hs.646 NM_001870 HPRD:00270 CPA3 MC-CPA carboxypeptidase A3 (mast cell) protein-coding 16-PTNLD14-TUMOR_peak_8212 chr16 82014654 82014701 + 5.00974 NA Intergenic L1PA3|LINE|L1 30416 NM_145168 93517 Hs.87779 NM_145168 HPRD:17118 SDR42E1 - short chain dehydrogenase/reductase family 42E, member 1 protein-coding 16-PTNLD14-TUMOR_peak_18712 chr6 62382250 62382321 + 5.00974 NA Intergenic L1PA3|LINE|L1 98277 NM_001190706 100463487 NM_001190706 ENSG00000255633 MTRNR2L9 HN9 MT-RNR2-like 9 (pseudogene) protein-coding 16-PTNLD14-TUMOR_peak_6766 chr14 103739342 103739389 + 4.97774 NA Intergenic AluY|SINE|Alu -60974 NM_001969 1983 Hs.433702 NM_001969 HPRD:03417 EIF5 EIF-5|EIF-5A eukaryotic translation initiation factor 5 protein-coding 16-PTNLD14-TUMOR_peak_3971 chr11 48789984 48790031 + 4.97774 NA Intergenic ALR/Alpha|Satellite|centr -263145 NM_001206626 283116 Hs.448644 NM_001206626 ENSG00000182053 TRIM49B - tripartite motif containing 49B protein-coding 16-PTNLD14-TUMOR_peak_10072 chr19 14933426 14933483 + 4.97774 NA Intergenic AluSg4|SINE|Alu 5822 NM_017506 26659 Hs.137573 NM_017506 OR7A5 HTPCR2 olfactory receptor, family 7, subfamily A, member 5 protein-coding 16-PTNLD14-TUMOR_peak_8205 chr16 81803283 81803403 + 4.97774 NA Intergenic AluYa5|SINE|Alu -9520 NM_002661 5336 Hs.372303 NM_002661 HPRD:02570 PLCG2 APLAID|FCAS3|PLC-IV|PLC-gamma-2 phospholipase C, gamma 2 (phosphatidylinositol-specific) protein-coding 16-PTNLD14-TUMOR_peak_22791 chrUn_gl000216 8043 8109 + 4.97160 NA NA (CATTC)n|Satellite|Satellite NA NA 16-PTNLD14-TUMOR_peak_23470 chrX 80322371 80322422 + 4.96693 NA Intergenic L1PA2|LINE|L1 -134907 NM_003022 6451 Hs.108029 NM_003022 HPRD:02178 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate-rich protein like protein-coding 16-PTNLD14-TUMOR_peak_3628 chr11 7003013 7003060 + 4.96693 NA Intergenic L1PA3|LINE|L1 38550 NM_013249 7761 Hs.733636 NM_013249 HPRD:05424 ZNF214 BAZ-1|BAZ1 zinc finger protein 214 protein-coding 16-PTNLD14-TUMOR_peak_14647 chr3 66886580 66886650 + 4.94533 NA Intergenic AluSc|SINE|Alu -162112 NM_032505 84541 Hs.116665 NM_032505 HPRD:18138 KBTBD8 TA-KRP kelch repeat and BTB (POZ) domain containing 8 protein-coding 16-PTNLD14-TUMOR_peak_18753 chr6 75111346 75111406 + 4.94533 NA intron (NR_110856, intron 2 of 3) L1PA4|LINE|L1 332209 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 16-PTNLD14-TUMOR_peak_13810 chr22 19279154 19279323 + 4.94533 NA promoter-TSS (NM_001835) promoter-TSS (NM_001835) 1 NM_007098 8218 Hs.368266 NM_001835 HPRD:03172 CLTCL1 CHC22|CLH22|CLTCL|CLTD clathrin, heavy chain-like 1 protein-coding 16-PTNLD14-TUMOR_peak_11739 chr2 92278835 92278898 + 4.94274 NA Intergenic ALR/Alpha|Satellite|centr 149707 NR_027714 440888 Hs.730239 NM_001032412 ENSG00000226481 ACTR3BP2 FKSG73 ACTR3B pseudogene 2 pseudo 16-PTNLD14-TUMOR_peak_3693 chr11 13843146 13843301 + 4.93080 NA Intergenic L1PA4|LINE|L1 -140961 NM_006108 10418 Hs.643864 NM_006108 SPON1 VSGP/F-spondin|f-spondin spondin 1, extracellular matrix protein protein-coding 16-PTNLD14-TUMOR_peak_8053 chr16 67340225 67340272 + 4.92595 NA intron (NM_001100915, intron 2 of 15) AluSx1|SINE|Alu 20413 NM_001100915 146212 Hs.299127 NM_001100915 ENSG00000168676 KCTD19 - potassium channel tetramerization domain containing 19 protein-coding 16-PTNLD14-TUMOR_peak_16474 chr4 145731496 145731543 + 4.92395 NA Intergenic L1HS|LINE|L1 -164348 NR_037595 646576 Hs.632595 NR_037595 ENSG00000248890 HHIP-AS1 - HHIP antisense RNA 1 ncRNA 16-PTNLD14-TUMOR_peak_20994 chr8 52628665 52628712 + 4.92395 NA intron (NM_144651, intron 1 of 22) intron (NM_144651, intron 1 of 22) 93317 NM_144651 137902 Hs.444882 NM_144651 HPRD:08693 PXDNL PMR1|PRM1|VPO2 peroxidasin homolog (Drosophila)-like protein-coding 16-PTNLD14-TUMOR_peak_12029 chr2 128545435 128545486 + 4.92395 NA intron (NM_001006623, intron 1 of 7) SVA_F|Other|Other 23301 NM_001006622 55339 Hs.554831 NM_018383 HPRD:11680 WDR33 NET14|WDC146 WD repeat domain 33 protein-coding 16-PTNLD14-TUMOR_peak_16466 chr4 144816735 144816812 + 4.91388 NA intron (NM_002102, intron 1 of 3) L1PA3|LINE|L1 9943 NM_002102 2996 Hs.654368 NM_002102 HPRD:00723 GYPE GPE|MNS|MiIX glycophorin E (MNS blood group) protein-coding 16-PTNLD14-TUMOR_peak_9397 chr18 12658040 12658143 + 4.91388 NA promoter-TSS (NM_001128626) promoter-TSS (NM_001128626) -179 NM_001128626 56907 Hs.515283 NM_020148 HPRD:11600 SPIRE1 Spir-1 spire-type actin nucleation factor 1 protein-coding 16-PTNLD14-TUMOR_peak_4366 chr11 71777082 71777180 + 4.88193 NA intron (NM_001286561, intron 2 of 26) AluSp|SINE|Alu 6217 NR_036123 100422953 NR_036123 miRBase:MI0014195 MIR3165 - microRNA 3165 ncRNA 16-PTNLD14-TUMOR_peak_13729 chr21 47271246 47271344 + 4.88193 NA intron (NM_020528, intron 1 of 13) AluSg|SINE|Alu 1420 NM_020528 54039 Hs.474049 NM_020528 HPRD:10534 PCBP3 ALPHA-CP3 poly(rC) binding protein 3 protein-coding 16-PTNLD14-TUMOR_peak_19046 chr6 148674694 148674741 + 4.88193 NA intron (NM_015278, intron 1 of 19) AluSx|SINE|Alu 10988 NM_015278 23328 Hs.193133 NM_015278 HPRD:06408 SASH1 SH3D6A|dJ323M4|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 16-PTNLD14-TUMOR_peak_10555 chr19 41036670 41036747 + 4.87768 NA intron (NM_025213, intron 1 of 9) intron (NM_025213, intron 1 of 9) 313 NM_025213 57731 Hs.32706 NM_020971 HPRD:09372 SPTBN4 QV|SPNB4|SPTBN3 spectrin, beta, non-erythrocytic 4 protein-coding 16-PTNLD14-TUMOR_peak_7843 chr16 34007289 34007336 + 4.86802 NA Intergenic ALR/Alpha|Satellite|centr -44809 NR_038368 649159 Hs.532675 NM_001040069 ENSG00000256642 LINC00273 NCRNA00273|TOP long intergenic non-protein coding RNA 273 ncRNA 16-PTNLD14-TUMOR_peak_10295 chr19 27734724 27734774 + 4.86164 NA Intergenic ALR/Alpha|Satellite|centr -549626 NR_110688 101927151 Hs.567934 NR_110687 LOC101927151 - uncharacterized LOC101927151 ncRNA 16-PTNLD14-TUMOR_peak_18744 chr6 71656888 71656935 + 4.85070 NA intron (NM_080742, intron 1 of 3) L1PA3|LINE|L1 9877 NM_080742 135152 Hs.713609 NM_080742 B3GAT2 GLCATS beta-1,3-glucuronyltransferase 2 protein-coding 16-PTNLD14-TUMOR_peak_7647 chr16 27150307 27150457 + 4.85070 NA Intergenic (TGG)n|Simple_repeat|Simple_repeat -64425 NM_024773 79831 Hs.145717 NM_024773 HPRD:07836 KDM8 JMJD5 lysine (K)-specific demethylase 8 protein-coding 16-PTNLD14-TUMOR_peak_30 chr1 802151 802281 + 4.85070 NA Intergenic CpG 9966 NR_027055 284593 Hs.449006 NR_027055 ENSG00000230368 FAM41C - family with sequence similarity 41, member C ncRNA 16-PTNLD14-TUMOR_peak_3764 chr11 20711243 20711297 + 4.85070 NA intron (NM_001288713, intron 3 of 20) L1PA3|LINE|L1 20173 NM_001288714 4745 Hs.657172 NM_006157 HPRD:09081 NELL1 IDH3GL|NRP1 NEL-like 1 (chicken) protein-coding 16-PTNLD14-TUMOR_peak_11968 chr2 115825302 115825358 + 4.84185 NA intron (NM_001178037, intron 1 of 25) AluY|SINE|Alu 3083 NM_001178037 57628 Hs.580539 NM_020868 HPRD:07083 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl-peptidase 10 (non-functional) protein-coding 16-PTNLD14-TUMOR_peak_2717 chr10 38816321 38816368 + 4.81646 NA Intergenic (GAATG)n|Satellite|Satellite 99270 NR_024497 399744 Hs.497951 NM_001013665 LINC00999 - long intergenic non-protein coding RNA 999 ncRNA 16-PTNLD14-TUMOR_peak_22090 chr9 78033108 78033214 + 4.80088 NA Intergenic Intergenic 305583 NR_031679 100302287 NR_031679 MIR548H3 MIR548H-3|MIRN548H3|hsa-mir-548h-3 microRNA 548h-3 ncRNA 16-PTNLD14-TUMOR_peak_19054 chr6 148691682 148691765 + 4.80076 NA intron (NM_015278, intron 1 of 19) AluY|SINE|Alu 27994 NM_015278 23328 Hs.193133 NM_015278 HPRD:06408 SASH1 SH3D6A|dJ323M4|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 16-PTNLD14-TUMOR_peak_250 chr1 19294762 19294809 + 4.78920 NA Intergenic AluY|SINE|Alu -11959 NM_001136265 126917 Hs.466625 NM_001136265 ENSG00000169991 IFFO2 - intermediate filament family orphan 2 protein-coding 16-PTNLD14-TUMOR_peak_16247 chr4 103619557 103619605 + 4.78920 NA intron (NM_005908, intron 5 of 16) L1PA3|LINE|L1 62570 NM_005908 4126 Hs.480415 NM_005908 HPRD:02008 MANBA MANB1 mannosidase, beta A, lysosomal protein-coding 16-PTNLD14-TUMOR_peak_20943 chr8 46841951 46842032 + 4.77955 NA Intergenic ALR/Alpha|Satellite|centr -910517 NR_027012 497634 Hs.406982 NR_027012 ENSG00000253314 LINC00293 BEYLA|NCRNA00293 long intergenic non-protein coding RNA 293 ncRNA 16-PTNLD14-TUMOR_peak_10094 chr19 15048711 15048845 + 4.77841 NA Intergenic AluSq2|SINE|Alu -3523 NM_012377 26658 Hs.589620 NM_012377 HPRD:15072 OR7C2 CIT-HSP-87M17|OR19-18|OR7C3 olfactory receptor, family 7, subfamily C, member 2 protein-coding 16-PTNLD14-TUMOR_peak_9939 chr19 10736368 10736443 + 4.76000 NA intron (NM_020428, intron 1 of 21) intron (NM_020428, intron 1 of 21) 234 NM_020428 57153 Hs.534560 NM_020428 HPRD:16198 SLC44A2 CTL2|PP1292 solute carrier family 44 (choline transporter), member 2 protein-coding 16-PTNLD14-TUMOR_peak_12710 chr2 234878022 234878069 + 4.72852 NA intron (NM_024080, intron 15 of 25) AluSp|SINE|Alu 52002 NM_024080 79054 Hs.366053 NM_024080 HPRD:09454 TRPM8 LTRPC6|TRPP8 transient receptor potential cation channel, subfamily M, member 8 protein-coding 16-PTNLD14-TUMOR_peak_10386 chr19 34553023 34553112 + 4.72806 NA Intergenic AluSq2|SINE|Alu -110285 NM_015578 26065 Hs.744009 NM_015578 HPRD:12697 LSM14A C19orf13|FAM61A|RAP55|RAP55A LSM14A, SCD6 homolog A (S. cerevisiae) protein-coding 16-PTNLD14-TUMOR_peak_20911 chr8 43804360 43804479 + 4.72620 NA Intergenic ALR/Alpha|Satellite|centr 656834 NM_001005365 340441 Hs.531579 NM_001002920 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family, member A protein-coding 16-PTNLD14-TUMOR_peak_8017 chr16 60910866 60910999 + 4.72149 NA Intergenic L1HS|LINE|L1 -517265 NM_001282301 729159 NM_001282301 LOC729159 - UPF0607 protein ENSP00000381418-like protein-coding 16-PTNLD14-TUMOR_peak_14269 chr3 13999349 13999396 + 4.72149 NA intron (NR_002223, intron 1 of 2) L1PA5|LINE|L1 20565 NR_002223 348825 Hs.529180 NR_002223 ENSG00000180438 TPRXL - tetra-peptide repeat homeobox-like pseudo 16-PTNLD14-TUMOR_peak_17740 chr5 146223491 146223538 + 4.72149 NA intron (NM_001271899, intron 2 of 9) L1HS|LINE|L1 34834 NM_001271948 5521 Hs.627618 NM_181674 HPRD:05059 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2, regulatory subunit B, beta protein-coding 16-PTNLD14-TUMOR_peak_4886 chr12 4148420 4148469 + 4.72149 NA Intergenic AluY|SINE|Alu -165830 NM_001286521 57097 Hs.657268 NM_020367 HPRD:15101 PARP11 ARTD11|C12orf6|MIB006 poly (ADP-ribose) polymerase family, member 11 protein-coding 16-PTNLD14-TUMOR_peak_1398 chr1 149034330 149034421 + 4.69999 NA intron (NR_104217, intron 2 of 17) HSATII|Satellite|Satellite 75350 NR_104217 101929780 Hs.534675 NR_104217 NBPF25P WI2-925H4.1 neuroblastoma breakpoint family, member 25, pseudogene pseudo 16-PTNLD14-TUMOR_peak_7858 chr16 35183296 35183351 + 4.68175 NA Intergenic L1PA4|LINE|L1 202400 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 FLJ26245 - uncharacterized LOC400533 ncRNA 16-PTNLD14-TUMOR_peak_23325 chrX 63717286 63717333 + 4.68175 NA Intergenic L1PA3|LINE|L1 -101976 NM_017677 55613 Hs.442892 NM_017677 HPRD:06664 MTMR8 - myotubularin related protein 8 protein-coding 16-PTNLD14-TUMOR_peak_16427 chr4 139802950 139802997 + 4.68175 NA Intergenic L1PA3|LINE|L1 -133940 NM_012118 25819 Hs.639842 NM_012118 HPRD:16337 CCRN4L CCR4L|Ccr4c|NOC CCR4 carbon catabolite repression 4-like (S. cerevisiae) protein-coding 16-PTNLD14-TUMOR_peak_15479 chr3 192348427 192348480 + 4.68175 NA intron (NM_004113, intron 2 of 5) AluY|SINE|Alu 96935 NM_004113 2257 Hs.390250 NM_004113 HPRD:03303 FGF12 FGF12B|FHF1 fibroblast growth factor 12 protein-coding 16-PTNLD14-TUMOR_peak_14615 chr3 61383674 61383721 + 4.68175 NA Intergenic L1PA4|LINE|L1 -146564 NM_001166243 2272 Hs.655995 NM_002012 HPRD:03096 FHIT AP3Aase|FRA3B fragile histidine triad protein-coding 16-PTNLD14-TUMOR_peak_22198 chr9 94699093 94699146 + 4.68175 NA intron (NM_004560, intron 1 of 8) AluYa5|SINE|Alu 13325 NM_004560 4920 Hs.98255 NM_004560 HPRD:03822 ROR2 BDB|BDB1|NTRKR2 receptor tyrosine kinase-like orphan receptor 2 protein-coding 16-PTNLD14-TUMOR_peak_6181 chr13 111232915 111233041 + 4.68175 NA Intergenic AluY|SINE|Alu -18907 NM_017817 55647 Hs.743563 NM_017817 HPRD:06694 RAB20 - RAB20, member RAS oncogene family protein-coding 16-PTNLD14-TUMOR_peak_8263 chr16 87902792 87902841 + 4.67663 NA exon (NM_003486, exon 1 of 10) exon (NM_003486, exon 1 of 10) 284 NM_003486 8140 Hs.513797 NM_003486 HPRD:02552 SLC7A5 4F2LC|CD98|D16S469E|E16|LAT1|MPE16|hLAT1 solute carrier family 7 (amino acid transporter light chain, L system), member 5 protein-coding 16-PTNLD14-TUMOR_peak_23873 chrY 13139570 13139618 + 4.66613 NA Intergenic (CATTC)n|Simple_repeat|Simple_repeat 1393795 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 16-PTNLD14-TUMOR_peak_18429 chr6 32563101 32563148 + 4.65766 NA Intergenic SVA_F|Other|Other -5511 NM_002124 3123 Hs.534322 NM_002124 HPRD:08349 HLA-DRB1 DRB1|DRw10|HLA-DR1B|HLA-DRB|SS1 major histocompatibility complex, class II, DR beta 1 protein-coding 16-PTNLD14-TUMOR_peak_3585 chr11 3516236 3516297 + 4.64463 NA Intergenic L1PA4|LINE|L1 -103121 NR_044999 10821 Hs.637689 NR_044999 ENSG00000189398 OR7E12P HG1058|OR11-3|OR7E58P|OR7E79P|OR7E81P|OST021 olfactory receptor, family 7, subfamily E, member 12 pseudogene pseudo 16-PTNLD14-TUMOR_peak_9297 chr18 10964 11065 + 4.64023 NA Intergenic TAR1|Satellite|telo -1061 NR_110795 102723376 Hs.606852 NR_110795 LOC102723376 - uncharacterized LOC102723376 ncRNA 16-PTNLD14-TUMOR_peak_21974 chr9 66783310 66783357 + 4.63366 NA Intergenic ALR/Alpha|Satellite|centr -139634 NR_121570 101928381 Hs.708686 NR_121570 LOC101928381 - uncharacterized LOC101928381 ncRNA 16-PTNLD14-TUMOR_peak_15533 chr3 196055891 196055938 + 4.60977 NA intron (NR_037950, intron 1 of 5) AluSc8|SINE|Alu 9377 NR_037950 100534611 Hs.733180 NR_037950 TM4SF19-TCTEX1D2 - TM4SF19-TCTEX1D2 readthrough (NMD candidate) ncRNA 16-PTNLD14-TUMOR_peak_21690 chr9 11409301 11409349 + 4.60604 NA Intergenic AluY|SINE|Alu 796119 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 16-PTNLD14-TUMOR_peak_16311 chr4 117420870 117420917 + 4.60604 NA Intergenic AluY|SINE|Alu 200012 NR_031737 100302290 NR_031737 MIR1973 hsa-mir-1973 microRNA 1973 ncRNA 16-PTNLD14-TUMOR_peak_22647 chr9 140273646 140273720 + 4.60604 NA intron (NR_104598, intron 4 of 10) CpG 44031 NM_001286823 54932 Hs.495553 NM_017820 HPRD:07906 EXD3 mut-7 exonuclease 3'-5' domain containing 3 protein-coding 16-PTNLD14-TUMOR_peak_4414 chr11 75253021 75253177 + 4.60604 NA Intergenic (CTCTG)n|Simple_repeat|Simple_repeat -16500 NM_030792 81544 Hs.503297 NM_030792 HPRD:15159 GDPD5 GDE2|PP1665 glycerophosphodiester phosphodiesterase domain containing 5 protein-coding 16-PTNLD14-TUMOR_peak_2496 chr10 14610377 14610595 + 4.60604 NA intron (NM_001282695, intron 2 of 5) intron (NM_001282695, intron 2 of 5) 3702 NM_001282699 83641 Hs.446315 NM_031453 HPRD:12575 FAM107B C10orf45 family with sequence similarity 107, member B protein-coding 16-PTNLD14-TUMOR_peak_22238 chr9 98822478 98822553 + 4.60604 NA Intergenic AluSc8|SINE|Alu -5606 NR_033838 158435 Hs.652615 NR_033838 LOC158435 - uncharacterized LOC158435 ncRNA 16-PTNLD14-TUMOR_peak_7773 chr16 32821099 32821191 + 4.60321 NA Intergenic Intergenic 75318 NR_003083 386757 Hs.433146 NM_198857 HPRD:13479 SLC6A10P CT-2|CT2|SLC6A10|SLC6A10pA solute carrier family 6 (neurotransmitter transporter), member 10, pseudogene pseudo 16-PTNLD14-TUMOR_peak_1503 chr1 152375681 152375756 + 4.58128 NA Intergenic L1PA3|LINE|L1 11032 NM_016190 49860 Hs.242057 NM_016190 HPRD:12720 CRNN C1orf10|DRC1|PDRC1|SEP53 cornulin protein-coding 16-PTNLD14-TUMOR_peak_12700 chr2 234830519 234830613 + 4.56790 NA intron (NM_024080, intron 1 of 25) AluSx1|SINE|Alu 4523 NM_024080 79054 Hs.366053 NM_024080 HPRD:09454 TRPM8 LTRPC6|TRPP8 transient receptor potential cation channel, subfamily M, member 8 protein-coding 16-PTNLD14-TUMOR_peak_16645 chr4 184200375 184200422 + 4.56790 NA intron (NM_024949, intron 16 of 22) L1PA3|LINE|L1 41529 NM_001111319 53842 Hs.333179 NM_001111319 ENSG00000177300 CLDN22 CLDN21 claudin 22 protein-coding 16-PTNLD14-TUMOR_peak_13734 chr21 47372532 47372581 + 4.54169 NA Intergenic L1PA4|LINE|L1 -20328 NR_109931 101928796 Hs.130919 NR_109931 LOC101928796 - uncharacterized LOC101928796 ncRNA 16-PTNLD14-TUMOR_peak_9406 chr18 13262056 13262404 + 4.54169 NA intron (NM_181482, intron 1 of 5) intron (NM_181482, intron 1 of 5) -15874 NM_181481 753 Hs.731853 NM_004338 HPRD:07358 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 16-PTNLD14-TUMOR_peak_12239 chr2 162397771 162397818 + 4.53094 NA Intergenic L1PA3|LINE|L1 -33381 NR_077058 285116 Hs.470435 NR_077058 AHCTF1P1 AHCTF1P|ELYS-like AT hook containing transcription factor 1 pseudogene 1 pseudo 16-PTNLD14-TUMOR_peak_12934 chr20 21736036 21736085 + 4.53094 NA Intergenic Intergenic 49763 NM_006192 5075 Hs.122310 NM_006192 PAX1 HUP48|OFC2 paired box 1 protein-coding 16-PTNLD14-TUMOR_peak_4727 chr11 125934972 125935115 + 4.52516 NA Intergenic Intergenic -1856 NM_001243597 50937 Hs.38034 NM_016952 HPRD:16372 CDON CDO|CDON1|HPE11|ORCAM cell adhesion associated, oncogene regulated protein-coding 16-PTNLD14-TUMOR_peak_16650 chr4 184427163 184427223 + 4.51535 NA promoter-TSS (NM_001291959) promoter-TSS (NM_001291959) -42 NM_001291959 3622 Hs.107153 NM_001564 HPRD:05021 ING2 ING1L|p33ING2 inhibitor of growth family, member 2 protein-coding 16-PTNLD14-TUMOR_peak_16320 chr4 119559549 119559641 + 4.49750 NA Intergenic Intergenic 8511 NR_103825 729218 Hs.448518 NR_103825 LOC729218 - uncharacterized LOC729218 pseudo 16-PTNLD14-TUMOR_peak_5671 chr12 110072745 110072849 + 4.49564 NA Intergenic (CCA)n|Simple_repeat|Simple_repeat 61297 NM_001114185 4598 Hs.130607 NM_000431 HPRD:02015 MVK LRBP|MK|MVLK|POROK3 mevalonate kinase protein-coding 16-PTNLD14-TUMOR_peak_5099 chr12 27537985 27538064 + 4.49562 NA intron (NM_001248002, intron 4 of 15) AluSz6|SINE|Alu 52237 NM_001248002 56938 Hs.445447 NM_020183 ARNTL2 BMAL2|CLIF|MOP9|PASD9|bHLHe6 aryl hydrocarbon receptor nuclear translocator-like 2 protein-coding 16-PTNLD14-TUMOR_peak_23694 chrX 136520496 136520582 + 4.49562 NA Intergenic L1PA7|LINE|L1 -127807 NM_003413 7547 Hs.111227 NM_003413 HPRD:02225 ZIC3 HTX|HTX1|VACTERLX|ZNF203 Zic family member 3 protein-coding 16-PTNLD14-TUMOR_peak_11607 chr2 81578689 81578826 + 4.49562 NA Intergenic L1PA2|LINE|L1 115313 NR_110161 100507201 Hs.98589 NR_110161 LOC100507201 - uncharacterized LOC100507201 ncRNA 16-PTNLD14-TUMOR_peak_15174 chr3 148774611 148774689 + 4.49562 NA intron (NM_139048, intron 13 of 25) AluYf4|SINE|Alu -29469 NR_046648 100873945 Hs.742423 NR_046648 ENSG00000239718 HLTF-AS1 - HLTF antisense RNA 1 ncRNA 16-PTNLD14-TUMOR_peak_2792 chr10 42370256 42370304 + 4.49214 NA Intergenic (CATTC)n|Satellite|Satellite 493213 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 16-PTNLD14-TUMOR_peak_10439 chr19 36763233 36763317 + 4.49167 NA Intergenic CpG -38970 NR_029389 100134317 Hs.466550 NR_029389 LOC100134317 - uncharacterized LOC100134317 ncRNA 16-PTNLD14-TUMOR_peak_2850 chr10 42538582 42538672 + 4.48847 NA Intergenic ALR/Alpha|Satellite|centr 324866 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 16-PTNLD14-TUMOR_peak_21175 chr8 91405966 91406020 + 4.45900 NA Intergenic L1PA3|LINE|L1 172277 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 16-PTNLD14-TUMOR_peak_17852 chr5 163207306 163207361 + 4.45900 NA Intergenic L1PA5|LINE|L1 274799 NM_013283 27430 Hs.54642 NM_013283 HPRD:05701 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase II, beta protein-coding 16-PTNLD14-TUMOR_peak_23568 chrX 103559197 103559246 + 4.45900 NA Intergenic AluSx1|SINE|Alu -59622 NM_153448 80712 Hs.223782 NM_153448 HPRD:06503 ESX1 ESX1L|ESXR1 ESX homeobox 1 protein-coding 16-PTNLD14-TUMOR_peak_6412 chr14 43597177 43597305 + 4.45900 NA Intergenic L1PA4|LINE|L1 1379258 NM_032135 84075 Hs.307086 NM_032135 HPRD:12638 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 16-PTNLD14-TUMOR_peak_9364 chr18 9137336 9137436 + 4.45111 NA promoter-TSS (NM_001204056) promoter-TSS (NM_001204056) -175 NM_001204056 23253 Hs.464585 NM_015208 HPRD:12457 ANKRD12 ANCO-2|ANCO1|GAC-1|Nbla00144 ankyrin repeat domain 12 protein-coding 16-PTNLD14-TUMOR_peak_19264 chr7 1803424 1803636 + 4.44155 NA Intergenic Intergenic -21584 NR_120508 101927125 Hs.633957 NR_120508 ENSG00000236081 ELFN1-AS1 MYCLo-2 ELFN1 antisense RNA 1 ncRNA 16-PTNLD14-TUMOR_peak_3158 chr10 82293405 82293532 + 4.44155 NA TTS (NR_120662) TTS (NR_120662) 2230 NR_120661 101929574 Hs.593663 NR_120661 ENSG00000226659 LOC101929574 - uncharacterized LOC101929574 ncRNA 16-PTNLD14-TUMOR_peak_21310 chr8 114919909 114919956 + 4.43500 NA Intergenic L1PA2|LINE|L1 -470690 NM_198123 114788 Hs.91381 NM_052900 HPRD:16329 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 16-PTNLD14-TUMOR_peak_21309 chr8 114919618 114919740 + 4.43500 NA Intergenic L1PA2|LINE|L1 -470437 NM_198123 114788 Hs.91381 NM_052900 HPRD:16329 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 16-PTNLD14-TUMOR_peak_8839 chr17 45697526 45697573 + 4.42325 NA intron (NM_006310, intron 22 of 22) AluSx|SINE|Alu -29655 NM_002265 3837 Hs.532793 NM_002265 KPNB1 IMB1|IPO1|IPOB|Impnb|NTF97 karyopherin (importin) beta 1 protein-coding 16-PTNLD14-TUMOR_peak_20544 chr7 157891952 157891999 + 4.39449 NA intron (NM_130843, intron 9 of 21) C-rich|Low_complexity|Low_complexity 244698 NR_038966 100506585 Hs.661265 NR_038966 ENSG00000233038 LOC100506585 - uncharacterized LOC100506585 ncRNA 16-PTNLD14-TUMOR_peak_5251 chr12 49310355 49310419 + 4.38737 NA intron (NM_033124, intron 3 of 7) SVA_D|Other|Other 8277 NM_001143781 51303 Hs.655103 NM_016594 HPRD:11170 FKBP11 FKBP19 FK506 binding protein 11, 19 kDa protein-coding 16-PTNLD14-TUMOR_peak_12049 chr2 130845297 130845344 + 4.38735 NA intron (NM_001099771, intron 13 of 16) AluY|SINE|Alu -36616 NR_026758 440905 Hs.469918 NM_001013711 HPRD:18454 FAR2P1 - fatty acyl CoA reductase 2 pseudogene 1 ncRNA 16-PTNLD14-TUMOR_peak_13044 chr20 32305308 32305384 + 4.36339 NA intron (NM_007238, intron 1 of 3) AluYa5|SINE|Alu 2790 NM_007238 11264 Hs.654857 NM_007238 HPRD:10177 PXMP4 PMP24 peroxisomal membrane protein 4, 24kDa protein-coding 16-PTNLD14-TUMOR_peak_4427 chr11 76277761 76277808 + 4.35939 NA Intergenic L1PA6|LINE|L1 103260 NM_005512 2615 Hs.151641 NM_005512 HPRD:00667 LRRC32 D11S833E|GARP leucine rich repeat containing 32 protein-coding 16-PTNLD14-TUMOR_peak_8346 chr17 975659 975755 + 4.35338 NA intron (NM_001282149, intron 3 of 17) CpG 6679 NM_001282149 29 Hs.159306 NM_001092 HPRD:02649 ABR MDB active BCR-related protein-coding 16-PTNLD14-TUMOR_peak_17432 chr5 104553869 104553916 + 4.35338 NA Intergenic Eulor2A|DNA?|DNA? 118717 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 16-PTNLD14-TUMOR_peak_20654 chr8 6251844 6251899 + 4.33350 NA Intergenic AluY|SINE|Alu 12198 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 16-PTNLD14-TUMOR_peak_14576 chr3 52520505 52520555 + 4.31955 NA intron (NM_007184, intron 15 of 20) AluSx1|SINE|Alu -8826 NM_015136 23166 Hs.301989 NM_015136 HPRD:09778 STAB1 CLEVER-1|FEEL-1|FELE-1|FEX1|STAB-1 stabilin 1 protein-coding 16-PTNLD14-TUMOR_peak_876 chr1 77378354 77378401 + 4.31955 NA intron (NM_030965, intron 2 of 4) L1PA3|LINE|L1 45191 NM_030965 81849 Hs.303609 NM_030965 ST6GALNAC5 SIAT7E|ST6GalNAcV ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 protein-coding 16-PTNLD14-TUMOR_peak_6033 chr13 52653906 52653964 + 4.31955 NA intron (NM_199289, intron 18 of 21) SVA_D|Other|Other -49096 NR_110306 101929657 Hs.637461 NR_110306 LOC101929657 - uncharacterized LOC101929657 ncRNA 16-PTNLD14-TUMOR_peak_21716 chr9 16977285 16977435 + 4.31955 NA Intergenic SVA_D|Other|Other -106574 NM_017637 54796 Hs.656581 NM_017637 HPRD:12274 BNC2 BSN2 basonuclin 2 protein-coding 16-PTNLD14-TUMOR_peak_23201 chrX 52961447 52961494 + 4.28497 NA Intergenic AluYb8|SINE|Alu 24159 NM_001099684 727866 Hs.6451 NM_001099684 ENSG00000179304 FAM156B TMEM29B family with sequence similarity 156, member B protein-coding 16-PTNLD14-TUMOR_peak_7502 chr16 11673076 11673280 + 4.28157 NA intron (NR_024320, intron 1 of 3) AluYb8|SINE|Alu 7051 NM_004862 9516 Hs.459940 NM_004862 HPRD:10354 LITAF PIG7|SIMPLE|TP53I7 lipopolysaccharide-induced TNF factor protein-coding 16-PTNLD14-TUMOR_peak_6480 chr14 53737015 53737062 + 4.27018 NA Intergenic L1PA2|LINE|L1 116966 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 16-PTNLD14-TUMOR_peak_23585 chrX 107524275 107524324 + 4.25720 NA intron (NM_001287758, intron 3 of 45) L1PA3|LINE|L1 157361 NM_001287760 1288 Hs.145586 NM_001847 HPRD:02364 COL4A6 CXDELq22.3|DELXq22.3|DFNX6 collagen, type IV, alpha 6 protein-coding 16-PTNLD14-TUMOR_peak_17664 chr5 140395019 140395073 + 4.25215 NA Intergenic AluSx|SINE|Alu -35915 NM_013340 29930 Hs.278950 NM_013340 HPRD:08397 PCDHB1 PCDH-BETA1 protocadherin beta 1 protein-coding 16-PTNLD14-TUMOR_peak_391 chr1 32801469 32801871 + 4.25097 NA 5' UTR (NM_023009, exon 1 of 2) 5' UTR (NM_023009, exon 1 of 2) 170 NM_023009 65108 Hs.75061 NM_023009 HPRD:04247 MARCKSL1 F52|MACMARCKS|MLP|MLP1|MRP MARCKS-like 1 protein-coding 16-PTNLD14-TUMOR_peak_10449 chr19 36796172 36796256 + 4.24132 NA Intergenic CpG -6031 NR_029389 100134317 Hs.466550 NR_029389 LOC100134317 - uncharacterized LOC100134317 ncRNA 16-PTNLD14-TUMOR_peak_21496 chr8 138574409 138574465 + 4.23264 NA Intergenic L1PA2|LINE|L1 -148606 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 16-PTNLD14-TUMOR_peak_3631 chr11 7757472 7757563 + 4.22932 NA Intergenic L1PA2|LINE|L1 -29576 NM_198185 341277 Hs.532475 NM_198185 HPRD:07139 OVCH2 OVTN ovochymase 2 (gene/pseudogene) protein-coding 16-PTNLD14-TUMOR_peak_14367 chr3 25874805 25874912 + 4.21857 NA Intergenic L1PA5|LINE|L1 40328 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 16-PTNLD14-TUMOR_peak_19174 chr6 165198555 165198665 + 4.21857 NA Intergenic L1PA5|LINE|L1 524501 NM_144980 168090 Hs.144734 NM_144980 HPRD:12844 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 16-PTNLD14-TUMOR_peak_20076 chr7 102073763 102073935 + 4.21796 NA promoter-TSS (NM_032831) promoter-TSS (NM_032831) -128 NM_001126340 80228 Hs.363308 NM_032831 HPRD:09860 ORAI2 C7orf19|CBCIP2|MEM142B|TMEM142B ORAI calcium release-activated calcium modulator 2 protein-coding 16-PTNLD14-TUMOR_peak_14708 chr3 75568819 75568874 + 4.20393 NA Intergenic AluSc8|SINE|Alu -84580 NR_024241 692099 Hs.591652 NR_024241 ENSG00000244026 FAM86DP FAM86D family with sequence similarity 86, member D, pseudogene pseudo 16-PTNLD14-TUMOR_peak_7078 chr15 69113355 69113402 + 4.18564 NA promoter-TSS (NM_006305) promoter-TSS (NM_006305) -117 NM_006305 8125 Hs.458747 NM_006305 HPRD:09014 ANP32A C15orf1|HPPCn|I1PP2A|LANP|MAPM|PHAP1|PHAPI|PP32 acidic (leucine-rich) nuclear phosphoprotein 32 family, member A protein-coding 16-PTNLD14-TUMOR_peak_21780 chr9 30541715 30541762 + 4.18564 NA Intergenic L1PA3|LINE|L1 -133286 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 16-PTNLD14-TUMOR_peak_15884 chr4 49105358 49105415 + 4.16926 NA Intergenic (CATTC)n|Satellite|Satellite 116727 NM_001286791 80157 Hs.479703 NM_025087 HPRD:08638 CWH43 CWH43-C cell wall biogenesis 43 C-terminal homolog (S. cerevisiae) protein-coding 16-PTNLD14-TUMOR_peak_17428 chr5 103827129 103827176 + 4.15329 NA Intergenic L1PA3|LINE|L1 -608023 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 16-PTNLD14-TUMOR_peak_17558 chr5 130208768 130208815 + 4.12159 NA Intergenic L1PA3|LINE|L1 292250 NR_073488 3094 Hs.483305 NM_005340 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 16-PTNLD14-TUMOR_peak_5180 chr12 38072808 38072908 + 4.10209 NA Intergenic ALR/Alpha|Satellite|centr -637699 NM_001013620 144245 Hs.259305 NM_001013620 ALG10B ALG10|KCR1 ALG10B, alpha-1,2-glucosyltransferase protein-coding 16-PTNLD14-TUMOR_peak_7930 chr16 50099760 50099807 + 4.08990 NA promoter-TSS (NM_182922) promoter-TSS (NM_182922) -98 NM_182922 55027 Hs.733027 NM_017939 HPRD:07945 HEATR3 SYO1 HEAT repeat containing 3 protein-coding 16-PTNLD14-TUMOR_peak_9628 chr18 62243795 62243842 + 4.08990 NA Intergenic L1PA4|LINE|L1 -316528 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LOC400654 - uncharacterized LOC400654 ncRNA 16-PTNLD14-TUMOR_peak_12153 chr2 148488743 148488829 + 4.08990 NA Intergenic L1PA2|LINE|L1 -113300 NM_001278580 92 Hs.470174 NM_001616 HPRD:00025 ACVR2A ACTRII|ACVR2 activin A receptor, type IIA protein-coding 16-PTNLD14-TUMOR_peak_19193 chr6 169581118 169581165 + 4.08990 NA Intergenic L1PA6|LINE|L1 73068 NM_003247 7058 Hs.371147 NM_003247 HPRD:01766 THBS2 TSP2 thrombospondin 2 protein-coding 16-PTNLD14-TUMOR_peak_13146 chr20 40430590 40430731 + 4.07971 NA Intergenic L1PA5|LINE|L1 -183527 NM_032221 84181 Hs.740645 NM_032221 HPRD:13049 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 16-PTNLD14-TUMOR_peak_20952 chr8 46853205 46853252 + 4.07097 NA Intergenic ALR/Alpha|Satellite|centr -899280 NR_027012 497634 Hs.406982 NR_027012 ENSG00000253314 LINC00293 BEYLA|NCRNA00293 long intergenic non-protein coding RNA 293 ncRNA 16-PTNLD14-TUMOR_peak_14553 chr3 52243283 52243347 + 4.05815 NA intron (NM_199166, intron 8 of 10) AluY|SINE|Alu 11216 NM_199166 211 Hs.476308 NM_000688 HPRD:00505 ALAS1 ALAS|ALAS3|ALASH|MIG4 aminolevulinate, delta-, synthase 1 protein-coding 16-PTNLD14-TUMOR_peak_2642 chr10 30837501 30837548 + 4.05815 NA Intergenic AluSq2|SINE|Alu 81123 NM_183058 119180 Hs.522610 NM_183058 HPRD:14337 LYZL2 - lysozyme-like 2 protein-coding 16-PTNLD14-TUMOR_peak_17772 chr5 149542425 149542509 + 4.02823 NA Intergenic AluSq|SINE|Alu -3877 NM_001804 1044 Hs.1545 NM_001804 HPRD:02849 CDX1 - caudal type homeobox 1 protein-coding 16-PTNLD14-TUMOR_peak_14597 chr3 56985038 56985133 + 4.01553 NA intron (NR_046572, intron 2 of 2) L1PA4|LINE|L1 11017 NR_046572 100874200 Hs.549631 NR_046572 ENSG00000240198 ARHGEF3-AS1 - ARHGEF3 antisense RNA 1 ncRNA 16-PTNLD14-TUMOR_peak_21152 chr8 86839076 86839128 + 3.99599 NA TTS (NR_003594).10 TTS (NR_003594).10 1069 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene) pseudo 16-PTNLD14-TUMOR_peak_18039 chr6 372208 372303 + 3.98910 NA Intergenic Intergenic -19484 NR_046000 3662 Hs.401013 NM_002460 HPRD:03543 IRF4 LSIRF|MUM1|NF-EM5 interferon regulatory factor 4 protein-coding 16-PTNLD14-TUMOR_peak_9923 chr19 10510506 10510563 + 3.98251 NA intron (NM_007065, intron 1 of 7) AluSg|SINE|Alu 3680 NR_031592 100302213 NR_031592 MIR1181 MIRN1181|hsa-mir-1181 microRNA 1181 ncRNA 16-PTNLD14-TUMOR_peak_98 chr1 6289356 6289460 + 3.96678 NA intron (NM_012405, intron 4 of 4) AluSp|SINE|Alu 6636 NM_012405 23463 Hs.515688 NM_012405 HPRD:09321 ICMT HSTE14|MST098|MSTP098|PCCMT|PCMT|PPMT isoprenylcysteine carboxyl methyltransferase protein-coding 16-PTNLD14-TUMOR_peak_8377 chr17 3658315 3658363 + 3.96678 NA intron (NM_002208, intron 12 of 30) C-rich|Low_complexity|Low_complexity 31142 NM_031965 83903 Hs.534059 NM_031965 HPRD:17083 GSG2 HASPIN germ cell associated 2 (haspin) protein-coding 16-PTNLD14-TUMOR_peak_21868 chr9 38069362 38069414 + 3.96678 NA promoter-TSS (NM_003028) promoter-TSS (NM_003028) -178 NM_003028 6461 Hs.521482 NM_003028 SHB bA3J10.2 Src homology 2 domain containing adaptor protein B protein-coding 16-PTNLD14-TUMOR_peak_9129 chr17 73694605 73694740 + 3.96678 NA intron (NM_013260, intron 4 of 10) intron (NM_013260, intron 4 of 10) -22844 NM_001005731 3691 Hs.632226 NM_000213 HPRD:00946 ITGB4 CD104 integrin, beta 4 protein-coding 16-PTNLD14-TUMOR_peak_11227 chr2 26229353 26229400 + 3.96678 NA Intergenic AluSq2|SINE|Alu -23933 NM_002254 3797 Hs.21611 NM_002254 HPRD:04164 KIF3C - kinesin family member 3C protein-coding 16-PTNLD14-TUMOR_peak_3705 chr11 13915926 13915988 + 3.96000 NA Intergenic L1PA5|LINE|L1 -68227 NM_006108 10418 Hs.643864 NM_006108 SPON1 VSGP/F-spondin|f-spondin spondin 1, extracellular matrix protein protein-coding 16-PTNLD14-TUMOR_peak_5046 chr12 21618214 21618301 + 3.92831 NA intron (NM_024854, intron 10 of 11) L1PA5|LINE|L1 27719 NM_024854 79912 Hs.709545 NM_024854 PYROXD1 - pyridine nucleotide-disulphide oxidoreductase domain 1 protein-coding 16-PTNLD14-TUMOR_peak_11558 chr2 72492664 72492741 + 3.92831 NA intron (NM_015189, intron 20 of 21) L1PA3|LINE|L1 -117711 NM_019885 56603 Hs.91546 NM_019885 HPRD:05550 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450, family 26, subfamily B, polypeptide 1 protein-coding 16-PTNLD14-TUMOR_peak_4610 chr11 110421210 110421261 + 3.92831 NA Intergenic L1PA4|LINE|L1 120574 NM_004109 2230 Hs.744 NM_004109 HPRD:00059 FDX1 ADX|FDX|LOH11CR1D ferredoxin 1 protein-coding 16-PTNLD14-TUMOR_peak_2493 chr10 14281359 14281456 + 3.92831 NA intron (NM_018027, intron 2 of 24) AluY|SINE|Alu 91459 NM_018027 55691 Hs.330463 NM_018027 HPRD:13553 FRMD4A FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 16-PTNLD14-TUMOR_peak_7953 chr16 54329997 54330097 + 3.92831 NA Intergenic AluSx|SINE|Alu -9669 NM_024336 79191 Hs.499205 NM_024336 HPRD:17162 IRX3 IRX-1|IRXB1 iroquois homeobox 3 protein-coding 16-PTNLD14-TUMOR_peak_1127 chr1 111711206 111711335 + 3.92831 NA intron (NM_001007794, intron 4 of 8) AluY|SINE|Alu -28432 NM_178454 128338 Hs.485606 NM_178454 HPRD:14685 DRAM2 PRO180|TMEM77|WWFQ154 DNA-damage regulated autophagy modulator 2 protein-coding 16-PTNLD14-TUMOR_peak_21041 chr8 64254822 64254943 + 3.92831 NA Intergenic AluY|SINE|Alu 173320 NM_001277818 253943 Hs.491861 NM_152758 HPRD:08106 YTHDF3 - YTH domain family, member 3 protein-coding 16-PTNLD14-TUMOR_peak_17084 chr5 51314697 51314848 + 3.92831 NA Intergenic L1PA3|LINE|L1 -635606 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 16-PTNLD14-TUMOR_peak_5215 chr12 42743272 42743319 + 3.92831 NA intron (NM_201438, intron 3 of 8) SVA_B|Other|Other 23348 NM_201439 51535 Hs.444157 NM_016488 HPRD:10488 PPHLN1 HSPC232 periphilin 1 protein-coding 16-PTNLD14-TUMOR_peak_19055 chr6 148694839 148694919 + 3.92831 NA intron (NM_015278, intron 1 of 19) AluSz|SINE|Alu 31150 NM_015278 23328 Hs.193133 NM_015278 HPRD:06408 SASH1 SH3D6A|dJ323M4|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 16-PTNLD14-TUMOR_peak_23150 chrX 39041649 39041731 + 3.92831 NA Intergenic L1PA5|LINE|L1 144926 NR_038968 286442 Hs.638478 NR_038968 ENSG00000235304 LINC01281 - long intergenic non-protein coding RNA 1281 ncRNA 16-PTNLD14-TUMOR_peak_16835 chr5 13730611 13730704 + 3.92831 NA intron (NM_001369, intron 68 of 78) AluY|SINE|Alu 213932 NM_001369 1767 Hs.212360 NM_001369 HPRD:04514 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein, axonemal, heavy chain 5 protein-coding 16-PTNLD14-TUMOR_peak_18718 chr6 64537492 64537576 + 3.92831 NA intron (NM_001292009, intron 36 of 43) AluYb8|SINE|Alu 181103 NM_015153 23469 Hs.348921 NM_015153 HPRD:08477 PHF3 - PHD finger protein 3 protein-coding 16-PTNLD14-TUMOR_peak_24058 chrY 27120964 27121011 + 3.92831 NA Intergenic AluYa5|SINE|Alu 77264 NM_001002761 442868 Hs.664724 NM_001002761 HPRD:18658 BPY2C VCY2C basic charge, Y-linked, 2C protein-coding 16-PTNLD14-TUMOR_peak_11970 chr2 115944693 115944848 + 3.92831 NA intron (NM_001004360, intron 1 of 25) AluYb8|SINE|Alu 25086 NM_001004360 57628 Hs.580539 NM_020868 HPRD:07083 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl-peptidase 10 (non-functional) protein-coding 16-PTNLD14-TUMOR_peak_21116 chr8 79104807 79104854 + 3.92831 NA Intergenic L1PA4|LINE|L1 -323506 NM_181839 5569 Hs.433700 NM_006823 HPRD:05828 PKIA PRKACN1 protein kinase (cAMP-dependent, catalytic) inhibitor alpha protein-coding 16-PTNLD14-TUMOR_peak_3341 chr10 118752558 118752605 + 3.92831 NA intron (NM_001258300, intron 2 of 17) AluSc8|SINE|Alu 12507 NM_001127211 57698 Hs.501140 NM_018330 HPRD:11155 KIAA1598 - KIAA1598 protein-coding 16-PTNLD14-TUMOR_peak_12699 chr2 234824601 234824712 + 3.92831 NA Intergenic AluSz6|SINE|Alu -1387 NM_024080 79054 Hs.366053 NM_024080 HPRD:09454 TRPM8 LTRPC6|TRPP8 transient receptor potential cation channel, subfamily M, member 8 protein-coding 16-PTNLD14-TUMOR_peak_23462 chrX 78646547 78646611 + 3.92831 NA Intergenic L1PA4|LINE|L1 -23530 NM_001171581 9452 Hs.17109 NM_004867 HPRD:02200 ITM2A BRICD2A|E25A integral membrane protein 2A protein-coding 16-PTNLD14-TUMOR_peak_18799 chr6 84102123 84102170 + 3.92831 NA intron (NM_002395, intron 3 of 13) intron (NM_002395, intron 3 of 13) 38792 NM_002395 4199 Hs.21160 NM_002395 HPRD:01102 ME1 HUMNDME|MES malic enzyme 1, NADP(+)-dependent, cytosolic protein-coding 16-PTNLD14-TUMOR_peak_9674 chr18 76189578 76189642 + 3.92831 NA Intergenic Intergenic -483927 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 16-PTNLD14-TUMOR_peak_14814 chr3 101452573 101452620 + 3.92831 NA intron (NM_024548, intron 6 of 10) AluYa5|SINE|Alu 9102 NM_024548 79598 Hs.444135 NM_024548 HPRD:08014 CEP97 2810403B08Rik|LRRIQ2 centrosomal protein 97kDa protein-coding 16-PTNLD14-TUMOR_peak_22463 chr9 127160172 127160264 + 3.92831 NA intron (NM_002799, intron 5 of 7) AluSz|SINE|Alu 17534 NM_002799 5695 Hs.213470 NM_002799 HPRD:04940 PSMB7 Z proteasome (prosome, macropain) subunit, beta type, 7 protein-coding 16-PTNLD14-TUMOR_peak_19964 chr7 93422232 93422306 + 3.92831 NA Intergenic L1HS|LINE|L1 76029 NR_039796 100616206 NR_039796 miRBase:MI0017280 MIR4652 - microRNA 4652 ncRNA 16-PTNLD14-TUMOR_peak_21043 chr8 64284134 64284193 + 3.92831 NA Intergenic AluY|SINE|Alu 202601 NM_001277818 253943 Hs.491861 NM_152758 HPRD:08106 YTHDF3 - YTH domain family, member 3 protein-coding 16-PTNLD14-TUMOR_peak_16494 chr4 147623444 147623491 + 3.92831 NA Intergenic AluSc|SINE|Alu 63422 NM_004575 5458 Hs.266 NM_004575 HPRD:00220 POU4F2 BRN3.2|BRN3B|Brn-3b POU class 4 homeobox 2 protein-coding 16-PTNLD14-TUMOR_peak_21636 chr9 1940892 1940939 + 3.92831 NA Intergenic AluYa5|SINE|Alu -74304 NM_003070 6595 Hs.298990 NM_003070 HPRD:02483 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 16-PTNLD14-TUMOR_peak_23788 chrX 155016982 155017080 + 3.92831 NA Intergenic L1PA3|LINE|L1 19580 NM_005840 10251 Hs.381912 NM_005840 HPRD:03917 SPRY3 HSPRY3|spry-3 sprouty homolog 3 (Drosophila) protein-coding 16-PTNLD14-TUMOR_peak_18757 chr6 75412295 75412413 + 3.92831 NA Intergenic L1PA3|LINE|L1 503269 NM_080645 1303 Hs.101302 NM_004370 HPRD:00377 COL12A1 BA209D8.1|COL12A1L|DJ234P15.1 collagen, type XII, alpha 1 protein-coding 16-PTNLD14-TUMOR_peak_11431 chr2 53818370 53818417 + 3.92831 NA Intergenic L1PA3|LINE|L1 -176536 NM_001008708 494143 Hs.585944 NM_001008708 HPRD:17418 CHAC2 - ChaC, cation transport regulator homolog 2 (E. coli) protein-coding 16-PTNLD14-TUMOR_peak_22459 chr9 127093329 127093473 + 3.92831 NA intron (NM_001166171, intron 8 of 10) AluSz|SINE|Alu -22351 NR_027406 100129034 Hs.654980 NR_027406 LOC100129034 - uncharacterized LOC100129034 ncRNA 16-PTNLD14-TUMOR_peak_23652 chrX 127981012 127981122 + 3.92831 NA Intergenic L1PA4|LINE|L1 676415 NM_001282874 6594 Hs.152292 NM_003069 HPRD:02055 SMARCA1 ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SNF2LT|SWI|SWI2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 protein-coding 16-PTNLD14-TUMOR_peak_12151 chr2 148127281 148127376 + 3.92831 NA Intergenic AluY|SINE|Alu -474758 NM_001278580 92 Hs.470174 NM_001616 HPRD:00025 ACVR2A ACTRII|ACVR2 activin A receptor, type IIA protein-coding 16-PTNLD14-TUMOR_peak_24054 chrY 25207646 25207693 + 3.92831 NA Intergenic AluYa5|SINE|Alu 77259 NM_001002760 442867 Hs.632848 NM_001002760 HPRD:12530 BPY2B VCY2B basic charge, Y-linked, 2B protein-coding 16-PTNLD14-TUMOR_peak_6884 chr15 30634047 30634183 + 3.92831 NA Intergenic L1PA3|LINE|L1 51749 NM_148911 89832 Hs.510853 NM_139320 HPRD:18704 CHRFAM7A CHRNA7|CHRNA7-DR1|D-10 CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion protein-coding 16-PTNLD14-TUMOR_peak_23655 chrX 128474936 128475073 + 3.92831 NA Intergenic L1PA3|LINE|L1 182478 NM_001282874 6594 Hs.152292 NM_003069 HPRD:02055 SMARCA1 ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SNF2LT|SWI|SWI2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 protein-coding 16-PTNLD14-TUMOR_peak_17422 chr5 101529370 101529527 + 3.92831 NA Intergenic L1HS|LINE|L1 102805 NM_180991 353189 Hs.127648 NM_180991 HPRD:12354 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family, member 4C1 protein-coding 16-PTNLD14-TUMOR_peak_9886 chr19 8931301 8931402 + 3.92831 NA intron (NM_144693, intron 3 of 5) AluSg|SINE|Alu 2214 NM_144693 148156 Hs.659797 NM_144693 HPRD:15841 ZNF558 - zinc finger protein 558 protein-coding 16-PTNLD14-TUMOR_peak_14723 chr3 78735580 78735663 + 3.92831 NA intron (NM_001145845, intron 8 of 28) AluY|SINE|Alu 332988 NM_001145845 6091 Hs.744218 NM_002941 HPRD:03890 ROBO1 DUTT1|SAX3 roundabout, axon guidance receptor, homolog 1 (Drosophila) protein-coding 16-PTNLD14-TUMOR_peak_1923 chr1 187567107 187567195 + 3.92831 NA Intergenic L1HS|LINE|L1 769119 NM_024420 5321 Hs.497200 NM_024420 HPRD:08986 PLA2G4A PLA2G4|cPLA2-alpha phospholipase A2, group IVA (cytosolic, calcium-dependent) protein-coding 16-PTNLD14-TUMOR_peak_2403 chr10 1349569 1349623 + 3.92831 NA intron (NM_018702, intron 3 of 9) L1PA2|LINE|L1 143888 NR_015376 399706 Hs.721191 NM_001010910 HPRD:17990 LINC00200 C10orf139|NCRNA00200 long intergenic non-protein coding RNA 200 ncRNA 16-PTNLD14-TUMOR_peak_24057 chrY 26841392 26841439 + 3.92831 NA Intergenic AluYa5|SINE|Alu 77264 NM_004678 9083 Hs.664724 NM_004678 HPRD:02454 BPY2 BPY2A|VCY2|VCY2A basic charge, Y-linked, 2 protein-coding 16-PTNLD14-TUMOR_peak_23417 chrX 72831533 72831609 + 3.92831 NA intron (NM_001300884, intron 3 of 4) L1PA4|LINE|L1 48587 NM_001039840 53344 Hs.496323 NM_001039840 ENSG00000204116 CHIC1 BRX cysteine-rich hydrophobic domain 1 protein-coding 16-PTNLD14-TUMOR_peak_14199 chr3 5582855 5582954 + 3.92831 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -290964 NR_039953 100616334 NR_039953 miRBase:MI0017437 MIR4790 - microRNA 4790 ncRNA 16-PTNLD14-TUMOR_peak_23422 chrX 72994890 72995028 + 3.92831 NA Intergenic L1PA6|LINE|L1 -17081 NR_003255 9383 Hs.529901 NR_003255 ENSG00000270641 TSIX LINC00013|NCRNA00013|XIST-AS|XIST-AS1|XISTAS TSIX transcript, XIST antisense RNA ncRNA 16-PTNLD14-TUMOR_peak_5734 chr12 115185971 115186097 + 3.92831 NA Intergenic AluSx|SINE|Alu -64065 NM_005996 6926 Hs.744016 NM_005996 HPRD:03373 TBX3 TBX3-ISO|UMS|XHL T-box 3 protein-coding 16-PTNLD14-TUMOR_peak_9098 chr17 71144135 71144208 + 3.92831 NA Intergenic CT-rich|Low_complexity|Low_complexity -16989 NM_001050 6752 Hs.514451 NM_001050 SSTR2 - somatostatin receptor 2 protein-coding 16-PTNLD14-TUMOR_peak_20467 chr7 151517556 151517636 + 3.92831 NA intron (NM_016203, intron 1 of 15) intron (NM_016203, intron 1 of 15) -5639 NM_001040633 51422 Hs.647072 NM_016203 HPRD:04119 PRKAG2 AAKG|AAKG2|CMH6|H91620p|WPWS protein kinase, AMP-activated, gamma 2 non-catalytic subunit protein-coding 16-PTNLD14-TUMOR_peak_24139 chrY 59119988 59120086 + 3.92831 NA Intergenic L1PA3|LINE|L1 19580 NM_005840 10251 Hs.381912 NM_005840 HPRD:03917 SPRY3 HSPRY3|spry-3 sprouty homolog 3 (Drosophila) protein-coding 16-PTNLD14-TUMOR_peak_24045 chrY 22984892 22985015 + 3.92831 NA Intergenic L1PA4|LINE|L1 66999 NM_001039567 140032 Hs.367761 NM_001039567 HPRD:15960 RPS4Y2 RPS4Y2P ribosomal protein S4, Y-linked 2 protein-coding 16-PTNLD14-TUMOR_peak_3958 chr11 48034395 48034442 + 3.92287 NA intron (NM_002843, intron 1 of 24) AluSx|SINE|Alu 32308 NM_002843 5795 Hs.318547 NM_002843 HPRD:02955 PTPRJ CD148|DEP1|HPTPeta|R-PTP-ETA|SCC1 protein tyrosine phosphatase, receptor type, J protein-coding 16-PTNLD14-TUMOR_peak_3882 chr11 36436341 36436493 + 3.91987 NA intron (NM_024841, intron 4 of 9) L1PA3|LINE|L1 13870 NM_001160169 79899 Hs.19987 NM_024841 HPRD:07854 PRR5L PROTOR2 proline rich 5 like protein-coding 16-PTNLD14-TUMOR_peak_22116 chr9 83276997 83277044 + 3.91987 NA Intergenic L1PA4|LINE|L1 687082 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 - long intergenic non-protein coding RNA 1507 ncRNA 16-PTNLD14-TUMOR_peak_5726 chr12 115083429 115083554 + 3.91987 NA Intergenic AluY|SINE|Alu 38478 NM_016569 6926 Hs.744016 NM_005996 HPRD:03373 TBX3 TBX3-ISO|UMS|XHL T-box 3 protein-coding 16-PTNLD14-TUMOR_peak_20567 chr7 158460710 158460757 + 3.91987 NA intron (NM_001281933, intron 13 of 27) intron (NM_001281933, intron 13 of 27) 36789 NR_104054 54892 Hs.18616 NM_017760 HPRD:10539 NCAPG2 CAP-G2|CAPG2|LUZP5|MTB|hCAP-G2 non-SMC condensin II complex, subunit G2 protein-coding 16-PTNLD14-TUMOR_peak_17326 chr5 86354713 86354841 + 3.91987 NA Intergenic L1PA3|LINE|L1 55994 NR_036243 100422887 NR_036243 miRBase:MI0015889 MIR4280 - microRNA 4280 ncRNA 16-PTNLD14-TUMOR_peak_14959 chr3 125573366 125573452 + 3.89842 NA intron (NR_125396, intron 2 of 2) L1PA4|LINE|L1 31511 NR_125396 101927056 Hs.744344 NR_125395 LOC101927056 - uncharacterized LOC101927056 ncRNA 16-PTNLD14-TUMOR_peak_16381 chr4 123733086 123733191 + 3.89682 NA Intergenic SVA_D|Other|Other -14725 NM_002006 2247 Hs.284244 NM_002006 HPRD:00622 FGF2 BFGF|FGF-2|FGFB|HBGF-2 fibroblast growth factor 2 (basic) protein-coding 16-PTNLD14-TUMOR_peak_16091 chr4 66047551 66047679 + 3.89682 NA Intergenic L1PA2|LINE|L1 -177397 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LOC401134 - uncharacterized LOC401134 ncRNA 16-PTNLD14-TUMOR_peak_21808 chr9 33796460 33796507 + 3.88335 NA intron (NM_002771, intron 1 of 4) intron (NM_002771, intron 1 of 4) 924 NM_002771 5646 Hs.654513 NM_002771 HPRD:06685 PRSS3 MTG|PRSS4|T9|TRY3|TRY4 protease, serine, 3 protein-coding 16-PTNLD14-TUMOR_peak_8334 chr17 697718 697765 + 3.87008 NA Intergenic AluY|SINE|Alu -12170 NM_016080 51031 Hs.279061 NM_016080 HPRD:12678 GLOD4 C17orf25|HC71 glyoxalase domain containing 4 protein-coding 16-PTNLD14-TUMOR_peak_19229 chr7 401359 401823 + 3.85506 NA Intergenic C-rich|Low_complexity|Low_complexity -17800 NR_033960 442497 Hs.704269 NR_033960 ENSG00000249574 LOC442497 - uncharacterized LOC442497 ncRNA 16-PTNLD14-TUMOR_peak_20374 chr7 143454781 143454833 + 3.85506 NA promoter-TSS (NM_178561) promoter-TSS (NM_178561) 36 NM_178561 340307 Hs.676333 NM_178561 ENSG00000271321 CTAGE6 CTAGE6P CTAGE family, member 6 protein-coding 16-PTNLD14-TUMOR_peak_20106 chr7 103373773 103373880 + 3.84648 NA intron (NM_005045, intron 6 of 64) L1PA2|LINE|L1 256137 NM_005045 5649 Hs.655654 NM_005045 HPRD:02742 RELN LIS2|PRO1598|RL reelin protein-coding 16-PTNLD14-TUMOR_peak_20559 chr7 158278150 158278253 + 3.83525 NA intron (NM_130842, intron 1 of 21) SUBTEL_sa|Satellite|Satellite 47304 NR_030325 693180 NR_030325 MIR595 MIRN595|hsa-mir-595 microRNA 595 ncRNA 16-PTNLD14-TUMOR_peak_14285 chr3 15010213 15010263 + 3.81458 NA intron (NM_001291694, intron 1 of 13) L1PA3|LINE|L1 -20290 NR_046251 100505641 Hs.517821 NR_046251 ENSG00000225733 FGD5-AS1 - FGD5 antisense RNA 1 ncRNA 16-PTNLD14-TUMOR_peak_20199 chr7 128309279 128309388 + 3.81304 NA Intergenic AluYa5|SINE|Alu -2987 NM_001290255 346653 Hs.445236 NM_001012454 HPRD:17840 FAM71F2 FAM137B family with sequence similarity 71, member F2 protein-coding 16-PTNLD14-TUMOR_peak_9218 chr17 79009565 79009706 + 3.81099 NA intron (NM_006340, intron 1 of 14) CpG 688 NM_006340 10458 Hs.128316 NM_006340 HPRD:05686 BAIAP2 BAP2|FLAF3|IRSP53 BAI1-associated protein 2 protein-coding 16-PTNLD14-TUMOR_peak_526 chr1 37501465 37501544 + 3.79835 NA Intergenic Intergenic -1660 NM_000831 2899 Hs.128848 NM_000831 HPRD:00691 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate receptor, ionotropic, kainate 3 protein-coding 16-PTNLD14-TUMOR_peak_7333 chr16 845488 845544 + 3.79280 NA intron (NM_022092, intron 16 of 21) C-rich|Low_complexity|Low_complexity 5217 NM_016541 51764 Hs.247888 NM_016541 HPRD:12116 GNG13 G(gamma)13|h2-35 guanine nucleotide binding protein (G protein), gamma 13 protein-coding 16-PTNLD14-TUMOR_peak_20697 chr8 12417147 12417271 + 3.78975 NA intron (NR_047662, intron 8 of 8) AluY|SINE|Alu 105911 NR_047662 729732 Hs.322761 NR_047662 LOC729732 - uncharacterized LOC729732 ncRNA 16-PTNLD14-TUMOR_peak_8325 chr17 165268 165369 + 3.78192 NA intron (NM_001190411, intron 4 of 8) intron (NM_001190411, intron 4 of 8) -15678 NM_001242780 100506388 Hs.627744 NM_001242780 LOC100506388 - uncharacterized LOC100506388 protein-coding 16-PTNLD14-TUMOR_peak_23682 chrX 133995193 133995240 + 3.73992 NA Intergenic AluSg|SINE|Alu 53993 NM_138819 159091 Hs.269127 NM_138819 HPRD:06615 FAM122C - family with sequence similarity 122C protein-coding 16-PTNLD14-TUMOR_peak_22193 chr9 94571160 94571266 + 3.73992 NA intron (NM_004560, intron 1 of 8) AluY|SINE|Alu 141231 NM_004560 4920 Hs.98255 NM_004560 HPRD:03822 ROR2 BDB|BDB1|NTRKR2 receptor tyrosine kinase-like orphan receptor 2 protein-coding 16-PTNLD14-TUMOR_peak_8677 chr17 29792911 29792958 + 3.73238 NA intron (NM_032932, intron 3 of 14) AluSc8|SINE|Alu -68967 NR_039877 100616248 NR_039877 miRBase:MI0017361 MIR4724 - microRNA 4724 ncRNA 16-PTNLD14-TUMOR_peak_12785 chr2 242838721 242838768 + 3.70626 NA intron (NR_110220, intron 2 of 3) G-rich|Low_complexity|Low_complexity 15230 NR_110220 101927289 Hs.130180 NR_110220 ENSG00000233806 LINC01237 - long intergenic non-protein coding RNA 1237 ncRNA 16-PTNLD14-TUMOR_peak_4661 chr11 117176690 117176743 + 3.70626 NA intron (NM_138972, intron 1 of 8) AluY|SINE|Alu 10256 NM_012104 23621 Hs.504003 NM_012104 HPRD:07255 BACE1 ASP2|BACE|HSPC104 beta-site APP-cleaving enzyme 1 protein-coding 16-PTNLD14-TUMOR_peak_1048 chr1 102999518 102999586 + 3.69096 NA Intergenic L1P1|LINE|L1 -536762 NR_110211 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 16-PTNLD14-TUMOR_peak_12743 chr2 238456403 238456471 + 3.68631 NA intron (NR_104019, intron 14 of 16) intron (NR_104019, intron 14 of 16) -18780 NM_015893 51052 Hs.247710 NM_015893 HPRD:04046 PRLH PRH|PRRP prolactin releasing hormone protein-coding 16-PTNLD14-TUMOR_peak_17528 chr5 125256062 125256196 + 3.67150 NA Intergenic L1PA3|LINE|L1 -259141 NR_105042 102546228 Hs.582529 NR_105042 LOC102546228 - uncharacterized LOC102546228 ncRNA 16-PTNLD14-TUMOR_peak_6475 chr14 53418207 53418332 + 3.65116 NA promoter-TSS (NM_001134999) promoter-TSS (NM_001134999) -454 NM_006832 10979 Hs.509343 NM_006832 HPRD:06374 FERMT2 KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 fermitin family member 2 protein-coding 16-PTNLD14-TUMOR_peak_11416 chr2 48970909 48970956 + 3.63790 NA intron (NM_000233, intron 1 of 10) L1PA3|LINE|L1 11948 NM_000233 3973 Hs.468490 NM_000233 HPRD:01073 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 16-PTNLD14-TUMOR_peak_6419 chr14 44974199 44974278 + 3.63790 NA exon (NM_032135, exon 1 of 1) exon (NM_032135, exon 1 of 1) 2261 NM_032135 84075 Hs.307086 NM_032135 HPRD:12638 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 16-PTNLD14-TUMOR_peak_520 chr1 37097980 37098077 + 3.63790 NA Intergenic AluYb8|SINE|Alu -149113 NM_156039 1441 Hs.524517 NM_000760 HPRD:00737 CSF3R CD114|GCSFR colony stimulating factor 3 receptor (granulocyte) protein-coding 16-PTNLD14-TUMOR_peak_16110 chr4 71194652 71194781 + 3.63790 NA Intergenic L1HS|LINE|L1 -5955 NM_033122 85438 Hs.120316 NM_033122 HPRD:14865 CABS1 C4orf35|CLPH|NYD-SP26 calcium-binding protein, spermatid-specific 1 protein-coding 16-PTNLD14-TUMOR_peak_8273 chr16 88613505 88613690 + 3.63307 NA Intergenic G-rich|Low_complexity|Low_complexity -23192 NM_144604 124245 Hs.93670 NM_144604 HPRD:11232 ZC3H18 NHN1 zinc finger CCCH-type containing 18 protein-coding 16-PTNLD14-TUMOR_peak_20392 chr7 145657605 145657690 + 3.60589 NA Intergenic AluY|SINE|Alu -155806 NM_014141 26047 Hs.655684 NM_014141 HPRD:05197 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein-like 2 protein-coding 16-PTNLD14-TUMOR_peak_14566 chr3 52401633 52401743 + 3.57239 NA intron (NM_015512, intron 36 of 77) AluSp|SINE|Alu 42433 NM_004656 8314 Hs.106674 NM_004656 HPRD:04366 BAP1 HUCEP-13|UCHL2 BRCA1 associated protein-1 (ubiquitin carboxy-terminal hydrolase) protein-coding 16-PTNLD14-TUMOR_peak_13827 chr22 19827187 19827239 + 3.56896 NA intron (NM_053004, intron 2 of 7) AluSx1|SINE|Alu 15158 NM_024627 79680 Hs.105642 NM_024627 HPRD:13382 C22orf29 BOP chromosome 22 open reading frame 29 protein-coding 16-PTNLD14-TUMOR_peak_983 chr1 93676579 93676772 + 3.54015 NA intron (NM_206886, intron 10 of 27) AluSg|SINE|Alu 30402 NM_206886 343099 Hs.482873 NM_206886 ENSG00000122483 CCDC18 NY-SAR-41 coiled-coil domain containing 18 protein-coding 16-PTNLD14-TUMOR_peak_16724 chr5 302021 302143 + 3.53648 NA intron (NM_001267557, intron 2 of 3) intron (NM_001267557, intron 2 of 3) -2209 NM_020731 57491 Hs.50823 NM_020731 HPRD:07356 AHRR AHH|AHHR|bHLHe77 aryl-hydrocarbon receptor repressor protein-coding 16-PTNLD14-TUMOR_peak_11660 chr2 87723477 87723562 + 3.53131 NA Intergenic (CAGC)n|Simple_repeat|Simple_repeat -31455 NR_024204 112597 Hs.652166 NM_052871 HPRD:14654 LINC00152 C2orf59|NCRNA00152 long intergenic non-protein coding RNA 152 ncRNA 16-PTNLD14-TUMOR_peak_13821 chr22 19804895 19804972 + 3.51511 NA intron (NM_053004, intron 4 of 7) AluSc5|SINE|Alu 37438 NM_024627 79680 Hs.105642 NM_024627 HPRD:13382 C22orf29 BOP chromosome 22 open reading frame 29 protein-coding 16-PTNLD14-TUMOR_peak_11481 chr2 63067941 63068028 + 3.50888 NA intron (NM_001142614, intron 6 of 22) L1PA2|LINE|L1 133952 NM_001142614 23301 Hs.271667 NM_015252 HPRD:10109 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 16-PTNLD14-TUMOR_peak_12129 chr2 138473887 138473986 + 3.50888 NA Intergenic LTR12C|LTR|ERV1 211566 NR_120402 101928273 Hs.560928 NR_120402 ENSG00000234007 LOC101928273 - uncharacterized LOC101928273 ncRNA 16-PTNLD14-TUMOR_peak_8136 chr16 72973568 72973692 + 3.47716 NA intron (NM_001164766, intron 2 of 8) AluSx1|SINE|Alu 108644 NM_006885 463 Hs.598297 NM_006885 HPRD:00075 ZFHX3 ATBF1|ATBT|ZNF927 zinc finger homeobox 3 protein-coding 16-PTNLD14-TUMOR_peak_687 chr1 46705920 46705988 + 3.47473 NA Intergenic CpG -7413 NM_001142548 8438 Hs.642042 NM_003579 HPRD:04683 RAD54L HR54|RAD54A|hHR54|hRAD54 RAD54-like (S. cerevisiae) protein-coding 16-PTNLD14-TUMOR_peak_22136 chr9 85839222 85839272 + 3.47473 NA Intergenic L1PA2|LINE|L1 42955 NM_001244962 257019 Hs.127535 NM_174938 HPRD:07402 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 16-PTNLD14-TUMOR_peak_7771 chr16 32790120 32790218 + 3.46267 NA Intergenic Intergenic -102719 NR_110910 24150 Hs.592038 NM_015369 TP53TG3 P53TG3|TP53TG3A TP53 target 3 protein-coding 16-PTNLD14-TUMOR_peak_20927 chr8 43827010 43827101 + 3.46069 NA Intergenic ALR/Alpha|Satellite|centr 679470 NM_001005365 340441 Hs.531579 NM_001002920 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family, member A protein-coding 16-PTNLD14-TUMOR_peak_9852 chr19 7927420 7927524 + 3.41663 NA intron (NM_145245, intron 16 of 18) CpG-12786 11854 NM_001190467 80164 Hs.288540 NM_001080403 ENSG00000183248 FLJ22184 - putative uncharacterized protein FLJ22184 protein-coding 16-PTNLD14-TUMOR_peak_19191 chr6 169309878 169310087 + 3.41663 NA Intergenic CpG 344227 NM_003247 7058 Hs.371147 NM_003247 HPRD:01766 THBS2 TSP2 thrombospondin 2 protein-coding 16-PTNLD14-TUMOR_peak_2392 chr10 769468 769563 + 3.39932 NA Intergenic Intergenic -33907 NM_014974 22982 Hs.432397 NM_014974 HPRD:17200 DIP2C KIAA0934 DIP2 disco-interacting protein 2 homolog C (Drosophila) protein-coding 16-PTNLD14-TUMOR_peak_11085 chr2 843002 843049 + 3.38622 NA intron (NR_111963, intron 1 of 2) intron (NR_111963, intron 1 of 2) 21087 NR_033880 339822 Hs.651879 NR_033880 ENSG00000237667 LINC01115 - long intergenic non-protein coding RNA 1115 ncRNA 16-PTNLD14-TUMOR_peak_5584 chr12 96234927 96234974 + 3.37717 NA Intergenic SVA_E|Other|Other -17759 NM_003095 6636 Hs.105465 NM_003095 SNRPF SMF|Sm-F|snRNP-F small nuclear ribonucleoprotein polypeptide F protein-coding 16-PTNLD14-TUMOR_peak_15945 chr4 49306126 49306204 + 3.37030 NA Intergenic ACRO1|Satellite|acro 317506 NM_001286791 80157 Hs.479703 NM_025087 HPRD:08638 CWH43 CWH43-C cell wall biogenesis 43 C-terminal homolog (S. cerevisiae) protein-coding 16-PTNLD14-TUMOR_peak_9744 chr19 1682954 1683040 + 3.36940 NA Intergenic AluY|SINE|Alu -30669 NM_003200 6929 Hs.371282 NM_003200 HPRD:00918 TCF3 E2A|E47|ITF1|TCF-3|VDIR|bHLHb21 transcription factor 3 protein-coding 16-PTNLD14-TUMOR_peak_13965 chr22 24828425 24828472 + 3.35526 NA intron (NR_028484, intron 4 of 6) intron (NR_028484, intron 4 of 6) 361 NM_001278497 135 Hs.197029 NM_000675 HPRD:00043 ADORA2A A2aR|ADORA2|RDC8 adenosine A2a receptor protein-coding 16-PTNLD14-TUMOR_peak_14546 chr3 52090576 52090623 + 3.35270 NA promoter-TSS (NM_001947) promoter-TSS (NM_001947) -138 NM_001947 1849 Hs.591664 NM_001947 HPRD:04125 DUSP7 MKPX|PYST2 dual specificity phosphatase 7 protein-coding 16-PTNLD14-TUMOR_peak_23840 chrY 7443273 7443320 + 3.34825 NA Intergenic L1PA3|LINE|L1 125992 NR_001552 252948 Hs.522848 NR_001552 ENSG00000225520 TTTY16 NCRNA00139 testis-specific transcript, Y-linked 16 (non-protein coding) ncRNA 16-PTNLD14-TUMOR_peak_7270 chr15 99547717 99547788 + 3.32769 NA intron (NM_001102612, intron 1 of 4) AluSc|SINE|Alu 1133 NM_001102612 145814 Hs.592021 NM_001102612 ENSG00000183571 PGPEP1L - pyroglutamyl-peptidase I-like protein-coding 16-PTNLD14-TUMOR_peak_21774 chr9 28877843 28877890 + 3.32769 NA intron (NM_001258282, intron 2 of 6) L1PA3|LINE|L1 11087 NR_030618 100126316 NR_030618 miRBase:MI0005564 MIR873 MIRN873|hsa-mir-873 microRNA 873 ncRNA 16-PTNLD14-TUMOR_peak_10740 chr19 49670551 49670624 + 3.31011 NA intron (NM_001195227, intron 3 of 23) (TCTCTG)n|Simple_repeat|Simple_repeat 9571 NM_017636 54795 Hs.467101 NM_017636 HPRD:09502 TRPM4 PFHB1B|TRPM4B transient receptor potential cation channel, subfamily M, member 4 protein-coding 16-PTNLD14-TUMOR_peak_22247 chr9 99002331 99002411 + 3.29834 NA intron (NM_000197, intron 10 of 10) L1PA8|LINE|L1 62063 NM_000197 3293 Hs.477 NM_000197 HPRD:05716 HSD17B3 EDH17B3|SDR12C2 hydroxysteroid (17-beta) dehydrogenase 3 protein-coding 16-PTNLD14-TUMOR_peak_23411 chrX 71901356 71901440 + 3.29834 NA intron (NM_001172436, intron 5 of 29) SVA_F|Other|Other -7401 NR_110391 101928259 Hs.666679 NR_110391 ENSG00000231944 LOC101928259 - uncharacterized LOC101928259 ncRNA 16-PTNLD14-TUMOR_peak_19254 chr7 1235954 1236010 + 3.29834 NA Intergenic Intergenic 35561 NR_110070 101927021 Hs.529566 NR_110065 LOC101927021 - uncharacterized LOC101927021 ncRNA 16-PTNLD14-TUMOR_peak_23425 chrX 73387006 73387123 + 3.29834 NA intron (NR_028379, intron 5 of 6) SVA_D|Other|Other 51232 NR_030398 693122 NR_030398 miRBase:MI0003685 MIR421 MIRN421|hsa-mir-421 microRNA 421 ncRNA 16-PTNLD14-TUMOR_peak_15901 chr4 49130680 49130754 + 3.27555 NA Intergenic (CATTC)n|Satellite|Satellite 142058 NM_001286791 80157 Hs.479703 NM_025087 HPRD:08638 CWH43 CWH43-C cell wall biogenesis 43 C-terminal homolog (S. cerevisiae) protein-coding 16-PTNLD14-TUMOR_peak_10448 chr19 36793663 36793734 + 3.26988 NA Intergenic CpG -8547 NR_029389 100134317 Hs.466550 NR_029389 LOC100134317 - uncharacterized LOC100134317 ncRNA 16-PTNLD14-TUMOR_peak_13978 chr22 25745009 25745063 + 3.26926 NA Intergenic (CAGCC)n|Simple_repeat|Simple_repeat 13488 NM_182492 91355 Hs.634058 NM_182492 HPRD:13200 LRP5L - low density lipoprotein receptor-related protein 5-like protein-coding 16-PTNLD14-TUMOR_peak_8123 chr16 71955777 71955870 + 3.26926 NA intron (NM_001270979, intron 2 of 5) AluY|SINE|Alu 26427 NM_001270978 9798 Hs.232194 NM_014761 IST1 OLC1 increased sodium tolerance 1 homolog (yeast) protein-coding 16-PTNLD14-TUMOR_peak_16727 chr5 352537 352658 + 3.26722 NA intron (NM_020731, intron 2 of 11) intron (NM_020731, intron 2 of 11) 48306 NM_001242412 57491 Hs.50823 NM_020731 HPRD:07356 AHRR AHH|AHHR|bHLHe77 aryl-hydrocarbon receptor repressor protein-coding 16-PTNLD14-TUMOR_peak_6816 chr15 20546050 20546149 + 3.26712 NA Intergenic (CAGC)n|Simple_repeat|Simple_repeat 58102 NR_038836 646096 Hs.448789 NR_038836 CHEK2P2 - checkpoint kinase 2 pseudogene 2 pseudo 16-PTNLD14-TUMOR_peak_20473 chr7 152220022 152220153 + 3.24531 NA Intergenic Intergenic 58878 NR_027387 100128822 Hs.647112 NR_027387 ENSG00000261455 LINC01003 - long intergenic non-protein coding RNA 1003 ncRNA 16-PTNLD14-TUMOR_peak_18191 chr6 15726823 15726962 + 3.24416 NA Intergenic SVA_D|Other|Other -63603 NM_001271669 84062 Hs.571148 NM_032122 HPRD:06190 DTNBP1 BLOC1S8|DBND|HPS7|My031|SDY dystrobrevin binding protein 1 protein-coding 16-PTNLD14-TUMOR_peak_14975 chr3 126587175 126587222 + 3.24140 NA intron (NM_032343, intron 5 of 7) intron (NM_032343, intron 5 of 7) -120239 NM_032242 5361 Hs.432329 NM_032242 HPRD:11868 PLXNA1 NOV|NOVP|PLEXIN-A1|PLXN1 plexin A1 protein-coding 16-PTNLD14-TUMOR_peak_1654 chr1 159496890 159496937 + 3.24140 NA Intergenic L1PA3|LINE|L1 8884 NM_001004469 127385 Hs.553587 NM_001004469 HPRD:14892 OR10J5 OR1-28 olfactory receptor, family 10, subfamily J, member 5 protein-coding 16-PTNLD14-TUMOR_peak_9677 chr18 76701224 76701271 + 3.24140 NA Intergenic C-rich|Low_complexity|Low_complexity -39028 NM_171999 27164 Hs.700557 NM_171999 SALL3 ZNF796 spalt-like transcription factor 3 protein-coding 16-PTNLD14-TUMOR_peak_10387 chr19 34570077 34570168 + 3.19413 NA Intergenic SVA_F|Other|Other -93230 NM_015578 26065 Hs.744009 NM_015578 HPRD:12697 LSM14A C19orf13|FAM61A|RAP55|RAP55A LSM14A, SCD6 homolog A (S. cerevisiae) protein-coding 16-PTNLD14-TUMOR_peak_18051 chr6 2070321 2070413 + 3.18464 NA intron (NM_001500, intron 4 of 10) L1PA3|LINE|L1 105858 NM_001253846 2762 Hs.144496 NM_001500 HPRD:11925 GMDS GMD|SDR3E1 GDP-mannose 4,6-dehydratase protein-coding 16-PTNLD14-TUMOR_peak_12255 chr2 165657705 165657752 + 3.18464 NA intron (NM_001278458, intron 2 of 16) AluY|SINE|Alu -39531 NR_110574 101929633 Hs.570267 NR_110574 LOC101929633 - uncharacterized LOC101929633 ncRNA 16-PTNLD14-TUMOR_peak_10708 chr19 48986409 48986514 + 3.18141 NA TTS (NM_004228) TTS (NM_004228) 13996 NM_017457 9266 Hs.144011 NM_004228 HPRD:03925 CYTH2 ARNO|CTS18|CTS18.1|PSCD2|PSCD2L|SEC7L|Sec7p-L|Sec7p-like cytohesin 2 protein-coding 16-PTNLD14-TUMOR_peak_16504 chr4 150740343 150740450 + 3.15776 NA Intergenic L1PA3|LINE|L1 -259030 NM_001040260 166614 Hs.591683 NM_152619 HPRD:13122 DCLK2 CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2 doublecortin-like kinase 2 protein-coding 16-PTNLD14-TUMOR_peak_314 chr1 26856151 26856226 + 3.15776 NA promoter-TSS (NM_002953) promoter-TSS (NM_002953) -61 NM_002953 6195 Hs.149957 NM_002953 HPRD:03402 RPS6KA1 HU-1|MAPKAPK1A|RSK|RSK1 ribosomal protein S6 kinase, 90kDa, polypeptide 1 protein-coding 16-PTNLD14-TUMOR_peak_20558 chr7 158246700 158246834 + 3.14405 NA intron (NM_130842, intron 1 of 21) intron (NM_130842, intron 1 of 21) 78738 NR_030325 693180 NR_030325 MIR595 MIRN595|hsa-mir-595 microRNA 595 ncRNA 16-PTNLD14-TUMOR_peak_5484 chr12 70045294 70045380 + 3.13003 NA intron (NM_001282614, intron 9 of 9) AluSx1|SINE|Alu 37720 NM_152439 144453 Hs.280782 NM_032735 HPRD:17484 BEST3 VMD2L3 bestrophin 3 protein-coding 16-PTNLD14-TUMOR_peak_21782 chr9 31933596 31933648 + 3.13003 NA Intergenic L1PA3|LINE|L1 -450979 NM_002197 48 Hs.567229 NM_002197 HPRD:00013 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1, soluble protein-coding 16-PTNLD14-TUMOR_peak_16416 chr4 134412842 134412910 + 3.13003 NA Intergenic L1PA3|LINE|L1 342406 NM_020815 57575 Hs.192859 NM_020815 PCDH10 OL-PCDH|PCDH19 protocadherin 10 protein-coding 16-PTNLD14-TUMOR_peak_14652 chr3 66908624 66908689 + 3.13003 NA Intergenic AluSc5|SINE|Alu -140071 NM_032505 84541 Hs.116665 NM_032505 HPRD:18138 KBTBD8 TA-KRP kelch repeat and BTB (POZ) domain containing 8 protein-coding 16-PTNLD14-TUMOR_peak_21431 chr8 133630172 133630348 + 3.12833 NA intron (NM_012472, intron 7 of 11) L1PA3|LINE|L1 -56534 NR_026684 93668 Hs.545218 NR_026684 ENSG00000253521 HPYR1 HPRG1|LINC00027|NCRNA00027 Helicobacter pylori responsive 1 (non-protein coding) ncRNA 16-PTNLD14-TUMOR_peak_6331 chr14 27067386 27067433 + 3.11833 NA promoter-TSS (NM_002515) promoter-TSS (NM_002515) -449 NM_002515 4857 Hs.31588 NM_002515 HPRD:03693 NOVA1 Nova-1 neuro-oncological ventral antigen 1 protein-coding 16-PTNLD14-TUMOR_peak_14009 chr22 30040791 30040929 + 3.10293 NA intron (NM_181833, intron 4 of 4) SVA_D|Other|Other 41315 NM_181832 4771 Hs.187898 NM_000268 HPRD:06980 NF2 ACN|BANF|SCH neurofibromin 2 (merlin) protein-coding 16-PTNLD14-TUMOR_peak_12596 chr2 216944610 216944707 + 3.10293 NA intron (NM_018441, intron 1 of 7) AluSp|SINE|Alu 1881 NM_018441 55825 Hs.281680 NM_018441 HPRD:09320 PECR DCRRP|HPDHASE|HSA250303|PVIARL|SDR29C1|TERP peroxisomal trans-2-enoyl-CoA reductase protein-coding 16-PTNLD14-TUMOR_peak_19605 chr7 61063195 61063254 + 3.09711 NA Intergenic Intergenic 1701210 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 16-PTNLD14-TUMOR_peak_5389 chr12 57824478 57824562 + 3.07641 NA Intergenic Intergenic -3948 NM_005538 3626 Hs.632722 NM_005538 HPRD:03136 INHBC IHBC inhibin, beta C protein-coding 16-PTNLD14-TUMOR_peak_16683 chr4 188342091 188342195 + 3.07641 NA intron (NR_038931, intron 1 of 4) AluYb8|SINE|Alu 84624 NR_038931 339975 Hs.639361 NR_038931 LOC339975 - uncharacterized LOC339975 ncRNA 16-PTNLD14-TUMOR_peak_7079 chr15 69152119 69152210 + 3.05003 NA intron (NR_031680, intron 2 of 4) SVA_D|Other|Other 35861 NR_031680 100313884 NR_031680 miRBase:MI0006414 MIR548H4 MIR548H-4|MIRN548H4|hsa-mir-548h-4 microRNA 548h-4 ncRNA 16-PTNLD14-TUMOR_peak_2522 chr10 17149547 17149620 + 3.03700 NA intron (NM_001081, intron 10 of 66) AluY|SINE|Alu 22233 NM_001081 8029 Hs.166206 NM_001081 HPRD:04296 CUBN IFCR|MGA1|gp280 cubilin (intrinsic factor-cobalamin receptor) protein-coding 16-PTNLD14-TUMOR_peak_18237 chr6 21851646 21851726 + 3.02385 NA intron (NR_015410, intron 4 of 11) SVA_E|Other|Other 185011 NR_015410 401237 Hs.712707 NR_015410 ENSG00000272168 CASC15 LINC00340 cancer susceptibility candidate 15 (non-protein coding) ncRNA 16-PTNLD14-TUMOR_peak_15017 chr3 129943503 129943550 + 3.02385 NA intron (NR_027898, intron 6 of 22) AluY|SINE|Alu 11863 NR_027898 646300 Hs.170475 NR_027898 COL6A4P2 COL6A4 collagen, type VI, alpha 4 pseudogene 2 pseudo 16-PTNLD14-TUMOR_peak_4803 chr11 134360141 134360229 + 3.01729 NA intron (NR_033852, intron 5 of 5) intron (NR_033852, intron 5 of 5) 53809 NR_033852 283177 Hs.504390 NR_033852 LOC283177 - uncharacterized LOC283177 ncRNA 16-PTNLD14-TUMOR_peak_15271 chr3 160690521 160690668 + 2.97238 NA intron (NM_139245, intron 2 of 3) L1PA4|LINE|L1 132089 NM_033169 8706 Hs.418062 NM_003781 HPRD:09119 B3GALNT1 B3GALT3|GLCT3|GLOB|Gb4Cer|P|P1|beta3Gal-T3|galT3 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) protein-coding 16-PTNLD14-TUMOR_peak_16052 chr4 60053332 60053390 + 2.94609 NA Intergenic L1PA3|LINE|L1 -2076810 NM_001253835 3490 Hs.479808 NM_001553 HPRD:04183 IGFBP7 AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF insulin-like growth factor binding protein 7 protein-coding 16-PTNLD14-TUMOR_peak_8405 chr17 6321222 6321321 + 2.89948 NA Intergenic AluSg|SINE|Alu 17181 NM_001285402 23746 Hs.279887 NM_014336 HPRD:05092 AIPL1 AIPL2|LCA4 aryl hydrocarbon receptor interacting protein-like 1 protein-coding 16-PTNLD14-TUMOR_peak_8524 chr17 17346461 17346584 + 2.89714 NA Intergenic SVA_F|Other|Other -33778 NM_018019 55090 Hs.244595 NM_018019 HPRD:14383 MED9 MED25 mediator complex subunit 9 protein-coding 16-PTNLD14-TUMOR_peak_15343 chr3 174018799 174018926 + 2.88065 NA Intergenic AluYa5|SINE|Alu -380276 NR_046664 100874010 Hs.624265 NR_046664 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 16-PTNLD14-TUMOR_peak_21353 chr8 123932221 123932268 + 2.87201 NA intron (NM_014943, intron 2 of 3) AluSq2|SINE|Alu 122419 NM_024295 79139 Hs.241576 NM_024295 HPRD:12302 DERL1 DER-1|DER1 derlin 1 protein-coding 16-PTNLD14-TUMOR_peak_18635 chr6 48707467 48707514 + 2.87201 NA Intergenic L1PA3|LINE|L1 -671065 NM_207499 442213 Hs.659409 NM_207499 HPRD:18470 PTCHD4 C6orf138|dJ402H5.2 patched domain containing 4 protein-coding 16-PTNLD14-TUMOR_peak_20233 chr7 130756687 130756811 + 2.86226 NA intron (NR_109850, intron 2 of 5) MER41B|LTR|ERV1 35040 NR_024153 378805 Hs.150556 NM_001085379 ENSG00000226380 LINC-PINT LincRNA-Pint|MKLN1-AS1|PINT long intergenic non-protein coding RNA, p53 induced transcript ncRNA 16-PTNLD14-TUMOR_peak_10716 chr19 49172663 49172758 + 2.85642 NA intron (NR_004401, intron 3 of 4) (CCA)n|Simple_repeat|Simple_repeat 3554 NM_145807 126147 Hs.326217 NM_145807 HPRD:14031 NTN5 - netrin 5 protein-coding 16-PTNLD14-TUMOR_peak_12127 chr2 138130463 138130569 + 2.85642 NA intron (NM_001080427, intron 11 of 26) L1PA3|LINE|L1 382054 NM_001080427 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin, type I, domain containing 7B protein-coding 16-PTNLD14-TUMOR_peak_18195 chr6 15959874 15959974 + 2.85642 NA Intergenic AluSg|SINE|Alu -169393 NM_013262 29116 Hs.484738 NM_013262 HPRD:17621 MYLIP IDOL|MIR myosin regulatory light chain interacting protein protein-coding 16-PTNLD14-TUMOR_peak_10062 chr19 14878171 14878276 + 2.85642 NA intron (NM_013447, intron 5 of 20) AluY|SINE|Alu 9516 NM_001271052 30817 Hs.531619 NM_013447 HPRD:07308 EMR2 CD312 egf-like module containing, mucin-like, hormone receptor-like 2 protein-coding 16-PTNLD14-TUMOR_peak_23596 chrX 109587181 109587228 + 2.85642 NA intron (NM_001171689, intron 2 of 7) L1PA5|LINE|L1 -25824 NM_001025580 9949 Hs.656243 NM_015365 HPRD:02182 AMMECR1 AMMERC1 Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1 protein-coding 16-PTNLD14-TUMOR_peak_21414 chr8 131711920 131712014 + 2.85642 NA Intergenic L1PA3|LINE|L1 -256061 NM_018482 50807 Hs.655552 NM_018482 HPRD:05809 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 16-PTNLD14-TUMOR_peak_21884 chr9 39504884 39504989 + 2.85642 NA Intergenic AluY|SINE|Alu -40410 NR_003528 401509 Hs.449445 NM_001032297 ENSG00000198416 ZNF658B - zinc finger protein 658B, pseudogene pseudo 16-PTNLD14-TUMOR_peak_16361 chr4 122216144 122216233 + 2.85642 NA Intergenic AluSc8|SINE|Alu -67567 NM_001244764 79931 Hs.208206 NM_024873 HPRD:16268 TNIP3 ABIN-3|LIND TNFAIP3 interacting protein 3 protein-coding 16-PTNLD14-TUMOR_peak_16836 chr5 13747237 13747313 + 2.85642 NA intron (NM_001369, intron 65 of 78) L1PA5|LINE|L1 197314 NM_001369 1767 Hs.212360 NM_001369 HPRD:04514 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein, axonemal, heavy chain 5 protein-coding 16-PTNLD14-TUMOR_peak_6806 chr15 20134173 20134220 + 2.85642 NA Intergenic MER54A|LTR|ERVL -353801 NR_038836 646096 Hs.448789 NR_038836 CHEK2P2 - checkpoint kinase 2 pseudogene 2 pseudo 16-PTNLD14-TUMOR_peak_21898 chr9 41649899 41650004 + 2.85642 NA Intergenic AluY|SINE|Alu -40407 NR_003528 401509 Hs.449445 NM_001032297 ENSG00000198416 ZNF658B - zinc finger protein 658B, pseudogene pseudo 16-PTNLD14-TUMOR_peak_7152 chr15 80445029 80445086 + 2.85642 NA promoter-TSS (NM_000137) promoter-TSS (NM_000137) -176 NM_000137 2184 Hs.73875 NM_000137 HPRD:02040 FAH - fumarylacetoacetate hydrolase (fumarylacetoacetase) protein-coding 16-PTNLD14-TUMOR_peak_17677 chr5 140492955 140493071 + 2.84157 NA Intergenic L1PA4|LINE|L1 -8319 NM_018938 56131 Hs.591250 NM_018938 HPRD:07559 PCDHB4 PCDH-BETA4 protocadherin beta 4 protein-coding 16-PTNLD14-TUMOR_peak_1076 chr1 105866854 105866941 + 2.82383 NA Intergenic AluYb9|SINE|Alu 1251252 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing, apoptosis associated protein 3 pseudogene pseudo 16-PTNLD14-TUMOR_peak_8361 chr17 2008603 2008689 + 2.82082 NA intron (NM_001256827, intron 6 of 11) AluSq|SINE|Alu -16591 NM_001282326 23293 Hs.448342 NM_017575 HPRD:06502 SMG6 C17orf31|EST1A|SMG-6|hSMG5/7a SMG6 nonsense mediated mRNA decay factor protein-coding 16-PTNLD14-TUMOR_peak_15613 chr4 1005360 1005436 + 2.80769 NA promoter-TSS (NM_021923) promoter-TSS (NM_021923) -212 NM_001004356 53834 Hs.193326 NM_021923 HPRD:16163 FGFRL1 FGFR5|FHFR fibroblast growth factor receptor-like 1 protein-coding 16-PTNLD14-TUMOR_peak_5063 chr12 22499422 22499523 + 2.71658 NA Intergenic L1PA4|LINE|L1 -11824 NM_003034 6489 Hs.408614 NM_003034 HPRD:03078 ST8SIA1 GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 protein-coding 16-PTNLD14-TUMOR_peak_19658 chr7 61753786 61753882 + 2.63157 NA Intergenic HSATII|Satellite|Satellite 1010600 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 16-PTNLD14-TUMOR_peak_10586 chr19 42443250 42443297 + 2.60215 NA Intergenic MSR1|Satellite|Satellite 20255 NM_006423 10567 Hs.11417 NM_006423 HPRD:05375 RABAC1 PRA1|PRAF1|YIP3 Rab acceptor 1 (prenylated) protein-coding 16-PTNLD14-TUMOR_peak_8460 chr17 7146329 7146402 + 2.54035 NA promoter-TSS (NM_007278) promoter-TSS (NM_007278) -612 NM_007278 11337 Hs.647421 NM_007278 GABARAP ATG8A|GABARAP-a|MM46 GABA(A) receptor-associated protein protein-coding 16-PTNLD14-TUMOR_peak_14133 chr22 46443029 46443119 + 2.50370 NA Intergenic AluSg|SINE|Alu -2326 NR_027036 100271722 Hs.528519 NR_027036 LINC00899 - long intergenic non-protein coding RNA 899 ncRNA 16-PTNLD14-TUMOR_peak_17807 chr5 152981920 152982047 + 2.43007 NA intron (NM_001258020, intron 3 of 16) L1PA3|LINE|L1 110251 NM_001258022 2890 Hs.519693 NM_000827 HPRD:00695 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate receptor, ionotropic, AMPA 1 protein-coding 16-PTNLD14-TUMOR_peak_18773 chr6 78630009 78630108 + 2.38210 NA intron (NM_001282136, intron 3 of 3) L1PA2|LINE|L1 229685 NM_001282136 101928601 NM_001282136 MEI4 - meiosis-specific 4 homolog (S. cerevisiae) protein-coding 16-PTNLD14-TUMOR_peak_19185 chr6 168378191 168378318 + 2.35904 NA promoter-TSS (NM_001129895) promoter-TSS (NM_001129895) -635 NM_001129895 100128124 Hs.448059 NM_001129895 HGC6.3 - uncharacterized LOC100128124 protein-coding 16-PTNLD14-TUMOR_peak_8102 chr16 70131367 70131414 + 2.35904 NA Intergenic AluYa5|SINE|Alu -16139 NM_017990 55066 Hs.744043 NM_017990 HPRD:17832 PDPR PDP3 pyruvate dehydrogenase phosphatase regulatory subunit protein-coding 16-PTNLD14-TUMOR_peak_6734 chr14 100811777 100811868 + 2.34783 NA intron (NM_173701, intron 7 of 10) SVA_D|Other|Other 22143 NM_207117 283600 Hs.108268 NM_207117 HPRD:16620 SLC25A47 C14orf68|HDMCP solute carrier family 25, member 47 protein-coding 16-PTNLD14-TUMOR_peak_7430 chr16 4381013 4381106 + 2.33124 NA Intergenic AluY|SINE|Alu -1166 NM_032575 84662 Hs.592087 NM_032575 HPRD:12256 GLIS2 NKL|NPHP7 GLIS family zinc finger 2 protein-coding 16-PTNLD14-TUMOR_peak_4600 chr11 108247209 108247262 + 2.27982 NA Intergenic L1PA3|LINE|L1 91023 NM_152587 160140 Hs.653180 NM_152587 HPRD:14579 C11orf65 - chromosome 11 open reading frame 65 protein-coding 16-PTNLD14-TUMOR_peak_7161 chr15 82721330 82721377 + 2.26736 NA promoter-TSS (NM_198181).2 promoter-TSS (NM_198181).2 -832 NM_198181 440295 Hs.498322 NM_198181 HPRD:11262 GOLGA6L9 GOLGA6L20 golgin A6 family-like 9 protein-coding 16-PTNLD14-TUMOR_peak_18040 chr6 396870 396948 + 2.18007 NA intron (NR_046000, intron 4 of 9) intron (NR_046000, intron 4 of 9) 5170 NM_002460 3662 Hs.401013 NM_002460 HPRD:03543 IRF4 LSIRF|MUM1|NF-EM5 interferon regulatory factor 4 protein-coding 16-PTNLD14-TUMOR_peak_19480 chr7 42951198 42951271 + 2.14900 NA intron (NM_001099858, intron 1 of 1) CpG 455 NM_001099858 79020 Hs.698120 NM_024054 HPRD:09861 C7orf25 - chromosome 7 open reading frame 25 protein-coding 16-PTNLD14-TUMOR_peak_19098 chr6 151771885 151771961 + 2.13682 NA intron (NM_017909, intron 1 of 11) SVA_D|Other|Other 1393 NM_017909 55005 Hs.486835 NM_017909 HPRD:09858 RMND1 C6orf96|COXPD11|RMD1|bA351K16|bA351K16.3 required for meiotic nuclear division 1 homolog (S. cerevisiae) protein-coding 16-PTNLD14-TUMOR_peak_6889 chr15 31093245 31093363 + 2.11601 NA Intergenic Intergenic -16935 NR_072991 390561 Hs.721293 NR_072991 HERC2P10 - hect domain and RLD 2 pseudogene 10 pseudo 16-PTNLD14-TUMOR_peak_7047 chr15 60099589 60099654 + 2.11601 NA Intergenic L1PA4|LINE|L1 -117979 NM_004330 663 Hs.592515 NM_004330 HPRD:04481 BNIP2 BNIP-2|NIP2 BCL2/adenovirus E1B 19kDa interacting protein 2 protein-coding 16-PTNLD14-TUMOR_peak_9705 chr19 602232 602305 + 2.08565 NA intron (NM_001194, intron 1 of 7) TAR1|Satellite|telo 12375 NM_001194 610 Hs.124161 NM_001194 HPRD:07213 HCN2 BCNG-2|BCNG2|HAC-1 hyperpolarization activated cyclic nucleotide-gated potassium channel 2 protein-coding Done annotating peaks file