Peak file = 0011.bed
	Genome = hg19
	Organism = human
	Peak/BED file conversion summary:
		BED/Header formatted lines: 248
		peakfile formatted lines: 0
		Duplicated Peak IDs: 0

	Peak File Statistics:
		Total Peaks: 248
		Redundant Peak IDs: 0
		Peaks lacking information: 0 (need at least 5 columns per peak)
		Peaks with misformatted coordinates: 0 (should be integer)
		Peaks with misformatted strand: 0 (should be either +/- or 0/1)

	Peak file looks good!

	Reading Positions...
	-----------------------
	Finding Closest TSS...
	Annotating:........................
		Annotation	Number of peaks	Total size (bp)	Log2 Enrichment
		3UTR	0.0	21942417	-7.948
		miRNA	0.0	48690	-7.948
		ncRNA	0.0	5144737	-7.948
		TTS	3.0	28099294	0.419
		pseudo	0.0	1853996	-7.948
		Exon	8.0	34376117	1.543
		Intron	64.0	1194604745	-0.576
		Intergenic	79.0	1772914566	-0.842
		Promoter	87.0	31334283	5.120
		5UTR	6.0	2504844	4.907
		snoRNA	0.0	119	-7.948
		snRNA	0.0	105	-7.948
	NOTE: If this part takes more than 2 minutes, there is a good chance
		your machine ran out of memory: consider hitting ctrl+C and rerunning
		the command with "-noann"
	To capture annotation stats in a file, use "-annStats <filename>" next time
	Annotating:.........................
		Annotation	Number of peaks	Total size (bp)	Log2 Enrichment
		3UTR	0.0	21942417	-7.954
		Other	11.0	3960244	5.115
		Unknown?	0.0	18108	-7.954
		RNA	0.0	115354	-7.954
		miRNA	0.0	48690	-7.954
		ncRNA	0.0	5144737	-7.954
		TTS	3.0	28099294	0.414
		LINE	25.0	624784865	-1.002
		LINE?	0.0	10448	-7.954
		srpRNA	0.0	254817	-7.954
		SINE	19.0	381068003	-0.684
		RC	0.0	443678	-7.954
		tRNA	0.0	92966	-7.954
		DNA?	0.0	265124	-7.954
		pseudo	0.0	1853996	-7.954
		DNA	0.0	96184594	-7.954
		Exon	8.0	34376117	1.538
		Intron	17.0	634266076	-1.580
		Intergenic	17.0	903853199	-2.091
		Promoter	87.0	31334283	5.115
		5UTR	6.0	2504844	4.902
		snoRNA	0.0	119	-7.954
		LTR?	0.0	21177	-7.954
		scRNA	0.0	116795	-7.954
		CpG-Island	27.0	9345116	5.172
		Low_complexity	4.0	15504854	1.687
		LTR	5.0	260455291	-2.061
		Simple_repeat	10.0	24938270	2.323
		snRNA	1.0	322793	5.273
		Unknown	0.0	1252510	-7.954
		SINE?	0.0	43068	-7.954
		Satellite	8.0	12391565	3.010
		rRNA	0.0	164735	-7.954
	Counting Tags in Peaks from each directory...
	Organism: human
	Loading Gene Informaiton...
	Outputing Annotation File...
PeakID (cmd=annotatePeaks.pl 0011.bed hg19)	Chr	Start	End	Strand	Peak Score	Focus Ratio/Region Size	Annotation	Detailed Annotation	Distance to TSS	Nearest PromoterID	Entrez ID	Nearest Unigene	Nearest Refseq	Nearest Ensembl	Gene Name	Gene Alias	Gene Description	Gene Type
16-PTNLD14-TUMOR_peak_7292	chr15	102083040	102083105	+	20.28656	NA	Intergenic	Intergenic	-52885	NM_138322	5046	Hs.498494	NM_002570	HPRD:01329	PCSK6	PACE4|SPC4	proprotein convertase subtilisin/kexin type 6	protein-coding
16-PTNLD14-TUMOR_peak_13343	chr20	56884543	56884671	+	18.52458	NA	promoter-TSS (NR_003505)	promoter-TSS (NR_003505)	-112	NR_003505	55370	Hs.473179	NM_018498	HPRD:17895	PPP4R1L	C20orf192|PRO1085	protein phosphatase 4, regulatory subunit 1-like	pseudo
16-PTNLD14-TUMOR_peak_3009	chr10	56514749	56514806	+	18.13126	NA	intron (NM_001142769, intron 1 of 35)	AluSx1|SINE|Alu	46274	NM_001142765	65217	Hs.280209	NM_033056	HPRD:05698	PCDH15	CDHR15|DFNB23|USH1F	protocadherin-related 15	protein-coding
16-PTNLD14-TUMOR_peak_19714	chr7	64111437	64111500	+	16.70449	NA	Intergenic	BSR/Beta|Satellite|Satellite	-14993	NM_016220	51427	Hs.50216	NM_016220	HPRD:18669	ZNF107	Y8|ZFD25|ZNF588|smap-7	zinc finger protein 107	protein-coding
16-PTNLD14-TUMOR_peak_3298	chr10	105992648	105992703	+	16.40660	NA	promoter-TSS (NM_025145)	promoter-TSS (NM_025145)	-555	NM_025145	80217	Hs.288927	NM_025145	HPRD:07625	CFAP43	C10orf79|WDR96|bA373N18.2	cilia and flagella associated protein 43	protein-coding
16-PTNLD14-TUMOR_peak_21305	chr8	114580696	114580766	+	16.22407	NA	Intergenic	L1PA3|LINE|L1	-131489	NM_198123	114788	Hs.91381	NM_052900	HPRD:16329	CSMD3	-	CUB and Sushi multiple domains 3	protein-coding
16-PTNLD14-TUMOR_peak_5652	chr12	107828363	107828424	+	15.47463	NA	intron (NM_001018072, intron 1 of 16)	AluJr|SINE|Alu	116196	NM_001018072	121551	Hs.271272	NM_152322	HPRD:12536	BTBD11	ABTB2B	BTB (POZ) domain containing 11	protein-coding
16-PTNLD14-TUMOR_peak_13601	chr21	36085137	36085206	+	15.09327	NA	intron (NM_053277, intron 5 of 5)	(CCCTAA)n|Simple_repeat|Simple_repeat	24308	NR_024351	54064	Hs.436868	NR_024351	ENSG00000230978	LINC00160	C21orf52|NCRNA00160	long intergenic non-protein coding RNA 160	ncRNA
16-PTNLD14-TUMOR_peak_23389	chrX	71371103	71371160	+	14.87018	NA	intron (NM_207422, intron 1 of 1)	AluSc|SINE|Alu	7097	NM_207422	392490	Hs.660859	NM_207422		FLJ44635	-	TPT1-like protein	protein-coding
16-PTNLD14-TUMOR_peak_13765	chr22	17039435	17039510	+	12.96938	NA	Intergenic	(CAGC)n|Simple_repeat|Simple_repeat	34228	NM_014406	150160	Hs.128342	NM_014406	HPRD:16708	CCT8L2	CESK1	chaperonin containing TCP1, subunit 8 (theta)-like 2	protein-coding
16-PTNLD14-TUMOR_peak_22391	chr9	119245083	119245212	+	12.56057	NA	intron (NM_198187, intron 5 of 8)	intron (NM_198187, intron 5 of 8)	-21415	NR_033973	100128505	Hs.675821	NR_033973	ENSG00000229105	ASTN2-AS1	-	ASTN2 antisense RNA 1	ncRNA
16-PTNLD14-TUMOR_peak_1267	chr1	142792919	142792981	+	12.54825	NA	Intergenic	Intergenic	-79345	NR_046228	100874392	Hs.648245	NR_046228		ANKRD20A12P	-	ankyrin repeat domain 20 family, member A12, pseudogene	pseudo
16-PTNLD14-TUMOR_peak_22634	chr9	139768467	139768538	+	12.07121	NA	Intergenic	AluYf4|SINE|Alu	-7714	NM_003792	8721	Hs.174050	NM_003792	HPRD:09235	EDF1	EDF-1|MBF1	endothelial differentiation-related factor 1	protein-coding
16-PTNLD14-TUMOR_peak_7034	chr15	56772011	56772069	+	11.98992	NA	Intergenic	AluY|SINE|Alu	-14705	NM_018365	55329	Hs.444483	NM_018365	HPRD:10967	MNS1	SPATA40	meiosis-specific nuclear structural 1	protein-coding
16-PTNLD14-TUMOR_peak_17286	chr5	79080322	79080385	+	11.94978	NA	intron (NM_153610, intron 9 of 12)	L1HS|LINE|L1	94694	NM_153610	202333	Hs.482625	NM_153610	HPRD:16728	CMYA5	C5orf10|SPRYD2|TRIM76	cardiomyopathy associated 5	protein-coding
16-PTNLD14-TUMOR_peak_524	chr1	37365967	37366029	+	11.75704	NA	intron (NM_000831, intron 1 of 15)	FLAM_A|SINE|Alu	133846	NM_000831	2899	Hs.128848	NM_000831	HPRD:00691	GRIK3	EAA5|GLR7|GLUR7|GluK3|GluR7a	glutamate receptor, ionotropic, kainate 3	protein-coding
16-PTNLD14-TUMOR_peak_23981	chrY	13802243	13802295	+	11.66436	NA	Intergenic	(GAATG)n|Satellite|Satellite	731120	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
16-PTNLD14-TUMOR_peak_17406	chr5	99384491	99384538	+	11.55700	NA	Intergenic	Intergenic	339444	NR_027503	100133050	Hs.534796	NR_027503		LOC100133050	-	glucuronidase, beta pseudogene	pseudo
16-PTNLD14-TUMOR_peak_9721	chr19	1164395	1164691	+	11.41038	NA	intron (NM_014963, intron 1 of 31)	GA-rich|Low_complexity|Low_complexity	9739	NM_014963	22904	Hs.408708	NM_014963	HPRD:17203	SBNO2	KIAA0963|SNO|STNO	strawberry notch homolog 2 (Drosophila)	protein-coding
16-PTNLD14-TUMOR_peak_21056	chr8	66987089	66987169	+	11.31620	NA	intron (NM_033105, intron 3 of 5)	intron (NM_033105, intron 3 of 5)	-52149	NM_184087	84675	Hs.85524	NM_033058	HPRD:05927	TRIM55	MURF-2|RNF29|muRF2	tripartite motif containing 55	protein-coding
16-PTNLD14-TUMOR_peak_13770	chr22	17048189	17048246	+	11.11017	NA	Intergenic	(CAGC)n|Simple_repeat|Simple_repeat	25483	NM_014406	150160	Hs.128342	NM_014406	HPRD:16708	CCT8L2	CESK1	chaperonin containing TCP1, subunit 8 (theta)-like 2	protein-coding
16-PTNLD14-TUMOR_peak_11094	chr2	1569873	1569928	+	10.63313	NA	Intergenic	(CAGC)n|Simple_repeat|Simple_repeat	151720	NM_175721	7173	Hs.467554	NM_000547	HPRD:06000	TPO	MSA|TDH2A|TPX	thyroid peroxidase	protein-coding
16-PTNLD14-TUMOR_peak_23035	chrX	1572675	1572900	+	10.52881	NA	promoter-TSS (NM_001173474)	promoter-TSS (NM_001173474)	-132	NM_001173473	8623	Hs.533514	NM_004192	HPRD:02156	ASMTL	ASMTLX|ASMTLY|ASTML	acetylserotonin O-methyltransferase-like	protein-coding
16-PTNLD14-TUMOR_peak_23803	chrY	1522675	1522900	+	10.52881	NA	promoter-TSS (NM_001173474).2	promoter-TSS (NM_001173474).2	-132	NM_001173473	8623	Hs.533514	NM_004192	HPRD:02156	ASMTL	ASMTLX|ASMTLY|ASTML	acetylserotonin O-methyltransferase-like	protein-coding
16-PTNLD14-TUMOR_peak_16575	chr4	160965755	160965810	+	10.50198	NA	Intergenic	L1PB1|LINE|L1	776784	NM_014247	9693	Hs.744884	NM_014247	ENSG00000109756	RAPGEF2	CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|Rap-GEP|nRap GEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding
16-PTNLD14-TUMOR_peak_8506	chr17	12196745	12196826	+	10.50198	NA	Intergenic	AluYa5|SINE|Alu	211569	NR_030613	100126313		NR_030613		MIR744	MIRN744|hsa-mir-744	microRNA 744	ncRNA
16-PTNLD14-TUMOR_peak_10119	chr19	15889672	15889736	+	10.48169	NA	intron (NR_033864, intron 1 of 9)	(TGAG)n|Simple_repeat|Simple_repeat	1094	NR_033864	388514	Hs.438274	NR_033864		CYP4F24P	-	cytochrome P450, family 4, subfamily F, polypeptide 24, pseudogene	pseudo
16-PTNLD14-TUMOR_peak_149	chr1	9634822	9634873	+	10.37572	NA	intron (NM_032315, intron 5 of 6)	intron (NM_032315, intron 5 of 6)	-14085	NM_001130924	199953	Hs.632365	NM_001010866	HPRD:17991	TMEM201	NET5	transmembrane protein 201	protein-coding
16-PTNLD14-TUMOR_peak_17414	chr5	99389075	99389298	+	10.35014	NA	Intergenic	Intergenic	334772	NR_027503	100133050	Hs.534796	NR_027503		LOC100133050	-	glucuronidase, beta pseudogene	pseudo
16-PTNLD14-TUMOR_peak_12927	chr20	20317981	20318137	+	10.15176	NA	intron (NM_015585, intron 25 of 26)	(TGGA)n|Simple_repeat|Simple_repeat	-30706	NM_002196	3642	Hs.89584	NM_002196	HPRD:02480	INSM1	IA-1|IA1	insulinoma-associated 1	protein-coding
16-PTNLD14-TUMOR_peak_4340	chr11	70946364	70946502	+	9.95848	NA	Intergenic	AluSq|SINE|Alu	-10591	NM_012309	22941	Hs.268726	NM_012309	HPRD:04479	SHANK2	AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3	SH3 and multiple ankyrin repeat domains 2	protein-coding
16-PTNLD14-TUMOR_peak_20437	chr7	150065713	150065889	+	9.81164	NA	promoter-TSS (NM_001099696)	promoter-TSS (NM_001099696)	-78	NM_001099696	29803	Hs.647086	NM_013400	HPRD:17966	REPIN1	AP4|RIP60|ZNF464|Zfp464	replication initiator 1	protein-coding
16-PTNLD14-TUMOR_peak_20395	chr7	145740412	145740460	+	9.56930	NA	Intergenic	L1PA4|LINE|L1	-73017	NM_014141	26047	Hs.655684	NM_014141	HPRD:05197	CNTNAP2	AUTS15|CASPR2|CDFE|NRXN4|PTHSL1	contactin associated protein-like 2	protein-coding
16-PTNLD14-TUMOR_peak_23337	chrX	64598938	64598988	+	9.53646	NA	Intergenic	L1PA3|LINE|L1	-109652	NM_001010888	340554	Hs.21249	NM_001010888	HPRD:16774	ZC3H12B	CXorf32|MCPIP2	zinc finger CCCH-type containing 12B	protein-coding
16-PTNLD14-TUMOR_peak_9358	chr18	8704862	8705248	+	9.25758	NA	intron (NR_120598, intron 1 of 1)	CpG	2564	NR_120598	100287082	Hs.439434	NR_120598	ENSG00000265962	GACAT2	MTCL1-AS1	gastric cancer associated transcript 2 (non-protein coding)	ncRNA
16-PTNLD14-TUMOR_peak_21250	chr8	104096399	104096457	+	9.24074	NA	Intergenic	Intergenic	-56493	NM_024812	79870	Hs.533446	NM_024812	HPRD:09422	BAALC	-	brain and acute leukemia, cytoplasmic	protein-coding
16-PTNLD14-TUMOR_peak_2688	chr10	37890356	37890404	+	9.06908	NA	TTS (NM_001190489)	TTS (NM_001190489)	1479	NM_001190489	100288485	Hs.727092	NM_001190489	ENSG00000256892	MTRNR2L7	HN7	MT-RNR2-like 7	protein-coding
16-PTNLD14-TUMOR_peak_5530	chr12	79571060	79571107	+	9.06908	NA	intron (NM_005639, intron 3 of 10)	L1HS|LINE|L1	131650	NM_001135806	6857	Hs.310545	NM_005639	HPRD:01710	SYT1	P65|SVP65|SYT	synaptotagmin I	protein-coding
16-PTNLD14-TUMOR_peak_6933	chr15	39267045	39267142	+	9.06908	NA	Intergenic	AluYa5|SINE|Alu	-275792	NM_207445	400360	Hs.376109	NM_207445	HPRD:13437	C15orf54	-	chromosome 15 open reading frame 54	protein-coding
16-PTNLD14-TUMOR_peak_23702	chrX	142519104	142519167	+	9.06908	NA	Intergenic	Intergenic	86168	NM_001009609	139067	Hs.447320	NM_001009609	HPRD:18092	SPANXN3	CT11.8|SPANX-N3	SPANX family, member N3	protein-coding
16-PTNLD14-TUMOR_peak_5974	chr13	41270733	41270781	+	9.06908	NA	Intergenic	AluYc|SINE|Alu	-30023	NM_002015	2308	Hs.370666	NM_002015	HPRD:00645	FOXO1	FKH1|FKHR|FOXO1A	forkhead box O1	protein-coding
16-PTNLD14-TUMOR_peak_6920	chr15	36380987	36381044	+	9.06908	NA	Intergenic	L1PA7|LINE|L1	161958	NR_039735	100616293		NR_039735	miRBase:MI0016876	MIR4510	-	microRNA 4510	ncRNA
16-PTNLD14-TUMOR_peak_4229	chr11	65548378	65548696	+	8.98846	NA	promoter-TSS (NM_138368)	promoter-TSS (NM_138368)	-475	NM_138368	91056	Hs.591957	NM_138368		AP5B1	AP-5|PP1030	adaptor-related protein complex 5, beta 1 subunit	protein-coding
16-PTNLD14-TUMOR_peak_23925	chrY	13488857	13488919	+	8.76277	NA	Intergenic	CpG	1044501	NR_033667	352887	Hs.546221	NR_033667	ENSG00000206159	GYG2P1	GYG2P	glycogenin 2 pseudogene 1	pseudo
16-PTNLD14-TUMOR_peak_14540	chr3	51237002	51237054	+	8.63857	NA	intron (NM_004947, intron 12 of 52)	L1PA3|LINE|L1	-185640	NM_006010	7873	Hs.436446	NM_006010	HPRD:03558	MANF	ARMET|ARP	mesencephalic astrocyte-derived neurotrophic factor	protein-coding
16-PTNLD14-TUMOR_peak_22338	chr9	111775731	111775868	+	8.52470	NA	promoter-TSS (NM_001286974)	promoter-TSS (NM_001286974)	75	NM_003798	8727	Hs.58488	NM_003798	HPRD:09210	CTNNAL1	ACRP|CLLP|alpha-CATU	catenin (cadherin-associated protein), alpha-like 1	protein-coding
16-PTNLD14-TUMOR_peak_18016	chr5	179780461	179780593	+	8.50588	NA	promoter-TSS (NM_005110)	promoter-TSS (NM_005110)	-212	NM_005110	9945	Hs.696497	NM_005110	HPRD:04842	GFPT2	GFAT2	glutamine-fructose-6-phosphate transaminase 2	protein-coding
16-PTNLD14-TUMOR_peak_5401	chr12	58335143	58335222	+	8.40853	NA	promoter-TSS (NM_033276)	promoter-TSS (NM_033276)	-263	NM_033276	91419	Hs.61188	NM_033276	HPRD:17256	XRCC6BP1	KUB3	XRCC6 binding protein 1	protein-coding
16-PTNLD14-TUMOR_peak_13164	chr20	42443204	42443262	+	8.31964	NA	Intergenic	L1PA2|LINE|L1	-87591	NM_176791	149699	Hs.447626	NM_176791	HPRD:12778	GTSF1L	C20orf65|FAM112A|dJ1028D15.4	gametocyte specific factor 1-like	protein-coding
16-PTNLD14-TUMOR_peak_15064	chr3	135377925	135377977	+	8.30079	NA	Intergenic	L1PA2|LINE|L1	-306564	NM_001190447	5523	Hs.518155	NM_002718	HPRD:09225	PPP2R3A	PPP2R3|PR130|PR72	protein phosphatase 2, regulatory subunit B'', alpha	protein-coding
16-PTNLD14-TUMOR_peak_7776	chr16	33054942	33055069	+	8.21354	NA	Intergenic	MER54A|LTR|ERVL	-150578	NR_110897	729355	Hs.592038	NM_001099687	ENSG00000261509	TP53TG3B	-	TP53 target 3B	protein-coding
16-PTNLD14-TUMOR_peak_18934	chr6	109704000	109704056	+	8.02066	NA	promoter-TSS (NM_001142401)	promoter-TSS (NM_001142401)	-266	NM_001142401	8763	Hs.520313	NM_006016	HPRD:04523	CD164	MGC-24|MUC-24|endolyn	CD164 molecule, sialomucin	protein-coding
16-PTNLD14-TUMOR_peak_9004	chr17	61043526	61043577	+	7.97958	NA	intron (NR_036146, intron 3 of 3)	CpG	-43347	NM_025185	26115	Hs.410889	NM_015623	ENSG00000170921	TANC2	ROLSA|rols	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding
16-PTNLD14-TUMOR_peak_11646	chr2	87576117	87576244	+	7.95550	NA	Intergenic	TAR1|Satellite|telo	-178794	NR_024204	112597	Hs.652166	NM_052871	HPRD:14654	LINC00152	C2orf59|NCRNA00152	long intergenic non-protein coding RNA 152	ncRNA
16-PTNLD14-TUMOR_peak_8627	chr17	25275551	25275622	+	7.93218	NA	Intergenic	MER54A|LTR|ERVL	345436	NR_039748	100616277		NR_039748	miRBase:MI0016889	MIR4522	-	microRNA 4522	ncRNA
16-PTNLD14-TUMOR_peak_8977	chr17	57921798	57921847	+	7.91637	NA	Intergenic	AluSz|SINE|Alu	3195	NR_029493	406991	Hs.444569	NR_029493	miRBase:MI0000077	MIR21	MIRN21|hsa-mir-21|miR-21|miRNA21	microRNA 21	ncRNA
16-PTNLD14-TUMOR_peak_898	chr1	82601886	82601946	+	7.89821	NA	Intergenic	L1PA3|LINE|L1	335834	NM_012302	23266	Hs.24212	NM_012302	HPRD:06116	LPHN2	CIRL2|CL2|LEC1|LPHH1	latrophilin 2	protein-coding
16-PTNLD14-TUMOR_peak_9774	chr19	3094093	3094294	+	7.74043	NA	promoter-TSS (NM_002067)	promoter-TSS (NM_002067)	-215	NM_002067	2767	Hs.650575	NM_002067		GNA11	FBH|FBH2|FHH2|GNA-11|HHC2|HYPOC2	guanine nucleotide binding protein (G protein), alpha 11 (Gq class)	protein-coding
16-PTNLD14-TUMOR_peak_3247	chr10	101651715	101651762	+	7.68634	NA	intron (NM_015221, intron 11 of 16)	SVA_F|Other|Other	-35228	NR_024130	100188954	Hs.656104	NR_024130		DNMBP-AS1	NCRNA00093|bA287G8.2	DNMBP antisense RNA 1	ncRNA
16-PTNLD14-TUMOR_peak_857	chr1	71077995	71078042	+	7.68634	NA	Intergenic	L1PA2|LINE|L1	201117	NM_001902	1491	Hs.19904	NM_001902	HPRD:09633	CTH	-	cystathionine gamma-lyase	protein-coding
16-PTNLD14-TUMOR_peak_16014	chr4	53766819	53766933	+	7.68634	NA	intron (NM_152540, intron 7 of 8)	L1PA4|LINE|L1	38381	NM_023940	65997	Hs.8035	NM_023940	HPRD:15216	RASL11B	-	RAS-like, family 11, member B	protein-coding
16-PTNLD14-TUMOR_peak_3223	chr10	97803174	97803247	+	7.68634	NA	promoter-TSS (NM_001134376)	promoter-TSS (NM_001134376)	51	NM_019084	54619	Hs.596479	NM_019084	HPRD:07710	CCNJ	bA690P14.1	cyclin J	protein-coding
16-PTNLD14-TUMOR_peak_8502	chr17	11448143	11448190	+	7.68634	NA	intron (NM_001173462, intron 3 of 4)	AluY|SINE|Alu	-53582	NM_001372	1770	Hs.567259	NM_001372	HPRD:04511	DNAH9	DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20	dynein, axonemal, heavy chain 9	protein-coding
16-PTNLD14-TUMOR_peak_20691	chr8	11973271	11973318	+	7.68634	NA	promoter-TSS (NR_027425)	promoter-TSS (NR_027425)	3	NR_027425	100132923	Hs.546711	NR_027425	ENSG00000255052	FAM66D	-	family with sequence similarity 66, member D	ncRNA
16-PTNLD14-TUMOR_peak_11357	chr2	43893072	43893121	+	7.64462	NA	intron (NM_172069, intron 2 of 29)	L1PA2|LINE|L1	10365	NM_001101330	728819	Hs.602756	NM_001101330		LOC728819	-	hCG1645220	protein-coding
16-PTNLD14-TUMOR_peak_3174	chr10	88516158	88516249	+	7.52819	NA	promoter-TSS (NM_004329)	promoter-TSS (NM_004329)	-193	NM_004329	657	Hs.524477	NM_004329		BMPR1A	10q23del|ACVRLK3|ALK3|CD292|SKR5	bone morphogenetic protein receptor, type IA	protein-coding
16-PTNLD14-TUMOR_peak_4551	chr11	96916596	96916728	+	7.48141	NA	Intergenic	L1PA3|LINE|L1	574233	NR_107016	102465857		NR_107016		MIR7976	hsa-mir-7976	microRNA 7976	ncRNA
16-PTNLD14-TUMOR_peak_6729	chr14	100751733	100751844	+	7.38784	NA	Intergenic	CpG	8094	NR_106822	102466730		NR_106822		MIR6764	hsa-mir-6764	microRNA 6764	ncRNA
16-PTNLD14-TUMOR_peak_14663	chr3	66971826	66971946	+	7.29468	NA	Intergenic	AluY|SINE|Alu	-76841	NM_032505	84541	Hs.116665	NM_032505	HPRD:18138	KBTBD8	TA-KRP	kelch repeat and BTB (POZ) domain containing 8	protein-coding
16-PTNLD14-TUMOR_peak_14848	chr3	110356290	110356337	+	7.25427	NA	Intergenic	L1PA3|LINE|L1	432493	NR_045114	100506555	Hs.535689	NR_045114		PVRL3-AS1	-	PVRL3 antisense RNA 1	ncRNA
16-PTNLD14-TUMOR_peak_22771	chrUn_gl000214	117199	117263	+	7.21927	NA	NA	Intergenic	NA	NA								
16-PTNLD14-TUMOR_peak_16490	chr4	147443086	147443144	+	7.20129	NA	promoter-TSS (NM_032128)	promoter-TSS (NM_032128)	8	NM_001300842	84068	Hs.659209	NM_032128	HPRD:13177	SLC10A7	C4orf13|P7	solute carrier family 10, member 7	protein-coding
16-PTNLD14-TUMOR_peak_9488	chr18	25758003	25758062	+	7.12307	NA	promoter-TSS (NM_001792)	promoter-TSS (NM_001792)	-587	NM_001792	1000	Hs.464829	NM_001792	HPRD:00226	CDH2	CD325|CDHN|CDw325|NCAD	cadherin 2, type 1, N-cadherin (neuronal)	protein-coding
16-PTNLD14-TUMOR_peak_12960	chr20	25699823	25699882	+	6.90844	NA	Intergenic	L1PA3|LINE|L1	-22312	NM_015655	26152	Hs.61881	NM_015655	HPRD:15779	ZNF337	-	zinc finger protein 337	protein-coding
16-PTNLD14-TUMOR_peak_8275	chr16	88636506	88636880	+	6.90092	NA	promoter-TSS (NM_001294340)	promoter-TSS (NM_001294340)	-96	NM_144604	124245	Hs.93670	NM_144604	HPRD:11232	ZC3H18	NHN1	zinc finger CCCH-type containing 18	protein-coding
16-PTNLD14-TUMOR_peak_7959	chr16	56228438	56228500	+	6.87161	NA	promoter-TSS (NR_026889)	promoter-TSS (NR_026889)	-32	NR_026889	26077	Hs.721567	NR_026889	ENSG00000261439	DKFZP434H168	-	uncharacterized LOC26077	ncRNA
16-PTNLD14-TUMOR_peak_900	chr1	83821540	83821587	+	6.85638	NA	Intergenic	L1PA2|LINE|L1	-369672	NR_110633	101927498		NR_110632	ENSG00000236268	LINC01361	-	long intergenic non-protein coding RNA 1361	ncRNA
16-PTNLD14-TUMOR_peak_3837	chr11	32914322	32914416	+	6.83889	NA	promoter-TSS (NM_001076786)	promoter-TSS (NM_001076786)	-355	NM_001076786	79832	Hs.369368	NM_024774	HPRD:08645	QSER1	-	glutamine and serine rich 1	protein-coding
16-PTNLD14-TUMOR_peak_506	chr1	36621438	36621528	+	6.81388	NA	promoter-TSS (NM_001286366)	promoter-TSS (NM_001286366)	-83	NM_018067	55700	Hs.356096	NM_018067	HPRD:07666	MAP7D1	PARCC1|RPRC1	MAP7 domain containing 1	protein-coding
16-PTNLD14-TUMOR_peak_17983	chr5	177557661	177557714	+	6.80891	NA	promoter-TSS (NM_001288794)	promoter-TSS (NM_001288794)	-275	NM_022762	64777	Hs.27222	NM_022762	HPRD:07985	RMND5B	GID2|GID2B	required for meiotic nuclear division 5 homolog B (S. cerevisiae)	protein-coding
16-PTNLD14-TUMOR_peak_5627	chr12	104850657	104850718	+	6.77766	NA	promoter-TSS (NM_001173982)	promoter-TSS (NM_001173982)	-5	NM_001173982	50515	Hs.17569	NM_018413	HPRD:13055	CHST11	C4ST|C4ST-1|C4ST1|HSA269537	carbohydrate (chondroitin 4) sulfotransferase 11	protein-coding
16-PTNLD14-TUMOR_peak_3356	chr10	121356170	121356285	+	6.76120	NA	5' UTR (NM_003252, exon 1 of 12)	5' UTR (NM_003252, exon 1 of 12)	314	NM_001033925	7073	Hs.501203	NM_003252		TIAL1	TCBP|TIAR	TIA1 cytotoxic granule-associated RNA binding protein-like 1	protein-coding
16-PTNLD14-TUMOR_peak_241	chr1	19148710	19148775	+	6.62856	NA	Intergenic	AluY|SINE|Alu	37413	NM_152232	80834	Hs.553548	NM_152232	HPRD:06940	TAS1R2	GPR71|T1R2|TR2	taste receptor, type 1, member 2	protein-coding
16-PTNLD14-TUMOR_peak_11773	chr2	92312598	92312650	+	6.58674	NA	Intergenic	ALR/Alpha|Satellite|centr	183465	NR_027714	440888	Hs.730239	NM_001032412	ENSG00000226481	ACTR3BP2	FKSG73	ACTR3B pseudogene 2	pseudo
16-PTNLD14-TUMOR_peak_15655	chr4	3075740	3075798	+	6.54119	NA	promoter-TSS (NM_002111)	promoter-TSS (NM_002111)	-468	NM_002111	3064	Hs.518450	NM_002111	HPRD:00883	HTT	HD|IT15	huntingtin	protein-coding
16-PTNLD14-TUMOR_peak_1723	chr1	166136343	166136495	+	6.44604	NA	promoter-TSS (NM_001017961)	promoter-TSS (NM_001017961)	-461	NM_001017961	149297	Hs.133029	NM_001017961	HPRD:18557	FAM78B	-	family with sequence similarity 78, member B	protein-coding
16-PTNLD14-TUMOR_peak_18100	chr6	5851669	5851716	+	6.41197	NA	Intergenic	CpG	152585	NM_001278711	51299	Hs.103291	NM_016588	HPRD:07592	NRN1	NRN|dJ380B8.2	neuritin 1	protein-coding
16-PTNLD14-TUMOR_peak_9367	chr18	9334436	9334560	+	6.40338	NA	promoter-TSS (NM_020648)	promoter-TSS (NM_020648)	-267	NM_020648	57045	Hs.514685	NM_020648	HPRD:05443	TWSG1	TSG	twisted gastrulation BMP signaling modulator 1	protein-coding
16-PTNLD14-TUMOR_peak_11344	chr2	43217001	43217180	+	6.37802	NA	Intergenic	L1PA3|LINE|L1	49592	NR_110585	102723854	Hs.570165	NR_110585		LOC102723854	-	uncharacterized LOC102723854	ncRNA
16-PTNLD14-TUMOR_peak_21714	chr9	16276422	16276472	+	6.36281	NA	promoter-TSS (NR_073471)	promoter-TSS (NR_073471)	-136	NR_073471	100129385	Hs.586441	NM_001271829	ENSG00000205549	C9orf92	Em:AL513424.1	chromosome 9 open reading frame 92	protein-coding
16-PTNLD14-TUMOR_peak_882	chr1	77868454	77868505	+	6.36281	NA	intron (NM_012093, intron 6 of 13)	L1PA4|LINE|L1	120192	NM_012093	26289	Hs.559718	NM_012093	HPRD:10472	AK5	AK6	adenylate kinase 5	protein-coding
16-PTNLD14-TUMOR_peak_23510	chrX	89602152	89602214	+	6.36281	NA	Intergenic	AluY|SINE|Alu	425243	NM_138960	90316	Hs.592220	NM_138960	HPRD:02328	TGIF2LX	TGIFLX	TGFB-induced factor homeobox 2-like, X-linked	protein-coding
16-PTNLD14-TUMOR_peak_7950	chr16	53826746	53826798	+	6.36281	NA	intron (NM_001080432, intron 1 of 8)	intron (NM_001080432, intron 1 of 8)	88897	NM_001080432	79068	Hs.528833	NM_001080432		FTO	ALKBH9	fat mass and obesity associated	protein-coding
16-PTNLD14-TUMOR_peak_18427	chr6	32562611	32562693	+	6.34972	NA	Intergenic	SVA_F|Other|Other	-5039	NM_002124	3123	Hs.534322	NM_002124	HPRD:08349	HLA-DRB1	DRB1|DRw10|HLA-DR1B|HLA-DRB|SS1	major histocompatibility complex, class II, DR beta 1	protein-coding
16-PTNLD14-TUMOR_peak_7636	chr16	25078184	25078251	+	6.31060	NA	Intergenic	CpG	35155	NR_038379	554206	Hs.552959	NR_038379		LOC554206	-	leucine carboxyl methyltransferase 1 pseudogene	pseudo
16-PTNLD14-TUMOR_peak_6684	chr14	92024509	92024563	+	6.28341	NA	Intergenic	SVA_D|Other|Other	-47712	NM_001284281	55671	Hs.533887	NM_017936	HPRD:11176	SMEK1	FLFL1|KIAA2010|PP4R3A|smk-1|smk1	SMEK homolog 1, suppressor of mek1 (Dictyostelium)	protein-coding
16-PTNLD14-TUMOR_peak_5363	chr12	56570308	56570361	+	6.28115	NA	intron (NM_139067, intron 15 of 28)	AluY|SINE|Alu	13017	NM_139067	6601	Hs.236030	NM_003075	HPRD:03437	SMARCC2	BAF170|CRACC2|Rsc8	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2	protein-coding
16-PTNLD14-TUMOR_peak_13934	chr22	22652365	22652447	+	6.27519	NA	promoter-TSS (NR_027293)	promoter-TSS (NR_027293)	-57	NR_027293	96610	Hs.449601	NM_080926	HPRD:14302	BMS1P20	-	BMS1 pseudogene 20	pseudo
16-PTNLD14-TUMOR_peak_22135	chr9	85678078	85678241	+	6.24184	NA	promoter-TSS (NM_152573)	promoter-TSS (NM_152573)	-116	NM_152573	158158	Hs.129136	NM_152573	HPRD:08337	RASEF	RAB45	RAS and EF-hand domain containing	protein-coding
16-PTNLD14-TUMOR_peak_7080	chr15	69152457	69152504	+	6.20286	NA	intron (NR_031680, intron 2 of 4)	SVA_D|Other|Other	36177	NR_031680	100313884		NR_031680	miRBase:MI0006414	MIR548H4	MIR548H-4|MIRN548H4|hsa-mir-548h-4	microRNA 548h-4	ncRNA
16-PTNLD14-TUMOR_peak_21655	chr9	5097658	5097706	+	6.12754	NA	intron (NM_004972, intron 22 of 24)	intron (NM_004972, intron 22 of 24)	87936	NM_007179	11172	Hs.632648	NM_007179	HPRD:08401	INSL6	RIF1	insulin-like 6	protein-coding
16-PTNLD14-TUMOR_peak_21614	chr8	145754390	145754561	+	6.05852	NA	promoter-TSS (NM_001001795)	promoter-TSS (NM_001001795)	-17	NM_001001795	414919	Hs.105685	NM_001001795		C8orf82	-	chromosome 8 open reading frame 82	protein-coding
16-PTNLD14-TUMOR_peak_5343	chr12	54882943	54882995	+	6.03609	NA	Intergenic	SVA_D|Other|Other	-8526	NM_005337	3071	Hs.182014	NM_005337	HPRD:00781	NCKAP1L	HEM1	NCK-associated protein 1-like	protein-coding
16-PTNLD14-TUMOR_peak_13395	chr20	62245736	62245783	+	6.03609	NA	intron (NM_012384, intron 2 of 9)	LTR13|LTR|ERVK	12622	NM_012384	26205	Hs.473286	NM_012384	HPRD:16245	GMEB2	P79PIF|PIF79	glucocorticoid modulatory element binding protein 2	protein-coding
16-PTNLD14-TUMOR_peak_22129	chr9	84326884	84326931	+	6.01752	NA	intron (NR_109772, intron 1 of 3)	(A)n|Simple_repeat|Simple_repeat	22279	NR_109772	101927502	Hs.528628	NR_109772	ENSG00000233926	LOC101927502	-	uncharacterized LOC101927502	ncRNA
16-PTNLD14-TUMOR_peak_19433	chr7	30175568	30175617	+	5.98103	NA	intron (NM_152793, intron 1 of 2)	CpG	1040	NM_152793	222166	Hs.200100	NM_152793	HPRD:07635	MTURN	C7orf41|Ells1	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding
16-PTNLD14-TUMOR_peak_15611	chr4	967447	967577	+	5.94689	NA	promoter-TSS (NM_001347)	promoter-TSS (NM_001347)	-164	NM_001347	1609	Hs.584858	NM_001347	HPRD:03127	DGKQ	DAGK|DAGK4|DAGK7	diacylglycerol kinase, theta 110kDa	protein-coding
16-PTNLD14-TUMOR_peak_2266	chr1	235702385	235702433	+	5.94545	NA	Intergenic	Intergenic	-34628	NM_152490	148789	Hs.498143	NM_152490	HPRD:16533	B3GALNT2	B3GalNAc-T2|MDDGA11	beta-1,3-N-acetylgalactosaminyltransferase 2	protein-coding
16-PTNLD14-TUMOR_peak_17444	chr5	108084836	108084891	+	5.89183	NA	intron (NM_005246, intron 1 of 19)	CpG	1340	NM_005246	2241	Hs.221472	NM_005246		FER	FerT|PPP1R74|Pe1Fe10|Pe1Fe13|Pe1Fe3|Pe1Fe6|TYK3	fer (fps/fes related) tyrosine kinase	protein-coding
16-PTNLD14-TUMOR_peak_21600	chr8	145578116	145578171	+	5.80525	NA	TTS (NM_012162)	TTS (NM_012162)	448	NM_001252404	340393	Hs.122231	NM_001252402	ENSG00000214597	TMEM249	C8ORFK29	transmembrane protein 249	protein-coding
16-PTNLD14-TUMOR_peak_19405	chr7	24612789	24613154	+	5.77227	NA	promoter-TSS (NM_016447)	promoter-TSS (NM_016447)	-114	NM_016447	51678	Hs.533355	NM_016447	HPRD:09509	MPP6	PALS2|VAM-1|VAM1|p55T	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding
16-PTNLD14-TUMOR_peak_9855	chr19	7985735	7985918	+	5.64967	NA	promoter-TSS (NR_030717)	promoter-TSS (NR_030717)	-41	NR_030717	6618	Hs.631860	NM_003083	HPRD:05464	SNAPC2	PTFDELTA|SNAP45	small nuclear RNA activating complex, polypeptide 2, 45kDa	protein-coding
16-PTNLD14-TUMOR_peak_24052	chrY	23173259	23173307	+	5.64100	NA	Intergenic	L1PA2|LINE|L1	255329	NM_001039567	140032	Hs.367761	NM_001039567	HPRD:15960	RPS4Y2	RPS4Y2P	ribosomal protein S4, Y-linked 2	protein-coding
16-PTNLD14-TUMOR_peak_236	chr1	17338446	17338581	+	5.55823	NA	promoter-TSS (NM_022089)	promoter-TSS (NM_022089)	-46	NM_001141974	23400	Hs.128866	NM_022089	HPRD:13677	ATP13A2	CLN12|HSA9947|KRPPD|PARK9	ATPase type 13A2	protein-coding
16-PTNLD14-TUMOR_peak_4570	chr11	102323524	102323571	+	5.55823	NA	5' UTR (NM_052932, exon 1 of 5)	5' UTR (NM_052932, exon 1 of 5)	228	NM_052932	114908	Hs.503709	NM_052932	ENSG00000152558	TMEM123	KCT3|PORIMIN|PORMIN	transmembrane protein 123	protein-coding
16-PTNLD14-TUMOR_peak_5378	chr12	56915548	56915602	+	5.55823	NA	promoter-TSS (NM_002898)	promoter-TSS (NM_002898)	-34	NM_002898	5939	Hs.505729	NM_002898		RBMS2	SCR3	RNA binding motif, single stranded interacting protein 2	protein-coding
16-PTNLD14-TUMOR_peak_18085	chr6	4135756	4135916	+	5.54284	NA	promoter-TSS (NM_001166010)	promoter-TSS (NM_001166010)	-5	NM_006117	10455	Hs.15250	NM_006117	HPRD:16269	ECI2	ACBD2|DRS-1|DRS1|HCA88|PECI|dJ1013A10.3	enoyl-CoA delta isomerase 2	protein-coding
16-PTNLD14-TUMOR_peak_9917	chr19	10305319	10305384	+	5.51342	NA	intron (NM_001379, intron 1 of 39)	CpG	404	NM_001379	1786	Hs.202672	NM_001379	HPRD:00532	DNMT1	ADCADN|AIM|CXXC9|DNMT|HSN1E|MCMT	DNA (cytosine-5-)-methyltransferase 1	protein-coding
16-PTNLD14-TUMOR_peak_18839	chr6	89773283	89773331	+	5.47852	NA	Intergenic	U2|snRNA|snRNA	-17122	NM_006813	10957	Hs.75969	NM_006813	HPRD:08412	PNRC1	B4-2|PNAS-145|PROL2|PRR2	proline-rich nuclear receptor coactivator 1	protein-coding
16-PTNLD14-TUMOR_peak_12954	chr20	25371143	25371224	+	5.43323	NA	exon (NM_015600, exon 1 of 13)	exon (NM_015600, exon 1 of 13)	435	NM_015600	26090	Hs.441550	NM_015600	HPRD:07094	ABHD12	ABHD12A|BEM46L2|C20orf22|PHARC|dJ965G21.2	abhydrolase domain containing 12	protein-coding
16-PTNLD14-TUMOR_peak_9242	chr17	79869125	79869264	+	5.41833	NA	promoter-TSS (NM_001282203)	promoter-TSS (NM_001282203)	-79	NM_001282204	5833	Hs.569843	NM_002861		PCYT2	ET	phosphate cytidylyltransferase 2, ethanolamine	protein-coding
16-PTNLD14-TUMOR_peak_4670	chr11	118307019	118307082	+	5.36153	NA	promoter-TSS (NM_005933)	promoter-TSS (NM_005933)	-155	NM_001197104	4297	Hs.258855	NM_005933	HPRD:01162	KMT2A	ALL-1|CXXC7|HRX|HTRX1|MLL|MLL/GAS7|MLL1|MLL1A|TET1-MLL|TRX1|WDSTS	lysine (K)-specific methyltransferase 2A	protein-coding
16-PTNLD14-TUMOR_peak_18765	chr6	76458914	76458962	+	5.28598	NA	promoter-TSS (NM_004999)	promoter-TSS (NM_004999)	29	NM_004999	4646	Hs.149387	NM_004999	HPRD:02985	MYO6	DFNA22|DFNB37	myosin VI	protein-coding
16-PTNLD14-TUMOR_peak_219	chr1	16693916	16694036	+	5.21198	NA	intron (NR_073500, intron 1 of 1)	CpG	451	NR_073500	26099	Hs.252967	NM_001114600	HPRD:13213	SZRD1	C1orf144	SUZ RNA binding domain containing 1	protein-coding
16-PTNLD14-TUMOR_peak_13427	chr21	9699582	9699658	+	5.20869	NA	Intergenic	ACRO1|Satellite|acro	-126212	NR_037421	100500862		NR_037421		MIR3648-1	MIR3648	microRNA 3648-1	ncRNA
16-PTNLD14-TUMOR_peak_4201	chr11	64570704	64570844	+	5.17160	NA	promoter-TSS (NM_004579)	promoter-TSS (NM_004579)	-61	NM_004579	5871	Hs.534341	NM_004579	HPRD:04408	MAP4K2	BL44|GCK|RAB8IP	mitogen-activated protein kinase kinase kinase kinase 2	protein-coding
16-PTNLD14-TUMOR_peak_2399	chr10	1281430	1281567	+	5.14294	NA	intron (NM_018702, intron 5 of 9)	intron (NM_018702, intron 5 of 9)	75790	NR_015376	399706	Hs.721191	NM_001010910	HPRD:17990	LINC00200	C10orf139|NCRNA00200	long intergenic non-protein coding RNA 200	ncRNA
16-PTNLD14-TUMOR_peak_10861	chr19	53496866	53497012	+	5.12466	NA	promoter-TSS (NR_003578)	promoter-TSS (NR_003578)	-155	NR_003578	79986	Hs.714428	NM_024924	HPRD:07806	ZNF702P	ZNF702	zinc finger protein 702, pseudogene	pseudo
16-PTNLD14-TUMOR_peak_8790	chr17	42705840	42705960	+	5.10648	NA	Intergenic	Intergenic	21817	NR_110661	101927017	Hs.560554	NR_110661	ENSG00000266979	LINC01180	-	long intergenic non-protein coding RNA 1180	ncRNA
16-PTNLD14-TUMOR_peak_4467	chr11	79204718	79204765	+	5.10648	NA	Intergenic	Intergenic	-53046	NM_001098816	26011	Hs.213087	NM_001098816	ENSG00000149256	TENM4	Doc4|ODZ4|TNM4|Ten-M4	teneurin transmembrane protein 4	protein-coding
16-PTNLD14-TUMOR_peak_7142	chr15	78858056	78858168	+	5.10648	NA	exon (NM_000745, exon 1 of 6)	exon (NM_000745, exon 1 of 6)	250	NM_000745	1138	Hs.1614	NM_000745	HPRD:00334	CHRNA5	LNCR2	cholinergic receptor, nicotinic, alpha 5 (neuronal)	protein-coding
16-PTNLD14-TUMOR_peak_15868	chr4	48271939	48271986	+	5.10648	NA	promoter-TSS (NM_003215)	promoter-TSS (NM_003215)	-148	NM_003215	7006	Hs.479670	NM_003215	HPRD:02786	TEC	PSCTK4	tec protein tyrosine kinase	protein-coding
16-PTNLD14-TUMOR_peak_7052	chr15	63334372	63334466	+	5.10648	NA	promoter-TSS (NM_000366)	promoter-TSS (NM_000366)	-419	NM_001018006	7168	Hs.133892	NM_000366	HPRD:01839	TPM1	C15orf13|CMD1Y|CMH3|HTM-alpha|LVNC9|TMSA	tropomyosin 1 (alpha)	protein-coding
16-PTNLD14-TUMOR_peak_2400	chr10	1281661	1281708	+	5.10608	NA	intron (NM_018702, intron 5 of 9)	intron (NM_018702, intron 5 of 9)	75976	NR_015376	399706	Hs.721191	NM_001010910	HPRD:17990	LINC00200	C10orf139|NCRNA00200	long intergenic non-protein coding RNA 200	ncRNA
16-PTNLD14-TUMOR_peak_8711	chr17	37026216	37026386	+	5.05643	NA	non-coding (NR_073384, exon 1 of 8)	non-coding (NR_073384, exon 1 of 8)	189	NM_006148	3927	Hs.741156	NM_006148	HPRD:04229	LASP1	Lasp-1|MLN50	LIM and SH3 protein 1	protein-coding
16-PTNLD14-TUMOR_peak_8098	chr16	69796251	69796298	+	5.05391	NA	promoter-TSS (NM_007014)	promoter-TSS (NM_007014)	87	NM_007014	11060	Hs.408458	NM_007014	HPRD:03812	WWP2	AIP2|WWp2-like	WW domain containing E3 ubiquitin protein ligase 2	protein-coding
16-PTNLD14-TUMOR_peak_21870	chr9	38242810	38242868	+	5.03120	NA	Intergenic	SVA_F|Other|Other	-149822	NM_000692	219	Hs.436219	NM_000692	HPRD:00005	ALDH1B1	ALDH5|ALDHX	aldehyde dehydrogenase 1 family, member B1	protein-coding
16-PTNLD14-TUMOR_peak_19281	chr7	4304103	4304197	+	4.97774	NA	intron (NM_152744, intron 44 of 44)	CpG	134833	NM_001079653	221935	Hs.653013	NM_152744	HPRD:07388	SDK1	-	sidekick cell adhesion molecule 1	protein-coding
16-PTNLD14-TUMOR_peak_11149	chr2	10442944	10443062	+	4.97774	NA	promoter-TSS (NM_002149)	promoter-TSS (NM_002149)	-27	NM_002149	3241	Hs.580427	NM_002149	HPRD:02564	HPCAL1	BDR1|HLP2|VILIP-3	hippocalcin-like 1	protein-coding
16-PTNLD14-TUMOR_peak_5979	chr13	41528844	41528989	+	4.97774	NA	intron (NM_001145353, intron 2 of 7)	SVA_D|Other|Other	27502	NM_001145353	1997	Hs.135646	NM_172373	HPRD:01808	ELF1	-	E74-like factor 1 (ets domain transcription factor)	protein-coding
16-PTNLD14-TUMOR_peak_9189	chr17	76480848	76480931	+	4.94533	NA	promoter-TSS (NR_102401)	promoter-TSS (NR_102401)	-103	NR_102401	100996295	Hs.615304	NR_102401		DNAH17-AS1	-	DNAH17 antisense RNA 1	ncRNA
16-PTNLD14-TUMOR_peak_16483	chr4	146654418	146654526	+	4.92595	NA	TTS (NM_001080531)	TTS (NM_001080531)	53116	NM_001080531	646603	Hs.452865	NM_001080531	ENSG00000237136	C4orf51	-	chromosome 4 open reading frame 51	protein-coding
16-PTNLD14-TUMOR_peak_2176	chr1	226867840	226867961	+	4.92595	NA	intron (NM_002221, intron 2 of 7)	intron (NM_002221, intron 2 of 7)	-5131	NR_103784	100506443	Hs.664293	NR_103784		ITPKB-IT1	-	ITPKB intronic transcript 1 (non-protein coding)	ncRNA
16-PTNLD14-TUMOR_peak_3093	chr10	72972216	72972415	+	4.92395	NA	promoter-TSS (NM_170744)	promoter-TSS (NM_170744)	23	NM_170744	219699	Hs.522997	NM_170744	HPRD:08487	UNC5B	UNC5H2|p53RDL1	unc-5 homolog B (C. elegans)	protein-coding
16-PTNLD14-TUMOR_peak_21838	chr9	35490060	35490125	+	4.91388	NA	non-coding (NR_052015, exon 1 of 12)	non-coding (NR_052015, exon 1 of 12)	143	NR_052015	9853	Hs.493796	NM_014806	HPRD:18009	RUSC2	Iporin	RUN and SH3 domain containing 2	protein-coding
16-PTNLD14-TUMOR_peak_23219	chrX	55877806	55877853	+	4.88193	NA	Intergenic	L1PA3|LINE|L1	133719	NM_006064	10325	Hs.50282	NM_006064	HPRD:06710	RRAGB	RAGB|bA465E19.1	Ras-related GTP binding B	protein-coding
16-PTNLD14-TUMOR_peak_2801	chr10	42384484	42384566	+	4.86408	NA	Intergenic	HSATII|Satellite|Satellite	478968	NR_024380	441666	Hs.255729	NR_024380	ENSG00000215146	LOC441666	-	zinc finger protein 91 pseudogene	pseudo
16-PTNLD14-TUMOR_peak_8562	chr17	19140239	19140378	+	4.85091	NA	promoter-TSS (NM_001102664)	promoter-TSS (NM_001102664)	-382	NM_014964	22905	Hs.743983	NM_014964	HPRD:06271	EPN2	EHB21	epsin 2	protein-coding
16-PTNLD14-TUMOR_peak_11626	chr2	85645765	85645812	+	4.81731	NA	Intergenic	CpG	-4591	NM_001256139	822	Hs.516155	NM_001747	HPRD:01088	CAPG	AFCP|HEL-S-66|MCP	capping protein (actin filament), gelsolin-like	protein-coding
16-PTNLD14-TUMOR_peak_15964	chr4	49515200	49515285	+	4.81142	NA	Intergenic	Intergenic	526583	NM_001286791	80157	Hs.479703	NM_025087	HPRD:08638	CWH43	CWH43-C	cell wall biogenesis 43 C-terminal homolog (S. cerevisiae)	protein-coding
16-PTNLD14-TUMOR_peak_16574	chr4	160860466	160860598	+	4.80088	NA	Intergenic	Intergenic	671534	NM_014247	9693	Hs.744884	NM_014247	ENSG00000109756	RAPGEF2	CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|Rap-GEP|nRap GEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding
16-PTNLD14-TUMOR_peak_3195	chr10	94449659	94449737	+	4.76055	NA	promoter-TSS (NM_002729)	promoter-TSS (NM_002729)	17	NM_002729	3087	Hs.118651	NM_002729		HHEX	HEX|HMPH|HOX11L-PEN|PRH|PRHX	hematopoietically expressed homeobox	protein-coding
16-PTNLD14-TUMOR_peak_15444	chr3	186501007	186501083	+	4.76000	NA	promoter-TSS (NM_001967)	promoter-TSS (NM_001967)	-316	NM_001967	1974	Hs.518475	NM_001967	HPRD:03062	EIF4A2	BM-010|DDX2B|EIF4A|EIF4F|eIF-4A-II|eIF4A-II	eukaryotic translation initiation factor 4A2	protein-coding
16-PTNLD14-TUMOR_peak_8992	chr17	59489899	59489974	+	4.75473	NA	exon (NM_203425, exon 1 of 1)	exon (NM_203425, exon 1 of 1)	824	NM_203425	388407	Hs.434459	NM_203425	HPRD:14202	C17orf82	-	chromosome 17 open reading frame 82	protein-coding
16-PTNLD14-TUMOR_peak_4557	chr11	100156950	100157080	+	4.69831	NA	intron (NM_014361, intron 18 of 24)	L1PA2|LINE|L1	-401392	NM_152432	143872	Hs.741465	NM_152432	ENSG00000165895	ARHGAP42	GRAF3	Rho GTPase activating protein 42	protein-coding
16-PTNLD14-TUMOR_peak_22425	chr9	124498885	124498933	+	4.68175	NA	intron (NM_032552, intron 3 of 16)	CpG	-6155	NM_138709	153090	Hs.522378	NM_032552	HPRD:09903	DAB2IP	AF9Q34|AIP-1|AIP1|DIP1/2	DAB2 interacting protein	protein-coding
16-PTNLD14-TUMOR_peak_19520	chr7	45960828	45960903	+	4.65766	NA	promoter-TSS (NM_000598)	promoter-TSS (NM_000598)	6	NM_000598	3486	Hs.450230	NM_000598	HPRD:00899	IGFBP3	BP-53|IBP3	insulin-like growth factor binding protein 3	protein-coding
16-PTNLD14-TUMOR_peak_13019	chr20	30764748	30764838	+	4.62041	NA	Intergenic	SVA_F|Other|Other	13370	NR_002781	128854	Hs.647447	NR_002781	HPRD:18235	TSPY26P	TSPYL3|bA392M18.1	testis specific protein, Y-linked 26, pseudogene	pseudo
16-PTNLD14-TUMOR_peak_3409	chr10	126849728	126849837	+	4.60977	NA	promoter-TSS (NM_001083914)	promoter-TSS (NM_001083914)	-158	NM_001083914	1488	Hs.501345	NM_001329	HPRD:04016	CTBP2	-	C-terminal binding protein 2	protein-coding
16-PTNLD14-TUMOR_peak_1888	chr1	183832260	183832307	+	4.60604	NA	intron (NM_001297671, intron 3 of 17)	L2a|LINE|L2	58068	NM_001297672	23179	Hs.497148	NM_015149	HPRD:12032	RGL1	RGL	ral guanine nucleotide dissociation stimulator-like 1	protein-coding
16-PTNLD14-TUMOR_peak_17098	chr5	53606817	53606893	+	4.60242	NA	promoter-TSS (NM_019087)	promoter-TSS (NM_019087)	-452	NM_019087	54622	Hs.659125	NM_019087	HPRD:12471	ARL15	ARFRP2	ADP-ribosylation factor-like 15	protein-coding
16-PTNLD14-TUMOR_peak_3131	chr10	76995817	76995882	+	4.58736	NA	promoter-TSS (NM_144589)	promoter-TSS (NM_144589)	-79	NM_144589	118881	Hs.355333	NM_144589	HPRD:08678	COMTD1	-	catechol-O-methyltransferase domain containing 1	protein-coding
16-PTNLD14-TUMOR_peak_10227	chr19	19738980	19739190	+	4.58011	NA	promoter-TSS (NM_004720)	promoter-TSS (NM_004720)	-46	NM_004720	9170	Hs.122575	NM_004720	ENSG00000064547	LPAR2	EDG-4|EDG4|LPA-2|LPA2	lysophosphatidic acid receptor 2	protein-coding
16-PTNLD14-TUMOR_peak_8593	chr17	22029970	22030017	+	4.56376	NA	Intergenic	Intergenic	7556	NM_001190452	100462977	Hs.740185	NM_001190452	ENSG00000256618	MTRNR2L1	HN1	MT-RNR2-like 1	protein-coding
16-PTNLD14-TUMOR_peak_14325	chr3	23852108	23852269	+	4.52510	NA	intron (NM_001202476, intron 1 of 4)	CpG	254	NM_001202476	7324	Hs.164853	NM_003341	HPRD:04225	UBE2E1	UBCH6	ubiquitin-conjugating enzyme E2E 1	protein-coding
16-PTNLD14-TUMOR_peak_4446	chr11	77185025	77185181	+	4.52510	NA	promoter-TSS (NM_001128620)	promoter-TSS (NM_001128620)	5	NM_002576	5058	Hs.435714	NM_002576	HPRD:03995	PAK1	PAKalpha	p21 protein (Cdc42/Rac)-activated kinase 1	protein-coding
16-PTNLD14-TUMOR_peak_15736	chr4	8966285	8966338	+	4.50589	NA	Intergenic	CpG	14834	NM_001040071	650293	Hs.535167	NM_001040071		LOC650293	-	seven transmembrane helix receptor	protein-coding
16-PTNLD14-TUMOR_peak_19422	chr7	26438266	26438322	+	4.49562	NA	Intergenic	CpG	-4814	NR_015364	441204	Hs.587432	NR_015364		LOC441204	-	uncharacterized LOC441204	ncRNA
16-PTNLD14-TUMOR_peak_19039	chr6	148644991	148645038	+	4.46851	NA	Intergenic	AluSc|SINE|Alu	-18715	NM_015278	23328	Hs.193133	NM_015278	HPRD:06408	SASH1	SH3D6A|dJ323M4|dJ323M4.1	SAM and SH3 domain containing 1	protein-coding
16-PTNLD14-TUMOR_peak_6354	chr14	33409068	33409136	+	4.45900	NA	intron (NM_001165893, intron 1 of 10)	intron (NM_001165893, intron 1 of 10)	643	NM_173159	64067	Hs.657892	NM_022123	HPRD:11400	NPAS3	MOP6|PASD6|bHLHe12	neuronal PAS domain protein 3	protein-coding
16-PTNLD14-TUMOR_peak_8964	chr17	56833124	56833171	+	4.42325	NA	promoter-TSS (NR_048561)	promoter-TSS (NR_048561)	-83	NM_014906	22843	Hs.245044	NM_014906		PPM1E	CaMKP-N|POPX1|PP2CH|caMKN	protein phosphatase, Mg2+/Mn2+ dependent, 1E	protein-coding
16-PTNLD14-TUMOR_peak_6565	chr14	65705439	65705486	+	4.42325	NA	Intergenic	AluJb|SINE|Alu	-16397	NR_103769	100128233	Hs.497323	NR_103769	ENSG00000255002	LOC100128233	-	uncharacterized LOC100128233	ncRNA
16-PTNLD14-TUMOR_peak_10200	chr19	18699787	18699938	+	4.39449	NA	exon (NM_001100419, exon 2 of 5)	exon (NM_001100419, exon 2 of 5)	367	NM_001100418	55049	Hs.655317	NM_017967	HPRD:07948	C19orf60	-	chromosome 19 open reading frame 60	protein-coding
16-PTNLD14-TUMOR_peak_1810	chr1	178694339	178694388	+	4.35939	NA	promoter-TSS (NM_152663)	promoter-TSS (NM_152663)	81	NM_152663	55103	Hs.632485	NM_018037	HPRD:15206	RALGPS2	dJ595C2.1	Ral GEF with PH domain and SH3 binding motif 2	protein-coding
16-PTNLD14-TUMOR_peak_1468	chr1	150947287	150947408	+	4.34115	NA	5' UTR (NM_181746, exon 1 of 11)	5' UTR (NM_181746, exon 1 of 11)	132	NM_022075	29956	Hs.744017	NM_013384	HPRD:06080	CERS2	L3|LASS2|SP260|TMSG1	ceramide synthase 2	protein-coding
16-PTNLD14-TUMOR_peak_15269	chr3	160473570	160473658	+	4.30026	NA	promoter-TSS (NM_139245)	promoter-TSS (NM_139245)	-382	NM_139245	151742	Hs.389027	NM_139245		PPM1L	PP2C-epsilon|PP2CE|PPM1-LIKE	protein phosphatase, Mg2+/Mn2+ dependent, 1L	protein-coding
16-PTNLD14-TUMOR_peak_6303	chr14	24476185	24476275	+	4.28497	NA	promoter-TSS (NR_102688)	promoter-TSS (NR_102688)	12	NR_102688	728635	Hs.647569	NM_001082488		DHRS4L1	SDR25C4	dehydrogenase/reductase (SDR family) member 4 like 1	protein-coding
16-PTNLD14-TUMOR_peak_9372	chr18	9614136	9614183	+	4.25471	NA	promoter-TSS (NR_110773)	promoter-TSS (NR_110773)	446	NM_005134	9989	Hs.743236	NM_005134	ENSG00000154845	PPP4R1	MEG1|PP4(Rmeg)|PP4R1	protein phosphatase 4, regulatory subunit 1	protein-coding
16-PTNLD14-TUMOR_peak_5680	chr12	110719263	110719396	+	4.23677	NA	5' UTR (NM_001681, exon 1 of 21)	5' UTR (NM_001681, exon 1 of 21)	297	NM_170665	488	Hs.506759	NM_001681	HPRD:00161	ATP2A2	ATP2B|DAR|DD|SERCA2	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding
16-PTNLD14-TUMOR_peak_18322	chr6	28109531	28109583	+	4.21857	NA	promoter-TSS (NM_001278122)	promoter-TSS (NM_001278122)	-131	NM_001278122	7745	Hs.57679	NM_006298	HPRD:03760	ZKSCAN8	LD5-1|ZNF192|ZSCAN40	zinc finger with KRAB and SCAN domains 8	protein-coding
16-PTNLD14-TUMOR_peak_15617	chr4	1242994	1243041	+	4.21796	NA	promoter-TSS (NM_001012614)	promoter-TSS (NM_001012614)	-109	NM_001328	1487	Hs.208597	NM_001328	HPRD:04015	CTBP1	BARS	C-terminal binding protein 1	protein-coding
16-PTNLD14-TUMOR_peak_2355	chr1	245082028	245082134	+	4.20393	NA	Intergenic	(CAGG)n|Simple_repeat|Simple_repeat	-51090	NM_032328	84288	Hs.134857	NM_032328	HPRD:14423	EFCAB2	CFAP200|DRC8	EF-hand calcium binding domain 2	protein-coding
16-PTNLD14-TUMOR_peak_5241	chr12	48744528	48744661	+	4.18564	NA	promoter-TSS (NM_001172681)	promoter-TSS (NM_001172681)	80	NM_001172681	121274	Hs.23492	NM_152320	HPRD:08711	ZNF641	-	zinc finger protein 641	protein-coding
16-PTNLD14-TUMOR_peak_9754	chr19	1864213	1864260	+	4.17561	NA	promoter-TSS (NM_031918)	promoter-TSS (NM_031918)	-672	NM_031918	83855	Hs.136280	NM_031918	HPRD:12090	KLF16	BTEB4|DRRF|NSLP2	Kruppel-like factor 16	protein-coding
16-PTNLD14-TUMOR_peak_9698	chr18	77905749	77905919	+	4.12832	NA	promoter-TSS (NR_028340)	promoter-TSS (NR_028340)	27	NR_028340	100130522	Hs.352602	NM_001145731	ENSG00000267270	PARD6G-AS1	-	PARD6G antisense RNA 1	ncRNA
16-PTNLD14-TUMOR_peak_830	chr1	65532506	65532602	+	4.12159	NA	Intergenic	CpG	-8363	NR_029516	406893		NR_029516	miRBase:MI0000103	MIR101-1	MIRN101-1	microRNA 101-1	ncRNA
16-PTNLD14-TUMOR_peak_16760	chr5	1828190	1828239	+	4.08990	NA	Intergenic	G-rich|Low_complexity|Low_complexity	26718	NM_004553	4726	Hs.408257	NM_004553		NDUFS6	CI-13kA|CI-13kD-A|CI13KDA	NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa (NADH-coenzyme Q reductase)	protein-coding
16-PTNLD14-TUMOR_peak_13982	chr22	26825056	26825103	+	4.08990	NA	promoter-TSS (NM_020437)	promoter-TSS (NM_020437)	-201	NM_020437	57168	Hs.567547	NM_020437	HPRD:14255	ASPHD2	-	aspartate beta-hydroxylase domain containing 2	protein-coding
16-PTNLD14-TUMOR_peak_21696	chr9	14314729	14314777	+	4.03406	NA	promoter-TSS (NM_001190737)	promoter-TSS (NM_001190737)	-708	NM_001190737	4781	Hs.644095	NM_005596	HPRD:09008	NFIB	CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3	nuclear factor I/B	protein-coding
16-PTNLD14-TUMOR_peak_19528	chr7	48128637	48128851	+	4.03020	NA	promoter-TSS (NM_001287430)	promoter-TSS (NM_001287430)	7	NM_001287429	7378	Hs.488240	NM_003364	HPRD:08932	UPP1	UDRPASE|UP|UPASE|UPP	uridine phosphorylase 1	protein-coding
16-PTNLD14-TUMOR_peak_7049	chr15	60690290	60690337	+	4.03020	NA	promoter-TSS (NM_001136015)	promoter-TSS (NM_001136015)	-128	NM_004039	302	Hs.511605	NM_004039	HPRD:01061	ANXA2	ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV	annexin A2	protein-coding
16-PTNLD14-TUMOR_peak_21537	chr8	142502382	142502465	+	3.99786	NA	intron (NR_102363, intron 3 of 27)	intron (NR_102363, intron 3 of 27)	14907	NM_207414	389690	Hs.689547	NM_207414	HPRD:13480	MROH5	-	maestro heat-like repeat family member 5	protein-coding
16-PTNLD14-TUMOR_peak_7904	chr16	46455847	46455905	+	3.95767	NA	Intergenic	HSATII|Satellite|Satellite	147133	NR_026556	124149	Hs.97414	NM_001004299		ANKRD26P1	-	ankyrin repeat domain 26 pseudogene 1	pseudo
16-PTNLD14-TUMOR_peak_100	chr1	6320130	6320247	+	3.93674	NA	intron (NM_207370, intron 1 of 5)	CpG	847	NM_207370	387509	Hs.531581	NM_207370	HPRD:13600	GPR153	PGR1	G protein-coupled receptor 153	protein-coding
16-PTNLD14-TUMOR_peak_23690	chrX	135579549	135579666	+	3.92831	NA	promoter-TSS (NM_014500)	promoter-TSS (NM_014500)	-64	NM_014500	27336	Hs.204475	NM_014500	HPRD:02282	HTATSF1	TAT-SF1|TATSF1|dJ196E23.2	HIV-1 Tat specific factor 1	protein-coding
16-PTNLD14-TUMOR_peak_21366	chr8	124868344	124868440	+	3.92831	NA	intron (NM_001039112, intron 1 of 40)	intron (NM_001039112, intron 1 of 40)	4165	NM_001039112	654463	Hs.632058	NM_001039112	ENSG00000214814	FER1L6	C8ORFK23	fer-1-like family member 6	protein-coding
16-PTNLD14-TUMOR_peak_2656	chr10	32217835	32218049	+	3.92831	NA	promoter-TSS (NM_001270697)	promoter-TSS (NM_001270697)	-138	NM_001270698	94134	Hs.499264	NM_018287	HPRD:06446	ARHGAP12	-	Rho GTPase activating protein 12	protein-coding
16-PTNLD14-TUMOR_peak_9833	chr19	6476294	6476349	+	3.92831	NA	intron (NM_024898, intron 10 of 22)	intron (NM_024898, intron 10 of 22)	5498	NM_024898	79958	Hs.236449	NM_024898	HPRD:13304	DENND1C	FAM31C	DENN/MADD domain containing 1C	protein-coding
16-PTNLD14-TUMOR_peak_6945	chr15	41056150	41056238	+	3.92831	NA	promoter-TSS (NM_005258)	promoter-TSS (NM_005258)	-91	NM_005258	2644	Hs.631717	NM_005258	HPRD:03895	GCHFR	GFRP|HsT16933|P35	GTP cyclohydrolase I feedback regulator	protein-coding
16-PTNLD14-TUMOR_peak_17445	chr5	108085008	108085055	+	3.91987	NA	intron (NM_005246, intron 1 of 19)	CpG	1508	NM_005246	2241	Hs.221472	NM_005246		FER	FerT|PPP1R74|Pe1Fe10|Pe1Fe13|Pe1Fe3|Pe1Fe6|TYK3	fer (fps/fes related) tyrosine kinase	protein-coding
16-PTNLD14-TUMOR_peak_2207	chr1	228966119	228966298	+	3.87008	NA	Intergenic	Intergenic	95384	NM_021205	58480	Hs.647774	NM_021205	HPRD:06965	RHOU	ARHU|CDC42L1|G28K|WRCH1|hG28K	ras homolog family member U	protein-coding
16-PTNLD14-TUMOR_peak_227	chr1	17034283	17034333	+	3.84865	NA	intron (NR_026567, intron 2 of 10)	CpG-520	12344	NR_026567	284729	Hs.548239	NR_026567	ENSG00000268869	ESPNP	dJ1182A14.1	espin pseudogene	pseudo
16-PTNLD14-TUMOR_peak_564	chr1	40367459	40367512	+	3.82535	NA	exon (NM_005376, exon 1 of 2)	exon (NM_005376, exon 1 of 2)	202	NM_005376	4610	Hs.437922	NM_005376	HPRD:01279	MYCL	LMYC|MYCL1|bHLHe38	v-myc avian myelocytomatosis viral oncogene lung carcinoma derived homolog	protein-coding
16-PTNLD14-TUMOR_peak_11167	chr2	13878767	13878892	+	3.81458	NA	Intergenic	L1PA3|LINE|L1	662253	NR_103814	100499171	Hs.565606	NR_103814	ENSG00000230448	LINC00276	NCRNA00276	long intergenic non-protein coding RNA 276	ncRNA
16-PTNLD14-TUMOR_peak_6234	chr14	20057671	20057752	+	3.81447	NA	Intergenic	Intergenic	-37439	NM_001145442	641455	Hs.654289	NM_001145442	ENSG00000187537	POTEM	ACT|P704P|POTE14beta	POTE ankyrin domain family, member M	protein-coding
16-PTNLD14-TUMOR_peak_13093	chr20	35169766	35169901	+	3.79690	NA	promoter-TSS (NM_181526)	promoter-TSS (NM_181526)	-54	NM_006097	10398	Hs.504687	NM_006097	HPRD:17619	MYL9	LC20|MLC-2C|MLC2|MRLC1|MYRL2	myosin, light chain 9, regulatory	protein-coding
16-PTNLD14-TUMOR_peak_17888	chr5	167914098	167914161	+	3.75159	NA	intron (NM_002887, intron 1 of 14)	AluY|SINE|Alu	666	NM_002887	5917	Hs.654907	NM_002887	HPRD:00142	RARS	ArgRS|DALRD1	arginyl-tRNA synthetase	protein-coding
16-PTNLD14-TUMOR_peak_13118	chr20	37274978	37275025	+	3.73238	NA	intron (NM_001164431, intron 12 of 14)	CpG	44424	NM_001164431	343578	Hs.451997	NM_001164431	ENSG00000124143	ARHGAP40	C20orf95|dJ1100H13.4	Rho GTPase activating protein 40	protein-coding
16-PTNLD14-TUMOR_peak_19735	chr7	65051586	65051701	+	3.65550	NA	intron (NR_038378, intron 8 of 9)	MER54A|LTR|ERVL	-61124	NR_027392	644619	Hs.676517	NR_027392	ENSG00000232270	INTS4L2	-	integrator complex subunit 4-like 2	pseudo
16-PTNLD14-TUMOR_peak_8035	chr16	67217870	67217917	+	3.65116	NA	promoter-TSS (NM_001040715)	promoter-TSS (NM_001040715)	-10	NM_001040715	653319	Hs.651201	NM_001040715	ENSG00000196123	KIAA0895L	-	KIAA0895-like	protein-coding
16-PTNLD14-TUMOR_peak_13196	chr20	44462682	44462821	+	3.63298	NA	intron (NM_001042632, intron 1 of 3)	CpG	281	NM_033421	90203	Hs.472854	NM_033421		SNX21	C20orf161|PP3993|SNX-L|dJ337O18.4	sorting nexin family member 21	protein-coding
16-PTNLD14-TUMOR_peak_21147	chr8	86726576	86726623	+	3.62300	NA	promoter-TSS (NR_003594).3	promoter-TSS (NR_003594).3	-474	NR_003594	100288527	Hs.535056	NR_003594		REXO1L2P	-	REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene)	pseudo
16-PTNLD14-TUMOR_peak_3281	chr10	104518700	104518747	+	3.60589	NA	intron (NM_001083913, intron 1 of 3)	LTR13A|LTR|ERVK	14996	NM_001083913	54838	Hs.500897	NM_017787	HPRD:12567	WBP1L	C10orf26|OPA1L|OPAL1	WW domain binding protein 1-like	protein-coding
16-PTNLD14-TUMOR_peak_8309	chr16	89989828	89989944	+	3.60390	NA	intron (NM_006086, intron 1 of 3)	GC_rich|Low_complexity|Low_complexity	199	NM_006086	10381	Hs.511743	NM_006086	HPRD:04044	TUBB3	CDCBM|CDCBM1|CFEOM3|CFEOM3A|FEOM3|TUBB4|beta-4	tubulin, beta 3 class III	protein-coding
16-PTNLD14-TUMOR_peak_2020	chr1	203597742	203597821	+	3.58397	NA	intron (NM_001684, intron 1 of 20)	intron (NM_001684, intron 1 of 20)	1866	NM_001684	493	Hs.343522	NM_001684	HPRD:00159	ATP2B4	ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x	ATPase, Ca++ transporting, plasma membrane 4	protein-coding
16-PTNLD14-TUMOR_peak_6827	chr15	21313229	21313495	+	3.53263	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	167595	NR_040094	348120	Hs.116287	NR_040094	ENSG00000258710	LINC01193	CT60	long intergenic non-protein coding RNA 1193	ncRNA
16-PTNLD14-TUMOR_peak_1156	chr1	115334074	115334121	+	3.47716	NA	Intergenic	SVA_D|Other|Other	-10789	NM_001102396	80143	Hs.709277	NM_025073	HPRD:07958	SIKE1	SIKE	suppressor of IKBKE 1	protein-coding
16-PTNLD14-TUMOR_peak_7069	chr15	66998772	66998910	+	3.46823	NA	intron (NR_027654, intron 1 of 4)	intron (NR_027654, intron 1 of 4)	-2089	NM_001142861	4091	Hs.153863	NM_005585	HPRD:04240	SMAD6	AOVD2|HsT17432|MADH6|MADH7	SMAD family member 6	protein-coding
16-PTNLD14-TUMOR_peak_3133	chr10	77162043	77162243	+	3.46709	NA	promoter-TSS (NR_110301)	promoter-TSS (NR_110301)	-491	NR_120651	84858	Hs.195710	NM_032772	HPRD:15811	ZNF503	NOLZ-1|NOLZ1	zinc finger protein 503	protein-coding
16-PTNLD14-TUMOR_peak_9180	chr17	75954164	75954264	+	3.44578	NA	Intergenic	CpG	-46104	NM_018996	57690	Hs.569831	NM_018996	HPRD:10026	TNRC6C	-	trinucleotide repeat containing 6C	protein-coding
16-PTNLD14-TUMOR_peak_15678	chr4	4144492	4144583	+	3.44578	NA	Intergenic	Intergenic	84084	NM_177998	133060	Hs.534544	NM_177998	HPRD:07421	OTOP1	-	otopetrin 1	protein-coding
16-PTNLD14-TUMOR_peak_7668	chr16	28834242	28834377	+	3.44484	NA	promoter-TSS (NM_017492)	promoter-TSS (NM_017492)	-60	NM_148416	11273	Hs.460499	NM_007245	HPRD:06394	ATXN2L	A2D|A2LG|A2LP|A2RP	ataxin 2-like	protein-coding
16-PTNLD14-TUMOR_peak_2070	chr1	208136957	208137146	+	3.38622	NA	Intergenic	CpG	-52368	NM_001773	947	Hs.374990	NM_001773	HPRD:00790	CD34	-	CD34 molecule	protein-coding
16-PTNLD14-TUMOR_peak_675	chr1	46050373	46050424	+	3.27369	NA	intron (NM_001195193, intron 1 of 12)	CpG	738	NM_002482	4678	Hs.319334	NM_002482	HPRD:04423	NASP	FLB7527|PRO1999	nuclear autoantigenic sperm protein (histone-binding)	protein-coding
16-PTNLD14-TUMOR_peak_11585	chr2	75061203	75061250	+	3.20218	NA	5' UTR (NM_000189, exon 1 of 18)	5' UTR (NM_000189, exon 1 of 18)	1444	NM_000189	3099	Hs.406266	NM_000189	HPRD:03080	HK2	HKII|HXK2	hexokinase 2	protein-coding
16-PTNLD14-TUMOR_peak_17980	chr5	177098969	177099016	+	3.13859	NA	intron (NR_026921, intron 1 of 5)	CpG	286	NR_026921	202181	Hs.189914	NR_026921		LOC202181	-	SUMO-interacting motifs containing 1 pseudogene	pseudo
16-PTNLD14-TUMOR_peak_10671	chr19	47617017	47617140	+	3.13003	NA	promoter-TSS (NM_015168)	promoter-TSS (NM_015168)	-69	NM_015168	23211	Hs.104661	NM_015168	ENSG00000130749	ZC3H4	C19orf7	zinc finger CCCH-type containing 4	protein-coding
16-PTNLD14-TUMOR_peak_6782	chr14	105487678	105487725	+	3.05003	NA	promoter-TSS (NM_145701)	promoter-TSS (NM_145701)	-276	NM_017955	55038	Hs.34045	NM_017955	HPRD:13015	CDCA4	HEPP|SEI-3/HEPP	cell division cycle associated 4	protein-coding
16-PTNLD14-TUMOR_peak_20341	chr7	141233270	141233317	+	2.95782	NA	Intergenic	Intergenic	-17785	NM_018238	55750	Hs.743318	NM_018238		AGK	CATC5|CTRCT38|MTDPS10|MULK	acylglycerol kinase	protein-coding
16-PTNLD14-TUMOR_peak_11245	chr2	27665189	27665253	+	2.95782	NA	promoter-TSS (NM_001168364)	promoter-TSS (NM_001168364)	-12	NM_001168364	200634	Hs.59509	NM_173853	HPRD:17254	KRTCAP3	KCP3|MRV222|PRO9898	keratinocyte associated protein 3	protein-coding
16-PTNLD14-TUMOR_peak_4126	chr11	61595611	61595692	+	2.93883	NA	5' UTR (NM_004265, exon 1 of 12)	5' UTR (NM_004265, exon 1 of 12)	146	NM_004265	9415	Hs.502745	NM_004265	HPRD:05854	FADS2	D6D|DES6|FADSD6|LLCDL2|SLL0262|TU13	fatty acid desaturase 2	protein-coding
16-PTNLD14-TUMOR_peak_8094	chr16	69599712	69599792	+	2.92143	NA	promoter-TSS (NM_006599)	promoter-TSS (NM_006599)	19	NR_031719	100302119		NR_031719	miRBase:MI0007259	MIR1538	MIRN1538|hsa-mir-1538	microRNA 1538	ncRNA
16-PTNLD14-TUMOR_peak_1583	chr1	155248168	155248255	+	2.90901	NA	intron (NR_073074, intron 1 of 7)	GC_rich|Low_complexity|Low_complexity	993	NM_020897	57657	Hs.706960	NM_020897	HPRD:17093	HCN3	-	hyperpolarization activated cyclic nucleotide-gated potassium channel 3	protein-coding
16-PTNLD14-TUMOR_peak_15305	chr3	169380404	169380496	+	2.88065	NA	intron (NM_004991, intron 1 of 16)	CpG	1113	NM_001205194	2122	Hs.744090	NM_004991	HPRD:01310	MECOM	AML1-EVI-1|EVI1|MDS1|MDS1-EVI1|PRDM3	MDS1 and EVI1 complex locus	protein-coding
16-PTNLD14-TUMOR_peak_18396	chr6	31620698	31620796	+	2.85642	NA	promoter-TSS (NM_080703)	promoter-TSS (NM_080703)	-270	NM_080703	7917	Hs.440900	NM_004639	HPRD:00808	BAG6	BAG-6|BAT3|D6S52E|G3	BCL2-associated athanogene 6	protein-coding
16-PTNLD14-TUMOR_peak_6826	chr15	21313065	21313138	+	2.85642	NA	Intergenic	(GCTG)n|Simple_repeat|Simple_repeat	167334	NR_040094	348120	Hs.116287	NR_040094	ENSG00000258710	LINC01193	CT60	long intergenic non-protein coding RNA 1193	ncRNA
16-PTNLD14-TUMOR_peak_2711	chr10	38804396	38804459	+	2.77429	NA	Intergenic	(GAATG)n|Satellite|Satellite	87353	NR_024497	399744	Hs.497951	NM_001013665		LINC00999	-	long intergenic non-protein coding RNA 999	ncRNA
16-PTNLD14-TUMOR_peak_179	chr1	11796494	11796594	+	2.76462	NA	intron (NM_001040195, intron 1 of 3)	intron (NM_001040195, intron 1 of 3)	402	NM_020350	57085	Hs.464438	NM_020350	HPRD:16379	AGTRAP	ATRAP	angiotensin II receptor-associated protein	protein-coding
16-PTNLD14-TUMOR_peak_2261	chr1	235473206	235473304	+	2.65749	NA	intron (NM_001206794, intron 2 of 23)	SVA_D|Other|Other	17547	NM_001206794	51742	Hs.575782	NM_016374	HPRD:10661	ARID4B	BCAA|BRCAA1|RBBP1L1|RBP1L1|SAP180	AT rich interactive domain 4B (RBP1-like)	protein-coding
16-PTNLD14-TUMOR_peak_1289	chr1	144186170	144186217	+	2.58082	NA	intron (NM_001278267, intron 20 of 130)	intron (NM_001278267, intron 20 of 130)	39382	NM_001278267	100288142	Hs.445080	NM_001278267	ENSG00000203832	NBPF20	-	neuroblastoma breakpoint family, member 20	protein-coding
16-PTNLD14-TUMOR_peak_18966	chr6	119399922	119400041	+	2.52793	NA	promoter-TSS (NM_024581)	promoter-TSS (NM_024581)	-169	NM_024581	79632	Hs.443789	NM_024581	HPRD:09856	FAM184A	C6orf60	family with sequence similarity 184, member A	protein-coding
16-PTNLD14-TUMOR_peak_9198	chr17	77397350	77397397	+	2.35904	NA	intron (NM_001082575, intron 2 of 14)	intron (NM_001082575, intron 2 of 14)	114857	NM_001082575	146713	Hs.135229	NM_001025448	HPRD:18730	RBFOX3	FOX-3|FOX3|HRNBP3|NEUN	RNA binding protein, fox-1 homolog (C. elegans) 3	protein-coding
16-PTNLD14-TUMOR_peak_2615	chr10	27529727	27529804	+	2.34783	NA	promoter-TSS (NM_145698)	promoter-TSS (NM_145698)	43	NM_001301252	91452	Hs.530597	NM_145698	HPRD:12415	ACBD5	-	acyl-CoA binding domain containing 5	protein-coding
16-PTNLD14-TUMOR_peak_12317	chr2	176995339	176995433	+	2.31250	NA	exon (NM_001199746, exon 1 of 2)	exon (NM_001199746, exon 1 of 2)	918	NM_019558	3234	Hs.301963	NM_019558	HPRD:00868	HOXD8	HOX4|HOX4E|HOX5.4	homeobox D8	protein-coding
16-PTNLD14-TUMOR_peak_20441	chr7	150497478	150497544	+	2.27531	NA	promoter-TSS (NM_018487)	promoter-TSS (NM_018487)	110	NM_001101314	28959	Hs.647090	NM_014020	HPRD:17443	TMEM176B	LR8	transmembrane protein 176B	protein-coding
16-PTNLD14-TUMOR_peak_7101	chr15	73076022	73076136	+	2.22317	NA	promoter-TSS (NM_031284)	promoter-TSS (NM_031284)	47	NR_023318	83440	Hs.654636	NM_031284	HPRD:12429	ADPGK	2610017G09Rik|ADP-GK	ADP-dependent glucokinase	protein-coding
16-PTNLD14-TUMOR_peak_4125	chr11	61595480	61595527	+	2.21366	NA	promoter-TSS (NM_004265)	promoter-TSS (NM_004265)	-2	NM_004265	9415	Hs.502745	NM_004265	HPRD:05854	FADS2	D6D|DES6|FADSD6|LLCDL2|SLL0262|TU13	fatty acid desaturase 2	protein-coding
16-PTNLD14-TUMOR_peak_4396	chr11	73608149	73608239	+	2.01302	NA	intron (NM_001267805, intron 5 of 12)	SVA_D|Other|Other	20180	NM_001267803	80227	Hs.525017	NM_025155	HPRD:07761	PAAF1	PAAF|Rpn14|WDR71	proteasomal ATPase-associated factor 1	protein-coding
	Done annotating peaks file