Peak file = 0101.bed Genome = hg19 Organism = human Peak/BED file conversion summary: BED/Header formatted lines: 26959 peakfile formatted lines: 0 Duplicated Peak IDs: 0 Peak File Statistics: Total Peaks: 26959 Redundant Peak IDs: 0 Peaks lacking information: 0 (need at least 5 columns per peak) Peaks with misformatted coordinates: 0 (should be integer) Peaks with misformatted strand: 0 (should be either +/- or 0/1) Peak file looks good! Reading Positions... ----------------------- Finding Closest TSS... Annotating:..................................... Annotation Number of peaks Total size (bp) Log2 Enrichment 3UTR 207.0 21956084 0.114 miRNA 0.0 48690 -14.718 ncRNA 118.0 5150652 1.395 TTS 408.0 28131434 0.736 pseudo 37.0 1870125 1.184 Exon 504.0 34396507 0.751 Intron 10832.0 1195198075 0.057 Intergenic 11913.0 1773935238 -0.375 Promoter 2688.0 31366147 3.299 5UTR 244.0 2505589 3.483 snoRNA 0.0 119 -14.718 snRNA 0.0 105 -14.718 rRNA 0.0 10999 -14.718 NOTE: If this part takes more than 2 minutes, there is a good chance your machine ran out of memory: consider hitting ctrl+C and rerunning the command with "-noann" To capture annotation stats in a file, use "-annStats " next time Annotating:.......................................... Annotation Number of peaks Total size (bp) Log2 Enrichment 3UTR 207.0 21956084 0.116 Other 55.0 3967993 0.672 Unknown? 1.0 18108 2.666 RNA 4.0 115354 1.995 miRNA 0.0 48690 -14.718 ncRNA 118.0 5150652 1.397 TTS 408.0 28131434 0.737 LINE 2020.0 625402303 -1.430 LINE? 0.0 10448 -14.718 srpRNA 0.0 255223 -14.718 SINE 1176.0 381391704 -1.497 RC 2.0 443678 -0.949 tRNA 16.0 93277 4.301 DNA? 5.0 265211 1.115 pseudo 37.0 1870125 1.185 DNA 568.0 96244175 -0.560 Exon 504.0 34396507 0.752 Intron 7852.0 634551149 0.508 Intergenic 7907.0 904624185 0.006 Promoter 2688.0 31366147 3.300 5UTR 244.0 2505589 3.484 snoRNA 0.0 119 -14.718 LTR? 2.0 21177 3.440 scRNA 1.0 117368 -0.030 CpG-Island 1062.0 9419030 3.696 Low_complexity 20.0 15521355 -2.756 LTR 1937.0 260760554 -0.228 Simple_repeat 45.0 24963754 -2.271 snRNA 3.0 323221 0.093 Unknown 20.0 1252891 0.875 SINE? 0.0 43187 -14.718 Satellite 55.0 12688254 -1.005 rRNA 2.0 182940 0.329 Counting Tags in Peaks from each directory... Organism: human Loading Gene Informaiton... Outputing Annotation File... PeakID (cmd=annotatePeaks.pl 0101.bed hg19) Chr Start End Strand Peak Score Focus Ratio/Region Size Annotation Detailed Annotation Distance to TSS Nearest PromoterID Entrez ID Nearest Unigene Nearest Refseq Nearest Ensembl Gene Name Gene Alias Gene Description Gene Type 13-PTNLD9-TUMOR_peak_1487 chr1 44047930 44048277 + 63.39265 NA intron (NM_130440, intron 7 of 32) intron (NM_130440, intron 7 of 32) 51556 NM_130440 5792 Hs.272062 NM_002840 HPRD:01552 PTPRF LAR protein tyrosine phosphatase, receptor type, F protein-coding 13-PTNLD9-TUMOR_peak_44243 chr6 26351770 26352103 + 62.11670 NA Intergenic MER44D|DNA|TcMar-Tigger -13451 NM_001197249 11118 Hs.376046 NM_007047 HPRD:12547 BTN3A2 BT3.2|BTF4|BTN3.2|CD277 butyrophilin, subfamily 3, member A2 protein-coding 13-PTNLD9-TUMOR_peak_56702 chrX 153438108 153438611 + 51.49495 NA Intergenic MER73|LTR|ERVL -9726 NM_000513 2652 Hs.247787 NM_000513 OPN1MW CBBM|CBD|COD5|GCP|GOP|OPN1MW1 opsin 1 (cone pigments), medium-wave-sensitive protein-coding 13-PTNLD9-TUMOR_peak_1552 chr1 45172864 45173149 + 50.33153 NA intron (NM_001145636, intron 6 of 11) L2c|LINE|L2 -32484 NM_006845 11004 Hs.720061 NM_006845 HPRD:05172 KIF2C CT139|KNSL6|MCAK kinesin family member 2C protein-coding 13-PTNLD9-TUMOR_peak_49276 chr7 137367413 137367755 + 50.02869 NA intron (NM_004717, intron 2 of 33) MLT1J1|LTR|ERVL-MaLR 164025 NM_004717 9162 Hs.242947 NM_004717 HPRD:07238 DGKI DGK-IOTA diacylglycerol kinase, iota protein-coding 13-PTNLD9-TUMOR_peak_15676 chr14 49972140 49972495 + 49.56538 NA Intergenic LTR32|LTR|ERVL 80817 NM_001032 6235 Hs.156367 NM_001032 HPRD:04698 RPS29 DBA13|S29 ribosomal protein S29 protein-coding 13-PTNLD9-TUMOR_peak_21578 chr17 55596543 55597024 + 49.47596 NA intron (NM_138962, intron 6 of 13) intron (NM_138962, intron 6 of 13) 4175 NR_110808 101927557 Hs.639984 NR_110808 ENSG00000266100 LOC101927557 - uncharacterized LOC101927557 ncRNA 13-PTNLD9-TUMOR_peak_56703 chrX 153475234 153475731 + 49.41266 NA Intergenic MER73|LTR|ERVL -9721 NM_001048181 728458 Hs.571751 NM_001048181 ENSG00000166160 OPN1MW2 GOP opsin 1 (cone pigments), medium-wave-sensitive 2 protein-coding 13-PTNLD9-TUMOR_peak_28883 chr2 161071120 161071432 + 49.04388 NA Intergenic Intergenic -14452 NM_001282388 3694 Hs.470399 NM_000888 HPRD:00947 ITGB6 - integrin, beta 6 protein-coding 13-PTNLD9-TUMOR_peak_56704 chrX 153513041 153513536 + 48.67916 NA intron (NM_001586, intron 3 of 4) MER73|LTR|ERVL 10166 NM_001586 1527 Hs.672606 NM_001586 HPRD:02103 TEX28 CXorf2|MRX99|TEX28P1|TEX28P2|fTEX testis expressed 28 protein-coding 13-PTNLD9-TUMOR_peak_41377 chr5 77934252 77934614 + 47.70390 NA intron (NM_005779, intron 1 of 4) MamSINE1|SINE|tRNA 10215 NM_005779 10184 Hs.79299 NM_005779 HPRD:17272 LHFPL2 - lipoma HMGIC fusion partner-like 2 protein-coding 13-PTNLD9-TUMOR_peak_49127 chr7 131310496 131310940 + 47.45332 NA Intergenic Intergenic -69342 NM_001018111 5420 Hs.744213 NM_005397 HPRD:04025 PODXL Gp200|PC|PCLP|PCLP-1 podocalyxin-like protein-coding 13-PTNLD9-TUMOR_peak_25881 chr1_gl000192_random 224974 225325 + 47.07153 NA intron (NR_103556, intron 20 of 45) intron (NR_103556, intron 20 of 45) 182361 NR_103556 100288805 Hs.648712 NR_049745 HYDIN2 HYDINP1 HYDIN2, axonemal central pair apparatus protein (pseudogene) pseudo 13-PTNLD9-TUMOR_peak_52011 chr8 129121214 129121651 + 45.68150 NA Intergenic Intergenic -40930 NR_031613 100302281 NR_031613 miRBase:MI0006341 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 13-PTNLD9-TUMOR_peak_43774 chr6 11344349 11344973 + 45.11720 NA intron (NR_073131, intron 1 of 9) intron (NR_073131, intron 1 of 9) 37920 NM_001142393 4739 Hs.37982 NM_006403 HPRD:11888 NEDD9 CAS-L|CAS2|CASL|CASS2|HEF1 neural precursor cell expressed, developmentally down-regulated 9 protein-coding 13-PTNLD9-TUMOR_peak_39751 chr4 159015917 159016206 + 44.87671 NA Intergenic MER41B|LTR|ERV1 77657 NM_016613 51313 Hs.567498 NM_016613 HPRD:13194 FAM198B AD036|C4orf18 family with sequence similarity 198, member B protein-coding 13-PTNLD9-TUMOR_peak_31683 chr20 56268058 56268609 + 44.38169 NA intron (NM_199171, intron 1 of 3) intron (NM_199171, intron 1 of 3) -2653 NM_001255976 56937 Hs.517155 NM_020182 HPRD:09415 PMEPA1 STAG1|TMEPAI prostate transmembrane protein, androgen induced 1 protein-coding 13-PTNLD9-TUMOR_peak_43887 chr6 14271101 14271661 + 44.30441 NA Intergenic Intergenic 14304 NR_108097 102216342 Hs.563409 NR_108096 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 13-PTNLD9-TUMOR_peak_52895 chr9 21591652 21591925 + 44.11179 NA Intergenic Intergenic -32091 NR_027054 554202 Hs.458096 NR_027054 MIR31HG - MIR31 host gene (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_1415 chr1 42995617 42995877 + 44.03108 NA Intergenic MER44D|DNA|TcMar-Tigger -4813 NM_001080850 728621 Hs.729640 NM_001080850 HPRD:08632 CCDC30 PFD6L|PFDN6L coiled-coil domain containing 30 protein-coding 13-PTNLD9-TUMOR_peak_48642 chr7 102145874 102146359 + 44.02865 NA intron (NM_001277335, intron 5 of 19) intron (NM_001277335, intron 5 of 19) 12108 NM_001277335 100271927 Hs.530089 NM_001277335 ENSG00000170667 RASA4B - RAS p21 protein activator 4B protein-coding 13-PTNLD9-TUMOR_peak_40192 chr5 1516316 1516682 + 43.62749 NA intron (NM_024830, intron 1 of 13) intron (NM_024830, intron 1 of 13) -5528 NR_106723 102466103 NR_106723 MIR6075 hsa-mir-6075 microRNA 6075 ncRNA 13-PTNLD9-TUMOR_peak_51415 chr8 101801223 101801500 + 43.41292 NA Intergenic L2c|LINE|L2 -67046 NM_002568 26986 Hs.387804 NM_002568 HPRD:05247 PABPC1 PAB1|PABP|PABP1|PABPC2|PABPL1 poly(A) binding protein, cytoplasmic 1 protein-coding 13-PTNLD9-TUMOR_peak_48654 chr7 102245003 102245529 + 43.40777 NA intron (NM_001079877, intron 5 of 19) intron (NM_001079877, intron 5 of 19) 11937 NM_001277335 100271927 Hs.530089 NM_001277335 ENSG00000170667 RASA4B - RAS p21 protein activator 4B protein-coding 13-PTNLD9-TUMOR_peak_33665 chr3 8911425 8911807 + 43.39835 NA Intergenic L2b|LINE|L2 93543 NM_020165 56852 Hs.375684 NM_020165 HPRD:09242 RAD18 RNF73 RAD18 E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_27881 chr2 102844162 102844512 + 43.39340 NA intron (NM_003854, intron 9 of 11) intron (NM_003854, intron 9 of 11) 40904 NM_003854 8808 Hs.659863 NM_003854 HPRD:05150 IL1RL2 IL-1Rrp2|IL-36R|IL1R-rp2|IL1RRP2 interleukin 1 receptor-like 2 protein-coding 13-PTNLD9-TUMOR_peak_35731 chr3 126259291 126259481 + 43.25392 NA intron (NM_152889, intron 2 of 2) L1MB7|LINE|L1 16255 NM_152889 166012 Hs.292375 NM_152889 HPRD:13057 CHST13 C4ST3 carbohydrate (chondroitin 4) sulfotransferase 13 protein-coding 13-PTNLD9-TUMOR_peak_47336 chr7 44008158 44008556 + 43.13437 NA intron (NR_003655, intron 10 of 15) intron (NR_003655, intron 10 of 15) -32132 NM_175064 285955 Hs.645483 NM_175064 HPRD:11677 SPDYE1 Ringo1|SPDYE|WBSCR19 speedy/RINGO cell cycle regulator family member E1 protein-coding 13-PTNLD9-TUMOR_peak_33810 chr3 12804795 12805127 + 42.60795 NA intron (NM_001284406, intron 1 of 11) intron (NM_001284406, intron 1 of 11) -4153 NM_018306 55287 Hs.475502 NM_018306 HPRD:08559 TMEM40 - transmembrane protein 40 protein-coding 13-PTNLD9-TUMOR_peak_27725 chr2 97158856 97159151 + 42.56847 NA Intergenic Intergenic 12119 NM_001285486 93082 Hs.149219 NM_001080535 HPRD:14296 NEURL3 LINCR neuralized E3 ubiquitin protein ligase 3 protein-coding 13-PTNLD9-TUMOR_peak_4697 chr1 183167622 183167902 + 42.18421 NA intron (NM_018891, intron 1 of 21) intron (NM_018891, intron 1 of 21) 12588 NM_018891 3918 Hs.591484 NM_005562 HPRD:01031 LAMC2 B2T|BM600|CSF|EBR2|EBR2A|LAMB2T|LAMNB2 laminin, gamma 2 protein-coding 13-PTNLD9-TUMOR_peak_10184 chr11 64774341 64774658 + 42.08092 NA Intergenic Intergenic -7086 NM_001667 402 Hs.502836 NM_001667 HPRD:11869 ARL2 ARFL2 ADP-ribosylation factor-like 2 protein-coding 13-PTNLD9-TUMOR_peak_4906 chr1 200628432 200628684 + 42.07603 NA intron (NM_001031725, intron 3 of 7) intron (NM_001031725, intron 3 of 7) -10077 NR_110787 101929224 Hs.639369 NR_110787 ENSG00000260088 LOC101929224 - uncharacterized LOC101929224 ncRNA 13-PTNLD9-TUMOR_peak_39328 chr4 129450374 129450618 + 41.82334 NA Intergenic L2c|LINE|L2 -240512 NM_006320 10424 Hs.507910 NM_006320 HPRD:09665 PGRMC2 DG6|PMBP progesterone receptor membrane component 2 protein-coding 13-PTNLD9-TUMOR_peak_36849 chr3 178311439 178311842 + 41.80070 NA intron (NM_001278911, intron 1 of 4) L2|LINE|L2 35152 NM_001278911 10242 Hs.478368 NM_005832 HPRD:05557 KCNMB2 - potassium large conductance calcium-activated channel, subfamily M, beta member 2 protein-coding 13-PTNLD9-TUMOR_peak_45220 chr6 46961666 46961864 + 41.60571 NA Intergenic L2|LINE|L2 -39090 NM_015234 221395 Hs.362806 NM_015234 HPRD:11010 GPR116 KPG_001 G protein-coupled receptor 116 protein-coding 13-PTNLD9-TUMOR_peak_49002 chr7 128533232 128533545 + 41.42329 NA intron (NM_001135914, intron 11 of 36) intron (NM_001135914, intron 11 of 36) 17385 NM_001135914 375616 Hs.371746 NM_199349 KCP CRIM2|KCP1|NET67 kielin/chordin-like protein protein-coding 13-PTNLD9-TUMOR_peak_28592 chr2 138686461 138686668 + 41.30133 NA Intergenic Intergenic -1062 NR_120402 101928273 Hs.560928 NR_120402 ENSG00000234007 LOC101928273 - uncharacterized LOC101928273 ncRNA 13-PTNLD9-TUMOR_peak_49236 chr7 135459065 135459338 + 41.21807 NA Intergenic Intergenic -25607 NM_205855 389558 Hs.55200 NM_205855 HPRD:15613 FAM180A UNQ1940 family with sequence similarity 180, member A protein-coding 13-PTNLD9-TUMOR_peak_46820 chr7 6345997 6346404 + 40.59311 NA Intergenic L1MB3|LINE|L1 -33958 NM_004227 9265 Hs.487479 NM_004227 HPRD:05469 CYTH3 ARNO3|GRP1|PSCD3 cytohesin 3 protein-coding 13-PTNLD9-TUMOR_peak_48664 chr7 102516293 102516563 + 40.49096 NA intron (NR_105043, intron 17 of 20) LTR33A_|LTR|ERVL -36916 NM_005824 10234 Hs.567412 NM_005824 HPRD:10059 LRRC17 P37NB leucine rich repeat containing 17 protein-coding 13-PTNLD9-TUMOR_peak_42637 chr5 149877216 149877475 + 40.35344 NA promoter-TSS (NM_001301063) promoter-TSS (NM_001301063) 5 NM_001301063 3340 Hs.222055 NM_001543 HPRD:02912 NDST1 HSST|NST1 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1 protein-coding 13-PTNLD9-TUMOR_peak_39673 chr4 153919035 153919288 + 40.28608 NA Intergenic Intergenic 55026 NM_033393 85462 Hs.132629 NM_033393 HPRD:13888 FHDC1 - FH2 domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_31165 chr20 43756716 43757014 + 40.18608 NA Intergenic Intergenic -3759 NM_080869 128488 Hs.352180 NM_080869 HPRD:15674 WFDC12 C20orf122|SWAM2|WAP2|dJ211D12.4 WAP four-disulfide core domain 12 protein-coding 13-PTNLD9-TUMOR_peak_31728 chr20 57658083 57658444 + 40.09008 NA Intergenic Intergenic -40362 NM_016045 51012 Hs.656865 NM_016045 HPRD:12771 SLMO2 C20orf45|PRELID3B|dJ543J19.5 slowmo homolog 2 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_5025 chr1 202205007 202205273 + 39.92019 NA intron (NM_001017404, intron 4 of 15) intron (NM_001017404, intron 4 of 15) 21857 NM_001017404 59352 Hs.497402 NM_021636 HPRD:05974 LGR6 GPCR|VTS20631 leucine-rich repeat containing G protein-coupled receptor 6 protein-coding 13-PTNLD9-TUMOR_peak_7829 chr10 79708970 79709259 + 39.88705 NA Intergenic Intergenic 22544 NR_024585 100128292 Hs.547908 NR_024585 DLG5-AS1 - DLG5 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_3388 chr1 147189150 147189504 + 39.79178 NA Intergenic LTR18B|LTR|ERVL 43387 NM_181703 2702 Hs.447968 NM_005266 HPRD:08699 GJA5 ATFB11|CX40 gap junction protein, alpha 5, 40kDa protein-coding 13-PTNLD9-TUMOR_peak_37488 chr3 197445851 197446135 + 39.78755 NA intron (NM_001145642, intron 1 of 20) MamRep605|Unknown|Unknown 17804 NM_014687 9711 Hs.478868 NM_014687 ENSG00000145016 KIAA0226 RUBICON|SCAR15 KIAA0226 protein-coding 13-PTNLD9-TUMOR_peak_31640 chr20 55287237 55287553 + 39.65506 NA Intergenic Intergenic 83037 NM_003222 7022 Hs.473152 NM_003222 HPRD:03361 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma) protein-coding 13-PTNLD9-TUMOR_peak_48066 chr7 76212582 76212896 + 39.65506 NA intron (NR_029411, intron 2 of 2) intron (NR_029411, intron 2 of 2) 34081 NR_029411 100133091 Hs.712837 NR_029411 ENSG00000205485 LOC100133091 - uncharacterized LOC100133091 ncRNA 13-PTNLD9-TUMOR_peak_15327 chr14 23584256 23584537 + 39.50771 NA Intergenic Intergenic 4424 NM_001805 1053 Hs.558308 NM_001805 HPRD:02852 CEBPE C/EBP-epsilon|CRP1 CCAAT/enhancer binding protein (C/EBP), epsilon protein-coding 13-PTNLD9-TUMOR_peak_228 chr1 7177688 7178258 + 39.50045 NA intron (NM_015215, intron 4 of 22) intron (NM_015215, intron 4 of 22) 332589 NR_038934 23261 Hs.397705 NM_015215 HPRD:16681 CAMTA1 CANPMR calmodulin binding transcription activator 1 protein-coding 13-PTNLD9-TUMOR_peak_35510 chr3 119889131 119889377 + 39.49379 NA intron (NM_153002, intron 8 of 8) intron (NM_153002, intron 8 of 8) 73888 NM_001168271 165829 Hs.333358 NM_153002 HPRD:17067 GPR156 GABABL|PGR28 G protein-coupled receptor 156 protein-coding 13-PTNLD9-TUMOR_peak_11146 chr11 108487338 108487672 + 39.23161 NA Intergenic Intergenic -23131 NM_015065 23086 Hs.28540 NM_015065 HPRD:08341 EXPH5 SLAC2-B|SLAC2B exophilin 5 protein-coding 13-PTNLD9-TUMOR_peak_44496 chr6 30894532 30894784 + 38.97077 NA TTS (NM_001167733).4 TTS (NM_001167733).4 5294 NM_205854 389376 Hs.211267 NM_205854 HPRD:18265 SFTA2 GSGL541|SFTPG|SP-G|UNQ541 surfactant associated 2 protein-coding 13-PTNLD9-TUMOR_peak_5655 chr1 226864841 226865182 + 38.92949 NA intron (NM_002221, intron 2 of 7) intron (NM_002221, intron 2 of 7) -2242 NR_103784 100506443 Hs.664293 NR_103784 ITPKB-IT1 - ITPKB intronic transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_54186 chr9 100985551 100985898 + 38.88543 NA intron (NR_051978, intron 4 of 11) intron (NR_051978, intron 4 of 11) 5775 NR_106913 102465514 NR_106913 MIR6854 hsa-mir-6854 microRNA 6854 ncRNA 13-PTNLD9-TUMOR_peak_19707 chr16 70979957 70980347 + 38.83266 NA intron (NM_001270974, intron 41 of 85) L2a|LINE|L2 -145091 NM_018052 55697 Hs.445061 NM_018052 HPRD:07660 VAC14 ArPIKfyve|TAX1BP2|TRX Vac14 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_28273 chr2 121297975 121298297 + 38.68639 NA Intergenic Intergenic -74211 NR_027181 84931 Hs.334519 NM_032845 HPRD:08604 LINC01101 - long intergenic non-protein coding RNA 1101 ncRNA 13-PTNLD9-TUMOR_peak_5608 chr1 225696296 225696524 + 38.36261 NA intron (NM_001008493, intron 10 of 14) intron (NM_001008493, intron 10 of 14) -79853 NM_194442 3930 Hs.435166 NM_002296 HPRD:02488 LBR DHCR14B|LMN2R|PHA|TDRD18 lamin B receptor protein-coding 13-PTNLD9-TUMOR_peak_35787 chr3 127536383 127536694 + 38.31027 NA intron (NM_001003794, intron 2 of 7) intron (NM_001003794, intron 2 of 7) 5187 NM_007283 11343 Hs.277035 NM_007283 HPRD:17574 MGLL HU-K5|HUK5|MAGL|MGL monoglyceride lipase protein-coding 13-PTNLD9-TUMOR_peak_37885 chr4 8395433 8395706 + 38.16161 NA intron (NM_003501, intron 10 of 17) intron (NM_003501, intron 10 of 17) 46883 NM_001101667 8310 Hs.479122 NM_003501 HPRD:04552 ACOX3 - acyl-CoA oxidase 3, pristanoyl protein-coding 13-PTNLD9-TUMOR_peak_4958 chr1 201430320 201430592 + 38.07197 NA Intergenic L2c|LINE|L2 7843 NR_073080 23612 Hs.268557 NM_012396 HPRD:09519 PHLDA3 TIH1 pleckstrin homology-like domain, family A, member 3 protein-coding 13-PTNLD9-TUMOR_peak_11554 chr11 126243601 126243830 + 37.93160 NA intron (NM_006278, intron 1 of 10) intron (NM_006278, intron 1 of 10) 17926 NM_006278 6484 Hs.591947 NM_006278 HPRD:00084 ST3GAL4 CGS23|NANTA3|SAT3|SIAT4|SIAT4C|ST3GalIV|STZ ST3 beta-galactoside alpha-2,3-sialyltransferase 4 protein-coding 13-PTNLD9-TUMOR_peak_5231 chr1 205858900 205859140 + 37.93160 NA intron (NR_046097, intron 1 of 2) HERVH-int|LTR|ERV1 27813 NR_046097 284581 NR_046097 LOC284581 - uncharacterized LOC284581 ncRNA 13-PTNLD9-TUMOR_peak_39256 chr4 123704410 123704830 + 37.83408 NA Intergenic Intergenic -43243 NM_002006 2247 Hs.284244 NM_002006 HPRD:00622 FGF2 BFGF|FGF-2|FGFB|HBGF-2 fibroblast growth factor 2 (basic) protein-coding 13-PTNLD9-TUMOR_peak_47961 chr7 74234937 74235264 + 37.79513 NA intron (NM_173537, intron 6 of 15).2 MER44B|DNA|TcMar-Tigger 32772 NM_173537 84163 Hs.647017 NM_173537 HPRD:16402 GTF2IRD2 FP630|GTF2IRD2 alpha|GTF2IRD2A GTF2I repeat domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_49453 chr7 142510983 142511300 + 37.61624 NA Intergenic Intergenic 31233 NM_002770 5645 Hs.449281 NM_002770 PRSS2 TRY2|TRY8|TRYP2 protease, serine, 2 (trypsin 2) protein-coding 13-PTNLD9-TUMOR_peak_53957 chr9 93063631 93063817 + 37.58202 NA non-coding (NR_109795, exon 3 of 3) non-coding (NR_109795, exon 3 of 3) 132047 NR_109795 101927873 Hs.598482 NR_109795 LINC01508 - long intergenic non-protein coding RNA 1508 ncRNA 13-PTNLD9-TUMOR_peak_45154 chr6 44420578 44420842 + 37.53020 NA Intergenic Intergenic 17332 NR_039785 100616352 NR_039785 MIR4642 - microRNA 4642 ncRNA 13-PTNLD9-TUMOR_peak_51343 chr8 96814149 96814380 + 37.52348 NA intron (NR_038201, intron 5 of 5) intron (NR_038201, intron 5 of 5) 146312 NR_036611 100500773 Hs.741582 NR_036611 LOC100500773 - serine/arginine-rich splicing factor 3 pseudogene pseudo 13-PTNLD9-TUMOR_peak_3666 chr1 152135329 152135680 + 37.48549 NA Intergenic Intergenic -3800 NM_001122965 126638 Hs.376144 NM_152364 ENSG00000215853 RPTN - repetin protein-coding 13-PTNLD9-TUMOR_peak_37174 chr3 189110757 189111064 + 37.33892 NA Intergenic Intergenic -152527 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_30929 chr20 35437160 35437612 + 37.28927 NA intron (NM_080627, intron 7 of 14) intron (NM_080627, intron 7 of 14) -35156 NM_001145318 79980 Hs.632268 NM_024918 HPRD:16455 DSN1 C20orf172|KNL3|MIS13|dJ469A13.2|hKNL-3 DSN1, MIS12 kinetochore complex component protein-coding 13-PTNLD9-TUMOR_peak_9496 chr11 34265286 34265570 + 37.24572 NA intron (NM_145804, intron 1 of 16) intron (NM_145804, intron 1 of 16) 114127 NM_145804 25841 Hs.23361 NM_145804 HPRD:10624 ABTB2 ABTB2A|BTBD22 ankyrin repeat and BTB (POZ) domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_49626 chr7 150435816 150436067 + 37.21695 NA intron (NM_018384, intron 1 of 2) intron (NM_018384, intron 1 of 2) 1505 NM_018384 55340 Hs.647079 NM_018384 HPRD:16280 GIMAP5 HIMAP3|IAN-5|IAN4|IAN4L1|IAN5|IMAP3|IROD GTPase, IMAP family member 5 protein-coding 13-PTNLD9-TUMOR_peak_48363 chr7 95238109 95238484 + 37.14130 NA Intergenic Intergenic -12371 NM_002612 5166 Hs.8364 NM_002612 HPRD:03957 PDK4 - pyruvate dehydrogenase kinase, isozyme 4 protein-coding 13-PTNLD9-TUMOR_peak_7498 chr10 63836779 63836991 + 37.12581 NA intron (NM_001244638, intron 5 of 6) intron (NM_001244638, intron 5 of 6) 27915 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT rich interactive domain 5B (MRF1-like) protein-coding 13-PTNLD9-TUMOR_peak_37036 chr3 185618037 185618329 + 37.07300 NA Intergenic Intergenic 37741 NM_001243879 6434 Hs.533122 NM_004593 TRA2B Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B transformer 2 beta homolog (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_37962 chr4 9906677 9906969 + 37.07300 NA intron (NM_001001290, intron 9 of 12) intron (NM_001001290, intron 9 of 12) 116291 NM_020041 56606 Hs.656895 NM_020041 HPRD:05848 SLC2A9 GLUT9|GLUTX|UAQTL2|URATv1 solute carrier family 2 (facilitated glucose transporter), member 9 protein-coding 13-PTNLD9-TUMOR_peak_35937 chr3 131854881 131855182 + 37.00613 NA Intergenic Intergenic -96581 NM_153429 131034 Hs.199877 NM_130808 HPRD:05017 CPNE4 COPN4|CPN4 copine IV protein-coding 13-PTNLD9-TUMOR_peak_37187 chr3 189655298 189655869 + 36.99624 NA Intergenic Intergenic 107872 NR_030642 100126340 NR_030642 MIR944 MIRN944|hsa-mir-944 microRNA 944 ncRNA 13-PTNLD9-TUMOR_peak_26307 chr2 24238459 24238858 + 36.99490 NA intron (NM_001080473, intron 2 of 12) intron (NM_001080473, intron 2 of 12) 5705 NM_001080473 388931 Hs.407482 NM_001080473 ENSG00000205639 MFSD2B - major facilitator superfamily domain containing 2B protein-coding 13-PTNLD9-TUMOR_peak_52166 chr8 134332715 134333227 + 36.92056 NA Intergenic Intergenic -23424 NM_006096 10397 Hs.372914 NM_006096 HPRD:05586 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 13-PTNLD9-TUMOR_peak_47858 chr7 72681012 72681323 + 36.84377 NA Intergenic MER44B|DNA|TcMar-Tigger 41697 NM_018044 55695 Hs.510927 NM_018044 HPRD:11678 NSUN5 NOL1|NOL1R|NSUN5A|WBSCR20|WBSCR20A|p120 NOP2/Sun domain family, member 5 protein-coding 13-PTNLD9-TUMOR_peak_27633 chr2 92219987 92220301 + 36.81813 NA Intergenic HERVL-int|LTR|ERVL 90985 NR_027714 440888 Hs.730239 NM_001032412 ENSG00000226481 ACTR3BP2 FKSG73 ACTR3B pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_47977 chr7 74541022 74541334 + 36.78194 NA intron (NM_001003795, intron 6 of 15) MER44B|DNA|TcMar-Tigger 32831 NM_173537 84163 Hs.647017 NM_173537 HPRD:16402 GTF2IRD2 FP630|GTF2IRD2 alpha|GTF2IRD2A GTF2I repeat domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_10503 chr11 71010381 71010690 + 36.64603 NA Intergenic Intergenic -74693 NM_012309 22941 Hs.268726 NM_012309 HPRD:04479 SHANK2 AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 SH3 and multiple ankyrin repeat domains 2 protein-coding 13-PTNLD9-TUMOR_peak_51400 chr8 101470946 101471309 + 36.62739 NA Intergenic Intergenic 76136 NR_039681 100616451 NR_039681 miRBase:MI0016822 MIR4471 - microRNA 4471 ncRNA 13-PTNLD9-TUMOR_peak_45356 chr6 53918930 53919207 + 36.58345 NA intron (NM_001281746, intron 1 of 11) intron (NM_001281746, intron 1 of 11) 35354 NM_001281746 90523 Hs.449276 NM_138569 HPRD:12853 MLIP C6orf142 muscular LMNA-interacting protein protein-coding 13-PTNLD9-TUMOR_peak_11613 chr11 129013313 129013612 + 36.57745 NA intron (NM_001142685, intron 2 of 21) MER44C|DNA|TcMar-Tigger 48631 NM_001142685 9743 Hs.440379 NM_014715 HPRD:12257 ARHGAP32 GC-GAP|GRIT|PX-RICS|RICS|p200RhoGAP|p250GAP Rho GTPase activating protein 32 protein-coding 13-PTNLD9-TUMOR_peak_39519 chr4 144267441 144267713 + 36.54945 NA intron (NM_207123, intron 1 of 10) intron (NM_207123, intron 1 of 10) 9594 NM_002039 2549 Hs.80720 NM_002039 HPRD:05116 GAB1 - GRB2-associated binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_9198 chr11 16916946 16917304 + 36.48185 NA intron (NM_175058, intron 3 of 22) intron (NM_175058, intron 3 of 22) 118838 NM_175058 144100 Hs.12332 NM_175058 HPRD:15142 PLEKHA7 - pleckstrin homology domain containing, family A member 7 protein-coding 13-PTNLD9-TUMOR_peak_4655 chr1 182070594 182070841 + 36.47028 NA Intergenic Intergenic -39870 NM_001009992 127665 Hs.684328 NM_001009992 HPRD:18361 ZNF648 - zinc finger protein 648 protein-coding 13-PTNLD9-TUMOR_peak_9619 chr11 43852488 43852784 + 36.47028 NA intron (NM_016142, intron 7 of 10) intron (NM_016142, intron 7 of 10) -49721 NM_139178 221120 Hs.720708 NM_139178 HPRD:16793 ALKBH3 ABH3|DEPC-1|DEPC1|PCA1 alkB, alkylation repair homolog 3 (E. coli) protein-coding 13-PTNLD9-TUMOR_peak_42939 chr5 168777729 168778202 + 36.43026 NA Intergenic Intergenic -49832 NM_003062 6586 Hs.552087 NM_003062 HPRD:04775 SLIT3 MEGF5|SLIL2|SLIT1|Slit-3|slit2 slit homolog 3 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_37572 chr4 1317681 1318708 + 36.42006 NA intron (NM_001297432, intron 4 of 8) HAL1-2a_MD|LINE|L1 14615 NM_001297433 10296 Hs.139896 NM_005882 HPRD:08427 MAEA EMLP|EMP|GID9|HLC-10|PIG5 macrophage erythroblast attacher protein-coding 13-PTNLD9-TUMOR_peak_37066 chr3 186470794 186471091 + 36.38887 NA Intergenic Intergenic -30419 NM_001967 1974 Hs.518475 NM_001967 HPRD:03062 EIF4A2 BM-010|DDX2B|EIF4A|EIF4F|eIF-4A-II|eIF4A-II eukaryotic translation initiation factor 4A2 protein-coding 13-PTNLD9-TUMOR_peak_44883 chr6 37693713 37694081 + 36.38169 NA Intergenic Intergenic -28131 NM_153487 266727 Hs.437993 NM_153487 HPRD:14374 MDGA1 GPIM|MAMDC3 MAM domain containing glycosylphosphatidylinositol anchor 1 protein-coding 13-PTNLD9-TUMOR_peak_10449 chr11 69312005 69312287 + 36.36053 NA Intergenic Intergenic 11817 NR_120545 101928292 Hs.736219 NR_120542 LINC01488 - long intergenic non-protein coding RNA 1488 ncRNA 13-PTNLD9-TUMOR_peak_3100 chr1 120633391 120633713 + 36.26915 NA Intergenic Intergenic -21235 NM_024408 4853 Hs.487360 NM_024408 HPRD:02606 NOTCH2 AGS2|HJCYS|hN2 notch 2 protein-coding 13-PTNLD9-TUMOR_peak_7277 chr10 48257641 48258131 + 36.17671 NA intron (NM_001271703, intron 1 of 9) intron (NM_001271703, intron 1 of 9) 2682 NM_001040084 653145 Hs.535306 NM_001040084 ENSG00000165390 ANXA8 ANX8 annexin A8 protein-coding 13-PTNLD9-TUMOR_peak_45384 chr6 56803399 56803854 + 36.17360 NA intron (NM_001144769, intron 2 of 96) MLT1H|LTR|ERVL-MaLR 15800 NM_001144769 667 Hs.604915 NM_001723 HPRD:00222 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 13-PTNLD9-TUMOR_peak_30151 chr2 239991084 239991493 + 36.13931 NA promoter-TSS (NR_039642) promoter-TSS (NR_039642) -678 NR_039642 100616397 NR_039642 MIR4440 - microRNA 4440 ncRNA 13-PTNLD9-TUMOR_peak_27631 chr2 92008521 92008832 + 36.11383 NA Intergenic HERVL-int|LTR|ERVL 45308 NR_003503 645367 Hs.650223 NR_003503 GGT8P GGT1P1 gamma-glutamyltransferase 8 pseudogene pseudo 13-PTNLD9-TUMOR_peak_3716 chr1 153488437 153488700 + 36.05250 NA Intergenic Intergenic 20149 NM_014624 6277 Hs.275243 NM_014624 HPRD:00237 S100A6 2A9|5B10|CABP|CACY|PRA S100 calcium binding protein A6 protein-coding 13-PTNLD9-TUMOR_peak_14316 chr12 131130596 131130985 + 36.04557 NA Intergenic C-rich|Low_complexity|Low_complexity -128380 NM_015347 23504 Hs.657441 NM_015347 HPRD:17183 RIMBP2 PPP1R133|RBP2|RIM-BP2 RIMS binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_49676 chr7 151295223 151295500 + 35.98340 NA intron (NM_001040633, intron 5 of 15) L1MA6|LINE|L1 33983 NM_024429 51422 Hs.647072 NM_016203 HPRD:04119 PRKAG2 AAKG|AAKG2|CMH6|H91620p|WPWS protein kinase, AMP-activated, gamma 2 non-catalytic subunit protein-coding 13-PTNLD9-TUMOR_peak_2278 chr1 82197740 82197993 + 35.88951 NA intron (NM_001297704, intron 1 of 20) intron (NM_001297704, intron 1 of 20) 32411 NM_001297704 23266 Hs.24212 NM_012302 HPRD:06116 LPHN2 CIRL2|CL2|LEC1|LPHH1 latrophilin 2 protein-coding 13-PTNLD9-TUMOR_peak_23137 chr18 46468988 46469259 + 35.87019 NA promoter-TSS (NM_001190823) promoter-TSS (NM_001190823) 54 NM_001190823 4092 Hs.465087 NM_005904 HPRD:04241 SMAD7 CRCS3|MADH7|MADH8 SMAD family member 7 protein-coding 13-PTNLD9-TUMOR_peak_28267 chr2 121156735 121157083 + 35.82814 NA Intergenic Intergenic 53190 NM_002193 3625 Hs.1735 NM_002193 HPRD:00934 INHBB - inhibin, beta B protein-coding 13-PTNLD9-TUMOR_peak_4315 chr1 167766298 167766575 + 35.77401 NA Intergenic Intergenic 75249 NM_001146191 9019 Hs.493919 NM_003953 HPRD:05086 MPZL1 MPZL1b|PZR|PZR1b|PZRa|PZRb myelin protein zero-like 1 protein-coding 13-PTNLD9-TUMOR_peak_5747 chr1 228996941 228997279 + 35.71705 NA Intergenic Intergenic 126286 NM_021205 58480 Hs.647774 NM_021205 HPRD:06965 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 13-PTNLD9-TUMOR_peak_24107 chr19 13143028 13143297 + 35.71238 NA intron (NM_001271043, intron 2 of 10) L2c|LINE|L2 7767 NM_001271043 4784 Hs.257970 NM_002501 HPRD:01234 NFIX MRSHSS|NF1A|SOTOS2 nuclear factor I/X (CCAAT-binding transcription factor) protein-coding 13-PTNLD9-TUMOR_peak_5687 chr1 228122400 228122973 + 35.70342 NA intron (NM_003395, intron 1 of 3) intron (NM_003395, intron 1 of 3) 6698 NR_049806 100847072 NR_049806 MIR5008 - microRNA 5008 ncRNA 13-PTNLD9-TUMOR_peak_45171 chr6 45534672 45534939 + 35.70033 NA Intergenic Intergenic 144491 NM_001278478 860 Hs.535845 NM_004348 HPRD:02566 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA runt-related transcription factor 2 protein-coding 13-PTNLD9-TUMOR_peak_28857 chr2 160011955 160012252 + 35.69692 NA intron (NM_001145909, intron 7 of 26) intron (NM_001145909, intron 7 of 26) -31243 NR_106948 102465535 NR_106948 MIR6888 hsa-mir-6888 microRNA 6888 ncRNA 13-PTNLD9-TUMOR_peak_52095 chr8 131661885 131662166 + 35.65305 NA Intergenic MLT1L|LTR|ERVL-MaLR -206119 NM_018482 50807 Hs.655552 NM_018482 HPRD:05809 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 13-PTNLD9-TUMOR_peak_54406 chr9 112318432 112318707 + 35.65207 NA Intergenic L2c|LINE|L2 -57976 NM_001145368 5774 Hs.436429 NM_002829 HPRD:06767 PTPN3 PTP-H1|PTPH1 protein tyrosine phosphatase, non-receptor type 3 protein-coding 13-PTNLD9-TUMOR_peak_49224 chr7 135018041 135018294 + 35.57770 NA Intergenic Intergenic 101436 NM_182489 346673 Hs.592279 NM_182489 HPRD:18123 STRA8 - stimulated by retinoic acid 8 protein-coding 13-PTNLD9-TUMOR_peak_43048 chr5 172358171 172358545 + 35.55326 NA intron (NM_001031711, intron 7 of 9) intron (NM_001031711, intron 7 of 9) 27420 NR_026683 100268168 Hs.519766 NR_026682 ENSG00000204758 LOC100268168 - uncharacterized LOC100268168 ncRNA 13-PTNLD9-TUMOR_peak_28833 chr2 158867560 158867871 + 35.50991 NA intron (NM_001135098, intron 1 of 8) intron (NM_001135098, intron 1 of 8) 16024 NM_001135098 151531 Hs.128427 NM_173355 HPRD:15627 UPP2 UDRPASE2|UP2|UPASE2 uridine phosphorylase 2 protein-coding 13-PTNLD9-TUMOR_peak_51532 chr8 106082059 106082457 + 35.45026 NA Intergenic Intergenic -248889 NM_012082 23414 Hs.431009 NM_012082 HPRD:04737 ZFPM2 DIH3|FOG2|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 13-PTNLD9-TUMOR_peak_43972 chr6 17116100 17116530 + 35.44835 NA intron (NM_001190766, intron 2 of 4) intron (NM_001190766, intron 2 of 4) 13826 NM_001190766 401236 Hs.677399 NM_001190766 ENSG00000230873 STMND1 - stathmin domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_35473 chr3 118527625 118527879 + 35.44835 NA Intergenic Intergenic -134171 NR_046230 100506765 Hs.660823 NR_046230 ENSG00000239877 IGSF11-AS1 - IGSF11 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_35895 chr3 130114831 130115015 + 35.43557 NA intron (NM_153264, intron 8 of 39) MER102b|DNA|hAT-Charlie 50564 NR_022012 256076 Hs.205403 NM_153264 HPRD:08196 COL6A5 COL29A1|VWA4 collagen, type VI, alpha 5 protein-coding 13-PTNLD9-TUMOR_peak_51928 chr8 126676579 126677013 + 35.42719 NA Intergenic Intergenic 232345 NM_001282985 10221 Hs.444947 NM_025195 HPRD:09863 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 13-PTNLD9-TUMOR_peak_52544 chr8 145992886 145993879 + 35.42022 NA Intergenic Intergenic -12412 NM_138367 90987 Hs.534516 NM_138367 ENSG00000198169 ZNF251 - zinc finger protein 251 protein-coding 13-PTNLD9-TUMOR_peak_43522 chr6 3324692 3324970 + 35.36109 NA intron (NR_104448, intron 3 of 11) intron (NR_104448, intron 3 of 11) 65669 NM_001128592 389362 Hs.207069 NM_001128591 ENSG00000180822 PSMG4 C6orf86|PAC4|bA506K6.2 proteasome (prosome, macropain) assembly chaperone 4 protein-coding 13-PTNLD9-TUMOR_peak_44879 chr6 37598071 37598479 + 35.27983 NA Intergenic MLT1M|LTR|ERVL-MaLR 67491 NM_153487 266727 Hs.437993 NM_153487 HPRD:14374 MDGA1 GPIM|MAMDC3 MAM domain containing glycosylphosphatidylinositol anchor 1 protein-coding 13-PTNLD9-TUMOR_peak_45172 chr6 45557980 45558323 + 35.27983 NA Intergenic Intergenic 167837 NM_001278478 860 Hs.535845 NM_004348 HPRD:02566 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA runt-related transcription factor 2 protein-coding 13-PTNLD9-TUMOR_peak_17810 chr15 82951751 82952049 + 35.21395 NA intron (NR_102747, intron 1 of 5) LTR10G|LTR|ERV1 7150 NR_102747 727751 Hs.546614 NR_102747 LOC727751 - golgin A2 pseudogene pseudo 13-PTNLD9-TUMOR_peak_30867 chr20 33893555 33893860 + 35.20326 NA intron (NM_199487, intron 8 of 8) intron (NM_199487, intron 8 of 8) -13482 NM_178468 128876 Hs.592149 NM_178468 HPRD:12743 FAM83C C20orf128|dJ614O4.7 family with sequence similarity 83, member C protein-coding 13-PTNLD9-TUMOR_peak_9422 chr11 32158739 32159186 + 35.19830 NA Intergenic L2c|LINE|L2 46485 NM_002901 5954 Hs.97887 NM_002901 HPRD:04111 RCN1 HEL-S-84|PIG20|RCAL|RCN reticulocalbin 1, EF-hand calcium binding domain protein-coding 13-PTNLD9-TUMOR_peak_6471 chr10 11835914 11836279 + 35.19715 NA Intergenic Intergenic -29301 NM_153256 254427 Hs.435775 NM_153256 HPRD:10697 PROSER2 C10orf47 proline and serine rich 2 protein-coding 13-PTNLD9-TUMOR_peak_2022 chr1 62696349 62696768 + 35.17815 NA Intergenic MLT1M|LTR|ERVL-MaLR 36084 NM_019079 54596 Hs.685462 NM_019079 HPRD:07708 L1TD1 ECAT11 LINE-1 type transposase domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_52341 chr8 142164164 142164557 + 35.15900 NA intron (NM_014957, intron 7 of 22) intron (NM_014957, intron 7 of 22) 25640 NM_014957 22898 Hs.18166 NM_014957 HPRD:11114 DENND3 - DENN/MADD domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_19850 chr16 80061044 80061394 + 35.13562 NA Intergenic Intergenic 232073 NR_104661 101928248 Hs.659802 NR_104660 LOC101928248 - uncharacterized LOC101928248 ncRNA 13-PTNLD9-TUMOR_peak_2790 chr1 110350916 110351474 + 35.11653 NA Intergenic Intergenic -44551 NM_024526 79574 Hs.485352 NM_024526 HPRD:13277 EPS8L3 EPS8R3 EPS8-like 3 protein-coding 13-PTNLD9-TUMOR_peak_51925 chr8 126649676 126650010 + 35.11653 NA Intergenic Intergenic 205392 NM_001282985 10221 Hs.444947 NM_025195 HPRD:09863 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 13-PTNLD9-TUMOR_peak_33975 chr3 16490200 16490473 + 35.11240 NA intron (NM_015150, intron 2 of 9) intron (NM_015150, intron 2 of 9) 64886 NM_015150 23180 Hs.98910 NM_015150 HPRD:17950 RFTN1 PIB10|PIG9|RAFTLIN raftlin, lipid raft linker 1 protein-coding 13-PTNLD9-TUMOR_peak_41011 chr5 60600476 60600775 + 34.98351 NA Intergenic Intergenic -27475 NM_020928 57688 Hs.744939 NM_020928 ENSG00000130449 ZSWIM6 - zinc finger, SWIM-type containing 6 protein-coding 13-PTNLD9-TUMOR_peak_3314 chr1 145455313 145455767 + 34.97078 NA TTS (NM_032305) TTS (NM_032305) 14847 NM_032305 84265 Hs.591456 NM_032305 HPRD:14546 POLR3GL RPC32HOM|flj32422 polymerase (RNA) III (DNA directed) polypeptide G (32kD)-like protein-coding 13-PTNLD9-TUMOR_peak_52184 chr8 134657494 134657840 + 34.85143 NA Intergenic Intergenic -73484 NM_003033 6482 Hs.374257 NM_003033 HPRD:06219 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_4202 chr1 163005576 163005965 + 34.83778 NA Intergenic Intergenic -32626 NM_001102445 5999 Hs.386726 NM_005613 HPRD:03947 RGS4 RGP4|SCZD9 regulator of G-protein signaling 4 protein-coding 13-PTNLD9-TUMOR_peak_40143 chr5 458964 459295 + 34.79170 NA intron (NM_007277, intron 6 of 12) intron (NM_007277, intron 6 of 12) 13951 NR_024158 25845 Hs.719132 NR_024158 ENSG00000188242 PP7080 - uncharacterized LOC25845 ncRNA 13-PTNLD9-TUMOR_peak_45670 chr6 88018728 88019024 + 34.68231 NA intron (NM_198568, intron 2 of 2) MLT2F|LTR|ERVL -13430 NM_020425 57150 Hs.70769 NM_020425 HPRD:12862 SMIM8 C6orf162|dJ102H19.2 small integral membrane protein 8 protein-coding 13-PTNLD9-TUMOR_peak_37218 chr3 190261356 190261757 + 34.67322 NA intron (NM_001167929, intron 1 of 10) L2c|LINE|L2 29716 NM_001167931 3556 Hs.478673 NM_002182 HPRD:04021 IL1RAP C3orf13|IL-1RAcP|IL1R3 interleukin 1 receptor accessory protein protein-coding 13-PTNLD9-TUMOR_peak_45106 chr6 43766631 43766896 + 34.65688 NA Intergenic Intergenic 27041 NM_001287044 7422 Hs.73793 NM_003376 HPRD:01889 VEGFA MVCD1|VEGF|VPF vascular endothelial growth factor A protein-coding 13-PTNLD9-TUMOR_peak_26697 chr2 43063194 43063546 + 34.65688 NA Intergenic MLT1H2|LTR|ERVL-MaLR -43619 NM_012205 23498 Hs.368805 NM_012205 HPRD:05158 HAAO 3-HAO|HAO 3-hydroxyanthranilate 3,4-dioxygenase protein-coding 13-PTNLD9-TUMOR_peak_1404 chr1 42617789 42618152 + 34.64566 NA Intergenic Intergenic -1122 NM_007102 2981 Hs.32966 NM_007102 HPRD:03170 GUCA2B GCAP-II|UGN guanylate cyclase activator 2B (uroguanylin) protein-coding 13-PTNLD9-TUMOR_peak_40430 chr5 16856639 16856978 + 34.64449 NA intron (NM_012334, intron 2 of 40) intron (NM_012334, intron 2 of 40) 79577 NM_012334 4651 Hs.481720 NM_012334 HPRD:03283 MYO10 - myosin X protein-coding 13-PTNLD9-TUMOR_peak_5113 chr1 203661708 203662162 + 34.51081 NA intron (NM_001684, intron 2 of 20) intron (NM_001684, intron 2 of 20) -36774 NR_003019 677843 Hs.676135 NR_003019 SNORA77 ACA63 small nucleolar RNA, H/ACA box 77 snoRNA 13-PTNLD9-TUMOR_peak_30596 chr20 22756300 22756764 + 34.50794 NA Intergenic Intergenic -168377 NR_109883 101929685 Hs.563018 NR_109883 LINC01384 - long intergenic non-protein coding RNA 1384 ncRNA 13-PTNLD9-TUMOR_peak_48339 chr7 93930407 93930633 + 34.49052 NA Intergenic Intergenic -93353 NM_000089 1278 Hs.489142 NM_000089 HPRD:00363 COL1A2 OI4 collagen, type I, alpha 2 protein-coding 13-PTNLD9-TUMOR_peak_31021 chr20 37819362 37819590 + 34.42557 NA Intergenic Intergenic 33915 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LOC339568 - uncharacterized LOC339568 ncRNA 13-PTNLD9-TUMOR_peak_51853 chr8 125116258 125116712 + 34.42557 NA intron (NM_001039112, intron 39 of 40) L2c|LINE|L2 -63462 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_835 chr1 28189722 28190022 + 34.42031 NA Intergenic Intergenic -9182 NM_004848 9473 Hs.10649 NM_004848 HPRD:12728 THEMIS2 C1orf38|ICB-1 thymocyte selection associated family member 2 protein-coding 13-PTNLD9-TUMOR_peak_1380 chr1 42092733 42093013 + 34.34380 NA intron (NM_001127714, intron 2 of 7) intron (NM_001127714, intron 2 of 7) -142529 NM_001956 1907 Hs.1407 NM_001956 HPRD:07173 EDN2 ET2|PPET2 endothelin 2 protein-coding 13-PTNLD9-TUMOR_peak_53495 chr9 69774948 69775756 + 34.31985 NA Intergenic HERVL-int|LTR|ERVL -17568 NR_121570 101928381 Hs.708686 NR_121570 LOC101928381 - uncharacterized LOC101928381 ncRNA 13-PTNLD9-TUMOR_peak_9512 chr11 34586012 34586354 + 34.24618 NA Intergenic Intergenic -50836 NM_001243080 2001 Hs.11713 NM_001422 HPRD:05525 ELF5 ESE2 E74-like factor 5 (ets domain transcription factor) protein-coding 13-PTNLD9-TUMOR_peak_35841 chr3 128930631 128931035 + 34.19463 NA Intergenic Intergenic -28023 NM_003418 7555 Hs.518249 NM_003418 HPRD:00311 CNBP CNBP1|DM2|PROMM|RNF163|ZCCHC22|ZNF9 CCHC-type zinc finger, nucleic acid binding protein protein-coding 13-PTNLD9-TUMOR_peak_1479 chr1 43988788 43989104 + 34.15929 NA Intergenic L2c|LINE|L2 -7601 NM_002840 5792 Hs.272062 NM_002840 HPRD:01552 PTPRF LAR protein tyrosine phosphatase, receptor type, F protein-coding 13-PTNLD9-TUMOR_peak_52389 chr8 143757475 143757807 + 34.05724 NA intron (NR_033343, intron 1 of 2) intron (NR_033343, intron 1 of 2) -4233 NM_005672 8000 Hs.652235 NM_005672 HPRD:03919 PSCA PRO232 prostate stem cell antigen protein-coding 13-PTNLD9-TUMOR_peak_6803 chr10 29947872 29948447 + 34.04912 NA intron (NM_003174, intron 2 of 35) intron (NM_003174, intron 2 of 35) -24258 NM_021738 6840 Hs.499209 NM_003174 HPRD:04992 SVIL - supervillin protein-coding 13-PTNLD9-TUMOR_peak_48153 chr7 80571596 80571997 + 34.04912 NA Intergenic Intergenic -23129 NM_006379 10512 Hs.269109 NM_006379 HPRD:04034 SEMA3C SEMAE|SemE sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C protein-coding 13-PTNLD9-TUMOR_peak_49754 chr7 153474054 153474405 + 33.92919 NA Intergenic L1MC4|LINE|L1 -109953 NM_001039350 1804 Hs.490684 NM_001936 HPRD:00525 DPP6 DPPX|VF2 dipeptidyl-peptidase 6 protein-coding 13-PTNLD9-TUMOR_peak_36580 chr3 159572483 159572808 + 33.91314 NA intron (NM_001197109, intron 1 of 6) intron (NM_001197109, intron 1 of 6) 14995 NM_001197109 29970 Hs.134665 NM_014575 HPRD:15302 SCHIP1 SCHIP-1 schwannomin interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_7259 chr10 47749429 47749807 + 33.89355 NA intron (NM_001098845, intron 1 of 11) intron (NM_001098845, intron 1 of 11) 2768 NM_001098845 728113 Hs.705389 NM_001630 ENSG00000150165 ANXA8L1 ANXA8|ANXA8L2|VAC-beta|bA145E20.2 annexin A8-like 1 protein-coding 13-PTNLD9-TUMOR_peak_15475 chr14 32597574 32597864 + 33.86333 NA intron (NM_001030055, intron 3 of 6) intron (NM_001030055, intron 3 of 6) 51224 NM_001030055 394 Hs.592313 NM_001173 HPRD:04060 ARHGAP5 GFI2|RhoGAP5|p190-B|p190BRhoGAP Rho GTPase activating protein 5 protein-coding 13-PTNLD9-TUMOR_peak_26444 chr2 28856696 28856937 + 33.84858 NA intron (NM_001170585, intron 55 of 56) intron (NM_001170585, intron 55 of 56) -117798 NM_206876 5500 Hs.702907 NM_002709 HPRD:11792 PPP1CB HEL-S-80p|PP-1B|PP1B|PP1beta|PPP1CD protein phosphatase 1, catalytic subunit, beta isozyme protein-coding 13-PTNLD9-TUMOR_peak_2998 chr1 116883508 116883761 + 33.84858 NA Intergenic L3|LINE|CR1 -32161 NM_000701 476 Hs.371889 NM_000701 HPRD:01662 ATP1A1 - ATPase, Na+/K+ transporting, alpha 1 polypeptide protein-coding 13-PTNLD9-TUMOR_peak_43408 chr6 1190599 1190938 + 33.83062 NA Intergenic Intergenic -89201 NR_027115 285768 Hs.209463 NR_027115 LOC285768 - uncharacterized LOC285768 ncRNA 13-PTNLD9-TUMOR_peak_36242 chr3 142695483 142695747 + 33.78857 NA intron (NR_125393, intron 2 of 4) intron (NR_125393, intron 2 of 4) 12715 NR_125393 101927832 Hs.710007 NR_125393 PAQR9-AS1 - PAQR9 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_2367 chr1 87692031 87692404 + 33.77847 NA intron (NM_001290053, intron 2 of 3) intron (NM_001290053, intron 2 of 3) 13865 NM_001290053 101927844 Hs.694591 NM_001290053 LOC101927844 - uncharacterized LOC101927844 protein-coding 13-PTNLD9-TUMOR_peak_21492 chr17 48970772 48971284 + 33.76607 NA Intergenic Intergenic -25689 NM_001243877 10140 Hs.703321 NM_005749 HPRD:09273 TOB1 APRO6|PIG49|TOB|TROB|TROB1 transducer of ERBB2, 1 protein-coding 13-PTNLD9-TUMOR_peak_6728 chr10 25351367 25351705 + 33.72555 NA promoter-TSS (NM_001270383) promoter-TSS (NM_001270383) -328 NM_001270383 219670 Hs.534486 NM_145010 HPRD:12583 ENKUR C10orf63|CFAP106 enkurin, TRPC channel interacting protein protein-coding 13-PTNLD9-TUMOR_peak_53517 chr9 70141571 70142337 + 33.70739 NA Intergenic HERVL-int|LTR|ERVL 36861 NM_001126334 653427 Hs.714683 NM_001126334 ENSG00000204779 FOXD4L5 bA15J10.2 forkhead box D4-like 5 protein-coding 13-PTNLD9-TUMOR_peak_30893 chr20 34471695 34472407 + 33.70738 NA intron (NM_016436, intron 9 of 17) intron (NM_016436, intron 9 of 17) 70497 NM_033630 51282 Hs.584909 NM_016558 SCAND1 RAZ1|SDP1 SCAN domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_26491 chr2 30516242 30516650 + 33.69933 NA Intergenic Intergenic -53066 NR_122048 285043 Hs.429119 NR_122048 LOC285043 - uncharacterized LOC285043 ncRNA 13-PTNLD9-TUMOR_peak_11482 chr11 123143383 123143579 + 33.64581 NA Intergenic L2a|LINE|L2 -77474 NM_024769 79827 Hs.591949 NM_024769 HPRD:16513 CLMP ACAM|ASAM|CSBM|CSBS CXADR-like membrane protein protein-coding 13-PTNLD9-TUMOR_peak_1446 chr1 43672438 43672826 + 33.63739 NA intron (NM_152498, intron 10 of 10) intron (NM_152498, intron 10 of 10) -34391 NM_001159936 10969 Hs.346868 NM_006824 HPRD:16849 EBNA1BP2 EBP2|NOBP|P40 EBNA1 binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_28321 chr2 122547940 122548170 + 33.63730 NA Intergenic Intergenic 34934 NR_048557 7247 Hs.75066 NM_004622 HPRD:08993 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 13-PTNLD9-TUMOR_peak_49766 chr7 153875987 153876307 + 33.62120 NA intron (NM_001290253, intron 1 of 5) MamGypLTR1a|LTR|Gypsy -126150 NM_001936 1804 Hs.490684 NM_001936 HPRD:00525 DPP6 DPPX|VF2 dipeptidyl-peptidase 6 protein-coding 13-PTNLD9-TUMOR_peak_5167 chr1 204677719 204677940 + 33.58621 NA Intergenic Intergenic -23232 NM_201630 10446 Hs.26312 NM_006338 HPRD:16109 LRRN2 FIGLER7|GAC1|LRANK1|LRRN5 leucine rich repeat neuronal 2 protein-coding 13-PTNLD9-TUMOR_peak_49799 chr7 155377983 155378199 + 33.54317 NA Intergenic Intergenic -51552 NM_001103176 285888 Hs.146751 NM_001103176 ENSG00000146910 CNPY1 - canopy FGF signaling regulator 1 protein-coding 13-PTNLD9-TUMOR_peak_15107 chr13 110714820 110715210 + 33.53083 NA Intergenic Intergenic 244481 NM_001845 1282 Hs.17441 NM_001845 HPRD:00359 COL4A1 HANAC|ICH|POREN1|arresten collagen, type IV, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_5885 chr1 234321791 234322064 + 33.47823 NA intron (NM_173508, intron 2 of 7) intron (NM_173508, intron 2 of 7) -28030 NM_001300845 148641 Hs.158748 NM_173508 HPRD:15378 SLC35F3 - solute carrier family 35, member F3 protein-coding 13-PTNLD9-TUMOR_peak_16896 chr15 30213323 30213600 + 33.45853 NA intron (NM_001301025, intron 2 of 28) L2|LINE|L2 47541 NM_001301025 7082 Hs.743990 NM_003257 HPRD:03002 TJP1 ZO-1 tight junction protein 1 protein-coding 13-PTNLD9-TUMOR_peak_46999 chr7 20392514 20392868 + 33.42084 NA intron (NM_002214, intron 1 of 13) intron (NM_002214, intron 1 of 13) -21306 NR_110119 101927811 Hs.285724 NR_110119 ENSG00000271133 LOC101927811 - uncharacterized LOC101927811 ncRNA 13-PTNLD9-TUMOR_peak_45234 chr6 47210303 47210508 + 33.39275 NA intron (NM_014452, intron 4 of 5) intron (NM_014452, intron 4 of 5) 67278 NM_014452 27242 Hs.443577 NM_014452 HPRD:05759 TNFRSF21 BM-018|CD358|DR6 tumor necrosis factor receptor superfamily, member 21 protein-coding 13-PTNLD9-TUMOR_peak_13330 chr12 71950728 71951042 + 33.39275 NA intron (NR_110596, intron 6 of 19) intron (NR_110596, intron 6 of 19) -106792 NM_031435 83591 Hs.245798 NM_031435 HPRD:10896 THAP2 - THAP domain containing, apoptosis associated protein 2 protein-coding 13-PTNLD9-TUMOR_peak_49311 chr7 138557439 138557690 + 33.39056 NA intron (NM_001164665, intron 12 of 19) AluJb|SINE|Alu -74623 NM_130840 50617 Hs.98967 NM_020632 HPRD:05576 ATP6V0A4 A4|ATP6N1B|ATP6N2|RDRTA2|RTA1C|RTADR|STV1|VPH1|VPP2 ATPase, H+ transporting, lysosomal V0 subunit a4 protein-coding 13-PTNLD9-TUMOR_peak_54694 chr9 124878342 124878692 + 33.35183 NA Intergenic Intergenic 3929 NR_039690 100616312 NR_039690 miRBase:MI0016831 MIR4478 - microRNA 4478 ncRNA 13-PTNLD9-TUMOR_peak_49547 chr7 148347515 148347891 + 33.27937 NA Intergenic MIR3|SINE|MIR -48230 NM_003592 8454 Hs.146806 NM_003592 HPRD:04389 CUL1 - cullin 1 protein-coding 13-PTNLD9-TUMOR_peak_7239 chr10 47171217 47171707 + 33.27299 NA intron (NM_001271702, intron 1 of 11).2 intron (NM_001271702, intron 1 of 11).2 2681 NM_001271703 653145 Hs.535306 NM_001040084 ENSG00000165390 ANXA8 ANX8 annexin A8 protein-coding 13-PTNLD9-TUMOR_peak_23032 chr18 43219463 43219661 + 33.23654 NA intron (NM_007163, intron 6 of 19) intron (NM_007163, intron 6 of 19) 24796 NM_007163 8170 Hs.710927 NM_007163 HPRD:03366 SLC14A2 HUT2|UT-A2|UT2|UTA|UTR|hUT-A6 solute carrier family 14 (urea transporter), member 2 protein-coding 13-PTNLD9-TUMOR_peak_43816 chr6 12324406 12324698 + 33.21998 NA Intergenic Intergenic 34023 NM_001955 1906 Hs.511899 NM_001955 HPRD:07030 EDN1 ARCND3|ET1|HDLCQ7|PPET1|QME endothelin 1 protein-coding 13-PTNLD9-TUMOR_peak_53867 chr9 89381840 89382167 + 33.21491 NA Intergenic Intergenic 180101 NM_002048 2619 Hs.65029 NM_002048 HPRD:00747 GAS1 - growth arrest-specific 1 protein-coding 13-PTNLD9-TUMOR_peak_53524 chr9 70392050 70392815 + 33.21360 NA Intergenic HERVL-int|LTR|ERVL -17508 NR_121570 101928381 Hs.708686 NR_121570 LOC101928381 - uncharacterized LOC101928381 ncRNA 13-PTNLD9-TUMOR_peak_31584 chr20 52543192 52543454 + 33.16027 NA Intergenic Intergenic -51075 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_5110 chr1 203632434 203632792 + 33.16016 NA intron (NM_001684, intron 1 of 20) intron (NM_001684, intron 1 of 20) 36698 NM_001684 493 Hs.343522 NM_001684 HPRD:00159 ATP2B4 ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x ATPase, Ca++ transporting, plasma membrane 4 protein-coding 13-PTNLD9-TUMOR_peak_33799 chr3 12586872 12587143 + 33.15416 NA promoter-TSS (NM_001195279) promoter-TSS (NM_001195279) -44 NM_001195279 100129480 Hs.572974 NM_001195279 MKRN2OS C3orf83|MKRN2-AS1 MKRN2 opposite strand protein-coding 13-PTNLD9-TUMOR_peak_11463 chr11 122568393 122568595 + 33.15416 NA intron (NM_032873, intron 1 of 13) intron (NM_032873, intron 1 of 13) 42096 NM_032873 84959 Hs.444075 NM_032873 HPRD:16463 UBASH3B STS-1|STS1|TULA-2|p70 ubiquitin associated and SH3 domain containing B protein-coding 13-PTNLD9-TUMOR_peak_6892 chr10 33269421 33269827 + 33.13460 NA Intergenic CpG -22331 NM_002211 3688 Hs.643813 NM_002211 HPRD:00628 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) protein-coding 13-PTNLD9-TUMOR_peak_42793 chr5 157297868 157298221 + 33.08441 NA Intergenic MER44D|DNA|TcMar-Tigger -11861 NM_001195556 9685 Hs.644000 NM_014666 HPRD:06273 CLINT1 CLINT|ENTH|EPN4|EPNR clathrin interactor 1 protein-coding 13-PTNLD9-TUMOR_peak_42442 chr5 142556841 142557189 + 33.08293 NA intron (NM_015071, intron 20 of 22) intron (NM_015071, intron 20 of 22) 226239 NM_000176 2908 Hs.122926 NM_000176 HPRD:00679 NR3C1 GCCR|GCR|GR|GRL nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) protein-coding 13-PTNLD9-TUMOR_peak_51444 chr8 102290266 102290561 + 33.08293 NA Intergenic Intergenic -72121 NM_001267709 51123 Hs.374485 NM_016096 HPRD:13688 ZNF706 PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 13-PTNLD9-TUMOR_peak_35818 chr3 128343621 128343877 + 33.07898 NA intron (NM_002950, intron 8 of 9) intron (NM_002950, intron 8 of 9) 25970 NM_002950 6184 Hs.518244 NM_002950 HPRD:01598 RPN1 OST1|RBPH1 ribophorin I protein-coding 13-PTNLD9-TUMOR_peak_1394 chr1 42328587 42328877 + 33.07022 NA intron (NR_038260, intron 1 of 2) intron (NR_038260, intron 1 of 2) 55646 NM_024503 59269 Hs.403972 NM_024503 HPRD:09442 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 13-PTNLD9-TUMOR_peak_40185 chr5 1327763 1328336 + 33.06287 NA intron (NM_030782, intron 9 of 16) intron (NM_030782, intron 9 of 16) 16953 NM_030782 81037 Hs.444673 NM_030782 HPRD:07480 CLPTM1L CRR9 CLPTM1-like protein-coding 13-PTNLD9-TUMOR_peak_30809 chr20 32321681 32321955 + 32.98450 NA intron (NR_104259, intron 1 of 13) intron (NR_104259, intron 1 of 13) 2252 NM_001282935 84905 Hs.516989 NM_032819 HPRD:15781 ZNF341 - zinc finger protein 341 protein-coding 13-PTNLD9-TUMOR_peak_36733 chr3 171847781 171848105 + 32.97963 NA intron (NM_001135095, intron 2 of 25) intron (NM_001135095, intron 2 of 25) 89599 NM_001135095 64778 Hs.744888 NM_022763 HPRD:10943 FNDC3B FAD104|PRO4979|YVTM2421 fibronectin type III domain containing 3B protein-coding 13-PTNLD9-TUMOR_peak_10421 chr11 68776279 68776554 + 32.94239 NA intron (NM_145015, intron 2 of 2) intron (NM_145015, intron 2 of 2) -3406 NR_120541 101928200 Hs.703759 NR_120541 ENSG00000256508 MRGPRF-AS1 - MRGPRF antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_45511 chr6 74322350 74322666 + 32.90572 NA intron (NM_012434, intron 8 of 10) AluJb|SINE|Alu 41229 NM_012434 26503 Hs.597422 NM_012434 HPRD:05058 SLC17A5 AST|ISSD|NSD|SD|SIALIN|SIASD|SLD solute carrier family 17 (acidic sugar transporter), member 5 protein-coding 13-PTNLD9-TUMOR_peak_54685 chr9 124734716 124735217 + 32.80809 NA intron (NM_001139442, intron 6 of 8) MER5B|DNA|hAT-Charlie 120919 NM_001139442 158135 Hs.438937 NM_194252 HPRD:10047 TTLL11 C9orf20|bA244O19.1 tubulin tyrosine ligase-like family, member 11 protein-coding 13-PTNLD9-TUMOR_peak_29590 chr2 204205603 204205971 + 32.80075 NA intron (NM_001282932, intron 1 of 9) L2a|LINE|L2 12825 NM_001282932 10152 Hs.471156 NM_005759 ENSG00000138443 ABI2 ABI-2|ABI2B|AIP-1|AblBP3|SSH3BP2|argBP1|argBPIA|argBPIB abl-interactor 2 protein-coding 13-PTNLD9-TUMOR_peak_11310 chr11 116237642 116238042 + 32.79733 NA Intergenic Intergenic 405872 NM_032725 84811 Hs.437341 NM_032725 HPRD:11307 BUD13 Cwc26|fSAP71 BUD13 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_19024 chr16 30752866 30753298 + 32.79353 NA exon (NM_001256829, exon 2 of 3) exon (NM_001256829, exon 2 of 3) 1570 NM_001256829 100862671 Hs.667372 NM_001256829 LOC100862671 - uncharacterized LOC100862671 protein-coding 13-PTNLD9-TUMOR_peak_15467 chr14 32407011 32407327 + 32.77088 NA Intergenic Intergenic 138736 NR_027263 84837 Hs.496755 NM_032751 ENSG00000258655 ARHGAP5-AS1 C14orf128 ARHGAP5 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_28951 chr2 164631465 164631700 + 32.76566 NA Intergenic Intergenic -39069 NM_018086 55137 Hs.593650 NM_018086 FIGN - fidgetin protein-coding 13-PTNLD9-TUMOR_peak_45176 chr6 45623654 45623941 + 32.71079 NA Intergenic Intergenic 233483 NM_001278478 860 Hs.535845 NM_004348 HPRD:02566 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA runt-related transcription factor 2 protein-coding 13-PTNLD9-TUMOR_peak_13079 chr12 59449335 59449544 + 32.69586 NA Intergenic Intergenic -135120 NM_153377 121227 Hs.253736 NM_153377 HPRD:08317 LRIG3 LIG3 leucine-rich repeats and immunoglobulin-like domains 3 protein-coding 13-PTNLD9-TUMOR_peak_13122 chr12 63156512 63156794 + 32.68797 NA intron (NM_020700, intron 4 of 9) intron (NM_020700, intron 4 of 9) 159187 NR_029661 406891 NR_029661 miRBase:MI0000434 MIRLET7I LET7I|MIRNLET7I|hsa-let-7i microRNA let-7i ncRNA 13-PTNLD9-TUMOR_peak_51691 chr8 118843783 118844002 + 32.68797 NA intron (NM_000127, intron 3 of 10) intron (NM_000127, intron 3 of 10) 280166 NM_000127 2131 Hs.492618 NM_000127 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_4736 chr1 184181891 184182351 + 32.67727 NA Intergenic Intergenic 161336 NR_125335 116461 Hs.548197 NM_052965 HPRD:12292 TSEN15 C1orf19|sen15 TSEN15 tRNA splicing endonuclease subunit protein-coding 13-PTNLD9-TUMOR_peak_37163 chr3 188884882 188885164 + 32.67727 NA Intergenic Intergenic -4740 NM_198485 285386 Hs.729544 NM_198485 HPRD:13451 TPRG1 FAM79B tumor protein p63 regulated 1 protein-coding 13-PTNLD9-TUMOR_peak_2707 chr1 108073228 108073509 + 32.63680 NA Intergenic Intergenic 157758 NM_001079874 10451 Hs.267659 NM_006113 HPRD:05706 VAV3 - vav 3 guanine nucleotide exchange factor protein-coding 13-PTNLD9-TUMOR_peak_36498 chr3 156505914 156506325 + 32.60287 NA intron (NR_038387, intron 1 of 2) intron (NR_038387, intron 1 of 2) 23691 NR_003284 647033 Hs.745109 NR_003284 PA2G4P4 PA2G4L1 proliferation-associated 2G4 pseudogene 4 pseudo 13-PTNLD9-TUMOR_peak_1600 chr1 46268500 46268721 + 32.57972 NA promoter-TSS (NM_015112) promoter-TSS (NM_015112) -675 NM_015112 23139 Hs.319481 NM_015112 HPRD:11294 MAST2 MAST205|MTSSK microtubule associated serine/threonine kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_5922 chr1 234820037 234820218 + 32.53382 NA Intergenic MIRb|SINE|MIR -39662 NR_038856 100506810 Hs.586634 NR_038856 ENSG00000227630 LINC01132 - long intergenic non-protein coding RNA 1132 ncRNA 13-PTNLD9-TUMOR_peak_32377 chr21 42514033 42514362 + 32.49217 NA non-coding (NR_024100, exon 2 of 2) non-coding (NR_024100, exon 2 of 2) 5794 NR_024100 284835 Hs.106234 NR_024100 ENSG00000226496 LINC00323 C21orf130|NCRNA00323|PRED42 long intergenic non-protein coding RNA 323 ncRNA 13-PTNLD9-TUMOR_peak_26504 chr2 31202865 31203167 + 32.48226 NA intron (NM_001253826, intron 3 of 15) intron (NM_001253826, intron 3 of 15) 149490 NM_001253827 79623 Hs.468058 NM_024572 HPRD:12194 GALNT14 GALNT15|GalNac-T10|GalNac-T14 polypeptide N-acetylgalactosaminyltransferase 14 protein-coding 13-PTNLD9-TUMOR_peak_3117 chr1 120865401 120865758 + 32.46321 NA Intergenic Intergenic 26574 NM_001100910 653820 Hs.339665 NM_001100910 ENSG00000188610 FAM72B p17 family with sequence similarity 72, member B protein-coding 13-PTNLD9-TUMOR_peak_4724 chr1 183885146 183885503 + 32.45691 NA intron (NM_001297671, intron 15 of 17) intron (NM_001297671, intron 15 of 17) 111109 NM_001297672 23179 Hs.497148 NM_015149 HPRD:12032 RGL1 RGL ral guanine nucleotide dissociation stimulator-like 1 protein-coding 13-PTNLD9-TUMOR_peak_3536 chr1 149989388 149989651 + 32.45153 NA Intergenic Intergenic -6833 NM_020205 56957 Hs.98322 NM_020205 OTUD7B CEZANNE|ZA20D1 OTU deubiquitinase 7B protein-coding 13-PTNLD9-TUMOR_peak_11299 chr11 115421108 115421408 + 32.40017 NA Intergenic Intergenic -46017 NM_001301043 23705 Hs.370510 NM_014333 HPRD:05746 CADM1 BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 cell adhesion molecule 1 protein-coding 13-PTNLD9-TUMOR_peak_44164 chr6 25017809 25018454 + 32.37619 NA intron (NM_001286446, intron 1 of 13) intron (NM_001286446, intron 1 of 13) 24265 NM_001286446 9750 Hs.559459 NM_014722 HPRD:12881 FAM65B C6orf32|DIFF40|DIFF48|MYONAP|PL48 family with sequence similarity 65, member B protein-coding 13-PTNLD9-TUMOR_peak_42586 chr5 148985556 148985870 + 32.36629 NA intron (NM_001001669, intron 3 of 12) intron (NM_001001669, intron 3 of 12) 24578 NM_001001669 389337 Hs.256206 NM_001001669 HPRD:13454 ARHGEF37 - Rho guanine nucleotide exchange factor (GEF) 37 protein-coding 13-PTNLD9-TUMOR_peak_53154 chr9 36218552 36218960 + 32.36221 NA intron (NM_001128227, intron 10 of 11) MIRb|SINE|MIR 27903 NM_007096 1211 Hs.522114 NM_001833 HPRD:00351 CLTA LCA clathrin, light chain A protein-coding 13-PTNLD9-TUMOR_peak_14205 chr12 124721253 124721542 + 32.30740 NA intron (NM_001204299, intron 3 of 4) intron (NM_001204299, intron 3 of 4) -52313 NM_181709 144347 Hs.432901 NM_181709 HPRD:14066 FAM101A CFM2 family with sequence similarity 101, member A protein-coding 13-PTNLD9-TUMOR_peak_26340 chr2 25599789 25599982 + 32.28043 NA TTS (NM_033148) TTS (NM_033148) -34426 NM_175630 1788 Hs.515840 NM_022552 HPRD:04141 DNMT3A DNMT3A2|M.HsaIIIA|TBRS DNA (cytosine-5-)-methyltransferase 3 alpha protein-coding 13-PTNLD9-TUMOR_peak_54321 chr9 109165428 109165680 + 32.27284 NA Intergenic MLT2F|LTR|ERVL -197655 NR_107048 102465995 NR_107048 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 13-PTNLD9-TUMOR_peak_1273 chr1 40265409 40265843 + 32.22927 NA Intergenic MIR|SINE|MIR -11093 NM_001720 656 Hs.734367 NM_001720 BMP8B BMP8|OP2 bone morphogenetic protein 8b protein-coding 13-PTNLD9-TUMOR_peak_35511 chr3 119896075 119896312 + 32.19599 NA intron (NM_153002, intron 7 of 8) intron (NM_153002, intron 7 of 8) 66949 NM_001168271 165829 Hs.333358 NM_153002 HPRD:17067 GPR156 GABABL|PGR28 G protein-coupled receptor 156 protein-coding 13-PTNLD9-TUMOR_peak_39948 chr4 184039846 184040134 + 32.16868 NA intron (NM_024949, intron 1 of 22) intron (NM_024949, intron 1 of 22) 19527 NM_024949 80014 Hs.333179 NM_024949 HPRD:12529 WWC2 BOMB WW and C2 domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_3461 chr1 148928063 148928480 + 32.16766 NA promoter-TSS (NR_027355) promoter-TSS (NR_027355) -42 NR_027356 645166 Hs.744183 NR_027354 ENSG00000232527 LOC645166 - lymphocyte-specific protein 1 pseudogene pseudo 13-PTNLD9-TUMOR_peak_26442 chr2 28836943 28837272 + 32.15696 NA intron (NM_001170585, intron 43 of 56) intron (NM_001170585, intron 43 of 56) 118169 NM_153021 151056 Hs.444933 NM_153021 HPRD:15141 PLB1 PLB|PLB/LIP|hPLB phospholipase B1 protein-coding 13-PTNLD9-TUMOR_peak_4447 chr1 173683974 173684498 + 32.14894 NA intron (NM_014458, intron 1 of 11) CpG 156 NM_014458 27252 Hs.495035 NM_014458 HPRD:13918 KLHL20 KHLHX|KLEIP|KLHLX kelch-like family member 20 protein-coding 13-PTNLD9-TUMOR_peak_7401 chr10 54147491 54147866 + 32.12881 NA Intergenic L2b|LINE|L2 67354 NR_120642 101928687 Hs.380362 NR_120641 ENSG00000231131 LINC01468 lnc-MBL2-4 long intergenic non-protein coding RNA 1468 ncRNA 13-PTNLD9-TUMOR_peak_21374 chr17 46993249 46993571 + 32.11561 NA intron (NM_023079, intron 3 of 6) intron (NM_023079, intron 3 of 6) 7679 NM_023079 65264 Hs.514297 NM_023079 HPRD:08589 UBE2Z USE1 ubiquitin-conjugating enzyme E2Z protein-coding 13-PTNLD9-TUMOR_peak_234 chr1 7461908 7462299 + 32.11170 NA intron (NM_015215, intron 5 of 22) intron (NM_015215, intron 5 of 22) -369226 NM_004781 9341 Hs.66708 NM_004781 HPRD:04711 VAMP3 CEB vesicle-associated membrane protein 3 protein-coding 13-PTNLD9-TUMOR_peak_49677 chr7 151297046 151297276 + 32.10041 NA intron (NM_001040633, intron 5 of 15) MIR|SINE|MIR 32183 NM_024429 51422 Hs.647072 NM_016203 HPRD:04119 PRKAG2 AAKG|AAKG2|CMH6|H91620p|WPWS protein kinase, AMP-activated, gamma 2 non-catalytic subunit protein-coding 13-PTNLD9-TUMOR_peak_25879 chr1_gl000192_random 183210 183595 + 32.08630 NA intron (NR_103556, intron 33 of 45) L2|LINE|L2 224108 NR_103556 100288805 Hs.648712 NR_049745 HYDIN2 HYDINP1 HYDIN2, axonemal central pair apparatus protein (pseudogene) pseudo 13-PTNLD9-TUMOR_peak_17891 chr15 85770738 85771046 + 32.07985 NA Intergenic LTR10G|LTR|ERV1 -22374 NR_049748 642423 Hs.681665 NR_049748 LOC642423 - golgin A2 pseudogene pseudo 13-PTNLD9-TUMOR_peak_34409 chr3 45209058 45209347 + 32.03865 NA Intergenic LTR33|LTR|ERVL -21288 NM_178181 64866 Hs.476093 NM_022842 HPRD:16696 CDCP1 CD318|SIMA135|TRASK CUB domain containing protein 1 protein-coding 13-PTNLD9-TUMOR_peak_51758 chr8 120994972 120995302 + 32.02780 NA intron (NM_001283012, intron 2 of 6) MLT1J|LTR|ERVL-MaLR 109242 NM_022783 64798 Hs.112981 NM_022783 HPRD:13137 DEPTOR DEP.6|DEPDC6 DEP domain containing MTOR-interacting protein protein-coding 13-PTNLD9-TUMOR_peak_35345 chr3 111623557 111623944 + 32.02312 NA intron (NM_001134437, intron 3 of 17) intron (NM_001134437, intron 3 of 17) 45182 NM_001134439 90102 Hs.603252 NM_145753 HPRD:06611 PHLDB2 LL5b|LL5beta pleckstrin homology-like domain, family B, member 2 protein-coding 13-PTNLD9-TUMOR_peak_15349 chr14 24299369 24299576 + 32.02025 NA Intergenic L2c|LINE|L2 -123472 NM_001282988 10901 Hs.528385 NM_021004 HPRD:07484 DHRS4 CR|NRDR|PHCR|PSCD|SCAD-SRL|SDR-SRL|SDR25C1|SDR25C2 dehydrogenase/reductase (SDR family) member 4 protein-coding 13-PTNLD9-TUMOR_peak_45302 chr6 52720992 52721321 + 32.00579 NA Intergenic L1PA7|LINE|L1 -10263 NM_153699 221357 Hs.646984 NM_153699 HPRD:09620 GSTA5 - glutathione S-transferase alpha 5 protein-coding 13-PTNLD9-TUMOR_peak_27448 chr2 85890011 85890261 + 31.99418 NA intron (NM_000542, intron 9 of 11) intron (NM_000542, intron 9 of 11) 5728 NM_000542 6439 Hs.512690 NM_000542 HPRD:01523 SFTPB PSP-B|SFTB3|SFTP3|SMDP1|SP-B surfactant protein B protein-coding 13-PTNLD9-TUMOR_peak_6941 chr10 35661256 35661630 + 31.99418 NA intron (NM_001282852, intron 1 of 8) intron (NM_001282852, intron 1 of 8) 35641 NM_001282853 219771 Hs.14745 NM_145012 HPRD:10700 CCNY C10orf9|CBCP1|CCNX|CFP1 cyclin Y protein-coding 13-PTNLD9-TUMOR_peak_37990 chr4 10613359 10613578 + 31.96466 NA intron (NM_052964, intron 2 of 18) intron (NM_052964, intron 2 of 18) 72918 NM_052964 116449 Hs.678910 NM_052964 CLNK MIST cytokine-dependent hematopoietic cell linker protein-coding 13-PTNLD9-TUMOR_peak_19706 chr16 70916221 70916514 + 31.95968 NA intron (NM_001270974, intron 60 of 85) intron (NM_001270974, intron 60 of 85) -81306 NM_018052 55697 Hs.445061 NM_018052 HPRD:07660 VAC14 ArPIKfyve|TAX1BP2|TRX Vac14 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_30900 chr20 34673737 34674021 + 31.95968 NA Intergenic Intergenic -5547 NM_001258331 2036 Hs.437422 NM_012156 HPRD:04193 EPB41L1 4.1N|MRD11 erythrocyte membrane protein band 4.1-like 1 protein-coding 13-PTNLD9-TUMOR_peak_5148 chr1 204407758 204408088 + 31.91279 NA intron (NM_002646, intron 24 of 33) intron (NM_002646, intron 24 of 33) -26978 NM_032833 84919 Hs.304376 NM_032833 HPRD:17892 PPP1R15B CREP protein phosphatase 1, regulatory subunit 15B protein-coding 13-PTNLD9-TUMOR_peak_11652 chr11 130036414 130036646 + 31.90480 NA intron (NM_021978, intron 1 of 18) intron (NM_021978, intron 1 of 18) 6848 NM_021978 6768 Hs.504315 NM_021978 HPRD:06005 ST14 ARCI11|HAI|MT-SP1|MTSP1|PRSS14|SNC19|TADG15|TMPRSS14 suppression of tumorigenicity 14 (colon carcinoma) protein-coding 13-PTNLD9-TUMOR_peak_53107 chr9 35367548 35367786 + 31.88613 NA intron (NM_006377, intron 11 of 38) intron (NM_006377, intron 11 of 38) -39085 NR_003582 158381 Hs.575661 NR_003581 HPRD:18739 ATP8B5P FetA ATPase, class I, type 8B, member 5, pseudogene pseudo 13-PTNLD9-TUMOR_peak_23463 chr18 72518777 72518985 + 31.86208 NA intron (NM_017757, intron 3 of 7) L2a|LINE|L2 175962 NM_001146189 55628 Hs.536490 NM_017757 HPRD:11713 ZNF407 - zinc finger protein 407 protein-coding 13-PTNLD9-TUMOR_peak_41992 chr5 130109544 130109770 + 31.86121 NA Intergenic Intergenic 391384 NR_073488 3094 Hs.483305 NM_005340 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_40634 chr5 37272670 37272982 + 31.86096 NA Intergenic LTR40c|LTR|ERVL -23296 NM_023073 65250 Hs.586199 NM_023073 HPRD:07822 C5orf42 JBTS17 chromosome 5 open reading frame 42 protein-coding 13-PTNLD9-TUMOR_peak_40956 chr5 57119969 57120156 + 31.77848 NA Intergenic Intergenic 74927 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LOC101928539 - uncharacterized LOC101928539 ncRNA 13-PTNLD9-TUMOR_peak_39943 chr4 183850477 183850811 + 31.77342 NA Intergenic Intergenic -12014 NM_001012732 1635 Hs.183850 NM_001921 HPRD:09623 DCTD - dCMP deaminase protein-coding 13-PTNLD9-TUMOR_peak_36978 chr3 184063487 184063884 + 31.75660 NA TTS (NM_004366) TTS (NM_004366) 8409 NM_144635 131408 Hs.591307 NM_144635 HPRD:14481 FAM131A C3orf40|FLAT715|PRO1378 family with sequence similarity 131, member A protein-coding 13-PTNLD9-TUMOR_peak_36122 chr3 139021137 139021421 + 31.71544 NA Intergenic Intergenic -41582 NM_020191 56945 Hs.745001 NM_020191 HPRD:10430 MRPS22 C3orf5|COXPD5|GIBT|MRP-S22|RPMS22 mitochondrial ribosomal protein S22 protein-coding 13-PTNLD9-TUMOR_peak_38718 chr4 82553086 82553564 + 31.68226 NA Intergenic Intergenic -160243 NM_001300736 153020 Hs.591696 NM_152545 HPRD:17955 RASGEF1B GPIG4 RasGEF domain family, member 1B protein-coding 13-PTNLD9-TUMOR_peak_1341 chr1 41469389 41469626 + 31.67880 NA intron (NM_001905, intron 12 of 18) MLT1H2|LTR|ERVL-MaLR -10755 NR_037868 100507178 Hs.660056 NR_037868 SLFNL1-AS1 - SLFNL1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_51891 chr8 126272333 126272662 + 31.66035 NA intron (NM_173685, intron 5 of 7) intron (NM_173685, intron 5 of 7) 168414 NM_173685 286053 Hs.388297 NM_173685 HPRD:08131 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 non-SMC element 2, MMS21 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_37750 chr4 5760606 5760837 + 31.66035 NA intron (NM_153717, intron 11 of 20) LTR43|LTR|ERV1 47797 NM_153717 2121 Hs.646899 NM_014556 HPRD:05319 EVC DWF-1|EVC1|EVCL Ellis van Creveld syndrome protein-coding 13-PTNLD9-TUMOR_peak_5841 chr1 232674064 232674289 + 31.64271 NA Intergenic Intergenic -22933 NM_020808 57568 Hs.745009 NM_020808 HPRD:15346 SIPA1L2 SPAL2 signal-induced proliferation-associated 1 like 2 protein-coding 13-PTNLD9-TUMOR_peak_48103 chr7 77304323 77304503 + 31.63862 NA Intergenic FRAM|SINE|Alu -21330 NM_198467 222194 Hs.72451 NM_198467 RSBN1L - round spermatid basic protein 1-like protein-coding 13-PTNLD9-TUMOR_peak_6476 chr10 11924037 11924375 + 31.63013 NA intron (NR_038222, intron 2 of 5) intron (NR_038222, intron 2 of 5) 12503 NR_038222 219731 Hs.576787 NR_038222 ENSG00000225778 PROSER2-AS1 - PROSER2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_31176 chr20 43965216 43965616 + 31.60004 NA intron (NM_002999, intron 1 of 4) intron (NM_002999, intron 1 of 4) 11648 NM_002999 6385 Hs.632267 NM_002999 HPRD:08366 SDC4 SYND4 syndecan 4 protein-coding 13-PTNLD9-TUMOR_peak_2946 chr1 115599079 115599414 + 31.56171 NA intron (NM_005725, intron 6 of 7) L2c|LINE|L2 22679 NM_001277991 7252 Hs.406687 NM_000549 HPRD:11766 TSHB TSH-B|TSH-BETA thyroid stimulating hormone, beta protein-coding 13-PTNLD9-TUMOR_peak_32496 chr21 44930611 44930911 + 31.54980 NA Intergenic Intergenic -32658 NR_026863 114038 Hs.592161 NM_153752 HPRD:10770 LINC00313 C21orf84|NCRNA00313 long intergenic non-protein coding RNA 313 ncRNA 13-PTNLD9-TUMOR_peak_45191 chr6 45965608 45966160 + 31.53450 NA intron (NM_001114086, intron 1 of 5) intron (NM_001114086, intron 1 of 5) 17742 NM_001256023 53405 Hs.485489 NM_016929 HPRD:06292 CLIC5 MST130|MSTP130 chloride intracellular channel 5 protein-coding 13-PTNLD9-TUMOR_peak_1948 chr1 59314529 59315096 + 31.52541 NA intron (NR_108106, intron 1 of 1) intron (NR_108106, intron 1 of 1) 63989 NR_034015 100131060 Hs.680604 NR_034014 ENSG00000234807 LINC01135 - long intergenic non-protein coding RNA 1135 ncRNA 13-PTNLD9-TUMOR_peak_27399 chr2 85185292 85185866 + 31.51795 NA Intergenic Intergenic -12652 NM_020122 56888 Hs.654968 NM_020122 HPRD:13761 KCMF1 DEBT91|FIGC|PCMF|ZZZ1 potassium channel modulatory factor 1 protein-coding 13-PTNLD9-TUMOR_peak_54969 chr9 136009162 136009426 + 31.50975 NA intron (NM_001042368, intron 1 of 17) intron (NM_001042368, intron 1 of 17) -2750 NM_001271774 5900 Hs.106185 NM_006266 HPRD:03371 RALGDS RGDS|RGF|RalGEF ral guanine nucleotide dissociation stimulator protein-coding 13-PTNLD9-TUMOR_peak_53299 chr9 42753817 42754612 + 31.45734 NA Intergenic HERVL-int|LTR|ERVL -17494 NR_121570 101928381 Hs.708686 NR_121570 LOC101928381 - uncharacterized LOC101928381 ncRNA 13-PTNLD9-TUMOR_peak_50953 chr8 55122017 55122401 + 31.45213 NA Intergenic Intergenic 74428 NM_014175 29088 Hs.18349 NM_014175 MRPL15 L15mt|MRP-L15|MRP-L7|RPML7 mitochondrial ribosomal protein L15 protein-coding 13-PTNLD9-TUMOR_peak_1688 chr1 48035535 48035824 + 31.42227 NA Intergenic MIRb|SINE|MIR 133990 NM_004474 2306 Hs.166188 NM_004474 HPRD:03735 FOXD2 FKHL17|FREAC-9|FREAC9 forkhead box D2 protein-coding 13-PTNLD9-TUMOR_peak_33863 chr3 13891684 13892161 + 31.40801 NA intron (NM_004625, intron 3 of 3) intron (NM_004625, intron 3 of 3) 29696 NM_004625 7476 Hs.72290 NM_004625 WNT7A - wingless-type MMTV integration site family, member 7A protein-coding 13-PTNLD9-TUMOR_peak_48671 chr7 102753678 102753962 + 31.35074 NA intron (NM_198990, intron 4 of 5) intron (NM_198990, intron 4 of 5) 29030 NR_026660 100129424 Hs.720729 NR_026660 RPL19P12 RPL19_4_829 ribosomal protein L19 pseudogene 12 pseudo 13-PTNLD9-TUMOR_peak_42434 chr5 142284027 142284246 + 31.32893 NA intron (NM_015071, intron 8 of 22) intron (NM_015071, intron 8 of 22) -35661 NR_046680 100874239 Hs.570896 NR_046680 ENSG00000226272 ARHGAP26-AS1 - ARHGAP26 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_2509 chr1 94167231 94167577 + 31.32075 NA intron (NM_001261408, intron 3 of 13) intron (NM_001261408, intron 3 of 13) -20010 NM_003567 8412 Hs.36958 NM_003567 HPRD:05268 BCAR3 NSP2|SH2D3B breast cancer anti-estrogen resistance 3 protein-coding 13-PTNLD9-TUMOR_peak_44479 chr6 30737393 30737644 + 31.25578 NA Intergenic Intergenic -25191 NM_003897 8870 Hs.76095 NM_003897 HPRD:04295 IER3 DIF-2|DIF2|GLY96|IEX-1|IEX-1L|IEX1|PRG1 immediate early response 3 protein-coding 13-PTNLD9-TUMOR_peak_42343 chr5 140383709 140384122 + 31.24449 NA intron (NM_018902, intron 3 of 3) intron (NM_018902, intron 3 of 3) 37563 NM_031883 56134 Hs.199343 NM_018899 HPRD:07331 PCDHAC2 PCDH-ALPHA-C2 protocadherin alpha subfamily C, 2 protein-coding 13-PTNLD9-TUMOR_peak_3010 chr1 117185931 117186179 + 31.21006 NA intron (NM_001007237, intron 2 of 10) intron (NM_001007237, intron 2 of 10) 23523 NM_001542 3321 Hs.171057 NM_001542 HPRD:04602 IGSF3 EWI-3|V8 immunoglobulin superfamily, member 3 protein-coding 13-PTNLD9-TUMOR_peak_6312 chr10 3542469 3542959 + 31.18620 NA Intergenic Intergenic 284759 NM_001300 1316 Hs.4055 NM_001300 HPRD:03632 KLF6 BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9 Kruppel-like factor 6 protein-coding 13-PTNLD9-TUMOR_peak_9649 chr11 45110749 45111259 + 31.16670 NA Intergenic L2b|LINE|L2 -4560 NR_046338 56981 Hs.178715 NM_020229 HPRD:11456 PRDM11 PFM8 PR domain containing 11 protein-coding 13-PTNLD9-TUMOR_peak_54324 chr9 109654999 109655264 + 31.15034 NA intron (NR_031752, intron 2 of 3) intron (NR_031752, intron 2 of 3) 29753 NM_021224 58499 Hs.370379 NM_021224 HPRD:10333 ZNF462 Zfp462 zinc finger protein 462 protein-coding 13-PTNLD9-TUMOR_peak_25885 chr1_gl000192_random 262858 263278 + 31.10826 NA intron (NR_103556, intron 16 of 45) intron (NR_103556, intron 16 of 45) 144442 NR_103556 100288805 Hs.648712 NR_049745 HYDIN2 HYDINP1 HYDIN2, axonemal central pair apparatus protein (pseudogene) pseudo 13-PTNLD9-TUMOR_peak_48115 chr7 77955559 77955857 + 31.10826 NA intron (NM_001301128, intron 9 of 20) L2c|LINE|L2 -20851 NR_003680 399670 Hs.568045 NR_003680 HPRD:14588 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 13-PTNLD9-TUMOR_peak_43663 chr6 7058623 7059007 + 31.07628 NA Intergenic Intergenic -49015 NM_001168344 6239 Hs.298248 NM_002955 HPRD:03733 RREB1 FINB|HNT|LZ321|RREB-1|Zep-1 ras responsive element binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_37952 chr4 9589644 9589941 + 31.07628 NA Intergenic Intergenic -31855 NR_031688 100302277 NR_031688 miRBase:MI0006422 MIR548I2 MIR548I-2|MIRN548I2|hsa-mir-548i-2 microRNA 548i-2 ncRNA 13-PTNLD9-TUMOR_peak_45027 chr6 42262555 42262804 + 31.07628 NA intron (NM_033502, intron 4 of 17) intron (NM_033502, intron 4 of 17) -77046 NM_018141 55173 Hs.380887 NM_018141 HPRD:14775 MRPS10 MRP-S10|PNAS-122 mitochondrial ribosomal protein S10 protein-coding 13-PTNLD9-TUMOR_peak_34038 chr3 21759757 21759944 + 31.07628 NA intron (NM_024697, intron 1 of 7) intron (NM_024697, intron 1 of 7) 32966 NM_024697 79750 Hs.21026 NM_024697 HPRD:07990 ZNF385D ZNF659 zinc finger protein 385D protein-coding 13-PTNLD9-TUMOR_peak_3708 chr1 153347920 153348295 + 31.05667 NA promoter-TSS (NM_005621) promoter-TSS (NM_005621) -32 NM_005621 6283 Hs.19413 NM_005621 HPRD:04383 S100A12 CAAF1|CAGC|CGRP|ENRAGE|MRP-6|MRP6|p6 S100 calcium binding protein A12 protein-coding 13-PTNLD9-TUMOR_peak_49621 chr7 150125835 150126112 + 31.00139 NA Intergenic Intergenic -4769 NR_034033 285972 Hs.647110 NR_034033 ENSG00000242258 LINC00996 - long intergenic non-protein coding RNA 996 ncRNA 13-PTNLD9-TUMOR_peak_37065 chr3 186463861 186464131 + 31.00139 NA Intergenic Intergenic 28898 NM_000893 3827 Hs.77741 NM_000893 KNG1 BDK|BK|KNG kininogen 1 protein-coding 13-PTNLD9-TUMOR_peak_51787 chr8 122906010 122906336 + 30.98187 NA Intergenic L2c|LINE|L2 -252543 NM_005328 3037 Hs.159226 NM_005328 HAS2 - hyaluronan synthase 2 protein-coding 13-PTNLD9-TUMOR_peak_49357 chr7 139616339 139616671 + 30.95836 NA intron (NR_029394, intron 4 of 12) intron (NR_029394, intron 4 of 12) 87553 NR_029394 6916 Hs.520757 NM_001061 HPRD:02035 TBXAS1 BDPLT14|CYP5|CYP5A1|GHOSAL|THAS|TS|TXAS|TXS thromboxane A synthase 1 (platelet) protein-coding 13-PTNLD9-TUMOR_peak_48338 chr7 93812772 93813044 + 30.92348 NA Intergenic Intergenic -179218 NM_005868 10282 Hs.489132 NM_005868 HPRD:16107 BET1 HBET1 Bet1 golgi vesicular membrane trafficking protein protein-coding 13-PTNLD9-TUMOR_peak_37147 chr3 188391649 188391964 + 30.88766 NA intron (NM_001167671, intron 6 of 10) intron (NM_001167671, intron 6 of 10) -105352 NR_046623 100873917 Hs.674993 NR_046623 LPP-AS1 - LPP antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_28165 chr2 114591670 114591913 + 30.87004 NA intron (NR_110174, intron 3 of 4) AluSz|SINE|Alu -55720 NR_102318 10096 Hs.433512 NM_005721 HPRD:05024 ACTR3 ARP3 ARP3 actin-related protein 3 homolog (yeast) protein-coding 13-PTNLD9-TUMOR_peak_2230 chr1 77505499 77505752 + 30.85695 NA intron (NM_030965, intron 2 of 4) intron (NM_030965, intron 2 of 4) -20203 NR_106978 102466995 NR_106978 MIR7156 hsa-mir-7156 microRNA 7156 ncRNA 13-PTNLD9-TUMOR_peak_53213 chr9 38227153 38227475 + 30.84126 NA Intergenic Intergenic -158104 NM_003028 6461 Hs.521482 NM_003028 SHB bA3J10.2 Src homology 2 domain containing adaptor protein B protein-coding 13-PTNLD9-TUMOR_peak_9054 chr11 11169609 11169993 + 30.81806 NA Intergenic Intergenic 205103 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2, alpha 3 polypeptide protein-coding 13-PTNLD9-TUMOR_peak_6746 chr10 27070013 27070448 + 30.79433 NA intron (NM_001012750, intron 2 of 10) HERVL40-int|LTR|ERVL 79786 NM_001012750 10006 Hs.508148 NM_005470 HPRD:04336 ABI1 ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1 abl-interactor 1 protein-coding 13-PTNLD9-TUMOR_peak_51965 chr8 128047842 128048370 + 30.79370 NA Intergenic Intergenic 22707 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_5697 chr1 228275613 228275857 + 30.78122 NA intron (NM_001024227, intron 1 of 4) intron (NM_001024227, intron 1 of 4) 4884 NM_001024228 375 Hs.286221 NM_001658 HPRD:00054 ARF1 - ADP-ribosylation factor 1 protein-coding 13-PTNLD9-TUMOR_peak_1873 chr1 55370208 55370599 + 30.78122 NA Intergenic Intergenic -17482 NM_014762 1718 Hs.498727 NM_014762 HPRD:05916 DHCR24 DCE|Nbla03646|SELADIN1|seladin-1 24-dehydrocholesterol reductase protein-coding 13-PTNLD9-TUMOR_peak_35697 chr3 125539008 125539301 + 30.75299 NA Intergenic Intergenic -29759 NR_031687 100302204 NR_031687 miRBase:MI0006421 MIR548I1 MIR548I-1|MIRN548I1|hsa-mir-548i-1 microRNA 548i-1 ncRNA 13-PTNLD9-TUMOR_peak_28062 chr2 112125500 112125821 + 30.75299 NA intron (NR_015395, intron 1 of 1) intron (NR_015395, intron 1 of 1) -46992 NR_039634 100616499 NR_039634 miRBase:MI0016775 MIR4435-1 - microRNA 4435-1 ncRNA 13-PTNLD9-TUMOR_peak_1071 chr1 35259658 35260026 + 30.74682 NA exon (NM_002060, exon 2 of 2) exon (NM_002060, exon 2 of 2) 1243 NM_002060 2701 Hs.296310 NM_002060 HPRD:08509 GJA4 CX37 gap junction protein, alpha 4, 37kDa protein-coding 13-PTNLD9-TUMOR_peak_45022 chr6 42125845 42126100 + 30.74577 NA intron (NM_000409, intron 1 of 5) intron (NM_000409, intron 1 of 5) 2828 NM_000409 2978 Hs.92858 NM_000409 HPRD:02648 GUCA1A C6orf131|COD3|CORD14|GCAP|GCAP1|GUCA|GUCA1|dJ139D8.6 guanylate cyclase activator 1A (retina) protein-coding 13-PTNLD9-TUMOR_peak_41961 chr5 127270507 127270870 + 30.73779 NA Intergenic Intergenic 148078 NR_015360 644873 Hs.340623 NR_015360 ENSG00000245937 LINC01184 - long intergenic non-protein coding RNA 1184 ncRNA 13-PTNLD9-TUMOR_peak_36404 chr3 150936882 150937226 + 30.71208 NA intron (NM_014879, intron 2 of 2) intron (NM_014879, intron 2 of 2) -16066 NM_013308 29909 Hs.549152 NM_013308 HPRD:17071 GPR171 H963 G protein-coupled receptor 171 protein-coding 13-PTNLD9-TUMOR_peak_45015 chr6 42089219 42089530 + 30.70292 NA intron (NM_001164446, intron 2 of 4) intron (NM_001164446, intron 2 of 4) 21341 NM_001164446 647024 Hs.444277 NM_001164446 ENSG00000188112 C6orf132 bA7K24.2 chromosome 6 open reading frame 132 protein-coding 13-PTNLD9-TUMOR_peak_25878 chr1_gl000192_random 121382 121675 + 30.68497 NA Intergenic Intergenic 285982 NR_103556 100288805 Hs.648712 NR_049745 HYDIN2 HYDINP1 HYDIN2, axonemal central pair apparatus protein (pseudogene) pseudo 13-PTNLD9-TUMOR_peak_17859 chr15 84891635 84891937 + 30.67888 NA intron (NR_027001, intron 1 of 6) LTR10G|LTR|ERV1 7134 NR_027001 388152 Hs.405809 NM_203426 HPRD:14199 GOLGA2P7 - golgin A2 pseudogene 7 pseudo 13-PTNLD9-TUMOR_peak_6536 chr10 14439133 14439415 + 30.65829 NA Intergenic Intergenic -39301 NR_031668 100302116 NR_031668 miRBase:MI0006401 MIR1265 MIRN1265|hsa-mir-1265 microRNA 1265 ncRNA 13-PTNLD9-TUMOR_peak_43939 chr6 16277653 16278133 + 30.64001 NA intron (NM_006877, intron 5 of 8) L2b|LINE|L2 39082 NM_006877 2766 Hs.484741 NM_006877 HPRD:00754 GMPR GMPR1 guanosine monophosphate reductase protein-coding 13-PTNLD9-TUMOR_peak_34450 chr3 46977046 46977256 + 30.64001 NA intron (NM_001277074, intron 2 of 6) intron (NM_001277074, intron 2 of 6) 40840 NR_102269 151903 Hs.631918 NM_144716 HPRD:13007 CCDC12 - coiled-coil domain containing 12 protein-coding 13-PTNLD9-TUMOR_peak_9749 chr11 47995848 47996297 + 30.64001 NA Intergenic Intergenic -6038 NM_001098503 5795 Hs.318547 NM_002843 HPRD:02955 PTPRJ CD148|DEP1|HPTPeta|R-PTP-ETA|SCC1 protein tyrosine phosphatase, receptor type, J protein-coding 13-PTNLD9-TUMOR_peak_43817 chr6 12348830 12349207 + 30.60772 NA Intergenic L2b|LINE|L2 43568 NR_103808 100887744 NR_103808 RNU6-48P RNU6-48 RNA, U6 small nuclear 48, pseudogene snRNA 13-PTNLD9-TUMOR_peak_41485 chr5 88753891 88754275 + 30.60772 NA Intergenic Intergenic -554161 NM_001193347 4208 Hs.649965 NM_002397 HPRD:02809 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 13-PTNLD9-TUMOR_peak_27171 chr2 69481085 69481426 + 30.57226 NA Intergenic Intergenic 133131 NM_001244710 2673 Hs.580300 NM_002056 HPRD:00702 GFPT1 CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG glutamine--fructose-6-phosphate transaminase 1 protein-coding 13-PTNLD9-TUMOR_peak_40237 chr5 6704523 6704980 + 30.57103 NA intron (NR_103771, intron 1 of 2) intron (NR_103771, intron 1 of 2) 3073 NR_103771 100505625 Hs.550028 NR_103771 ENSG00000248677 LOC100505625 - uncharacterized LOC100505625 ncRNA 13-PTNLD9-TUMOR_peak_47093 chr7 25064860 25065123 + 30.51716 NA Intergenic Intergenic -45160 NM_015550 26031 Hs.520259 NM_015550 HPRD:09474 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein-like 3 protein-coding 13-PTNLD9-TUMOR_peak_34003 chr3 17841791 17842019 + 30.51688 NA Intergenic MLT2F|LTR|ERVL -59506 NM_014744 9779 Hs.475629 NM_014744 HPRD:10262 TBC1D5 - TBC1 domain family, member 5 protein-coding 13-PTNLD9-TUMOR_peak_44840 chr6 36974814 36975114 + 30.50337 NA intron (NM_173558, intron 1 of 15) intron (NM_173558, intron 1 of 15) 1541 NM_173558 221472 Hs.509664 NM_173558 HPRD:05478 FGD2 ZFYVE4 FYVE, RhoGEF and PH domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_54373 chr9 111305509 111305997 + 30.49800 NA Intergenic Intergenic 312522 NM_006686 10880 Hs.534390 NM_006686 ACTL7B Tact1 actin-like 7B protein-coding 13-PTNLD9-TUMOR_peak_6396 chr10 6281220 6281536 + 30.48716 NA Intergenic Intergenic 36538 NM_004566 5209 Hs.195471 NM_004566 HPRD:05612 PFKFB3 IPFK2|PFK2 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 protein-coding 13-PTNLD9-TUMOR_peak_7563 chr10 69913300 69913712 + 30.48716 NA intron (NM_001256268, intron 10 of 23) intron (NM_001256268, intron 10 of 23) 44316 NM_001256268 84665 Hs.55205 NM_032578 HPRD:10536 MYPN CMD1DD|CMH22|MYOP|RCM4 myopalladin protein-coding 13-PTNLD9-TUMOR_peak_15497 chr14 34058601 34058830 + 30.48245 NA intron (NM_001165893, intron 4 of 10) intron (NM_001165893, intron 4 of 10) 361569 NM_022073 112399 Hs.135507 NM_022073 HPRD:06972 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia-inducible factor 3 protein-coding 13-PTNLD9-TUMOR_peak_2561 chr1 95088331 95088671 + 30.47853 NA Intergenic Intergenic -81088 NM_001993 2152 Hs.62192 NM_001993 HPRD:00603 F3 CD142|TF|TFA coagulation factor III (thromboplastin, tissue factor) protein-coding 13-PTNLD9-TUMOR_peak_21565 chr17 54993120 54993507 + 30.45971 NA Intergenic Intergenic -1904 NM_005082 7706 Hs.528952 NM_005082 HPRD:02711 TRIM25 EFP|RNF147|Z147|ZNF147 tripartite motif containing 25 protein-coding 13-PTNLD9-TUMOR_peak_43032 chr5 172167852 172168130 + 30.44334 NA Intergenic Intergenic -14515 NM_001287812 101928093 Hs.646902 NM_001287812 LOC101928093 - uncharacterized LOC101928093 protein-coding 13-PTNLD9-TUMOR_peak_2983 chr1 116325620 116325931 + 30.43722 NA Intergenic Intergenic -14349 NM_001232 845 Hs.57975 NM_001232 HPRD:00256 CASQ2 PDIB2 calsequestrin 2 (cardiac muscle) protein-coding 13-PTNLD9-TUMOR_peak_16593 chr14 101539575 101539853 + 30.42836 NA TTS (NR_047664) TTS (NR_047664) 3466 NR_047664 100507257 Hs.301755 NR_047664 ENSG00000223403 MEG9 LINC00584 maternally expressed 9 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_2591 chr1 96828185 96828473 + 30.42518 NA intron (NR_110693, intron 1 of 5) L2a|LINE|L2 11352 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LOC101928241 - uncharacterized LOC101928241 ncRNA 13-PTNLD9-TUMOR_peak_3066 chr1 119822114 119822439 + 30.42212 NA Intergenic Intergenic -89123 NM_016527 51179 Hs.659767 NM_016527 HPRD:05532 HAO2 GIG16|HAOX2 hydroxyacid oxidase 2 (long chain) protein-coding 13-PTNLD9-TUMOR_peak_260 chr1 8121380 8121591 + 30.38781 NA Intergenic Intergenic -35092 NM_018948 54206 Hs.605445 NM_018948 HPRD:09218 ERRFI1 GENE-33|MIG-6|MIG6|RALT ERBB receptor feedback inhibitor 1 protein-coding 13-PTNLD9-TUMOR_peak_47534 chr7 55200467 55200910 + 30.35609 NA intron (NM_201284, intron 1 of 15) intron (NM_201284, intron 1 of 15) 55954 NR_047551 100507500 Hs.720489 NR_047551 ENSG00000224057 EGFR-AS1 - EGFR antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_56593 chrX 149369231 149369646 + 30.35609 NA Intergenic Intergenic -26801 NR_031748 100313839 NR_031748 miRBase:MI0010633 MIR2114 - microRNA 2114 ncRNA 13-PTNLD9-TUMOR_peak_11555 chr11 126264792 126264982 + 30.33398 NA intron (NM_006278, intron 1 of 10) intron (NM_006278, intron 1 of 10) -8424 NM_001254758 6484 Hs.591947 NM_006278 HPRD:00084 ST3GAL4 CGS23|NANTA3|SAT3|SIAT4|SIAT4C|ST3GalIV|STZ ST3 beta-galactoside alpha-2,3-sialyltransferase 4 protein-coding 13-PTNLD9-TUMOR_peak_45355 chr6 53826867 53827137 + 30.31768 NA Intergenic Intergenic -36686 NR_046832 100874282 Hs.571169 NR_046832 ENSG00000236996 MLIP-IT1 - MLIP intronic transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_52150 chr8 134045481 134045929 + 30.29441 NA intron (NM_003235, intron 41 of 47) intron (NM_003235, intron 41 of 47) 13121 NR_107002 102466865 NR_107002 MIR7848 hsa-mir-7848 microRNA 7848 ncRNA 13-PTNLD9-TUMOR_peak_36026 chr3 134565805 134566283 + 30.29441 NA intron (NM_004441, intron 1 of 15) intron (NM_004441, intron 1 of 15) 51945 NM_004441 2047 Hs.116092 NM_004441 HPRD:02790 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 13-PTNLD9-TUMOR_peak_40503 chr5 27242018 27242286 + 30.28338 NA Intergenic L1PA16|LINE|L1 -203463 NM_016279 1007 Hs.272212 NM_016279 HPRD:13021 CDH9 - cadherin 9, type 2 (T1-cadherin) protein-coding 13-PTNLD9-TUMOR_peak_33957 chr3 16101884 16102248 + 30.24447 NA Intergenic Intergenic -114118 NM_054110 117248 Hs.411308 NM_054110 HPRD:13563 GALNT15 GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5 polypeptide N-acetylgalactosaminyltransferase 15 protein-coding 13-PTNLD9-TUMOR_peak_33971 chr3 16363878 16364114 + 30.22073 NA intron (NM_015150, intron 9 of 9) intron (NM_015150, intron 9 of 9) 57329 NM_138381 92106 Hs.655449 NM_138381 HPRD:14446 OXNAD1 - oxidoreductase NAD-binding domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_51786 chr8 122824093 122824328 + 30.22073 NA Intergenic L3|LINE|CR1 -170580 NM_005328 3037 Hs.159226 NM_005328 HAS2 - hyaluronan synthase 2 protein-coding 13-PTNLD9-TUMOR_peak_4504 chr1 176835076 176835602 + 30.22073 NA intron (NM_004319, intron 22 of 22) intron (NM_004319, intron 22 of 22) 163242 NR_030163 574441 NR_030163 MIR488 MIRN488|hsa-mir-488 microRNA 488 ncRNA 13-PTNLD9-TUMOR_peak_36405 chr3 151022843 151023478 + 30.21672 NA intron (NM_023915, intron 1 of 2) intron (NM_023915, intron 1 of 2) 11476 NM_023915 53836 Hs.591292 NM_023915 HPRD:16209 GPR87 GPR95|KPG_002 G protein-coupled receptor 87 protein-coding 13-PTNLD9-TUMOR_peak_43653 chr6 6811429 6812131 + 30.20888 NA Intergenic Intergenic -188721 NR_026970 285780 Hs.655737 NM_173675 HPRD:08165 LY86-AS1 LY86-AS|LY86AS LY86 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_38819 chr4 87848992 87849413 + 30.19079 NA intron (NR_038841, intron 2 of 2) MIRb|SINE|MIR 6800 NR_038841 100506746 Hs.657766 NR_038841 ENSG00000163633 LOC100506746 - uncharacterized LOC100506746 ncRNA 13-PTNLD9-TUMOR_peak_3383 chr1 147123305 147123634 + 30.19079 NA intron (NM_016361, intron 7 of 9) intron (NM_016361, intron 7 of 9) 19165 NM_016361 51205 Hs.562154 NM_016361 ACP6 ACPL1|LPAP|PACPL1 acid phosphatase 6, lysophosphatidic protein-coding 13-PTNLD9-TUMOR_peak_5119 chr1 203876168 203876431 + 30.17981 NA Intergenic Kanga1b|DNA|TcMar-Tc2 45559 NM_003094 6635 Hs.334612 NM_003094 SNRPE B-raf|HYPT11|SME|Sm-E small nuclear ribonucleoprotein polypeptide E protein-coding 13-PTNLD9-TUMOR_peak_12342 chr12 26306371 26306644 + 30.15490 NA Intergenic Intergenic -28504 NM_030762 79365 Hs.177841 NM_030762 HPRD:16204 BHLHE41 BHLHB3|DEC2|SHARP1|hDEC2 basic helix-loop-helix family, member e41 protein-coding 13-PTNLD9-TUMOR_peak_40242 chr5 6766730 6766965 + 30.14728 NA Intergenic Intergenic 20746 NM_001171806 11044 Hs.481542 NM_006999 HPRD:09239 PAPD7 LAK-1|LAK1|POLK|POLS|TRF4|TRF4-1|TRF41|TUTASE5 PAP associated domain containing 7 protein-coding 13-PTNLD9-TUMOR_peak_23480 chr18 74171787 74172254 + 30.12407 NA intron (NM_014643, intron 2 of 7) intron (NM_014643, intron 2 of 7) 35126 NM_014643 9658 Hs.436973 NM_014643 ENSG00000101493 ZNF516 HsT287 zinc finger protein 516 protein-coding 13-PTNLD9-TUMOR_peak_53625 chr9 75048843 75049139 + 30.12316 NA Intergenic Intergenic -68828 NM_006007 7763 Hs.406096 NM_006007 HPRD:05302 ZFAND5 ZA20D2|ZFAND5A|ZNF216 zinc finger, AN1-type domain 5 protein-coding 13-PTNLD9-TUMOR_peak_49522 chr7 144011643 144012005 + 30.10913 NA Intergenic Intergenic -3394 NM_001001802 402317 Hs.591830 NM_001001802 HPRD:18486 OR2A42 - olfactory receptor, family 2, subfamily A, member 42 protein-coding 13-PTNLD9-TUMOR_peak_37182 chr3 189524390 189524636 + 30.09152 NA intron (NM_001114980, intron 1 of 11) intron (NM_001114980, intron 1 of 11) 17064 NM_001114981 8626 Hs.137569 NM_003722 HPRD:04469 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 13-PTNLD9-TUMOR_peak_1358 chr1 41884618 41884879 + 30.08615 NA Intergenic MIR3|SINE|MIR 57145 NM_001291281 100132074 Hs.559677 NM_001291281 ENSG00000204060 FOXO6 - forkhead box O6 protein-coding 13-PTNLD9-TUMOR_peak_1888 chr1 55894770 55895227 + 30.08505 NA Intergenic Intergenic 203684 NR_039618 100616272 NR_039618 miRBase:MI0016759 MIR4422 - microRNA 4422 ncRNA 13-PTNLD9-TUMOR_peak_26512 chr2 31607664 31608020 + 30.07866 NA intron (NM_000379, intron 9 of 35) intron (NM_000379, intron 9 of 35) 29769 NM_000379 7498 Hs.250 NM_000379 HPRD:06363 XDH XO|XOR xanthine dehydrogenase protein-coding 13-PTNLD9-TUMOR_peak_52051 chr8 130527910 130528165 + 30.07755 NA Intergenic MLT1C|LTR|ERVL-MaLR 271097 NM_031415 56169 Hs.133244 NM_031415 HPRD:12222 GSDMC MLZE gasdermin C protein-coding 13-PTNLD9-TUMOR_peak_7813 chr10 79176105 79176492 + 30.07755 NA intron (NM_001271519, intron 1 of 28) intron (NM_001271519, intron 1 of 28) 221279 NM_001271520 3778 Hs.144795 NM_002247 HPRD:15967 KCNMA1 BKTM|KCa1.1|MaxiK|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|mSLO1 potassium large conductance calcium-activated channel, subfamily M, alpha member 1 protein-coding 13-PTNLD9-TUMOR_peak_8731 chr11 460702 461020 + 30.04549 NA intron (NM_030783, intron 2 of 11) intron (NM_030783, intron 2 of 11) 10581 NM_030783 81490 Hs.731700 NM_030783 HPRD:17927 PTDSS2 PSS2 phosphatidylserine synthase 2 protein-coding 13-PTNLD9-TUMOR_peak_45326 chr6 53191366 53191729 + 30.01104 NA intron (NM_001242830, intron 1 of 6) intron (NM_001242830, intron 1 of 6) 10868 NR_046241 647190 Hs.520189 NR_046241 RPS16P5 RPS16_3_702 ribosomal protein S16 pseudogene 5 pseudo 13-PTNLD9-TUMOR_peak_48163 chr7 81314323 81314556 + 29.99687 NA Intergenic MLT1I|LTR|ERVL-MaLR 85013 NM_001010933 3082 Hs.396530 NM_000601 HPRD:00799 HGF DFNB39|F-TCF|HGFB|HPTA|SF hepatocyte growth factor (hepapoietin A; scatter factor) protein-coding 13-PTNLD9-TUMOR_peak_51878 chr8 125878777 125879103 + 29.98644 NA Intergenic Intergenic -75310 NR_027321 157381 Hs.638933 NR_027321 ENSG00000249816 LINC00964 - long intergenic non-protein coding RNA 964 ncRNA 13-PTNLD9-TUMOR_peak_51055 chr8 66629669 66629830 + 29.98255 NA 3' UTR (NM_001242318, exon 13 of 13) 3' UTR (NM_001242318, exon 13 of 13) 47641 NM_001145838 9650 Hs.584788 NM_014637 HPRD:12389 MTFR1 CHPPR|FAM54A2 mitochondrial fission regulator 1 protein-coding 13-PTNLD9-TUMOR_peak_37727 chr4 4719488 4719755 + 29.98022 NA Intergenic Intergenic -126543 NR_125765 103695434 Hs.550830 NR_125765 LINC01396 - long intergenic non-protein coding RNA 1396 ncRNA 13-PTNLD9-TUMOR_peak_41352 chr5 76429035 76429226 + 29.97683 NA intron (NR_024398, intron 3 of 3) intron (NR_024398, intron 3 of 3) -46100 NM_032367 84327 Hs.584988 NM_032367 ZBED3 - zinc finger, BED-type containing 3 protein-coding 13-PTNLD9-TUMOR_peak_47078 chr7 24418912 24419188 + 29.96920 NA Intergenic Intergenic 95243 NM_000905 4852 Hs.1832 NM_000905 HPRD:01214 NPY PYY4 neuropeptide Y protein-coding 13-PTNLD9-TUMOR_peak_3378 chr1 147010933 147011133 + 29.94281 NA Intergenic Intergenic -2238 NM_004326 607 Hs.415209 NM_004326 HPRD:04000 BCL9 LGS B-cell CLL/lymphoma 9 protein-coding 13-PTNLD9-TUMOR_peak_51420 chr8 101880762 101881134 + 29.91125 NA Intergenic Intergenic 81851 NM_001135702 7534 Hs.492407 NM_003406 HPRD:03183 YWHAZ 14-3-3-zeta|HEL-S-3|HEL4|KCIP-1|YWHAD tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta protein-coding 13-PTNLD9-TUMOR_peak_17280 chr15 51296339 51296757 + 29.90442 NA 3' UTR (NM_001252127, exon 21 of 21) 3' UTR (NM_001252127, exon 21 of 21) 60222 NR_027642 100132724 Hs.730493 NR_027642 DCAF13P3 - DDB1 and CUL4 associated factor 13 pseudogene 3 pseudo 13-PTNLD9-TUMOR_peak_7633 chr10 72027256 72027500 + 29.89277 NA intron (NM_022146, intron 1 of 3) intron (NM_022146, intron 1 of 3) 16072 NM_022146 64106 Hs.302026 NM_022146 NPFFR1 GPR147|NPFF1|NPFF1R1|OT7T022 neuropeptide FF receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_23922 chr19 10370801 10371074 + 29.86796 NA TTS (NM_015956) TTS (NM_015956) 8297 NM_015956 51073 Hs.279652 NM_015956 HPRD:14759 MRPL4 CGI-28|L4mt mitochondrial ribosomal protein L4 protein-coding 13-PTNLD9-TUMOR_peak_54204 chr9 101610661 101611071 + 29.85177 NA intron (NM_024642, intron 9 of 9) MamRep1161|DNA|TcMar 40885 NM_024642 79695 Hs.47099 NM_024642 HPRD:13561 GALNT12 CRCS1|GalNAc-T12 polypeptide N-acetylgalactosaminyltransferase 12 protein-coding 13-PTNLD9-TUMOR_peak_44344 chr6 27979529 27979847 + 29.85177 NA Intergenic Intergenic 54669 NM_012367 26212 Hs.532145 NM_012367 HPRD:17696 OR2B6 OR2B1|OR2B1P|OR2B5|OR2B6P|OR5-40|OR5-41|OR6-31|dJ408B20.2 olfactory receptor, family 2, subfamily B, member 6 protein-coding 13-PTNLD9-TUMOR_peak_28200 chr2 118870515 118870863 + 29.81594 NA Intergenic Intergenic 24639 NM_016133 51141 Hs.7089 NM_016133 HPRD:16361 INSIG2 - insulin induced gene 2 protein-coding 13-PTNLD9-TUMOR_peak_44955 chr6 40930032 40930312 + 29.80702 NA intron (NR_110873, intron 1 of 5) intron (NR_110873, intron 1 of 5) 60847 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 13-PTNLD9-TUMOR_peak_43787 chr6 11632539 11632861 + 29.78696 NA Intergenic Intergenic 94240 NM_001100829 100113407 Hs.146317 NM_001100829 ENSG00000205269 TMEM170B - transmembrane protein 170B protein-coding 13-PTNLD9-TUMOR_peak_6540 chr10 14508359 14508616 + 29.77585 NA Intergenic Intergenic 29912 NR_031668 100302116 NR_031668 miRBase:MI0006401 MIR1265 MIRN1265|hsa-mir-1265 microRNA 1265 ncRNA 13-PTNLD9-TUMOR_peak_39042 chr4 108929942 108930209 + 29.74234 NA intron (NM_001184705, intron 1 of 8) intron (NM_001184705, intron 1 of 8) 19205 NM_005327 3033 Hs.438289 NM_005327 ENSG00000138796 HADH HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD hydroxyacyl-CoA dehydrogenase protein-coding 13-PTNLD9-TUMOR_peak_33961 chr3 16143041 16143536 + 29.74234 NA Intergenic LTR10F|LTR|ERV1 -72896 NM_054110 117248 Hs.411308 NM_054110 HPRD:13563 GALNT15 GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5 polypeptide N-acetylgalactosaminyltransferase 15 protein-coding 13-PTNLD9-TUMOR_peak_23979 chr19 11152941 11153245 + 29.74012 NA intron (NM_001128846, intron 28 of 32) intron (NM_001128846, intron 28 of 32) -46945 NM_001195799 3949 Hs.213289 NM_000527 HPRD:06091 LDLR FH|FHC|LDLCQ2 low density lipoprotein receptor protein-coding 13-PTNLD9-TUMOR_peak_44700 chr6 33640699 33640924 + 29.74012 NA intron (NM_002224, intron 22 of 57) intron (NM_002224, intron 22 of 57) 38717 NM_032340 84300 Hs.745020 NM_032340 HPRD:12847 UQCC2 C6orf125|Cbp6|M19|MNF1|bA6B20.2 ubiquinol-cytochrome c reductase complex assembly factor 2 protein-coding 13-PTNLD9-TUMOR_peak_42110 chr5 133774947 133775338 + 29.72065 NA Intergenic Intergenic -4404 NR_105044 102546229 NR_105044 LOC102546229 - uncharacterized LOC102546229 ncRNA 13-PTNLD9-TUMOR_peak_30974 chr20 36618992 36619305 + 29.68211 NA intron (NM_014657, intron 8 of 8) intron (NM_014657, intron 8 of 8) 42685 NM_014657 9675 Hs.655481 NM_014657 HPRD:13799 TTI1 KIAA0406|smg-10 TELO2 interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_20543 chr17 16768386 16768830 + 29.67653 NA Intergenic Intergenic -32461 NR_029392 400578 Hs.723586 NR_029392 ENSG00000227300 KRT16P2 - keratin 16 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_21226 chr17 43516674 43516926 + 29.67260 NA intron (NR_027782, intron 10 of 10).2 intron (NR_027782, intron 10 of 10).2 -6518 NM_174919 201176 Hs.205326 NM_174919 HPRD:12477 ARHGAP27 CAMGAP1|PP905|SH3D20|SH3P20 Rho GTPase activating protein 27 protein-coding 13-PTNLD9-TUMOR_peak_5834 chr1 232357639 232357897 + 29.66453 NA Intergenic Intergenic 293475 NM_020808 57568 Hs.745009 NM_020808 HPRD:15346 SIPA1L2 SPAL2 signal-induced proliferation-associated 1 like 2 protein-coding 13-PTNLD9-TUMOR_peak_36780 chr3 174673303 174673629 + 29.66453 NA intron (NM_207015, intron 1 of 13) intron (NM_207015, intron 1 of 13) 96355 NM_207015 254827 Hs.565848 NM_207015 HPRD:16388 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase-like 2 protein-coding 13-PTNLD9-TUMOR_peak_5016 chr1 202088148 202088315 + 29.63362 NA Intergenic Intergenic -3798 NM_004767 9283 Hs.132049 NM_004767 GPR37L1 ET(B)R-LP-2|ETBR-LP-2 G protein-coupled receptor 37 like 1 protein-coding 13-PTNLD9-TUMOR_peak_23313 chr18 56675523 56675823 + 29.61272 NA Intergenic L2c|LINE|L2 -27298 NR_024021 390858 Hs.722775 NR_024021 OACYLP ACYL3P O-acyltransferase like, pseudogene pseudo 13-PTNLD9-TUMOR_peak_15553 chr14 35801393 35801672 + 29.61272 NA Intergenic Intergenic 40009 NM_002791 5687 Hs.446260 NM_002791 HPRD:04171 PSMA6 IOTA|PROS27|p27K proteasome (prosome, macropain) subunit, alpha type, 6 protein-coding 13-PTNLD9-TUMOR_peak_54631 chr9 123294792 123294994 + 29.57459 NA intron (NM_001011649, intron 7 of 36) MamRep605|Unknown|Unknown 47555 NR_073556 55755 Hs.269560 NM_018249 HPRD:09740 CDK5RAP2 C48|Cep215|MCPH3 CDK5 regulatory subunit associated protein 2 protein-coding 13-PTNLD9-TUMOR_peak_53449 chr9 67027076 67027338 + 29.55889 NA intron (NR_046175, intron 2 of 3) intron (NR_046175, intron 2 of 3) 4865 NR_046175 286297 Hs.645503 NR_046175 ENSG00000182021 LOC286297 - uncharacterized LOC286297 ncRNA 13-PTNLD9-TUMOR_peak_44631 chr6 32787513 32787832 + 29.54996 NA Intergenic Intergenic -2847 NM_002120 3112 Hs.1802 NM_002120 HPRD:08368 HLA-DOB DOB major histocompatibility complex, class II, DO beta protein-coding 13-PTNLD9-TUMOR_peak_49387 chr7 140326120 140326605 + 29.52835 NA Intergenic Intergenic -24020 NM_015689 27147 Hs.6385 NM_015689 HPRD:17210 DENND2A FAM31D|KIAA1277 DENN/MADD domain containing 2A protein-coding 13-PTNLD9-TUMOR_peak_49045 chr7 129598505 129598791 + 29.51065 NA Intergenic Intergenic -5848 NM_003344 7328 Hs.643548 NM_003344 HPRD:03052 UBE2H E2-20K|GID3|UBC8|UBCH|UBCH2 ubiquitin-conjugating enzyme E2H protein-coding 13-PTNLD9-TUMOR_peak_51064 chr8 67036168 67036473 + 29.50828 NA Intergenic Intergenic -2958 NM_184087 84675 Hs.85524 NM_033058 HPRD:05927 TRIM55 MURF-2|RNF29|muRF2 tripartite motif containing 55 protein-coding 13-PTNLD9-TUMOR_peak_9179 chr11 15433650 15433915 + 29.44512 NA Intergenic Intergenic -231649 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 13-PTNLD9-TUMOR_peak_41249 chr5 72617627 72617977 + 29.44512 NA Intergenic Intergenic 126550 NM_004472 2297 Hs.519385 NM_004472 HPRD:03055 FOXD1 FKHL8|FREAC-4|FREAC4 forkhead box D1 protein-coding 13-PTNLD9-TUMOR_peak_50248 chr8 21766606 21766813 + 29.43325 NA 3' UTR (NM_003974, exon 5 of 5) 3' UTR (NM_003974, exon 5 of 5) 4496 NM_003974 9046 Hs.71215 NM_003974 HPRD:05411 DOK2 p56DOK|p56dok-2 docking protein 2, 56kDa protein-coding 13-PTNLD9-TUMOR_peak_10580 chr11 72968418 72968951 + 29.43325 NA Intergenic Intergenic -6866 NM_001277205 5031 Hs.16362 NM_004154 HPRD:03906 P2RY6 P2Y6 pyrimidinergic receptor P2Y, G-protein coupled, 6 protein-coding 13-PTNLD9-TUMOR_peak_945 chr1 31956205 31956642 + 29.42357 NA Intergenic LTR84b|LTR|ERVL -15416 NR_034112 149086 Hs.729905 NR_034112 ENSG00000228682 LINC01225 - long intergenic non-protein coding RNA 1225 pseudo 13-PTNLD9-TUMOR_peak_36712 chr3 170910103 170910526 + 29.42357 NA intron (NM_001161565, intron 5 of 30) intron (NM_001161565, intron 5 of 30) -85766 NR_030295 693154 NR_030295 MIR569 MIRN569|hsa-mir-569 microRNA 569 ncRNA 13-PTNLD9-TUMOR_peak_6328 chr10 3894515 3894973 + 29.40730 NA Intergenic Intergenic -67271 NM_001160124 1316 Hs.4055 NM_001300 HPRD:03632 KLF6 BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9 Kruppel-like factor 6 protein-coding 13-PTNLD9-TUMOR_peak_35786 chr3 127522516 127522762 + 29.40730 NA intron (NM_001003794, intron 2 of 7) MER113|DNA|hAT-Charlie 19086 NM_007283 11343 Hs.277035 NM_007283 HPRD:17574 MGLL HU-K5|HUK5|MAGL|MGL monoglyceride lipase protein-coding 13-PTNLD9-TUMOR_peak_51674 chr8 117913478 117913766 + 29.39365 NA Intergenic MER20|DNA|hAT-Charlie -26517 NM_006265 5885 Hs.81848 NM_006265 HPRD:05924 RAD21 CDLS4|HR21|HRAD21|MCD1|NXP1|SCC1|hHR21 RAD21 homolog (S. pombe) protein-coding 13-PTNLD9-TUMOR_peak_35032 chr3 76112267 76112464 + 29.39365 NA Intergenic Intergenic -277631 NM_001290210 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 X17|ZNF838 zinc finger protein 717 protein-coding 13-PTNLD9-TUMOR_peak_53306 chr9 42854089 42854351 + 29.38922 NA intron (NR_046175, intron 2 of 3).2 intron (NR_046175, intron 2 of 3).2 -3932 NR_026558 441432 Hs.743215 NR_026558 AQP7P3 AQPap-3 aquaporin 7 pseudogene 3 pseudo 13-PTNLD9-TUMOR_peak_35467 chr3 117267012 117267383 + 29.38003 NA Intergenic Intergenic 626919 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 13-PTNLD9-TUMOR_peak_35402 chr3 112950680 112950935 + 29.34593 NA intron (NM_033254, intron 2 of 19) intron (NM_033254, intron 2 of 19) 19432 NM_033254 91653 Hs.591318 NM_033254 ENSG00000144857 BOC CDON2 BOC cell adhesion associated, oncogene regulated protein-coding 13-PTNLD9-TUMOR_peak_52066 chr8 131041614 131041906 + 29.34593 NA Intergenic AluSz|SINE|Alu -12863 NR_046361 51571 Hs.126941 NM_016623 HPRD:13313 FAM49B L1 family with sequence similarity 49, member B protein-coding 13-PTNLD9-TUMOR_peak_37220 chr3 190303687 190303907 + 29.34259 NA intron (NM_002182, intron 3 of 11) intron (NM_002182, intron 3 of 11) 71957 NM_001167931 3556 Hs.478673 NM_002182 HPRD:04021 IL1RAP C3orf13|IL-1RAcP|IL1R3 interleukin 1 receptor accessory protein protein-coding 13-PTNLD9-TUMOR_peak_38869 chr4 89686981 89687221 + 29.34230 NA intron (NM_001015045, intron 7 of 17) intron (NM_001015045, intron 7 of 17) 56161 NR_002806 285512 Hs.744957 NR_002806 ENSG00000248019 FAM13A-AS1 FAM13A1OS|FAM13AOS|NCRNA00039 FAM13A antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_40378 chr5 14265717 14265963 + 29.30435 NA intron (NM_007118, intron 1 of 56) intron (NM_007118, intron 1 of 56) 122011 NM_007118 7204 Hs.130031 NM_007118 HPRD:03537 TRIO ARHGEF23|tgat trio Rho guanine nucleotide exchange factor protein-coding 13-PTNLD9-TUMOR_peak_49094 chr7 130671930 130672234 + 29.29610 NA intron (NR_109855, intron 2 of 4) L2a|LINE|L2 73859 NR_109780 100506860 Hs.635013 NR_109780 LOC100506860 - uncharacterized LOC100506860 ncRNA 13-PTNLD9-TUMOR_peak_36827 chr3 177494391 177494736 + 29.29430 NA Intergenic Intergenic -40090 NR_110826 102724550 Hs.570526 NR_110826 LOC102724550 - uncharacterized LOC102724550 ncRNA 13-PTNLD9-TUMOR_peak_53032 chr9 33290783 33291141 + 29.28628 NA intron (NM_002504, intron 1 of 23) CpG 544 NM_147133 4799 Hs.413074 NM_002504 HPRD:11936 NFX1 NFX2|TEG-42|Tex42 nuclear transcription factor, X-box binding 1 protein-coding 13-PTNLD9-TUMOR_peak_29399 chr2 192554165 192554392 + 29.26841 NA Intergenic Intergenic 11416 NR_045623 64859 Hs.591610 NM_022837 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_45186 chr6 45917115 45917354 + 29.23233 NA intron (NM_001114086, intron 2 of 5) intron (NM_001114086, intron 2 of 5) -11900 NR_045673 53405 Hs.485489 NM_016929 HPRD:06292 CLIC5 MST130|MSTP130 chloride intracellular channel 5 protein-coding 13-PTNLD9-TUMOR_peak_26837 chr2 47182132 47182588 + 29.22086 NA intron (NM_001288955, intron 2 of 18) MIRc|SINE|MIR -13366 NM_001171511 90411 Hs.662152 NM_139279 HPRD:09693 MCFD2 F5F8D|F5F8D2|LMAN1IP|SDNSF multiple coagulation factor deficiency 2 protein-coding 13-PTNLD9-TUMOR_peak_39396 chr4 139120728 139121002 + 29.21581 NA intron (NM_014331, intron 6 of 11) intron (NM_014331, intron 6 of 11) 42638 NM_014331 23657 Hs.390594 NM_014331 HPRD:09720 SLC7A11 CCBR1|xCT solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11 protein-coding 13-PTNLD9-TUMOR_peak_16033 chr14 65193275 65193572 + 29.21415 NA intron (NM_015549, intron 1 of 14) intron (NM_015549, intron 1 of 14) 22230 NM_015549 26030 Hs.509637 NM_015549 HPRD:17861 PLEKHG3 ARHGEF43|KIAA0599 pleckstrin homology domain containing, family G (with RhoGef domain) member 3 protein-coding 13-PTNLD9-TUMOR_peak_36383 chr3 150187446 150187710 + 29.21268 NA Intergenic Intergenic 60790 NM_014779 9819 Hs.722470 NM_014779 HPRD:11101 TSC22D2 TILZ4a|TILZ4b|TILZ4c TSC22 domain family, member 2 protein-coding 13-PTNLD9-TUMOR_peak_29120 chr2 174517541 174517786 + 29.19041 NA Intergenic Intergenic 298102 NM_145810 83879 Hs.470654 NM_031942 HPRD:09874 CDCA7 JPO1 cell division cycle associated 7 protein-coding 13-PTNLD9-TUMOR_peak_18669 chr16 19010038 19010353 + 29.19041 NA intron (NM_001160364, intron 1 of 15) intron (NM_001160364, intron 1 of 15) 14586 NM_001160364 79905 Hs.187377 NM_024847 HPRD:15517 TMC7 - transmembrane channel-like 7 protein-coding 13-PTNLD9-TUMOR_peak_43556 chr6 3826215 3826760 + 29.18820 NA Intergenic Intergenic -23145 NM_012135 26240 Hs.140944 NM_012135 HPRD:16883 FAM50B D6S2654E|X5L family with sequence similarity 50, member B protein-coding 13-PTNLD9-TUMOR_peak_9236 chr11 18405268 18405691 + 29.17751 NA Intergenic Intergenic -10457 NM_001165416 3939 Hs.2795 NM_005566 HPRD:01025 LDHA GSD11|HEL-S-133P|LDH1|LDHM lactate dehydrogenase A protein-coding 13-PTNLD9-TUMOR_peak_37067 chr3 186478180 186478590 + 29.15879 NA Intergenic MER21A|LTR|ERVL -22976 NM_001967 1974 Hs.518475 NM_001967 HPRD:03062 EIF4A2 BM-010|DDX2B|EIF4A|EIF4F|eIF-4A-II|eIF4A-II eukaryotic translation initiation factor 4A2 protein-coding 13-PTNLD9-TUMOR_peak_32647 chr22 17382699 17382926 + 29.13934 NA Intergenic HERVL-int|LTR|ERVL 74448 NR_003607 27437 Hs.143955 NR_003607 ENSG00000229027 HSFY1P1 CECR8|HSFYL1|HSFYP1|NCRNA00016 heat shock transcription factor, Y-linked 1 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_40827 chr5 50522114 50522503 + 29.13189 NA Intergenic Intergenic -156650 NM_002202 3670 Hs.505 NM_002202 HPRD:02650 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_50427 chr8 27198167 27198477 + 29.13189 NA intron (NM_173174, intron 6 of 35) intron (NM_173174, intron 6 of 35) 15241 NM_173175 2185 Hs.491322 NM_004103 HPRD:03131 PTK2B CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK protein tyrosine kinase 2 beta protein-coding 13-PTNLD9-TUMOR_peak_20545 chr17 16914036 16914572 + 29.11841 NA Intergenic Intergenic -31770 NM_201274 23164 Hs.462341 NM_015134 HPRD:17591 MPRIP M-RIP|MRIP|RHOIP3|RIP3|p116Rip myosin phosphatase Rho interacting protein protein-coding 13-PTNLD9-TUMOR_peak_52085 chr8 131503748 131504233 + 29.11365 NA Intergenic Intergenic -48084 NM_018482 50807 Hs.655552 NM_018482 HPRD:05809 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 13-PTNLD9-TUMOR_peak_36750 chr3 172353411 172353720 + 29.11365 NA intron (NM_020792, intron 4 of 4) intron (NM_020792, intron 4 of 4) 75443 NM_001146278 57552 Hs.444099 NM_020792 HPRD:07489 NCEH1 AADACL1|NCEH neutral cholesterol ester hydrolase 1 protein-coding 13-PTNLD9-TUMOR_peak_7779 chr10 76677292 76677476 + 29.09457 NA intron (NM_001256469, intron 3 of 17) L2c|LINE|L2 91213 NM_012330 23522 Hs.35758 NM_012330 HPRD:07065 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf K(lysine) acetyltransferase 6B protein-coding 13-PTNLD9-TUMOR_peak_1910 chr1 57154218 57154431 + 29.09457 NA intron (NM_006252, intron 2 of 8) L2c|LINE|L2 43334 NM_006252 5563 Hs.437039 NM_006252 HPRD:02735 PRKAA2 AMPK|AMPK2|AMPKa2|PRKAA protein kinase, AMP-activated, alpha 2 catalytic subunit protein-coding 13-PTNLD9-TUMOR_peak_39116 chr4 114389410 114389749 + 29.09147 NA intron (NM_172114, intron 15 of 17) intron (NM_172114, intron 15 of 17) 293504 NM_172127 817 Hs.144114 NM_001221 HPRD:09653 CAMK2D CAMKD calcium/calmodulin-dependent protein kinase II delta protein-coding 13-PTNLD9-TUMOR_peak_43421 chr6 1481611 1481996 + 29.08415 NA Intergenic Intergenic -91157 NR_106778 102466720 NR_106778 MIR6720 hsa-mir-6720 microRNA 6720 ncRNA 13-PTNLD9-TUMOR_peak_37649 chr4 3252374 3253124 + 29.08415 NA intron (NM_001042690, intron 1 of 2) intron (NM_001042690, intron 1 of 2) 1982 NM_001042690 345222 Hs.442291 NM_001012982 MSANTD1 C4orf44 Myb/SANT-like DNA-binding domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_51923 chr8 126618704 126618998 + 29.08415 NA Intergenic L2b|LINE|L2 174400 NM_001282985 10221 Hs.444947 NM_025195 HPRD:09863 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 13-PTNLD9-TUMOR_peak_13623 chr12 104235586 104235966 + 29.06764 NA promoter-TSS (NM_001031701) promoter-TSS (NM_001031701) -801 NM_001031701 51559 Hs.48428 NM_016575 HPRD:18241 NT5DC3 TU12B1-TY|TU12B1TY 5'-nucleotidase domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_45498 chr6 73839777 73840113 + 29.05067 NA intron (NM_001160133, intron 10 of 14) intron (NM_001160133, intron 10 of 14) 13292 NR_046621 100873997 Hs.741819 NR_046621 ENSG00000229154 KCNQ5-AS1 - KCNQ5 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_6409 chr10 6821048 6821417 + 29.04092 NA promoter-TSS (NR_038291) promoter-TSS (NR_038291) -90 NR_108074 100652997 Hs.255086 NR_108074 LINC00706 - long intergenic non-protein coding RNA 706 ncRNA 13-PTNLD9-TUMOR_peak_3672 chr1 152198215 152198523 + 29.03814 NA Intergenic Intergenic -1697 NM_001009931 388697 Hs.490162 NM_001009931 HPRD:17114 HRNR FLG3|S100A16|S100a18 hornerin protein-coding 13-PTNLD9-TUMOR_peak_40041 chr4 186760300 186760597 + 29.03490 NA intron (NM_021069, intron 1 of 20) intron (NM_021069, intron 1 of 20) -27038 NM_003603 8470 Hs.619806 NM_003603 HPRD:12473 SORBS2 ARGBP2|PRO0618 sorbin and SH3 domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_35305 chr3 110295821 110296148 + 29.02375 NA Intergenic LTR16E2|LTR|ERVL 492822 NR_045114 100506555 Hs.535689 NR_045114 PVRL3-AS1 - PVRL3 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_5929 chr1 234936971 234937236 + 29.01600 NA Intergenic Intergenic 77314 NR_038856 100506810 Hs.586634 NR_038856 ENSG00000227630 LINC01132 - long intergenic non-protein coding RNA 1132 ncRNA 13-PTNLD9-TUMOR_peak_7448 chr10 60616346 60616575 + 29.00585 NA Intergenic Intergenic 141685 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 13-PTNLD9-TUMOR_peak_41063 chr5 65070306 65070475 + 28.96931 NA intron (NM_020726, intron 3 of 12) intron (NM_020726, intron 3 of 12) 52367 NM_020726 57486 Hs.247460 NM_020726 HPRD:07495 NLN AGTBP|EP24.16|MEP|MOP neurolysin (metallopeptidase M3 family) protein-coding 13-PTNLD9-TUMOR_peak_36186 chr3 141013845 141014102 + 28.96133 NA TTS (NM_001037172) TTS (NM_001037172) -29082 NM_001080412 253461 Hs.518301 NM_152535 ENSG00000177311 ZBTB38 CIBZ|PPP1R171|ZNF921 zinc finger and BTB domain containing 38 protein-coding 13-PTNLD9-TUMOR_peak_5605 chr1 225637019 225637248 + 28.95723 NA Intergenic Intergenic -20576 NM_194442 3930 Hs.435166 NM_002296 HPRD:02488 LBR DHCR14B|LMN2R|PHA|TDRD18 lamin B receptor protein-coding 13-PTNLD9-TUMOR_peak_28750 chr2 153204992 153205257 + 28.95464 NA intron (NM_052905, intron 1 of 25) L2c|LINE|L2 13373 NM_052905 114793 Hs.654630 NM_052905 HPRD:13545 FMNL2 FHOD2 formin-like 2 protein-coding 13-PTNLD9-TUMOR_peak_2787 chr1 110326083 110326312 + 28.95464 NA Intergenic Intergenic -19553 NM_024526 79574 Hs.485352 NM_024526 HPRD:13277 EPS8L3 EPS8R3 EPS8-like 3 protein-coding 13-PTNLD9-TUMOR_peak_51950 chr8 127600691 127601177 + 28.93833 NA Intergenic Intergenic -30223 NM_174911 157638 Hs.741352 NM_174911 HPRD:11403 FAM84B BCMP101|NSE2 family with sequence similarity 84, member B protein-coding 13-PTNLD9-TUMOR_peak_49046 chr7 129609773 129610120 + 28.90452 NA Intergenic Intergenic -17146 NM_003344 7328 Hs.643548 NM_003344 HPRD:03052 UBE2H E2-20K|GID3|UBC8|UBCH|UBCH2 ubiquitin-conjugating enzyme E2H protein-coding 13-PTNLD9-TUMOR_peak_3568 chr1 150577247 150577474 + 28.89036 NA Intergenic LTR78|LTR|ERV1 24249 NM_207045 2029 Hs.632456 NM_004436 HPRD:11927 ENSA ARPP-19e endosulfine alpha protein-coding 13-PTNLD9-TUMOR_peak_24979 chr19 40762919 40763362 + 28.88734 NA intron (NM_001243028, intron 1 of 12) intron (NM_001243028, intron 1 of 12) 25408 NR_030371 693226 NR_030371 miRBase:MI0003656 MIR641 MIRN641|hsa-mir-641 microRNA 641 ncRNA 13-PTNLD9-TUMOR_peak_32345 chr21 40402468 40402750 + 28.86797 NA Intergenic Intergenic -52909 NR_109962 101928435 Hs.385528 NR_109962 ENSG00000232837 LOC101928435 - uncharacterized LOC101928435 ncRNA 13-PTNLD9-TUMOR_peak_19140 chr16 33448909 33449122 + 28.86379 NA Intergenic Intergenic 114228 NR_046943 100873777 NR_046943 ENSG00000206787 RNU6-76P RNU6-76 RNA, U6 small nuclear 76, pseudogene snRNA 13-PTNLD9-TUMOR_peak_39243 chr4 122706194 122706504 + 28.86379 NA Intergenic Intergenic -16123 NM_005033 5393 Hs.91728 NM_005033 HPRD:07315 EXOSC9 PM/Scl-75|PMSCL1|RRP45|Rrp45p|p5|p6 exosome component 9 protein-coding 13-PTNLD9-TUMOR_peak_26518 chr2 31698592 31698859 + 28.83381 NA Intergenic Intergenic -61114 NM_000379 7498 Hs.250 NM_000379 HPRD:06363 XDH XO|XOR xanthine dehydrogenase protein-coding 13-PTNLD9-TUMOR_peak_3829 chr1 155011015 155011376 + 28.83051 NA intron (NM_152494, intron 4 of 16) L2c|LINE|L2 4913 NM_152494 149095 Hs.567717 NM_152494 HPRD:08733 DCST1 - DC-STAMP domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_51395 chr8 101348343 101348805 + 28.81794 NA promoter-TSS (NM_001280539) promoter-TSS (NM_001280539) -128 NM_001280539 25897 Hs.292882 NM_015435 HPRD:06176 RNF19A RNF19 ring finger protein 19A, RBR E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_28607 chr2 139358769 139359175 + 28.76666 NA Intergenic Intergenic 99622 NM_001001664 339745 Hs.333297 NM_001001664 HPRD:11261 SPOPL BTBD33 speckle-type POZ protein-like protein-coding 13-PTNLD9-TUMOR_peak_41305 chr5 74616810 74617072 + 28.73430 NA Intergenic Intergenic -16052 NM_000859 3156 Hs.628096 NM_000859 HPRD:00836 HMGCR LDLCQ3 3-hydroxy-3-methylglutaryl-CoA reductase protein-coding 13-PTNLD9-TUMOR_peak_16594 chr14 101567903 101568155 + 28.73430 NA Intergenic MLT1C|LTR|ERVL-MaLR 31781 NR_047664 100507257 Hs.301755 NR_047664 ENSG00000223403 MEG9 LINC00584 maternally expressed 9 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_19555 chr16 67022331 67022617 + 28.72837 NA promoter-TSS (NM_173815) promoter-TSS (NM_173815) -18 NM_173815 283848 Hs.346947 NM_173815 HPRD:07116 CES4A CES6|CES8 carboxylesterase 4A protein-coding 13-PTNLD9-TUMOR_peak_48373 chr7 95848721 95849075 + 28.72229 NA TTS (NR_030322) TTS (NR_030322) 170 NR_030322 693176 NR_030322 MIR591 MIRN591|hsa-mir-591 microRNA 591 ncRNA 13-PTNLD9-TUMOR_peak_34402 chr3 45133787 45134156 + 28.69682 NA intron (NM_022842, intron 6 of 8) L3b|LINE|CR1 53943 NM_022842 64866 Hs.476093 NM_022842 HPRD:16696 CDCP1 CD318|SIMA135|TRASK CUB domain containing protein 1 protein-coding 13-PTNLD9-TUMOR_peak_11633 chr11 129699489 129699748 + 28.69095 NA intron (NM_138788, intron 1 of 5) L2c|LINE|L2 13877 NM_138788 120224 Hs.504301 NM_138788 HPRD:14020 TMEM45B - transmembrane protein 45B protein-coding 13-PTNLD9-TUMOR_peak_49519 chr7 143933151 143933529 + 28.67624 NA Intergenic Intergenic -3404 NM_001005287 346528 Hs.528398 NM_001005287 HPRD:14928 OR2A1 - olfactory receptor, family 2, subfamily A, member 1 protein-coding 13-PTNLD9-TUMOR_peak_45583 chr6 81164052 81164328 + 28.66174 NA Intergenic Intergenic 347846 NM_183050 594 Hs.654441 NM_000056 HPRD:02011 BCKDHB E1B|dJ279A18.1 branched chain keto acid dehydrogenase E1, beta polypeptide protein-coding 13-PTNLD9-TUMOR_peak_42596 chr5 149140145 149140481 + 28.66174 NA intron (NM_133263, intron 1 of 11) intron (NM_133263, intron 1 of 11) -11190 NM_001172699 133522 Hs.483816 NM_133263 HPRD:10594 PPARGC1B ERRL1|PERC|PGC-1(beta)|PGC1B peroxisome proliferator-activated receptor gamma, coactivator 1 beta protein-coding 13-PTNLD9-TUMOR_peak_5490 chr1 222927792 222928089 + 28.66174 NA Intergenic MLT1F2|LTR|ERVL-MaLR 17382 NM_207468 400823 Hs.697608 NM_207468 HPRD:16965 FAM177B - family with sequence similarity 177, member B protein-coding 13-PTNLD9-TUMOR_peak_31632 chr20 55129974 55130319 + 28.66174 NA Intergenic Intergenic 21844 NM_001013646 388799 Hs.287759 NM_001013646 HPRD:18388 FAM209B C20orf107|dJ1153D9.4 family with sequence similarity 209, member B protein-coding 13-PTNLD9-TUMOR_peak_50624 chr8 37773415 37773978 + 28.66174 NA Intergenic Intergenic -16681 NM_001002814 80223 Hs.191179 NM_025151 HPRD:09787 RAB11FIP1 NOEL1A|RCP|rab11-FIP1 RAB11 family interacting protein 1 (class I) protein-coding 13-PTNLD9-TUMOR_peak_5131 chr1 204257182 204257705 + 28.65258 NA intron (NM_014935, intron 1 of 22) intron (NM_014935, intron 1 of 22) 71614 NM_014935 22874 Hs.253146 NM_014935 HPRD:09685 PLEKHA6 PEPP-3|PEPP3 pleckstrin homology domain containing, family A member 6 protein-coding 13-PTNLD9-TUMOR_peak_5470 chr1 222013869 222014199 + 28.65258 NA Intergenic Intergenic -98516 NM_007207 11221 Hs.497822 NM_007207 HPRD:12320 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 13-PTNLD9-TUMOR_peak_54715 chr9 125540566 125540861 + 28.62557 NA Intergenic Intergenic -10499 NM_001001923 392391 Hs.534761 NM_001001923 HPRD:15039 OR5C1 OR5C2P|OR9-31|OR9-F olfactory receptor, family 5, subfamily C, member 1 protein-coding 13-PTNLD9-TUMOR_peak_45397 chr6 57178560 57178933 + 28.62065 NA promoter-TSS (NM_001282488) promoter-TSS (NM_001282488) -857 NM_001282488 5558 Hs.654580 NM_000947 PRIM2 PRIM2A|p58 primase, DNA, polypeptide 2 (58kDa) protein-coding 13-PTNLD9-TUMOR_peak_31096 chr20 41196043 41196468 + 28.62065 NA intron (NM_133170, intron 7 of 31) intron (NM_133170, intron 7 of 31) -117868 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 13-PTNLD9-TUMOR_peak_27269 chr2 73316770 73317085 + 28.61256 NA intron (NM_015470, intron 1 of 4) intron (NM_015470, intron 1 of 4) -17962 NM_144579 94097 Hs.368171 NM_144579 HPRD:18047 SFXN5 BBG-TCC sideroflexin 5 protein-coding 13-PTNLD9-TUMOR_peak_48184 chr7 83314341 83314589 + 28.58743 NA Intergenic Intergenic -35986 NM_012431 9723 Hs.528721 NM_012431 HPRD:11545 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E protein-coding 13-PTNLD9-TUMOR_peak_44000 chr6 18023127 18023389 + 28.58743 NA Intergenic Intergenic -35404 NM_001243423 63971 Hs.94499 NM_022113 HPRD:09256 KIF13A RBKIN|bA500C11.2 kinesin family member 13A protein-coding 13-PTNLD9-TUMOR_peak_36327 chr3 149057817 149058012 + 28.58743 NA Intergenic Intergenic -6366 NM_138786 116441 Hs.22026 NM_138786 HPRD:14018 TM4SF18 L6D transmembrane 4 L six family member 18 protein-coding 13-PTNLD9-TUMOR_peak_36513 chr3 156846070 156846472 + 28.58268 NA Intergenic Intergenic -5480 NR_034007 339894 Hs.478050 NR_034007 ENSG00000243629 LINC00880 - long intergenic non-protein coding RNA 880 ncRNA 13-PTNLD9-TUMOR_peak_46827 chr7 6433004 6433270 + 28.57093 NA intron (NM_006908, intron 3 of 5) intron (NM_006908, intron 3 of 5) 19011 NM_018890 5879 Hs.413812 NM_006908 HPRD:03627 RAC1 Rac-1|TC-25|p21-Rac1 ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1) protein-coding 13-PTNLD9-TUMOR_peak_6900 chr10 33526910 33527187 + 28.54422 NA intron (NM_001024628, intron 6 of 11) intron (NM_001024628, intron 6 of 11) 96785 NM_003873 8829 Hs.131704 NM_003873 HPRD:03642 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 13-PTNLD9-TUMOR_peak_45345 chr6 53630144 53630424 + 28.52710 NA Intergenic Intergenic -29494 NM_018214 55227 Hs.606493 NM_018214 ENSG00000137269 LRRC1 LANO|dJ523E19.1 leucine rich repeat containing 1 protein-coding 13-PTNLD9-TUMOR_peak_32986 chr22 25404650 25405011 + 28.51452 NA Intergenic Intergenic -19111 NM_001145206 85379 Hs.419171 NM_001145206 ENSG00000197077 KIAA1671 - KIAA1671 protein-coding 13-PTNLD9-TUMOR_peak_10515 chr11 71367785 71367971 + 28.51452 NA Intergenic Intergenic -73957 NM_001005405 440051 Hs.679617 NM_001005405 HPRD:17248 KRTAP5-11 KRTAP5-5|KRTAP5-6|KRTAP5.11 keratin associated protein 5-11 protein-coding 13-PTNLD9-TUMOR_peak_31580 chr20 52516024 52516442 + 28.51446 NA Intergenic Intergenic -23985 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_1962 chr1 59616725 59617107 + 28.51446 NA Intergenic Intergenic -4437 NR_027120 729467 Hs.662291 NR_027120 ENSG00000224609 HSD52 - uncharacterized LOC729467 ncRNA 13-PTNLD9-TUMOR_peak_45248 chr6 47667837 47668155 + 28.50922 NA intron (NM_153838, intron 1 of 9) intron (NM_153838, intron 1 of 9) 1707 NM_153838 221393 Hs.150131 NM_153838 HPRD:17057 GPR115 PGR18 G protein-coupled receptor 115 protein-coding 13-PTNLD9-TUMOR_peak_52440 chr8 144629440 144629715 + 28.48244 NA Intergenic MER41B|LTR|ERV1 -5957 NM_015117 23144 Hs.521915 NM_015117 HPRD:15697 ZC3H3 ZC3HDC3 zinc finger CCCH-type containing 3 protein-coding 13-PTNLD9-TUMOR_peak_35647 chr3 124579555 124579796 + 28.45544 NA intron (NM_002213, intron 2 of 14) intron (NM_002213, intron 2 of 14) 26469 NM_002213 3693 Hs.536663 NM_002213 HPRD:00949 ITGB5 - integrin, beta 5 protein-coding 13-PTNLD9-TUMOR_peak_32477 chr21 44727004 44727369 + 28.44526 NA Intergenic Intergenic 24733 NR_103713 100126693 Hs.473952 NR_103713 LINC00322 C21orf136|NCRNA00322 long intergenic non-protein coding RNA 322 ncRNA 13-PTNLD9-TUMOR_peak_38173 chr4 37473668 37473922 + 28.44302 NA intron (NM_001104629, intron 1 of 3) intron (NM_001104629, intron 1 of 3) 18243 NM_001104629 55286 Hs.107527 NM_018302 HPRD:07725 C4orf19 - chromosome 4 open reading frame 19 protein-coding 13-PTNLD9-TUMOR_peak_16087 chr14 68591640 68592222 + 28.43109 NA intron (NM_133510, intron 7 of 10) intron (NM_133510, intron 7 of 10) 305435 NM_133510 5890 Hs.172587 NM_002877 HPRD:04255 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 13-PTNLD9-TUMOR_peak_49049 chr7 129650194 129650525 + 28.42386 NA Intergenic Intergenic 40932 NM_001282190 51530 Hs.194157 NM_016478 ENSG00000091732 ZC3HC1 NIPA zinc finger, C3HC-type containing 1 protein-coding 13-PTNLD9-TUMOR_peak_3336 chr1 145728402 145728845 + 28.42337 NA intron (NM_001201326, intron 1 of 6) intron (NM_001201326, intron 1 of 6) 957 NM_001201326 5174 Hs.444751 NM_002614 HPRD:04829 PDZK1 CAP70|CLAMP|NHERF-3|NHERF3|PDZD1 PDZ domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_44594 chr6 32003464 32003754 + 28.42169 NA TTS (NM_001252204) TTS (NM_001252204) -2484 NM_000500 1589 Hs.654479 NM_000500 HPRD:01942 CYP21A2 CA21H|CAH1|CPS1|CYP21|CYP21B|P450c21B cytochrome P450, family 21, subfamily A, polypeptide 2 protein-coding 13-PTNLD9-TUMOR_peak_42428 chr5 142060542 142060738 + 28.40207 NA intron (NM_001144935, intron 1 of 3) intron (NM_001144935, intron 1 of 3) 4628 NM_001257209 2246 Hs.483635 NM_000800 HPRD:00567 FGF1 AFGF|ECGF|ECGF-beta|ECGFA|ECGFB|FGF-1|FGF-alpha|FGFA|GLIO703|HBGF-1|HBGF1 fibroblast growth factor 1 (acidic) protein-coding 13-PTNLD9-TUMOR_peak_1541 chr1 45033862 45034081 + 28.36935 NA intron (NM_018150, intron 2 of 14) L2a|LINE|L2 22806 NR_049849 100847089 NR_049849 MIR5584 - microRNA 5584 ncRNA 13-PTNLD9-TUMOR_peak_32286 chr21 38711258 38711627 + 28.36603 NA Intergenic Intergenic -28417 NM_101395 1859 Hs.368240 NM_001396 HPRD:09018 DYRK1A DYRK|DYRK1|HP86|MNB|MNBH|MRD7 dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A protein-coding 13-PTNLD9-TUMOR_peak_45214 chr6 46843919 46844335 + 28.33730 NA intron (NM_015234, intron 10 of 20) intron (NM_015234, intron 10 of 20) -27081 NR_110658 101926962 Hs.680113 NR_110658 LOC101926962 - uncharacterized LOC101926962 ncRNA 13-PTNLD9-TUMOR_peak_38286 chr4 48911730 48911976 + 28.33730 NA Intergenic Intergenic -3008 NM_001286774 132299 Hs.95835 NM_152398 HPRD:14873 OCIAD2 - OCIA domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_38625 chr4 77380448 77380853 + 28.33730 NA intron (NM_020859, intron 1 of 10) intron (NM_020859, intron 1 of 10) 24397 NM_020859 57619 Hs.702168 NM_020859 HPRD:07053 SHROOM3 APXL3|SHRM|ShrmL shroom family member 3 protein-coding 13-PTNLD9-TUMOR_peak_35756 chr3 126857456 126857837 + 28.33675 NA Intergenic Intergenic -54328 NM_001007534 285311 Hs.591284 NM_001007534 HPRD:16949 C3orf56 - chromosome 3 open reading frame 56 protein-coding 13-PTNLD9-TUMOR_peak_16462 chr14 92970115 92970713 + 28.30847 NA Intergenic Intergenic -9711 NM_024832 79890 Hs.326822 NM_024832 HPRD:11494 RIN3 - Ras and Rab interactor 3 protein-coding 13-PTNLD9-TUMOR_peak_51660 chr8 117467786 117468036 + 28.30847 NA Intergenic Intergenic -130614 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 13-PTNLD9-TUMOR_peak_53486 chr9 69655019 69655256 + 28.30372 NA intron (NR_024443, intron 2 of 3) intron (NR_024443, intron 2 of 3) 3776 NR_024443 100133920 Hs.645503 NR_024443 LOC100133920 - uncharacterized LOC100133920 ncRNA 13-PTNLD9-TUMOR_peak_37877 chr4 8200791 8201184 + 28.30091 NA promoter-TSS (NM_018986) promoter-TSS (NM_018986) -73 NM_018986 54436 Hs.479116 NM_018986 HPRD:11556 SH3TC1 - SH3 domain and tetratricopeptide repeats 1 protein-coding 13-PTNLD9-TUMOR_peak_32482 chr21 44816737 44816989 + 28.29612 NA Intergenic Intergenic 30139 NM_173354 150094 Hs.282113 NM_173354 HPRD:09301 SIK1 MSK|SIK|SNF1LK salt-inducible kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_19073 chr16 31397505 31398243 + 28.27577 NA Intergenic Charlie25|DNA|hAT-Charlie -6759 NM_005353 3681 Hs.679163 NM_005353 ENSG00000156886 ITGAD ADB2|CD11D integrin, alpha D protein-coding 13-PTNLD9-TUMOR_peak_36844 chr3 178200888 178201157 + 28.26025 NA Intergenic Intergenic -53064 NM_181361 10242 Hs.478368 NM_005832 HPRD:05557 KCNMB2 - potassium large conductance calcium-activated channel, subfamily M, beta member 2 protein-coding 13-PTNLD9-TUMOR_peak_9975 chr11 60843432 60843660 + 28.26025 NA Intergenic MIRb|SINE|MIR -26384 NM_014207 921 Hs.58685 NM_014207 HPRD:01078 CD5 LEU1|T1 CD5 molecule protein-coding 13-PTNLD9-TUMOR_peak_24274 chr19 16441301 16441592 + 28.25663 NA Intergenic Intergenic 5795 NM_016270 10365 Hs.744182 NM_016270 HPRD:03602 KLF2 LKLF Kruppel-like factor 2 protein-coding 13-PTNLD9-TUMOR_peak_44856 chr6 37105300 37105619 + 28.23504 NA Intergenic Intergenic -32463 NM_002648 5292 Hs.81170 NM_002648 HPRD:01292 PIM1 PIM Pim-1 proto-oncogene, serine/threonine kinase protein-coding 13-PTNLD9-TUMOR_peak_48979 chr7 128165762 128166013 + 28.23096 NA Intergenic Intergenic 49104 NM_018396 55798 Hs.433213 NM_018396 HPRD:09705 METTL2B METL|METTL2|METTL2A|PSENIP1 methyltransferase like 2B protein-coding 13-PTNLD9-TUMOR_peak_5968 chr1 235567500 235567897 + 28.21729 NA intron (NM_001079515, intron 3 of 16) FLAM_A|SINE|Alu 37023 NM_001079515 6905 Hs.744998 NM_003193 HPRD:05381 TBCE HRD|KCS|KCS1|pac2 tubulin folding cofactor E protein-coding 13-PTNLD9-TUMOR_peak_4821 chr1 192458944 192459236 + 28.21606 NA Intergenic Intergenic -85767 NM_002922 5996 Hs.75256 NM_002922 HPRD:15968 RGS1 1R20|BL34|HEL-S-87|IER1|IR20 regulator of G-protein signaling 1 protein-coding 13-PTNLD9-TUMOR_peak_37203 chr3 189983624 189983988 + 28.18925 NA Intergenic Intergenic 56429 NM_021101 9076 Hs.439060 NM_021101 HPRD:04760 CLDN1 CLD1|ILVASC|SEMP1 claudin 1 protein-coding 13-PTNLD9-TUMOR_peak_26162 chr2 12647506 12647776 + 28.18925 NA intron (NR_110196, intron 4 of 5) intron (NR_110196, intron 4 of 5) -209357 NR_027303 28951 Hs.467751 NM_021643 HPRD:18224 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 13-PTNLD9-TUMOR_peak_9317 chr11 22488356 22488726 + 28.18382 NA intron (NR_120583, intron 3 of 3) intron (NR_120583, intron 3 of 3) 25024 NR_120583 102723378 Hs.374255 NR_120583 LINC01495 - long intergenic non-protein coding RNA 1495 ncRNA 13-PTNLD9-TUMOR_peak_10870 chr11 88288193 88288536 + 28.18382 NA intron (NM_001143831, intron 7 of 8) intron (NM_001143831, intron 7 of 8) 50620 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_51099 chr8 68293250 68293512 + 28.15699 NA Intergenic LTR85a|LTR|Gypsy? -37469 NM_006421 10565 Hs.656902 NM_006421 HPRD:09163 ARFGEF1 ARFGEP1|BIG1|P200 ADP-ribosylation factor guanine nucleotide-exchange factor 1 (brefeldin A-inhibited) protein-coding 13-PTNLD9-TUMOR_peak_56735 chrX 153863175 153863605 + 28.15397 NA Intergenic MER67B|LTR|ERV1 -1942 NR_027402 286967 Hs.391764 NM_173168 FAM223B CXorf52|CXorf52B|LINC00204B|NCRNA00204B family with sequence similarity 223, member B (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_56729 chrX 153797323 153797753 + 28.15397 NA Intergenic MER67B|LTR|ERV1 -1941 NR_027402 286967 Hs.391764 NM_173168 FAM223B CXorf52|CXorf52B|LINC00204B|NCRNA00204B family with sequence similarity 223, member B (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_35314 chr3 111300988 111301213 + 28.12165 NA intron (NM_198196, intron 5 of 14) intron (NM_198196, intron 5 of 14) 13082 NM_024508 79413 Hs.136912 NM_024508 HPRD:15686 ZBED2 - zinc finger, BED-type containing 2 protein-coding 13-PTNLD9-TUMOR_peak_3029 chr1 117753425 117753713 + 28.10911 NA promoter-TSS (NM_024626) promoter-TSS (NM_024626) 13 NR_045603 79679 Hs.546434 NM_024626 HPRD:06429 VTCN1 B7-H4|B7H4|B7S1|B7X|B7h.5|PRO1291|VCTN1 V-set domain containing T cell activation inhibitor 1 protein-coding 13-PTNLD9-TUMOR_peak_32562 chr21 46432184 46432588 + 28.10911 NA Intergenic MLT1D|LTR|ERVL-MaLR -7744 NR_024089 378825 Hs.534828 NR_024089 ENSG00000224930 LINC00162 C21orf113|NCRNA00162|NLC1-C|NLC1C|PRED74 long intergenic non-protein coding RNA 162 ncRNA 13-PTNLD9-TUMOR_peak_26713 chr2 43313676 43313998 + 28.10810 NA Intergenic Intergenic -47155 NR_110585 102723854 Hs.570165 NR_110585 LOC102723854 - uncharacterized LOC102723854 ncRNA 13-PTNLD9-TUMOR_peak_2074 chr1 64808957 64809659 + 28.09686 NA Intergenic Intergenic -127168 NM_020925 57685 Hs.443891 NM_020925 HPRD:13874 CACHD1 - cache domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_47881 chr7 73129974 73130303 + 28.06567 NA intron (NM_004603, intron 1 of 9) intron (NM_004603, intron 1 of 9) 3879 NM_001165903 6804 Hs.647024 NM_004603 HPRD:01721 STX1A HPC-1|P35-1|STX1|SYN1A syntaxin 1A (brain) protein-coding 13-PTNLD9-TUMOR_peak_36802 chr3 177012054 177012429 + 28.06426 NA promoter-TSS (NR_047465) promoter-TSS (NR_047465) 11 NR_047465 100820709 Hs.518409 NR_047465 LINC00501 - long intergenic non-protein coding RNA 501 ncRNA 13-PTNLD9-TUMOR_peak_6155 chr1 245879325 245879633 + 28.04127 NA Intergenic Intergenic 561192 NM_018012 55083 Hs.368096 NM_018012 ENSG00000162849 KIF26B - kinesin family member 26B protein-coding 13-PTNLD9-TUMOR_peak_53669 chr9 77844885 77845213 + 28.03677 NA Intergenic LTR18A|LTR|ERVL 141651 NM_012383 26578 Hs.494192 NM_012383 HPRD:17808 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 13-PTNLD9-TUMOR_peak_13317 chr12 71138017 71138321 + 28.03677 NA intron (NM_001207015, intron 5 of 12) intron (NM_001207015, intron 5 of 12) 10219 NR_073474 5801 Hs.506076 NM_002849 HPRD:04169 PTPRR EC-PTP|PCPTP1|PTP-SL|PTPBR7|PTPRQ protein tyrosine phosphatase, receptor type, R protein-coding 13-PTNLD9-TUMOR_peak_13268 chr12 69418265 69418524 + 28.03677 NA Intergenic Intergenic -61374 NM_001874 1368 Hs.654387 NM_001874 HPRD:00273 CPM - carboxypeptidase M protein-coding 13-PTNLD9-TUMOR_peak_34008 chr3 18336601 18336967 + 28.03437 NA Intergenic L1MA4A|LINE|L1 130045 NM_002971 6304 Hs.517717 NM_002971 HPRD:03647 SATB1 - SATB homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_553 chr1 17107563 17107830 + 28.02066 NA Intergenic Intergenic -16721 NM_001271733 11223 Hs.349110 NM_001271733 MST1L BRF-1|D1F15S1A|MSPL-7|MSPL7|MST1P9|MSTP7|MSTP9 macrophage stimulating 1-like protein-coding 13-PTNLD9-TUMOR_peak_21598 chr17 56026013 56026451 + 28.02066 NA intron (NM_001271875, intron 1 of 10) intron (NM_001271875, intron 1 of 10) 6452 NM_001271875 404093 Hs.46679 NM_001271875 HPRD:13098 CUEDC1 - CUE domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_11206 chr11 111831671 111832011 + 28.01702 NA intron (NM_001037954, intron 1 of 19) MER5A1|DNA|hAT-Charlie -16192 NM_033425 85458 Hs.655626 NM_033425 HPRD:16804 DIXDC1 CCD1 DIX domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_37660 chr4 3438728 3438982 + 28.01702 NA intron (NM_198227, intron 15 of 15) intron (NM_198227, intron 15 of 15) -4805 NM_001297439 3083 Hs.104 NM_001528 HPRD:05184 HGFAC HGFA HGF activator protein-coding 13-PTNLD9-TUMOR_peak_19376 chr16 54691301 54691525 + 28.01702 NA Intergenic MLT1K|LTR|ERVL-MaLR 271277 NR_034106 643911 Hs.237396 NR_034105 CRNDE LINC00180|NCRNA00180 colorectal neoplasia differentially expressed (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_11104 chr11 106239502 106239803 + 28.01702 NA Intergenic Intergenic 117518 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 13-PTNLD9-TUMOR_peak_39039 chr4 108817300 108817683 + 28.01295 NA intron (NM_152621, intron 2 of 5) intron (NM_152621, intron 2 of 5) 3071 NM_001136257 166929 Hs.595423 NM_152621 HPRD:11323 SGMS2 SMS2 sphingomyelin synthase 2 protein-coding 13-PTNLD9-TUMOR_peak_21715 chr17 60897277 60897515 + 28.01295 NA intron (NR_036146, intron 3 of 3) intron (NR_036146, intron 3 of 3) -11654 NM_152598 162333 Hs.665663 NM_152598 HPRD:08762 MARCH10 MARCH-X|RNF190 membrane-associated ring finger (C3HC4) 10, E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_16111 chr14 68987752 68988123 + 27.99444 NA intron (NM_133509, intron 10 of 10) intron (NM_133509, intron 10 of 10) 272694 NM_004926 677 Hs.85155 NM_004926 HPRD:03041 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein-like 1 protein-coding 13-PTNLD9-TUMOR_peak_13767 chr12 109227092 109227413 + 27.97859 NA intron (NM_001161330, intron 2 of 13) intron (NM_001161330, intron 2 of 13) -5925 NM_001161331 54434 Hs.199763 NM_018984 HPRD:09486 SSH1 SSH1L slingshot protein phosphatase 1 protein-coding 13-PTNLD9-TUMOR_peak_49383 chr7 140271631 140271814 + 27.97552 NA intron (NM_015689, intron 4 of 17) intron (NM_015689, intron 4 of 17) 30620 NM_015689 27147 Hs.6385 NM_015689 HPRD:17210 DENND2A FAM31D|KIAA1277 DENN/MADD domain containing 2A protein-coding 13-PTNLD9-TUMOR_peak_5665 chr1 227015839 227016027 + 27.95675 NA Intergenic Intergenic -42340 NM_012486 5664 Hs.25363 NM_000447 HPRD:02860 PSEN2 AD3L|AD4|CMD1V|PS2|STM2 presenilin 2 protein-coding 13-PTNLD9-TUMOR_peak_56629 chrX 151071788 151072044 + 27.95675 NA Intergenic Intergenic -9445 NM_001011548 4103 Hs.37107 NM_002362 HPRD:02167 MAGEA4 CT1.4|MAGE-41|MAGE-X2|MAGE4|MAGE4A|MAGE4B melanoma antigen family A, 4 protein-coding 13-PTNLD9-TUMOR_peak_37416 chr3 195862791 195863300 + 27.95253 NA Intergenic MIRb|SINE|MIR -6462 NR_034088 401109 Hs.280133 NM_001001699 HPRD:16924 LINC00885 - long intergenic non-protein coding RNA 885 ncRNA 13-PTNLD9-TUMOR_peak_37829 chr4 7360125 7360382 + 27.93153 NA intron (NM_020777, intron 1 of 26) intron (NM_020777, intron 1 of 26) 48076 NR_039961 100616471 NR_039961 MIR4798 - microRNA 4798 ncRNA 13-PTNLD9-TUMOR_peak_6479 chr10 11940254 11940813 + 27.90985 NA Intergenic Intergenic -3824 NR_038222 219731 Hs.576787 NR_038222 ENSG00000225778 PROSER2-AS1 - PROSER2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_44591 chr6 31970728 31971017 + 27.90596 NA TTS (NM_001252204).6 TTS (NM_001252204).6 -2487 NM_000500 1589 Hs.654479 NM_000500 HPRD:01942 CYP21A2 CA21H|CAH1|CPS1|CYP21|CYP21B|P450c21B cytochrome P450, family 21, subfamily A, polypeptide 2 protein-coding 13-PTNLD9-TUMOR_peak_23014 chr18 42295228 42295509 + 27.88452 NA intron (NM_001130110, intron 2 of 3) intron (NM_001130110, intron 2 of 3) 34505 NM_015559 26040 Hs.435458 NM_015559 HPRD:10224 SETBP1 SEB SET binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_2101 chr1 66727941 66728215 + 27.87916 NA intron (NM_001297440, intron 5 of 15) MIRc|SINE|MIR -69713 NM_001037339 5142 Hs.198072 NM_002600 HPRD:02528 PDE4B DPDE4|PDEIVB phosphodiesterase 4B, cAMP-specific protein-coding 13-PTNLD9-TUMOR_peak_40588 chr5 34674316 34674622 + 27.87669 NA intron (NM_001145520, intron 1 of 17) intron (NM_001145520, intron 1 of 17) -10143 NM_001145521 26064 Hs.431400 NM_015577 HPRD:09416 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 13-PTNLD9-TUMOR_peak_43983 chr6 17589667 17589965 + 27.87258 NA Intergenic Intergenic -10702 NM_016255 51439 Hs.95260 NM_016255 HPRD:13316 FAM8A1 AHCP family with sequence similarity 8, member A1 protein-coding 13-PTNLD9-TUMOR_peak_1348 chr1 41743390 41743616 + 27.87258 NA Intergenic Intergenic -35688 NM_001172219 22955 Hs.571874 NM_012236 HPRD:11540 SCMH1 Scml3 sex comb on midleg homolog 1 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_47835 chr7 72147777 72148071 + 27.87258 NA intron (NM_001145440, intron 12 of 14) L1MC1|LINE|L1 -14950 NR_039794 100616331 NR_039794 miRBase:MI0017278 MIR4650-2 - microRNA 4650-2 ncRNA 13-PTNLD9-TUMOR_peak_53696 chr9 79302957 79303300 + 27.87258 NA intron (NM_015225, intron 9 of 18) intron (NM_015225, intron 9 of 18) -76226 NR_015342 50652 Hs.663766 NR_015342 ENSG00000225937 PCA3 DD3|NCRNA00019|PCAT3 prostate cancer associated 3 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_36502 chr3 156544512 156544779 + 27.86183 NA 5' UTR (NM_001193283, exon 1 of 5) 5' UTR (NM_001193283, exon 1 of 5) 497 NM_001193283 389170 Hs.478048 NM_001004316 HPRD:16915 LEKR1 - leucine, glutamate and lysine rich 1 protein-coding 13-PTNLD9-TUMOR_peak_16829 chr15 26129050 26129404 + 27.81006 NA Intergenic Intergenic -18280 NR_040082 100128714 Hs.587854 NR_040082 ENSG00000206187 LOC100128714 - uncharacterized LOC100128714 ncRNA 13-PTNLD9-TUMOR_peak_47811 chr7 70064072 70064263 + 27.79771 NA intron (NM_001127231, intron 5 of 17) intron (NM_001127231, intron 5 of 17) -533356 NM_022479 64409 Hs.488591 NM_022479 HPRD:15655 WBSCR17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T5L Williams-Beuren syndrome chromosome region 17 protein-coding 13-PTNLD9-TUMOR_peak_21847 chr17 65525237 65525430 + 27.79578 NA intron (NM_181671, intron 1 of 9) intron (NM_181671, intron 1 of 9) 151936 NM_012417 26207 Hs.591185 NM_012417 HPRD:05504 PITPNC1 M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1 phosphatidylinositol transfer protein, cytoplasmic 1 protein-coding 13-PTNLD9-TUMOR_peak_37240 chr3 191772755 191773047 + 27.78781 NA Intergenic L2|LINE|L2 -183518 NR_046596 100873986 Hs.581652 NR_046596 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_15297 chr14 23083084 23083723 + 27.78708 NA Intergenic Intergenic 16256 NM_022060 63874 Hs.445665 NM_022060 HPRD:12406 ABHD4 ABH4 abhydrolase domain containing 4 protein-coding 13-PTNLD9-TUMOR_peak_36554 chr3 158464663 158465121 + 27.77851 NA Intergenic MER5A|DNA|hAT-Charlie -14617 NM_206963 5918 Hs.131269 NM_002888 HPRD:05477 RARRES1 LXNL|TIG1 retinoic acid receptor responder (tazarotene induced) 1 protein-coding 13-PTNLD9-TUMOR_peak_51504 chr8 104117456 104117847 + 27.77851 NA Intergenic Intergenic -35270 NM_024812 79870 Hs.533446 NM_024812 HPRD:09422 BAALC - brain and acute leukemia, cytoplasmic protein-coding 13-PTNLD9-TUMOR_peak_5116 chr1 203738676 203738864 + 27.76078 NA promoter-TSS (NM_001282878) promoter-TSS (NM_001282878) 4 NM_001282878 54900 Hs.272794 NM_017773 HPRD:08312 LAX1 LAX lymphocyte transmembrane adaptor 1 protein-coding 13-PTNLD9-TUMOR_peak_1019 chr1 33458052 33458356 + 27.74905 NA Intergenic Intergenic -27790 NM_001127361 127544 Hs.591504 NM_153341 HPRD:13725 RNF19B IBRDC3|NKLAM ring finger protein 19B protein-coding 13-PTNLD9-TUMOR_peak_5473 chr1 222060484 222060907 + 27.74381 NA Intergenic Intergenic -145177 NM_007207 11221 Hs.497822 NM_007207 HPRD:12320 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 13-PTNLD9-TUMOR_peak_10328 chr11 66829870 66830307 + 27.73647 NA intron (NM_001300886, intron 1 of 2) intron (NM_001300886, intron 1 of 2) 5799 NM_001300886 29984 Hs.15114 NM_014578 HPRD:05776 RHOD ARHD|RHOHP1|RHOM|Rho ras homolog family member D protein-coding 13-PTNLD9-TUMOR_peak_5614 chr1 225887890 225888327 + 27.73647 NA Intergenic Intergenic -47263 NM_018212 55740 Hs.497893 NM_018212 HPRD:12360 ENAH ENA|MENA|NDPP1 enabled homolog (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_44850 chr6 37061076 37061577 + 27.73376 NA Intergenic Intergenic -76596 NM_002648 5292 Hs.81170 NM_002648 HPRD:01292 PIM1 PIM Pim-1 proto-oncogene, serine/threonine kinase protein-coding 13-PTNLD9-TUMOR_peak_50537 chr8 30397562 30397825 + 27.72338 NA intron (NM_001008712, intron 5 of 6) L2b|LINE|L2 -98424 NM_001206847 100507341 Hs.659493 NM_001206847 ENSG00000253457 SMIM18 - small integral membrane protein 18 protein-coding 13-PTNLD9-TUMOR_peak_49088 chr7 130606178 130606521 + 27.71157 NA non-coding (NR_109780, exon 4 of 4) non-coding (NR_109780, exon 4 of 4) 8126 NR_109780 100506860 Hs.635013 NR_109780 LOC100506860 - uncharacterized LOC100506860 ncRNA 13-PTNLD9-TUMOR_peak_44500 chr6 30972006 30972455 + 27.70377 NA Intergenic Intergenic -1499 NM_001198815 100507679 Hs.582967 NM_001198815 ENSG00000261272 MUC22 PBMUCL1 mucin 22 protein-coding 13-PTNLD9-TUMOR_peak_4728 chr1 183971341 183971618 + 27.69731 NA intron (NM_015101, intron 1 of 11) intron (NM_015101, intron 1 of 11) 35384 NM_015101 23127 Hs.387995 NM_015101 HPRD:13583 COLGALT2 C1orf17|GLT25D2 collagen beta(1-O)galactosyltransferase 2 protein-coding 13-PTNLD9-TUMOR_peak_40280 chr5 9654009 9654183 + 27.67332 NA intron (NR_027112, intron 11 of 12) intron (NR_027112, intron 11 of 12) -23633 NM_019599 50834 Hs.567492 NM_019599 HPRD:07267 TAS2R1 T2R1|TRB7 taste receptor, type 2, member 1 protein-coding 13-PTNLD9-TUMOR_peak_18250 chr16 2435531 2435809 + 27.67332 NA intron (NR_003574, intron 7 of 16) MER21C|LTR|ERVL -43725 NM_001761 899 Hs.1973 NM_001761 HPRD:02574 CCNF FBX1|FBXO1 cyclin F protein-coding 13-PTNLD9-TUMOR_peak_9275 chr11 19520742 19521161 + 27.66528 NA intron (NM_001111018, intron 1 of 37) intron (NM_001111018, intron 1 of 37) 7825 NR_049725 100874012 Hs.434602 NR_049725 ENSG00000255043 NAV2-AS5 - NAV2 antisense RNA 5 ncRNA 13-PTNLD9-TUMOR_peak_29050 chr2 171595585 171595942 + 27.66528 NA intron (NR_110185, intron 1 of 5) L2a|LINE|L2 23906 NM_001003845 389058 Hs.368802 NM_001003845 HPRD:18088 SP5 - Sp5 transcription factor protein-coding 13-PTNLD9-TUMOR_peak_31478 chr20 49596611 49597060 + 27.64895 NA Intergenic Intergenic 21484 NM_014484 27304 Hs.159410 NM_014484 HPRD:10092 MOCS3 UBA4 molybdenum cofactor synthesis 3 protein-coding 13-PTNLD9-TUMOR_peak_5128 chr1 204167887 204168114 + 27.64066 NA intron (NM_198447, intron 4 of 4) intron (NM_198447, intron 4 of 4) -2381 NM_002256 3814 Hs.95008 NM_002256 HPRD:04475 KISS1 HH13|KiSS-1 KiSS-1 metastasis-suppressor protein-coding 13-PTNLD9-TUMOR_peak_1595 chr1 46056412 46056674 + 27.62836 NA intron (NM_001195193, intron 1 of 12) intron (NM_001195193, intron 1 of 12) 6883 NM_002482 4678 Hs.319334 NM_002482 HPRD:04423 NASP FLB7527|PRO1999 nuclear autoantigenic sperm protein (histone-binding) protein-coding 13-PTNLD9-TUMOR_peak_32721 chr22 19108388 19108665 + 27.62219 NA intron (NM_005137, intron 1 of 9) intron (NM_005137, intron 1 of 9) 1441 NR_033674 9993 Hs.517357 NM_005137 HPRD:08999 DGCR2 DGS-C|IDD|LAN|SEZ-12 DiGeorge syndrome critical region gene 2 protein-coding 13-PTNLD9-TUMOR_peak_44033 chr6 19538329 19538759 + 27.61681 NA Intergenic Intergenic -299057 NM_001546 3400 Hs.519601 NM_001546 ID4 IDB4|bHLHb27 inhibitor of DNA binding 4, dominant negative helix-loop-helix protein protein-coding 13-PTNLD9-TUMOR_peak_47318 chr7 43204420 43204617 + 27.60702 NA intron (NM_015052, intron 2 of 29) intron (NM_015052, intron 2 of 29) 14024 NR_037508 100500829 NR_037508 MIR3943 - microRNA 3943 ncRNA 13-PTNLD9-TUMOR_peak_1048 chr1 34495386 34495657 + 27.60702 NA intron (NM_052896, intron 3 of 69) intron (NM_052896, intron 3 of 69) 135354 NM_001281956 114784 Hs.656915 NM_052896 HPRD:13094 CSMD2 dJ1007G16.1|dJ1007G16.2|dJ947L8.1 CUB and Sushi multiple domains 2 protein-coding 13-PTNLD9-TUMOR_peak_2515 chr1 94203727 94204242 + 27.59957 NA intron (NM_001261408, intron 2 of 13) intron (NM_001261408, intron 2 of 13) -56590 NM_003567 8412 Hs.36958 NM_003567 HPRD:05268 BCAR3 NSP2|SH2D3B breast cancer anti-estrogen resistance 3 protein-coding 13-PTNLD9-TUMOR_peak_12060 chr12 8081087 8081335 + 27.59687 NA intron (NM_006931, intron 6 of 9) intron (NM_006931, intron 6 of 9) 7681 NM_006931 6515 Hs.419240 NM_006931 HPRD:00686 SLC2A3 GLUT3 solute carrier family 2 (facilitated glucose transporter), member 3 protein-coding 13-PTNLD9-TUMOR_peak_45280 chr6 52217203 52217667 + 27.59073 NA Intergenic Intergenic -9491 NM_133367 85315 Hs.239388 NM_133367 HPRD:07415 PAQR8 C6orf33|LMPB1|MPRB progestin and adipoQ receptor family member VIII protein-coding 13-PTNLD9-TUMOR_peak_25224 chr19 47625718 47625884 + 27.59073 NA Intergenic Intergenic -8279 NM_005500 10055 Hs.515500 NM_005500 HPRD:18010 SAE1 AOS1|HSPC140|SUA1|UBLE1A SUMO1 activating enzyme subunit 1 protein-coding 13-PTNLD9-TUMOR_peak_13715 chr12 107594289 107594517 + 27.56734 NA Intergenic MamRep1894|DNA|hAT -106768 NM_004075 1407 Hs.151573 NM_004075 HPRD:09050 CRY1 PHLL1 cryptochrome circadian clock 1 protein-coding 13-PTNLD9-TUMOR_peak_35941 chr3 131944412 131944850 + 27.56730 NA Intergenic Tigger3b|DNA|TcMar-Tigger -91580 NM_001099 55 Hs.433060 NM_001099 HPRD:01378 ACPP 5'-NT|ACP-3|ACP3 acid phosphatase, prostate protein-coding 13-PTNLD9-TUMOR_peak_3667 chr1 152140373 152140857 + 27.56730 NA Intergenic Intergenic -8911 NM_001122965 126638 Hs.376144 NM_152364 ENSG00000215853 RPTN - repetin protein-coding 13-PTNLD9-TUMOR_peak_47771 chr7 66594228 66594457 + 27.56273 NA intron (NM_018264, intron 13 of 15) L1MC1|LINE|L1 -14958 NR_039793 100616310 NR_039793 miRBase:MI0017277 MIR4650-1 - microRNA 4650-1 ncRNA 13-PTNLD9-TUMOR_peak_13584 chr12 101412403 101412624 + 27.56273 NA intron (NM_001286616, intron 7 of 26) intron (NM_001286616, intron 7 of 26) 117089 NM_001286616 121601 Hs.58785 NM_178826 HPRD:15527 ANO4 TMEM16D anoctamin 4 protein-coding 13-PTNLD9-TUMOR_peak_33642 chr3 8525083 8525304 + 27.56273 NA intron (NR_033378, intron 3 of 3) intron (NR_033378, intron 3 of 3) 18151 NR_033378 100288428 Hs.651576 NR_033378 ENSG00000227110 LMCD1-AS1 - LMCD1 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_29044 chr2 171382016 171382302 + 27.56273 NA intron (NR_045682, intron 31 of 35) intron (NR_045682, intron 31 of 35) -174706 NR_110576 101929753 Hs.534101 NR_110576 LOC101929753 - uncharacterized LOC101929753 ncRNA 13-PTNLD9-TUMOR_peak_1843 chr1 54692748 54693304 + 27.55612 NA intron (NM_145716, intron 17 of 17) intron (NM_145716, intron 17 of 17) -9090 NR_103541 619518 Hs.591438 NM_001034847 SSBP3-AS1 C1orf191|MST128 SSBP3 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_10841 chr11 86303925 86304272 + 27.52791 NA intron (NM_001014811, intron 1 of 13) intron (NM_001014811, intron 1 of 13) 79142 NM_001014811 10873 Hs.199743 NM_006680 HPRD:06862 ME3 NADP-ME malic enzyme 3, NADP(+)-dependent, mitochondrial protein-coding 13-PTNLD9-TUMOR_peak_51981 chr8 128608388 128608779 + 27.51759 NA Intergenic MLT1J2|LTR|ERVL-MaLR -114199 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLo-1|LINC00860 cancer susceptibility candidate 8 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_34322 chr3 41013119 41013572 + 27.51074 NA Intergenic Intergenic -227597 NM_001904 1499 Hs.476018 NM_001904 HPRD:00286 CTNNB1 CTNNB|MRD19|armadillo catenin (cadherin-associated protein), beta 1, 88kDa protein-coding 13-PTNLD9-TUMOR_peak_18731 chr16 21522916 21523173 + 27.50331 NA Intergenic Intergenic 8721 NR_002594 387254 Hs.448808 NR_002594 SLC7A5P2 IMAA|MMAA solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_46601 chr6 170747455 170747828 + 27.50326 NA Intergenic Intergenic 107792 NR_039787 100616430 NR_039787 MIR4644 - microRNA 4644 ncRNA 13-PTNLD9-TUMOR_peak_53789 chr9 85642567 85642768 + 27.50326 NA intron (NM_152573, intron 1 of 16) intron (NM_152573, intron 1 of 16) 35376 NM_152573 158158 Hs.129136 NM_152573 HPRD:08337 RASEF RAB45 RAS and EF-hand domain containing protein-coding 13-PTNLD9-TUMOR_peak_32446 chr21 44232692 44232969 + 27.50326 NA Intergenic LTR10C|LTR|ERV1 66555 NM_001260477 10785 Hs.248815 NM_018669 HPRD:09330 WDR4 TRM82|TRMT82 WD repeat domain 4 protein-coding 13-PTNLD9-TUMOR_peak_23543 chr18 77551513 77551924 + 27.49587 NA Intergenic Intergenic -71950 NM_012283 26251 Hs.247905 NM_012283 HPRD:12036 KCNG2 KCNF2|KV6.2 potassium voltage-gated channel, subfamily G, member 2 protein-coding 13-PTNLD9-TUMOR_peak_32901 chr22 23023900 23024161 + 27.46058 NA Intergenic Intergenic 35248 NM_199127 91227 Hs.450000 NM_080839 GGTLC2 GGTL4 gamma-glutamyltransferase light chain 2 protein-coding 13-PTNLD9-TUMOR_peak_10884 chr11 90202157 90202461 + 27.46058 NA intron (NR_104190, intron 1 of 6) L1MC3|LINE|L1 86716 NR_039711 100616186 NR_039711 miRBase:MI0016852 MIR4490 - microRNA 4490 ncRNA 13-PTNLD9-TUMOR_peak_16197 chr14 71132790 71132960 + 27.45897 NA intron (NM_015351, intron 1 of 2) intron (NM_015351, intron 1 of 2) 24371 NM_015351 23508 Hs.79170 NM_015351 ENSG00000133985 TTC9 TTC9A tetratricopeptide repeat domain 9 protein-coding 13-PTNLD9-TUMOR_peak_38841 chr4 88510740 88510995 + 27.42820 NA Intergenic LTR26|LTR|ERV1 -18814 NM_014208 1834 Hs.678914 NM_014208 HPRD:00508 DSPP DFNA39|DGI1|DMP3|DPP|DSP|DTDP2 dentin sialophosphoprotein protein-coding 13-PTNLD9-TUMOR_peak_6120 chr1 244517132 244517315 + 27.42820 NA intron (NM_001012970, intron 1 of 4) intron (NM_001012970, intron 1 of 4) 1286 NM_001276348 200159 Hs.442703 NM_001012970 HPRD:13168 C1orf100 - chromosome 1 open reading frame 100 protein-coding 13-PTNLD9-TUMOR_peak_3101 chr1 120654427 120654640 + 27.41508 NA Intergenic Intergenic -42216 NM_024408 4853 Hs.487360 NM_024408 HPRD:02606 NOTCH2 AGS2|HJCYS|hN2 notch 2 protein-coding 13-PTNLD9-TUMOR_peak_43405 chr6 1176889 1177149 + 27.40713 NA Intergenic Intergenic -75452 NR_027115 285768 Hs.209463 NR_027115 LOC285768 - uncharacterized LOC285768 ncRNA 13-PTNLD9-TUMOR_peak_46303 chr6 151055451 151055717 + 27.40713 NA intron (NM_001029884, intron 3 of 16) intron (NM_001029884, intron 3 of 16) -131231 NM_001242769 25902 Hs.591343 NM_015440 HPRD:09967 MTHFD1L FTHFSDC1|MTC1THFS|dJ292B18.2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like protein-coding 13-PTNLD9-TUMOR_peak_53882 chr9 90182580 90182896 + 27.39354 NA intron (NM_001288729, intron 2 of 25) intron (NM_001288729, intron 2 of 25) 69288 NM_001288729 1612 Hs.380277 NM_004938 HPRD:02902 DAPK1 DAPK death-associated protein kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_37690 chr4 3906010 3906467 + 27.39354 NA Intergenic Intergenic 50910 NR_024253 348926 Hs.591720 NR_024253 FAM86EP - family with sequence similarity 86, member A pseudogene pseudo 13-PTNLD9-TUMOR_peak_28852 chr2 159846963 159847305 + 27.34567 NA intron (NM_001145909, intron 1 of 26) L2c|LINE|L2 21988 NM_033394 85461 Hs.61590 NM_033394 HPRD:18146 TANC1 ROLSB|TANC tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 protein-coding 13-PTNLD9-TUMOR_peak_7638 chr10 72137886 72138165 + 27.34287 NA intron (NM_001278212, intron 1 of 4) intron (NM_001278212, intron 1 of 4) -1490 NM_001278213 55222 Hs.7778 NM_018205 HPRD:14314 LRRC20 - leucine rich repeat containing 20 protein-coding 13-PTNLD9-TUMOR_peak_11915 chr12 5488975 5489261 + 27.34031 NA Intergenic Intergenic -52162 NM_001102654 4908 Hs.99171 NM_002527 HPRD:01219 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 13-PTNLD9-TUMOR_peak_7304 chr10 49197045 49197509 + 27.33939 NA Intergenic Intergenic 10548 NM_001137548 644054 Hs.99249 NM_001137548 ENSG00000188279 FAM25C bA164N7.4 family with sequence similarity 25, member C protein-coding 13-PTNLD9-TUMOR_peak_48749 chr7 106065367 106065997 + 27.33633 NA Intergenic LTR90B|LTR|LTR -140044 NM_005746 10135 Hs.489615 NM_005746 HPRD:09938 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 13-PTNLD9-TUMOR_peak_11649 chr11 130016193 130016540 + 27.32958 NA Intergenic Intergenic -13316 NM_021978 6768 Hs.504315 NM_021978 HPRD:06005 ST14 ARCI11|HAI|MT-SP1|MTSP1|PRSS14|SNC19|TADG15|TMPRSS14 suppression of tumorigenicity 14 (colon carcinoma) protein-coding 13-PTNLD9-TUMOR_peak_32673 chr22 18290788 18291101 + 27.31625 NA intron (NM_015241, intron 29 of 31) intron (NM_015241, intron 29 of 31) 30888 NR_103718 200298 Hs.517397 NR_103718 ENSG00000269220 LINC00528 C22orf37 long intergenic non-protein coding RNA 528 ncRNA 13-PTNLD9-TUMOR_peak_54282 chr9 106837284 106837510 + 27.31281 NA Intergenic Intergenic 17358 NR_121580 101928550 Hs.144722 NR_121580 ENSG00000270332 SMC2-AS1 - SMC2 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_20056 chr16 88096248 88096428 + 27.31281 NA intron (NM_017869, intron 10 of 11) intron (NM_017869, intron 10 of 11) 38253 NR_120310 400553 Hs.592071 NR_120310 ENSG00000205037 LOC400553 - uncharacterized LOC400553 ncRNA 13-PTNLD9-TUMOR_peak_32505 chr21 45132529 45132730 + 27.30330 NA Intergenic LTR35A|LTR|ERV1 -6349 NM_003681 8566 Hs.284491 NM_003681 HPRD:01526 PDXK C21orf124|C21orf97|HEL-S-1a|PKH|PNK pyridoxal (pyridoxine, vitamin B6) kinase protein-coding 13-PTNLD9-TUMOR_peak_3376 chr1 146987301 146987548 + 27.30330 NA non-coding (NR_038423, exon 2 of 4) non-coding (NR_038423, exon 2 of 4) 2275 NR_038423 100289211 Hs.323484 NR_038423 LINC00624 - long intergenic non-protein coding RNA 624 ncRNA 13-PTNLD9-TUMOR_peak_3283 chr1 145165099 145165310 + 27.29433 NA intron (NM_001277444, intron 20 of 24) intron (NM_001277444, intron 20 of 24) -43909 NM_203458 388677 Hs.655156 NM_203458 HPRD:14833 NOTCH2NL N2N notch 2 N-terminal like protein-coding 13-PTNLD9-TUMOR_peak_31555 chr20 52199569 52199830 + 27.28721 NA promoter-TSS (NM_006526) promoter-TSS (NM_006526) -63 NM_006526 7764 Hs.155040 NM_006526 HPRD:04272 ZNF217 ZABC1 zinc finger protein 217 protein-coding 13-PTNLD9-TUMOR_peak_49395 chr7 140427462 140427715 + 27.26683 NA Intergenic AluY|SINE|Alu -30711 NR_024454 100134713 Hs.534141 NR_024454 ENSG00000240889 NDUFB2-AS1 - NDUFB2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_52715 chr9 6931955 6932265 + 27.26467 NA intron (NM_001146696, intron 8 of 17) intron (NM_001146696, intron 8 of 17) 174469 NM_015061 23081 Hs.709425 NM_015061 HPRD:12016 KDM4C GASC1|JHDM3C|JMJD2C|TDRD14C|bA146B14.1 lysine (K)-specific demethylase 4C protein-coding 13-PTNLD9-TUMOR_peak_10934 chr11 93885524 93885786 + 27.26467 NA intron (NM_015368, intron 1 of 4) intron (NM_015368, intron 1 of 4) 23561 NM_015368 24145 Hs.591976 NM_015368 HPRD:10526 PANX1 MRS1|PX1|UNQ2529 pannexin 1 protein-coding 13-PTNLD9-TUMOR_peak_11914 chr12 5428123 5428346 + 27.25690 NA Intergenic Intergenic -75917 NR_120477 101929584 Hs.436529 NR_120476 ENSG00000256115 LOC101929584 - uncharacterized LOC101929584 ncRNA 13-PTNLD9-TUMOR_peak_27724 chr2 97151816 97152141 + 27.25690 NA Intergenic Intergenic 19144 NM_001285486 93082 Hs.149219 NM_001080535 HPRD:14296 NEURL3 LINCR neuralized E3 ubiquitin protein ligase 3 protein-coding 13-PTNLD9-TUMOR_peak_26283 chr2 21130767 21131009 + 27.25690 NA Intergenic Intergenic -107998 NM_001282722 60526 Hs.187823 NM_021925 HPRD:07113 C2orf43 - chromosome 2 open reading frame 43 protein-coding 13-PTNLD9-TUMOR_peak_54265 chr9 104276368 104276606 + 27.25366 NA Intergenic MLT2B3|LTR|ERVL -19644 NM_019592 56254 Hs.729085 NM_019592 HPRD:07410 RNF20 BRE1|BRE1A|hBRE1 ring finger protein 20, E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_40055 chr4 187657038 187657319 + 27.25366 NA Intergenic Intergenic -12191 NM_005245 2195 Hs.481371 NM_005245 HPRD:02986 FAT1 CDHF7|CDHR8|FAT|ME5|hFat1 FAT atypical cadherin 1 protein-coding 13-PTNLD9-TUMOR_peak_2433 chr1 90418897 90419192 + 27.23221 NA Intergenic LTR8A|LTR|ERV1 41481 NR_002830 492303 Hs.550796 NR_002830 GEMIN8P4 - gem (nuclear organelle) associated protein 8 pseudogene 4 pseudo 13-PTNLD9-TUMOR_peak_30827 chr20 32902346 32902644 + 27.23115 NA Intergenic L2c|LINE|L2 -2887 NM_001161766 191 Hs.388004 NM_000687 HPRD:01621 AHCY SAHH|adoHcyase adenosylhomocysteinase protein-coding 13-PTNLD9-TUMOR_peak_4239 chr1 165085988 165086234 + 27.23115 NA Intergenic Intergenic 239367 NM_001174069 4009 Hs.667312 NM_177398 HPRD:02623 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1, alpha protein-coding 13-PTNLD9-TUMOR_peak_10474 chr11 70079556 70080215 + 27.19703 NA Intergenic Intergenic 30616 NM_003824 8772 Hs.86131 NM_003824 HPRD:03909 FADD MORT1 Fas (TNFRSF6)-associated via death domain protein-coding 13-PTNLD9-TUMOR_peak_5934 chr1 235061518 235061985 + 27.19703 NA Intergenic Intergenic 201962 NR_038856 100506810 Hs.586634 NR_038856 ENSG00000227630 LINC01132 - long intergenic non-protein coding RNA 1132 ncRNA 13-PTNLD9-TUMOR_peak_29371 chr2 191813459 191813738 + 27.19282 NA intron (NM_014905, intron 14 of 17) intron (NM_014905, intron 14 of 17) 65378 NM_007315 6772 Hs.642990 NM_007315 HPRD:02777 STAT1 CANDF7|ISGF-3|STAT91 signal transducer and activator of transcription 1, 91kDa protein-coding 13-PTNLD9-TUMOR_peak_2026 chr1 62790872 62791139 + 27.19282 NA Intergenic ERV3-16A3_LTR|LTR|ERVL -5922 NM_181712 163782 Hs.283398 NM_181712 HPRD:14109 KANK4 ANKRD38|dJ1078M7.1 KN motif and ankyrin repeat domains 4 protein-coding 13-PTNLD9-TUMOR_peak_56606 chrX 149743853 149744153 + 27.18360 NA intron (NM_000252, intron 1 of 14) MER5A1|DNA|hAT-Charlie 6956 NM_000252 4534 Hs.655056 NM_000252 HPRD:02331 MTM1 CNM|MTMX|XLMTM myotubularin 1 protein-coding 13-PTNLD9-TUMOR_peak_24211 chr19 14999670 14999873 + 27.18104 NA Intergenic LTR13|LTR|ERVK -7604 NM_030901 26333 Hs.247717 NM_030901 HPRD:17781 OR7A17 BC85395_4|HTPCRX19 olfactory receptor, family 7, subfamily A, member 17 protein-coding 13-PTNLD9-TUMOR_peak_42832 chr5 159253497 159253755 + 27.18104 NA intron (NR_109891, intron 2 of 2) intron (NR_109891, intron 2 of 2) 44765 NR_109891 101927766 Hs.638568 NR_109891 ENSG00000253311 LOC101927766 - uncharacterized LOC101927766 ncRNA 13-PTNLD9-TUMOR_peak_38768 chr4 84469646 84469900 + 27.18104 NA intron (NM_001256421, intron 3 of 12) intron (NM_001256421, intron 3 of 12) 12303 NM_032717 84803 Hs.99196 NM_032717 HPRD:14417 AGPAT9 AGPAT 10|AGPAT8|GPAT3|LPAAT-theta|MAG1 1-acylglycerol-3-phosphate O-acyltransferase 9 protein-coding 13-PTNLD9-TUMOR_peak_24391 chr19 18364578 18364888 + 27.14068 NA intron (NR_036575, intron 1 of 3) intron (NR_036575, intron 1 of 3) 1496 NR_036575 729966 Hs.710873 NR_036575 ENSG00000105650 LOC729966 - uncharacterized LOC729966 pseudo 13-PTNLD9-TUMOR_peak_33658 chr3 8781876 8782096 + 27.13797 NA intron (NM_033337, intron 1 of 1) MLT1F1|LTR|ERVL-MaLR 6500 NM_001234 859 Hs.98303 NM_001234 HPRD:03154 CAV3 LGMD1C|LQT9|VIP-21|VIP21 caveolin 3 protein-coding 13-PTNLD9-TUMOR_peak_54454 chr9 114727779 114728085 + 27.12444 NA Intergenic Intergenic 33552 NR_039814 100616114 NR_039814 MIR4668 - microRNA 4668 ncRNA 13-PTNLD9-TUMOR_peak_18052 chr15 98698143 98698432 + 27.10582 NA Intergenic L2a|LINE|L2 -66305 NR_120325 101927332 NR_120325 LOC101927332 - uncharacterized LOC101927332 ncRNA 13-PTNLD9-TUMOR_peak_54128 chr9 99646661 99647069 + 27.10332 NA Intergenic L1MDb|LINE|L1 15683 NR_038890 100132781 Hs.710921 NR_038890 LOC100132781 - cyclin Y-like 1 pseudogene pseudo 13-PTNLD9-TUMOR_peak_51952 chr8 127640901 127641127 + 27.09102 NA Intergenic Intergenic -70303 NM_174911 157638 Hs.741352 NM_174911 HPRD:11403 FAM84B BCMP101|NSE2 family with sequence similarity 84, member B protein-coding 13-PTNLD9-TUMOR_peak_40074 chr4 190064459 190064759 + 27.09102 NA Intergenic LTR16E2|LTR|ERVL -516151 NR_121679 101928971 Hs.519164 NR_121679 ENSG00000250739 LINC01262 TCONS_l2_00021807 long intergenic non-protein coding RNA 1262 ncRNA 13-PTNLD9-TUMOR_peak_39690 chr4 154407519 154407784 + 27.08515 NA intron (NM_015196, intron 3 of 34) MLT1L|LTR|ERVL-MaLR 20153 NM_015196 23240 Hs.732450 NM_015196 HPRD:13823 KIAA0922 TMEM131L KIAA0922 protein-coding 13-PTNLD9-TUMOR_peak_46756 chr7 4322580 4322806 + 27.07967 NA Intergenic Intergenic 153376 NM_001079653 221935 Hs.653013 NM_152744 HPRD:07388 SDK1 - sidekick cell adhesion molecule 1 protein-coding 13-PTNLD9-TUMOR_peak_11983 chr12 6641770 6642036 + 27.04384 NA TTS (NM_014865) TTS (NM_014865) -1668 NM_001289745 2597 Hs.544577 NM_002046 HPRD:00713 GAPDH G3PD|GAPD|HEL-S-162eP glyceraldehyde-3-phosphate dehydrogenase protein-coding 13-PTNLD9-TUMOR_peak_49273 chr7 137352445 137352777 + 27.03254 NA intron (NM_004717, intron 3 of 33) intron (NM_004717, intron 3 of 33) 178998 NM_004717 9162 Hs.242947 NM_004717 HPRD:07238 DGKI DGK-IOTA diacylglycerol kinase, iota protein-coding 13-PTNLD9-TUMOR_peak_13119 chr12 63110714 63110931 + 27.02353 NA intron (NM_020700, intron 6 of 9) FRAM|SINE|Alu 113356 NR_029661 406891 NR_029661 miRBase:MI0000434 MIRLET7I LET7I|MIRNLET7I|hsa-let-7i microRNA let-7i ncRNA 13-PTNLD9-TUMOR_peak_52171 chr8 134387751 134388008 + 27.02186 NA Intergenic Intergenic -78332 NM_006096 10397 Hs.372914 NM_006096 HPRD:05586 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 13-PTNLD9-TUMOR_peak_18091 chr15 101253517 101253987 + 27.02186 NA Intergenic Intergenic 110997 NM_198243 140460 Hs.31845 NM_024708 HPRD:10674 ASB7 - ankyrin repeat and SOCS box containing 7 protein-coding 13-PTNLD9-TUMOR_peak_35017 chr3 75551984 75552212 + 27.00893 NA Intergenic HERVS71-int|LTR|ERV1 -67832 NR_024241 692099 Hs.591652 NR_024241 ENSG00000244026 FAM86DP FAM86D family with sequence similarity 86, member D, pseudogene pseudo 13-PTNLD9-TUMOR_peak_28290 chr2 121537465 121537802 + 26.99638 NA Intergenic Intergenic -17234 NM_005270 2736 Hs.111867 NM_005270 HPRD:01312 GLI2 HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 13-PTNLD9-TUMOR_peak_27547 chr2 88899647 88899972 + 26.99487 NA intron (NM_004836, intron 2 of 16) intron (NM_004836, intron 2 of 16) 27285 NM_004836 9451 Hs.591589 NM_004836 HPRD:04942 EIF2AK3 PEK|PERK|WRS eukaryotic translation initiation factor 2-alpha kinase 3 protein-coding 13-PTNLD9-TUMOR_peak_5243 chr1 206164851 206165257 + 26.96637 NA Intergenic Intergenic 26143 NM_001123168 729533 Hs.661924 NM_001123168 FAM72A LMPIP family with sequence similarity 72, member A protein-coding 13-PTNLD9-TUMOR_peak_2275 chr1 82165008 82165231 + 26.95346 NA promoter-TSS (NM_001297704) promoter-TSS (NM_001297704) -336 NM_001297704 23266 Hs.24212 NM_012302 HPRD:06116 LPHN2 CIRL2|CL2|LEC1|LPHH1 latrophilin 2 protein-coding 13-PTNLD9-TUMOR_peak_30420 chr20 11159701 11159918 + 26.94542 NA Intergenic Intergenic 94222 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 13-PTNLD9-TUMOR_peak_43650 chr6 6791149 6791434 + 26.94542 NA Intergenic Intergenic -168232 NR_026970 285780 Hs.655737 NM_173675 HPRD:08165 LY86-AS1 LY86-AS|LY86AS LY86 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_48469 chr7 99349288 99349501 + 26.94542 NA Intergenic Intergenic -16571 NM_001256497 100861540 NM_001256497 CYP3A7-CYP3AP1 CYP3A7-3AP1|CYP3A7.1L CYP3A7-CYP3AP1 readthrough protein-coding 13-PTNLD9-TUMOR_peak_32309 chr21 39649787 39650058 + 26.93212 NA intron (NM_170737, intron 1 of 2) intron (NM_170737, intron 1 of 2) 5580 NM_170737 3772 Hs.411299 NM_002243 HPRD:03659 KCNJ15 IRKK|KIR1.3|KIR4.2 potassium inwardly-rectifying channel, subfamily J, member 15 protein-coding 13-PTNLD9-TUMOR_peak_36322 chr3 148963637 148963996 + 26.90999 NA Intergenic Intergenic -23984 NR_046371 1356 Hs.558314 NM_000096 HPRD:00317 CP CP-2 ceruloplasmin (ferroxidase) protein-coding 13-PTNLD9-TUMOR_peak_34340 chr3 42220924 42221217 + 26.90999 NA intron (NM_001265610, intron 2 of 11) intron (NM_001265610, intron 2 of 11) 19409 NM_014965 22906 Hs.535711 NM_014965 HPRD:09732 TRAK1 MILT1|OIP106 trafficking protein, kinesin binding 1 protein-coding 13-PTNLD9-TUMOR_peak_22513 chr18 7038386 7038832 + 26.89644 NA intron (NM_005559, intron 11 of 62) intron (NM_005559, intron 11 of 62) 79204 NM_005559 284217 Hs.270364 NM_005559 HPRD:01033 LAMA1 LAMA|S-LAM-alpha laminin, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_46711 chr7 2349558 2349851 + 26.88782 NA intron (NM_013321, intron 1 of 10) intron (NM_013321, intron 1 of 10) 4395 NM_013321 29886 Hs.584900 NM_013321 HPRD:11592 SNX8 Mvp1 sorting nexin 8 protein-coding 13-PTNLD9-TUMOR_peak_31404 chr20 48695888 48696139 + 26.88448 NA Intergenic AluY|SINE|Alu 33722 NM_001257399 7335 Hs.420529 NM_021988 ENSG00000244687 UBE2V1 CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A ubiquitin-conjugating enzyme E2 variant 1 protein-coding 13-PTNLD9-TUMOR_peak_50344 chr8 23310117 23310499 + 26.86750 NA intron (NM_004901, intron 1 of 12) intron (NM_004901, intron 1 of 12) 4936 NM_004901 9583 Hs.444389 NM_004901 HPRD:09618 ENTPD4 LALP70|LAP70|LYSAL1|NTPDase-4|UDPase ectonucleoside triphosphate diphosphohydrolase 4 protein-coding 13-PTNLD9-TUMOR_peak_25655 chr19 55463997 55464335 + 26.86750 NA Intergenic MER41A|LTR|ERV1 -5293 NM_206828 199713 Hs.351118 NM_139176 HPRD:10112 NLRP7 CLR19.4|HYDM|NALP7|NOD12|PAN7|PYPAF3 NLR family, pyrin domain containing 7 protein-coding 13-PTNLD9-TUMOR_peak_48399 chr7 97541034 97541226 + 26.86750 NA Intergenic Intergenic -39276 NM_001673 440 Hs.489207 NM_001673 HPRD:00153 ASNS ASNSD|TS11 asparagine synthetase (glutamine-hydrolyzing) protein-coding 13-PTNLD9-TUMOR_peak_42250 chr5 138280197 138280722 + 26.86750 NA Intergenic Intergenic -69402 NM_015564 26045 Hs.656653 NM_015564 HPRD:17454 LRRTM2 - leucine rich repeat transmembrane neuronal 2 protein-coding 13-PTNLD9-TUMOR_peak_42721 chr5 153418292 153418732 + 26.86716 NA promoter-TSS (NM_018691) promoter-TSS (NM_018691) -7 NM_001242336 4238 Hs.432818 NM_005927 HPRD:02731 MFAP3 - microfibrillar-associated protein 3 protein-coding 13-PTNLD9-TUMOR_peak_7258 chr10 47749045 47749225 + 26.85979 NA intron (NM_001098845, intron 1 of 11) intron (NM_001098845, intron 1 of 11) 2285 NM_001098845 728113 Hs.705389 NM_001630 ENSG00000150165 ANXA8L1 ANXA8|ANXA8L2|VAC-beta|bA145E20.2 annexin A8-like 1 protein-coding 13-PTNLD9-TUMOR_peak_52656 chr9 4137234 4137611 + 26.84922 NA intron (NM_001042413, intron 2 of 10) intron (NM_001042413, intron 2 of 10) 14761 NM_152629 169792 Hs.162125 NM_152629 HPRD:13582 GLIS3 ZNF515 GLIS family zinc finger 3 protein-coding 13-PTNLD9-TUMOR_peak_13901 chr12 113568177 113568764 + 26.83578 NA intron (NM_001193521, intron 2 of 20) intron (NM_001193521, intron 2 of 20) 4934 NM_001301202 8437 Hs.528693 NM_004658 HPRD:04986 RASAL1 RASAL RAS protein activator like 1 (GAP1 like) protein-coding 13-PTNLD9-TUMOR_peak_35785 chr3 127518414 127518653 + 26.83578 NA intron (NM_001003794, intron 2 of 7) intron (NM_001003794, intron 2 of 7) 23192 NM_007283 11343 Hs.277035 NM_007283 HPRD:17574 MGLL HU-K5|HUK5|MAGL|MGL monoglyceride lipase protein-coding 13-PTNLD9-TUMOR_peak_50185 chr8 18815149 18815444 + 26.82566 NA intron (NM_015310, intron 1 of 15) intron (NM_015310, intron 1 of 15) 55900 NM_015310 23362 Hs.434255 NM_015310 HPRD:11462 PSD3 EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_21925 chr17 72038976 72039196 + 26.82566 NA Intergenic Intergenic -160709 NM_000999 6169 Hs.380953 NM_000999 HPRD:16048 RPL38 L38 ribosomal protein L38 protein-coding 13-PTNLD9-TUMOR_peak_51761 chr8 121082227 121082560 + 26.82474 NA Intergenic Intergenic -54954 NM_021110 7373 Hs.409662 NM_021110 HPRD:00379 COL14A1 UND collagen, type XIV, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_16543 chr14 98536216 98536710 + 26.81551 NA Intergenic Intergenic -92002 NR_015430 388011 Hs.651477 NR_015430 ENSG00000246223 C14orf64 - chromosome 14 open reading frame 64 ncRNA 13-PTNLD9-TUMOR_peak_53058 chr9 33763741 33764107 + 26.78892 NA intron (NM_001197098, intron 1 of 4) L2c|LINE|L2 13105 NM_001197098 5646 Hs.654513 NM_002771 HPRD:06685 PRSS3 MTG|PRSS4|T9|TRY3|TRY4 protease, serine, 3 protein-coding 13-PTNLD9-TUMOR_peak_34441 chr3 46734112 46734482 + 26.77524 NA intron (NM_147129, intron 1 of 25) intron (NM_147129, intron 1 of 25) 849 NM_001190707 259173 Hs.517937 NM_147129 HPRD:10643 ALS2CL RN49018 ALS2 C-terminal like protein-coding 13-PTNLD9-TUMOR_peak_36804 chr3 177017813 177018408 + 26.77524 NA intron (NR_047465, intron 1 of 1) intron (NR_047465, intron 1 of 1) 5880 NR_047465 100820709 Hs.518409 NR_047465 LINC00501 - long intergenic non-protein coding RNA 501 ncRNA 13-PTNLD9-TUMOR_peak_43790 chr6 11685659 11685909 + 26.75847 NA Intergenic ERVL-E-int|LTR|ERVL 93496 NM_001143948 84830 Hs.126409 NM_032744 HPRD:12836 ADTRP AIG1L|C6orf105|dJ413H6.1 androgen-dependent TFPI-regulating protein protein-coding 13-PTNLD9-TUMOR_peak_33896 chr3 14514204 14514769 + 26.74717 NA intron (NR_103507, intron 9 of 13) intron (NR_103507, intron 9 of 13) 67364 NM_001080423 80852 Hs.517819 NM_001080423 GRIP2 - glutamate receptor interacting protein 2 protein-coding 13-PTNLD9-TUMOR_peak_41775 chr5 113258162 113258429 + 26.74717 NA Intergenic MER77|LTR|ERVL 408904 NM_022828 64848 Hs.231942 NM_022828 HPRD:11690 YTHDC2 CAHL YTH domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_2539 chr1 94567252 94567410 + 26.74187 NA intron (NM_000350, intron 5 of 49) intron (NM_000350, intron 5 of 49) 19374 NM_000350 24 Hs.416707 NM_000350 HPRD:03408 ABCA4 ABC10|ABCR|ARMD2|CORD3|FFM|RMP|RP19|STGD|STGD1 ATP-binding cassette, sub-family A (ABC1), member 4 protein-coding 13-PTNLD9-TUMOR_peak_42624 chr5 149696854 149697144 + 26.73890 NA Intergenic Intergenic -14474 NM_001012301 340075 Hs.591252 NM_001012301 HPRD:16510 ARSI SPG66 arylsulfatase family, member I protein-coding 13-PTNLD9-TUMOR_peak_42066 chr5 132621343 132621603 + 26.71128 NA intron (NM_015082, intron 6 of 15) intron (NM_015082, intron 6 of 15) 141925 NR_031621 100302134 NR_031621 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 13-PTNLD9-TUMOR_peak_27432 chr2 85732019 85732495 + 26.68250 NA Intergenic Intergenic 33752 NR_038942 100630918 Hs.66049 NR_038942 LOC100630918 - uncharacterized LOC100630918 ncRNA 13-PTNLD9-TUMOR_peak_32622 chr22 16052876 16053139 + 26.68250 NA Intergenic Intergenic -109059 NR_073460 101101776 Hs.617315 NR_073460 BMS1P17 LINC00516 BMS1 pseudogene 17 pseudo 13-PTNLD9-TUMOR_peak_11817 chr12 2378189 2378438 + 26.66988 NA promoter-TSS (NR_046769) promoter-TSS (NR_046769) -629 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_2364 chr1 87606578 87606844 + 26.66790 NA intron (NR_026989, intron 2 of 2) intron (NR_026989, intron 2 of 2) 9102 NR_026985 339524 Hs.306423 NM_207357 HPRD:14169 LINC01140 - long intergenic non-protein coding RNA 1140 ncRNA 13-PTNLD9-TUMOR_peak_9539 chr11 35385675 35385961 + 26.66099 NA intron (NM_001195728, intron 1 of 11) intron (NM_001195728, intron 1 of 11) 55287 NM_004171 6506 Hs.502338 NM_004171 HPRD:02625 SLC1A2 EAAT2|GLT-1 solute carrier family 1 (glial high affinity glutamate transporter), member 2 protein-coding 13-PTNLD9-TUMOR_peak_6749 chr10 27158499 27158777 + 26.65989 NA Intergenic Intergenic -8622 NM_001178121 10006 Hs.508148 NM_005470 HPRD:04336 ABI1 ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1 abl-interactor 1 protein-coding 13-PTNLD9-TUMOR_peak_42913 chr5 167751877 167752264 + 26.65578 NA intron (NM_015238, intron 1 of 22) intron (NM_015238, intron 1 of 22) 33005 NM_001161662 23286 Hs.484047 NM_015238 HPRD:10033 WWC1 HBEBP3|HBEBP36|KIBRA|MEMRYQTL|PPP1R168 WW and C2 domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_32040 chr21 27762321 27762716 + 26.62181 NA Intergenic Intergenic 183063 NM_052954 116159 Hs.37445 NM_052954 ENSG00000166265 CYYR1 C21orf95 cysteine/tyrosine-rich 1 protein-coding 13-PTNLD9-TUMOR_peak_53045 chr9 33506688 33506981 + 26.61313 NA intron (NR_003667, intron 4 of 4) intron (NR_003667, intron 4 of 4) 4330 NR_003667 441394 Hs.521441 NR_003667 SUGT1P1 SGT1P|SUGT1P|bA255A11.1 SUGT1 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_49148 chr7 131830269 131830525 + 26.61287 NA intron (NM_020911, intron 28 of 31) intron (NM_020911, intron 28 of 31) 235418 NR_110836 101928782 Hs.571369 NR_110836 ENSG00000224865 LOC101928782 - uncharacterized LOC101928782 ncRNA 13-PTNLD9-TUMOR_peak_41637 chr5 102091721 102091887 + 26.61287 NA Intergenic MIRc|SINE|MIR -84636 NR_103753 285708 Hs.533011 NR_103753 LINC00491 - long intergenic non-protein coding RNA 491 ncRNA 13-PTNLD9-TUMOR_peak_1389 chr1 42238777 42239140 + 26.61287 NA intron (NM_024503, intron 1 of 8) MIRb|SINE|MIR 145420 NM_024503 59269 Hs.403972 NM_024503 HPRD:09442 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 13-PTNLD9-TUMOR_peak_16199 chr14 71221798 71222347 + 26.59607 NA intron (NM_001284231, intron 3 of 11) intron (NM_001284231, intron 3 of 11) 28097 NM_001284232 4293 Hs.445496 NM_033141 HPRD:15965 MAP3K9 MEKK9|MLK1|PRKE1 mitogen-activated protein kinase kinase kinase 9 protein-coding 13-PTNLD9-TUMOR_peak_46751 chr7 3995773 3995990 + 26.57693 NA intron (NM_152744, intron 7 of 44) intron (NM_152744, intron 7 of 44) -173436 NM_001079653 221935 Hs.653013 NM_152744 HPRD:07388 SDK1 - sidekick cell adhesion molecule 1 protein-coding 13-PTNLD9-TUMOR_peak_29098 chr2 173557842 173558113 + 26.57693 NA Intergenic Intergenic -42548 NM_007023 11069 Hs.470646 NM_007023 HPRD:06929 RAPGEF4 2|CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor (GEF) 4 protein-coding 13-PTNLD9-TUMOR_peak_35960 chr3 132977284 132977540 + 26.56523 NA intron (NM_001282865, intron 2 of 3) intron (NM_001282865, intron 2 of 3) -1447 NR_110812 101927455 Hs.570550 NR_110812 ENSG00000251011 TMEM108-AS1 - TMEM108 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_4637 chr1 181128618 181128808 + 26.55735 NA Intergenic Intergenic 71075 NM_016545 51278 Hs.15725 NM_016545 HPRD:06210 IER5 SBBI48 immediate early response 5 protein-coding 13-PTNLD9-TUMOR_peak_35077 chr3 86842961 86843238 + 26.55735 NA Intergenic Intergenic 197158 NM_016206 389136 Hs.606507 NM_016206 HPRD:13431 VGLL3 VGL-3|VGL3 vestigial-like family member 3 protein-coding 13-PTNLD9-TUMOR_peak_53246 chr9 39582916 39583130 + 26.55735 NA Intergenic Intergenic -118497 NR_003528 401509 Hs.449445 NM_001032297 ENSG00000198416 ZNF658B - zinc finger protein 658B, pseudogene pseudo 13-PTNLD9-TUMOR_peak_50713 chr8 41628098 41628406 + 26.55735 NA intron (NM_001142446, intron 1 of 42) intron (NM_001142446, intron 1 of 42) 26888 NM_020475 286 Hs.654438 NM_000037 HPRD:01693 ANK1 ANK|SPH1|SPH2 ankyrin 1, erythrocytic protein-coding 13-PTNLD9-TUMOR_peak_8037 chr10 95218546 95218850 + 26.55735 NA intron (NM_133337, intron 1 of 52) intron (NM_133337, intron 1 of 52) 23376 NM_133337 26509 Hs.602086 NM_013451 HPRD:06857 MYOF FER1L3 myoferlin protein-coding 13-PTNLD9-TUMOR_peak_40359 chr5 13932750 13933111 + 26.54617 NA intron (NM_001369, intron 1 of 78) L2c|LINE|L2 11659 NM_001369 1767 Hs.212360 NM_001369 HPRD:04514 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein, axonemal, heavy chain 5 protein-coding 13-PTNLD9-TUMOR_peak_25213 chr19 47405479 47405933 + 26.52371 NA Intergenic Intergenic -16227 NM_004491 2909 Hs.509447 NM_004491 HPRD:05592 ARHGAP35 GRF-1|GRLF1|P190-A|P190A|p190ARhoGAP|p190RhoGAP Rho GTPase activating protein 35 protein-coding 13-PTNLD9-TUMOR_peak_1539 chr1 45019519 45019710 + 26.50859 NA intron (NM_018150, intron 2 of 14) LTR33|LTR|ERVL 8449 NR_049849 100847089 NR_049849 MIR5584 - microRNA 5584 ncRNA 13-PTNLD9-TUMOR_peak_32086 chr21 30568746 30568920 + 26.49428 NA intron (NR_027072, intron 1 of 1) intron (NR_027072, intron 1 of 1) 3018 NR_027072 193629 Hs.720711 NM_138968 ENSG00000215533 LINC00189 C21orf109|NCRNA00189 long intergenic non-protein coding RNA 189 ncRNA 13-PTNLD9-TUMOR_peak_30166 chr2 240552640 240552980 + 26.49122 NA Intergenic Intergenic -131744 NR_037808 150935 Hs.555582 NR_037808 LOC150935 - uncharacterized LOC150935 ncRNA 13-PTNLD9-TUMOR_peak_41724 chr5 110886378 110886743 + 26.48537 NA intron (NR_040093, intron 1 of 6) intron (NR_040093, intron 1 of 6) -38403 NM_139164 134429 Hs.93842 NM_139164 HPRD:06133 STARD4 - StAR-related lipid transfer (START) domain containing 4 protein-coding 13-PTNLD9-TUMOR_peak_43541 chr6 3592638 3593041 + 26.48026 NA Intergenic Intergenic -136046 NM_015482 63027 Hs.713588 NM_015482 HPRD:12904 SLC22A23 C6orf85 solute carrier family 22, member 23 protein-coding 13-PTNLD9-TUMOR_peak_10810 chr11 85555520 85555856 + 26.48026 NA Intergenic Intergenic -10456 NM_001286159 220047 Hs.567774 NM_173556 HPRD:14586 CCDC83 CT148 coiled-coil domain containing 83 protein-coding 13-PTNLD9-TUMOR_peak_36597 chr3 160394757 160394960 + 26.46857 NA promoter-TSS (NM_025047) promoter-TSS (NM_025047) -90 NM_025047 80117 Hs.287702 NM_025047 HPRD:07998 ARL14 ARF7 ADP-ribosylation factor-like 14 protein-coding 13-PTNLD9-TUMOR_peak_41211 chr5 71218453 71218710 + 26.46857 NA Intergenic Intergenic -184537 NM_005909 4131 Hs.335079 NM_005909 HPRD:01139 MAP1B FUTSCH|MAP5|PPP1R102 microtubule-associated protein 1B protein-coding 13-PTNLD9-TUMOR_peak_37283 chr3 193590095 193590411 + 26.42275 NA Intergenic MamRep605|Unknown|Unknown 121774 NR_027764 100128023 Hs.730112 NR_027764 DPPA2P3 - developmental pluripotency associated 2 pseudogene 3 pseudo 13-PTNLD9-TUMOR_peak_36053 chr3 136344119 136344359 + 26.40524 NA intron (NM_005862, intron 2 of 33) L2b|LINE|L2 127006 NM_005862 10274 Hs.412586 NM_005862 HPRD:05076 STAG1 SA1|SCC3A stromal antigen 1 protein-coding 13-PTNLD9-TUMOR_peak_39773 chr4 159917851 159918158 + 26.40524 NA intron (NM_152543, intron 1 of 4) MLT1L|LTR|ERVL-MaLR 38329 NM_152543 152940 Hs.415576 NM_152543 C4orf45 - chromosome 4 open reading frame 45 protein-coding 13-PTNLD9-TUMOR_peak_6027 chr1 238036829 238037137 + 26.38194 NA intron (NR_027247, intron 3 of 11) intron (NR_027247, intron 3 of 11) 11508 NR_027247 100130331 Hs.661736 NR_027247 ENSG00000237250 LOC100130331 - POTE ankyrin domain family, member F pseudogene pseudo 13-PTNLD9-TUMOR_peak_36684 chr3 170038403 170038671 + 26.36627 NA Intergenic MER41A|LTR|ERV1 -36936 NM_001145098 6498 Hs.536655 NM_005414 HPRD:01319 SKIL SNO|SnoA|SnoI|SnoN SKI-like proto-oncogene protein-coding 13-PTNLD9-TUMOR_peak_7302 chr10 49094306 49094522 + 26.36627 NA Intergenic Intergenic 113411 NM_001137548 644054 Hs.99249 NM_001137548 ENSG00000188279 FAM25C bA164N7.4 family with sequence similarity 25, member C protein-coding 13-PTNLD9-TUMOR_peak_607 chr1 20940443 20940638 + 26.36627 NA intron (NM_001785, intron 3 of 3) intron (NM_001785, intron 3 of 3) -19408 NM_032409 65018 Hs.389171 NM_032409 HPRD:10514 PINK1 BRPK|PARK6 PTEN induced putative kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_44052 chr6 19892530 19892829 + 26.36627 NA Intergenic Intergenic 55078 NM_001546 3400 Hs.519601 NM_001546 ID4 IDB4|bHLHb27 inhibitor of DNA binding 4, dominant negative helix-loop-helix protein protein-coding 13-PTNLD9-TUMOR_peak_4041 chr1 159158299 159158472 + 26.36627 NA intron (NM_001127173, intron 1 of 8) CpG 13827 NR_037870 100131825 Hs.701271 NR_037870 ENSG00000225670 CADM3-AS1 - CADM3 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_47919 chr7 73515697 73515952 + 26.35961 NA intron (NM_002314, intron 5 of 15) FRAM|SINE|Alu 8338 NM_001204426 3984 Hs.647035 NM_002314 HPRD:03210 LIMK1 LIMK|LIMK-1 LIM domain kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_7215 chr10 46543295 46543621 + 26.33267 NA Intergenic Intergenic 76600 NM_001042357 26095 Hs.440733 NM_015605 HPRD:10898 PTPN20B CT126|PTPN20A|bA142I17.1|bA42B19.1|hPTPN20 protein tyrosine phosphatase, non-receptor type 20B protein-coding 13-PTNLD9-TUMOR_peak_40051 chr4 187597671 187597930 + 26.33021 NA intron (NM_005245, intron 2 of 26) intron (NM_005245, intron 2 of 26) 47187 NM_005245 2195 Hs.481371 NM_005245 HPRD:02986 FAT1 CDHF7|CDHR8|FAT|ME5|hFat1 FAT atypical cadherin 1 protein-coding 13-PTNLD9-TUMOR_peak_44113 chr6 24313750 24313968 + 26.31676 NA intron (NM_016356, intron 2 of 9) intron (NM_016356, intron 2 of 9) -43272 NM_181337 353219 Hs.697888 NM_181337 HPRD:09741 KAAG1 RU2AS kidney associated antigen 1 protein-coding 13-PTNLD9-TUMOR_peak_11943 chr12 6202336 6202735 + 26.29695 NA intron (NM_000552, intron 6 of 51) LTR16A|LTR|ERVL 31301 NM_000552 7450 Hs.440848 NM_000552 HPRD:01906 VWF F8VWF|VWD von Willebrand factor protein-coding 13-PTNLD9-TUMOR_peak_36096 chr3 138175006 138175412 + 26.28731 NA intron (NM_031913, intron 3 of 22) intron (NM_031913, intron 3 of 22) 21794 NM_031913 83850 Hs.477711 NM_031913 HPRD:13054 ESYT3 CHR3SYT|E-Syt3|FAM62C extended synaptotagmin-like protein 3 protein-coding 13-PTNLD9-TUMOR_peak_49316 chr7 138643319 138643674 + 26.28115 NA intron (NM_001164665, intron 1 of 19) intron (NM_001164665, intron 1 of 19) 22568 NM_020910 57670 Hs.605380 NM_020910 ENSG00000122778 KIAA1549 - KIAA1549 protein-coding 13-PTNLD9-TUMOR_peak_42513 chr5 146689889 146690150 + 26.28014 NA intron (NM_001112724, intron 4 of 12) intron (NM_001112724, intron 4 of 12) 75440 NM_145001 202374 Hs.585069 NM_145001 HPRD:15445 STK32A YANK1 serine/threonine kinase 32A protein-coding 13-PTNLD9-TUMOR_peak_4662 chr1 182205271 182205658 + 26.28014 NA intron (NR_104175, intron 2 of 2) intron (NR_104175, intron 2 of 2) 77732 NR_104175 400799 Hs.634884 NR_104175 ENSG00000228918 LINC01344 GS1-122H1.2 long intergenic non-protein coding RNA 1344 ncRNA 13-PTNLD9-TUMOR_peak_35882 chr3 129777558 129777951 + 26.25924 NA Intergenic Intergenic -22920 NM_001136152 644974 Hs.722197 NM_001136152 ENSG00000251287 ALG1L2 - ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase-like 2 protein-coding 13-PTNLD9-TUMOR_peak_37466 chr3 197044504 197044797 + 26.25220 NA Intergenic MIRb|SINE|MIR -18507 NM_001290983 1739 Hs.292549 NM_004087 HPRD:03007 DLG1 DLGH1|SAP-97|SAP97|dJ1061C18.1.1|hdlg discs, large homolog 1 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_9290 chr11 20010191 20010477 + 26.25220 NA intron (NM_182964, intron 11 of 37) AmnSINE1|SINE|Deu -33768 NM_001111019 89797 Hs.64341 NM_145117 HPRD:07385 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 13-PTNLD9-TUMOR_peak_5528 chr1 223888725 223889278 + 26.24300 NA promoter-TSS (NM_001146068) promoter-TSS (NM_001146068) -294 NM_001146068 824 Hs.350899 NM_001748 HPRD:00254 CAPN2 CANP2|CANPL2|CANPml|mCANP calpain 2, (m/II) large subunit protein-coding 13-PTNLD9-TUMOR_peak_37289 chr3 193700007 193700421 + 26.24262 NA intron (NR_033944, intron 1 of 2) intron (NR_033944, intron 1 of 2) 11813 NR_027764 100128023 Hs.730112 NR_027764 DPPA2P3 - developmental pluripotency associated 2 pseudogene 3 pseudo 13-PTNLD9-TUMOR_peak_18857 chr16 27590013 27590283 + 26.21614 NA intron (NM_015202, intron 2 of 27) AluSz|SINE|Alu 28680 NM_015202 23247 Hs.460459 NM_015202 HPRD:13806 KIAA0556 - KIAA0556 protein-coding 13-PTNLD9-TUMOR_peak_36397 chr3 150589117 150589324 + 26.21545 NA Intergenic Intergenic 72803 NM_052995 7401 Hs.745448 NM_052995 HPRD:05905 CLRN1 RP61|USH3|USH3A clarin 1 protein-coding 13-PTNLD9-TUMOR_peak_49878 chr7 158595555 158595850 + 26.20711 NA intron (NM_020728, intron 1 of 21) intron (NM_020728, intron 1 of 21) 26617 NM_020728 57488 Hs.490795 NM_020728 HPRD:13053 ESYT2 CHR2SYT|E-Syt2|FAM62B extended synaptotagmin-like protein 2 protein-coding 13-PTNLD9-TUMOR_peak_30092 chr2 236617787 236618031 + 26.18529 NA intron (NM_001037131, intron 2 of 17) intron (NM_001037131, intron 2 of 17) 215176 NM_001244888 116987 Hs.435039 NM_014914 HPRD:16359 AGAP1 AGAP-1|CENTG2|GGAP1|cnt-g2 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 protein-coding 13-PTNLD9-TUMOR_peak_18861 chr16 27781064 27781565 + 26.18056 NA exon (NM_015202, exon 21 of 28) exon (NM_015202, exon 21 of 28) 118164 NM_144675 146395 Hs.91910 NM_144675 HPRD:14464 GSG1L PRO19651 GSG1-like protein-coding 13-PTNLD9-TUMOR_peak_21731 chr17 61556270 61556499 + 26.17654 NA exon (NM_000789, exon 3 of 25) exon (NM_000789, exon 3 of 25) 1962 NM_000789 1636 Hs.298469 NM_000789 HPRD:00108 ACE ACE1|CD143|DCP|DCP1|ICH|MVCD3 angiotensin I converting enzyme protein-coding 13-PTNLD9-TUMOR_peak_4902 chr1 200452655 200452884 + 26.17310 NA Intergenic MER5B|DNA|hAT-Charlie -73583 NM_012482 23528 Hs.59757 NM_012482 HPRD:11702 ZNF281 ZBP-99|ZNP-99 zinc finger protein 281 protein-coding 13-PTNLD9-TUMOR_peak_43398 chr6 1064045 1064365 + 26.17310 NA intron (NR_027115, intron 1 of 4) intron (NR_027115, intron 1 of 4) 37362 NR_027116 285768 Hs.209463 NR_027115 LOC285768 - uncharacterized LOC285768 ncRNA 13-PTNLD9-TUMOR_peak_29456 chr2 197852693 197852912 + 26.17299 NA 3' UTR (NM_001195144, exon 28 of 28) 3' UTR (NM_001195144, exon 28 of 28) -61348 NM_024989 80055 Hs.229988 NM_024989 HPRD:10147 PGAP1 Bst1|ISPD3024|MRT42|SPG67 post-GPI attachment to proteins 1 protein-coding 13-PTNLD9-TUMOR_peak_45216 chr6 46893394 46893637 + 26.12652 NA intron (NM_015234, intron 1 of 20) intron (NM_015234, intron 1 of 20) -3801 NM_001098518 221395 Hs.362806 NM_015234 HPRD:11010 GPR116 KPG_001 G protein-coupled receptor 116 protein-coding 13-PTNLD9-TUMOR_peak_40959 chr5 57137524 57137752 + 26.12652 NA Intergenic Intergenic 57351 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LOC101928539 - uncharacterized LOC101928539 ncRNA 13-PTNLD9-TUMOR_peak_48521 chr7 100143117 100143619 + 26.12652 NA intron (NM_006076, intron 1 of 11) intron (NM_006076, intron 1 of 11) 6534 NM_006076 3268 Hs.521083 NM_006076 HPRD:04932 AGFG2 HRBL|RABR ArfGAP with FG repeats 2 protein-coding 13-PTNLD9-TUMOR_peak_22250 chr17 79068733 79069055 + 26.12232 NA intron (NM_006340, intron 6 of 14) intron (NM_006340, intron 6 of 14) 30279 NR_030394 724027 NR_030394 MIR657 MIRN657|hsa-mir-657 microRNA 657 ncRNA 13-PTNLD9-TUMOR_peak_49232 chr7 135338172 135338336 + 26.10706 NA Intergenic Intergenic -8967 NM_001130929 647087 Hs.200022 NM_001130929 C7orf73 PL-5283 chromosome 7 open reading frame 73 protein-coding 13-PTNLD9-TUMOR_peak_10628 chr11 74408019 74408345 + 26.10706 NA intron (NM_001278473, intron 10 of 10) intron (NM_001278473, intron 10 of 10) 23200 NR_039845 100616402 NR_039845 MIR4696 - microRNA 4696 ncRNA 13-PTNLD9-TUMOR_peak_12007 chr12 6888142 6888389 + 26.10706 NA TTS (NM_002286) TTS (NM_002286) 6595 NM_002286 3902 Hs.409523 NM_002286 HPRD:01077 LAG3 CD223 lymphocyte-activation gene 3 protein-coding 13-PTNLD9-TUMOR_peak_53280 chr9 41727945 41728157 + 26.10392 NA Intergenic Intergenic -118507 NR_003528 401509 Hs.449445 NM_001032297 ENSG00000198416 ZNF658B - zinc finger protein 658B, pseudogene pseudo 13-PTNLD9-TUMOR_peak_41774 chr5 113142037 113142347 + 26.09362 NA Intergenic Intergenic 292801 NM_022828 64848 Hs.231942 NM_022828 HPRD:11690 YTHDC2 CAHL YTH domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_40949 chr5 56778494 56778945 + 26.08597 NA promoter-TSS (NM_001017992) promoter-TSS (NM_001017992) -83 NM_001017992 345651 Hs.482167 NM_001017992 HPRD:18598 ACTBL2 ACT actin, beta-like 2 protein-coding 13-PTNLD9-TUMOR_peak_6366 chr10 5626949 5627287 + 26.08244 NA Intergenic Intergenic -58909 NR_120497 100132159 Hs.239600 NR_120496 CALML3-AS1 - CALML3 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_5941 chr1 235110889 235111233 + 26.06902 NA Intergenic Intergenic 180191 NR_002956 677802 Hs.744743 NR_002956 SNORA14B ACA14b small nucleolar RNA, H/ACA box 14B snoRNA 13-PTNLD9-TUMOR_peak_2080 chr1 65363852 65364509 + 26.06902 NA intron (NM_002227, intron 1 of 24) intron (NM_002227, intron 1 of 24) 68007 NM_002227 3716 Hs.207538 NM_002227 HPRD:00992 JAK1 JAK1A|JAK1B|JTK3 Janus kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_11242 chr11 112796291 112796625 + 26.06902 NA Intergenic HERVK3-int|LTR|ERVK -35511 NM_181351 4684 Hs.503878 NM_000615 HPRD:00301 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 13-PTNLD9-TUMOR_peak_50304 chr8 22560984 22561238 + 26.06013 NA Intergenic CpG -10296 NM_004430 1960 Hs.534313 NM_004430 HPRD:03881 EGR3 EGR-3|PILOT early growth response 3 protein-coding 13-PTNLD9-TUMOR_peak_51572 chr8 108113592 108113818 + 26.06013 NA Intergenic Intergenic -331233 NM_139166 137735 Hs.374668 NM_139166 HPRD:11608 ABRA STARS actin-binding Rho activating protein protein-coding 13-PTNLD9-TUMOR_peak_7650 chr10 72424489 72424829 + 26.03512 NA Intergenic Intergenic -7900 NM_139155 140766 Hs.352156 NM_080722 HPRD:06329 ADAMTS14 - ADAM metallopeptidase with thrombospondin type 1 motif, 14 protein-coding 13-PTNLD9-TUMOR_peak_31682 chr20 56262365 56262668 + 26.03387 NA intron (NM_199171, intron 1 of 3) MER117|DNA|hAT-Charlie 3164 NM_001255976 56937 Hs.517155 NM_020182 HPRD:09415 PMEPA1 STAG1|TMEPAI prostate transmembrane protein, androgen induced 1 protein-coding 13-PTNLD9-TUMOR_peak_18476 chr16 10215336 10215709 + 26.03387 NA intron (NM_000833, intron 3 of 13) intron (NM_000833, intron 3 of 13) 60402 NM_001134408 2903 Hs.411472 NM_000833 HPRD:00698 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate receptor, ionotropic, N-methyl D-aspartate 2A protein-coding 13-PTNLD9-TUMOR_peak_22646 chr18 12838225 12838451 + 26.03387 NA intron (NM_001207013, intron 2 of 10) intron (NM_001207013, intron 2 of 10) 45996 NM_080423 5771 Hs.654527 NM_002828 HPRD:06768 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase, non-receptor type 2 protein-coding 13-PTNLD9-TUMOR_peak_41793 chr5 114701941 114702277 + 26.01584 NA Intergenic Intergenic -69651 NM_001040440 153733 Hs.436121 NM_152549 HPRD:11346 CCDC112 MBC1 coiled-coil domain containing 112 protein-coding 13-PTNLD9-TUMOR_peak_44752 chr6 35005950 35006197 + 26.01510 NA intron (NM_015245, intron 11 of 23) intron (NM_015245, intron 11 of 23) 103114 NM_001261818 6954 Hs.435371 NM_018679 HPRD:01749 TCP11 D6S230E|FPPR t-complex 11, testis-specific protein-coding 13-PTNLD9-TUMOR_peak_19715 chr16 71123548 71123910 + 25.96071 NA intron (NM_001270974, intron 11 of 85) intron (NM_001270974, intron 11 of 85) 140896 NM_001270974 54768 Hs.461229 NM_017558 HPRD:11042 HYDIN CILD5|HYDIN1|HYDIN2|PPP1R31 HYDIN, axonemal central pair apparatus protein protein-coding 13-PTNLD9-TUMOR_peak_43798 chr6 11806903 11807313 + 25.95664 NA Intergenic Intergenic -27828 NM_032744 84830 Hs.126409 NM_032744 HPRD:12836 ADTRP AIG1L|C6orf105|dJ413H6.1 androgen-dependent TFPI-regulating protein protein-coding 13-PTNLD9-TUMOR_peak_44863 chr6 37210224 37210760 + 25.95576 NA intron (NM_001286401, intron 1 of 2) intron (NM_001286401, intron 1 of 2) 14921 NM_145316 221468 Hs.520101 NM_145316 HPRD:12848 TMEM217 C6orf128|dJ355M6.2 transmembrane protein 217 protein-coding 13-PTNLD9-TUMOR_peak_27066 chr2 64587074 64587474 + 25.95576 NA Intergenic Intergenic -94053 NM_014181 29094 Hs.372208 NM_014181 HPRD:13708 LGALSL GRP lectin, galactoside-binding-like protein-coding 13-PTNLD9-TUMOR_peak_54167 chr9 100639563 100639878 + 25.95098 NA Intergenic Intergenic 24183 NM_004473 2304 Hs.159234 NM_004473 HPRD:04014 FOXE1 FKHL15|FOXE2|HFKH4|HFKL5|TITF2|TTF-2|TTF2 forkhead box E1 (thyroid transcription factor 2) protein-coding 13-PTNLD9-TUMOR_peak_39326 chr4 129438900 129439152 + 25.93677 NA Intergenic Intergenic -229042 NM_006320 10424 Hs.507910 NM_006320 HPRD:09665 PGRMC2 DG6|PMBP progesterone receptor membrane component 2 protein-coding 13-PTNLD9-TUMOR_peak_28216 chr2 119671582 119672062 + 25.93496 NA Intergenic MER94|DNA|hAT-Blackjack -27923 NM_006770 8685 Hs.67726 NM_006770 HPRD:05337 MARCO SCARA2 macrophage receptor with collagenous structure protein-coding 13-PTNLD9-TUMOR_peak_36299 chr3 147016236 147016695 + 25.93496 NA Intergenic UCON8|Unknown|Unknown 93752 NR_033119 84107 Hs.415766 NM_032153 HPRD:12340 ZIC4 - Zic family member 4 protein-coding 13-PTNLD9-TUMOR_peak_50429 chr8 27219349 27219937 + 25.90704 NA intron (NM_173174, intron 6 of 35) intron (NM_173174, intron 6 of 35) 36562 NM_173175 2185 Hs.491322 NM_004103 HPRD:03131 PTK2B CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK protein tyrosine kinase 2 beta protein-coding 13-PTNLD9-TUMOR_peak_53746 chr9 82379369 82379657 + 25.89924 NA Intergenic Intergenic -59932 NR_121213 101927477 Hs.571630 NR_121212 LINC01507 - long intergenic non-protein coding RNA 1507 ncRNA 13-PTNLD9-TUMOR_peak_52917 chr9 22103328 22103555 + 25.89209 NA intron (NR_047534, intron 4 of 8) intron (NR_047534, intron 4 of 8) -94129 NM_078487 1030 Hs.72901 NM_004936 HPRD:02696 CDKN2B CDK4I|INK4B|MTS2|P15|TP15|p15INK4b cyclin-dependent kinase inhibitor 2B (p15, inhibits CDK4) protein-coding 13-PTNLD9-TUMOR_peak_9656 chr11 45303708 45303896 + 25.89209 NA intron (NM_001247987, intron 1 of 7) intron (NM_001247987, intron 1 of 7) 4082 NM_020826 57586 Hs.436643 NM_020826 HPRD:12128 SYT13 - synaptotagmin XIII protein-coding 13-PTNLD9-TUMOR_peak_7294 chr10 48730210 48730536 + 25.85952 NA Intergenic Intergenic 76612 NM_001042357 26095 Hs.440733 NM_015605 HPRD:10898 PTPN20B CT126|PTPN20A|bA142I17.1|bA42B19.1|hPTPN20 protein tyrosine phosphatase, non-receptor type 20B protein-coding 13-PTNLD9-TUMOR_peak_24797 chr19 36532781 36533028 + 25.85952 NA intron (NM_152658, intron 1 of 3) AluJr|SINE|Alu -9107 NM_015526 25999 Hs.466539 NM_015526 HPRD:09572 CLIP3 CLIPR-59|CLIPR59|RSNL1 CAP-GLY domain containing linker protein 3 protein-coding 13-PTNLD9-TUMOR_peak_53763 chr9 84203162 84203455 + 25.85952 NA intron (NM_005077, intron 16 of 19) intron (NM_005077, intron 16 of 19) 100288 NM_005077 7088 Hs.197320 NM_005077 HPRD:02557 TLE1 ESG|ESG1|GRG1 transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_37693 chr4 3939612 3939980 + 25.84902 NA Intergenic Intergenic 17352 NR_024253 348926 Hs.591720 NR_024253 FAM86EP - family with sequence similarity 86, member A pseudogene pseudo 13-PTNLD9-TUMOR_peak_6101 chr1 243761790 243762076 + 25.81659 NA intron (NM_181690, intron 7 of 13) intron (NM_181690, intron 7 of 13) 244651 NM_181690 10000 Hs.498292 NM_005465 HPRD:06441 AKT3 MPPH|PKB-GAMMA|PKBG|PRKBG|RAC-PK-gamma|RAC-gamma|STK-2 v-akt murine thymoma viral oncogene homolog 3 protein-coding 13-PTNLD9-TUMOR_peak_22304 chr17 79961647 79961989 + 25.81556 NA intron (NR_045351, intron 6 of 14) CpG 18967 NM_144998 201254 Hs.37616 NM_144998 HPRD:18121 STRA13 CENP-X|CENPX|D9|FAAP10|MHF2 stimulated by retinoic acid 13 protein-coding 13-PTNLD9-TUMOR_peak_52182 chr8 134587639 134588021 + 25.80108 NA Intergenic Intergenic -3647 NM_003033 6482 Hs.374257 NM_003033 HPRD:06219 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_49119 chr7 131230874 131231121 + 25.80076 NA intron (NM_001018111, intron 1 of 8) intron (NM_001018111, intron 1 of 8) 10379 NM_005397 5420 Hs.744213 NM_005397 HPRD:04025 PODXL Gp200|PC|PCLP|PCLP-1 podocalyxin-like protein-coding 13-PTNLD9-TUMOR_peak_47403 chr7 46184972 46185315 + 25.78721 NA Intergenic Intergenic -224272 NM_001013398 3486 Hs.450230 NM_000598 HPRD:00899 IGFBP3 BP-53|IBP3 insulin-like growth factor binding protein 3 protein-coding 13-PTNLD9-TUMOR_peak_44735 chr6 34577470 34577700 + 25.78248 NA intron (NM_022758, intron 2 of 3) intron (NM_022758, intron 2 of 3) -53475 NM_001252294 25803 Hs.485158 NM_012391 HPRD:12176 SPDEF PDEF|bA375E1.3 SAM pointed domain containing ETS transcription factor protein-coding 13-PTNLD9-TUMOR_peak_54060 chr9 97545476 97545855 + 25.78248 NA intron (NM_032823, intron 3 of 14) intron (NM_032823, intron 3 of 14) 23734 NM_001193329 84909 Hs.434253 NM_032823 HPRD:07476 C9orf3 AOPEP|AP-O|APO|C90RF3|ONPEP chromosome 9 open reading frame 3 protein-coding 13-PTNLD9-TUMOR_peak_27327 chr2 75072630 75072828 + 25.78248 NA intron (NM_000189, intron 1 of 17) intron (NM_000189, intron 1 of 17) 12947 NM_000189 3099 Hs.406266 NM_000189 HPRD:03080 HK2 HKII|HXK2 hexokinase 2 protein-coding 13-PTNLD9-TUMOR_peak_48272 chr7 90794818 90795077 + 25.76765 NA intron (NM_001287137, intron 12 of 12) intron (NM_001287137, intron 12 of 12) -98836 NM_003505 8321 Hs.94234 NM_003505 HPRD:04558 FZD1 - frizzled class receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_43553 chr6 3809202 3809445 + 25.76765 NA Intergenic Intergenic -40309 NM_012135 26240 Hs.140944 NM_012135 HPRD:16883 FAM50B D6S2654E|X5L family with sequence similarity 50, member B protein-coding 13-PTNLD9-TUMOR_peak_39749 chr4 158946358 158946542 + 25.76477 NA Intergenic MLT1G|LTR|ERVL-MaLR 147268 NM_016613 51313 Hs.567498 NM_016613 HPRD:13194 FAM198B AD036|C4orf18 family with sequence similarity 198, member B protein-coding 13-PTNLD9-TUMOR_peak_46790 chr7 5588935 5589261 + 25.76477 NA Intergenic Intergenic -18866 NM_001101 60 Hs.520640 NM_001101 HPRD:00032 ACTB BRWS1|PS1TP5BP1 actin, beta protein-coding 13-PTNLD9-TUMOR_peak_50305 chr8 22601221 22601580 + 25.74849 NA intron (NM_144962, intron 4 of 6) AmnSINE1|SINE|Deu -50585 NM_004430 1960 Hs.534313 NM_004430 HPRD:03881 EGR3 EGR-3|PILOT early growth response 3 protein-coding 13-PTNLD9-TUMOR_peak_51397 chr8 101428004 101428566 + 25.73467 NA Intergenic Intergenic 33294 NR_039681 100616451 NR_039681 miRBase:MI0016822 MIR4471 - microRNA 4471 ncRNA 13-PTNLD9-TUMOR_peak_40641 chr5 37668698 37668936 + 25.73191 NA intron (NM_018034, intron 10 of 17) intron (NM_018034, intron 10 of 17) 166107 NM_001278098 2668 Hs.248114 NM_000514 HPRD:02906 GDNF ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 13-PTNLD9-TUMOR_peak_29388 chr2 192447150 192447372 + 25.73191 NA Intergenic MLT1J1|LTR|ERVL-MaLR -95537 NM_001254736 64859 Hs.591610 NM_022837 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_11140 chr11 108368410 108368660 + 25.73136 NA intron (NM_153705, intron 1 of 7) CpG 624 NM_153705 143888 Hs.83286 NM_153705 HPRD:13773 KDELC2 - KDEL (Lys-Asp-Glu-Leu) containing 2 protein-coding 13-PTNLD9-TUMOR_peak_33675 chr3 9217150 9217425 + 25.70480 NA intron (NM_001033117, intron 1 of 21) intron (NM_001033117, intron 1 of 21) -16890 NR_121664 101927416 Hs.475364 NR_121663 LOC101927416 - uncharacterized LOC101927416 ncRNA 13-PTNLD9-TUMOR_peak_1884 chr1 55530539 55530946 + 25.69761 NA TTS (NM_174936) TTS (NM_174936) 24847 NR_110451 255738 Hs.18844 NM_174936 HPRD:07080 PCSK9 FH3|HCHOLA3|LDLCQ1|NARC-1|NARC1|PC9 proprotein convertase subtilisin/kexin type 9 protein-coding 13-PTNLD9-TUMOR_peak_32025 chr21 26742620 26742868 + 25.69761 NA Intergenic Intergenic 61269 NR_024027 54072 Hs.234016 NM_058184 HPRD:10748 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 13-PTNLD9-TUMOR_peak_41668 chr5 105733435 105733753 + 25.67358 NA Intergenic Intergenic 613121 NR_104671 102467213 Hs.570923 NR_104671 LOC102467213 - uncharacterized LOC102467213 ncRNA 13-PTNLD9-TUMOR_peak_28132 chr2 113958391 113958656 + 25.66464 NA intron (NM_012455, intron 16 of 16) intron (NM_012455, intron 16 of 16) 26963 NM_012455 23550 Hs.516306 NM_012455 HPRD:15191 PSD4 EFA6B|TIC pleckstrin and Sec7 domain containing 4 protein-coding 13-PTNLD9-TUMOR_peak_21899 chr17 70417404 70417678 + 25.64250 NA intron (NR_036488, intron 3 of 3) intron (NR_036488, intron 3 of 3) 171402 NR_036488 100499467 Hs.157726 NR_036488 LINC00673 LINC00511 long intergenic non-protein coding RNA 673 ncRNA 13-PTNLD9-TUMOR_peak_28740 chr2 152708390 152708592 + 25.64250 NA intron (NM_001005746, intron 12 of 13) intron (NM_001005746, intron 12 of 13) -23482 NM_012097 26225 Hs.470233 NM_012097 ARL5A ARFLP5|ARL5 ADP-ribosylation factor-like 5A protein-coding 13-PTNLD9-TUMOR_peak_37076 chr3 186600713 186600923 + 25.64250 NA Intergenic MER44B|DNA|TcMar-Tigger -26906 NR_046662 100874095 Hs.80485 NR_046662 ENSG00000226482 ADIPOQ-AS1 - ADIPOQ antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_52761 chr9 13841855 13842086 + 25.64222 NA Intergenic Intergenic -86000 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA 13-PTNLD9-TUMOR_peak_36801 chr3 177003831 177004185 + 25.64197 NA Intergenic MIRb|SINE|MIR -8222 NR_047465 100820709 Hs.518409 NR_047465 LINC00501 - long intergenic non-protein coding RNA 501 ncRNA 13-PTNLD9-TUMOR_peak_44726 chr6 34203469 34203751 + 25.64197 NA promoter-TSS (NM_002131) promoter-TSS (NM_002131) -967 NM_145903 3159 Hs.518805 NM_002131 HPRD:02829 HMGA1 HMG-R|HMGA1A|HMGIY high mobility group AT-hook 1 protein-coding 13-PTNLD9-TUMOR_peak_43452 chr6 2476670 2476913 + 25.63837 NA Intergenic Intergenic 158507 NM_152554 154386 Hs.680574 NM_152554 C6orf195 bA145H9.2 chromosome 6 open reading frame 195 protein-coding 13-PTNLD9-TUMOR_peak_37192 chr3 189781992 189782276 + 25.62989 NA intron (NM_001134418, intron 1 of 14) intron (NM_001134418, intron 1 of 14) 56774 NM_018192 55214 Hs.374191 NM_018192 HPRD:17270 LEPREL1 MCVD|MLAT4|P3H2 leprecan-like 1 protein-coding 13-PTNLD9-TUMOR_peak_45662 chr6 87425443 87425714 + 25.62989 NA Intergenic AluSx|SINE|Alu -221446 NM_000865 3354 Hs.1611 NM_000865 HPRD:01635 HTR1E 5-HT1E 5-hydroxytryptamine (serotonin) receptor 1E, G protein-coupled protein-coding 13-PTNLD9-TUMOR_peak_50495 chr8 29351266 29351578 + 25.62989 NA Intergenic L2|LINE|L2 -143155 NM_001394 1846 Hs.417962 NM_001394 HPRD:04123 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 13-PTNLD9-TUMOR_peak_51712 chr8 119451916 119452217 + 25.62989 NA intron (NR_109794, intron 3 of 4) intron (NR_109794, intron 3 of 4) -181174 NR_038210 552860 Hs.571527 NR_038210 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_37029 chr3 185463258 185463578 + 25.62989 NA intron (NM_001007225, intron 2 of 14) intron (NM_001007225, intron 2 of 14) 32378 NR_027317 646600 Hs.647949 NR_027317 ENSG00000163915 C3orf65 - chromosome 3 open reading frame 65 ncRNA 13-PTNLD9-TUMOR_peak_39347 chr4 130264060 130264294 + 25.62989 NA Intergenic Intergenic 246895 NM_001099783 132321 Hs.567679 NM_173487 HPRD:14049 C4orf33 - chromosome 4 open reading frame 33 protein-coding 13-PTNLD9-TUMOR_peak_10772 chr11 79874124 79874345 + 25.62989 NA Intergenic Intergenic 599612 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LOC101928944 - uncharacterized LOC101928944 ncRNA 13-PTNLD9-TUMOR_peak_41721 chr5 110702697 110703152 + 25.62989 NA intron (NM_001744, intron 2 of 10) MSTD|LTR|ERVL-MaLR 142977 NM_001744 814 Hs.591269 NM_001744 CAMK4 CaMK IV|CaMK-GR|IV|caMK calcium/calmodulin-dependent protein kinase IV protein-coding 13-PTNLD9-TUMOR_peak_323 chr1 9340521 9340706 + 25.62989 NA Intergenic Intergenic -12328 NM_025106 80176 Hs.8261 NM_025106 HPRD:18106 SPSB1 SSB-1|SSB1 splA/ryanodine receptor domain and SOCS box containing 1 protein-coding 13-PTNLD9-TUMOR_peak_13345 chr12 72404193 72404453 + 25.60276 NA intron (NM_173353, intron 8 of 10) intron (NM_173353, intron 8 of 10) 71697 NM_173353 121278 Hs.736576 NM_173353 HPRD:09594 TPH2 ADHD7|NTPH tryptophan hydroxylase 2 protein-coding 13-PTNLD9-TUMOR_peak_10217 chr11 65239574 65239877 + 25.59839 NA Intergenic Intergenic -25508 NR_002819 378938 Hs.621695 NR_002819 ENSG00000251562 MALAT1 HCN|LINC00047|MALAT-1|NCRNA00047|NEAT2|PRO2853|mascRNA metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_1687 chr1 48027220 48027642 + 25.59181 NA Intergenic Intergenic 125742 NM_004474 2306 Hs.166188 NM_004474 HPRD:03735 FOXD2 FKHL17|FREAC-9|FREAC9 forkhead box D2 protein-coding 13-PTNLD9-TUMOR_peak_50004 chr8 7299202 7299586 + 25.57217 NA Intergenic Intergenic 10493 NM_058207 10407 Hs.2717 NM_016512 HPRD:07583 SPAG11B EDDM2B|EP2|EP2C|EP2D|HE2|HE2C|SPAG11 sperm associated antigen 11B protein-coding 13-PTNLD9-TUMOR_peak_46951 chr7 17572593 17573022 + 25.56499 NA intron (NR_110013, intron 1 of 3) intron (NR_110013, intron 1 of 3) 25726 NR_110013 101927630 Hs.583400 NR_110013 LOC101927630 - uncharacterized LOC101927630 ncRNA 13-PTNLD9-TUMOR_peak_1033 chr1 33807941 33808227 + 25.56187 NA intron (NM_198040, intron 8 of 13) intron (NM_198040, intron 8 of 13) 7415 NM_004427 1912 Hs.524271 NM_004427 HPRD:10340 PHC2 EDR2|HPH2|PH2 polyhomeotic homolog 2 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_26974 chr2 56006939 56007126 + 25.56187 NA Intergenic MER44B|DNA|TcMar-Tigger -85987 NM_033109 87178 Hs.388733 NM_033109 HPRD:18493 PNPT1 COXPD13|DFNB70|OLD35|PNPASE|old-35 polyribonucleotide nucleotidyltransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_18356 chr16 4349147 4349369 + 25.55348 NA Intergenic Intergenic -26257 NM_003223 7023 Hs.513305 NM_003223 HPRD:11795 TFAP4 AP-4|bHLHc41 transcription factor AP-4 (activating enhancer binding protein 4) protein-coding 13-PTNLD9-TUMOR_peak_20069 chr16 88365846 88366206 + 25.54859 NA Intergenic Intergenic -127853 NM_001127464 84627 Hs.54925 NM_001127464 ENSG00000225614 ZNF469 BCS|BCS1 zinc finger protein 469 protein-coding 13-PTNLD9-TUMOR_peak_36111 chr3 138640699 138641017 + 25.52111 NA Intergenic MIRc|SINE|MIR 22004 NR_121649 103344930 Hs.195033 NR_121649 LINC01391 - long intergenic non-protein coding RNA 1391 ncRNA 13-PTNLD9-TUMOR_peak_43638 chr6 6678491 6678827 + 25.52111 NA Intergenic MIRb|SINE|MIR -55600 NR_026970 285780 Hs.655737 NM_173675 HPRD:08165 LY86-AS1 LY86-AS|LY86AS LY86 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_6107 chr1 244090244 244090573 + 25.51849 NA intron (NR_033883, intron 1 of 11) intron (NR_033883, intron 1 of 11) 9704 NR_033883 339529 Hs.209374 NR_033883 ENSG00000226828 LOC339529 - uncharacterized LOC339529 ncRNA 13-PTNLD9-TUMOR_peak_26268 chr2 20638217 20638495 + 25.51849 NA Intergenic Intergenic -8479 NM_004040 388 Hs.502876 NM_004040 HPRD:01321 RHOB ARH6|ARHB|MST081|MSTP081|RHOH6 ras homolog family member B protein-coding 13-PTNLD9-TUMOR_peak_5292 chr1 206848251 206848512 + 25.49928 NA Intergenic Intergenic -9984 NM_032960 9261 Hs.643566 NM_004759 HPRD:11882 MAPKAPK2 MAPKAP-K2|MK-2|MK2 mitogen-activated protein kinase-activated protein kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_29593 chr2 204443892 204444327 + 25.48103 NA Intergenic L4|LINE|RTE -44051 NM_203365 65059 Hs.471162 NM_025252 HPRD:12356 RAPH1 ALS2CR18|ALS2CR9|LPD|PREL-2|PREL2|RMO1|RalGDS/AF-6 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 protein-coding 13-PTNLD9-TUMOR_peak_50905 chr8 49701271 49701631 + 25.47882 NA Intergenic Intergenic -53581 NR_024605 79645 Hs.23245 NM_024593 HPRD:08565 EFCAB1 - EF-hand calcium binding domain 1 protein-coding 13-PTNLD9-TUMOR_peak_23394 chr18 61442455 61442704 + 25.46739 NA promoter-TSS (NM_003784) promoter-TSS (NM_003784) -30 NM_001261831 8710 Hs.138202 NM_003784 HPRD:04524 SERPINB7 MEGSIN|PPKN|TP55 serpin peptidase inhibitor, clade B (ovalbumin), member 7 protein-coding 13-PTNLD9-TUMOR_peak_54278 chr9 106566750 106566959 + 25.46739 NA Intergenic Intergenic -195136 NR_109803 101928523 NR_109803 LOC101928523 - uncharacterized LOC101928523 ncRNA 13-PTNLD9-TUMOR_peak_3059 chr1 119331076 119331268 + 25.46739 NA Intergenic L1PA10|LINE|L1 201007 NM_152380 6913 Hs.146196 NM_152380 HPRD:16035 TBX15 TBX14 T-box 15 protein-coding 13-PTNLD9-TUMOR_peak_52355 chr8 142357035 142357258 + 25.46330 NA Intergenic Intergenic 6498 NR_024441 731779 Hs.586414 NR_024441 ENSG00000253595 LINC01300 - long intergenic non-protein coding RNA 1300 ncRNA 13-PTNLD9-TUMOR_peak_52177 chr8 134545449 134545691 + 25.46330 NA intron (NM_173344, intron 2 of 9) intron (NM_173344, intron 2 of 9) 38613 NM_173344 6482 Hs.374257 NM_003033 HPRD:06219 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_32333 chr21 40285043 40285278 + 25.46330 NA intron (NR_120405, intron 2 of 3) intron (NR_120405, intron 2 of 3) 25193 NR_120405 400867 Hs.689509 NR_120405 LOC400867 - uncharacterized LOC400867 ncRNA 13-PTNLD9-TUMOR_peak_31329 chr20 47231203 47231463 + 25.46242 NA Intergenic MER20B|DNA|hAT-Charlie 213087 NM_020820 57580 Hs.153310 NM_020820 HPRD:06066 PREX1 P-REX1 phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1 protein-coding 13-PTNLD9-TUMOR_peak_32226 chr21 36511006 36511260 + 25.45704 NA Intergenic Intergenic -89538 NM_001754 861 Hs.149261 NM_001754 HPRD:01043 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBFA2|EVI-1|PEBP2aB runt-related transcription factor 1 protein-coding 13-PTNLD9-TUMOR_peak_23428 chr18 68051439 68051976 + 25.45704 NA non-coding (NR_110764, exon 1 of 3) non-coding (NR_110764, exon 1 of 3) 120 NR_110764 101060542 Hs.586967 NR_110764 ENSG00000266278 LOC101060542 - uncharacterized LOC101060542 ncRNA 13-PTNLD9-TUMOR_peak_43754 chr6 10760280 10760556 + 25.45533 NA TTS (NM_001286488) TTS (NM_001286488) 12426 NR_104454 81853 Hs.95600 NM_030969 HPRD:15523 TMEM14B - transmembrane protein 14B protein-coding 13-PTNLD9-TUMOR_peak_44159 chr6 24981786 24981986 + 25.45533 NA intron (NM_001286446, intron 1 of 13) MIR|SINE|MIR -45606 NM_001286445 9750 Hs.559459 NM_014722 HPRD:12881 FAM65B C6orf32|DIFF40|DIFF48|MYONAP|PL48 family with sequence similarity 65, member B protein-coding 13-PTNLD9-TUMOR_peak_32479 chr21 44753663 44753941 + 25.45533 NA Intergenic L2|LINE|L2 -1883 NR_103713 100126693 Hs.473952 NR_103713 LINC00322 C21orf136|NCRNA00322 long intergenic non-protein coding RNA 322 ncRNA 13-PTNLD9-TUMOR_peak_25887 chr1_gl000192_random 333505 334047 + 25.45043 NA intron (NR_103556, intron 6 of 45) intron (NR_103556, intron 6 of 45) 73734 NR_103556 100288805 Hs.648712 NR_049745 HYDIN2 HYDINP1 HYDIN2, axonemal central pair apparatus protein (pseudogene) pseudo 13-PTNLD9-TUMOR_peak_50670 chr8 38895686 38895909 + 25.43426 NA intron (NR_027878, intron 11 of 20) L2a|LINE|L2 41292 NM_003816 8754 Hs.591852 NM_003816 HPRD:04091 ADAM9 CORD9|MCMP|MDC9|Mltng ADAM metallopeptidase domain 9 protein-coding 13-PTNLD9-TUMOR_peak_4008 chr1 157998856 157999086 + 25.40460 NA intron (NM_001286349, intron 1 of 12) intron (NM_001286349, intron 1 of 12) 35908 NM_018240 55243 Hs.272234 NM_018240 HPRD:06306 KIRREL NEPH1 kin of IRRE like (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_5606 chr1 225642497 225642770 + 25.40306 NA Intergenic Intergenic -26076 NM_194442 3930 Hs.435166 NM_002296 HPRD:02488 LBR DHCR14B|LMN2R|PHA|TDRD18 lamin B receptor protein-coding 13-PTNLD9-TUMOR_peak_52900 chr9 21711563 21711798 + 25.40016 NA Intergenic Intergenic -90955 NM_002451 4507 Hs.193268 NM_002451 HPRD:01134 MTAP BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus methylthioadenosine phosphorylase protein-coding 13-PTNLD9-TUMOR_peak_37101 chr3 186945650 186945932 + 25.39566 NA intron (NM_001879, intron 11 of 15) intron (NM_001879, intron 11 of 15) -20374 NR_110052 101929106 Hs.640145 NR_110052 ENSG00000198491 LOC101929106 - uncharacterized LOC101929106 ncRNA 13-PTNLD9-TUMOR_peak_47011 chr7 21136604 21136923 + 25.39566 NA Intergenic Intergenic 269846 NR_026673 222901 Hs.722187 NR_026673 ENSG00000219451 RPL23P8 RPL23_4_790 ribosomal protein L23 pseudogene 8 pseudo 13-PTNLD9-TUMOR_peak_31318 chr20 46924205 46924596 + 25.39566 NA Intergenic Intergenic -64254 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 13-PTNLD9-TUMOR_peak_35913 chr3 130935780 130936017 + 25.39289 NA intron (NM_001146003, intron 13 of 15) intron (NM_001146003, intron 13 of 15) -144791 NR_002949 152195 Hs.380350 NM_194289 HPRD:14093 NUDT16P1 NUDT16P nudix (nucleoside diphosphate linked moiety X)-type motif 16 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_41275 chr5 73546869 73547323 + 25.39289 NA Intergenic Intergenic 57054 NR_105009 102503429 Hs.519391 NR_105009 LINC01335 - long intergenic non-protein coding RNA 1335 ncRNA 13-PTNLD9-TUMOR_peak_53207 chr9 38008315 38008578 + 25.39289 NA intron (NM_003028, intron 2 of 5) intron (NM_003028, intron 2 of 5) 60764 NM_003028 6461 Hs.521482 NM_003028 SHB bA3J10.2 Src homology 2 domain containing adaptor protein B protein-coding 13-PTNLD9-TUMOR_peak_52721 chr9 7452479 7452694 + 25.38044 NA Intergenic Intergenic 347213 NM_033428 90871 Hs.7517 NM_033428 HPRD:12939 TMEM261 C9orf123 transmembrane protein 261 protein-coding 13-PTNLD9-TUMOR_peak_44834 chr6 36881959 36882466 + 25.38044 NA intron (NM_001286637, intron 5 of 8) intron (NM_001286637, intron 5 of 8) 28572 NM_001286635 221477 Hs.433381 NM_152734 HPRD:12905 C6orf89 BRAP chromosome 6 open reading frame 89 protein-coding 13-PTNLD9-TUMOR_peak_20826 chr17 29923715 29923998 + 25.38044 NA Intergenic Intergenic 21426 NR_029856 100126356 NR_029856 miRBase:MI0000769 MIR365B MIR365-2|MIRN365-2|hsa-mir-365b microRNA 365b ncRNA 13-PTNLD9-TUMOR_peak_6166 chr1 246303063 246303321 + 25.36867 NA intron (NM_022743, intron 5 of 11) intron (NM_022743, intron 5 of 11) 277522 NM_022743 64754 Hs.567571 NM_022743 HPRD:12297 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_19458 chr16 57850265 57850578 + 25.36867 NA 3' UTR (NM_001278081, exon 5 of 5) 3' UTR (NM_001278081, exon 5 of 5) 5872 NM_001278081 388282 Hs.434720 NM_001278081 LOC388282 - uncharacterized LOC388282 protein-coding 13-PTNLD9-TUMOR_peak_35739 chr3 126501427 126501698 + 25.36867 NA intron (NM_032343, intron 4 of 7) intron (NM_032343, intron 4 of 7) 78499 NM_032343 84303 Hs.518119 NM_032343 HPRD:13047 CHCHD6 CHCM1|PPP1R23 coiled-coil-helix-coiled-coil-helix domain containing 6 protein-coding 13-PTNLD9-TUMOR_peak_9491 chr11 34214406 34214868 + 25.36867 NA intron (NM_145804, intron 3 of 16) Plat_L3|LINE|CR1 87526 NM_001144030 55226 Hs.577281 NM_024662 HPRD:10964 NAT10 ALP|NET43 N-acetyltransferase 10 (GCN5-related) protein-coding 13-PTNLD9-TUMOR_peak_22027 chr17 73840914 73841175 + 25.35092 NA promoter-TSS (NM_199242) promoter-TSS (NM_199242) -246 NM_199242 201294 Hs.41045 NM_199242 HPRD:10598 UNC13D FHL3|HLH3|HPLH3|Munc13-4 unc-13 homolog D (C. elegans) protein-coding 13-PTNLD9-TUMOR_peak_43714 chr6 8627808 8628017 + 25.34027 NA intron (NR_038980, intron 3 of 4) intron (NR_038980, intron 3 of 4) -24530 NR_004855 728655 Hs.214343 NR_004855 ENSG00000251164 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 13-PTNLD9-TUMOR_peak_42581 chr5 148865347 148866172 + 25.33417 NA Intergenic MLT1J1|LTR|ERVL-MaLR 55550 NR_029686 406937 NR_029686 miRBase:MI0000461 MIR145 MIRN145|miR-145|miRNA145 microRNA 145 ncRNA 13-PTNLD9-TUMOR_peak_26106 chr2 10633588 10634120 + 25.33029 NA Intergenic Intergenic 44000 NR_110597 101929715 Hs.634550 NR_110597 LOC101929715 - uncharacterized LOC101929715 ncRNA 13-PTNLD9-TUMOR_peak_23293 chr18 55989290 55989528 + 25.32308 NA intron (NM_001243960, intron 6 of 28) intron (NM_001243960, intron 6 of 28) 100655 NM_001144966 23327 Hs.185677 NM_015277 HPRD:05903 NEDD4L NEDD4-2|NEDD4.2|RSP5|hNEDD4-2 neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_32492 chr21 44897816 44898189 + 25.32044 NA non-coding (NR_026863, exon 1 of 4) non-coding (NR_026863, exon 1 of 4) 101 NR_026863 114038 Hs.592161 NM_153752 HPRD:10770 LINC00313 C21orf84|NCRNA00313 long intergenic non-protein coding RNA 313 ncRNA 13-PTNLD9-TUMOR_peak_41036 chr5 61770901 61771290 + 25.30387 NA intron (NM_001134779, intron 8 of 29) AluJb|SINE|Alu 56384 NM_001134779 51194 Hs.482269 NM_016338 HPRD:10003 IPO11 RanBP11 importin 11 protein-coding 13-PTNLD9-TUMOR_peak_4007 chr1 157989410 157989556 + 25.29143 NA intron (NM_001286349, intron 1 of 12) intron (NM_001286349, intron 1 of 12) 26420 NM_018240 55243 Hs.272234 NM_018240 HPRD:06306 KIRREL NEPH1 kin of IRRE like (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_51993 chr8 128822376 128822720 + 25.29042 NA Intergenic Intergenic 14340 NR_031609 100302185 NR_031609 miRBase:MI0006337 MIR1204 hsa-mir-1204 microRNA 1204 ncRNA 13-PTNLD9-TUMOR_peak_14041 chr12 120794474 120794882 + 25.25510 NA intron (NM_002442, intron 9 of 14) intron (NM_002442, intron 9 of 14) 12305 NM_002442 4440 Hs.158311 NM_002442 HPRD:04509 MSI1 - musashi RNA-binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_34571 chr3 49938065 49938516 + 25.25435 NA intron (NM_001244937, intron 1 of 18) intron (NM_001244937, intron 1 of 18) 3016 NM_001244937 4486 Hs.517973 NM_002447 HPRD:02545 MST1R CD136|CDw136|PTK8|RON macrophage stimulating 1 receptor (c-met-related tyrosine kinase) protein-coding 13-PTNLD9-TUMOR_peak_52955 chr9 27125155 27125486 + 25.25430 NA intron (NM_001290078, intron 1 of 20) intron (NM_001290078, intron 1 of 20) 16181 NM_001290078 7010 Hs.89640 NM_000459 HPRD:02571 TEK CD202B|TIE-2|TIE2|VMCM|VMCM1 TEK tyrosine kinase, endothelial protein-coding 13-PTNLD9-TUMOR_peak_16190 chr14 70883661 70883869 + 25.24710 NA promoter-TSS (NM_001202547) promoter-TSS (NM_001202547) 42 NM_001202547 100529257 Hs.443661 NM_001202547 SYNJ2BP-COX16 - SYNJ2BP-COX16 readthrough protein-coding 13-PTNLD9-TUMOR_peak_5090 chr1 203481977 203482445 + 25.24241 NA Intergenic Intergenic 18940 NM_014359 26254 Hs.632468 NM_014359 HPRD:05498 OPTC OPT opticin protein-coding 13-PTNLD9-TUMOR_peak_37533 chr4 645215 645448 + 25.23960 NA intron (NM_000283, intron 3 of 21) CpG -1635 NM_001145292 5158 Hs.623810 NM_000283 HPRD:01571 PDE6B CSNB3|CSNBAD2|PDEB|RP40|rd1 phosphodiesterase 6B, cGMP-specific, rod, beta protein-coding 13-PTNLD9-TUMOR_peak_19264 chr16 48048765 48048997 + 25.23960 NA Intergenic MIR|SINE|MIR -127840 NR_110649 100507534 Hs.407601 NR_110649 ENSG00000261325 LOC100507534 - uncharacterized LOC100507534 ncRNA 13-PTNLD9-TUMOR_peak_54161 chr9 100564683 100564821 + 25.21351 NA Intergenic Intergenic -50785 NM_004473 2304 Hs.159234 NM_004473 HPRD:04014 FOXE1 FKHL15|FOXE2|HFKH4|HFKL5|TITF2|TTF-2|TTF2 forkhead box E1 (thyroid transcription factor 2) protein-coding 13-PTNLD9-TUMOR_peak_23049 chr18 43735611 43735954 + 25.21351 NA Intergenic Intergenic -18206 NM_001008239 147339 Hs.116486 NM_145055 HPRD:12690 C18orf25 ARKL1|RNF111L1 chromosome 18 open reading frame 25 protein-coding 13-PTNLD9-TUMOR_peak_50352 chr8 23411774 23412266 + 25.18154 NA intron (NM_016612, intron 1 of 3) intron (NM_016612, intron 1 of 3) 25657 NM_016612 51312 Hs.596025 NM_016612 SLC25A37 MFRN|MFRN1|MSC|MSCP|PRO1278|PRO1584|PRO2217 solute carrier family 25 (mitochondrial iron transporter), member 37 protein-coding 13-PTNLD9-TUMOR_peak_53866 chr9 89356252 89356557 + 25.18154 NA Intergenic Intergenic 205700 NM_002048 2619 Hs.65029 NM_002048 HPRD:00747 GAS1 - growth arrest-specific 1 protein-coding 13-PTNLD9-TUMOR_peak_4006 chr1 157986514 157986730 + 25.17652 NA intron (NM_001286349, intron 1 of 12) intron (NM_001286349, intron 1 of 12) 23559 NM_018240 55243 Hs.272234 NM_018240 HPRD:06306 KIRREL NEPH1 kin of IRRE like (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_17370 chr15 59642386 59642636 + 25.15457 NA intron (NM_004998, intron 1 of 27) intron (NM_004998, intron 1 of 27) 22560 NM_004998 4643 Hs.654506 NM_004998 HPRD:03281 MYO1E FSGS6|HuncM-IC|MYO1C myosin IE protein-coding 13-PTNLD9-TUMOR_peak_24293 chr19 16830221 16830743 + 25.12956 NA promoter-TSS (NM_001007525) promoter-TSS (NM_001007525) -305 NM_001007525 284434 Hs.406014 NM_001007525 HPRD:17337 NWD1 - NACHT and WD repeat domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_49610 chr7 149980829 149980988 + 25.12956 NA intron (NM_001164458, intron 6 of 7) intron (NM_001164458, intron 6 of 7) 19161 NM_001164459 653857 Hs.664579 NM_001164458 ENSG00000106526 ACTR3C ARP11 ARP3 actin-related protein 3 homolog C (yeast) protein-coding 13-PTNLD9-TUMOR_peak_11936 chr12 6162668 6163140 + 25.12580 NA intron (NM_000552, intron 15 of 51) MIR|SINE|MIR 70932 NM_000552 7450 Hs.440848 NM_000552 HPRD:01906 VWF F8VWF|VWD von Willebrand factor protein-coding 13-PTNLD9-TUMOR_peak_2985 chr1 116658140 116658477 + 25.12299 NA intron (NM_152367, intron 2 of 6) intron (NM_152367, intron 2 of 6) 3932 NM_152367 126868 Hs.376194 NM_152367 HPRD:08245 MAB21L3 C1orf161 mab-21-like 3 (C. elegans) protein-coding 13-PTNLD9-TUMOR_peak_41278 chr5 73611869 73612449 + 25.11942 NA Intergenic Intergenic -6152 NR_105010 101929082 Hs.434316 NR_105010 ENSG00000249343 LINC01333 - long intergenic non-protein coding RNA 1333 ncRNA 13-PTNLD9-TUMOR_peak_56736 chrX 153874898 153875275 + 25.11942 NA Intergenic MER67B|LTR|ERV1 6767 NM_172377 30848 Hs.87225 NM_020994 HPRD:02318 CTAG2 CAMEL|CT2|CT6.2|CT6.2a|CT6.2b|ESO2|LAGE-1|LAGE2B cancer/testis antigen 2 protein-coding 13-PTNLD9-TUMOR_peak_3073 chr1 120148333 120148639 + 25.11713 NA Intergenic LTR1|LTR|ERV1 -6572 NR_036540 644242 Hs.515383 NR_036540 ENSG00000260941 LINC00622 - long intergenic non-protein coding RNA 622 ncRNA 13-PTNLD9-TUMOR_peak_39472 chr4 141711850 141712270 + 25.11713 NA Intergenic Intergenic -34589 NM_015130 23158 Hs.480819 NM_015130 HPRD:11115 TBC1D9 MDR1 TBC1 domain family, member 9 (with GRAM domain) protein-coding 13-PTNLD9-TUMOR_peak_22728 chr18 19793296 19793685 + 25.11144 NA Intergenic Intergenic 44092 NM_005257 2627 Hs.514746 NM_005257 HPRD:09043 GATA6 - GATA binding protein 6 protein-coding 13-PTNLD9-TUMOR_peak_54559 chr9 117883394 117883791 + 25.11144 NA intron (NR_110950, intron 5 of 5) intron (NR_110950, intron 5 of 5) -3056 NM_002160 3371 Hs.143250 NM_002160 HPRD:01756 TNC 150-225|DFNA56|GMEM|GP|HXB|JI|TN|TN-C tenascin C protein-coding 13-PTNLD9-TUMOR_peak_35040 chr3 77874349 77874871 + 25.10904 NA Intergenic L1PA16|LINE|L1 727447 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout, axon guidance receptor, homolog 2 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_40967 chr5 57555581 57555997 + 25.10904 NA Intergenic Intergenic -137621 NR_104669 101928569 Hs.319708 NR_104669 ENSG00000248132 LOC101928569 - uncharacterized LOC101928569 ncRNA 13-PTNLD9-TUMOR_peak_5947 chr1 235153956 235154159 + 25.10904 NA Intergenic MLT1G|LTR|ERVL-MaLR 137195 NR_002956 677802 Hs.744743 NR_002956 SNORA14B ACA14b small nucleolar RNA, H/ACA box 14B snoRNA 13-PTNLD9-TUMOR_peak_3491 chr1 149513641 149513983 + 25.09813 NA TTS (NR_104086).2 TTS (NR_104086).2 444 NR_104086 101954277 NR_104086 RNVU1-19 RNU1-126|RNU1-147|RNVU1-13|vU1.13|vU1.19 RNA, variant U1 small nuclear 19 snRNA 13-PTNLD9-TUMOR_peak_44071 chr6 21022663 21023284 + 25.09298 NA intron (NM_017774, intron 11 of 15) intron (NM_017774, intron 11 of 15) 488285 NM_017774 54901 Hs.657604 NM_017774 HPRD:13022 CDKAL1 - CDK5 regulatory subunit associated protein 1-like 1 protein-coding 13-PTNLD9-TUMOR_peak_16977 chr15 33360935 33361216 + 25.09298 NA promoter-TSS (NM_001103184) promoter-TSS (NM_001103184) -842 NM_001103184 342184 Hs.657649 NM_198500 HPRD:07031 FMN1 FMN|LD formin 1 protein-coding 13-PTNLD9-TUMOR_peak_49164 chr7 132738025 132738349 + 25.09298 NA intron (NM_017812, intron 2 of 7) intron (NM_017812, intron 2 of 7) 28641 NM_017812 54927 Hs.655010 NM_017812 HPRD:13044 CHCHD3 MINOS3|PPP1R22 coiled-coil-helix-coiled-coil-helix domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_19610 chr16 67891596 67892063 + 25.09298 NA intron (NM_005796, intron 1 of 4) intron (NM_005796, intron 1 of 4) -10468 NM_025082 80152 Hs.288382 NM_025082 ENSG00000102901 CENPT C16orf56|CENP-T centromere protein T protein-coding 13-PTNLD9-TUMOR_peak_27376 chr2 83220771 83221102 + 25.08343 NA Intergenic Intergenic 137009 NR_033423 1720 Hs.169235 NR_033423 ENSG00000168129 LOC1720 - dihydrofolate reductase pseudogene pseudo 13-PTNLD9-TUMOR_peak_36609 chr3 161032760 161033069 + 25.06310 NA Intergenic MLT1H1|LTR|ERVL-MaLR 56957 NM_001040100 165679 Hs.369104 NM_145035 SPTSSB ADMP|C3orf57|SSSPTB serine palmitoyltransferase, small subunit B protein-coding 13-PTNLD9-TUMOR_peak_15892 chr14 58637918 58638100 + 25.06281 NA Intergenic Intergenic -19162 NM_001001872 145407 Hs.535420 NM_001001872 C14orf37 c14_5376 chromosome 14 open reading frame 37 protein-coding 13-PTNLD9-TUMOR_peak_39693 chr4 154515451 154515720 + 25.06281 NA intron (NM_015196, intron 19 of 34) intron (NM_015196, intron 19 of 34) -89856 NM_003264 7097 Hs.519033 NM_003264 TLR2 CD282|TIL4 toll-like receptor 2 protein-coding 13-PTNLD9-TUMOR_peak_2343 chr1 86072854 86073281 + 25.06147 NA Intergenic Intergenic 26623 NM_001554 3491 Hs.8867 NM_001554 HPRD:09089 CYR61 CCN1|GIG1|IGFBP10 cysteine-rich, angiogenic inducer, 61 protein-coding 13-PTNLD9-TUMOR_peak_32807 chr22 20923330 20923546 + 25.06147 NA intron (NM_001293234, intron 8 of 16) intron (NM_001293234, intron 8 of 16) 61103 NM_001293237 51586 Hs.517421 NM_015889 HPRD:12117 MED15 ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7 mediator complex subunit 15 protein-coding 13-PTNLD9-TUMOR_peak_36144 chr3 139625248 139625539 + 25.04796 NA Intergenic L2b|LINE|L2 -28634 NM_022131 64084 Hs.158529 NM_022131 CLSTN2 ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma calsyntenin 2 protein-coding 13-PTNLD9-TUMOR_peak_19267 chr16 48157128 48157337 + 25.03892 NA intron (NM_033226, intron 10 of 28) MIR3|SINE|MIR 23449 NM_033226 94160 Hs.410111 NM_033226 HPRD:06128 ABCC12 MRP9 ATP-binding cassette, sub-family C (CFTR/MRP), member 12 protein-coding 13-PTNLD9-TUMOR_peak_31046 chr20 39118658 39118860 + 25.03892 NA Intergenic ERVL-int|LTR|ERVL 199121 NM_005461 9935 Hs.169487 NM_005461 HPRD:07129 MAFB KRML|MCTO v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog B protein-coding 13-PTNLD9-TUMOR_peak_26045 chr2 9427880 9428105 + 25.03892 NA intron (NM_003887, intron 2 of 27) intron (NM_003887, intron 2 of 27) 81098 NM_003887 8853 Hs.555902 NM_003887 HPRD:04820 ASAP2 AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 protein-coding 13-PTNLD9-TUMOR_peak_16164 chr14 70049025 70049223 + 25.03600 NA Intergenic Intergenic -7524 NM_001271507 56936 Hs.458319 NM_020181 CCDC177 C14orf162|PLPL coiled-coil domain containing 177 protein-coding 13-PTNLD9-TUMOR_peak_15414 chr14 25580291 25580827 + 25.03600 NA Intergenic Intergenic -61464 NM_014178 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 amisyn syntaxin binding protein 6 (amisyn) protein-coding 13-PTNLD9-TUMOR_peak_3581 chr1 150895068 150895340 + 25.03506 NA Intergenic MLT1I|LTR|ERVL-MaLR -3611 NM_012432 9869 Hs.643565 NM_012432 HPRD:06828 SETDB1 ESET|H3-K9-HMTase4|KG1T|KMT1E|TDRD21 SET domain, bifurcated 1 protein-coding 13-PTNLD9-TUMOR_peak_52635 chr9 2809706 2810091 + 25.02349 NA intron (NM_014878, intron 16 of 17) intron (NM_014878, intron 16 of 17) 34232 NM_014878 9933 Hs.493309 NM_014878 HPRD:08822 KIAA0020 HA-8|HLA-HA8|PEN|PUF6|XTP5|hPUF-A KIAA0020 protein-coding 13-PTNLD9-TUMOR_peak_2220 chr1 76780513 76780681 + 25.02349 NA intron (NM_152996, intron 2 of 4) intron (NM_152996, intron 2 of 4) 240208 NM_001160011 256435 Hs.337040 NM_152996 ST6GALNAC3 PRO7177|SIAT7C|ST6GALNACIII|STY ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding 13-PTNLD9-TUMOR_peak_7801 chr10 77719067 77719267 + 25.02349 NA intron (NM_032024, intron 1 of 5) intron (NM_032024, intron 1 of 5) 176648 NM_032024 83938 Hs.118161 NM_032024 HPRD:12560 C10orf11 OCA5|OCA7 chromosome 10 open reading frame 11 protein-coding 13-PTNLD9-TUMOR_peak_19329 chr16 51611516 51611834 + 25.02349 NA Intergenic Intergenic -184755 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LOC101927364 - uncharacterized LOC101927364 ncRNA 13-PTNLD9-TUMOR_peak_43923 chr6 15793634 15793803 + 25.02349 NA Intergenic Intergenic -130429 NM_001271669 84062 Hs.571148 NM_032122 HPRD:06190 DTNBP1 BLOC1S8|DBND|HPS7|My031|SDY dystrobrevin binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_37215 chr3 190209478 190209678 + 25.02349 NA Intergenic MIR3|SINE|MIR -22262 NM_001167928 3556 Hs.478673 NM_002182 HPRD:04021 IL1RAP C3orf13|IL-1RAcP|IL1R3 interleukin 1 receptor accessory protein protein-coding 13-PTNLD9-TUMOR_peak_26672 chr2 40662065 40662396 + 25.00668 NA intron (NM_001112802, intron 1 of 7) intron (NM_001112802, intron 1 of 7) -4786 NM_001252624 6546 Hs.31961 NM_021097 HPRD:01659 SLC8A1 NCX1 solute carrier family 8 (sodium/calcium exchanger), member 1 protein-coding 13-PTNLD9-TUMOR_peak_19860 chr16 80971939 80972171 + 25.00668 NA Intergenic MLT1I|LTR|ERVL-MaLR -68048 NM_001270474 55839 Hs.726537 NM_018455 HPRD:12528 CENPN BM039|C16orf60|CENP-N|ICEN32 centromere protein N protein-coding 13-PTNLD9-TUMOR_peak_10264 chr11 65683235 65683462 + 24.99860 NA TTS (NM_001135635) TTS (NM_001135635) 3183 NM_031450 83638 Hs.433573 NM_031450 HPRD:12553 C11orf68 BLES03|P5326 chromosome 11 open reading frame 68 protein-coding 13-PTNLD9-TUMOR_peak_51971 chr8 128306872 128307513 + 24.99265 NA intron (NR_117100, intron 5 of 5) intron (NR_117100, intron 5 of 5) 50310 NR_117099 103021164 Hs.571531 NR_117099 CASC21 CARLo-2|LINC01244 cancer susceptibility candidate 21 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_42587 chr5 148998414 148998882 + 24.98515 NA intron (NM_001001669, intron 7 of 12) intron (NM_001001669, intron 7 of 12) 37513 NM_001001669 389337 Hs.256206 NM_001001669 HPRD:13454 ARHGEF37 - Rho guanine nucleotide exchange factor (GEF) 37 protein-coding 13-PTNLD9-TUMOR_peak_31704 chr20 57198877 57199279 + 24.98515 NA Intergenic Intergenic -10750 NR_125359 79160 Hs.280135 NR_125359 LOC79160 - uncharacterized LOC79160 ncRNA 13-PTNLD9-TUMOR_peak_13535 chr12 96613585 96613897 + 24.98249 NA intron (NM_005230, intron 1 of 4) intron (NM_005230, intron 1 of 4) 25534 NM_005230 2004 Hs.46523 NM_005230 ELK3 ERP|NET|SAP2 ELK3, ETS-domain protein (SRF accessory protein 2) protein-coding 13-PTNLD9-TUMOR_peak_47865 chr7 72923850 72924085 + 24.98249 NA intron (NM_032408, intron 2 of 19) AluJo|SINE|Alu 12648 NM_032408 9031 Hs.743372 NM_023005 HPRD:10416 BAZ1B WBSCR10|WBSCR9|WSTF bromodomain adjacent to zinc finger domain, 1B protein-coding 13-PTNLD9-TUMOR_peak_17338 chr15 57778126 57778364 + 24.97629 NA intron (NM_032866, intron 8 of 18) intron (NM_032866, intron 8 of 18) -105857 NR_104368 145781 Hs.437256 NM_001018090 GCOM1 GRINL1A|Gcom2|MYZAP|MYZAP-POLR2M|gcom GRINL1A complex locus 1 protein-coding 13-PTNLD9-TUMOR_peak_37651 chr4 3287929 3288113 + 24.97593 NA Intergenic Intergenic -27853 NM_198229 6002 Hs.527061 NM_002926 HPRD:03943 RGS12 - regulator of G-protein signaling 12 protein-coding 13-PTNLD9-TUMOR_peak_16032 chr14 65186956 65187218 + 24.97491 NA intron (NM_015549, intron 1 of 14) intron (NM_015549, intron 1 of 14) 15894 NM_015549 26030 Hs.509637 NM_015549 HPRD:17861 PLEKHG3 ARHGEF43|KIAA0599 pleckstrin homology domain containing, family G (with RhoGef domain) member 3 protein-coding 13-PTNLD9-TUMOR_peak_11432 chr11 120678194 120678491 + 24.97283 NA intron (NM_001282470, intron 3 of 19) intron (NM_001282470, intron 3 of 19) -216461 NM_001130047 219899 Hs.504136 NM_152715 TBCEL El|LRRC35 tubulin folding cofactor E-like protein-coding 13-PTNLD9-TUMOR_peak_51591 chr8 109893034 109893268 + 24.96542 NA Intergenic MLT1A|LTR|ERVL-MaLR -93381 NM_153015 157753 Hs.99439 NM_153015 TMEM74 NET36 transmembrane protein 74 protein-coding 13-PTNLD9-TUMOR_peak_22517 chr18 7464665 7464920 + 24.96542 NA Intergenic L2a|LINE|L2 -102522 NM_002845 5797 Hs.49774 NM_002845 HPRD:01479 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase, receptor type, M protein-coding 13-PTNLD9-TUMOR_peak_37936 chr4 9133166 9133381 + 24.96542 NA Intergenic Intergenic -79110 NM_001256852 100287144 Hs.741130 NM_001256852 ENSG00000231396 USP17L10 - ubiquitin specific peptidase 17-like family member 10 protein-coding 13-PTNLD9-TUMOR_peak_13912 chr12 113642681 113642901 + 24.96542 NA intron (NM_138451, intron 2 of 2) L2c|LINE|L2 16108 NM_138451 115811 Hs.568276 NM_138451 HPRD:13744 IQCD 4933433C09Rik|CFAP84|DRC10 IQ motif containing D protein-coding 13-PTNLD9-TUMOR_peak_36319 chr3 148892748 148892964 + 24.96542 NA intron (NM_000096, intron 18 of 18) intron (NM_000096, intron 18 of 18) 45485 NM_032383 84343 Hs.558314 NM_032383 HPRD:05835 HPS3 SUTAL Hermansky-Pudlak syndrome 3 protein-coding 13-PTNLD9-TUMOR_peak_51801 chr8 123734002 123734239 + 24.95659 NA Intergenic Intergenic -59781 NM_014943 22882 Hs.377090 NM_014943 HPRD:16458 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 13-PTNLD9-TUMOR_peak_41437 chr5 81653132 81653476 + 24.95659 NA Intergenic Intergenic 78023 NM_001017971 92270 Hs.729805 NM_001017971 HPRD:18710 ATP6AP1L - ATPase, H+ transporting, lysosomal accessory protein 1-like protein-coding 13-PTNLD9-TUMOR_peak_46812 chr7 6059454 6059713 + 24.95659 NA intron (NM_006303, intron 3 of 3) AluSc|SINE|Alu 10701 NM_006303 7965 Hs.301613 NM_006303 HPRD:02915 AIMP2 JTV-1|JTV1|P38 aminoacyl tRNA synthetase complex-interacting multifunctional protein 2 protein-coding 13-PTNLD9-TUMOR_peak_52293 chr8 140936947 140937542 + 24.95285 NA intron (NM_031466, intron 19 of 22) L1MEf|LINE|L1 -221945 NM_001282534 51305 Hs.493037 NM_001282534 HPRD:16167 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium channel, subfamily K, member 9 protein-coding 13-PTNLD9-TUMOR_peak_3908 chr1 156066507 156066680 + 24.95285 NA intron (NM_001282625, intron 3 of 12) intron (NM_001282625, intron 3 of 12) 14256 NM_001282625 4000 Hs.594444 NM_005572 HPRD:01035 LMNA CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|PRO1 lamin A/C protein-coding 13-PTNLD9-TUMOR_peak_11893 chr12 5107083 5107348 + 24.92905 NA Intergenic Intergenic -45870 NM_002234 3741 Hs.150208 NM_002234 HPRD:08888 KCNA5 ATFB7|HCK1|HK2|HPCN1|KV1.5|PCN1 potassium voltage-gated channel, shaker-related subfamily, member 5 protein-coding 13-PTNLD9-TUMOR_peak_53677 chr9 78579386 78579700 + 24.91619 NA intron (NR_120409, intron 2 of 19) intron (NR_120409, intron 2 of 19) 73983 NM_001190482 5125 Hs.368542 NM_006200 HPRD:08985 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 13-PTNLD9-TUMOR_peak_26420 chr2 28021843 28022454 + 24.89707 NA intron (NM_001287580, intron 8 of 8) intron (NM_001287580, intron 8 of 8) 27564 NM_145330 9553 Hs.515879 NM_004891 HPRD:14753 MRPL33 C2orf1|L33mt|MRP-L33|RPL33L mitochondrial ribosomal protein L33 protein-coding 13-PTNLD9-TUMOR_peak_22630 chr18 12287982 12288371 + 24.89707 NA Intergenic Intergenic -20081 NM_032525 84617 Hs.193491 NM_032525 HPRD:11349 TUBB6 HsT1601|TUBB-5 tubulin, beta 6 class V protein-coding 13-PTNLD9-TUMOR_peak_43086 chr5 173256856 173257051 + 24.89707 NA Intergenic Intergenic -39008 NR_108028 101928154 Hs.366725 NR_108028 LINC01485 - long intergenic non-protein coding RNA 1485 ncRNA 13-PTNLD9-TUMOR_peak_49669 chr7 151189023 151189287 + 24.89366 NA intron (NM_005614, intron 1 of 7) intron (NM_005614, intron 1 of 7) 27855 NM_005614 6009 Hs.283521 NM_005614 HPRD:03188 RHEB RHEB2 Ras homolog enriched in brain protein-coding 13-PTNLD9-TUMOR_peak_38788 chr4 85603176 85603425 + 24.89366 NA intron (NM_014991, intron 64 of 67) intron (NM_014991, intron 64 of 67) 99243 NM_001263 1040 Hs.654899 NM_001263 HPRD:11944 CDS1 CDS CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 1 protein-coding 13-PTNLD9-TUMOR_peak_361 chr1 10189462 10189683 + 24.88268 NA intron (NM_006048, intron 11 of 26) intron (NM_006048, intron 11 of 26) -81192 NM_183416 23095 Hs.97858 NM_015074 HPRD:05818 KIF1B CMT2|CMT2A|CMT2A1|HMSNII|KLP|NBLST1 kinesin family member 1B protein-coding 13-PTNLD9-TUMOR_peak_12074 chr12 8350465 8350803 + 24.87337 NA intron (NR_026788, intron 7 of 7) L1PBa|LINE|L1 17829 NR_026788 440078 Hs.512257 NR_026788 ENSG00000226711 FAM66C - family with sequence similarity 66, member C ncRNA 13-PTNLD9-TUMOR_peak_42984 chr5 170922353 170922756 + 24.86725 NA Intergenic Intergenic 75887 NM_003862 8817 Hs.87191 NM_003862 HPRD:04766 FGF18 FGF-18|ZFGF5 fibroblast growth factor 18 protein-coding 13-PTNLD9-TUMOR_peak_4640 chr1 181224727 181224953 + 24.86725 NA Intergenic LTR33|LTR|ERVL 19316 NR_046249 100287948 Hs.742594 NR_046249 ENSG00000179452 GM140 - uncharacterized LOC100287948 ncRNA 13-PTNLD9-TUMOR_peak_5238 chr1 206116634 206116929 + 24.86080 NA Intergenic Intergenic -21659 NM_001287385 554282 NM_001287385 FAM72C - family with sequence similarity 72, member C protein-coding 13-PTNLD9-TUMOR_peak_11036 chr11 100701137 100701301 + 24.85764 NA intron (NM_152432, intron 3 of 23) MER5A1|DNA|hAT-Charlie 142812 NM_152432 143872 Hs.741465 NM_152432 ENSG00000165895 ARHGAP42 GRAF3 Rho GTPase activating protein 42 protein-coding 13-PTNLD9-TUMOR_peak_5253 chr1 206299384 206299763 + 24.85320 NA Intergenic Intergenic -10926 NM_001007544 440712 Hs.662248 NM_001007544 C1orf186 - chromosome 1 open reading frame 186 protein-coding 13-PTNLD9-TUMOR_peak_39958 chr4 184359952 184360274 + 24.84994 NA Intergenic MLT1K|LTR|ERVL-MaLR -5676 NM_017632 55602 Hs.644077 NM_017632 HPRD:16683 CDKN2AIP CARF CDKN2A interacting protein protein-coding 13-PTNLD9-TUMOR_peak_29677 chr2 208259560 208260015 + 24.84994 NA Intergenic LTR44|LTR|ERV1 -134829 NM_134442 1385 Hs.516646 NM_004379 HPRD:00442 CREB1 CREB cAMP responsive element binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_6406 chr10 6779145 6779362 + 24.84994 NA Intergenic Intergenic 41889 NR_108074 100652997 Hs.255086 NR_108074 LINC00706 - long intergenic non-protein coding RNA 706 ncRNA 13-PTNLD9-TUMOR_peak_48449 chr7 98970016 98970435 + 24.83139 NA Intergenic Intergenic -2073 NM_005720 10095 Hs.489284 NM_005720 HPRD:10366 ARPC1B ARC41|p40-ARC|p41-ARC actin related protein 2/3 complex, subunit 1B, 41kDa protein-coding 13-PTNLD9-TUMOR_peak_7196 chr10 45476758 45476939 + 24.82704 NA intron (NM_032023, intron 3 of 10) L1MB1|LINE|L1 -2518 NM_007021 11067 Hs.93675 NM_007021 HPRD:12558 C10orf10 DEPP|FIG|Fseg chromosome 10 open reading frame 10 protein-coding 13-PTNLD9-TUMOR_peak_37960 chr4 9772804 9773084 + 24.82240 NA Intergenic Intergenic -10314 NM_000798 1816 Hs.380681 NM_000798 HPRD:00542 DRD5 DBDR|DRD1B|DRD1L2 dopamine receptor D5 protein-coding 13-PTNLD9-TUMOR_peak_44171 chr6 25175474 25175774 + 24.81504 NA Intergenic MER21A|LTR|ERVL -37004 NR_027626 8418 Hs.484918 NR_002174 CMAHP CMAH|CSAH cytidine monophospho-N-acetylneuraminic acid hydroxylase, pseudogene pseudo 13-PTNLD9-TUMOR_peak_20073 chr16 88454751 88455077 + 24.79840 NA Intergenic Intergenic -38965 NM_001127464 84627 Hs.54925 NM_001127464 ENSG00000225614 ZNF469 BCS|BCS1 zinc finger protein 469 protein-coding 13-PTNLD9-TUMOR_peak_1917 chr1 57303195 57303567 + 24.79128 NA Intergenic Intergenic -17062 NM_000562 731 Hs.93210 NM_000562 HPRD:00409 C8A - complement component 8, alpha polypeptide protein-coding 13-PTNLD9-TUMOR_peak_13243 chr12 68221737 68222123 + 24.79128 NA Intergenic Intergenic -98675 NR_110063 101927901 Hs.369609 NR_110063 ENSG00000255970 LOC101927901 - uncharacterized LOC101927901 ncRNA 13-PTNLD9-TUMOR_peak_3786 chr1 154449401 154449578 + 24.78705 NA Intergenic Intergenic 25037 NM_001010846 126669 Hs.591481 NM_001010846 HPRD:17293 SHE - Src homology 2 domain containing E protein-coding 13-PTNLD9-TUMOR_peak_19320 chr16 50755849 50756138 + 24.78384 NA intron (NM_001293557, intron 6 of 10) L3|LINE|CR1 -19968 NM_001042355 1540 Hs.578973 NM_015247 HPRD:05427 CYLD BRSS|CDMT|CYLD1|CYLDI|EAC|MFT|MFT1|SBS|TEM|USPL2 cylindromatosis (turban tumor syndrome) protein-coding 13-PTNLD9-TUMOR_peak_27325 chr2 74967932 74968385 + 24.78384 NA Intergenic Intergenic 86803 NR_073398 10505 Hs.25887 NM_004263 SEMA4F M-SEMA|PRO2353|S4F|SEMAM|SEMAW|m-Sema-M sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4F protein-coding 13-PTNLD9-TUMOR_peak_56884 chrY 13631198 13631332 + 24.78384 NA Intergenic Intergenic 902124 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_31078 chr20 39860985 39861300 + 24.78384 NA intron (NM_015035, intron 2 of 3) intron (NM_015035, intron 2 of 3) 63479 NR_106931 102466912 NR_106931 MIR6871 hsa-mir-6871 microRNA 6871 ncRNA 13-PTNLD9-TUMOR_peak_55002 chr9 137335308 137335532 + 24.77755 NA Intergenic Intergenic 36992 NM_001291921 6256 Hs.590886 NM_002957 RXRA NR2B1 retinoid X receptor, alpha protein-coding 13-PTNLD9-TUMOR_peak_29100 chr2 173647753 173648190 + 24.77755 NA intron (NM_007023, intron 1 of 30) LTR84b|LTR|ERVL -38344 NM_001100397 11069 Hs.470646 NM_007023 HPRD:06929 RAPGEF4 2|CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor (GEF) 4 protein-coding 13-PTNLD9-TUMOR_peak_52835 chr9 18393278 18393591 + 24.75170 NA Intergenic MER81|DNA|hAT-Blackjack -80645 NM_052866 92949 Hs.741483 NM_052866 HPRD:16462 ADAMTSL1 ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN ADAMTS-like 1 protein-coding 13-PTNLD9-TUMOR_peak_50513 chr8 29827511 29827793 + 24.75170 NA Intergenic Intergenic -12788 NR_036104 100422876 NR_036104 miRBase:MI0014175 MIR3148 - microRNA 3148 ncRNA 13-PTNLD9-TUMOR_peak_31779 chr20 61283459 61284127 + 24.73214 NA intron (NM_016354, intron 1 of 11) intron (NM_016354, intron 1 of 11) 9996 NM_016354 28231 Hs.235782 NM_016354 HPRD:11582 SLCO4A1 OATP-E|OATP1|OATP4A1|OATPE|OATPRP1|POAT|SLC21A12 solute carrier organic anion transporter family, member 4A1 protein-coding 13-PTNLD9-TUMOR_peak_15824 chr14 55239982 55240390 + 24.71782 NA intron (NM_001161576, intron 7 of 10) intron (NM_001161576, intron 7 of 10) 18680 NM_001161577 23034 Hs.98259 NM_015589 HPRD:10209 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 13-PTNLD9-TUMOR_peak_33792 chr3 12216697 12217122 + 24.71782 NA intron (NM_133625, intron 11 of 13) intron (NM_133625, intron 11 of 13) -16058 NM_003256 7079 Hs.591665 NM_003256 HPRD:03557 TIMP4 - TIMP metallopeptidase inhibitor 4 protein-coding 13-PTNLD9-TUMOR_peak_45222 chr6 47009969 47010195 + 24.71782 NA promoter-TSS (NM_153840) promoter-TSS (NM_153840) 0 NM_025048 266977 Hs.733762 NM_025048 HPRD:08661 GPR110 KPG_012|PGR19|hGPCR36 G protein-coupled receptor 110 protein-coding 13-PTNLD9-TUMOR_peak_54990 chr9 136739229 136739726 + 24.71782 NA intron (NM_003371, intron 2 of 26) intron (NM_003371, intron 2 of 26) 117969 NM_003371 7410 Hs.369921 NM_003371 HPRD:02694 VAV2 VAV-2 vav 2 guanine nucleotide exchange factor protein-coding 13-PTNLD9-TUMOR_peak_54608 chr9 121724199 121724433 + 24.70985 NA Intergenic Intergenic 407423 NM_014618 1620 Hs.532316 NM_014618 HPRD:04181 BRINP1 DBC1|DBCCR1|FAM5A bone morphogenetic protein/retinoic acid inducible neural-specific 1 protein-coding 13-PTNLD9-TUMOR_peak_12915 chr12 54262385 54262699 + 24.70985 NA Intergenic Intergenic -70034 NM_017410 3229 Hs.118608 NM_017410 HPRD:00862 HOXC13 ECTD9|HOX3|HOX3G homeobox C13 protein-coding 13-PTNLD9-TUMOR_peak_54572 chr9 118135697 118135937 + 24.70531 NA intron (NM_017418, intron 4 of 7) intron (NM_017418, intron 4 of 7) 231720 NM_017418 50514 Hs.148841 NM_017418 HPRD:16068 DEC1 CTS9 deleted in esophageal cancer 1 protein-coding 13-PTNLD9-TUMOR_peak_40707 chr5 41527329 41527727 + 24.70531 NA Intergenic MER41B|LTR|ERV1 -16798 NM_001005473 345557 Hs.145404 NM_001005473 HPRD:17860 PLCXD3 - phosphatidylinositol-specific phospholipase C, X domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_6502 chr10 12762384 12762670 + 24.70138 NA intron (NM_020397, intron 3 of 9) intron (NM_020397, intron 3 of 9) -112606 NR_027322 283070 Hs.600547 NR_027322 LOC283070 - uncharacterized LOC283070 ncRNA 13-PTNLD9-TUMOR_peak_6327 chr10 3867480 3867789 + 24.70138 NA Intergenic Intergenic -40161 NM_001160124 1316 Hs.4055 NM_001300 HPRD:03632 KLF6 BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9 Kruppel-like factor 6 protein-coding 13-PTNLD9-TUMOR_peak_14583 chr13 34731228 34731469 + 24.70138 NA Intergenic Intergenic 339142 NM_181558 5983 Hs.115474 NM_002915 HPRD:02676 RFC3 RFC38 replication factor C (activator 1) 3, 38kDa protein-coding 13-PTNLD9-TUMOR_peak_38274 chr4 48018434 48018857 + 24.70138 NA promoter-TSS (NM_207330) promoter-TSS (NM_207330) -146 NM_207330 152519 Hs.134190 NM_207330 NIPAL1 NPAL1 NIPA-like domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_12215 chr12 13679328 13679752 + 24.70138 NA Intergenic (GAGTG)n|Simple_repeat|Simple_repeat -149861 NR_036555 283422 Hs.448717 NM_182558 HPRD:08166 C12orf36 - chromosome 12 open reading frame 36 ncRNA 13-PTNLD9-TUMOR_peak_50773 chr8 43108351 43108598 + 24.70138 NA Intergenic Intergenic -39111 NM_001002920 340441 Hs.531579 NM_001002920 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family, member A protein-coding 13-PTNLD9-TUMOR_peak_11797 chr12 1567161 1567486 + 24.68486 NA intron (NR_027949, intron 15 of 15) intron (NR_027949, intron 15 of 15) -42334 NR_028415 100292680 Hs.391695 NR_028415 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 13-PTNLD9-TUMOR_peak_6783 chr10 29280335 29280509 + 24.68486 NA Intergenic Intergenic 145085 NM_001278522 283080 NM_001278522 ENSG00000204365 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 13-PTNLD9-TUMOR_peak_52897 chr9 21685023 21685260 + 24.68301 NA Intergenic Intergenic -117494 NM_002451 4507 Hs.193268 NM_002451 HPRD:01134 MTAP BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus methylthioadenosine phosphorylase protein-coding 13-PTNLD9-TUMOR_peak_39049 chr4 109319548 109319799 + 24.68164 NA Intergenic Intergenic 221940 NR_026968 285456 Hs.683863 NM_182591 HPRD:08228 RPL34-AS1 - RPL34 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_16826 chr15 26076006 26076618 + 24.67804 NA intron (NM_024490, intron 1 of 20) intron (NM_024490, intron 1 of 20) 17660 NR_039865 100616474 NR_039865 MIR4715 - microRNA 4715 ncRNA 13-PTNLD9-TUMOR_peak_37028 chr3 185376197 185376978 + 24.67804 NA intron (NM_001007225, intron 9 of 14) intron (NM_001007225, intron 9 of 14) -54453 NR_027317 646600 Hs.647949 NR_027317 ENSG00000163915 C3orf65 - chromosome 3 open reading frame 65 ncRNA 13-PTNLD9-TUMOR_peak_37332 chr3 194314182 194314428 + 24.67614 NA intron (NM_138399, intron 9 of 10) intron (NM_138399, intron 9 of 10) 9308 NR_047573 100507297 Hs.586059 NR_047573 TMEM44-AS1 - TMEM44 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_11695 chr11 131293687 131293953 + 24.67614 NA intron (NM_001048209, intron 1 of 7) intron (NM_001048209, intron 1 of 7) 53449 NM_001048209 50863 Hs.504352 NM_016522 HPRD:06398 NTM HNT|IGLON2|NTRI neurotrimin protein-coding 13-PTNLD9-TUMOR_peak_52387 chr8 143718426 143718671 + 24.65249 NA Intergenic Intergenic -22715 NM_015193 23237 Hs.40888 NM_015193 ARC Arg3.1 activity-regulated cytoskeleton-associated protein protein-coding 13-PTNLD9-TUMOR_peak_4539 chr1 178499181 178499477 + 24.65249 NA Intergenic Intergenic -12602 NR_033186 400798 Hs.668085 NM_207467 HPRD:13417 C1orf220 - chromosome 1 open reading frame 220 ncRNA 13-PTNLD9-TUMOR_peak_2752 chr1 109782715 109783193 + 24.63265 NA Intergenic Intergenic -9687 NM_001408 1952 Hs.57652 NM_001408 HPRD:05040 CELSR2 CDHF10|EGFL2|Flamingo1|MEGF3 cadherin, EGF LAG seven-pass G-type receptor 2 protein-coding 13-PTNLD9-TUMOR_peak_9494 chr11 34236507 34236752 + 24.62800 NA intron (NM_145804, intron 1 of 16) intron (NM_145804, intron 1 of 16) 109518 NM_001144030 55226 Hs.577281 NM_024662 HPRD:10964 NAT10 ALP|NET43 N-acetyltransferase 10 (GCN5-related) protein-coding 13-PTNLD9-TUMOR_peak_51883 chr8 126044059 126044399 + 24.62800 NA intron (NM_014846, intron 27 of 28) intron (NM_014846, intron 27 of 28) 33509 NM_003129 6713 Hs.71465 NM_003129 HPRD:11802 SQLE - squalene epoxidase protein-coding 13-PTNLD9-TUMOR_peak_2735 chr1 109408236 109408426 + 24.62800 NA Intergenic L2c|LINE|L2 -7467 NR_049760 254268 Hs.729441 NM_152763 HPRD:11325 AKNAD1 C1orf62 AKNA domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_45737 chr6 91121132 91121491 + 24.62800 NA Intergenic Intergenic 98850 NR_039671 100616109 NR_039671 miRBase:MI0016812 MIR4464 - microRNA 4464 ncRNA 13-PTNLD9-TUMOR_peak_4115 chr1 160966087 160966297 + 24.62581 NA 3' UTR (NM_016946, exon 10 of 10) 3' UTR (NM_016946, exon 10 of 10) 24941 NM_016946 50848 Hs.517293 NM_016946 HPRD:12038 F11R CD321|JAM|JAM1|JAMA|JCAM|KAT|PAM-1 F11 receptor protein-coding 13-PTNLD9-TUMOR_peak_25050 chr19 42303460 42303849 + 24.62556 NA intron (NM_001815, intron 2 of 6) intron (NM_001815, intron 2 of 6) 3132 NM_001815 1084 Hs.11 NM_001815 HPRD:16450 CEACAM3 CD66D|CEA|CGM1|W264|W282 carcinoembryonic antigen-related cell adhesion molecule 3 protein-coding 13-PTNLD9-TUMOR_peak_49047 chr7 129648836 129649101 + 24.61691 NA Intergenic Intergenic 42323 NM_001282190 51530 Hs.194157 NM_016478 ENSG00000091732 ZC3HC1 NIPA zinc finger, C3HC-type containing 1 protein-coding 13-PTNLD9-TUMOR_peak_32308 chr21 39649427 39649669 + 24.61437 NA intron (NM_170737, intron 1 of 2) intron (NM_170737, intron 1 of 2) 5206 NM_170737 3772 Hs.411299 NM_002243 HPRD:03659 KCNJ15 IRKK|KIR1.3|KIR4.2 potassium inwardly-rectifying channel, subfamily J, member 15 protein-coding 13-PTNLD9-TUMOR_peak_33737 chr3 10446927 10447165 + 24.61437 NA intron (NM_001001331, intron 3 of 22) intron (NM_001001331, intron 3 of 22) -10800 NR_030614 100126334 NR_030614 MIR885 MIRN885|hsa-mir-885 microRNA 885 ncRNA 13-PTNLD9-TUMOR_peak_21309 chr17 45589536 45589774 + 24.61215 NA Intergenic Intergenic -18789 NM_006310 9520 Hs.443837 NM_006310 HPRD:07366 NPEPPS AAP-S|MP100|PSA aminopeptidase puromycin sensitive protein-coding 13-PTNLD9-TUMOR_peak_26117 chr2 10984242 10984502 + 24.61215 NA Intergenic L2a|LINE|L2 -6269 NM_001282705 10130 Hs.212102 NM_005742 HPRD:07504 PDIA6 ERP5|P5|TXNDC7 protein disulfide isomerase family A, member 6 protein-coding 13-PTNLD9-TUMOR_peak_34853 chr3 65131877 65132122 + 24.58933 NA Intergenic Intergenic 426316 NR_030317 693126 NR_030317 miRBase:MI0003598 MIR548A2 MIRN548A2 microRNA 548a-2 ncRNA 13-PTNLD9-TUMOR_peak_29064 chr2 172128572 172128820 + 24.58933 NA Intergenic Intergenic -40872 NM_001136554 9874 Hs.744917 NM_012290 ENSG00000198586 TLK1 PKU-beta tousled-like kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_40651 chr5 38464298 38464585 + 24.58702 NA 3' UTR (NM_182801, exon 6 of 6) 3' UTR (NM_182801, exon 6 of 6) 18863 NM_182801 133584 Hs.20103 NM_152403 HPRD:13433 EGFLAM AGRINL|AGRNL|PIKA EGF-like, fibronectin type III and laminin G domains protein-coding 13-PTNLD9-TUMOR_peak_51051 chr8 66548950 66549210 + 24.58281 NA Intergenic Intergenic -2628 NM_018120 55156 Hs.269542 NM_018120 HPRD:16506 ARMC1 Arcp armadillo repeat containing 1 protein-coding 13-PTNLD9-TUMOR_peak_24301 chr19 17218830 17219289 + 24.56907 NA intron (NM_001130065, intron 2 of 39) intron (NM_001130065, intron 2 of 39) 32468 NM_004145 4650 Hs.123198 NM_004145 HPRD:03677 MYO9B CELIAC4|MYR5 myosin IXB protein-coding 13-PTNLD9-TUMOR_peak_56728 chrX 153785661 153786030 + 24.56907 NA intron (NM_001099856, intron 3 of 9) MER67B|LTR|ERV1 9783 NM_003639 8517 Hs.43505 NM_003639 HPRD:02217 IKBKG AMCBX1|FIP-3|FIP3|Fip3p|IKK-gamma|IP|IP1|IP2|IPD2|NEMO|ZC2HC9 inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase gamma protein-coding 13-PTNLD9-TUMOR_peak_44429 chr6 30059441 30060174 + 24.56845 NA Intergenic Intergenic -16179 NM_025236 80352 Hs.121178 NM_025236 HPRD:09600 RNF39 HZF|HZFW|LIRF ring finger protein 39 protein-coding 13-PTNLD9-TUMOR_peak_50438 chr8 27493654 27493923 + 24.56845 NA intron (NM_016240, intron 1 of 5) intron (NM_016240, intron 1 of 5) 2211 NM_016240 51435 Hs.128856 NM_016240 HPRD:04104 SCARA3 APC7|CSR|CSR1|MSLR1|MSRL1 scavenger receptor class A, member 3 protein-coding 13-PTNLD9-TUMOR_peak_30380 chr20 8996251 8996722 + 24.56845 NA Intergenic Intergenic -53215 NM_001172646 5332 Hs.472101 NM_000933 HPRD:02885 PLCB4 ARCND2|PI-PLC phospholipase C, beta 4 protein-coding 13-PTNLD9-TUMOR_peak_41923 chr5 125720662 125720995 + 24.55155 NA intron (NM_001146319, intron 1 of 13) intron (NM_001146319, intron 1 of 13) 25040 NM_001146319 65983 Hs.363558 NM_023927 HPRD:11402 GRAMD3 NS3TP2 GRAM domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_54590 chr9 119311654 119311892 + 24.55155 NA intron (NR_033973, intron 8 of 11) intron (NR_033973, intron 8 of 11) 45211 NR_033973 100128505 Hs.675821 NR_033973 ENSG00000229105 ASTN2-AS1 - ASTN2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_50693 chr8 40930666 40930982 + 24.55155 NA Intergenic MER31-int|LTR|ERV1 -175481 NM_001135731 79698 Hs.591850 NM_024645 HPRD:07837 ZMAT4 - zinc finger, matrin-type 4 protein-coding 13-PTNLD9-TUMOR_peak_45066 chr6 43064433 43064711 + 24.55155 NA intron (NM_001270398, intron 1 of 19) intron (NM_001270398, intron 1 of 19) 20020 NM_001270398 5754 Hs.90572 NM_002821 HPRD:03534 PTK7 CCK-4|CCK4 protein tyrosine kinase 7 protein-coding 13-PTNLD9-TUMOR_peak_31143 chr20 43299632 43299799 + 24.54820 NA intron (NR_034104, intron 1 of 4) HERVH-int|LTR|ERV1 665 NR_034104 79015 Hs.671450 NM_024049 ENSG00000132832 LINC01260 - long intergenic non-protein coding RNA 1260 ncRNA 13-PTNLD9-TUMOR_peak_4090 chr1 160187324 160187505 + 24.54700 NA exon (NM_015726, exon 14 of 14) exon (NM_015726, exon 14 of 14) -8755 NR_123725 729867 Hs.674191 NR_123725 ENSG00000227741 LOC729867 - uncharacterized LOC729867 ncRNA 13-PTNLD9-TUMOR_peak_35298 chr3 109646128 109646329 + 24.54286 NA Intergenic Intergenic 517391 NR_109841 401082 Hs.477089 NM_001145553 LINC01205 - long intergenic non-protein coding RNA 1205 ncRNA 13-PTNLD9-TUMOR_peak_46993 chr7 20289616 20289857 + 24.54286 NA Intergenic Intergenic -32723 NM_182762 346389 Hs.598388 NM_182762 HPRD:12381 MACC1 7A5|SH3BP4L metastasis associated in colon cancer 1 protein-coding 13-PTNLD9-TUMOR_peak_50696 chr8 41054038 41054271 + 24.54286 NA Intergenic Intergenic 112836 NM_003012 6422 Hs.213424 NM_003012 HPRD:09165 SFRP1 FRP|FRP-1|FRP1|FrzA|SARP2 secreted frizzled-related protein 1 protein-coding 13-PTNLD9-TUMOR_peak_32543 chr21 46016303 46016542 + 24.54286 NA intron (NM_144991, intron 1 of 11) intron (NM_144991, intron 1 of 11) -4036 NM_198688 386674 Hs.689666 NM_198688 HPRD:11192 KRTAP10-6 KAP10.6|KAP18.6|KRTAP18-6|KRTAP18.6 keratin associated protein 10-6 protein-coding 13-PTNLD9-TUMOR_peak_24465 chr19 19716842 19717135 + 24.54286 NA intron (NR_038198, intron 1 of 7) MLT1E1A|LTR|ERVL-MaLR 12737 NM_025245 80714 Hs.466257 NM_025245 HPRD:16287 PBX4 - pre-B-cell leukemia homeobox 4 protein-coding 13-PTNLD9-TUMOR_peak_48437 chr7 98735193 98735385 + 24.53038 NA intron (NM_001199847, intron 1 of 17) intron (NM_001199847, intron 1 of 17) 6454 NM_020429 57154 Hs.189329 NM_020429 HPRD:06902 SMURF1 - SMAD specific E3 ubiquitin protein ligase 1 protein-coding 13-PTNLD9-TUMOR_peak_9586 chr11 39700599 39700833 + 24.53038 NA Intergenic Intergenic 613964 NR_047674 57689 Hs.745123 NM_020929 HPRD:12303 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 13-PTNLD9-TUMOR_peak_15822 chr14 55144094 55144342 + 24.53038 NA intron (NM_001161576, intron 1 of 10) intron (NM_001161576, intron 1 of 10) -77288 NM_001161577 23034 Hs.98259 NM_015589 HPRD:10209 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 13-PTNLD9-TUMOR_peak_2746 chr1 109739965 109740275 + 24.52251 NA exon (NM_020775, exon 16 of 22) exon (NM_020775, exon 16 of 22) 10949 NM_001284353 57535 Hs.708190 NM_020775 KIAA1324 EIG121 KIAA1324 protein-coding 13-PTNLD9-TUMOR_peak_41880 chr5 123036348 123036623 + 24.52251 NA Intergenic Intergenic 155374 NM_004384 1456 Hs.129206 NM_004384 HPRD:05034 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1, gamma 3 protein-coding 13-PTNLD9-TUMOR_peak_6818 chr10 30235859 30236358 + 24.52251 NA Intergenic Intergenic 112380 NM_020848 57608 Hs.533953 NM_020848 ENSG00000165757 KIAA1462 JCAD KIAA1462 protein-coding 13-PTNLD9-TUMOR_peak_22184 chr17 76879378 76879681 + 24.51124 NA intron (NM_003255, intron 1 of 4) intron (NM_003255, intron 1 of 4) 19770 NM_001243540 100653515 Hs.734636 NM_001243540 ENSG00000178404 KIAA1731NL DDC8 KIAA1731 N-terminal like protein-coding 13-PTNLD9-TUMOR_peak_29447 chr2 197156911 197157328 + 24.50114 NA intron (NM_020760, intron 14 of 28) intron (NM_020760, intron 14 of 28) 32371 NR_110226 101927482 Hs.191841 NR_110225 ENSG00000229056 LOC101927482 - uncharacterized LOC101927482 ncRNA 13-PTNLD9-TUMOR_peak_27396 chr2 85147053 85147246 + 24.49290 NA Intergenic MER44B|DNA|TcMar-Tigger 14386 NM_021103 9168 Hs.446574 NM_021103 HPRD:01779 TMSB10 MIG12|TB10 thymosin beta 10 protein-coding 13-PTNLD9-TUMOR_peak_1729 chr1 49344226 49344590 + 24.49290 NA intron (NM_032785, intron 5 of 13) L2b|LINE|L2 -101861 NM_024603 79656 Hs.475348 NM_024603 BEND5 C1orf165 BEN domain containing 5 protein-coding 13-PTNLD9-TUMOR_peak_36945 chr3 183492456 183492733 + 24.47705 NA intron (NM_018023, intron 17 of 30) intron (NM_018023, intron 17 of 30) 50799 NM_024871 79929 Hs.478465 NM_024871 HPRD:07793 MAP6D1 MAPO6D1|SL21 MAP6 domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_2328 chr1 85779730 85779966 + 24.47705 NA Intergenic Intergenic -37261 NM_003921 8915 Hs.193516 NM_003921 HPRD:04625 BCL10 CARMEN|CIPER|CLAP|c-E10|mE10 B-cell CLL/lymphoma 10 protein-coding 13-PTNLD9-TUMOR_peak_22747 chr18 20131799 20132120 + 24.47705 NA Intergenic Intergenic -134081 NM_172241 64693 Hs.406709 NM_022663 HPRD:16395 CTAGE1 CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2 cutaneous T-cell lymphoma-associated antigen 1 protein-coding 13-PTNLD9-TUMOR_peak_40903 chr5 55438450 55438734 + 24.47705 NA intron (NM_024669, intron 7 of 11) intron (NM_024669, intron 7 of 11) 90594 NM_024669 79722 Hs.436214 NM_024669 HPRD:07758 ANKRD55 - ankyrin repeat domain 55 protein-coding 13-PTNLD9-TUMOR_peak_43751 chr6 10734937 10735243 + 24.46792 NA Intergenic AluSc8|SINE|Alu 11942 NM_001165258 51522 Hs.519557 NM_016462 HPRD:15524 TMEM14C C6orf53|MSTP073|NET26|bA421M1.6 transmembrane protein 14C protein-coding 13-PTNLD9-TUMOR_peak_1795 chr1 53321825 53322006 + 24.46792 NA intron (NM_001004339, intron 2 of 13) intron (NM_001004339, intron 2 of 13) 13732 NM_001004339 440590 Hs.658458 NM_001004339 HPRD:17399 ZYG11A ZYG11 zyg-11 family member A, cell cycle regulator protein-coding 13-PTNLD9-TUMOR_peak_10014 chr11 61497698 61498092 + 24.46138 NA intron (NM_006133, intron 8 of 19) intron (NM_006133, intron 8 of 19) -22226 NM_001127392 745 Hs.473109 NM_013279 HPRD:12213 MYRF C11orf9|MRF|Ndt80|pqn-47 myelin regulatory factor protein-coding 13-PTNLD9-TUMOR_peak_3885 chr1 155733144 155733625 + 24.46138 NA TTS (NM_001282861) TTS (NM_001282861) 17825 NR_024117 100129405 Hs.656361 NR_024117 MSTO2P MSTO2 misato family member 2, pseudogene pseudo 13-PTNLD9-TUMOR_peak_52928 chr9 22683187 22683425 + 24.45771 NA intron (NR_038977, intron 3 of 5) intron (NR_038977, intron 3 of 5) 37107 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 13-PTNLD9-TUMOR_peak_43088 chr5 173286404 173286989 + 24.45524 NA Intergenic L2a|LINE|L2 -28635 NM_030627 80315 Hs.127126 NM_030627 HPRD:16746 CPEB4 - cytoplasmic polyadenylation element binding protein 4 protein-coding 13-PTNLD9-TUMOR_peak_13318 chr12 71152965 71153548 + 24.45524 NA intron (NM_001207015, intron 3 of 12) intron (NM_001207015, intron 3 of 12) -4717 NM_001207016 5801 Hs.506076 NM_002849 HPRD:04169 PTPRR EC-PTP|PCPTP1|PTP-SL|PTPBR7|PTPRQ protein tyrosine phosphatase, receptor type, R protein-coding 13-PTNLD9-TUMOR_peak_52012 chr8 129140129 129140346 + 24.44415 NA Intergenic Intergenic -22125 NR_031613 100302281 NR_031613 miRBase:MI0006341 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 13-PTNLD9-TUMOR_peak_38050 chr4 17730866 17731013 + 24.44415 NA intron (NM_015688, intron 1 of 17) L1PA4|LINE|L1 52196 NM_015688 27146 Hs.744951 NM_015688 FAM184B - family with sequence similarity 184, member B protein-coding 13-PTNLD9-TUMOR_peak_45284 chr6 52382460 52382666 + 24.44415 NA intron (NM_012288, intron 2 of 10) intron (NM_012288, intron 2 of 10) 59299 NM_012288 9697 Hs.520182 NM_012288 HPRD:16338 TRAM2 - translocation associated membrane protein 2 protein-coding 13-PTNLD9-TUMOR_peak_41729 chr5 111084043 111084278 + 24.40491 NA intron (NM_001142474, intron 2 of 3) intron (NM_001142474, intron 2 of 3) 7788 NM_001142483 9315 Hs.36053 NM_004772 HPRD:09545 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 13-PTNLD9-TUMOR_peak_3382 chr1 147112668 147112879 + 24.40491 NA Intergenic Intergenic 29861 NM_016361 51205 Hs.562154 NM_016361 ACP6 ACPL1|LPAP|PACPL1 acid phosphatase 6, lysophosphatidic protein-coding 13-PTNLD9-TUMOR_peak_44183 chr6 25884290 25884554 + 24.40387 NA Intergenic Intergenic -9951 NM_006632 10786 Hs.327179 NM_006632 HPRD:10233 SLC17A3 NPT4 solute carrier family 17 (organic anion transporter), member 3 protein-coding 13-PTNLD9-TUMOR_peak_16198 chr14 71174014 71174288 + 24.40166 NA intron (NR_125769, intron 3 of 3) intron (NR_125769, intron 3 of 3) 8736 NR_125769 103695436 Hs.572296 NR_125769 LINC01269 - long intergenic non-protein coding RNA 1269 ncRNA 13-PTNLD9-TUMOR_peak_45566 chr6 80012144 80012326 + 24.40166 NA Intergenic Intergenic -67780 NM_004242 9324 Hs.77558 NM_004242 HPRD:16062 HMGN3 PNAS-25|TRIP7 high mobility group nucleosomal binding domain 3 protein-coding 13-PTNLD9-TUMOR_peak_51399 chr8 101455454 101455617 + 24.40166 NA Intergenic Intergenic 60544 NR_039681 100616451 NR_039681 miRBase:MI0016822 MIR4471 - microRNA 4471 ncRNA 13-PTNLD9-TUMOR_peak_41907 chr5 124613294 124613493 + 24.40166 NA intron (NR_109882, intron 4 of 5) intron (NR_109882, intron 4 of 5) -215561 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LOC101927460 - uncharacterized LOC101927460 ncRNA 13-PTNLD9-TUMOR_peak_24365 chr19 18049059 18049288 + 24.39835 NA intron (NM_001136203, intron 2 of 4) intron (NM_001136203, intron 2 of 4) 3268 NM_138442 115098 Hs.100043 NM_138442 HPRD:14008 CCDC124 - coiled-coil domain containing 124 protein-coding 13-PTNLD9-TUMOR_peak_24172 chr19 14257711 14257958 + 24.39446 NA TTS (NM_014921) TTS (NM_014921) 9870 NR_045214 100507373 Hs.720437 NR_045214 ENSG00000267169 LOC100507373 - uncharacterized LOC100507373 ncRNA 13-PTNLD9-TUMOR_peak_41735 chr5 111518902 111519337 + 24.38948 NA intron (NM_022140, intron 18 of 22) intron (NM_022140, intron 18 of 22) 21937 NR_002922 654322 Hs.689709 NR_002922 ENSG00000238363 SNORA13 ACA13 small nucleolar RNA, H/ACA box 13 snoRNA 13-PTNLD9-TUMOR_peak_28708 chr2 150990208 150990444 + 24.38948 NA Intergenic Intergenic 353883 NM_005168 390 Hs.6838 NM_005168 HPRD:04233 RND3 ARHE|Rho8|RhoE|memB Rho family GTPase 3 protein-coding 13-PTNLD9-TUMOR_peak_37971 chr4 10034313 10034550 + 24.37278 NA intron (NM_001001290, intron 1 of 12) intron (NM_001001290, intron 1 of 12) 7441 NM_001001290 56606 Hs.656895 NM_020041 HPRD:05848 SLC2A9 GLUT9|GLUTX|UAQTL2|URATv1 solute carrier family 2 (facilitated glucose transporter), member 9 protein-coding 13-PTNLD9-TUMOR_peak_49833 chr7 157092546 157093075 + 24.37168 NA Intergenic CpG -36900 NM_005494 10049 Hs.490745 NM_005494 HPRD:07107 DNAJB6 DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|MRJ|MSJ-1 DnaJ (Hsp40) homolog, subfamily B, member 6 protein-coding 13-PTNLD9-TUMOR_peak_15286 chr14 22627063 22627297 + 24.35806 NA Intergenic MLT2E|LTR|ERVL 430963 NM_001344 1603 Hs.82890 NM_001344 HPRD:02589 DAD1 OST2 defender against cell death 1 protein-coding 13-PTNLD9-TUMOR_peak_25485 chr19 51495215 51495487 + 24.34246 NA Intergenic Intergenic -8031 NM_001207053 5650 Hs.151254 NM_005046 HPRD:05115 KLK7 PRSS6|SCCE|hK7 kallikrein-related peptidase 7 protein-coding 13-PTNLD9-TUMOR_peak_36525 chr3 157217178 157217481 + 24.34246 NA 5' UTR (NM_001167915, exon 2 of 5) 5' UTR (NM_001167915, exon 2 of 5) 116 NM_024621 79674 Hs.658046 NM_024621 HPRD:07782 VEPH1 MELT|VEPH ventricular zone expressed PH domain-containing 1 protein-coding 13-PTNLD9-TUMOR_peak_44874 chr6 37521519 37521753 + 24.34188 NA Intergenic L1ME3A|LINE|L1 1562 NR_039669 100616413 NR_039669 miRBase:MI0016810 MIR4462 - microRNA 4462 ncRNA 13-PTNLD9-TUMOR_peak_13289 chr12 70082951 70083169 + 24.33684 NA promoter-TSS (NM_152439) promoter-TSS (NM_152439) -3 NR_104220 144453 Hs.280782 NM_032735 HPRD:17484 BEST3 VMD2L3 bestrophin 3 protein-coding 13-PTNLD9-TUMOR_peak_52155 chr8 134194761 134195050 + 24.33060 NA Intergenic MER5A|DNA|hAT-Charlie -8377 NM_003882 8840 Hs.492974 NM_003882 WISP1 CCN4|WISP1c|WISP1i|WISP1tc WNT1 inducible signaling pathway protein 1 protein-coding 13-PTNLD9-TUMOR_peak_46979 chr7 19997963 19998449 + 24.33060 NA intron (NR_110114, intron 5 of 5) MER20|DNA|hAT-Charlie 181843 NR_110114 101927668 Hs.715900 NR_110114 ENSG00000243004 LOC101927668 - uncharacterized LOC101927668 ncRNA 13-PTNLD9-TUMOR_peak_24459 chr19 19514218 19514659 + 24.32882 NA intron (NM_017660, intron 1 of 11) intron (NM_017660, intron 1 of 11) 17796 NM_017660 54815 Hs.118964 NM_017660 HPRD:11741 GATAD2A p66alpha GATA zinc finger domain containing 2A protein-coding 13-PTNLD9-TUMOR_peak_42754 chr5 154485902 154486171 + 24.30903 NA Intergenic Intergenic 92776 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 13-PTNLD9-TUMOR_peak_27250 chr2 72058375 72058650 + 24.30903 NA Intergenic Intergenic 316479 NM_001277742 56603 Hs.91546 NM_019885 HPRD:05550 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450, family 26, subfamily B, polypeptide 1 protein-coding 13-PTNLD9-TUMOR_peak_49725 chr7 152523049 152523228 + 24.30569 NA intron (NM_001040135, intron 9 of 9) intron (NM_001040135, intron 9 of 9) 66304 NR_073000 57180 Hs.647117 NM_020445 HPRD:12489 ACTR3B ARP11|ARP3BETA ARP3 actin-related protein 3 homolog B (yeast) protein-coding 13-PTNLD9-TUMOR_peak_7222 chr10 46904237 46904448 + 24.27316 NA non-coding (NR_027632, exon 2 of 7) non-coding (NR_027632, exon 2 of 7) 6701 NR_027632 414241 Hs.594331 NM_001098846 ENSG00000165874 FAM35BP FAM35B|FAM35EP|bA38L15.1 family with sequence similarity 35, member A pseudogene pseudo 13-PTNLD9-TUMOR_peak_37786 chr4 6690686 6690926 + 24.26912 NA Intergenic Intergenic -4760 NM_005980 6286 Hs.2962 NM_005980 S100P MIG9 S100 calcium binding protein P protein-coding 13-PTNLD9-TUMOR_peak_1488 chr1 44053334 44053565 + 24.25800 NA intron (NM_130440, intron 7 of 32) intron (NM_130440, intron 7 of 32) 56902 NM_130440 5792 Hs.272062 NM_002840 HPRD:01552 PTPRF LAR protein tyrosine phosphatase, receptor type, F protein-coding 13-PTNLD9-TUMOR_peak_38642 chr4 77659629 77660059 + 24.25800 NA intron (NM_020859, intron 4 of 10) intron (NM_020859, intron 4 of 10) 159158 NM_001029870 345079 Hs.257292 NM_001029870 HPRD:18789 SOWAHB ANKRD56 sosondowah ankyrin repeat domain family member B protein-coding 13-PTNLD9-TUMOR_peak_48913 chr7 126214392 126214698 + 24.25014 NA intron (NR_028041, intron 8 of 10) intron (NR_028041, intron 8 of 10) 483693 NR_030323 693177 NR_030323 MIR592 MIRN592|hsa-mir-592 microRNA 592 ncRNA 13-PTNLD9-TUMOR_peak_45722 chr6 90660804 90661164 + 24.25014 NA exon (NM_001170794, exon 5 of 7) exon (NM_001170794, exon 5 of 7) 56796 NM_032602 84694 Hs.334499 NM_032602 HPRD:13104 GJA10 CX62 gap junction protein, alpha 10, 62kDa protein-coding 13-PTNLD9-TUMOR_peak_49063 chr7 129932770 129933043 + 24.24855 NA promoter-TSS (NM_001163446) promoter-TSS (NM_001163446) -68 NM_001163446 51200 Hs.93764 NM_016352 HPRD:07405 CPA4 CPA3 carboxypeptidase A4 protein-coding 13-PTNLD9-TUMOR_peak_23376 chr18 60548884 60549263 + 24.23237 NA intron (NM_194449, intron 4 of 16) intron (NM_194449, intron 4 of 16) 166401 NM_194449 23239 Hs.465337 NM_194449 HPRD:15145 PHLPP1 PHLPP|PLEKHE1|SCOP PH domain and leucine rich repeat protein phosphatase 1 protein-coding 13-PTNLD9-TUMOR_peak_7876 chr10 81956062 81956650 + 24.23080 NA intron (NM_001278408, intron 1 of 16) intron (NM_001278408, intron 1 of 16) 7891 NM_001278408 311 Hs.530291 NM_001157 HPRD:03983 ANXA11 ANX11|CAP50 annexin A11 protein-coding 13-PTNLD9-TUMOR_peak_44981 chr6 41604642 41604840 + 24.21682 NA promoter-TSS (NM_001300804) promoter-TSS (NM_001300804) -174 NM_001300804 4188 Hs.520119 NM_005586 HPRD:07280 MDFI I-MF|I-mfa MyoD family inhibitor protein-coding 13-PTNLD9-TUMOR_peak_14287 chr12 127725649 127725949 + 24.21682 NA Intergenic Intergenic 98818 NR_110057 101927616 Hs.637827 NR_110057 ENSG00000256362 LOC101927616 - uncharacterized LOC101927616 ncRNA 13-PTNLD9-TUMOR_peak_51445 chr8 102300259 102300589 + 24.20429 NA Intergenic Intergenic -80697 NR_002182 83955 Hs.567608 NM_032031 ENSG00000228224 NACAP1 - nascent-polypeptide-associated complex alpha polypeptide pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_22776 chr18 21002913 21003291 + 24.20429 NA intron (NM_032933, intron 2 of 14) intron (NM_032933, intron 2 of 14) 14823 NM_032933 85019 Hs.137562 NM_032933 HPRD:12692 TMEM241 C18orf45|hVVT transmembrane protein 241 protein-coding 13-PTNLD9-TUMOR_peak_43941 chr6 16320252 16320448 + 24.20429 NA intron (NM_001128164, intron 7 of 7) intron (NM_001128164, intron 7 of 7) 81539 NM_006877 2766 Hs.484741 NM_006877 HPRD:00754 GMPR GMPR1 guanosine monophosphate reductase protein-coding 13-PTNLD9-TUMOR_peak_53340 chr9 44630983 44631192 + 24.20204 NA Intergenic Intergenic 246502 NR_121564 101927827 Hs.738704 NR_121564 ENSG00000229311 LOC101927827 - uncharacterized LOC101927827 ncRNA 13-PTNLD9-TUMOR_peak_25222 chr19 47582703 47582902 + 24.20204 NA intron (NM_015168, intron 11 of 14) intron (NM_015168, intron 11 of 14) -30920 NM_017854 54958 Hs.105606 NM_017854 HPRD:07920 TMEM160 - transmembrane protein 160 protein-coding 13-PTNLD9-TUMOR_peak_50195 chr8 19156026 19156495 + 24.20204 NA Intergenic Intergenic -14821 NM_022071 63898 Hs.303208 NM_022071 HPRD:08340 SH2D4A PPP1R38|SH2A SH2 domain containing 4A protein-coding 13-PTNLD9-TUMOR_peak_39685 chr4 154155083 154155546 + 24.20204 NA intron (NM_015271, intron 1 of 11) intron (NM_015271, intron 1 of 11) 29716 NM_015271 23321 Hs.435711 NM_015271 HPRD:10279 TRIM2 CMT2R|RNF86 tripartite motif containing 2 protein-coding 13-PTNLD9-TUMOR_peak_55193 chr9_gl000200_random 178980 179189 + 24.20204 NA NA Intergenic NA NA 13-PTNLD9-TUMOR_peak_24934 chr19 39603018 39603246 + 24.19794 NA Intergenic Intergenic -13288 NM_001014834 10298 Hs.20447 NM_005884 HPRD:05675 PAK4 - p21 protein (Cdc42/Rac)-activated kinase 4 protein-coding 13-PTNLD9-TUMOR_peak_15289 chr14 22802524 22802685 + 24.18952 NA Intergenic Intergenic 255539 NM_001344 1603 Hs.82890 NM_001344 HPRD:02589 DAD1 OST2 defender against cell death 1 protein-coding 13-PTNLD9-TUMOR_peak_15499 chr14 34148819 34149053 + 24.18663 NA intron (NM_001165893, intron 5 of 10) intron (NM_001165893, intron 5 of 10) 271348 NM_022073 112399 Hs.135507 NM_022073 HPRD:06972 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia-inducible factor 3 protein-coding 13-PTNLD9-TUMOR_peak_51566 chr8 107869981 107870342 + 24.18513 NA Intergenic Intergenic -87689 NM_139166 137735 Hs.374668 NM_139166 HPRD:11608 ABRA STARS actin-binding Rho activating protein protein-coding 13-PTNLD9-TUMOR_peak_7587 chr10 70977007 70977400 + 24.17517 NA intron (NR_120648, intron 4 of 4) intron (NR_120648, intron 4 of 4) -2856 NM_025130 80201 Hs.522988 NM_025130 HPRD:08006 HKDC1 - hexokinase domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_4194 chr1 162648297 162648581 + 24.13532 NA intron (NM_006182, intron 2 of 17) intron (NM_006182, intron 2 of 17) 46211 NM_001014796 4921 Hs.275757 NM_006182 HPRD:01868 DDR2 MIG20a|NTRKR3|TKT|TYRO10 discoidin domain receptor tyrosine kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_1606 chr1 46394976 46395326 + 24.11449 NA intron (NM_015112, intron 4 of 28) intron (NM_015112, intron 4 of 28) 125866 NM_015112 23139 Hs.319481 NM_015112 HPRD:11294 MAST2 MAST205|MTSSK microtubule associated serine/threonine kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_43450 chr6 2432581 2432841 + 24.10717 NA Intergenic Intergenic 186724 NR_046229 100508120 Hs.188825 NR_046229 GMDS-AS1 - GMDS antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_51516 chr8 104457847 104458042 + 24.10554 NA Intergenic AmnSINE1|SINE|Deu -30381 NM_030780 81034 Hs.532265 NM_030780 HPRD:11301 SLC25A32 MFT|MFTC solute carrier family 25 (mitochondrial folate carrier), member 32 protein-coding 13-PTNLD9-TUMOR_peak_35961 chr3 132999593 132999716 + 24.10554 NA intron (NM_001282865, intron 2 of 3) MLT1H|LTR|ERVL-MaLR -23689 NR_110812 101927455 Hs.570550 NR_110812 ENSG00000251011 TMEM108-AS1 - TMEM108 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_47466 chr7 49438429 49438603 + 24.10554 NA Intergenic Intergenic -374741 NM_198570 375567 Hs.629302 NM_198570 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_27936 chr2 107399120 107399469 + 24.10554 NA Intergenic Intergenic 103316 NM_001142351 84620 Hs.98265 NM_032528 HPRD:12237 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactosamide alpha-2,6-sialyltranferase 2 protein-coding 13-PTNLD9-TUMOR_peak_28575 chr2 136993687 136993995 + 24.07907 NA Intergenic Charlie13b|DNA|hAT-Charlie -118116 NM_003467 7852 Hs.593413 NM_003467 HPRD:01217 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM chemokine (C-X-C motif) receptor 4 protein-coding 13-PTNLD9-TUMOR_peak_14222 chr12 125105577 125106107 + 24.07749 NA Intergenic Intergenic -53832 NM_001206654 9612 Hs.137510 NM_006312 HPRD:02910 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 13-PTNLD9-TUMOR_peak_13188 chr12 66042916 66043224 + 24.07749 NA Intergenic Intergenic -6918 NR_120431 100507065 Hs.591038 NR_120431 ENSG00000250748 LOC100507065 - uncharacterized LOC100507065 ncRNA 13-PTNLD9-TUMOR_peak_36953 chr3 183749157 183749313 + 24.07749 NA promoter-TSS (NM_182537) promoter-TSS (NM_182537) -97 NM_182537 200909 Hs.448004 NM_182537 HPRD:17121 HTR3D 5HT3D 5-hydroxytryptamine (serotonin) receptor 3D, ionotropic protein-coding 13-PTNLD9-TUMOR_peak_49066 chr7 130003367 130003615 + 24.07238 NA intron (NM_001127441, intron 11 of 13) intron (NM_001127441, intron 11 of 13) -16799 NM_001868 1357 Hs.2879 NM_001868 HPRD:00269 CPA1 CPA carboxypeptidase A1 (pancreatic) protein-coding 13-PTNLD9-TUMOR_peak_15910 chr14 59565125 59565489 + 24.06851 NA Intergenic Intergenic -90074 NM_001270520 23002 Hs.19156 NM_014992 HPRD:09433 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 13-PTNLD9-TUMOR_peak_4627 chr1 181081631 181081988 + 24.05769 NA Intergenic Intergenic 24171 NM_016545 51278 Hs.15725 NM_016545 HPRD:06210 IER5 SBBI48 immediate early response 5 protein-coding 13-PTNLD9-TUMOR_peak_43310 chr5 179341063 179341382 + 24.04251 NA Intergenic Intergenic -6366 NM_198868 23061 Hs.155829 NM_015043 HPRD:10015 TBC1D9B - TBC1 domain family, member 9B (with GRAM domain) protein-coding 13-PTNLD9-TUMOR_peak_33917 chr3 15106605 15106917 + 24.04251 NA promoter-TSS (NM_022497) promoter-TSS (NM_022497) 55 NM_022497 64432 Hs.657764 NM_022497 HPRD:17594 MRPS25 MRP-S25|RPMS25 mitochondrial ribosomal protein S25 protein-coding 13-PTNLD9-TUMOR_peak_35362 chr3 111820843 111821073 + 24.04251 NA intron (NM_001171747, intron 2 of 3) intron (NM_001171747, intron 2 of 3) -10690 NR_030292 693152 NR_030292 MIR567 MIRN567|hsa-mir-567 microRNA 567 ncRNA 13-PTNLD9-TUMOR_peak_50893 chr8 49332901 49333385 + 24.04251 NA Intergenic Intergenic -130984 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 13-PTNLD9-TUMOR_peak_52591 chr9 447744 447956 + 24.03457 NA intron (NM_001193536, intron 43 of 46) Tigger13a|DNA|TcMar-Tigger -22444 NM_001256876 23189 Hs.306764 NM_015158 HPRD:09651 KANK1 ANKRD15|CPSQ2|KANK KN motif and ankyrin repeat domains 1 protein-coding 13-PTNLD9-TUMOR_peak_9378 chr11 27885608 27885881 + 24.01683 NA Intergenic Intergenic -142139 NM_170731 627 Hs.502182 NM_001709 HPRD:00214 BDNF ANON2|BULN2 brain-derived neurotrophic factor protein-coding 13-PTNLD9-TUMOR_peak_19888 chr16 81601984 81602244 + 24.01683 NA intron (NM_030629, intron 1 of 20) intron (NM_030629, intron 1 of 20) 34607 NR_107008 102465840 NR_107008 MIR7854 hsa-mir-7854 microRNA 7854 ncRNA 13-PTNLD9-TUMOR_peak_13300 chr12 70360303 70360928 + 24.00914 NA Intergenic Intergenic 187883 NM_001024647 117177 Hs.258209 NM_022456 HPRD:10565 RAB3IP RABIN3 RAB3A interacting protein protein-coding 13-PTNLD9-TUMOR_peak_25673 chr19 55718479 55718799 + 24.00825 NA intron (NM_002842, intron 1 of 19) intron (NM_002842, intron 1 of 19) 2235 NM_002842 5794 Hs.179770 NM_002842 HPRD:03942 PTPRH R-PTP-H|SAP1 protein tyrosine phosphatase, receptor type, H protein-coding 13-PTNLD9-TUMOR_peak_2129 chr1 68036217 68036545 + 24.00617 NA Intergenic Intergenic -114479 NM_001199741 1647 Hs.80409 NM_001924 HPRD:00528 GADD45A DDIT1|GADD45 growth arrest and DNA-damage-inducible, alpha protein-coding 13-PTNLD9-TUMOR_peak_42524 chr5 146945171 146945389 + 24.00173 NA intron (NR_038902, intron 1 of 3) intron (NR_038902, intron 1 of 3) 5723 NR_038902 153469 Hs.184323 NR_038902 JAKMIP2-AS1 - JAKMIP2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_36063 chr3 136612775 136613150 + 24.00173 NA intron (NM_001291999, intron 1 of 3) ERVL-E-int|LTR|ERVL 31912 NM_006153 4690 Hs.126889 NM_006153 HPRD:02740 NCK1 NCK|NCKalpha|nck-1 NCK adaptor protein 1 protein-coding 13-PTNLD9-TUMOR_peak_48561 chr7 100660367 100660646 + 24.00173 NA intron (NM_001164462, intron 10 of 11) intron (NM_001164462, intron 10 of 11) 383 NR_120519 102724094 Hs.571256 NR_120519 LOC102724094 - uncharacterized LOC102724094 ncRNA 13-PTNLD9-TUMOR_peak_29505 chr2 201270739 201270957 + 24.00173 NA intron (NM_001282735, intron 3 of 12) L2a|LINE|L2 97175 NM_001282744 26010 Hs.120323 NM_015535 HPRD:10916 SPATS2L DNAPTP6|SGNP spermatogenesis associated, serine-rich 2-like protein-coding 13-PTNLD9-TUMOR_peak_34823 chr3 63610828 63611265 + 24.00064 NA Intergenic Intergenic -27298 NM_001080537 132203 Hs.130704 NM_001080537 SNTN S100A1L|S100AL|sentan sentan, cilia apical structure protein protein-coding 13-PTNLD9-TUMOR_peak_45195 chr6 46013114 46013248 + 23.97082 NA intron (NM_001114086, intron 1 of 5) intron (NM_001114086, intron 1 of 5) -29555 NM_016929 53405 Hs.485489 NM_016929 HPRD:06292 CLIC5 MST130|MSTP130 chloride intracellular channel 5 protein-coding 13-PTNLD9-TUMOR_peak_53455 chr9 67293047 67293253 + 23.97082 NA Intergenic Intergenic -3658 NR_002817 375719 Hs.658215 NR_002817 AQP7P1 bA251O17.3 aquaporin 7 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_4540 chr1 178506044 178506501 + 23.95869 NA Intergenic Intergenic -5659 NR_033186 400798 Hs.668085 NM_207467 HPRD:13417 C1orf220 - chromosome 1 open reading frame 220 ncRNA 13-PTNLD9-TUMOR_peak_8844 chr11 3301904 3302235 + 23.95485 NA Intergenic Intergenic -48453 NM_001039165 116534 Hs.745512 NM_001039165 ENSG00000184350 MRGPRE GPR167|MGRF|MRGE MAS-related GPR, member E protein-coding 13-PTNLD9-TUMOR_peak_6572 chr10 17105161 17105381 + 23.94459 NA intron (NM_001081, intron 22 of 66) intron (NM_001081, intron 22 of 66) 66545 NM_001081 8029 Hs.166206 NM_001081 HPRD:04296 CUBN IFCR|MGA1|gp280 cubilin (intrinsic factor-cobalamin receptor) protein-coding 13-PTNLD9-TUMOR_peak_15633 chr14 44786217 44786393 + 23.94459 NA Intergenic MER44B|DNA|TcMar-Tigger 190194 NM_032135 84075 Hs.307086 NM_032135 HPRD:12638 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 13-PTNLD9-TUMOR_peak_4783 chr1 186147805 186148070 + 23.93902 NA intron (NM_031935, intron 104 of 106) intron (NM_031935, intron 104 of 106) -117468 NM_001127709 10216 Hs.647723 NM_005807 HPRD:05047 PRG4 CACP|HAPO|JCAP|MSF|SZP|bG174L6.2 proteoglycan 4 protein-coding 13-PTNLD9-TUMOR_peak_6283 chr10 2992149 2992392 + 23.93902 NA Intergenic Intergenic -117442 NM_002627 5214 Hs.26010 NM_002627 HPRD:01384 PFKP ATP-PFK|PFK-C|PFK-P|PFKF phosphofructokinase, platelet protein-coding 13-PTNLD9-TUMOR_peak_53266 chr9 41100836 41101045 + 23.93588 NA Intergenic Intergenic 211045 NR_026803 401507 Hs.553802 NM_001012278 HPRD:17394 FAM74A1 FAM74A5 family with sequence similarity 74, member A1 ncRNA 13-PTNLD9-TUMOR_peak_34660 chr3 52483837 52484264 + 23.93588 NA Intergenic Intergenic 4007 NM_003280 7134 Hs.118845 NM_003280 HPRD:08930 TNNC1 CMD1Z|CMH13|TN-C|TNC|TNNC troponin C type 1 (slow) protein-coding 13-PTNLD9-TUMOR_peak_17204 chr15 45131153 45131442 + 23.92396 NA Intergenic Intergenic 102737 NM_001301145 140691 Hs.745248 NM_080745 HPRD:11518 TRIM69 HSD-34|HSD34|RNF36|Trif tripartite motif containing 69 protein-coding 13-PTNLD9-TUMOR_peak_29779 chr2 216922442 216922733 + 23.92396 NA intron (NM_018441, intron 4 of 7) MLT1K|LTR|ERVL-MaLR 23952 NM_018441 55825 Hs.281680 NM_018441 HPRD:09320 PECR DCRRP|HPDHASE|HSA250303|PVIARL|SDR29C1|TERP peroxisomal trans-2-enoyl-CoA reductase protein-coding 13-PTNLD9-TUMOR_peak_3213 chr1 143992723 143993081 + 23.92191 NA Intergenic Intergenic -79742 NM_001287385 554282 NM_001287385 FAM72C - family with sequence similarity 72, member C protein-coding 13-PTNLD9-TUMOR_peak_33908 chr3 14918533 14918884 + 23.92047 NA intron (NM_152536, intron 2 of 19) intron (NM_152536, intron 2 of 19) 58239 NM_152536 152273 Hs.412406 NM_152536 HPRD:13322 FGD5 ZFYVE23 FYVE, RhoGEF and PH domain containing 5 protein-coding 13-PTNLD9-TUMOR_peak_32293 chr21 38936737 38937007 + 23.92047 NA Intergenic Intergenic 144270 NM_001396 1859 Hs.368240 NM_001396 HPRD:09018 DYRK1A DYRK|DYRK1|HP86|MNB|MNBH|MRD7 dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A protein-coding 13-PTNLD9-TUMOR_peak_31369 chr20 48190499 48190885 + 23.89394 NA Intergenic MLT1K|LTR|ERVL-MaLR -5985 NM_000961 5740 Hs.302085 NM_000961 HPRD:09046 PTGIS CYP8|CYP8A1|PGIS|PTGI prostaglandin I2 (prostacyclin) synthase protein-coding 13-PTNLD9-TUMOR_peak_8847 chr11 3347719 3348044 + 23.89394 NA Intergenic Intergenic 52571 NM_001242842 7748 Hs.386294 NM_007152 HPRD:03718 ZNF195 HRF1|ZNFP104 zinc finger protein 195 protein-coding 13-PTNLD9-TUMOR_peak_53458 chr9 67301237 67301752 + 23.88694 NA Intergenic Intergenic -12002 NR_002817 375719 Hs.658215 NR_002817 AQP7P1 bA251O17.3 aquaporin 7 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_48914 chr7 126214838 126215190 + 23.88643 NA intron (NR_028041, intron 8 of 10) intron (NR_028041, intron 8 of 10) 483224 NR_030323 693177 NR_030323 MIR592 MIRN592|hsa-mir-592 microRNA 592 ncRNA 13-PTNLD9-TUMOR_peak_9715 chr11 47210904 47211213 + 23.88149 NA Intergenic Intergenic -3048 NM_001184974 29763 Hs.334639 NM_016223 HPRD:05937 PACSIN3 SDPIII protein kinase C and casein kinase substrate in neurons 3 protein-coding 13-PTNLD9-TUMOR_peak_50268 chr8 22036298 22036805 + 23.86199 NA intron (NR_033404, intron 6 of 15) intron (NR_033404, intron 6 of 15) 13898 NM_006129 649 Hs.1274 NM_001199 HPRD:00209 BMP1 OI13|PCOLC|PCP|PCP2|TLD bone morphogenetic protein 1 protein-coding 13-PTNLD9-TUMOR_peak_19512 chr16 64474532 64474717 + 23.85702 NA Intergenic Intergenic 681295 NM_001797 1009 Hs.116471 NM_001797 CDH11 CAD11|CDHOB|OB|OSF-4 cadherin 11, type 2, OB-cadherin (osteoblast) protein-coding 13-PTNLD9-TUMOR_peak_29108 chr2 174024579 174024769 + 23.85702 NA intron (NM_016653, intron 2 of 19) intron (NM_016653, intron 2 of 19) 84109 NM_016653 51776 Hs.444451 NM_016653 HPRD:11791 ZAK AZK|MLK7|MLT|MLTK|MRK|mlklak|pk sterile alpha motif and leucine zipper containing kinase AZK protein-coding 13-PTNLD9-TUMOR_peak_8897 chr11 5301931 5302073 + 23.85522 NA Intergenic Intergenic -10629 NM_005330 3046 Hs.655195 NM_005330 HPRD:00788 HBE1 HBE hemoglobin, epsilon 1 protein-coding 13-PTNLD9-TUMOR_peak_3110 chr1 120817185 120817406 + 23.85424 NA Intergenic Intergenic -21710 NM_001100910 653820 Hs.339665 NM_001100910 ENSG00000188610 FAM72B p17 family with sequence similarity 72, member B protein-coding 13-PTNLD9-TUMOR_peak_12163 chr12 12735794 12736159 + 23.84821 NA Intergenic Intergenic -20528 NM_030640 80824 Hs.536535 NM_030640 DUSP16 MKP-7|MKP7 dual specificity phosphatase 16 protein-coding 13-PTNLD9-TUMOR_peak_36222 chr3 141806602 141806849 + 23.84586 NA intron (NM_001178138, intron 3 of 13) intron (NM_001178138, intron 3 of 13) -59218 NM_006286 7029 Hs.379018 NM_006286 HPRD:03696 TFDP2 DP2 transcription factor Dp-2 (E2F dimerization partner 2) protein-coding 13-PTNLD9-TUMOR_peak_11216 chr11 112027831 112028362 + 23.83277 NA intron (NM_001562, intron 1 of 5) intron (NM_001562, intron 1 of 5) 6744 NM_001243211 3606 Hs.83077 NM_001562 HPRD:02976 IL18 IGIF|IL-18|IL-1g|IL1F4 interleukin 18 protein-coding 13-PTNLD9-TUMOR_peak_26700 chr2 43191646 43191989 + 23.83277 NA Intergenic Intergenic 74865 NR_110585 102723854 Hs.570165 NR_110585 LOC102723854 - uncharacterized LOC102723854 ncRNA 13-PTNLD9-TUMOR_peak_37840 chr4 7807372 7807546 + 23.83128 NA intron (NM_198595, intron 9 of 16) L2b|LINE|L2 51642 NR_026892 84740 Hs.663029 NM_032654 ENSG00000272620 AFAP1-AS1 AFAP1-AS|AFAP1AS AFAP1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_5519 chr1 223665461 223665814 + 23.83128 NA Intergenic Intergenic 98922 NM_152610 164127 Hs.192090 NM_152610 HPRD:08761 CCDC185 C1orf65 coiled-coil domain containing 185 protein-coding 13-PTNLD9-TUMOR_peak_22871 chr18 29092562 29092705 + 23.80490 NA intron (NM_001943, intron 1 of 14) intron (NM_001943, intron 1 of 14) 14606 NM_001943 1829 Hs.412597 NM_001943 HPRD:00516 DSG2 ARVC10|ARVD10|CDHF5|CMD1BB|HDGC desmoglein 2 protein-coding 13-PTNLD9-TUMOR_peak_6723 chr10 25251983 25252232 + 23.80490 NA Intergenic Intergenic -10534 NM_001282786 56952 Hs.405619 NM_020200 HPRD:17917 PRTFDC1 HHGP phosphoribosyl transferase domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_29284 chr2 183865611 183865987 + 23.80490 NA intron (NM_013436, intron 6 of 30) AluSx|SINE|Alu 37787 NM_205842 10787 Hs.603732 NM_013436 HPRD:05353 NCKAP1 HEM2|NAP1|NAP125|p125Nap1 NCK-associated protein 1 protein-coding 13-PTNLD9-TUMOR_peak_5003 chr1 202004030 202004265 + 23.80490 NA Intergenic Intergenic 24457 NM_001114309 1999 Hs.603657 NM_004433 HPRD:03722 ELF3 EPR-1|ERT|ESE-1|ESX E74-like factor 3 (ets domain transcription factor, epithelial-specific ) protein-coding 13-PTNLD9-TUMOR_peak_7276 chr10 48257379 48257558 + 23.79228 NA intron (NM_001271703, intron 1 of 9) intron (NM_001271703, intron 1 of 9) 2264 NM_001040084 653145 Hs.535306 NM_001040084 ENSG00000165390 ANXA8 ANX8 annexin A8 protein-coding 13-PTNLD9-TUMOR_peak_31596 chr20 52873701 52873978 + 23.77581 NA Intergenic MER5B|DNA|hAT-Charlie 49337 NM_002623 5203 Hs.91161 NM_002623 HPRD:05358 PFDN4 C1|PFD4 prefoldin subunit 4 protein-coding 13-PTNLD9-TUMOR_peak_30487 chr20 16560857 16561129 + 23.77581 NA Intergenic Intergenic -6914 NM_001199866 55614 Hs.101774 NM_024704 HPRD:10731 KIF16B C20orf23|KISC20ORF|SNX23 kinesin family member 16B protein-coding 13-PTNLD9-TUMOR_peak_17205 chr15 45196816 45197240 + 23.77347 NA Intergenic Intergenic -51872 NM_152448 145645 Hs.567701 NM_152448 HPRD:17528 C15orf43 - chromosome 15 open reading frame 43 protein-coding 13-PTNLD9-TUMOR_peak_42794 chr5 157375873 157376083 + 23.77347 NA Intergenic Intergenic -89795 NM_001195556 9685 Hs.644000 NM_014666 HPRD:06273 CLINT1 CLINT|ENTH|EPN4|EPNR clathrin interactor 1 protein-coding 13-PTNLD9-TUMOR_peak_6075 chr1 242005788 242006105 + 23.77347 NA Intergenic Intergenic -5547 NM_130398 9156 Hs.498248 NM_003686 HPRD:06932 EXO1 HEX1|hExoI exonuclease 1 protein-coding 13-PTNLD9-TUMOR_peak_22241 chr17 78830364 78830547 + 23.77347 NA intron (NM_020761, intron 12 of 33) intron (NM_020761, intron 12 of 33) -51023 NR_110852 101928855 Hs.670692 NR_110852 ENSG00000262833 LOC101928855 - uncharacterized LOC101928855 ncRNA 13-PTNLD9-TUMOR_peak_54588 chr9 118996365 118996681 + 23.77188 NA intron (NM_002581, intron 6 of 21) intron (NM_002581, intron 6 of 21) 80452 NM_002581 5069 Hs.643599 NM_002581 HPRD:01448 PAPPA ASBABP2|DIPLA1|IGFBP-4ase|PAPA|PAPP-A|PAPPA1 pregnancy-associated plasma protein A, pappalysin 1 protein-coding 13-PTNLD9-TUMOR_peak_32322 chr21 40159532 40160143 + 23.77188 NA Intergenic Intergenic -14436 NR_027065 400866 Hs.278704 NM_001001789 HPRD:10744 LINC00114 C21orf24|NCRNA00114 long intergenic non-protein coding RNA 114 ncRNA 13-PTNLD9-TUMOR_peak_24464 chr19 19701901 19702293 + 23.77188 NA intron (NR_038198, intron 2 of 7) intron (NR_038198, intron 2 of 7) 27628 NM_025245 80714 Hs.466257 NM_025245 HPRD:16287 PBX4 - pre-B-cell leukemia homeobox 4 protein-coding 13-PTNLD9-TUMOR_peak_54573 chr9 118353964 118354177 + 23.76727 NA Intergenic Intergenic 152448 NR_109805 101928775 Hs.522362 NR_109805 LOC101928775 - uncharacterized LOC101928775 ncRNA 13-PTNLD9-TUMOR_peak_45025 chr6 42194606 42194854 + 23.76727 NA 3' UTR (NM_001297573, exon 18 of 18) 3' UTR (NM_001297573, exon 18 of 18) -9097 NM_018141 55173 Hs.380887 NM_018141 HPRD:14775 MRPS10 MRP-S10|PNAS-122 mitochondrial ribosomal protein S10 protein-coding 13-PTNLD9-TUMOR_peak_8455 chr10 121221003 121221213 + 23.76727 NA Intergenic MER5A1|DNA|hAT-Charlie 74937 NM_002925 6001 Hs.501200 NM_002925 HPRD:04172 RGS10 - regulator of G-protein signaling 10 protein-coding 13-PTNLD9-TUMOR_peak_7994 chr10 91681247 91681543 + 23.76727 NA intron (NR_110655, intron 3 of 3) intron (NR_110655, intron 3 of 3) 35735 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 13-PTNLD9-TUMOR_peak_8938 chr11 7302357 7302628 + 23.76727 NA intron (NM_175733, intron 1 of 6) intron (NM_175733, intron 1 of 6) 29311 NM_175733 143425 Hs.177193 NM_175733 HPRD:11618 SYT9 - synaptotagmin IX protein-coding 13-PTNLD9-TUMOR_peak_24623 chr19 30101615 30101748 + 23.76162 NA intron (NM_006627, intron 3 of 6) intron (NM_006627, intron 3 of 6) 4511 NR_027368 10775 Hs.412870 NM_006627 POP4 RPP29 processing of precursor 4, ribonuclease P/MRP subunit (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_9132 chr11 13243912 13244181 + 23.76162 NA Intergenic Intergenic -55228 NM_001030273 406 Hs.65734 NM_001178 HPRD:03973 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator-like protein-coding 13-PTNLD9-TUMOR_peak_51874 chr8 125641880 125642308 + 23.73211 NA intron (NM_001282974, intron 3 of 13) intron (NM_001282974, intron 3 of 13) 90751 NM_001278645 4715 Hs.15977 NM_005005 HPRD:03264 NDUFB9 B22|CI-B22|LYRM3|UQOR22 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa protein-coding 13-PTNLD9-TUMOR_peak_1538 chr1 45011740 45011933 + 23.69855 NA TTS (NR_049849) TTS (NR_049849) 671 NR_049849 100847089 NR_049849 MIR5584 - microRNA 5584 ncRNA 13-PTNLD9-TUMOR_peak_36567 chr3 159444125 159444352 + 23.69855 NA intron (NM_001197108, intron 1 of 6) intron (NM_001197108, intron 1 of 6) 42163 NR_121669 100874433 Hs.601476 NR_121669 IQCJ-SCHIP1-AS1 uaz98 IQCJ-SCHIP1 readthrough antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_18464 chr16 9583790 9584056 + 23.69468 NA Intergenic Intergenic 74325 NR_106988 102465753 NR_106988 MIR7641-2 B-ATF|hsa-mir-7641-2 microRNA 7641-2 ncRNA 13-PTNLD9-TUMOR_peak_24505 chr19 21579761 21579963 + 23.69468 NA promoter-TSS (NM_145326) promoter-TSS (NM_145326) -59 NM_001076678 284443 Hs.656558 NM_145326 HPRD:10043 ZNF493 - zinc finger protein 493 protein-coding 13-PTNLD9-TUMOR_peak_40705 chr5 41414830 41415009 + 23.69468 NA intron (NM_001005473, intron 1 of 2) MER44B|DNA|TcMar-Tigger 95811 NM_001005473 345557 Hs.145404 NM_001005473 HPRD:17860 PLCXD3 - phosphatidylinositol-specific phospholipase C, X domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_41909 chr5 124730425 124730587 + 23.69468 NA Intergenic L2|LINE|L2 -98448 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LOC101927460 - uncharacterized LOC101927460 ncRNA 13-PTNLD9-TUMOR_peak_2168 chr1 69090035 69090208 + 23.69468 NA Intergenic MLT1D|LTR|ERVL-MaLR -127217 NM_001114120 55635 Hs.445098 NM_017779 HPRD:10879 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_47420 chr7 46803797 46804031 + 23.69468 NA Intergenic MER89|LTR|ERV1 817828 NM_022748 64759 Hs.520814 NM_022748 ENSG00000136205 TNS3 TEM6|TENS1 tensin 3 protein-coding 13-PTNLD9-TUMOR_peak_15447 chr14 31539736 31539985 + 23.69468 NA intron (NM_007077, intron 3 of 5) intron (NM_007077, intron 3 of 5) 44011 NM_001254728 11154 Hs.293411 NM_007077 HPRD:06257 AP4S1 AP47B|CLA20|CLAPS4|CPSQ6|SPG52 adaptor-related protein complex 4, sigma 1 subunit protein-coding 13-PTNLD9-TUMOR_peak_8968 chr11 8625871 8626133 + 23.69468 NA Intergenic L2a|LINE|L2 -10166 NM_001289058 65975 Hs.501833 NM_030906 HPRD:09642 STK33 - serine/threonine kinase 33 protein-coding 13-PTNLD9-TUMOR_peak_10771 chr11 79857360 79857579 + 23.69468 NA Intergenic MIRc|SINE|MIR 616377 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LOC101928944 - uncharacterized LOC101928944 ncRNA 13-PTNLD9-TUMOR_peak_376 chr1 10588321 10588686 + 23.69265 NA intron (NM_004565, intron 2 of 8) intron (NM_004565, intron 2 of 8) 53500 NM_004565 5195 Hs.149983 NM_004565 HPRD:03477 PEX14 NAPP2|PBD13A|Pex14p|dJ734G22.2 peroxisomal biogenesis factor 14 protein-coding 13-PTNLD9-TUMOR_peak_36497 chr3 156443577 156443795 + 23.69265 NA Intergenic Intergenic 49233 NM_001184718 25976 Hs.744050 NM_015508 HPRD:18192 TIPARP ARTD14|PARP7|pART14 TCDD-inducible poly(ADP-ribose) polymerase protein-coding 13-PTNLD9-TUMOR_peak_13621 chr12 104193457 104193905 + 23.68617 NA intron (NM_001031701, intron 4 of 13) intron (NM_001031701, intron 4 of 13) 41294 NM_001031701 51559 Hs.48428 NM_016575 HPRD:18241 NT5DC3 TU12B1-TY|TU12B1TY 5'-nucleotidase domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_6898 chr10 33422955 33423427 + 23.68420 NA Intergenic Intergenic -175898 NM_002211 3688 Hs.643813 NM_002211 HPRD:00628 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) protein-coding 13-PTNLD9-TUMOR_peak_28454 chr2 131565175 131565580 + 23.68061 NA Intergenic Intergenic 51513 NM_001105195 205147 Hs.369289 NM_152698 HPRD:08241 AMER3 FAM123C APC membrane recruitment protein 3 protein-coding 13-PTNLD9-TUMOR_peak_9470 chr11 33745871 33746119 + 23.67690 NA intron (NM_000611, intron 1 of 3) intron (NM_000611, intron 1 of 3) -1497 NM_001127227 966 Hs.278573 NM_000611 CD59 16.3A5|1F5|EJ16|EJ30|EL32|G344|HRF-20|HRF20|MAC-IP|MACIF|MEM43|MIC11|MIN1|MIN2|MIN3|MIRL|MSK21|p18-20 CD59 molecule, complement regulatory protein protein-coding 13-PTNLD9-TUMOR_peak_5008 chr1 202074660 202075157 + 23.65548 NA Intergenic Intergenic -17121 NM_004767 9283 Hs.132049 NM_004767 GPR37L1 ET(B)R-LP-2|ETBR-LP-2 G protein-coupled receptor 37 like 1 protein-coding 13-PTNLD9-TUMOR_peak_12266 chr12 18632226 18632506 + 23.65074 NA intron (NM_001288774, intron 18 of 32) MIR|SINE|MIR 217892 NM_004570 5288 Hs.22500 NM_004570 HPRD:16416 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma protein-coding 13-PTNLD9-TUMOR_peak_6538 chr10 14458363 14458567 + 23.65074 NA Intergenic Intergenic -20110 NR_031668 100302116 NR_031668 miRBase:MI0006401 MIR1265 MIRN1265|hsa-mir-1265 microRNA 1265 ncRNA 13-PTNLD9-TUMOR_peak_41039 chr5 62233619 62233770 + 23.65074 NA Intergenic MLT1J|LTR|ERVL-MaLR 359132 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 13-PTNLD9-TUMOR_peak_56639 chrX 152064952 152065294 + 23.64770 NA Intergenic L2b|LINE|L2 -17863 NM_001178106 7739 Hs.16622 NM_007150 HPRD:02306 ZNF185 - zinc finger protein 185 (LIM domain) protein-coding 13-PTNLD9-TUMOR_peak_51966 chr8 128050962 128051175 + 23.64770 NA Intergenic L2b|LINE|L2 25669 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_15226 chr14 20292039 20292227 + 23.63343 NA intron (NM_001004723, intron 1 of 1) intron (NM_001004723, intron 1 of 1) 20204 NM_001004723 390429 Hs.512490 NM_001004723 HPRD:17730 OR4N2 OR14-13|OR14-8 olfactory receptor, family 4, subfamily N, member 2 protein-coding 13-PTNLD9-TUMOR_peak_24182 chr19 14491753 14492072 + 23.63281 NA promoter-TSS (NM_001784) promoter-TSS (NM_001784) -44 NM_078481 976 Hs.466039 NM_001784 HPRD:03130 CD97 TM7LN1 CD97 molecule protein-coding 13-PTNLD9-TUMOR_peak_22643 chr18 12694152 12694432 + 23.62547 NA intron (NM_001271989, intron 5 of 10) intron (NM_001271989, intron 5 of 10) 8484 NR_073537 79959 Hs.236940 NM_024899 HPRD:12694 CEP76 C18orf9|HsT1705 centrosomal protein 76kDa protein-coding 13-PTNLD9-TUMOR_peak_52720 chr9 7185698 7185927 + 23.62547 NA Intergenic Intergenic 428171 NM_015061 23081 Hs.709425 NM_015061 HPRD:12016 KDM4C GASC1|JHDM3C|JMJD2C|TDRD14C|bA146B14.1 lysine (K)-specific demethylase 4C protein-coding 13-PTNLD9-TUMOR_peak_43577 chr6 4281843 4282453 + 23.62349 NA Intergenic CpG 145842 NR_103764 100507506 Hs.665936 NR_103764 ENSG00000234817 LOC100507506 - uncharacterized LOC100507506 ncRNA 13-PTNLD9-TUMOR_peak_5657 chr1 226905275 226905521 + 23.61650 NA intron (NM_002221, intron 2 of 7) intron (NM_002221, intron 2 of 7) 21478 NM_002221 3707 Hs.528087 NM_002221 HPRD:00942 ITPKB IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37 inositol-trisphosphate 3-kinase B protein-coding 13-PTNLD9-TUMOR_peak_5794 chr1 230817473 230817683 + 23.61650 NA intron (NM_007357, intron 10 of 17) intron (NM_007357, intron 10 of 17) 32758 NM_000029 183 Hs.19383 NM_000029 HPRD:00106 AGT ANHU|SERPINA8 angiotensinogen (serpin peptidase inhibitor, clade A, member 8) protein-coding 13-PTNLD9-TUMOR_peak_6475 chr10 11917857 11918199 + 23.61535 NA intron (NR_038222, intron 2 of 5) intron (NR_038222, intron 2 of 5) 18681 NR_038222 219731 Hs.576787 NR_038222 ENSG00000225778 PROSER2-AS1 - PROSER2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_49630 chr7 150600708 150600954 + 23.61320 NA Intergenic Intergenic 51266 NM_001091 26 Hs.647097 NM_001091 HPRD:00088 AOC1 ABP|ABP1|DAO|DAO1|KAO amine oxidase, copper containing 1 protein-coding 13-PTNLD9-TUMOR_peak_3428 chr1 147994111 147994736 + 23.60798 NA TTS (NR_104086) TTS (NR_104086) 277 NR_104086 101954277 NR_104086 RNVU1-19 RNU1-126|RNU1-147|RNVU1-13|vU1.13|vU1.19 RNA, variant U1 small nuclear 19 snRNA 13-PTNLD9-TUMOR_peak_48646 chr7 102186792 102187091 + 23.60769 NA intron (NM_001097615, intron 4 of 8) MIRc|SINE|MIR -4738 NM_001031618 441273 Hs.656428 NM_001031618 ENSG00000205238 SPDYE2 SPDYB2-L1 speedy/RINGO cell cycle regulator family member E2 protein-coding 13-PTNLD9-TUMOR_peak_43171 chr5 176249245 176249630 + 23.57578 NA intron (NM_133369, intron 1 of 14) intron (NM_133369, intron 1 of 14) 11877 NM_133369 90249 Hs.33191 NM_133369 ENSG00000113763 UNC5A UNC5H1 unc-5 homolog A (C. elegans) protein-coding 13-PTNLD9-TUMOR_peak_35865 chr3 129383905 129384230 + 23.55705 NA intron (NM_001017395, intron 4 of 5) intron (NM_001017395, intron 4 of 5) 23508 NR_033361 23023 Hs.477547 NM_015008 HPRD:15518 TMCC1 - transmembrane and coiled-coil domain family 1 protein-coding 13-PTNLD9-TUMOR_peak_47010 chr7 21050817 21051143 + 23.55572 NA Intergenic Intergenic 184063 NR_026673 222901 Hs.722187 NR_026673 ENSG00000219451 RPL23P8 RPL23_4_790 ribosomal protein L23 pseudogene 8 pseudo 13-PTNLD9-TUMOR_peak_22445 chr18 2442809 2443029 + 23.55572 NA Intergenic Intergenic 128570 NM_022840 64863 Hs.126888 NM_022840 HPRD:14390 METTL4 HsT661 methyltransferase like 4 protein-coding 13-PTNLD9-TUMOR_peak_13479 chr12 93293194 93293449 + 23.55572 NA intron (NM_003566, intron 1 of 28) intron (NM_003566, intron 1 of 28) 29786 NM_003566 8411 Hs.567367 NM_003566 HPRD:05460 EEA1 MST105|MSTP105|ZFYVE2 early endosome antigen 1 protein-coding 13-PTNLD9-TUMOR_peak_44278 chr6 26987617 26988178 + 23.55572 NA non-coding (NR_026776, exon 1 of 1) non-coding (NR_026776, exon 1 of 1) 188 NR_026776 100270746 Hs.590428 NR_026776 LOC100270746 - uncharacterized LOC100270746 ncRNA 13-PTNLD9-TUMOR_peak_3635 chr1 151653386 151653593 + 23.55572 NA intron (NM_030918, intron 7 of 11) intron (NM_030918, intron 7 of 11) 35303 NM_001172648 11189 Hs.26047 NM_007185 CELF3 BRUNOL1|CAGH4|ERDA4|ETR-1|TNRC4 CUGBP, Elav-like family member 3 protein-coding 13-PTNLD9-TUMOR_peak_36124 chr3 139048270 139048479 + 23.55572 NA Intergenic Intergenic -14487 NM_020191 56945 Hs.745001 NM_020191 HPRD:10430 MRPS22 C3orf5|COXPD5|GIBT|MRP-S22|RPMS22 mitochondrial ribosomal protein S22 protein-coding 13-PTNLD9-TUMOR_peak_36464 chr3 155109393 155109701 + 23.55572 NA Intergenic Intergenic -98058 NR_037902 100507537 Hs.518341 NR_037902 ENSG00000240045 LOC100507537 - uncharacterized LOC100507537 ncRNA 13-PTNLD9-TUMOR_peak_30879 chr20 34104027 34104387 + 23.55235 NA Intergenic Intergenic 13274 NR_026933 140873 Hs.158680 NM_080828 HPRD:12756 C20orf173 dJ477O4.4 chromosome 20 open reading frame 173 protein-coding 13-PTNLD9-TUMOR_peak_17994 chr15 91999359 91999805 + 23.55235 NA Intergenic L1PB1|LINE|L1 -6987 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 LOC101926928 - uncharacterized LOC101926928 ncRNA 13-PTNLD9-TUMOR_peak_44952 chr6 40875157 40875478 + 23.54910 NA intron (NR_110873, intron 1 of 5) intron (NR_110873, intron 1 of 5) 115702 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 13-PTNLD9-TUMOR_peak_53267 chr9 41138945 41139168 + 23.54910 NA Intergenic Intergenic 172929 NR_026803 401507 Hs.553802 NM_001012278 HPRD:17394 FAM74A1 FAM74A5 family with sequence similarity 74, member A1 ncRNA 13-PTNLD9-TUMOR_peak_23978 chr19 11146448 11146848 + 23.54910 NA intron (NM_001128844, intron 30 of 35) intron (NM_001128844, intron 30 of 35) 51820 NM_001128845 6597 Hs.327527 NM_003072 HPRD:04459 SMARCA4 BAF190|BAF190A|BRG1|MRD16|RTPS2|SNF2|SNF2L4|SNF2LB|SWI2|hSNF2b SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 protein-coding 13-PTNLD9-TUMOR_peak_30640 chr20 24653524 24653842 + 23.54910 NA Intergenic Intergenic 203848 NM_024893 79953 Hs.124638 NM_024893 HPRD:12766 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 13-PTNLD9-TUMOR_peak_13376 chr12 76371761 76372050 + 23.54910 NA Intergenic Intergenic 53651 NM_007350 22822 Hs.602085 NM_007350 PHLDA1 DT1P1B11|PHRIP|TDAG51 pleckstrin homology-like domain, family A, member 1 protein-coding 13-PTNLD9-TUMOR_peak_48748 chr7 106061646 106062174 + 23.54266 NA Intergenic Intergenic -136272 NM_005746 10135 Hs.489615 NM_005746 HPRD:09938 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 13-PTNLD9-TUMOR_peak_36693 chr3 170332526 170332684 + 23.53656 NA Intergenic Intergenic -28742 NM_020949 57709 Hs.596660 NM_020949 HPRD:17222 SLC7A14 PPP1R142 solute carrier family 7, member 14 protein-coding 13-PTNLD9-TUMOR_peak_48732 chr7 105470854 105471233 + 23.53656 NA intron (NM_152749, intron 2 of 3) intron (NM_152749, intron 2 of 3) 45988 NM_020725 222255 Hs.745056 NM_020725 HPRD:12508 ATXN7L1 ATXN7L4 ataxin 7-like 1 protein-coding 13-PTNLD9-TUMOR_peak_41511 chr5 90610166 90610406 + 23.53279 NA promoter-TSS (NR_103549) promoter-TSS (NR_103549) -67 NR_103549 100505994 Hs.628363 NR_103548 ENSG00000248323 LUCAT1 SCAL1 lung cancer associated transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_24907 chr19 39148443 39148834 + 23.52909 NA intron (NM_004924, intron 1 of 20) intron (NM_004924, intron 1 of 20) 10371 NM_004924 81 Hs.270291 NM_004924 ACTN4 ACTININ-4|FSGS|FSGS1 actinin, alpha 4 protein-coding 13-PTNLD9-TUMOR_peak_271 chr1 8271771 8272317 + 23.50763 NA Intergenic CpG -106101 NM_001080397 50651 Hs.463036 NM_001080397 ENSG00000162426 SLC45A1 DNB5 solute carrier family 45, member 1 protein-coding 13-PTNLD9-TUMOR_peak_39432 chr4 140566612 140566951 + 23.50763 NA Intergenic L1MB4|LINE|L1 -20141 NM_001204368 4258 Hs.81874 NM_002413 HPRD:03436 MGST2 GST2|MGST-II microsomal glutathione S-transferase 2 protein-coding 13-PTNLD9-TUMOR_peak_14649 chr13 41706655 41707083 + 23.50763 NA promoter-TSS (NM_152903) promoter-TSS (NM_152903) 67 NM_152903 89890 Hs.534040 NM_152903 HPRD:13758 KBTBD6 - kelch repeat and BTB (POZ) domain containing 6 protein-coding 13-PTNLD9-TUMOR_peak_26604 chr2 37926111 37926355 + 23.50763 NA Intergenic Intergenic -26555 NM_001270436 10602 Hs.369574 NM_006449 HPRD:09364 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein (Rho GTPase binding) 3 protein-coding 13-PTNLD9-TUMOR_peak_33674 chr3 9189224 9189555 + 23.48737 NA intron (NM_001033117, intron 1 of 21) intron (NM_001033117, intron 1 of 21) -44788 NR_121664 101927416 Hs.475364 NR_121663 LOC101927416 - uncharacterized LOC101927416 ncRNA 13-PTNLD9-TUMOR_peak_4673 chr1 182669417 182669739 + 23.48737 NA Intergenic Intergenic -27511 NM_001102450 85397 Hs.20982 NM_033345 HPRD:06221 RGS8 - regulator of G-protein signaling 8 protein-coding 13-PTNLD9-TUMOR_peak_23228 chr18 52274575 52275023 + 23.48534 NA Intergenic L2b|LINE|L2 16409 NM_173629 284254 Hs.376146 NM_173629 HPRD:08251 DYNAP C18orf26 dynactin associated protein protein-coding 13-PTNLD9-TUMOR_peak_42636 chr5 149853754 149854016 + 23.48187 NA Intergenic Intergenic 11670 NR_105061 102546298 Hs.570892 NR_105061 LOC102546298 - uncharacterized LOC102546298 ncRNA 13-PTNLD9-TUMOR_peak_35784 chr3 127487313 127487550 + 23.47937 NA intron (NM_001003794, intron 3 of 7) intron (NM_001003794, intron 3 of 7) 54294 NM_007283 11343 Hs.277035 NM_007283 HPRD:17574 MGLL HU-K5|HUK5|MAGL|MGL monoglyceride lipase protein-coding 13-PTNLD9-TUMOR_peak_19260 chr16 47921434 47921743 + 23.47937 NA promoter-TSS (NR_110649) promoter-TSS (NR_110649) -547 NR_110649 100507534 Hs.407601 NR_110649 ENSG00000261325 LOC100507534 - uncharacterized LOC100507534 ncRNA 13-PTNLD9-TUMOR_peak_40537 chr5 32224180 32224367 + 23.47937 NA Intergenic Intergenic -49848 NM_022130 64083 Hs.408909 NM_022130 HPRD:11007 GOLPH3 GOPP1|GPP34|MIDAS golgi phosphoprotein 3 (coat-protein) protein-coding 13-PTNLD9-TUMOR_peak_14243 chr12 125322789 125323211 + 23.47937 NA intron (NM_001082959, intron 1 of 11) intron (NM_001082959, intron 1 of 11) 25519 NM_005505 949 Hs.731377 NM_005505 HPRD:03024 SCARB1 CD36L1|CLA-1|CLA1|HDLQTL6|SR-BI|SRB1 scavenger receptor class B, member 1 protein-coding 13-PTNLD9-TUMOR_peak_3222 chr1 144072341 144072805 + 23.47613 NA Intergenic Intergenic -74238 NM_001278267 100288142 Hs.445080 NM_001278267 ENSG00000203832 NBPF20 - neuroblastoma breakpoint family, member 20 protein-coding 13-PTNLD9-TUMOR_peak_49146 chr7 131802062 131802281 + 23.47515 NA Intergenic Tigger12c|DNA|TcMar-Tigger 207192 NR_110836 101928782 Hs.571369 NR_110836 ENSG00000224865 LOC101928782 - uncharacterized LOC101928782 ncRNA 13-PTNLD9-TUMOR_peak_3783 chr1 154414505 154414778 + 23.47368 NA intron (NM_181359, intron 6 of 8) intron (NM_181359, intron 6 of 8) 36972 NM_181359 3570 Hs.135087 NM_000565 HPRD:01000 IL6R CD126|IL-6R-1|IL-6RA|IL6Q|IL6RA|IL6RQ|gp80 interleukin 6 receptor protein-coding 13-PTNLD9-TUMOR_peak_30741 chr20 30292332 30292641 + 23.47368 NA intron (NM_001191, intron 2 of 2) intron (NM_001191, intron 2 of 2) 18170 NM_138578 598 Hs.516966 NM_001191 HPRD:02497 BCL2L1 BCL-XL/S|BCL2L|BCLX|BCLXL|BCLXS|Bcl-X|PPP1R52|bcl-xL|bcl-xS BCL2-like 1 protein-coding 13-PTNLD9-TUMOR_peak_51947 chr8 127592138 127592467 + 23.47368 NA Intergenic Intergenic -21591 NM_174911 157638 Hs.741352 NM_174911 HPRD:11403 FAM84B BCMP101|NSE2 family with sequence similarity 84, member B protein-coding 13-PTNLD9-TUMOR_peak_28969 chr2 165777039 165777241 + 23.46251 NA intron (NM_001199148, intron 6 of 10) intron (NM_001199148, intron 6 of 10) 34895 NM_001199148 151258 Hs.658702 NM_173512 HPRD:08267 SLC38A11 AVT2 solute carrier family 38, member 11 protein-coding 13-PTNLD9-TUMOR_peak_52655 chr9 4114887 4115177 + 23.45788 NA intron (NM_001042413, intron 4 of 10) intron (NM_001042413, intron 4 of 10) 37151 NM_152629 169792 Hs.162125 NM_152629 HPRD:13582 GLIS3 ZNF515 GLIS family zinc finger 3 protein-coding 13-PTNLD9-TUMOR_peak_1113 chr1 36500286 36500550 + 23.45197 NA intron (NM_177422, intron 11 of 16) intron (NM_177422, intron 11 of 16) -49258 NM_014466 27285 Hs.127111 NM_014466 HPRD:16410 TEKT2 TEKTB1|TEKTIN-T|h-tektin-t tektin 2 (testicular) protein-coding 13-PTNLD9-TUMOR_peak_32919 chr22 23743410 23743701 + 23.43439 NA intron (NR_003950, intron 2 of 5) intron (NR_003950, intron 2 of 5) 1244 NR_003950 150244 Hs.386693 NM_152509 ZDHHC8P1 ZDHHC8P zinc finger, DHHC-type containing 8 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_37030 chr3 185514300 185514873 + 23.42297 NA intron (NM_001007225, intron 2 of 14) intron (NM_001007225, intron 2 of 14) 24333 NM_001291874 10644 Hs.35354 NM_006548 HPRD:10507 IGF2BP2 IMP-2|IMP2|VICKZ2 insulin-like growth factor 2 mRNA binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_45208 chr6 46686928 46687119 + 23.42227 NA intron (NM_005084, intron 2 of 11) intron (NM_005084, intron 2 of 11) 16128 NM_005084 7941 Hs.584823 NM_005084 HPRD:03407 PLA2G7 LDL-PLA2|LP-PLA2|PAFAD|PAFAH phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma) protein-coding 13-PTNLD9-TUMOR_peak_22415 chr18 987654 987941 + 23.42227 NA Intergenic MER41E|LTR|ERV1 82600 NM_001117 116 Hs.531719 NM_001117 HPRD:02369 ADCYAP1 PACAP adenylate cyclase activating polypeptide 1 (pituitary) protein-coding 13-PTNLD9-TUMOR_peak_5097 chr1 203527398 203527813 + 23.42227 NA Intergenic Intergenic 64334 NM_014359 26254 Hs.632468 NM_014359 HPRD:05498 OPTC OPT opticin protein-coding 13-PTNLD9-TUMOR_peak_34149 chr3 29228657 29228884 + 23.42227 NA Intergenic Intergenic 93660 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 13-PTNLD9-TUMOR_peak_49750 chr7 153428546 153428854 + 23.42084 NA Intergenic LTR16B2|LTR|ERVL -155482 NM_001039350 1804 Hs.490684 NM_001936 HPRD:00525 DPP6 DPPX|VF2 dipeptidyl-peptidase 6 protein-coding 13-PTNLD9-TUMOR_peak_2624 chr1 100046009 100046425 + 23.42084 NA Intergenic Intergenic -65214 NM_017734 54873 Hs.483993 NM_017734 HPRD:06673 PALMD C1orf11|PALML palmdelphin protein-coding 13-PTNLD9-TUMOR_peak_7445 chr10 60195142 60195391 + 23.42084 NA Intergenic Intergenic 50363 NM_001270782 7019 Hs.594250 NM_003201 HPRD:02702 TFAM MTTF1|MTTFA|TCF6|TCF6L1|TCF6L2|TCF6L3 transcription factor A, mitochondrial protein-coding 13-PTNLD9-TUMOR_peak_23803 chr19 7525477 7525814 + 23.42084 NA intron (NM_001130955, intron 10 of 19) intron (NM_001130955, intron 10 of 19) 12602 NR_024491 100128573 Hs.465761 NR_024491 LOC100128573 - uncharacterized LOC100128573 ncRNA 13-PTNLD9-TUMOR_peak_42963 chr5 169998428 169998766 + 23.40690 NA intron (NM_014592, intron 1 of 7) L2c|LINE|L2 67557 NM_001278340 30820 Hs.484111 NM_014592 HPRD:06879 KCNIP1 KCHIP1|VABP Kv channel interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_45259 chr6 49524295 49524478 + 23.40690 NA Intergenic Intergenic 6273 NM_001145652 135398 Hs.722010 NM_153344 HPRD:12852 C6orf141 - chromosome 6 open reading frame 141 protein-coding 13-PTNLD9-TUMOR_peak_2379 chr1 88421795 88422022 + 23.40690 NA Intergenic Intergenic -584570 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 13-PTNLD9-TUMOR_peak_31684 chr20 56270136 56270391 + 23.40333 NA intron (NM_199171, intron 1 of 3) intron (NM_199171, intron 1 of 3) -4583 NM_001255976 56937 Hs.517155 NM_020182 HPRD:09415 PMEPA1 STAG1|TMEPAI prostate transmembrane protein, androgen induced 1 protein-coding 13-PTNLD9-TUMOR_peak_1636 chr1 47077472 47077831 + 23.40237 NA intron (NM_201403, intron 2 of 3) intron (NM_201403, intron 2 of 3) 3154 NM_145279 148932 Hs.632401 NM_145279 HPRD:17584 MOB3C MOB1E|MOBKL2C MOB kinase activator 3C protein-coding 13-PTNLD9-TUMOR_peak_30955 chr20 35917930 35918177 + 23.37964 NA promoter-TSS (NM_022077) promoter-TSS (NM_022077) 2 NM_022077 63905 Hs.6126 NM_022077 HPRD:14356 MANBAL - mannosidase, beta A, lysosomal-like protein-coding 13-PTNLD9-TUMOR_peak_40985 chr5 58818099 58818358 + 23.37964 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) 64096 NM_006203 5144 Hs.117545 NM_006203 HPRD:02530 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D, cAMP-specific protein-coding 13-PTNLD9-TUMOR_peak_15160 chr13 114271452 114271829 + 23.37964 NA intron (NR_026580, intron 3 of 10) intron (NR_026580, intron 3 of 10) 32584 NM_007111 7027 Hs.79353 NM_007111 HPRD:01792 TFDP1 DP1|DRTF1|Dp-1 transcription factor Dp-1 protein-coding 13-PTNLD9-TUMOR_peak_49313 chr7 138619603 138619931 + 23.37953 NA intron (NM_001164665, intron 1 of 19) intron (NM_001164665, intron 1 of 19) 46297 NM_020910 57670 Hs.605380 NM_020910 ENSG00000122778 KIAA1549 - KIAA1549 protein-coding 13-PTNLD9-TUMOR_peak_36033 chr3 135030574 135030887 + 23.37068 NA Intergenic Intergenic 516631 NM_004441 2047 Hs.116092 NM_004441 HPRD:02790 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 13-PTNLD9-TUMOR_peak_43442 chr6 1940661 1940841 + 23.36983 NA intron (NM_001500, intron 6 of 10) intron (NM_001500, intron 6 of 10) 235474 NM_001253846 2762 Hs.144496 NM_001500 HPRD:11925 GMDS GMD|SDR3E1 GDP-mannose 4,6-dehydratase protein-coding 13-PTNLD9-TUMOR_peak_27541 chr2 88629660 88629888 + 23.36983 NA Intergenic Intergenic 122279 NM_001135649 344167 Hs.716722 NM_001135649 FOXI3 - forkhead box I3 protein-coding 13-PTNLD9-TUMOR_peak_46605 chr6 171005616 171005831 + 23.36953 NA Intergenic Intergenic -111943 NM_001199461 5134 Hs.367900 NM_002598 HPRD:02922 PDCD2 RP8|ZMYND7 programmed cell death 2 protein-coding 13-PTNLD9-TUMOR_peak_53394 chr9 66157001 66157177 + 23.35995 NA Intergenic Intergenic -300200 NR_121647 103352539 Hs.351215 NR_121647 LINC01410 - long intergenic non-protein coding RNA 1410 ncRNA 13-PTNLD9-TUMOR_peak_26867 chr2 47567293 47567588 + 23.35995 NA intron (NR_110208, intron 1 of 4) intron (NR_110208, intron 1 of 4) 4773 NR_110207 101927043 Hs.515976 NR_110207 ENSG00000234690 LOC101927043 - uncharacterized LOC101927043 ncRNA 13-PTNLD9-TUMOR_peak_53314 chr9 43380820 43381239 + 23.35995 NA Intergenic Intergenic -235545 NR_027472 642929 Hs.584288 NR_027472 LOC642929 - general transcription factor II, i pseudogene pseudo 13-PTNLD9-TUMOR_peak_35892 chr3 129914421 129914641 + 23.34169 NA Intergenic Intergenic -17132 NR_027898 646300 Hs.170475 NR_027898 COL6A4P2 COL6A4 collagen, type VI, alpha 4 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_7634 chr10 72050483 72050733 + 23.33786 NA Intergenic Intergenic -7158 NM_022146 64106 Hs.302026 NM_022146 NPFFR1 GPR147|NPFF1|NPFF1R1|OT7T022 neuropeptide FF receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_42810 chr5 158370101 158370308 + 23.33786 NA intron (NM_182708, intron 5 of 14) intron (NM_182708, intron 5 of 14) 156584 NM_001290360 1879 Hs.573143 NM_024007 HPRD:01256 EBF1 COE1|EBF|O/E-1|OLF1 early B-cell factor 1 protein-coding 13-PTNLD9-TUMOR_peak_37275 chr3 193500102 193500410 + 23.33701 NA Intergenic Intergenic -155135 NR_046634 100873941 Hs.679364 NR_046634 ENSG00000224855 OPA1-AS1 - OPA1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_19781 chr16 75517142 75517397 + 23.33514 NA intron (NM_021615, intron 1 of 2) intron (NM_021615, intron 1 of 2) 11657 NM_021615 4166 Hs.655622 NM_021615 CHST6 MCDC1 carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 6 protein-coding 13-PTNLD9-TUMOR_peak_50914 chr8 51052296 51052485 + 23.30164 NA intron (NM_001287814, intron 1 of 16) intron (NM_001287814, intron 1 of 16) 228051 NM_018967 54212 Hs.584914 NM_018967 HPRD:16373 SNTG1 G1SYN|SYN4 syntrophin, gamma 1 protein-coding 13-PTNLD9-TUMOR_peak_37704 chr4 4091849 4092028 + 23.30164 NA Intergenic Intergenic -134790 NR_024253 348926 Hs.591720 NR_024253 FAM86EP - family with sequence similarity 86, member A pseudogene pseudo 13-PTNLD9-TUMOR_peak_48959 chr7 127804691 127804912 + 23.29877 NA Intergenic Intergenic -43124 NR_029596 406917 NR_029596 miRBase:MI0000252 MIR129-1 MIR-129b|MIRN129-1 microRNA 129-1 ncRNA 13-PTNLD9-TUMOR_peak_22942 chr18 33889285 33889779 + 23.29736 NA intron (NM_001281739, intron 1 of 23) intron (NM_001281739, intron 1 of 23) 11873 NM_001281739 80206 Hs.630884 NM_025135 HPRD:16894 FHOD3 FHOS2|Formactin2 formin homology 2 domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_42086 chr5 133394540 133395092 + 23.29736 NA Intergenic Intergenic -53992 NM_003374 7416 Hs.519320 NM_003374 HPRD:05137 VDAC1 PORIN|VDAC-1 voltage-dependent anion channel 1 protein-coding 13-PTNLD9-TUMOR_peak_44453 chr6 30484309 30484586 + 23.29736 NA Intergenic Intergenic 27264 NM_005516 3133 Hs.650174 NM_005516 HPRD:00877 HLA-E EA1.2|EA2.1|HLA-6.2|MHC|QA1 major histocompatibility complex, class I, E protein-coding 13-PTNLD9-TUMOR_peak_37211 chr3 190104154 190104461 + 23.29573 NA Intergenic MER44B|DNA|TcMar-Tigger -1354 NM_006580 10686 Hs.251391 NM_006580 HPRD:04906 CLDN16 HOMG3|PCLN1 claudin 16 protein-coding 13-PTNLD9-TUMOR_peak_44018 chr6 18434726 18435038 + 23.28835 NA intron (NM_182757, intron 3 of 7) AluY|SINE|Alu 47301 NM_182757 255488 Hs.148741 NM_182757 HPRD:17126 RNF144B IBRDC2|PIR2|bA528A10.3|p53RFP ring finger protein 144B protein-coding 13-PTNLD9-TUMOR_peak_7337 chr10 50627116 50627439 + 23.28764 NA Intergenic MIRc|SINE|MIR -23215 NM_001276451 644168 Hs.534530 NM_001080520 DRGX DRG11|PRRXL1 dorsal root ganglia homeobox protein-coding 13-PTNLD9-TUMOR_peak_28894 chr2 161233172 161233353 + 23.28764 NA intron (NM_016836, intron 1 of 13) AluJb|SINE|Alu 31131 NR_039946 100616364 NR_039946 MIR4785 - microRNA 4785 ncRNA 13-PTNLD9-TUMOR_peak_53887 chr9 90230557 90230938 + 23.28764 NA intron (NM_001288729, intron 3 of 25) intron (NM_001288729, intron 3 of 25) -110227 NM_001912 1514 Hs.731507 NM_001912 HPRD:00293 CTSL CATL|CTSL1|MEP cathepsin L protein-coding 13-PTNLD9-TUMOR_peak_15664 chr14 48820237 48820526 + 23.27845 NA Intergenic MER44B|DNA|TcMar-Tigger -556164 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 13-PTNLD9-TUMOR_peak_46075 chr6 133452077 133452341 + 23.27845 NA Intergenic Intergenic 42990 NR_026969 285735 Hs.407549 NM_001037231 LINC00326 NCRNA00326 long intergenic non-protein coding RNA 326 ncRNA 13-PTNLD9-TUMOR_peak_11968 chr12 6480323 6480588 + 23.26444 NA intron (NM_001159576, intron 1 of 11) intron (NM_001159576, intron 1 of 11) 3935 NM_001159576 6337 Hs.591047 NM_001038 HPRD:02575 SCNN1A BESC2|ENaCa|ENaCalpha|SCNEA|SCNN1 sodium channel, non-voltage-gated 1 alpha subunit protein-coding 13-PTNLD9-TUMOR_peak_51472 chr8 103548016 103548244 + 23.26343 NA Intergenic Intergenic -15718 NM_024410 4956 Hs.159274 NM_024410 HPRD:01687 ODF1 CT133|HSPB10|ODF|ODF2|ODF27|ODFP|ODFPG|ODFPGA|ODFPGB|RT7|SODF outer dense fiber of sperm tails 1 protein-coding 13-PTNLD9-TUMOR_peak_50035 chr8 8153605 8154076 + 23.25384 NA Intergenic Intergenic 67748 NR_024362 286042 Hs.656318 NR_024361 ENSG00000173295 FAM86B3P - family with sequence similarity 86, member A pseudogene pseudo 13-PTNLD9-TUMOR_peak_13985 chr12 118270947 118271202 + 23.25384 NA intron (NM_173598, intron 3 of 19) MIRb|SINE|MIR 134954 NM_173598 283455 Hs.375836 NM_173598 HPRD:13952 KSR2 - kinase suppressor of ras 2 protein-coding 13-PTNLD9-TUMOR_peak_11240 chr11 112722944 112723175 + 23.25384 NA Intergenic L2c|LINE|L2 -108910 NM_181351 4684 Hs.503878 NM_000615 HPRD:00301 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 13-PTNLD9-TUMOR_peak_53632 chr9 75140136 75140480 + 23.24949 NA intron (NM_138691, intron 1 of 23) intron (NM_138691, intron 1 of 23) 3591 NM_138691 117531 Hs.670211 NM_138691 HPRD:05988 TMC1 DFNA36|DFNB11|DFNB7 transmembrane channel-like 1 protein-coding 13-PTNLD9-TUMOR_peak_49491 chr7 143131839 143132127 + 23.24763 NA intron (NR_033897, intron 2 of 4) intron (NR_033897, intron 2 of 4) -8563 NM_177437 338398 Hs.688222 NM_177437 HPRD:18159 TAS2R60 T2R56|T2R60 taste receptor, type 2, member 60 protein-coding 13-PTNLD9-TUMOR_peak_35604 chr3 123518436 123518857 + 23.23940 NA intron (NM_053025, intron 3 of 33) intron (NM_053025, intron 3 of 33) 84503 NM_053026 4638 Hs.477375 NM_005965 HPRD:02952 MYLK AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK myosin light chain kinase protein-coding 13-PTNLD9-TUMOR_peak_48313 chr7 92347376 92347689 + 23.23940 NA intron (NM_001259, intron 4 of 7) intron (NM_001259, intron 4 of 7) 115699 NM_001259 1021 Hs.119882 NM_001259 HPRD:04533 CDK6 PLSTIRE cyclin-dependent kinase 6 protein-coding 13-PTNLD9-TUMOR_peak_25761 chr19 57813393 57813808 + 23.23625 NA Intergenic L1MA5|LINE|L1 -18265 NM_213598 125919 Hs.202544 NM_213598 HPRD:15829 ZNF543 - zinc finger protein 543 protein-coding 13-PTNLD9-TUMOR_peak_26274 chr2 20777470 20778052 + 23.23501 NA Intergenic Intergenic 14547 NR_046836 100874343 Hs.591546 NR_046836 ENSG00000231948 HS1BP3-IT1 - HS1BP3 intronic transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_12998 chr12 56655702 56655883 + 23.23327 NA Intergenic Intergenic -3649 NM_173595 283373 Hs.524506 NM_173595 ENSG00000139645 ANKRD52 ANKRD33 ankyrin repeat domain 52 protein-coding 13-PTNLD9-TUMOR_peak_36371 chr3 149955211 149955623 + 23.23327 NA promoter-TSS (NR_110168) promoter-TSS (NR_110168) -889 NR_110168 101927992 Hs.534682 NR_110167 ENSG00000244541 LINC01213 - long intergenic non-protein coding RNA 1213 ncRNA 13-PTNLD9-TUMOR_peak_29236 chr2 179971416 179971597 + 23.22571 NA 3' UTR (NM_178123, exon 18 of 18) 3' UTR (NM_178123, exon 18 of 18) -56720 NM_173648 285025 Hs.324341 NM_173648 HPRD:08257 CCDC141 CAMDI coiled-coil domain containing 141 protein-coding 13-PTNLD9-TUMOR_peak_36520 chr3 157053594 157053771 + 23.22571 NA intron (NM_001167911, intron 9 of 12) intron (NM_001167911, intron 9 of 12) -100898 NM_002852 5806 Hs.591286 NM_002852 HPRD:03928 PTX3 TNFAIP5|TSG-14 pentraxin 3, long protein-coding 13-PTNLD9-TUMOR_peak_31218 chr20 44622178 44622419 + 23.22571 NA Intergenic Intergenic -15249 NM_004994 4318 Hs.297413 NM_004994 HPRD:00387 MMP9 CLG4B|GELB|MANDP2|MMP-9 matrix metallopeptidase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase) protein-coding 13-PTNLD9-TUMOR_peak_1493 chr1 44109763 44109975 + 23.22107 NA Intergenic AluY|SINE|Alu -5928 NM_014663 9682 Hs.155983 NM_014663 HPRD:17168 KDM4A JHDM3A|JMJD2|JMJD2A|TDRD14A lysine (K)-specific demethylase 4A protein-coding 13-PTNLD9-TUMOR_peak_20936 chr17 36432819 36432970 + 23.22107 NA Intergenic Intergenic -19638 NR_036750 440434 Hs.443837 NR_036750 ENSG00000174093 LOC440434 - aminopeptidase puromycin sensitive pseudogene pseudo 13-PTNLD9-TUMOR_peak_41091 chr5 66306646 66306998 + 23.22107 NA intron (NM_001290227, intron 2 of 25) intron (NM_001290227, intron 2 of 25) 6374 NM_001290227 375449 Hs.595458 NM_015183 HPRD:14195 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 13-PTNLD9-TUMOR_peak_188 chr1 6217850 6218060 + 23.22107 NA intron (NM_015557, intron 3 of 41) intron (NM_015557, intron 3 of 41) 22239 NM_015557 26038 Hs.522898 NM_015557 HPRD:10828 CHD5 CHD-5 chromodomain helicase DNA binding protein 5 protein-coding 13-PTNLD9-TUMOR_peak_51106 chr8 68605049 68605450 + 23.22107 NA intron (NM_020361, intron 1 of 10) intron (NM_020361, intron 1 of 10) 53371 NM_020361 57094 Hs.658850 NM_020361 HPRD:09891 CPA6 CPAH|ETL5|FEB11 carboxypeptidase A6 protein-coding 13-PTNLD9-TUMOR_peak_34273 chr3 38193388 38193782 + 23.21669 NA Intergenic MLT1J|LTR|ERVL-MaLR -13441 NM_005109 9943 Hs.475970 NM_005109 HPRD:06809 OXSR1 OSR1 oxidative stress responsive 1 protein-coding 13-PTNLD9-TUMOR_peak_28929 chr2 163101123 163101440 + 23.19227 NA Intergenic Intergenic -1236 NM_001291807 2191 Hs.654370 NM_004460 HPRD:02674 FAP DPPIV|FAPA fibroblast activation protein, alpha protein-coding 13-PTNLD9-TUMOR_peak_52298 chr8 141001463 141001908 + 23.19227 NA intron (NM_031466, intron 18 of 22) intron (NM_031466, intron 18 of 22) -286386 NM_001282534 51305 Hs.493037 NM_001282534 HPRD:16167 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium channel, subfamily K, member 9 protein-coding 13-PTNLD9-TUMOR_peak_40844 chr5 52096536 52096717 + 23.18198 NA exon (NM_015946, exon 2 of 3) exon (NM_015946, exon 2 of 3) 12490 NM_181501 3672 Hs.644352 NM_181501 ITGA1 CD49a|VLA1 integrin, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_37379 chr3 195408850 195409081 + 23.17993 NA intron (NR_003265, intron 13 of 14) intron (NR_003265, intron 13 of 14) -6404 NR_122105 440993 Hs.708999 NM_001013714 LINC00969 - long intergenic non-protein coding RNA 969 ncRNA 13-PTNLD9-TUMOR_peak_33582 chr3 4783456 4783622 + 23.17481 NA intron (NM_001168272, intron 43 of 60) intron (NM_001168272, intron 43 of 60) 9735 NR_004428 100126791 Hs.663059 NR_004428 ENSG00000235947 EGOT EGO|NCRNA00190 eosinophil granule ontogeny transcript (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_53913 chr9 91267217 91267654 + 23.17481 NA promoter-TSS (NM_001100111) promoter-TSS (NM_001100111) -360 NM_001100111 286238 Hs.434185 NM_001100111 LOC286238 - uncharacterized LOC286238 protein-coding 13-PTNLD9-TUMOR_peak_48137 chr7 79953417 79953766 + 23.17481 NA Intergenic Intergenic 50164 NR_110075 101927269 Hs.583232 NR_110075 LOC101927269 - uncharacterized LOC101927269 ncRNA 13-PTNLD9-TUMOR_peak_7696 chr10 73526504 73527111 + 23.15829 NA intron (NM_022153, intron 1 of 6) intron (NM_022153, intron 1 of 6) 6530 NM_022153 64115 Hs.47382 NM_022153 HPRD:15160 C10orf54 B7-H5|B7H5|GI24|PP2135|SISP1 chromosome 10 open reading frame 54 protein-coding 13-PTNLD9-TUMOR_peak_52726 chr9 8013004 8013293 + 23.15544 NA Intergenic MER5B|DNA|hAT-Charlie -213349 NM_033428 90871 Hs.7517 NM_033428 HPRD:12939 TMEM261 C9orf123 transmembrane protein 261 protein-coding 13-PTNLD9-TUMOR_peak_11522 chr11 124961374 124961616 + 23.15544 NA Intergenic MIR|SINE|MIR 20109 NM_001258247 219854 Hs.7626 NM_001080546 ENSG00000150433 TMEM218 - transmembrane protein 218 protein-coding 13-PTNLD9-TUMOR_peak_42519 chr5 146839049 146839408 + 23.12424 NA intron (NM_001197294, intron 1 of 13) intron (NM_001197294, intron 1 of 13) -5968 NM_001387 1809 Hs.519659 NM_001387 HPRD:03104 DPYSL3 CRMP-4|CRMP4|DRP-3|DRP3|LCRMP|ULIP|ULIP-1 dihydropyrimidinase-like 3 protein-coding 13-PTNLD9-TUMOR_peak_37978 chr4 10097824 10098135 + 23.12424 NA intron (NM_005112, intron 2 of 11) intron (NM_005112, intron 2 of 11) -17663 NR_036090 100423011 NR_036090 MIR3138 - microRNA 3138 ncRNA 13-PTNLD9-TUMOR_peak_46831 chr7 6493459 6493698 + 23.12424 NA Intergenic MER77|LTR|ERVL -5935 NM_139179 221955 Hs.487498 NM_139179 HPRD:17324 DAGLB DAGLBETA|KCCR13L diacylglycerol lipase, beta protein-coding 13-PTNLD9-TUMOR_peak_15964 chr14 62004254 62004651 + 23.12179 NA intron (NM_006255, intron 12 of 13) intron (NM_006255, intron 12 of 13) 32460 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LOC101927780 - uncharacterized LOC101927780 ncRNA 13-PTNLD9-TUMOR_peak_42604 chr5 149318592 149318897 + 23.11712 NA intron (NM_000440, intron 1 of 21) intron (NM_000440, intron 1 of 21) 5612 NM_000440 5145 Hs.567314 NM_000440 HPRD:01570 PDE6A CGPR-A|PDEA|RP43 phosphodiesterase 6A, cGMP-specific, rod, alpha protein-coding 13-PTNLD9-TUMOR_peak_33888 chr3 14413345 14413817 + 23.11438 NA Intergenic Intergenic -19513 NR_110135 101927565 Hs.306905 NR_110135 ENSG00000251576 LINC01267 - long intergenic non-protein coding RNA 1267 ncRNA 13-PTNLD9-TUMOR_peak_43454 chr6 2498526 2498853 + 23.11438 NA Intergenic MIR|SINE|MIR 136609 NM_152554 154386 Hs.680574 NM_152554 C6orf195 bA145H9.2 chromosome 6 open reading frame 195 protein-coding 13-PTNLD9-TUMOR_peak_31144 chr20 43321580 43321947 + 23.11350 NA Intergenic Intergenic -21383 NR_034104 79015 Hs.671450 NM_024049 ENSG00000132832 LINC01260 - long intergenic non-protein coding RNA 1260 ncRNA 13-PTNLD9-TUMOR_peak_52815 chr9 16705160 16705553 + 23.11350 NA intron (NM_017637, intron 3 of 6) intron (NM_017637, intron 3 of 6) 165430 NM_017637 54796 Hs.656581 NM_017637 HPRD:12274 BNC2 BSN2 basonuclin 2 protein-coding 13-PTNLD9-TUMOR_peak_36155 chr3 139895439 139895676 + 23.11350 NA intron (NM_022131, intron 2 of 16) intron (NM_022131, intron 2 of 16) 241530 NM_022131 64084 Hs.158529 NM_022131 CLSTN2 ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma calsyntenin 2 protein-coding 13-PTNLD9-TUMOR_peak_43819 chr6 12484049 12484287 + 23.09670 NA Intergenic Intergenic -91582 NR_103808 100887744 NR_103808 RNU6-48P RNU6-48 RNA, U6 small nuclear 48, pseudogene snRNA 13-PTNLD9-TUMOR_peak_1941 chr1 59193160 59193440 + 23.09670 NA Intergenic Intergenic -27553 NM_001085487 114803 Hs.744921 NM_001085487 ENSG00000162601 MYSM1 2A-DUB|2ADUB Myb-like, SWIRM and MPN domains 1 protein-coding 13-PTNLD9-TUMOR_peak_45189 chr6 45927321 45927502 + 23.08816 NA intron (NM_001114086, intron 1 of 5) Charlie1a|DNA|hAT-Charlie -22077 NR_045673 53405 Hs.485489 NM_016929 HPRD:06292 CLIC5 MST130|MSTP130 chloride intracellular channel 5 protein-coding 13-PTNLD9-TUMOR_peak_26286 chr2 23040209 23040363 + 23.08816 NA Intergenic MLT1D|LTR|ERVL-MaLR 280935 NR_110577 102723362 Hs.502887 NR_110577 LOC102723362 - uncharacterized LOC102723362 ncRNA 13-PTNLD9-TUMOR_peak_23391 chr18 61220430 61220693 + 23.08816 NA Intergenic MIR3|SINE|MIR -2832 NM_080474 89777 Hs.348541 NM_080474 HPRD:11548 SERPINB12 YUKOPIN serpin peptidase inhibitor, clade B (ovalbumin), member 12 protein-coding 13-PTNLD9-TUMOR_peak_14469 chr13 27769452 27769687 + 23.08816 NA Intergenic L3b|LINE|CR1 23173 NR_046548 100874071 Hs.735400 NR_046548 USP12-AS2 - USP12 antisense RNA 2 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_35036 chr3 77130435 77130768 + 23.08816 NA intron (NM_001290065, intron 1 of 26) intron (NM_001290065, intron 1 of 26) -16562 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout, axon guidance receptor, homolog 2 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_28180 chr2 116242066 116242338 + 23.08816 NA intron (NM_001004360, intron 3 of 25) MLT1K|LTR|ERVL-MaLR 322518 NM_001004360 57628 Hs.580539 NM_020868 HPRD:07083 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl-peptidase 10 (non-functional) protein-coding 13-PTNLD9-TUMOR_peak_18561 chr16 14051688 14051888 + 23.07224 NA Intergenic Intergenic 37774 NM_005236 2072 Hs.567265 NM_005236 HPRD:00594 ERCC4 ERCC11|FANCQ|RAD1|XPF excision repair cross-complementation group 4 protein-coding 13-PTNLD9-TUMOR_peak_26136 chr2 11514674 11515115 + 23.07224 NA Intergenic Intergenic -19213 NR_047499 100874055 Hs.102428 NR_047499 ENSG00000224177 LINC00570 ncRNA-a5 long intergenic non-protein coding RNA 570 ncRNA 13-PTNLD9-TUMOR_peak_30381 chr20 9032220 9032503 + 23.07224 NA Intergenic Intergenic -17340 NM_001172646 5332 Hs.472101 NM_000933 HPRD:02885 PLCB4 ARCND2|PI-PLC phospholipase C, beta 4 protein-coding 13-PTNLD9-TUMOR_peak_15312 chr14 23356544 23356795 + 23.07021 NA 3' UTR (NM_173527, exon 5 of 5) 3' UTR (NM_173527, exon 5 of 5) 4237 NM_173527 161253 Hs.444911 NM_173527 HPRD:08248 REM2 - RAS (RAD and GEM)-like GTP binding 2 protein-coding 13-PTNLD9-TUMOR_peak_42780 chr5 156944053 156944262 + 23.06379 NA intron (NM_033274, intron 7 of 22) intron (NM_033274, intron 7 of 22) 57130 NM_001099287 348938 Hs.4285 NM_001099287 ENSG00000172548 NIPAL4 ARCI6|ICHTHYIN|ICHYN NIPA-like domain containing 4 protein-coding 13-PTNLD9-TUMOR_peak_39613 chr4 151201765 151202067 + 23.05212 NA intron (NM_006726, intron 56 of 57) intron (NM_006726, intron 56 of 57) 202490 NR_036614 166614 Hs.591683 NM_152619 HPRD:13122 DCLK2 CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2 doublecortin-like kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_26446 chr2 28866832 28867174 + 23.05212 NA TTS (NM_153021) TTS (NM_153021) -107611 NM_206876 5500 Hs.702907 NM_002709 HPRD:11792 PPP1CB HEL-S-80p|PP-1B|PP1B|PP1beta|PPP1CD protein phosphatase 1, catalytic subunit, beta isozyme protein-coding 13-PTNLD9-TUMOR_peak_46181 chr6 143168126 143168366 + 23.05212 NA intron (NM_006734, intron 1 of 9) intron (NM_006734, intron 1 of 9) 98092 NM_006734 3097 Hs.510172 NM_006734 HPRD:00881 HIVEP2 HIV-EP2|MBP-2|MIBP1|SHN2|ZAS2|ZNF40B human immunodeficiency virus type I enhancer binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_29581 chr2 203645512 203645834 + 23.05163 NA intron (NM_001288622, intron 12 of 12) intron (NM_001288622, intron 12 of 12) 48284 NM_001288624 130026 Hs.516629 NM_138468 HPRD:12446 ICA1L ALS2CR14|ALS2CR15 islet cell autoantigen 1,69kDa-like protein-coding 13-PTNLD9-TUMOR_peak_3707 chr1 153337690 153338170 + 23.02750 NA Intergenic Intergenic 7600 NM_002965 6280 Hs.112405 NM_002965 HPRD:00472 S100A9 60B8AG|CAGB|CFAG|CGLB|L1AG|LIAG|MAC387|MIF|MRP14|NIF|P14 S100 calcium binding protein A9 protein-coding 13-PTNLD9-TUMOR_peak_37078 chr3 186619170 186619428 + 23.02355 NA Intergenic MLT1C|LTR|ERVL-MaLR -29016 NM_173216 6480 Hs.207459 NM_003032 HPRD:00184 ST6GAL1 SIAT1|ST6GalI|ST6N ST6 beta-galactosamide alpha-2,6-sialyltranferase 1 protein-coding 13-PTNLD9-TUMOR_peak_41382 chr5 78439915 78440197 + 23.02355 NA Intergenic MER5B|DNA|hAT-Charlie 32452 NM_001713 635 Hs.80756 NM_001713 HPRD:04200 BHMT BHMT1|HEL-S-61p betaine--homocysteine S-methyltransferase protein-coding 13-PTNLD9-TUMOR_peak_9495 chr11 34255645 34256235 + 23.02355 NA intron (NM_145804, intron 1 of 16) intron (NM_145804, intron 1 of 16) 123615 NM_145804 25841 Hs.23361 NM_145804 HPRD:10624 ABTB2 ABTB2A|BTBD22 ankyrin repeat and BTB (POZ) domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_4479 chr1 175237837 175238122 + 23.02355 NA Intergenic MLT1N2|LTR|ERVL-MaLR -75750 NM_001162894 9674 Hs.518138 NM_014656 HPRD:13776 KIAA0040 - KIAA0040 protein-coding 13-PTNLD9-TUMOR_peak_49459 chr7 142576115 142576403 + 23.01432 NA intron (NM_018646, intron 1 of 14) intron (NM_018646, intron 1 of 14) 7231 NM_018646 55503 Hs.302740 NM_014274 HPRD:05982 TRPV6 ABP/ZF|CAT1|CATL|ECAC2|HSA277909|LP6728|ZFAB transient receptor potential cation channel, subfamily V, member 6 protein-coding 13-PTNLD9-TUMOR_peak_44470 chr6 30663280 30663528 + 23.00999 NA Intergenic AluSx|SINE|Alu -4207 NM_007243 11270 Hs.519993 NM_007243 HPRD:10120 NRM NRM29 nurim (nuclear envelope membrane protein) protein-coding 13-PTNLD9-TUMOR_peak_27366 chr2 80281491 80281748 + 23.00694 NA intron (NM_001282597, intron 7 of 18) intron (NM_001282597, intron 7 of 18) -187910 NR_107047 102465877 NR_107047 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 13-PTNLD9-TUMOR_peak_18860 chr16 27651581 27651795 + 23.00575 NA intron (NM_015202, intron 5 of 27) intron (NM_015202, intron 5 of 27) 90220 NM_015202 23247 Hs.460459 NM_015202 HPRD:13806 KIAA0556 - KIAA0556 protein-coding 13-PTNLD9-TUMOR_peak_37127 chr3 187724453 187724899 + 22.99121 NA Intergenic Intergenic -146985 NM_001167672 4026 Hs.720220 NM_005578 HPRD:02828 LPP - LIM domain containing preferred translocation partner in lipoma protein-coding 13-PTNLD9-TUMOR_peak_43994 chr6 17907820 17908284 + 22.99121 NA intron (NM_001105568, intron 2 of 37) intron (NM_001105568, intron 2 of 37) 79802 NM_001105568 63971 Hs.94499 NM_022113 HPRD:09256 KIF13A RBKIN|bA500C11.2 kinesin family member 13A protein-coding 13-PTNLD9-TUMOR_peak_27067 chr2 64589835 64590297 + 22.98689 NA Intergenic Intergenic -91261 NM_014181 29094 Hs.372208 NM_014181 HPRD:13708 LGALSL GRP lectin, galactoside-binding-like protein-coding 13-PTNLD9-TUMOR_peak_44886 chr6 37762657 37762949 + 22.98128 NA Intergenic L2b|LINE|L2 -24504 NM_021943 60685 Hs.36959 NM_021943 HPRD:12121 ZFAND3 TEX27 zinc finger, AN1-type domain 3 protein-coding 13-PTNLD9-TUMOR_peak_51437 chr8 102110732 102111074 + 22.95895 NA Intergenic L2a|LINE|L2 46621 NR_033962 441374 Hs.652045 NR_033962 ENSG00000248599 FLJ42969 - uncharacterized LOC441374 ncRNA 13-PTNLD9-TUMOR_peak_30905 chr20 34730664 34731012 + 22.95895 NA intron (NM_001258330, intron 3 of 20) intron (NM_001258330, intron 3 of 20) -11824 NM_012156 2036 Hs.437422 NM_012156 HPRD:04193 EPB41L1 4.1N|MRD11 erythrocyte membrane protein band 4.1-like 1 protein-coding 13-PTNLD9-TUMOR_peak_6800 chr10 29889051 29889413 + 22.95325 NA intron (NM_003174, intron 3 of 35) intron (NM_003174, intron 3 of 35) 2043 NR_030634 100126327 NR_030634 miRBase:MI0005760 MIR938 MIRN938|hsa-mir-938 microRNA 938 ncRNA 13-PTNLD9-TUMOR_peak_35404 chr3 112967933 112968234 + 22.95325 NA intron (NM_033254, intron 2 of 19) intron (NM_033254, intron 2 of 19) 36708 NM_033254 91653 Hs.591318 NM_033254 ENSG00000144857 BOC CDON2 BOC cell adhesion associated, oncogene regulated protein-coding 13-PTNLD9-TUMOR_peak_25728 chr19 56617812 56618064 + 22.94434 NA intron (NM_001002836, intron 1 of 2) intron (NM_001002836, intron 1 of 2) 14804 NM_001002836 126208 Hs.397153 NM_001002836 HPRD:14032 ZNF787 TIP20 zinc finger protein 787 protein-coding 13-PTNLD9-TUMOR_peak_15211 chr14 19789860 19790142 + 22.93605 NA Intergenic Intergenic -104368 NR_073459 414763 Hs.617315 NR_073459 ENSG00000215394 BMS1P18 C14orf17|LINC00516 BMS1 pseudogene 18 pseudo 13-PTNLD9-TUMOR_peak_35975 chr3 133289020 133289315 + 22.93110 NA Intergenic Intergenic -3267 NM_001134422 55573 Hs.518265 NM_017548 HPRD:13627 CDV3 H41 CDV3 homolog (mouse) protein-coding 13-PTNLD9-TUMOR_peak_45618 chr6 83585561 83585794 + 22.92395 NA Intergenic Intergenic 189868 NM_198920 90025 Hs.148609 NM_198920 HPRD:12861 UBE3D C6orf157|H10BH|UBE2CBP|YJR141W ubiquitin protein ligase E3D protein-coding 13-PTNLD9-TUMOR_peak_15739 chr14 51313257 51313578 + 22.92395 NA Intergenic Intergenic -15578 NM_182946 51199 Hs.310429 NM_016350 HPRD:09785 NIN SCKL7 ninein (GSK3B interacting protein) protein-coding 13-PTNLD9-TUMOR_peak_16530 chr14 97846954 97847296 + 22.92395 NA Intergenic Intergenic -78028 NR_110165 101929241 Hs.650839 NR_110165 ENSG00000246084 LOC101929241 - uncharacterized LOC101929241 ncRNA 13-PTNLD9-TUMOR_peak_43914 chr6 15608719 15608908 + 22.92165 NA intron (NM_032122, intron 6 of 9) HAL1|LINE|L1 54476 NR_036448 84062 Hs.571148 NM_032122 HPRD:06190 DTNBP1 BLOC1S8|DBND|HPS7|My031|SDY dystrobrevin binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_47799 chr7 69245401 69245643 + 22.91774 NA intron (NM_001127231, intron 1 of 17) intron (NM_001127231, intron 1 of 17) 181617 NM_001127231 26053 Hs.21631 NM_015570 HPRD:06276 AUTS2 FBRSL2|MRD26 autism susceptibility candidate 2 protein-coding 13-PTNLD9-TUMOR_peak_5480 chr1 222638815 222639082 + 22.91160 NA Intergenic CpG 82496 NM_024746 79802 Hs.665660 NM_024746 HPRD:08587 HHIPL2 KIAA1822L HHIP-like 2 protein-coding 13-PTNLD9-TUMOR_peak_48498 chr7 99845061 99845293 + 22.91138 NA intron (NR_028038, intron 1 of 6) intron (NR_028038, intron 1 of 6) 24678 NR_028040 352954 Hs.556063 NM_178831 HPRD:17030 GATS STAG3OS GATS, stromal antigen 3 opposite strand protein-coding 13-PTNLD9-TUMOR_peak_22061 chr17 74390363 74390556 + 22.91138 NA intron (NM_022066, intron 15 of 17) intron (NM_022066, intron 15 of 17) 9170 NM_001142602 8877 Hs.68061 NM_021972 HPRD:04768 SPHK1 SPHK sphingosine kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_25371 chr19 49895266 49895437 + 22.91138 NA intron (NM_144688, intron 2 of 19) intron (NM_144688, intron 2 of 19) 3876 NM_144688 147872 Hs.662085 NM_144688 HPRD:08134 CCDC155 KASH5 coiled-coil domain containing 155 protein-coding 13-PTNLD9-TUMOR_peak_28884 chr2 161078285 161078562 + 22.91138 NA Intergenic Intergenic -21599 NM_001282388 3694 Hs.470399 NM_000888 HPRD:00947 ITGB6 - integrin, beta 6 protein-coding 13-PTNLD9-TUMOR_peak_2008 chr1 61946944 61947364 + 22.89667 NA Intergenic Intergenic -172760 NR_073400 414927 Hs.123471 NR_073400 MGC34796 - sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) pseudogene pseudo 13-PTNLD9-TUMOR_peak_44502 chr6 31005503 31005841 + 22.89459 NA Intergenic ERVL-E-int|LTR|ERVL -15555 NR_003948 285834 Hs.207528 NR_003948 ENSG00000228789 HCG22 PBMUCL2 HLA complex group 22 ncRNA 13-PTNLD9-TUMOR_peak_52806 chr9 16335939 16336194 + 22.89459 NA Intergenic Intergenic -59755 NR_073471 100129385 Hs.586441 NM_001271829 ENSG00000205549 C9orf92 Em:AL513424.1 chromosome 9 open reading frame 92 protein-coding 13-PTNLD9-TUMOR_peak_17726 chr15 78286469 78286693 + 22.89459 NA promoter-TSS (NR_026998) promoter-TSS (NR_026998) -14 NR_026998 91450 Hs.406766 NR_026998 LOC91450 - uncharacterized LOC91450 ncRNA 13-PTNLD9-TUMOR_peak_5266 chr1 206535447 206535766 + 22.88702 NA intron (NM_001170637, intron 1 of 19) intron (NM_001170637, intron 1 of 19) 19406 NM_001170637 23380 Hs.497575 NM_015326 SRGAP2 ARHGAP34|FNBP2|SRGAP2A|SRGAP3 SLIT-ROBO Rho GTPase activating protein 2 protein-coding 13-PTNLD9-TUMOR_peak_16027 chr14 65148936 65149365 + 22.88536 NA Intergenic Intergenic -22043 NM_015549 26030 Hs.509637 NM_015549 HPRD:17861 PLEKHG3 ARHGEF43|KIAA0599 pleckstrin homology domain containing, family G (with RhoGef domain) member 3 protein-coding 13-PTNLD9-TUMOR_peak_8589 chr10 128039012 128039426 + 22.86976 NA intron (NM_001288975, intron 1 of 18) intron (NM_001288975, intron 1 of 18) 37908 NM_001288975 8038 Hs.594351 NM_003474 HPRD:04092 ADAM12 ADAM12-OT1|CAR10|MCMP|MCMPMltna|MLTN|MLTNA ADAM metallopeptidase domain 12 protein-coding 13-PTNLD9-TUMOR_peak_11897 chr12 5185992 5186305 + 22.86976 NA Intergenic Intergenic 33063 NM_002234 3741 Hs.150208 NM_002234 HPRD:08888 KCNA5 ATFB7|HCK1|HK2|HPCN1|KV1.5|PCN1 potassium voltage-gated channel, shaker-related subfamily, member 5 protein-coding 13-PTNLD9-TUMOR_peak_49832 chr7 157085467 157086102 + 22.86108 NA Intergenic Intergenic -43926 NM_005494 10049 Hs.490745 NM_005494 HPRD:07107 DNAJB6 DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|MRJ|MSJ-1 DnaJ (Hsp40) homolog, subfamily B, member 6 protein-coding 13-PTNLD9-TUMOR_peak_1283 chr1 40399969 40400626 + 22.85639 NA Intergenic Intergenic -20487 NM_001136493 84879 Hs.655177 NM_032793 HPRD:07861 MFSD2A MFSD2|NLS1 major facilitator superfamily domain containing 2A protein-coding 13-PTNLD9-TUMOR_peak_21969 chr17 73092194 73092537 + 22.85639 NA intron (NM_001271765, intron 3 of 6) intron (NM_001271765, intron 3 of 6) 8329 NM_004695 9121 Hs.592095 NM_004695 HPRD:04856 SLC16A5 MCT5|MCT6 solute carrier family 16 (monocarboxylate transporter), member 5 protein-coding 13-PTNLD9-TUMOR_peak_26005 chr2 7965739 7966139 + 22.84665 NA Intergenic Intergenic 73847 NR_110256 101929551 Hs.116006 NR_110256 LOC101929551 - uncharacterized LOC101929551 ncRNA 13-PTNLD9-TUMOR_peak_36828 chr3 177527995 177528300 + 22.84216 NA Intergenic Intergenic -6506 NR_110826 102724550 Hs.570526 NR_110826 LOC102724550 - uncharacterized LOC102724550 ncRNA 13-PTNLD9-TUMOR_peak_31167 chr20 43767236 43767617 + 22.84216 NA Intergenic Intergenic -14320 NM_080869 128488 Hs.352180 NM_080869 HPRD:15674 WFDC12 C20orf122|SWAM2|WAP2|dJ211D12.4 WAP four-disulfide core domain 12 protein-coding 13-PTNLD9-TUMOR_peak_23212 chr18 49687103 49687366 + 22.84060 NA Intergenic Intergenic -179308 NM_005215 1630 Hs.162025 NM_005215 DCC CRC18|CRCR1|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 13-PTNLD9-TUMOR_peak_44348 chr6 28072472 28072783 + 22.83000 NA Intergenic CpG 14042 NR_024063 221584 Hs.634723 NR_024063 ZSCAN12P1 ZNF187p1|ZNF305P1|ZNF96L1|ZNF96P1|ZSCAN12L1|dJ313I6.7 zinc finger and SCAN domain containing 12 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_20571 chr17 17824631 17824885 + 22.83000 NA intron (NM_001033551, intron 1 of 13) intron (NM_001033551, intron 1 of 13) 51026 NM_001082968 146691 Hs.462379 NM_144678 HPRD:18213 TOM1L2 - target of myb1-like 2 (chicken) protein-coding 13-PTNLD9-TUMOR_peak_1382 chr1 42130976 42131249 + 22.82358 NA intron (NM_001127714, intron 1 of 7) intron (NM_001127714, intron 1 of 7) -180768 NM_001956 1907 Hs.1407 NM_001956 HPRD:07173 EDN2 ET2|PPET2 endothelin 2 protein-coding 13-PTNLD9-TUMOR_peak_5145 chr1 204386829 204387002 + 22.81181 NA Intergenic L2c|LINE|L2 -5970 NM_032833 84919 Hs.304376 NM_032833 HPRD:17892 PPP1R15B CREP protein phosphatase 1, regulatory subunit 15B protein-coding 13-PTNLD9-TUMOR_peak_26441 chr2 28833429 28833762 + 22.81181 NA intron (NM_001170585, intron 42 of 56) L3|LINE|CR1 114657 NM_153021 151056 Hs.444933 NM_153021 HPRD:15141 PLB1 PLB|PLB/LIP|hPLB phospholipase B1 protein-coding 13-PTNLD9-TUMOR_peak_53337 chr9 44539730 44540159 + 22.81050 NA Intergenic Intergenic 155359 NR_121564 101927827 Hs.738704 NR_121564 ENSG00000229311 LOC101927827 - uncharacterized LOC101927827 ncRNA 13-PTNLD9-TUMOR_peak_49132 chr7 131339508 131339679 + 22.81050 NA Intergenic Intergenic -98217 NM_001018111 5420 Hs.744213 NM_005397 HPRD:04025 PODXL Gp200|PC|PCLP|PCLP-1 podocalyxin-like protein-coding 13-PTNLD9-TUMOR_peak_55190 chr9_gl000200_random 87727 88156 + 22.81050 NA NA Intergenic NA NA 13-PTNLD9-TUMOR_peak_5899 chr1 234630993 234631507 + 22.80513 NA Intergenic Intergenic -16401 NM_005646 6894 Hs.498115 NM_005646 HPRD:05445 TARBP1 TRM3|TRP-185|TRP185 TAR (HIV-1) RNA binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_34643 chr3 52080305 52080869 + 22.80447 NA Intergenic Intergenic 9874 NM_001947 1849 Hs.591664 NM_001947 HPRD:04125 DUSP7 MKPX|PYST2 dual specificity phosphatase 7 protein-coding 13-PTNLD9-TUMOR_peak_52557 chr8 146104176 146104746 + 22.79603 NA 3' UTR (NM_001109689, exon 6 of 6) 3' UTR (NM_001109689, exon 6 of 6) 22385 NM_001109689 58500 Hs.532277 NM_021061 HPRD:15758 ZNF250 ZFP647|ZNF647 zinc finger protein 250 protein-coding 13-PTNLD9-TUMOR_peak_3751 chr1 153777891 153778152 + 22.78395 NA 3' UTR (NM_020699, exon 11 of 11) 3' UTR (NM_020699, exon 11 of 11) 30253 NM_024330 11000 Hs.438723 NM_024330 HPRD:11967 SLC27A3 ACSVL3|FATP3|VLCS-3 solute carrier family 27 (fatty acid transporter), member 3 protein-coding 13-PTNLD9-TUMOR_peak_37932 chr4 9104285 9104622 + 22.78395 NA Intergenic HERVE-int|LTR|ERV1 -107930 NM_001256852 100287144 Hs.741130 NM_001256852 ENSG00000231396 USP17L10 - ubiquitin specific peptidase 17-like family member 10 protein-coding 13-PTNLD9-TUMOR_peak_22766 chr18 20695670 20696092 + 22.78395 NA Intergenic L1MB3|LINE|L1 -18647 NM_001256438 91768 Hs.11108 NM_138375 HPRD:16461 CABLES1 CABL1|CABLES|HsT2563|IK3-1 Cdk5 and Abl enzyme substrate 1 protein-coding 13-PTNLD9-TUMOR_peak_40845 chr5 52283607 52283983 + 22.78298 NA Intergenic Intergenic -1361 NM_002203 3673 Hs.482077 NM_002203 HPRD:01893 ITGA2 BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) protein-coding 13-PTNLD9-TUMOR_peak_21350 chr17 46204861 46205065 + 22.77344 NA Intergenic Intergenic 20016 NM_013323 29916 Hs.15827 NM_013323 HPRD:15410 SNX11 - sorting nexin 11 protein-coding 13-PTNLD9-TUMOR_peak_48560 chr7 100626710 100627028 + 22.77344 NA intron (NM_001164462, intron 1 of 11) L2b|LINE|L2 13965 NM_001164462 10071 Hs.489355 NM_001164462 ENSG00000205277 MUC12 MUC-11|MUC-12|MUC11 mucin 12, cell surface associated protein-coding 13-PTNLD9-TUMOR_peak_20031 chr16 87615562 87615774 + 22.77344 NA Intergenic L1ME3A|LINE|L1 -19773 NR_073379 57338 Hs.592068 NM_020655 HPRD:05589 JPH3 CAGL237|HDL2|JP-3|JP3|TNRC22 junctophilin 3 protein-coding 13-PTNLD9-TUMOR_peak_26192 chr2 16014608 16014860 + 22.77344 NA Intergenic Intergenic -45787 NR_125783 103752554 Hs.269571 NR_125783 MYCNUT MYCNUN|lncUSMycN MYCN upstream transcript (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_36410 chr3 151280796 151281030 + 22.77344 NA Intergenic LTR32|LTR|ERVL 2870 NR_049818 100847036 NR_049818 miRBase:MI0018165 MIR5186 - microRNA 5186 ncRNA 13-PTNLD9-TUMOR_peak_18707 chr16 20863050 20863209 + 22.77315 NA Intergenic Intergenic -45334 NM_001142725 112479 Hs.248437 NM_080663 HPRD:14456 ERI2 EXOD1|ZGRF5 ERI1 exoribonuclease family member 2 protein-coding 13-PTNLD9-TUMOR_peak_41238 chr5 72326900 72327155 + 22.77315 NA intron (NM_001146032, intron 7 of 24) intron (NM_001146032, intron 7 of 24) 75219 NM_001146032 115548 Hs.165762 NM_138782 HPRD:13319 FCHO2 - FCH domain only 2 protein-coding 13-PTNLD9-TUMOR_peak_4735 chr1 184168632 184168875 + 22.76636 NA Intergenic Intergenic 147968 NR_125335 116461 Hs.548197 NM_052965 HPRD:12292 TSEN15 C1orf19|sen15 TSEN15 tRNA splicing endonuclease subunit protein-coding 13-PTNLD9-TUMOR_peak_40261 chr5 9060080 9060429 + 22.76636 NA intron (NM_003966, intron 18 of 22) intron (NM_003966, intron 18 of 22) -6247 NR_039779 100616326 NR_039779 MIR4636 - microRNA 4636 ncRNA 13-PTNLD9-TUMOR_peak_47935 chr7 73693975 73694286 + 22.76636 NA Intergenic Intergenic -9675 NM_032421 7461 Hs.647018 NM_003388 HPRD:09140 CLIP2 CLIP|CLIP-115|CYLN2|WBSCR3|WBSCR4|WSCR3|WSCR4 CAP-GLY domain containing linker protein 2 protein-coding 13-PTNLD9-TUMOR_peak_37807 chr4 7000850 7001328 + 22.76636 NA intron (NM_001286805, intron 4 of 11) L2b|LINE|L2 11854 NM_001286805 57533 Hs.518611 NM_020773 HPRD:11623 TBC1D14 - TBC1 domain family, member 14 protein-coding 13-PTNLD9-TUMOR_peak_46759 chr7 4671366 4671785 + 22.76636 NA Intergenic Intergenic -50355 NM_001037165 221937 Hs.487393 NM_001037165 HPRD:18750 FOXK1 FOXK1L forkhead box K1 protein-coding 13-PTNLD9-TUMOR_peak_44844 chr6 36997228 36997407 + 22.76636 NA TTS (NM_173558) TTS (NM_173558) 23894 NM_173558 221472 Hs.509664 NM_173558 HPRD:05478 FGD2 ZFYVE4 FYVE, RhoGEF and PH domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_23395 chr18 61549913 61550325 + 22.76636 NA Intergenic Intergenic -4820 NM_002575 5055 Hs.594481 NM_002575 HPRD:01420 SERPINB2 HsT1201|PAI|PAI-2|PAI2|PLANH2 serpin peptidase inhibitor, clade B (ovalbumin), member 2 protein-coding 13-PTNLD9-TUMOR_peak_42691 chr5 150992717 150992975 + 22.76316 NA Intergenic L2c|LINE|L2 -44341 NM_001447 2196 Hs.591255 NM_001447 HPRD:05041 FAT2 CDHF8|CDHR9|HFAT2|MEGF1 FAT atypical cadherin 2 protein-coding 13-PTNLD9-TUMOR_peak_46558 chr6 168721322 168721684 + 22.76316 NA Intergenic L1MB7|LINE|L1 -1069 NM_214462 168002 Hs.673059 NM_214462 HPRD:12345 DACT2 C6orf116|DAPPER2|DPR2|bA503C24.7 dishevelled-binding antagonist of beta-catenin 2 protein-coding 13-PTNLD9-TUMOR_peak_47510 chr7 54052533 54052801 + 22.76316 NA Intergenic Intergenic -173043 NR_038371 401337 Hs.531378 NM_001001707 HPRD:16997 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 13-PTNLD9-TUMOR_peak_21772 chr17 62675969 62676308 + 22.76316 NA Intergenic Intergenic -17752 NM_022739 64750 Hs.515011 NM_022739 SMURF2 - SMAD specific E3 ubiquitin protein ligase 2 protein-coding 13-PTNLD9-TUMOR_peak_29241 chr2 180408056 180408375 + 22.76316 NA intron (NR_104234, intron 4 of 12) intron (NR_104234, intron 4 of 12) 19100 NM_001113398 151126 Hs.655005 NM_152520 HPRD:15823 ZNF385B ZNF533 zinc finger protein 385B protein-coding 13-PTNLD9-TUMOR_peak_26666 chr2 39869573 39869831 + 22.76316 NA Intergenic Intergenic -22936 NM_001167959 130733 Hs.40808 NM_152390 HPRD:14577 TMEM178A TMEM178 transmembrane protein 178A protein-coding 13-PTNLD9-TUMOR_peak_52845 chr9 19161709 19162050 + 22.76277 NA Intergenic Intergenic -34275 NM_001122 123 Hs.3416 NM_001122 HPRD:00057 PLIN2 ADFP|ADRP perilipin 2 protein-coding 13-PTNLD9-TUMOR_peak_47950 chr7 74050513 74050786 + 22.76277 NA Intergenic AluSz|SINE|Alu -21342 NM_032999 2969 Hs.647041 NM_001518 HPRD:03399 GTF2I BAP135|BTKAP1|DIWS|GTFII-I|IB291|SPIN|TFII-I|WBS|WBSCR6 general transcription factor IIi protein-coding 13-PTNLD9-TUMOR_peak_14143 chr12 122885108 122885297 + 22.75150 NA TTS (NR_045382) TTS (NR_045382) 5113 NR_045382 100507066 Hs.624253 NR_045382 CLIP1-AS1 - CLIP1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_1500 chr1 44287782 44288057 + 22.74292 NA intron (NM_001270462, intron 3 of 7) intron (NM_001270462, intron 3 of 7) -16375 NR_106727 102464830 NR_106727 MIR6079 hsa-mir-6079 microRNA 6079 ncRNA 13-PTNLD9-TUMOR_peak_34366 chr3 43749564 43749767 + 22.74292 NA intron (NM_016006, intron 3 of 6) intron (NM_016006, intron 3 of 6) 17290 NM_016006 51099 Hs.19385 NM_016006 ABHD5 CDS|CGI58|IECN2|NCIE2 abhydrolase domain containing 5 protein-coding 13-PTNLD9-TUMOR_peak_4294 chr1 167078461 167079074 + 22.72875 NA intron (NM_001080426, intron 1 of 4) L1PBa|LINE|L1 14680 NM_001080426 92235 Hs.632462 NM_001080426 ENSG00000198842 DUSP27 - dual specificity phosphatase 27 (putative) protein-coding 13-PTNLD9-TUMOR_peak_52149 chr8 134029511 134029736 + 22.70567 NA intron (NM_003235, intron 37 of 47) MER46C|DNA|TcMar-Tigger 29203 NR_107002 102466865 NR_107002 MIR7848 hsa-mir-7848 microRNA 7848 ncRNA 13-PTNLD9-TUMOR_peak_14008 chr12 120137235 120137424 + 22.70567 NA intron (NM_001206999, intron 44 of 47) MLT1G1|LTR|ERVL-MaLR 14200 NR_031589 100302274 NR_031589 MIR1178 MIRN1178|hsa-mir-1178 microRNA 1178 ncRNA 13-PTNLD9-TUMOR_peak_46708 chr7 2264653 2265283 + 22.70567 NA intron (NM_001013836, intron 4 of 18) intron (NM_001013836, intron 4 of 18) 7615 NM_003550 8379 Hs.654838 NM_003550 HPRD:04065 MAD1L1 MAD1|PIG9|TP53I9|TXBP181 MAD1 mitotic arrest deficient-like 1 (yeast) protein-coding 13-PTNLD9-TUMOR_peak_8952 chr11 8090245 8090558 + 22.70567 NA non-coding (NR_120537, exon 4 of 4) non-coding (NR_120537, exon 4 of 4) 8816 NR_120537 101927917 Hs.680586 NR_120537 TUB-AS1 - TUB antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_22613 chr18 11859908 11860316 + 22.70312 NA intron (NM_001261444, intron 1 of 7) intron (NM_001261444, intron 1 of 7) 2675 NM_001261444 2774 Hs.136295 NM_002071 HPRD:00758 GNAL DYT25 guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type protein-coding 13-PTNLD9-TUMOR_peak_9492 chr11 34226515 34226743 + 22.69995 NA intron (NM_145804, intron 1 of 16) L2b|LINE|L2 99518 NM_001144030 55226 Hs.577281 NM_024662 HPRD:10964 NAT10 ALP|NET43 N-acetyltransferase 10 (GCN5-related) protein-coding 13-PTNLD9-TUMOR_peak_2869 chr1 112794312 112794669 + 22.69995 NA Intergenic Intergenic -144310 NM_018704 55917 Hs.744100 NM_018704 HPRD:10906 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 13-PTNLD9-TUMOR_peak_11567 chr11 126861916 126862361 + 22.69234 NA intron (NM_001301097, intron 1 of 15) L3|LINE|CR1 -3700 NR_036126 100422918 NR_036126 MIR3167 - microRNA 3167 ncRNA 13-PTNLD9-TUMOR_peak_2481 chr1 93416049 93416249 + 22.69234 NA intron (NM_001252273, intron 1 of 4) intron (NM_001252273, intron 1 of 4) 10930 NM_001252269 388650 Hs.180946 NM_001006605 HPRD:14204 FAM69A - family with sequence similarity 69, member A protein-coding 13-PTNLD9-TUMOR_peak_26723 chr2 43427151 43427364 + 22.68376 NA Intergenic Intergenic 26488 NM_006887 678 Hs.503093 NM_006887 HPRD:18319 ZFP36L2 BRF2|ERF-2|ERF2|RNF162C|TIS11D ZFP36 ring finger protein-like 2 protein-coding 13-PTNLD9-TUMOR_peak_34947 chr3 72021172 72021475 + 22.68376 NA Intergenic Intergenic 128283 NR_104116 285286 Hs.559386 NR_104116 LINC00877 - long intergenic non-protein coding RNA 877 ncRNA 13-PTNLD9-TUMOR_peak_16256 chr14 74769612 74769814 + 22.68376 NA promoter-TSS (NM_005050) promoter-TSS (NM_005050) 54 NR_003256 5826 Hs.94395 NM_005050 HPRD:04446 ABCD4 ABC41|EST352188|MAHCJ|P70R|P79R|PMP69|PXMP1L ATP-binding cassette, sub-family D (ALD), member 4 protein-coding 13-PTNLD9-TUMOR_peak_28231 chr2 119998312 119998468 + 22.68376 NA intron (NM_018234, intron 2 of 5) intron (NM_018234, intron 2 of 5) 17006 NM_018234 55240 Hs.647822 NM_018234 HPRD:10285 STEAP3 AHMIO2|STMP3|TSAP6|dudlin-2 STEAP family member 3, metalloreductase protein-coding 13-PTNLD9-TUMOR_peak_10044 chr11 61899821 61899960 + 22.68376 NA intron (NM_001040694, intron 4 of 18) intron (NM_001040694, intron 4 of 18) 8445 NM_020238 3619 Hs.142179 NM_020238 HPRD:05103 INCENP - inner centromere protein antigens 135/155kDa protein-coding 13-PTNLD9-TUMOR_peak_40668 chr5 38872344 38872644 + 22.68376 NA intron (NM_003999, intron 2 of 17) L2c|LINE|L2 26393 NM_003999 9180 Hs.120658 NM_003999 HPRD:03446 OSMR OSMRB|PLCA1 oncostatin M receptor protein-coding 13-PTNLD9-TUMOR_peak_31482 chr20 49875130 49875364 + 22.68376 NA Intergenic MLT1K|LTR|ERVL-MaLR 194267 NR_036162 100422889 NR_036162 MIR3194 - microRNA 3194 ncRNA 13-PTNLD9-TUMOR_peak_43605 chr6 5082782 5083201 + 22.66313 NA Intergenic L2|LINE|L2 -2729 NM_001145115 648791 Hs.653089 NM_001145115 ENSG00000219607 PPP1R3G - protein phosphatase 1, regulatory subunit 3G protein-coding 13-PTNLD9-TUMOR_peak_51488 chr8 103801144 103801598 + 22.65809 NA Intergenic Intergenic 75026 NM_148174 51582 Hs.459106 NM_015878 HPRD:07443 AZIN1 OAZI|OAZIN|ODC1L antizyme inhibitor 1 protein-coding 13-PTNLD9-TUMOR_peak_22867 chr18 29070516 29070659 + 22.63946 NA Intergenic L2c|LINE|L2 -7440 NM_001943 1829 Hs.412597 NM_001943 HPRD:00516 DSG2 ARVC10|ARVD10|CDHF5|CMD1BB|HDGC desmoglein 2 protein-coding 13-PTNLD9-TUMOR_peak_26301 chr2 23747171 23747482 + 22.63789 NA intron (NM_052920, intron 2 of 13) intron (NM_052920, intron 2 of 13) 139028 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch-like family member 29 protein-coding 13-PTNLD9-TUMOR_peak_32493 chr21 44914521 44914721 + 22.63789 NA Intergenic Intergenic -16518 NR_026863 114038 Hs.592161 NM_153752 HPRD:10770 LINC00313 C21orf84|NCRNA00313 long intergenic non-protein coding RNA 313 ncRNA 13-PTNLD9-TUMOR_peak_28327 chr2 122857981 122858198 + 22.62649 NA Intergenic Intergenic 344968 NR_048557 7247 Hs.75066 NM_004622 HPRD:08993 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 13-PTNLD9-TUMOR_peak_54490 chr9 115915077 115915348 + 22.61532 NA intron (NM_001860, intron 1 of 3) intron (NM_001860, intron 1 of 3) 1974 NM_001860 1318 Hs.24030 NM_001860 HPRD:04365 SLC31A2 COPT2|CTR2|hCTR2 solute carrier family 31 (copper transporter), member 2 protein-coding 13-PTNLD9-TUMOR_peak_5261 chr1 206493663 206493875 + 22.61275 NA Intergenic Intergenic -22431 NM_001271870 647135 Hs.497575 NM_001271870 SRGAP2B SRGAP2L|SRGAP2P2 SLIT-ROBO Rho GTPase activating protein 2B protein-coding 13-PTNLD9-TUMOR_peak_7472 chr10 62144577 62144804 + 22.60455 NA intron (NM_001204403, intron 2 of 43) L2a|LINE|L2 4944 NM_020987 288 Hs.499725 NM_001149 HPRD:02715 ANK3 ANKYRIN-G|MRT37 ankyrin 3, node of Ranvier (ankyrin G) protein-coding 13-PTNLD9-TUMOR_peak_45246 chr6 47647864 47648156 + 22.60455 NA exon (NM_153839, exon 6 of 11) exon (NM_153839, exon 6 of 11) -18279 NM_153838 221393 Hs.150131 NM_153838 HPRD:17057 GPR115 PGR18 G protein-coupled receptor 115 protein-coding 13-PTNLD9-TUMOR_peak_39177 chr4 119910275 119910934 + 22.59547 NA intron (NM_001128934, intron 1 of 4) intron (NM_001128934, intron 1 of 4) 100608 NM_001128933 171024 Hs.655519 NM_133477 HPRD:15456 SYNPO2 - synaptopodin 2 protein-coding 13-PTNLD9-TUMOR_peak_44139 chr6 24743581 24743792 + 22.57658 NA Intergenic MLT1L|LTR|ERVL-MaLR -24283 NM_030939 81688 Hs.744857 NM_030939 C6orf62 Nbla00237|XTP12|dJ30M3.2 chromosome 6 open reading frame 62 protein-coding 13-PTNLD9-TUMOR_peak_24184 chr19 14545917 14546203 + 22.57586 NA intron (NM_002741, intron 1 of 21) intron (NM_002741, intron 1 of 21) 1894 NM_002741 5585 Hs.466044 NM_002741 HPRD:03019 PKN1 DBK|PAK-1|PAK1|PKN|PKN-ALPHA|PRK1|PRKCL1 protein kinase N1 protein-coding 13-PTNLD9-TUMOR_peak_49624 chr7 150283865 150284168 + 22.57432 NA Intergenic Intergenic 19558 NM_018326 55303 Hs.647101 NM_018326 HPRD:16281 GIMAP4 IAN-1|IAN1|IMAP4 GTPase, IMAP family member 4 protein-coding 13-PTNLD9-TUMOR_peak_47790 chr7 68357345 68357547 + 22.57032 NA Intergenic Intergenic 705035 NR_108105 100507468 Hs.362492 NR_108105 LOC100507468 - uncharacterized LOC100507468 ncRNA 13-PTNLD9-TUMOR_peak_708 chr1 24592918 24593394 + 22.57032 NA Intergenic Intergenic -52656 NM_198173 57822 Hs.657920 NM_021180 HPRD:12210 GRHL3 SOM|TFCP2L4|VWS2 grainyhead-like 3 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_48611 chr7 101526171 101526560 + 22.56637 NA intron (NM_181552, intron 1 of 23) intron (NM_181552, intron 1 of 23) 65483 NM_181552 1523 Hs.191482 NM_001913 HPRD:00295 CUX1 CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GOLIM6|Nbla10317|p100|p110|p200|p75 cut-like homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_45678 chr6 88432923 88433196 + 22.55416 NA Intergenic MLT1M|LTR|ERVL-MaLR -21074 NM_018064 55122 Hs.485915 NM_018064 HPRD:12864 AKIRIN2 C6orf166|FBI1|dJ486L4.2 akirin 2 protein-coding 13-PTNLD9-TUMOR_peak_38770 chr4 84539698 84539915 + 22.55416 NA Intergenic Intergenic 82336 NM_032717 84803 Hs.99196 NM_032717 HPRD:14417 AGPAT9 AGPAT 10|AGPAT8|GPAT3|LPAAT-theta|MAG1 1-acylglycerol-3-phosphate O-acyltransferase 9 protein-coding 13-PTNLD9-TUMOR_peak_4895 chr1 200119792 200120159 + 22.55416 NA intron (NM_205860, intron 7 of 7) intron (NM_205860, intron 7 of 7) 108022 NM_001276464 2494 Hs.33446 NM_003822 HPRD:06830 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5, group A, member 2 protein-coding 13-PTNLD9-TUMOR_peak_48138 chr7 79976080 79976363 + 22.55416 NA Intergenic Intergenic 27534 NR_110075 101927269 Hs.583232 NR_110075 LOC101927269 - uncharacterized LOC101927269 ncRNA 13-PTNLD9-TUMOR_peak_24869 chr19 38482466 38482821 + 22.55416 NA intron (NM_015073, intron 1 of 21) MIRb|SINE|MIR 84782 NM_015073 23094 Hs.655502 NM_015073 HPRD:18755 SIPA1L3 SPAL3 signal-induced proliferation-associated 1 like 3 protein-coding 13-PTNLD9-TUMOR_peak_5748 chr1 229038887 229039123 + 22.55416 NA Intergenic Intergenic 168181 NM_021205 58480 Hs.647774 NM_021205 HPRD:06965 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 13-PTNLD9-TUMOR_peak_22410 chr18 702915 703187 + 22.55416 NA intron (NM_202758, intron 2 of 14) intron (NM_202758, intron 2 of 14) 9466 NM_202758 55556 Hs.658550 NM_017512 ENSG00000132199 ENOSF1 HSRTSBETA|RTS|TYMSAS enolase superfamily member 1 protein-coding 13-PTNLD9-TUMOR_peak_24917 chr19 39282155 39282452 + 22.54405 NA TTS (NM_001042507) TTS (NM_001042507) 2453 NM_001042507 653499 Hs.558355 NM_001042507 ENSG00000178934 LGALS7B GAL7|Gal-7|HKL-14|LGALS7|PI7 lectin, galactoside-binding, soluble, 7B protein-coding 13-PTNLD9-TUMOR_peak_26630 chr2 38648454 38648861 + 22.54405 NA Intergenic THE1C|LTR|ERVL-MaLR -44225 NR_024191 64225 Hs.727652 NM_022374 HPRD:10662 ATL2 ARL3IP2|ARL6IP2|atlastin2 atlastin GTPase 2 protein-coding 13-PTNLD9-TUMOR_peak_37308 chr3 194033290 194033682 + 22.54352 NA Intergenic CpG -2893 NR_024480 100131551 Hs.128066 NR_024480 ENSG00000214145 LINC00887 - long intergenic non-protein coding RNA 887 ncRNA 13-PTNLD9-TUMOR_peak_44501 chr6 30975585 30975822 + 22.53009 NA intron (NM_001198815, intron 1 of 4).6 intron (NM_001198815, intron 1 of 4).6 1974 NM_001198815 100507679 Hs.582967 NM_001198815 ENSG00000261272 MUC22 PBMUCL1 mucin 22 protein-coding 13-PTNLD9-TUMOR_peak_8559 chr10 126734434 126734623 + 22.52594 NA intron (NM_001290214, intron 2 of 10) intron (NM_001290214, intron 2 of 10) -13089 NR_036178 100423041 NR_036178 MIR4296 - microRNA 4296 ncRNA 13-PTNLD9-TUMOR_peak_6318 chr10 3782606 3783005 + 22.52594 NA Intergenic MIR|SINE|MIR 44668 NM_001300 1316 Hs.4055 NM_001300 HPRD:03632 KLF6 BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9 Kruppel-like factor 6 protein-coding 13-PTNLD9-TUMOR_peak_13659 chr12 105066335 105066752 + 22.51734 NA intron (NM_018413, intron 2 of 2) intron (NM_018413, intron 2 of 2) 81132 NR_037487 100500843 NR_037487 MIR3922 - microRNA 3922 ncRNA 13-PTNLD9-TUMOR_peak_7282 chr10 48332173 48332589 + 22.51734 NA Intergenic Intergenic -22708 NM_153034 118738 Hs.27788 NM_153034 HPRD:15801 ZNF488 - zinc finger protein 488 protein-coding 13-PTNLD9-TUMOR_peak_3787 chr1 154456743 154457191 + 22.51734 NA intron (NM_001010846, intron 5 of 5) intron (NM_001010846, intron 5 of 5) 17559 NM_001010846 126669 Hs.591481 NM_001010846 HPRD:17293 SHE - Src homology 2 domain containing E protein-coding 13-PTNLD9-TUMOR_peak_10466 chr11 69795563 69795828 + 22.51598 NA Intergenic Intergenic 114335 NR_120530 101928443 Hs.313468 NR_120529 ENSG00000248844 LOC101928443 - uncharacterized LOC101928443 ncRNA 13-PTNLD9-TUMOR_peak_1764 chr1 52024018 52024564 + 22.50405 NA Intergenic LTR8|LTR|ERV1 -39296 NM_001981 2060 Hs.83722 NM_001981 HPRD:08968 EPS15 AF-1P|AF1P|MLLT5 epidermal growth factor receptor pathway substrate 15 protein-coding 13-PTNLD9-TUMOR_peak_14385 chr13 20749096 20749340 + 22.50405 NA Intergenic Intergenic -14035 NM_021954 2700 Hs.130313 NM_021954 HPRD:00415 GJA3 CTRCT14|CX46|CZP3 gap junction protein, alpha 3, 46kDa protein-coding 13-PTNLD9-TUMOR_peak_6952 chr10 36111331 36111598 + 22.48500 NA Intergenic MLT1F|LTR|ERVL-MaLR 44234 NR_110138 102578074 NR_110138 LINC01452 PCAT5|TPCAT-10-36067 long intergenic non-protein coding RNA 1452 ncRNA 13-PTNLD9-TUMOR_peak_19881 chr16 81439349 81439739 + 22.48448 NA Intergenic Intergenic 20921 NR_039871 100616150 NR_039871 miRBase:MI0017355 MIR4720 - microRNA 4720 ncRNA 13-PTNLD9-TUMOR_peak_42657 chr5 150153770 150153957 + 22.48240 NA Intergenic Intergenic -3645 NM_032947 85027 Hs.29444 NM_032947 HPRD:12212 SMIM3 C5orf62|MST150|NID67 small integral membrane protein 3 protein-coding 13-PTNLD9-TUMOR_peak_50575 chr8 33172533 33172835 + 22.48240 NA Intergenic Intergenic 157980 NM_032664 84750 Hs.458713 NM_032664 ENSG00000172728 FUT10 - fucosyltransferase 10 (alpha (1,3) fucosyltransferase) protein-coding 13-PTNLD9-TUMOR_peak_43552 chr6 3803906 3804381 + 22.48240 NA Intergenic MARNA|DNA|TcMar-Mariner -45489 NM_012135 26240 Hs.140944 NM_012135 HPRD:16883 FAM50B D6S2654E|X5L family with sequence similarity 50, member B protein-coding 13-PTNLD9-TUMOR_peak_49215 chr7 134889734 134889954 + 22.46434 NA intron (NM_014149, intron 5 of 14) intron (NM_014149, intron 5 of 14) 1986 NR_106764 102465254 NR_106764 MIR6509 hsa-mir-6509 microRNA 6509 ncRNA 13-PTNLD9-TUMOR_peak_13137 chr12 64311752 64312362 + 22.46434 NA intron (NM_020762, intron 1 of 21) MIR|SINE|MIR 73516 NM_020762 57522 Hs.210751 NM_020762 HPRD:09406 SRGAP1 ARHGAP13 SLIT-ROBO Rho GTPase activating protein 1 protein-coding 13-PTNLD9-TUMOR_peak_51740 chr8 120217382 120217602 + 22.46434 NA Intergenic L2c|LINE|L2 -3118 NM_052886 114569 Hs.201083 NM_052886 HPRD:14351 MAL2 - mal, T-cell differentiation protein 2 (gene/pseudogene) protein-coding 13-PTNLD9-TUMOR_peak_4351 chr1 169082866 169083157 + 22.45404 NA intron (NM_001677, intron 2 of 5) intron (NM_001677, intron 2 of 5) 7064 NM_001677 481 Hs.291196 NM_001677 HPRD:01663 ATP1B1 ATP1B ATPase, Na+/K+ transporting, beta 1 polypeptide protein-coding 13-PTNLD9-TUMOR_peak_36748 chr3 172323801 172324166 + 22.45404 NA Intergenic Intergenic -82686 NM_001190942 8743 Hs.478275 NM_003810 HPRD:04670 TNFSF10 APO2L|Apo-2L|CD253|TL2|TRAIL tumor necrosis factor (ligand) superfamily, member 10 protein-coding 13-PTNLD9-TUMOR_peak_45067 chr6 43088831 43089053 + 22.44828 NA intron (NM_001270398, intron 1 of 19) intron (NM_001270398, intron 1 of 19) 44390 NM_001270398 5754 Hs.90572 NM_002821 HPRD:03534 PTK7 CCK-4|CCK4 protein tyrosine kinase 7 protein-coding 13-PTNLD9-TUMOR_peak_25919 chr2 524462 524766 + 22.44828 NA Intergenic Intergenic 152825 NM_152834 129787 Hs.43899 NM_152834 TMEM18 - transmembrane protein 18 protein-coding 13-PTNLD9-TUMOR_peak_48948 chr7 127616037 127616311 + 22.44828 NA intron (NM_014390, intron 15 of 23) intron (NM_014390, intron 15 of 23) -21388 NR_027330 27099 Hs.657377 NM_014411 SND1-IT1 C7orf54|NAG8|NSG-X SND1 intronic transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_39554 chr4 146655796 146656106 + 22.44077 NA Intergenic Intergenic 54595 NM_001080531 646603 Hs.452865 NM_001080531 ENSG00000237136 C4orf51 - chromosome 4 open reading frame 51 protein-coding 13-PTNLD9-TUMOR_peak_31375 chr20 48221103 48221318 + 22.43793 NA Intergenic L2b|LINE|L2 -36503 NM_000961 5740 Hs.302085 NM_000961 HPRD:09046 PTGIS CYP8|CYP8A1|PGIS|PTGI prostaglandin I2 (prostacyclin) synthase protein-coding 13-PTNLD9-TUMOR_peak_4283 chr1 166879736 166879936 + 22.43793 NA Intergenic Intergenic -34182 NM_053053 117143 Hs.435967 NM_053053 HPRD:18114 TADA1 ADA1|HFI1|STAF42|TADA1L|hADA1 transcriptional adaptor 1 protein-coding 13-PTNLD9-TUMOR_peak_41763 chr5 112498578 112498768 + 22.41042 NA intron (NM_001085377, intron 3 of 18) intron (NM_001085377, intron 3 of 18) 131939 NM_002387 4163 Hs.593171 NM_002387 HPRD:01157 MCC MCC1 mutated in colorectal cancers protein-coding 13-PTNLD9-TUMOR_peak_16234 chr14 74012146 74012331 + 22.41042 NA intron (NM_001220484, intron 1 of 17) intron (NM_001220484, intron 1 of 17) 8310 NM_001037161 641371 Hs.446685 NM_001037161 ENSG00000184227 ACOT1 ACH2|CTE-1|LACH2 acyl-CoA thioesterase 1 protein-coding 13-PTNLD9-TUMOR_peak_48359 chr7 95121310 95121550 + 22.41042 NA intron (NM_016116, intron 1 of 4) intron (NM_016116, intron 1 of 4) 6217 NM_145872 51666 Hs.602765 NM_016116 HPRD:05770 ASB4 ASB-4 ankyrin repeat and SOCS box containing 4 protein-coding 13-PTNLD9-TUMOR_peak_36401 chr3 150755615 150755836 + 22.40049 NA intron (NR_024066, intron 1 of 5) intron (NR_024066, intron 1 of 5) -48951 NM_053002 116931 Hs.744234 NM_053002 HPRD:10278 MED12L NOPAR|TNRC11L|TRALP|TRALPUSH mediator complex subunit 12-like protein-coding 13-PTNLD9-TUMOR_peak_33609 chr3 5236519 5236707 + 22.40049 NA intron (NM_014674, intron 1 of 11) intron (NM_014674, intron 1 of 11) 7254 NM_014674 9695 Hs.224616 NM_014674 HPRD:09644 EDEM1 EDEM ER degradation enhancer, mannosidase alpha-like 1 protein-coding 13-PTNLD9-TUMOR_peak_53884 chr9 90209254 90209481 + 22.40049 NA intron (NM_001288729, intron 2 of 25) intron (NM_001288729, intron 2 of 25) 95917 NM_001288729 1612 Hs.380277 NM_004938 HPRD:02902 DAPK1 DAPK death-associated protein kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_36958 chr3 183863087 183863271 + 22.40049 NA TTS (NM_003907) TTS (NM_003907) -10105 NM_004423 1857 Hs.388116 NM_004423 HPRD:03222 DVL3 - dishevelled segment polarity protein 3 protein-coding 13-PTNLD9-TUMOR_peak_25257 chr19 48136933 48137096 + 22.40049 NA intron (NM_015711, intron 1 of 14) intron (NM_015711, intron 1 of 14) 25561 NM_015711 29998 Hs.97244 NM_015711 HPRD:09296 GLTSCR1 - glioma tumor suppressor candidate region gene 1 protein-coding 13-PTNLD9-TUMOR_peak_31326 chr20 47154696 47154896 + 22.39160 NA Intergenic Intergenic 166142 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 13-PTNLD9-TUMOR_peak_52345 chr8 142249488 142249976 + 22.39160 NA intron (NM_001286646, intron 1 of 7) intron (NM_001286646, intron 1 of 7) -11059 NM_001286648 57210 Hs.372492 NM_001080431 ENSG00000022567 SLC45A4 - solute carrier family 45, member 4 protein-coding 13-PTNLD9-TUMOR_peak_49434 chr7 142172026 142172360 + 22.38661 NA Intergenic Intergenic -200125 NR_036483 207147 Hs.604069 NR_036483 TRY2P - trypsinogen-like pseudogene pseudo 13-PTNLD9-TUMOR_peak_1932 chr1 58994290 58994462 + 22.38159 NA intron (NM_145243, intron 6 of 8) MIRb|SINE|MIR 18070 NM_145243 115209 Hs.425769 NM_145243 HPRD:14879 OMA1 2010001O09Rik|DAB1|MPRP-1|YKR087C|ZMPOMA1|peptidase OMA1 zinc metallopeptidase protein-coding 13-PTNLD9-TUMOR_peak_42400 chr5 141404483 141404770 + 22.38159 NA Intergenic Intergenic -12006 NM_005471 10007 Hs.633853 NM_005471 HPRD:09048 GNPDA1 GNP1|GNPDA|GNPI|GPI|HLN glucosamine-6-phosphate deaminase 1 protein-coding 13-PTNLD9-TUMOR_peak_46115 chr6 136931443 136931696 + 22.38159 NA intron (NM_005923, intron 18 of 29) intron (NM_005923, intron 18 of 29) -59612 NM_003980 9053 Hs.486548 NM_003980 HPRD:04982 MAP7 E-MAP-115|EMAP115 microtubule-associated protein 7 protein-coding 13-PTNLD9-TUMOR_peak_22433 chr18 2027158 2027309 + 22.38159 NA Intergenic Intergenic 544256 NM_022840 64863 Hs.126888 NM_022840 HPRD:14390 METTL4 HsT661 methyltransferase like 4 protein-coding 13-PTNLD9-TUMOR_peak_6402 chr10 6543989 6544211 + 22.38159 NA intron (NM_001282645, intron 3 of 16) intron (NM_001282645, intron 3 of 16) 78163 NM_001282644 5588 Hs.498570 NM_006257 HPRD:02710 PRKCQ PRKCT|nPKC-theta protein kinase C, theta protein-coding 13-PTNLD9-TUMOR_peak_27559 chr2 89392513 89392718 + 22.38159 NA Intergenic MER70A|LTR|ERVL 280731 NR_039635 100616399 NR_039635 miRBase:MI0016776 MIR4436A - microRNA 4436a ncRNA 13-PTNLD9-TUMOR_peak_18335 chr16 3921272 3921494 + 22.38159 NA intron (NM_004380, intron 1 of 30) intron (NM_004380, intron 1 of 30) 8738 NM_001079846 1387 Hs.459759 NM_004380 HPRD:02534 CREBBP CBP|KAT3A|RSTS CREB binding protein protein-coding 13-PTNLD9-TUMOR_peak_52117 chr8 132672995 132673423 + 22.38159 NA Intergenic Intergenic -243147 NM_015137 23167 Hs.204564 NM_015137 HPRD:17179 EFR3A - EFR3 homolog A (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_56598 chrX 149651167 149651356 + 22.38159 NA intron (NM_001177466, intron 3 of 5) intron (NM_001177466, intron 3 of 5) 37541 NM_005491 10046 Hs.20136 NM_005491 HPRD:02126 MAMLD1 CG1|CXorf6|F18|HYSP2 mastermind-like domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_46310 chr6 151203378 151203539 + 22.38159 NA intron (NM_001242769, intron 4 of 7) intron (NM_001242769, intron 4 of 7) 15989 NM_001242768 25902 Hs.591343 NM_015440 HPRD:09967 MTHFD1L FTHFSDC1|MTC1THFS|dJ292B18.2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like protein-coding 13-PTNLD9-TUMOR_peak_38667 chr4 78905691 78905879 + 22.38159 NA Intergenic SVA_D|Other|Other -72939 NM_025074 80144 Hs.369448 NM_020875 HPRD:06382 FRAS1 - Fraser extracellular matrix complex subunit 1 protein-coding 13-PTNLD9-TUMOR_peak_26424 chr2 28155373 28155591 + 22.38159 NA intron (NM_199193, intron 4 of 13) intron (NM_199193, intron 4 of 13) -41501 NR_028308 100302650 Hs.729719 NR_028308 BRE-AS1 - BRE antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_16355 chr14 78720416 78720603 + 22.38159 NA intron (NR_073547, intron 2 of 20) intron (NR_073547, intron 2 of 20) 83793 NR_073547 9369 Hs.368307 NM_004796 NRXN3 C14orf60 neurexin 3 protein-coding 13-PTNLD9-TUMOR_peak_5343 chr1 210827227 210827538 + 22.38159 NA intron (NM_018194, intron 11 of 11) intron (NM_018194, intron 11 of 11) 324742 NM_001170580 55733 Hs.58650 NM_018194 HPRD:12041 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 13-PTNLD9-TUMOR_peak_9176 chr11 15145457 15145714 + 22.38159 NA intron (NM_001042536, intron 1 of 12) (CTCA)n|Simple_repeat|Simple_repeat 9101 NM_001042536 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - inscuteable homolog (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_41279 chr5 73622933 73623091 + 22.38159 NA intron (NR_105010, intron 2 of 2) intron (NR_105010, intron 2 of 2) 4701 NR_105010 101929082 Hs.434316 NR_105010 ENSG00000249343 LINC01333 - long intergenic non-protein coding RNA 1333 ncRNA 13-PTNLD9-TUMOR_peak_45377 chr6 56548822 56548997 + 22.38159 NA intron (NM_183380, intron 5 of 93) intron (NM_183380, intron 5 of 93) -41215 NM_001723 667 Hs.604915 NM_001723 HPRD:00222 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 13-PTNLD9-TUMOR_peak_37436 chr3 196377750 196378125 + 22.37276 NA intron (NM_198565, intron 1 of 2) intron (NM_198565, intron 1 of 2) 11281 NM_198565 375387 Hs.702186 NM_198565 HPRD:17452 NRROS GARPL1|LRRC33|UNQ3030 negative regulator of reactive oxygen species protein-coding 13-PTNLD9-TUMOR_peak_17438 chr15 64648333 64648600 + 22.37276 NA promoter-TSS (NM_022048) promoter-TSS (NM_022048) -24 NM_022048 53944 Hs.646508 NM_022048 ENSG00000169118 CSNK1G1 CK1gamma1 casein kinase 1, gamma 1 protein-coding 13-PTNLD9-TUMOR_peak_48569 chr7 100765223 100765482 + 22.36448 NA Intergenic Intergenic -5018 NM_000602 5054 Hs.414795 NM_000602 HPRD:01418 SERPINE1 PAI|PAI-1|PAI1|PLANH1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 protein-coding 13-PTNLD9-TUMOR_peak_10202 chr11 64951099 64951316 + 22.35950 NA intron (NR_040008, intron 3 of 20) intron (NR_040008, intron 3 of 20) 1903 NM_005186 823 Hs.502842 NM_005186 HPRD:00253 CAPN1 CANP|CANP1|CANPL1|muCANP|muCL calpain 1, (mu/I) large subunit protein-coding 13-PTNLD9-TUMOR_peak_30762 chr20 30743009 30743444 + 22.34758 NA intron (NM_014742, intron 13 of 17) intron (NM_014742, intron 13 of 17) 34937 NR_002781 128854 Hs.647447 NR_002781 HPRD:18235 TSPY26P TSPYL3|bA392M18.1 testis specific protein, Y-linked 26, pseudogene pseudo 13-PTNLD9-TUMOR_peak_49729 chr7 152885718 152886018 + 22.34160 NA Intergenic L2b|LINE|L2 223451 NR_125776 103724390 Hs.614280 NR_125776 LINC01287 TCONS_l2_00027522 long intergenic non-protein coding RNA 1287 ncRNA 13-PTNLD9-TUMOR_peak_29382 chr2 192084131 192084605 + 22.34148 NA Intergenic L2b|LINE|L2 -25739 NM_001130158 4430 Hs.439620 NM_012223 HPRD:08407 MYO1B myr1 myosin IB protein-coding 13-PTNLD9-TUMOR_peak_29951 chr2 228175540 228175732 + 22.31856 NA exon (NM_000091, exon 51 of 52) exon (NM_000091, exon 51 of 52) -14231 NR_102266 56947 Hs.471528 NM_020194 HPRD:16653 MFF C2orf33|GL004 mitochondrial fission factor protein-coding 13-PTNLD9-TUMOR_peak_52099 chr8 131704460 131704698 + 22.31856 NA Intergenic L1P4d|LINE|L1 -248673 NM_018482 50807 Hs.655552 NM_018482 HPRD:05809 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 13-PTNLD9-TUMOR_peak_50493 chr8 29316624 29316896 + 22.31856 NA Intergenic Intergenic -108493 NM_001394 1846 Hs.417962 NM_001394 HPRD:04123 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 13-PTNLD9-TUMOR_peak_11354 chr11 117817596 117817858 + 22.31856 NA Intergenic Intergenic -17559 NM_001077263 84000 Hs.266308 NM_032046 HPRD:07493 TMPRSS13 MSP|MSPL|MSPS|TMPRSS11 transmembrane protease, serine 13 protein-coding 13-PTNLD9-TUMOR_peak_4394 chr1 171786746 171787128 + 22.30723 NA Intergenic Intergenic -23681 NM_001278252 26052 Hs.654775 NM_015569 HPRD:13241 DNM3 Dyna III dynamin 3 protein-coding 13-PTNLD9-TUMOR_peak_51486 chr8 103780126 103780680 + 22.30418 NA Intergenic Intergenic 95994 NM_148174 51582 Hs.459106 NM_015878 HPRD:07443 AZIN1 OAZI|OAZIN|ODC1L antizyme inhibitor 1 protein-coding 13-PTNLD9-TUMOR_peak_3977 chr1 156866448 156866776 + 22.29915 NA intron (NM_001080471, intron 1 of 22) intron (NM_001080471, intron 1 of 22) 3089 NM_001080471 375033 Hs.142003 NM_207369 ENSG00000187800 PEAR1 JEDI|MEGF12 platelet endothelial aggregation receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_28529 chr2 134391535 134391807 + 22.29597 NA Intergenic Intergenic -65640 NM_207363 344148 Hs.537329 NM_207363 HPRD:16936 NCKAP5 ERIH1|ERIH2|NAP5 NCK-associated protein 5 protein-coding 13-PTNLD9-TUMOR_peak_44615 chr6 32223042 32223386 + 22.29597 NA Intergenic Intergenic -31370 NM_004557 4855 Hs.436100 NM_004557 HPRD:01290 NOTCH4 INT3 notch 4 protein-coding 13-PTNLD9-TUMOR_peak_7674 chr10 73053902 73054347 + 22.29135 NA intron (NM_001244889, intron 12 of 15) intron (NM_001244889, intron 12 of 15) -24886 NR_033414 55315 Hs.438419 NM_018344 HPRD:11570 SLC29A3 ENT3|HCLAP|HJCD|PHID solute carrier family 29 (equilibrative nucleoside transporter), member 3 protein-coding 13-PTNLD9-TUMOR_peak_27457 chr2 85999453 85999785 + 22.28798 NA intron (NM_032827, intron 2 of 2) intron (NM_032827, intron 2 of 2) 11181 NR_106719 102466516 NR_106719 MIR6071 hsa-mir-6071 microRNA 6071 ncRNA 13-PTNLD9-TUMOR_peak_15711 chr14 50505227 50505726 + 22.27934 NA intron (NR_102736, intron 3 of 5) intron (NR_102736, intron 3 of 5) 1126 NR_102736 100506499 Hs.728904 NR_102736 LOC100506499 - uncharacterized LOC100506499 ncRNA 13-PTNLD9-TUMOR_peak_3284 chr1 145186340 145186574 + 22.27763 NA intron (NM_001277444, intron 20 of 24) intron (NM_001277444, intron 20 of 24) -22656 NM_203458 388677 Hs.655156 NM_203458 HPRD:14833 NOTCH2NL N2N notch 2 N-terminal like protein-coding 13-PTNLD9-TUMOR_peak_54944 chr9 134298571 134298804 + 22.27071 NA Intergenic Intergenic -6790 NM_013318 84726 Hs.743955 NM_013318 ENSG00000130723 PRRC2B BAT2L|BAT2L1|KIAA0515|LQFBS-1 proline-rich coiled-coil 2B protein-coding 13-PTNLD9-TUMOR_peak_4223 chr1 164599916 164600233 + 22.27071 NA intron (NM_001204961, intron 2 of 7) intron (NM_001204961, intron 2 of 7) 71477 NM_002585 5087 Hs.557097 NM_002585 HPRD:08889 PBX1 - pre-B-cell leukemia homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_4975 chr1 201682584 201682873 + 22.27071 NA intron (NM_020443, intron 2 of 29) intron (NM_020443, intron 2 of 29) -5908 NR_049823 100847050 NR_049823 MIR5191 - microRNA 5191 ncRNA 13-PTNLD9-TUMOR_peak_51926 chr8 126656696 126657034 + 22.27071 NA Intergenic Intergenic 212414 NM_001282985 10221 Hs.444947 NM_025195 HPRD:09863 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 13-PTNLD9-TUMOR_peak_24270 chr19 16390115 16390313 + 22.24061 NA Intergenic Intergenic -45437 NM_016270 10365 Hs.744182 NM_016270 HPRD:03602 KLF2 LKLF Kruppel-like factor 2 protein-coding 13-PTNLD9-TUMOR_peak_40003 chr4 185736194 185736591 + 22.24061 NA intron (NM_001286711, intron 1 of 19) intron (NM_001286711, intron 1 of 19) -2979 NM_001286708 2180 Hs.406678 NM_001995 HPRD:01068 ACSL1 ACS1|FACL1|FACL2|LACS|LACS1|LACS2 acyl-CoA synthetase long-chain family member 1 protein-coding 13-PTNLD9-TUMOR_peak_6685 chr10 24207829 24208112 + 22.23625 NA intron (NM_001098500, intron 1 of 18) intron (NM_001098500, intron 1 of 18) 224295 NM_001098500 56243 Hs.445885 NM_019590 HPRD:11132 KIAA1217 SKT KIAA1217 protein-coding 13-PTNLD9-TUMOR_peak_40396 chr5 15008700 15008942 + 22.23158 NA Intergenic Intergenic -136934 NM_054027 56172 Hs.156727 NM_054027 HPRD:05509 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK ANKH inorganic pyrophosphate transport regulator protein-coding 13-PTNLD9-TUMOR_peak_991 chr1 32701697 32702097 + 22.23158 NA intron (NR_026850, intron 3 of 6) MER44D|DNA|TcMar-Tigger 5414 NR_026850 339483 Hs.471067 NR_026850 MTMR9LP MTMR9L myotubularin related protein 9-like, pseudogene pseudo 13-PTNLD9-TUMOR_peak_22230 chr17 78475699 78476105 + 22.21030 NA Intergenic Intergenic -25498 NM_002522 4884 Hs.514556 NM_002522 HPRD:03843 NPTX1 NP1 neuronal pentraxin I protein-coding 13-PTNLD9-TUMOR_peak_23022 chr18 42467176 42467562 + 22.20066 NA intron (NM_015559, intron 3 of 5) intron (NM_015559, intron 3 of 5) 82762 NR_036203 100422829 NR_036203 miRBase:MI0015848 MIR4319 - microRNA 4319 ncRNA 13-PTNLD9-TUMOR_peak_29955 chr2 228279703 228279914 + 22.20066 NA Intergenic MER58B|DNA|hAT-Charlie -35786 NM_024795 79853 Hs.156652 NM_024795 HPRD:08008 TM4SF20 PRO994|SLI5|TCCE518 transmembrane 4 L six family member 20 protein-coding 13-PTNLD9-TUMOR_peak_21581 chr17 55635174 55635382 + 22.20066 NA intron (NM_138962, intron 7 of 13) intron (NM_138962, intron 7 of 13) -34320 NR_110808 101927557 Hs.639984 NR_110808 ENSG00000266100 LOC101927557 - uncharacterized LOC101927557 ncRNA 13-PTNLD9-TUMOR_peak_33726 chr3 10233800 10234127 + 22.19646 NA intron (NM_001570, intron 2 of 12) intron (NM_001570, intron 2 of 12) 27400 NM_001570 3656 Hs.449207 NM_001570 HPRD:04491 IRAK2 IRAK-2 interleukin-1 receptor-associated kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_9748 chr11 47968523 47969148 + 22.17474 NA Intergenic Intergenic -33275 NM_001098503 5795 Hs.318547 NM_002843 HPRD:02955 PTPRJ CD148|DEP1|HPTPeta|R-PTP-ETA|SCC1 protein tyrosine phosphatase, receptor type, J protein-coding 13-PTNLD9-TUMOR_peak_50377 chr8 25052954 25053220 + 22.17474 NA intron (NM_024940, intron 1 of 51) L2b|LINE|L2 10800 NM_024940 80005 Hs.195403 NM_024940 HPRD:09925 DOCK5 - dedicator of cytokinesis 5 protein-coding 13-PTNLD9-TUMOR_peak_23739 chr19 4988828 4989170 + 22.15801 NA intron (NM_015015, intron 1 of 22) MER21B|LTR|ERVL 19875 NM_015015 23030 Hs.654816 NM_015015 HPRD:11056 KDM4B JMJD2B|TDRD14B lysine (K)-specific demethylase 4B protein-coding 13-PTNLD9-TUMOR_peak_8565 chr10 126920107 126920382 + 22.15801 NA Intergenic Intergenic -70620 NM_001083914 1488 Hs.501345 NM_001329 HPRD:04016 CTBP2 - C-terminal binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_52005 chr8 128981708 128981888 + 22.15801 NA intron (NR_003367, intron 2 of 7) intron (NR_003367, intron 2 of 7) 8919 NR_031610 100302161 NR_031610 miRBase:MI0006338 MIR1205 MIRN1205|hsa-mir-1205 microRNA 1205 ncRNA 13-PTNLD9-TUMOR_peak_35589 chr3 123324110 123324294 + 22.15361 NA intron (NR_121654, intron 2 of 3) Tigger13a|DNA|TcMar-Tigger 15328 NM_053031 4638 Hs.477375 NM_005965 HPRD:02952 MYLK AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK myosin light chain kinase protein-coding 13-PTNLD9-TUMOR_peak_2713 chr1 108479234 108479571 + 22.15361 NA intron (NM_006113, intron 1 of 26) intron (NM_006113, intron 1 of 26) -27663 NR_046653 100873946 Hs.568676 NR_046653 ENSG00000230489 VAV3-AS1 - VAV3 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_11437 chr11 121260386 121260558 + 22.15361 NA Intergenic Intergenic -62440 NM_003105 6653 Hs.368592 NM_003105 HPRD:03595 SORL1 C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250 sortilin-related receptor, L(DLR class) A repeats containing protein-coding 13-PTNLD9-TUMOR_peak_53949 chr9 92704221 92704495 + 22.14983 NA Intergenic MIRc|SINE|MIR -27340 NR_109791 101927847 Hs.584312 NR_109791 LOC101927847 - uncharacterized LOC101927847 ncRNA 13-PTNLD9-TUMOR_peak_10572 chr11 72905758 72906073 + 22.14673 NA Intergenic Intergenic -23428 NM_176072 5029 Hs.339 NM_002564 HPRD:02499 P2RY2 HP2U|P2RU1|P2U|P2U1|P2UR|P2Y2|P2Y2R purinergic receptor P2Y, G-protein coupled, 2 protein-coding 13-PTNLD9-TUMOR_peak_22725 chr18 19612397 19612619 + 22.14490 NA Intergenic Intergenic 136421 NR_102763 100128893 Hs.514745 NR_102763 ENSG00000266010 GATA6-AS1 locus5689 GATA6 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_45110 chr6 43818921 43819157 + 22.14490 NA Intergenic Intergenic -39726 NR_024478 100132354 Hs.376232 NR_024478 LINC01512 - long intergenic non-protein coding RNA 1512 ncRNA 13-PTNLD9-TUMOR_peak_10859 chr11 87148935 87149200 + 22.14490 NA Intergenic MIR3|SINE|MIR 400181 NR_033149 65084 Hs.188591 NM_022918 TMEM135 PMP52 transmembrane protein 135 protein-coding 13-PTNLD9-TUMOR_peak_42034 chr5 131781007 131781485 + 22.14149 NA intron (NR_045116, intron 2 of 3) MIRb|SINE|MIR 34781 NR_045116 441108 Hs.658288 NM_001013717 HPRD:18460 C5orf56 - chromosome 5 open reading frame 56 ncRNA 13-PTNLD9-TUMOR_peak_18047 chr15 98546746 98547073 + 22.13807 NA Intergenic L2b|LINE|L2 42976 NM_183376 91947 Hs.6093 NM_183376 HPRD:10664 ARRDC4 - arrestin domain containing 4 protein-coding 13-PTNLD9-TUMOR_peak_35508 chr3 119872084 119872580 + 22.13546 NA Intergenic MER126|DNA|DNA -59068 NM_002093 2932 Hs.445733 NM_002093 HPRD:05418 GSK3B - glycogen synthase kinase 3 beta protein-coding 13-PTNLD9-TUMOR_peak_6384 chr10 5993067 5993410 + 22.13546 NA Intergenic AluSx|SINE|Alu 26336 NM_002189 3601 Hs.445124 NM_002189 HPRD:03045 IL15RA CD215 interleukin 15 receptor, alpha protein-coding 13-PTNLD9-TUMOR_peak_38703 chr4 81375292 81375500 + 22.13179 NA intron (NM_152770, intron 2 of 5) intron (NM_152770, intron 2 of 5) 118522 NM_152770 255119 Hs.527104 NM_152770 HPRD:14597 C4orf22 - chromosome 4 open reading frame 22 protein-coding 13-PTNLD9-TUMOR_peak_30079 chr2 235889923 235890375 + 22.13179 NA intron (NM_014521, intron 1 of 5) intron (NM_014521, intron 1 of 5) 29521 NM_014521 23677 Hs.516777 NM_014521 HPRD:09285 SH3BP4 BOG25|TTP SH3-domain binding protein 4 protein-coding 13-PTNLD9-TUMOR_peak_53768 chr9 84352789 84353188 + 22.13179 NA intron (NR_109772, intron 1 of 3) MLT1H2|LTR|ERVL-MaLR 48360 NR_109772 101927502 Hs.528628 NR_109772 ENSG00000233926 LOC101927502 - uncharacterized LOC101927502 ncRNA 13-PTNLD9-TUMOR_peak_2520 chr1 94245146 94245641 + 22.11869 NA intron (NM_001261408, intron 2 of 13) intron (NM_001261408, intron 2 of 13) -66995 NR_030621 100126348 NR_030621 miRBase:MI0005567 MIR760 MIRN760|hsa-mir-760 microRNA 760 ncRNA 13-PTNLD9-TUMOR_peak_36936 chr3 183266081 183266320 + 22.11869 NA promoter-TSS (NR_046687) promoter-TSS (NR_046687) -323 NR_046687 100874019 NR_046687 KLHL6-AS1 - KLHL6 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_30655 chr20 25159560 25159851 + 22.11869 NA Intergenic Intergenic -16634 NM_001247 955 Hs.500375 NM_001247 HPRD:16013 ENTPD6 CD39L2|IL-6SAG|IL6ST2|NTPDase-6|dJ738P15.3 ectonucleoside triphosphate diphosphohydrolase 6 (putative) protein-coding 13-PTNLD9-TUMOR_peak_33715 chr3 10018792 10018944 + 22.11354 NA intron (NM_018447, intron 2 of 7) intron (NM_018447, intron 2 of 7) 9654 NM_018447 55831 Hs.475392 NM_018447 EMC3 POB|TMEM111 ER membrane protein complex subunit 3 protein-coding 13-PTNLD9-TUMOR_peak_16095 chr14 68677539 68677923 + 22.11354 NA intron (NM_133510, intron 7 of 10) intron (NM_133510, intron 7 of 10) 391235 NM_133510 5890 Hs.172587 NM_002877 HPRD:04255 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 13-PTNLD9-TUMOR_peak_50750 chr8 42349858 42350269 + 22.11354 NA intron (NM_006749, intron 1 of 10) intron (NM_006749, intron 1 of 10) 8915 NM_001257180 6575 Hs.653173 NM_006749 HPRD:08865 SLC20A2 GLVR-2|GLVR2|IBGC1|IBGC3|MLVAR|PIT-2|PIT2|RAM1 solute carrier family 20 (phosphate transporter), member 2 protein-coding 13-PTNLD9-TUMOR_peak_53392 chr9 66039350 66039771 + 22.09087 NA Intergenic Intergenic -417729 NR_121647 103352539 Hs.351215 NR_121647 LINC01410 - long intergenic non-protein coding RNA 1410 ncRNA 13-PTNLD9-TUMOR_peak_24808 chr19 36673522 36674362 + 22.08254 NA exon (NM_152477, exon 5 of 5) exon (NM_152477, exon 5 of 5) -30171 NM_001864 1346 Hs.421621 NM_001864 HPRD:00481 COX7A1 COX7A|COX7AH|COX7AM cytochrome c oxidase subunit VIIa polypeptide 1 (muscle) protein-coding 13-PTNLD9-TUMOR_peak_54277 chr9 106561000 106561234 + 22.07235 NA Intergenic Intergenic -200873 NR_109803 101928523 NR_109803 LOC101928523 - uncharacterized LOC101928523 ncRNA 13-PTNLD9-TUMOR_peak_7240 chr10 47171790 47171976 + 22.07134 NA intron (NM_001271702, intron 1 of 11).2 intron (NM_001271702, intron 1 of 11).2 2260 NM_001271703 653145 Hs.535306 NM_001040084 ENSG00000165390 ANXA8 ANX8 annexin A8 protein-coding 13-PTNLD9-TUMOR_peak_41819 chr5 116090353 116090664 + 22.06997 NA intron (NR_104678, intron 3 of 3) LTR32|LTR|ERVL 7397 NR_104678 102467223 Hs.570916 NR_104678 LOC102467223 - uncharacterized LOC102467223 ncRNA 13-PTNLD9-TUMOR_peak_36161 chr3 140077610 140077831 + 22.06997 NA intron (NM_022131, intron 2 of 16) intron (NM_022131, intron 2 of 16) 149911 NR_108084 101927808 Hs.581236 NR_108084 ENSG00000250433 CLSTN2-AS1 - CLSTN2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_34621 chr3 51378020 51378235 + 22.06997 NA intron (NM_004947, intron 37 of 52) intron (NM_004947, intron 37 of 52) -44541 NM_006010 7873 Hs.436446 NM_006010 HPRD:03558 MANF ARMET|ARP mesencephalic astrocyte-derived neurotrophic factor protein-coding 13-PTNLD9-TUMOR_peak_53773 chr9 84457472 84457954 + 22.06997 NA Intergenic Intergenic -70639 NR_026851 347127 Hs.215235 NM_198509 ENSG00000240632 SPATA31D5P FAM75D5|FAM75D5P SPATA31 subfamily D, member 5, pseudogene pseudo 13-PTNLD9-TUMOR_peak_6157 chr1 245951607 245951852 + 22.06918 NA intron (NM_022743, intron 10 of 11) intron (NM_022743, intron 10 of 11) 628985 NM_022743 64754 Hs.567571 NM_022743 HPRD:12297 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_8855 chr11 3468408 3468565 + 22.06235 NA Intergenic Intergenic -55341 NR_044999 10821 Hs.637689 NR_044999 ENSG00000189398 OR7E12P HG1058|OR11-3|OR7E58P|OR7E79P|OR7E81P|OST021 olfactory receptor, family 7, subfamily E, member 12 pseudogene pseudo 13-PTNLD9-TUMOR_peak_29943 chr2 227526560 227526831 + 22.06235 NA Intergenic Intergenic -3186 NR_049887 100847053 NR_049887 miRBase:MI0019309 MIR5702 - microRNA 5702 ncRNA 13-PTNLD9-TUMOR_peak_48658 chr7 102285883 102286120 + 22.05618 NA intron (NM_032959, intron 4 of 8) intron (NM_032959, intron 4 of 8) -2763 NM_001114403 100134938 Hs.610255 NM_001114403 ENSG00000267368 UPK3BL UPLP uroplakin 3B-like protein-coding 13-PTNLD9-TUMOR_peak_35232 chr3 105511141 105511666 + 22.04905 NA intron (NM_170662, intron 3 of 18) intron (NM_170662, intron 3 of 18) 76484 NM_170662 868 Hs.430589 NM_170662 HPRD:05136 CBLB Cbl-b|RNF56 Cbl proto-oncogene B, E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_13269 chr12 69446855 69447131 + 22.04905 NA Intergenic Intergenic -89973 NM_001874 1368 Hs.654387 NM_001874 HPRD:00273 CPM - carboxypeptidase M protein-coding 13-PTNLD9-TUMOR_peak_28220 chr2 119729322 119729536 + 22.04429 NA intron (NM_006770, intron 4 of 16) intron (NM_006770, intron 4 of 16) 29684 NM_006770 8685 Hs.67726 NM_006770 HPRD:05337 MARCO SCARA2 macrophage receptor with collagenous structure protein-coding 13-PTNLD9-TUMOR_peak_22553 chr18 9673197 9673803 + 22.04245 NA Intergenic Intergenic -34728 NM_006868 11031 Hs.99528 NM_006868 HPRD:05751 RAB31 Rab22B RAB31, member RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_5277 chr1 206672014 206672316 + 22.04051 NA Intergenic L2c|LINE|L2 -8698 NM_182664 83593 Hs.497579 NM_031437 HPRD:06117 RASSF5 Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3 Ras association (RalGDS/AF-6) domain family member 5 protein-coding 13-PTNLD9-TUMOR_peak_13314 chr12 71039705 71039996 + 22.03054 NA intron (NR_073474, intron 9 of 10) intron (NR_073474, intron 9 of 10) -8630 NM_001109754 5787 Hs.434375 NM_002837 HPRD:01474 PTPRB HPTP-BETA|HPTPB|PTPB|R-PTP-BETA|VEPTP protein tyrosine phosphatase, receptor type, B protein-coding 13-PTNLD9-TUMOR_peak_6234 chr10 500957 501112 + 22.03054 NA intron (NM_014974, intron 3 of 36) intron (NM_014974, intron 3 of 36) 186684 NR_049884 100847086 NR_049884 MIR5699 - microRNA 5699 ncRNA 13-PTNLD9-TUMOR_peak_37926 chr4 9057598 9057948 + 22.03054 NA Intergenic Intergenic 106296 NM_001040071 650293 Hs.535167 NM_001040071 LOC650293 - seven transmembrane helix receptor protein-coding 13-PTNLD9-TUMOR_peak_9427 chr11 32404255 32404452 + 22.03054 NA Intergenic MIRb|SINE|MIR 48010 NM_001198552 7490 Hs.591980 NM_000378 HPRD:06163 WT1 AWT1|EWS-WT1|GUD|NPHS4|WAGR|WIT-2|WT33 Wilms tumor 1 protein-coding 13-PTNLD9-TUMOR_peak_42552 chr5 148318025 148318429 + 22.03054 NA Intergenic Intergenic 112071 NM_000024 154 Hs.2551 NM_000024 HPRD:00187 ADRB2 ADRB2R|ADRBR|B2AR|BAR|BETA2AR adrenoceptor beta 2, surface protein-coding 13-PTNLD9-TUMOR_peak_37392 chr3 195575806 195576227 + 22.01809 NA Intergenic MER41A|LTR|ERV1 33250 NR_106887 102465977 NR_106887 MIR6829 hsa-mir-6829 microRNA 6829 ncRNA 13-PTNLD9-TUMOR_peak_37950 chr4 9522163 9522506 + 22.00630 NA Intergenic Intergenic 35603 NR_031688 100302277 NR_031688 miRBase:MI0006422 MIR548I2 MIR548I-2|MIRN548I2|hsa-mir-548i-2 microRNA 548i-2 ncRNA 13-PTNLD9-TUMOR_peak_45135 chr6 44085186 44085530 + 21.99708 NA intron (NM_032111, intron 1 of 2) intron (NM_032111, intron 1 of 2) 9833 NM_032111 64928 Hs.311190 NM_032111 HPRD:14741 MRPL14 L14mt|L32mt|MRP-L14|MRP-L32|MRPL32|RMPL32|RPML32 mitochondrial ribosomal protein L14 protein-coding 13-PTNLD9-TUMOR_peak_50683 chr8 40065883 40066129 + 21.99522 NA Intergenic Intergenic 55019 NM_020130 56892 Hs.591849 NM_020130 HPRD:09650 C8orf4 TC-1|TC1 chromosome 8 open reading frame 4 protein-coding 13-PTNLD9-TUMOR_peak_27461 chr2 86129736 86129961 + 21.99522 NA Intergenic Intergenic 13445 NR_110569 101928113 Hs.625888 NR_110569 ST3GAL5-AS1 - ST3GAL5 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_52658 chr9 4262760 4262921 + 21.99315 NA intron (NM_001042413, intron 2 of 10) MER119|DNA|hAT-Charlie 37195 NM_001042413 169792 Hs.162125 NM_152629 HPRD:13582 GLIS3 ZNF515 GLIS family zinc finger 3 protein-coding 13-PTNLD9-TUMOR_peak_6601 chr10 18124689 18124909 + 21.99315 NA intron (NM_002438, intron 4 of 29) MER5A|DNA|hAT-Charlie -9237 NR_030167 574445 NR_030167 MIR511 MIR511-1|MIR511-2|MIRN511-1|MIRN511-2|hsa-mir-511|hsa-mir-511-2 microRNA 511 ncRNA 13-PTNLD9-TUMOR_peak_44693 chr6 33577326 33577603 + 21.99315 NA Intergenic Intergenic -11692 NM_002224 3710 Hs.65758 NM_002224 HPRD:00926 ITPR3 IP3R|IP3R3 inositol 1,4,5-trisphosphate receptor, type 3 protein-coding 13-PTNLD9-TUMOR_peak_45012 chr6 42067413 42067763 + 21.99305 NA Intergenic Intergenic 43127 NM_001164446 647024 Hs.444277 NM_001164446 ENSG00000188112 C6orf132 bA7K24.2 chromosome 6 open reading frame 132 protein-coding 13-PTNLD9-TUMOR_peak_11657 chr11 130273270 130273716 + 21.99305 NA Intergenic Intergenic 25046 NM_007037 11095 Hs.271605 NM_007037 HPRD:05531 ADAMTS8 ADAM-TS8|METH2 ADAM metallopeptidase with thrombospondin type 1 motif, 8 protein-coding 13-PTNLD9-TUMOR_peak_30982 chr20 36772629 36773013 + 21.99305 NA intron (NM_198951, intron 6 of 9) intron (NM_198951, intron 6 of 9) 20879 NM_004613 7052 Hs.517033 NM_004613 HPRD:01825 TGM2 G-ALPHA-h|GNAH|HEL-S-45|TG2|TGC transglutaminase 2 protein-coding 13-PTNLD9-TUMOR_peak_24148 chr19 13964273 13964535 + 21.99182 NA Intergenic Tigger7|DNA|TcMar-Tigger -16931 NR_029495 407010 NR_029495 miRBase:MI0000079 MIR23A MIRN23A|hsa-mir-23a|miRNA23A microRNA 23a ncRNA 13-PTNLD9-TUMOR_peak_14710 chr13 45941643 45941855 + 21.99176 NA intron (NR_024458, intron 3 of 10) AluJb|SINE|Alu 26269 NR_024458 100190939 Hs.375766 NR_024458 ENSG00000170919 TPT1-AS1 - TPT1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_52631 chr9 2559604 2559865 + 21.98064 NA intron (NR_015375, intron 1 of 3) L1M1|LINE|L1 -62059 NM_001018056 7436 Hs.370422 NM_003383 HPRD:01895 VLDLR CARMQ1|CHRMQ1|VLDLRCH very low density lipoprotein receptor protein-coding 13-PTNLD9-TUMOR_peak_21816 chr17 64271849 64272017 + 21.98064 NA Intergenic Intergenic -26993 NM_002737 5578 Hs.531704 NM_002737 HPRD:01498 PRKCA AAG6|PKC-alpha|PKCA|PRKACA protein kinase C, alpha protein-coding 13-PTNLD9-TUMOR_peak_44611 chr6 32153518 32153705 + 21.97811 NA 3' UTR (NM_002586, exon 9 of 9).3 3' UTR (NM_002586, exon 9 of 9).3 -1512 NM_001136 177 Hs.534342 NM_001136 HPRD:02568 AGER RAGE advanced glycosylation end product-specific receptor protein-coding 13-PTNLD9-TUMOR_peak_11593 chr11 128318462 128318735 + 21.97811 NA Intergenic Intergenic 73607 NM_005238 2113 Hs.369438 NM_005238 HPRD:01260 ETS1 ETS-1|EWSR2|p54 v-ets avian erythroblastosis virus E26 oncogene homolog 1 protein-coding 13-PTNLD9-TUMOR_peak_42550 chr5 148292623 148292927 + 21.96428 NA Intergenic Intergenic 86619 NM_000024 154 Hs.2551 NM_000024 HPRD:00187 ADRB2 ADRB2R|ADRBR|B2AR|BAR|BETA2AR adrenoceptor beta 2, surface protein-coding 13-PTNLD9-TUMOR_peak_46313 chr6 151362183 151362619 + 21.96428 NA intron (NM_001242768, intron 26 of 27) intron (NM_001242768, intron 26 of 27) 174932 NM_001242768 25902 Hs.591343 NM_015440 HPRD:09967 MTHFD1L FTHFSDC1|MTC1THFS|dJ292B18.2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like protein-coding 13-PTNLD9-TUMOR_peak_1399 chr1 42423278 42423633 + 21.95091 NA intron (NR_038261, intron 1 of 3) intron (NR_038261, intron 1 of 3) -38959 NR_038260 59269 Hs.403972 NM_024503 HPRD:09442 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 13-PTNLD9-TUMOR_peak_35719 chr3 125986058 125986527 + 21.95091 NA Intergenic CpG -86263 NM_001270364 10840 Hs.434435 NM_012190 HPRD:02594 ALDH1L1 10-FTHFDH|10-fTHF|FDH|FTHFD aldehyde dehydrogenase 1 family, member L1 protein-coding 13-PTNLD9-TUMOR_peak_36555 chr3 158479216 158479439 + 21.95091 NA Intergenic L2b|LINE|L2 -29052 NM_206963 5918 Hs.131269 NM_002888 HPRD:05477 RARRES1 LXNL|TIG1 retinoic acid receptor responder (tazarotene induced) 1 protein-coding 13-PTNLD9-TUMOR_peak_28104 chr2 113385048 113385218 + 21.94400 NA Intergenic Intergenic 16624 NR_033871 400999 Hs.585221 NR_033871 FLJ42351 - uncharacterized LOC400999 ncRNA 13-PTNLD9-TUMOR_peak_3859 chr1 155220568 155220739 + 21.93681 NA intron (NM_198264, intron 5 of 8) intron (NM_198264, intron 5 of 8) 4621 NM_001267608 10712 Hs.348308 NM_006589 HPRD:08511 FAM189B C1orf2|COTE1 family with sequence similarity 189, member B protein-coding 13-PTNLD9-TUMOR_peak_53606 chr9 73569097 73569408 + 21.92488 NA intron (NM_001007471, intron 1 of 24) intron (NM_001007471, intron 1 of 24) -85278 NM_206945 80036 Hs.47288 NM_020952 HPRD:10605 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel, subfamily M, member 3 protein-coding 13-PTNLD9-TUMOR_peak_53317 chr9 43474253 43474449 + 21.92488 NA Intergenic Intergenic 156379 NM_001145196 389730 Hs.455299 NM_001145196 ENSG00000185775 SPATA31A6 FAM75A6 SPATA31 subfamily A, member 6 protein-coding 13-PTNLD9-TUMOR_peak_6598 chr10 17877735 17877955 + 21.92488 NA intron (NM_002438, intron 4 of 29) MER5A|DNA|hAT-Charlie -9262 NR_030167 574445 NR_030167 MIR511 MIR511-1|MIR511-2|MIRN511-1|MIRN511-2|hsa-mir-511|hsa-mir-511-2 microRNA 511 ncRNA 13-PTNLD9-TUMOR_peak_25732 chr19 56681756 56682009 + 21.92168 NA Intergenic Intergenic -5507 NM_033106 85569 Hs.283915 NM_033106 HPRD:17027 GALP - galanin-like peptide protein-coding 13-PTNLD9-TUMOR_peak_47296 chr7 41956123 41956509 + 21.92168 NA Intergenic Intergenic -213610 NM_002192 3624 Hs.583348 NM_002192 INHBA EDF|FRP inhibin, beta A protein-coding 13-PTNLD9-TUMOR_peak_18816 chr16 24657615 24657870 + 21.92168 NA Intergenic Charlie5|DNA|hAT-Charlie 24641 NR_122072 400511 Hs.592028 NR_122072 HPRD:16985 LOC400511 - uncharacterized LOC400511 ncRNA 13-PTNLD9-TUMOR_peak_36344 chr3 149219380 149219751 + 21.92168 NA intron (NM_004617, intron 4 of 4) intron (NM_004617, intron 4 of 4) 27197 NM_004617 7104 Hs.133527 NM_004617 TM4SF4 ILTMP|il-TMP transmembrane 4 L six family member 4 protein-coding 13-PTNLD9-TUMOR_peak_48375 chr7 95943798 95944037 + 21.91193 NA intron (NR_027662, intron 1 of 16) intron (NR_027662, intron 1 of 16) 7542 NM_014251 10165 Hs.489190 NM_014251 HPRD:04837 SLC25A13 ARALAR2|CITRIN|CTLN2 solute carrier family 25 (aspartate/glutamate carrier), member 13 protein-coding 13-PTNLD9-TUMOR_peak_22434 chr18 2050687 2050990 + 21.91136 NA Intergenic Intergenic 520651 NM_022840 64863 Hs.126888 NM_022840 HPRD:14390 METTL4 HsT661 methyltransferase like 4 protein-coding 13-PTNLD9-TUMOR_peak_22176 chr17 76588432 76588899 + 21.91136 NA Intergenic Intergenic -15189 NM_173628 8632 Hs.375975 NM_003727 HPRD:16830 DNAH17 DNAHL1|DNEL2 dynein, axonemal, heavy chain 17 protein-coding 13-PTNLD9-TUMOR_peak_50916 chr8 51925406 51925612 + 21.91136 NA Intergenic L1PA17|LINE|L1 796496 NM_144651 137902 Hs.444882 NM_144651 HPRD:08693 PXDNL PMR1|PRM1|VPO2 peroxidasin homolog (Drosophila)-like protein-coding 13-PTNLD9-TUMOR_peak_25341 chr19 49428682 49428888 + 21.90514 NA Intergenic AluJo|SINE|Alu -6637 NR_046633 100874085 Hs.569933 NR_046633 NUCB1-AS1 - NUCB1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_13720 chr12 107742782 107743256 + 21.90514 NA intron (NM_001018072, intron 1 of 16) intron (NM_001018072, intron 1 of 16) 30822 NM_001018072 121551 Hs.271272 NM_152322 HPRD:12536 BTBD11 ABTB2B BTB (POZ) domain containing 11 protein-coding 13-PTNLD9-TUMOR_peak_4344 chr1 168552815 168553211 + 21.90514 NA Intergenic Intergenic 7302 NM_002995 6375 Hs.546295 NM_002995 HPRD:02595 XCL1 ATAC|LPTN|LTN|SCM-1|SCM-1a|SCM1|SCM1A|SCYC1 chemokine (C motif) ligand 1 protein-coding 13-PTNLD9-TUMOR_peak_25567 chr19 53239009 53239281 + 21.90514 NA promoter-TSS (NM_001161499) promoter-TSS (NM_001161499) -838 NM_001161499 81856 Hs.143951 NM_030972 HPRD:15872 ZNF611 - zinc finger protein 611 protein-coding 13-PTNLD9-TUMOR_peak_35483 chr3 118900745 118901003 + 21.90514 NA intron (NM_006952, intron 1 of 7) intron (NM_006952, intron 1 of 7) 8449 NM_006952 7348 Hs.271580 NM_006952 HPRD:03853 UPK1B TSPAN20|UPIB|UPK1 uroplakin 1B protein-coding 13-PTNLD9-TUMOR_peak_36130 chr3 139153617 139154187 + 21.89598 NA intron (NR_121609, intron 3 of 4) intron (NR_121609, intron 3 of 4) 41450 NM_004164 5948 Hs.655516 NM_004164 HPRD:07184 RBP2 CRABP-II|CRBP2|CRBPII|RBPC2 retinol binding protein 2, cellular protein-coding 13-PTNLD9-TUMOR_peak_42985 chr5 170948314 170948685 + 21.89598 NA Intergenic Intergenic 101832 NM_003862 8817 Hs.87191 NM_003862 HPRD:04766 FGF18 FGF-18|ZFGF5 fibroblast growth factor 18 protein-coding 13-PTNLD9-TUMOR_peak_31568 chr20 52352151 52352387 + 21.89557 NA Intergenic Intergenic 139979 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_14830 chr13 65297874 65298246 + 21.89312 NA Intergenic Intergenic -985909 NR_047011 100874157 Hs.539670 NR_047011 ENSG00000231061 LINC00395 - long intergenic non-protein coding RNA 395 ncRNA 13-PTNLD9-TUMOR_peak_6782 chr10 29273397 29273697 + 21.89312 NA Intergenic Intergenic 138210 NM_001278522 283080 NM_001278522 ENSG00000204365 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 13-PTNLD9-TUMOR_peak_18891 chr16 28704659 28705083 + 21.88879 NA intron (NM_001199142, intron 1 of 20) Cheshire|DNA|hAT-Charlie 4992 NM_001199142 8663 Hs.567374 NM_003752 HPRD:04889 EIF3C EIF3CL|EIF3S8|eIF3-p110 eukaryotic translation initiation factor 3, subunit C protein-coding 13-PTNLD9-TUMOR_peak_10850 chr11 86454528 86455061 + 21.87379 NA Intergenic Intergenic -47307 NM_001293180 11098 Hs.25338 NM_007173 HPRD:07149 PRSS23 SIG13|SPUVE|ZSIG13 protease, serine, 23 protein-coding 13-PTNLD9-TUMOR_peak_41686 chr5 107211598 107211858 + 21.85812 NA intron (NM_001163315, intron 8 of 8) intron (NM_001163315, intron 8 of 8) -205132 NM_001962 1946 Hs.288741 NM_001962 HPRD:03324 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin-A5 protein-coding 13-PTNLD9-TUMOR_peak_15743 chr14 51422297 51422697 + 21.85812 NA Intergenic LTR88b|LTR|Gypsy? -11249 NM_002863 5836 Hs.282417 NM_002863 HPRD:01987 PYGL GSD6 phosphorylase, glycogen, liver protein-coding 13-PTNLD9-TUMOR_peak_40409 chr5 15702300 15702486 + 21.85696 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -87282 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 13-PTNLD9-TUMOR_peak_38871 chr4 89713547 89714235 + 21.85696 NA intron (NM_001265578, intron 1 of 16) intron (NM_001265578, intron 1 of 16) 30621 NM_001015045 10144 Hs.97270 NM_014883 HPRD:10944 FAM13A ARHGAP48|FAM13A1 family with sequence similarity 13, member A protein-coding 13-PTNLD9-TUMOR_peak_39610 chr4 151134075 151134378 + 21.85308 NA intron (NR_036614, intron 5 of 16) intron (NR_036614, intron 5 of 16) 134800 NR_036614 166614 Hs.591683 NM_152619 HPRD:13122 DCLK2 CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2 doublecortin-like kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_41836 chr5 118736018 118736301 + 21.85308 NA Intergenic MER77|LTR|ERVL 44644 NM_014350 25816 Hs.618488 NM_014350 TNFAIP8 GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2 tumor necrosis factor, alpha-induced protein 8 protein-coding 13-PTNLD9-TUMOR_peak_37124 chr3 187608479 187608640 + 21.85308 NA Intergenic L1PA2|LINE|L1 -145046 NM_001706 604 Hs.478588 NM_001706 HPRD:00180 BCL6 BCL5|BCL6A|LAZ3|ZBTB27|ZNF51 B-cell CLL/lymphoma 6 protein-coding 13-PTNLD9-TUMOR_peak_26328 chr2 25301386 25301663 + 21.84831 NA intron (NM_014971, intron 1 of 22) intron (NM_014971, intron 1 of 22) 36551 NM_014971 22979 Hs.4892 NM_014971 EFR3B KIAA0953 EFR3 homolog B (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_16734 chr15 20442219 20442785 + 21.84500 NA Intergenic L2a|LINE|L2 -45495 NR_038836 646096 Hs.448789 NR_038836 CHEK2P2 - checkpoint kinase 2 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_10615 chr11 73849678 73849916 + 21.83131 NA exon (NM_015531, exon 5 of 31) exon (NM_015531, exon 5 of 31) 32267 NM_001286577 26005 Hs.557938 NM_015531 HPRD:16811 C2CD3 - C2 calcium-dependent domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_29871 chr2 220271642 220272007 + 21.83131 NA Intergenic Intergenic -11275 NM_001927 1674 Hs.594952 NM_001927 HPRD:00514 DES CSM1|CSM2|LGMD2R desmin protein-coding 13-PTNLD9-TUMOR_peak_48314 chr7 92392952 92393242 + 21.81301 NA intron (NM_001259, intron 3 of 7) intron (NM_001259, intron 3 of 7) 70134 NM_001259 1021 Hs.119882 NM_001259 HPRD:04533 CDK6 PLSTIRE cyclin-dependent kinase 6 protein-coding 13-PTNLD9-TUMOR_peak_39161 chr4 119350149 119350394 + 21.81301 NA Intergenic Intergenic -76349 NM_003619 8492 Hs.445857 NM_003619 HPRD:05989 PRSS12 BSSP-3|BSSP3|MRT1 protease, serine, 12 (neurotrypsin, motopsin) protein-coding 13-PTNLD9-TUMOR_peak_30169 chr2 240692086 240692257 + 21.80558 NA intron (NR_037808, intron 1 of 2) intron (NR_037808, intron 1 of 2) 7617 NR_037808 150935 Hs.555582 NR_037808 LOC150935 - uncharacterized LOC150935 ncRNA 13-PTNLD9-TUMOR_peak_24360 chr19 18026709 18027064 + 21.79573 NA Intergenic MER21C|LTR|ERVL -16938 NM_001136203 115098 Hs.100043 NM_138442 HPRD:14008 CCDC124 - coiled-coil domain containing 124 protein-coding 13-PTNLD9-TUMOR_peak_30942 chr20 35504384 35504646 + 21.79573 NA promoter-TSS (NM_080628) promoter-TSS (NM_080628) -55 NM_080628 140711 Hs.472630 NM_080628 HPRD:18554 TLDC2 C20orf118|dJ132F21.2 TBC/LysM-associated domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_39441 chr4 140737154 140737376 + 21.79466 NA intron (NM_018717, intron 3 of 5) intron (NM_018717, intron 3 of 5) 150343 NM_002413 4258 Hs.81874 NM_002413 HPRD:03436 MGST2 GST2|MGST-II microsomal glutathione S-transferase 2 protein-coding 13-PTNLD9-TUMOR_peak_28608 chr2 139372889 139373233 + 21.79466 NA Intergenic Intergenic 113711 NM_001001664 339745 Hs.333297 NM_001001664 HPRD:11261 SPOPL BTBD33 speckle-type POZ protein-like protein-coding 13-PTNLD9-TUMOR_peak_42410 chr5 141614650 141615002 + 21.79466 NA Intergenic Intergenic 89156 NM_001293289 81848 Hs.323308 NM_030964 HPRD:10466 SPRY4 HH17 sprouty homolog 4 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_2091 chr1 65713389 65713907 + 21.78966 NA Intergenic Intergenic -16729 NM_001256865 9829 Hs.647643 NM_014787 HPRD:16326 DNAJC6 DJC6|PARK19 DnaJ (Hsp40) homolog, subfamily C, member 6 protein-coding 13-PTNLD9-TUMOR_peak_10820 chr11 85871649 85871934 + 21.77516 NA Intergenic L2c|LINE|L2 -84015 NM_152991 8726 Hs.503510 NM_003797 HPRD:09343 EED HEED|WAIT1 embryonic ectoderm development protein-coding 13-PTNLD9-TUMOR_peak_41123 chr5 67752396 67752826 + 21.77516 NA Intergenic Intergenic 164215 NM_001242466 5295 Hs.132225 NM_181504 HPRD:01381 PIK3R1 AGM7|GRB1|p85|p85-ALPHA phosphoinositide-3-kinase, regulatory subunit 1 (alpha) protein-coding 13-PTNLD9-TUMOR_peak_4263 chr1 165738052 165738312 + 21.77130 NA promoter-TSS (NM_001256164) promoter-TSS (NM_001256164) 16 NR_125374 100147773 Hs.633824 NR_125374 LOC100147773 - uncharacterized LOC100147773 ncRNA 13-PTNLD9-TUMOR_peak_45343 chr6 53599406 53599606 + 21.75190 NA Intergenic L1MEd|LINE|L1 -60272 NM_018214 55227 Hs.606493 NM_018214 ENSG00000137269 LRRC1 LANO|dJ523E19.1 leucine rich repeat containing 1 protein-coding 13-PTNLD9-TUMOR_peak_21219 chr17 43389420 43389658 + 21.74937 NA intron (NM_003954, intron 1 of 15) intron (NM_003954, intron 1 of 15) 4891 NM_003954 9020 Hs.404183 NM_003954 MAP3K14 FTDCR1B|HS|HSNIK|NIK mitogen-activated protein kinase kinase kinase 14 protein-coding 13-PTNLD9-TUMOR_peak_20136 chr16 89568727 89569270 + 21.74937 NA Intergenic MLT1F1|LTR|ERVL-MaLR -5798 NM_003119 6687 Hs.185597 NM_003119 HPRD:04149 SPG7 CAR|CMAR|PGN|SPG5C spastic paraplegia 7 (pure and complicated autosomal recessive) protein-coding 13-PTNLD9-TUMOR_peak_37269 chr3 193109735 193110065 + 21.73591 NA Intergenic Intergenic -13386 NM_198505 344905 Hs.658032 NM_198505 HPRD:18597 ATP13A5 - ATPase type 13A5 protein-coding 13-PTNLD9-TUMOR_peak_27915 chr2 106013313 106013466 + 21.73591 NA intron (NM_001039492, intron 1 of 6) intron (NM_001039492, intron 1 of 6) 2186 NM_001039492 2274 Hs.443687 NM_001450 HPRD:04026 FHL2 AAG11|DRAL|FHL-2|SLIM-3|SLIM3 four and a half LIM domains 2 protein-coding 13-PTNLD9-TUMOR_peak_13152 chr12 64686961 64687163 + 21.73318 NA intron (NM_001099676, intron 4 of 10) L1PA2|LINE|L1 -70986 NM_001300941 144577 Hs.444671 NM_152440 HPRD:08727 C12orf66 - chromosome 12 open reading frame 66 protein-coding 13-PTNLD9-TUMOR_peak_48489 chr7 99735565 99735812 + 21.72247 NA Intergenic Intergenic -10842 NM_001008395 389541 Hs.406520 NM_001008395 HPRD:17380 LAMTOR4 C7orf59 late endosomal/lysosomal adaptor, MAPK and MTOR activator 4 protein-coding 13-PTNLD9-TUMOR_peak_51405 chr8 101539305 101539554 + 21.72247 NA intron (NM_198401, intron 5 of 5) intron (NM_198401, intron 5 of 5) 32510 NM_001270378 157567 Hs.530199 NM_198401 HPRD:14103 ANKRD46 ANK-S|GENX-115279 ankyrin repeat domain 46 protein-coding 13-PTNLD9-TUMOR_peak_4076 chr1 159966513 159966766 + 21.72247 NA Intergenic Intergenic 35144 NM_145167 93183 Hs.552810 NM_145167 HPRD:15133 PIGM GPI-MT-I phosphatidylinositol glycan anchor biosynthesis, class M protein-coding 13-PTNLD9-TUMOR_peak_31774 chr20 61187646 61187816 + 21.72247 NA Intergenic Intergenic 25612 NR_029676 406923 NR_029676 MIR133A2 MIRN133A2 microRNA 133a-2 ncRNA 13-PTNLD9-TUMOR_peak_7851 chr10 80917366 80917602 + 21.72009 NA intron (NM_020338, intron 3 of 24) intron (NM_020338, intron 3 of 24) 88692 NM_020338 57178 Hs.193118 NM_020338 HPRD:12115 ZMIZ1 MIZ|RAI17|TRAFIP10|ZIMP10|hZIMP10 zinc finger, MIZ-type containing 1 protein-coding 13-PTNLD9-TUMOR_peak_6341 chr10 4728882 4729172 + 21.72009 NA Intergenic Intergenic -8765 NR_024475 100216001 Hs.634869 NR_024475 ENSG00000231298 LINC00704 - long intergenic non-protein coding RNA 704 ncRNA 13-PTNLD9-TUMOR_peak_18878 chr16 28432735 28432997 + 21.70984 NA intron (NM_001199142, intron 1 of 20).2 AluSz6|SINE|Alu 4909 NM_001199142 8663 Hs.567374 NM_003752 HPRD:04889 EIF3C EIF3CL|EIF3S8|eIF3-p110 eukaryotic translation initiation factor 3, subunit C protein-coding 13-PTNLD9-TUMOR_peak_29426 chr2 196228278 196228476 + 21.70271 NA Intergenic Intergenic -293155 NM_001127257 57181 Hs.650158 NM_020342 HPRD:10572 SLC39A10 LZT-Hs2 solute carrier family 39 (zinc transporter), member 10 protein-coding 13-PTNLD9-TUMOR_peak_4685 chr1 183029596 183029807 + 21.70271 NA intron (NM_002293, intron 1 of 27) L2c|LINE|L2 37106 NM_002293 3915 Hs.609663 NM_002293 HPRD:01030 LAMC1 LAMB2 laminin, gamma 1 (formerly LAMB2) protein-coding 13-PTNLD9-TUMOR_peak_19961 chr16 85038181 85038349 + 21.70271 NA intron (NM_001145548, intron 1 of 8) L2c|LINE|L2 6876 NM_017740 55625 Hs.461610 NM_017740 HPRD:15722 ZDHHC7 DHHC7|SERZ-B|SERZ1|ZNF370 zinc finger, DHHC-type containing 7 protein-coding 13-PTNLD9-TUMOR_peak_37898 chr4 8538911 8539177 + 21.68770 NA Intergenic Intergenic -42920 NR_045511 27201 Hs.740355 NM_080819 GPR78 - G protein-coupled receptor 78 protein-coding 13-PTNLD9-TUMOR_peak_16089 chr14 68606957 68607262 + 21.67381 NA intron (NM_133510, intron 7 of 10) intron (NM_133510, intron 7 of 10) 320613 NM_133510 5890 Hs.172587 NM_002877 HPRD:04255 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 13-PTNLD9-TUMOR_peak_42170 chr5 135157145 135157474 + 21.67381 NA Intergenic Intergenic -13056 NM_145282 153328 Hs.412418 NM_145282 HPRD:14098 SLC25A48 - solute carrier family 25, member 48 protein-coding 13-PTNLD9-TUMOR_peak_4035 chr1 159010109 159010295 + 21.67183 NA intron (NM_005531, intron 7 of 10) intron (NM_005531, intron 7 of 10) 30520 NM_001206567 3428 Hs.380250 NM_005531 HPRD:00969 IFI16 IFNGIP1|PYHIN2 interferon, gamma-inducible protein 16 protein-coding 13-PTNLD9-TUMOR_peak_35570 chr3 122612959 122613140 + 21.67183 NA Intergenic MIR|SINE|MIR 7689 NR_024618 100129550 Hs.61558 NR_024618 ENSG00000273033 LOC100129550 - uncharacterized LOC100129550 ncRNA 13-PTNLD9-TUMOR_peak_37861 chr4 7980229 7980574 + 21.66958 NA intron (NM_001130085, intron 17 of 17) intron (NM_001130085, intron 17 of 17) -38748 NM_001134647 60312 Hs.529369 NM_021638 HPRD:09747 AFAP1 AFAP|AFAP-110|AFAP110 actin filament associated protein 1 protein-coding 13-PTNLD9-TUMOR_peak_32750 chr22 19868677 19869028 + 21.66958 NA intron (NM_006440, intron 12 of 17) intron (NM_006440, intron 12 of 17) -26390 NM_053004 54584 Hs.105642 NM_053004 HPRD:13591 GNB1L DGCRK3|GY2|WDR14|WDVCF guanine nucleotide binding protein (G protein), beta polypeptide 1-like protein-coding 13-PTNLD9-TUMOR_peak_33261 chr22 38744209 38744477 + 21.65596 NA intron (NR_002821, intron 4 of 4) intron (NR_002821, intron 4 of 4) -30254 NM_001894 1454 Hs.474833 NM_001894 HPRD:02919 CSNK1E CKIepsilon|HCKIE casein kinase 1, epsilon protein-coding 13-PTNLD9-TUMOR_peak_36356 chr3 149454012 149454322 + 21.65596 NA Intergenic Intergenic 16119 NM_016094 51122 Hs.432729 NM_016094 HPRD:13081 COMMD2 - COMM domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_846 chr1 28455758 28456036 + 21.65596 NA Intergenic Intergenic -40749 NM_001282560 2140 Hs.185774 NM_001990 HPRD:09042 EYA3 - EYA transcriptional coactivator and phosphatase 3 protein-coding 13-PTNLD9-TUMOR_peak_45011 chr6 42059424 42059695 + 21.64886 NA Intergenic L2a|LINE|L2 41308 NM_138572 129685 Hs.520122 NM_138572 HPRD:18167 TAF8 43|II|TAF|TAFII-43|TAFII43|TBN TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 43kDa protein-coding 13-PTNLD9-TUMOR_peak_27782 chr2 98833197 98833439 + 21.63397 NA intron (NM_144992, intron 13 of 27) MIRb|SINE|MIR -129300 NM_001079878 1261 Hs.234785 NM_001298 HPRD:02504 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 13-PTNLD9-TUMOR_peak_33350 chr22 42164506 42164740 + 21.63397 NA intron (NM_152513, intron 19 of 30) MSTA|LTR|ERVL-MaLR -32055 NM_024821 79879 Hs.442623 NM_024821 HPRD:07988 CCDC134 dJ821D11.3 coiled-coil domain containing 134 protein-coding 13-PTNLD9-TUMOR_peak_33400 chr22 44185406 44185649 + 21.63397 NA intron (NM_022785, intron 2 of 31) intron (NM_022785, intron 2 of 31) 22690 NM_022785 64800 Hs.658996 NM_022785 HPRD:13391 EFCAB6 DJBP|HSCBCIP1|dJ185D5.1 EF-hand calcium binding domain 6 protein-coding 13-PTNLD9-TUMOR_peak_6156 chr1 245928563 245928831 + 21.63397 NA intron (NM_022743, intron 10 of 11) AluJb|SINE|Alu 610410 NM_018012 55083 Hs.368096 NM_018012 ENSG00000162849 KIF26B - kinesin family member 26B protein-coding 13-PTNLD9-TUMOR_peak_22628 chr18 12279166 12279433 + 21.63107 NA Intergenic Intergenic 24939 NR_036468 1149 Hs.249129 NM_001279 CIDEA CIDE-A cell death-inducing DFFA-like effector a protein-coding 13-PTNLD9-TUMOR_peak_16412 chr14 89960419 89960612 + 21.63107 NA intron (NM_001085471, intron 1 of 6) intron (NM_001085471, intron 1 of 6) 76817 NR_036500 400236 Hs.585207 NR_036500 ENSG00000258920 FOXN3-AS1 - FOXN3 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_26848 chr2 47270739 47271035 + 21.63107 NA intron (NM_001288955, intron 14 of 18) intron (NM_001288955, intron 14 of 18) -101893 NM_001171511 90411 Hs.662152 NM_139279 HPRD:09693 MCFD2 F5F8D|F5F8D2|LMAN1IP|SDNSF multiple coagulation factor deficiency 2 protein-coding 13-PTNLD9-TUMOR_peak_18011 chr15 93347058 93347540 + 21.63107 NA Intergenic Intergenic 8585 NR_033769 728619 Hs.684129 NR_033769 ASB9P1 - ankyrin repeat and SOCS box containing 9 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_49009 chr7 128742620 128743022 + 21.62131 NA Intergenic Intergenic -23504 NR_002144 407835 Hs.592273 NR_002144 LOC407835 - mitogen-activated protein kinase kinase 2 pseudogene pseudo 13-PTNLD9-TUMOR_peak_12832 chr12 52763047 52763353 + 21.61896 NA Intergenic Intergenic -1891 NM_002283 3891 Hs.182507 NM_002283 HPRD:04139 KRT85 ECTD4|HB5|Hb-5|K85|KRTHB5|hHb5 keratin 85 protein-coding 13-PTNLD9-TUMOR_peak_31572 chr20 52390331 52390911 + 21.61896 NA Intergenic Intergenic 101627 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_37929 chr4 9074561 9074717 + 21.61019 NA Intergenic HERVS71-int|LTR|ERV1 123162 NM_001040071 650293 Hs.535167 NM_001040071 LOC650293 - seven transmembrane helix receptor protein-coding 13-PTNLD9-TUMOR_peak_9079 chr11 12087806 12088074 + 21.61019 NA Intergenic MLT1F2|LTR|ERVL-MaLR -44183 NM_014632 9645 Hs.501928 NM_014632 HPRD:10085 MICAL2 MICAL-2|MICAL2PV1|MICAL2PV2 microtubule associated monooxygenase, calponin and LIM domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_53604 chr9 73517600 73517889 + 21.61019 NA intron (NM_001007471, intron 1 of 24) intron (NM_001007471, intron 1 of 24) -33770 NM_206945 80036 Hs.47288 NM_020952 HPRD:10605 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel, subfamily M, member 3 protein-coding 13-PTNLD9-TUMOR_peak_42779 chr5 156943054 156943388 + 21.60639 NA intron (NM_033274, intron 7 of 22) intron (NM_033274, intron 7 of 22) 56194 NM_001099287 348938 Hs.4285 NM_001099287 ENSG00000172548 NIPAL4 ARCI6|ICHTHYIN|ICHYN NIPA-like domain containing 4 protein-coding 13-PTNLD9-TUMOR_peak_19501 chr16 61835312 61835574 + 21.59005 NA intron (NM_001796, intron 7 of 11) L1PA2|LINE|L1 235296 NM_001796 1006 Hs.368322 NM_001796 HPRD:04306 CDH8 Nbla04261 cadherin 8, type 2 protein-coding 13-PTNLD9-TUMOR_peak_20025 chr16 87491451 87491661 + 21.57007 NA intron (NM_015144, intron 2 of 12) intron (NM_015144, intron 2 of 12) 33904 NM_015144 23174 Hs.156231 NM_015144 HPRD:18316 ZCCHC14 BDG-29|BDG29 zinc finger, CCHC domain containing 14 protein-coding 13-PTNLD9-TUMOR_peak_51942 chr8 127548774 127549090 + 21.57007 NA Intergenic Intergenic 21779 NM_174911 157638 Hs.741352 NM_174911 HPRD:11403 FAM84B BCMP101|NSE2 family with sequence similarity 84, member B protein-coding 13-PTNLD9-TUMOR_peak_23297 chr18 56209017 56209351 + 21.56816 NA intron (NM_052947, intron 4 of 12) intron (NM_052947, intron 4 of 12) 87005 NM_052947 115701 Hs.628152 NM_052947 HPRD:11019 ALPK2 HAK alpha-kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_13978 chr12 118123391 118123663 + 21.56422 NA intron (NM_173598, intron 4 of 19) intron (NM_173598, intron 4 of 19) 282501 NM_173598 283455 Hs.375836 NM_173598 HPRD:13952 KSR2 - kinase suppressor of ras 2 protein-coding 13-PTNLD9-TUMOR_peak_16750 chr15 20980781 20981351 + 21.56039 NA Intergenic CpG -19586 NR_027992 606 Hs.657985 NR_027992 NBEAP1 BCL8|BCL8A neurobeachin pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_21175 chr17 42664761 42664963 + 21.54992 NA Intergenic Intergenic 30050 NM_001466 2535 Hs.142912 NM_001466 FZD2 Fz2|fz-2|fzE2|hFz2 frizzled class receptor 2 protein-coding 13-PTNLD9-TUMOR_peak_43253 chr5 177777424 177777796 + 21.54944 NA intron (NM_173465, intron 2 of 28) intron (NM_173465, intron 2 of 28) -117787 NR_103509 85007 Hs.248746 NM_153373 HPRD:18482 PHYKPL AGXT2L2|PHLU 5-phosphohydroxy-L-lysine phospho-lyase protein-coding 13-PTNLD9-TUMOR_peak_14229 chr12 125179503 125179868 + 21.54944 NA Intergenic MLT1D|LTR|ERVL-MaLR -127675 NM_001206654 9612 Hs.137510 NM_006312 HPRD:02910 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 13-PTNLD9-TUMOR_peak_50242 chr8 21541421 21541806 + 21.54944 NA Intergenic Intergenic 104733 NM_001495 2675 Hs.441202 NM_001495 HPRD:11801 GFRA2 GDNFRB|NRTNR-ALPHA|NTNRA|RETL2|TRNR2 GDNF family receptor alpha 2 protein-coding 13-PTNLD9-TUMOR_peak_15798 chr14 54309731 54309940 + 21.54944 NA Intergenic Intergenic 105367 NR_049843 100847076 NR_049843 miRBase:MI0019135 MIR5580 - microRNA 5580 ncRNA 13-PTNLD9-TUMOR_peak_4089 chr1 160176322 160176503 + 21.54188 NA intron (NR_123725, intron 2 of 4) intron (NR_123725, intron 2 of 4) 1303 NR_123724 8682 Hs.517216 NM_003768 HPRD:04579 PEA15 HMAT1|HUMMAT1H|MAT1|MAT1H|PEA-15|PED phosphoprotein enriched in astrocytes 15 protein-coding 13-PTNLD9-TUMOR_peak_27084 chr2 65058484 65058809 + 21.52406 NA Intergenic Intergenic 32119 NR_110224 101927438 Hs.580313 NR_110224 LOC101927438 - uncharacterized LOC101927438 ncRNA 13-PTNLD9-TUMOR_peak_26619 chr2 38374070 38374249 + 21.52406 NA intron (NR_027252, intron 2 of 2) intron (NR_027252, intron 2 of 2) 15912 NR_027252 285154 Hs.353894 NM_173652 HPRD:14592 CYP1B1-AS1 C2orf58 CYP1B1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_44513 chr6 31093860 31094108 + 21.51960 NA intron (NM_014068, intron 2 of 5) intron (NM_014068, intron 2 of 5) -5732 NM_001264 1041 Hs.310958 NM_001264 HPRD:03998 CDSN D6S586E|HTSS|HTSS1|HYPT2|PSS|S corneodesmosin protein-coding 13-PTNLD9-TUMOR_peak_15832 chr14 55538673 55538904 + 21.51873 NA Intergenic Intergenic 20426 NM_144578 93487 Hs.594338 NM_144578 HPRD:12647 MAPK1IP1L C14orf32|MISS|c14_5346 mitogen-activated protein kinase 1 interacting protein 1-like protein-coding 13-PTNLD9-TUMOR_peak_41889 chr5 123744317 123744623 + 21.51873 NA intron (NR_125774, intron 3 of 5) intron (NR_125774, intron 3 of 5) 29743 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 13-PTNLD9-TUMOR_peak_48909 chr7 124569895 124570190 + 21.51873 NA promoter-TSS (NM_001042594) promoter-TSS (NM_001042594) -5 NR_003102 25913 Hs.31968 NM_015450 HPRD:07572 POT1 CMM10|HPOT1 protection of telomeres 1 protein-coding 13-PTNLD9-TUMOR_peak_35624 chr3 124120832 124121061 + 21.51873 NA intron (NM_001024660, intron 13 of 59) intron (NM_001024660, intron 13 of 59) 27767 NR_106731 102464832 NR_106731 MIR6083 hsa-mir-6083 microRNA 6083 ncRNA 13-PTNLD9-TUMOR_peak_46814 chr7 6116828 6117232 + 21.51786 NA Intergenic MLT1F|LTR|ERVL-MaLR -18170 NM_014413 27102 Hs.520205 NM_014413 HPRD:10684 EIF2AK1 HCR|HRI eukaryotic translation initiation factor 2-alpha kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_40123 chr5 47496 47787 + 21.51173 NA Intergenic Intergenic -92732 NM_052909 153478 Hs.535800 NM_052909 PLEKHG4B - pleckstrin homology domain containing, family G (with RhoGef domain) member 4B protein-coding 13-PTNLD9-TUMOR_peak_6882 chr10 32438169 32438536 + 21.50759 NA Intergenic Intergenic -92981 NM_004521 3799 Hs.327736 NM_004521 HPRD:07214 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 13-PTNLD9-TUMOR_peak_4901 chr1 200385102 200385314 + 21.50759 NA Intergenic Intergenic -6022 NM_012482 23528 Hs.59757 NM_012482 HPRD:11702 ZNF281 ZBP-99|ZNP-99 zinc finger protein 281 protein-coding 13-PTNLD9-TUMOR_peak_53917 chr9 91321154 91321790 + 21.50759 NA Intergenic Intergenic 39348 NR_036252 100423015 NR_036252 miRBase:MI0015898 MIR4289 - microRNA 4289 ncRNA 13-PTNLD9-TUMOR_peak_22663 chr18 13436010 13436232 + 21.48928 NA intron (NM_181482, intron 3 of 5) L2a|LINE|L2 -8588 NR_040031 100288122 Hs.646264 NR_040031 ENSG00000267690 LDLRAD4-AS1 - LDLRAD4 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_30625 chr20 23999560 23999737 + 21.48928 NA Intergenic Intergenic -30232 NM_178311 92086 Hs.355394 NM_080920 HPRD:17037 GGTLC1 GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2 gamma-glutamyltransferase light chain 1 protein-coding 13-PTNLD9-TUMOR_peak_39085 chr4 111455156 111455384 + 21.48863 NA intron (NM_001977, intron 11 of 19) intron (NM_001977, intron 11 of 19) 58041 NM_001977 2028 Hs.435765 NM_001977 ENPEP APA|CD249|gp160 glutamyl aminopeptidase (aminopeptidase A) protein-coding 13-PTNLD9-TUMOR_peak_32556 chr21 46302413 46302730 + 21.47557 NA Intergenic LTR26E|LTR|ERV1 -8753 NR_104597 754 Hs.474010 NM_004339 HPRD:04807 PTTG1IP C21orf1|C21orf3|PBF pituitary tumor-transforming 1 interacting protein protein-coding 13-PTNLD9-TUMOR_peak_34387 chr3 44690130 44690304 + 21.46583 NA promoter-TSS (NM_003420) promoter-TSS (NM_003420) -16 NM_003420 7584 Hs.288658 NM_003420 HPRD:01920 ZNF35 HF.10|HF10|Zfp105 zinc finger protein 35 protein-coding 13-PTNLD9-TUMOR_peak_1149 chr1 36839452 36839661 + 21.46435 NA intron (NM_032017, intron 1 of 11) intron (NM_032017, intron 1 of 11) 11972 NM_001282547 83931 Hs.471768 NM_032017 HPRD:11359 STK40 SHIK|SgK495 serine/threonine kinase 40 protein-coding 13-PTNLD9-TUMOR_peak_52194 chr8 134924506 134924849 + 21.45936 NA Intergenic L2c|LINE|L2 25938 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 13-PTNLD9-TUMOR_peak_49272 chr7 137346526 137346710 + 21.45936 NA intron (NM_004717, intron 3 of 33) intron (NM_004717, intron 3 of 33) 184991 NM_004717 9162 Hs.242947 NM_004717 HPRD:07238 DGKI DGK-IOTA diacylglycerol kinase, iota protein-coding 13-PTNLD9-TUMOR_peak_49116 chr7 131206644 131206931 + 21.45276 NA intron (NM_001018111, intron 1 of 8) L1MD3|LINE|L1 34589 NM_005397 5420 Hs.744213 NM_005397 HPRD:04025 PODXL Gp200|PC|PCLP|PCLP-1 podocalyxin-like protein-coding 13-PTNLD9-TUMOR_peak_29671 chr2 208103981 208104381 + 21.45102 NA intron (NR_110283, intron 2 of 3) intron (NR_110283, intron 2 of 3) 14859 NR_110283 101927865 Hs.574609 NR_110283 ENSG00000234902 LOC101927865 - uncharacterized LOC101927865 ncRNA 13-PTNLD9-TUMOR_peak_13822 chr12 110661644 110661899 + 21.44291 NA Intergenic Intergenic -57261 NM_001681 488 Hs.506759 NM_001681 HPRD:00161 ATP2A2 ATP2B|DAR|DD|SERCA2 ATPase, Ca++ transporting, cardiac muscle, slow twitch 2 protein-coding 13-PTNLD9-TUMOR_peak_44097 chr6 22321085 22321252 + 21.44291 NA Intergenic Intergenic -18086 NM_001163558 5617 Hs.1905 NM_000948 HPRD:07180 PRL - prolactin protein-coding 13-PTNLD9-TUMOR_peak_11659 chr11 130285674 130285912 + 21.43360 NA intron (NM_007037, intron 4 of 8) intron (NM_007037, intron 4 of 8) 12746 NM_007037 11095 Hs.271605 NM_007037 HPRD:05531 ADAMTS8 ADAM-TS8|METH2 ADAM metallopeptidase with thrombospondin type 1 motif, 8 protein-coding 13-PTNLD9-TUMOR_peak_19875 chr16 81270956 81271215 + 21.42772 NA Intergenic MER5B|DNA|hAT-Charlie -1211 NM_017429 53630 Hs.212172 NM_017429 HPRD:12042 BCO1 BCDO|BCDO1|BCMO|BCMO1|BCO beta-carotene oxygenase 1 protein-coding 13-PTNLD9-TUMOR_peak_19939 chr16 84565886 84566307 + 21.41876 NA Intergenic Intergenic -27808 NM_020947 57707 Hs.288274 NM_020947 TLDC1 KIAA1609 TBC/LysM-associated domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_36829 chr3 177534537 177534946 + 21.41876 NA promoter-TSS (NR_110826) promoter-TSS (NR_110826) 88 NR_110826 102724550 Hs.570526 NR_110826 LOC102724550 - uncharacterized LOC102724550 ncRNA 13-PTNLD9-TUMOR_peak_40950 chr5 56790549 56790801 + 21.41876 NA Intergenic MLT1H|LTR|ERVL-MaLR -12039 NM_001017992 345651 Hs.482167 NM_001017992 HPRD:18598 ACTBL2 ACT actin, beta-like 2 protein-coding 13-PTNLD9-TUMOR_peak_7704 chr10 73620264 73620643 + 21.41876 NA Intergenic Charlie4z|DNA|hAT-Charlie -9371 NM_001042466 5660 Hs.523004 NM_002778 HPRD:01460 PSAP GLBA|SAP1 prosaposin protein-coding 13-PTNLD9-TUMOR_peak_41256 chr5 72910920 72911278 + 21.41876 NA Intergenic Intergenic -10884 NM_001177693 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor (GEF) 28 protein-coding 13-PTNLD9-TUMOR_peak_18276 chr16 2885747 2886207 + 21.41876 NA Intergenic Intergenic 5804 NM_145252 124220 Hs.105887 NM_145252 HPRD:14024 ZG16B EECP|HRPE773|JCLN2|PAUF|PRO1567 zymogen granule protein 16B protein-coding 13-PTNLD9-TUMOR_peak_884 chr1 29211600 29211779 + 21.41876 NA Intergenic Intergenic -1914 NM_001166005 2035 Hs.175437 NM_004437 HPRD:00558 EPB41 4.1R|EL1|HE erythrocyte membrane protein band 4.1 protein-coding 13-PTNLD9-TUMOR_peak_14958 chr13 95908382 95908741 + 21.41876 NA intron (NM_001105515, intron 1 of 20) intron (NM_001105515, intron 1 of 20) 45126 NM_001105515 10257 Hs.508423 NM_005845 HPRD:05583 ABCC4 EST170205|MOAT-B|MOATB|MRP4 ATP-binding cassette, sub-family C (CFTR/MRP), member 4 protein-coding 13-PTNLD9-TUMOR_peak_47969 chr7 74408093 74408403 + 21.41876 NA Intergenic Intergenic 81469 NM_001281441 81554 Hs.529623 NM_030798 HPRD:15654 WBSCR16 - Williams-Beuren syndrome chromosome region 16 protein-coding 13-PTNLD9-TUMOR_peak_2224 chr1 77328254 77328470 + 21.41876 NA Intergenic L2a|LINE|L2 -4824 NM_030965 81849 Hs.303609 NM_030965 ST6GALNAC5 SIAT7E|ST6GalNAcV ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 protein-coding 13-PTNLD9-TUMOR_peak_19642 chr16 68790076 68790460 + 21.41790 NA intron (NM_004360, intron 2 of 15) intron (NM_004360, intron 2 of 15) 19073 NM_004360 999 Hs.461086 NM_004360 HPRD:01885 CDH1 Arc-1|CD324|CDHE|ECAD|LCAM|UVO cadherin 1, type 1, E-cadherin (epithelial) protein-coding 13-PTNLD9-TUMOR_peak_30778 chr20 31315550 31315779 + 21.39445 NA intron (NM_001099339, intron 3 of 8) intron (NM_001099339, intron 3 of 8) 16150 NM_001099339 149951 Hs.408427 NM_053041 HPRD:13085 COMMD7 C20orf92|dJ1085F17.3 COMM domain containing 7 protein-coding 13-PTNLD9-TUMOR_peak_49664 chr7 151097770 151098038 + 21.39445 NA intron (NM_001284262, intron 1 of 5) LTR43|LTR|ERV1 -8343 NR_034012 100131176 Hs.659231 NR_034012 ENSG00000243836 WDR86-AS1 - WDR86 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_49314 chr7 138620275 138620468 + 21.39209 NA intron (NM_001164665, intron 1 of 19) intron (NM_001164665, intron 1 of 19) 45693 NM_020910 57670 Hs.605380 NM_020910 ENSG00000122778 KIAA1549 - KIAA1549 protein-coding 13-PTNLD9-TUMOR_peak_37867 chr4 8102879 8103427 + 21.39209 NA intron (NM_001130085, intron 2 of 17) intron (NM_001130085, intron 2 of 17) -29410 NM_001286688 84448 Hs.233404 NM_032432 ENSG00000163995 ABLIM2 - actin binding LIM protein family, member 2 protein-coding 13-PTNLD9-TUMOR_peak_45125 chr6 44009307 44009552 + 21.39209 NA Intergenic Intergenic 41092 NM_153246 221416 Hs.531926 NM_153246 HPRD:14640 C6orf223 - chromosome 6 open reading frame 223 protein-coding 13-PTNLD9-TUMOR_peak_30558 chr20 19783158 19783541 + 21.38301 NA Intergenic Intergenic -83816 NM_001242581 54453 Hs.472270 NM_018993 HPRD:15249 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 13-PTNLD9-TUMOR_peak_30590 chr20 22429977 22430252 + 21.38301 NA Intergenic Intergenic -28833 NR_027089 284788 Hs.651993 NR_027089 ENSG00000204684 LOC284788 - uncharacterized LOC284788 ncRNA 13-PTNLD9-TUMOR_peak_21699 chr17 60170906 60171116 + 21.38301 NA Intergenic Intergenic -28368 NM_005121 9969 Hs.282678 NM_005121 HPRD:07229 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 13-PTNLD9-TUMOR_peak_44760 chr6 35265457 35265662 + 21.36785 NA promoter-TSS (NM_022047) promoter-TSS (NM_022047) -36 NM_022047 50619 Hs.15476 NM_022047 HPRD:10869 DEF6 IBP|SLAT|SWAP70L differentially expressed in FDCP 6 homolog (mouse) protein-coding 13-PTNLD9-TUMOR_peak_2051 chr1 64140100 64140296 + 21.36785 NA Intergenic Intergenic 51311 NM_001172818 5236 Hs.1869 NM_002633 HPRD:01389 PGM1 CDG1T|GSD14 phosphoglucomutase 1 protein-coding 13-PTNLD9-TUMOR_peak_44140 chr6 24743884 24744099 + 21.36785 NA Intergenic MLT1L|LTR|ERVL-MaLR -24588 NM_030939 81688 Hs.744857 NM_030939 C6orf62 Nbla00237|XTP12|dJ30M3.2 chromosome 6 open reading frame 62 protein-coding 13-PTNLD9-TUMOR_peak_3812 chr1 154854351 154854508 + 21.36721 NA Intergenic Intergenic -11675 NM_002249 3782 Hs.490765 NM_002249 HPRD:04283 KCNN3 KCa2.3|SK3|SKCA3|hSK3 potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3 protein-coding 13-PTNLD9-TUMOR_peak_56699 chrX 153339688 153340021 + 21.36721 NA intron (NM_001110792, intron 1 of 2) MLT1L|LTR|ERVL-MaLR 23334 NM_001110792 4204 Hs.200716 NM_004992 HPRD:02050 MECP2 AUTSX3|MRX16|MRX79|MRXS13|MRXSL|PPMX|RS|RTS|RTT methyl CpG binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_7456 chr10 61438667 61438902 + 21.36721 NA intron (NM_194298, intron 2 of 5) intron (NM_194298, intron 2 of 5) 30865 NM_194298 220963 Hs.499709 NM_194298 HPRD:15348 SLC16A9 C10orf36|MCT9 solute carrier family 16, member 9 protein-coding 13-PTNLD9-TUMOR_peak_10612 chr11 73710641 73710861 + 21.36721 NA TTS (NM_003356) TTS (NM_003356) 9531 NM_003356 7352 Hs.101337 NM_003356 HPRD:03623 UCP3 SLC25A9 uncoupling protein 3 (mitochondrial, proton carrier) protein-coding 13-PTNLD9-TUMOR_peak_12177 chr12 12956183 12956427 + 21.35925 NA Intergenic MLT1N2|LTR|ERVL-MaLR -9975 NM_016355 51202 Hs.719938 NM_016355 HPRD:10863 DDX47 E4-DBP|HQ0256|MSTP162|RRP3 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 protein-coding 13-PTNLD9-TUMOR_peak_6933 chr10 35294904 35295199 + 21.34957 NA Intergenic L2b|LINE|L2 68207 NM_001198779 8453 Hs.82919 NM_003591 HPRD:06786 CUL2 - cullin 2 protein-coding 13-PTNLD9-TUMOR_peak_25971 chr2 3474056 3474482 + 21.34957 NA intron (NM_016030, intron 9 of 11) intron (NM_016030, intron 9 of 11) 49081 NM_018269 55256 Hs.502773 NM_018269 HPRD:17607 ADI1 APL1|ARD|Fe-ARD|MTCBP1|Ni-ARD|SIPL|mtnD acireductone dioxygenase 1 protein-coding 13-PTNLD9-TUMOR_peak_33181 chr22 35985280 35985678 + 21.32979 NA Intergenic Intergenic 27905 NM_005368 4151 Hs.517586 NM_005368 HPRD:01170 MB PVALB|myoglobgin myoglobin protein-coding 13-PTNLD9-TUMOR_peak_13854 chr12 111355352 111355552 + 21.32979 NA intron (NM_000432, intron 2 of 6) intron (NM_000432, intron 2 of 6) 2952 NM_000432 4633 Hs.75535 NM_000432 HPRD:01181 MYL2 CMH10|MLC2 myosin, light chain 2, regulatory, cardiac, slow protein-coding 13-PTNLD9-TUMOR_peak_29621 chr2 205317263 205317678 + 21.32979 NA Intergenic MLT1J|LTR|ERVL-MaLR -93046 NM_152526 117583 Hs.657382 NM_057177 HPRD:09795 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3LC|PAR3beta|Par3Lb par-3 family cell polarity regulator beta protein-coding 13-PTNLD9-TUMOR_peak_6869 chr10 32229784 32230115 + 21.32979 NA Intergenic AmnSINE1|SINE|Deu -12145 NM_001270698 94134 Hs.499264 NM_018287 HPRD:06446 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 13-PTNLD9-TUMOR_peak_27928 chr2 106821164 106821346 + 21.32979 NA Intergenic Intergenic -10460 NM_025076 80146 Hs.469561 NM_025076 HPRD:15642 UXS1 SDR6E1|UGD UDP-glucuronate decarboxylase 1 protein-coding 13-PTNLD9-TUMOR_peak_50601 chr8 37183549 37183722 + 21.32979 NA Intergenic Intergenic 167796 NR_121620 100507420 Hs.105962 NR_121620 LOC100507420 - uncharacterized LOC100507420 ncRNA 13-PTNLD9-TUMOR_peak_26684 chr2 42360180 42360618 + 21.32462 NA Intergenic Intergenic -36091 NM_001145076 27436 Hs.713173 NM_019063 HPRD:06310 EML4 C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120 echinoderm microtubule associated protein like 4 protein-coding 13-PTNLD9-TUMOR_peak_34764 chr3 57991467 57991688 + 21.32044 NA Intergenic Intergenic -2550 NM_001457 2317 Hs.476448 NM_001457 HPRD:04543 FLNB ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP filamin B, beta protein-coding 13-PTNLD9-TUMOR_peak_16004 chr14 64342063 64342430 + 21.32035 NA intron (NM_182914, intron 1 of 115) intron (NM_182914, intron 1 of 115) 22563 NM_182914 23224 Hs.745014 NM_015180 HPRD:09763 SYNE2 EDMD5|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing, nuclear envelope 2 protein-coding 13-PTNLD9-TUMOR_peak_5905 chr1 234668853 234669153 + 21.30791 NA Intergenic Intergenic -1478 NR_038426 100506795 Hs.448989 NR_038426 ENSG00000231768 LINC01354 - long intergenic non-protein coding RNA 1354 ncRNA 13-PTNLD9-TUMOR_peak_2454 chr1 92035452 92035783 + 21.30789 NA Intergenic Intergenic 68952 NM_001134420 8317 Hs.533573 NM_003503 HPRD:10345 CDC7 CDC7L1|HsCDC7|Hsk1|huCDC7 cell division cycle 7 protein-coding 13-PTNLD9-TUMOR_peak_7142 chr10 43455996 43456189 + 21.30789 NA Intergenic Intergenic -36919 NR_049836 100847014 NR_049836 miRBase:MI0019116 MIR5100 - microRNA 5100 ncRNA 13-PTNLD9-TUMOR_peak_33907 chr3 14889229 14889751 + 21.30789 NA intron (NM_152536, intron 1 of 19) intron (NM_152536, intron 1 of 19) 29021 NM_152536 152273 Hs.412406 NM_152536 HPRD:13322 FGD5 ZFYVE23 FYVE, RhoGEF and PH domain containing 5 protein-coding 13-PTNLD9-TUMOR_peak_34868 chr3 66101600 66101944 + 21.30789 NA Intergenic MLT1J|LTR|ERVL-MaLR -17513 NM_173471 115286 Hs.379386 NM_173471 HPRD:15357 SLC25A26 SAMC solute carrier family 25 (S-adenosylmethionine carrier), member 26 protein-coding 13-PTNLD9-TUMOR_peak_12788 chr12 52164840 52165114 + 21.30789 NA intron (NM_014191, intron 19 of 26) intron (NM_014191, intron 19 of 26) 60724 NM_001013690 401720 Hs.648218 NM_001013690 FIGNL2 - fidgetin-like 2 protein-coding 13-PTNLD9-TUMOR_peak_3628 chr1 151558163 151558393 + 21.30669 NA Intergenic Intergenic -26384 NM_030918 81609 Hs.192326 NM_030918 HPRD:11591 SNX27 MRT1|MY014 sorting nexin family member 27 protein-coding 13-PTNLD9-TUMOR_peak_49438 chr7 142255641 142256324 + 21.30394 NA Intergenic Intergenic -118149 NM_001190487 100463482 NM_001190487 ENSG00000270672 MTRNR2L6 HN6 MT-RNR2-like 6 protein-coding 13-PTNLD9-TUMOR_peak_17669 chr15 75315795 75315978 + 21.30065 NA promoter-TSS (NM_001301103) promoter-TSS (NM_001301103) -10 NM_001301102 60490 Hs.458922 NM_021823 HPRD:14377 PPCDC PPC-DC|coaC phosphopantothenoylcysteine decarboxylase protein-coding 13-PTNLD9-TUMOR_peak_8460 chr10 121427288 121427520 + 21.30065 NA intron (NM_004281, intron 1 of 3) intron (NM_004281, intron 1 of 3) 16522 NM_004281 9531 Hs.523309 NM_004281 HPRD:04860 BAG3 BAG-3|BIS|CAIR-1|MFM6 BCL2-associated athanogene 3 protein-coding 13-PTNLD9-TUMOR_peak_26143 chr2 11850444 11850682 + 21.30065 NA intron (NM_001261428, intron 1 of 21) L4|LINE|RTE -13897 NM_001261427 23175 Hs.467740 NM_145693 HPRD:09271 LPIN1 PAP1 lipin 1 protein-coding 13-PTNLD9-TUMOR_peak_14781 chr13 52132246 52132414 + 21.30065 NA Intergenic Intergenic 5605 NR_039852 100616423 NR_039852 miRBase:MI0017336 MIR4703 - microRNA 4703 ncRNA 13-PTNLD9-TUMOR_peak_30904 chr20 34710360 34710537 + 21.30065 NA intron (NM_001258329, intron 2 of 22) intron (NM_001258329, intron 2 of 22) 29816 NM_177996 2036 Hs.437422 NM_012156 HPRD:04193 EPB41L1 4.1N|MRD11 erythrocyte membrane protein band 4.1-like 1 protein-coding 13-PTNLD9-TUMOR_peak_29080 chr2 172873672 172873922 + 21.30065 NA intron (NM_199227, intron 1 of 9) MER44D|DNA|TcMar-Tigger 8993 NM_199227 254042 Hs.298250 NM_199227 METAP1D MAP 1D|MAP1D|MetAP 1D|Metap1l methionyl aminopeptidase type 1D (mitochondrial) protein-coding 13-PTNLD9-TUMOR_peak_44001 chr6 18043536 18043691 + 21.30065 NA Intergenic Intergenic -55759 NM_001243423 63971 Hs.94499 NM_022113 HPRD:09256 KIF13A RBKIN|bA500C11.2 kinesin family member 13A protein-coding 13-PTNLD9-TUMOR_peak_16345 chr14 78088977 78089232 + 21.29113 NA Intergenic Intergenic -5994 NM_004863 9517 Hs.435661 NM_004863 HPRD:05755 SPTLC2 HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a serine palmitoyltransferase, long chain base subunit 2 protein-coding 13-PTNLD9-TUMOR_peak_30506 chr20 17575201 17575363 + 21.29113 NA intron (NM_001011546, intron 2 of 4) MLT1J1|LTR|ERVL-MaLR 24683 NM_001011546 11034 Hs.304192 NM_006870 HPRD:16446 DSTN ACTDP|ADF|HEL32|bA462D18.2 destrin (actin depolymerizing factor) protein-coding 13-PTNLD9-TUMOR_peak_12034 chr12 7106771 7107150 + 21.28254 NA intron (NM_005768, intron 1 of 12) MIR3|SINE|MIR 18882 NM_005768 10162 Hs.655248 NM_005768 HPRD:12816 LPCAT3 C3F|LPCAT|LPLAT 5|LPSAT|MBOAT5|OACT5|nessy lysophosphatidylcholine acyltransferase 3 protein-coding 13-PTNLD9-TUMOR_peak_10465 chr11 69794691 69794909 + 21.28254 NA Intergenic Intergenic 115230 NR_120530 101928443 Hs.313468 NR_120529 ENSG00000248844 LOC101928443 - uncharacterized LOC101928443 ncRNA 13-PTNLD9-TUMOR_peak_43427 chr6 1535633 1535878 + 21.28254 NA Intergenic Intergenic -70011 NR_125804 101927703 Hs.607964 NR_125804 FOXCUT LINC01379|TCONS_00011636 FOXC1 upstream transcript (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_29813 chr2 218687077 218687363 + 21.27981 NA intron (NM_022648, intron 22 of 32) intron (NM_022648, intron 22 of 32) -65904 NR_026597 729582 Hs.572788 NR_026597 ENSG00000231672 DIRC3 - disrupted in renal carcinoma 3 ncRNA 13-PTNLD9-TUMOR_peak_17838 chr15 83611533 83611784 + 21.27981 NA intron (NM_199330, intron 1 of 8) intron (NM_199330, intron 1 of 8) 9818 NM_004839 9455 Hs.578443 NM_004839 HPRD:07269 HOMER2 ACPD|CPD|HOMER-2|VESL-2 homer homolog 2 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_31570 chr20 52364782 52364990 + 21.27827 NA Intergenic LTR82A|LTR|ERVL 127362 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_17079 chr15 40631157 40631453 + 21.27098 NA intron (NM_207380, intron 3 of 10) intron (NM_207380, intron 3 of 10) 1863 NM_207380 388115 Hs.32433 NM_207380 HPRD:16964 C15orf52 - chromosome 15 open reading frame 52 protein-coding 13-PTNLD9-TUMOR_peak_44002 chr6 18053348 18053651 + 21.26582 NA Intergenic MIRc|SINE|MIR -65645 NM_001243423 63971 Hs.94499 NM_022113 HPRD:09256 KIF13A RBKIN|bA500C11.2 kinesin family member 13A protein-coding 13-PTNLD9-TUMOR_peak_9498 chr11 34285031 34285250 + 21.26582 NA intron (NM_145804, intron 1 of 16) intron (NM_145804, intron 1 of 16) 94415 NM_145804 25841 Hs.23361 NM_145804 HPRD:10624 ABTB2 ABTB2A|BTBD22 ankyrin repeat and BTB (POZ) domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_8903 chr11 5646042 5646262 + 21.26582 NA promoter-TSS (NM_021616) promoter-TSS (NM_021616) -55 NM_021616 53840 Hs.729048 NM_021616 HPRD:16141 TRIM34 IFP1|RNF21 tripartite motif containing 34 protein-coding 13-PTNLD9-TUMOR_peak_21162 chr17 42312957 42313215 + 21.25424 NA Intergenic Intergenic -14092 NR_045058 7343 Hs.89781 NM_014233 HPRD:02814 UBTF NOR-90|UBF|UBF-1|UBF1|UBF2 upstream binding transcription factor, RNA polymerase I protein-coding 13-PTNLD9-TUMOR_peak_50270 chr8 22068101 22068639 + 21.24881 NA intron (NR_033403, intron 19 of 19) intron (NR_033403, intron 19 of 19) 21481 NM_001099335 9796 Hs.334688 NM_014759 HPRD:16345 PHYHIP DYRK1AP3|PAHX-AP|PAHXAP1 phytanoyl-CoA 2-hydroxylase interacting protein protein-coding 13-PTNLD9-TUMOR_peak_36574 chr3 159516809 159517089 + 21.24849 NA intron (NM_014575, intron 2 of 7) intron (NM_014575, intron 2 of 7) -30548 NR_121669 100874433 Hs.601476 NR_121669 IQCJ-SCHIP1-AS1 uaz98 IQCJ-SCHIP1 readthrough antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_48579 chr7 100875542 100876009 + 21.23248 NA exon (NM_001185080, exon 6 of 6) exon (NM_001185080, exon 6 of 6) 5452 NM_014343 24146 Hs.38738 NM_014343 HPRD:13065 CLDN15 - claudin 15 protein-coding 13-PTNLD9-TUMOR_peak_9282 chr11 19737013 19737266 + 21.22501 NA promoter-TSS (NR_015384) promoter-TSS (NR_015384) -921 NR_015384 100126784 Hs.64341 NR_015384 LOC100126784 - uncharacterized LOC100126784 ncRNA 13-PTNLD9-TUMOR_peak_3964 chr1 156679702 156679875 + 21.22373 NA Intergenic Intergenic -4180 NM_001199723 1382 Hs.405662 NM_001878 HPRD:08353 CRABP2 CRABP-II|RBP6 cellular retinoic acid binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_27723 chr2 97093749 97094097 + 21.21860 NA Intergenic MER83B-int|LTR|ERV1 77199 NM_001285486 93082 Hs.149219 NM_001080535 HPRD:14296 NEURL3 LINCR neuralized E3 ubiquitin protein ligase 3 protein-coding 13-PTNLD9-TUMOR_peak_18419 chr16 6983043 6983340 + 21.21860 NA intron (NM_001142334, intron 1 of 13) L1MB3|LINE|L1 159381 NM_001142334 54715 Hs.459842 NM_018723 HPRD:16091 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding protein, fox-1 homolog (C. elegans) 1 protein-coding 13-PTNLD9-TUMOR_peak_35173 chr3 99370406 99370709 + 21.21860 NA intron (NM_020351, intron 1 of 3) intron (NM_020351, intron 1 of 3) 13117 NM_001850 1295 Hs.654548 NM_001850 HPRD:00372 COL8A1 C3orf7 collagen, type VIII, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_36133 chr3 139210235 139210412 + 21.21630 NA intron (NR_121609, intron 3 of 4) L1PB3|LINE|L1 -14971 NM_004164 5948 Hs.655516 NM_004164 HPRD:07184 RBP2 CRABP-II|CRBP2|CRBPII|RBPC2 retinol binding protein 2, cellular protein-coding 13-PTNLD9-TUMOR_peak_25221 chr19 47565553 47565751 + 21.21630 NA Intergenic MLT1C|LTR|ERVL-MaLR -13770 NM_017854 54958 Hs.105606 NM_017854 HPRD:07920 TMEM160 - transmembrane protein 160 protein-coding 13-PTNLD9-TUMOR_peak_32407 chr21 43239940 43240119 + 21.21630 NA exon (NM_001282934, exon 19 of 25) exon (NM_001282934, exon 19 of 25) 43382 NR_104260 63977 Hs.473893 NM_022115 HPRD:11458 PRDM15 C21orf83|PFM15|ZNF298 PR domain containing 15 protein-coding 13-PTNLD9-TUMOR_peak_15982 chr14 62394342 62394491 + 21.21630 NA Intergenic Intergenic -68125 NM_031914 83851 Hs.404139 NM_031914 HPRD:15461 SYT16 CHR14SYT|SYT14L|Strep14|syt14r|yt14r synaptotagmin XVI protein-coding 13-PTNLD9-TUMOR_peak_26603 chr2 37916306 37916648 + 21.21630 NA Intergenic Intergenic -16799 NM_001270436 10602 Hs.369574 NM_006449 HPRD:09364 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein (Rho GTPase binding) 3 protein-coding 13-PTNLD9-TUMOR_peak_45111 chr6 43828129 43828368 + 21.21630 NA Intergenic Intergenic -30517 NR_024478 100132354 Hs.376232 NR_024478 LINC01512 - long intergenic non-protein coding RNA 1512 ncRNA 13-PTNLD9-TUMOR_peak_3218 chr1 144030963 144031170 + 21.21219 NA Intergenic Intergenic -115745 NM_001278267 100288142 Hs.445080 NM_001278267 ENSG00000203832 NBPF20 - neuroblastoma breakpoint family, member 20 protein-coding 13-PTNLD9-TUMOR_peak_47985 chr7 74838025 74838335 + 21.21079 NA intron (NM_001145064, intron 1 of 8) intron (NM_001145064, intron 1 of 8) 29329 NM_001145064 729438 Hs.647031 NM_001145064 GATSL2 GATSL1 GATS protein-like 2 protein-coding 13-PTNLD9-TUMOR_peak_35338 chr3 111565572 111565901 + 21.21079 NA TTS (NM_153268) TTS (NM_153268) -12291 NM_001134438 90102 Hs.603252 NM_145753 HPRD:06611 PHLDB2 LL5b|LL5beta pleckstrin homology-like domain, family B, member 2 protein-coding 13-PTNLD9-TUMOR_peak_12180 chr12 12972978 12973258 + 21.21079 NA intron (NM_201224, intron 2 of 10) intron (NM_201224, intron 2 of 10) 6838 NM_201224 51202 Hs.719938 NM_016355 HPRD:10863 DDX47 E4-DBP|HQ0256|MSTP162|RRP3 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 protein-coding 13-PTNLD9-TUMOR_peak_9358 chr11 27231191 27231498 + 21.20213 NA intron (NR_125767, intron 2 of 4) intron (NR_125767, intron 2 of 4) 8971 NR_125768 103695435 Hs.196133 NR_125766 BBOX1-AS1 - BBOX1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_16118 chr14 69044628 69044910 + 21.20213 NA intron (NM_133509, intron 10 of 10) intron (NM_133509, intron 10 of 10) 215862 NM_004926 677 Hs.85155 NM_004926 HPRD:03041 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein-like 1 protein-coding 13-PTNLD9-TUMOR_peak_44740 chr6 34687566 34687982 + 21.20213 NA Intergenic LTR5_Hs|LTR|ERVK -23147 NM_022758 64771 Hs.643498 NM_022758 HPRD:12837 C6orf106 FP852|dJ391O22.4 chromosome 6 open reading frame 106 protein-coding 13-PTNLD9-TUMOR_peak_1336 chr1 41410090 41410345 + 21.20213 NA Intergenic MIRb|SINE|MIR -34754 NR_125440 1503 Hs.473087 NM_001905 HPRD:00465 CTPS1 CTPS|IMD24 CTP synthase 1 protein-coding 13-PTNLD9-TUMOR_peak_27747 chr2 97498504 97498692 + 21.20213 NA 3' UTR (NM_017623, exon 8 of 8) 3' UTR (NM_017623, exon 8 of 8) 11160 NM_144994 200539 Hs.643430 NM_144994 HPRD:12462 ANKRD23 DARP|MARP3 ankyrin repeat domain 23 protein-coding 13-PTNLD9-TUMOR_peak_4934 chr1 201235947 201236178 + 21.18899 NA Intergenic Intergenic -16518 NM_001005337 5317 Hs.497350 NM_000299 HPRD:03579 PKP1 B6P plakophilin 1 protein-coding 13-PTNLD9-TUMOR_peak_50752 chr8 42360533 42360790 + 21.18899 NA intron (NM_006749, intron 1 of 10) intron (NM_006749, intron 1 of 10) -1683 NM_001257180 6575 Hs.653173 NM_006749 HPRD:08865 SLC20A2 GLVR-2|GLVR2|IBGC1|IBGC3|MLVAR|PIT-2|PIT2|RAM1 solute carrier family 20 (phosphate transporter), member 2 protein-coding 13-PTNLD9-TUMOR_peak_373 chr1 10556089 10556328 + 21.18899 NA intron (NM_004565, intron 2 of 8) intron (NM_004565, intron 2 of 8) 21205 NM_004565 5195 Hs.149983 NM_004565 HPRD:03477 PEX14 NAPP2|PBD13A|Pex14p|dJ734G22.2 peroxisomal biogenesis factor 14 protein-coding 13-PTNLD9-TUMOR_peak_35516 chr3 120154438 120154725 + 21.18899 NA intron (NM_007085, intron 2 of 10) intron (NM_007085, intron 2 of 10) 15337 NM_007085 11167 Hs.269512 NM_007085 FSTL1 FRP|FSL1|MIR198 follistatin-like 1 protein-coding 13-PTNLD9-TUMOR_peak_49718 chr7 152285516 152285760 + 21.18411 NA Intergenic Intergenic 87612 NM_005431 7516 Hs.647093 NM_005431 HPRD:02656 XRCC2 - X-ray repair complementing defective repair in Chinese hamster cells 2 protein-coding 13-PTNLD9-TUMOR_peak_9523 chr11 34702828 34703047 + 21.17325 NA Intergenic Intergenic 48926 NM_001206616 26298 Hs.653859 NM_012153 EHF ESE3|ESE3B|ESEJ ets homologous factor protein-coding 13-PTNLD9-TUMOR_peak_18575 chr16 14493216 14493684 + 21.17215 NA Intergenic Intergenic 90308 NR_029854 100126355 NR_029854 miRBase:MI0000767 MIR365A MIR365-1|MIRN365-1|hsa-mir-365a microRNA 365a ncRNA 13-PTNLD9-TUMOR_peak_27833 chr2 101397117 101397484 + 21.17215 NA Intergenic Intergenic -39313 NM_002518 4862 Hs.156832 NM_002518 HPRD:09137 NPAS2 MOP4|PASD4|bHLHe9 neuronal PAS domain protein 2 protein-coding 13-PTNLD9-TUMOR_peak_18345 chr16 4186186 4186823 + 21.14999 NA Intergenic Intergenic -20318 NM_001116 115 Hs.391860 NM_001116 HPRD:04489 ADCY9 AC9 adenylate cyclase 9 protein-coding 13-PTNLD9-TUMOR_peak_33038 chr22 28114217 28114511 + 21.14207 NA Intergenic Intergenic 83122 NM_002430 4330 Hs.268515 NM_002430 HPRD:08862 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 meningioma (disrupted in balanced translocation) 1 protein-coding 13-PTNLD9-TUMOR_peak_31031 chr20 38478330 38478676 + 21.14207 NA Intergenic Intergenic -154600 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 - long intergenic non-protein coding RNA 1370 ncRNA 13-PTNLD9-TUMOR_peak_25420 chr19 50507265 50507533 + 21.14207 NA intron (NM_001025778, intron 4 of 13) intron (NM_001025778, intron 4 of 13) 21406 NM_016440 51231 Hs.443330 NM_016440 HPRD:18289 VRK3 - vaccinia related kinase 3 protein-coding 13-PTNLD9-TUMOR_peak_37176 chr3 189231168 189231334 + 21.14207 NA Intergenic Intergenic -117965 NM_001114978 8626 Hs.137569 NM_003722 HPRD:04469 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 13-PTNLD9-TUMOR_peak_1052 chr1 34665587 34665886 + 21.14207 NA intron (NM_032884, intron 2 of 6) intron (NM_032884, intron 2 of 6) 23183 NM_001134734 84970 Hs.194610 NM_032884 HPRD:11310 C1orf94 - chromosome 1 open reading frame 94 protein-coding 13-PTNLD9-TUMOR_peak_44992 chr6 41734958 41735235 + 21.14184 NA Intergenic MIR3|SINE|MIR 12547 NM_006653 10817 Hs.194208 NM_006653 HPRD:06373 FRS3 FRS2-beta|FRS2B|FRS2beta|SNT-2|SNT2 fibroblast growth factor receptor substrate 3 protein-coding 13-PTNLD9-TUMOR_peak_53015 chr9 33101654 33101856 + 21.13867 NA Intergenic Intergenic -25041 NM_018225 55234 Hs.655351 NM_018225 HPRD:11588 SMU1 BWD|SMU-1|fSAP57 smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans) protein-coding 13-PTNLD9-TUMOR_peak_264 chr1 8181467 8181681 + 21.13789 NA Intergenic Intergenic -95181 NM_018948 54206 Hs.605445 NM_018948 HPRD:09218 ERRFI1 GENE-33|MIG-6|MIG6|RALT ERBB receptor feedback inhibitor 1 protein-coding 13-PTNLD9-TUMOR_peak_40158 chr5 759248 759468 + 21.13037 NA Intergenic Intergenic -65848 NM_007030 11076 Hs.481466 NM_007030 HPRD:18522 TPPP TPPP/p25|TPPP1|p24|p25|p25alpha tubulin polymerization promoting protein protein-coding 13-PTNLD9-TUMOR_peak_11527 chr11 125170780 125171038 + 21.13037 NA intron (NM_022062, intron 2 of 12) MIR3|SINE|MIR 136350 NM_022062 63876 Hs.278564 NM_022062 HPRD:17857 PKNOX2 PREP2 PBX/knotted 1 homeobox 2 protein-coding 13-PTNLD9-TUMOR_peak_1425 chr1 43406692 43406980 + 21.11948 NA intron (NM_006516, intron 2 of 9) intron (NM_006516, intron 2 of 9) -17884 NR_033967 440584 Hs.260928 NR_033967 ENSG00000227533 SLC2A1-AS1 - SLC2A1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_35288 chr3 108523264 108523700 + 21.11721 NA Intergenic Intergenic -18149 NM_016388 50852 Hs.138701 NM_016388 HPRD:05392 TRAT1 TCRIM|TRIM T cell receptor associated transmembrane adaptor 1 protein-coding 13-PTNLD9-TUMOR_peak_21493 chr17 48997100 48997364 + 21.11721 NA Intergenic Intergenic -51893 NM_001243877 10140 Hs.703321 NM_005749 HPRD:09273 TOB1 APRO6|PIG49|TOB|TROB|TROB1 transducer of ERBB2, 1 protein-coding 13-PTNLD9-TUMOR_peak_14251 chr12 125412928 125413319 + 21.11196 NA Intergenic CpG 13030 NR_049820 100847004 NR_049820 miRBase:MI0018167 MIR5188 - microRNA 5188 ncRNA 13-PTNLD9-TUMOR_peak_21491 chr17 48961895 48962098 + 21.09895 NA Intergenic Intergenic -16657 NM_001243877 10140 Hs.703321 NM_005749 HPRD:09273 TOB1 APRO6|PIG49|TOB|TROB|TROB1 transducer of ERBB2, 1 protein-coding 13-PTNLD9-TUMOR_peak_2952 chr1 115677711 115678059 + 21.09895 NA Intergenic Intergenic -45764 NM_005725 10100 Hs.310458 NM_005725 HPRD:18233 TSPAN2 NET3|TSN2|TSPAN-2 tetraspanin 2 protein-coding 13-PTNLD9-TUMOR_peak_36005 chr3 134045662 134046078 + 21.08470 NA Intergenic Intergenic 40834 NR_106885 102466744 NR_106885 MIR6827 hsa-mir-6827 microRNA 6827 ncRNA 13-PTNLD9-TUMOR_peak_9256 chr11 19049813 19050035 + 21.08263 NA Intergenic MER54A|LTR|ERVL 32304 NM_054030 117194 Hs.350566 NM_054030 HPRD:06247 MRGPRX2 MGRG3|MRGX2 MAS-related GPR, member X2 protein-coding 13-PTNLD9-TUMOR_peak_51460 chr8 102822115 102822283 + 21.08263 NA intron (NM_001040628, intron 4 of 7) intron (NM_001040628, intron 4 of 7) -18760 NM_032041 83988 Hs.492427 NM_032041 HPRD:09466 NCALD - neurocalcin delta protein-coding 13-PTNLD9-TUMOR_peak_54953 chr9 135089429 135089729 + 21.08263 NA intron (NM_032536, intron 3 of 7) intron (NM_032536, intron 3 of 7) 52245 NM_032536 84628 Hs.163642 NM_032536 HPRD:17650 NTNG2 LHLL9381|Lmnt2|NTNG1|bA479K20.1 netrin G2 protein-coding 13-PTNLD9-TUMOR_peak_14676 chr13 43843328 43843601 + 21.08263 NA intron (NM_001127615, intron 13 of 16) intron (NM_001127615, intron 13 of 16) 156163 NR_047013 100874159 Hs.633241 NR_047013 LINC00400 - long intergenic non-protein coding RNA 400 ncRNA 13-PTNLD9-TUMOR_peak_34993 chr3 73621653 73621898 + 21.08263 NA intron (NM_015009, intron 3 of 9) intron (NM_015009, intron 3 of 9) -50944 NR_046681 101927249 Hs.733334 NR_046681 PDZRN3-AS1 - PDZRN3 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_54196 chr9 101250961 101251168 + 21.08263 NA intron (NM_005458, intron 4 of 18) intron (NM_005458, intron 4 of 18) 220415 NM_005458 9568 Hs.198612 NM_005458 HPRD:09552 GABBR2 GABABR2|GPR51|GPRC3B|HG20|HRIHFB2099 gamma-aminobutyric acid (GABA) B receptor, 2 protein-coding 13-PTNLD9-TUMOR_peak_14970 chr13 97793952 97794124 + 21.08263 NA Intergenic Intergenic 37838 NR_125725 103625683 Hs.679591 NR_125725 LINC00456 - long intergenic non-protein coding RNA 456 ncRNA 13-PTNLD9-TUMOR_peak_53166 chr9 36625318 36625551 + 21.08263 NA intron (NM_001256690, intron 6 of 15) intron (NM_001256690, intron 6 of 15) 52575 NR_046337 9833 Hs.184339 NM_014791 HPRD:06119 MELK HPK38 maternal embryonic leucine zipper kinase protein-coding 13-PTNLD9-TUMOR_peak_52860 chr9 19660118 19660306 + 21.08263 NA intron (NM_020344, intron 1 of 9) intron (NM_020344, intron 1 of 9) 126805 NM_001193288 25769 Hs.283014 NM_020344 HPRD:15351 SLC24A2 NCKX2 solute carrier family 24 (sodium/potassium/calcium exchanger), member 2 protein-coding 13-PTNLD9-TUMOR_peak_34388 chr3 44771000 44771218 + 21.08263 NA promoter-TSS (NM_145044) promoter-TSS (NM_145044) 11 NM_001258280 115560 Hs.401045 NM_145044 HPRD:15809 ZNF501 ZNF|ZNF52 zinc finger protein 501 protein-coding 13-PTNLD9-TUMOR_peak_30302 chr20 2821283 2821426 + 21.08263 NA promoter-TSS (NM_022760) promoter-TSS (NM_022760) -6 NM_022760 64773 Hs.29341 NM_022760 HPRD:12786 PCED1A C20orf81|FAM113A|bA12M19.1 PC-esterase domain containing 1A protein-coding 13-PTNLD9-TUMOR_peak_41780 chr5 113512181 113512430 + 21.08263 NA Intergenic Intergenic -185711 NM_021614 3781 Hs.98280 NM_021614 HPRD:09323 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2 protein-coding 13-PTNLD9-TUMOR_peak_54383 chr9 111631615 111631773 + 21.08263 NA intron (NM_003640, intron 36 of 36) intron (NM_003640, intron 36 of 36) 7186 NM_006687 10881 Hs.123530 NM_006687 HPRD:11976 ACTL7A - actin-like 7A protein-coding 13-PTNLD9-TUMOR_peak_10776 chr11 80349405 80349630 + 21.08263 NA Intergenic LTR16A|LTR|ERVL 124329 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LOC101928944 - uncharacterized LOC101928944 ncRNA 13-PTNLD9-TUMOR_peak_43538 chr6 3523233 3523419 + 21.07660 NA Intergenic Intergenic -66533 NM_015482 63027 Hs.713588 NM_015482 HPRD:12904 SLC22A23 C6orf85 solute carrier family 22, member 23 protein-coding 13-PTNLD9-TUMOR_peak_24401 chr19 18475804 18476176 + 21.07588 NA 3' UTR (NM_017712, exon 5 of 5) 3' UTR (NM_017712, exon 5 of 5) -20978 NM_004864 9518 Hs.616962 NM_004864 HPRD:05608 GDF15 GDF-15|MIC-1|MIC1|NAG-1|PDF|PLAB|PTGFB growth differentiation factor 15 protein-coding 13-PTNLD9-TUMOR_peak_27071 chr2 64680393 64680603 + 21.07588 NA promoter-TSS (NM_014181) promoter-TSS (NM_014181) -829 NM_014181 29094 Hs.372208 NM_014181 HPRD:13708 LGALSL GRP lectin, galactoside-binding-like protein-coding 13-PTNLD9-TUMOR_peak_49351 chr7 139434356 139434536 + 21.07531 NA intron (NM_022740, intron 1 of 14) intron (NM_022740, intron 1 of 14) 43247 NM_022740 28996 Hs.731417 NM_022740 HPRD:06039 HIPK2 PRO0593 homeodomain interacting protein kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_45224 chr6 47015326 47015463 + 21.07507 NA Intergenic Intergenic -5312 NM_153840 266977 Hs.733762 NM_025048 HPRD:08661 GPR110 KPG_012|PGR19|hGPCR36 G protein-coupled receptor 110 protein-coding 13-PTNLD9-TUMOR_peak_15677 chr14 49978946 49979449 + 21.07507 NA Intergenic Intergenic 73937 NM_001032 6235 Hs.156367 NM_001032 HPRD:04698 RPS29 DBA13|S29 ribosomal protein S29 protein-coding 13-PTNLD9-TUMOR_peak_9459 chr11 33578938 33579180 + 21.07507 NA intron (NM_012194, intron 5 of 19) intron (NM_012194, intron 5 of 19) 15182 NM_012194 25758 Hs.502266 NM_012194 ENSG00000110427 KIAA1549L C11orf41|C11orf69|G2 KIAA1549-like protein-coding 13-PTNLD9-TUMOR_peak_37959 chr4 9708879 9709129 + 21.07247 NA Intergenic Intergenic -74254 NM_000798 1816 Hs.380681 NM_000798 HPRD:00542 DRD5 DBDR|DRD1B|DRD1L2 dopamine receptor D5 protein-coding 13-PTNLD9-TUMOR_peak_34005 chr3 18140556 18140801 + 21.06924 NA intron (NM_001257177, intron 4 of 4) intron (NM_001257177, intron 4 of 4) 136614 NM_001257177 339862 Hs.652981 NM_001257177 LOC339862 - uncharacterized LOC339862 protein-coding 13-PTNLD9-TUMOR_peak_46492 chr6 162864219 162864439 + 21.06924 NA intron (NM_004562, intron 2 of 11) intron (NM_004562, intron 2 of 11) -283835 NM_001080378 135138 Hs.25791 NM_152410 HPRD:07465 PACRG GLUP|HAK005771|PARK2CRG PARK2 co-regulated protein-coding 13-PTNLD9-TUMOR_peak_36208 chr3 141405667 141405937 + 21.06341 NA Intergenic MLT1K|LTR|ERVL-MaLR -51249 NM_014245 9616 Hs.134623 NM_014245 RNF7 CKBBP1|ROC2|SAG ring finger protein 7 protein-coding 13-PTNLD9-TUMOR_peak_32970 chr22 25046942 25047103 + 21.06199 NA intron (NR_024593, intron 2 of 5) intron (NR_024593, intron 2 of 5) 8092 NR_024593 646074 Hs.531306 NM_001025230 ENSG00000224124 POM121L10P - POM121 transmembrane nucleoporin-like 10, pseudogene pseudo 13-PTNLD9-TUMOR_peak_32188 chr21 35134046 35134296 + 21.05836 NA intron (NM_003024, intron 8 of 39) intron (NM_003024, intron 8 of 39) 119387 NM_003024 6453 Hs.160324 NM_003024 HPRD:03898 ITSN1 ITSN|SH3D1A|SH3P17 intersectin 1 (SH3 domain protein) protein-coding 13-PTNLD9-TUMOR_peak_22368 chr17 80749423 80749754 + 21.05836 NA intron (NM_005993, intron 7 of 38) intron (NM_005993, intron 7 of 38) 39648 NM_005993 6904 Hs.464391 NM_005993 HPRD:05227 TBCD SSD-1|tfcD tubulin folding cofactor D protein-coding 13-PTNLD9-TUMOR_peak_15125 chr13 111560948 111561274 + 21.05836 NA intron (NR_104587, intron 2 of 6) intron (NR_104587, intron 2 of 6) 6343 NM_017664 55608 Hs.525163 NM_017664 HPRD:12455 ANKRD10 - ankyrin repeat domain 10 protein-coding 13-PTNLD9-TUMOR_peak_2144 chr1 68267643 68267912 + 21.05836 NA intron (NM_018841, intron 1 of 3) intron (NM_018841, intron 1 of 3) -30194 NR_040077 100289178 Hs.677603 NR_040077 ENSG00000232284 GNG12-AS1 - GNG12 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_42907 chr5 167715347 167715626 + 21.05449 NA Intergenic Intergenic -3579 NM_001161661 23286 Hs.484047 NM_015238 HPRD:10033 WWC1 HBEBP3|HBEBP36|KIBRA|MEMRYQTL|PPP1R168 WW and C2 domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_24916 chr19 39261548 39261821 + 21.05012 NA TTS (NM_002307) TTS (NM_002307) 2473 NM_002307 3963 Hs.702546 NM_002307 HPRD:09002 LGALS7 GAL7|LGALS7A lectin, galactoside-binding, soluble, 7 protein-coding 13-PTNLD9-TUMOR_peak_13182 chr12 65930466 65931053 + 21.04937 NA intron (NR_120432, intron 4 of 4) intron (NR_120432, intron 4 of 4) 105393 NR_120433 100507065 Hs.591038 NR_120431 ENSG00000250748 LOC100507065 - uncharacterized LOC100507065 ncRNA 13-PTNLD9-TUMOR_peak_30441 chr20 12897406 12897712 + 21.04250 NA intron (NR_109868, intron 6 of 11) intron (NR_109868, intron 6 of 11) 20052 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 13-PTNLD9-TUMOR_peak_27248 chr2 71873134 71873408 + 21.04250 NA intron (NM_003494, intron 41 of 54) intron (NM_003494, intron 41 of 54) 179439 NM_001130987 8291 Hs.252180 NM_003494 HPRD:04307 DYSF FER1L1|LGMD2B|MMD1 dysferlin protein-coding 13-PTNLD9-TUMOR_peak_14236 chr12 125231966 125232245 + 21.02054 NA Intergenic Intergenic 116414 NM_005505 949 Hs.731377 NM_005505 HPRD:03024 SCARB1 CD36L1|CLA-1|CLA1|HDLQTL6|SR-BI|SRB1 scavenger receptor class B, member 1 protein-coding 13-PTNLD9-TUMOR_peak_16764 chr15 21987449 21988062 + 21.02054 NA Intergenic CpG 29123 NR_024387 646243 Hs.720910 NR_024387 CXADRP2 - coxsackie virus and adenovirus receptor pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_7640 chr10 72147106 72147613 + 21.01393 NA Intergenic Intergenic -4953 NM_001278211 55222 Hs.7778 NM_018205 HPRD:14314 LRRC20 - leucine rich repeat containing 20 protein-coding 13-PTNLD9-TUMOR_peak_41374 chr5 77826239 77826598 + 21.01393 NA intron (NM_005779, intron 3 of 4) intron (NM_005779, intron 3 of 4) 118230 NM_005779 10184 Hs.79299 NM_005779 HPRD:17272 LHFPL2 - lipoma HMGIC fusion partner-like 2 protein-coding 13-PTNLD9-TUMOR_peak_22602 chr18 11500445 11500747 + 21.01393 NA intron (NR_110778, intron 1 of 2) intron (NR_110778, intron 1 of 2) 10549 NR_110778 101927433 Hs.331210 NR_110778 ENSG00000267252 LINC01255 - long intergenic non-protein coding RNA 1255 ncRNA 13-PTNLD9-TUMOR_peak_39404 chr4 139772861 139773069 + 21.01387 NA Intergenic Intergenic -163948 NM_012118 25819 Hs.639842 NM_012118 HPRD:16337 CCRN4L CCR4L|Ccr4c|NOC CCR4 carbon catabolite repression 4-like (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_51417 chr8 101859509 101859910 + 21.01387 NA Intergenic Intergenic 103090 NM_001135702 7534 Hs.492407 NM_003406 HPRD:03183 YWHAZ 14-3-3-zeta|HEL-S-3|HEL4|KCIP-1|YWHAD tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta protein-coding 13-PTNLD9-TUMOR_peak_31077 chr20 39806331 39806560 + 21.01387 NA TTS (NM_015035) TTS (NM_015035) 8782 NR_106931 102466912 NR_106931 MIR6871 hsa-mir-6871 microRNA 6871 ncRNA 13-PTNLD9-TUMOR_peak_23123 chr18 46074436 46074647 + 21.01387 NA intron (NM_001142397, intron 2 of 12) intron (NM_001142397, intron 2 of 12) 9114 NM_001142397 9811 Hs.145230 NM_014772 HPRD:11083 CTIF Gm672|KIAA0427 CBP80/20-dependent translation initiation factor protein-coding 13-PTNLD9-TUMOR_peak_43498 chr6 3024116 3024334 + 21.00899 NA non-coding (NR_033884, exon 1 of 1) non-coding (NR_033884, exon 1 of 1) 780 NR_033884 401233 Hs.441039 NM_001013680 HTATSF1P2 - HIV-1 Tat specific factor 1 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_44086 chr6 21856784 21856997 + 21.00805 NA intron (NR_015410, intron 4 of 11) MLT1E3|LTR|ERVL-MaLR 190215 NR_015410 401237 Hs.712707 NR_015410 ENSG00000272168 CASC15 LINC00340 cancer susceptibility candidate 15 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_48941 chr7 127391124 127391497 + 20.99834 NA intron (NM_014390, intron 10 of 23) intron (NM_014390, intron 10 of 23) 99108 NM_014390 27044 Hs.122523 NM_014390 HPRD:03714 SND1 TDRD11|p100 staphylococcal nuclease and tudor domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_44771 chr6 35368842 35369037 + 20.99638 NA intron (NM_001171818, intron 3 of 8) MIR3|SINE|MIR -51199 NM_021922 2178 Hs.302003 NM_021922 HPRD:02943 FANCE FACE|FAE Fanconi anemia, complementation group E protein-coding 13-PTNLD9-TUMOR_peak_37231 chr3 191074487 191074963 + 20.99638 NA intron (NM_174908, intron 1 of 10) intron (NM_174908, intron 1 of 10) -26400 NM_198152 257313 Hs.518492 NM_198152 HPRD:15630 UTS2B U2B|URP|UTS2D urotensin 2B protein-coding 13-PTNLD9-TUMOR_peak_12144 chr12 11948892 11949129 + 20.99638 NA intron (NR_046487, intron 2 of 3) intron (NR_046487, intron 2 of 3) 130097 NR_046487 100873754 NR_046487 ENSG00000207449 RNU6-19P RNU6-19 RNA, U6 small nuclear 19, pseudogene snRNA 13-PTNLD9-TUMOR_peak_28734 chr2 152526392 152526579 + 20.99638 NA intron (NM_001164508, intron 38 of 181) L2b|LINE|L2 64516 NM_001164508 4703 Hs.588655 NM_004543 HPRD:01196 NEB NEB177D|NEM2 nebulin protein-coding 13-PTNLD9-TUMOR_peak_26435 chr2 28731227 28731613 + 20.99638 NA intron (NM_001170585, intron 1 of 56) intron (NM_001170585, intron 1 of 56) 12482 NM_153021 151056 Hs.444933 NM_153021 HPRD:15141 PLB1 PLB|PLB/LIP|hPLB phospholipase B1 protein-coding 13-PTNLD9-TUMOR_peak_46968 chr7 18548503 18549082 + 20.98024 NA promoter-TSS (NM_001204147) promoter-TSS (NM_001204147) -108 NM_001204147 9734 Hs.196054 NM_014707 HPRD:05944 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 13-PTNLD9-TUMOR_peak_23237 chr18 53500855 53501125 + 20.97827 NA Intergenic Intergenic 86440 NR_110755 101927273 Hs.434335 NR_110755 ENSG00000260930 LOC101927273 - uncharacterized LOC101927273 ncRNA 13-PTNLD9-TUMOR_peak_42436 chr5 142413429 142413703 + 20.97827 NA intron (NM_015071, intron 12 of 22) L1MB7|LINE|L1 -165091 NR_046680 100874239 Hs.570896 NR_046680 ENSG00000226272 ARHGAP26-AS1 - ARHGAP26 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_1220 chr1 38892926 38893151 + 20.97827 NA Intergenic HERVH-int|LTR|ERV1 -212599 NR_038928 339442 Hs.434245 NR_038928 ENSG00000237290 LINC01343 - long intergenic non-protein coding RNA 1343 ncRNA 13-PTNLD9-TUMOR_peak_40272 chr5 9380303 9380526 + 20.97827 NA intron (NM_003966, intron 2 of 22) intron (NM_003966, intron 2 of 22) -131031 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 CTD-2201E9.1 - uncharacterized LOC101929338 ncRNA 13-PTNLD9-TUMOR_peak_31856 chr21 9594596 9595402 + 20.95880 NA Intergenic HERVL-int|LTR|ERVL -230833 NR_037421 100500862 NR_037421 MIR3648-1 MIR3648 microRNA 3648-1 ncRNA 13-PTNLD9-TUMOR_peak_53102 chr9 35103111 35103384 + 20.95561 NA promoter-TSS (NM_013442) promoter-TSS (NM_013442) -55 NM_001287031 30968 Hs.3439 NM_013442 HPRD:16310 STOML2 SLP-2 stomatin (EPB72)-like 2 protein-coding 13-PTNLD9-TUMOR_peak_24266 chr19 16254351 16254573 + 20.95561 NA non-coding (NR_111904, exon 3 of 6) non-coding (NR_111904, exon 3 of 6) 9624 NR_111904 84941 Hs.631617 NM_032855 HPRD:12219 HSH2D ALX|HSH2 hematopoietic SH2 domain containing protein-coding 13-PTNLD9-TUMOR_peak_33320 chr22 41107624 41107875 + 20.95433 NA Intergenic LTR81A|LTR|Gypsy 32567 NM_005297 2847 Hs.248122 NM_005297 HPRD:11874 MCHR1 GPR24|MCH-1R|MCH1R|SLC-1|SLC1 melanin-concentrating hormone receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_42425 chr5 142024544 142024941 + 20.95433 NA promoter-TSS (NM_001257210) promoter-TSS (NM_001257210) -876 NM_001257210 2246 Hs.483635 NM_000800 HPRD:00567 FGF1 AFGF|ECGF|ECGF-beta|ECGFA|ECGFB|FGF-1|FGF-alpha|FGFA|GLIO703|HBGF-1|HBGF1 fibroblast growth factor 1 (acidic) protein-coding 13-PTNLD9-TUMOR_peak_29940 chr2 227448491 227448697 + 20.95433 NA Intergenic Intergenic 74915 NR_049887 100847053 NR_049887 miRBase:MI0019309 MIR5702 - microRNA 5702 ncRNA 13-PTNLD9-TUMOR_peak_10898 chr11 91715242 91715540 + 20.95144 NA Intergenic Intergenic -369871 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10 FAT atypical cadherin 3 protein-coding 13-PTNLD9-TUMOR_peak_32950 chr22 24596680 24596924 + 20.95144 NA Intergenic L1M5|LINE|L1 19358 NM_019601 56241 Hs.131819 NM_019601 HPRD:18132 SUSD2 BK65A6.2 sushi domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_37324 chr3 194258597 194258900 + 20.95144 NA Intergenic Intergenic -46249 NR_047574 100507297 Hs.586059 NR_047573 TMEM44-AS1 - TMEM44 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_28229 chr2 119936864 119937074 + 20.95144 NA Intergenic Intergenic -20498 NM_182528 165257 Hs.433493 NM_182528 HPRD:12713 C1QL2 C1QTNF10|CTRP10 complement component 1, q subcomponent-like 2 protein-coding 13-PTNLD9-TUMOR_peak_342 chr1 9687134 9687370 + 20.95144 NA Intergenic CpG -24538 NM_005026 5293 Hs.518451 NM_005026 ENSG00000171608 PIK3CD APDS|IMD14|P110DELTA|PI3K|p110D phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit delta protein-coding 13-PTNLD9-TUMOR_peak_10525 chr11 71505449 71505626 + 20.94721 NA non-coding (NR_073386, exon 4 of 4) non-coding (NR_073386, exon 4 of 4) 6980 NM_152563 55199 Hs.567527 NM_018172 HPRD:13337 FAM86C1 FAM86C family with sequence similarity 86, member C1 protein-coding 13-PTNLD9-TUMOR_peak_351 chr1 9896348 9896804 + 20.94065 NA Intergenic Intergenic -12026 NM_014944 22883 Hs.29665 NM_014944 HPRD:10837 CLSTN1 ALC-ALPHA|CDHR12|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2 calsyntenin 1 protein-coding 13-PTNLD9-TUMOR_peak_37629 chr4 2667532 2667733 + 20.94065 NA intron (NR_046335, intron 10 of 18) AluYc|SINE|Alu 40473 NM_001256666 8603 Hs.652364 NM_003704 HPRD:09850 FAM193A C4orf8 family with sequence similarity 193, member A protein-coding 13-PTNLD9-TUMOR_peak_42577 chr5 148832818 148833105 + 20.94065 NA Intergenic Intergenic 22752 NR_029686 406937 NR_029686 miRBase:MI0000461 MIR145 MIRN145|miR-145|miRNA145 microRNA 145 ncRNA 13-PTNLD9-TUMOR_peak_24349 chr19 17908317 17908568 + 20.94020 NA intron (NM_014256, intron 1 of 2) intron (NM_014256, intron 1 of 2) 2523 NM_014256 10331 Hs.69009 NM_014256 HPRD:10431 B3GNT3 B3GAL-T8|B3GN-T3|B3GNT-3|HP10328|TMEM3|beta3Gn-T3 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3 protein-coding 13-PTNLD9-TUMOR_peak_20121 chr16 89386691 89387025 + 20.93258 NA promoter-TSS (NM_001242885) promoter-TSS (NM_001242885) -683 NM_001242885 100287036 Hs.656995 NM_001242885 LOC100287036 - uncharacterized LOC100287036 protein-coding 13-PTNLD9-TUMOR_peak_18896 chr16 28818848 28819113 + 20.92868 NA Intergenic AluSz6|SINE|Alu -15389 NM_148416 11273 Hs.460499 NM_007245 HPRD:06394 ATXN2L A2D|A2LG|A2LP|A2RP ataxin 2-like protein-coding 13-PTNLD9-TUMOR_peak_23092 chr18 45494463 45494741 + 20.92344 NA Intergenic MER77|LTR|ERVL -37085 NM_001003652 4087 Hs.12253 NM_005901 HPRD:03221 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding 13-PTNLD9-TUMOR_peak_19755 chr16 74758764 74759075 + 20.92344 NA intron (NM_024306, intron 4 of 6) intron (NM_024306, intron 4 of 6) -24130 NM_001142497 197259 Hs.119878 NM_152649 HPRD:08752 MLKL hMLKL mixed lineage kinase domain-like protein-coding 13-PTNLD9-TUMOR_peak_39306 chr4 128630172 128630424 + 20.92344 NA intron (NM_015693, intron 13 of 15) LTR16A|LTR|ERVL -21257 NM_031291 83447 Hs.149030 NM_031291 HPRD:13160 SLC25A31 AAC4|ANT4|SFEC35kDa solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31 protein-coding 13-PTNLD9-TUMOR_peak_7473 chr10 62174618 62174883 + 20.92344 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) -25116 NM_020987 288 Hs.499725 NM_001149 HPRD:02715 ANK3 ANKYRIN-G|MRT37 ankyrin 3, node of Ranvier (ankyrin G) protein-coding 13-PTNLD9-TUMOR_peak_851 chr1 28520387 28520560 + 20.92344 NA promoter-TSS (NM_001164721) promoter-TSS (NM_001164721) -26 NM_001164722 5724 Hs.77542 NM_000952 HPRD:01422 PTAFR PAFR platelet-activating factor receptor protein-coding 13-PTNLD9-TUMOR_peak_7155 chr10 43836147 43836393 + 20.92344 NA Intergenic L2a|LINE|L2 -30822 NM_001184963 53828 Hs.130497 NM_173160 HPRD:07019 FXYD4 CHIF FXYD domain containing ion transport regulator 4 protein-coding 13-PTNLD9-TUMOR_peak_31642 chr20 55362691 55362999 + 20.90040 NA Intergenic Intergenic 158487 NM_003222 7022 Hs.473152 NM_003222 HPRD:03361 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma) protein-coding 13-PTNLD9-TUMOR_peak_21454 chr17 48367366 48367694 + 20.89912 NA Intergenic Intergenic -2314 NR_125805 103752589 Hs.612913 NR_125805 TMEM92-AS1 TCONS_00025237|lncRNA-508851 TMEM92 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_45160 chr6 44629023 44629282 + 20.89912 NA Intergenic Intergenic 225774 NR_039785 100616352 NR_039785 MIR4642 - microRNA 4642 ncRNA 13-PTNLD9-TUMOR_peak_36240 chr3 142572246 142572520 + 20.89884 NA intron (NM_013363, intron 2 of 8) intron (NM_013363, intron 2 of 8) 35662 NM_013363 26577 Hs.8944 NM_013363 HPRD:06139 PCOLCE2 PCPE2 procollagen C-endopeptidase enhancer 2 protein-coding 13-PTNLD9-TUMOR_peak_24757 chr19 35800399 35800696 + 20.89722 NA intron (NM_002361, intron 7 of 10) LTR42|LTR|ERVL 17558 NM_001199216 4099 Hs.643440 NM_002361 HPRD:01160 MAG GMA|S-MAG|SIGLEC-4A|SIGLEC4A myelin associated glycoprotein protein-coding 13-PTNLD9-TUMOR_peak_7932 chr10 88105666 88105990 + 20.89024 NA intron (NM_017551, intron 2 of 15) L2c|LINE|L2 20422 NM_017551 2894 Hs.530653 NM_017551 HPRD:17078 GRID1 GluD1 glutamate receptor, ionotropic, delta 1 protein-coding 13-PTNLD9-TUMOR_peak_50535 chr8 30389662 30389875 + 20.89024 NA intron (NM_001008712, intron 5 of 6) intron (NM_001008712, intron 5 of 6) -106349 NM_001206847 100507341 Hs.659493 NM_001206847 ENSG00000253457 SMIM18 - small integral membrane protein 18 protein-coding 13-PTNLD9-TUMOR_peak_10 chr1 421431 421631 + 20.88453 NA Intergenic Intergenic 53872 NM_001005277 81399 Hs.632360 NM_001005277 HPRD:14969 OR4F16 OR1-1|OR7-21 olfactory receptor, family 4, subfamily F, member 16 protein-coding 13-PTNLD9-TUMOR_peak_39093 chr4 112702818 112703084 + 20.87440 NA Intergenic Tigger7|DNA|TcMar-Tigger -363602 NM_152400 132720 Hs.23439 NM_152400 C4orf32 - chromosome 4 open reading frame 32 protein-coding 13-PTNLD9-TUMOR_peak_35200 chr3 100755109 100755476 + 20.87440 NA Intergenic ERVL-int|LTR|ERVL -42958 NM_015429 25890 Hs.477015 NM_015429 HPRD:09380 ABI3BP NESHBP|TARSH ABI family, member 3 (NESH) binding protein protein-coding 13-PTNLD9-TUMOR_peak_3728 chr1 153581403 153581936 + 20.87389 NA intron (NM_080388, intron 1 of 2) intron (NM_080388, intron 1 of 2) 3845 NM_080388 140576 Hs.515714 NM_080388 HPRD:11529 S100A16 DT1P1A7|S100F S100 calcium binding protein A16 protein-coding 13-PTNLD9-TUMOR_peak_11747 chr12 151989 152184 + 20.87389 NA Intergenic MLT1E1A-int|LTR|ERVL-MaLR -23963 NM_001170738 440073 Hs.536319 NM_015232 ENSG00000120645 IQSEC3 - IQ motif and Sec7 domain 3 protein-coding 13-PTNLD9-TUMOR_peak_30482 chr20 15922847 15923094 + 20.86894 NA intron (NM_080676, intron 12 of 16) intron (NM_080676, intron 12 of 16) 631109 NM_024704 55614 Hs.101774 NM_024704 HPRD:10731 KIF16B C20orf23|KISC20ORF|SNX23 kinesin family member 16B protein-coding 13-PTNLD9-TUMOR_peak_54677 chr9 124441749 124441942 + 20.86894 NA intron (NM_032552, intron 2 of 16) L2b|LINE|L2 -63219 NM_138709 153090 Hs.522378 NM_032552 HPRD:09903 DAB2IP AF9Q34|AIP-1|AIP1|DIP1/2 DAB2 interacting protein protein-coding 13-PTNLD9-TUMOR_peak_37479 chr3 197221327 197221872 + 20.85960 NA Intergenic Intergenic 61259 NM_203314 622 Hs.274539 NM_004051 HPRD:04344 BDH1 BDH|SDR9C1 3-hydroxybutyrate dehydrogenase, type 1 protein-coding 13-PTNLD9-TUMOR_peak_10171 chr11 64602804 64603049 + 20.85106 NA intron (NM_017525, intron 15 of 36) intron (NM_017525, intron 15 of 36) 9115 NM_017525 55561 Hs.293590 NM_017525 HPRD:13013 CDC42BPG DMPK2|HSMDPKIN|KAPPA-200|MRCKG|MRCKgamma CDC42 binding protein kinase gamma (DMPK-like) protein-coding 13-PTNLD9-TUMOR_peak_13072 chr12 58923813 58924009 + 20.85106 NA Intergenic Intergenic 251587 NR_120452 101927653 Hs.130744 NR_120452 LOC101927653 - uncharacterized LOC101927653 ncRNA 13-PTNLD9-TUMOR_peak_32452 chr21 44344080 44344304 + 20.85106 NA Intergenic HERVH48-int|LTR|ERV1 30814 NM_021075 4731 Hs.473937 NM_021075 NDUFV3 CI-10k|CI-9KD NADH dehydrogenase (ubiquinone) flavoprotein 3, 10kDa protein-coding 13-PTNLD9-TUMOR_peak_48124 chr7 78912679 78912866 + 20.85106 NA intron (NM_001301128, intron 1 of 20) MLT1L|LTR|ERVL-MaLR -169501 NR_038346 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 13-PTNLD9-TUMOR_peak_13881 chr12 112534541 112534680 + 20.85106 NA intron (NM_024953, intron 1 of 23) intron (NM_024953, intron 1 of 23) 12025 NM_024953 80018 Hs.530941 NM_024953 HPRD:08578 NAA25 C12orf30|MDM20|NAP1 N(alpha)-acetyltransferase 25, NatB auxiliary subunit protein-coding 13-PTNLD9-TUMOR_peak_50236 chr8 21299001 21299266 + 20.85106 NA Intergenic Intergenic 143383 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 13-PTNLD9-TUMOR_peak_44151 chr6 24903121 24903325 + 20.84745 NA intron (NM_001286446, intron 1 of 13) MLT1G|LTR|ERVL-MaLR 8175 NM_014722 9750 Hs.559459 NM_014722 HPRD:12881 FAM65B C6orf32|DIFF40|DIFF48|MYONAP|PL48 family with sequence similarity 65, member B protein-coding 13-PTNLD9-TUMOR_peak_49398 chr7 140640754 140640997 + 20.84698 NA Intergenic ERVL-B4-int|LTR|ERVL -16311 NM_004333 673 Hs.550061 NM_004333 HPRD:01264 BRAF B-RAF1|BRAF1|NS7|RAFB1 B-Raf proto-oncogene, serine/threonine kinase protein-coding 13-PTNLD9-TUMOR_peak_37477 chr3 197214787 197214977 + 20.84698 NA Intergenic Intergenic 67976 NM_203314 622 Hs.274539 NM_004051 HPRD:04344 BDH1 BDH|SDR9C1 3-hydroxybutyrate dehydrogenase, type 1 protein-coding 13-PTNLD9-TUMOR_peak_42556 chr5 148381700 148381969 + 20.84187 NA 3' UTR (NM_024577, exon 17 of 17) 3' UTR (NM_024577, exon 17 of 17) 60903 NM_024577 79628 Hs.483784 NM_024577 SH3TC2 CMT4C|MNMN SH3 domain and tetratricopeptide repeats 2 protein-coding 13-PTNLD9-TUMOR_peak_54200 chr9 101544314 101544655 + 20.84187 NA intron (NM_173551, intron 5 of 14) intron (NM_173551, intron 5 of 14) 14310 NM_173551 203286 Hs.406890 NM_173551 HPRD:18012 ANKS6 ANKRD14|NPHP16|PKDR1|SAMD6 ankyrin repeat and sterile alpha motif domain containing 6 protein-coding 13-PTNLD9-TUMOR_peak_52229 chr8 136468923 136469270 + 20.83987 NA promoter-TSS (NM_006558) promoter-TSS (NM_006558) -620 NM_006558 10656 Hs.444558 NM_006558 HPRD:10007 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH domain containing, RNA binding, signal transduction associated 3 protein-coding 13-PTNLD9-TUMOR_peak_38566 chr4 73177790 73178092 + 20.82865 NA intron (NM_014243, intron 13 of 21) intron (NM_014243, intron 13 of 21) 256575 NM_014243 9508 Hs.590919 NM_014243 HPRD:06893 ADAMTS3 ADAMTS-4 ADAM metallopeptidase with thrombospondin type 1 motif, 3 protein-coding 13-PTNLD9-TUMOR_peak_43366 chr5 180847988 180848188 + 20.82726 NA Intergenic Intergenic 53800 NM_001005221 729759 Hs.632360 NM_001005221 HPRD:14971 OR4F29 OR7-21 olfactory receptor, family 4, subfamily F, member 29 protein-coding 13-PTNLD9-TUMOR_peak_19952 chr16 84869817 84870137 + 20.82410 NA intron (NM_031476, intron 1 of 14) intron (NM_031476, intron 1 of 14) 16390 NM_031476 83716 Hs.513779 NM_031476 HPRD:13186 CRISPLD2 CRISP11|LCRISP2 cysteine-rich secretory protein LCCL domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_22452 chr18 2875276 2875754 + 20.82113 NA intron (NM_032048, intron 2 of 7) intron (NM_032048, intron 2 of 7) 28487 NM_032048 84034 Hs.532815 NM_032048 EMILIN2 EMILIN-2|FOAP-10 elastin microfibril interfacer 2 protein-coding 13-PTNLD9-TUMOR_peak_43722 chr6 9482326 9482563 + 20.82113 NA Intergenic Intergenic 830002 NR_004855 728655 Hs.214343 NR_004855 ENSG00000251164 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 13-PTNLD9-TUMOR_peak_45581 chr6 80873502 80873820 + 20.82113 NA intron (NM_183050, intron 3 of 9) L2a|LINE|L2 57317 NM_183050 594 Hs.654441 NM_000056 HPRD:02011 BCKDHB E1B|dJ279A18.1 branched chain keto acid dehydrogenase E1, beta polypeptide protein-coding 13-PTNLD9-TUMOR_peak_15967 chr14 62029642 62029881 + 20.81943 NA non-coding (NR_110416, exon 4 of 5) non-coding (NR_110416, exon 4 of 5) 7151 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LOC101927780 - uncharacterized LOC101927780 ncRNA 13-PTNLD9-TUMOR_peak_36507 chr3 156800241 156800791 + 20.81832 NA non-coding (NR_034007, exon 4 of 4) non-coding (NR_034007, exon 4 of 4) -7154 NR_034008 100498859 Hs.633655 NR_034008 ENSG00000241135 LINC00881 - long intergenic non-protein coding RNA 881 ncRNA 13-PTNLD9-TUMOR_peak_52210 chr8 135578831 135579078 + 20.80769 NA intron (NR_110323, intron 10 of 16) intron (NR_110323, intron 10 of 16) -31360 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_53583 chr9 72726614 72726915 + 20.80769 NA intron (NM_153267, intron 4 of 13) LTR33|LTR|ERVL 64040 NR_040076 100507244 Hs.556816 NR_040076 ENSG00000204706 MAMDC2-AS1 - MAMDC2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_19469 chr16 58132369 58132690 + 20.80769 NA Intergenic Intergenic 30767 NM_013242 29105 Hs.532755 NM_013242 HPRD:13616 CFAP20 C16orf80|EVORF|GTL3|fSAP23 cilia and flagella associated protein 20 protein-coding 13-PTNLD9-TUMOR_peak_17652 chr15 74715314 74715635 + 20.80769 NA intron (NM_001146029, intron 1 of 12) intron (NM_001146029, intron 1 of 12) 10527 NM_001146030 8482 Hs.24640 NM_003612 HPRD:07081 SEMA7A CD108|CDw108|H-SEMA-K1|H-Sema-L|JMH|SEMAK1|SEMAL semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group) protein-coding 13-PTNLD9-TUMOR_peak_25440 chr19 50709104 50709404 + 20.80540 NA intron (NM_001145809, intron 1 of 42) intron (NM_001145809, intron 1 of 42) 2369 NM_001145809 79784 Hs.467142 NM_024729 HPRD:10543 MYH14 DFNA4|DFNA4A|MHC16|MYH17|NMHC II-C|NMHC-II-C|PNMHH|myosin myosin, heavy chain 14, non-muscle protein-coding 13-PTNLD9-TUMOR_peak_27917 chr2 106020533 106021032 + 20.79626 NA intron (NM_201557, intron 1 of 5) intron (NM_201557, intron 1 of 5) -5101 NM_001450 2274 Hs.443687 NM_001450 HPRD:04026 FHL2 AAG11|DRAL|FHL-2|SLIM-3|SLIM3 four and a half LIM domains 2 protein-coding 13-PTNLD9-TUMOR_peak_41799 chr5 114755511 114755812 + 20.79402 NA Intergenic MLT1J|LTR|ERVL-MaLR -123203 NM_001040440 153733 Hs.436121 NM_152549 HPRD:11346 CCDC112 MBC1 coiled-coil domain containing 112 protein-coding 13-PTNLD9-TUMOR_peak_39988 chr4 185304724 185304929 + 20.78437 NA Intergenic Intergenic -29696 NR_040108 728175 Hs.590107 NR_040108 ENSG00000180712 LOC728175 - uncharacterized LOC728175 ncRNA 13-PTNLD9-TUMOR_peak_2530 chr1 94511239 94511478 + 20.78437 NA intron (NM_000350, intron 19 of 49) intron (NM_000350, intron 19 of 49) 75347 NM_000350 24 Hs.416707 NM_000350 HPRD:03408 ABCA4 ABC10|ABCR|ARMD2|CORD3|FFM|RMP|RP19|STGD|STGD1 ATP-binding cassette, sub-family A (ABC1), member 4 protein-coding 13-PTNLD9-TUMOR_peak_47557 chr7 56019447 56019736 + 20.78308 NA promoter-TSS (NM_015969) promoter-TSS (NM_015969) -20 NM_015969 51373 Hs.44298 NM_015969 HPRD:14779 MRPS17 HSPC011|MRP-S17|RPMS17|S17mt mitochondrial ribosomal protein S17 protein-coding 13-PTNLD9-TUMOR_peak_5825 chr1 231647963 231648483 + 20.78008 NA Intergenic Intergenic -16176 NR_028395 100303453 Hs.13318 NR_028393 TSNAX-DISC1 - TSNAX-DISC1 readthrough (NMD candidate) ncRNA 13-PTNLD9-TUMOR_peak_37128 chr3 187744509 187744763 + 20.78008 NA Intergenic Intergenic -127025 NM_001167672 4026 Hs.720220 NM_005578 HPRD:02828 LPP - LIM domain containing preferred translocation partner in lipoma protein-coding 13-PTNLD9-TUMOR_peak_14153 chr12 123163655 123163914 + 20.78008 NA Intergenic Intergenic 24120 NM_177551 338442 Hs.524812 NM_177551 HPRD:16453 HCAR2 GPR109A|HCA2|HM74a|HM74b|NIACR1|PUMAG|Puma-g hydroxycarboxylic acid receptor 2 protein-coding 13-PTNLD9-TUMOR_peak_19942 chr16 84652369 84652749 + 20.78008 NA promoter-TSS (NM_021149) promoter-TSS (NM_021149) -857 NM_021149 23406 Hs.289092 NM_021149 HPRD:09482 COTL1 CLP coactosin-like F-actin binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_33762 chr3 11179103 11179361 + 20.78008 NA intron (NM_001098213, intron 1 of 1) L2|LINE|L2 453 NM_001098213 3269 Hs.1570 NM_000861 HPRD:02544 HRH1 H1-R|hisH1 histamine receptor H1 protein-coding 13-PTNLD9-TUMOR_peak_14390 chr13 20994028 20994427 + 20.78008 NA intron (NM_015974, intron 5 of 7) intron (NM_015974, intron 5 of 7) 13758 NR_039721 100616304 NR_039721 MIR4499 - microRNA 4499 ncRNA 13-PTNLD9-TUMOR_peak_44709 chr6 33745813 33746154 + 20.78008 NA intron (NM_181336, intron 6 of 8) intron (NM_181336, intron 6 of 8) 8736 NM_001143944 221496 Hs.444845 NM_181336 HPRD:13984 LEMD2 NET25|dJ482C21.1 LEM domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_1662 chr1 47644862 47645150 + 20.76624 NA promoter-TSS (NR_047498) promoter-TSS (NR_047498) 84 NR_047498 100874253 Hs.435758 NR_047498 ENSG00000224805 LINC00853 PDZK1IP1-AS1|ncRNA-a4 long intergenic non-protein coding RNA 853 ncRNA 13-PTNLD9-TUMOR_peak_47992 chr7 75039467 75039686 + 20.75130 NA promoter-TSS (NR_033322) promoter-TSS (NR_033322) -29 NR_104013 155400 Hs.436034 NM_001039575 NSUN5P1 NSUN5B|WBSCR20B NOP2/Sun domain family, member 5 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_18573 chr16 14458299 14458721 + 20.74626 NA Intergenic Intergenic 55368 NR_029854 100126355 NR_029854 miRBase:MI0000767 MIR365A MIR365-1|MIRN365-1|hsa-mir-365a microRNA 365a ncRNA 13-PTNLD9-TUMOR_peak_1935 chr1 59042741 59043192 + 20.74499 NA 5' UTR (NM_002353, exon 1 of 1) 5' UTR (NM_002353, exon 1 of 1) 200 NM_002353 4070 Hs.23582 NM_002353 HPRD:00672 TACSTD2 EGP-1|EGP1|GA733-1|GA7331|GP50|M1S1|TROP2 tumor-associated calcium signal transducer 2 protein-coding 13-PTNLD9-TUMOR_peak_1499 chr1 44249177 44249813 + 20.74499 NA intron (NM_001270465, intron 2 of 7) intron (NM_001270465, intron 2 of 7) -54799 NR_106727 102464830 NR_106727 MIR6079 hsa-mir-6079 microRNA 6079 ncRNA 13-PTNLD9-TUMOR_peak_30140 chr2 239348068 239348414 + 20.74295 NA intron (NM_001040445, intron 3 of 4) intron (NM_001040445, intron 3 of 4) 12615 NM_001040445 51665 Hs.516788 NM_016114 HPRD:05767 ASB1 ASB-1 ankyrin repeat and SOCS box containing 1 protein-coding 13-PTNLD9-TUMOR_peak_6927 chr10 35057595 35057875 + 20.74295 NA intron (NM_001184791, intron 1 of 20) intron (NM_001184791, intron 1 of 20) 46518 NM_001184791 56288 Hs.131489 NM_019619 HPRD:05994 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 13-PTNLD9-TUMOR_peak_353 chr1 9903579 9903871 + 20.74208 NA Intergenic Intergenic -19175 NM_014944 22883 Hs.29665 NM_014944 HPRD:10837 CLSTN1 ALC-ALPHA|CDHR12|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2 calsyntenin 1 protein-coding 13-PTNLD9-TUMOR_peak_29746 chr2 213574070 213574335 + 20.74131 NA Intergenic L2c|LINE|L2 -170850 NM_005235 2066 Hs.390729 NM_005235 HPRD:02767 ERBB4 ALS19|HER4|p180erbB4 v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 4 protein-coding 13-PTNLD9-TUMOR_peak_2605 chr1 98552322 98552577 + 20.70807 NA Intergenic L2b|LINE|L2 -37200 NR_046105 400765 Hs.451802 NM_001001688 HPRD:16937 MIR137HG - MIR137 host gene (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_24250 chr19 15974150 15974431 + 20.70621 NA Intergenic Intergenic 34533 NR_015379 652995 Hs.644234 NR_015379 ENSG00000214049 UCA1 CUDR|LINC00178|NCRNA00178|UCAT1 urothelial cancer associated 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_32980 chr22 25364159 25364455 + 20.70621 NA Intergenic Intergenic -28993 NM_001001663 255349 Hs.329040 NM_001001663 HPRD:17327 TMEM211 bA9F11.1 transmembrane protein 211 protein-coding 13-PTNLD9-TUMOR_peak_44817 chr6 36584842 36585328 + 20.69834 NA Intergenic Intergenic 5204 NR_037491 100500885 NR_037491 miRBase:MI0016433 MIR3925 - microRNA 3925 ncRNA 13-PTNLD9-TUMOR_peak_12662 chr12 47411716 47411986 + 20.69782 NA Intergenic Intergenic -61535 NM_001281429 91523 Hs.560100 NM_138371 HPRD:17513 PCED1B FAM113B PC-esterase domain containing 1B protein-coding 13-PTNLD9-TUMOR_peak_53675 chr9 78533213 78533367 + 20.69782 NA intron (NR_120409, intron 1 of 19) MER5A|DNA|hAT-Charlie 27730 NM_001190482 5125 Hs.368542 NM_006200 HPRD:08985 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 13-PTNLD9-TUMOR_peak_51733 chr8 120066255 120066457 + 20.69727 NA Intergenic MER44B|DNA|TcMar-Tigger -13068 NM_006438 10584 Hs.176615 NM_006438 COLEC10 CLL1 collectin sub-family member 10 (C-type lectin) protein-coding 13-PTNLD9-TUMOR_peak_44750 chr6 34992446 34992847 + 20.68841 NA intron (NM_015245, intron 11 of 23) intron (NM_015245, intron 11 of 23) 116541 NM_001261818 6954 Hs.435371 NM_018679 HPRD:01749 TCP11 D6S230E|FPPR t-complex 11, testis-specific protein-coding 13-PTNLD9-TUMOR_peak_36367 chr3 149867459 149867835 + 20.68841 NA Intergenic Intergenic -88659 NR_110168 101927992 Hs.534682 NR_110167 ENSG00000244541 LINC01213 - long intergenic non-protein coding RNA 1213 ncRNA 13-PTNLD9-TUMOR_peak_23815 chr19 7915033 7915415 + 20.67664 NA intron (NM_145245, intron 6 of 18) intron (NM_145245, intron 6 of 18) 3838 NM_001159944 115704 Hs.26870 NM_145245 HPRD:10044 EVI5L - ecotropic viral integration site 5-like protein-coding 13-PTNLD9-TUMOR_peak_14305 chr12 130582384 130582831 + 20.67664 NA Intergenic Intergenic -55720 NR_024457 100190940 Hs.625993 NR_024457 ENSG00000214039 LOC100190940 - uncharacterized LOC100190940 ncRNA 13-PTNLD9-TUMOR_peak_13315 chr12 71054706 71054921 + 20.67664 NA exon (NM_002849, exon 12 of 14) exon (NM_002849, exon 12 of 14) -23593 NM_001109754 5787 Hs.434375 NM_002837 HPRD:01474 PTPRB HPTP-BETA|HPTPB|PTPB|R-PTP-BETA|VEPTP protein tyrosine phosphatase, receptor type, B protein-coding 13-PTNLD9-TUMOR_peak_9081 chr11 12097870 12098314 + 20.67664 NA Intergenic Intergenic -34031 NM_014632 9645 Hs.501928 NM_014632 HPRD:10085 MICAL2 MICAL-2|MICAL2PV1|MICAL2PV2 microtubule associated monooxygenase, calponin and LIM domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_52102 chr8 131755801 131756149 + 20.67147 NA Intergenic LTR89|LTR|ERVL? 296860 NM_001115 114 Hs.591859 NM_001115 HPRD:00051 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 (brain) protein-coding 13-PTNLD9-TUMOR_peak_48335 chr7 93686236 93686545 + 20.67147 NA Intergenic MLT1G3|LTR|ERVL-MaLR -52700 NM_005868 10282 Hs.489132 NM_005868 HPRD:16107 BET1 HBET1 Bet1 golgi vesicular membrane trafficking protein protein-coding 13-PTNLD9-TUMOR_peak_40873 chr5 54281517 54281848 + 20.66604 NA promoter-TSS (NM_001135604) promoter-TSS (NM_001135604) -268 NM_001135604 11082 Hs.129944 NM_007036 HPRD:03310 ESM1 endocan endothelial cell-specific molecule 1 protein-coding 13-PTNLD9-TUMOR_peak_51363 chr8 98803712 98803943 + 20.66604 NA intron (NM_018407, intron 1 of 6) intron (NM_018407, intron 1 of 6) 16018 NM_018407 55353 Hs.492314 NM_018407 LAPTM4B LAPTM4beta|LC27 lysosomal protein transmembrane 4 beta protein-coding 13-PTNLD9-TUMOR_peak_4745 chr1 184807834 184808105 + 20.66604 NA intron (NM_052966, intron 5 of 13) intron (NM_052966, intron 5 of 13) -83928 NM_025191 80267 Hs.523811 NM_025191 HPRD:10724 EDEM3 C1orf22 ER degradation enhancer, mannosidase alpha-like 3 protein-coding 13-PTNLD9-TUMOR_peak_45010 chr6 42055803 42056411 + 20.66054 NA Intergenic Intergenic 37856 NM_138572 129685 Hs.520122 NM_138572 HPRD:18167 TAF8 43|II|TAF|TAFII-43|TAFII43|TBN TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 43kDa protein-coding 13-PTNLD9-TUMOR_peak_32656 chr22 17652370 17652895 + 20.65160 NA Intergenic CpG -6455 NM_017829 27440 Hs.26890 NM_017829 HPRD:16703 CECR5 - cat eye syndrome chromosome region, candidate 5 protein-coding 13-PTNLD9-TUMOR_peak_30843 chr20 33301256 33301573 + 20.64834 NA TTS (NM_021202) TTS (NM_021202) 9266 NM_021202 58476 Hs.516994 NM_021202 HPRD:15546 TP53INP2 C20orf110|DOR|PINH|dJ1181N3.1 tumor protein p53 inducible nuclear protein 2 protein-coding 13-PTNLD9-TUMOR_peak_53633 chr9 75142216 75142645 + 20.64834 NA intron (NM_138691, intron 1 of 23) intron (NM_138691, intron 1 of 23) 5713 NM_138691 117531 Hs.670211 NM_138691 HPRD:05988 TMC1 DFNA36|DFNB11|DFNB7 transmembrane channel-like 1 protein-coding 13-PTNLD9-TUMOR_peak_52553 chr8 146094698 146094994 + 20.64754 NA Intergenic AluY|SINE|Alu -15883 NM_001081003 28991 Hs.631856 NM_014066 HPRD:16301 COMMD5 HCARG COMM domain containing 5 protein-coding 13-PTNLD9-TUMOR_peak_31125 chr20 42816162 42816426 + 20.64754 NA promoter-TSS (NM_020433) promoter-TSS (NM_020433) -76 NM_020433 57158 Hs.441737 NM_020433 HPRD:12006 JPH2 CMH17|JP-2|JP2 junctophilin 2 protein-coding 13-PTNLD9-TUMOR_peak_36702 chr3 170627375 170627673 + 20.64754 NA Intergenic Intergenic -1098 NM_020390 56648 Hs.164144 NM_020390 HPRD:10426 EIF5A2 EIF-5A2|eIF5AII eukaryotic translation initiation factor 5A2 protein-coding 13-PTNLD9-TUMOR_peak_22487 chr18 3794569 3795119 + 20.64605 NA intron (NM_001242764, intron 2 of 9) intron (NM_001242764, intron 2 of 9) 50514 NM_001242766 9229 Hs.594640 NM_004746 HPRD:09260 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1|hGKAP discs, large (Drosophila) homolog-associated protein 1 protein-coding 13-PTNLD9-TUMOR_peak_9881 chr11 57202222 57202457 + 20.63797 NA Intergenic MLT2F|LTR|ERVL -7286 NM_017611 29015 Hs.99962 NM_014096 HPRD:15391 SLC43A3 EEG1|FOAP-13|PRO1659|SEEEG-1 solute carrier family 43, member 3 protein-coding 13-PTNLD9-TUMOR_peak_17440 chr15 64679823 64680073 + 20.63797 NA promoter-TSS (NR_109934) promoter-TSS (NR_109934) -55 NM_016213 9325 Hs.500340 NM_016213 HPRD:05140 TRIP4 ASC-1|ASC1|HsT17391|ZC2HC5 thyroid hormone receptor interactor 4 protein-coding 13-PTNLD9-TUMOR_peak_21842 chr17 65418015 65418364 + 20.63797 NA intron (NM_181671, intron 1 of 9) intron (NM_181671, intron 1 of 9) 44792 NM_012417 26207 Hs.591185 NM_012417 HPRD:05504 PITPNC1 M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1 phosphatidylinositol transfer protein, cytoplasmic 1 protein-coding 13-PTNLD9-TUMOR_peak_47353 chr7 44297412 44297770 + 20.63591 NA intron (NM_001293170, intron 4 of 20) intron (NM_001293170, intron 4 of 20) 57013 NM_006555 10652 Hs.520794 NM_006555 HPRD:16205 YKT6 - YKT6 v-SNARE homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_52094 chr8 131617030 131617436 + 20.63591 NA Intergenic Intergenic -161327 NM_018482 50807 Hs.655552 NM_018482 HPRD:05809 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 13-PTNLD9-TUMOR_peak_37844 chr4 7863145 7863346 + 20.63591 NA intron (NM_198595, intron 3 of 16) intron (NM_198595, intron 3 of 16) 78408 NM_198595 60312 Hs.529369 NM_021638 HPRD:09747 AFAP1 AFAP|AFAP-110|AFAP110 actin filament associated protein 1 protein-coding 13-PTNLD9-TUMOR_peak_23985 chr19 11205698 11206038 + 20.63015 NA intron (NM_001195799, intron 1 of 16) intron (NM_001195799, intron 1 of 16) 5830 NM_001195800 3949 Hs.213289 NM_000527 HPRD:06091 LDLR FH|FHC|LDLCQ2 low density lipoprotein receptor protein-coding 13-PTNLD9-TUMOR_peak_45561 chr6 79880697 79880933 + 20.61336 NA Intergenic Intergenic -62576 NR_040671 100288198 Hs.586270 NR_040671 ENSG00000270362 HMGN3-AS1 - HMGN3 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_15064 chr13 106803719 106803994 + 20.61336 NA Intergenic Intergenic -225055 NR_034119 728192 Hs.559194 NR_034119 LINC00460 - long intergenic non-protein coding RNA 460 ncRNA 13-PTNLD9-TUMOR_peak_7503 chr10 64010687 64010888 + 20.61336 NA intron (NM_001282941, intron 2 of 4) Tigger7|DNA|TcMar-Tigger 17835 NM_145307 219790 Hs.58559 NM_145307 HPRD:17863 RTKN2 PLEKHK1|bA531F24.1 rhotekin 2 protein-coding 13-PTNLD9-TUMOR_peak_29390 chr2 192458829 192459043 + 20.61149 NA Intergenic MER5A|DNA|hAT-Charlie -83862 NM_001254736 64859 Hs.591610 NM_022837 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_14928 chr13 87776307 87776646 + 20.61149 NA Intergenic X3_LINE|LINE|RTE-BovB 494519 NR_039722 100616182 NR_039722 miRBase:MI0016863 MIR4500 - microRNA 4500 ncRNA 13-PTNLD9-TUMOR_peak_12352 chr12 26452000 26452190 + 20.61149 NA Intergenic Intergenic 103589 NM_005086 8082 Hs.183428 NM_005086 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 13-PTNLD9-TUMOR_peak_6708 chr10 24753026 24753317 + 20.60523 NA intron (NM_001282769, intron 1 of 13) intron (NM_001282769, intron 1 of 13) -2263 NM_001282770 56243 Hs.445885 NM_019590 HPRD:11132 KIAA1217 SKT KIAA1217 protein-coding 13-PTNLD9-TUMOR_peak_6290 chr10 3137527 3137873 + 20.59848 NA intron (NM_001242339, intron 3 of 23) MARNA|DNA|TcMar-Mariner 26881 NM_001242339 5214 Hs.26010 NM_002627 HPRD:01384 PFKP ATP-PFK|PFK-C|PFK-P|PFKF phosphofructokinase, platelet protein-coding 13-PTNLD9-TUMOR_peak_43685 chr6 7618559 7618994 + 20.59848 NA Intergenic MamGypLTR3|LTR|Gypsy 28344 NM_152551 154007 Hs.13366 NM_152551 HPRD:12858 SNRNP48 C6orf151|dJ336K20B.1|dJ512B11.2 small nuclear ribonucleoprotein 48kDa (U11/U12) protein-coding 13-PTNLD9-TUMOR_peak_8941 chr11 7546103 7546359 + 20.58597 NA intron (NM_003621, intron 1 of 23) intron (NM_003621, intron 1 of 23) 11235 NM_003621 8495 Hs.655714 NM_003621 HPRD:04391 PPFIBP2 Cclp1 PTPRF interacting protein, binding protein 2 (liprin beta 2) protein-coding 13-PTNLD9-TUMOR_peak_32218 chr21 36236378 36236705 + 20.58597 NA intron (NM_001122607, intron 2 of 4) intron (NM_001122607, intron 2 of 4) 24446 NM_001122607 861 Hs.149261 NM_001754 HPRD:01043 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBFA2|EVI-1|PEBP2aB runt-related transcription factor 1 protein-coding 13-PTNLD9-TUMOR_peak_40432 chr5 16894657 16894901 + 20.58597 NA intron (NM_012334, intron 1 of 40) intron (NM_012334, intron 1 of 40) 41606 NM_012334 4651 Hs.481720 NM_012334 HPRD:03283 MYO10 - myosin X protein-coding 13-PTNLD9-TUMOR_peak_32311 chr21 39810388 39810820 + 20.58350 NA intron (NM_001243429, intron 2 of 8) intron (NM_001243429, intron 2 of 8) 59824 NM_001136155 2078 Hs.473819 NM_004449 HPRD:01298 ERG erg-3|p55 v-ets avian erythroblastosis virus E26 oncogene homolog protein-coding 13-PTNLD9-TUMOR_peak_10329 chr11 66845844 66846095 + 20.58350 NA Intergenic Intergenic 21680 NM_001300886 29984 Hs.15114 NM_014578 HPRD:05776 RHOD ARHD|RHOHP1|RHOM|Rho ras homolog family member D protein-coding 13-PTNLD9-TUMOR_peak_28414 chr2 129935958 129936221 + 20.56738 NA Intergenic MER52A|LTR|ERV1 95375 NR_122041 151121 Hs.531687 NM_001033657 ENSG00000204460 LOC151121 - uncharacterized LOC151121 ncRNA 13-PTNLD9-TUMOR_peak_9188 chr11 15886934 15887125 + 20.56738 NA Intergenic Intergenic 104138 NR_106721 102464826 NR_106721 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 13-PTNLD9-TUMOR_peak_42296 chr5 139294057 139294280 + 20.56738 NA intron (NM_001184935, intron 1 of 7) intron (NM_001184935, intron 1 of 7) 118762 NM_032289 84249 Hs.21963 NM_032289 HPRD:15190 PSD2 - pleckstrin and Sec7 domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_52226 chr8 135917861 135918238 + 20.56738 NA Intergenic Intergenic 55871 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 13-PTNLD9-TUMOR_peak_31339 chr20 47600058 47600252 + 20.56738 NA intron (NM_006420, intron 14 of 38) L2a|LINE|L2 61880 NM_006420 10564 Hs.62578 NM_006420 HPRD:09250 ARFGEF2 BIG2|PVNH2|dJ1164I10.1 ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited) protein-coding 13-PTNLD9-TUMOR_peak_54382 chr9 111506169 111506608 + 20.56738 NA Intergenic Intergenic 111887 NM_006686 10880 Hs.534390 NM_006686 ACTL7B Tact1 actin-like 7B protein-coding 13-PTNLD9-TUMOR_peak_40358 chr5 13865526 13865759 + 20.55926 NA intron (NM_001369, intron 27 of 78) intron (NM_001369, intron 27 of 78) 78947 NM_001369 1767 Hs.212360 NM_001369 HPRD:04514 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein, axonemal, heavy chain 5 protein-coding 13-PTNLD9-TUMOR_peak_16137 chr14 69417822 69418107 + 20.54722 NA intron (NM_001102, intron 1 of 20) intron (NM_001102, intron 1 of 20) 28119 NM_001130004 87 Hs.509765 NM_001102 HPRD:00020 ACTN1 BDPLT15 actinin, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_32235 chr21 36664653 36664838 + 20.54722 NA Intergenic L1MC3|LINE|L1 -243150 NM_001754 861 Hs.149261 NM_001754 HPRD:01043 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBFA2|EVI-1|PEBP2aB runt-related transcription factor 1 protein-coding 13-PTNLD9-TUMOR_peak_40126 chr5 82324 82563 + 20.52597 NA Intergenic Intergenic -57930 NM_052909 153478 Hs.535800 NM_052909 PLEKHG4B - pleckstrin homology domain containing, family G (with RhoGef domain) member 4B protein-coding 13-PTNLD9-TUMOR_peak_33486 chr22 47733011 47733315 + 20.51326 NA Intergenic LTR33B|LTR|ERVL 149697 NR_109967 101927722 Hs.589927 NR_109967 ENSG00000218357 LOC101927722 - uncharacterized LOC101927722 ncRNA 13-PTNLD9-TUMOR_peak_358 chr1 10078676 10078846 + 20.51326 NA Intergenic MER41B|LTR|ERV1 -14280 NM_001105562 10277 Hs.593974 NM_006048 HPRD:11659 UBE4B E4|HDNB1|UBOX3|UFD2|UFD2A ubiquitination factor E4B protein-coding 13-PTNLD9-TUMOR_peak_49257 chr7 136208436 136208705 + 20.50347 NA Intergenic Intergenic -344829 NM_001006627 1129 Hs.535891 NM_000739 HPRD:00328 CHRM2 HM2 cholinergic receptor, muscarinic 2 protein-coding 13-PTNLD9-TUMOR_peak_16431 chr14 90979974 90980254 + 20.49815 NA Intergenic Intergenic 58540 NR_033986 400238 Hs.131037 NR_033986 ENSG00000233208 LINC00642 - long intergenic non-protein coding RNA 642 ncRNA 13-PTNLD9-TUMOR_peak_41370 chr5 77800626 77800933 + 20.49815 NA intron (NM_005779, intron 4 of 4) intron (NM_005779, intron 4 of 4) 143869 NM_005779 10184 Hs.79299 NM_005779 HPRD:17272 LHFPL2 - lipoma HMGIC fusion partner-like 2 protein-coding 13-PTNLD9-TUMOR_peak_2254 chr1 78769450 78769639 + 20.49815 NA intron (NR_027310, intron 3 of 5) intron (NR_027310, intron 3 of 5) 74261 NR_027310 149047 Hs.352665 NM_144700 ENSG00000237413 MGC27382 - uncharacterized MGC27382 ncRNA 13-PTNLD9-TUMOR_peak_18481 chr16 10334714 10334997 + 20.49815 NA Intergenic MIR|SINE|MIR -58244 NM_000833 2903 Hs.411472 NM_000833 HPRD:00698 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate receptor, ionotropic, N-methyl D-aspartate 2A protein-coding 13-PTNLD9-TUMOR_peak_10775 chr11 80305102 80305408 + 20.49815 NA Intergenic Intergenic 168591 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LOC101928944 - uncharacterized LOC101928944 ncRNA 13-PTNLD9-TUMOR_peak_44806 chr6 36337400 36337649 + 20.49815 NA intron (NM_001207038, intron 4 of 6) MIRb|SINE|MIR 18044 NM_001207038 51513 Hs.272398 NM_016135 HPRD:16095 ETV7 TEL-2|TEL2|TELB ets variant 7 protein-coding 13-PTNLD9-TUMOR_peak_18901 chr16 28891244 28891478 + 20.49815 NA promoter-TSS (NM_001286075) promoter-TSS (NM_001286075) -3 NM_001286075 487 Hs.657344 NM_004320 HPRD:00157 ATP2A1 ATP2A|SERCA1 ATPase, Ca++ transporting, cardiac muscle, fast twitch 1 protein-coding 13-PTNLD9-TUMOR_peak_21896 chr17 70354713 70355010 + 20.49815 NA Intergenic Intergenic 234082 NR_036488 100499467 Hs.157726 NR_036488 LINC00673 LINC00511 long intergenic non-protein coding RNA 673 ncRNA 13-PTNLD9-TUMOR_peak_28668 chr2 148113316 148113574 + 20.48256 NA Intergenic Intergenic -488641 NM_001278580 92 Hs.470174 NM_001616 HPRD:00025 ACVR2A ACTRII|ACVR2 activin A receptor, type IIA protein-coding 13-PTNLD9-TUMOR_peak_22847 chr18 26745298 26745542 + 20.48256 NA Intergenic Intergenic -987975 NM_001792 1000 Hs.464829 NM_001792 HPRD:00226 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2, type 1, N-cadherin (neuronal) protein-coding 13-PTNLD9-TUMOR_peak_7175 chr10 44547260 44547469 + 20.48256 NA Intergenic Intergenic 142612 NR_033846 283033 Hs.730228 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 13-PTNLD9-TUMOR_peak_51407 chr8 101576391 101576542 + 20.47914 NA Intergenic Intergenic -4452 NM_001270377 157567 Hs.530199 NM_198401 HPRD:14103 ANKRD46 ANK-S|GENX-115279 ankyrin repeat domain 46 protein-coding 13-PTNLD9-TUMOR_peak_4055 chr1 159837550 159837818 + 20.46665 NA Intergenic Intergenic -5237 NM_001013661 391123 Hs.647718 NM_001013661 HPRD:18404 VSIG8 - V-set and immunoglobulin domain containing 8 protein-coding 13-PTNLD9-TUMOR_peak_4776 chr1 185615427 185615786 + 20.46665 NA Intergenic Intergenic -17986 NR_110793 101929093 Hs.535227 NR_110793 ENSG00000228309 LINC01350 GS1-204I12.1 long intergenic non-protein coding RNA 1350 ncRNA 13-PTNLD9-TUMOR_peak_34190 chr3 32010477 32010883 + 20.46665 NA intron (NM_017784, intron 1 of 11) intron (NM_017784, intron 1 of 11) -12586 NM_001137674 344787 Hs.585139 NM_001137674 ENSG00000197385 ZNF860 - zinc finger protein 860 protein-coding 13-PTNLD9-TUMOR_peak_14988 chr13 99137087 99137446 + 20.46665 NA intron (NM_001032296, intron 2 of 10) intron (NM_001032296, intron 2 of 10) 37113 NM_003576 8428 Hs.508514 NM_003576 HPRD:10385 STK24 HEL-S-95|MST3|MST3B|STE20|STK3 serine/threonine kinase 24 protein-coding 13-PTNLD9-TUMOR_peak_27395 chr2 85134276 85134925 + 20.45746 NA TTS (NM_021103) TTS (NM_021103) 1837 NM_021103 9168 Hs.446574 NM_021103 HPRD:01779 TMSB10 MIG12|TB10 thymosin beta 10 protein-coding 13-PTNLD9-TUMOR_peak_4265 chr1 165796726 165797245 + 20.45194 NA 5' UTR (NM_012474, exon 1 of 7) 5' UTR (NM_012474, exon 1 of 7) 253 NM_012474 7371 Hs.458360 NM_012474 UCK2 TSA903|UK|UMPK uridine-cytidine kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_35857 chr3 129204610 129205031 + 20.44839 NA intron (NM_052989, intron 15 of 29) intron (NM_052989, intron 15 of 29) -42662 NM_000539 6010 Hs.247565 NM_000539 HPRD:01584 RHO CSNBAD1|OPN2|RP4 rhodopsin protein-coding 13-PTNLD9-TUMOR_peak_35934 chr3 131748196 131748387 + 20.44755 NA intron (NM_001289112, intron 1 of 15) intron (NM_001289112, intron 1 of 15) 5995 NM_130808 131034 Hs.199877 NM_130808 HPRD:05017 CPNE4 COPN4|CPN4 copine IV protein-coding 13-PTNLD9-TUMOR_peak_12250 chr12 16131671 16131895 + 20.44755 NA intron (NM_001300779, intron 5 of 7) MIR|SINE|MIR 67677 NM_015954 51071 Hs.39429 NM_015954 HPRD:13138 DERA DEOC deoxyribose-phosphate aldolase (putative) protein-coding 13-PTNLD9-TUMOR_peak_9476 chr11 33856775 33857009 + 20.43760 NA Intergenic LTR84a|LTR|ERVL 34479 NM_001142316 4005 Hs.34560 NM_005574 HPRD:01586 LMO2 RBTN2|RBTNL1|RHOM2|TTG2 LIM domain only 2 (rhombotin-like 1) protein-coding 13-PTNLD9-TUMOR_peak_2263 chr1 80276905 80277137 + 20.43760 NA Intergenic Intergenic -804526 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ELTD1 ETL|KPG_003 EGF, latrophilin and seven transmembrane domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_39141 chr4 116937431 116937643 + 20.43760 NA Intergenic HERV3-int|LTR|ERV1 -283344 NR_031737 100302290 NR_031737 MIR1973 hsa-mir-1973 microRNA 1973 ncRNA 13-PTNLD9-TUMOR_peak_27925 chr2 106778468 106778677 + 20.43760 NA intron (NR_045607, intron 3 of 13) intron (NR_045607, intron 3 of 13) -23235 NM_001253876 80146 Hs.469561 NM_025076 HPRD:15642 UXS1 SDR6E1|UGD UDP-glucuronate decarboxylase 1 protein-coding 13-PTNLD9-TUMOR_peak_12658 chr12 47353315 47353543 + 20.42887 NA Intergenic Intergenic -119957 NM_001281429 91523 Hs.560100 NM_138371 HPRD:17513 PCED1B FAM113B PC-esterase domain containing 1B protein-coding 13-PTNLD9-TUMOR_peak_41794 chr5 114707772 114708232 + 20.42887 NA Intergenic MIR|SINE|MIR -75544 NM_001040440 153733 Hs.436121 NM_152549 HPRD:11346 CCDC112 MBC1 coiled-coil domain containing 112 protein-coding 13-PTNLD9-TUMOR_peak_47358 chr7 44513009 44513190 + 20.42887 NA intron (NM_015332, intron 2 of 5) MIRb|SINE|MIR 17286 NM_015332 23386 Hs.488171 NM_015332 NUDCD3 NudCL NudC domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_41744 chr5 111920577 111920810 + 20.42887 NA Intergenic HERVL32-int|LTR|ERVL -43440 NR_104672 102467214 Hs.124613 NR_104672 LOC102467214 - uncharacterized LOC102467214 ncRNA 13-PTNLD9-TUMOR_peak_23158 chr18 47384935 47385235 + 20.42887 NA intron (NM_001080467, intron 29 of 39) intron (NM_001080467, intron 29 of 39) 44692 NR_117096 103091864 Hs.646459 NR_117096 SNHG22 SCARNA17HG small nucleolar RNA host gene 22 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_31560 chr20 52234428 52234669 + 20.42226 NA Intergenic Intergenic -34912 NM_006526 7764 Hs.155040 NM_006526 HPRD:04272 ZNF217 ZABC1 zinc finger protein 217 protein-coding 13-PTNLD9-TUMOR_peak_53832 chr9 87611118 87611356 + 20.41955 NA intron (NM_001018064, intron 15 of 16) intron (NM_001018064, intron 15 of 16) 325945 NM_001018064 4915 Hs.494312 NM_006180 HPRD:02712 NTRK2 GP145-TrkB|TRKB|trk-B neurotrophic tyrosine kinase, receptor, type 2 protein-coding 13-PTNLD9-TUMOR_peak_29764 chr2 214860188 214860442 + 20.41955 NA intron (NR_047659, intron 14 of 17) MamGypLTR1a|LTR|Gypsy -416146 NM_001080500 402117 Hs.534834 NM_001080500 VWC2L - von Willebrand factor C domain containing protein 2-like protein-coding 13-PTNLD9-TUMOR_peak_14044 chr12 120835616 120835765 + 20.41955 NA Intergenic CpG -28707 NM_002442 4440 Hs.158311 NM_002442 HPRD:04509 MSI1 - musashi RNA-binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_44056 chr6 20183268 20183444 + 20.41955 NA intron (NM_001080480, intron 1 of 12) intron (NM_001080480, intron 1 of 12) 29339 NR_073465 154141 Hs.377830 NM_001080480 MBOAT1 1|LPEAT1|LPLAT|LPLAT 1|LPSAT|OACT1|dJ434O11.1 membrane bound O-acyltransferase domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_40266 chr5 9265520 9266056 + 20.41206 NA intron (NM_003966, intron 5 of 22) LTR53|LTR|ERVL -211781 NR_039779 100616326 NR_039779 MIR4636 - microRNA 4636 ncRNA 13-PTNLD9-TUMOR_peak_46985 chr7 20238985 20239368 + 20.40785 NA intron (NM_182762, intron 1 of 6) intron (NM_182762, intron 1 of 6) 17837 NM_182762 346389 Hs.598388 NM_182762 HPRD:12381 MACC1 7A5|SH3BP4L metastasis associated in colon cancer 1 protein-coding 13-PTNLD9-TUMOR_peak_26374 chr2 26980825 26981178 + 20.40419 NA Intergenic MER41A|LTR|ERV1 -6141 NM_017877 54978 Hs.1594 NM_017877 HPRD:12808 SLC35F6 ANT2BP|C2orf18|TANGO9 solute carrier family 35, member F6 protein-coding 13-PTNLD9-TUMOR_peak_32498 chr21 44937689 44937884 + 20.39354 NA Intergenic Intergenic -39683 NR_026863 114038 Hs.592161 NM_153752 HPRD:10770 LINC00313 C21orf84|NCRNA00313 long intergenic non-protein coding RNA 313 ncRNA 13-PTNLD9-TUMOR_peak_24236 chr19 15666632 15666916 + 20.39354 NA Intergenic Intergenic 47438 NM_173483 126410 Hs.156452 NM_173483 HPRD:08256 CYP4F22 ARCI5|INLNE|LI3 cytochrome P450, family 4, subfamily F, polypeptide 22 protein-coding 13-PTNLD9-TUMOR_peak_4102 chr1 160490055 160490220 + 20.36531 NA intron (NM_052931, intron 1 of 7) intron (NM_052931, intron 1 of 7) 2915 NM_001184715 114836 Hs.492348 NM_052931 HPRD:05920 SLAMF6 CD352|KALI|KALIb|Ly108|NTB-A|NTBA|SF2000 SLAM family member 6 protein-coding 13-PTNLD9-TUMOR_peak_943 chr1 31895610 31895813 + 20.36531 NA intron (NM_001199039, intron 2 of 10) intron (NM_001199039, intron 2 of 10) 9051 NM_018565 347735 Hs.270655 NM_018565 HPRD:15481 SERINC2 PRO0899|TDE2|TDE2L serine incorporator 2 protein-coding 13-PTNLD9-TUMOR_peak_10963 chr11 95022565 95022920 + 20.36531 NA Intergenic Intergenic -57037 NM_001271594 143686 Hs.120633 NM_144665 HPRD:09682 SESN3 SEST3 sestrin 3 protein-coding 13-PTNLD9-TUMOR_peak_16486 chr14 94425721 94426070 + 20.36310 NA intron (NM_001202429, intron 2 of 9) intron (NM_001202429, intron 2 of 9) -2128 NM_016150 51676 Hs.510327 NM_016150 HPRD:05768 ASB2 ASB-2 ankyrin repeat and SOCS box containing 2 protein-coding 13-PTNLD9-TUMOR_peak_10899 chr11 91863550 91863910 + 20.36310 NA Intergenic MIR3|SINE|MIR -221532 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10 FAT atypical cadherin 3 protein-coding 13-PTNLD9-TUMOR_peak_4698 chr1 183178747 183178994 + 20.36310 NA intron (NM_018891, intron 2 of 21) intron (NM_018891, intron 2 of 21) 23696 NM_018891 3918 Hs.591484 NM_005562 HPRD:01031 LAMC2 B2T|BM600|CSF|EBR2|EBR2A|LAMB2T|LAMNB2 laminin, gamma 2 protein-coding 13-PTNLD9-TUMOR_peak_41265 chr5 73258895 73259258 + 20.36310 NA Intergenic Intergenic 149733 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor (GEF) 28 protein-coding 13-PTNLD9-TUMOR_peak_27036 chr2 62688932 62689099 + 20.36310 NA Intergenic MIR3|SINE|MIR 44589 NM_198276 200728 Hs.308028 NM_198276 HPRD:15528 TMEM17 - transmembrane protein 17 protein-coding 13-PTNLD9-TUMOR_peak_38035 chr4 15923017 15923228 + 20.36310 NA Intergenic Intergenic 17241 NM_005130 9982 Hs.1690 NM_005130 HPRD:06371 FGFBP1 FGF-BP|FGF-BP1|FGFBP|FGFBP-1|HBP17 fibroblast growth factor binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_4255 chr1 165451502 165451687 + 20.36310 NA non-coding (NR_026744, exon 6 of 7) non-coding (NR_026744, exon 6 of 7) -37002 NM_006917 6258 Hs.26550 NM_006917 HPRD:01579 RXRG NR2B3|RXRC retinoid X receptor, gamma protein-coding 13-PTNLD9-TUMOR_peak_48341 chr7 94003623 94003772 + 20.36310 NA Intergenic Intergenic -20176 NM_000089 1278 Hs.489142 NM_000089 HPRD:00363 COL1A2 OI4 collagen, type I, alpha 2 protein-coding 13-PTNLD9-TUMOR_peak_11623 chr11 129328342 129328511 + 20.36038 NA Intergenic Intergenic 82545 NM_003658 8538 Hs.591944 NM_003658 HPRD:16074 BARX2 - BARX homeobox 2 protein-coding 13-PTNLD9-TUMOR_peak_19774 chr16 75339343 75339687 + 20.36038 NA intron (NM_006324, intron 5 of 6) MIR|SINE|MIR -37564 NM_001170715 9564 Hs.479747 NM_014567 HPRD:04248 BCAR1 CAS|CAS1|CASS1|CRKAS|P130Cas breast cancer anti-estrogen resistance 1 protein-coding 13-PTNLD9-TUMOR_peak_17753 chr15 79280844 79281230 + 20.36038 NA intron (NM_002891, intron 23 of 27) intron (NM_002891, intron 23 of 27) 16965 NM_153815 5923 Hs.459035 NM_002891 ENSG00000058335 RASGRF1 CDC25|CDC25L|GNRP|GRF1|GRF55|H-GRF55|PP13187|ras-GRF1 Ras protein-specific guanine nucleotide-releasing factor 1 protein-coding 13-PTNLD9-TUMOR_peak_10380 chr11 67651784 67651985 + 20.35588 NA Intergenic HERVS71-int|LTR|ERV1 -79077 NR_024249 645332 Hs.535094 NR_024249 ENSG00000160172 FAM86C2P - family with sequence similarity 86, member A pseudogene pseudo 13-PTNLD9-TUMOR_peak_2628 chr1 100125337 100125588 + 20.35588 NA intron (NM_017734, intron 1 of 7) intron (NM_017734, intron 1 of 7) 14031 NM_017734 54873 Hs.483993 NM_017734 HPRD:06673 PALMD C1orf11|PALML palmdelphin protein-coding 13-PTNLD9-TUMOR_peak_13673 chr12 105812093 105812448 + 20.35588 NA Intergenic Intergenic 87856 NM_001145199 387882 Hs.368938 NM_207376 HPRD:17368 C12orf75 AGD3|OCC-1|OCC1 chromosome 12 open reading frame 75 protein-coding 13-PTNLD9-TUMOR_peak_27986 chr2 110456624 110456859 + 20.35588 NA Intergenic L1MEc|LINE|L1 84830 NM_023016 65124 Hs.355455 NM_023016 HPRD:08643 SOWAHC ANKRD57|C2orf26 sosondowah ankyrin repeat domain family member C protein-coding 13-PTNLD9-TUMOR_peak_56608 chrX 149857431 149857822 + 20.34951 NA Intergenic LTR40A1|LTR|ERVL -4243 NM_003828 8776 Hs.347187 NM_003828 HPRD:02163 MTMR1 - myotubularin related protein 1 protein-coding 13-PTNLD9-TUMOR_peak_14074 chr12 121471798 121471984 + 20.34951 NA intron (NM_001261825, intron 1 of 3) MIRb|SINE|MIR 5154 NM_001261825 8638 Hs.118633 NM_003733 HPRD:04473 OASL OASLd|TRIP-14|TRIP14|p59 OASL|p59-OASL|p59OASL 2'-5'-oligoadenylate synthetase-like protein-coding 13-PTNLD9-TUMOR_peak_33947 chr3 15687640 15687877 + 20.34951 NA TTS (NM_001281725) TTS (NM_001281725) 44282 NM_001281725 686 Hs.517830 NM_000060 HPRD:08359 BTD - biotinidase protein-coding 13-PTNLD9-TUMOR_peak_54380 chr9 111435737 111436013 + 20.34951 NA Intergenic L2c|LINE|L2 182400 NM_006686 10880 Hs.534390 NM_006686 ACTL7B Tact1 actin-like 7B protein-coding 13-PTNLD9-TUMOR_peak_50990 chr8 56883464 56883715 + 20.34951 NA intron (NM_001111097, intron 10 of 12) intron (NM_001111097, intron 10 of 12) 91203 NM_002350 4067 Hs.491767 NM_002350 HPRD:01301 LYN JTK8|p53Lyn|p56Lyn LYN proto-oncogene, Src family tyrosine kinase protein-coding 13-PTNLD9-TUMOR_peak_32853 chr22 21889057 21889526 + 20.34645 NA Intergenic AluJb|SINE|Alu -14445 NM_001256355 7332 Hs.108104 NM_003347 HPRD:04762 UBE2L3 E2-F1|L-UBC|UBCH7|UbcM4 ubiquitin-conjugating enzyme E2L 3 protein-coding 13-PTNLD9-TUMOR_peak_5585 chr1 224642174 224642680 + 20.34645 NA Intergenic Intergenic -20426 NM_001115113 80232 Hs.497873 NM_025160 HPRD:18298 WDR26 CDW2|GID7|MIP2 WD repeat domain 26 protein-coding 13-PTNLD9-TUMOR_peak_28404 chr2 129153498 129153834 + 20.33943 NA Intergenic Intergenic -77495 NM_004807 9394 Hs.512841 NM_004807 HPRD:07274 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_21300 chr17 45356484 45357031 + 20.33179 NA intron (NM_000212, intron 2 of 14) intron (NM_000212, intron 2 of 14) 25549 NM_000212 3690 Hs.218040 NM_000212 HPRD:01428 ITGB3 BDPLT16|BDPLT2|CD61|GP3A|GPIIIa|GT integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61) protein-coding 13-PTNLD9-TUMOR_peak_32332 chr21 40279025 40279357 + 20.32566 NA intron (NR_120405, intron 2 of 3) intron (NR_120405, intron 2 of 3) 31162 NR_120405 400867 Hs.689509 NR_120405 LOC400867 - uncharacterized LOC400867 ncRNA 13-PTNLD9-TUMOR_peak_4690 chr1 183133571 183133786 + 20.31001 NA Intergenic Intergenic -21496 NM_005562 3918 Hs.591484 NM_005562 HPRD:01031 LAMC2 B2T|BM600|CSF|EBR2|EBR2A|LAMB2T|LAMNB2 laminin, gamma 2 protein-coding 13-PTNLD9-TUMOR_peak_48051 chr7 76050515 76050729 + 20.30149 NA intron (NM_007155, intron 1 of 8) AluJo|SINE|Alu -3650 NM_001110354 7784 Hs.656137 NM_007155 HPRD:01690 ZP3 ZP3A|ZP3B|ZPC|Zp-3 zona pellucida glycoprotein 3 (sperm receptor) protein-coding 13-PTNLD9-TUMOR_peak_32804 chr22 20884987 20885150 + 20.29231 NA intron (NM_001293237, intron 1 of 16) intron (NM_001293237, intron 1 of 16) 22733 NM_001293237 51586 Hs.517421 NM_015889 HPRD:12117 MED15 ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7 mediator complex subunit 15 protein-coding 13-PTNLD9-TUMOR_peak_22263 chr17 79303340 79303670 + 20.29231 NA intron (NM_178520, intron 1 of 2) intron (NM_178520, intron 1 of 2) 969 NM_178520 284186 Hs.364191 NM_178520 HPRD:08247 TMEM105 - transmembrane protein 105 protein-coding 13-PTNLD9-TUMOR_peak_16235 chr14 74044024 74044198 + 20.29231 NA Intergenic Intergenic 8348 NM_006821 10965 Hs.446685 NM_006821 HPRD:10173 ACOT2 CTE-IA|CTE1A|MTE1|PTE2|PTE2A|ZAP128 acyl-CoA thioesterase 2 protein-coding 13-PTNLD9-TUMOR_peak_931 chr1 31506506 31506765 + 20.29231 NA intron (NM_001020658, intron 2 of 21) AluJr|SINE|Alu 31929 NM_001020658 9698 Hs.281707 NM_014676 HPRD:06230 PUM1 HSPUM|PUMH|PUMH1|PUML1 pumilio RNA-binding family member 1 protein-coding 13-PTNLD9-TUMOR_peak_38798 chr4 86395992 86396650 + 20.29176 NA promoter-TSS (NM_001025616) promoter-TSS (NM_001025616) 37 NM_001025616 83478 Hs.444229 NM_031305 HPRD:09804 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 13-PTNLD9-TUMOR_peak_26816 chr2 46715168 46715392 + 20.29176 NA Intergenic Intergenic 8576 NM_001145051 388946 Hs.733348 NM_001145051 ENSG00000187600 TMEM247 - transmembrane protein 247 protein-coding 13-PTNLD9-TUMOR_peak_36324 chr3 149017983 149018205 + 20.29176 NA Intergenic MER72B|LTR|ERV1 33165 NM_001184723 116441 Hs.22026 NM_138786 HPRD:14018 TM4SF18 L6D transmembrane 4 L six family member 18 protein-coding 13-PTNLD9-TUMOR_peak_48001 chr7 75258509 75258905 + 20.29176 NA intron (NM_005338, intron 1 of 30) intron (NM_005338, intron 1 of 30) -101254 NR_028059 5387 Hs.659871 NM_005395 HPRD:17866 PMS2P3 PMS2L3|PMS2L9|PMS5|PMSR3 postmeiotic segregation increased 2 pseudogene 3 pseudo 13-PTNLD9-TUMOR_peak_40307 chr5 10479284 10479704 + 20.29176 NA Intergenic Intergenic 1345 NR_106747 102465138 NR_106747 MIR6131 hsa-mir-6131 microRNA 6131 ncRNA 13-PTNLD9-TUMOR_peak_16157 chr14 69783852 69784084 + 20.29176 NA intron (NM_020692, intron 1 of 15) MLT1K-int|LTR|ERVL-MaLR 57287 NM_001168368 57452 Hs.21035 NM_020692 HPRD:13562 GALNT16 GALNACT16|GALNTL1|GalNAc-T16 polypeptide N-acetylgalactosaminyltransferase 16 protein-coding 13-PTNLD9-TUMOR_peak_806 chr1 27438521 27438921 + 20.29034 NA intron (NR_046474, intron 1 of 10) intron (NR_046474, intron 1 of 10) 42900 NR_046474 6548 Hs.91389 NM_003047 HPRD:00123 SLC9A1 APNH|NHE-1|NHE1|PPP1R143 solute carrier family 9, subfamily A (NHE1, cation proton antiporter 1), member 1 protein-coding 13-PTNLD9-TUMOR_peak_44134 chr6 24647081 24647249 + 20.29034 NA promoter-TSS (NM_001168375) promoter-TSS (NM_001168375) -782 NM_014809 9856 Hs.26441 NM_014809 HPRD:18713 KIAA0319 DYLX2|DYX2|NMIG KIAA0319 protein-coding 13-PTNLD9-TUMOR_peak_31300 chr20 46450548 46450821 + 20.29034 NA Intergenic Intergenic -35324 NM_198596 55959 Hs.162016 NM_018837 HPRD:18130 SULF2 HSULF-2 sulfatase 2 protein-coding 13-PTNLD9-TUMOR_peak_54433 chr9 113507025 113507525 + 20.29034 NA intron (NM_001166281, intron 6 of 11) intron (NM_001166281, intron 6 of 11) 76224 NM_001166280 4593 Hs.521653 NM_005592 HPRD:03190 MUSK - muscle, skeletal, receptor tyrosine kinase protein-coding 13-PTNLD9-TUMOR_peak_23004 chr18 41703822 41704056 + 20.28896 NA Intergenic MIR|SINE|MIR 407723 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 13-PTNLD9-TUMOR_peak_19476 chr16 58382951 58383261 + 20.28896 NA Intergenic Intergenic -43192 NM_001126130 64785 Hs.47125 NM_022770 HPRD:07842 GINS3 PSF3 GINS complex subunit 3 (Psf3 homolog) protein-coding 13-PTNLD9-TUMOR_peak_31494 chr20 50073830 50074098 + 20.28633 NA intron (NM_001258296, intron 5 of 10) intron (NM_001258296, intron 5 of 10) -4450 NR_036162 100422889 NR_036162 MIR3194 - microRNA 3194 ncRNA 13-PTNLD9-TUMOR_peak_15990 chr14 63645658 63646048 + 20.28633 NA Intergenic MLT2B3|LTR|ERVL -25249 NM_020663 57381 Hs.656339 NM_020663 HPRD:09632 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 13-PTNLD9-TUMOR_peak_12245 chr12 15815612 15815885 + 20.28470 NA intron (NM_004447, intron 8 of 20) intron (NM_004447, intron 8 of 20) 116470 NM_030668 5800 Hs.160871 NM_002848 HPRD:02784 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase, receptor type, O protein-coding 13-PTNLD9-TUMOR_peak_38577 chr4 74542770 74543050 + 20.28470 NA Intergenic Intergenic -56562 NM_001270392 166824 Hs.529677 NM_177532 HPRD:15220 RASSF6 - Ras association (RalGDS/AF-6) domain family member 6 protein-coding 13-PTNLD9-TUMOR_peak_50682 chr8 40032075 40032496 + 20.28470 NA Intergenic Intergenic 21298 NM_020130 56892 Hs.591849 NM_020130 HPRD:09650 C8orf4 TC-1|TC1 chromosome 8 open reading frame 4 protein-coding 13-PTNLD9-TUMOR_peak_30623 chr20 23900724 23901140 + 20.28470 NA Intergenic Intergenic -40552 NM_001900 1473 Hs.121489 NM_001900 HPRD:00463 CST5 - cystatin D protein-coding 13-PTNLD9-TUMOR_peak_53555 chr9 71790056 71790302 + 20.27468 NA intron (NM_201629, intron 1 of 20) intron (NM_201629, intron 1 of 20) 1208 NM_001170630 9414 Hs.50382 NM_004817 HPRD:06369 TJP2 C9DUPq21.11|DFNA51|DUP9q21.11|PFIC4|X104|ZO2 tight junction protein 2 protein-coding 13-PTNLD9-TUMOR_peak_54063 chr9 97574642 97574978 + 20.27468 NA intron (NM_032823, intron 5 of 14) intron (NM_032823, intron 5 of 14) 2566 NR_031755 100313780 NR_031755 MIR2278 - microRNA 2278 ncRNA 13-PTNLD9-TUMOR_peak_2157 chr1 68607073 68607652 + 20.26034 NA intron (NR_040077, intron 9 of 9) intron (NR_040077, intron 9 of 9) 41931 NR_031664 100302279 NR_031664 MIR1262 MIRN1262|hsa-mir-1262 microRNA 1262 ncRNA 13-PTNLD9-TUMOR_peak_13205 chr12 66526290 66526447 + 20.24077 NA intron (NR_125724, intron 1 of 1) intron (NR_125724, intron 1 of 1) -1835 NM_032338 84298 Hs.504820 NM_032338 HPRD:11308 LLPH C12orf31|hLLP LLP homolog, long-term synaptic facilitation (Aplysia) protein-coding 13-PTNLD9-TUMOR_peak_5299 chr1 207068698 207068996 + 20.24077 NA Intergenic Intergenic -1941 NM_001185156 11009 Hs.58831 NM_006850 HPRD:04995 IL24 C49A|FISP|IL10B|MDA7|MOB5|ST16 interleukin 24 protein-coding 13-PTNLD9-TUMOR_peak_35400 chr3 112816958 112817350 + 20.23161 NA Intergenic Intergenic 69424 NR_110823 101929717 Hs.638426 NR_110823 ENSG00000243795 LOC101929717 - uncharacterized LOC101929717 ncRNA 13-PTNLD9-TUMOR_peak_51697 chr8 119021367 119021720 + 20.23161 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 102515 NM_000127 2131 Hs.492618 NM_000127 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_15904 chr14 59130437 59130941 + 20.22968 NA Intergenic Intergenic 25134 NR_046095 51339 Hs.48950 NM_016651 HPRD:09709 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|THYEX3 dishevelled-binding antagonist of beta-catenin 1 protein-coding 13-PTNLD9-TUMOR_peak_31593 chr20 52749133 52749613 + 20.22968 NA Intergenic Intergenic 41143 NM_000782 1591 Hs.89663 NM_000782 HPRD:00522 CYP24A1 CP24|CYP24|HCAI|P450-CC24 cytochrome P450, family 24, subfamily A, polypeptide 1 protein-coding 13-PTNLD9-TUMOR_peak_33704 chr3 9926194 9926439 + 20.22968 NA Intergenic Intergenic -4378 NM_001199551 63924 Hs.567562 NM_022094 HPRD:13060 CIDEC CIDE-3|CIDE3|FPLD5|FSP27 cell death-inducing DFFA-like effector c protein-coding 13-PTNLD9-TUMOR_peak_16806 chr15 23668367 23668523 + 20.22433 NA Intergenic Intergenic 68550 NR_038843 653061 Hs.528454 NR_038843 GOLGA8S - golgin A8 family, member S pseudo 13-PTNLD9-TUMOR_peak_28208 chr2 119496166 119496562 + 20.22433 NA Intergenic Intergenic 109395 NM_001426 2019 Hs.271977 NM_001426 HPRD:08835 EN1 - engrailed homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_36321 chr3 148942876 148943282 + 20.22433 NA Intergenic Intergenic -3247 NR_046371 1356 Hs.558314 NM_000096 HPRD:00317 CP CP-2 ceruloplasmin (ferroxidase) protein-coding 13-PTNLD9-TUMOR_peak_43745 chr6 10511794 10512016 + 20.22433 NA Intergenic L1MA6|LINE|L1 -9663 NM_145649 2651 Hs.519884 NM_001491 HPRD:02695 GCNT2 CCAT|CTRCT13|GCNT2C|GCNT5|IGNT|II|NACGT1|NAGCT1|ULG3|bA360O19.2|bA421M1.1 glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group) protein-coding 13-PTNLD9-TUMOR_peak_19310 chr16 50431137 50431406 + 20.22433 NA Intergenic L2c|LINE|L2 -28426 NM_001173984 29117 Hs.437894 NM_013263 ENSG00000166164 BRD7 BP75|CELTIX1|NAG4 bromodomain containing 7 protein-coding 13-PTNLD9-TUMOR_peak_18190 chr16 1347012 1347201 + 20.22433 NA Intergenic LTR10A|LTR|ERV1 -12048 NM_194260 7329 Hs.302903 NM_003345 HPRD:09045 UBE2I C358B7.1|P18|UBC9 ubiquitin-conjugating enzyme E2I protein-coding 13-PTNLD9-TUMOR_peak_28297 chr2 121692457 121692641 + 20.22397 NA intron (NM_005270, intron 2 of 12) intron (NM_005270, intron 2 of 12) 137682 NM_005270 2736 Hs.111867 NM_005270 HPRD:01312 GLI2 HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 13-PTNLD9-TUMOR_peak_21960 chr17 72987875 72988023 + 20.21819 NA intron (NM_014603, intron 1 of 4) intron (NM_014603, intron 1 of 4) 4222 NM_014603 30850 Hs.78358 NM_014603 HPRD:11041 CDR2L HUMPPA cerebellar degeneration-related protein 2-like protein-coding 13-PTNLD9-TUMOR_peak_29005 chr2 168954026 168954283 + 20.21545 NA intron (NM_013233, intron 10 of 17) AluJr|SINE|Alu 149951 NM_013233 27347 Hs.276271 NM_013233 HPRD:09627 STK39 DCHT|PASK|SPAK serine threonine kinase 39 protein-coding 13-PTNLD9-TUMOR_peak_38572 chr4 74088723 74088902 + 20.21545 NA promoter-TSS (NM_001286771) promoter-TSS (NM_001286771) 19 NM_001286771 26057 Hs.601206 NM_032217 HPRD:10648 ANKRD17 GTAR|NY-BR-16 ankyrin repeat domain 17 protein-coding 13-PTNLD9-TUMOR_peak_40147 chr5 513835 514121 + 20.21286 NA intron (NM_001284351, intron 1 of 16) intron (NM_001284351, intron 1 of 16) 10571 NM_004174 6550 Hs.658120 NM_004174 HPRD:01660 SLC9A3 NHE3 solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 protein-coding 13-PTNLD9-TUMOR_peak_47111 chr7 26643364 26643570 + 20.20353 NA Intergenic Intergenic -34023 NM_001145531 285941 Hs.413394 NM_001145531 ENSG00000222004 C7orf71 - chromosome 7 open reading frame 71 protein-coding 13-PTNLD9-TUMOR_peak_46950 chr7 17564024 17564266 + 20.20353 NA intron (NR_110013, intron 1 of 3) intron (NR_110013, intron 1 of 3) 34388 NR_110013 101927630 Hs.583400 NR_110013 LOC101927630 - uncharacterized LOC101927630 ncRNA 13-PTNLD9-TUMOR_peak_16830 chr15 26137319 26137529 + 20.20353 NA Intergenic Intergenic -10083 NR_040082 100128714 Hs.587854 NR_040082 ENSG00000206187 LOC100128714 - uncharacterized LOC100128714 ncRNA 13-PTNLD9-TUMOR_peak_6062 chr1 240960388 240960630 + 20.20353 NA intron (NM_001282778, intron 16 of 16) intron (NM_001282778, intron 16 of 16) -185047 NM_022469 64388 Hs.98206 NM_022469 HPRD:16390 GREM2 CKTSF1B2|DAND3|PRDC gremlin 2, DAN family BMP antagonist protein-coding 13-PTNLD9-TUMOR_peak_26378 chr2 27233722 27234009 + 20.20353 NA intron (NM_012326, intron 1 of 6) L2c|LINE|L2 -21909 NM_001083590 54867 Hs.533934 NM_017727 HPRD:07887 TMEM214 - transmembrane protein 214 protein-coding 13-PTNLD9-TUMOR_peak_3106 chr1 120758991 120759382 + 20.19240 NA Intergenic Intergenic -79819 NM_001100910 653820 Hs.339665 NM_001100910 ENSG00000188610 FAM72B p17 family with sequence similarity 72, member B protein-coding 13-PTNLD9-TUMOR_peak_22389 chr17_gl000205_random 95881 96346 + 20.17568 NA Intergenic BSR/Beta|Satellite|Satellite -20510 NR_003682 403340 Hs.572501 NR_003682 MGC70870 - C-terminal binding protein 2 pseudogene pseudo 13-PTNLD9-TUMOR_peak_11899 chr12 5195050 5195357 + 20.17554 NA Intergenic Intergenic 42118 NM_002234 3741 Hs.150208 NM_002234 HPRD:08888 KCNA5 ATFB7|HCK1|HK2|HPCN1|KV1.5|PCN1 potassium voltage-gated channel, shaker-related subfamily, member 5 protein-coding 13-PTNLD9-TUMOR_peak_46818 chr7 6322414 6322675 + 20.17416 NA Intergenic AluY|SINE|Alu -10302 NM_004227 9265 Hs.487479 NM_004227 HPRD:05469 CYTH3 ARNO3|GRP1|PSCD3 cytohesin 3 protein-coding 13-PTNLD9-TUMOR_peak_48170 chr7 82188879 82189052 + 20.17416 NA Intergenic Intergenic -115934 NM_000722 781 Hs.282151 NM_000722 HPRD:00245 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium channel, voltage-dependent, alpha 2/delta subunit 1 protein-coding 13-PTNLD9-TUMOR_peak_39037 chr4 108783823 108784231 + 20.17416 NA intron (NM_001136258, intron 2 of 6) intron (NM_001136258, intron 2 of 6) -30393 NM_152621 166929 Hs.595423 NM_152621 HPRD:11323 SGMS2 SMS2 sphingomyelin synthase 2 protein-coding 13-PTNLD9-TUMOR_peak_10436 chr11 69048571 69048796 + 20.17416 NA Intergenic Intergenic -12922 NM_001300923 26579 Hs.523848 NM_138768 HPRD:16130 MYEOV OCIM myeloma overexpressed protein-coding 13-PTNLD9-TUMOR_peak_42835 chr5 159277265 159277562 + 20.17416 NA intron (NR_109891, intron 2 of 2) intron (NR_109891, intron 2 of 2) 20978 NR_109891 101927766 Hs.638568 NR_109891 ENSG00000253311 LOC101927766 - uncharacterized LOC101927766 ncRNA 13-PTNLD9-TUMOR_peak_46515 chr6 166879693 166879985 + 20.16795 NA promoter-TSS (NR_046793) promoter-TSS (NR_046793) -968 NR_046793 100874353 Hs.675698 NR_046793 RPS6KA2-IT1 - RPS6KA2 intronic transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_54076 chr9 97691600 97691945 + 20.16795 NA intron (NM_001193329, intron 6 of 15) intron (NM_001193329, intron 6 of 15) 119528 NR_031755 100313780 NR_031755 MIR2278 - microRNA 2278 ncRNA 13-PTNLD9-TUMOR_peak_49414 chr7 141564622 141565049 + 20.16529 NA Intergenic L1MC5|LINE|L1 -23614 NM_001171951 136242 Hs.98947 NM_001008270 HPRD:17297 PRSS37 TRYX2 protease, serine, 37 protein-coding 13-PTNLD9-TUMOR_peak_43979 chr6 17418087 17418413 + 20.15703 NA intron (NM_006366, intron 1 of 12) intron (NM_006366, intron 1 of 12) 24514 NM_006366 10486 Hs.132902 NM_006366 HPRD:10808 CAP2 - CAP, adenylate cyclase-associated protein, 2 (yeast) protein-coding 13-PTNLD9-TUMOR_peak_16828 chr15 26122846 26123146 + 20.14194 NA Intergenic Intergenic -14647 NM_024490 57194 Hs.659258 NM_024490 ATP10A ATP10C|ATPVA|ATPVC ATPase, class V, type 10A protein-coding 13-PTNLD9-TUMOR_peak_1162 chr1 37119585 37119782 + 20.14194 NA Intergenic L2a|LINE|L2 -170768 NM_156039 1441 Hs.524517 NM_000760 HPRD:00737 CSF3R CD114|GCSFR colony stimulating factor 3 receptor (granulocyte) protein-coding 13-PTNLD9-TUMOR_peak_46762 chr7 4755030 4755329 + 20.14194 NA intron (NM_001037165, intron 1 of 8) intron (NM_001037165, intron 1 of 8) 33249 NM_001037165 221937 Hs.487393 NM_001037165 HPRD:18750 FOXK1 FOXK1L forkhead box K1 protein-coding 13-PTNLD9-TUMOR_peak_38127 chr4 25867306 25867536 + 20.14194 NA Intergenic Intergenic -2204 NM_001297594 23231 Hs.479384 NM_015187 HPRD:11105 SEL1L3 Sel-1L3 sel-1 suppressor of lin-12-like 3 (C. elegans) protein-coding 13-PTNLD9-TUMOR_peak_24738 chr19 35417717 35417965 + 20.12280 NA promoter-TSS (NM_194325) promoter-TSS (NM_194325) 34 NM_194325 90075 Hs.657402 NM_194325 HPRD:15763 ZNF30 KOX28 zinc finger protein 30 protein-coding 13-PTNLD9-TUMOR_peak_16990 chr15 33590924 33591142 + 20.12280 NA Intergenic Intergenic 11413 NR_120326 101928134 Hs.133851 NR_120326 LOC101928134 - uncharacterized LOC101928134 ncRNA 13-PTNLD9-TUMOR_peak_8798 chr11 1855500 1855798 + 20.12236 NA 5' UTR (NM_138567, exon 1 of 9) 5' UTR (NM_138567, exon 1 of 9) 109 NM_001290332 90019 Hs.161031 NM_138567 HPRD:09655 SYT8 - synaptotagmin VIII protein-coding 13-PTNLD9-TUMOR_peak_33725 chr3 10223233 10223702 + 20.12236 NA intron (NM_001570, intron 2 of 12) MER65A|LTR|ERV1 16904 NM_001570 3656 Hs.449207 NM_001570 HPRD:04491 IRAK2 IRAK-2 interleukin-1 receptor-associated kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_6235 chr10 504442 504774 + 20.12236 NA intron (NM_014974, intron 3 of 36) intron (NM_014974, intron 3 of 36) 183110 NR_049884 100847086 NR_049884 MIR5699 - microRNA 5699 ncRNA 13-PTNLD9-TUMOR_peak_19377 chr16 54880834 54881438 + 20.12232 NA Intergenic Intergenic 81554 NR_034106 643911 Hs.237396 NR_034105 CRNDE LINC00180|NCRNA00180 colorectal neoplasia differentially expressed (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_22101 chr17 75121507 75121861 + 20.12232 NA intron (NM_001204410, intron 2 of 17) intron (NM_001204410, intron 2 of 17) -15321 NM_001039573 6397 Hs.464184 NM_003003 HPRD:03295 SEC14L1 PRELID4A|SEC14L SEC14-like 1 (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_37013 chr3 185050235 185050542 + 20.11778 NA intron (NM_001242317, intron 2 of 12) L1MB2|LINE|L1 -30448 NM_004721 9175 Hs.591306 NM_004721 HPRD:05372 MAP3K13 LZK|MEKK13|MLK mitogen-activated protein kinase kinase kinase 13 protein-coding 13-PTNLD9-TUMOR_peak_4805 chr1 187996820 187997094 + 20.11697 NA Intergenic L2a|LINE|L2 1198925 NM_024420 5321 Hs.497200 NM_024420 HPRD:08986 PLA2G4A PLA2G4|cPLA2-alpha phospholipase A2, group IVA (cytosolic, calcium-dependent) protein-coding 13-PTNLD9-TUMOR_peak_54921 chr9 132963753 132964054 + 20.11697 NA intron (NM_014286, intron 2 of 7) intron (NM_014286, intron 2 of 7) 1031 NM_001128826 23413 Hs.642946 NM_014286 HPRD:04500 NCS1 FLUP|FREQ neuronal calcium sensor 1 protein-coding 13-PTNLD9-TUMOR_peak_6824 chr10 30471825 30472014 + 20.10621 NA Intergenic Intergenic -28862 NR_120653 101929279 Hs.559153 NR_120653 LOC101929279 - uncharacterized LOC101929279 ncRNA 13-PTNLD9-TUMOR_peak_3392 chr1 147253357 147253600 + 20.10621 NA Intergenic Intergenic -8012 NM_005266 2702 Hs.447968 NM_005266 HPRD:08699 GJA5 ATFB11|CX40 gap junction protein, alpha 5, 40kDa protein-coding 13-PTNLD9-TUMOR_peak_29741 chr2 212753297 212753464 + 20.10621 NA intron (NM_005235, intron 3 of 27) L1PA2|LINE|L1 537704 NR_031643 100313771 NR_031643 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 13-PTNLD9-TUMOR_peak_26675 chr2 41605696 41605845 + 20.10621 NA Intergenic HERVH-int|LTR|ERV1 -498925 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LOC388942 - uncharacterized LOC388942 ncRNA 13-PTNLD9-TUMOR_peak_40009 chr4 186033381 186033554 + 20.10621 NA Intergenic Intergenic -30950 NM_001151 291 Hs.246506 NM_001151 HPRD:00058 SLC25A4 1|AAC1|ANT|ANT 1|ANT1|MTDPS12|PEO2|PEO3|T1 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4 protein-coding 13-PTNLD9-TUMOR_peak_55476 chrX 1846486 1846941 + 20.08990 NA Intergenic Intergenic 112687 NM_001171039 438 Hs.522572 NM_004043 HPRD:02058 ASMT ASMTY|HIOMT|HIOMTY acetylserotonin O-methyltransferase protein-coding 13-PTNLD9-TUMOR_peak_36050 chr3 136069059 136069313 + 20.08990 NA intron (NM_005862, intron 28 of 33) L1M4b|LINE|L1 100019 NM_001178014 5096 Hs.63788 NM_000532 HPRD:01982 PCCB - propionyl CoA carboxylase, beta polypeptide protein-coding 13-PTNLD9-TUMOR_peak_56782 chrY 1796486 1796941 + 20.08990 NA Intergenic LTR16A1|LTR|ERVL 112687 NM_001171039 438 Hs.522572 NM_004043 HPRD:02058 ASMT ASMTY|HIOMT|HIOMTY acetylserotonin O-methyltransferase protein-coding 13-PTNLD9-TUMOR_peak_49350 chr7 139432047 139432407 + 20.08397 NA intron (NM_022740, intron 1 of 14) intron (NM_022740, intron 1 of 14) 45466 NM_022740 28996 Hs.731417 NM_022740 HPRD:06039 HIPK2 PRO0593 homeodomain interacting protein kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_1432 chr1 43487343 43487951 + 20.07056 NA Intergenic Intergenic -62800 NM_006516 6513 Hs.473721 NM_006516 HPRD:00683 SLC2A1 DYT17|DYT18|DYT9|EIG12|GLUT|GLUT1|GLUT1DS|HTLVR|PED solute carrier family 2 (facilitated glucose transporter), member 1 protein-coding 13-PTNLD9-TUMOR_peak_37003 chr3 184483584 184483822 + 20.07056 NA intron (NR_110043, intron 1 of 2) intron (NR_110043, intron 1 of 2) 7240 NR_110043 101928992 Hs.507129 NR_110043 ENSG00000229433 LOC101928992 - uncharacterized LOC101928992 ncRNA 13-PTNLD9-TUMOR_peak_17091 chr15 40764017 40764345 + 20.05971 NA exon (NM_130468, exon 1 of 1) exon (NM_130468, exon 1 of 1) 1021 NM_130468 113189 Hs.442449 NM_130468 HPRD:16780 CHST14 ATCS|D4ST1|EDSMC1|HNK1ST carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14 protein-coding 13-PTNLD9-TUMOR_peak_2268 chr1 81640570 81640973 + 20.05971 NA Intergenic L1M2a|LINE|L1 -524684 NM_001297704 23266 Hs.24212 NM_012302 HPRD:06116 LPHN2 CIRL2|CL2|LEC1|LPHH1 latrophilin 2 protein-coding 13-PTNLD9-TUMOR_peak_39968 chr4 184659229 184659594 + 20.04967 NA Intergenic Intergenic 78991 NM_199053 60684 Hs.443240 NM_021942 HPRD:10968 TRAPPC11 C4orf41|FOIGR|GRY|LGMD2S trafficking protein particle complex 11 protein-coding 13-PTNLD9-TUMOR_peak_50553 chr8 31547728 31548008 + 20.04418 NA intron (NM_013962, intron 1 of 4) L2a|LINE|L2 50600 NM_013962 3084 Hs.453951 NM_004495 HPRD:00802 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 13-PTNLD9-TUMOR_peak_45072 chr6 43189232 43189535 + 20.04418 NA intron (NM_015089, intron 34 of 40) intron (NM_015089, intron 34 of 40) 7828 NM_199184 10591 Hs.109752 NM_006443 HPRD:06707 DNPH1 C6orf108|RCL|dJ330M21.3 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 protein-coding 13-PTNLD9-TUMOR_peak_4475 chr1 175166703 175167040 + 20.04418 NA Intergenic Intergenic -4642 NM_001162894 9674 Hs.518138 NM_014656 HPRD:13776 KIAA0040 - KIAA0040 protein-coding 13-PTNLD9-TUMOR_peak_51995 chr8 128843929 128844102 + 20.04418 NA Intergenic L2|LINE|L2 35807 NR_031609 100302185 NR_031609 miRBase:MI0006337 MIR1204 hsa-mir-1204 microRNA 1204 ncRNA 13-PTNLD9-TUMOR_peak_28616 chr2 139535596 139535853 + 20.04418 NA intron (NM_007226, intron 1 of 1) intron (NM_007226, intron 1 of 1) 2087 NM_007226 11249 Hs.435019 NM_007226 NXPH2 NPH2 neurexophilin 2 protein-coding 13-PTNLD9-TUMOR_peak_48095 chr7 77022640 77022888 + 20.04418 NA intron (NM_017439, intron 5 of 30) L2a|LINE|L2 -21751 NR_110073 101927243 Hs.547753 NR_110073 LOC101927243 - uncharacterized LOC101927243 ncRNA 13-PTNLD9-TUMOR_peak_44100 chr6 22881318 22881490 + 20.04418 NA Intergenic Intergenic 311726 NM_138574 154150 Hs.629246 NM_138574 HPRD:17935 HDGFL1 PWWP1|dJ309H15.1 hepatoma derived growth factor-like 1 protein-coding 13-PTNLD9-TUMOR_peak_39789 chr4 161240414 161240667 + 20.04418 NA Intergenic ERVL-B4-int|LTR|ERVL 1051542 NM_014247 9693 Hs.744884 NM_014247 ENSG00000109756 RAPGEF2 CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|Rap-GEP|nRap GEP Rap guanine nucleotide exchange factor (GEF) 2 protein-coding 13-PTNLD9-TUMOR_peak_26514 chr2 31624462 31624791 + 20.04418 NA intron (NM_000379, intron 3 of 35) intron (NM_000379, intron 3 of 35) 12985 NM_000379 7498 Hs.250 NM_000379 HPRD:06363 XDH XO|XOR xanthine dehydrogenase protein-coding 13-PTNLD9-TUMOR_peak_14121 chr12 122362634 122362835 + 20.04418 NA intron (NM_001178003, intron 3 of 17) intron (NM_001178003, intron 3 of 17) 6271 NM_001178003 144406 Hs.709837 NM_144668 HPRD:14570 WDR66 CaM-IP4 WD repeat domain 66 protein-coding 13-PTNLD9-TUMOR_peak_40267 chr5 9269209 9269477 + 20.04418 NA intron (NM_003966, intron 5 of 22) intron (NM_003966, intron 5 of 22) -215336 NR_039779 100616326 NR_039779 MIR4636 - microRNA 4636 ncRNA 13-PTNLD9-TUMOR_peak_37552 chr4 980967 981540 + 20.02344 NA TTS (NM_022042) TTS (NM_022042) 468 NR_110313 3425 Hs.89560 NM_000203 HPRD:02016 IDUA IDA|MPS1 iduronidase, alpha-L- protein-coding 13-PTNLD9-TUMOR_peak_42697 chr5 151071270 151071560 + 20.02344 NA Intergenic L2a|LINE|L2 -4800 NM_003118 6678 Hs.111779 NM_003118 HPRD:01631 SPARC ON secreted protein, acidic, cysteine-rich (osteonectin) protein-coding 13-PTNLD9-TUMOR_peak_28113 chr2 113541971 113542124 + 20.02312 NA 5' UTR (NM_000575, exon 1 of 7) 5' UTR (NM_000575, exon 1 of 7) 924 NM_000575 3552 Hs.1722 NM_000575 IL1A IL-1A|IL1|IL1-ALPHA|IL1F1 interleukin 1, alpha protein-coding 13-PTNLD9-TUMOR_peak_14667 chr13 42680189 42680593 + 20.02312 NA intron (NM_178009, intron 1 of 29) AluSx|SINE|Alu -31787 NM_001297429 160851 Hs.630380 NM_152910 HPRD:07237 DGKH DGKeta diacylglycerol kinase, eta protein-coding 13-PTNLD9-TUMOR_peak_43400 chr6 1079832 1080065 + 20.02312 NA intron (NR_027115, intron 1 of 4) intron (NR_027115, intron 1 of 4) 21619 NR_027116 285768 Hs.209463 NR_027115 LOC285768 - uncharacterized LOC285768 ncRNA 13-PTNLD9-TUMOR_peak_6229 chr10 369927 370211 + 20.02312 NA intron (NM_014974, intron 31 of 36) intron (NM_014974, intron 31 of 36) 144135 NM_001202468 10771 Hs.292265 NM_006624 HPRD:09830 ZMYND11 BRAM1|BS69 zinc finger, MYND-type containing 11 protein-coding 13-PTNLD9-TUMOR_peak_35526 chr3 120574999 120575197 + 20.02312 NA Intergenic Intergenic -51952 NM_014980 9515 Hs.477315 NM_014980 ENSG00000145087 STXBP5L LLGL4 syntaxin binding protein 5-like protein-coding 13-PTNLD9-TUMOR_peak_29539 chr2 202013875 202014116 + 20.02293 NA intron (NR_040030, intron 4 of 6) intron (NR_040030, intron 4 of 6) 8520 NR_040030 65072 Hs.664613 NR_040030 ENSG00000226312 CFLAR-AS1 ALS2CR10 CFLAR antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_2508 chr1 94158539 94159114 + 20.01900 NA intron (NM_001261408, intron 3 of 13) intron (NM_001261408, intron 3 of 13) -11432 NM_003567 8412 Hs.36958 NM_003567 HPRD:05268 BCAR3 NSP2|SH2D3B breast cancer anti-estrogen resistance 3 protein-coding 13-PTNLD9-TUMOR_peak_45227 chr6 47074659 47074941 + 20.01597 NA Intergenic L2c|LINE|L2 -64718 NM_153840 266977 Hs.733762 NM_025048 HPRD:08661 GPR110 KPG_012|PGR19|hGPCR36 G protein-coupled receptor 110 protein-coding 13-PTNLD9-TUMOR_peak_10585 chr11 73020199 73020536 + 20.01268 NA exon (NM_014786, exon 1 of 21) exon (NM_014786, exon 1 of 21) 704 NM_014786 9828 Hs.533719 NM_014786 HPRD:10658 ARHGEF17 P164RHOGEF|TEM4|p164-RhoGEF Rho guanine nucleotide exchange factor (GEF) 17 protein-coding 13-PTNLD9-TUMOR_peak_37087 chr3 186708109 186708403 + 20.00829 NA intron (NM_173216, intron 2 of 7) intron (NM_173216, intron 2 of 7) -31409 NM_003032 6480 Hs.207459 NM_003032 HPRD:00184 ST6GAL1 SIAT1|ST6GalI|ST6N ST6 beta-galactosamide alpha-2,6-sialyltranferase 1 protein-coding 13-PTNLD9-TUMOR_peak_50247 chr8 21755269 21755491 + 20.00278 NA Intergenic Intergenic 15825 NM_003974 9046 Hs.71215 NM_003974 HPRD:05411 DOK2 p56DOK|p56dok-2 docking protein 2, 56kDa protein-coding 13-PTNLD9-TUMOR_peak_29629 chr2 206100254 206100418 + 19.99727 NA intron (NM_205863, intron 15 of 21) MER44B|DNA|TcMar-Tigger -446888 NM_201266 8828 Hs.471200 NM_003872 HPRD:03643 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 13-PTNLD9-TUMOR_peak_24258 chr19 16181122 16181543 + 19.99140 NA intron (NM_001145160, intron 1 of 8) intron (NM_001145160, intron 1 of 8) 3015 NM_001145160 7171 Hs.631618 NM_003290 HPRD:11734 TPM4 HEL-S-108 tropomyosin 4 protein-coding 13-PTNLD9-TUMOR_peak_36852 chr3 178341543 178341878 + 19.98293 NA intron (NM_001278911, intron 1 of 4) intron (NM_001278911, intron 1 of 4) 65222 NM_001278911 10242 Hs.478368 NM_005832 HPRD:05557 KCNMB2 - potassium large conductance calcium-activated channel, subfamily M, beta member 2 protein-coding 13-PTNLD9-TUMOR_peak_47921 chr7 73548047 73548314 + 19.98293 NA Intergenic MER41B|LTR|ERV1 -40526 NM_031992 7458 Hs.520943 NM_022170 HPRD:11940 EIF4H WBSCR1|WSCR1|eIF-4H eukaryotic translation initiation factor 4H protein-coding 13-PTNLD9-TUMOR_peak_51857 chr8 125212321 125212645 + 19.98293 NA intron (NR_125420, intron 2 of 2) intron (NR_125420, intron 2 of 2) -28720 NR_103547 157376 Hs.662360 NM_182525 HPRD:08138 FER1L6-AS2 C8orf78 FER1L6 antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_37557 chr4 1037383 1037698 + 19.98065 NA Intergenic Intergenic 31288 NM_021923 53834 Hs.193326 NM_021923 HPRD:16163 FGFRL1 FGFR5|FHFR fibroblast growth factor receptor-like 1 protein-coding 13-PTNLD9-TUMOR_peak_1540 chr1 45023536 45023807 + 19.97733 NA intron (NM_018150, intron 2 of 14) intron (NM_018150, intron 2 of 14) 12506 NR_049849 100847089 NR_049849 MIR5584 - microRNA 5584 ncRNA 13-PTNLD9-TUMOR_peak_44630 chr6 32784550 32784761 + 19.97733 NA exon (NM_002120, exon 1 of 6).4 exon (NM_002120, exon 1 of 6).4 170 NM_002120 3112 Hs.1802 NM_002120 HPRD:08368 HLA-DOB DOB major histocompatibility complex, class II, DO beta protein-coding 13-PTNLD9-TUMOR_peak_5278 chr1 206674477 206674903 + 19.97588 NA Intergenic Intergenic -6173 NM_182664 83593 Hs.497579 NM_031437 HPRD:06117 RASSF5 Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3 Ras association (RalGDS/AF-6) domain family member 5 protein-coding 13-PTNLD9-TUMOR_peak_3736 chr1 153625635 153625978 + 19.97526 NA Intergenic LTR41|LTR|ERVL -5324 NM_012437 23557 Hs.32018 NM_012437 HPRD:06111 SNAPIN BLOC1S7|BLOS7|SNAPAP SNAP-associated protein protein-coding 13-PTNLD9-TUMOR_peak_36876 chr3 179281316 179281474 + 19.96946 NA intron (NM_178042, intron 1 of 13) CpG 687 NM_178042 86 Hs.435326 NM_004301 HPRD:05389 ACTL6A ACTL6|ARPN-BETA|Arp4|BAF53A|INO80K actin-like 6A protein-coding 13-PTNLD9-TUMOR_peak_29022 chr2 169894893 169895281 + 19.96591 NA Intergenic Intergenic -7254 NM_003742 8647 Hs.658439 NM_003742 HPRD:04436 ABCB11 ABC16|BRIC2|BSEP|PFIC-2|PFIC2|PGY4|SPGP ATP-binding cassette, sub-family B (MDR/TAP), member 11 protein-coding 13-PTNLD9-TUMOR_peak_20337 chr17 5430114 5430407 + 19.96591 NA intron (NM_001033053, intron 12 of 15) intron (NM_001033053, intron 12 of 15) -25941 NM_001162371 728392 Hs.104305 NM_001162371 LOC728392 - uncharacterized LOC728392 protein-coding 13-PTNLD9-TUMOR_peak_15425 chr14 27429543 27429905 + 19.96591 NA Intergenic Intergenic 51876 NR_036193 100423019 NR_036193 miRBase:MI0015838 MIR4307 - microRNA 4307 ncRNA 13-PTNLD9-TUMOR_peak_17551 chr15 70173755 70173976 + 19.96591 NA Intergenic MIRc|SINE|MIR 46292 NR_026764 414926 Hs.569502 NR_026764 ENSG00000259703 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 13-PTNLD9-TUMOR_peak_4838 chr1 193084828 193085059 + 19.96359 NA Intergenic L1MCa|LINE|L1 -6145 NM_024529 79577 Hs.378996 NM_024529 HPRD:09581 CDC73 C1orf28|FIHP|HPTJT|HRPT1|HRPT2|HYX cell division cycle 73 protein-coding 13-PTNLD9-TUMOR_peak_38765 chr4 84437129 84437539 + 19.95794 NA Intergenic ERVL-B4-int|LTR|ERVL -19733 NM_001256422 84803 Hs.99196 NM_032717 HPRD:14417 AGPAT9 AGPAT 10|AGPAT8|GPAT3|LPAAT-theta|MAG1 1-acylglycerol-3-phosphate O-acyltransferase 9 protein-coding 13-PTNLD9-TUMOR_peak_12663 chr12 47476659 47476828 + 19.95794 NA intron (NM_001281429, intron 1 of 2) intron (NM_001281429, intron 1 of 2) -3009 NM_001143668 347902 Hs.121520 NM_181847 HPRD:16483 AMIGO2 ALI1|AMIGO-2|DEGA adhesion molecule with Ig-like domain 2 protein-coding 13-PTNLD9-TUMOR_peak_47934 chr7 73687089 73687325 + 19.93114 NA Intergenic Intergenic -16598 NM_032421 7461 Hs.647018 NM_003388 HPRD:09140 CLIP2 CLIP|CLIP-115|CYLN2|WBSCR3|WBSCR4|WSCR3|WSCR4 CAP-GLY domain containing linker protein 2 protein-coding 13-PTNLD9-TUMOR_peak_15890 chr14 58600520 58600796 + 19.92565 NA intron (NM_001001872, intron 2 of 7) MIR|SINE|MIR 18189 NM_001001872 145407 Hs.535420 NM_001001872 C14orf37 c14_5376 chromosome 14 open reading frame 37 protein-coding 13-PTNLD9-TUMOR_peak_46750 chr7 3961937 3962211 + 19.92565 NA intron (NM_152744, intron 5 of 44) intron (NM_152744, intron 5 of 44) -207243 NM_001079653 221935 Hs.653013 NM_152744 HPRD:07388 SDK1 - sidekick cell adhesion molecule 1 protein-coding 13-PTNLD9-TUMOR_peak_22094 chr17 74998323 74998679 + 19.92565 NA Intergenic Intergenic -86224 NM_001204408 6397 Hs.464184 NM_003003 HPRD:03295 SEC14L1 PRELID4A|SEC14L SEC14-like 1 (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_30370 chr20 6678757 6678987 + 19.92565 NA Intergenic Intergenic -69873 NM_001200 650 Hs.73853 NM_001200 HPRD:00206 BMP2 BDA2|BMP2A bone morphogenetic protein 2 protein-coding 13-PTNLD9-TUMOR_peak_50094 chr8 12006687 12006988 + 19.92565 NA intron (NR_027425, intron 5 of 5) L1PBa|LINE|L1 -10568 NM_201402 377630 Hs.531448 NM_201402 HPRD:16844 USP17L2 DUB-3|DUB3|USP17 ubiquitin specific peptidase 17-like family member 2 protein-coding 13-PTNLD9-TUMOR_peak_26299 chr2 23703850 23704183 + 19.92565 NA intron (NM_052920, intron 2 of 13) MER5B|DNA|hAT-Charlie 95718 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch-like family member 29 protein-coding 13-PTNLD9-TUMOR_peak_23231 chr18 52443578 52443845 + 19.92453 NA Intergenic LTR84b|LTR|ERVL -51997 NM_004163 5874 Hs.25318 NM_004163 HPRD:04846 RAB27B C25KG RAB27B, member RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_44923 chr6 39248043 39248494 + 19.92453 NA Intergenic Intergenic 33968 NM_031460 89822 Hs.162282 NM_031460 HPRD:09566 KCNK17 K2p17.1|TALK-2|TALK2|TASK-4|TASK4 potassium channel, subfamily K, member 17 protein-coding 13-PTNLD9-TUMOR_peak_487 chr1 15354581 15354920 + 19.92299 NA intron (NM_001017999, intron 2 of 7) intron (NM_001017999, intron 2 of 7) 82335 NM_001017999 23254 Hs.368823 NM_015209 HPRD:11122 KAZN KAZ kazrin, periplakin interacting protein protein-coding 13-PTNLD9-TUMOR_peak_30750 chr20 30429762 30430065 + 19.91332 NA Intergenic Intergenic 3507 NM_004118 2307 Hs.516971 NM_004118 HPRD:04246 FOXS1 FKHL18|FREAC10 forkhead box S1 protein-coding 13-PTNLD9-TUMOR_peak_5533 chr1 223906622 223906796 + 19.91083 NA intron (NM_001748, intron 2 of 20) intron (NM_001748, intron 2 of 20) 6590 NM_001748 824 Hs.350899 NM_001748 HPRD:00254 CAPN2 CANP2|CANPL2|CANPml|mCANP calpain 2, (m/II) large subunit protein-coding 13-PTNLD9-TUMOR_peak_53245 chr9 39545174 39545394 + 19.91083 NA Intergenic Intergenic -80758 NR_003528 401509 Hs.449445 NM_001032297 ENSG00000198416 ZNF658B - zinc finger protein 658B, pseudogene pseudo 13-PTNLD9-TUMOR_peak_5688 chr1 228134014 228134609 + 19.90614 NA intron (NM_003395, intron 1 of 3) intron (NM_003395, intron 1 of 3) 1365 NM_003395 7483 Hs.149504 NM_003395 WNT9A WNT14 wingless-type MMTV integration site family, member 9A protein-coding 13-PTNLD9-TUMOR_peak_31372 chr20 48207839 48208124 + 19.89439 NA Intergenic MIR|SINE|MIR -23274 NM_000961 5740 Hs.302085 NM_000961 HPRD:09046 PTGIS CYP8|CYP8A1|PGIS|PTGI prostaglandin I2 (prostacyclin) synthase protein-coding 13-PTNLD9-TUMOR_peak_33009 chr22 26718520 26718773 + 19.89171 NA intron (NM_021115, intron 9 of 16) intron (NM_021115, intron 9 of 16) -106634 NM_020437 57168 Hs.567547 NM_020437 HPRD:14255 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_15750 chr14 52104890 52105227 + 19.89171 NA intron (NM_001042481, intron 2 of 14) intron (NM_001042481, intron 2 of 14) 13404 NR_037676 145438 Hs.645410 NR_037676 FRMD6-AS1 C14orf82 FRMD6 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_14223 chr12 125110934 125111195 + 19.89171 NA Intergenic Intergenic -59054 NM_001206654 9612 Hs.137510 NM_006312 HPRD:02910 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 13-PTNLD9-TUMOR_peak_36045 chr3 135861489 135861730 + 19.89171 NA intron (NM_181897, intron 12 of 12) L2b|LINE|L2 51701 NM_001145417 55167 Hs.18631 NM_018133 HPRD:08550 MSL2 MSL-2|MSL2L1|RNF184 male-specific lethal 2 homolog (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_9254 chr11 18980004 18980359 + 19.89171 NA Intergenic Intergenic -23632 NM_147199 259249 Hs.711459 NM_147199 HPRD:06246 MRGPRX1 GPCR|MGRG2|MRGX1|SNSR4 MAS-related GPR, member X1 protein-coding 13-PTNLD9-TUMOR_peak_5664 chr1 227009014 227009297 + 19.89171 NA Intergenic Intergenic -49118 NM_012486 5664 Hs.25363 NM_000447 HPRD:02860 PSEN2 AD3L|AD4|CMD1V|PS2|STM2 presenilin 2 protein-coding 13-PTNLD9-TUMOR_peak_25965 chr2 3286167 3286732 + 19.88991 NA intron (NM_003310, intron 3 of 8) CpG 95204 NM_003310 7260 Hs.502770 NM_003310 HPRD:10287 TSSC1 - tumor suppressing subtransferable candidate 1 protein-coding 13-PTNLD9-TUMOR_peak_12965 chr12 56114790 56115178 + 19.88810 NA exon (NM_002905, exon 2 of 5) exon (NM_002905, exon 2 of 5) 833 NM_001199771 5959 Hs.600940 NM_002905 HPRD:03370 RDH5 9cRDH|HSD17B9|RDH1|SDR9C5 retinol dehydrogenase 5 (11-cis/9-cis) protein-coding 13-PTNLD9-TUMOR_peak_28154 chr2 114335962 114336589 + 19.87792 NA non-coding (NR_026821, exon 3 of 3) non-coding (NR_026821, exon 3 of 3) 1316 NR_026821 654412 Hs.640260 NR_026821 ENSG00000226516 FAM138B F379|bA395L14.6 family with sequence similarity 138, member B ncRNA 13-PTNLD9-TUMOR_peak_21763 chr17 62342238 62342644 + 19.87541 NA Intergenic Intergenic -1758 NM_018469 55852 Hs.175414 NM_018469 HPRD:13716 TEX2 HT008|TMEM96 testis expressed 2 protein-coding 13-PTNLD9-TUMOR_peak_27517 chr2 87882109 87882393 + 19.87541 NA Intergenic Intergenic -47023 NR_039634 100616499 NR_039634 miRBase:MI0016775 MIR4435-1 - microRNA 4435-1 ncRNA 13-PTNLD9-TUMOR_peak_27910 chr2 105856460 105856722 + 19.87541 NA Intergenic Intergenic -1609 NM_007227 11250 Hs.590903 NM_007227 HPRD:05325 GPR45 PSP24|PSP24(ALPHA)|PSP24A G protein-coupled receptor 45 protein-coding 13-PTNLD9-TUMOR_peak_35880 chr3 129745116 129745520 + 19.87541 NA Intergenic HERVE-int|LTR|ERV1 52082 NM_007117 7200 Hs.182231 NM_007117 HPRD:08944 TRH Pro-TRH|TRF thyrotropin-releasing hormone protein-coding 13-PTNLD9-TUMOR_peak_20353 chr17 6410132 6410463 + 19.85844 NA intron (NM_001165966, intron 2 of 18) MER45C|DNA|hAT-Tip100 49580 NM_001165966 83394 Hs.183983 NM_031220 HPRD:07498 PITPNM3 ACKR6|CORD5|NIR1|RDGBA3 PITPNM family member 3 protein-coding 13-PTNLD9-TUMOR_peak_46685 chr7 1552982 1553263 + 19.85844 NA Intergenic Intergenic -9104 NM_001080453 26173 Hs.532188 NM_001080453 ENSG00000164880 INTS1 INT1|NET28 integrator complex subunit 1 protein-coding 13-PTNLD9-TUMOR_peak_902 chr1 30273585 30273744 + 19.85515 NA Intergenic Intergenic 236795 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LOC101929406 - uncharacterized LOC101929406 ncRNA 13-PTNLD9-TUMOR_peak_10589 chr11 73205379 73205604 + 19.85515 NA intron (NM_001286051, intron 1 of 5) intron (NM_001286051, intron 1 of 5) 103743 NM_001286051 23201 Hs.475334 NM_015159 ENSG00000054965 FAM168A KIAA0280|TCRP1 family with sequence similarity 168, member A protein-coding 13-PTNLD9-TUMOR_peak_16264 chr14 75087307 75087567 + 19.83434 NA Intergenic MIRb|SINE|MIR -8403 NM_000428 4053 Hs.512776 NM_000428 HPRD:03650 LTBP2 C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3 latent transforming growth factor beta binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_32374 chr21 42308678 42309141 + 19.83434 NA Intergenic Intergenic -89870 NR_073202 1826 Hs.397800 NM_001389 HPRD:03953 DSCAM CHD2|CHD2-42|CHD2-52 Down syndrome cell adhesion molecule protein-coding 13-PTNLD9-TUMOR_peak_44317 chr6 27655915 27656263 + 19.83434 NA Intergenic Intergenic -5725 NR_038293 100507173 Hs.635987 NR_038292 LINC01012 - long intergenic non-protein coding RNA 1012 ncRNA 13-PTNLD9-TUMOR_peak_13941 chr12 116864231 116864506 + 19.83434 NA Intergenic Intergenic 1755 NR_039683 100616309 NR_039683 miRBase:MI0016824 MIR4472-2 - microRNA 4472-2 ncRNA 13-PTNLD9-TUMOR_peak_27730 chr2 97222508 97222959 + 19.83434 NA Intergenic Intergenic 20269 NM_212481 10865 Hs.920 NM_006673 HPRD:12481 ARID5A MRF-1|MRF1|RP11-363D14 AT rich interactive domain 5A (MRF1-like) protein-coding 13-PTNLD9-TUMOR_peak_8125 chr10 99581600 99582210 + 19.83434 NA Intergenic Intergenic 27650 NR_108035 100505561 Hs.351904 NR_108035 LINC00866 - long intergenic non-protein coding RNA 866 ncRNA 13-PTNLD9-TUMOR_peak_35442 chr3 114958668 114958905 + 19.82725 NA Intergenic Intergenic -92659 NM_015642 26137 Hs.202577 NM_015642 HPRD:05822 ZBTB20 DPZF|HOF|ODA-8S|ZNF288 zinc finger and BTB domain containing 20 protein-coding 13-PTNLD9-TUMOR_peak_51931 chr8 126709125 126709322 + 19.82678 NA Intergenic Intergenic 254218 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 13-PTNLD9-TUMOR_peak_54180 chr9 100908471 100909001 + 19.82678 NA intron (NM_052820, intron 2 of 11) intron (NM_052820, intron 2 of 11) 26438 NM_003389 7464 Hs.113094 NM_003389 HPRD:03695 CORO2A CLIPINB|IR10|WDR2 coronin, actin binding protein, 2A protein-coding 13-PTNLD9-TUMOR_peak_48467 chr7 99296834 99297047 + 19.81032 NA intron (NM_001256497, intron 13 of 14) intron (NM_001256497, intron 13 of 14) -19291 NM_001291829 1577 Hs.571258 NM_000777 HPRD:05617 CYP3A5 CP35|CYPIIIA5|P450PCN3|PCN3 cytochrome P450, family 3, subfamily A, polypeptide 5 protein-coding 13-PTNLD9-TUMOR_peak_52017 chr8 129195430 129195768 + 19.81032 NA Intergenic Intergenic 33237 NR_031613 100302281 NR_031613 miRBase:MI0006341 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 13-PTNLD9-TUMOR_peak_47182 chr7 30960860 30961058 + 19.81032 NA promoter-TSS (NM_001185062) promoter-TSS (NM_001185062) 44 NM_001185060 358 Hs.76152 NM_000385 HPRD:00140 AQP1 AQP-CHIP|CHIP28|CO aquaporin 1 (Colton blood group) protein-coding 13-PTNLD9-TUMOR_peak_43607 chr6 5107661 5107849 + 19.81032 NA TTS (NM_020408) TTS (NM_020408) 22035 NM_001145115 648791 Hs.653089 NM_001145115 ENSG00000219607 PPP1R3G - protein phosphatase 1, regulatory subunit 3G protein-coding 13-PTNLD9-TUMOR_peak_9567 chr11 36615915 36616362 + 19.81032 NA promoter-TSS (NM_001276722) promoter-TSS (NM_001276722) 95 NM_001276723 119710 Hs.159376 NM_138787 HPRD:14019 C11orf74 HEPIS chromosome 11 open reading frame 74 protein-coding 13-PTNLD9-TUMOR_peak_39406 chr4 139780531 139780729 + 19.81032 NA Intergenic MIR3|SINE|MIR -156283 NM_012118 25819 Hs.639842 NM_012118 HPRD:16337 CCRN4L CCR4L|Ccr4c|NOC CCR4 carbon catabolite repression 4-like (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_53279 chr9 41690192 41690412 + 19.80626 NA Intergenic Intergenic -80758 NR_003528 401509 Hs.449445 NM_001032297 ENSG00000198416 ZNF658B - zinc finger protein 658B, pseudogene pseudo 13-PTNLD9-TUMOR_peak_4231 chr1 164734942 164735152 + 19.80248 NA intron (NM_001204961, intron 2 of 7) intron (NM_001204961, intron 2 of 7) 8831 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 13-PTNLD9-TUMOR_peak_32171 chr21 34752909 34753129 + 19.80248 NA Intergenic Intergenic -22183 NM_005534 3460 Hs.634632 NM_005534 HPRD:00956 IFNGR2 AF-1|IFGR2|IFNGT1 interferon gamma receptor 2 (interferon gamma transducer 1) protein-coding 13-PTNLD9-TUMOR_peak_25674 chr19 55721453 55721774 + 19.80248 NA promoter-TSS (NM_001161440) promoter-TSS (NM_001161440) -739 NM_001161440 5794 Hs.179770 NM_002842 HPRD:03942 PTPRH R-PTP-H|SAP1 protein tyrosine phosphatase, receptor type, H protein-coding 13-PTNLD9-TUMOR_peak_49172 chr7 133514167 133514431 + 19.80248 NA intron (NM_021807, intron 11 of 17) intron (NM_021807, intron 11 of 17) -4658 NR_120513 101928861 Hs.675747 NR_120513 LOC101928861 - uncharacterized LOC101928861 ncRNA 13-PTNLD9-TUMOR_peak_25914 chr2 393789 394276 + 19.80248 NA Intergenic Intergenic -105724 NM_001002919 285016 Hs.355207 NM_001002919 HPRD:17344 FAM150B PRO1097|RGPG542 family with sequence similarity 150, member B protein-coding 13-PTNLD9-TUMOR_peak_8769 chr11 1060928 1061090 + 19.80248 NA Intergenic Intergenic -13866 NM_002457 4583 Hs.315 NM_002457 HPRD:11828 MUC2 MLP|MUC-2|SMUC mucin 2, oligomeric mucus/gel-forming protein-coding 13-PTNLD9-TUMOR_peak_15170 chr13 114600174 114600536 + 19.79988 NA intron (NM_001278674, intron 1 of 7) intron (NM_001278674, intron 1 of 7) 2279 NM_001278674 643365 Hs.740982 NM_001039767 LINC00452 - long intergenic non-protein coding RNA 452 protein-coding 13-PTNLD9-TUMOR_peak_5332 chr1 209957975 209958156 + 19.79988 NA promoter-TSS (NM_152485) promoter-TSS (NM_152485) -175 NM_152485 148304 Hs.497642 NM_152485 HPRD:08682 C1orf74 - chromosome 1 open reading frame 74 protein-coding 13-PTNLD9-TUMOR_peak_9100 chr11 12471966 12472200 + 19.79988 NA intron (NM_018222, intron 1 of 12) MLT2A2|LTR|ERVL 73057 NM_018222 55742 Hs.432914 NM_018222 PARVA CH-ILKBP|MXRA2 parvin, alpha protein-coding 13-PTNLD9-TUMOR_peak_21563 chr17 54979803 54980042 + 19.79988 NA intron (NM_005082, intron 3 of 8) intron (NM_005082, intron 3 of 8) -11206 NR_037408 100500827 NR_037408 miRBase:MI0016004 MIR3614 - microRNA 3614 ncRNA 13-PTNLD9-TUMOR_peak_17963 chr15 90708946 90709273 + 19.79988 NA Intergenic Intergenic -19043 NM_020210 10509 Hs.474935 NM_020210 HPRD:10217 SEMA4B SEMAC|SemC sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B protein-coding 13-PTNLD9-TUMOR_peak_34648 chr3 52133206 52133452 + 19.79988 NA intron (NM_015426, intron 9 of 10) intron (NM_015426, intron 9 of 10) -34201 NR_027331 100128378 Hs.640106 NM_001123039 LINC00696 C3orf74 long intergenic non-protein coding RNA 696 ncRNA 13-PTNLD9-TUMOR_peak_45344 chr6 53617756 53617932 + 19.79988 NA Intergenic Intergenic -41934 NM_018214 55227 Hs.606493 NM_018214 ENSG00000137269 LRRC1 LANO|dJ523E19.1 leucine rich repeat containing 1 protein-coding 13-PTNLD9-TUMOR_peak_36352 chr3 149304659 149304920 + 19.79988 NA intron (NM_015472, intron 2 of 6) MER21C|LTR|ERVL 71023 NM_001168280 25937 Hs.477921 NM_015472 HPRD:09580 WWTR1 TAZ WW domain containing transcription regulator 1 protein-coding 13-PTNLD9-TUMOR_peak_16523 chr14 97142624 97142785 + 19.79988 NA Intergenic MIRc|SINE|MIR -120980 NM_003384 7443 Hs.422662 NM_003384 HPRD:03701 VRK1 PCH1|PCH1A vaccinia related kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_52044 chr8 130047183 130047449 + 19.79988 NA Intergenic Intergenic 206170 NR_033916 728724 Hs.49902 NR_033916 ENSG00000250400 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 13-PTNLD9-TUMOR_peak_26778 chr2 45686418 45686603 + 19.79988 NA intron (NM_018079, intron 16 of 20) intron (NM_018079, intron 16 of 20) 151923 NM_018079 55133 Hs.14229 NM_018079 HPRD:07669 SRBD1 - S1 RNA binding domain 1 protein-coding 13-PTNLD9-TUMOR_peak_46073 chr6 133085556 133085768 + 19.79988 NA Intergenic L1MD1|LINE|L1 -1064 NM_078488 8875 Hs.293130 NM_004665 HPRD:04652 VNN2 FOAP-4|GPI-80 vanin 2 protein-coding 13-PTNLD9-TUMOR_peak_43393 chr6 1029503 1029734 + 19.79988 NA intron (NR_027115, intron 1 of 4) MSTB|LTR|ERVL-MaLR 71949 NR_027116 285768 Hs.209463 NR_027115 LOC285768 - uncharacterized LOC285768 ncRNA 13-PTNLD9-TUMOR_peak_909 chr1 30479173 30479435 + 19.79988 NA Intergenic Intergenic 31155 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LOC101929406 - uncharacterized LOC101929406 ncRNA 13-PTNLD9-TUMOR_peak_33030 chr22 27782272 27782515 + 19.79988 NA Intergenic L2c|LINE|L2 415093 NM_002430 4330 Hs.268515 NM_002430 HPRD:08862 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 meningioma (disrupted in balanced translocation) 1 protein-coding 13-PTNLD9-TUMOR_peak_30089 chr2 236419968 236420325 + 19.79988 NA intron (NM_001037131, intron 1 of 17) intron (NM_001037131, intron 1 of 17) 17413 NM_001244888 116987 Hs.435039 NM_014914 HPRD:16359 AGAP1 AGAP-1|CENTG2|GGAP1|cnt-g2 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 protein-coding 13-PTNLD9-TUMOR_peak_50180 chr8 18138404 18138543 + 19.79988 NA Intergenic MLT1E1A|LTR|ERVL-MaLR 59296 NM_001160174 9 Hs.591847 NM_000662 HPRD:00149 NAT1 AAC1|MNAT|NAT-1|NATI N-acetyltransferase 1 (arylamine N-acetyltransferase) protein-coding 13-PTNLD9-TUMOR_peak_6917 chr10 34817222 34817474 + 19.79988 NA intron (NM_001184791, intron 2 of 20) intron (NM_001184791, intron 2 of 20) 286905 NM_001184791 56288 Hs.131489 NM_019619 HPRD:05994 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 13-PTNLD9-TUMOR_peak_2919 chr1 114084838 114085046 + 19.79988 NA intron (NM_001142782, intron 1 of 20) MER44B|DNA|TcMar-Tigger 151467 NM_152900 260425 Hs.486189 NM_020965 HPRD:11290 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_25101 chr19 44809039 44809353 + 19.79988 NA promoter-TSS (NM_004234) promoter-TSS (NM_004234) -18 NM_004234 9310 Hs.613424 NM_004234 HPRD:05299 ZNF235 ANF270|HZF6|ZFP93|ZNF270 zinc finger protein 235 protein-coding 13-PTNLD9-TUMOR_peak_621 chr1 21578802 21578962 + 19.79988 NA intron (NM_001113348, intron 8 of 18) intron (NM_001113348, intron 8 of 18) 27301 NM_001113347 1889 Hs.195080 NM_001397 HPRD:02690 ECE1 ECE endothelin converting enzyme 1 protein-coding 13-PTNLD9-TUMOR_peak_15173 chr13 114740245 114740471 + 19.79988 NA Intergenic Intergenic -108394 NR_047495 100861555 Hs.353773 NR_047495 ENSG00000260910 LINC00565 - long intergenic non-protein coding RNA 565 ncRNA 13-PTNLD9-TUMOR_peak_43892 chr6 14543004 14543189 + 19.79988 NA Intergenic MIRb|SINE|MIR -257411 NR_108096 102216342 Hs.563409 NR_108096 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 13-PTNLD9-TUMOR_peak_47316 chr7 43077959 43078150 + 19.79988 NA Intergenic Intergenic -74144 NM_001287059 23072 Hs.164453 NM_015052 HECW1 NEDL1 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1 protein-coding 13-PTNLD9-TUMOR_peak_26054 chr2 9607946 9608137 + 19.79988 NA intron (NM_016207, intron 16 of 17) intron (NM_016207, intron 16 of 17) -6629 NM_001039613 285148 Hs.744980 NM_001039613 IAH1 - isoamyl acetate-hydrolyzing esterase 1 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_40553 chr5 33050039 33050261 + 19.79988 NA Intergenic L1M2a|LINE|L1 102601 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LOC340113 - uncharacterized LOC340113 ncRNA 13-PTNLD9-TUMOR_peak_26095 chr2 10545586 10545891 + 19.79823 NA intron (NM_001258357, intron 2 of 4) intron (NM_001258357, intron 2 of 4) 36848 NM_001258359 3241 Hs.580427 NM_002149 HPRD:02564 HPCAL1 BDR1|HLP2|VILIP-3 hippocalcin-like 1 protein-coding 13-PTNLD9-TUMOR_peak_37212 chr3 190105461 190105703 + 19.79492 NA promoter-TSS (NM_006580) promoter-TSS (NM_006580) -79 NM_006580 10686 Hs.251391 NM_006580 HPRD:04906 CLDN16 HOMG3|PCLN1 claudin 16 protein-coding 13-PTNLD9-TUMOR_peak_31698 chr20 56702758 56703089 + 19.78571 NA Intergenic Intergenic -23060 NM_178456 128602 Hs.43977 NM_178456 HPRD:12787 C20orf85 LLC1|bA196N14.1 chromosome 20 open reading frame 85 protein-coding 13-PTNLD9-TUMOR_peak_5672 chr1 227545028 227545376 + 19.77970 NA Intergenic LTR16A|LTR|ERVL -39376 NM_003607 8476 Hs.35433 NM_003607 HPRD:04562 CDC42BPA MRCK|MRCKA|PK428 CDC42 binding protein kinase alpha (DMPK-like) protein-coding 13-PTNLD9-TUMOR_peak_28291 chr2 121549492 121549764 + 19.77970 NA Intergenic Intergenic -5239 NM_005270 2736 Hs.111867 NM_005270 HPRD:01312 GLI2 HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 13-PTNLD9-TUMOR_peak_44454 chr6 30495524 30495949 + 19.77970 NA Intergenic Charlie7|DNA|hAT-Charlie -28750 NM_001077497 80742 Hs.118354 NM_025263 PRR3 CAT56 proline rich 3 protein-coding 13-PTNLD9-TUMOR_peak_37352 chr3 194707320 194707644 + 19.77970 NA Intergenic Intergenic -107835 NR_104188 100874528 Hs.581659 NR_104188 XXYLT1-AS1 - XXYLT1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_20161 chr16 89984277 89984498 + 19.77540 NA promoter-TSS (NM_002386) promoter-TSS (NM_002386) 100 NM_002386 4157 Hs.513829 NM_002386 HPRD:01118 MC1R CMM5|MSH-R|SHEP2 melanocortin 1 receptor (alpha melanocyte stimulating hormone receptor) protein-coding 13-PTNLD9-TUMOR_peak_37695 chr4 3956367 3956657 + 19.76475 NA intron (NR_024253, intron 1 of 5) intron (NR_024253, intron 1 of 5) 636 NR_024253 348926 Hs.591720 NR_024253 FAM86EP - family with sequence similarity 86, member A pseudogene pseudo 13-PTNLD9-TUMOR_peak_50189 chr8 18985692 18986050 + 19.76365 NA Intergenic L3|LINE|CR1 -114675 NM_015310 23362 Hs.434255 NM_015310 HPRD:11462 PSD3 EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_44005 chr6 18148546 18148757 + 19.76365 NA intron (NM_000367, intron 2 of 8) intron (NM_000367, intron 2 of 8) 6745 NM_000367 7172 Hs.444319 NM_000367 HPRD:01760 TPMT - thiopurine S-methyltransferase protein-coding 13-PTNLD9-TUMOR_peak_42719 chr5 153133703 153133978 + 19.76365 NA intron (NM_001114183, intron 11 of 15) intron (NM_001114183, intron 11 of 15) 262108 NM_001258022 2890 Hs.519693 NM_000827 HPRD:00695 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate receptor, ionotropic, AMPA 1 protein-coding 13-PTNLD9-TUMOR_peak_26515 chr2 31637669 31638128 + 19.76365 NA promoter-TSS (NM_000379) promoter-TSS (NM_000379) -287 NM_000379 7498 Hs.250 NM_000379 HPRD:06363 XDH XO|XOR xanthine dehydrogenase protein-coding 13-PTNLD9-TUMOR_peak_42838 chr5 159332549 159332922 + 19.76315 NA Intergenic L2c|LINE|L2 -11005 NM_000679 147 Hs.368632 NM_000679 ADRA1B ADRA1|ALPHA1BAR adrenoceptor alpha 1B protein-coding 13-PTNLD9-TUMOR_peak_45016 chr6 42090502 42090752 + 19.76210 NA intron (NM_001164446, intron 2 of 4) intron (NM_001164446, intron 2 of 4) 20088 NM_001164446 647024 Hs.444277 NM_001164446 ENSG00000188112 C6orf132 bA7K24.2 chromosome 6 open reading frame 132 protein-coding 13-PTNLD9-TUMOR_peak_32237 chr21 36675481 36675746 + 19.76053 NA Intergenic Intergenic -254018 NM_001754 861 Hs.149261 NM_001754 HPRD:01043 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBFA2|EVI-1|PEBP2aB runt-related transcription factor 1 protein-coding 13-PTNLD9-TUMOR_peak_39582 chr4 148567609 148567753 + 19.76053 NA intron (NM_138364, intron 9 of 11) intron (NM_138364, intron 9 of 11) 29142 NM_018241 55751 Hs.203896 NM_018241 TMEM184C TMEM34 transmembrane protein 184C protein-coding 13-PTNLD9-TUMOR_peak_47153 chr7 29662282 29662558 + 19.76053 NA Intergenic Intergenic 58024 NR_039600 100616354 NR_039600 miRBase:MI0003762 MIR550A3 - microRNA 550a-3 ncRNA 13-PTNLD9-TUMOR_peak_46654 chr7 968273 968582 + 19.74931 NA intron (NM_006869, intron 2 of 10) L1MB7|LINE|L1 -1575 NM_001284310 11033 Hs.602573 NM_006869 HPRD:09733 ADAP1 CENTA1|GCS1L|p42IP4 ArfGAP with dual PH domains 1 protein-coding 13-PTNLD9-TUMOR_peak_13000 chr12 56685274 56685611 + 19.74409 NA intron (NM_004077, intron 1 of 10) L3|LINE|CR1 8733 NM_004077 1431 Hs.743252 NM_004077 HPRD:00349 CS - citrate synthase protein-coding 13-PTNLD9-TUMOR_peak_41967 chr5 127552864 127553175 + 19.74409 NA Intergenic Intergenic 133536 NR_046207 6558 Hs.162585 NM_001046 HPRD:06775 SLC12A2 BSC|BSC2|NKCC1|PPP1R141 solute carrier family 12 (sodium/potassium/chloride transporter), member 2 protein-coding 13-PTNLD9-TUMOR_peak_49223 chr7 135005102 135005245 + 19.74409 NA Intergenic Intergenic 88442 NM_182489 346673 Hs.592279 NM_182489 HPRD:18123 STRA8 - stimulated by retinoic acid 8 protein-coding 13-PTNLD9-TUMOR_peak_29645 chr2 206723923 206724233 + 19.74409 NA Intergenic Intergenic 176854 NM_201264 8828 Hs.471200 NM_003872 HPRD:03643 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 13-PTNLD9-TUMOR_peak_41816 chr5 115787760 115788043 + 19.73525 NA intron (NR_109879, intron 2 of 2) intron (NR_109879, intron 2 of 2) 4707 NR_109879 101927233 Hs.732850 NR_109879 SEMA6A-AS1 CTB-118N6.3 SEMA6A antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_1195 chr1 38205012 38205228 + 19.71610 NA intron (NM_001099439, intron 5 of 16) AluSz|SINE|Alu 25704 NM_001099439 284656 Hs.129435 NM_173641 HPRD:08163 EPHA10 - EPH receptor A10 protein-coding 13-PTNLD9-TUMOR_peak_5713 chr1 228581008 228581363 + 19.71610 NA TTS (NM_145214) TTS (NM_145214) 3625 NR_106800 102465444 NR_106800 MIR6742 hsa-mir-6742 microRNA 6742 ncRNA 13-PTNLD9-TUMOR_peak_45772 chr6 95967230 95967546 + 19.71610 NA Intergenic MER52A|LTR|ERV1 57939 NR_104136 101927288 Hs.616643 NR_047502 MANEA-AS1 - MANEA antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_18785 chr16 23503432 23503603 + 19.71610 NA intron (NM_015044, intron 4 of 16) MER21C|LTR|ERVL 18298 NM_015044 23062 Hs.460336 NM_015044 HPRD:09347 GGA2 VEAR golgi-associated, gamma adaptin ear containing, ARF binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_52447 chr8 144678123 144678752 + 19.70855 NA intron (NM_001130055, intron 1 of 8) intron (NM_001130055, intron 1 of 8) 1121 NM_001130057 1936 Hs.333388 NM_001960 HPRD:00560 EEF1D EF-1D|EF1D|FP1047 eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) protein-coding 13-PTNLD9-TUMOR_peak_3414 chr1 147813854 147814025 + 19.70433 NA intron (NR_102404, intron 17 of 18).2 intron (NR_102404, intron 17 of 18).2 -7261 NR_049810 100847044 NR_049810 MIR5087 - microRNA 5087 ncRNA 13-PTNLD9-TUMOR_peak_42702 chr5 151119480 151119661 + 19.70391 NA Intergenic Intergenic 18640 NM_004045 475 Hs.125213 NM_004045 HPRD:03779 ATOX1 ATX1|HAH1 antioxidant 1 copper chaperone protein-coding 13-PTNLD9-TUMOR_peak_42445 chr5 142625735 142625878 + 19.70391 NA Intergenic Intergenic 157448 NM_000176 2908 Hs.122926 NM_000176 HPRD:00679 NR3C1 GCCR|GCR|GR|GRL nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) protein-coding 13-PTNLD9-TUMOR_peak_24373 chr19 18133042 18133204 + 19.70391 NA Intergenic MLT1K|LTR|ERVL-MaLR 14146 NM_001286826 27106 Hs.515249 NM_015683 HPRD:12492 ARRDC2 CLONE24945 arrestin domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_47045 chr7 22707579 22707848 + 19.69984 NA Intergenic Intergenic -2561 NR_122075 401312 Hs.583393 NR_122075 LOC401312 - uncharacterized LOC401312 ncRNA 13-PTNLD9-TUMOR_peak_13336 chr12 72104165 72104405 + 19.69984 NA Intergenic LTR78|LTR|ERV1 24407 NM_018279 55266 Hs.644802 NM_018279 HPRD:15530 TMEM19 - transmembrane protein 19 protein-coding 13-PTNLD9-TUMOR_peak_23233 chr18 52547980 52548274 + 19.69984 NA intron (NM_004163, intron 3 of 5) intron (NM_004163, intron 3 of 5) 52419 NM_004163 5874 Hs.25318 NM_004163 HPRD:04846 RAB27B C25KG RAB27B, member RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_47550 chr7 55762244 55762587 + 19.68449 NA intron (NR_003949, intron 2 of 5) intron (NR_003949, intron 2 of 5) -5262 NR_027339 360132 Hs.446691 NM_182827 HPRD:16900 FKBP9P1 FKBP9L FK506 binding protein 9 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_7632 chr10 72017578 72018013 + 19.68237 NA intron (NM_022146, intron 3 of 3) LTR5A|LTR|ERVK -24605 NM_021129 5464 Hs.437403 NM_021129 HPRD:01527 PPA1 HEL-S-66p|IOPPP|PP|PP1|SID6-8061 pyrophosphatase (inorganic) 1 protein-coding 13-PTNLD9-TUMOR_peak_36351 chr3 149293932 149294265 + 19.68237 NA intron (NM_015472, intron 2 of 6) intron (NM_015472, intron 2 of 6) 81714 NM_001168280 25937 Hs.477921 NM_015472 HPRD:09580 WWTR1 TAZ WW domain containing transcription regulator 1 protein-coding 13-PTNLD9-TUMOR_peak_5320 chr1 208357658 208358048 + 19.67696 NA intron (NM_025179, intron 3 of 31) intron (NM_025179, intron 3 of 31) 59812 NM_025179 5362 Hs.497626 NM_025179 HPRD:03033 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 13-PTNLD9-TUMOR_peak_38465 chr4 57824395 57824609 + 19.67696 NA Intergenic Intergenic 19324 NM_032313 84273 Hs.8715 NM_032313 NOA1 C4orf14|MTG3|hAtNOS1|hNOA1|mAtNOS1 nitric oxide associated 1 protein-coding 13-PTNLD9-TUMOR_peak_50327 chr8 22932176 22932467 + 19.66974 NA intron (NR_038873, intron 1 of 2) intron (NR_038873, intron 1 of 2) -5621 NM_003842 8795 Hs.521456 NM_003842 HPRD:04680 TNFRSF10B CD262|DR5|KILLER|KILLER/DR5|TRAIL-R2|TRAILR2|TRICK2|TRICK2A|TRICK2B|TRICKB|ZTNFR9 tumor necrosis factor receptor superfamily, member 10b protein-coding 13-PTNLD9-TUMOR_peak_2283 chr1 83030893 83031174 + 19.66974 NA Intergenic Intergenic 419572 NR_110632 101927498 NR_110632 ENSG00000236268 LINC01361 - long intergenic non-protein coding RNA 1361 ncRNA 13-PTNLD9-TUMOR_peak_47792 chr7 68428609 68428788 + 19.65946 NA Intergenic LTR26|LTR|ERV1 633783 NR_108105 100507468 Hs.362492 NR_108105 LOC100507468 - uncharacterized LOC100507468 ncRNA 13-PTNLD9-TUMOR_peak_25628 chr19 54545328 54545553 + 19.65946 NA exon (NM_001288793, exon 3 of 6) exon (NM_001288793, exon 3 of 6) 21767 NM_198481 284415 Hs.444431 NM_198481 HPRD:15615 VSTM1 SIRL-1|SIRL1|UNQ3033 V-set and transmembrane domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_41489 chr5 89589810 89590064 + 19.65946 NA Intergenic Intergenic -4049 NR_120601 101929495 Hs.346679 NR_120601 ENSG00000248555 LINC01339 - long intergenic non-protein coding RNA 1339 ncRNA 13-PTNLD9-TUMOR_peak_25342 chr19 49430290 49430579 + 19.65877 NA Intergenic LTR47B|LTR|ERVL -6505 NM_014475 27294 Hs.631555 NM_014475 HPRD:08399 DHDH 2DD|HUM2DD dihydrodiol dehydrogenase (dimeric) protein-coding 13-PTNLD9-TUMOR_peak_6304 chr10 3357198 3357337 + 19.65324 NA Intergenic Intergenic -142234 NM_001242307 10531 Hs.528300 NM_014889 HPRD:07142 PITRM1 MP1|PreP pitrilysin metallopeptidase 1 protein-coding 13-PTNLD9-TUMOR_peak_50758 chr8 42575628 42575874 + 19.64658 NA intron (NM_000749, intron 3 of 5) L2c|LINE|L2 23189 NM_000749 1142 Hs.654576 NM_000749 HPRD:00336 CHRNB3 - cholinergic receptor, nicotinic, beta 3 (neuronal) protein-coding 13-PTNLD9-TUMOR_peak_35276 chr3 107849975 107850203 + 19.64185 NA intron (NR_110028, intron 1 of 2) MIRc|SINE|MIR 5421 NR_110028 101929623 Hs.570653 NR_110028 LINC01215 - long intergenic non-protein coding RNA 1215 ncRNA 13-PTNLD9-TUMOR_peak_42946 chr5 169397967 169398347 + 19.63595 NA intron (NM_001129891, intron 1 of 3) intron (NM_001129891, intron 1 of 3) 9587 NM_001129891 100131897 Hs.721917 NM_001129891 ENSG00000204767 FAM196B C5orf57 family with sequence similarity 196, member B protein-coding 13-PTNLD9-TUMOR_peak_49773 chr7 154568811 154569031 + 19.63595 NA intron (NM_001290252, intron 8 of 23) L2b|LINE|L2 -151306 NR_024477 100132707 Hs.586358 NR_024476 ENSG00000214106 PAXIP1OS PAXIP1-AS2 PAXIP1 opposite strand ncRNA 13-PTNLD9-TUMOR_peak_19071 chr16 31276758 31276991 + 19.63595 NA intron (NM_000632, intron 3 of 29) intron (NM_000632, intron 3 of 29) 5586 NM_000632 3684 Hs.172631 NM_000632 HPRD:00411 ITGAM CD11B|CR3A|MAC-1|MAC1A|MO1A|SLEB6 integrin, alpha M (complement component 3 receptor 3 subunit) protein-coding 13-PTNLD9-TUMOR_peak_27879 chr2 102803368 102803606 + 19.62613 NA promoter-TSS (NM_003854) promoter-TSS (NM_003854) 54 NM_003854 8808 Hs.659863 NM_003854 HPRD:05150 IL1RL2 IL-1Rrp2|IL-36R|IL1R-rp2|IL1RRP2 interleukin 1 receptor-like 2 protein-coding 13-PTNLD9-TUMOR_peak_43796 chr6 11772725 11772956 + 19.62613 NA intron (NM_001143948, intron 1 of 6) intron (NM_001143948, intron 1 of 6) 6440 NM_001143948 84830 Hs.126409 NM_032744 HPRD:12836 ADTRP AIG1L|C6orf105|dJ413H6.1 androgen-dependent TFPI-regulating protein protein-coding 13-PTNLD9-TUMOR_peak_5404 chr1 219262341 219262585 + 19.62613 NA intron (NR_038845, intron 3 of 4) L1MA4|LINE|L1 84667 NR_038845 643723 Hs.519774 NR_038845 LYPLAL1-AS1 - LYPLAL1 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_42960 chr5 169935141 169935362 + 19.62613 NA intron (NM_014592, intron 1 of 7) intron (NM_014592, intron 1 of 7) 4211 NM_001278340 30820 Hs.484111 NM_014592 HPRD:06879 KCNIP1 KCHIP1|VABP Kv channel interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_9519 chr11 34675567 34675790 + 19.62613 NA intron (NM_001206616, intron 6 of 8) intron (NM_001206616, intron 6 of 8) 21667 NM_001206616 26298 Hs.653859 NM_012153 EHF ESE3|ESE3B|ESEJ ets homologous factor protein-coding 13-PTNLD9-TUMOR_peak_50222 chr8 20269878 20270069 + 19.62613 NA Intergenic MLT1H1|LTR|ERVL-MaLR 136689 NR_047509 100874051 Hs.385799 NR_047509 ENSG00000253733 LZTS1-AS1 - LZTS1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_51413 chr8 101743559 101743846 + 19.61478 NA Intergenic Intergenic -9387 NM_002568 26986 Hs.387804 NM_002568 HPRD:05247 PABPC1 PAB1|PABP|PABP1|PABPC2|PABPL1 poly(A) binding protein, cytoplasmic 1 protein-coding 13-PTNLD9-TUMOR_peak_49024 chr7 129170680 129170931 + 19.61478 NA Intergenic L1MB4|LINE|L1 28485 NM_001195243 100287482 Hs.178144 NM_001195243 ENSG00000240204 SMKR1 - small lysine-rich protein 1 protein-coding 13-PTNLD9-TUMOR_peak_33653 chr3 8700073 8700468 + 19.61478 NA Intergenic Intergenic -6506 NM_001256749 51066 Hs.736935 NM_015931 HPRD:11267 SSUH2 C3orf32|SSU-2|fls485 ssu-2 homolog (C. elegans) protein-coding 13-PTNLD9-TUMOR_peak_24466 chr19 19724396 19724609 + 19.60206 NA intron (NR_038198, intron 1 of 7) intron (NR_038198, intron 1 of 7) 5223 NM_025245 80714 Hs.466257 NM_025245 HPRD:16287 PBX4 - pre-B-cell leukemia homeobox 4 protein-coding 13-PTNLD9-TUMOR_peak_26563 chr2 36604264 36604604 + 19.60206 NA intron (NM_016441, intron 1 of 16) intron (NM_016441, intron 1 of 16) 21064 NM_016441 51232 Hs.699247 NM_016441 HPRD:08392 CRIM1 CRIM-1|S52 cysteine rich transmembrane BMP regulator 1 (chordin-like) protein-coding 13-PTNLD9-TUMOR_peak_6340 chr10 4713016 4713270 + 19.59360 NA intron (NR_024475, intron 1 of 3) MLT1C|LTR|ERVL-MaLR 7119 NR_024475 100216001 Hs.634869 NR_024475 ENSG00000231298 LINC00704 - long intergenic non-protein coding RNA 704 ncRNA 13-PTNLD9-TUMOR_peak_15416 chr14 25635897 25636060 + 19.59360 NA Intergenic L1ME3D|LINE|L1 -116883 NM_014178 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 amisyn syntaxin binding protein 6 (amisyn) protein-coding 13-PTNLD9-TUMOR_peak_31486 chr20 49971222 49971762 + 19.58673 NA Intergenic Intergenic 98022 NR_036162 100422889 NR_036162 MIR3194 - microRNA 3194 ncRNA 13-PTNLD9-TUMOR_peak_1073 chr1 35318370 35318551 + 19.58414 NA 3' UTR (NM_138428, exon 2 of 2) 3' UTR (NM_138428, exon 2 of 2) 6186 NM_001164824 113444 Hs.27160 NM_138428 SMIM12 C1orf212 small integral membrane protein 12 protein-coding 13-PTNLD9-TUMOR_peak_28902 chr2 161763468 161763711 + 19.58414 NA Intergenic Intergenic -229877 NM_133484 10010 Hs.132257 NM_004180 HPRD:04870 TANK I-TRAF|ITRAF|TRAF2 TRAF family member-associated NFKB activator protein-coding 13-PTNLD9-TUMOR_peak_10807 chr11 85430104 85430448 + 19.58414 NA promoter-TSS (NM_206929) promoter-TSS (NM_206929) -53 NM_206929 54843 Hs.369520 NM_032379 HPRD:10260 SYTL2 CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A synaptotagmin-like 2 protein-coding 13-PTNLD9-TUMOR_peak_30997 chr20 37245754 37245993 + 19.58414 NA intron (NM_001164431, intron 1 of 14) intron (NM_001164431, intron 1 of 14) 15296 NM_001164431 343578 Hs.451997 NM_001164431 ENSG00000124143 ARHGAP40 C20orf95|dJ1100H13.4 Rho GTPase activating protein 40 protein-coding 13-PTNLD9-TUMOR_peak_41438 chr5 81661598 81661931 + 19.58414 NA Intergenic LTR16A1|LTR|ERVL 86483 NM_001017971 92270 Hs.729805 NM_001017971 HPRD:18710 ATP6AP1L - ATPase, H+ transporting, lysosomal accessory protein 1-like protein-coding 13-PTNLD9-TUMOR_peak_11601 chr11 128422922 128423176 + 19.58414 NA intron (NM_001143820, intron 3 of 9) intron (NM_001143820, intron 3 of 9) 27012 NR_120581 101929517 Hs.562320 NR_120581 ENSG00000254588 LOC101929517 - uncharacterized LOC101929517 ncRNA 13-PTNLD9-TUMOR_peak_3024 chr1 117689636 117689965 + 19.57758 NA intron (NM_001253849, intron 5 of 5) intron (NM_001253849, intron 5 of 5) -25389 NM_025188 80263 Hs.301526 NM_025188 HPRD:15562 TRIM45 RNF99 tripartite motif containing 45 protein-coding 13-PTNLD9-TUMOR_peak_12763 chr12 51180604 51180942 + 19.57758 NA intron (NM_005171, intron 2 of 6) L1MCc|LINE|L1 22984 NM_005171 466 Hs.648565 NM_005171 HPRD:00440 ATF1 EWS-ATF1|FUS/ATF-1|TREB36 activating transcription factor 1 protein-coding 13-PTNLD9-TUMOR_peak_46733 chr7 3033619 3033761 + 19.57758 NA intron (NM_032415, intron 1 of 24) intron (NM_032415, intron 1 of 24) 49889 NM_032415 84433 Hs.648101 NM_032415 HPRD:06234 CARD11 BENTA|BIMP3|CARMA1|IMD11|PPBL caspase recruitment domain family, member 11 protein-coding 13-PTNLD9-TUMOR_peak_2598 chr1 97559899 97560140 + 19.57244 NA intron (NM_000110, intron 21 of 22) L2|LINE|L2 -1460 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_51906 chr8 126464288 126464739 + 19.57244 NA Intergenic Intergenic 20062 NM_001282985 10221 Hs.444947 NM_025195 HPRD:09863 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 13-PTNLD9-TUMOR_peak_23063 chr18 43967821 43968088 + 19.57244 NA intron (NM_001256758, intron 1 of 5) MER117|DNA|hAT-Charlie 53767 NM_001256758 494470 Hs.501114 NM_152470 ENSG00000141622 RNF165 ARKL2|RNF111L2 ring finger protein 165 protein-coding 13-PTNLD9-TUMOR_peak_51600 chr8 110605821 110606033 + 19.57244 NA intron (NM_001099754, intron 3 of 6) intron (NM_001099754, intron 3 of 6) 49492 NM_001099756 55638 Hs.390738 NM_017786 HPRD:07902 SYBU GOLSYN|OCSYN|SNPHL syntabulin (syntaxin-interacting) protein-coding 13-PTNLD9-TUMOR_peak_42197 chr5 136478436 136478694 + 19.56732 NA intron (NM_004598, intron 3 of 10) intron (NM_004598, intron 3 of 10) 356453 NM_004598 6695 Hs.596136 NM_004598 HPRD:11887 SPOCK1 SPOCK|TESTICAN|TIC1 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1 protein-coding 13-PTNLD9-TUMOR_peak_41820 chr5 116102232 116102541 + 19.56732 NA Intergenic Intergenic -4481 NR_104678 102467223 Hs.570916 NR_104678 LOC102467223 - uncharacterized LOC102467223 ncRNA 13-PTNLD9-TUMOR_peak_52597 chr9 591334 591523 + 19.56732 NA intron (NM_001256877, intron 2 of 12) L2b|LINE|L2 86733 NM_015158 23189 Hs.306764 NM_015158 HPRD:09651 KANK1 ANKRD15|CPSQ2|KANK KN motif and ankyrin repeat domains 1 protein-coding 13-PTNLD9-TUMOR_peak_42367 chr5 140888706 140888952 + 19.56181 NA intron (NM_032403, intron 3 of 3) intron (NM_032403, intron 3 of 3) 20021 NM_018929 56097 Hs.368160 NM_018929 HPRD:07318 PCDHGC5 PCDH-GAMMA-C5 protocadherin gamma subfamily C, 5 protein-coding 13-PTNLD9-TUMOR_peak_34652 chr3 52251160 52251383 + 19.56069 NA Intergenic Intergenic 8908 NM_017442 54106 Hs.87968 NM_017442 HPRD:05685 TLR9 CD289 toll-like receptor 9 protein-coding 13-PTNLD9-TUMOR_peak_44477 chr6 30727315 30727773 + 19.56069 NA Intergenic Intergenic -15217 NM_003897 8870 Hs.76095 NM_003897 HPRD:04295 IER3 DIF-2|DIF2|GLY96|IEX-1|IEX-1L|IEX1|PRG1 immediate early response 3 protein-coding 13-PTNLD9-TUMOR_peak_3285 chr1 145195927 145196205 + 19.54366 NA intron (NM_001277444, intron 20 of 24) intron (NM_001277444, intron 20 of 24) -13047 NM_203458 388677 Hs.655156 NM_203458 HPRD:14833 NOTCH2NL N2N notch 2 N-terminal like protein-coding 13-PTNLD9-TUMOR_peak_50576 chr8 33181408 33181783 + 19.53951 NA Intergenic MLT1J1|LTR|ERVL-MaLR 149069 NM_032664 84750 Hs.458713 NM_032664 ENSG00000172728 FUT10 - fucosyltransferase 10 (alpha (1,3) fucosyltransferase) protein-coding 13-PTNLD9-TUMOR_peak_45121 chr6 43970259 43970868 + 19.52148 NA exon (NM_153246, exon 4 of 4) exon (NM_153246, exon 4 of 4) 2226 NM_153246 221416 Hs.531926 NM_153246 HPRD:14640 C6orf223 - chromosome 6 open reading frame 223 protein-coding 13-PTNLD9-TUMOR_peak_36135 chr3 139253021 139253633 + 19.52127 NA intron (NM_001130992, intron 2 of 2) intron (NM_001130992, intron 2 of 2) 5344 NM_002899 5947 Hs.529571 NM_002899 HPRD:07036 RBP1 CRABP-I|CRBP|CRBP1|CRBPI|RBPC retinol binding protein 1, cellular protein-coding 13-PTNLD9-TUMOR_peak_27759 chr2 97626233 97626491 + 19.51088 NA intron (NM_001122646, intron 5 of 16) intron (NM_001122646, intron 5 of 16) 25939 NM_001122646 51252 Hs.107922 NM_016490 HPRD:14235 FAM178B - family with sequence similarity 178, member B protein-coding 13-PTNLD9-TUMOR_peak_2425 chr1 90331693 90331927 + 19.51088 NA intron (NM_001134479, intron 2 of 2) intron (NM_001134479, intron 2 of 2) 44330 NM_018103 55144 Hs.482087 NM_018103 HPRD:11287 LRRC8D LRRC5 leucine rich repeat containing 8 family, member D protein-coding 13-PTNLD9-TUMOR_peak_41777 chr5 113306793 113307039 + 19.51088 NA Intergenic Intergenic -391100 NM_021614 3781 Hs.98280 NM_021614 HPRD:09323 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2 protein-coding 13-PTNLD9-TUMOR_peak_47080 chr7 24741388 24741534 + 19.50904 NA intron (NM_004403, intron 9 of 9) intron (NM_004403, intron 9 of 9) 55622 NM_001127453 1687 Hs.520708 NM_004403 HPRD:02996 DFNA5 ICERE-1 deafness, autosomal dominant 5 protein-coding 13-PTNLD9-TUMOR_peak_29908 chr2 224127813 224128049 + 19.50901 NA Intergenic L2a|LINE|L2 211283 NM_080671 23704 Hs.348522 NM_080671 HPRD:09689 KCNE4 MIRP3 potassium voltage-gated channel, Isk-related family, member 4 protein-coding 13-PTNLD9-TUMOR_peak_53976 chr9 93862502 93862794 + 19.50901 NA Intergenic Intergenic -25234 NR_033912 100129316 Hs.458154 NR_033912 LOC100129316 - uncharacterized LOC100129316 ncRNA 13-PTNLD9-TUMOR_peak_50663 chr8 38781939 38782177 + 19.50901 NA intron (NM_021623, intron 2 of 12) LTR16A2|LTR|ERVL 23305 NM_021623 59339 Hs.369123 NM_021623 ENSG00000169499 PLEKHA2 TAPP2 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 2 protein-coding 13-PTNLD9-TUMOR_peak_31311 chr20 46756736 46756996 + 19.50901 NA Intergenic Intergenic -138005 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 13-PTNLD9-TUMOR_peak_44484 chr6 30788079 30788263 + 19.50901 NA Intergenic LTR16A|LTR|ERVL -62219 NM_001297652 780 Hs.631988 NM_001954 HPRD:02678 DDR1 CAK|CD167|DDR|EDDR1|HGK2|MCK10|NEP|NTRK4|PTK3|PTK3A|RTK6|TRKE discoidin domain receptor tyrosine kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_16854 chr15 27736089 27736302 + 19.50901 NA intron (NM_033223, intron 6 of 9) intron (NM_033223, intron 6 of 9) -329729 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 LOC101928869 - uncharacterized LOC101928869 ncRNA 13-PTNLD9-TUMOR_peak_1345 chr1 41588824 41589165 + 19.50901 NA intron (NM_001031694, intron 6 of 15) intron (NM_001031694, intron 6 of 15) 36611 NM_001172222 22955 Hs.571874 NM_012236 HPRD:11540 SCMH1 Scml3 sex comb on midleg homolog 1 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_25096 chr19 44556004 44556219 + 19.50901 NA promoter-TSS (NM_013361) promoter-TSS (NM_013361) -53 NM_013361 7766 Hs.720813 NM_013361 HPRD:15749 ZNF223 - zinc finger protein 223 protein-coding 13-PTNLD9-TUMOR_peak_2965 chr1 115973489 115973684 + 19.50901 NA Intergenic Intergenic -92729 NM_002506 4803 Hs.2561 NM_002506 HPRD:08874 NGF Beta-NGF|HSAN5|NGFB nerve growth factor (beta polypeptide) protein-coding 13-PTNLD9-TUMOR_peak_53146 chr9 36102433 36102707 + 19.50901 NA intron (NM_021111, intron 12 of 20) intron (NM_021111, intron 12 of 20) -33963 NR_104641 152007 Hs.493819 NM_022343 HPRD:06187 GLIPR2 C9orf19|GAPR-1|GAPR1 GLI pathogenesis-related 2 protein-coding 13-PTNLD9-TUMOR_peak_52084 chr8 131495560 131495837 + 19.50901 NA Intergenic Intergenic -39792 NM_018482 50807 Hs.655552 NM_018482 HPRD:05809 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 13-PTNLD9-TUMOR_peak_21909 chr17 70936702 70937104 + 19.50901 NA intron (NM_139177, intron 5 of 9) intron (NM_139177, intron 5 of 9) 151950 NM_139177 201266 Hs.221127 NM_139177 HPRD:15383 SLC39A11 C17orf26|ZIP11 solute carrier family 39, member 11 protein-coding 13-PTNLD9-TUMOR_peak_26270 chr2 20695860 20696165 + 19.50901 NA Intergenic Intergenic 49177 NM_004040 388 Hs.502876 NM_004040 HPRD:01321 RHOB ARH6|ARHB|MST081|MSTP081|RHOH6 ras homolog family member B protein-coding 13-PTNLD9-TUMOR_peak_48765 chr7 106410697 106411013 + 19.50653 NA Intergenic L3|LINE|CR1 -94868 NM_001282426 5294 Hs.32942 NM_002649 HPRD:03135 PIK3CG PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma protein-coding 13-PTNLD9-TUMOR_peak_13856 chr12 111372338 111372562 + 19.50653 NA Intergenic Intergenic -1956 NR_036513 100131138 Hs.152129 NR_036513 ENSG00000185847 LINC01405 - long intergenic non-protein coding RNA 1405 ncRNA 13-PTNLD9-TUMOR_peak_11060 chr11 102423257 102423566 + 19.50653 NA Intergenic Intergenic -21933 NM_002423 4316 Hs.2256 NM_002423 HPRD:01525 MMP7 MMP-7|MPSL1|PUMP-1 matrix metallopeptidase 7 (matrilysin, uterine) protein-coding 13-PTNLD9-TUMOR_peak_48008 chr7 75535199 75535447 + 19.50653 NA Intergenic Intergenic -9097 NM_000941 5447 Hs.354056 NM_000941 HPRD:00485 POR CPR|CYPOR|P450R P450 (cytochrome) oxidoreductase protein-coding 13-PTNLD9-TUMOR_peak_36986 chr3 184166652 184167071 + 19.50653 NA Intergenic ERVL-B4-int|LTR|ERVL 69000 NM_003741 8646 Hs.166186 NM_003741 HPRD:04592 CHRD - chordin protein-coding 13-PTNLD9-TUMOR_peak_25490 chr19 51513761 51513924 + 19.50653 NA promoter-TSS (NM_012315) promoter-TSS (NM_012315) -952 NM_012315 284366 Hs.448942 NM_012315 HPRD:05692 KLK9 KLK-L3|KLKL3 kallikrein-related peptidase 9 protein-coding 13-PTNLD9-TUMOR_peak_36286 chr3 146224484 146224884 + 19.49263 NA Intergenic LTR54|LTR|ERV1 -10906 NM_001199979 57047 Hs.744414 NM_020359 HPRD:09621 PLSCR2 - phospholipid scramblase 2 protein-coding 13-PTNLD9-TUMOR_peak_49578 chr7 149052368 149052933 + 19.46231 NA Intergenic Intergenic 70278 NR_036573 155060 Hs.490512 NR_015357 HPRD:17309 LOC155060 - AI894139 pseudogene pseudo 13-PTNLD9-TUMOR_peak_32661 chr22 18056461 18056912 + 19.45162 NA intron (NM_031481, intron 2 of 10) intron (NM_031481, intron 2 of 10) 13503 NM_031481 83733 Hs.282982 NM_031481 HPRD:15355 SLC25A18 GC2 solute carrier family 25 (glutamate carrier), member 18 protein-coding 13-PTNLD9-TUMOR_peak_49282 chr7 137559158 137559398 + 19.45162 NA TTS (NM_194071) TTS (NM_194071) -27669 NM_004717 9162 Hs.242947 NM_004717 HPRD:07238 DGKI DGK-IOTA diacylglycerol kinase, iota protein-coding 13-PTNLD9-TUMOR_peak_34099 chr3 24633166 24633520 + 19.45061 NA Intergenic Intergenic -70417 NR_039955 100616448 NR_039955 miRBase:MI0017439 MIR4792 miR-4792 microRNA 4792 ncRNA 13-PTNLD9-TUMOR_peak_9990 chr11 61040624 61040947 + 19.45061 NA exon (NM_152718, exon 13 of 20) exon (NM_152718, exon 13 of 20) 22003 NM_152718 220001 Hs.60640 NM_152718 HPRD:08116 VWCE URG11|VWC1 von Willebrand factor C and EGF domains protein-coding 13-PTNLD9-TUMOR_peak_7460 chr10 61624874 61625166 + 19.45061 NA intron (NM_005436, intron 1 of 8) intron (NM_005436, intron 1 of 8) 41394 NM_005436 8030 Hs.591360 NM_005436 HPRD:09064 CCDC6 D10S170|H4|PTC|TPC|TST1 coiled-coil domain containing 6 protein-coding 13-PTNLD9-TUMOR_peak_9647 chr11 45001271 45001788 + 19.45033 NA Intergenic Intergenic 6076 NR_026681 221122 Hs.551656 NR_026681 ENSG00000254654 LOC221122 - uncharacterized LOC221122 ncRNA 13-PTNLD9-TUMOR_peak_43065 chr5 172839674 172839956 + 19.44707 NA Intergenic Intergenic 65357 NR_107023 102465862 NR_107023 MIR8056 hsa-mir-8056 microRNA 8056 ncRNA 13-PTNLD9-TUMOR_peak_14164 chr12 123402160 123402464 + 19.44707 NA Intergenic Intergenic -21600 NM_024667 79720 Hs.507162 NM_024667 HPRD:07794 VPS37B - vacuolar protein sorting 37 homolog B (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_14230 chr12 125185821 125186054 + 19.44707 NA Intergenic Intergenic -133927 NM_001206654 9612 Hs.137510 NM_006312 HPRD:02910 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 13-PTNLD9-TUMOR_peak_48055 chr7 76075028 76075379 + 19.44505 NA Intergenic Intergenic -15769 NM_001102594 113878 Hs.187058 NM_020892 HPRD:16841 DTX2 RNF58 deltex 2, E3 ubiquitin ligase protein-coding 13-PTNLD9-TUMOR_peak_43040 chr5 172228137 172228525 + 19.44505 NA Intergenic Intergenic -30128 NM_004417 1843 Hs.171695 NM_004417 HPRD:02835 DUSP1 CL100|HVH1|MKP-1|MKP1|PTPN10 dual specificity phosphatase 1 protein-coding 13-PTNLD9-TUMOR_peak_11208 chr11 111859887 111860104 + 19.44178 NA intron (NM_001037954, intron 10 of 19) intron (NM_001037954, intron 10 of 19) 11962 NM_033425 85458 Hs.655626 NM_033425 HPRD:16804 DIXDC1 CCD1 DIX domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_11926 chr12 5918292 5918543 + 19.44178 NA intron (NM_001278596, intron 7 of 25) intron (NM_001278596, intron 7 of 25) 136008 NM_001278596 57101 Hs.148970 NM_020373 HPRD:11634 ANO2 C12orf3|TMEM16B anoctamin 2, calcium activated chloride channel protein-coding 13-PTNLD9-TUMOR_peak_43802 chr6 11921301 11921557 + 19.43541 NA Intergenic Intergenic -91295 NM_002114 3096 Hs.567284 NM_002114 HPRD:01925 HIVEP1 CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A human immunodeficiency virus type I enhancer binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_51953 chr8 127658930 127659219 + 19.43541 NA Intergenic MLT2B1|LTR|ERVL -88363 NM_174911 157638 Hs.741352 NM_174911 HPRD:11403 FAM84B BCMP101|NSE2 family with sequence similarity 84, member B protein-coding 13-PTNLD9-TUMOR_peak_50434 chr8 27441249 27441465 + 19.43541 NA Intergenic Intergenic 26911 NR_106902 102465508 NR_106902 MIR6843 hsa-mir-6843 microRNA 6843 ncRNA 13-PTNLD9-TUMOR_peak_32269 chr21 38156386 38156611 + 19.43541 NA intron (NM_001242785, intron 7 of 11) intron (NM_001242785, intron 7 of 11) 84507 NM_009586 6493 Hs.146186 NM_005069 HPRD:02935 SIM2 HMC13F06|HMC29C01|SIM|bHLHe15 single-minded family bHLH transcription factor 2 protein-coding 13-PTNLD9-TUMOR_peak_38039 chr4 16142565 16142922 + 19.43541 NA Intergenic Intergenic -57120 NM_001145848 8842 Hs.614734 NM_006017 HPRD:05079 PROM1 AC133|CD133|CORD12|MCDR2|PROML1|RP41|STGD4 prominin 1 protein-coding 13-PTNLD9-TUMOR_peak_16339 chr14 77843300 77843497 + 19.43047 NA promoter-TSS (NM_213601) promoter-TSS (NM_213601) -2 NM_213601 283578 Hs.26403 NM_213601 TMED8 FAM15B transmembrane emp24 protein transport domain containing 8 protein-coding 13-PTNLD9-TUMOR_peak_858 chr1 28640619 28640803 + 19.43047 NA Intergenic Intergenic -14802 NM_001127350 54797 Hs.479911 NM_017638 HPRD:17476 MED18 p28b mediator complex subunit 18 protein-coding 13-PTNLD9-TUMOR_peak_16200 chr14 71249249 71249462 + 19.43047 NA intron (NM_001284231, intron 1 of 11) intron (NM_001284231, intron 1 of 11) 814 NM_001284232 4293 Hs.445496 NM_033141 HPRD:15965 MAP3K9 MEKK9|MLK1|PRKE1 mitogen-activated protein kinase kinase kinase 9 protein-coding 13-PTNLD9-TUMOR_peak_38103 chr4 24659632 24659960 + 19.43047 NA Intergenic Intergenic -73612 NM_001358 1665 Hs.696074 NM_001358 HPRD:04553 DHX15 DBP1|DDX15|HRH2|PRP43|PRPF43|PrPp43p DEAH (Asp-Glu-Ala-His) box helicase 15 protein-coding 13-PTNLD9-TUMOR_peak_2516 chr1 94205145 94205384 + 19.42142 NA intron (NM_001261408, intron 2 of 13) intron (NM_001261408, intron 2 of 13) -57870 NM_003567 8412 Hs.36958 NM_003567 HPRD:05268 BCAR3 NSP2|SH2D3B breast cancer anti-estrogen resistance 3 protein-coding 13-PTNLD9-TUMOR_peak_25241 chr19 47818643 47818879 + 19.39834 NA intron (NM_001736, intron 1 of 1) intron (NM_001736, intron 1 of 1) 5657 NM_001736 728 Hs.2161 NM_001736 HPRD:00224 C5AR1 C5A|C5AR|C5R1|CD88 complement component 5a receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_21766 chr17 62403692 62404354 + 19.39781 NA intron (NM_000442, intron 1 of 1) intron (NM_000442, intron 1 of 1) 3060 NM_000442 5175 Hs.376675 NM_000442 PECAM1 CD31|CD31/EndoCAM|GPIIA'|PECA1|PECAM-1|endoCAM platelet/endothelial cell adhesion molecule 1 protein-coding 13-PTNLD9-TUMOR_peak_5654 chr1 226850502 226850958 + 19.39330 NA intron (NR_103784, intron 1 of 1) intron (NR_103784, intron 1 of 1) 12039 NR_103784 100506443 Hs.664293 NR_103784 ITPKB-IT1 - ITPKB intronic transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_5618 chr1 225934644 225934840 + 19.39330 NA Intergenic Intergenic -30773 NM_003133 6726 Hs.511425 NM_003133 HPRD:02830 SRP9 ALURBP signal recognition particle 9kDa protein-coding 13-PTNLD9-TUMOR_peak_37377 chr3 195385300 195385529 + 19.39121 NA intron (NR_003265, intron 1 of 14) CpG 504 NR_003265 727956 Hs.596261 NR_003265 ENSG00000242086 SDHAP2 SDHAL2|SDHALP2 succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_44547 chr6 31548731 31548898 + 19.37377 NA exon (NM_002341, exon 4 of 4) exon (NM_002341, exon 4 of 4) 1388 NM_002341 4050 Hs.376208 NM_002341 HPRD:02987 LTB TNFC|TNFSF3|p33 lymphotoxin beta (TNF superfamily, member 3) protein-coding 13-PTNLD9-TUMOR_peak_707 chr1 24563272 24563603 + 19.37377 NA Intergenic L2c|LINE|L2 36707 NR_027087 284632 Hs.638906 NR_027087 ENSG00000230023 LOC284632 - uncharacterized LOC284632 ncRNA 13-PTNLD9-TUMOR_peak_5099 chr1 203539211 203539474 + 19.36108 NA Intergenic Intergenic -56573 NM_001001396 493 Hs.343522 NM_001684 HPRD:00159 ATP2B4 ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x ATPase, Ca++ transporting, plasma membrane 4 protein-coding 13-PTNLD9-TUMOR_peak_40376 chr5 14234392 14234651 + 19.36108 NA intron (NM_007118, intron 1 of 56) intron (NM_007118, intron 1 of 56) 90692 NM_007118 7204 Hs.130031 NM_007118 HPRD:03537 TRIO ARHGEF23|tgat trio Rho guanine nucleotide exchange factor protein-coding 13-PTNLD9-TUMOR_peak_11362 chr11 118065948 118066231 + 19.36108 NA intron (NR_104479, intron 8 of 8) intron (NR_104479, intron 8 of 8) 17985 NM_153206 120425 Hs.16291 NM_153206 HPRD:16482 AMICA1 AMICA|CREA7-1|CREA7-4|Gm638|JAML adhesion molecule, interacts with CXADR antigen 1 protein-coding 13-PTNLD9-TUMOR_peak_11648 chr11 129994056 129994230 + 19.36108 NA intron (NM_001142276, intron 7 of 16) intron (NM_001142276, intron 7 of 16) -35539 NM_021978 6768 Hs.504315 NM_021978 HPRD:06005 ST14 ARCI11|HAI|MT-SP1|MTSP1|PRSS14|SNC19|TADG15|TMPRSS14 suppression of tumorigenicity 14 (colon carcinoma) protein-coding 13-PTNLD9-TUMOR_peak_53263 chr9 41009304 41009701 + 19.34987 NA Intergenic Intergenic -217390 NM_033160 26149 Hs.522147 NM_033160 HPRD:11342 ZNF658 - zinc finger protein 658 protein-coding 13-PTNLD9-TUMOR_peak_51973 chr8 128352329 128352644 + 19.34888 NA intron (NR_117099, intron 3 of 3) L2a|LINE|L2 -60158 NR_109834 101805488 Hs.745578 NR_109834 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_41288 chr5 73920461 73920690 + 19.34888 NA Intergenic Intergenic -15273 NM_001292004 3074 Hs.69293 NM_000521 HPRD:06043 HEXB ENC-1AS|HEL-248 hexosaminidase B (beta polypeptide) protein-coding 13-PTNLD9-TUMOR_peak_20852 chr17 31594337 31594603 + 19.34888 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 25536 NM_183377 40 Hs.368417 NM_001094 HPRD:03471 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid-sensing (proton-gated) ion channel 2 protein-coding 13-PTNLD9-TUMOR_peak_38454 chr4 57167715 57167905 + 19.34888 NA intron (NM_020722, intron 4 of 10) intron (NM_020722, intron 4 of 10) 85864 NM_001286669 132949 Hs.104347 NM_181806 HPRD:12398 AASDH ACSF4|LYS2|NRPS1098|NRPS998 aminoadipate-semialdehyde dehydrogenase protein-coding 13-PTNLD9-TUMOR_peak_32440 chr21 44056642 44056872 + 19.34888 NA Intergenic Intergenic -17105 NM_001001571 5152 Hs.473927 NM_002606 HPRD:09115 PDE9A HSPDE9A2 phosphodiesterase 9A protein-coding 13-PTNLD9-TUMOR_peak_28376 chr2 128266318 128266534 + 19.34888 NA intron (NM_017969, intron 2 of 13) intron (NM_017969, intron 2 of 13) 17661 NM_017969 55677 Hs.469879 NM_017969 HPRD:07639 IWS1 - IWS1 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_9022 chr11 10144393 10144663 + 19.34888 NA intron (NM_030962, intron 2 of 39) intron (NM_030962, intron 2 of 39) 171226 NM_030962 81846 Hs.577252 NM_030962 HPRD:09649 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 13-PTNLD9-TUMOR_peak_27062 chr2 64503546 64503713 + 19.34660 NA Intergenic Intergenic 48094 NR_120420 100507006 Hs.442789 NR_120420 LOC100507006 - uncharacterized LOC100507006 ncRNA 13-PTNLD9-TUMOR_peak_86 chr1 1440424 1440642 + 19.34660 NA Intergenic LTR13|LTR|ERVK -6990 NM_018188 55210 Hs.23413 NM_018188 HPRD:12500 ATAD3A - ATPase family, AAA domain containing 3A protein-coding 13-PTNLD9-TUMOR_peak_6566 chr10 16482840 16483031 + 19.34660 NA intron (NM_001001484, intron 2 of 5) intron (NM_001001484, intron 2 of 5) 3993 NM_030664 9317 Hs.444321 NM_030664 HPRD:16061 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 13-PTNLD9-TUMOR_peak_23163 chr18 47624005 47624413 + 19.34660 NA intron (NM_001080467, intron 1 of 39) intron (NM_001080467, intron 1 of 39) 28724 NR_036204 100422865 NR_036204 MIR4320 - microRNA 4320 ncRNA 13-PTNLD9-TUMOR_peak_29248 chr2 181232627 181232831 + 19.34503 NA Intergenic Intergenic -324102 NR_104322 101669767 NR_104319 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_13229 chr12 67910947 67911219 + 19.34503 NA Intergenic Intergenic -2779 NR_103861 100507175 Hs.505986 NR_103861 ENSG00000203585 LOC100507175 - uncharacterized LOC100507175 ncRNA 13-PTNLD9-TUMOR_peak_32859 chr22 21983626 21983842 + 19.33775 NA intron (NM_001017964, intron 2 of 4) CpG-17595 606 NM_001017964 150223 Hs.355952 NM_001017964 HPRD:18559 YDJC - YdjC homolog (bacterial) protein-coding 13-PTNLD9-TUMOR_peak_5992 chr1 236080798 236081039 + 19.33574 NA Intergenic Intergenic -33910 NM_001301365 1130 Hs.532411 NM_000081 HPRD:06060 LYST CHS|CHS1 lysosomal trafficking regulator protein-coding 13-PTNLD9-TUMOR_peak_31282 chr20 46081927 46082442 + 19.33574 NA Intergenic MLT1F|LTR|ERVL-MaLR -48417 NM_001174087 8202 Hs.592142 NM_006534 HPRD:03570 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 13-PTNLD9-TUMOR_peak_21295 chr17 45282987 45283304 + 19.32248 NA Intergenic Intergenic -3283 NM_001002841 4635 Hs.463300 NM_002476 HPRD:01176 MYL4 ALC1|AMLC|GT1 myosin, light chain 4, alkali; atrial, embryonic protein-coding 13-PTNLD9-TUMOR_peak_49486 chr7 143088956 143089462 + 19.32171 NA intron (NM_005232, intron 16 of 17) intron (NM_005232, intron 16 of 17) 9430 NR_106952 102465538 NR_106952 MIR6892 hsa-mir-6892 microRNA 6892 ncRNA 13-PTNLD9-TUMOR_peak_24402 chr19 18491245 18491441 + 19.30599 NA Intergenic Intergenic -5625 NM_004864 9518 Hs.616962 NM_004864 HPRD:05608 GDF15 GDF-15|MIC-1|MIC1|NAG-1|PDF|PLAB|PTGFB growth differentiation factor 15 protein-coding 13-PTNLD9-TUMOR_peak_33959 chr3 16110691 16110953 + 19.30599 NA Intergenic Intergenic -105362 NM_054110 117248 Hs.411308 NM_054110 HPRD:13563 GALNT15 GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5 polypeptide N-acetylgalactosaminyltransferase 15 protein-coding 13-PTNLD9-TUMOR_peak_709 chr1 24620904 24621124 + 19.30599 NA Intergenic Intergenic -24798 NM_198173 57822 Hs.657920 NM_021180 HPRD:12210 GRHL3 SOM|TFCP2L4|VWS2 grainyhead-like 3 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_48093 chr7 76956482 76956893 + 19.30462 NA intron (NM_017439, intron 22 of 30) intron (NM_017439, intron 22 of 30) -87828 NR_110073 101927243 Hs.547753 NR_110073 LOC101927243 - uncharacterized LOC101927243 ncRNA 13-PTNLD9-TUMOR_peak_11372 chr11 118493781 118493979 + 19.30388 NA intron (NM_001144759, intron 4 of 20) intron (NM_001144759, intron 4 of 20) 15574 NM_001144758 23187 Hs.504062 NM_015157 HPRD:15128 PHLDB1 LL5A pleckstrin homology-like domain, family B, member 1 protein-coding 13-PTNLD9-TUMOR_peak_36959 chr3 183886243 183886831 + 19.30388 NA intron (NM_004423, intron 13 of 14) intron (NM_004423, intron 13 of 14) -6097 NM_001025205 1173 Hs.518460 NM_004068 HPRD:03014 AP2M1 AP50|CLAPM1|mu2 adaptor-related protein complex 2, mu 1 subunit protein-coding 13-PTNLD9-TUMOR_peak_44297 chr6 27219555 27219885 + 19.30280 NA exon (NM_005865, exon 8 of 12) exon (NM_005865, exon 8 of 12) 4218 NM_005865 10279 Hs.274407 NM_005865 HPRD:06205 PRSS16 TSSP protease, serine, 16 (thymus) protein-coding 13-PTNLD9-TUMOR_peak_24950 chr19 39921419 39921762 + 19.30280 NA Intergenic MER6B|DNA|TcMar-Tigger 5028 NM_001020 6217 Hs.397609 NM_001020 HPRD:04724 RPS16 S16 ribosomal protein S16 protein-coding 13-PTNLD9-TUMOR_peak_24758 chr19 35809841 35810326 + 19.30050 NA Intergenic Intergenic -9986 NM_001278417 933 Hs.579691 NM_001771 HPRD:00114 CD22 SIGLEC-2|SIGLEC2 CD22 molecule protein-coding 13-PTNLD9-TUMOR_peak_24756 chr19 35760479 35760729 + 19.30050 NA intron (NM_207291, intron 3 of 8) CpG-13509 708 NM_207291 7392 Hs.454534 NM_003367 HPRD:02668 USF2 FIP|bHLHb12 upstream transcription factor 2, c-fos interacting protein-coding 13-PTNLD9-TUMOR_peak_1361 chr1 41898420 41898870 + 19.29644 NA Intergenic Intergenic 51699 NM_001956 1907 Hs.1407 NM_001956 HPRD:07173 EDN2 ET2|PPET2 endothelin 2 protein-coding 13-PTNLD9-TUMOR_peak_43658 chr6 6882119 6882391 + 19.29184 NA Intergenic L3|LINE|CR1 -225575 NM_001168344 6239 Hs.298248 NM_002955 HPRD:03733 RREB1 FINB|HNT|LZ321|RREB-1|Zep-1 ras responsive element binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_21881 chr17 67604919 67605212 + 19.28824 NA intron (NR_109971, intron 2 of 5) intron (NR_109971, intron 2 of 5) 14937 NR_109972 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 13-PTNLD9-TUMOR_peak_2652 chr1 101087599 101087922 + 19.28824 NA Intergenic Intergenic 24800 NR_038914 100128787 Hs.536050 NR_038914 LINC01349 - long intergenic non-protein coding RNA 1349 ncRNA 13-PTNLD9-TUMOR_peak_1845 chr1 54738728 54739327 + 19.28481 NA intron (NM_145716, intron 5 of 17) (CACG)n|Simple_repeat|Simple_repeat 36911 NR_103541 619518 Hs.591438 NM_001034847 SSBP3-AS1 C1orf191|MST128 SSBP3 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_18220 chr16 2058063 2058386 + 19.28481 NA intron (NM_178167, intron 3 of 13) intron (NM_178167, intron 3 of 13) 1598 NM_178167 90850 Hs.343828 NM_178167 HPRD:11732 ZNF598 - zinc finger protein 598 protein-coding 13-PTNLD9-TUMOR_peak_46593 chr6 170534568 170534893 + 19.27864 NA Intergenic Intergenic 36927 NR_002787 154449 Hs.447751 NR_002787 ENSG00000230960 LOC154449 - uncharacterized LOC154449 ncRNA 13-PTNLD9-TUMOR_peak_49673 chr7 151249625 151249855 + 19.27864 NA Intergenic Intergenic -32730 NM_005614 6009 Hs.283521 NM_005614 HPRD:03188 RHEB RHEB2 Ras homolog enriched in brain protein-coding 13-PTNLD9-TUMOR_peak_50223 chr8 20434474 20434678 + 19.26863 NA Intergenic Intergenic 301292 NR_047509 100874051 Hs.385799 NR_047509 ENSG00000253733 LZTS1-AS1 - LZTS1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_47502 chr7 51924999 51925332 + 19.26077 NA Intergenic Intergenic -540650 NM_001287436 23242 Hs.99141 NM_015198 HPRD:10843 COBL - cordon-bleu WH2 repeat protein protein-coding 13-PTNLD9-TUMOR_peak_17067 chr15 40391044 40391233 + 19.26077 NA intron (NM_001003943, intron 3 of 3) intron (NM_001003943, intron 3 of 3) 7149 NM_001003942 90427 Hs.591104 NM_033503 HPRD:05881 BMF - Bcl2 modifying factor protein-coding 13-PTNLD9-TUMOR_peak_47937 chr7 73726990 73727336 + 19.26077 NA intron (NM_003388, intron 1 of 16) intron (NM_003388, intron 1 of 16) 23358 NM_003388 7461 Hs.647018 NM_003388 HPRD:09140 CLIP2 CLIP|CLIP-115|CYLN2|WBSCR3|WBSCR4|WSCR3|WSCR4 CAP-GLY domain containing linker protein 2 protein-coding 13-PTNLD9-TUMOR_peak_41575 chr5 96143556 96143764 + 19.25103 NA 5' UTR (NM_016442, exon 1 of 20) 5' UTR (NM_016442, exon 1 of 20) 232 NM_001040458 51752 Hs.666524 NM_016442 HPRD:06015 ERAP1 A-LAP|ALAP|APPILS|ARTS-1|ARTS1|ERAAP|ERAAP1|PILS-AP|PILSAP endoplasmic reticulum aminopeptidase 1 protein-coding 13-PTNLD9-TUMOR_peak_52811 chr9 16442772 16442961 + 19.23980 NA intron (NM_017637, intron 5 of 6) AluSx1|SINE|Alu -166555 NR_073471 100129385 Hs.586441 NM_001271829 ENSG00000205549 C9orf92 Em:AL513424.1 chromosome 9 open reading frame 92 protein-coding 13-PTNLD9-TUMOR_peak_54642 chr9 123614974 123615171 + 19.23980 NA non-coding (NR_024408, exon 4 of 4) non-coding (NR_024408, exon 4 of 4) 9752 NR_024408 253039 Hs.594170 NR_024408 ENSG00000226752 PSMD5-AS1 - PSMD5 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_42195 chr5 136410935 136411104 + 19.23980 NA intron (NM_004598, intron 5 of 10) intron (NM_004598, intron 5 of 10) 423999 NM_004598 6695 Hs.596136 NM_004598 HPRD:11887 SPOCK1 SPOCK|TESTICAN|TIC1 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1 protein-coding 13-PTNLD9-TUMOR_peak_12759 chr12 51013089 51013364 + 19.23980 NA intron (NM_173602, intron 1 of 37) intron (NM_173602, intron 1 of 37) 114458 NM_173602 57609 Hs.505516 NM_020849 HPRD:08751 DIP2B - DIP2 disco-interacting protein 2 homolog B (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_50339 chr8 23202823 23203145 + 19.23980 NA intron (NM_002318, intron 3 of 13) intron (NM_002318, intron 3 of 13) 9263 NR_038323 100507156 Hs.661130 NR_038323 ENSG00000253837 LOC100507156 - uncharacterized LOC100507156 ncRNA 13-PTNLD9-TUMOR_peak_33712 chr3 9987988 9988366 + 19.23903 NA promoter-TSS (NR_046734) promoter-TSS (NR_046734) -911 NR_046734 100874032 Hs.616388 NR_046734 ENSG00000230082 PRRT3-AS1 - PRRT3 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_28553 chr2 135413991 135414211 + 19.23903 NA intron (NM_030923, intron 2 of 7) L1PA2|LINE|L1 62470 NM_030923 81615 Hs.369471 NM_030923 HPRD:13178 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 13-PTNLD9-TUMOR_peak_31122 chr20 42794713 42795292 + 19.23903 NA intron (NM_020433, intron 1 of 5) intron (NM_020433, intron 1 of 5) 21216 NM_175913 57158 Hs.441737 NM_020433 HPRD:12006 JPH2 CMH17|JP-2|JP2 junctophilin 2 protein-coding 13-PTNLD9-TUMOR_peak_52338 chr8 142137469 142137667 + 19.23073 NA Intergenic Intergenic -1152 NM_014957 22898 Hs.18166 NM_014957 HPRD:11114 DENND3 - DENN/MADD domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_16024 chr14 65140484 65140877 + 19.22136 NA Intergenic Intergenic -30513 NM_015549 26030 Hs.509637 NM_015549 HPRD:17861 PLEKHG3 ARHGEF43|KIAA0599 pleckstrin homology domain containing, family G (with RhoGef domain) member 3 protein-coding 13-PTNLD9-TUMOR_peak_22527 chr18 8425398 8425730 + 19.22136 NA Intergenic Intergenic -58532 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 13-PTNLD9-TUMOR_peak_12601 chr12 43355284 43355528 + 19.22136 NA Intergenic Intergenic -315106 NR_110042 101927058 Hs.434238 NR_110042 ENSG00000257510 LOC101927058 - uncharacterized LOC101927058 ncRNA 13-PTNLD9-TUMOR_peak_42961 chr5 169949217 169949809 + 19.21530 NA intron (NM_014592, intron 1 of 7) MamRep605|Unknown|Unknown 18473 NM_001278340 30820 Hs.484111 NM_014592 HPRD:06879 KCNIP1 KCHIP1|VABP Kv channel interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_23128 chr18 46156458 46156603 + 19.21530 NA intron (NM_014772, intron 2 of 11) Tigger7|DNA|TcMar-Tigger -40441 NR_039897 100616366 NR_039897 MIR4743 - microRNA 4743 ncRNA 13-PTNLD9-TUMOR_peak_33845 chr3 13526661 13527008 + 19.21150 NA intron (NM_001136041, intron 3 of 9) intron (NM_001136041, intron 3 of 9) 4990 NM_001136041 79885 Hs.744132 NM_024827 HPRD:09146 HDAC11 HD11 histone deacetylase 11 protein-coding 13-PTNLD9-TUMOR_peak_5549 chr1 224090963 224091137 + 19.20687 NA Intergenic Intergenic -57376 NM_005426 7159 Hs.523968 NM_005426 HPRD:11803 TP53BP2 53BP2|ASPP2|BBP|P53BP2|PPP1R13A tumor protein p53 binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_48988 chr7 128403662 128403959 + 19.20171 NA intron (NM_001199673, intron 5 of 5) intron (NM_001199673, intron 5 of 5) 12034 NM_001708 611 Hs.656404 NM_001708 HPRD:01836 OPN1SW BCP|BOP|CBT opsin 1 (cone pigments), short-wave-sensitive protein-coding 13-PTNLD9-TUMOR_peak_51291 chr8 92316892 92317216 + 19.20026 NA intron (NM_052832, intron 4 of 18) intron (NM_052832, intron 4 of 18) 55538 NM_052832 115111 Hs.354013 NM_052832 HPRD:10533 SLC26A7 SUT2 solute carrier family 26 (anion exchanger), member 7 protein-coding 13-PTNLD9-TUMOR_peak_50869 chr8 48325766 48325973 + 19.20026 NA intron (NM_001080394, intron 7 of 19) MIR3|SINE|MIR 152399 NM_001080394 23514 Hs.381058 NM_001080394 ENSG00000164808 SPIDR KIAA0146 scaffolding protein involved in DNA repair protein-coding 13-PTNLD9-TUMOR_peak_17287 chr15 52018614 52018867 + 19.18936 NA intron (NM_001143917, intron 1 of 2) intron (NM_001143917, intron 1 of 2) 11580 NM_153374 256586 Hs.603629 NM_153374 HPRD:17531 LYSMD2 - LysM, putative peptidoglycan-binding, domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_2215 chr1 76461957 76462191 + 19.18936 NA Intergenic Intergenic -63958 NR_026546 127247 Hs.125423 NM_080868 HPRD:10671 ASB17 Asb-17 ankyrin repeat and SOCS box containing 17 protein-coding 13-PTNLD9-TUMOR_peak_41837 chr5 118747046 118747272 + 19.18634 NA Intergenic Intergenic -40979 NM_000414 3295 Hs.406861 NM_000414 HPRD:03514 HSD17B4 DBP|MFE-2|MPF-2|PRLTS1|SDR8C1 hydroxysteroid (17-beta) dehydrogenase 4 protein-coding 13-PTNLD9-TUMOR_peak_4535 chr1 178299453 178299617 + 19.17349 NA intron (NM_170692, intron 3 of 17) intron (NM_170692, intron 3 of 17) -11071 NM_004841 9462 Hs.496139 NM_004841 HPRD:05845 RASAL2 NGAP RAS protein activator like 2 protein-coding 13-PTNLD9-TUMOR_peak_51762 chr8 121085455 121085699 + 19.16817 NA Intergenic Intergenic -51770 NM_021110 7373 Hs.409662 NM_021110 HPRD:00379 COL14A1 UND collagen, type XIV, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_51411 chr8 101679877 101680077 + 19.16567 NA Intergenic Charlie20a|DNA|hAT-Charlie -18084 NM_152628 169166 Hs.567758 NM_152628 HPRD:17545 SNX31 - sorting nexin 31 protein-coding 13-PTNLD9-TUMOR_peak_8659 chr10 134232363 134232810 + 19.16567 NA Intergenic Intergenic 21884 NM_001098637 170394 Hs.527751 NM_138499 HPRD:11465 PWWP2B PWWP2|bA432J24.1|pp8607 PWWP domain containing 2B protein-coding 13-PTNLD9-TUMOR_peak_31635 chr20 55162636 55163097 + 19.16567 NA Intergenic Intergenic -41492 NM_003222 7022 Hs.473152 NM_003222 HPRD:03361 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma) protein-coding 13-PTNLD9-TUMOR_peak_35166 chr3 98730959 98731246 + 19.14368 NA Intergenic Intergenic -110569 NM_080927 131566 Hs.203691 NM_080927 HPRD:10567 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_40347 chr5 12934953 12935135 + 19.14368 NA Intergenic LTR18A|LTR|ERVL 360075 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 13-PTNLD9-TUMOR_peak_39511 chr4 143738696 143738873 + 19.14368 NA intron (NM_001101669, intron 1 of 25) intron (NM_001101669, intron 1 of 25) 28820 NM_003866 8821 Hs.531403 NM_003866 HPRD:06322 INPP4B - inositol polyphosphate-4-phosphatase, type II, 105kDa protein-coding 13-PTNLD9-TUMOR_peak_3333 chr1 145652361 145652607 + 19.13929 NA intron (NM_014455, intron 3 of 8) intron (NM_014455, intron 3 of 8) 41494 NM_014455 27246 Hs.523550 NM_014455 RNF115 BCA2|ZNF364 ring finger protein 115 protein-coding 13-PTNLD9-TUMOR_peak_5789 chr1 230443849 230444122 + 19.13929 NA Intergenic Intergenic 117689 NM_001258311 79605 Hs.520463 NM_024554 HPRD:10148 PGBD5 - piggyBac transposable element derived 5 protein-coding 13-PTNLD9-TUMOR_peak_28749 chr2 153191531 153191962 + 19.13398 NA promoter-TSS (NM_052905) promoter-TSS (NM_052905) -5 NM_052905 114793 Hs.654630 NM_052905 HPRD:13545 FMNL2 FHOD2 formin-like 2 protein-coding 13-PTNLD9-TUMOR_peak_30534 chr20 18565855 18566041 + 19.13244 NA Intergenic MER21C|LTR|ERVL -2608 NM_080820 92675 Hs.659442 NM_080820 ENSG00000125821 DTD1 C20orf88|DUE-B|DUEB|HARS2|bA379J5.3|bA555E18.1|pqn-68 D-tyrosyl-tRNA deacylase 1 protein-coding 13-PTNLD9-TUMOR_peak_10814 chr11 85780786 85781060 + 19.12954 NA promoter-TSS (NM_001206946) promoter-TSS (NM_001206946) 0 NM_001206947 8301 Hs.163893 NM_007166 HPRD:04320 PICALM CALM|CLTH|LAP phosphatidylinositol binding clathrin assembly protein protein-coding 13-PTNLD9-TUMOR_peak_25232 chr19 47747463 47747775 + 19.11955 NA Intergenic CpG -11596 NM_001127242 27113 Hs.467020 NM_014417 HPRD:16165 BBC3 JFY-1|JFY1|PUMA BCL2 binding component 3 protein-coding 13-PTNLD9-TUMOR_peak_56666 chrX 152700319 152700557 + 19.11034 NA Intergenic LTR38|LTR|ERV1 11507 NM_080701 11219 Hs.644635 NM_080699 HPRD:02299 TREX2 - three prime repair exonuclease 2 protein-coding 13-PTNLD9-TUMOR_peak_23342 chr18 57721020 57721223 + 19.11034 NA Intergenic Intergenic 153929 NM_021127 5366 Hs.96 NM_021127 HPRD:12002 PMAIP1 APR|NOXA phorbol-12-myristate-13-acetate-induced protein 1 protein-coding 13-PTNLD9-TUMOR_peak_43461 chr6 2714624 2714914 + 19.11034 NA intron (NM_001012418, intron 2 of 12) MER66C|LTR|ERV1 36385 NM_001012418 340156 Hs.127830 NM_001012418 HPRD:17355 MYLK4 SgK085 myosin light chain kinase family, member 4 protein-coding 13-PTNLD9-TUMOR_peak_50648 chr8 38316728 38316946 + 19.10818 NA intron (NM_015850, intron 1 of 17) intron (NM_015850, intron 1 of 17) 8526 NM_001174067 2260 Hs.264887 NM_015850 HPRD:00634 FGFR1 BFGFR|CD331|CEK|FGFBR|FGFR-1|FLG|FLT-2|FLT2|HBGFR|HH2|HRTFDS|KAL2|N-SAM|OGD|bFGF-R-1 fibroblast growth factor receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_40213 chr5 3324117 3324351 + 19.10818 NA Intergenic (TG)n|Simple_repeat|Simple_repeat 146285 NR_104617 102467074 Hs.575250 NR_104617 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 13-PTNLD9-TUMOR_peak_11297 chr11 115165708 115166165 + 19.10818 NA intron (NM_001301043, intron 1 of 11) intron (NM_001301043, intron 1 of 11) 209305 NM_014333 23705 Hs.370510 NM_014333 HPRD:05746 CADM1 BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 cell adhesion molecule 1 protein-coding 13-PTNLD9-TUMOR_peak_7235 chr10 47107527 47107906 + 19.09135 NA intron (NR_033957, intron 1 of 3) intron (NR_033957, intron 1 of 3) 20991 NM_001278795 100996758 Hs.524719 NM_001278795 LOC100996758 - neuropeptide Y receptor type 4-like protein-coding 13-PTNLD9-TUMOR_peak_49513 chr7 143875959 143876465 + 19.09135 NA Intergenic L1PA15-16|LINE|L1 -4336 NM_198495 100128553 Hs.645204 NM_198495 ENSG00000225932 CTAGE4 cTAGE-4 CTAGE family, member 4 protein-coding 13-PTNLD9-TUMOR_peak_16986 chr15 33534397 33534668 + 19.08576 NA intron (NR_046005, intron 6 of 8) intron (NR_046005, intron 6 of 8) 5224 NR_046005 100652857 Hs.439998 NR_046005 TMCO5B - transmembrane and coiled-coil domains 5B, pseudogene pseudo 13-PTNLD9-TUMOR_peak_31453 chr20 49279596 49279824 + 19.08181 NA intron (NM_001290268, intron 1 of 21) MER112|DNA|hAT-Charlie 17702 NR_111906 100506175 Hs.658270 NR_111906 LOC100506175 - uncharacterized LOC100506175 ncRNA 13-PTNLD9-TUMOR_peak_26711 chr2 43302260 43302561 + 19.08181 NA Intergenic Intergenic -35728 NR_110585 102723854 Hs.570165 NR_110585 LOC102723854 - uncharacterized LOC102723854 ncRNA 13-PTNLD9-TUMOR_peak_870 chr1 28853375 28853740 + 19.07894 NA intron (NM_001269, intron 1 of 9) intron (NM_001269, intron 1 of 9) 8812 NM_001048195 1104 Hs.469723 NM_001269 HPRD:01559 RCC1 CHC1|RCC1-I|SNHG3-RCC1 regulator of chromosome condensation 1 protein-coding 13-PTNLD9-TUMOR_peak_2329 chr1 85794723 85794995 + 19.07894 NA intron (NM_012137, intron 4 of 5) intron (NM_012137, intron 4 of 5) -52272 NM_003921 8915 Hs.193516 NM_003921 HPRD:04625 BCL10 CARMEN|CIPER|CLAP|c-E10|mE10 B-cell CLL/lymphoma 10 protein-coding 13-PTNLD9-TUMOR_peak_53760 chr9 84174733 84174907 + 19.07894 NA Intergenic Intergenic 128776 NM_005077 7088 Hs.197320 NM_005077 HPRD:02557 TLE1 ESG|ESG1|GRG1 transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_11679 chr11 130657297 130657558 + 19.07894 NA Intergenic Intergenic 74578 NR_125383 100507431 Hs.375101 NR_125383 LOC100507431 - uncharacterized LOC100507431 ncRNA 13-PTNLD9-TUMOR_peak_19800 chr16 77268606 77268821 + 19.07894 NA Intergenic MSTA|LTR|ERVL-MaLR 35364 NM_001129979 100130958 Hs.734779 NM_001129979 ENSG00000205078 SYCE1L MRP2 synaptonemal complex central element protein 1-like protein-coding 13-PTNLD9-TUMOR_peak_9753 chr11 48084269 48084521 + 19.07406 NA intron (NM_002843, intron 1 of 24) intron (NM_002843, intron 1 of 24) 82285 NM_002843 5795 Hs.318547 NM_002843 HPRD:02955 PTPRJ CD148|DEP1|HPTPeta|R-PTP-ETA|SCC1 protein tyrosine phosphatase, receptor type, J protein-coding 13-PTNLD9-TUMOR_peak_34004 chr3 17875395 17875615 + 19.07249 NA Intergenic Intergenic -93106 NM_014744 9779 Hs.475629 NM_014744 HPRD:10262 TBC1D5 - TBC1 domain family, member 5 protein-coding 13-PTNLD9-TUMOR_peak_503 chr1 16030133 16030357 + 19.07249 NA intron (NM_015164, intron 1 of 19) intron (NM_015164, intron 1 of 19) 19418 NM_015164 23207 Hs.646775 NM_015164 ENSG00000116786 PLEKHM2 SKIP pleckstrin homology domain containing, family M (with RUN domain) member 2 protein-coding 13-PTNLD9-TUMOR_peak_42896 chr5 167186404 167186785 + 19.05499 NA intron (NM_001122679, intron 2 of 28) intron (NM_001122679, intron 2 of 28) 472783 NR_109894 101927862 Hs.659376 NR_109894 ENSG00000253978 CTB-178M22.2 - uncharacterized LOC101927862 ncRNA 13-PTNLD9-TUMOR_peak_13766 chr12 109226691 109226959 + 19.05499 NA intron (NM_001161330, intron 2 of 13) intron (NM_001161330, intron 2 of 13) -5498 NM_001161331 54434 Hs.199763 NM_018984 HPRD:09486 SSH1 SSH1L slingshot protein phosphatase 1 protein-coding 13-PTNLD9-TUMOR_peak_43458 chr6 2632744 2632951 + 19.05499 NA intron (NM_152554, intron 2 of 2) intron (NM_152554, intron 2 of 2) 2451 NM_152554 154386 Hs.680574 NM_152554 C6orf195 bA145H9.2 chromosome 6 open reading frame 195 protein-coding 13-PTNLD9-TUMOR_peak_21359 chr17 46560844 46561441 + 19.05499 NA Intergenic Intergenic 38947 NR_110804 101927166 Hs.149244 NR_110804 LOC101927166 - uncharacterized LOC101927166 ncRNA 13-PTNLD9-TUMOR_peak_18690 chr16 19606782 19607151 + 19.05335 NA intron (NM_001300743, intron 8 of 27) intron (NM_001300743, intron 8 of 27) 40229 NM_001300743 57020 Hs.654964 NM_020314 HPRD:14455 C16orf62 - chromosome 16 open reading frame 62 protein-coding 13-PTNLD9-TUMOR_peak_8753 chr11 762747 763044 + 19.05335 NA intron (NM_006755, intron 4 of 7) intron (NM_006755, intron 4 of 7) 14592 NM_182612 347862 Hs.218362 NM_182612 HPRD:08172 PDDC1 - Parkinson disease 7 domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_12838 chr12 52834653 52835112 + 19.04771 NA Intergenic Intergenic -6772 NM_004693 9119 Hs.697046 NM_004693 HPRD:11057 KRT75 K6HF|KB18|PFB keratin 75 protein-coding 13-PTNLD9-TUMOR_peak_31277 chr20 46008630 46008892 + 19.04311 NA Intergenic L2a|LINE|L2 -23128 NM_183048 23613 Hs.446240 NM_012408 HPRD:10166 ZMYND8 PRKCBP1|PRO2893|RACK7 zinc finger, MYND-type containing 8 protein-coding 13-PTNLD9-TUMOR_peak_39052 chr4 109513319 109513559 + 19.04295 NA intron (NR_026968, intron 1 of 3) HAL1|LINE|L1 28174 NR_026968 285456 Hs.683863 NM_182591 HPRD:08228 RPL34-AS1 - RPL34 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_13187 chr12 66025360 66025788 + 19.04295 NA intron (NR_120432, intron 1 of 4) intron (NR_120432, intron 1 of 4) 10578 NR_120433 100507065 Hs.591038 NR_120431 ENSG00000250748 LOC100507065 - uncharacterized LOC100507065 ncRNA 13-PTNLD9-TUMOR_peak_22178 chr17 76657520 76657811 + 19.04295 NA Intergenic L2a|LINE|L2 -29526 NR_110849 101928710 Hs.464224 NR_110848 ENSG00000267123 LOC101928710 - uncharacterized LOC101928710 ncRNA 13-PTNLD9-TUMOR_peak_53843 chr9 88150957 88151268 + 19.04295 NA Intergenic Intergenic 205832 NM_001286715 23287 Hs.719980 NM_015239 HPRD:08442 AGTPBP1 CCP1|NNA1 ATP/GTP binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_13980 chr12 118137454 118137635 + 19.04295 NA intron (NM_173598, intron 4 of 19) Tigger3c|DNA|TcMar-Tigger 268484 NM_173598 283455 Hs.375836 NM_173598 HPRD:13952 KSR2 - kinase suppressor of ras 2 protein-coding 13-PTNLD9-TUMOR_peak_24662 chr19 32166116 32166578 + 19.04295 NA Intergenic Intergenic 83160 NM_001205273 100507527 Hs.432564 NM_001205273 THEG5 - testis highly expressed protein 5 protein-coding 13-PTNLD9-TUMOR_peak_4383 chr1 171343109 171343303 + 19.03005 NA Intergenic L1PA2|LINE|L1 35171 NR_002719 7151 Hs.661092 NR_002719 TOP1P1 - topoisomerase (DNA) I pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_30643 chr20 24765996 24766462 + 19.03005 NA Intergenic Intergenic -163637 NM_003650 8530 Hs.143212 NM_003650 HPRD:04458 CST7 CMAP cystatin F (leukocystatin) protein-coding 13-PTNLD9-TUMOR_peak_36783 chr3 174868626 174869090 + 19.03005 NA intron (NM_207015, intron 2 of 13) intron (NM_207015, intron 2 of 13) -35826 NR_046390 100862679 Hs.148810 NR_046390 ENSG00000230292 NAALADL2-AS3 - NAALADL2 antisense RNA 3 ncRNA 13-PTNLD9-TUMOR_peak_27965 chr2 109351665 109351805 + 19.03005 NA intron (NM_006267, intron 4 of 28) L2|LINE|L2 15798 NM_006267 5903 Hs.199561 NM_006267 HPRD:03111 RANBP2 ADANE|ANE1|IIAE3|NUP358|TRP1|TRP2 RAN binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_53684 chr9 78871019 78871348 + 19.01875 NA intron (NM_001190482, intron 24 of 36) intron (NM_001190482, intron 24 of 36) 138261 NM_018339 55312 Hs.37558 NM_018339 HPRD:17969 RFK RIFK riboflavin kinase protein-coding 13-PTNLD9-TUMOR_peak_14441 chr13 25076936 25077169 + 19.01875 NA intron (NM_006437, intron 2 of 33) intron (NM_006437, intron 2 of 33) 9896 NM_006437 143 Hs.744855 NM_006437 HPRD:09598 PARP4 ADPRTL1|ARTD4|PARP-4|PARPL|PH5P|VAULT3|VPARP|VWA5C|p193 poly (ADP-ribose) polymerase family, member 4 protein-coding 13-PTNLD9-TUMOR_peak_8806 chr11 2120899 2121168 + 19.01875 NA Intergenic Intergenic 34406 NR_030158 619552 NR_030158 MIR483 MIRN483|hsa-mir-483 microRNA 483 ncRNA 13-PTNLD9-TUMOR_peak_42845 chr5 159408776 159409067 + 19.01875 NA Intergenic MLT1G3|LTR|ERVL-MaLR -27186 NM_001282500 7265 Hs.519718 NM_003314 HPRD:11881 TTC1 TPR1 tetratricopeptide repeat domain 1 protein-coding 13-PTNLD9-TUMOR_peak_53814 chr9 86574066 86574312 + 19.01421 NA Intergenic AluJb|SINE|Alu -2526 NM_032307 84267 Hs.208914 NM_032307 HPRD:12969 C9orf64 - chromosome 9 open reading frame 64 protein-coding 13-PTNLD9-TUMOR_peak_51913 chr8 126556930 126557084 + 19.00702 NA Intergenic Intergenic 112556 NM_001282985 10221 Hs.444947 NM_025195 HPRD:09863 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 13-PTNLD9-TUMOR_peak_28615 chr2 139518385 139518654 + 19.00702 NA intron (NM_007226, intron 1 of 1) intron (NM_007226, intron 1 of 1) 19292 NM_007226 11249 Hs.435019 NM_007226 NXPH2 NPH2 neurexophilin 2 protein-coding 13-PTNLD9-TUMOR_peak_39607 chr4 150919093 150919373 + 19.00146 NA Intergenic Intergenic -80193 NM_001040260 166614 Hs.591683 NM_152619 HPRD:13122 DCLK2 CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2 doublecortin-like kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_29385 chr2 192242063 192242246 + 19.00146 NA intron (NM_001130158, intron 13 of 30) intron (NM_001130158, intron 13 of 30) 131900 NM_001161819 4430 Hs.439620 NM_012223 HPRD:08407 MYO1B myr1 myosin IB protein-coding 13-PTNLD9-TUMOR_peak_15072 chr13 107269981 107270212 + 19.00146 NA promoter-TSS (NR_051977) promoter-TSS (NR_051977) -62 NR_051977 283483 Hs.651365 NR_051977 ENSG00000272274 LINC00551 - long intergenic non-protein coding RNA 551 ncRNA 13-PTNLD9-TUMOR_peak_32763 chr22 19950592 19950826 + 18.99834 NA promoter-TSS (NR_039918) promoter-TSS (NR_039918) -567 NR_039918 100616414 NR_039918 MIR4761 - microRNA 4761 ncRNA 13-PTNLD9-TUMOR_peak_13890 chr12 112857147 112857424 + 18.98306 NA intron (NM_080601, intron 1 of 10) intron (NM_080601, intron 1 of 10) 749 NM_002834 5781 Hs.506852 NM_002834 HPRD:01470 PTPN11 BPTP3|CFC|NS1|PTP-1D|PTP2C|SH-PTP2|SH-PTP3|SHP2 protein tyrosine phosphatase, non-receptor type 11 protein-coding 13-PTNLD9-TUMOR_peak_26066 chr2 9843243 9844099 + 18.98306 NA Intergenic Intergenic -72487 NM_006826 10971 Hs.74405 NM_006826 HPRD:00886 YWHAQ 14-3-3|1C5|HS1 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta protein-coding 13-PTNLD9-TUMOR_peak_24264 chr19 16217003 16217243 + 18.97835 NA Intergenic Intergenic -5367 NM_005370 4218 Hs.642874 NM_005370 RAB8A MEL|RAB8 RAB8A, member RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_54808 chr9 130324133 130324482 + 18.97835 NA intron (NM_001035534, intron 1 of 13) intron (NM_001035534, intron 1 of 13) 7089 NM_022833 64855 Hs.522401 NM_022833 HPRD:10804 FAM129B C9orf88|MEG-3|MINERVA|OC58|bA356B19.6 family with sequence similarity 129, member B protein-coding 13-PTNLD9-TUMOR_peak_27957 chr2 109278725 109278903 + 18.97835 NA intron (NM_001193482, intron 2 of 9) intron (NM_001193482, intron 2 of 9) 7546 NM_001193485 3987 Hs.597715 NM_004987 HPRD:03978 LIMS1 PINCH|PINCH-1|PINCH1 LIM and senescent cell antigen-like domains 1 protein-coding 13-PTNLD9-TUMOR_peak_37739 chr4 5367438 5367735 + 18.97813 NA intron (NM_018401, intron 4 of 11) intron (NM_018401, intron 4 of 11) -159297 NM_005750 10141 Hs.177972 NM_005750 HPRD:12826 C4orf6 aC1 chromosome 4 open reading frame 6 protein-coding 13-PTNLD9-TUMOR_peak_11616 chr11 129165638 129165973 + 18.97813 NA Intergenic Intergenic -80076 NM_003658 8538 Hs.591944 NM_003658 HPRD:16074 BARX2 - BARX homeobox 2 protein-coding 13-PTNLD9-TUMOR_peak_44804 chr6 36318501 36318836 + 18.97813 NA Intergenic LTR67B|LTR|ERVL -14006 NM_001010903 389384 Hs.162104 NM_001010903 HPRD:16824 C6orf222 - chromosome 6 open reading frame 222 protein-coding 13-PTNLD9-TUMOR_peak_5621 chr1 225960100 225960314 + 18.97813 NA Intergenic Intergenic -5308 NM_003133 6726 Hs.511425 NM_003133 HPRD:02830 SRP9 ALURBP signal recognition particle 9kDa protein-coding 13-PTNLD9-TUMOR_peak_41486 chr5 88856610 88856887 + 18.97813 NA Intergenic Intergenic 455789 NR_037433 100500825 NR_037433 miRBase:MI0016061 MIR3660 - microRNA 3660 ncRNA 13-PTNLD9-TUMOR_peak_6313 chr10 3572734 3573024 + 18.97813 NA Intergenic Intergenic 254594 NM_001300 1316 Hs.4055 NM_001300 HPRD:03632 KLF6 BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9 Kruppel-like factor 6 protein-coding 13-PTNLD9-TUMOR_peak_23398 chr18 61637196 61637500 + 18.96759 NA promoter-TSS (NM_001276490) promoter-TSS (NM_001276490) 85 NM_198833 5271 Hs.368077 NM_002640 HPRD:03412 SERPINB8 CAP2|PI8 serpin peptidase inhibitor, clade B (ovalbumin), member 8 protein-coding 13-PTNLD9-TUMOR_peak_6231 chr10 384219 384741 + 18.95895 NA intron (NM_014974, intron 29 of 36) Tigger3b|DNA|TcMar-Tigger 158546 NM_001202468 10771 Hs.292265 NM_006624 HPRD:09830 ZMYND11 BRAM1|BS69 zinc finger, MYND-type containing 11 protein-coding 13-PTNLD9-TUMOR_peak_4334 chr1 168356548 168356764 + 18.95895 NA Intergenic Intergenic 11894 NR_030284 693142 NR_030284 miRBase:MI0003563 MIR557 MIRN557|hsa-mir-557 microRNA 557 ncRNA 13-PTNLD9-TUMOR_peak_41212 chr5 71228558 71229044 + 18.95895 NA Intergenic Intergenic -174317 NM_005909 4131 Hs.335079 NM_005909 HPRD:01139 MAP1B FUTSCH|MAP5|PPP1R102 microtubule-associated protein 1B protein-coding 13-PTNLD9-TUMOR_peak_22013 chr17 73681054 73681367 + 18.95823 NA intron (NM_013260, intron 3 of 10) intron (NM_013260, intron 3 of 10) 17811 NM_013260 29115 Hs.655088 NM_013260 HPRD:17094 SAP30BP HCNGP|HTRG|HTRP SAP30 binding protein protein-coding 13-PTNLD9-TUMOR_peak_22086 chr17 74768987 74769153 + 18.95552 NA intron (NM_001242536, intron 9 of 11) L1MEc|LINE|L1 -26056 NR_110837 101928514 Hs.617206 NR_110837 LOC101928514 - uncharacterized LOC101928514 ncRNA 13-PTNLD9-TUMOR_peak_15073 chr13 107301897 107302218 + 18.95552 NA Intergenic Intergenic -4171 NR_047026 100874173 Hs.569297 NR_047026 ENSG00000230156 LINC00443 - long intergenic non-protein coding RNA 443 ncRNA 13-PTNLD9-TUMOR_peak_22067 chr17 74511406 74511813 + 18.94288 NA Intergenic Intergenic -12059 NR_033357 768206 Hs.634380 NM_001077620 PRCD RP36 progressive rod-cone degeneration protein-coding 13-PTNLD9-TUMOR_peak_26484 chr2 30440658 30441168 + 18.94288 NA Intergenic Intergenic -13484 NM_030915 81606 Hs.567598 NM_030915 HPRD:13965 LBH - limb bud and heart development protein-coding 13-PTNLD9-TUMOR_peak_26406 chr2 27850884 27851191 + 18.94288 NA promoter-TSS (NM_001145049) promoter-TSS (NM_001145049) -478 NM_001145047 11321 Hs.18259 NM_007266 HPRD:10308 GPN1 ATPBD1A|MBDIN|NTPBP|RPAP4|XAB1 GPN-loop GTPase 1 protein-coding 13-PTNLD9-TUMOR_peak_49067 chr7 130005864 130006234 + 18.93911 NA intron (NM_001127441, intron 11 of 13) intron (NM_001127441, intron 11 of 13) -14241 NM_001868 1357 Hs.2879 NM_001868 HPRD:00269 CPA1 CPA carboxypeptidase A1 (pancreatic) protein-coding 13-PTNLD9-TUMOR_peak_28911 chr2 162017199 162017619 + 18.93837 NA intron (NM_001199135, intron 1 of 7) intron (NM_001199135, intron 1 of 7) 470 NM_001199135 10010 Hs.132257 NM_004180 HPRD:04870 TANK I-TRAF|ITRAF|TRAF2 TRAF family member-associated NFKB activator protein-coding 13-PTNLD9-TUMOR_peak_1950 chr1 59323938 59324333 + 18.93837 NA intron (NR_108106, intron 1 of 1) intron (NR_108106, intron 1 of 1) 73312 NR_034015 100131060 Hs.680604 NR_034014 ENSG00000234807 LINC01135 - long intergenic non-protein coding RNA 1135 ncRNA 13-PTNLD9-TUMOR_peak_11629 chr11 129573117 129573307 + 18.93837 NA Intergenic MIRc|SINE|MIR -86048 NR_120582 101929557 Hs.385785 NR_120582 LINC01395 - long intergenic non-protein coding RNA 1395 ncRNA 13-PTNLD9-TUMOR_peak_49128 chr7 131314360 131314553 + 18.93438 NA Intergenic Intergenic -73080 NM_001018111 5420 Hs.744213 NM_005397 HPRD:04025 PODXL Gp200|PC|PCLP|PCLP-1 podocalyxin-like protein-coding 13-PTNLD9-TUMOR_peak_31820 chr20 62354634 62354788 + 18.93137 NA intron (NM_032527, intron 2 of 6) intron (NM_032527, intron 2 of 6) -13267 NM_017806 54923 Hs.233220 NM_017806 HPRD:07904 LIME1 LIME|LP8067|dJ583P15.4 Lck interacting transmembrane adaptor 1 protein-coding 13-PTNLD9-TUMOR_peak_5443 chr1 221195792 221195955 + 18.93137 NA Intergenic Intergenic -142391 NR_046901 100873924 Hs.645593 NR_046901 HLX-AS1 - HLX antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_197 chr1 6382362 6382501 + 18.93137 NA intron (NM_181866, intron 5 of 8) intron (NM_181866, intron 5 of 8) 36573 NM_181866 11332 Hs.126137 NM_007274 HPRD:12517 ACOT7 ACH1|ACT|BACH|CTE-II|LACH|LACH1|hBACH acyl-CoA thioesterase 7 protein-coding 13-PTNLD9-TUMOR_peak_29502 chr2 201238940 201239084 + 18.93137 NA intron (NM_001282743, intron 2 of 11) intron (NM_001282743, intron 2 of 11) 65339 NM_001282744 26010 Hs.120323 NM_015535 HPRD:10916 SPATS2L DNAPTP6|SGNP spermatogenesis associated, serine-rich 2-like protein-coding 13-PTNLD9-TUMOR_peak_20734 chr17 25816124 25816308 + 18.93137 NA intron (NM_014238, intron 2 of 20) intron (NM_014238, intron 2 of 20) 17180 NM_014238 8844 Hs.133534 NM_014238 KSR1 KSR|RSU2 kinase suppressor of ras 1 protein-coding 13-PTNLD9-TUMOR_peak_34877 chr3 66644456 66644685 + 18.93137 NA Intergenic L1ME2z|LINE|L1 -93725 NM_015541 26018 Hs.518055 NM_015541 HPRD:10057 LRIG1 LIG-1|LIG1 leucine-rich repeats and immunoglobulin-like domains 1 protein-coding 13-PTNLD9-TUMOR_peak_44034 chr6 19551854 19552160 + 18.93137 NA Intergenic Intergenic -285594 NM_001546 3400 Hs.519601 NM_001546 ID4 IDB4|bHLHb27 inhibitor of DNA binding 4, dominant negative helix-loop-helix protein protein-coding 13-PTNLD9-TUMOR_peak_19287 chr16 49544608 49544789 + 18.93137 NA intron (NM_015069, intron 7 of 7) intron (NM_015069, intron 7 of 7) 136890 NM_144602 123970 Hs.125875 NM_144602 HPRD:14560 C16orf78 - chromosome 16 open reading frame 78 protein-coding 13-PTNLD9-TUMOR_peak_6124 chr1 244763318 244763512 + 18.93137 NA intron (NM_001242340, intron 14 of 18) intron (NM_001242340, intron 14 of 18) -52935 NM_001297746 51029 Hs.498317 NM_016076 HPRD:15153 DESI2 C1orf121|DESI|DESI1|DeSI-2|FAM152A|PNAS-4|PPPDE1 desumoylating isopeptidase 2 protein-coding 13-PTNLD9-TUMOR_peak_292 chr1 8686599 8686772 + 18.93137 NA intron (NM_012102, intron 3 of 23) LTR19A|LTR|ERV1 191014 NM_012102 473 Hs.463041 NM_012102 HPRD:05566 RERE ARG|ARP|ATN1L|DNB1 arginine-glutamic acid dipeptide (RE) repeats protein-coding 13-PTNLD9-TUMOR_peak_28160 chr2 114469509 114469665 + 18.93137 NA TTS (NR_104470) TTS (NR_104470) 9358 NR_039943 100616208 NR_039943 MIR4782 - microRNA 4782 ncRNA 13-PTNLD9-TUMOR_peak_1405 chr1 42631444 42631744 + 18.92776 NA Intergenic Intergenic -1199 NM_033553 2980 Hs.778 NM_033553 HPRD:00767 GUCA2A GCAP-I|GUCA2|STARA guanylate cyclase activator 2A (guanylin) protein-coding 13-PTNLD9-TUMOR_peak_19838 chr16 79468770 79469008 + 18.91584 NA Intergenic Intergenic 165733 NM_005360 4094 Hs.134859 NM_005360 HPRD:01518 MAF CCA4|c-MAF v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog protein-coding 13-PTNLD9-TUMOR_peak_53952 chr9 92788234 92788465 + 18.91404 NA non-coding (NR_038882, exon 3 of 4) non-coding (NR_038882, exon 3 of 4) -2532 NR_036253 100422963 NR_036253 miRBase:MI0015899 MIR4290 - microRNA 4290 ncRNA 13-PTNLD9-TUMOR_peak_25946 chr2 1629062 1629403 + 18.91149 NA Intergenic Intergenic 119087 NM_012293 7837 Hs.332197 NM_012293 ENSG00000130508 PXDN COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO peroxidasin homolog (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_27110 chr2 65804210 65804419 + 18.90038 NA Intergenic Intergenic -144658 NM_181784 200734 Hs.59332 NM_181784 HPRD:18100 SPRED2 Spred-2 sprouty-related, EVH1 domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_30617 chr20 23603546 23603746 + 18.90038 NA Intergenic Intergenic 15039 NM_000099 1471 Hs.304682 NM_000099 HPRD:05056 CST3 ARMD11 cystatin C protein-coding 13-PTNLD9-TUMOR_peak_23695 chr19 3450922 3451335 + 18.90038 NA intron (NM_001245005, intron 7 of 9) L1MB7|LINE|L1 29412 NM_001136503 284422 Hs.130714 NM_001136503 ENSG00000095932 SMIM24 C19orf77 small integral membrane protein 24 protein-coding 13-PTNLD9-TUMOR_peak_43554 chr6 3813479 3813644 + 18.90038 NA Intergenic Intergenic -36071 NM_012135 26240 Hs.140944 NM_012135 HPRD:16883 FAM50B D6S2654E|X5L family with sequence similarity 50, member B protein-coding 13-PTNLD9-TUMOR_peak_19770 chr16 75279138 75279646 + 18.89383 NA intron (NM_001170715, intron 1 of 6) intron (NM_001170715, intron 1 of 6) 2832 NM_001170719 9564 Hs.479747 NM_014567 HPRD:04248 BCAR1 CAS|CAS1|CASS1|CRKAS|P130Cas breast cancer anti-estrogen resistance 1 protein-coding 13-PTNLD9-TUMOR_peak_49391 chr7 140372772 140373226 + 18.88898 NA promoter-TSS (NM_052853) promoter-TSS (NM_052853) 46 NM_052853 90956 Hs.744886 NM_052853 HPRD:10631 ADCK2 AARF aarF domain containing kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_28125 chr2 113869483 113869834 + 18.88876 NA Intergenic Intergenic -5812 NM_173841 3557 Hs.81134 NM_000577 HPRD:00978 IL1RN DIRA|ICIL-1RA|IL-1RN|IL-1ra|IL-1ra3|IL1F3|IL1RA|IRAP|MVCD4 interleukin 1 receptor antagonist protein-coding 13-PTNLD9-TUMOR_peak_6896 chr10 33294595 33294859 + 18.88876 NA Intergenic Intergenic -47434 NM_002211 3688 Hs.643813 NM_002211 HPRD:00628 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) protein-coding 13-PTNLD9-TUMOR_peak_256 chr1 8064878 8065485 + 18.88876 NA Intergenic Intergenic 21212 NM_018948 54206 Hs.605445 NM_018948 HPRD:09218 ERRFI1 GENE-33|MIG-6|MIG6|RALT ERBB receptor feedback inhibitor 1 protein-coding 13-PTNLD9-TUMOR_peak_41312 chr5 74918510 74918737 + 18.87897 NA intron (NM_001276713, intron 3 of 13) intron (NM_001276713, intron 3 of 13) 11322 NM_001276713 728780 Hs.370455 NM_001271529 ENSG00000189045 ANKDD1B - ankyrin repeat and death domain containing 1B protein-coding 13-PTNLD9-TUMOR_peak_30251 chr20 837096 837412 + 18.87897 NA Intergenic Intergenic 12003 NM_031424 83541 Hs.574822 NM_031424 HPRD:12775 FAM110A C20orf55|F10|bA371L19.3 family with sequence similarity 110, member A protein-coding 13-PTNLD9-TUMOR_peak_16552 chr14 99502387 99502569 + 18.87897 NA Intergenic Intergenic 235572 NM_022898 64919 Hs.709690 NM_022898 HPRD:05950 BCL11B ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|RIT1|ZNF856B|hRIT1-alpha B-cell CLL/lymphoma 11B (zinc finger protein) protein-coding 13-PTNLD9-TUMOR_peak_48108 chr7 77516972 77517161 + 18.87897 NA intron (NM_001127359, intron 1 of 8) intron (NM_001127359, intron 1 of 8) 47619 NM_001127357 57157 Hs.203965 NM_020432 HPRD:15130 PHTF2 - putative homeodomain transcription factor 2 protein-coding 13-PTNLD9-TUMOR_peak_40870 chr5 54103286 54103637 + 18.87897 NA Intergenic Intergenic -63375 NR_104658 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 13-PTNLD9-TUMOR_peak_3729 chr1 153582884 153583098 + 18.87731 NA intron (NM_080388, intron 1 of 2) intron (NM_080388, intron 1 of 2) 2523 NM_080388 140576 Hs.515714 NM_080388 HPRD:11529 S100A16 DT1P1A7|S100F S100 calcium binding protein A16 protein-coding 13-PTNLD9-TUMOR_peak_3451 chr1 148604486 148605095 + 18.87150 NA intron (NR_104217, intron 2 of 17) intron (NR_104217, intron 2 of 17) 43943 NM_173638 284565 Hs.523572 NM_173638 HPRD:14710 NBPF15 AB14|AG3|NBPF16 neuroblastoma breakpoint family, member 15 protein-coding 13-PTNLD9-TUMOR_peak_29355 chr2 191334643 191334847 + 18.86385 NA intron (NM_017694, intron 4 of 7) intron (NM_017694, intron 4 of 7) 61664 NM_017694 54842 Hs.418581 NM_017694 HPRD:13369 MFSD6 MMR2|hMMR2 major facilitator superfamily domain containing 6 protein-coding 13-PTNLD9-TUMOR_peak_13624 chr12 104252840 104253235 + 18.86204 NA intron (NR_027249, intron 13 of 15) intron (NR_027249, intron 13 of 15) -18062 NM_001031701 51559 Hs.48428 NM_016575 HPRD:18241 NT5DC3 TU12B1-TY|TU12B1TY 5'-nucleotidase domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_4699 chr1 183203754 183204036 + 18.85025 NA intron (NM_018891, intron 15 of 21) intron (NM_018891, intron 15 of 21) 48721 NM_018891 3918 Hs.591484 NM_005562 HPRD:01031 LAMC2 B2T|BM600|CSF|EBR2|EBR2A|LAMB2T|LAMNB2 laminin, gamma 2 protein-coding 13-PTNLD9-TUMOR_peak_56635 chrX 151240808 151241107 + 18.85025 NA Intergenic Intergenic 45454 NM_021049 4104 Hs.18048 NM_021049 HPRD:02277 MAGEA5 CT1.5|MAGE5|MAGEA4 melanoma antigen family A, 5 protein-coding 13-PTNLD9-TUMOR_peak_12922 chr12 54582750 54582907 + 18.85025 NA promoter-TSS (NM_001243787) promoter-TSS (NM_001243787) -50 NR_045039 23583 Hs.632721 NM_014311 HPRD:06376 SMUG1 FDG|HMUDG|UNG3 single-strand-selective monofunctional uracil-DNA glycosylase 1 protein-coding 13-PTNLD9-TUMOR_peak_50903 chr8 49619509 49619714 + 18.85025 NA Intergenic Intergenic 28259 NM_024593 79645 Hs.23245 NM_024593 HPRD:08565 EFCAB1 - EF-hand calcium binding domain 1 protein-coding 13-PTNLD9-TUMOR_peak_46154 chr6 139728832 139729338 + 18.84169 NA Intergenic Plat_L3|LINE|CR1 -33298 NM_006079 10370 Hs.82071 NM_006079 HPRD:04245 CITED2 ASD8|MRG-1|MRG1|P35SRJ|VSD2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 protein-coding 13-PTNLD9-TUMOR_peak_1290 chr1 40447709 40447918 + 18.83399 NA Intergenic L3|LINE|CR1 27029 NM_032793 84879 Hs.655177 NM_032793 HPRD:07861 MFSD2A MFSD2|NLS1 major facilitator superfamily domain containing 2A protein-coding 13-PTNLD9-TUMOR_peak_33664 chr3 8893476 8893770 + 18.83399 NA Intergenic Intergenic -82323 NM_000916 5021 Hs.2820 NM_000916 HPRD:01328 OXTR OT-R oxytocin receptor protein-coding 13-PTNLD9-TUMOR_peak_14079 chr12 121571003 121571281 + 18.82616 NA intron (NR_033953, intron 1 of 10) intron (NR_033953, intron 1 of 10) 511 NR_033955 5027 Hs.729169 NM_002562 HPRD:03977 P2RX7 P2X7 purinergic receptor P2X, ligand-gated ion channel, 7 protein-coding 13-PTNLD9-TUMOR_peak_10677 chr11 76002597 76003116 + 18.82616 NA Intergenic L2b|LINE|L2 -85282 NM_004626 7481 Hs.108219 NM_004626 HPRD:04741 WNT11 HWNT11 wingless-type MMTV integration site family, member 11 protein-coding 13-PTNLD9-TUMOR_peak_11856 chr12 3507569 3507939 + 18.82616 NA intron (NM_001256536, intron 1 of 9) intron (NM_001256536, intron 1 of 9) 17239 NM_001256536 56341 Hs.504530 NM_019854 HPRD:11029 PRMT8 HRMT1L3|HRMT1L4 protein arginine methyltransferase 8 protein-coding 13-PTNLD9-TUMOR_peak_31694 chr20 56566448 56566916 + 18.82616 NA Intergenic Intergenic 96232 NR_039757 100616353 NR_039757 miRBase:MI0016899 MIR4532 - microRNA 4532 ncRNA 13-PTNLD9-TUMOR_peak_49115 chr7 131198326 131198541 + 18.81657 NA intron (NM_001018111, intron 1 of 8) intron (NM_001018111, intron 1 of 8) 42943 NM_005397 5420 Hs.744213 NM_005397 HPRD:04025 PODXL Gp200|PC|PCLP|PCLP-1 podocalyxin-like protein-coding 13-PTNLD9-TUMOR_peak_22629 chr18 12282465 12282746 + 18.81176 NA Intergenic MER21C|LTR|ERVL -25652 NM_032525 84617 Hs.193491 NM_032525 HPRD:11349 TUBB6 HsT1601|TUBB-5 tubulin, beta 6 class V protein-coding 13-PTNLD9-TUMOR_peak_50498 chr8 29369183 29369459 + 18.80301 NA Intergenic Intergenic -161054 NM_001394 1846 Hs.417962 NM_001394 HPRD:04123 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 13-PTNLD9-TUMOR_peak_54930 chr9 133568975 133569206 + 18.79247 NA promoter-TSS (NM_014285) promoter-TSS (NM_014285) -57 NR_104230 23404 Hs.654643 NM_014285 HPRD:03758 EXOSC2 RRP4|Rrp4p|hRrp4p|p7 exosome component 2 protein-coding 13-PTNLD9-TUMOR_peak_16948 chr15 31757654 31757872 + 18.79247 NA Intergenic Intergenic 138680 NM_015995 51621 Hs.525752 NM_015995 HPRD:05620 KLF13 BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1 Kruppel-like factor 13 protein-coding 13-PTNLD9-TUMOR_peak_34836 chr3 64090368 64090595 + 18.79247 NA intron (NR_046701, intron 2 of 3) intron (NR_046701, intron 2 of 3) 1335 NR_046701 100874242 Hs.668874 NR_046701 PRICKLE2-AS2 - PRICKLE2 antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_50858 chr8 48053012 48053253 + 18.79247 NA Intergenic MER89-int|LTR|ERV1 -47798 NR_037168 100287846 Hs.21550 NR_037168 LOC100287846 - patched 1 pseudogene pseudo 13-PTNLD9-TUMOR_peak_44486 chr6 30811881 30812102 + 18.78792 NA Intergenic Intergenic -38399 NM_001297652 780 Hs.631988 NM_001954 HPRD:02678 DDR1 CAK|CD167|DDR|EDDR1|HGK2|MCK10|NEP|NTRK4|PTK3|PTK3A|RTK6|TRKE discoidin domain receptor tyrosine kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_50716 chr8 41675205 41675469 + 18.78679 NA intron (NM_001142446, intron 1 of 42) MER34-int|LTR|ERV1 -20197 NM_020476 286 Hs.654438 NM_000037 HPRD:01693 ANK1 ANK|SPH1|SPH2 ankyrin 1, erythrocytic protein-coding 13-PTNLD9-TUMOR_peak_6557 chr10 15242605 15242998 + 18.78319 NA Intergenic Intergenic -32106 NM_004808 9397 Hs.60339 NM_004808 NMT2 - N-myristoyltransferase 2 protein-coding 13-PTNLD9-TUMOR_peak_4295 chr1 167090761 167091074 + 18.78319 NA intron (NM_001080426, intron 4 of 4) CpG 26830 NM_001080426 92235 Hs.632462 NM_001080426 ENSG00000198842 DUSP27 - dual specificity phosphatase 27 (putative) protein-coding 13-PTNLD9-TUMOR_peak_45131 chr6 44032313 44032502 + 18.78319 NA Intergenic Intergenic 62784 NM_032111 64928 Hs.311190 NM_032111 HPRD:14741 MRPL14 L14mt|L32mt|MRP-L14|MRP-L32|MRPL32|RMPL32|RPML32 mitochondrial ribosomal protein L14 protein-coding 13-PTNLD9-TUMOR_peak_6534 chr10 14116470 14116838 + 18.78319 NA non-coding (NR_120638, exon 1 of 3) non-coding (NR_120638, exon 1 of 3) 371 NR_120638 101928453 Hs.650212 NR_120638 LOC101928453 - uncharacterized LOC101928453 ncRNA 13-PTNLD9-TUMOR_peak_47786 chr7 68156699 68157239 + 18.78319 NA Intergenic MamRep605|Unknown|Unknown 671729 NR_120514 102723427 Hs.583491 NR_120514 LOC102723427 - uncharacterized LOC102723427 ncRNA 13-PTNLD9-TUMOR_peak_28754 chr2 153278128 153278506 + 18.78000 NA intron (NM_052905, intron 1 of 25) intron (NM_052905, intron 1 of 25) 86566 NM_052905 114793 Hs.654630 NM_052905 HPRD:13545 FMNL2 FHOD2 formin-like 2 protein-coding 13-PTNLD9-TUMOR_peak_12205 chr12 13349363 13349819 + 18.77585 NA promoter-TSS (NM_001423) promoter-TSS (NM_001423) -11 NM_001423 2012 Hs.719042 NM_001423 HPRD:11892 EMP1 CL-20|EMP-1|TMP epithelial membrane protein 1 protein-coding 13-PTNLD9-TUMOR_peak_53210 chr9 38047879 38048100 + 18.77585 NA intron (NM_003028, intron 1 of 5) intron (NM_003028, intron 1 of 5) 21221 NM_003028 6461 Hs.521482 NM_003028 SHB bA3J10.2 Src homology 2 domain containing adaptor protein B protein-coding 13-PTNLD9-TUMOR_peak_11035 chr11 100699054 100699307 + 18.77585 NA intron (NM_152432, intron 3 of 23) intron (NM_152432, intron 3 of 23) 140773 NM_152432 143872 Hs.741465 NM_152432 ENSG00000165895 ARHGAP42 GRAF3 Rho GTPase activating protein 42 protein-coding 13-PTNLD9-TUMOR_peak_7652 chr10 72433460 72433722 + 18.77260 NA intron (NM_080722, intron 1 of 21) intron (NM_080722, intron 1 of 21) 1032 NM_080722 140766 Hs.352156 NM_080722 HPRD:06329 ADAMTS14 - ADAM metallopeptidase with thrombospondin type 1 motif, 14 protein-coding 13-PTNLD9-TUMOR_peak_45289 chr6 52460068 52460509 + 18.77260 NA Intergenic Intergenic 18192 NR_103447 401264 Hs.544586 NR_103446 ENSG00000225791 TRAM2-AS1 - TRAM2 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_47920 chr7 73519171 73519431 + 18.76963 NA intron (NM_002314, intron 5 of 15) AluSx1|SINE|Alu 11815 NM_001204426 3984 Hs.647035 NM_002314 HPRD:03210 LIMK1 LIMK|LIMK-1 LIM domain kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_52160 chr8 134224501 134224802 + 18.76963 NA intron (NM_001204870, intron 1 of 1) intron (NM_001204870, intron 1 of 1) 21369 NM_001204869 8840 Hs.492974 NM_003882 WISP1 CCN4|WISP1c|WISP1i|WISP1tc WNT1 inducible signaling pathway protein 1 protein-coding 13-PTNLD9-TUMOR_peak_35664 chr3 124835596 124835790 + 18.76963 NA intron (NM_024628, intron 8 of 13) intron (NM_024628, intron 8 of 13) 34703 NR_049815 100847039 NR_049815 MIR5092 - microRNA 5092 ncRNA 13-PTNLD9-TUMOR_peak_53135 chr9 35906022 35906238 + 18.76963 NA promoter-TSS (NM_001039792) promoter-TSS (NM_001039792) -59 NM_001039792 646962 Hs.208081 NM_001039792 ENSG00000196196 HRCT1 LGLL338|PRO537|UNQ338 histidine rich carboxyl terminus 1 protein-coding 13-PTNLD9-TUMOR_peak_10067 chr11 62328057 62328392 + 18.76963 NA promoter-TSS (NR_037427) promoter-TSS (NR_037427) -446 NR_037427 100500804 NR_037427 MIR3654 - microRNA 3654 ncRNA 13-PTNLD9-TUMOR_peak_49275 chr7 137366993 137367203 + 18.76110 NA intron (NM_004717, intron 2 of 33) intron (NM_004717, intron 2 of 33) 164511 NM_004717 9162 Hs.242947 NM_004717 HPRD:07238 DGKI DGK-IOTA diacylglycerol kinase, iota protein-coding 13-PTNLD9-TUMOR_peak_13719 chr12 107738176 107738518 + 18.76070 NA intron (NM_001018072, intron 1 of 16) intron (NM_001018072, intron 1 of 16) 26150 NM_001018072 121551 Hs.271272 NM_152322 HPRD:12536 BTBD11 ABTB2B BTB (POZ) domain containing 11 protein-coding 13-PTNLD9-TUMOR_peak_12125 chr12 10874436 10874893 + 18.76070 NA intron (NM_003651, intron 1 of 9) intron (NM_003651, intron 1 of 9) 1289 NM_001145426 8531 Hs.221889 NM_003651 HPRD:10347 YBX3 CSDA|CSDA1|DBPA|ZONAB Y box binding protein 3 protein-coding 13-PTNLD9-TUMOR_peak_49062 chr7 129930758 129930894 + 18.74841 NA Intergenic AluJr|SINE|Alu -2148 NM_001163446 51200 Hs.93764 NM_016352 HPRD:07405 CPA4 CPA3 carboxypeptidase A4 protein-coding 13-PTNLD9-TUMOR_peak_28795 chr2 157038703 157038988 + 18.72673 NA intron (NR_110250, intron 1 of 3) intron (NR_110250, intron 1 of 3) 72598 NR_110249 101929378 Hs.171192 NR_110249 LOC101929378 - uncharacterized LOC101929378 ncRNA 13-PTNLD9-TUMOR_peak_44182 chr6 25770287 25770593 + 18.72673 NA exon (NM_005495, exon 4 of 12) exon (NM_005495, exon 4 of 12) 15513 NM_005495 10050 Hs.282931 NM_005495 HPRD:05022 SLC17A4 KAIA2138 solute carrier family 17, member 4 protein-coding 13-PTNLD9-TUMOR_peak_30145 chr2 239772950 239773279 + 18.72673 NA intron (NM_001271893, intron 1 of 1) intron (NM_001271893, intron 1 of 1) 16441 NM_001271893 117581 Hs.422585 NM_057179 HPRD:09616 TWIST2 DERMO1|FFDD3|SETLSS|bHLHa39 twist family bHLH transcription factor 2 protein-coding 13-PTNLD9-TUMOR_peak_4720 chr1 183726216 183726529 + 18.72673 NA intron (NM_001297670, intron 2 of 17) intron (NM_001297670, intron 2 of 17) -47843 NM_001297671 23179 Hs.497148 NM_015149 HPRD:12032 RGL1 RGL ral guanine nucleotide dissociation stimulator-like 1 protein-coding 13-PTNLD9-TUMOR_peak_36732 chr3 171821604 171821781 + 18.72673 NA intron (NM_001135095, intron 1 of 25) intron (NM_001135095, intron 1 of 25) 63348 NM_001135095 64778 Hs.744888 NM_022763 HPRD:10943 FNDC3B FAD104|PRO4979|YVTM2421 fibronectin type III domain containing 3B protein-coding 13-PTNLD9-TUMOR_peak_44352 chr6 28129435 28129630 + 18.72673 NA promoter-TSS (NR_103448) promoter-TSS (NR_103448) -7 NR_103448 651302 Hs.172143 NM_001145129 ENSG00000226314 ZNF192P1 ZNF389|ZNF389P|dJ265C24.4 zinc finger protein 192 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_37963 chr4 9926342 9926560 + 18.72513 NA intron (NM_001001290, intron 7 of 12) intron (NM_001001290, intron 7 of 12) 96663 NM_020041 56606 Hs.656895 NM_020041 HPRD:05848 SLC2A9 GLUT9|GLUTX|UAQTL2|URATv1 solute carrier family 2 (facilitated glucose transporter), member 9 protein-coding 13-PTNLD9-TUMOR_peak_43564 chr6 3919423 3919904 + 18.72493 NA Intergenic MER50|LTR|ERV1 70031 NM_012135 26240 Hs.140944 NM_012135 HPRD:16883 FAM50B D6S2654E|X5L family with sequence similarity 50, member B protein-coding 13-PTNLD9-TUMOR_peak_19700 chr16 70749057 70749409 + 18.72493 NA intron (NM_018052, intron 14 of 18) L2b|LINE|L2 -29279 NM_138383 92154 Hs.432387 NM_138383 HPRD:14289 MTSS1L ABBA-1 metastasis suppressor 1-like protein-coding 13-PTNLD9-TUMOR_peak_56631 chrX 151149701 151149879 + 18.72493 NA Intergenic L2a|LINE|L2 -6639 NM_004961 2564 Hs.22785 NM_004961 HPRD:02104 GABRE - gamma-aminobutyric acid (GABA) A receptor, epsilon protein-coding 13-PTNLD9-TUMOR_peak_48240 chr7 87936049 87936308 + 18.72493 NA promoter-TSS (NM_001205315) promoter-TSS (NM_001205315) 50 NM_024636 79689 Hs.521008 NM_024636 HPRD:11637 STEAP4 STAMP2|TIARP|TNFAIP9 STEAP family member 4 protein-coding 13-PTNLD9-TUMOR_peak_31597 chr20 52884018 52884231 + 18.72433 NA Intergenic Intergenic 59622 NM_002623 5203 Hs.91161 NM_002623 HPRD:05358 PFDN4 C1|PFD4 prefoldin subunit 4 protein-coding 13-PTNLD9-TUMOR_peak_30979 chr20 36738416 36738565 + 18.72433 NA Intergenic Intergenic 55210 NM_004613 7052 Hs.517033 NM_004613 HPRD:01825 TGM2 G-ALPHA-h|GNAH|HEL-S-45|TG2|TGC transglutaminase 2 protein-coding 13-PTNLD9-TUMOR_peak_19862 chr16 80982246 80982423 + 18.72433 NA Intergenic Intergenic -57769 NM_001270474 55839 Hs.726537 NM_018455 HPRD:12528 CENPN BM039|C16orf60|CENP-N|ICEN32 centromere protein N protein-coding 13-PTNLD9-TUMOR_peak_29941 chr2 227514973 227515167 + 18.72433 NA Intergenic Intergenic 8439 NR_049887 100847053 NR_049887 miRBase:MI0019309 MIR5702 - microRNA 5702 ncRNA 13-PTNLD9-TUMOR_peak_5509 chr1 223404019 223404170 + 18.72433 NA intron (NM_017982, intron 5 of 8) MIRb|SINE|MIR -87470 NM_003268 7100 Hs.604542 NM_003268 HPRD:04326 TLR5 MELIOS|SLE1|SLEB1|TIL3 toll-like receptor 5 protein-coding 13-PTNLD9-TUMOR_peak_50213 chr8 19864921 19865199 + 18.72433 NA Intergenic LTR32|LTR|ERVL 68478 NM_000237 4023 Hs.180878 NM_000237 HPRD:01999 LPL HDLCQ11|LIPD lipoprotein lipase protein-coding 13-PTNLD9-TUMOR_peak_10383 chr11 67668759 67668901 + 18.72433 NA Intergenic Intergenic -96023 NR_024249 645332 Hs.535094 NR_024249 ENSG00000160172 FAM86C2P - family with sequence similarity 86, member A pseudogene pseudo 13-PTNLD9-TUMOR_peak_52767 chr9 14238615 14238803 + 18.72433 NA intron (NM_005596, intron 2 of 8) intron (NM_005596, intron 2 of 8) -57908 NM_001282787 4781 Hs.644095 NM_005596 HPRD:09008 NFIB CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I/B protein-coding 13-PTNLD9-TUMOR_peak_3082 chr1 120284940 120285173 + 18.72312 NA intron (NM_006623, intron 10 of 11) intron (NM_006623, intron 10 of 11) 26499 NM_005518 3158 Hs.59889 NM_005518 HPRD:02580 HMGCS2 - 3-hydroxy-3-methylglutaryl-CoA synthase 2 (mitochondrial) protein-coding 13-PTNLD9-TUMOR_peak_43856 chr6 13480497 13480737 + 18.72312 NA intron (NM_001242629, intron 1 of 1) intron (NM_001242629, intron 1 of 1) 5798 NM_001242628 54438 Hs.484686 NM_018988 HPRD:13574 GFOD1 ADG-90|C6orf114 glucose-fructose oxidoreductase domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_49091 chr7 130645234 130645455 + 18.69507 NA intron (NR_109852, intron 4 of 5) intron (NR_109852, intron 4 of 5) 47121 NR_109780 100506860 Hs.635013 NR_109780 LOC100506860 - uncharacterized LOC100506860 ncRNA 13-PTNLD9-TUMOR_peak_53261 chr9 40873074 40873249 + 18.67225 NA Intergenic Intergenic -81049 NM_033160 26149 Hs.522147 NM_033160 HPRD:11342 ZNF658 - zinc finger protein 658 protein-coding 13-PTNLD9-TUMOR_peak_26588 chr2 37384099 37384267 + 18.67225 NA promoter-TSS (NM_002759) promoter-TSS (NM_002759) 7 NM_002759 5610 Hs.131431 NM_002759 HPRD:01468 EIF2AK2 EIF2AK1|PKR|PPP1R83|PRKR eukaryotic translation initiation factor 2-alpha kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_17427 chr15 64238046 64238365 + 18.66750 NA intron (NM_014326, intron 4 of 11) intron (NM_014326, intron 4 of 11) 17732 NR_120344 101928988 Hs.673214 NR_120344 ENSG00000259351 LOC101928988 - uncharacterized LOC101928988 ncRNA 13-PTNLD9-TUMOR_peak_5529 chr1 223894945 223895218 + 18.66325 NA intron (NM_001146068, intron 1 of 20) intron (NM_001146068, intron 1 of 20) -5038 NM_001748 824 Hs.350899 NM_001748 HPRD:00254 CAPN2 CANP2|CANPL2|CANPml|mCANP calpain 2, (m/II) large subunit protein-coding 13-PTNLD9-TUMOR_peak_6397 chr10 6317185 6317532 + 18.66187 NA Intergenic Intergenic -51149 NR_040079 399715 NR_040079 ENSG00000215244 LOC399715 - uncharacterized LOC399715 ncRNA 13-PTNLD9-TUMOR_peak_44108 chr6 23981279 23981483 + 18.66187 NA Intergenic Intergenic -145033 NM_080723 140767 Hs.726270 NM_080723 HPRD:18285 NRSN1 VMP|p24 neurensin 1 protein-coding 13-PTNLD9-TUMOR_peak_54144 chr9 100161372 100161630 + 18.66187 NA Intergenic Intergenic -2528 NR_026847 286359 Hs.132262 NM_182600 LOC286359 - uncharacterized LOC286359 ncRNA 13-PTNLD9-TUMOR_peak_51901 chr8 126375069 126375284 + 18.65638 NA intron (NM_173685, intron 7 of 7) intron (NM_173685, intron 7 of 7) -67387 NM_025195 10221 Hs.444947 NM_025195 HPRD:09863 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 13-PTNLD9-TUMOR_peak_22812 chr18 22312034 22312256 + 18.65638 NA Intergenic MER77B|LTR|ERVL 103999 NR_040033 729950 Hs.585850 NR_040033 ENSG00000265485 LOC729950 - uncharacterized LOC729950 ncRNA 13-PTNLD9-TUMOR_peak_48763 chr7 106377067 106377226 + 18.65638 NA Intergenic L1M4c|LINE|L1 -75512 NM_175884 168455 Hs.29692 NM_175884 HPRD:08202 CCDC71L C7orf74 coiled-coil domain containing 71-like protein-coding 13-PTNLD9-TUMOR_peak_20511 chr17 15159134 15159300 + 18.65376 NA intron (NR_104018, intron 1 of 2) intron (NR_104018, intron 1 of 2) -4204 NR_039884 100616125 NR_039884 MIR4731 - microRNA 4731 ncRNA 13-PTNLD9-TUMOR_peak_32869 chr22 22191533 22191786 + 18.65376 NA intron (NM_002745, intron 1 of 8) intron (NM_002745, intron 1 of 8) 30311 NM_002745 5594 Hs.431850 NM_002745 HPRD:01496 MAPK1 ERK|ERK-2|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK mitogen-activated protein kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_45212 chr6 46725069 46725270 + 18.65376 NA intron (NM_001162435, intron 4 of 4) intron (NM_001162435, intron 4 of 4) 10515 NM_001162435 100287718 Hs.736491 NM_001162435 ENSG00000230062 ANKRD66 - ankyrin repeat domain 66 protein-coding 13-PTNLD9-TUMOR_peak_14115 chr12 122249832 122250119 + 18.65376 NA intron (NM_015048, intron 5 of 16) CpG 7337 NM_015048 23067 Hs.507122 NM_015048 ENSG00000139718 SETD1B KMT2G|Set1B SET domain containing 1B protein-coding 13-PTNLD9-TUMOR_peak_49180 chr7 133975150 133975338 + 18.65376 NA 3' UTR (NM_032826, exon 10 of 10) 3' UTR (NM_032826, exon 10 of 10) 26583 NM_032826 84912 Hs.490181 NM_032826 HPRD:11578 SLC35B4 YEA|YEA4 solute carrier family 35 (UDP-xylose/UDP-N-acetylglucosamine transporter), member B4 protein-coding 13-PTNLD9-TUMOR_peak_20792 chr17 28037861 28038135 + 18.62573 NA intron (NM_001282130, intron 2 of 7) intron (NM_001282130, intron 2 of 7) 50452 NM_001282131 85464 Hs.654754 NM_033389 HPRD:09487 SSH2 SSH-2|SSH-2L slingshot protein phosphatase 2 protein-coding 13-PTNLD9-TUMOR_peak_18787 chr16 23516103 23516349 + 18.62573 NA intron (NM_015044, intron 1 of 16) intron (NM_015044, intron 1 of 16) 5589 NM_015044 23062 Hs.460336 NM_015044 HPRD:09347 GGA2 VEAR golgi-associated, gamma adaptin ear containing, ARF binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_54166 chr9 100639099 100639444 + 18.62477 NA Intergenic Intergenic 23734 NM_004473 2304 Hs.159234 NM_004473 HPRD:04014 FOXE1 FKHL15|FOXE2|HFKH4|HFKL5|TITF2|TTF-2|TTF2 forkhead box E1 (thyroid transcription factor 2) protein-coding 13-PTNLD9-TUMOR_peak_24686 chr19 33601170 33601512 + 18.61929 NA intron (NM_018025, intron 11 of 19) intron (NM_018025, intron 11 of 19) -21657 NM_173479 126248 Hs.211046 NM_173479 HPRD:14033 WDR88 PQWD WD repeat domain 88 protein-coding 13-PTNLD9-TUMOR_peak_35083 chr3 87276760 87276978 + 18.61929 NA intron (NM_001244644, intron 1 of 4) intron (NM_001244644, intron 1 of 4) 456 NM_001244644 25978 Hs.476930 NM_014043 HPRD:13174 CHMP2B ALS17|CHMP2.5|DMT1|VPS2-2|VPS2B charged multivesicular body protein 2B protein-coding 13-PTNLD9-TUMOR_peak_48968 chr7 127992293 127992494 + 18.61929 NA exon (NM_001174164, exon 6 of 6) exon (NM_001174164, exon 6 of 6) -8431 NM_018077 55131 Hs.274263 NM_018077 HPRD:07668 RBM28 - RNA binding motif protein 28 protein-coding 13-PTNLD9-TUMOR_peak_46761 chr7 4723675 4723897 + 18.61929 NA intron (NM_001037165, intron 1 of 8) intron (NM_001037165, intron 1 of 8) 1856 NM_001037165 221937 Hs.487393 NM_001037165 HPRD:18750 FOXK1 FOXK1L forkhead box K1 protein-coding 13-PTNLD9-TUMOR_peak_16122 chr14 69162073 69162432 + 18.61018 NA Intergenic Intergenic 98379 NM_004926 677 Hs.85155 NM_004926 HPRD:03041 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein-like 1 protein-coding 13-PTNLD9-TUMOR_peak_19396 chr16 56358253 56358651 + 18.61018 NA intron (NM_138736, intron 3 of 7) MIR3|SINE|MIR 79020 NR_037499 100500891 NR_037499 MIR3935 - microRNA 3935 ncRNA 13-PTNLD9-TUMOR_peak_36806 chr3 177075191 177075473 + 18.60286 NA Intergenic Intergenic 63102 NR_047465 100820709 Hs.518409 NR_047465 LINC00501 - long intergenic non-protein coding RNA 501 ncRNA 13-PTNLD9-TUMOR_peak_2143 chr1 68257320 68257685 + 18.59936 NA intron (NM_018841, intron 1 of 3) L2a|LINE|L2 -40469 NR_040077 100289178 Hs.677603 NR_040077 ENSG00000232284 GNG12-AS1 - GNG12 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_28279 chr2 121371372 121371565 + 18.59936 NA Intergenic Intergenic -147543 NR_027181 84931 Hs.334519 NM_032845 HPRD:08604 LINC01101 - long intergenic non-protein coding RNA 1101 ncRNA 13-PTNLD9-TUMOR_peak_4110 chr1 160812133 160812398 + 18.59936 NA intron (NM_001166664, intron 1 of 7) intron (NM_001166664, intron 1 of 7) 20427 NM_001166664 51744 Hs.157872 NM_016382 HPRD:16121 CD244 2B4|NAIL|NKR2B4|Nmrk|SLAMF4 CD244 molecule, natural killer cell receptor 2B4 protein-coding 13-PTNLD9-TUMOR_peak_43440 chr6 1917959 1918184 + 18.59936 NA intron (NM_001500, intron 7 of 10) intron (NM_001500, intron 7 of 10) 258154 NM_001253846 2762 Hs.144496 NM_001500 HPRD:11925 GMDS GMD|SDR3E1 GDP-mannose 4,6-dehydratase protein-coding 13-PTNLD9-TUMOR_peak_50554 chr8 31674621 31674877 + 18.59936 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) 177481 NM_013962 3084 Hs.453951 NM_004495 HPRD:00802 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 13-PTNLD9-TUMOR_peak_16995 chr15 33851328 33851695 + 18.58838 NA intron (NM_001243996, intron 10 of 102) intron (NM_001243996, intron 10 of 102) 248334 NM_001243996 6263 Hs.709373 NM_001036 HPRD:01620 RYR3 RYR-3 ryanodine receptor 3 protein-coding 13-PTNLD9-TUMOR_peak_42824 chr5 158878311 158878509 + 18.58838 NA intron (NR_027110, intron 6 of 6) Plat_L3|LINE|CR1 14874 NR_027110 285627 Hs.552766 NR_027110 ENSG00000253298 LOC285627 - uncharacterized LOC285627 ncRNA 13-PTNLD9-TUMOR_peak_51914 chr8 126557837 126558480 + 18.58299 NA Intergenic Intergenic 113707 NM_001282985 10221 Hs.444947 NM_025195 HPRD:09863 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 13-PTNLD9-TUMOR_peak_32276 chr21 38382177 38382404 + 18.57937 NA intron (NM_018962, intron 2 of 3) intron (NM_018962, intron 2 of 3) 3427 NM_018962 53820 Hs.254560 NM_018962 HPRD:10923 RIPPLY3 DSCR6 ripply transcriptional repressor 3 protein-coding 13-PTNLD9-TUMOR_peak_46798 chr7 5676745 5676912 + 18.57937 NA intron (NM_207111, intron 15 of 16) intron (NM_207111, intron 15 of 16) 43264 NR_046834 100874342 Hs.665728 NR_046834 RNF216-IT1 - RNF216 intronic transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_8036 chr10 95205318 95205671 + 18.57937 NA intron (NM_133337, intron 3 of 52) intron (NM_133337, intron 3 of 52) 36580 NM_133337 26509 Hs.602086 NM_013451 HPRD:06857 MYOF FER1L3 myoferlin protein-coding 13-PTNLD9-TUMOR_peak_23208 chr18 49417270 49417485 + 18.57937 NA Intergenic Intergenic -449165 NM_005215 1630 Hs.162025 NM_005215 DCC CRC18|CRCR1|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 13-PTNLD9-TUMOR_peak_5062 chr1 203121583 203121826 + 18.56789 NA intron (NM_001048230, intron 2 of 2) intron (NM_001048230, intron 2 of 2) 23238 NM_004997 4608 Hs.927 NM_004997 HPRD:01186 MYBPH - myosin binding protein H protein-coding 13-PTNLD9-TUMOR_peak_52163 chr8 134254153 134254344 + 18.56633 NA intron (NM_001258432, intron 13 of 13) intron (NM_001258432, intron 13 of 13) 50966 NM_001204869 8840 Hs.492974 NM_003882 WISP1 CCN4|WISP1c|WISP1i|WISP1tc WNT1 inducible signaling pathway protein 1 protein-coding 13-PTNLD9-TUMOR_peak_40413 chr5 16492600 16492809 + 18.56633 NA intron (NM_001034850, intron 3 of 8) intron (NM_001034850, intron 3 of 8) 16403 NM_019000 54463 Hs.481704 NM_019000 HPRD:07879 FAM134B JK-1|JK1 family with sequence similarity 134, member B protein-coding 13-PTNLD9-TUMOR_peak_7395 chr10 53993437 53993663 + 18.55296 NA intron (NM_006258, intron 9 of 17) L1PA2|LINE|L1 80338 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_36105 chr3 138542708 138542885 + 18.55296 NA Intergenic Intergenic -64595 NM_006219 5291 Hs.239818 NM_006219 PIK3CB P110BETA|PI3K|PI3KBETA|PIK3C1 phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit beta protein-coding 13-PTNLD9-TUMOR_peak_28528 chr2 134344630 134344987 + 18.55296 NA Intergenic MIR|SINE|MIR -18777 NM_207363 344148 Hs.537329 NM_207363 HPRD:16936 NCKAP5 ERIH1|ERIH2|NAP5 NCK-associated protein 5 protein-coding 13-PTNLD9-TUMOR_peak_54671 chr9 124360401 124360620 + 18.54190 NA intron (NM_032552, intron 1 of 16) CpG 31129 NM_032552 153090 Hs.522378 NM_032552 HPRD:09903 DAB2IP AF9Q34|AIP-1|AIP1|DIP1/2 DAB2 interacting protein protein-coding 13-PTNLD9-TUMOR_peak_52484 chr8 145060525 145060677 + 18.53838 NA promoter-TSS (NM_032789) promoter-TSS (NM_032789) 34 NM_032789 84875 Hs.348609 NM_032789 HPRD:15100 PARP10 ARTD10 poly (ADP-ribose) polymerase family, member 10 protein-coding 13-PTNLD9-TUMOR_peak_26409 chr2 27905168 27905458 + 18.53758 NA intron (NM_018158, intron 9 of 13) intron (NM_018158, intron 9 of 13) -18606 NM_001282731 9913 Hs.6232 NM_014860 HPRD:18115 SUPT7L SPT7L|STAF65|STAF65(gamma)|STAF65G|SUPT7H suppressor of Ty 7 (S. cerevisiae)-like protein-coding 13-PTNLD9-TUMOR_peak_37199 chr3 189873494 189873859 + 18.53758 NA Intergenic Intergenic -33450 NM_001134418 55214 Hs.374191 NM_018192 HPRD:17270 LEPREL1 MCVD|MLAT4|P3H2 leprecan-like 1 protein-coding 13-PTNLD9-TUMOR_peak_1704 chr1 48407644 48407849 + 18.53758 NA intron (NM_001194986, intron 2 of 6) intron (NM_001194986, intron 2 of 6) 54816 NM_001194986 388630 Hs.61504 NM_001194986 ENSG00000269113 TRABD2B TIKI2 TraB domain containing 2B protein-coding 13-PTNLD9-TUMOR_peak_42801 chr5 157809578 157809776 + 18.53758 NA intron (NR_109888, intron 1 of 6) MLT1H|LTR|ERVL-MaLR 27104 NR_109888 101927697 Hs.483960 NR_109888 LOC101927697 - uncharacterized LOC101927697 ncRNA 13-PTNLD9-TUMOR_peak_52225 chr8 135904736 135905145 + 18.53758 NA Intergenic L1MB7|LINE|L1 42762 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 13-PTNLD9-TUMOR_peak_4061 chr1 159870258 159870422 + 18.53692 NA promoter-TSS (NM_012337) promoter-TSS (NM_012337) -434 NM_012337 25790 Hs.647705 NM_012337 HPRD:05514 CFAP45 CCDC19|NESG1 cilia and flagella associated protein 45 protein-coding 13-PTNLD9-TUMOR_peak_53403 chr9 66521066 66521252 + 18.53650 NA intron (NR_122076, intron 4 of 5) intron (NR_122076, intron 4 of 5) 26890 NR_024496 442421 Hs.585349 NR_024496 PTGER4P2-CDK2AP2P2 PTGER4P2 PTGER4P2-CDK2AP2P2 readthrough transcribed pseudogene pseudo 13-PTNLD9-TUMOR_peak_36205 chr3 141204865 141205102 + 18.53509 NA promoter-TSS (NM_006506) promoter-TSS (NM_006506) -943 NM_006506 5922 Hs.98445 NM_006506 ENSG00000155903 RASA2 GAP1M RAS p21 protein activator 2 protein-coding 13-PTNLD9-TUMOR_peak_12284 chr12 20782603 20782767 + 18.53139 NA intron (NM_001244683, intron 4 of 14) intron (NM_001244683, intron 4 of 14) 57887 NM_001244683 5139 Hs.386791 NM_000921 HPRD:00441 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A phosphodiesterase 3A, cGMP-inhibited protein-coding 13-PTNLD9-TUMOR_peak_12326 chr12 25611258 25611476 + 18.53139 NA Intergenic L2c|LINE|L2 94850 NM_001145728 160492 Hs.44647 NM_152590 HPRD:08768 LMNTD1 IFLTD1|PAS1C1 lamin tail domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_42423 chr5 141851916 141852181 + 18.53139 NA Intergenic MIRb|SINE|MIR 141678 NM_033137 2246 Hs.483635 NM_000800 HPRD:00567 FGF1 AFGF|ECGF|ECGF-beta|ECGFA|ECGFB|FGF-1|FGF-alpha|FGFA|GLIO703|HBGF-1|HBGF1 fibroblast growth factor 1 (acidic) protein-coding 13-PTNLD9-TUMOR_peak_6699 chr10 24633327 24633535 + 18.53139 NA intron (NM_001282767, intron 2 of 18) intron (NM_001282767, intron 2 of 18) 68817 NR_030334 693188 NR_030334 MIR603 MIRN603|hsa-mir-603 microRNA 603 ncRNA 13-PTNLD9-TUMOR_peak_32458 chr21 44412618 44412796 + 18.53139 NA intron (NM_001286258, intron 1 of 9) MLT1G3|LTR|ERVL-MaLR 18087 NM_004571 5316 Hs.431043 NM_004571 HPRD:03653 PKNOX1 PREP1|pkonx1c PBX/knotted 1 homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_24654 chr19 31705133 31705363 + 18.53139 NA Intergenic Intergenic 134942 NM_020856 57616 Hs.278436 NM_020856 HPRD:18351 TSHZ3 TSH3|ZNF537 teashirt zinc finger homeobox 3 protein-coding 13-PTNLD9-TUMOR_peak_41273 chr5 73528268 73528423 + 18.53139 NA Intergenic Intergenic 75805 NR_105009 102503429 Hs.519391 NR_105009 LINC01335 - long intergenic non-protein coding RNA 1335 ncRNA 13-PTNLD9-TUMOR_peak_38065 chr4 19740718 19740911 + 18.53139 NA Intergenic Intergenic -514373 NM_001289135 9353 Hs.29802 NM_004787 HPRD:04776 SLIT2 SLIL3|Slit-2 slit homolog 2 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_54795 chr9 129867017 129867350 + 18.53139 NA intron (NM_012098, intron 2 of 4) intron (NM_012098, intron 2 of 4) 17861 NM_012098 23452 Hs.653262 NM_012098 HPRD:05415 ANGPTL2 ARP2|HARP angiopoietin-like 2 protein-coding 13-PTNLD9-TUMOR_peak_27865 chr2 102443820 102443949 + 18.53139 NA intron (NM_145686, intron 5 of 30) intron (NM_145686, intron 5 of 30) 129346 NM_145687 9448 Hs.701013 NM_004834 HPRD:05235 MAP4K4 FLH21957|HEL-S-31|HGK|MEKKK4|NIK mitogen-activated protein kinase kinase kinase kinase 4 protein-coding 13-PTNLD9-TUMOR_peak_52800 chr9 16203447 16203655 + 18.53139 NA TTS (NM_001271829) TTS (NM_001271829) 49554 NM_001271829 100129385 Hs.586441 NM_001271829 ENSG00000205549 C9orf92 Em:AL513424.1 chromosome 9 open reading frame 92 protein-coding 13-PTNLD9-TUMOR_peak_42025 chr5 131714313 131714545 + 18.53139 NA intron (NM_003060, intron 2 of 9) intron (NM_003060, intron 2 of 9) -8821 NR_110997 553103 Hs.570908 NR_037898 ENSG00000233006 LOC553103 - uncharacterized LOC553103 ncRNA 13-PTNLD9-TUMOR_peak_24611 chr19 29431830 29431974 + 18.53139 NA Intergenic Intergenic -24136 NR_027318 148145 Hs.112651 NR_027318 ENSG00000267339 LINC00906 - long intergenic non-protein coding RNA 906 ncRNA 13-PTNLD9-TUMOR_peak_15260 chr14 21429443 21429612 + 18.53139 NA Intergenic AluY|SINE|Alu 5897 NM_002934 6036 Hs.728 NM_002934 HPRD:00577 RNASE2 EDN|RAF3|RNS2 ribonuclease, RNase A family, 2 (liver, eosinophil-derived neurotoxin) protein-coding 13-PTNLD9-TUMOR_peak_26031 chr2 9211249 9211491 + 18.53139 NA Intergenic MLT1J|LTR|ERVL-MaLR -67494 NM_138799 129642 Hs.467634 NM_138799 MBOAT2 LPCAT4|OACT2 membrane bound O-acyltransferase domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_41556 chr5 95403803 95403999 + 18.53139 NA Intergenic Intergenic -10941 NR_030309 693168 NR_030309 miRBase:MI0003590 MIR583 MIRN583|hsa-mir-583 microRNA 583 ncRNA 13-PTNLD9-TUMOR_peak_8482 chr10 122864177 122864324 + 18.53139 NA Intergenic Intergenic -253559 NR_033850 283089 Hs.568750 NR_033850 ENSG00000227165 WDR11-AS1 - WDR11 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_12474 chr12 32687156 32687289 + 18.53139 NA intron (NM_139241, intron 1 of 16) intron (NM_139241, intron 1 of 16) 32181 NM_139241 121512 Hs.117835 NM_139241 HPRD:16891 FGD4 CMT4H|FRABP|ZFYVE6 FYVE, RhoGEF and PH domain containing 4 protein-coding 13-PTNLD9-TUMOR_peak_38951 chr4 100644804 100644997 + 18.53139 NA Intergenic Intergenic -93081 NM_014395 27071 Hs.436271 NM_014395 HPRD:05773 DAPP1 BAM32 dual adaptor of phosphotyrosine and 3-phosphoinositides protein-coding 13-PTNLD9-TUMOR_peak_11427 chr11 120302876 120303059 + 18.53139 NA intron (NM_001301084, intron 11 of 40) intron (NM_001301084, intron 11 of 40) 46964 NM_001301084 23365 Hs.24598 NM_015313 HPRD:09207 ARHGEF12 LARG|PRO2792 Rho guanine nucleotide exchange factor (GEF) 12 protein-coding 13-PTNLD9-TUMOR_peak_8272 chr10 105668106 105668345 + 18.53139 NA intron (NM_024928, intron 3 of 9) intron (NM_024928, intron 3 of 9) 9820 NM_024928 79991 Hs.62314 NM_024928 OBFC1 AAF-44|AAF44|RPA-32|STN1|bA541N10.2 oligonucleotide/oligosaccharide-binding fold containing 1 protein-coding 13-PTNLD9-TUMOR_peak_45787 chr6 98406090 98406317 + 18.53139 NA Intergenic MER52A|LTR|ERV1 -66204 NR_031579 100302164 NR_031579 miRBase:MI0003939 MIR2113 hsa-mir-2113 microRNA 2113 ncRNA 13-PTNLD9-TUMOR_peak_41647 chr5 102760293 102760464 + 18.53139 NA Intergenic Intergenic 117308 NR_104670 102467212 Hs.641885 NR_104670 LOC102467212 - uncharacterized LOC102467212 ncRNA 13-PTNLD9-TUMOR_peak_12301 chr12 22508077 22508371 + 18.53139 NA Intergenic Intergenic -20576 NM_003034 6489 Hs.408614 NM_003034 HPRD:03078 ST8SIA1 GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_38160 chr4 30838883 30839150 + 18.53139 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 116979 NM_032457 5099 Hs.479439 NM_002589 HPRD:04288 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 13-PTNLD9-TUMOR_peak_16600 chr14 102438777 102439033 + 18.53139 NA intron (NM_001376, intron 1 of 77) intron (NM_001376, intron 1 of 77) 8040 NM_001376 1778 Hs.614080 NM_001376 HPRD:02524 DYNC1H1 DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22 dynein, cytoplasmic 1, heavy chain 1 protein-coding 13-PTNLD9-TUMOR_peak_33667 chr3 8978804 8979050 + 18.53139 NA intron (NM_020165, intron 6 of 12) intron (NM_020165, intron 6 of 12) 26232 NM_020165 56852 Hs.375684 NM_020165 HPRD:09242 RAD18 RNF73 RAD18 E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_946 chr1 32014619 32014796 + 18.53139 NA Intergenic Intergenic -27379 NM_001204414 64129 Hs.199368 NM_022164 HPRD:07122 TINAGL1 ARG1|LCN7|LIECG3|TINAGRP tubulointerstitial nephritis antigen-like 1 protein-coding 13-PTNLD9-TUMOR_peak_54683 chr9 124638987 124639177 + 18.53139 NA intron (NM_001139442, intron 6 of 8) MER5A|DNA|hAT-Charlie 134018 NM_138709 153090 Hs.522378 NM_032552 HPRD:09903 DAB2IP AF9Q34|AIP-1|AIP1|DIP1/2 DAB2 interacting protein protein-coding 13-PTNLD9-TUMOR_peak_19946 chr16 84721334 84721508 + 18.53139 NA Intergenic L2a|LINE|L2 -12134 NR_073577 9100 Hs.136778 NM_005153 HPRD:07029 USP10 UBPO ubiquitin specific peptidase 10 protein-coding 13-PTNLD9-TUMOR_peak_47784 chr7 67734495 67734696 + 18.53139 NA Intergenic Intergenic 249355 NR_120514 102723427 Hs.583491 NR_120514 LOC102723427 - uncharacterized LOC102723427 ncRNA 13-PTNLD9-TUMOR_peak_8322 chr10 112083396 112083569 + 18.53139 NA Intergenic Intergenic -18775 NM_005871 10285 Hs.632093 NM_005871 SMNDC1 SMNR|SPF30|TDRD16C survival motor neuron domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_13618 chr12 104020373 104020528 + 18.53139 NA intron (NM_017564, intron 5 of 68) intron (NM_017564, intron 5 of 68) 39381 NM_017564 55576 Hs.408249 NM_017564 HPRD:10542 STAB2 FEEL2|FELE-2|FELL2|FEX2|HARE stabilin 2 protein-coding 13-PTNLD9-TUMOR_peak_21714 chr17 60878071 60878315 + 18.53139 NA intron (NM_001100875, intron 2 of 10) intron (NM_001100875, intron 2 of 10) 5821 NM_001100875 162333 Hs.665663 NM_152598 HPRD:08762 MARCH10 MARCH-X|RNF190 membrane-associated ring finger (C3HC4) 10, E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_2513 chr1 94188762 94189019 + 18.53139 NA intron (NM_001261408, intron 2 of 13) intron (NM_001261408, intron 2 of 13) -41496 NM_003567 8412 Hs.36958 NM_003567 HPRD:05268 BCAR3 NSP2|SH2D3B breast cancer anti-estrogen resistance 3 protein-coding 13-PTNLD9-TUMOR_peak_9044 chr11 10814136 10814345 + 18.53139 NA Intergenic Intergenic 8915 NR_004403 692223 Hs.723086 NR_004403 SNORD97 U97 small nucleolar RNA, C/D box 97 snoRNA 13-PTNLD9-TUMOR_peak_10812 chr11 85601108 85601364 + 18.53139 NA intron (NM_173556, intron 5 of 11) LTR78|LTR|ERV1 35092 NM_173556 220047 Hs.567774 NM_173556 HPRD:14586 CCDC83 CT148 coiled-coil domain containing 83 protein-coding 13-PTNLD9-TUMOR_peak_9950 chr11 59554573 59554779 + 18.53139 NA intron (NM_001178040, intron 3 of 9) intron (NM_001178040, intron 3 of 9) 23669 NM_017840 54948 Hs.530734 NM_017840 HPRD:14743 MRPL16 L16mt|MRP-L16 mitochondrial ribosomal protein L16 protein-coding 13-PTNLD9-TUMOR_peak_50366 chr8 23780250 23780405 + 18.53139 NA Intergenic Intergenic -68007 NM_003155 6781 Hs.25590 NM_003155 HPRD:03115 STC1 STC stanniocalcin 1 protein-coding 13-PTNLD9-TUMOR_peak_51166 chr8 75746921 75747146 + 18.53139 NA intron (NM_015886, intron 2 of 5) intron (NM_015886, intron 2 of 5) 10261 NM_015886 51050 Hs.98558 NM_015886 HPRD:06150 PI15 CRISP8|P24TI|P25TI peptidase inhibitor 15 protein-coding 13-PTNLD9-TUMOR_peak_40998 chr5 60014127 60014308 + 18.53139 NA Intergenic Intergenic -18224 NM_018369 55789 Hs.482233 NM_018369 HPRD:16794 DEPDC1B BRCC3|XTP1 DEP domain containing 1B protein-coding 13-PTNLD9-TUMOR_peak_42766 chr5 155823783 155823939 + 18.53139 NA intron (NM_001128209, intron 2 of 7) MIR|SINE|MIR 70094 NM_000337 6444 Hs.387207 NM_000337 HPRD:03246 SGCD 35DAG|CMD1L|DAGD|SG-delta|SGCDP|SGD sarcoglycan, delta (35kDa dystrophin-associated glycoprotein) protein-coding 13-PTNLD9-TUMOR_peak_30480 chr20 15811912 15812144 + 18.53139 NA intron (NM_080676, intron 8 of 16) intron (NM_080676, intron 8 of 16) 634524 NM_001033087 140733 Hs.661576 NM_080676 HPRD:16640 MACROD2 C20orf133 MACRO domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_50894 chr8 49406449 49406620 + 18.53139 NA Intergenic Intergenic -57593 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 13-PTNLD9-TUMOR_peak_5092 chr1 203488611 203488884 + 18.52879 NA Intergenic Intergenic 25476 NM_014359 26254 Hs.632468 NM_014359 HPRD:05498 OPTC OPT opticin protein-coding 13-PTNLD9-TUMOR_peak_25935 chr2 1420974 1421763 + 18.52879 NA intron (NM_175722, intron 1 of 14) intron (NM_175722, intron 1 of 14) 3188 NM_175721 7173 Hs.467554 NM_000547 HPRD:06000 TPO MSA|TDH2A|TPX thyroid peroxidase protein-coding 13-PTNLD9-TUMOR_peak_49916 chr8 61460 61602 + 18.52807 NA Intergenic Intergenic 55493 NM_001005504 441308 Hs.690459 NM_001005504 OR4F21 OR4F21P olfactory receptor, family 4, subfamily F, member 21 protein-coding 13-PTNLD9-TUMOR_peak_32982 chr22 25378328 25378555 + 18.52314 NA Intergenic Intergenic -43127 NM_001001663 255349 Hs.329040 NM_001001663 HPRD:17327 TMEM211 bA9F11.1 transmembrane protein 211 protein-coding 13-PTNLD9-TUMOR_peak_13505 chr12 95397336 95397601 + 18.52314 NA promoter-TSS (NM_001258338) promoter-TSS (NM_001258338) 21 NM_018838 55967 Hs.506374 NM_018838 HPRD:16781 NDUFA12 B17.2|DAP13 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12 protein-coding 13-PTNLD9-TUMOR_peak_9604 chr11 42256241 42256544 + 18.52314 NA intron (NR_038309, intron 4 of 5) intron (NR_038309, intron 4 of 5) 18848 NR_038309 100507205 Hs.99310 NR_038309 LOC100507205 - uncharacterized LOC100507205 ncRNA 13-PTNLD9-TUMOR_peak_28159 chr2 114413748 114414246 + 18.51509 NA Intergenic L1PA4|LINE|L1 29180 NM_007082 11159 Hs.446425 NM_007082 HPRD:10394 RABL2A - RAB, member of RAS oncogene family-like 2A protein-coding 13-PTNLD9-TUMOR_peak_54453 chr9 114721941 114722191 + 18.51509 NA Intergenic Intergenic 27686 NR_039814 100616114 NR_039814 MIR4668 - microRNA 4668 ncRNA 13-PTNLD9-TUMOR_peak_43346 chr5 180337752 180338149 + 18.51509 NA intron (NM_001159710, intron 1 of 6) MER76|LTR|ERVL 1386 NM_001159710 79908 Hs.189109 NM_024850 HPRD:12549 BTNL8 BTN9.2 butyrophilin-like 8 protein-coding 13-PTNLD9-TUMOR_peak_9397 chr11 29755972 29756177 + 18.50733 NA Intergenic MER115|DNA|hAT-Tip100 282503 NM_002233 3739 Hs.592002 NM_002233 HPRD:01444 KCNA4 HBK4|HK1|HPCN2|HUKII|KCNA4L|KCNA8|KV1.4|PCN2 potassium voltage-gated channel, shaker-related subfamily, member 4 protein-coding 13-PTNLD9-TUMOR_peak_3455 chr1 148766521 148767133 + 18.50733 NA intron (NR_104217, intron 2 of 17) intron (NR_104217, intron 2 of 17) -39188 NM_001144032 730262 NM_001144032 PPIAL4E COAS2 peptidylprolyl isomerase A (cyclophilin A)-like 4E protein-coding 13-PTNLD9-TUMOR_peak_39365 chr4 134786865 134787038 + 18.50733 NA Intergenic ERV3-16A3_LTR|LTR|ERVL 335952 NM_001114734 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein, cytoplasmic 4-like protein-coding 13-PTNLD9-TUMOR_peak_7478 chr10 62371019 62371449 + 18.50733 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) -38520 NM_001204404 288 Hs.499725 NM_001149 HPRD:02715 ANK3 ANKYRIN-G|MRT37 ankyrin 3, node of Ranvier (ankyrin G) protein-coding 13-PTNLD9-TUMOR_peak_48441 chr7 98798716 98798914 + 18.50733 NA intron (NM_001145715, intron 2 of 9) L1MB7|LINE|L1 6274 NM_001145715 402569 Hs.253050 NM_001145715 ENSG00000185467 KPNA7 - karyopherin alpha 7 (importin alpha 8) protein-coding 13-PTNLD9-TUMOR_peak_36058 chr3 136497774 136498082 + 18.49803 NA Intergenic Intergenic -26683 NM_005862 10274 Hs.412586 NM_005862 HPRD:05076 STAG1 SA1|SCC3A stromal antigen 1 protein-coding 13-PTNLD9-TUMOR_peak_7340 chr10 50760264 50760549 + 18.49803 NA Intergenic LTR23|LTR|ERV1 -12822 NM_001277059 101243544 Hs.49063 NM_001277058 ENSG00000243251 ERCC6-PGBD3 CPFP|CSB-PGBD3 ERCC6-PGBD3 readthrough protein-coding 13-PTNLD9-TUMOR_peak_42574 chr5 148819566 148819751 + 18.49803 NA Intergenic Intergenic 9449 NR_029686 406937 NR_029686 miRBase:MI0000461 MIR145 MIRN145|miR-145|miRNA145 microRNA 145 ncRNA 13-PTNLD9-TUMOR_peak_19995 chr16 85801285 85801463 + 18.49803 NA Intergenic Intergenic -16685 NM_206967 404550 Hs.461655 NM_206967 HPRD:14460 C16orf74 - chromosome 16 open reading frame 74 protein-coding 13-PTNLD9-TUMOR_peak_9093 chr11 12308610 12308776 + 18.49803 NA 5' UTR (NM_032867, exon 1 of 9) 5' UTR (NM_032867, exon 1 of 9) 246 NM_032867 84953 Hs.128196 NM_032867 HPRD:08610 MICALCL Ebitein1 MICAL C-terminal like protein-coding 13-PTNLD9-TUMOR_peak_16562 chr14 100046232 100046578 + 18.49280 NA intron (NM_001144995, intron 1 of 5) intron (NM_001144995, intron 1 of 5) 24322 NM_001144995 317762 Hs.709288 NM_001144995 ENSG00000205476 CCDC85C - coiled-coil domain containing 85C protein-coding 13-PTNLD9-TUMOR_peak_48567 chr7 100760645 100760952 + 18.48268 NA Intergenic Intergenic -9572 NM_000602 5054 Hs.414795 NM_000602 HPRD:01418 SERPINE1 PAI|PAI-1|PAI1|PLANH1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 protein-coding 13-PTNLD9-TUMOR_peak_52392 chr8 143814000 143814260 + 18.47960 NA intron (NM_016647, intron 1 of 1) HERVIP10FH-int|LTR|ERV1 5509 NM_016647 51337 Hs.368402 NM_016647 HPRD:14241 THEM6 C8orf55|DSCD75 thioesterase superfamily member 6 protein-coding 13-PTNLD9-TUMOR_peak_43794 chr6 11766860 11767073 + 18.47960 NA intron (NM_032744, intron 2 of 5) intron (NM_032744, intron 2 of 5) 12314 NM_001143948 84830 Hs.126409 NM_032744 HPRD:12836 ADTRP AIG1L|C6orf105|dJ413H6.1 androgen-dependent TFPI-regulating protein protein-coding 13-PTNLD9-TUMOR_peak_22943 chr18 33894800 33895034 + 18.47816 NA intron (NM_001281739, intron 1 of 23) intron (NM_001281739, intron 1 of 23) 17258 NM_001281739 80206 Hs.630884 NM_025135 HPRD:16894 FHOD3 FHOS2|Formactin2 formin homology 2 domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_31360 chr20 48036930 48037134 + 18.47816 NA intron (NM_004975, intron 1 of 1) intron (NM_004975, intron 1 of 1) 62149 NM_004975 3745 Hs.84244 NM_004975 KCNB1 DRK1|KV2.1|h-DRK1 potassium voltage-gated channel, Shab-related subfamily, member 1 protein-coding 13-PTNLD9-TUMOR_peak_41685 chr5 107205482 107205690 + 18.47816 NA intron (NM_001163315, intron 8 of 8) intron (NM_001163315, intron 8 of 8) -198990 NM_001962 1946 Hs.288741 NM_001962 HPRD:03324 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin-A5 protein-coding 13-PTNLD9-TUMOR_peak_50292 chr8 22439594 22439818 + 18.47486 NA intron (NM_176871, intron 2 of 9) intron (NM_176871, intron 2 of 9) 1719 NM_176871 64236 Hs.632034 NM_021630 HPRD:17831 PDLIM2 MYSTIQUE|SLIM PDZ and LIM domain 2 (mystique) protein-coding 13-PTNLD9-TUMOR_peak_44532 chr6 31369281 31369485 + 18.47486 NA intron (NM_001289152, intron 1 of 5) AluJr|SINE|Alu 1822 NM_001289153 100507436 Hs.130838 NM_000247 ENSG00000204520 MICA MIC-A|PERB11.1 MHC class I polypeptide-related sequence A protein-coding 13-PTNLD9-TUMOR_peak_1367 chr1 41952030 41952389 + 18.46519 NA Intergenic Intergenic -1865 NM_001956 1907 Hs.1407 NM_001956 HPRD:07173 EDN2 ET2|PPET2 endothelin 2 protein-coding 13-PTNLD9-TUMOR_peak_49556 chr7 148663364 148663541 + 18.46302 NA Intergenic L1M3|LINE|L1 62330 NM_004911 9601 Hs.93659 NM_004911 HPRD:06501 PDIA4 ERP70|ERP72|ERp-72 protein disulfide isomerase family A, member 4 protein-coding 13-PTNLD9-TUMOR_peak_2345 chr1 86078465 86078765 + 18.46285 NA Intergenic Intergenic 32171 NM_001554 3491 Hs.8867 NM_001554 HPRD:09089 CYR61 CCN1|GIG1|IGFBP10 cysteine-rich, angiogenic inducer, 61 protein-coding 13-PTNLD9-TUMOR_peak_1804 chr1 53611918 53612206 + 18.46256 NA Intergenic Intergenic -3758 NM_006671 6512 Hs.104637 NM_006671 HPRD:09194 SLC1A7 AAAT|EAAT5 solute carrier family 1 (glutamate transporter), member 7 protein-coding 13-PTNLD9-TUMOR_peak_22530 chr18 8800543 8800859 + 18.46256 NA intron (NM_015210, intron 10 of 16) intron (NM_015210, intron 10 of 16) 83332 NM_015210 23255 Hs.707920 NM_015210 HPRD:11110 MTCL1 CCDC165|KIAA0802|SOGA2 microtubule crosslinking factor 1 protein-coding 13-PTNLD9-TUMOR_peak_1330 chr1 41341449 41341735 + 18.46256 NA Intergenic (CTG)n|Simple_repeat|Simple_repeat -13574 NM_133467 163732 Hs.355820 NM_133467 HPRD:06011 CITED4 - Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4 protein-coding 13-PTNLD9-TUMOR_peak_11755 chr12 285596 285883 + 18.45778 NA 3' UTR (NM_001170738, exon 14 of 14) 3' UTR (NM_001170738, exon 14 of 14) -27072 NR_120475 101929384 Hs.569138 NR_120475 LOC101929384 - uncharacterized LOC101929384 ncRNA 13-PTNLD9-TUMOR_peak_47305 chr7 42533273 42533483 + 18.45689 NA Intergenic Intergenic 212668 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 13-PTNLD9-TUMOR_peak_348 chr1 9826833 9827192 + 18.45689 NA intron (NM_001009566, intron 2 of 18) intron (NM_001009566, intron 2 of 18) 57538 NM_001009566 22883 Hs.29665 NM_014944 HPRD:10837 CLSTN1 ALC-ALPHA|CDHR12|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2 calsyntenin 1 protein-coding 13-PTNLD9-TUMOR_peak_37155 chr3 188618493 188618661 + 18.45689 NA Intergenic Intergenic 46851 NR_046873 100874043 Hs.616287 NR_046873 TPRG1-AS1 - TPRG1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_27779 chr2 98780856 98781028 + 18.45689 NA intron (NM_144992, intron 8 of 27) MIR|SINE|MIR 77347 NM_144992 200403 Hs.269977 NM_144992 HPRD:14510 VWA3B - von Willebrand factor A domain containing 3B protein-coding 13-PTNLD9-TUMOR_peak_11857 chr12 3563456 3563808 + 18.44684 NA intron (NM_001256536, intron 1 of 9) intron (NM_001256536, intron 1 of 9) -36732 NM_019854 56341 Hs.504530 NM_019854 HPRD:11029 PRMT8 HRMT1L3|HRMT1L4 protein arginine methyltransferase 8 protein-coding 13-PTNLD9-TUMOR_peak_10531 chr11 71724393 71724764 + 18.44684 NA promoter-TSS (NR_104178) promoter-TSS (NR_104178) -759 NR_104178 100128494 Hs.713607 NR_104178 LOC100128494 - uncharacterized LOC100128494 ncRNA 13-PTNLD9-TUMOR_peak_21448 chr17 48255647 48255979 + 18.44161 NA Intergenic Intergenic -5976 NR_024193 373861 Hs.25934 NM_194072 HILS1 - histone linker H1 domain, spermatid-specific 1, pseudogene pseudo 13-PTNLD9-TUMOR_peak_3542 chr1 150164382 150164575 + 18.44161 NA Intergenic Intergenic 42308 NM_016274 51177 Hs.438824 NM_016274 HPRD:12217 PLEKHO1 CKIP-1|OC120 pleckstrin homology domain containing, family O member 1 protein-coding 13-PTNLD9-TUMOR_peak_31120 chr20 42780301 42780617 + 18.44161 NA intron (NM_020433, intron 2 of 5) L2b|LINE|L2 35759 NM_175913 57158 Hs.441737 NM_020433 HPRD:12006 JPH2 CMH17|JP-2|JP2 junctophilin 2 protein-coding 13-PTNLD9-TUMOR_peak_19803 chr16 77342174 77342448 + 18.43471 NA intron (NM_199355, intron 16 of 22) intron (NM_199355, intron 16 of 22) 108962 NM_001129979 100130958 Hs.734779 NM_001129979 ENSG00000205078 SYCE1L MRP2 synaptonemal complex central element protein 1-like protein-coding 13-PTNLD9-TUMOR_peak_47013 chr7 21153229 21153609 + 18.43113 NA Intergenic Intergenic 286502 NR_026673 222901 Hs.722187 NR_026673 ENSG00000219451 RPL23P8 RPL23_4_790 ribosomal protein L23 pseudogene 8 pseudo 13-PTNLD9-TUMOR_peak_37090 chr3 186734707 186735057 + 18.42527 NA intron (NM_173216, intron 2 of 7) intron (NM_173216, intron 2 of 7) -4783 NM_003032 6480 Hs.207459 NM_003032 HPRD:00184 ST6GAL1 SIAT1|ST6GalI|ST6N ST6 beta-galactosamide alpha-2,6-sialyltranferase 1 protein-coding 13-PTNLD9-TUMOR_peak_25949 chr2 1720885 1721257 + 18.42527 NA intron (NM_012293, intron 1 of 22) intron (NM_012293, intron 1 of 22) 27248 NM_012293 7837 Hs.332197 NM_012293 ENSG00000130508 PXDN COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO peroxidasin homolog (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_48546 chr7 100463188 100463536 + 18.42240 NA TTS (NM_001267814) TTS (NM_001267814) -1588 NM_003302 7205 Hs.534360 NM_003302 HPRD:04242 TRIP6 OIP-1|OIP1|TRIP-6|TRIP6i2|ZRP-1 thyroid hormone receptor interactor 6 protein-coding 13-PTNLD9-TUMOR_peak_44165 chr6 25036305 25036506 + 18.41715 NA intron (NM_001286446, intron 1 of 13) intron (NM_001286446, intron 1 of 13) 5991 NM_001286446 9750 Hs.559459 NM_014722 HPRD:12881 FAM65B C6orf32|DIFF40|DIFF48|MYONAP|PL48 family with sequence similarity 65, member B protein-coding 13-PTNLD9-TUMOR_peak_23282 chr18 55853933 55854106 + 18.41715 NA intron (NM_001243960, intron 2 of 28) MIRb|SINE|MIR -8603 NM_001144970 23327 Hs.185677 NM_015277 HPRD:05903 NEDD4L NEDD4-2|NEDD4.2|RSP5|hNEDD4-2 neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_45379 chr6 56673817 56674196 + 18.41715 NA intron (NM_001144769, intron 4 of 96) intron (NM_001144769, intron 4 of 96) 34457 NM_183380 667 Hs.604915 NM_001723 HPRD:00222 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 13-PTNLD9-TUMOR_peak_41680 chr5 106893036 106893350 + 18.41715 NA intron (NM_001962, intron 1 of 4) intron (NM_001962, intron 1 of 4) 113403 NM_001962 1946 Hs.288741 NM_001962 HPRD:03324 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin-A5 protein-coding 13-PTNLD9-TUMOR_peak_29361 chr2 191583574 191583847 + 18.41715 NA Intergenic Intergenic 69862 NM_005966 4664 Hs.107474 NM_005966 HPRD:02881 NAB1 - NGFI-A binding protein 1 (EGR1 binding protein 1) protein-coding 13-PTNLD9-TUMOR_peak_50165 chr8 17640965 17641217 + 18.41715 NA intron (NM_001001924, intron 1 of 14) intron (NM_001001924, intron 1 of 14) 17335 NM_001001924 57509 Hs.7946 NM_020749 HPRD:11376 MTUS1 ATBP|ATIP|ICIS|MP44|MTSG1 microtubule associated tumor suppressor 1 protein-coding 13-PTNLD9-TUMOR_peak_14812 chr13 54603385 54603684 + 18.41470 NA Intergenic Intergenic 103472 NR_108063 100507428 Hs.351262 NR_108062 ENSG00000234787 LINC00458 LncRNA-ES3 long intergenic non-protein coding RNA 458 ncRNA 13-PTNLD9-TUMOR_peak_26575 chr2 36788641 36788910 + 18.41470 NA intron (NM_001042548, intron 5 of 8) intron (NM_001042548, intron 5 of 8) 36557 NM_001042548 9637 Hs.258563 NM_005102 HPRD:09213 FEZ2 HUM3CL fasciculation and elongation protein zeta 2 (zygin II) protein-coding 13-PTNLD9-TUMOR_peak_8562 chr10 126812375 126812642 + 18.41470 NA intron (NM_001083914, intron 1 of 10) intron (NM_001083914, intron 1 of 10) 34876 NM_001290215 1488 Hs.501345 NM_001329 HPRD:04016 CTBP2 - C-terminal binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_46660 chr7 1032815 1033041 + 18.41080 NA Intergenic Intergenic 10093 NM_017781 54905 Hs.272795 NM_017781 HPRD:07901 CYP2W1 - cytochrome P450, family 2, subfamily W, polypeptide 1 protein-coding 13-PTNLD9-TUMOR_peak_4538 chr1 178439523 178440027 + 18.41080 NA intron (NM_170692, intron 17 of 17) intron (NM_170692, intron 17 of 17) -42437 NM_001170722 84066 Hs.534501 NM_032126 HPRD:13169 TEX35 C1orf49|TSC24 testis expressed 35 protein-coding 13-PTNLD9-TUMOR_peak_53888 chr9 90255476 90256018 + 18.41080 NA exon (NM_001288730, exon 9 of 26) exon (NM_001288730, exon 9 of 26) -85227 NM_001912 1514 Hs.731507 NM_001912 HPRD:00293 CTSL CATL|CTSL1|MEP cathepsin L protein-coding 13-PTNLD9-TUMOR_peak_40194 chr5 1542903 1543222 + 18.40135 NA Intergenic MLT1J|LTR|ERVL-MaLR -18986 NM_024830 79888 Hs.368853 NM_024830 HPRD:08572 LPCAT1 AYTL2|PFAAP3|lpcat lysophosphatidylcholine acyltransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_41550 chr5 95158441 95158727 + 18.40135 NA promoter-TSS (NM_001243658) promoter-TSS (NM_001243658) -7 NM_001118890 2745 Hs.28988 NM_002064 HPRD:02707 GLRX GRX|GRX1 glutaredoxin (thioltransferase) protein-coding 13-PTNLD9-TUMOR_peak_5855 chr1 233210882 233211157 + 18.39013 NA intron (NM_014801, intron 23 of 33) L1MD1|LINE|L1 124649 NM_032324 84284 Hs.642715 NM_032324 NTPCR C1orf57|HCR-NTPase nucleoside-triphosphatase, cancer-related protein-coding 13-PTNLD9-TUMOR_peak_22049 chr17 74117625 74117795 + 18.39013 NA Intergenic CpG -17842 NM_015219 23265 Hs.514496 NM_015219 HPRD:16292 EXOC7 2-5-3p|EX070|EXO70|EXOC1|Exo70p|YJL085W exocyst complex component 7 protein-coding 13-PTNLD9-TUMOR_peak_11820 chr12 2445565 2445768 + 18.39013 NA intron (NM_001129832, intron 3 of 47) intron (NM_001129832, intron 3 of 47) 66724 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_35625 chr3 124128806 124129100 + 18.39013 NA intron (NM_001024660, intron 13 of 59) intron (NM_001024660, intron 13 of 59) 35774 NR_106731 102464832 NR_106731 MIR6083 hsa-mir-6083 microRNA 6083 ncRNA 13-PTNLD9-TUMOR_peak_50854 chr8 47874161 47874350 + 18.39013 NA Intergenic Intergenic 121747 NR_027013 497634 Hs.406982 NR_027012 ENSG00000253314 LINC00293 BEYLA|NCRNA00293 long intergenic non-protein coding RNA 293 ncRNA 13-PTNLD9-TUMOR_peak_39552 chr4 146601151 146601354 + 18.39013 NA promoter-TSS (NM_001080531) promoter-TSS (NM_001080531) -104 NM_001080531 646603 Hs.452865 NM_001080531 ENSG00000237136 C4orf51 - chromosome 4 open reading frame 51 protein-coding 13-PTNLD9-TUMOR_peak_21297 chr17 45317394 45317715 + 18.39013 NA Intergenic Intergenic -13654 NM_000212 3690 Hs.218040 NM_000212 HPRD:01428 ITGB3 BDPLT16|BDPLT2|CD61|GP3A|GPIIIa|GT integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61) protein-coding 13-PTNLD9-TUMOR_peak_42602 chr5 149293450 149293626 + 18.38251 NA intron (NM_000440, intron 6 of 21) MLT1J-int|LTR|ERVL-MaLR 19002 NR_110534 644762 Hs.730366 NR_110534 LOC644762 - mitochondrial fission factor pseudogene pseudo 13-PTNLD9-TUMOR_peak_7705 chr10 73631103 73631346 + 18.38251 NA Intergenic MER57F|LTR|ERV1 -20142 NM_001042466 5660 Hs.523004 NM_002778 HPRD:01460 PSAP GLBA|SAP1 prosaposin protein-coding 13-PTNLD9-TUMOR_peak_26107 chr2 10638064 10638302 + 18.37206 NA Intergenic Intergenic 48329 NR_110597 101929715 Hs.634550 NR_110597 LOC101929715 - uncharacterized LOC101929715 ncRNA 13-PTNLD9-TUMOR_peak_34645 chr3 52096715 52096899 + 18.36209 NA non-coding (NR_027331, exon 1 of 1) non-coding (NR_027331, exon 1 of 1) 2321 NR_027331 100128378 Hs.640106 NM_001123039 LINC00696 C3orf74 long intergenic non-protein coding RNA 696 ncRNA 13-PTNLD9-TUMOR_peak_37001 chr3 184455991 184456273 + 18.36209 NA Intergenic Intergenic -26296 NM_022149 64110 Hs.306123 NM_022149 HPRD:14348 MAGEF1 - melanoma antigen family F, 1 protein-coding 13-PTNLD9-TUMOR_peak_6812 chr10 30100713 30100982 + 18.35810 NA Intergenic Intergenic -76117 NM_003174 6840 Hs.499209 NM_003174 HPRD:04992 SVIL - supervillin protein-coding 13-PTNLD9-TUMOR_peak_56665 chrX 152677620 152677977 + 18.35810 NA Intergenic Intergenic -5983 NM_001136273 139735 Hs.534554 NM_001136273 ENSG00000189420 ZFP92 ZNF897 ZFP92 zinc finger protein protein-coding 13-PTNLD9-TUMOR_peak_8139 chr10 100029304 100029540 + 18.35649 NA Intergenic Intergenic -1415 NM_032211 84171 Hs.306814 NM_032211 HPRD:09538 LOXL4 LOXC lysyl oxidase-like 4 protein-coding 13-PTNLD9-TUMOR_peak_1841 chr1 54623607 54624078 + 18.35649 NA Intergenic Intergenic -5163 NM_201546 200008 Hs.568555 NM_201546 CDCP2 - CUB domain containing protein 2 protein-coding 13-PTNLD9-TUMOR_peak_39589 chr4 148928465 148928807 + 18.35649 NA intron (NM_024605, intron 18 of 22) intron (NM_024605, intron 18 of 22) 224890 NR_039962 100616246 NR_039962 MIR4799 - microRNA 4799 ncRNA 13-PTNLD9-TUMOR_peak_22105 chr17 75251499 75251819 + 18.35597 NA Intergenic Intergenic -25833 NM_001113491 10801 Hs.440932 NM_006640 HPRD:10360 SEPT9 AF17q25|MSF|MSF1|NAPB|PNUTL4|SINT1|SeptD1 septin 9 protein-coding 13-PTNLD9-TUMOR_peak_9194 chr11 16691453 16691723 + 18.33462 NA Intergenic L1PREC2|LINE|L1 -68560 NM_014267 10944 Hs.645792 NM_014267 C11orf58 IMAGE145052|SMAP chromosome 11 open reading frame 58 protein-coding 13-PTNLD9-TUMOR_peak_30141 chr2 239505756 239506039 + 18.33462 NA Intergenic Intergenic -41757 NR_037809 151171 Hs.652076 NR_037809 ENSG00000225493 LINC01107 - long intergenic non-protein coding RNA 1107 ncRNA 13-PTNLD9-TUMOR_peak_15108 chr13 110746997 110747335 + 18.33462 NA Intergenic Intergenic 212330 NM_001845 1282 Hs.17441 NM_001845 HPRD:00359 COL4A1 HANAC|ICH|POREN1|arresten collagen, type IV, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_15950 chr14 61719502 61719739 + 18.33462 NA Intergenic Intergenic 28910 NM_001017970 161291 Hs.146180 NM_001017970 HPRD:18567 TMEM30B CDC50B transmembrane protein 30B protein-coding 13-PTNLD9-TUMOR_peak_2390 chr1 88839565 88839758 + 18.33462 NA Intergenic MLT1J|LTR|ERVL-MaLR -310261 NM_006256 5586 Hs.440833 NM_006256 HPRD:03972 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 13-PTNLD9-TUMOR_peak_43029 chr5 172141846 172142132 + 18.33393 NA Intergenic Intergenic -40517 NM_001287812 101928093 Hs.646902 NM_001287812 LOC101928093 - uncharacterized LOC101928093 protein-coding 13-PTNLD9-TUMOR_peak_11906 chr12 5341418 5341796 + 18.32947 NA Intergenic Intergenic 7671 NR_120476 101929584 Hs.436529 NR_120476 ENSG00000256115 LOC101929584 - uncharacterized LOC101929584 ncRNA 13-PTNLD9-TUMOR_peak_15124 chr13 111522511 111522961 + 18.32947 NA promoter-TSS (NR_027701) promoter-TSS (NR_027701) -81 NR_027701 283487 Hs.245390 NM_178514 LINC00346 C13orf29|NCRNA00346 long intergenic non-protein coding RNA 346 ncRNA 13-PTNLD9-TUMOR_peak_4345 chr1 168598077 168598401 + 18.32947 NA Intergenic L2|LINE|L2 52528 NM_002995 6375 Hs.546295 NM_002995 HPRD:02595 XCL1 ATAC|LPTN|LTN|SCM-1|SCM-1a|SCM1|SCM1A|SCYC1 chemokine (C motif) ligand 1 protein-coding 13-PTNLD9-TUMOR_peak_24600 chr19 28284594 28284983 + 18.32947 NA promoter-TSS (NR_027301) promoter-TSS (NR_027301) -15 NR_110690 101927151 Hs.567934 NR_110687 LOC101927151 - uncharacterized LOC101927151 ncRNA 13-PTNLD9-TUMOR_peak_457 chr1 12609900 12610304 + 18.32947 NA Intergenic Intergenic 28949 NR_106788 102466722 NR_106788 MIR6730 hsa-mir-6730 microRNA 6730 ncRNA 13-PTNLD9-TUMOR_peak_11197 chr11 111664449 111664863 + 18.32947 NA intron (NM_001077691, intron 14 of 14) intron (NM_001077691, intron 14 of 14) -27487 NM_181699 5519 Hs.269128 NM_002716 HPRD:04384 PPP2R1B PP2A-Abeta|PR65B protein phosphatase 2, regulatory subunit A, beta protein-coding 13-PTNLD9-TUMOR_peak_34369 chr3 43800721 43801119 + 18.32479 NA Intergenic Intergenic 68545 NM_016006 51099 Hs.19385 NM_016006 ABHD5 CDS|CGI58|IECN2|NCIE2 abhydrolase domain containing 5 protein-coding 13-PTNLD9-TUMOR_peak_16429 chr14 90910556 90910836 + 18.32479 NA Intergenic Intergenic -10878 NR_033986 400238 Hs.131037 NR_033986 ENSG00000233208 LINC00642 - long intergenic non-protein coding RNA 642 ncRNA 13-PTNLD9-TUMOR_peak_13498 chr12 95015510 95015745 + 18.32479 NA intron (NM_020698, intron 1 of 3) intron (NM_020698, intron 1 of 3) -5700 NM_001301036 57458 Hs.370410 NM_020698 HPRD:15519 TMCC3 - transmembrane and coiled-coil domain family 3 protein-coding 13-PTNLD9-TUMOR_peak_8094 chr10 98849226 98849509 + 18.32479 NA intron (NM_003061, intron 4 of 36) intron (NM_003061, intron 4 of 36) -13146 NR_038330 100505540 Hs.568878 NR_038330 ENSG00000234855 SLIT1-AS1 - SLIT1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_54242 chr9 103191668 103191946 + 18.31069 NA promoter-TSS (NM_001198806) promoter-TSS (NM_001198806) 11 NM_001198806 91283 Hs.530272 NM_080655 MSANTD3 C9orf30 Myb/SANT-like DNA-binding domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_12451 chr12 31902163 31902542 + 18.30678 NA Intergenic LTR8|LTR|ERV1 -20244 NM_001278412 196394 Hs.585084 NM_001113402 HPRD:14115 AMN1 - antagonist of mitotic exit network 1 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_42371 chr5 140900787 140901147 + 18.30678 NA intron (NM_005219, intron 27 of 27) intron (NM_005219, intron 27 of 27) 32159 NM_018929 56097 Hs.368160 NM_018929 HPRD:07318 PCDHGC5 PCDH-GAMMA-C5 protocadherin gamma subfamily C, 5 protein-coding 13-PTNLD9-TUMOR_peak_53026 chr9 33234078 33234251 + 18.30236 NA Intergenic Intergenic -6032 NM_014471 27290 Hs.555934 NM_014471 HPRD:11598 SPINK4 HEL136|PEC-60|PEC60 serine peptidase inhibitor, Kazal type 4 protein-coding 13-PTNLD9-TUMOR_peak_5726 chr1 228741698 228742058 + 18.29977 NA Intergenic HSAT4|Satellite|centr -38516 NR_037962 58480 Hs.647774 NM_021205 HPRD:06965 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 13-PTNLD9-TUMOR_peak_23309 chr18 56460654 56461042 + 18.29636 NA Intergenic Intergenic -69213 NM_018181 55205 Hs.529023 NM_018181 HPRD:11724 ZNF532 - zinc finger protein 532 protein-coding 13-PTNLD9-TUMOR_peak_12208 chr12 13403423 13403677 + 18.29636 NA Intergenic MLT2B3|LTR|ERVL 53948 NM_001423 2012 Hs.719042 NM_001423 HPRD:11892 EMP1 CL-20|EMP-1|TMP epithelial membrane protein 1 protein-coding 13-PTNLD9-TUMOR_peak_39860 chr4 170947517 170947758 + 18.29636 NA promoter-TSS (NM_021647) promoter-TSS (NM_021647) -208 NM_021647 9848 Hs.593942 NM_021647 HPRD:14391 MFAP3L NYD-sp9 microfibrillar-associated protein 3-like protein-coding 13-PTNLD9-TUMOR_peak_26205 chr2 16804306 16804572 + 18.29636 NA intron (NM_030797, intron 2 of 11) intron (NM_030797, intron 2 of 11) 42695 NM_030797 81553 Hs.467769 NM_030797 HPRD:07729 FAM49A - family with sequence similarity 49, member A protein-coding 13-PTNLD9-TUMOR_peak_28598 chr2 139122131 139122320 + 18.29636 NA Intergenic Intergenic -137125 NM_001001664 339745 Hs.333297 NM_001001664 HPRD:11261 SPOPL BTBD33 speckle-type POZ protein-like protein-coding 13-PTNLD9-TUMOR_peak_13343 chr12 72341420 72341640 + 18.29059 NA intron (NM_173353, intron 4 of 10) intron (NM_173353, intron 4 of 10) 8904 NM_173353 121278 Hs.736576 NM_173353 HPRD:09594 TPH2 ADHD7|NTPH tryptophan hydroxylase 2 protein-coding 13-PTNLD9-TUMOR_peak_36338 chr3 149160777 149160979 + 18.29059 NA Intergenic Intergenic -31490 NM_004617 7104 Hs.133527 NM_004617 TM4SF4 ILTMP|il-TMP transmembrane 4 L six family member 4 protein-coding 13-PTNLD9-TUMOR_peak_21808 chr17 63543531 63543777 + 18.29059 NA intron (NM_004655, intron 3 of 10) intron (NM_004655, intron 3 of 10) 14086 NM_004655 8313 Hs.156527 NM_004655 HPRD:04935 AXIN2 AXIL|ODCRCS axin 2 protein-coding 13-PTNLD9-TUMOR_peak_42600 chr5 149237190 149237419 + 18.29059 NA TTS (NM_000440) TTS (NM_000440) 75236 NR_110534 644762 Hs.730366 NR_110534 LOC644762 - mitochondrial fission factor pseudogene pseudo 13-PTNLD9-TUMOR_peak_22789 chr18 21407753 21407945 + 18.28704 NA intron (NM_198129, intron 23 of 74) intron (NM_198129, intron 23 of 74) -45135 NM_001127718 3909 Hs.436367 NM_000227 HPRD:02883 LAMA3 BM600|E170|LAMNA|LOCS|lama3a laminin, alpha 3 protein-coding 13-PTNLD9-TUMOR_peak_40357 chr5 13860413 13860764 + 18.28605 NA intron (NM_001369, intron 29 of 78) MER5B|DNA|hAT-Charlie 84001 NM_001369 1767 Hs.212360 NM_001369 HPRD:04514 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein, axonemal, heavy chain 5 protein-coding 13-PTNLD9-TUMOR_peak_479 chr1 14880197 14880694 + 18.27395 NA Intergenic MER5B|DNA|hAT-Charlie -44768 NM_015209 23254 Hs.368823 NM_015209 HPRD:11122 KAZN KAZ kazrin, periplakin interacting protein protein-coding 13-PTNLD9-TUMOR_peak_23911 chr19 9993928 9994080 + 18.27395 NA intron (NM_058164, intron 1 of 5) intron (NM_058164, intron 1 of 5) 48121 NR_038422 5300 Hs.465849 NM_006221 HPRD:03031 PIN1 DOD|UBL5 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 protein-coding 13-PTNLD9-TUMOR_peak_27280 chr2 73613106 73613540 + 18.27395 NA intron (NM_015120, intron 1 of 22) CpG 437 NM_015120 7840 Hs.184720 NM_015120 HPRD:06023 ALMS1 ALSS Alstrom syndrome 1 protein-coding 13-PTNLD9-TUMOR_peak_51483 chr8 103769005 103769205 + 18.26959 NA Intergenic Intergenic -100975 NM_005655 7071 Hs.435001 NM_005655 HPRD:03527 KLF10 EGR-alpha|EGRA|TIEG|TIEG1 Kruppel-like factor 10 protein-coding 13-PTNLD9-TUMOR_peak_28422 chr2 130469354 130469652 + 18.25935 NA Intergenic Intergenic -211247 NR_110285 101927924 Hs.570248 NR_110285 ENSG00000237574 LOC101927924 - uncharacterized LOC101927924 ncRNA 13-PTNLD9-TUMOR_peak_49203 chr7 134584624 134584771 + 18.25935 NA intron (NM_033140, intron 1 of 11) AluJr|SINE|Alu 8546 NM_033140 800 Hs.490203 NM_004342 HPRD:00251 CALD1 CDM|H-CAD|HCAD|L-CAD|LCAD|NAG22 caldesmon 1 protein-coding 13-PTNLD9-TUMOR_peak_27257 chr2 72993186 72993436 + 18.25935 NA intron (NM_015189, intron 1 of 21) L1MEg|LINE|L1 59866 NM_015189 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2 exocyst complex component 6B protein-coding 13-PTNLD9-TUMOR_peak_51675 chr8 117925015 117925356 + 18.25935 NA Intergenic L1PA10|LINE|L1 -25279 NM_001025357 441376 Hs.437551 NM_001025357 AARD C8orf85 alanine and arginine rich domain containing protein protein-coding 13-PTNLD9-TUMOR_peak_36411 chr3 151298411 151298691 + 18.25935 NA Intergenic Intergenic -14768 NR_049818 100847036 NR_049818 miRBase:MI0018165 MIR5186 - microRNA 5186 ncRNA 13-PTNLD9-TUMOR_peak_37699 chr4 4034822 4034987 + 18.25935 NA Intergenic HERVS71-int|LTR|ERV1 -77756 NR_024253 348926 Hs.591720 NR_024253 FAM86EP - family with sequence similarity 86, member A pseudogene pseudo 13-PTNLD9-TUMOR_peak_6050 chr1 240194424 240194605 + 18.25935 NA Intergenic ERVL-E-int|LTR|ERVL 23690 NR_036695 645884 Hs.613280 NR_036695 RPS7P5 RPS7_2_183 ribosomal protein S7 pseudogene 5 pseudo 13-PTNLD9-TUMOR_peak_50710 chr8 41592991 41593212 + 18.25935 NA intron (NM_020476, intron 2 of 41) intron (NM_020476, intron 2 of 41) 62039 NM_020475 286 Hs.654438 NM_000037 HPRD:01693 ANK1 ANK|SPH1|SPH2 ankyrin 1, erythrocytic protein-coding 13-PTNLD9-TUMOR_peak_53205 chr9 37984829 37985171 + 18.25935 NA intron (NM_003028, intron 2 of 5) intron (NM_003028, intron 2 of 5) -80650 NR_024873 92014 Hs.634120 NM_033412 HPRD:14370 SLC25A51 CG7943|MCART1 solute carrier family 25, member 51 protein-coding 13-PTNLD9-TUMOR_peak_10121 chr11 63639441 63639812 + 18.25555 NA intron (NM_004954, intron 1 of 16) intron (NM_004954, intron 1 of 16) -16361 NM_017490 2011 Hs.567261 NM_004954 HPRD:02753 MARK2 EMK-1|EMK1|PAR-1|Par-1b|Par1b MAP/microtubule affinity-regulating kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_8389 chr10 116393065 116393308 + 18.25555 NA intron (NM_001003407, intron 1 of 21) intron (NM_001003407, intron 1 of 21) 24872 NM_002313 3983 Hs.438236 NM_002313 HPRD:03819 ABLIM1 ABLIM|LIMAB1|LIMATIN|abLIM-1 actin binding LIM protein 1 protein-coding 13-PTNLD9-TUMOR_peak_12674 chr12 48206646 48206937 + 18.25555 NA intron (NM_001098416, intron 1 of 24) CpG 6972 NM_001098416 51564 Hs.200063 NM_015401 HPRD:09133 HDAC7 HD7A|HDAC7A histone deacetylase 7 protein-coding 13-PTNLD9-TUMOR_peak_47044 chr7 22622907 22623200 + 18.25555 NA Intergenic MLT1G1|LTR|ERVL-MaLR 20097 NR_038393 100506178 Hs.668122 NR_038393 ENSG00000232759 LOC100506178 - uncharacterized LOC100506178 ncRNA 13-PTNLD9-TUMOR_peak_56656 chrX 152377848 152378208 + 18.25555 NA Intergenic Intergenic 39769 NM_032882 84968 Hs.533301 NM_032882 HPRD:06637 PNMA6A MA6|PNMA6|PNMA6C paraneoplastic Ma antigen family member 6A protein-coding 13-PTNLD9-TUMOR_peak_3090 chr1 120601849 120602079 + 18.24600 NA intron (NM_024408, intron 1 of 33) intron (NM_024408, intron 1 of 33) 10353 NM_001200001 4853 Hs.487360 NM_024408 HPRD:02606 NOTCH2 AGS2|HJCYS|hN2 notch 2 protein-coding 13-PTNLD9-TUMOR_peak_48021 chr7 75677726 75678007 + 18.24478 NA promoter-TSS (NM_016086) promoter-TSS (NM_016086) 529 NM_005918 4191 Hs.520967 NM_005918 HPRD:01099 MDH2 M-MDH|MDH|MGC:3559|MOR1 malate dehydrogenase 2, NAD (mitochondrial) protein-coding 13-PTNLD9-TUMOR_peak_40736 chr5 43067541 43067720 + 18.24478 NA promoter-TSS (NR_034127) promoter-TSS (NR_034127) -89 NR_104651 648987 Hs.649468 NR_034085 ENSG00000177738 LOC648987 - uncharacterized LOC648987 ncRNA 13-PTNLD9-TUMOR_peak_3550 chr1 150286381 150286555 + 18.23670 NA Intergenic Intergenic -7460 NM_004698 9129 Hs.11776 NM_004698 HPRD:07389 PRPF3 HPRP3|HPRP3P|PRP3|Prp3p|RP18|SNRNP90 pre-mRNA processing factor 3 protein-coding 13-PTNLD9-TUMOR_peak_20732 chr17 25798724 25798983 + 18.23670 NA promoter-TSS (NM_014238) promoter-TSS (NM_014238) -183 NM_014238 8844 Hs.133534 NM_014238 KSR1 KSR|RSU2 kinase suppressor of ras 1 protein-coding 13-PTNLD9-TUMOR_peak_32126 chr21 33238478 33238711 + 18.21943 NA Intergenic Intergenic -7034 NM_014586 30811 Hs.109437 NM_014586 HPRD:09410 HUNK - hormonally up-regulated Neu-associated kinase protein-coding 13-PTNLD9-TUMOR_peak_45539 chr6 76463754 76463938 + 18.21943 NA intron (NM_001300899, intron 1 of 32) intron (NM_001300899, intron 1 of 32) 4937 NM_004999 4646 Hs.149387 NM_004999 HPRD:02985 MYO6 DFNA22|DFNB37 myosin VI protein-coding 13-PTNLD9-TUMOR_peak_2891 chr1 113278440 113278719 + 18.21943 NA Intergenic ERVL-E-int|LTR|ERVL 15390 NM_001004440 284467 Hs.439116 NM_182759 HPRD:16877 FAM19A3 TAFA-3|TAFA3 family with sequence similarity 19 (chemokine (C-C motif)-like), member A3 protein-coding 13-PTNLD9-TUMOR_peak_2233 chr1 77787770 77788141 + 18.21943 NA intron (NM_012093, intron 5 of 13) intron (NM_012093, intron 5 of 13) 39668 NM_012093 26289 Hs.559718 NM_012093 HPRD:10472 AK5 AK6 adenylate kinase 5 protein-coding 13-PTNLD9-TUMOR_peak_2300 chr1 84831415 84831595 + 18.21943 NA intron (NR_003927, intron 7 of 8) Tigger15a|DNA|TcMar-Tigger 32071 NR_003927 391051 Hs.647646 NR_003927 UOX UOXP|URICASE urate oxidase, pseudogene pseudo 13-PTNLD9-TUMOR_peak_21900 chr17 70461757 70461958 + 18.21943 NA intron (NR_036488, intron 1 of 3) intron (NR_036488, intron 1 of 3) 127086 NR_036488 100499467 Hs.157726 NR_036488 LINC00673 LINC00511 long intergenic non-protein coding RNA 673 ncRNA 13-PTNLD9-TUMOR_peak_41248 chr5 72607138 72607610 + 18.21943 NA Intergenic Intergenic 136978 NM_004472 2297 Hs.519385 NM_004472 HPRD:03055 FOXD1 FKHL8|FREAC-4|FREAC4 forkhead box D1 protein-coding 13-PTNLD9-TUMOR_peak_380 chr1 10726045 10726263 + 18.21904 NA intron (NM_017766, intron 4 of 15) intron (NM_017766, intron 4 of 15) 130579 NM_001079843 54897 Hs.439894 NM_017766 HPRD:07897 CASZ1 CAS11|CST|SRG|ZNF693|dJ734G22.1 castor zinc finger 1 protein-coding 13-PTNLD9-TUMOR_peak_1246 chr1 39649397 39649729 + 18.21904 NA intron (NM_012090, intron 1 of 92) intron (NM_012090, intron 1 of 92) 99724 NM_012090 23499 Hs.472475 NM_012090 HPRD:09750 MACF1 ABP620|ACF7|MACF|OFC4 microtubule-actin crosslinking factor 1 protein-coding 13-PTNLD9-TUMOR_peak_2785 chr1 110316413 110316539 + 18.21904 NA Intergenic Intergenic -9832 NM_024526 79574 Hs.485352 NM_024526 HPRD:13277 EPS8L3 EPS8R3 EPS8-like 3 protein-coding 13-PTNLD9-TUMOR_peak_41548 chr5 95048105 95048443 + 18.21904 NA Intergenic MLT1G|LTR|ERVL-MaLR -18576 NM_014899 22836 Hs.445030 NM_014899 HPRD:09557 RHOBTB3 - Rho-related BTB domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_41116 chr5 67573301 67573593 + 18.21904 NA intron (NM_181523, intron 4 of 15) intron (NM_181523, intron 4 of 15) -10805 NM_181524 5295 Hs.132225 NM_181504 HPRD:01381 PIK3R1 AGM7|GRB1|p85|p85-ALPHA phosphoinositide-3-kinase, regulatory subunit 1 (alpha) protein-coding 13-PTNLD9-TUMOR_peak_48562 chr7 100660776 100661008 + 18.21904 NA promoter-TSS (NR_120520) promoter-TSS (NR_120520) -3 NR_120520 102724094 Hs.571256 NR_120519 LOC102724094 - uncharacterized LOC102724094 ncRNA 13-PTNLD9-TUMOR_peak_49808 chr7 156268351 156268643 + 18.21904 NA intron (NR_103858, intron 1 of 1) L2b|LINE|L2 -30215 NR_038232 285889 Hs.407095 NR_038232 ENSG00000233878 LOC285889 - uncharacterized LOC285889 ncRNA 13-PTNLD9-TUMOR_peak_1085 chr1 35730586 35730830 + 18.21904 NA Intergenic Intergenic -3860 NM_005095 9202 Hs.269211 NM_005095 HPRD:10326 ZMYM4 CDIR|MYM|ZNF198L3|ZNF262 zinc finger, MYM-type 4 protein-coding 13-PTNLD9-TUMOR_peak_3279 chr1 145138963 145139142 + 18.20689 NA intron (NM_001277444, intron 20 of 24) intron (NM_001277444, intron 20 of 24) 42645 NM_004892 9554 Hs.632438 NM_004892 SEC22B ERS-24|SEC22L1 SEC22 vesicle trafficking protein homolog B (S. cerevisiae) (gene/pseudogene) protein-coding 13-PTNLD9-TUMOR_peak_44846 chr6 37024211 37024879 + 18.20486 NA Intergenic Intergenic 51122 NM_173558 221472 Hs.509664 NM_173558 HPRD:05478 FGD2 ZFYVE4 FYVE, RhoGEF and PH domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_43377 chr6 308222 308554 + 18.20486 NA intron (NR_104474, intron 2 of 5) intron (NR_104474, intron 2 of 5) 16331 NM_001286555 56940 Hs.29106 NM_020185 HPRD:13255 DUSP22 JKAP|JSP-1|JSP1|LMW-DSP2|LMWDSP2|MKP-x|MKPX|VHX dual specificity phosphatase 22 protein-coding 13-PTNLD9-TUMOR_peak_15693 chr14 50234699 50234917 + 18.20406 NA promoter-TSS (NM_014315) promoter-TSS (NM_014315) 21 NM_014315 23588 Hs.509264 NM_014315 HPRD:08824 KLHDC2 HCLP-1|HCLP1|LCP kelch domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_34252 chr3 37000264 37000440 + 18.20406 NA Intergenic Intergenic -13804 NM_014831 9881 Hs.170999 NM_014831 ENSG00000168016 TRANK1 LBA1 tetratricopeptide repeat and ankyrin repeat containing 1 protein-coding 13-PTNLD9-TUMOR_peak_21710 chr17 60780594 60780856 + 18.20406 NA intron (NM_001100875, intron 10 of 10) intron (NM_001100875, intron 10 of 10) -18133 NR_036146 100422923 NR_036146 MIR548W - microRNA 548w ncRNA 13-PTNLD9-TUMOR_peak_52337 chr8 142085992 142086381 + 18.20297 NA Intergenic Intergenic -52534 NM_014957 22898 Hs.18166 NM_014957 HPRD:11114 DENND3 - DENN/MADD domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_21590 chr17 55952776 55953045 + 18.19838 NA intron (NM_001292025, intron 3 of 10) intron (NM_001292025, intron 3 of 10) -25477 NM_016070 51649 Hs.5836 NM_016070 MRPS23 HSPC329|MRP-S23 mitochondrial ribosomal protein S23 protein-coding 13-PTNLD9-TUMOR_peak_3856 chr1 155194476 155194740 + 18.19458 NA intron (NR_002188, intron 1 of 12) intron (NR_002188, intron 1 of 12) 2717 NR_002188 2630 Hs.719930 NR_002188 ENSG00000160766 GBAP1 GBAP glucosidase, beta, acid pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_45230 chr6 47120785 47121258 + 18.19455 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -110939 NM_153840 266977 Hs.733762 NM_025048 HPRD:08661 GPR110 KPG_012|PGR19|hGPCR36 G protein-coupled receptor 110 protein-coding 13-PTNLD9-TUMOR_peak_45603 chr6 82854015 82854262 + 18.19455 NA Intergenic Intergenic 103333 NM_015525 25998 Hs.306425 NM_015525 HPRD:12105 IBTK BTBD26|BTKI inhibitor of Bruton agammaglobulinemia tyrosine kinase protein-coding 13-PTNLD9-TUMOR_peak_25945 chr2 1623447 1623614 + 18.19455 NA Intergenic Intergenic 124789 NM_012293 7837 Hs.332197 NM_012293 ENSG00000130508 PXDN COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO peroxidasin homolog (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_1141 chr1 36696914 36697111 + 18.19455 NA intron (NM_005119, intron 1 of 11) intron (NM_005119, intron 1 of 11) 6995 NM_005119 9967 Hs.744057 NM_005119 HPRD:07543 THRAP3 TRAP150 thyroid hormone receptor associated protein 3 protein-coding 13-PTNLD9-TUMOR_peak_35238 chr3 106447213 106447403 + 18.19455 NA Intergenic Intergenic 512177 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 13-PTNLD9-TUMOR_peak_52296 chr8 140972367 140972653 + 18.19032 NA intron (NM_031466, intron 19 of 22) MIR|SINE|MIR -257211 NM_001282534 51305 Hs.493037 NM_001282534 HPRD:16167 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium channel, subfamily K, member 9 protein-coding 13-PTNLD9-TUMOR_peak_49746 chr7 153215742 153216009 + 18.18293 NA Intergenic MIR|SINE|MIR -106556 NR_125776 103724390 Hs.614280 NR_125776 LINC01287 TCONS_l2_00027522 long intergenic non-protein coding RNA 1287 ncRNA 13-PTNLD9-TUMOR_peak_11285 chr11 114287206 114287417 + 18.17780 NA Intergenic MLT2F|LTR|ERVL -16039 NM_001271562 54494 Hs.715083 NM_019021 HPRD:07874 C11orf71 - chromosome 11 open reading frame 71 protein-coding 13-PTNLD9-TUMOR_peak_52097 chr8 131671746 131671938 + 18.17780 NA Intergenic Intergenic -215936 NM_018482 50807 Hs.655552 NM_018482 HPRD:05809 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 13-PTNLD9-TUMOR_peak_39509 chr4 143641137 143641291 + 18.17780 NA intron (NM_003866, intron 2 of 26) intron (NM_003866, intron 2 of 26) 126390 NM_003866 8821 Hs.531403 NM_003866 HPRD:06322 INPP4B - inositol polyphosphate-4-phosphatase, type II, 105kDa protein-coding 13-PTNLD9-TUMOR_peak_38478 chr4 58271579 58271885 + 18.17780 NA Intergenic Intergenic -295181 NM_001253835 3490 Hs.479808 NM_001553 HPRD:04183 IGFBP7 AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF insulin-like growth factor binding protein 7 protein-coding 13-PTNLD9-TUMOR_peak_51727 chr8 119974193 119974433 + 18.17701 NA Intergenic Intergenic -9930 NM_002546 4982 Hs.81791 NM_002546 HPRD:04032 TNFRSF11B OCIF|OPG|TR1 tumor necrosis factor receptor superfamily, member 11b protein-coding 13-PTNLD9-TUMOR_peak_2419 chr1 90228646 90228806 + 18.17701 NA Intergenic Intergenic -57847 NM_001134479 55144 Hs.482087 NM_018103 HPRD:11287 LRRC8D LRRC5 leucine rich repeat containing 8 family, member D protein-coding 13-PTNLD9-TUMOR_peak_3659 chr1 151974092 151974336 + 18.17648 NA Intergenic Intergenic -7500 NM_002966 6281 Hs.143873 NM_002966 HPRD:00232 S100A10 42C|ANX2L|ANX2LG|CAL1L|CLP11|Ca[1]|GP11|P11|p10 S100 calcium binding protein A10 protein-coding 13-PTNLD9-TUMOR_peak_1245 chr1 39644281 39644497 + 18.16399 NA intron (NM_012090, intron 1 of 92) intron (NM_012090, intron 1 of 92) 94550 NM_012090 23499 Hs.472475 NM_012090 HPRD:09750 MACF1 ABP620|ACF7|MACF|OFC4 microtubule-actin crosslinking factor 1 protein-coding 13-PTNLD9-TUMOR_peak_28105 chr2 113402054 113402333 + 18.16399 NA promoter-TSS (NR_033871) promoter-TSS (NR_033871) -436 NR_033871 400999 Hs.585221 NR_033871 FLJ42351 - uncharacterized LOC400999 ncRNA 13-PTNLD9-TUMOR_peak_19411 chr16 56659455 56659786 + 18.16399 NA promoter-TSS (NM_175617) promoter-TSS (NM_175617) 35 NM_175617 4493 Hs.744893 NM_175617 MT1E MT1|MTD metallothionein 1E protein-coding 13-PTNLD9-TUMOR_peak_17591 chr15 71587746 71588033 + 18.16399 NA intron (NM_024817, intron 5 of 16) MIR3|SINE|MIR -106491 NR_120350 101929196 Hs.680472 NR_120348 LOC101929196 - uncharacterized LOC101929196 ncRNA 13-PTNLD9-TUMOR_peak_13075 chr12 59207927 59208154 + 18.16399 NA Intergenic Intergenic -32542 NR_120452 101927653 Hs.130744 NR_120452 LOC101927653 - uncharacterized LOC101927653 ncRNA 13-PTNLD9-TUMOR_peak_16141 chr14 69472469 69472809 + 18.16399 NA Intergenic Intergenic 26240 NR_073422 161159 Hs.603341 NR_073422 ENSG00000259062 ACTN1-AS1 C14orf84 ACTN1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_18340 chr16 4009135 4009428 + 18.16399 NA Intergenic AluJb|SINE|Alu -8836 NR_120311 102724927 Hs.364739 NR_120311 LOC102724927 - uncharacterized LOC102724927 ncRNA 13-PTNLD9-TUMOR_peak_3900 chr1 155973205 155973448 + 18.16115 NA Intergenic Intergenic 17432 NM_003145 6746 Hs.74564 NM_003145 HPRD:02923 SSR2 TLAP|TRAP-BETA|TRAPB signal sequence receptor, beta (translocon-associated protein beta) protein-coding 13-PTNLD9-TUMOR_peak_21001 chr17 38254474 38254686 + 18.16115 NA intron (NM_021724, intron 1 of 7) intron (NM_021724, intron 1 of 7) 2398 NM_021724 9572 Hs.724 NM_021724 HPRD:03873 NR1D1 EAR1|THRA1|THRAL|ear-1|hRev nuclear receptor subfamily 1, group D, member 1 protein-coding 13-PTNLD9-TUMOR_peak_40352 chr5 13567926 13568262 + 18.15321 NA Intergenic MLT1F2|LTR|ERVL-MaLR 376495 NM_001369 1767 Hs.212360 NM_001369 HPRD:04514 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein, axonemal, heavy chain 5 protein-coding 13-PTNLD9-TUMOR_peak_31137 chr20 43125722 43125936 + 18.14906 NA intron (NM_198941, intron 10 of 10) intron (NM_198941, intron 10 of 10) 21303 NM_024331 79183 Hs.283869 NM_024331 HPRD:09837 TTPAL C20orf121 tocopherol (alpha) transfer protein-like protein-coding 13-PTNLD9-TUMOR_peak_50367 chr8 24013711 24014095 + 18.14906 NA Intergenic Intergenic -137677 NM_021777 10863 Hs.174030 NM_014265 HPRD:08391 ADAM28 ADAM 28|ADAM23|MDC-L|MDC-Lm|MDC-Ls|MDCL|eMDC II|eMDCII ADAM metallopeptidase domain 28 protein-coding 13-PTNLD9-TUMOR_peak_44280 chr6 27020249 27020415 + 18.14906 NA Intergenic LTR2B|LTR|ERV1 -32247 NR_026776 100270746 Hs.590428 NR_026776 LOC100270746 - uncharacterized LOC100270746 ncRNA 13-PTNLD9-TUMOR_peak_26773 chr2 45411768 45412054 + 18.14906 NA intron (NR_033831, intron 4 of 5) intron (NR_033831, intron 4 of 5) 70169 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 13-PTNLD9-TUMOR_peak_43850 chr6 13398342 13398569 + 18.14300 NA intron (NM_018988, intron 1 of 1) MIRb|SINE|MIR 9914 NM_001242630 54438 Hs.484686 NM_018988 HPRD:13574 GFOD1 ADG-90|C6orf114 glucose-fructose oxidoreductase domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_5472 chr1 222060130 222060389 + 18.13192 NA Intergenic Intergenic -144741 NM_007207 11221 Hs.497822 NM_007207 HPRD:12320 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 13-PTNLD9-TUMOR_peak_25977 chr2 3622769 3623069 + 18.13042 NA promoter-TSS (NM_001011) promoter-TSS (NM_001011) 66 NM_001011 6201 Hs.534346 NM_001011 HPRD:04712 RPS7 DBA8|S7 ribosomal protein S7 protein-coding 13-PTNLD9-TUMOR_peak_4940 chr1 201265122 201265300 + 18.13042 NA intron (NM_001005337, intron 2 of 13) intron (NM_001005337, intron 2 of 13) 12631 NM_000299 5317 Hs.497350 NM_000299 HPRD:03579 PKP1 B6P plakophilin 1 protein-coding 13-PTNLD9-TUMOR_peak_3726 chr1 153545041 153545441 + 18.12868 NA Intergenic Intergenic -6935 NM_005978 6273 Hs.516484 NM_005978 HPRD:01508 S100A2 CAN19|S100L S100 calcium binding protein A2 protein-coding 13-PTNLD9-TUMOR_peak_39383 chr4 137848340 137848600 + 18.11803 NA Intergenic Intergenic 605182 NM_019035 54510 Hs.591691 NM_019035 HPRD:12205 PCDH18 PCDH68L protocadherin 18 protein-coding 13-PTNLD9-TUMOR_peak_16827 chr15 26095400 26095754 + 18.11803 NA intron (NM_024490, intron 1 of 20) intron (NM_024490, intron 1 of 20) -1605 NR_039865 100616474 NR_039865 MIR4715 - microRNA 4715 ncRNA 13-PTNLD9-TUMOR_peak_5096 chr1 203520767 203521047 + 18.11803 NA Intergenic MER4D|LTR|ERV1 57636 NM_014359 26254 Hs.632468 NM_014359 HPRD:05498 OPTC OPT opticin protein-coding 13-PTNLD9-TUMOR_peak_23964 chr19 10962899 10963085 + 18.11803 NA intron (NM_001136482, intron 2 of 6) intron (NM_001136482, intron 2 of 6) 3886 NM_001136482 255809 Hs.440535 NM_001136482 ENSG00000214212 C19orf38 HIDE1 chromosome 19 open reading frame 38 protein-coding 13-PTNLD9-TUMOR_peak_50986 chr8 56819372 56819694 + 18.11803 NA intron (NM_001111097, intron 1 of 12) L1ME2|LINE|L1 27147 NM_002350 4067 Hs.491767 NM_002350 HPRD:01301 LYN JTK8|p53Lyn|p56Lyn LYN proto-oncogene, Src family tyrosine kinase protein-coding 13-PTNLD9-TUMOR_peak_47906 chr7 73356163 73356542 + 18.10934 NA Intergenic L1M4b|LINE|L1 80863 NM_182504 135886 Hs.647026 NM_182504 HPRD:15662 WBSCR28 - Williams-Beuren syndrome chromosome region 28 protein-coding 13-PTNLD9-TUMOR_peak_20140 chr16 89647717 89647969 + 18.10934 NA intron (NM_014427, intron 3 of 16) L1ME2|LINE|L1 5667 NM_153636 27132 Hs.461775 NM_014427 HPRD:05749 CPNE7 - copine VII protein-coding 13-PTNLD9-TUMOR_peak_5625 chr1 226063044 226063431 + 18.10934 NA intron (NM_014698, intron 3 of 24) intron (NM_014698, intron 3 of 24) 7183 NM_014698 9725 Hs.119387 NM_014698 HPRD:13817 TMEM63A KIAA0792 transmembrane protein 63A protein-coding 13-PTNLD9-TUMOR_peak_10472 chr11 70005739 70006105 + 18.10934 NA intron (NR_030691, intron 14 of 24) intron (NR_030691, intron 14 of 24) -43347 NM_003824 8772 Hs.86131 NM_003824 HPRD:03909 FADD MORT1 Fas (TNFRSF6)-associated via death domain protein-coding 13-PTNLD9-TUMOR_peak_27711 chr2 96728953 96729161 + 18.10277 NA Intergenic Intergenic -28330 NM_207328 150763 Hs.348629 NM_207328 HPRD:14089 GPAT2 CT123 glycerol-3-phosphate acyltransferase 2, mitochondrial protein-coding 13-PTNLD9-TUMOR_peak_15906 chr14 59213062 59213304 + 18.10128 NA Intergenic Intergenic -81823 NR_110547 102723742 Hs.232734 NR_110547 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 13-PTNLD9-TUMOR_peak_6455 chr10 10914071 10914314 + 18.10128 NA Intergenic Intergenic -77315 NR_027082 207107 Hs.31562 NR_027082 ENSG00000225383 SFTA1P SFTPF surfactant associated 1, pseudogene pseudo 13-PTNLD9-TUMOR_peak_6330 chr10 4005322 4005825 + 18.10128 NA Intergenic Intergenic -27779 NR_106726 102464829 NR_106726 MIR6078 hsa-mir-6078 microRNA 6078 ncRNA 13-PTNLD9-TUMOR_peak_48773 chr7 106598297 106598467 + 18.10128 NA Intergenic Intergenic -86796 NM_002736 5577 Hs.433068 NM_002736 HPRD:01486 PRKAR2B PRKAR2|RII-BETA protein kinase, cAMP-dependent, regulatory, type II, beta protein-coding 13-PTNLD9-TUMOR_peak_10429 chr11 68934117 68934299 + 18.10128 NA intron (NR_104161, intron 2 of 2) intron (NR_104161, intron 2 of 2) 4822 NR_104161 338694 Hs.564235 NR_104161 ENSG00000261070 LOC338694 - uncharacterized LOC338694 ncRNA 13-PTNLD9-TUMOR_peak_8671 chr10 134716358 134716705 + 18.10128 NA intron (NM_001200049, intron 22 of 57) intron (NM_001200049, intron 22 of 57) 39558 NM_001200049 54777 Hs.298038 NM_017609 HPRD:12596 CFAP46 C10orf123|C10orf124|C10orf92|C10orf93|TTC40|bA288G11.4|bA288G11.5|bB137A17.2|bB137A17.3 cilia and flagella associated protein 46 protein-coding 13-PTNLD9-TUMOR_peak_43031 chr5 172160634 172160914 + 18.09607 NA Intergenic Intergenic -21732 NM_001287812 101928093 Hs.646902 NM_001287812 LOC101928093 - uncharacterized LOC101928093 protein-coding 13-PTNLD9-TUMOR_peak_4123 chr1 161053155 161053566 + 18.09607 NA intron (NM_030916, intron 1 of 8) intron (NM_030916, intron 1 of 8) 6025 NM_030916 81607 Hs.492490 NM_030916 HPRD:17934 PVRL4 EDSS1|LNIR|PRR4|nectin-4 poliovirus receptor-related 4 protein-coding 13-PTNLD9-TUMOR_peak_23867 chr19 9046239 9046487 + 18.08782 NA exon (NM_024690, exon 5 of 84) exon (NM_024690, exon 5 of 84) 45655 NM_024690 94025 Hs.432676 NM_024690 ENSG00000181143 MUC16 CA125 mucin 16, cell surface associated protein-coding 13-PTNLD9-TUMOR_peak_6638 chr10 21625848 21626010 + 18.08782 NA Intergenic Intergenic 159641 NR_031736 100302129 NR_031736 MIR1915 MIRN1915|hsa-mir-1915 microRNA 1915 ncRNA 13-PTNLD9-TUMOR_peak_53382 chr9 46978714 46979111 + 18.08782 NA Intergenic Intergenic 215121 NR_046203 643648 Hs.640178 NR_046203 LINC01189 - long intergenic non-protein coding RNA 1189 ncRNA 13-PTNLD9-TUMOR_peak_7488 chr10 63388657 63388898 + 18.07894 NA Intergenic Intergenic -33942 NM_173554 219621 Hs.673160 NM_173554 HPRD:12559 C10orf107 bA63A2.1 chromosome 10 open reading frame 107 protein-coding 13-PTNLD9-TUMOR_peak_11121 chr11 107690163 107690381 + 18.07894 NA intron (NM_017515, intron 1 of 7) intron (NM_017515, intron 1 of 7) 39642 NM_017515 54733 Hs.524014 NM_017515 HPRD:15377 SLC35F2 HSNOV1 solute carrier family 35, member F2 protein-coding 13-PTNLD9-TUMOR_peak_18036 chr15 96972011 96972311 + 18.07894 NA Intergenic Eulor5A|DNA?|DNA? 95592 NM_001145157 7026 Hs.347991 NM_021005 HPRD:00139 NR2F2 ARP1|CHTD4|COUPTFB|COUPTFII|NF-E3|NR2F1|SVP40|TFCOUP2 nuclear receptor subfamily 2, group F, member 2 protein-coding 13-PTNLD9-TUMOR_peak_15989 chr14 63641601 63641887 + 18.07781 NA Intergenic Intergenic -29358 NM_020663 57381 Hs.656339 NM_020663 HPRD:09632 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 13-PTNLD9-TUMOR_peak_48568 chr7 100761701 100761951 + 18.07478 NA Intergenic Intergenic -8544 NM_000602 5054 Hs.414795 NM_000602 HPRD:01418 SERPINE1 PAI|PAI-1|PAI1|PLANH1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 protein-coding 13-PTNLD9-TUMOR_peak_52476 chr8 145010690 145010959 + 18.07240 NA intron (NM_201383, intron 5 of 31) intron (NM_201383, intron 5 of 31) 2934 NM_201384 5339 Hs.434248 NM_000445 HPRD:03180 PLEC EBS1|EBSO|HD1|LGMD2Q|PCN|PLEC1|PLEC1b|PLTN plectin protein-coding 13-PTNLD9-TUMOR_peak_8481 chr10 122838177 122838640 + 18.06614 NA Intergenic Intergenic -227717 NR_033850 283089 Hs.568750 NR_033850 ENSG00000227165 WDR11-AS1 - WDR11 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_14437 chr13 24722874 24723276 + 18.06614 NA intron (NM_001286792, intron 3 of 14) intron (NM_001286792, intron 3 of 14) -11780 NM_001166271 221178 Hs.434298 NM_153023 HPRD:15427 SPATA13 ARHGEF29|ASEF2 spermatogenesis associated 13 protein-coding 13-PTNLD9-TUMOR_peak_48345 chr7 94209975 94210162 + 18.06614 NA Intergenic Intergenic 70898 NM_022900 64921 Hs.260041 NM_022900 HPRD:13004 CASD1 C7orf12|NBLA04196 CAS1 domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_53042 chr9 33452954 33453248 + 18.05926 NA Intergenic Intergenic -5470 NM_004925 360 Hs.234642 NM_004925 HPRD:08970 AQP3 AQP-3|GIL aquaporin 3 (Gill blood group) protein-coding 13-PTNLD9-TUMOR_peak_16163 chr14 70046782 70046963 + 18.05926 NA Intergenic MER58A|DNA|hAT-Charlie -5272 NM_001271507 56936 Hs.458319 NM_020181 CCDC177 C14orf162|PLPL coiled-coil domain containing 177 protein-coding 13-PTNLD9-TUMOR_peak_26100 chr2 10564220 10564514 + 18.05926 NA intron (NM_001258357, intron 4 of 4) intron (NM_001258357, intron 4 of 4) 22608 NR_028374 100302743 Hs.730525 NR_028374 ENSG00000206633 SNORA80B ACA67B small nucleolar RNA, H/ACA box 80B snoRNA 13-PTNLD9-TUMOR_peak_31146 chr20 43349345 43349569 + 18.05926 NA intron (NM_003881, intron 2 of 3) intron (NM_003881, intron 2 of 3) 5572 NM_003881 8839 Hs.592145 NM_003881 HPRD:16020 WISP2 CCN5|CT58|CTGF-L WNT1 inducible signaling pathway protein 2 protein-coding 13-PTNLD9-TUMOR_peak_35750 chr3 126738416 126738581 + 18.05526 NA intron (NM_032242, intron 19 of 30) intron (NM_032242, intron 19 of 30) 31061 NM_032242 5361 Hs.432329 NM_032242 HPRD:11868 PLXNA1 NOV|NOVP|PLEXIN-A1|PLXN1 plexin A1 protein-coding 13-PTNLD9-TUMOR_peak_6360 chr10 5508419 5508796 + 18.05526 NA Intergenic Intergenic 20093 NR_073040 10276 Hs.25155 NM_005863 HPRD:07342 NET1 ARHGEF8|NET1A neuroepithelial cell transforming 1 protein-coding 13-PTNLD9-TUMOR_peak_53636 chr9 75172545 75172812 + 18.05526 NA intron (NM_138691, intron 1 of 23) intron (NM_138691, intron 1 of 23) 35961 NM_138691 117531 Hs.670211 NM_138691 HPRD:05988 TMC1 DFNA36|DFNB11|DFNB7 transmembrane channel-like 1 protein-coding 13-PTNLD9-TUMOR_peak_41771 chr5 112825114 112825388 + 18.05526 NA promoter-TSS (NM_001085377) promoter-TSS (NM_001085377) -724 NM_001085377 4163 Hs.593171 NM_002387 HPRD:01157 MCC MCC1 mutated in colorectal cancers protein-coding 13-PTNLD9-TUMOR_peak_26396 chr2 27669052 27669255 + 18.05526 NA exon (NM_015662, exon 43 of 48) exon (NM_015662, exon 43 of 48) 3920 NM_173853 200634 Hs.59509 NM_173853 HPRD:17254 KRTCAP3 KCP3|MRV222|PRO9898 keratinocyte associated protein 3 protein-coding 13-PTNLD9-TUMOR_peak_28087 chr2 112908073 112908430 + 18.05526 NA intron (NM_153214, intron 1 of 7) MIR|SINE|MIR 12289 NM_153214 129804 Hs.437696 NM_153214 HPRD:08783 FBLN7 TM14 fibulin 7 protein-coding 13-PTNLD9-TUMOR_peak_9130 chr11 13237686 13237879 + 18.05235 NA Intergenic Intergenic -61492 NM_001030273 406 Hs.65734 NM_001178 HPRD:03973 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator-like protein-coding 13-PTNLD9-TUMOR_peak_27450 chr2 85932814 85933009 + 18.05235 NA Intergenic Charlie13a|DNA|hAT-Charlie 11497 NM_006433 10578 Hs.105806 NM_006433 HPRD:01788 GNLY 519|D2S69E|LAG-2|LAG2|NKG5|TLA519 granulysin protein-coding 13-PTNLD9-TUMOR_peak_19957 chr16 84913543 84913772 + 18.04918 NA intron (NM_031476, intron 12 of 14) intron (NM_031476, intron 12 of 14) 60070 NM_031476 83716 Hs.513779 NM_031476 HPRD:13186 CRISPLD2 CRISP11|LCRISP2 cysteine-rich secretory protein LCCL domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_21495 chr17 49010929 49011136 + 18.04918 NA Intergenic Tigger3a|DNA|TcMar-Tigger -65693 NM_001243877 10140 Hs.703321 NM_005749 HPRD:09273 TOB1 APRO6|PIG49|TOB|TROB|TROB1 transducer of ERBB2, 1 protein-coding 13-PTNLD9-TUMOR_peak_25705 chr19 56060800 56061303 + 18.04918 NA Intergenic MIRb|SINE|MIR -4142 NM_001199824 100130827 Hs.712129 NM_001199824 ENSG00000231274 SBK3 SGK110 SH3 domain binding kinase family, member 3 protein-coding 13-PTNLD9-TUMOR_peak_9488 chr11 34074968 34075143 + 18.04423 NA intron (NM_005898, intron 2 of 18) intron (NM_005898, intron 2 of 18) 1825 NM_203364 4076 Hs.471818 NM_005898 HPRD:03108 CAPRIN1 GPIAP1|GPIP137|GRIP137|M11S1|RNG105|p137GPI cell cycle associated protein 1 protein-coding 13-PTNLD9-TUMOR_peak_19870 chr16 81177507 81178116 + 18.02631 NA intron (NM_052892, intron 30 of 42) MIR|SINE|MIR 37156 NM_001278423 114780 Hs.413525 NM_052892 HPRD:06990 PKD1L2 PC1L2 polycystic kidney disease 1-like 2 protein-coding 13-PTNLD9-TUMOR_peak_12809 chr12 52557812 52558014 + 18.02425 NA Intergenic Intergenic 27871 NM_182507 144501 Hs.140978 NM_182507 HPRD:14068 KRT80 KB20 keratin 80 protein-coding 13-PTNLD9-TUMOR_peak_9159 chr11 14206098 14206378 + 18.02425 NA intron (NM_006108, intron 6 of 15) intron (NM_006108, intron 6 of 15) 173793 NM_001177315 22800 Hs.502004 NM_012250 HPRD:02518 RRAS2 TC21 related RAS viral (r-ras) oncogene homolog 2 protein-coding 13-PTNLD9-TUMOR_peak_10444 chr11 69251867 69252119 + 18.02425 NA Intergenic Intergenic -48336 NR_120543 101928292 Hs.736219 NR_120542 LINC01488 - long intergenic non-protein coding RNA 1488 ncRNA 13-PTNLD9-TUMOR_peak_6602 chr10 18212732 18212885 + 18.02425 NA Intergenic Intergenic -27960 NM_001145195 221074 Hs.350895 NM_152725 HPRD:15384 SLC39A12 LZT-Hs8|ZIP-12|bA570F3.1 solute carrier family 39 (zinc transporter), member 12 protein-coding 13-PTNLD9-TUMOR_peak_14625 chr13 40677057 40677311 + 18.02425 NA Intergenic Intergenic -78762 NR_046870 100874127 Hs.578028 NR_046870 ENSG00000230710 LINC00332 NCRNA00332 long intergenic non-protein coding RNA 332 ncRNA 13-PTNLD9-TUMOR_peak_36568 chr3 159451326 159451513 + 18.00910 NA intron (NM_001197108, intron 1 of 6) intron (NM_001197108, intron 1 of 6) 34982 NR_121669 100874433 Hs.601476 NR_121669 IQCJ-SCHIP1-AS1 uaz98 IQCJ-SCHIP1 readthrough antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_37130 chr3 187779038 187779293 + 18.00910 NA Intergenic Intergenic -92496 NM_001167672 4026 Hs.720220 NM_005578 HPRD:02828 LPP - LIM domain containing preferred translocation partner in lipoma protein-coding 13-PTNLD9-TUMOR_peak_32576 chr21 46806293 46806529 + 18.00910 NA Intergenic Intergenic -18686 NM_130445 80781 Hs.517356 NM_030582 HPRD:00382 COL18A1 KNO|KNO1|KS collagen, type XVIII, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_49205 chr7 134626049 134626218 + 18.00910 NA intron (NM_033140, intron 4 of 11) intron (NM_033140, intron 4 of 11) -45126 NM_178563 340351 Hs.648616 NM_178563 HPRD:14175 AGBL3 CCP3 ATP/GTP binding protein-like 3 protein-coding 13-PTNLD9-TUMOR_peak_18511 chr16 11227316 11227496 + 18.00910 NA intron (NM_015226, intron 21 of 22) intron (NM_015226, intron 21 of 22) 122633 NM_003745 8651 Hs.50640 NM_003745 HPRD:04669 SOCS1 CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP3 suppressor of cytokine signaling 1 protein-coding 13-PTNLD9-TUMOR_peak_6533 chr10 13924141 13924515 + 18.00246 NA intron (NM_018027, intron 2 of 24) intron (NM_018027, intron 2 of 24) -191955 NR_120638 101928453 Hs.650212 NR_120638 LOC101928453 - uncharacterized LOC101928453 ncRNA 13-PTNLD9-TUMOR_peak_31410 chr20 48760979 48761285 + 18.00246 NA intron (NM_199129, intron 1 of 5) L1MC4a|LINE|L1 9203 NM_001162505 387521 Hs.744839 NM_199129 HPRD:17257 TMEM189 KUA transmembrane protein 189 protein-coding 13-PTNLD9-TUMOR_peak_36202 chr3 141179029 141179210 + 18.00246 NA Intergenic Intergenic -26807 NM_006506 5922 Hs.98445 NM_006506 ENSG00000155903 RASA2 GAP1M RAS p21 protein activator 2 protein-coding 13-PTNLD9-TUMOR_peak_34924 chr3 69819386 69819610 + 18.00246 NA intron (NM_006722, intron 1 of 9) intron (NM_006722, intron 1 of 9) 6536 NM_006722 4286 Hs.166017 NM_000248 HPRD:01138 MITF CMM8|MI|WS2|WS2A|bHLHe32 microphthalmia-associated transcription factor protein-coding 13-PTNLD9-TUMOR_peak_31534 chr20 51649321 51649456 + 18.00246 NA intron (NM_173485, intron 1 of 2) MIR|SINE|MIR 60442 NM_173485 128553 Hs.473117 NM_173485 HPRD:10730 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 13-PTNLD9-TUMOR_peak_28293 chr2 121561526 121561899 + 18.00246 NA intron (NM_005270, intron 1 of 12) intron (NM_005270, intron 1 of 12) 6845 NM_005270 2736 Hs.111867 NM_005270 HPRD:01312 GLI2 HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 13-PTNLD9-TUMOR_peak_16835 chr15 26273620 26273812 + 18.00246 NA intron (NR_040082, intron 2 of 4) intron (NR_040082, intron 2 of 4) -87244 NR_038851 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 13-PTNLD9-TUMOR_peak_22152 chr17 76285926 76286102 + 18.00246 NA Intergenic Intergenic -11441 NR_073178 100996291 Hs.744493 NR_073178 ENSG00000204277 LOC100996291 - uncharacterized LOC100996291 ncRNA 13-PTNLD9-TUMOR_peak_52812 chr9 16445649 16445870 + 18.00246 NA intron (NM_017637, intron 5 of 6) intron (NM_017637, intron 5 of 6) -169448 NR_073471 100129385 Hs.586441 NM_001271829 ENSG00000205549 C9orf92 Em:AL513424.1 chromosome 9 open reading frame 92 protein-coding 13-PTNLD9-TUMOR_peak_12178 chr12 12957558 12957782 + 18.00179 NA Intergenic Intergenic -8610 NM_016355 51202 Hs.719938 NM_016355 HPRD:10863 DDX47 E4-DBP|HQ0256|MSTP162|RRP3 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 protein-coding 13-PTNLD9-TUMOR_peak_2464 chr1 92295851 92296158 + 18.00179 NA intron (NR_036634, intron 2 of 17) intron (NR_036634, intron 2 of 17) 55832 NM_003243 7049 Hs.482390 NM_003243 HPRD:02846 TGFBR3 BGCAN|betaglycan transforming growth factor, beta receptor III protein-coding 13-PTNLD9-TUMOR_peak_13826 chr12 110782984 110783395 + 18.00164 NA intron (NM_170665, intron 18 of 19) intron (NM_170665, intron 18 of 19) 58346 NM_001137664 51434 Hs.719935 NM_016238 HPRD:16233 ANAPC7 APC7 anaphase promoting complex subunit 7 protein-coding 13-PTNLD9-TUMOR_peak_30759 chr20 30655140 30655637 + 18.00164 NA intron (NM_001172132, intron 2 of 13) intron (NM_001172132, intron 2 of 13) 15397 NM_001172133 3055 Hs.655210 NM_002110 HPRD:00796 HCK JTK9|p59Hck|p61Hck HCK proto-oncogene, Src family tyrosine kinase protein-coding 13-PTNLD9-TUMOR_peak_43648 chr6 6752459 6752662 + 18.00164 NA Intergenic Intergenic -129501 NR_026970 285780 Hs.655737 NM_173675 HPRD:08165 LY86-AS1 LY86-AS|LY86AS LY86 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_41994 chr5 130233259 130233742 + 18.00164 NA Intergenic L1PA3|LINE|L1 267541 NR_073488 3094 Hs.483305 NM_005340 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_43542 chr6 3612595 3612818 + 18.00164 NA Intergenic L2c|LINE|L2 139540 NM_183373 221749 Hs.484500 NM_183373 HPRD:12854 PXDC1 C6orf145 PX domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_7522 chr10 64996293 64996430 + 18.00164 NA intron (NM_001282948, intron 2 of 24) intron (NM_001282948, intron 2 of 24) 32622 NM_001282948 221037 Hs.413416 NM_004241 HPRD:05141 JMJD1C TRIP8 jumonji domain containing 1C protein-coding 13-PTNLD9-TUMOR_peak_45232 chr6 47156310 47156673 + 18.00164 NA Intergenic Intergenic 121192 NM_014452 27242 Hs.443577 NM_014452 HPRD:05759 TNFRSF21 BM-018|CD358|DR6 tumor necrosis factor receptor superfamily, member 21 protein-coding 13-PTNLD9-TUMOR_peak_27767 chr2 98235746 98235936 + 18.00164 NA Intergenic Intergenic -26680 NM_001862 1329 Hs.1342 NM_001862 COX5B COXVB cytochrome c oxidase subunit Vb protein-coding 13-PTNLD9-TUMOR_peak_53979 chr9 93955316 93955610 + 17.99595 NA Intergenic Intergenic -118049 NR_033912 100129316 Hs.458154 NR_033912 LOC100129316 - uncharacterized LOC100129316 ncRNA 13-PTNLD9-TUMOR_peak_4976 chr1 201683783 201684061 + 17.96021 NA intron (NM_020443, intron 2 of 29) intron (NM_020443, intron 2 of 29) -4714 NR_049823 100847050 NR_049823 MIR5191 - microRNA 5191 ncRNA 13-PTNLD9-TUMOR_peak_31681 chr20 56193223 56193481 + 17.95359 NA intron (NM_001160417, intron 1 of 7) intron (NM_001160417, intron 1 of 7) 2280 NM_001160419 81030 Hs.302123 NM_030776 HPRD:09484 ZBP1 C20orf183|DAI|DLM-1|DLM1 Z-DNA binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_31770 chr20 61060131 61060479 + 17.95359 NA Intergenic Intergenic -9279 NM_080473 140628 Hs.352250 NM_080473 HPRD:17029 GATA5 GATAS|bB379O24.1 GATA binding protein 5 protein-coding 13-PTNLD9-TUMOR_peak_1882 chr1 55487763 55487972 + 17.95175 NA Intergenic Intergenic -17282 NM_174936 255738 Hs.18844 NM_174936 HPRD:07080 PCSK9 FH3|HCHOLA3|LDLCQ1|NARC-1|NARC1|PC9 proprotein convertase subtilisin/kexin type 9 protein-coding 13-PTNLD9-TUMOR_peak_28855 chr2 159992630 159992872 + 17.95175 NA exon (NM_033394, exon 5 of 27) exon (NM_033394, exon 5 of 27) -50595 NR_106948 102465535 NR_106948 MIR6888 hsa-mir-6888 microRNA 6888 ncRNA 13-PTNLD9-TUMOR_peak_53644 chr9 75768777 75769189 + 17.94831 NA intron (NM_000700, intron 1 of 12) L2c|LINE|L2 2202 NM_000700 301 Hs.494173 NM_000700 HPRD:01060 ANXA1 ANX1|LPC1 annexin A1 protein-coding 13-PTNLD9-TUMOR_peak_9223 chr11 17909501 17909739 + 17.94795 NA intron (NR_104041, intron 8 of 9) Charlie3|DNA|hAT-Charlie 125089 NM_012139 26297 Hs.32470 NM_012139 HPRD:06926 SERGEF DELGEF|Gnefr secretion regulating guanine nucleotide exchange factor protein-coding 13-PTNLD9-TUMOR_peak_27140 chr2 67799317 67799514 + 17.94795 NA Intergenic Intergenic 174973 NM_019002 54465 Hs.353022 NM_019002 HPRD:13282 ETAA1 ETAA16 Ewing tumor-associated antigen 1 protein-coding 13-PTNLD9-TUMOR_peak_45425 chr6 64237589 64237857 + 17.94795 NA Intergenic Intergenic -44194 NM_003463 7803 Hs.227777 NM_003463 HPRD:03349 PTP4A1 HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1 protein tyrosine phosphatase type IVA, member 1 protein-coding 13-PTNLD9-TUMOR_peak_30828 chr20 32923479 32923843 + 17.94762 NA Intergenic Intergenic -24053 NM_001161766 191 Hs.388004 NM_000687 HPRD:01621 AHCY SAHH|adoHcyase adenosylhomocysteinase protein-coding 13-PTNLD9-TUMOR_peak_49668 chr7 151182582 151182756 + 17.94762 NA intron (NM_005614, intron 2 of 7) intron (NM_005614, intron 2 of 7) 34341 NM_005614 6009 Hs.283521 NM_005614 HPRD:03188 RHEB RHEB2 Ras homolog enriched in brain protein-coding 13-PTNLD9-TUMOR_peak_36706 chr3 170773558 170773835 + 17.94762 NA Intergenic L2a|LINE|L2 -28928 NM_000340 6514 Hs.167584 NM_000340 HPRD:00685 SLC2A2 GLUT2 solute carrier family 2 (facilitated glucose transporter), member 2 protein-coding 13-PTNLD9-TUMOR_peak_40689 chr5 40385676 40386019 + 17.94310 NA Intergenic Intergenic -294185 NM_000958 5734 Hs.199248 NM_000958 HPRD:03350 PTGER4 EP4|EP4R prostaglandin E receptor 4 (subtype EP4) protein-coding 13-PTNLD9-TUMOR_peak_22833 chr18 24197226 24197407 + 17.94310 NA intron (NM_001258222, intron 1 of 4) intron (NM_001258222, intron 1 of 4) 22992 NM_198991 284252 Hs.526630 NM_198991 HPRD:11059 KCTD1 C18orf5|SENS potassium channel tetramerization domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_12354 chr12 26472512 26472841 + 17.94310 NA Intergenic Intergenic 124170 NM_005086 8082 Hs.183428 NM_005086 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 13-PTNLD9-TUMOR_peak_6359 chr10 5491909 5492076 + 17.94310 NA intron (NR_073040, intron 1 of 9) intron (NR_073040, intron 1 of 9) 3478 NR_073040 10276 Hs.25155 NM_005863 HPRD:07342 NET1 ARHGEF8|NET1A neuroepithelial cell transforming 1 protein-coding 13-PTNLD9-TUMOR_peak_2944 chr1 115323011 115323395 + 17.94310 NA exon (NM_025073, exon 1 of 5) exon (NM_025073, exon 1 of 5) 105 NM_025073 80143 Hs.709277 NM_025073 HPRD:07958 SIKE1 SIKE suppressor of IKBKE 1 protein-coding 13-PTNLD9-TUMOR_peak_26665 chr2 39860095 39860296 + 17.94310 NA Intergenic Intergenic -32443 NM_001167959 130733 Hs.40808 NM_152390 HPRD:14577 TMEM178A TMEM178 transmembrane protein 178A protein-coding 13-PTNLD9-TUMOR_peak_4573 chr1 179112170 179112388 + 17.94310 NA promoter-TSS (NM_001136000) promoter-TSS (NM_001136000) -55 NM_001136000 27 Hs.159472 NM_005158 HPRD:01259 ABL2 ABLL|ARG ABL proto-oncogene 2, non-receptor tyrosine kinase protein-coding 13-PTNLD9-TUMOR_peak_14032 chr12 120686450 120686713 + 17.94094 NA intron (NM_001243756, intron 1 of 10) MIR|SINE|MIR 1383 NM_025157 5829 Hs.446336 NM_002859 ENSG00000089159 PXN - paxillin protein-coding 13-PTNLD9-TUMOR_peak_2547 chr1 94765696 94766082 + 17.94094 NA Intergenic Intergenic -62582 NM_004815 9411 Hs.483238 NM_004815 ARHGAP29 PARG1 Rho GTPase activating protein 29 protein-coding 13-PTNLD9-TUMOR_peak_37004 chr3 184495665 184495780 + 17.94094 NA Intergenic Intergenic -4779 NR_110043 101928992 Hs.507129 NR_110043 ENSG00000229433 LOC101928992 - uncharacterized LOC101928992 ncRNA 13-PTNLD9-TUMOR_peak_52275 chr8 139539548 139539715 + 17.94094 NA Intergenic Intergenic -30566 NM_015912 51059 Hs.126024 NM_015912 HPRD:14230 FAM135B C8ORFK32 family with sequence similarity 135, member B protein-coding 13-PTNLD9-TUMOR_peak_46368 chr6 155406800 155407216 + 17.94094 NA Intergenic Intergenic -4415 NM_012454 26230 Hs.586279 NM_012454 HPRD:05273 TIAM2 STEF|TIAM-2 T-cell lymphoma invasion and metastasis 2 protein-coding 13-PTNLD9-TUMOR_peak_21266 chr17 44487354 44487554 + 17.94094 NA intron (NR_033799, intron 3 of 6) intron (NR_033799, intron 3 of 6) 37275 NR_033799 728806 Hs.735097 NR_033799 NSFP1 NSFP N-ethylmaleimide-sensitive factor pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_12831 chr12 52721396 52721619 + 17.94094 NA Intergenic Intergenic -6325 NM_002282 3889 Hs.720768 NM_002282 HPRD:09097 KRT83 HB3|Hb-3|KRTHB3 keratin 83 protein-coding 13-PTNLD9-TUMOR_peak_1215 chr1 38686771 38687024 + 17.94049 NA Intergenic Intergenic -6458 NR_038928 339442 Hs.434245 NR_038928 ENSG00000237290 LINC01343 - long intergenic non-protein coding RNA 1343 ncRNA 13-PTNLD9-TUMOR_peak_14573 chr13 34208361 34208563 + 17.94049 NA intron (NM_001243476, intron 3 of 17) intron (NM_001243476, intron 3 of 17) 42510 NM_001243476 90627 Hs.156551 NM_052851 HPRD:11607 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR-related lipid transfer (START) domain containing 13 protein-coding 13-PTNLD9-TUMOR_peak_13270 chr12 69462327 69462543 + 17.94049 NA Intergenic Intergenic -105415 NM_001874 1368 Hs.654387 NM_001874 HPRD:00273 CPM - carboxypeptidase M protein-coding 13-PTNLD9-TUMOR_peak_28366 chr2 127955499 127955652 + 17.94049 NA intron (NM_001001665, intron 4 of 7) intron (NM_001001665, intron 4 of 7) 7768 NM_001001665 339761 Hs.407639 NM_001001665 HPRD:13360 CYP27C1 - cytochrome P450, family 27, subfamily C, polypeptide 1 protein-coding 13-PTNLD9-TUMOR_peak_23054 chr18 43830484 43830689 + 17.94049 NA intron (NM_145055, intron 3 of 4) L2b|LINE|L2 76598 NM_145055 147339 Hs.116486 NM_145055 HPRD:12690 C18orf25 ARKL1|RNF111L1 chromosome 18 open reading frame 25 protein-coding 13-PTNLD9-TUMOR_peak_21849 chr17 65634081 65634356 + 17.94049 NA intron (NM_181671, intron 6 of 9) intron (NM_181671, intron 6 of 9) -79843 NM_015462 25926 Hs.463936 NM_015462 HPRD:10900 NOL11 - nucleolar protein 11 protein-coding 13-PTNLD9-TUMOR_peak_37882 chr4 8343462 8343772 + 17.94049 NA Intergenic LTR18B|LTR|ERVL 72125 NM_053044 94031 Hs.479119 NM_053044 HPRD:08821 HTRA3 Prsp|Tasp HtrA serine peptidase 3 protein-coding 13-PTNLD9-TUMOR_peak_4767 chr1 185287068 185287263 + 17.94015 NA promoter-TSS (NM_006469) promoter-TSS (NM_006469) -704 NM_006469 10625 Hs.497183 NM_006469 HPRD:10004 IVNS1ABP FLARA3|HSPC068|KLHL39|ND1|NS-1|NS1-BP|NS1BP influenza virus NS1A binding protein protein-coding 13-PTNLD9-TUMOR_peak_4199 chr1 162869519 162869971 + 17.91219 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -31140 NM_178550 339512 Hs.407631 NM_178550 HPRD:14661 C1orf110 - chromosome 1 open reading frame 110 protein-coding 13-PTNLD9-TUMOR_peak_15774 chr14 53170099 53170289 + 17.91219 NA Intergenic MLT1F1|LTR|ERVL-MaLR -3702 NM_002806 5706 Hs.156171 NM_002806 HPRD:04086 PSMC6 CADP44|HEL-S-73|P44|SUG2|p42 proteasome (prosome, macropain) 26S subunit, ATPase, 6 protein-coding 13-PTNLD9-TUMOR_peak_35319 chr3 111314152 111314405 + 17.90970 NA promoter-TSS (NM_024508) promoter-TSS (NM_024508) -96 NM_024508 79413 Hs.136912 NM_024508 HPRD:15686 ZBED2 - zinc finger, BED-type containing 2 protein-coding 13-PTNLD9-TUMOR_peak_30124 chr2 238596375 238596656 + 17.90871 NA intron (NM_001137550, intron 1 of 23) intron (NM_001137550, intron 1 of 23) -4292 NM_004735 9208 Hs.471779 NM_004735 HPRD:04460 LRRFIP1 FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP leucine rich repeat (in FLII) interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_42178 chr5 135389412 135389577 + 17.90871 NA intron (NM_000358, intron 8 of 16) intron (NM_000358, intron 8 of 16) 24910 NM_000358 7045 Hs.369397 NM_000358 HPRD:03409 TGFBI BIGH3|CDB1|CDG2|CDGG1|CSD|CSD1|CSD2|CSD3|EBMD|LCD1 transforming growth factor, beta-induced, 68kDa protein-coding 13-PTNLD9-TUMOR_peak_25666 chr19 55658072 55658696 + 17.90871 NA exon (NM_001291774, exon 4 of 14) exon (NM_001291774, exon 4 of 14) 2338 NM_001126132 7138 Hs.631558 NM_003283 HPRD:01841 TNNT1 ANM|NEM5|STNT|TNT|TNTS troponin T type 1 (skeletal, slow) protein-coding 13-PTNLD9-TUMOR_peak_43073 chr5 173073048 173073427 + 17.90233 NA Intergenic MLT1N2|LTR|ERVL-MaLR -29571 NM_138369 91272 Hs.425091 NM_138369 HPRD:13309 BOD1 FAM44B biorientation of chromosomes in cell division 1 protein-coding 13-PTNLD9-TUMOR_peak_5797 chr1 230908276 230908480 + 17.90233 NA intron (NM_016452, intron 7 of 18) FRAM|SINE|Alu 25217 NM_016452 10753 Hs.498021 NM_006615 HPRD:05909 CAPN9 GC36|nCL-4 calpain 9 protein-coding 13-PTNLD9-TUMOR_peak_43075 chr5 173148616 173149046 + 17.89393 NA intron (NR_108027, intron 1 of 2) MIR3|SINE|MIR 24381 NR_108027 101928136 Hs.449267 NR_108027 LINC01484 - long intergenic non-protein coding RNA 1484 ncRNA 13-PTNLD9-TUMOR_peak_280 chr1 8403527 8404041 + 17.89393 NA intron (NM_001080397, intron 8 of 8) CpG 25639 NM_001080397 50651 Hs.463036 NM_001080397 ENSG00000162426 SLC45A1 DNB5 solute carrier family 45, member 1 protein-coding 13-PTNLD9-TUMOR_peak_2793 chr1 110420028 110420388 + 17.89393 NA Intergenic Intergenic -33025 NM_000757 1435 Hs.173894 NM_000757 HPRD:00388 CSF1 CSF-1|MCSF colony stimulating factor 1 (macrophage) protein-coding 13-PTNLD9-TUMOR_peak_12037 chr12 7167792 7168090 + 17.89393 NA promoter-TSS (NM_001734) promoter-TSS (NM_001734) -39 NM_001734 716 Hs.458355 NM_001734 HPRD:00397 C1S - complement component 1, s subcomponent protein-coding 13-PTNLD9-TUMOR_peak_47076 chr7 23799667 23799970 + 17.88508 NA intron (NR_048542, intron 10 of 23) intron (NR_048542, intron 10 of 23) 49873 NM_001260504 56164 Hs.309767 NM_031414 HPRD:10427 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 13-PTNLD9-TUMOR_peak_6831 chr10 30712411 30712641 + 17.88508 NA Intergenic Intergenic -10424 NM_001244134 1326 Hs.432453 NM_005204 HPRD:01863 MAP3K8 COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT mitogen-activated protein kinase kinase kinase 8 protein-coding 13-PTNLD9-TUMOR_peak_15508 chr14 34456057 34456328 + 17.88508 NA Intergenic MLT1J|LTR|ERVL-MaLR -35908 NM_022073 112399 Hs.135507 NM_022073 HPRD:06972 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia-inducible factor 3 protein-coding 13-PTNLD9-TUMOR_peak_39106 chr4 113739151 113739402 + 17.87691 NA promoter-TSS (NM_001127493) promoter-TSS (NM_001127493) 37 NM_001127493 287 Hs.620557 NM_001148 HPRD:00110 ANK2 ANK-2|LQT4|brank-2 ankyrin 2, neuronal protein-coding 13-PTNLD9-TUMOR_peak_38823 chr4 87898810 87899157 + 17.87691 NA intron (NM_001166693, intron 2 of 20) intron (NM_001166693, intron 2 of 20) -29170 NM_005935 4299 Hs.480190 NM_005935 HPRD:08871 AFF1 AF4|MLLT2|PBM1 AF4/FMR2 family, member 1 protein-coding 13-PTNLD9-TUMOR_peak_22732 chr18 19830613 19830996 + 17.87691 NA Intergenic Intergenic 81406 NM_005257 2627 Hs.514746 NM_005257 HPRD:09043 GATA6 - GATA binding protein 6 protein-coding 13-PTNLD9-TUMOR_peak_42023 chr5 131700983 131701261 + 17.87567 NA TTS (NR_037500) TTS (NR_037500) 169 NR_037500 100500865 NR_037500 miRBase:MI0016592 MIR3936 - microRNA 3936 ncRNA 13-PTNLD9-TUMOR_peak_13899 chr12 113478553 113478692 + 17.87250 NA Intergenic L2c|LINE|L2 -17040 NM_004416 1840 Hs.372152 NM_004416 HPRD:03991 DTX1 hDx-1 deltex 1, E3 ubiquitin ligase protein-coding 13-PTNLD9-TUMOR_peak_23067 chr18 44256469 44256617 + 17.87222 NA Intergenic Intergenic -19547 NM_144612 125336 Hs.345877 NM_144612 HPRD:08316 LOXHD1 DFNB77|LH2D1 lipoxygenase homology domains 1 protein-coding 13-PTNLD9-TUMOR_peak_32417 chr21 43528022 43528365 + 17.87215 NA intron (NM_001004416, intron 9 of 22) intron (NM_001004416, intron 9 of 22) 451 NR_027243 150147 Hs.558646 NM_152507 HPRD:10740 C21orf128 - chromosome 21 open reading frame 128 ncRNA 13-PTNLD9-TUMOR_peak_4322 chr1 168069912 168070130 + 17.87215 NA intron (NM_001267614, intron 1 of 4) intron (NM_001267614, intron 1 of 4) 35653 NM_001267612 23432 Hs.271809 NM_007369 HPRD:17070 GPR161 RE2 G protein-coupled receptor 161 protein-coding 13-PTNLD9-TUMOR_peak_30273 chr20 1796979 1797356 + 17.87215 NA Intergenic Intergenic -36775 NR_037142 100289473 Hs.641525 NR_037142 ENSG00000232528 LOC100289473 - cytoskeleton associated protein 2-like pseudogene pseudo 13-PTNLD9-TUMOR_peak_48433 chr7 98417495 98417738 + 17.87170 NA Intergenic L2|LINE|L2 50057 NM_001134451 222865 Hs.270753 NM_152913 HPRD:13226 TMEM130 - transmembrane protein 130 protein-coding 13-PTNLD9-TUMOR_peak_45087 chr6 43464112 43464305 + 17.86956 NA intron (NM_001146017, intron 1 of 9) intron (NM_001146017, intron 1 of 9) 6886 NM_001146017 93643 Hs.520145 NM_080604 HPRD:10269 TJAP1 PILT|TJP4 tight junction associated protein 1 (peripheral) protein-coding 13-PTNLD9-TUMOR_peak_1615 chr1 46648946 46649271 + 17.86680 NA intron (NM_005727, intron 3 of 8) intron (NM_005727, intron 3 of 8) 8359 NM_005727 10103 Hs.38972 NM_005727 HPRD:18232 TSPAN1 NET1|TM4C|TM4SF tetraspanin 1 protein-coding 13-PTNLD9-TUMOR_peak_13249 chr12 68314241 68314636 + 17.86290 NA Intergenic Intergenic -8577 NR_120456 101927922 Hs.450769 NR_120456 LINC01479 - long intergenic non-protein coding RNA 1479 ncRNA 13-PTNLD9-TUMOR_peak_10176 chr11 64624180 64624443 + 17.86290 NA intron (NM_001282445, intron 4 of 5) intron (NM_001282445, intron 4 of 5) -12270 NM_017525 55561 Hs.293590 NM_017525 HPRD:13013 CDC42BPG DMPK2|HSMDPKIN|KAPPA-200|MRCKG|MRCKgamma CDC42 binding protein kinase gamma (DMPK-like) protein-coding 13-PTNLD9-TUMOR_peak_43229 chr5 177477845 177478043 + 17.86290 NA Intergenic L2b|LINE|L2 43977 NR_038353 653316 Hs.652193 NM_001079527 ENSG00000204677 FAM153C NY-REN-7-like family with sequence similarity 153, member C, pseudogene pseudo 13-PTNLD9-TUMOR_peak_37953 chr4 9605736 9606176 + 17.85312 NA Intergenic HERVS71-int|LTR|ERV1 -48019 NR_031688 100302277 NR_031688 miRBase:MI0006422 MIR548I2 MIR548I-2|MIRN548I2|hsa-mir-548i-2 microRNA 548i-2 ncRNA 13-PTNLD9-TUMOR_peak_22065 chr17 74494336 74494593 + 17.85312 NA intron (NM_024599, intron 1 of 18) intron (NM_024599, intron 1 of 18) 3045 NM_024599 79651 Hs.464157 NM_024599 HPRD:07987 RHBDF2 RHBDL5|RHBDL6|TOC|TOCG rhomboid 5 homolog 2 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_26958 chr2 55278346 55278640 + 17.84285 NA promoter-TSS (NM_207520) promoter-TSS (NM_207520) -759 NM_153828 57142 Hs.637850 NM_007008 HPRD:07259 RTN4 ASY|NI220/250|NOGO|NOGO-A|NOGOC|NSP|NSP-CL|Nbla00271|Nbla10545|Nogo-B|Nogo-C|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 13-PTNLD9-TUMOR_peak_40858 chr5 53753067 53753326 + 17.84102 NA TTS (NM_006308) TTS (NM_006308) 1765 NM_006308 8988 Hs.41707 NM_006308 HPRD:06861 HSPB3 DHMN2C|HMN2C|HSPL27 heat shock 27kDa protein 3 protein-coding 13-PTNLD9-TUMOR_peak_7369 chr10 52134848 52135173 + 17.84102 NA intron (NM_147156, intron 6 of 10) intron (NM_147156, intron 6 of 10) -126640 NM_001143974 56624 Hs.512645 NM_019893 ENSG00000188611 ASAH2 BCDase|HNAC1|LCDase|N-CDase|NCDase N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2 protein-coding 13-PTNLD9-TUMOR_peak_43467 chr6 2797721 2798020 + 17.84102 NA Intergenic Intergenic 32204 NM_130395 56897 Hs.236828 NM_020135 HPRD:10494 WRNIP1 WHIP|bA420G6.2 Werner helicase interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_42215 chr5 137172816 137173028 + 17.84102 NA Intergenic Intergenic -30623 NM_006790 9499 Hs.84665 NM_006790 HPRD:04981 MYOT LGMD1|LGMD1A|MFM3|TTID|TTOD myotilin protein-coding 13-PTNLD9-TUMOR_peak_11988 chr12 6661061 6661252 + 17.83296 NA intron (NR_036467, intron 1 of 9) intron (NR_036467, intron 1 of 9) 4093 NM_080730 25900 Hs.15243 NM_015438 HPRD:09988 IFFO1 HOM-TES-103|IFFO intermediate filament family orphan 1 protein-coding 13-PTNLD9-TUMOR_peak_54657 chr9 124040846 124041144 + 17.83296 NA intron (NM_001127662, intron 1 of 16) intron (NM_001127662, intron 1 of 16) 6813 NR_103560 57000 Hs.522373 NM_020250 ENSG00000235865 GSN-AS1 C9orf31|MOST2 GSN antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_28115 chr2 113553388 113553615 + 17.83170 NA Intergenic L2c|LINE|L2 -10530 NM_000575 3552 Hs.1722 NM_000575 IL1A IL-1A|IL1|IL1-ALPHA|IL1F1 interleukin 1, alpha protein-coding 13-PTNLD9-TUMOR_peak_11403 chr11 119288459 119288682 + 17.82816 NA TTS (NM_006288) TTS (NM_006288) 5676 NM_006288 7070 Hs.644697 NM_006288 THY1 CD90 Thy-1 cell surface antigen protein-coding 13-PTNLD9-TUMOR_peak_33635 chr3 8296133 8296488 + 17.82816 NA intron (NR_033378, intron 3 of 3) intron (NR_033378, intron 3 of 3) -238316 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 13-PTNLD9-TUMOR_peak_15174 chr13 114746342 114746572 + 17.82816 NA TTS (NM_007368) TTS (NM_007368) -114493 NR_047495 100861555 Hs.353773 NR_047495 ENSG00000260910 LINC00565 - long intergenic non-protein coding RNA 565 ncRNA 13-PTNLD9-TUMOR_peak_52055 chr8 130697905 130698165 + 17.82816 NA Intergenic Intergenic 101099 NM_031415 56169 Hs.133244 NM_031415 HPRD:12222 GSDMC MLZE gasdermin C protein-coding 13-PTNLD9-TUMOR_peak_39238 chr4 122611960 122612143 + 17.82816 NA intron (NM_001154, intron 2 of 12) intron (NM_001154, intron 2 of 12) 6096 NM_001154 308 Hs.480653 NM_001154 HPRD:00568 ANXA5 ANX5|ENX2|HEL-S-7|PP4|RPRGL3 annexin A5 protein-coding 13-PTNLD9-TUMOR_peak_3252 chr1 144691893 144692187 + 17.82298 NA intron (NM_001037675, intron 7 of 20) intron (NM_001037675, intron 7 of 20) -12015 NR_037182 653513 Hs.632434 NR_037182 LOC653513 - phosphodiesterase 4D interacting protein pseudogene pseudo 13-PTNLD9-TUMOR_peak_24392 chr19 18385774 18385951 + 17.82298 NA promoter-TSS (NM_001145304) promoter-TSS (NM_001145304) -543 NM_001145304 80726 Hs.732366 NM_025249 HPRD:13882 KIAA1683 - KIAA1683 protein-coding 13-PTNLD9-TUMOR_peak_35334 chr3 111522036 111522417 + 17.81679 NA intron (NM_001134437, intron 1 of 17) intron (NM_001134437, intron 1 of 17) -55801 NM_001134438 90102 Hs.603252 NM_145753 HPRD:06611 PHLDB2 LL5b|LL5beta pleckstrin homology-like domain, family B, member 2 protein-coding 13-PTNLD9-TUMOR_peak_23962 chr19 10859559 10859922 + 17.81679 NA intron (NM_001005361, intron 1 of 20) intron (NM_001005361, intron 1 of 20) 30660 NR_030368 693223 NR_030368 MIR638 MIRN638|hsa-mir-638 microRNA 638 ncRNA 13-PTNLD9-TUMOR_peak_7842 chr10 80516623 80516957 + 17.81547 NA Intergenic Intergenic 310415 NR_024429 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_6159 chr1 246038290 246038650 + 17.81547 NA intron (NM_022743, intron 8 of 11) intron (NM_022743, intron 8 of 11) 542244 NM_022743 64754 Hs.567571 NM_022743 HPRD:12297 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_18847 chr16 27275504 27275748 + 17.81547 NA intron (NM_145080, intron 1 of 7) AluJb|SINE|Alu -3900 NR_037184 400512 Hs.434412 NR_037184 ENSG00000245888 FLJ21408 - uncharacterized LOC400512 ncRNA 13-PTNLD9-TUMOR_peak_21292 chr17 45147610 45147905 + 17.81547 NA Intergenic Intergenic -27678 NM_001288811 51326 Hs.559259 NM_016632 HPRD:17424 ARL17A ARF1P2|ARL17P1 ADP-ribosylation factor-like 17A protein-coding 13-PTNLD9-TUMOR_peak_38636 chr4 77560567 77560733 + 17.81547 NA intron (NM_020859, intron 2 of 10) intron (NM_020859, intron 2 of 10) 65929 NR_039654 100616299 NR_039654 MIR4450 - microRNA 4450 ncRNA 13-PTNLD9-TUMOR_peak_31207 chr20 44496526 44496697 + 17.80430 NA intron (NM_080752, intron 1 of 1) intron (NM_080752, intron 1 of 1) 10391 NM_080752 140831 Hs.292135 NM_080752 HPRD:15903 ZSWIM3 C20orf164|PPP1R174 zinc finger, SWIM-type containing 3 protein-coding 13-PTNLD9-TUMOR_peak_45161 chr6 44703366 44703678 + 17.80430 NA Intergenic Intergenic 300144 NR_039785 100616352 NR_039785 MIR4642 - microRNA 4642 ncRNA 13-PTNLD9-TUMOR_peak_41376 chr5 77911658 77911844 + 17.80430 NA intron (NM_005779, intron 2 of 4) intron (NM_005779, intron 2 of 4) 32897 NM_005779 10184 Hs.79299 NM_005779 HPRD:17272 LHFPL2 - lipoma HMGIC fusion partner-like 2 protein-coding 13-PTNLD9-TUMOR_peak_49674 chr7 151264085 151264327 + 17.80430 NA intron (NM_001040633, intron 11 of 15) MIRb|SINE|MIR -47196 NM_005614 6009 Hs.283521 NM_005614 HPRD:03188 RHEB RHEB2 Ras homolog enriched in brain protein-coding 13-PTNLD9-TUMOR_peak_40906 chr5 55507400 55507634 + 17.80430 NA intron (NM_024669, intron 2 of 11) intron (NM_024669, intron 2 of 11) 21669 NM_024669 79722 Hs.436214 NM_024669 HPRD:07758 ANKRD55 - ankyrin repeat domain 55 protein-coding 13-PTNLD9-TUMOR_peak_19647 chr16 69091997 69092168 + 17.80430 NA intron (NM_024562, intron 17 of 17) intron (NM_024562, intron 17 of 17) -47385 NM_001199280 3038 Hs.592069 NM_005329 HPRD:03889 HAS3 - hyaluronan synthase 3 protein-coding 13-PTNLD9-TUMOR_peak_44110 chr6 24154491 24154658 + 17.80430 NA Intergenic MIRb|SINE|MIR 28160 NM_080723 140767 Hs.726270 NM_080723 HPRD:18285 NRSN1 VMP|p24 neurensin 1 protein-coding 13-PTNLD9-TUMOR_peak_33297 chr22 39844562 39844730 + 17.80430 NA Intergenic Intergenic -8679 NM_002409 4248 Hs.276808 NM_002409 HPRD:07058 MGAT3 GNT-III|GNT3 mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase protein-coding 13-PTNLD9-TUMOR_peak_28034 chr2 111232591 111232963 + 17.80338 NA Intergenic L1MD2|LINE|L1 -2125 NM_033514 96626 Hs.535619 NM_033514 HPRD:17277 LIMS3 PINCH-3 LIM and senescent cell antigen-like domains 3 protein-coding 13-PTNLD9-TUMOR_peak_14591 chr13 36568728 36569094 + 17.79828 NA intron (NM_004734, intron 3 of 17) intron (NM_004734, intron 3 of 17) -53529 NR_031646 100302239 NR_031646 MIR548F5 MIR548F-5|MIRN548F5|hsa-mir-548f-5 microRNA 548f-5 ncRNA 13-PTNLD9-TUMOR_peak_11011 chr11 96688490 96688753 + 17.79828 NA Intergenic Intergenic -448580 NR_047481 100874053 Hs.742044 NR_047481 JRKL-AS1 - JRKL antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_47350 chr7 44224231 44224401 + 17.79828 NA intron (NM_000162, intron 1 of 9) intron (NM_000162, intron 1 of 9) 4706 NM_000162 2645 Hs.1270 NM_000162 HPRD:00680 GCK FGQTL3|GK|GLK|HHF3|HK4|HKIV|HXKP|LGLK|MODY2 glucokinase (hexokinase 4) protein-coding 13-PTNLD9-TUMOR_peak_38432 chr4 55019130 55019318 + 17.79828 NA Intergenic MLT1C|LTR|ERVL-MaLR 52976 NM_133267 170825 Hs.371899 NM_133267 GSX2 GSH2 GS homeobox 2 protein-coding 13-PTNLD9-TUMOR_peak_5336 chr1 210058086 210058379 + 17.79828 NA Intergenic Intergenic -53287 NM_153262 255928 Hs.658866 NM_153262 HPRD:11617 SYT14 SCAR11|sytXIV synaptotagmin XIV protein-coding 13-PTNLD9-TUMOR_peak_24192 chr19 14616836 14617164 + 17.79598 NA Intergenic MLT1C|LTR|ERVL-MaLR -10039 NM_202494 10755 Hs.655012 NM_005716 HPRD:05462 GIPC1 C19orf3|GIPC|GLUT1CBP|Hs.6454|IIP-1|NIP|RGS19IP1|SEMCAP|SYNECTIIN|SYNECTIN|TIP-2 GIPC PDZ domain containing family, member 1 protein-coding 13-PTNLD9-TUMOR_peak_5081 chr1 203432125 203432271 + 17.79515 NA Intergenic AluSx3|SINE|Alu -12685 NM_002725 5549 Hs.632481 NM_002725 HPRD:03556 PRELP MST161|MSTP161|SLRR2A proline/arginine-rich end leucine-rich repeat protein protein-coding 13-PTNLD9-TUMOR_peak_6786 chr10 29449049 29449256 + 17.78869 NA Intergenic Intergenic -128838 NM_032517 84569 Hs.558572 NM_032517 HPRD:14336 LYZL1 KAAG648|LYC2|PRO1278|bA534G20.1 lysozyme-like 1 protein-coding 13-PTNLD9-TUMOR_peak_11268 chr11 113845448 113845913 + 17.78869 NA promoter-TSS (NM_000869) promoter-TSS (NM_000869) -117 NR_046363 3359 Hs.413899 NM_000869 HPRD:08917 HTR3A 5-HT-3|5-HT3A|5-HT3R|5HT3R|HTR3 5-hydroxytryptamine (serotonin) receptor 3A, ionotropic protein-coding 13-PTNLD9-TUMOR_peak_431 chr1 11850962 11851227 + 17.78869 NA intron (NM_005957, intron 11 of 11) intron (NM_005957, intron 11 of 11) -15059 NM_001256959 1185 Hs.193043 NM_001286 HPRD:04102 CLCN6 CLC-6 chloride channel, voltage-sensitive 6 protein-coding 13-PTNLD9-TUMOR_peak_31438 chr20 49039794 49039950 + 17.78869 NA Intergenic Intergenic -86986 NM_002827 5770 Hs.417549 NM_002827 HPRD:01477 PTPN1 PTP1B protein tyrosine phosphatase, non-receptor type 1 protein-coding 13-PTNLD9-TUMOR_peak_11771 chr12 646948 647234 + 17.78364 NA intron (NM_173593, intron 3 of 19) intron (NM_173593, intron 3 of 19) 72488 NM_001294345 4815 Hs.655804 NM_016533 HPRD:09530 NINJ2 - ninjurin 2 protein-coding 13-PTNLD9-TUMOR_peak_37816 chr4 7103657 7103973 + 17.77113 NA intron (NR_027441, intron 1 of 1) intron (NR_027441, intron 1 of 1) 1288 NR_027441 730971 Hs.591718 NR_027441 FLJ36777 - uncharacterized LOC730971 ncRNA 13-PTNLD9-TUMOR_peak_40524 chr5 31811419 31811639 + 17.77113 NA intron (NM_178140, intron 1 of 23) intron (NM_178140, intron 1 of 23) 12498 NM_178140 23037 Hs.481819 NM_015022 HPRD:10142 PDZD2 AIPC|PAPIN|PDZK3|PIN1 PDZ domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_10175 chr11 64622488 64622723 + 17.77113 NA intron (NM_001282445, intron 5 of 5) intron (NM_001282445, intron 5 of 5) -10564 NM_017525 55561 Hs.293590 NM_017525 HPRD:13013 CDC42BPG DMPK2|HSMDPKIN|KAPPA-200|MRCKG|MRCKgamma CDC42 binding protein kinase gamma (DMPK-like) protein-coding 13-PTNLD9-TUMOR_peak_5880 chr1 234045012 234045288 + 17.77113 NA intron (NM_173508, intron 2 of 7) L2a|LINE|L2 4692 NM_173508 148641 Hs.158748 NM_173508 HPRD:15378 SLC35F3 - solute carrier family 35, member F3 protein-coding 13-PTNLD9-TUMOR_peak_54300 chr9 107753809 107754215 + 17.77113 NA Intergenic Intergenic -63485 NM_005502 19 Hs.659274 NM_005502 HPRD:02501 ABCA1 ABC-1|ABC1|CERP|HDLDT1|TGD ATP-binding cassette, sub-family A (ABC1), member 1 protein-coding 13-PTNLD9-TUMOR_peak_3209 chr1 143934701 143934944 + 17.76379 NA Intergenic Intergenic -21662 NM_001287385 554282 NM_001287385 FAM72C - family with sequence similarity 72, member C protein-coding 13-PTNLD9-TUMOR_peak_52887 chr9 21096380 21096674 + 17.75369 NA Intergenic Intergenic -18584 NM_002176 3456 Hs.93177 NM_002176 HPRD:00972 IFNB1 IFB|IFF|IFNB interferon, beta 1, fibroblast protein-coding 13-PTNLD9-TUMOR_peak_51163 chr8 75193873 75194068 + 17.75369 NA intron (NM_020647, intron 2 of 5) intron (NM_020647, intron 2 of 5) 39592 NM_020647 56704 Hs.657367 NM_020647 HPRD:07286 JPH1 JP-1|JP1 junctophilin 1 protein-coding 13-PTNLD9-TUMOR_peak_7156 chr10 43844023 43844175 + 17.75369 NA Intergenic Intergenic -22993 NM_001184963 53828 Hs.130497 NM_173160 HPRD:07019 FXYD4 CHIF FXYD domain containing ion transport regulator 4 protein-coding 13-PTNLD9-TUMOR_peak_30723 chr20 30148695 30148955 + 17.75139 NA intron (NM_178580, intron 9 of 12) intron (NM_178580, intron 9 of 12) 12241 NR_046853 100874042 Hs.743198 NR_046853 ENSG00000230613 HM13-AS1 - HM13 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_36813 chr3 177170387 177170554 + 17.75139 NA intron (NR_047568, intron 1 of 3) intron (NR_047568, intron 1 of 3) 10761 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 13-PTNLD9-TUMOR_peak_4495 chr1 176486638 176486876 + 17.75139 NA intron (NM_021936, intron 1 of 4) intron (NM_021936, intron 1 of 4) 54450 NM_021936 60676 Hs.187284 NM_020318 HPRD:10156 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 13-PTNLD9-TUMOR_peak_17034 chr15 36871663 36871878 + 17.73696 NA promoter-TSS (NM_001130010) promoter-TSS (NM_001130010) -34 NM_001290233 84529 Hs.48348 NM_032499 HPRD:13650 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 13-PTNLD9-TUMOR_peak_54428 chr9 113113347 113113647 + 17.73696 NA Intergenic Intergenic -13333 NM_001286947 255220 Hs.147064 NM_001003936 HPRD:18251 TXNDC8 SPTRX-3|TRX6|bA427L11.2 thioredoxin domain containing 8 (spermatozoa) protein-coding 13-PTNLD9-TUMOR_peak_30928 chr20 35420968 35421161 + 17.73696 NA intron (NM_080627, intron 14 of 14) intron (NM_080627, intron 14 of 14) -18834 NM_001145318 79980 Hs.632268 NM_024918 HPRD:16455 DSN1 C20orf172|KNL3|MIS13|dJ469A13.2|hKNL-3 DSN1, MIS12 kinetochore complex component protein-coding 13-PTNLD9-TUMOR_peak_39902 chr4 177223551 177223779 + 17.73696 NA Intergenic Intergenic -17425 NM_021928 60559 Hs.42194 NM_021928 HPRD:08001 SPCS3 PRO3567|SPC22/23|SPC3|YLR066W signal peptidase complex subunit 3 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_7562 chr10 69856996 69857202 + 17.73696 NA Intergenic LFSINE_Vert|SINE|SINE -8775 NM_001256267 84665 Hs.55205 NM_032578 HPRD:10536 MYPN CMD1DD|CMH22|MYOP|RCM4 myopalladin protein-coding 13-PTNLD9-TUMOR_peak_10008 chr11 61394270 61394546 + 17.73615 NA intron (NR_002775, intron 2 of 4) intron (NR_002775, intron 2 of 4) 11900 NR_002775 113157 Hs.502733 NR_002775 ENSG00000243742 RPLP0P2 RPLP0L2|RPLP0_3_1146 ribosomal protein, large, P0 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_41266 chr5 73313025 73313275 + 17.73615 NA Intergenic Intergenic 203807 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor (GEF) 28 protein-coding 13-PTNLD9-TUMOR_peak_44841 chr6 36985990 36986234 + 17.73615 NA intron (NM_173558, intron 9 of 15) intron (NM_173558, intron 9 of 15) 12689 NM_173558 221472 Hs.509664 NM_173558 HPRD:05478 FGD2 ZFYVE4 FYVE, RhoGEF and PH domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_11262 chr11 113561391 113561699 + 17.73615 NA intron (NR_110046, intron 8 of 10) intron (NR_110046, intron 8 of 10) 15550 NR_110047 80975 Hs.46720 NM_030770 HPRD:05995 TMPRSS5 SPINESIN transmembrane protease, serine 5 protein-coding 13-PTNLD9-TUMOR_peak_3434 chr1 148241439 148242071 + 17.72834 NA intron (NR_102404, intron 6 of 18).2 intron (NR_102404, intron 6 of 18).2 -39219 NM_001164261 645142 Hs.730589 NM_001164261 ENSG00000256374 PPIAL4D - peptidylprolyl isomerase A (cyclophilin A)-like 4D protein-coding 13-PTNLD9-TUMOR_peak_23030 chr18 43209053 43209283 + 17.72540 NA intron (NM_007163, intron 4 of 19) intron (NM_007163, intron 4 of 19) 14402 NM_007163 8170 Hs.710927 NM_007163 HPRD:03366 SLC14A2 HUT2|UT-A2|UT2|UTA|UTR|hUT-A6 solute carrier family 14 (urea transporter), member 2 protein-coding 13-PTNLD9-TUMOR_peak_42115 chr5 133846870 133847061 + 17.72540 NA Intergenic Intergenic 4722 NR_105045 101927934 Hs.535775 NR_105045 ENSG00000251169 LOC101927934 - uncharacterized LOC101927934 ncRNA 13-PTNLD9-TUMOR_peak_39332 chr4 129494976 129495200 + 17.72437 NA Intergenic Intergenic -235690 NM_199320 79960 Hs.12420 NM_024900 HPRD:10151 JADE1 PHF17 jade family PHD finger 1 protein-coding 13-PTNLD9-TUMOR_peak_1942 chr1 59221248 59221467 + 17.72437 NA Intergenic Intergenic 28428 NM_002228 3725 Hs.696684 NM_002228 HPRD:01302 JUN AP-1|AP1|c-Jun jun proto-oncogene protein-coding 13-PTNLD9-TUMOR_peak_16777 chr15 22511193 22511807 + 17.71939 NA Intergenic Intergenic -35065 NR_033735 646396 Hs.451294 NR_033735 REREP3 - arginine-glutamic acid dipeptide (RE) repeats pseudogene 3 pseudo 13-PTNLD9-TUMOR_peak_2744 chr1 109655370 109655539 + 17.71491 NA intron (NM_001122961, intron 1 of 4) intron (NM_001122961, intron 1 of 4) 1025 NM_001122961 127003 Hs.446962 NM_001122961 ENSG00000179902 C1orf194 - chromosome 1 open reading frame 194 protein-coding 13-PTNLD9-TUMOR_peak_28149 chr2 114128167 114128356 + 17.71491 NA Intergenic Intergenic -67007 NM_172003 150472 Hs.531330 NM_172003 HPRD:16687 CBWD2 - COBW domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_28308 chr2 122242661 122242886 + 17.71491 NA intron (NM_001142274, intron 8 of 37) intron (NM_001142274, intron 8 of 37) -45683 NR_023343 100151683 Hs.689638 NR_023343 ENSG00000264229 RNU4ATAC MOPD1|RNU4ATAC1|TALS|U4ATAC RNA, U4atac small nuclear (U12-dependent splicing) snRNA 13-PTNLD9-TUMOR_peak_14283 chr12 127610462 127610874 + 17.71491 NA Intergenic Intergenic -65726 NR_104646 101927592 Hs.385663 NR_104646 ENSG00000249345 LOC101927592 - uncharacterized LOC101927592 ncRNA 13-PTNLD9-TUMOR_peak_4682 chr1 182992604 182993281 + 17.71160 NA exon (NM_002293, exon 1 of 28) exon (NM_002293, exon 1 of 28) 347 NM_002293 3915 Hs.609663 NM_002293 HPRD:01030 LAMC1 LAMB2 laminin, gamma 1 (formerly LAMB2) protein-coding 13-PTNLD9-TUMOR_peak_35484 chr3 118903701 118904064 + 17.71160 NA intron (NM_006952, intron 1 of 7) intron (NM_006952, intron 1 of 7) 11457 NM_006952 7348 Hs.271580 NM_006952 HPRD:03853 UPK1B TSPAN20|UPIB|UPK1 uroplakin 1B protein-coding 13-PTNLD9-TUMOR_peak_53177 chr9 37412756 37413114 + 17.71160 NA Intergenic Intergenic -9772 NM_012203 9380 Hs.155742 NM_012203 HPRD:05052 GRHPR GLXR|GLYD|PH2 glyoxylate reductase/hydroxypyruvate reductase protein-coding 13-PTNLD9-TUMOR_peak_8284 chr10 106088908 106089323 + 17.70691 NA promoter-TSS (NM_001272012) promoter-TSS (NM_001272012) -365 NM_001272012 85450 Hs.523252 NM_033397 ITPRIP DANGER|KIAA1754|bA127L20|bA127L20.2 inositol 1,4,5-trisphosphate receptor interacting protein protein-coding 13-PTNLD9-TUMOR_peak_41076 chr5 65505230 65505509 + 17.70691 NA Intergenic L2|LINE|L2 64706 NM_139168 140890 Hs.49367 NM_139168 HPRD:18043 SREK1 SFRS12|SRrp508|SRrp86 splicing regulatory glutamine/lysine-rich protein 1 protein-coding 13-PTNLD9-TUMOR_peak_53185 chr9 37487249 37487560 + 17.69819 NA intron (NM_001282766, intron 2 of 12) L2b|LINE|L2 1472 NM_022490 64425 Hs.591087 NM_022490 HPRD:15096 POLR1E PAF53|PRAF1 polymerase (RNA) I polypeptide E, 53kDa protein-coding 13-PTNLD9-TUMOR_peak_19806 chr16 77533395 77533617 + 17.69231 NA Intergenic Intergenic -64495 NM_199355 170692 Hs.188746 NM_139054 HPRD:06333 ADAMTS18 ADAMTS21|KNO2|MMCAT ADAM metallopeptidase with thrombospondin type 1 motif, 18 protein-coding 13-PTNLD9-TUMOR_peak_46442 chr6 159538102 159538358 + 17.69231 NA Intergenic Intergenic -52199 NM_032532 84624 Hs.520525 NM_032532 HPRD:13547 FNDC1 AGS8|FNDC2|MEL4B3|bA243O10.1|dJ322A24.1 fibronectin type III domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_568 chr1 17786668 17787104 + 17.69231 NA Intergenic Intergenic -20636 NM_018715 55920 Hs.380857 NM_018715 HPRD:18171 RCC2 TD-60 regulator of chromosome condensation 2 protein-coding 13-PTNLD9-TUMOR_peak_23097 chr18 45563319 45563515 + 17.69231 NA intron (NM_001039360, intron 2 of 2) intron (NM_001039360, intron 2 of 2) 100263 NM_001039360 201501 Hs.515388 NM_001039360 ENSG00000184828 ZBTB7C APM-1|APM1|ZBTB36|ZNF857C zinc finger and BTB domain containing 7C protein-coding 13-PTNLD9-TUMOR_peak_3803 chr1 154709428 154709602 + 17.69231 NA intron (NM_002249, intron 3 of 7) L2c|LINE|L2 -109059 NM_001025107 103 Hs.12341 NM_001111 HPRD:07528 ADAR ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136 adenosine deaminase, RNA-specific protein-coding 13-PTNLD9-TUMOR_peak_27218 chr2 70608911 70609302 + 17.69231 NA Intergenic Intergenic -79886 NM_032822 84908 Hs.516077 NM_032822 HPRD:07866 FAM136A - family with sequence similarity 136, member A protein-coding 13-PTNLD9-TUMOR_peak_17901 chr15 86037744 86037949 + 17.69231 NA intron (NM_007200, intron 2 of 36) L2|LINE|L2 113999 NM_006738 11214 Hs.459211 NM_006738 HPRD:05253 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A kinase (PRKA) anchor protein 13 protein-coding 13-PTNLD9-TUMOR_peak_35509 chr3 119878977 119879234 + 17.68393 NA Intergenic Intergenic -65841 NM_002093 2932 Hs.445733 NM_002093 HPRD:05418 GSK3B - glycogen synthase kinase 3 beta protein-coding 13-PTNLD9-TUMOR_peak_53688 chr9 78979997 78980259 + 17.68393 NA Intergenic Intergenic 29316 NM_018339 55312 Hs.37558 NM_018339 HPRD:17969 RFK RIFK riboflavin kinase protein-coding 13-PTNLD9-TUMOR_peak_24536 chr19 23732986 23733262 + 17.68077 NA Intergenic HERVH-int|LTR|ERV1 136893 NM_138330 171392 Hs.264345 NM_138330 HPRD:18193 ZNF675 TBZF|TIZ zinc finger protein 675 protein-coding 13-PTNLD9-TUMOR_peak_31174 chr20 43912422 43912647 + 17.67070 NA Intergenic Intergenic -22949 NM_001281448 11317 Hs.248217 NM_014276 RBPJL RBPSUHL|SUHL recombination signal binding protein for immunoglobulin kappa J region-like protein-coding 13-PTNLD9-TUMOR_peak_15068 chr13 107124391 107124832 + 17.67070 NA Intergenic Intergenic 62777 NM_004093 1948 Hs.149239 NM_004093 HPRD:02754 EFNB2 EPLG5|HTKL|Htk-L|LERK5 ephrin-B2 protein-coding 13-PTNLD9-TUMOR_peak_13278 chr12 69799409 69799554 + 17.67070 NA Intergenic MER44C|DNA|TcMar-Tigger 45991 NM_006530 8089 Hs.4029 NM_006530 HPRD:03666 YEATS4 4930573H17Rik|B230215M10Rik|GAS41|NUBI-1|YAF9 YEATS domain containing 4 protein-coding 13-PTNLD9-TUMOR_peak_4647 chr1 181616913 181617057 + 17.67070 NA intron (NM_001205293, intron 6 of 47) intron (NM_001205293, intron 6 of 47) 164299 NM_001205294 777 Hs.437444 NM_000721 HPRD:03006 CACNA1E BII|CACH6|CACNL1A6|Cav2.3 calcium channel, voltage-dependent, R type, alpha 1E subunit protein-coding 13-PTNLD9-TUMOR_peak_51683 chr8 118411154 118411398 + 17.67070 NA Intergenic Intergenic -121676 NM_001282986 90390 Hs.492612 NM_080651 HPRD:11631 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 13-PTNLD9-TUMOR_peak_31997 chr21 19865871 19866099 + 17.67070 NA Intergenic Intergenic -90015 NM_002772 5651 Hs.149473 NM_002772 HPRD:05972 TMPRSS15 ENTK|PRSS7 transmembrane protease, serine 15 protein-coding 13-PTNLD9-TUMOR_peak_11558 chr11 126335500 126335909 + 17.65857 NA intron (NM_001301097, intron 5 of 15) intron (NM_001301097, intron 5 of 15) 59627 NM_001254759 6484 Hs.591947 NM_006278 HPRD:00084 ST3GAL4 CGS23|NANTA3|SAT3|SIAT4|SIAT4C|ST3GalIV|STZ ST3 beta-galactoside alpha-2,3-sialyltransferase 4 protein-coding 13-PTNLD9-TUMOR_peak_5428 chr1 220603502 220603697 + 17.65857 NA Intergenic Intergenic -97926 NM_001286126 4139 Hs.497806 NM_018650 HPRD:07353 MARK1 MARK|Par-1c|Par1c MAP/microtubule affinity-regulating kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_23093 chr18 45529392 45529644 + 17.65857 NA Intergenic Intergenic -72001 NM_001003652 4087 Hs.12253 NM_005901 HPRD:03221 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding 13-PTNLD9-TUMOR_peak_1551 chr1 45166765 45166957 + 17.65857 NA intron (NM_001145636, intron 5 of 11) intron (NM_001145636, intron 5 of 11) 26467 NM_001145636 339541 Hs.173679 NM_001004307 HPRD:17525 C1orf228 NCRNA00082|p40 chromosome 1 open reading frame 228 protein-coding 13-PTNLD9-TUMOR_peak_2833 chr1 111313984 111314225 + 17.65857 NA Intergenic Intergenic -96449 NM_002232 3738 Hs.169948 NM_002232 HPRD:15937 KCNA3 HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3 potassium voltage-gated channel, shaker-related subfamily, member 3 protein-coding 13-PTNLD9-TUMOR_peak_48388 chr7 97162376 97162495 + 17.65857 NA Intergenic L1PA3|LINE|L1 -198836 NM_003182 6863 Hs.2563 NM_003182 HPRD:08876 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin, precursor 1 protein-coding 13-PTNLD9-TUMOR_peak_34967 chr3 72674808 72675091 + 17.65850 NA Intergenic Intergenic -179175 NM_012234 23429 Hs.7910 NM_012234 RYBP AAP1|DEDAF|YEAF1 RING1 and YY1 binding protein protein-coding 13-PTNLD9-TUMOR_peak_42311 chr5 139621047 139621274 + 17.65850 NA intron (NM_032412, intron 2 of 2) intron (NM_032412, intron 2 of 2) 61529 NM_002622 5201 Hs.483564 NM_002622 HPRD:05357 PFDN1 PDF|PFD1 prefoldin subunit 1 protein-coding 13-PTNLD9-TUMOR_peak_17449 chr15 65186145 65186491 + 17.65850 NA Intergenic Intergenic -17783 NM_182703 348094 Hs.207157 NM_182703 HPRD:14178 ANKDD1A - ankyrin repeat and death domain containing 1A protein-coding 13-PTNLD9-TUMOR_peak_37316 chr3 194209150 194209500 + 17.65429 NA TTS (NR_033929) TTS (NR_033929) 1456 NR_033929 401106 Hs.407087 NR_033929 LINC00884 - long intergenic non-protein coding RNA 884 ncRNA 13-PTNLD9-TUMOR_peak_20927 chr17 36031985 36032166 + 17.65157 NA Intergenic Intergenic -28582 NM_007010 11056 Hs.590937 NM_007010 HPRD:09911 DDX52 HUSSY19|ROK1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 protein-coding 13-PTNLD9-TUMOR_peak_38853 chr4 89364117 89364347 + 17.65157 NA TTS (NM_001165136) TTS (NM_001165136) -14036 NM_016323 51191 Hs.26663 NM_016323 HPRD:10502 HERC5 CEB1|CEBP1 HECT and RLD domain containing E3 ubiquitin protein ligase 5 protein-coding 13-PTNLD9-TUMOR_peak_34840 chr3 64224727 64224975 + 17.65157 NA Intergenic Intergenic -13720 NM_198859 166336 Hs.148105 NM_198859 HPRD:16342 PRICKLE2 EPM5 prickle homolog 2 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_939 chr1 31837502 31837730 + 17.65157 NA TTS (NM_004102) TTS (NM_004102) 8307 NM_004102 2170 Hs.657242 NM_004102 FABP3 FABP11|H-FABP|M-FABP|MDGI|O-FABP fatty acid binding protein 3, muscle and heart (mammary-derived growth inhibitor) protein-coding 13-PTNLD9-TUMOR_peak_30248 chr20 749165 749551 + 17.65157 NA promoter-TSS (NM_033409) promoter-TSS (NM_033409) -130 NM_033409 113278 Hs.283865 NM_033409 HPRD:09843 SLC52A3 BVVLS|BVVLS1|C20orf54|RFT2|RFVT3|bA371L19.1|hRFT2 solute carrier family 52 (riboflavin transporter), member 3 protein-coding 13-PTNLD9-TUMOR_peak_2648 chr1 100819662 100819787 + 17.64429 NA intron (NM_003672, intron 2 of 15) intron (NM_003672, intron 2 of 15) 1701 NM_033312 8556 Hs.127411 NM_003672 HPRD:04614 CDC14A cdc14|hCDC14 cell division cycle 14A protein-coding 13-PTNLD9-TUMOR_peak_33970 chr3 16353741 16353992 + 17.63233 NA Intergenic Intergenic 47199 NM_138381 92106 Hs.655449 NM_138381 HPRD:14446 OXNAD1 - oxidoreductase NAD-binding domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_31398 chr20 48636456 48636733 + 17.63233 NA Intergenic Intergenic 21572 NR_051976 100887755 Hs.195705 NR_051976 TRERNA1 LINC00651|treRNA translation regulatory long non-coding RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_908 chr1 30447166 30447566 + 17.63233 NA Intergenic Intergenic 63093 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LOC101929406 - uncharacterized LOC101929406 ncRNA 13-PTNLD9-TUMOR_peak_50503 chr8 29512982 29513219 + 17.63233 NA Intergenic Intergenic 92525 NR_026765 619351 Hs.566911 NR_026765 ENSG00000251191 LINC00589 C8orf75 long intergenic non-protein coding RNA 589 ncRNA 13-PTNLD9-TUMOR_peak_28578 chr2 137395905 137396088 + 17.63211 NA Intergenic Intergenic -352466 NM_001080427 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin, type I, domain containing 7B protein-coding 13-PTNLD9-TUMOR_peak_28813 chr2 157393623 157393999 + 17.63211 NA intron (NM_001083112, intron 6 of 16) intron (NM_001083112, intron 6 of 16) 100911 NM_000408 2820 Hs.512382 NM_000408 HPRD:00715 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 (mitochondrial) protein-coding 13-PTNLD9-TUMOR_peak_9088 chr11 12159843 12160263 + 17.61026 NA intron (NM_001282665, intron 1 of 21) intron (NM_001282665, intron 1 of 21) 116 NM_001282664 9645 Hs.501928 NM_014632 HPRD:10085 MICAL2 MICAL-2|MICAL2PV1|MICAL2PV2 microtubule associated monooxygenase, calponin and LIM domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_49653 chr7 150930278 150930447 + 17.60668 NA 5' UTR (NM_019015, exon 1 of 4) 5' UTR (NM_019015, exon 1 of 4) 787 NM_001284295 54480 Hs.647084 NM_019015 HPRD:10474 CHPF2 CSGLCA-T|CSGlcAT|ChSy-3|chPF-2 chondroitin polymerizing factor 2 protein-coding 13-PTNLD9-TUMOR_peak_13130 chr12 63439054 63439366 + 17.60447 NA Intergenic Intergenic 107380 NM_000706 552 Hs.2131 NM_000706 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 13-PTNLD9-TUMOR_peak_26242 chr2 19273457 19273651 + 17.60447 NA Intergenic Intergenic -274636 NR_039914 100616307 NR_039914 miRBase:MI0017398 MIR4757 - microRNA 4757 ncRNA 13-PTNLD9-TUMOR_peak_39123 chr4 114791260 114791462 + 17.60447 NA Intergenic THE1D|LTR|ERVL-MaLR -108278 NM_001221 817 Hs.144114 NM_001221 HPRD:09653 CAMK2D CAMKD calcium/calmodulin-dependent protein kinase II delta protein-coding 13-PTNLD9-TUMOR_peak_21629 chr17 56818509 56818652 + 17.60447 NA Intergenic Tigger7|DNA|TcMar-Tigger -14650 NM_014906 22843 Hs.245044 NM_014906 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent, 1E protein-coding 13-PTNLD9-TUMOR_peak_43013 chr5 171788683 171788909 + 17.60447 NA intron (NM_001017995, intron 7 of 12) intron (NM_001017995, intron 7 of 12) -78001 NM_152277 92181 Hs.131570 NM_152277 HPRD:13118 UBTD2 DCUBP ubiquitin domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_33429 chr22 46034864 46035327 + 17.60332 NA Intergenic Intergenic -32583 NM_001167621 25814 Hs.475125 NM_013236 HPRD:04624 ATXN10 E46L|HUMEEP|SCA10 ataxin 10 protein-coding 13-PTNLD9-TUMOR_peak_13812 chr12 110476932 110477182 + 17.60332 NA 3' UTR (NM_033121, exon 15 of 15) 3' UTR (NM_033121, exon 15 of 15) 28443 NM_207435 400073 Hs.44817 NM_207435 HPRD:13443 C12orf76 - chromosome 12 open reading frame 76 protein-coding 13-PTNLD9-TUMOR_peak_36612 chr3 161067728 161067989 + 17.60332 NA intron (NM_001040100, intron 2 of 2) intron (NM_001040100, intron 2 of 2) 22013 NM_001040100 165679 Hs.369104 NM_145035 SPTSSB ADMP|C3orf57|SSSPTB serine palmitoyltransferase, small subunit B protein-coding 13-PTNLD9-TUMOR_peak_9665 chr11 45758054 45758409 + 17.60332 NA Intergenic MLT1H|LTR|ERVL-MaLR 14373 NR_047569 100507384 Hs.259426 NR_047569 ENSG00000254519 LOC100507384 - uncharacterized LOC100507384 ncRNA 13-PTNLD9-TUMOR_peak_4732 chr1 184026146 184026600 + 17.60332 NA intron (NM_001127394, intron 3 of 3) intron (NM_001127394, intron 3 of 3) 5588 NR_125335 116461 Hs.548197 NM_052965 HPRD:12292 TSEN15 C1orf19|sen15 TSEN15 tRNA splicing endonuclease subunit protein-coding 13-PTNLD9-TUMOR_peak_37530 chr4 604360 604864 + 17.60332 NA Intergenic MLT1H|LTR|ERVL-MaLR -14751 NM_000283 5158 Hs.623810 NM_000283 HPRD:01571 PDE6B CSNB3|CSNBAD2|PDEB|RP40|rd1 phosphodiesterase 6B, cGMP-specific, rod, beta protein-coding 13-PTNLD9-TUMOR_peak_42287 chr5 139104661 139104833 + 17.58064 NA Intergenic Intergenic 21061 NR_105052 101929696 Hs.147408 NR_105052 ENSG00000249131 LOC101929696 - uncharacterized LOC101929696 ncRNA 13-PTNLD9-TUMOR_peak_54074 chr9 97683448 97683647 + 17.58031 NA intron (NM_032823, intron 5 of 14) intron (NM_032823, intron 5 of 14) 111303 NR_031755 100313780 NR_031755 MIR2278 - microRNA 2278 ncRNA 13-PTNLD9-TUMOR_peak_2127 chr1 67966190 67966366 + 17.57887 NA Intergenic Intergenic -70155 NM_001018068 26135 Hs.530412 NM_015640 ENSG00000142864 SERBP1 CHD3IP|HABP4L|PAI-RBP1|PAIRBP1 SERPINE1 mRNA binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_45169 chr6 45413599 45413988 + 17.57887 NA intron (NM_001024630, intron 5 of 8) intron (NM_001024630, intron 5 of 8) 23479 NM_001278478 860 Hs.535845 NM_004348 HPRD:02566 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA runt-related transcription factor 2 protein-coding 13-PTNLD9-TUMOR_peak_36431 chr3 152687852 152688007 + 17.57887 NA Intergenic L2a|LINE|L2 135193 NM_002563 5028 Hs.654526 NM_002563 HPRD:03103 P2RY1 P2Y1 purinergic receptor P2Y, G-protein coupled, 1 protein-coding 13-PTNLD9-TUMOR_peak_9478 chr11 33934435 33934587 + 17.57887 NA Intergenic Intergenic -20675 NM_005574 4005 Hs.34560 NM_005574 HPRD:01586 LMO2 RBTN2|RBTNL1|RHOM2|TTG2 LIM domain only 2 (rhombotin-like 1) protein-coding 13-PTNLD9-TUMOR_peak_1316 chr1 41118765 41118929 + 17.57887 NA intron (NM_014747, intron 1 of 7) intron (NM_014747, intron 1 of 7) 12477 NM_014747 9783 Hs.654808 NM_014747 HPRD:17976 RIMS3 NIM3|RIM3 regulating synaptic membrane exocytosis 3 protein-coding 13-PTNLD9-TUMOR_peak_41944 chr5 126423902 126424270 + 17.57162 NA Intergenic L3|LINE|CR1 -14902 NM_001164479 401207 Hs.49573 NM_001164478 ENSG00000164241 C5orf63 YDR286C chromosome 5 open reading frame 63 protein-coding 13-PTNLD9-TUMOR_peak_899 chr1 30112988 30113222 + 17.57162 NA Intergenic MIRb|SINE|MIR 397354 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LOC101929406 - uncharacterized LOC101929406 ncRNA 13-PTNLD9-TUMOR_peak_2003 chr1 61899937 61900141 + 17.57162 NA intron (NM_001145511, intron 10 of 10) intron (NM_001145511, intron 10 of 10) -180849 NR_104180 645030 Hs.632410 NR_104180 NFIA-AS1 - NFIA antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_28584 chr2 137986238 137986473 + 17.57162 NA intron (NM_001080427, intron 6 of 26) intron (NM_001080427, intron 6 of 26) 237893 NM_001080427 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin, type I, domain containing 7B protein-coding 13-PTNLD9-TUMOR_peak_17898 chr15 85901286 85901512 + 17.57162 NA Intergenic Intergenic -22448 NM_007200 11214 Hs.459211 NM_006738 HPRD:05253 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A kinase (PRKA) anchor protein 13 protein-coding 13-PTNLD9-TUMOR_peak_6319 chr10 3791821 3792055 + 17.57162 NA Intergenic Intergenic 35535 NM_001300 1316 Hs.4055 NM_001300 HPRD:03632 KLF6 BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9 Kruppel-like factor 6 protein-coding 13-PTNLD9-TUMOR_peak_29801 chr2 217970520 217970794 + 17.57162 NA Intergenic Intergenic -245875 NM_003284 7141 Hs.3017 NM_003284 HPRD:01830 TNP1 TP1 transition protein 1 (during histone to protamine replacement) protein-coding 13-PTNLD9-TUMOR_peak_3871 chr1 155436880 155437142 + 17.57162 NA intron (NM_018489, intron 3 of 27) intron (NM_018489, intron 3 of 27) 34040 NR_034180 645682 Hs.632482 NR_034180 ENSG00000237872 POU5F1P4 Oct4-pg4|POU5FLC1 POU class 5 homeobox 1 pseudogene 4 pseudo 13-PTNLD9-TUMOR_peak_45732 chr6 90994051 90994216 + 17.57162 NA intron (NM_021813, intron 1 of 8) intron (NM_021813, intron 1 of 8) 12494 NM_021813 60468 Hs.269764 NM_021813 HPRD:12012 BACH2 BTBD25 BTB and CNC homology 1, basic leucine zipper transcription factor 2 protein-coding 13-PTNLD9-TUMOR_peak_31052 chr20 39193791 39193933 + 17.56254 NA Intergenic Intergenic 124018 NM_005461 9935 Hs.169487 NM_005461 HPRD:07129 MAFB KRML|MCTO v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog B protein-coding 13-PTNLD9-TUMOR_peak_54567 chr9 118024797 118025098 + 17.56254 NA intron (NM_017418, intron 2 of 7) intron (NM_017418, intron 2 of 7) 120850 NM_017418 50514 Hs.148841 NM_017418 HPRD:16068 DEC1 CTS9 deleted in esophageal cancer 1 protein-coding 13-PTNLD9-TUMOR_peak_9274 chr11 19463796 19464150 + 17.56254 NA intron (NM_001111018, intron 1 of 37) intron (NM_001111018, intron 1 of 37) 64803 NR_049725 100874012 Hs.434602 NR_049725 ENSG00000255043 NAV2-AS5 - NAV2 antisense RNA 5 ncRNA 13-PTNLD9-TUMOR_peak_37891 chr4 8474687 8474979 + 17.56254 NA intron (NM_152544, intron 10 of 10) intron (NM_152544, intron 10 of 10) 32301 NM_152544 152992 Hs.566191 NM_024950 HPRD:08760 TRMT44 C4orf23|METTL19|TRM44 tRNA methyltransferase 44 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_6599 chr10 17965727 17966123 + 17.54735 NA intron (NM_002438, intron 4 of 29) intron (NM_002438, intron 4 of 29) -75302 NM_001098844 653567 Hs.564139 NM_001013629 ENSG00000148483 TMEM236 FAM23A|FAM23B|bA162I21.2|bA16O1.2 transmembrane protein 236 protein-coding 13-PTNLD9-TUMOR_peak_41679 chr5 106878679 106878907 + 17.54735 NA intron (NM_001962, intron 1 of 4) intron (NM_001962, intron 1 of 4) 127803 NM_001962 1946 Hs.288741 NM_001962 HPRD:03324 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin-A5 protein-coding 13-PTNLD9-TUMOR_peak_36583 chr3 159706438 159706718 + 17.54735 NA promoter-TSS (NM_000882) promoter-TSS (NM_000882) -45 NM_000882 3592 Hs.673 NM_000882 HPRD:01193 IL12A CLMF|IL-12A|NFSK|NKSF1|P35 interleukin 12A protein-coding 13-PTNLD9-TUMOR_peak_34370 chr3 43811128 43811343 + 17.54735 NA Intergenic Intergenic 78860 NM_016006 51099 Hs.19385 NM_016006 ABHD5 CDS|CGI58|IECN2|NCIE2 abhydrolase domain containing 5 protein-coding 13-PTNLD9-TUMOR_peak_35667 chr3 124867784 124868013 + 17.54604 NA intron (NM_024628, intron 5 of 13) intron (NM_024628, intron 5 of 13) 2498 NR_049815 100847039 NR_049815 MIR5092 - microRNA 5092 ncRNA 13-PTNLD9-TUMOR_peak_47124 chr7 28081117 28081438 + 17.53882 NA intron (NM_175061, intron 1 of 4) intron (NM_175061, intron 1 of 4) -138799 NR_034097 100128081 Hs.434307 NR_034097 JAZF1-AS1 - JAZF1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_35678 chr3 125199930 125200205 + 17.53882 NA intron (NM_003794, intron 6 of 13) L2|LINE|L2 38991 NM_003794 8723 Hs.507243 NM_003794 HPRD:09334 SNX4 ATG24B sorting nexin 4 protein-coding 13-PTNLD9-TUMOR_peak_50474 chr8 28458487 28458661 + 17.53882 NA Intergenic Intergenic -95875 NR_036250 100422903 NR_036250 miRBase:MI0015896 MIR4288 - microRNA 4288 ncRNA 13-PTNLD9-TUMOR_peak_54052 chr9 97316750 97316976 + 17.53882 NA promoter-TSS (NR_121566) promoter-TSS (NR_121566) -464 NR_121569 101928099 Hs.674409 NR_121566 PCAT7 PCAN-R2 prostate cancer associated transcript 7 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_33941 chr3 15470210 15470439 + 17.53882 NA intron (NM_033083, intron 1 of 5) UCON29|DNA|PiggyBac? 1260 NM_033083 85403 Hs.716733 NM_033083 HPRD:12209 EAF1 - ELL associated factor 1 protein-coding 13-PTNLD9-TUMOR_peak_45495 chr6 73678552 73678755 + 17.53882 NA intron (NM_001160133, intron 1 of 14) intron (NM_001160133, intron 1 of 14) -1177 NR_036244 100423005 NR_036244 miRBase:MI0015890 MIR4282 - microRNA 4282 ncRNA 13-PTNLD9-TUMOR_peak_33067 chr22 29949562 29949931 + 17.52968 NA promoter-TSS (NM_001002879) promoter-TSS (NM_001002879) -10 NM_001002877 8563 Hs.75361 NM_003678 HPRD:16650 THOC5 C22orf19|Fmip|PK1.3|fSAP79 THO complex 5 protein-coding 13-PTNLD9-TUMOR_peak_50406 chr8 26467004 26467217 + 17.52968 NA intron (NM_001197293, intron 3 of 13) intron (NM_001197293, intron 3 of 13) 31189 NM_001244604 1808 Hs.593187 NM_001386 HPRD:03914 DPYSL2 CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2 dihydropyrimidinase-like 2 protein-coding 13-PTNLD9-TUMOR_peak_33939 chr3 15428718 15429033 + 17.52968 NA Intergenic MER41B|LTR|ERV1 40167 NM_152396 131965 Hs.149487 NM_152396 HPRD:14494 METTL6 - methyltransferase like 6 protein-coding 13-PTNLD9-TUMOR_peak_5833 chr1 232278220 232278786 + 17.51456 NA Intergenic Intergenic -324240 NR_002227 27184 Hs.720568 NR_002227 DISC2 DISC1-AS1|DISC1OS|NCRNA00015 disrupted in schizophrenia 2 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_44583 chr6 31875179 31875408 + 17.51456 NA intron (NM_001178063, intron 1 of 13).3 AluJb|SINE|Alu -5524 NM_181842 221527 Hs.234027 NM_181842 HPRD:15691 ZBTB12 Bat9|C6orf46|D6S59E|G10|NG35 zinc finger and BTB domain containing 12 protein-coding 13-PTNLD9-TUMOR_peak_52145 chr8 133846050 133846405 + 17.51148 NA intron (NM_001277196, intron 14 of 19) MER5A|DNA|hAT-Charlie -32978 NM_003235 7038 Hs.654591 NM_003235 HPRD:01782 TG AITD3|TGN thyroglobulin protein-coding 13-PTNLD9-TUMOR_peak_21022 chr17 38677778 38678137 + 17.51148 NA Intergenic Intergenic -20103 NM_032865 84951 Hs.438292 NM_032865 HPRD:12223 TNS4 CTEN tensin 4 protein-coding 13-PTNLD9-TUMOR_peak_52234 chr8 136717472 136717723 + 17.51148 NA Intergenic Intergenic 247881 NM_006558 10656 Hs.444558 NM_006558 HPRD:10007 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH domain containing, RNA binding, signal transduction associated 3 protein-coding 13-PTNLD9-TUMOR_peak_14634 chr13 41019647 41019977 + 17.51148 NA intron (NR_024506, intron 5 of 5) intron (NR_024506, intron 5 of 5) 35331 NR_024507 646982 Hs.287664 NR_024505 LINC00598 TTL long intergenic non-protein coding RNA 598 ncRNA 13-PTNLD9-TUMOR_peak_39377 chr4 137241325 137241817 + 17.51148 NA Intergenic L1M1|LINE|L1 -406736 NR_103763 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 13-PTNLD9-TUMOR_peak_17109 chr15 41541762 41542260 + 17.51148 NA intron (NM_007236, intron 2 of 6) intron (NM_007236, intron 2 of 6) 18574 NM_007236 11261 Hs.406234 NM_007236 HPRD:06101 CHP1 CHP|SLC9A1BP|Sid470p|p22|p24 calcineurin-like EF-hand protein 1 protein-coding 13-PTNLD9-TUMOR_peak_41920 chr5 125690046 125690384 + 17.51148 NA Intergenic Intergenic -5573 NM_001146319 65983 Hs.363558 NM_023927 HPRD:11402 GRAMD3 NS3TP2 GRAM domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_26007 chr2 7988118 7988279 + 17.51148 NA Intergenic Intergenic 51588 NR_110256 101929551 Hs.116006 NR_110256 LOC101929551 - uncharacterized LOC101929551 ncRNA 13-PTNLD9-TUMOR_peak_45724 chr6 90699491 90699795 + 17.50686 NA intron (NM_021813, intron 6 of 8) intron (NM_021813, intron 6 of 8) 95455 NM_032602 84694 Hs.334499 NM_032602 HPRD:13104 GJA10 CX62 gap junction protein, alpha 10, 62kDa protein-coding 13-PTNLD9-TUMOR_peak_30223 chr2 243012087 243012488 + 17.50686 NA intron (NR_110220, intron 3 of 3) intron (NR_110220, intron 3 of 3) -18557 NR_024437 728323 Hs.471887 NR_024437 LOC728323 - uncharacterized LOC728323 ncRNA 13-PTNLD9-TUMOR_peak_5969 chr1 235632353 235632566 + 17.50686 NA intron (NM_001277155, intron 7 of 7) L2b|LINE|L2 35322 NM_001277155 148789 Hs.498143 NM_152490 HPRD:16533 B3GALNT2 B3GalNAc-T2|MDDGA11 beta-1,3-N-acetylgalactosaminyltransferase 2 protein-coding 13-PTNLD9-TUMOR_peak_40946 chr5 56662669 56662928 + 17.50686 NA Intergenic Intergenic 115838 NM_001017992 345651 Hs.482167 NM_001017992 HPRD:18598 ACTBL2 ACT actin, beta-like 2 protein-coding 13-PTNLD9-TUMOR_peak_25991 chr2 7067320 7067642 + 17.50686 NA intron (NM_014746, intron 1 of 8) intron (NM_014746, intron 1 of 8) -8668 NR_033997 386597 Hs.559010 NR_033997 ENSG00000228203 RNF144A-AS1 - RNF144A antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_45490 chr6 73456137 73456292 + 17.50686 NA intron (NM_001160133, intron 1 of 14) intron (NM_001160133, intron 1 of 14) 115991 NR_120503 100507381 Hs.662412 NR_120503 KCNQ5-IT1 - KCNQ5 intronic transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_642 chr1 22511820 22512001 + 17.50686 NA Intergenic Intergenic -42391 NM_030761 54361 Hs.25766 NM_030761 HPRD:04601 WNT4 SERKAL|WNT-4 wingless-type MMTV integration site family, member 4 protein-coding 13-PTNLD9-TUMOR_peak_41326 chr5 75599788 75600061 + 17.50686 NA intron (NM_001297716, intron 12 of 12) intron (NM_001297716, intron 12 of 12) -99156 NM_006633 10788 Hs.291030 NM_006633 HPRD:09253 IQGAP2 - IQ motif containing GTPase activating protein 2 protein-coding 13-PTNLD9-TUMOR_peak_54551 chr9 117657179 117657360 + 17.50686 NA intron (NM_001252290, intron 4 of 4) intron (NM_001252290, intron 4 of 4) 35606 NM_001244 944 Hs.494901 NM_001244 TNFSF8 CD153|CD30L|CD30LG tumor necrosis factor (ligand) superfamily, member 8 protein-coding 13-PTNLD9-TUMOR_peak_54531 chr9 117126901 117127352 + 17.50157 NA intron (NM_030767, intron 6 of 21) intron (NM_030767, intron 6 of 21) 29559 NM_030767 80709 Hs.494895 NM_030767 HPRD:16148 AKNA - AT-hook transcription factor protein-coding 13-PTNLD9-TUMOR_peak_51818 chr8 124070410 124070899 + 17.49249 NA Intergenic Intergenic -14266 NM_145647 93594 Hs.492716 NM_145647 HPRD:11319 TBC1D31 Gm85|WDR67 TBC1 domain family, member 31 protein-coding 13-PTNLD9-TUMOR_peak_10660 chr11 75365431 75365705 + 17.49249 NA intron (NM_033063, intron 1 of 3) L2c|LINE|L2 13911 NM_207577 4135 Hs.585540 NM_033063 HPRD:15989 MAP6 MTAP6|N-STOP|STOP microtubule-associated protein 6 protein-coding 13-PTNLD9-TUMOR_peak_24315 chr19 17428297 17428575 + 17.49249 NA intron (NM_024050, intron 4 of 4) AluJr|SINE|Alu 8099 NM_024050 79016 Hs.466154 NM_024050 HPRD:15107 DDA1 C19orf58|PCIA1 DET1 and DDB1 associated 1 protein-coding 13-PTNLD9-TUMOR_peak_26183 chr2 15814699 15814968 + 17.48512 NA Intergenic Intergenic -16073 NR_110201 101926966 Hs.502835 NR_110201 ENSG00000231031 LOC101926966 - uncharacterized LOC101926966 ncRNA 13-PTNLD9-TUMOR_peak_19699 chr16 70728035 70728305 + 17.47841 NA intron (NM_018052, intron 17 of 18) intron (NM_018052, intron 17 of 18) -8216 NM_138383 92154 Hs.432387 NM_138383 HPRD:14289 MTSS1L ABBA-1 metastasis suppressor 1-like protein-coding 13-PTNLD9-TUMOR_peak_48408 chr7 97735586 97735857 + 17.47841 NA promoter-TSS (NM_014916) promoter-TSS (NM_014916) -476 NM_014916 22853 Hs.444179 NM_014916 HPRD:13994 LMTK2 AATYK2|BREK|KPI-2|KPI2|LMR2|PPP1R100|cprk lemur tyrosine kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_51403 chr8 101522325 101522734 + 17.47841 NA 3' UTR (NM_001270379, exon 6 of 6) 3' UTR (NM_001270379, exon 6 of 6) 49410 NM_001270378 157567 Hs.530199 NM_198401 HPRD:14103 ANKRD46 ANK-S|GENX-115279 ankyrin repeat domain 46 protein-coding 13-PTNLD9-TUMOR_peak_37755 chr4 5876596 5876807 + 17.47374 NA intron (NM_001014809, intron 1 of 13) intron (NM_001014809, intron 1 of 13) 12839 NM_001288662 1400 Hs.135270 NM_001313 HPRD:03913 CRMP1 CRMP-1|DPYSL1|DRP-1|DRP1|ULIP-3 collapsin response mediator protein 1 protein-coding 13-PTNLD9-TUMOR_peak_44990 chr6 41709506 41709761 + 17.47374 NA intron (NM_001166424, intron 5 of 6) intron (NM_001166424, intron 5 of 6) 5506 NM_001166424 5225 Hs.1867 NM_002630 HPRD:01357 PGC PEPC|PGII progastricsin (pepsinogen C) protein-coding 13-PTNLD9-TUMOR_peak_54519 chr9 116870324 116870465 + 17.47374 NA Intergenic Intergenic -9057 NM_138424 113220 Hs.28149 NM_138424 HPRD:13914 KIF12 - kinesin family member 12 protein-coding 13-PTNLD9-TUMOR_peak_31705 chr20 57205288 57205584 + 17.47374 NA Intergenic Intergenic -4392 NR_125359 79160 Hs.280135 NR_125359 LOC79160 - uncharacterized LOC79160 ncRNA 13-PTNLD9-TUMOR_peak_9350 chr11 26752735 26752926 + 17.47374 NA Intergenic Intergenic -9256 NM_178498 159963 Hs.148907 NM_178498 HPRD:15395 SLC5A12 SMCT2 solute carrier family 5 (sodium/monocarboxylate cotransporter), member 12 protein-coding 13-PTNLD9-TUMOR_peak_22949 chr18 34291862 34292090 + 17.47374 NA intron (NM_001281739, intron 14 of 23) L1MDa|LINE|L1 -117104 NM_020776 57536 Hs.4045 NM_020776 HPRD:17211 KIAA1328 - KIAA1328 protein-coding 13-PTNLD9-TUMOR_peak_49633 chr7 150683267 150683413 + 17.46763 NA Intergenic Intergenic -4804 NM_000603 4846 Hs.647092 NM_000603 HPRD:01224 NOS3 ECNOS|eNOS nitric oxide synthase 3 (endothelial cell) protein-coding 13-PTNLD9-TUMOR_peak_26036 chr2 9304431 9304632 + 17.45727 NA Intergenic MER5B|DNA|hAT-Charlie -42363 NM_001135191 8853 Hs.555902 NM_003887 HPRD:04820 ASAP2 AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 protein-coding 13-PTNLD9-TUMOR_peak_39981 chr4 184908732 184909074 + 17.45181 NA intron (NM_020225, intron 1 of 3) intron (NM_020225, intron 1 of 3) 82394 NM_020225 56977 Hs.21958 NM_020225 HPRD:16823 STOX2 - storkhead box 2 protein-coding 13-PTNLD9-TUMOR_peak_87 chr1 1440753 1441088 + 17.44690 NA Intergenic LTR13|LTR|ERVK -6603 NM_018188 55210 Hs.23413 NM_018188 HPRD:12500 ATAD3A - ATPase family, AAA domain containing 3A protein-coding 13-PTNLD9-TUMOR_peak_4157 chr1 161546555 161546759 + 17.44690 NA Intergenic Intergenic -4472 NM_201563 9103 Hs.656750 NM_201563 FCGR2C CD32|CD32C|CDW32|FCG2|FCRIIC|IGFR2 Fc fragment of IgG, low affinity IIc, receptor for (CD32) (gene/pseudogene) protein-coding 13-PTNLD9-TUMOR_peak_2762 chr1 109841846 109842032 + 17.43757 NA intron (NM_001010985, intron 1 of 8) intron (NM_001010985, intron 1 of 8) 7724 NM_001010985 343263 Hs.443402 NM_001010985 HPRD:17616 MYBPHL - myosin binding protein H-like protein-coding 13-PTNLD9-TUMOR_peak_32363 chr21 41047955 41048367 + 17.43757 NA Intergenic Intergenic 18914 NM_033170 10317 Hs.733638 NM_006057 HPRD:06818 B3GALT5 B3GalT-V|B3GalTx|B3T5|GLCT5|beta-1,3-GalTase 5|beta-3-Gx-T5|beta3Gal-T5 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5 protein-coding 13-PTNLD9-TUMOR_peak_54637 chr9 123492965 123493180 + 17.43757 NA Intergenic Intergenic -16307 NM_001080497 1955 Hs.744903 NM_001080497 ENSG00000106780 MEGF9 EGFL5 multiple EGF-like-domains 9 protein-coding 13-PTNLD9-TUMOR_peak_51012 chr8 59794593 59794826 + 17.43541 NA intron (NM_014729, intron 3 of 8) intron (NM_014729, intron 3 of 8) -222305 NM_003580 8439 Hs.372000 NM_003580 HPRD:09117 NSMAF FAN neutral sphingomyelinase (N-SMase) activation associated factor protein-coding 13-PTNLD9-TUMOR_peak_44991 chr6 41725776 41726015 + 17.43541 NA Intergenic Tigger3a|DNA|TcMar-Tigger -10756 NM_002630 5225 Hs.1867 NM_002630 HPRD:01357 PGC PEPC|PGII progastricsin (pepsinogen C) protein-coding 13-PTNLD9-TUMOR_peak_51709 chr8 119345139 119345361 + 17.43541 NA intron (NR_109794, intron 4 of 4) L2b|LINE|L2 -221192 NM_000127 2131 Hs.492618 NM_000127 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_38090 chr4 23023625 23023903 + 17.43541 NA Intergenic MamGypLTR1a|LTR|Gypsy 308052 NM_001277225 57733 Hs.653107 NM_020973 HPRD:09428 GBA3 CBG|CBGL1|GLUC|KLRP glucosidase, beta, acid 3 protein-coding 13-PTNLD9-TUMOR_peak_40400 chr5 15327141 15327335 + 17.43541 NA Intergenic Intergenic -60569 NR_109944 101929454 Hs.453273 NR_109944 LOC101929454 - uncharacterized LOC101929454 ncRNA 13-PTNLD9-TUMOR_peak_15088 chr13 109909290 109909707 + 17.43541 NA Intergenic Intergenic -89847 NR_047700 100885782 Hs.655942 NR_047700 ENSG00000236242 MYO16-AS1 - MYO16 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_6714 chr10 24907406 24907597 + 17.43541 NA intron (NM_020824, intron 9 of 25) L2a|LINE|L2 105096 NM_020824 57584 Hs.524195 NM_020824 HPRD:06445 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 13-PTNLD9-TUMOR_peak_27629 chr2 92004405 92004527 + 17.43485 NA Intergenic Intergenic 41098 NR_003503 645367 Hs.650223 NR_003503 GGT8P GGT1P1 gamma-glutamyltransferase 8 pseudogene pseudo 13-PTNLD9-TUMOR_peak_44807 chr6 36351506 36351675 + 17.42789 NA intron (NM_001207040, intron 1 of 6) intron (NM_001207040, intron 1 of 6) 3978 NM_001207038 51513 Hs.272398 NM_016135 HPRD:16095 ETV7 TEL-2|TEL2|TELB ets variant 7 protein-coding 13-PTNLD9-TUMOR_peak_34757 chr3 57955528 57955875 + 17.42789 NA Intergenic Intergenic -38426 NM_001457 2317 Hs.476448 NM_001457 HPRD:04543 FLNB ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP filamin B, beta protein-coding 13-PTNLD9-TUMOR_peak_50399 chr8 26308742 26309427 + 17.42609 NA Intergenic Intergenic 62399 NM_007257 10687 Hs.591838 NM_007257 ENSG00000240694 PNMA2 MA2|MM2|RGAG2 paraneoplastic Ma antigen 2 protein-coding 13-PTNLD9-TUMOR_peak_51079 chr8 67437544 67437821 + 17.42609 NA Intergenic Intergenic 32191 NM_152765 254778 Hs.268869 NM_152765 HPRD:14565 C8orf46 - chromosome 8 open reading frame 46 protein-coding 13-PTNLD9-TUMOR_peak_22616 chr18 11947373 11947568 + 17.42039 NA Intergenic Intergenic -33957 NM_014214 3613 Hs.743311 NM_014214 HPRD:09329 IMPA2 - inositol(myo)-1(or 4)-monophosphatase 2 protein-coding 13-PTNLD9-TUMOR_peak_42989 chr5 171023473 171023850 + 17.42039 NA Intergenic Intergenic 176994 NM_003862 8817 Hs.87191 NM_003862 HPRD:04766 FGF18 FGF-18|ZFGF5 fibroblast growth factor 18 protein-coding 13-PTNLD9-TUMOR_peak_41888 chr5 123737702 123738254 + 17.40891 NA intron (NR_125774, intron 3 of 5) intron (NR_125774, intron 3 of 5) 36235 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 13-PTNLD9-TUMOR_peak_45643 chr6 86070951 86071364 + 17.40891 NA Intergenic Intergenic -88145 NM_001204813 4907 Hs.153952 NM_002526 HPRD:00552 NT5E CALJA|CD73|E5NT|NT|NT5|NTE|eN|eNT 5'-nucleotidase, ecto (CD73) protein-coding 13-PTNLD9-TUMOR_peak_22721 chr18 19252937 19253137 + 17.40891 NA intron (NM_138340, intron 4 of 8) intron (NM_138340, intron 4 of 8) -10434 NR_031565 100302135 NR_031565 miRBase:MI0003778 MIR320C1 MIR320C-1|MIRN320C1|hsa-mir-320c-1 microRNA 320c-1 ncRNA 13-PTNLD9-TUMOR_peak_39640 chr4 152461933 152462223 + 17.40891 NA intron (NM_001109977, intron 3 of 13) intron (NM_001109977, intron 3 of 13) 131680 NM_001109977 729830 Hs.633810 NM_001109977 ENSG00000164142 FAM160A1 - family with sequence similarity 160, member A1 protein-coding 13-PTNLD9-TUMOR_peak_36526 chr3 157217578 157217746 + 17.40567 NA promoter-TSS (NM_024621) promoter-TSS (NM_024621) -217 NM_024621 79674 Hs.658046 NM_024621 HPRD:07782 VEPH1 MELT|VEPH ventricular zone expressed PH domain-containing 1 protein-coding 13-PTNLD9-TUMOR_peak_46720 chr7 2562620 2562982 + 17.39669 NA intron (NM_001040167, intron 1 of 7) intron (NM_001040167, intron 1 of 7) 3322 NM_001040168 3955 Hs.159142 NM_002304 ENSG00000106003 LFNG SCDO3 LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase protein-coding 13-PTNLD9-TUMOR_peak_47898 chr7 73263758 73264035 + 17.39280 NA Intergenic L2b|LINE|L2 -7041 NM_152559 155368 Hs.647042 NM_152559 HPRD:15661 WBSCR27 - Williams Beuren syndrome chromosome region 27 protein-coding 13-PTNLD9-TUMOR_peak_27491 chr2 87064511 87064681 + 17.39277 NA intron (NM_172101, intron 5 of 6) intron (NM_172101, intron 5 of 6) -24352 NR_037931 100286979 Hs.731217 NR_037931 ANAPC1P1 - anaphase promoting complex subunit 1 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_31736 chr20 58509135 58509302 + 17.39277 NA intron (NM_001190826, intron 1 of 4) CpG 399 NM_001190826 63939 Hs.54973 NM_022106 HPRD:12758 FAM217B C20orf177|dJ551D2.5 family with sequence similarity 217, member B protein-coding 13-PTNLD9-TUMOR_peak_34344 chr3 42531851 42532073 + 17.39277 NA intron (NM_001251882, intron 1 of 13) intron (NM_001251882, intron 1 of 13) 1171 NM_001251882 7433 Hs.348500 NM_004624 HPRD:01890 VIPR1 HVR1|II|PACAP-R-2|PACAP-R2|RDC1|V1RG|VAPC1|VIP-R-1|VIPR|VIRG|VPAC1|VPAC1R|VPCAP1R vasoactive intestinal peptide receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_35946 chr3 132065997 132066472 + 17.39277 NA intron (NM_001292037, intron 6 of 8) intron (NM_001292037, intron 6 of 8) 30023 NM_001134194 55 Hs.433060 NM_001099 HPRD:01378 ACPP 5'-NT|ACP-3|ACP3 acid phosphatase, prostate protein-coding 13-PTNLD9-TUMOR_peak_51076 chr8 67424547 67424795 + 17.39277 NA intron (NM_152765, intron 4 of 5) intron (NM_152765, intron 4 of 5) 19180 NM_152765 254778 Hs.268869 NM_152765 HPRD:14565 C8orf46 - chromosome 8 open reading frame 46 protein-coding 13-PTNLD9-TUMOR_peak_34047 chr3 22755527 22755711 + 17.39277 NA Intergenic MER44B|DNA|TcMar-Tigger -489165 NM_152653 7325 Hs.475688 NM_152653 UBE2E2 UBCH8 ubiquitin-conjugating enzyme E2E 2 protein-coding 13-PTNLD9-TUMOR_peak_15105 chr13 110699971 110700229 + 17.39277 NA Intergenic Intergenic 259396 NM_001845 1282 Hs.17441 NM_001845 HPRD:00359 COL4A1 HANAC|ICH|POREN1|arresten collagen, type IV, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_11158 chr11 109817067 109817279 + 17.39277 NA Intergenic Intergenic -146914 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 13-PTNLD9-TUMOR_peak_41514 chr5 90679124 90679412 + 17.38554 NA promoter-TSS (NM_020801) promoter-TSS (NM_020801) -119 NM_020801 57561 Hs.24684 NM_020801 HPRD:09810 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_3633 chr1 151583764 151584036 + 17.38458 NA promoter-TSS (NM_030918) promoter-TSS (NM_030918) -762 NM_030918 81609 Hs.192326 NM_030918 HPRD:11591 SNX27 MRT1|MY014 sorting nexin family member 27 protein-coding 13-PTNLD9-TUMOR_peak_25199 chr19 47165323 47165520 + 17.38458 NA non-coding (NR_040041, exon 1 of 3) non-coding (NR_040041, exon 1 of 3) 686 NR_040041 100506068 Hs.434327 NR_040041 ENSG00000245598 DACT3-AS1 - DACT3 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_4424 chr1 172903069 172903325 + 17.38327 NA Intergenic Intergenic 116906 NM_005092 8995 Hs.248197 NM_005092 TNFSF18 AITRL|GITRL|TL6|hGITRL tumor necrosis factor (ligand) superfamily, member 18 protein-coding 13-PTNLD9-TUMOR_peak_33634 chr3 8218579 8218736 + 17.38327 NA Intergenic Intergenic -160663 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 13-PTNLD9-TUMOR_peak_43066 chr5 172882201 172882532 + 17.37750 NA Intergenic MLT1F1|LTR|ERVL-MaLR 107908 NR_107023 102465862 NR_107023 MIR8056 hsa-mir-8056 microRNA 8056 ncRNA 13-PTNLD9-TUMOR_peak_28224 chr2 119747120 119747335 + 17.37750 NA intron (NM_006770, intron 12 of 16) intron (NM_006770, intron 12 of 16) 47482 NM_006770 8685 Hs.67726 NM_006770 HPRD:05337 MARCO SCARA2 macrophage receptor with collagenous structure protein-coding 13-PTNLD9-TUMOR_peak_27998 chr2 110679683 110679953 + 17.37359 NA intron (NR_027145, intron 8 of 17).2 intron (NR_027145, intron 8 of 17).2 23809 NM_033514 96626 Hs.535619 NM_033514 HPRD:17277 LIMS3 PINCH-3 LIM and senescent cell antigen-like domains 3 protein-coding 13-PTNLD9-TUMOR_peak_50736 chr8 42079083 42079332 + 17.37359 NA Intergenic MIRb|SINE|MIR -14013 NM_000930 5327 Hs.491582 NM_000930 HPRD:01419 PLAT T-PA|TPA plasminogen activator, tissue protein-coding 13-PTNLD9-TUMOR_peak_42160 chr5 134715105 134715300 + 17.37359 NA intron (NM_001040158, intron 2 of 8) intron (NM_001040158, intron 2 of 8) 19726 NM_138610 9555 Hs.420272 NM_004893 HPRD:13624 H2AFY H2A.y|H2A/y|H2AF12M|H2AFJ|MACROH2A1.1|mH2A1|macroH2A1.2 H2A histone family, member Y protein-coding 13-PTNLD9-TUMOR_peak_40200 chr5 1645053 1645295 + 17.37359 NA Intergenic CpG -11054 NR_003713 728613 Hs.720393 NR_003713 LOC728613 - programmed cell death 6 pseudogene pseudo 13-PTNLD9-TUMOR_peak_33603 chr3 5065026 5065354 + 17.37055 NA Intergenic Intergenic 44093 NM_003670 8553 Hs.744856 NM_003670 HPRD:16050 BHLHE40 BHLHB2|DEC1|HLHB2|SHARP-2|STRA13|Stra14 basic helix-loop-helix family, member e40 protein-coding 13-PTNLD9-TUMOR_peak_33727 chr3 10234672 10234978 + 17.37055 NA intron (NM_001570, intron 2 of 12) intron (NM_001570, intron 2 of 12) 28262 NM_001570 3656 Hs.449207 NM_001570 HPRD:04491 IRAK2 IRAK-2 interleukin-1 receptor-associated kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_33872 chr3 14167079 14167556 + 17.36723 NA promoter-TSS (NM_001098502) promoter-TSS (NM_001098502) 877 NM_024334 79188 Hs.517817 NM_024334 HPRD:15541 TMEM43 ARVC5|ARVD5|EDMD7|LUMA transmembrane protein 43 protein-coding 13-PTNLD9-TUMOR_peak_21871 chr17 66581862 66582217 + 17.36502 NA intron (NM_017565, intron 1 of 10) intron (NM_017565, intron 1 of 10) 15056 NM_001243746 54757 Hs.268874 NM_017565 FAM20A AI1G|AIGFS|FP2747 family with sequence similarity 20, member A protein-coding 13-PTNLD9-TUMOR_peak_28563 chr2 135883161 135883330 + 17.36502 NA intron (NM_001172435, intron 9 of 24) MER44B|DNA|TcMar-Tigger 73410 NM_001172435 22930 Hs.306327 NM_012233 HPRD:16002 RAB3GAP1 P130|RAB3GAP|RAB3GAP130|WARBM1 RAB3 GTPase activating protein subunit 1 (catalytic) protein-coding 13-PTNLD9-TUMOR_peak_26070 chr2 9960238 9960460 + 17.36502 NA Intergenic Intergenic -23222 NM_005680 9014 Hs.584833 NM_005680 HPRD:05363 TAF1B MGC:9349|RAF1B|RAFI63|SL1|TAFI63 TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa protein-coding 13-PTNLD9-TUMOR_peak_860 chr1 28668187 28668385 + 17.34457 NA Intergenic AluJr4|SINE|Alu 12773 NM_017638 54797 Hs.479911 NM_017638 HPRD:17476 MED18 p28b mediator complex subunit 18 protein-coding 13-PTNLD9-TUMOR_peak_52983 chr9 31304611 31304928 + 17.34457 NA Intergenic MIRb|SINE|MIR -896317 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 13-PTNLD9-TUMOR_peak_9055 chr11 11200361 11200530 + 17.34457 NA Intergenic Intergenic 174459 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2, alpha 3 polypeptide protein-coding 13-PTNLD9-TUMOR_peak_34705 chr3 54893315 54893553 + 17.34457 NA intron (NM_018398, intron 17 of 37) intron (NM_018398, intron 17 of 37) 41848 NR_046666 100874237 Hs.570583 NR_046666 ENSG00000243715 CACNA2D3-AS1 - CACNA2D3 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_19308 chr16 50300370 50300639 + 17.34457 NA promoter-TSS (NM_001286057) promoter-TSS (NM_001286057) 53 NM_001286057 113 Hs.513578 NM_001114 HPRD:02663 ADCY7 AC7 adenylate cyclase 7 protein-coding 13-PTNLD9-TUMOR_peak_7647 chr10 72409461 72409601 + 17.34457 NA Intergenic HERVL18-int|LTR|ERVL -23028 NM_139155 140766 Hs.352156 NM_080722 HPRD:06329 ADAMTS14 - ADAM metallopeptidase with thrombospondin type 1 motif, 14 protein-coding 13-PTNLD9-TUMOR_peak_12835 chr12 52783213 52783755 + 17.34457 NA Intergenic Intergenic -4067 NM_033045 3890 Hs.272336 NM_033045 HPRD:09098 KRT84 HB4|KRTHB4 keratin 84 protein-coding 13-PTNLD9-TUMOR_peak_37855 chr4 7958092 7958288 + 17.33549 NA Intergenic Intergenic -16537 NM_001134647 60312 Hs.529369 NM_021638 HPRD:09747 AFAP1 AFAP|AFAP-110|AFAP110 actin filament associated protein 1 protein-coding 13-PTNLD9-TUMOR_peak_21452 chr17 48356618 48356799 + 17.33377 NA 3' UTR (NM_153229, exon 5 of 5) 3' UTR (NM_153229, exon 5 of 5) 4920 NM_153229 162461 Hs.224630 NM_153229 HPRD:08743 TMEM92 - transmembrane protein 92 protein-coding 13-PTNLD9-TUMOR_peak_4636 chr1 181122108 181122281 + 17.33377 NA Intergenic Intergenic 64556 NM_016545 51278 Hs.15725 NM_016545 HPRD:06210 IER5 SBBI48 immediate early response 5 protein-coding 13-PTNLD9-TUMOR_peak_11177 chr11 110779503 110779756 + 17.33377 NA Intergenic Intergenic -195717 NM_001258418 57569 Hs.6136 NM_020809 HPRD:10657 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 13-PTNLD9-TUMOR_peak_52621 chr9 1978971 1979151 + 17.32902 NA Intergenic Intergenic -36158 NM_003070 6595 Hs.298990 NM_003070 HPRD:02483 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 13-PTNLD9-TUMOR_peak_19779 chr16 75510811 75511047 + 17.32902 NA 3' UTR (NM_021615, exon 3 of 3) 3' UTR (NM_021615, exon 3 of 3) -12345 NM_145254 124491 Hs.487510 NM_145254 HPRD:14027 TMEM170A TMEM170 transmembrane protein 170A protein-coding 13-PTNLD9-TUMOR_peak_51440 chr8 102171173 102171393 + 17.32755 NA Intergenic L2c|LINE|L2 46677 NM_001267708 51123 Hs.374485 NM_016096 HPRD:13688 ZNF706 PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 13-PTNLD9-TUMOR_peak_39578 chr4 148499889 148500059 + 17.32755 NA Intergenic AluJb|SINE|Alu -38565 NM_018241 55751 Hs.203896 NM_018241 TMEM184C TMEM34 transmembrane protein 184C protein-coding 13-PTNLD9-TUMOR_peak_17517 chr15 68564324 68564592 + 17.32755 NA Intergenic Intergenic -5683 NM_015322 10116 Hs.362733 NM_015322 FEM1B F1A-ALPHA|F1AA|FEM1-beta fem-1 homolog b (C. elegans) protein-coding 13-PTNLD9-TUMOR_peak_37254 chr3 192543523 192543884 + 17.32755 NA intron (NM_178496, intron 1 of 1) intron (NM_178496, intron 1 of 1) 92247 NM_178496 151963 Hs.151443 NM_178496 HPRD:14092 MB21D2 C3orf59 Mab-21 domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_45223 chr6 47012253 47012428 + 17.32727 NA Intergenic Intergenic -2258 NM_153840 266977 Hs.733762 NM_025048 HPRD:08661 GPR110 KPG_012|PGR19|hGPCR36 G protein-coupled receptor 110 protein-coding 13-PTNLD9-TUMOR_peak_2164 chr1 68850121 68850423 + 17.32727 NA Intergenic Intergenic 65370 NM_000329 6121 Hs.2133 NM_000329 HPRD:01569 RPE65 BCO3|LCA2|RP20|mRPE65|rd12|sRPE65 retinal pigment epithelium-specific protein 65kDa protein-coding 13-PTNLD9-TUMOR_peak_54827 chr9 130727873 130728116 + 17.32663 NA intron (NM_001035254, intron 1 of 10) intron (NM_001035254, intron 1 of 10) 14818 NM_001035254 399665 Hs.535972 NM_203305 HPRD:13262 FAM102A C9orf132|EEIG1|SYM-3A|bA203J24.7 family with sequence similarity 102, member A protein-coding 13-PTNLD9-TUMOR_peak_10485 chr11 70328303 70328903 + 17.32663 NA intron (NR_110766, intron 8 of 8) MIR|SINE|MIR 83991 NM_138565 2017 Hs.596164 NM_005231 HPRD:01268 CTTN EMS1 cortactin protein-coding 13-PTNLD9-TUMOR_peak_48413 chr7 97763002 97763252 + 17.32663 NA intron (NM_014916, intron 1 of 13) intron (NM_014916, intron 1 of 13) 26930 NM_014916 22853 Hs.444179 NM_014916 HPRD:13994 LMTK2 AATYK2|BREK|KPI-2|KPI2|LMR2|PPP1R100|cprk lemur tyrosine kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_31204 chr20 44462178 44462560 + 17.32663 NA promoter-TSS (NM_033421) promoter-TSS (NM_033421) -101 NM_152897 90203 Hs.472854 NM_033421 SNX21 C20orf161|PP3993|SNX-L|dJ337O18.4 sorting nexin family member 21 protein-coding 13-PTNLD9-TUMOR_peak_49289 chr7 137625481 137625868 + 17.31989 NA intron (NM_194071, intron 1 of 11) intron (NM_194071, intron 1 of 11) -12420 NM_001243523 100130880 Hs.712161 NM_001243523 LOC100130880 - uncharacterized LOC100130880 protein-coding 13-PTNLD9-TUMOR_peak_45317 chr6 52926549 52926794 + 17.30130 NA promoter-TSS (NM_016513) promoter-TSS (NM_016513) -71 NM_014920 22858 Hs.417022 NM_014920 HPRD:09996 ICK ECO|LCK2|MRK intestinal cell (MAK-like) kinase protein-coding 13-PTNLD9-TUMOR_peak_52390 chr8 143781272 143781467 + 17.29433 NA promoter-TSS (NM_001160355) promoter-TSS (NM_001160355) -160 NM_001160354 54742 Hs.69517 NM_017527 LY6K CT97|HSJ001348|ly-6K lymphocyte antigen 6 complex, locus K protein-coding 13-PTNLD9-TUMOR_peak_38910 chr4 95469766 95470091 + 17.29433 NA intron (NM_001011513, intron 3 of 12) intron (NM_001011513, intron 3 of 12) 96920 NM_001011515 10611 Hs.480311 NM_006457 HPRD:05799 PDLIM5 ENH|ENH1|LIM PDZ and LIM domain 5 protein-coding 13-PTNLD9-TUMOR_peak_28920 chr2 162770428 162770615 + 17.29433 NA intron (NM_001178015, intron 15 of 26) intron (NM_001178015, intron 15 of 26) 160531 NM_001935 1803 Hs.368912 NM_001935 HPRD:02187 DPP4 ADABP|ADCP2|CD26|DPPIV|TP103 dipeptidyl-peptidase 4 protein-coding 13-PTNLD9-TUMOR_peak_22563 chr18 9838507 9838797 + 17.29433 NA intron (NM_006868, intron 5 of 6) intron (NM_006868, intron 5 of 6) -47071 NM_032243 84203 Hs.98712 NM_032243 HPRD:11654 TXNDC2 SPTRX|SPTRX1 thioredoxin domain containing 2 (spermatozoa) protein-coding 13-PTNLD9-TUMOR_peak_21757 chr17 62172879 62173121 + 17.29433 NA intron (NM_001433, intron 2 of 21) intron (NM_001433, intron 2 of 21) 34502 NM_001433 2081 Hs.133982 NM_001433 HPRD:04943 ERN1 IRE1|IRE1P|IRE1a|hIRE1p endoplasmic reticulum to nucleus signaling 1 protein-coding 13-PTNLD9-TUMOR_peak_54574 chr9 118378185 118378498 + 17.29433 NA Intergenic Intergenic 128177 NR_109805 101928775 Hs.522362 NR_109805 LOC101928775 - uncharacterized LOC101928775 ncRNA 13-PTNLD9-TUMOR_peak_14054 chr12 120926923 120927243 + 17.29433 NA intron (NM_001037494, intron 1 of 2) L2a|LINE|L2 6666 NR_038854 100506668 Hs.660080 NR_038854 ENSG00000248008 DYNLL1-AS1 - DYNLL1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_17315 chr15 54127621 54127841 + 17.29433 NA Intergenic Intergenic -72656 NR_102334 256764 Hs.122125 NM_182758 HPRD:10987 WDR72 AI2A3 WD repeat domain 72 protein-coding 13-PTNLD9-TUMOR_peak_50293 chr8 22442396 22442657 + 17.28676 NA intron (NM_176871, intron 3 of 9) intron (NM_176871, intron 3 of 9) 4539 NM_176871 64236 Hs.632034 NM_021630 HPRD:17831 PDLIM2 MYSTIQUE|SLIM PDZ and LIM domain 2 (mystique) protein-coding 13-PTNLD9-TUMOR_peak_53282 chr9 41819619 41819770 + 17.28197 NA Intergenic Intergenic 135382 NR_015363 389741 Hs.380240 NM_203448 GLIDR LINC01172 glioblastoma down-regulated RNA ncRNA 13-PTNLD9-TUMOR_peak_48315 chr7 92395166 92395389 + 17.28197 NA intron (NM_001259, intron 3 of 7) L2a|LINE|L2 67954 NM_001259 1021 Hs.119882 NM_001259 HPRD:04533 CDK6 PLSTIRE cyclin-dependent kinase 6 protein-coding 13-PTNLD9-TUMOR_peak_14746 chr13 49656859 49657094 + 17.28058 NA intron (NR_103528, intron 3 of 25) intron (NR_103528, intron 3 of 25) -27463 NM_014923 22862 Hs.508010 NM_014923 HPRD:13548 FNDC3A FNDC3|HUGO|bA203I16.1|bA203I16.5 fibronectin type III domain containing 3A protein-coding 13-PTNLD9-TUMOR_peak_37790 chr4 6734421 6734682 + 17.28058 NA Intergenic Intergenic 16709 NM_018366 55330 Hs.7570 NM_018366 HPRD:12035 BLOC1S4 BCAS4L|BLOS4|CNO biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino protein-coding 13-PTNLD9-TUMOR_peak_14590 chr13 36429782 36430063 + 17.28058 NA promoter-TSS (NM_001195415) promoter-TSS (NM_001195415) 76 NM_001195416 9201 Hs.507755 NM_004734 DCLK1 CL1|CLICK1|DCAMKL1|DCDC3A|DCLK doublecortin-like kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_8627 chr10 131330132 131330324 + 17.28058 NA intron (NM_002412, intron 1 of 4) intron (NM_002412, intron 1 of 4) 64774 NM_002412 4255 Hs.501522 NM_002412 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 13-PTNLD9-TUMOR_peak_22131 chr17 75838848 75838977 + 17.28058 NA Intergenic MIR|SINE|MIR 41257 NR_028337 400624 Hs.514521 NM_001001685 FLJ45079 - FLJ45079 protein ncRNA 13-PTNLD9-TUMOR_peak_11245 chr11 112877803 112877980 + 17.28058 NA intron (NM_181351, intron 2 of 19) intron (NM_181351, intron 2 of 19) -43709 NR_120563 101928847 Hs.711235 NR_120563 ENSG00000247416 LOC101928847 - uncharacterized LOC101928847 ncRNA 13-PTNLD9-TUMOR_peak_1027 chr1 33633113 33633456 + 17.28058 NA intron (NM_018207, intron 1 of 4) intron (NM_018207, intron 1 of 4) 14387 NM_018207 55223 Hs.656006 NM_018207 HPRD:07697 TRIM62 DEAR1 tripartite motif containing 62 protein-coding 13-PTNLD9-TUMOR_peak_14419 chr13 23402350 23402500 + 17.28058 NA Intergenic AluJo|SINE|Alu 69895 NR_033774 646201 Hs.729338 NR_033774 BASP1P1 - brain abundant, membrane attached signal protein 1 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_28336 chr2 123401400 123401674 + 17.28058 NA Intergenic Intergenic 888416 NR_048557 7247 Hs.75066 NM_004622 HPRD:08993 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 13-PTNLD9-TUMOR_peak_45470 chr6 71891315 71891464 + 17.28058 NA Intergenic L2c|LINE|L2 -107088 NM_024576 79627 Hs.648434 NM_024576 OGFRL1 dJ331H24.1 opioid growth factor receptor-like 1 protein-coding 13-PTNLD9-TUMOR_peak_1053 chr1 34826301 34826577 + 17.28058 NA Intergenic Intergenic 183886 NM_001134734 84970 Hs.194610 NM_032884 HPRD:11310 C1orf94 - chromosome 1 open reading frame 94 protein-coding 13-PTNLD9-TUMOR_peak_6343 chr10 4768278 4768551 + 17.28058 NA Intergenic Intergenic -48152 NR_024475 100216001 Hs.634869 NR_024475 ENSG00000231298 LINC00704 - long intergenic non-protein coding RNA 704 ncRNA 13-PTNLD9-TUMOR_peak_23065 chr18 44212800 44212965 + 17.28058 NA intron (NM_144612, intron 4 of 39) intron (NM_144612, intron 4 of 39) 24114 NM_144612 125336 Hs.345877 NM_144612 HPRD:08316 LOXHD1 DFNB77|LH2D1 lipoxygenase homology domains 1 protein-coding 13-PTNLD9-TUMOR_peak_16160 chr14 69926908 69927102 + 17.28058 NA 3' UTR (NM_001252152, exon 8 of 8) 3' UTR (NM_001252152, exon 8 of 8) -24466 NM_001161498 400224 Hs.509796 NM_001161498 ENSG00000175985 PLEKHD1 UPF0639 pleckstrin homology domain containing, family D (with coiled-coil domains) member 1 protein-coding 13-PTNLD9-TUMOR_peak_50515 chr8 29858393 29858544 + 17.28058 NA Intergenic Intergenic -43604 NR_036104 100422876 NR_036104 miRBase:MI0014175 MIR3148 - microRNA 3148 ncRNA 13-PTNLD9-TUMOR_peak_36511 chr3 156839957 156840112 + 17.28058 NA intron (NR_034007, intron 1 of 3) intron (NR_034007, intron 1 of 3) 757 NR_034007 339894 Hs.478050 NR_034007 ENSG00000243629 LINC00880 - long intergenic non-protein coding RNA 880 ncRNA 13-PTNLD9-TUMOR_peak_42538 chr5 147412826 147413129 + 17.28058 NA Intergenic Intergenic -30558 NM_006846 11005 Hs.331555 NM_006846 HPRD:05423 SPINK5 LEKTI|LETKI|NETS|NS|VAKTI serine peptidase inhibitor, Kazal type 5 protein-coding 13-PTNLD9-TUMOR_peak_56610 chrX 149900422 149900598 + 17.28058 NA intron (NM_003828, intron 8 of 15) intron (NM_003828, intron 8 of 15) 38641 NM_003828 8776 Hs.347187 NM_003828 HPRD:02163 MTMR1 - myotubularin related protein 1 protein-coding 13-PTNLD9-TUMOR_peak_27858 chr2 102133963 102134096 + 17.28058 NA Intergenic Intergenic -42864 NM_001145664 731220 Hs.662488 NM_207403 ENSG00000196460 RFX8 - RFX family member 8, lacking RFX DNA binding domain protein-coding 13-PTNLD9-TUMOR_peak_385 chr1 10815986 10816245 + 17.28058 NA intron (NM_017766, intron 2 of 15) intron (NM_017766, intron 2 of 15) 40618 NM_001079843 54897 Hs.439894 NM_017766 HPRD:07897 CASZ1 CAS11|CST|SRG|ZNF693|dJ734G22.1 castor zinc finger 1 protein-coding 13-PTNLD9-TUMOR_peak_41821 chr5 116631708 116631910 + 17.28058 NA Intergenic Intergenic -119399 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 13-PTNLD9-TUMOR_peak_34036 chr3 21477418 21477568 + 17.28058 NA intron (NM_024697, intron 5 of 7) intron (NM_024697, intron 5 of 7) 30275 NR_002311 391518 Hs.543226 NR_002311 ENSG00000236380 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 13-PTNLD9-TUMOR_peak_48193 chr7 84107201 84107408 + 17.28058 NA Intergenic Intergenic -54488 NR_110080 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 13-PTNLD9-TUMOR_peak_10769 chr11 79848144 79848393 + 17.28058 NA Intergenic L1MB1|LINE|L1 625578 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LOC101928944 - uncharacterized LOC101928944 ncRNA 13-PTNLD9-TUMOR_peak_43899 chr6 14759020 14759212 + 17.28058 NA Intergenic Intergenic -473431 NR_108096 102216342 Hs.563409 NR_108096 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 13-PTNLD9-TUMOR_peak_30978 chr20 36672403 36672570 + 17.28058 NA intron (NM_021215, intron 2 of 6) MER68|LTR|ERVL 10538 NM_021215 58490 Hs.278839 NM_021215 HPRD:08513 RPRD1B C20orf77|CREPT|NET60|dJ1057B20.2 regulation of nuclear pre-mRNA domain containing 1B protein-coding 13-PTNLD9-TUMOR_peak_462 chr1 12782780 12782936 + 17.28058 NA intron (NM_001103170, intron 3 of 3) MER6|DNA|TcMar-Tigger 6740 NR_111984 126767 Hs.464705 NM_001103169 ENSG00000188984 AADACL3 - arylacetamide deacetylase-like 3 protein-coding 13-PTNLD9-TUMOR_peak_52762 chr9 13942847 13943034 + 17.28058 NA intron (NR_038194, intron 1 of 2) MER44B|DNA|TcMar-Tigger 14970 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA 13-PTNLD9-TUMOR_peak_16183 chr14 70527937 70528128 + 17.28058 NA intron (NM_183002, intron 2 of 7) intron (NM_183002, intron 2 of 7) 18902 NM_182936 6547 Hs.337696 NM_033262 HPRD:09723 SLC8A3 NCX3 solute carrier family 8 (sodium/calcium exchanger), member 3 protein-coding 13-PTNLD9-TUMOR_peak_31951 chr21 15906241 15906520 + 17.28058 NA intron (NM_001286523, intron 1 of 8) intron (NM_001286523, intron 1 of 8) 12301 NM_001286523 64092 Hs.473341 NM_022136 HPRD:06413 SAMSN1 HACS1|NASH1|SASH2|SH3D6B|SLy2 SAM domain, SH3 domain and nuclear localization signals 1 protein-coding 13-PTNLD9-TUMOR_peak_46468 chr6 161695033 161695258 + 17.28058 NA promoter-TSS (NM_020133) promoter-TSS (NM_020133) -38 NM_020133 56895 Hs.353175 NM_020133 HPRD:12437 AGPAT4 1-AGPAT4|LPAAT-delta|dJ473J16.2 1-acylglycerol-3-phosphate O-acyltransferase 4 protein-coding 13-PTNLD9-TUMOR_peak_8512 chr10 124108117 124108289 + 17.28058 NA Intergenic Intergenic -25891 NM_001001974 59338 Hs.643512 NM_021622 HPRD:09686 PLEKHA1 TAPP1 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1 protein-coding 13-PTNLD9-TUMOR_peak_41720 chr5 110638356 110638540 + 17.28058 NA intron (NM_001744, intron 1 of 10) L1HS|LINE|L1 78501 NM_001744 814 Hs.591269 NM_001744 CAMK4 CaMK IV|CaMK-GR|IV|caMK calcium/calmodulin-dependent protein kinase IV protein-coding 13-PTNLD9-TUMOR_peak_47797 chr7 68969827 68970018 + 17.28058 NA Intergenic Intergenic 92559 NR_108105 100507468 Hs.362492 NR_108105 LOC100507468 - uncharacterized LOC100507468 ncRNA 13-PTNLD9-TUMOR_peak_44829 chr6 36734055 36734173 + 17.28058 NA intron (NM_020939, intron 10 of 20) intron (NM_020939, intron 10 of 20) 68486 NM_001257357 401258 Hs.485258 NM_207498 RAB44 RASD3|RASL13|dJ431A14.3 RAB44, member RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_5777 chr1 229851917 229852250 + 17.28058 NA Intergenic LTR78B|LTR|ERV1 90102 NM_014777 9816 Hs.533628 NM_014777 HPRD:17178 URB2 KIAA0133|NET10|NPA2 URB2 ribosome biogenesis 2 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_9582 chr11 38111324 38111652 + 17.28058 NA Intergenic MER11A|LTR|ERVK 556418 NR_120555 103312105 Hs.641711 NR_120554 LOC103312105 - uncharacterized LOC103312105 ncRNA 13-PTNLD9-TUMOR_peak_54408 chr9 112528706 112528949 + 17.28058 NA intron (NM_001037293, intron 1 of 6) intron (NM_001037293, intron 1 of 6) -13750 NM_147150 445815 Hs.591908 NM_007203 HPRD:09197 PALM2-AKAP2 AKAP2 PALM2-AKAP2 readthrough protein-coding 13-PTNLD9-TUMOR_peak_12627 chr12 45809211 45809473 + 17.28058 NA intron (NM_001142678, intron 16 of 19) intron (NM_001142678, intron 16 of 19) 122876 NM_001142678 196527 Hs.505339 NM_001025356 HPRD:18746 ANO6 BDPLT7|SCTS|TMEM16F anoctamin 6 protein-coding 13-PTNLD9-TUMOR_peak_32336 chr21 40338057 40338250 + 17.28058 NA Intergenic Intergenic 11547 NR_109962 101928435 Hs.385528 NR_109962 ENSG00000232837 LOC101928435 - uncharacterized LOC101928435 ncRNA 13-PTNLD9-TUMOR_peak_38578 chr4 74563886 74564214 + 17.28058 NA Intergenic Intergenic -42173 NM_000584 3576 Hs.624 NM_000584 HPRD:00909 CXCL8 GCP-1|GCP1|IL8|LECT|LUCT|LYNAP|MDNCF|MONAP|NAF|NAP-1|NAP1 chemokine (C-X-C motif) ligand 8 protein-coding 13-PTNLD9-TUMOR_peak_39299 chr4 127771492 127771799 + 17.28058 NA Intergenic Intergenic -782442 NM_015693 27152 Hs.391481 NM_015693 INTU INT|PDZD6|PDZK6 inturned planar cell polarity protein protein-coding 13-PTNLD9-TUMOR_peak_51524 chr8 105155740 105156135 + 17.28058 NA intron (NM_001100117, intron 19 of 23) intron (NM_001100117, intron 19 of 23) -79626 NM_001282882 9699 Hs.655271 NM_014677 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 13-PTNLD9-TUMOR_peak_28957 chr2 165245076 165245307 + 17.28058 NA Intergenic Intergenic 233169 NM_004490 2888 Hs.411881 NM_004490 HPRD:03313 GRB14 - growth factor receptor-bound protein 14 protein-coding 13-PTNLD9-TUMOR_peak_28513 chr2 133218453 133218682 + 17.28058 NA intron (NM_001508, intron 1 of 1) intron (NM_001508, intron 1 of 1) 44420 NM_001508 2863 Hs.432395 NM_001508 HPRD:04198 GPR39 - G protein-coupled receptor 39 protein-coding 13-PTNLD9-TUMOR_peak_30099 chr2 237407057 237407326 + 17.28058 NA intron (NM_001270584, intron 1 of 17) LTR33|LTR|ERVL 5149 NM_001270585 79781 Hs.591594 NM_024726 HPRD:13743 IQCA1 4930465P12Rik|DRC11|IQCA IQ motif containing with AAA domain 1 protein-coding 13-PTNLD9-TUMOR_peak_6767 chr10 28580811 28580961 + 17.28058 NA Intergenic Tigger3b|DNA|TcMar-Tigger -2607 NR_107053 102465880 NR_107053 MIR8086 hsa-mir-8086 microRNA 8086 ncRNA 13-PTNLD9-TUMOR_peak_35629 chr3 124223440 124223609 + 17.28058 NA intron (NM_001024660, intron 33 of 59) intron (NM_001024660, intron 33 of 59) -79982 NM_007064 8997 Hs.8004 NM_003947 HPRD:06859 KALRN ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD kalirin, RhoGEF kinase protein-coding 13-PTNLD9-TUMOR_peak_12050 chr12 7592499 7592915 + 17.28058 NA intron (NM_001297650, intron 2 of 19) CpG 4074 NM_174941 283316 Hs.631727 NM_174941 HPRD:07301 CD163L1 CD163B|M160 CD163 molecule-like 1 protein-coding 13-PTNLD9-TUMOR_peak_38020 chr4 14858051 14858350 + 17.28058 NA Intergenic Intergenic 145469 NR_038857 441009 Hs.535004 NR_038857 ENSG00000247624 CPEB2-AS1 - CPEB2 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_8426 chr10 119368706 119368862 + 17.28058 NA Intergenic Intergenic -64205 NR_002791 196047 Hs.312592 NR_002791 EMX2OS EMX2-AS1|NCRNA00045 EMX2 opposite strand/antisense RNA ncRNA 13-PTNLD9-TUMOR_peak_26109 chr2 10794212 10794426 + 17.28058 NA intron (NR_048552, intron 11 of 19) intron (NR_048552, intron 11 of 19) 35794 NM_024894 79954 Hs.222494 NM_024894 HPRD:07849 NOL10 PQBP5 nucleolar protein 10 protein-coding 13-PTNLD9-TUMOR_peak_31961 chr21 17011569 17011752 + 17.28058 NA Intergenic Intergenic -90684 NM_013396 29761 Hs.743994 NM_013396 HPRD:05296 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 13-PTNLD9-TUMOR_peak_38289 chr4 48956873 48957077 + 17.28058 NA Intergenic MER41C|LTR|ERV1 -31290 NM_025087 80157 Hs.479703 NM_025087 HPRD:08638 CWH43 CWH43-C cell wall biogenesis 43 C-terminal homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_45183 chr6 45759432 45759696 + 17.28058 NA Intergenic Intergenic 145770 NR_045674 53405 Hs.485489 NM_016929 HPRD:06292 CLIC5 MST130|MSTP130 chloride intracellular channel 5 protein-coding 13-PTNLD9-TUMOR_peak_21691 chr17 59568065 59568260 + 17.28058 NA Intergenic Intergenic 34355 NM_018488 9496 Hs.143907 NM_018488 HPRD:03424 TBX4 SPS T-box 4 protein-coding 13-PTNLD9-TUMOR_peak_7898 chr10 84741950 84742232 + 17.28058 NA intron (NM_001010848, intron 8 of 8) intron (NM_001010848, intron 8 of 8) -749415 NR_120666 101929590 Hs.733268 NR_120666 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_32229 chr21 36570376 36570667 + 17.28058 NA Intergenic Intergenic -148926 NM_001754 861 Hs.149261 NM_001754 HPRD:01043 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBFA2|EVI-1|PEBP2aB runt-related transcription factor 1 protein-coding 13-PTNLD9-TUMOR_peak_19964 chr16 85052528 85052984 + 17.28058 NA Intergenic L2a|LINE|L2 -7615 NM_001145548 55625 Hs.461610 NM_017740 HPRD:15722 ZDHHC7 DHHC7|SERZ-B|SERZ1|ZNF370 zinc finger, DHHC-type containing 7 protein-coding 13-PTNLD9-TUMOR_peak_34701 chr3 54313075 54313385 + 17.28058 NA intron (NM_018398, intron 2 of 37) intron (NM_018398, intron 2 of 37) 156537 NM_018398 55799 Hs.656687 NM_018398 HPRD:05907 CACNA2D3 HSA272268 calcium channel, voltage-dependent, alpha 2/delta subunit 3 protein-coding 13-PTNLD9-TUMOR_peak_30467 chr20 14681345 14681528 + 17.28058 NA intron (NM_080676, intron 5 of 16) intron (NM_080676, intron 5 of 16) 146406 NR_104193 140848 Hs.570367 NR_104193 MACROD2-IT1 C20orf68|NCRNA00227|bA467D7.4 MACROD2 intronic transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_16457 chr14 92446589 92446784 + 17.28058 NA intron (NM_004239, intron 16 of 20) intron (NM_004239, intron 16 of 20) -32640 NM_006329 10516 Hs.332708 NM_006329 HPRD:05204 FBLN5 ADCL2|ARCL1A|ARMD3|DANCE|EVEC|FIBL-5|UP50 fibulin 5 protein-coding 13-PTNLD9-TUMOR_peak_13896 chr12 113354288 113354499 + 17.28058 NA exon (NM_001032409, exon 4 of 6) exon (NM_001032409, exon 4 of 6) 9654 NM_001032409 4938 Hs.524760 NM_002534 HPRD:08879 OAS1 IFI-4|OIAS|OIASI 2'-5'-oligoadenylate synthetase 1, 40/46kDa protein-coding 13-PTNLD9-TUMOR_peak_51111 chr8 69672170 69672409 + 17.28058 NA intron (NM_052958, intron 10 of 13) L2c|LINE|L2 344136 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LOC100505718 - uncharacterized LOC100505718 ncRNA 13-PTNLD9-TUMOR_peak_163 chr1 3459583 3460258 + 17.28058 NA intron (NM_001409, intron 4 of 36) CpG 17434 NR_030277 693135 NR_030277 MIR551A MIRN551A microRNA 551a ncRNA 13-PTNLD9-TUMOR_peak_53092 chr9 34899673 34899800 + 17.28058 NA Intergenic Intergenic -58456 NM_015297 23349 Hs.7989 NM_015297 ENSG00000122733 KIAA1045 - KIAA1045 protein-coding 13-PTNLD9-TUMOR_peak_30956 chr20 35923462 35923680 + 17.28058 NA intron (NM_001003897, intron 1 of 2) intron (NM_001003897, intron 1 of 2) 5520 NM_022077 63905 Hs.6126 NM_022077 HPRD:14356 MANBAL - mannosidase, beta A, lysosomal-like protein-coding 13-PTNLD9-TUMOR_peak_33111 chr22 31198796 31199058 + 17.28058 NA intron (NM_001282740, intron 1 of 12) CpG -19576 NM_001282741 23762 Hs.517546 NM_030758 HPRD:09471 OSBP2 HLM|ORP-4|ORP4|OSBPL1|OSBPL4 oxysterol binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_44598 chr6 32044237 32044516 + 17.28058 NA intron (NM_019105, intron 11 of 43) MIRb|SINE|MIR -30471 NM_032470 7148 Hs.485104 NM_019105 HPRD:02993 TNXB EDS3|HXBL|TENX|TN-X|TNX|TNXB1|TNXB2|TNXBS|XB|XBS tenascin XB protein-coding 13-PTNLD9-TUMOR_peak_26032 chr2 9252238 9252543 + 17.28058 NA Intergenic Intergenic -94504 NM_001135191 8853 Hs.555902 NM_003887 HPRD:04820 ASAP2 AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 protein-coding 13-PTNLD9-TUMOR_peak_41362 chr5 77189428 77189641 + 17.28058 NA intron (NR_105012, intron 1 of 1) intron (NR_105012, intron 1 of 1) 9054 NR_105012 101929154 Hs.252895 NR_105012 LOC101929154 - uncharacterized LOC101929154 ncRNA 13-PTNLD9-TUMOR_peak_31149 chr20 43363703 43363895 + 17.27928 NA Intergenic Intergenic -10689 NM_022358 60598 Hs.528664 NM_022358 KCNK15 K2p15.1|KCNK11|KCNK14|KT3.3|TASK-5|TASK5|dJ781B1.1 potassium channel, subfamily K, member 15 protein-coding 13-PTNLD9-TUMOR_peak_12044 chr12 7261073 7261279 + 17.27928 NA intron (NR_026947, intron 1 of 11) intron (NR_026947, intron 1 of 11) 272 NR_026947 283314 Hs.744212 NR_026947 ENSG00000205885 C1RL-AS1 MATL2963 C1RL antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_33591 chr3 4894809 4895182 + 17.27928 NA Intergenic LTR39|LTR|ERV1 -44915 NR_037903 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_32834 chr22 21594239 21594403 + 17.27928 NA Intergenic Intergenic -42393 NR_024583 29797 Hs.396963 NM_001029950 POM121L8P DKFZp434K191 POM121 transmembrane nucleoporin-like 8 pseudogene pseudo 13-PTNLD9-TUMOR_peak_27988 chr2 110514806 110515004 + 17.27770 NA Intergenic Intergenic -35430 NM_032260 84220 Hs.469630 NM_005054 HPRD:04128 RGPD5 BS-63|BS63|HEL161|RGP5 RANBP2-like and GRIP domain containing 5 protein-coding 13-PTNLD9-TUMOR_peak_22748 chr18 20143135 20143327 + 17.27770 NA Intergenic Intergenic -145353 NM_172241 64693 Hs.406709 NM_022663 HPRD:16395 CTAGE1 CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2 cutaneous T-cell lymphoma-associated antigen 1 protein-coding 13-PTNLD9-TUMOR_peak_49903 chr7_gl000195_random 66530 66706 + 17.27770 NA intron (NM_001242480, intron 2 of 3) AluJb|SINE|Alu 20101 NM_001242480 389831 Hs.743984 NM_001242480 LOC389831 - uncharacterized LOC389831 protein-coding 13-PTNLD9-TUMOR_peak_40283 chr5 9927318 9927796 + 17.27770 NA Intergenic Intergenic -23621 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LOC285692 - uncharacterized LOC285692 ncRNA 13-PTNLD9-TUMOR_peak_47909 chr7 73417152 73417277 + 17.27770 NA Intergenic Intergenic -24905 NM_001278914 2006 Hs.647061 NM_000501 HPRD:00556 ELN SVAS|WBS|WS elastin protein-coding 13-PTNLD9-TUMOR_peak_36313 chr3 148673477 148673859 + 17.27770 NA Intergenic Intergenic -35527 NM_001184721 2992 Hs.477892 NM_004130 HPRD:06805 GYG1 GSD15|GYG glycogenin 1 protein-coding 13-PTNLD9-TUMOR_peak_2828 chr1 111081703 111081925 + 17.27770 NA Intergenic L2c|LINE|L2 -20017 NM_005549 3744 Hs.248140 NM_005549 HPRD:03882 KCNA10 Kcn1|Kv1.8 potassium voltage-gated channel, shaker-related subfamily, member 10 protein-coding 13-PTNLD9-TUMOR_peak_15507 chr14 34420122 34420479 + 17.27770 NA promoter-TSS (NM_022073) promoter-TSS (NM_022073) -16 NM_022073 112399 Hs.135507 NM_022073 HPRD:06972 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia-inducible factor 3 protein-coding 13-PTNLD9-TUMOR_peak_42827 chr5 158945406 158945770 + 17.27770 NA Intergenic Intergenic -52304 NR_027110 285627 Hs.552766 NR_027110 ENSG00000253298 LOC285627 - uncharacterized LOC285627 ncRNA 13-PTNLD9-TUMOR_peak_11987 chr12 6649567 6650062 + 17.27770 NA intron (NM_001039670, intron 9 of 9) CpG 5429 NM_001256799 2597 Hs.544577 NM_002046 HPRD:00713 GAPDH G3PD|GAPD|HEL-S-162eP glyceraldehyde-3-phosphate dehydrogenase protein-coding 13-PTNLD9-TUMOR_peak_22207 chr17 77889943 77890125 + 17.27770 NA non-coding (NR_110850, exon 5 of 6) non-coding (NR_110850, exon 5 of 6) -3122 NR_110851 101928738 Hs.399280 NR_110851 ENSG00000262188 LOC101928738 - uncharacterized LOC101928738 ncRNA 13-PTNLD9-TUMOR_peak_2886 chr1 113247494 113247878 + 17.27191 NA intron (NM_001042678, intron 1 of 4) intron (NM_001042678, intron 1 of 4) 1992 NM_001042679 389 Hs.502659 NM_175744 HPRD:01322 RHOC ARH9|ARHC|H9|RHOH9 ras homolog family member C protein-coding 13-PTNLD9-TUMOR_peak_46705 chr7 2150053 2150216 + 17.24544 NA intron (NM_001013836, intron 11 of 18) L3|LINE|CR1 122449 NM_003550 8379 Hs.654838 NM_003550 HPRD:04065 MAD1L1 MAD1|PIG9|TP53I9|TXBP181 MAD1 mitotic arrest deficient-like 1 (yeast) protein-coding 13-PTNLD9-TUMOR_peak_37529 chr4 596562 596717 + 17.24544 NA Intergenic Intergenic -22724 NM_000283 5158 Hs.623810 NM_000283 HPRD:01571 PDE6B CSNB3|CSNBAD2|PDEB|RP40|rd1 phosphodiesterase 6B, cGMP-specific, rod, beta protein-coding 13-PTNLD9-TUMOR_peak_21825 chr17 64751293 64751613 + 17.24544 NA intron (NM_002737, intron 13 of 16) intron (NM_002737, intron 13 of 16) -31737 NR_030364 693219 NR_030364 MIR634 MIRN634|hsa-mir-634 microRNA 634 ncRNA 13-PTNLD9-TUMOR_peak_41567 chr5 96036915 96037100 + 17.24349 NA intron (NM_001042440, intron 3 of 29) intron (NM_001042440, intron 3 of 29) -1486 NM_173060 831 Hs.436186 NM_001750 HPRD:00233 CAST BS-17 calpastatin protein-coding 13-PTNLD9-TUMOR_peak_5100 chr1 203559771 203560087 + 17.22941 NA Intergenic Intergenic -35986 NM_001001396 493 Hs.343522 NM_001684 HPRD:00159 ATP2B4 ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x ATPase, Ca++ transporting, plasma membrane 4 protein-coding 13-PTNLD9-TUMOR_peak_31576 chr20 52445925 52446162 + 17.22941 NA Intergenic Intergenic 46205 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_37474 chr3 197183471 197183678 + 17.22941 NA Intergenic CpG 99284 NM_203314 622 Hs.274539 NM_004051 HPRD:04344 BDH1 BDH|SDR9C1 3-hydroxybutyrate dehydrogenase, type 1 protein-coding 13-PTNLD9-TUMOR_peak_13066 chr12 58542298 58542546 + 17.22676 NA Intergenic Intergenic 206977 NM_033276 91419 Hs.61188 NM_033276 HPRD:17256 XRCC6BP1 KUB3 XRCC6 binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_20740 chr17 26292304 26292615 + 17.22676 NA Intergenic Intergenic -72050 NM_001076680 201229 Hs.687951 NM_001076680 ENSG00000232859 LYRM9 C17orf108 LYR motif containing 9 protein-coding 13-PTNLD9-TUMOR_peak_31520 chr20 51101031 51101293 + 17.22676 NA Intergenic MamRep137|DNA|TcMar? -136215 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 13-PTNLD9-TUMOR_peak_12581 chr12 41880485 41880817 + 17.22676 NA intron (NM_013377, intron 1 of 7) L2a|LINE|L2 49110 NM_013377 29951 Hs.380044 NM_013377 HPRD:15116 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 13-PTNLD9-TUMOR_peak_42315 chr5 139675044 139675257 + 17.22676 NA intron (NM_002622, intron 2 of 3) intron (NM_002622, intron 2 of 3) 7539 NM_002622 5201 Hs.483564 NM_002622 HPRD:05357 PFDN1 PDF|PFD1 prefoldin subunit 1 protein-coding 13-PTNLD9-TUMOR_peak_29437 chr2 196571369 196571512 + 17.22676 NA exon (NM_001127257, exon 4 of 10) exon (NM_001127257, exon 4 of 10) 49588 NM_020342 57181 Hs.650158 NM_020342 HPRD:10572 SLC39A10 LZT-Hs2 solute carrier family 39 (zinc transporter), member 10 protein-coding 13-PTNLD9-TUMOR_peak_7415 chr10 55016429 55016758 + 17.22676 NA Intergenic Intergenic -485133 NM_000242 4153 Hs.499674 NM_000242 HPRD:01107 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose-binding lectin (protein C) 2, soluble protein-coding 13-PTNLD9-TUMOR_peak_34489 chr3 48282512 48282737 + 17.22676 NA promoter-TSS (NM_016089) promoter-TSS (NM_016089) 28 NM_016089 51385 Hs.172602 NM_016089 HPRD:15865 ZNF589 SZF1 zinc finger protein 589 protein-coding 13-PTNLD9-TUMOR_peak_40249 chr5 8010543 8010750 + 17.22676 NA Intergenic LTR40c|LTR|ERVL 141429 NM_002454 4552 Hs.481551 NM_002454 HPRD:03979 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 13-PTNLD9-TUMOR_peak_51994 chr8 128832010 128832307 + 17.22372 NA Intergenic Intergenic 23950 NR_031609 100302185 NR_031609 miRBase:MI0006337 MIR1204 hsa-mir-1204 microRNA 1204 ncRNA 13-PTNLD9-TUMOR_peak_49443 chr7 142457082 142457362 + 17.22372 NA promoter-TSS (NM_002769) promoter-TSS (NM_002769) -97 NM_002769 5644 Hs.449281 NM_002769 HPRD:02039 PRSS1 TRP1|TRY1|TRY4|TRYP1 protease, serine, 1 (trypsin 1) protein-coding 13-PTNLD9-TUMOR_peak_14147 chr12 122948873 122949185 + 17.22372 NA Intergenic Intergenic 36591 NM_017612 55596 Hs.37706 NM_017612 ZCCHC8 - zinc finger, CCHC domain containing 8 protein-coding 13-PTNLD9-TUMOR_peak_53790 chr9 85663072 85663372 + 17.21967 NA intron (NM_152573, intron 1 of 16) intron (NM_152573, intron 1 of 16) 14821 NM_152573 158158 Hs.129136 NM_152573 HPRD:08337 RASEF RAB45 RAS and EF-hand domain containing protein-coding 13-PTNLD9-TUMOR_peak_53876 chr9 89809454 89809730 + 17.21967 NA Intergenic Intergenic 46033 NM_001001709 401535 Hs.657740 NM_001001709 HPRD:16988 C9orf170 - chromosome 9 open reading frame 170 protein-coding 13-PTNLD9-TUMOR_peak_33613 chr3 5430841 5431074 + 17.21967 NA Intergenic L1MC3|LINE|L1 -139017 NR_039953 100616334 NR_039953 miRBase:MI0017437 MIR4790 - microRNA 4790 ncRNA 13-PTNLD9-TUMOR_peak_25475 chr19 51399924 51400144 + 17.21967 NA promoter-TSS (NR_002948) promoter-TSS (NR_002948) -380 NR_002948 606293 Hs.643424 NR_002948 ENSG00000197588 KLKP1 KARMA|KLK31P|KRSP1|PsiKLK1|YKLK1 kallikrein pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_847 chr1 28462142 28462510 + 17.21967 NA Intergenic MLT1J|LTR|ERVL-MaLR 41129 NM_000952 5724 Hs.77542 NM_000952 HPRD:01422 PTAFR PAFR platelet-activating factor receptor protein-coding 13-PTNLD9-TUMOR_peak_22463 chr18 3297201 3297714 + 17.21967 NA Intergenic L1PB3|LINE|L1 34740 NM_001144945 103910 Hs.190086 NM_033546 HPRD:10095 MYL12B MLC-B|MRLC2 myosin, light chain 12B, regulatory protein-coding 13-PTNLD9-TUMOR_peak_32361 chr21 41005885 41006015 + 17.21967 NA intron (NM_001278650, intron 1 of 2) Charlie9|DNA|hAT-Charlie 21083 NM_001278650 10317 Hs.733638 NM_006057 HPRD:06818 B3GALT5 B3GalT-V|B3GalTx|B3T5|GLCT5|beta-1,3-GalTase 5|beta-3-Gx-T5|beta3Gal-T5 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5 protein-coding 13-PTNLD9-TUMOR_peak_46764 chr7 4783430 4783610 + 17.20522 NA intron (NM_001037165, intron 2 of 8) AluSc8|SINE|Alu -31742 NM_014855 9907 Hs.558440 NM_014855 AP5Z1 KIAA0415|SPG48|zeta adaptor-related protein complex 5, zeta 1 subunit protein-coding 13-PTNLD9-TUMOR_peak_3099 chr1 120623836 120623995 + 17.20045 NA Intergenic Intergenic -11598 NM_024408 4853 Hs.487360 NM_024408 HPRD:02606 NOTCH2 AGS2|HJCYS|hN2 notch 2 protein-coding 13-PTNLD9-TUMOR_peak_48015 chr7 75580918 75581109 + 17.18981 NA intron (NM_000941, intron 1 of 15) intron (NM_000941, intron 1 of 15) 7912 NR_002955 677801 Hs.689708 NR_002955 ENSG00000201643 SNORA14A ACA14a small nucleolar RNA, H/ACA box 14A snoRNA 13-PTNLD9-TUMOR_peak_44257 chr6 26533068 26533285 + 17.18981 NA Intergenic tRNA-Thr-ACY_|tRNA|tRNA -5396 NM_006353 10473 Hs.236774 NM_006353 HMGN4 HMG17L3|NHC high mobility group nucleosomal binding domain 4 protein-coding 13-PTNLD9-TUMOR_peak_32416 chr21 43518049 43518258 + 17.18981 NA intron (NM_001004416, intron 6 of 22) intron (NM_001004416, intron 6 of 22) 10491 NR_027243 150147 Hs.558646 NM_152507 HPRD:10740 C21orf128 - chromosome 21 open reading frame 128 ncRNA 13-PTNLD9-TUMOR_peak_40155 chr5 683664 683885 + 17.17998 NA intron (NM_007030, intron 1 of 3) intron (NM_007030, intron 1 of 3) 9736 NM_007030 11076 Hs.481466 NM_007030 HPRD:18522 TPPP TPPP/p25|TPPP1|p24|p25|p25alpha tubulin polymerization promoting protein protein-coding 13-PTNLD9-TUMOR_peak_4625 chr1 181064121 181064303 + 17.17998 NA Intergenic Intergenic 6574 NM_016545 51278 Hs.15725 NM_016545 HPRD:06210 IER5 SBBI48 immediate early response 5 protein-coding 13-PTNLD9-TUMOR_peak_40319 chr5 10595936 10596191 + 17.17998 NA intron (NM_001164440, intron 1 of 3) intron (NM_001164440, intron 1 of 3) 31628 NM_001164440 651746 Hs.26039 NM_001164440 ANKRD33B - ankyrin repeat domain 33B protein-coding 13-PTNLD9-TUMOR_peak_34416 chr3 45592997 45593437 + 17.17998 NA Intergenic Intergenic -42180 NR_048543 100885795 Hs.641094 NR_048543 LARS2-AS1 - LARS2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_52356 chr8 142379090 142379312 + 17.17998 NA Intergenic Intergenic -1836 NM_005293 2843 Hs.188859 NM_005293 HPRD:03550 GPR20 - G protein-coupled receptor 20 protein-coding 13-PTNLD9-TUMOR_peak_43220 chr5 177283422 177283718 + 17.17998 NA Intergenic Intergenic -18692 NR_003615 728554 Hs.535769 NR_003615 ENSG00000170089 LOC728554 - THO complex 3 pseudogene pseudo 13-PTNLD9-TUMOR_peak_1133 chr1 36627735 36628106 + 17.17998 NA intron (NM_001286365, intron 1 of 15) intron (NM_001286365, intron 1 of 15) -6266 NM_001270895 27095 Hs.523131 NM_014408 HPRD:11644 TRAPPC3 BET3 trafficking protein particle complex 3 protein-coding 13-PTNLD9-TUMOR_peak_1667 chr1 47657259 47657543 + 17.17527 NA Intergenic L2|LINE|L2 -1630 NM_005764 10158 Hs.431099 NM_005764 HPRD:06211 PDZK1IP1 DD96|MAP17|SPAP PDZK1 interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_30064 chr2 235158624 235158852 + 17.16933 NA Intergenic Intergenic 199392 NM_006944 6694 Hs.444488 NM_006944 HPRD:04029 SPP2 SPP-24|SPP24 secreted phosphoprotein 2, 24kDa protein-coding 13-PTNLD9-TUMOR_peak_33950 chr3 15810535 15810763 + 17.16933 NA intron (NM_001195098, intron 2 of 27) intron (NM_001195098, intron 2 of 27) -12591 NM_001195099 23243 Hs.335239 NM_015199 HPRD:10651 ANKRD28 PITK|PPP1R65 ankyrin repeat domain 28 protein-coding 13-PTNLD9-TUMOR_peak_8034 chr10 95143453 95144151 + 17.16170 NA intron (NM_133337, intron 18 of 52) intron (NM_133337, intron 18 of 52) 98272 NM_133337 26509 Hs.602086 NM_013451 HPRD:06857 MYOF FER1L3 myoferlin protein-coding 13-PTNLD9-TUMOR_peak_41213 chr5 71362571 71362829 + 17.16170 NA Intergenic Intergenic -40418 NM_005909 4131 Hs.335079 NM_005909 HPRD:01139 MAP1B FUTSCH|MAP5|PPP1R102 microtubule-associated protein 1B protein-coding 13-PTNLD9-TUMOR_peak_40589 chr5 34683125 34683344 + 17.16170 NA intron (NM_001145520, intron 1 of 17) intron (NM_001145520, intron 1 of 17) -1378 NM_001145521 26064 Hs.431400 NM_015577 HPRD:09416 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 13-PTNLD9-TUMOR_peak_32803 chr22 20878473 20878659 + 17.16170 NA intron (NM_001293237, intron 1 of 16) intron (NM_001293237, intron 1 of 16) 16231 NM_001293237 51586 Hs.517421 NM_015889 HPRD:12117 MED15 ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7 mediator complex subunit 15 protein-coding 13-PTNLD9-TUMOR_peak_5126 chr1 204131630 204131853 + 17.16170 NA intron (NM_000537, intron 1 of 9) intron (NM_000537, intron 1 of 9) 3724 NM_000537 5972 Hs.3210 NM_000537 HPRD:01564 REN HNFJ2 renin protein-coding 13-PTNLD9-TUMOR_peak_13516 chr12 95867664 95868010 + 17.16170 NA promoter-TSS (NM_006838) promoter-TSS (NM_006838) 15 NM_006838 10988 Hs.444986 NM_006838 HPRD:03522 METAP2 MAP2|MNPEP|p67|p67eIF2 methionyl aminopeptidase 2 protein-coding 13-PTNLD9-TUMOR_peak_53683 chr9 78831159 78831418 + 17.16170 NA intron (NM_001190482, intron 20 of 36) L4|LINE|RTE 178156 NM_018339 55312 Hs.37558 NM_018339 HPRD:17969 RFK RIFK riboflavin kinase protein-coding 13-PTNLD9-TUMOR_peak_11544 chr11 126002280 126002444 + 17.16170 NA Intergenic Intergenic -69175 NM_001243597 50937 Hs.38034 NM_016952 HPRD:16372 CDON CDO|CDON1|HPE11|ORCAM cell adhesion associated, oncogene regulated protein-coding 13-PTNLD9-TUMOR_peak_42940 chr5 169003185 169003499 + 17.16170 NA Intergenic Intergenic -7296 NM_017785 54908 Hs.368710 NM_017785 HPRD:08623 SPDL1 CCDC99 spindle apparatus coiled-coil protein 1 protein-coding 13-PTNLD9-TUMOR_peak_48102 chr7 77169384 77169573 + 17.15920 NA intron (NM_001131009, intron 1 of 16) intron (NM_001131009, intron 1 of 16) 2126 NM_001131008 5782 Hs.61812 NM_002835 HPRD:02513 PTPN12 PTP-PEST|PTPG1 protein tyrosine phosphatase, non-receptor type 12 protein-coding 13-PTNLD9-TUMOR_peak_41639 chr5 102246060 102246281 + 17.15792 NA intron (NM_138766, intron 3 of 23) intron (NM_138766, intron 3 of 23) 44643 NM_001177306 5066 Hs.369430 NM_000919 HPRD:01361 PAM PAL|PHM peptidylglycine alpha-amidating monooxygenase protein-coding 13-PTNLD9-TUMOR_peak_17302 chr15 52550006 52550209 + 17.15677 NA intron (NM_018728, intron 10 of 40) intron (NM_018728, intron 10 of 40) 19290 NR_031670 100302202 NR_031670 MIR1266 MIRN1266|hsa-mir-1266 microRNA 1266 ncRNA 13-PTNLD9-TUMOR_peak_9535 chr11 35188250 35188465 + 17.15677 NA intron (NM_001202555, intron 1 of 9) intron (NM_001202555, intron 1 of 9) 27940 NM_001202556 960 Hs.502328 NM_000610 HPRD:00115 CD44 CDW44|CSPG8|ECMR-III|HCELL|HUTCH-I|IN|LHR|MC56|MDU2|MDU3|MIC4|Pgp1 CD44 molecule (Indian blood group) protein-coding 13-PTNLD9-TUMOR_peak_7402 chr10 54203261 54203793 + 17.15677 NA Intergenic L2a|LINE|L2 11505 NR_120642 101928687 Hs.380362 NR_120641 ENSG00000231131 LINC01468 lnc-MBL2-4 long intergenic non-protein coding RNA 1468 ncRNA 13-PTNLD9-TUMOR_peak_13063 chr12 58424727 58424971 + 17.15677 NA Intergenic MLT1F|LTR|ERVL-MaLR 89404 NM_033276 91419 Hs.61188 NM_033276 HPRD:17256 XRCC6BP1 KUB3 XRCC6 binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_54372 chr9 111240844 111241051 + 17.15677 NA Intergenic MamRep605|Unknown|Unknown 377328 NM_006686 10880 Hs.534390 NM_006686 ACTL7B Tact1 actin-like 7B protein-coding 13-PTNLD9-TUMOR_peak_32053 chr21 29075696 29076033 + 17.15677 NA intron (NR_049807, intron 2 of 4) L2b|LINE|L2 -18834 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 13-PTNLD9-TUMOR_peak_51732 chr8 120063757 120064076 + 17.15525 NA Intergenic Intergenic -15508 NM_006438 10584 Hs.176615 NM_006438 COLEC10 CLL1 collectin sub-family member 10 (C-type lectin) protein-coding 13-PTNLD9-TUMOR_peak_38680 chr4 79487218 79487468 + 17.15525 NA intron (NM_005139, intron 2 of 12) intron (NM_005139, intron 2 of 12) 14601 NM_005139 306 Hs.480042 NM_005139 HPRD:00111 ANXA3 ANX3 annexin A3 protein-coding 13-PTNLD9-TUMOR_peak_32478 chr21 44753258 44753559 + 17.15525 NA Intergenic L2b|LINE|L2 -1489 NR_103713 100126693 Hs.473952 NR_103713 LINC00322 C21orf136|NCRNA00322 long intergenic non-protein coding RNA 322 ncRNA 13-PTNLD9-TUMOR_peak_52349 chr8 142300416 142300772 + 17.15525 NA Intergenic Intergenic -35866 NM_001286646 57210 Hs.372492 NM_001080431 ENSG00000022567 SLC45A4 - solute carrier family 45, member 4 protein-coding 13-PTNLD9-TUMOR_peak_4536 chr1 178310425 178310667 + 17.14394 NA promoter-TSS (NM_004841) promoter-TSS (NM_004841) -60 NM_004841 9462 Hs.496139 NM_004841 HPRD:05845 RASAL2 NGAP RAS protein activator like 2 protein-coding 13-PTNLD9-TUMOR_peak_4957 chr1 201426131 201426347 + 17.13194 NA Intergenic Intergenic 12060 NR_073080 23612 Hs.268557 NM_012396 HPRD:09519 PHLDA3 TIH1 pleckstrin homology-like domain, family A, member 3 protein-coding 13-PTNLD9-TUMOR_peak_13874 chr12 112279596 112280048 + 17.13087 NA promoter-TSS (NM_139078) promoter-TSS (NM_139078) -210 NM_003668 8550 Hs.333120 NM_003668 HPRD:09467 MAPKAPK5 MAPKAP-K5|MK-5|MK5|PRAK mitogen-activated protein kinase-activated protein kinase 5 protein-coding 13-PTNLD9-TUMOR_peak_42929 chr5 168434168 168434445 + 17.13087 NA intron (NM_003062, intron 4 of 35) THE1D|LTR|ERVL-MaLR -5926 NR_109897 728095 Hs.145601 NR_109897 ENSG00000248222 CTB-174D11.1 - uncharacterized LOC728095 ncRNA 13-PTNLD9-TUMOR_peak_3934 chr1 156392644 156392810 + 17.13087 NA intron (NM_006365, intron 2 of 6) intron (NM_006365, intron 2 of 6) -2506 NR_029691 407046 NR_029691 MIR9-1 MIRN9-1|hsa-mir-9-1|miRNA9-1 microRNA 9-1 ncRNA 13-PTNLD9-TUMOR_peak_39505 chr4 143017168 143017469 + 17.13087 NA intron (NM_001101669, intron 23 of 25) intron (NM_001101669, intron 23 of 25) 459569 NM_000585 3600 Hs.168132 NM_000585 HPRD:02776 IL15 IL-15 interleukin 15 protein-coding 13-PTNLD9-TUMOR_peak_24203 chr19 14685126 14685321 + 17.13001 NA Intergenic MER91C|DNA|hAT-Tip100 -2334 NM_004146 4713 Hs.532853 NM_004146 HPRD:11957 NDUFB7 B18|CI-B18 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7, 18kDa protein-coding 13-PTNLD9-TUMOR_peak_21060 chr17 39895997 39896334 + 17.11707 NA Intergenic L2c|LINE|L2 -5267 NM_001079870 9001 Hs.158300 NM_003949 HPRD:02972 HAP1 HAP2|HIP5|HLP|hHLP1 huntingtin-associated protein 1 protein-coding 13-PTNLD9-TUMOR_peak_56657 chrX 152411799 152412233 + 17.11707 NA Intergenic Intergenic 73757 NM_032882 84968 Hs.533301 NM_032882 HPRD:06637 PNMA6A MA6|PNMA6|PNMA6C paraneoplastic Ma antigen family member 6A protein-coding 13-PTNLD9-TUMOR_peak_24024 chr19 11908358 11908538 + 17.11707 NA promoter-TSS (NM_152356) promoter-TSS (NM_152356) -943 NM_152356 126069 Hs.631634 NM_152356 HPRD:15803 ZNF491 - zinc finger protein 491 protein-coding 13-PTNLD9-TUMOR_peak_32504 chr21 45132197 45132392 + 17.11707 NA Intergenic Intergenic -6684 NM_003681 8566 Hs.284491 NM_003681 HPRD:01526 PDXK C21orf124|C21orf97|HEL-S-1a|PKH|PNK pyridoxal (pyridoxine, vitamin B6) kinase protein-coding 13-PTNLD9-TUMOR_peak_49645 chr7 150810460 150810665 + 17.10802 NA intron (NM_001042535, intron 1 of 8) intron (NM_001042535, intron 1 of 8) 26763 NM_001042535 116988 Hs.647075 NM_031946 HPRD:16707 AGAP3 AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3 ArfGAP with GTPase domain, ankyrin repeat and PH domain 3 protein-coding 13-PTNLD9-TUMOR_peak_28555 chr2 135493874 135494065 + 17.10398 NA Intergenic Intergenic -17398 NM_030923 81615 Hs.369471 NM_030923 HPRD:13178 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 13-PTNLD9-TUMOR_peak_39436 chr4 140688342 140688636 + 17.10398 NA intron (NM_018717, intron 3 of 5) X7A_LINE|LINE|CR1 101567 NM_002413 4258 Hs.81874 NM_002413 HPRD:03436 MGST2 GST2|MGST-II microsomal glutathione S-transferase 2 protein-coding 13-PTNLD9-TUMOR_peak_46317 chr6 151381268 151381637 + 17.10398 NA intron (NM_001242768, intron 26 of 27) intron (NM_001242768, intron 26 of 27) -179682 NM_005100 9590 Hs.371240 NM_005100 HPRD:05263 AKAP12 AKAP250|SSeCKS A kinase (PRKA) anchor protein 12 protein-coding 13-PTNLD9-TUMOR_peak_48445 chr7 98822121 98822341 + 17.10398 NA Intergenic MIRc|SINE|MIR -17142 NM_001145715 402569 Hs.253050 NM_001145715 ENSG00000185467 KPNA7 - karyopherin alpha 7 (importin alpha 8) protein-coding 13-PTNLD9-TUMOR_peak_27992 chr2 110653677 110654071 + 17.09982 NA Intergenic L1MD2|LINE|L1 -2135 NR_027467 96626 Hs.535619 NM_033514 HPRD:17277 LIMS3 PINCH-3 LIM and senescent cell antigen-like domains 3 protein-coding 13-PTNLD9-TUMOR_peak_43844 chr6 13355705 13355984 + 17.09782 NA Intergenic Intergenic -27029 NM_001258457 51256 Hs.484678 NM_016495 HPRD:18165 TBC1D7 MGCPH|PIG51|TBC7 TBC1 domain family, member 7 protein-coding 13-PTNLD9-TUMOR_peak_19702 chr16 70782187 70782494 + 17.09782 NA intron (NM_018052, intron 12 of 18) L2b|LINE|L2 -6623 NR_034083 100130894 Hs.678899 NR_034083 ENSG00000214353 VAC14-AS1 - VAC14 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_2874 chr1 112936792 112937234 + 17.09727 NA Intergenic Intergenic -1787 NM_018704 55917 Hs.744100 NM_018704 HPRD:10906 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 13-PTNLD9-TUMOR_peak_51290 chr8 92192495 92192756 + 17.09384 NA intron (NM_001129890, intron 5 of 7) MLT1F1|LTR|ERVL-MaLR -25088 NR_039805 100616245 NR_039805 MIR4661 - microRNA 4661 ncRNA 13-PTNLD9-TUMOR_peak_14977 chr13 98220222 98220427 + 17.09384 NA Intergenic LTR67B|LTR|ERVL 133849 NM_021033 5911 Hs.508480 NM_021033 RAP2A K-REV|KREV|RAP2|RbBP-30 RAP2A, member of RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_12088 chr12 8815279 8815576 + 17.09384 NA promoter-TSS (NM_001297711) promoter-TSS (NM_001297711) 57 NM_001297709 8076 Hs.512842 NM_003480 HPRD:03063 MFAP5 MAGP-2|MAGP2|MFAP-5|MP25 microfibrillar associated protein 5 protein-coding 13-PTNLD9-TUMOR_peak_14887 chr13 77491898 77492357 + 17.09384 NA Intergenic L1PBa1|LINE|L1 -10458 NR_026983 690 Hs.567241 NR_026983 BTF3P11 BTF3L1|HUMBTFB|OCIF|OPG|TNFRSF11B basic transcription factor 3 pseudogene 11 pseudo 13-PTNLD9-TUMOR_peak_27183 chr2 69913987 69914287 + 17.09384 NA Intergenic L3|LINE|CR1 -43160 NM_014911 22848 Hs.468878 NM_014911 AAK1 - AP2 associated kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_16394 chr14 87599811 87600075 + 17.09384 NA Intergenic Intergenic 227821 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LOC283585 - uncharacterized LOC283585 ncRNA 13-PTNLD9-TUMOR_peak_14653 chr13 42117787 42118091 + 17.09384 NA Intergenic MER74B|LTR|ERVL 24592 NR_049803 100847026 NR_049803 MIR5006 - microRNA 5006 ncRNA 13-PTNLD9-TUMOR_peak_2717 chr1 108725142 108725352 + 17.09384 NA intron (NM_013386, intron 2 of 9) AluSx1|SINE|Alu 10184 NM_213651 29957 Hs.656870 NM_013386 HPRD:12290 SLC25A24 APC1|SCAMC-1 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24 protein-coding 13-PTNLD9-TUMOR_peak_11484 chr11 123308935 123309184 + 17.09384 NA Intergenic Intergenic -56839 NR_039714 100616319 NR_039714 miRBase:MI0016855 MIR4493 - microRNA 4493 ncRNA 13-PTNLD9-TUMOR_peak_9268 chr11 19366331 19366558 + 17.09384 NA Intergenic L3|LINE|CR1 -5827 NM_001111018 89797 Hs.64341 NM_145117 HPRD:07385 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 13-PTNLD9-TUMOR_peak_50233 chr8 21079158 21079594 + 17.09384 NA Intergenic Intergenic -76374 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 13-PTNLD9-TUMOR_peak_24739 chr19 35490342 35490538 + 17.09232 NA promoter-TSS (NM_001136199) promoter-TSS (NM_001136199) -806 NM_001136199 57655 Hs.515351 NM_020895 HPRD:11153 GRAMD1A KIAA1533 GRAM domain containing 1A protein-coding 13-PTNLD9-TUMOR_peak_38658 chr4 78500657 78500864 + 17.08931 NA intron (NM_006419, intron 1 of 4) intron (NM_006419, intron 1 of 4) 67853 NM_006419 10563 Hs.100431 NM_006419 HPRD:05513 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 chemokine (C-X-C motif) ligand 13 protein-coding 13-PTNLD9-TUMOR_peak_46749 chr7 3951377 3951587 + 17.08931 NA intron (NM_152744, intron 5 of 44) intron (NM_152744, intron 5 of 44) -217835 NM_001079653 221935 Hs.653013 NM_152744 HPRD:07388 SDK1 - sidekick cell adhesion molecule 1 protein-coding 13-PTNLD9-TUMOR_peak_349 chr1 9869360 9869599 + 17.08931 NA intron (NM_001009566, intron 1 of 18) intron (NM_001009566, intron 1 of 18) 15071 NM_001009566 22883 Hs.29665 NM_014944 HPRD:10837 CLSTN1 ALC-ALPHA|CDHR12|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2 calsyntenin 1 protein-coding 13-PTNLD9-TUMOR_peak_9621 chr11 43942295 43942582 + 17.08931 NA promoter-TSS (NR_038907) promoter-TSS (NR_038907) 56 NR_038907 100507300 Hs.664588 NR_038907 ENSG00000244926 ALKBH3-AS1 - ALKBH3 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_17175 chr15 44205568 44205878 + 17.08931 NA intron (NM_001286490, intron 5 of 15) intron (NM_001286490, intron 5 of 15) -35354 NR_003571 728758 Hs.658099 NR_003571 PIN4P1 - protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_41561 chr5 95949873 95950085 + 17.08931 NA Intergenic Intergenic -47762 NM_001190442 831 Hs.436186 NM_001750 HPRD:00233 CAST BS-17 calpastatin protein-coding 13-PTNLD9-TUMOR_peak_44855 chr6 37102403 37102628 + 17.08266 NA Intergenic Intergenic -35407 NM_002648 5292 Hs.81170 NM_002648 HPRD:01292 PIM1 PIM Pim-1 proto-oncogene, serine/threonine kinase protein-coding 13-PTNLD9-TUMOR_peak_13235 chr12 68041658 68041906 + 17.08266 NA promoter-TSS (NM_006482) promoter-TSS (NM_006482) -730 NM_006482 8445 Hs.173135 NM_003583 DYRK2 - dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_15732 chr14 51144270 51144468 + 17.08225 NA Intergenic Intergenic -9298 NM_021818 60485 Hs.642842 NM_021818 HPRD:06229 SAV1 SAV|WW45|WWP4 salvador family WW domain containing protein 1 protein-coding 13-PTNLD9-TUMOR_peak_36031 chr3 134947925 134948284 + 17.08225 NA intron (NM_004441, intron 12 of 15) MIR|SINE|MIR 434005 NM_004441 2047 Hs.116092 NM_004441 HPRD:02790 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 13-PTNLD9-TUMOR_peak_18928 chr16 29416252 29416422 + 17.07292 NA Intergenic Intergenic -44329 NR_002454 606724 Hs.744975 NR_002454 LOC606724 - coronin, actin binding protein, 1A pseudogene pseudo 13-PTNLD9-TUMOR_peak_51763 chr8 121094806 121095111 + 17.06439 NA Intergenic Intergenic -42389 NM_021110 7373 Hs.409662 NM_021110 HPRD:00379 COL14A1 UND collagen, type XIV, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_32494 chr21 44917998 44918305 + 17.06439 NA Intergenic Intergenic -20048 NR_026863 114038 Hs.592161 NM_153752 HPRD:10770 LINC00313 C21orf84|NCRNA00313 long intergenic non-protein coding RNA 313 ncRNA 13-PTNLD9-TUMOR_peak_1088 chr1 35971523 35972058 + 17.06439 NA intron (NM_024874, intron 3 of 20) intron (NM_024874, intron 3 of 20) 51247 NM_024874 79932 Hs.456507 NM_024874 HPRD:11164 KIAA0319L - KIAA0319-like protein-coding 13-PTNLD9-TUMOR_peak_22079 chr17 74655969 74656155 + 17.06439 NA Intergenic Intergenic -16142 NR_110309 55808 Hs.105352 NM_018414 HPRD:15340 ST6GALNAC1 HSY11339|SIAT7A|ST6GalNAcI|STYI ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_36336 chr3 149105921 149106079 + 17.06249 NA Intergenic MIR|SINE|MIR -10432 NM_014220 4071 Hs.351316 NM_014220 HPRD:01854 TM4SF1 H-L6|L6|M3S1|TAAL6 transmembrane 4 L six family member 1 protein-coding 13-PTNLD9-TUMOR_peak_25950 chr2 1725550 1725871 + 17.06190 NA intron (NM_012293, intron 1 of 22) intron (NM_012293, intron 1 of 22) 22609 NM_012293 7837 Hs.332197 NM_012293 ENSG00000130508 PXDN COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO peroxidasin homolog (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_35344 chr3 111621966 111622204 + 17.06190 NA intron (NM_001134437, intron 3 of 17) intron (NM_001134437, intron 3 of 17) 43517 NM_001134439 90102 Hs.603252 NM_145753 HPRD:06611 PHLDB2 LL5b|LL5beta pleckstrin homology-like domain, family B, member 2 protein-coding 13-PTNLD9-TUMOR_peak_44008 chr6 18156285 18156569 + 17.05434 NA intron (NM_153042, intron 2 of 17) intron (NM_153042, intron 2 of 17) 808 NM_153042 221656 Hs.709336 NM_153042 HPRD:18524 KDM1B AOF1|C6orf193|LSD2|bA204B7.3|dJ298J15.2 lysine (K)-specific demethylase 1B protein-coding 13-PTNLD9-TUMOR_peak_28028 chr2 111206711 111206979 + 17.05266 NA intron (NR_038099, intron 8 of 8).2 intron (NR_038099, intron 8 of 8).2 23807 NR_027467 96626 Hs.535619 NM_033514 HPRD:17277 LIMS3 PINCH-3 LIM and senescent cell antigen-like domains 3 protein-coding 13-PTNLD9-TUMOR_peak_54071 chr9 97675224 97675481 + 17.04720 NA intron (NM_032823, intron 5 of 14) intron (NM_032823, intron 5 of 14) 103108 NR_031755 100313780 NR_031755 MIR2278 - microRNA 2278 ncRNA 13-PTNLD9-TUMOR_peak_6532 chr10 13771145 13771400 + 17.04720 NA intron (NM_018027, intron 12 of 24) intron (NM_018027, intron 12 of 24) 142333 NM_003675 8559 Hs.729158 NM_003675 HPRD:05407 PRPF18 PRP18|hPrp18 pre-mRNA processing factor 18 protein-coding 13-PTNLD9-TUMOR_peak_48166 chr7 81813034 81813247 + 17.04720 NA intron (NM_000722, intron 3 of 38) intron (NM_000722, intron 3 of 38) 174647 NR_110077 101927356 Hs.571348 NR_110076 ENSG00000223770 LOC101927356 - uncharacterized LOC101927356 ncRNA 13-PTNLD9-TUMOR_peak_7189 chr10 45431040 45431376 + 17.04720 NA TTS (NM_001123376) TTS (NM_001123376) 23929 NR_033842 220980 Hs.568801 NR_033842 ENSG00000224812 TMEM72-AS1 - TMEM72 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_52212 chr8 135697545 135697741 + 17.04720 NA intron (NM_001289394, intron 1 of 16) intron (NM_001289394, intron 1 of 16) 11158 NM_001174158 57623 Hs.446172 NM_020863 HPRD:11712 ZFAT AITD3|ZFAT1|ZNF406 zinc finger and AT hook domain containing protein-coding 13-PTNLD9-TUMOR_peak_48012 chr7 75574772 75574946 + 17.04270 NA intron (NM_000941, intron 1 of 15) intron (NM_000941, intron 1 of 15) 1758 NR_002955 677801 Hs.689708 NR_002955 ENSG00000201643 SNORA14A ACA14a small nucleolar RNA, H/ACA box 14A snoRNA 13-PTNLD9-TUMOR_peak_41522 chr5 92525419 92525863 + 17.03288 NA Intergenic Intergenic 381408 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_28095 chr2 113232792 113233029 + 17.03176 NA Intergenic MER115|DNA|hAT-Tip100 -6833 NM_153712 150465 Hs.358997 NM_153712 TTL - tubulin tyrosine ligase protein-coding 13-PTNLD9-TUMOR_peak_43824 chr6 12585784 12586094 + 17.03176 NA Intergenic Intergenic -131098 NM_001242648 221692 Hs.436996 NM_030948 PHACTR1 RPEL|RPEL1|dJ257A7.2 phosphatase and actin regulator 1 protein-coding 13-PTNLD9-TUMOR_peak_2103 chr1 66748015 66748282 + 17.03176 NA intron (NM_001297440, intron 6 of 15) intron (NM_001297440, intron 6 of 15) -49643 NM_001037339 5142 Hs.198072 NM_002600 HPRD:02528 PDE4B DPDE4|PDEIVB phosphodiesterase 4B, cAMP-specific protein-coding 13-PTNLD9-TUMOR_peak_21897 chr17 70403689 70403922 + 17.03176 NA intron (NR_036488, intron 3 of 3) intron (NR_036488, intron 3 of 3) 185138 NR_036488 100499467 Hs.157726 NR_036488 LINC00673 LINC00511 long intergenic non-protein coding RNA 673 ncRNA 13-PTNLD9-TUMOR_peak_30654 chr20 25117385 25117634 + 17.03176 NA Intergenic MLT1F|LTR|ERVL-MaLR 11120 NR_027093 284798 Hs.334934 NR_027091 ENSG00000230725 LOC284798 - uncharacterized LOC284798 ncRNA 13-PTNLD9-TUMOR_peak_5005 chr1 202016280 202016492 + 17.02694 NA Intergenic L2b|LINE|L2 36696 NM_001114309 1999 Hs.603657 NM_004433 HPRD:03722 ELF3 EPR-1|ERT|ESE-1|ESX E74-like factor 3 (ets domain transcription factor, epithelial-specific ) protein-coding 13-PTNLD9-TUMOR_peak_7211 chr10 46222930 46223135 + 17.02694 NA intron (NM_001169106, intron 2 of 28) CpG-2778 384 NM_001169107 253725 Hs.365286 NM_015262 HPRD:11094 FAM21C FAM21A|VPEF family with sequence similarity 21, member C protein-coding 13-PTNLD9-TUMOR_peak_40583 chr5 34598320 34598610 + 17.02117 NA Intergenic Intergenic -57968 NM_015577 26064 Hs.431400 NM_015577 HPRD:09416 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 13-PTNLD9-TUMOR_peak_42942 chr5 169215182 169215388 + 17.02117 NA intron (NM_004946, intron 25 of 51) intron (NM_004946, intron 25 of 51) 151034 NM_004946 1794 Hs.586174 NM_004946 HPRD:09121 DOCK2 - dedicator of cytokinesis 2 protein-coding 13-PTNLD9-TUMOR_peak_52072 chr8 131207011 131207229 + 17.02117 NA intron (NM_018482, intron 5 of 29) MER1B|DNA|hAT-Charlie 101659 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_39929 chr4 183114124 183114383 + 17.02117 NA Intergenic Intergenic 23807 NR_031640 100302270 NR_031640 miRBase:MI0006372 MIR1305 MIRN1305|hsa-mir-1305 microRNA 1305 ncRNA 13-PTNLD9-TUMOR_peak_14061 chr12 121068424 121068672 + 17.02117 NA Intergenic Intergenic -9874 NM_001033677 9478 Hs.458482 NM_004276 ENSG00000157782 CABP1 CALBRAIN|HCALB_BR calcium binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_12213 chr12 13550005 13550185 + 17.02117 NA Intergenic L1PA3|LINE|L1 -20416 NR_036555 283422 Hs.448717 NM_182558 HPRD:08166 C12orf36 - chromosome 12 open reading frame 36 ncRNA 13-PTNLD9-TUMOR_peak_14432 chr13 24195405 24195702 + 17.02117 NA intron (NM_148957, intron 4 of 9) intron (NM_148957, intron 4 of 9) 42054 NM_001204458 55504 Hs.149168 NM_018647 HPRD:05838 TNFRSF19 TAJ|TAJ-alpha|TRADE|TROY tumor necrosis factor receptor superfamily, member 19 protein-coding 13-PTNLD9-TUMOR_peak_13399 chr12 79845896 79846053 + 17.02117 NA TTS (NM_001135806) TTS (NM_001135806) -4677 NR_049889 100847013 NR_049889 MIR5692B - microRNA 5692b ncRNA 13-PTNLD9-TUMOR_peak_42897 chr5 167229827 167230002 + 17.02117 NA intron (NM_001122679, intron 2 of 28) intron (NM_001122679, intron 2 of 28) 429463 NR_109894 101927862 Hs.659376 NR_109894 ENSG00000253978 CTB-178M22.2 - uncharacterized LOC101927862 ncRNA 13-PTNLD9-TUMOR_peak_25982 chr2 4720713 4721011 + 17.01867 NA Intergenic Intergenic -17050 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 13-PTNLD9-TUMOR_peak_13681 chr12 106070516 106070723 + 17.01867 NA Intergenic Intergenic -27362 NR_110108 101929110 Hs.145944 NR_110108 ENSG00000257859 CASC18 - cancer susceptibility candidate 18 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_50866 chr8 48236141 48236385 + 17.01867 NA intron (NR_104581, intron 5 of 16) MIR|SINE|MIR 62793 NM_001080394 23514 Hs.381058 NM_001080394 ENSG00000164808 SPIDR KIAA0146 scaffolding protein involved in DNA repair protein-coding 13-PTNLD9-TUMOR_peak_10780 chr11 81698991 81699189 + 17.01867 NA intron (NR_120571, intron 6 of 7) LTR76|LTR|ERV1 -97212 NR_036186 100422823 NR_036186 miRBase:MI0015831 MIR4300 - microRNA 4300 ncRNA 13-PTNLD9-TUMOR_peak_7734 chr10 74436249 74436448 + 17.01867 NA Intergenic Intergenic -15541 NR_073062 90550 Hs.591366 NM_138357 HPRD:10696 MCU C10orf42|CCDC109A mitochondrial calcium uniporter protein-coding 13-PTNLD9-TUMOR_peak_41372 chr5 77814392 77814551 + 17.01867 NA intron (NM_005779, intron 3 of 4) intron (NM_005779, intron 3 of 4) 130177 NM_005779 10184 Hs.79299 NM_005779 HPRD:17272 LHFPL2 - lipoma HMGIC fusion partner-like 2 protein-coding 13-PTNLD9-TUMOR_peak_46084 chr6 134401412 134401688 + 17.01867 NA Intergenic MER72|LTR|ERV1 -27761 NM_145176 154091 Hs.486508 NM_145176 SLC2A12 GLUT12|GLUT8 solute carrier family 2 (facilitated glucose transporter), member 12 protein-coding 13-PTNLD9-TUMOR_peak_51024 chr8 61368103 61368408 + 17.01867 NA Intergenic L2b|LINE|L2 -41878 NR_103854 100505532 Hs.720321 NR_103854 LINC01301 - long intergenic non-protein coding RNA 1301 ncRNA 13-PTNLD9-TUMOR_peak_35327 chr3 111454186 111454561 + 17.01711 NA intron (NM_001134437, intron 1 of 17) intron (NM_001134437, intron 1 of 17) 3046 NM_001134437 90102 Hs.603252 NM_145753 HPRD:06611 PHLDB2 LL5b|LL5beta pleckstrin homology-like domain, family B, member 2 protein-coding 13-PTNLD9-TUMOR_peak_3270 chr1 145075362 145076008 + 17.01487 NA exon (NM_022359, exon 1 of 7) exon (NM_022359, exon 1 of 7) 501 NM_022359 9659 Hs.584841 NM_014644 HPRD:10482 PDE4DIP CMYA2|MMGL phosphodiesterase 4D interacting protein protein-coding 13-PTNLD9-TUMOR_peak_9634 chr11 44596311 44596492 + 17.01237 NA intron (NM_001024844, intron 1 of 8) L1ME4a|LINE|L1 9260 NM_001024844 3732 Hs.527778 NM_002231 CD82 4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27 CD82 molecule protein-coding 13-PTNLD9-TUMOR_peak_45014 chr6 42086277 42086719 + 17.00578 NA intron (NM_001164446, intron 2 of 4) intron (NM_001164446, intron 2 of 4) 24217 NM_001164446 647024 Hs.444277 NM_001164446 ENSG00000188112 C6orf132 bA7K24.2 chromosome 6 open reading frame 132 protein-coding 13-PTNLD9-TUMOR_peak_6143 chr1 245423862 245424172 + 16.99734 NA intron (NM_018012, intron 2 of 14) intron (NM_018012, intron 2 of 14) 105730 NM_018012 55083 Hs.368096 NM_018012 ENSG00000162849 KIF26B - kinesin family member 26B protein-coding 13-PTNLD9-TUMOR_peak_28038 chr2 111371647 111371845 + 16.99072 NA Intergenic Intergenic -35437 NM_032260 84220 Hs.469630 NM_005054 HPRD:04128 RGPD5 BS-63|BS63|HEL161|RGP5 RANBP2-like and GRIP domain containing 5 protein-coding 13-PTNLD9-TUMOR_peak_17931 chr15 89164427 89164592 + 16.99067 NA promoter-TSS (NM_022767) promoter-TSS (NM_022767) -18 NM_022767 64782 Hs.436102 NM_022767 HPRD:08573 AEN ISG20L1|pp12744 apoptosis enhancing nuclease protein-coding 13-PTNLD9-TUMOR_peak_46779 chr7 5279938 5280057 + 16.99067 NA Intergenic Intergenic 26097 NM_001033520 26100 Hs.122363 NM_015610 HPRD:15679 WIPI2 ATG18B|Atg21|WIPI-2 WD repeat domain, phosphoinositide interacting 2 protein-coding 13-PTNLD9-TUMOR_peak_29592 chr2 204400117 204400441 + 16.99067 NA promoter-TSS (NM_203365) promoter-TSS (NM_203365) -221 NM_203365 65059 Hs.471162 NM_025252 HPRD:12356 RAPH1 ALS2CR18|ALS2CR9|LPD|PREL-2|PREL2|RMO1|RalGDS/AF-6 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 protein-coding 13-PTNLD9-TUMOR_peak_50358 chr8 23608758 23609181 + 16.99067 NA Intergenic Intergenic -44858 NM_001136271 137814 Hs.532654 NM_001136271 ENSG00000180053 NKX2-6 CSX2|CTHM|NKX2F|NKX4-2 NK2 homeobox 6 protein-coding 13-PTNLD9-TUMOR_peak_26440 chr2 28819633 28819810 + 16.99067 NA intron (NM_001170585, intron 32 of 56) intron (NM_001170585, intron 32 of 56) 100783 NM_153021 151056 Hs.444933 NM_153021 HPRD:15141 PLB1 PLB|PLB/LIP|hPLB phospholipase B1 protein-coding 13-PTNLD9-TUMOR_peak_31336 chr20 47513937 47514195 + 16.99067 NA Intergenic L1MB7|LINE|L1 -24209 NM_006420 10564 Hs.62578 NM_006420 HPRD:09250 ARFGEF2 BIG2|PVNH2|dJ1164I10.1 ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited) protein-coding 13-PTNLD9-TUMOR_peak_7907 chr10 85939110 85939439 + 16.98490 NA intron (NM_207373, intron 2 of 2) intron (NM_207373, intron 2 of 2) 5720 NM_207373 387695 Hs.298713 NM_207373 HPRD:12599 C10orf99 UNQ1833 chromosome 10 open reading frame 99 protein-coding 13-PTNLD9-TUMOR_peak_44632 chr6 32805988 32806168 + 16.98490 NA intron (NM_018833, intron 1 of 11).4 intron (NM_018833, intron 1 of 11).4 469 NM_018833 6891 Hs.502 NM_000544 HPRD:01360 TAP2 ABC18|ABCB3|APT2|D6S217E|PSF-2|PSF2|RING11 transporter 2, ATP-binding cassette, sub-family B (MDR/TAP) protein-coding 13-PTNLD9-TUMOR_peak_30310 chr20 3202587 3202908 + 16.98490 NA intron (NM_181493, intron 7 of 7) intron (NM_181493, intron 7 of 7) 12613 NM_181493 3704 Hs.415299 NM_033453 HPRD:08856 ITPA C20orf37|HLC14-06-P|dJ794I6.3 inosine triphosphatase (nucleoside triphosphate pyrophosphatase) protein-coding 13-PTNLD9-TUMOR_peak_28075 chr2 112416974 112417568 + 16.98490 NA Intergenic MER21C|LTR|ERVL -164579 NR_024373 541471 Hs.560805 NR_015395 ENSG00000172965 MIR4435-1HG AGD2|LINC00978 MIR4435-1 host gene (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_49689 chr7 151419064 151419294 + 16.98490 NA intron (NM_001040633, intron 3 of 15) intron (NM_001040633, intron 3 of 15) -89835 NM_024429 51422 Hs.647072 NM_016203 HPRD:04119 PRKAG2 AAKG|AAKG2|CMH6|H91620p|WPWS protein kinase, AMP-activated, gamma 2 non-catalytic subunit protein-coding 13-PTNLD9-TUMOR_peak_32808 chr22 20960616 20960944 + 16.97016 NA Intergenic Intergenic -83063 NR_024592 266697 Hs.558711 NR_024592 POM121L4P - POM121 transmembrane nucleoporin-like 4 pseudogene pseudo 13-PTNLD9-TUMOR_peak_14756 chr13 50265542 50265824 + 16.97016 NA promoter-TSS (NM_001278636) promoter-TSS (NM_001278636) -60 NM_032565 84650 Hs.433278 NM_032565 HPRD:13258 EBPL EBRP emopamil binding protein-like protein-coding 13-PTNLD9-TUMOR_peak_3558 chr1 150480432 150480579 + 16.97016 NA promoter-TSS (NM_004425) promoter-TSS (NM_004425) 18 NM_022664 1893 Hs.81071 NM_004425 HPRD:03727 ECM1 URBWD extracellular matrix protein 1 protein-coding 13-PTNLD9-TUMOR_peak_13510 chr12 95510643 95510883 + 16.97016 NA intron (NM_018351, intron 8 of 20) intron (NM_018351, intron 8 of 20) -43359 NM_001032287 7181 Hs.108301 NM_003297 HPRD:03318 NR2C1 TR2 nuclear receptor subfamily 2, group C, member 1 protein-coding 13-PTNLD9-TUMOR_peak_33579 chr3 4753167 4753311 + 16.97016 NA intron (NM_001168272, intron 37 of 60) intron (NM_001168272, intron 37 of 60) 40035 NR_004428 100126791 Hs.663059 NR_004428 ENSG00000235947 EGOT EGO|NCRNA00190 eosinophil granule ontogeny transcript (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_30565 chr20 19973656 19973885 + 16.96238 NA intron (NM_001242581, intron 10 of 11) intron (NM_001242581, intron 10 of 11) -24164 NM_181528 51126 Hs.368783 NM_016100 HPRD:07136 NAA20 NAT3|NAT3P|NAT5|NAT5P|dJ1002M8.1 N(alpha)-acetyltransferase 20, NatB catalytic subunit protein-coding 13-PTNLD9-TUMOR_peak_54506 chr9 116327652 116327989 + 16.96238 NA intron (NM_134427, intron 1 of 4) intron (NM_134427, intron 1 of 4) 586 NM_134427 5998 Hs.494875 NM_017790 HPRD:03720 RGS3 C2PA|RGP3 regulator of G-protein signaling 3 protein-coding 13-PTNLD9-TUMOR_peak_40372 chr5 14156682 14156986 + 16.96238 NA intron (NM_007118, intron 1 of 56) intron (NM_007118, intron 1 of 56) 13005 NM_007118 7204 Hs.130031 NM_007118 HPRD:03537 TRIO ARHGEF23|tgat trio Rho guanine nucleotide exchange factor protein-coding 13-PTNLD9-TUMOR_peak_1578 chr1 45731904 45732311 + 16.96035 NA Intergenic LTR18B|LTR|ERVL -37475 NR_024270 400752 Hs.334348 NR_024270 LINC01144 - long intergenic non-protein coding RNA 1144 ncRNA 13-PTNLD9-TUMOR_peak_45295 chr6 52612128 52612501 + 16.96035 NA Intergenic MLT1D|LTR|ERVL-MaLR -2357 NR_033760 730152 Hs.739662 NR_033760 GSTA7P GSTAP2|GSTAP6 glutathione S-transferase alpha 7, pseudogene pseudo 13-PTNLD9-TUMOR_peak_37000 chr3 184445306 184445507 + 16.95393 NA Intergenic Intergenic -15570 NM_022149 64110 Hs.306123 NM_022149 HPRD:14348 MAGEF1 - melanoma antigen family F, 1 protein-coding 13-PTNLD9-TUMOR_peak_9642 chr11 44863823 44864123 + 16.95393 NA intron (NM_130783, intron 1 of 8) intron (NM_130783, intron 1 of 8) 77997 NM_130783 90139 Hs.385634 NM_130783 HPRD:17435 TSPAN18 TSPAN tetraspanin 18 protein-coding 13-PTNLD9-TUMOR_peak_6901 chr10 33562267 33562655 + 16.95393 NA intron (NM_001024628, intron 2 of 11) intron (NM_001024628, intron 2 of 11) 61372 NM_003873 8829 Hs.131704 NM_003873 HPRD:03642 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 13-PTNLD9-TUMOR_peak_5056 chr1 203016262 203016645 + 16.95393 NA Intergenic MIR3|SINE|MIR -3858 NM_015053 8497 Hs.153648 NM_015053 HPRD:16012 PPFIA4 - protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4 protein-coding 13-PTNLD9-TUMOR_peak_24831 chr19 37407115 37407467 + 16.95393 NA promoter-TSS (NM_001171979) promoter-TSS (NM_001171979) 60 NM_001204836 374900 Hs.404220 NM_198539 HPRD:15848 ZNF568 - zinc finger protein 568 protein-coding 13-PTNLD9-TUMOR_peak_11049 chr11 102027947 102028234 + 16.95393 NA intron (NM_001282098, intron 2 of 6) intron (NM_001282098, intron 2 of 6) 44919 NM_001195045 10413 Hs.503692 NM_006106 HPRD:09424 YAP1 COB1|YAP|YAP2|YAP65|YKI Yes-associated protein 1 protein-coding 13-PTNLD9-TUMOR_peak_43069 chr5 172974665 172974848 + 16.95393 NA Intergenic MLT1I|LTR|ERVL-MaLR -31881 NR_027108 285593 Hs.409730 NR_027108 ENSG00000253955 LOC285593 - uncharacterized LOC285593 ncRNA 13-PTNLD9-TUMOR_peak_9112 chr11 12791683 12791827 + 16.94392 NA intron (NM_021961, intron 3 of 12) intron (NM_021961, intron 3 of 12) 95786 NM_021961 7003 Hs.655331 NM_021961 HPRD:01802 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain family member 1 (SV40 transcriptional enhancer factor) protein-coding 13-PTNLD9-TUMOR_peak_31081 chr20 39945279 39945478 + 16.94260 NA Intergenic Intergenic -16639 NM_015035 23051 Hs.380133 NM_015035 HPRD:10320 ZHX3 TIX1 zinc fingers and homeoboxes 3 protein-coding 13-PTNLD9-TUMOR_peak_30720 chr20 30104047 30104355 + 16.94252 NA intron (NM_178580, intron 1 of 12) L2c|LINE|L2 1988 NM_178582 81502 Hs.373741 NM_030789 HPRD:06166 HM13 H13|IMP1|IMPAS|IMPAS-1|MSTP086|PSENL3|PSL3|SPP|SPPL1|dJ324O17.1 histocompatibility (minor) 13 protein-coding 13-PTNLD9-TUMOR_peak_3878 chr1 155618135 155618565 + 16.93681 NA Intergenic (TTC)n|Simple_repeat|Simple_repeat 31270 NM_001198899 55249 Hs.584927 NM_018253 HPRD:08485 YY1AP1 HCCA1|HCCA2|YAP|YY1AP YY1 associated protein 1 protein-coding 13-PTNLD9-TUMOR_peak_37757 chr4 5889032 5889373 + 16.93681 NA 5' UTR (NM_001288662, exon 1 of 14) 5' UTR (NM_001288662, exon 1 of 14) 338 NM_001288662 1400 Hs.135270 NM_001313 HPRD:03913 CRMP1 CRMP-1|DPYSL1|DRP-1|DRP1|ULIP-3 collapsin response mediator protein 1 protein-coding 13-PTNLD9-TUMOR_peak_28589 chr2 138266475 138266686 + 16.93681 NA intron (NM_001080427, intron 14 of 26) FordPrefect_a|DNA|hAT-Tip100 418922 NR_120402 101928273 Hs.560928 NR_120402 ENSG00000234007 LOC101928273 - uncharacterized LOC101928273 ncRNA 13-PTNLD9-TUMOR_peak_32877 chr22 22429165 22429416 + 16.93477 NA Intergenic Intergenic -92050 NM_001282113 8940 Hs.436401 NM_003935 HPRD:04662 TOP3B TOP3B1 topoisomerase (DNA) III beta protein-coding 13-PTNLD9-TUMOR_peak_4530 chr1 178103314 178103516 + 16.93477 NA intron (NM_170692, intron 1 of 17) MLT1F1|LTR|ERVL-MaLR -40287 NR_027982 100302401 Hs.736117 NR_027982 ENSG00000224687 RASAL2-AS1 - RASAL2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_56628 chrX 151039799 151040070 + 16.93477 NA Intergenic Intergenic -41427 NM_001011548 4103 Hs.37107 NM_002362 HPRD:02167 MAGEA4 CT1.4|MAGE-41|MAGE-X2|MAGE4|MAGE4A|MAGE4B melanoma antigen family A, 4 protein-coding 13-PTNLD9-TUMOR_peak_37381 chr3 195424843 195424970 + 16.93085 NA intron (NR_122105, intron 2 of 4) L2|LINE|L2 -1366 NR_030296 693155 NR_030296 miRBase:MI0003577 MIR570 MIRN570|hsa-mir-570 microRNA 570 ncRNA 13-PTNLD9-TUMOR_peak_50610 chr8 37548887 37549196 + 16.92413 NA Intergenic L2c|LINE|L2 -4260 NM_025069 80139 Hs.744591 NM_025069 ZNF703 ZEPPO1|ZNF503L|ZPO1 zinc finger protein 703 protein-coding 13-PTNLD9-TUMOR_peak_5572 chr1 224390987 224391260 + 16.92413 NA Intergenic Intergenic 9858 NR_110669 101927143 Hs.638720 NR_110669 ENSG00000232628 LOC101927143 - uncharacterized LOC101927143 ncRNA 13-PTNLD9-TUMOR_peak_46011 chr6 125523158 125523637 + 16.90901 NA intron (NM_001292026, intron 1 of 4) intron (NM_001292026, intron 1 of 4) 47977 NM_001003395 7164 Hs.591347 NM_003287 HPRD:07236 TPD52L1 D53|hD53 tumor protein D52-like 1 protein-coding 13-PTNLD9-TUMOR_peak_44982 chr6 41649964 41650144 + 16.90901 NA Intergenic Intergenic 43859 NM_001300805 4188 Hs.520119 NM_005586 HPRD:07280 MDFI I-MF|I-mfa MyoD family inhibitor protein-coding 13-PTNLD9-TUMOR_peak_34683 chr3 53304102 53304415 + 16.90901 NA Intergenic Intergenic -14128 NR_047580 7086 Hs.89643 NM_001064 HPRD:06001 TKT HEL107|TK|TKT1 transketolase protein-coding 13-PTNLD9-TUMOR_peak_39681 chr4 154127037 154127215 + 16.90901 NA intron (NM_015271, intron 1 of 11) intron (NM_015271, intron 1 of 11) 1528 NM_015271 23321 Hs.435711 NM_015271 HPRD:10279 TRIM2 CMT2R|RNF86 tripartite motif containing 2 protein-coding 13-PTNLD9-TUMOR_peak_19973 chr16 85350080 85350267 + 16.90901 NA Intergenic Intergenic -10242 NR_049816 100847022 NR_049816 miRBase:MI0017982 MIR5093 - microRNA 5093 ncRNA 13-PTNLD9-TUMOR_peak_47404 chr7 46193654 46194096 + 16.90901 NA Intergenic AmnSINE1|SINE|Deu -233004 NM_001013398 3486 Hs.450230 NM_000598 HPRD:00899 IGFBP3 BP-53|IBP3 insulin-like growth factor binding protein 3 protein-coding 13-PTNLD9-TUMOR_peak_28549 chr2 134934981 134935273 + 16.90901 NA Intergenic Intergenic 50431 NR_037450 100500878 NR_037450 miRBase:MI0016080 MIR3679 - microRNA 3679 ncRNA 13-PTNLD9-TUMOR_peak_26606 chr2 37995669 37996032 + 16.90847 NA Intergenic Intergenic 61004 NR_110011 101929559 Hs.468200 NR_110011 ENSG00000237803 LINC00211 NCRNA00211 long intergenic non-protein coding RNA 211 ncRNA 13-PTNLD9-TUMOR_peak_26656 chr2 39722051 39722403 + 16.90847 NA intron (NR_037875, intron 3 of 5) intron (NR_037875, intron 3 of 5) 57670 NR_037875 728730 Hs.655344 NR_037875 ENSG00000231312 LOC728730 - uncharacterized LOC728730 ncRNA 13-PTNLD9-TUMOR_peak_21076 chr17 40264680 40264840 + 16.90847 NA promoter-TSS (NM_024119) promoter-TSS (NM_024119) -9 NM_024119 79132 Hs.55918 NM_024119 HPRD:13115 DHX58 D11LGP2|D11lgp2e|LGP2|RLR-3 DEXH (Asp-Glu-X-His) box polypeptide 58 protein-coding 13-PTNLD9-TUMOR_peak_5262 chr1 206507326 206507567 + 16.90536 NA Intergenic Intergenic -8754 NM_001271870 647135 Hs.497575 NM_001271870 SRGAP2B SRGAP2L|SRGAP2P2 SLIT-ROBO Rho GTPase activating protein 2B protein-coding 13-PTNLD9-TUMOR_peak_5281 chr1 206686140 206686390 + 16.90536 NA intron (NM_182663, intron 1 of 5) intron (NM_182663, intron 1 of 5) 5402 NM_182663 83593 Hs.497579 NM_031437 HPRD:06117 RASSF5 Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3 Ras association (RalGDS/AF-6) domain family member 5 protein-coding 13-PTNLD9-TUMOR_peak_22377 chr17 81066830 81067044 + 16.90091 NA Intergenic Intergenic 29370 NM_001004431 284207 Hs.378821 NM_001004431 HPRD:11255 METRNL - meteorin, glial cell differentiation regulator-like protein-coding 13-PTNLD9-TUMOR_peak_49343 chr7 139174992 139175268 + 16.89739 NA Intergenic Intergenic -6673 NM_198508 346689 Hs.17572 NM_198508 KLRG2 CLEC15B killer cell lectin-like receptor subfamily G, member 2 protein-coding 13-PTNLD9-TUMOR_peak_10993 chr11 96040140 96040343 + 16.88865 NA intron (NM_032427, intron 1 of 4) intron (NM_032427, intron 1 of 4) -34361 NR_036125 100422991 NR_036125 miRBase:MI0014197 MIR1260B - microRNA 1260b ncRNA 13-PTNLD9-TUMOR_peak_31643 chr20 55363409 55363590 + 16.88865 NA Intergenic Intergenic 159141 NM_003222 7022 Hs.473152 NM_003222 HPRD:03361 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma) protein-coding 13-PTNLD9-TUMOR_peak_27245 chr2 71644030 71644207 + 16.88675 NA intron (NM_001014972, intron 20 of 27) L1HS|LINE|L1 -36635 NM_001130981 8291 Hs.252180 NM_003494 HPRD:04307 DYSF FER1L1|LGMD2B|MMD1 dysferlin protein-coding 13-PTNLD9-TUMOR_peak_23624 chr19 1415543 1415684 + 16.88675 NA intron (NM_170711, intron 1 of 12) intron (NM_170711, intron 1 of 12) 8045 NM_018959 26528 Hs.222510 NM_018959 HPRD:08462 DAZAP1 - DAZ associated protein 1 protein-coding 13-PTNLD9-TUMOR_peak_13324 chr12 71576907 71577115 + 16.88675 NA Intergenic L2b|LINE|L2 -25232 NM_004616 7103 Hs.170563 NM_004616 HPRD:02865 TSPAN8 CO-029|TM4SF3 tetraspanin 8 protein-coding 13-PTNLD9-TUMOR_peak_37630 chr4 2673216 2673571 + 16.88675 NA intron (NR_046335, intron 10 of 18) L1M4|LINE|L1 46234 NM_001256666 8603 Hs.652364 NM_003704 HPRD:09850 FAM193A C4orf8 family with sequence similarity 193, member A protein-coding 13-PTNLD9-TUMOR_peak_744 chr1 26217083 26217342 + 16.87836 NA intron (NM_001145454, intron 4 of 4) LTR22A|LTR|ERVK 15432 NM_203401 3925 Hs.209983 NM_005563 HPRD:01047 STMN1 C1orf215|LAP18|Lag|OP18|PP17|PP19|PR22|SMN stathmin 1 protein-coding 13-PTNLD9-TUMOR_peak_32260 chr21 37565610 37565831 + 16.87836 NA intron (NM_005128, intron 2 of 36) MER39|LTR|ERV1 28881 NM_005128 9980 Hs.204575 NM_005128 HPRD:07271 DOPEY2 21orf5|C21orf5 dopey family member 2 protein-coding 13-PTNLD9-TUMOR_peak_37925 chr4 9036264 9036501 + 16.87836 NA Intergenic LTR5A|LTR|ERVK 84905 NM_001040071 650293 Hs.535167 NM_001040071 LOC650293 - seven transmembrane helix receptor protein-coding 13-PTNLD9-TUMOR_peak_48439 chr7 98759930 98760320 + 16.87836 NA Intergenic Intergenic -18382 NM_001199847 57154 Hs.189329 NM_020429 HPRD:06902 SMURF1 - SMAD specific E3 ubiquitin protein ligase 1 protein-coding 13-PTNLD9-TUMOR_peak_56109 chrX 70980903 70981166 + 16.87836 NA Intergenic Intergenic -2106 NM_001145140 100130361 Hs.632817 NM_001145140 CXorf49 CXorf49B chromosome X open reading frame 49 protein-coding 13-PTNLD9-TUMOR_peak_28458 chr2 131774825 131775051 + 16.87836 NA intron (NM_032995, intron 3 of 11) intron (NM_032995, intron 3 of 11) 76066 NM_001009993 130074 Hs.534679 NM_001009993 HPRD:17295 FAM168B MANI family with sequence similarity 168, member B protein-coding 13-PTNLD9-TUMOR_peak_54504 chr9 116310463 116310849 + 16.87836 NA intron (NM_001276261, intron 10 of 14) intron (NM_001276261, intron 10 of 14) 11899 NM_001276260 5998 Hs.494875 NM_017790 HPRD:03720 RGS3 C2PA|RGP3 regulator of G-protein signaling 3 protein-coding 13-PTNLD9-TUMOR_peak_12849 chr12 53168572 53168908 + 16.87037 NA intron (NM_015848, intron 2 of 8) intron (NM_015848, intron 2 of 8) 2389 NM_015848 51350 Hs.654392 NM_015848 HPRD:17123 KRT76 HUMCYT2A|KRT2B|KRT2P keratin 76 protein-coding 13-PTNLD9-TUMOR_peak_19708 chr16 70987754 70987998 + 16.87037 NA intron (NM_001270974, intron 40 of 85) intron (NM_001270974, intron 40 of 85) -152815 NM_018052 55697 Hs.445061 NM_018052 HPRD:07660 VAC14 ArPIKfyve|TAX1BP2|TRX Vac14 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_19719 chr16 71394407 71394622 + 16.87037 NA intron (NR_027910, intron 1 of 9) intron (NR_027910, intron 1 of 9) 1898 NM_007088 794 Hs.106857 NM_001740 HPRD:00230 CALB2 CAB29|CAL2|CR calbindin 2 protein-coding 13-PTNLD9-TUMOR_peak_4112 chr1 160844825 160845006 + 16.87037 NA Intergenic Intergenic 10045 NM_017625 55600 Hs.50813 NM_017625 HPRD:17165 ITLN1 HL-1|HL1|INTL|ITLN|LFR|hIntL|omentin intelectin 1 (galactofuranose binding) protein-coding 13-PTNLD9-TUMOR_peak_28649 chr2 145115608 145115833 + 16.87037 NA Intergenic Intergenic -25619 NM_001284234 79712 Hs.44780 NM_024659 HPRD:13615 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase-like domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_20497 chr17 12634295 12634514 + 16.85886 NA intron (NM_001146312, intron 5 of 13) intron (NM_001146312, intron 5 of 13) -24952 NR_104605 101928418 Hs.620346 NR_104605 ENSG00000227274 LOC101928418 - uncharacterized LOC101928418 ncRNA 13-PTNLD9-TUMOR_peak_42090 chr5 133463139 133463523 + 16.85886 NA intron (NR_033449, intron 1 of 7) intron (NR_033449, intron 1 of 7) 11981 NR_033449 6932 Hs.573153 NM_003202 HPRD:01797 TCF7 TCF-1 transcription factor 7 (T-cell specific, HMG-box) protein-coding 13-PTNLD9-TUMOR_peak_6895 chr10 33294262 33294499 + 16.85692 NA Intergenic Intergenic -47087 NM_002211 3688 Hs.643813 NM_002211 HPRD:00628 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) protein-coding 13-PTNLD9-TUMOR_peak_5800 chr1 230961152 230961328 + 16.85692 NA Intergenic MIR|SINE|MIR 30542 NM_001136495 84886 Hs.520494 NM_032800 HPRD:13359 C1orf198 - chromosome 1 open reading frame 198 protein-coding 13-PTNLD9-TUMOR_peak_51061 chr8 66940226 66940647 + 16.85692 NA intron (NM_033105, intron 1 of 5) intron (NM_033105, intron 1 of 5) 6645 NM_033105 85479 Hs.491885 NM_033105 HPRD:07474 DNAJC5B CSP-beta DnaJ (Hsp40) homolog, subfamily C, member 5 beta protein-coding 13-PTNLD9-TUMOR_peak_2153 chr1 68444911 68445227 + 16.84849 NA intron (NR_040077, intron 1 of 9) L2c|LINE|L2 71391 NM_004675 9077 Hs.194695 NM_004675 HPRD:05547 DIRAS3 ARHI|NOEY2 DIRAS family, GTP-binding RAS-like 3 protein-coding 13-PTNLD9-TUMOR_peak_2995 chr1 116810824 116811092 + 16.84849 NA Intergenic Intergenic -104837 NM_000701 476 Hs.371889 NM_000701 HPRD:01662 ATP1A1 - ATPase, Na+/K+ transporting, alpha 1 polypeptide protein-coding 13-PTNLD9-TUMOR_peak_13085 chr12 60197647 60197783 + 16.84849 NA Intergenic L1MC2|LINE|L1 114597 NR_073056 9194 Hs.88156 NM_004731 HPRD:06791 SLC16A7 MCT2 solute carrier family 16 (monocarboxylate transporter), member 7 protein-coding 13-PTNLD9-TUMOR_peak_28424 chr2 130559299 130559477 + 16.84849 NA Intergenic Intergenic -121362 NR_110285 101927924 Hs.570248 NR_110285 ENSG00000237574 LOC101927924 - uncharacterized LOC101927924 ncRNA 13-PTNLD9-TUMOR_peak_9073 chr11 11998850 11999067 + 16.84849 NA intron (NM_001018057, intron 3 of 6) intron (NM_001018057, intron 3 of 6) 31228 NM_001018057 27122 Hs.292156 NM_013253 HPRD:05659 DKK3 REIC|RIG dickkopf WNT signaling pathway inhibitor 3 protein-coding 13-PTNLD9-TUMOR_peak_22186 chr17 76912049 76912204 + 16.84849 NA intron (NM_003255, intron 1 of 4) intron (NM_003255, intron 1 of 4) 9346 NM_003255 7077 Hs.633514 NM_003255 HPRD:01784 TIMP2 CSC-21K|DDC8 TIMP metallopeptidase inhibitor 2 protein-coding 13-PTNLD9-TUMOR_peak_6713 chr10 24841339 24841561 + 16.84849 NA Intergenic Intergenic 86016 NM_001282770 56243 Hs.445885 NM_019590 HPRD:11132 KIAA1217 SKT KIAA1217 protein-coding 13-PTNLD9-TUMOR_peak_33077 chr22 30217361 30217719 + 16.84849 NA intron (NM_001242906, intron 4 of 18) MIRb|SINE|MIR 16753 NM_001242906 84164 Hs.731754 NM_032204 HPRD:16515 ASCC2 ASC1p100|p100 activating signal cointegrator 1 complex subunit 2 protein-coding 13-PTNLD9-TUMOR_peak_27403 chr2 85281046 85281224 + 16.84849 NA 3' UTR (NM_020122, exon 7 of 7) 3' UTR (NM_020122, exon 7 of 7) -79448 NM_031283 83439 Hs.516297 NM_031283 HPRD:06874 TCF7L1 TCF-3|TCF3 transcription factor 7-like 1 (T-cell specific, HMG-box) protein-coding 13-PTNLD9-TUMOR_peak_17981 chr15 91382545 91383015 + 16.84114 NA Intergenic Intergenic -29042 NM_002569 5045 Hs.513153 NM_002569 HPRD:00653 FURIN FUR|PACE|PCSK3|SPC1 furin (paired basic amino acid cleaving enzyme) protein-coding 13-PTNLD9-TUMOR_peak_42645 chr5 150006515 150006749 + 16.84114 NA intron (NM_001166208, intron 2 of 2) intron (NM_001166208, intron 2 of 2) 9426 NM_001166209 11346 Hs.435228 NM_007286 HPRD:12179 SYNPO - synaptopodin protein-coding 13-PTNLD9-TUMOR_peak_23536 chr18 77371046 77371242 + 16.84114 NA Intergenic Intergenic -68657 NM_004715 9150 Hs.465490 NM_004715 HPRD:05377 CTDP1 CCFDN|FCP1 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1 protein-coding 13-PTNLD9-TUMOR_peak_20786 chr17 27884471 27884942 + 16.84114 NA Intergenic Intergenic 9336 NM_198147 116236 Hs.106510 NM_198147 HPRD:14014 ABHD15 - abhydrolase domain containing 15 protein-coding 13-PTNLD9-TUMOR_peak_32142 chr21 33805554 33806010 + 16.82846 NA intron (NR_104472, intron 1 of 6) intron (NR_104472, intron 1 of 6) 21037 NR_104472 59271 Hs.208358 NM_058187 HPRD:10760 EVA1C B18|B19|C21orf63|C21orf64|FAM176C|SUE21 eva-1 homolog C (C. elegans) protein-coding 13-PTNLD9-TUMOR_peak_26263 chr2 20431403 20431729 + 16.82846 NA Intergenic Intergenic -6372 NM_001006946 6382 Hs.224607 NM_002997 HPRD:01718 SDC1 CD138|SDC|SYND1|syndecan syndecan 1 protein-coding 13-PTNLD9-TUMOR_peak_3644 chr1 151812128 151812640 + 16.82846 NA intron (NM_001136003, intron 1 of 1) CpG 649 NM_001136003 100191040 Hs.694717 NM_001136003 ENSG00000225556 C2CD4D FAM148D C2 calcium-dependent domain containing 4D protein-coding 13-PTNLD9-TUMOR_peak_28254 chr2 120997242 120997461 + 16.82846 NA Intergenic Intergenic -13063 NM_002881 5899 Hs.469820 NM_002881 HPRD:01550 RALB - v-ral simian leukemia viral oncogene homolog B protein-coding 13-PTNLD9-TUMOR_peak_50454 chr8 28041241 28041552 + 16.82279 NA intron (NM_001284224, intron 12 of 12) intron (NM_001284224, intron 12 of 12) 90812 NM_001284225 55140 Hs.491336 NM_018091 HPRD:10936 ELP3 KAT9 elongator acetyltransferase complex subunit 3 protein-coding 13-PTNLD9-TUMOR_peak_15936 chr14 61032034 61032341 + 16.82279 NA Intergenic MER5A|DNA|hAT-Charlie 56249 NM_007374 4990 Hs.194756 NM_007374 SIX6 MCOPCT2|OPTX2|Six9 SIX homeobox 6 protein-coding 13-PTNLD9-TUMOR_peak_29714 chr2 210245035 210245202 + 16.82279 NA Intergenic Intergenic -43653 NM_001039538 4133 Hs.368281 NM_002374 HPRD:01140 MAP2 MAP2A|MAP2B|MAP2C microtubule-associated protein 2 protein-coding 13-PTNLD9-TUMOR_peak_2581 chr1 95440419 95440641 + 16.82279 NA Intergenic MLT1G|LTR|ERVL-MaLR 46946 NR_033998 729970 Hs.297988 NR_033998 ENSG00000235501 LOC729970 - hCG2028352-like ncRNA 13-PTNLD9-TUMOR_peak_53219 chr9 38383490 38383832 + 16.82279 NA Intergenic Intergenic -9000 NM_000692 219 Hs.436219 NM_000692 HPRD:00005 ALDH1B1 ALDH5|ALDHX aldehyde dehydrogenase 1 family, member B1 protein-coding 13-PTNLD9-TUMOR_peak_15237 chr14 20869354 20869551 + 16.82039 NA intron (NM_007110, intron 8 of 54) intron (NM_007110, intron 8 of 54) 12127 NM_007110 7011 Hs.508835 NM_007110 HPRD:03404 TEP1 TLP1|TP1|TROVE1|VAULT2|p240 telomerase-associated protein 1 protein-coding 13-PTNLD9-TUMOR_peak_16495 chr14 95042302 95042521 + 16.82039 NA Intergenic MLT1C|LTR|ERVL-MaLR -5295 NM_000624 5104 Hs.159628 NM_000624 HPRD:03503 SERPINA5 PAI-3|PAI3|PCI|PCI-B|PLANH3|PROCI serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 5 protein-coding 13-PTNLD9-TUMOR_peak_19902 chr16 82104723 82104863 + 16.82039 NA intron (NM_002153, intron 3 of 4) intron (NM_002153, intron 3 of 4) 35935 NM_002153 3294 Hs.162795 NM_002153 HPRD:00186 HSD17B2 EDH17B2|HSD17|SDR9C2 hydroxysteroid (17-beta) dehydrogenase 2 protein-coding 13-PTNLD9-TUMOR_peak_46652 chr7 948595 949175 + 16.81754 NA intron (NM_001284311, intron 2 of 8) CpG 11641 NM_001284311 11033 Hs.602573 NM_006869 HPRD:09733 ADAP1 CENTA1|GCS1L|p42IP4 ArfGAP with dual PH domains 1 protein-coding 13-PTNLD9-TUMOR_peak_37061 chr3 186316242 186316544 + 16.81754 NA Intergenic Intergenic -14457 NM_001622 197 Hs.324746 NM_001622 HPRD:00727 AHSG A2HS|AHS|FETUA|HSGA alpha-2-HS-glycoprotein protein-coding 13-PTNLD9-TUMOR_peak_3680 chr1 152415330 152415683 + 16.80637 NA Intergenic Intergenic -28756 NM_016190 49860 Hs.242057 NM_016190 HPRD:12720 CRNN C1orf10|DRC1|PDRC1|SEP53 cornulin protein-coding 13-PTNLD9-TUMOR_peak_34032 chr3 20306448 20306661 + 16.80568 NA Intergenic LTR1D|LTR|ERV1 -77406 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 13-PTNLD9-TUMOR_peak_54994 chr9 136921108 136921580 + 16.80568 NA intron (NM_007371, intron 1 of 11) intron (NM_007371, intron 1 of 11) 11797 NM_007371 8019 Hs.522472 NM_007371 HPRD:03327 BRD3 ORFX|RING3L bromodomain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_55500 chrX 7050444 7050730 + 16.79704 NA intron (NM_001135565, intron 1 of 4) intron (NM_001135565, intron 1 of 4) -15314 NR_039924 100616467 NR_039924 miRBase:MI0017408 MIR4767 - microRNA 4767 ncRNA 13-PTNLD9-TUMOR_peak_15671 chr14 49337773 49337989 + 16.79704 NA Intergenic MLT1E3|LTR|ERVL-MaLR 715253 NM_001032 6235 Hs.156367 NM_001032 HPRD:04698 RPS29 DBA13|S29 ribosomal protein S29 protein-coding 13-PTNLD9-TUMOR_peak_37784 chr4 6666304 6666519 + 16.79704 NA Intergenic AluY|SINE|Alu -9410 NR_015433 93622 Hs.6815 NM_138699 LOC93622 - Morf4 family associated protein 1-like 1 pseudogene pseudo 13-PTNLD9-TUMOR_peak_52905 chr9 21854692 21854906 + 16.79704 NA exon (NM_002451, exon 6 of 8) exon (NM_002451, exon 6 of 8) 52164 NM_002451 4507 Hs.193268 NM_002451 HPRD:01134 MTAP BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus methylthioadenosine phosphorylase protein-coding 13-PTNLD9-TUMOR_peak_47085 chr7 24861104 24861326 + 16.79451 NA intron (NR_104111, intron 15 of 21) intron (NR_104111, intron 15 of 21) -63576 NM_001127454 1687 Hs.520708 NM_004403 HPRD:02996 DFNA5 ICERE-1 deafness, autosomal dominant 5 protein-coding 13-PTNLD9-TUMOR_peak_50652 chr8 38385555 38385855 + 16.79359 NA intron (NM_207412, intron 1 of 2) intron (NM_207412, intron 1 of 2) 475 NM_207412 389649 Hs.546586 NM_207412 HPRD:13474 C8orf86 - chromosome 8 open reading frame 86 protein-coding 13-PTNLD9-TUMOR_peak_35877 chr3 129680521 129680696 + 16.79359 NA Intergenic Intergenic -12628 NM_007117 7200 Hs.182231 NM_007117 HPRD:08944 TRH Pro-TRH|TRF thyrotropin-releasing hormone protein-coding 13-PTNLD9-TUMOR_peak_22009 chr17 73641682 73641950 + 16.79359 NA promoter-TSS (NM_001162997) promoter-TSS (NM_001162997) -830 NM_001162997 100130933 Hs.662541 NM_001162997 ENSG00000259120 SMIM6 C17orf110 small integral membrane protein 6 protein-coding 13-PTNLD9-TUMOR_peak_30415 chr20 10845088 10845271 + 16.78826 NA Intergenic Intergenic 44741 NR_109866 101929413 Hs.385604 NR_109866 ENSG00000232900 LOC101929413 - uncharacterized LOC101929413 ncRNA 13-PTNLD9-TUMOR_peak_4903 chr1 200481451 200481632 + 16.78826 NA Intergenic Intergenic -102355 NM_012482 23528 Hs.59757 NM_012482 HPRD:11702 ZNF281 ZBP-99|ZNP-99 zinc finger protein 281 protein-coding 13-PTNLD9-TUMOR_peak_33075 chr22 30195315 30195474 + 16.78826 NA intron (NM_001242906, intron 14 of 18) intron (NM_001242906, intron 14 of 18) 32036 NM_001003684 29796 Hs.284292 NM_013387 HPRD:13691 UQCR10 HSPC051|HSPC151|QCR9|UCCR7.2|UCRC ubiquinol-cytochrome c reductase, complex III subunit X protein-coding 13-PTNLD9-TUMOR_peak_51699 chr8 119068555 119068710 + 16.78826 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 55426 NM_000127 2131 Hs.492618 NM_000127 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_50198 chr8 19183567 19183871 + 16.78826 NA intron (NM_022071, intron 2 of 9) MIRb|SINE|MIR 12232 NM_001174159 63898 Hs.303208 NM_022071 HPRD:08340 SH2D4A PPP1R38|SH2A SH2 domain containing 4A protein-coding 13-PTNLD9-TUMOR_peak_47777 chr7 67402706 67403196 + 16.78826 NA Intergenic Intergenic -82289 NR_120514 102723427 Hs.583491 NR_120514 LOC102723427 - uncharacterized LOC102723427 ncRNA 13-PTNLD9-TUMOR_peak_51371 chr8 99838228 99838478 + 16.78826 NA promoter-TSS (NM_001256313) promoter-TSS (NM_001256313) -444 NM_006281 6788 Hs.492333 NM_006281 HPRD:05433 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 13-PTNLD9-TUMOR_peak_3997 chr1 157932223 157932427 + 16.78457 NA Intergenic Intergenic -30738 NM_001286349 55243 Hs.272234 NM_018240 HPRD:06306 KIRREL NEPH1 kin of IRRE like (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_3098 chr1 120618530 120618818 + 16.77778 NA Intergenic Intergenic -6357 NM_024408 4853 Hs.487360 NM_024408 HPRD:02606 NOTCH2 AGS2|HJCYS|hN2 notch 2 protein-coding 13-PTNLD9-TUMOR_peak_11959 chr12 6396134 6396278 + 16.76769 NA Intergenic Intergenic -23396 NM_018173 55200 Hs.631660 NM_018173 HPRD:07692 PLEKHG6 MyoGEF pleckstrin homology domain containing, family G (with RhoGef domain) member 6 protein-coding 13-PTNLD9-TUMOR_peak_54375 chr9 111313732 111314308 + 16.76769 NA Intergenic Intergenic 304255 NM_006686 10880 Hs.534390 NM_006686 ACTL7B Tact1 actin-like 7B protein-coding 13-PTNLD9-TUMOR_peak_1374 chr1 41969842 41970191 + 16.76530 NA Intergenic Intergenic -19672 NM_001956 1907 Hs.1407 NM_001956 HPRD:07173 EDN2 ET2|PPET2 endothelin 2 protein-coding 13-PTNLD9-TUMOR_peak_22081 chr17 74684715 74684993 + 16.75466 NA intron (NM_001008529, intron 1 of 4) intron (NM_001008529, intron 1 of 4) 22202 NM_198530 439921 Hs.250723 NM_198530 HPRD:18199 MXRA7 PS1TP1|TMAP1 matrix-remodelling associated 7 protein-coding 13-PTNLD9-TUMOR_peak_2078 chr1 65064025 65064229 + 16.75466 NA intron (NM_020925, intron 3 of 26) intron (NM_020925, intron 3 of 26) 18597 NR_039957 100616338 NR_039957 MIR4794 - microRNA 4794 ncRNA 13-PTNLD9-TUMOR_peak_5363 chr1 212659329 212659696 + 16.75466 NA Intergenic Intergenic 53283 NM_013349 29937 Hs.461787 NM_013349 HPRD:11603 NENF CIR2|SCIRP10|SPUF neudesin neurotrophic factor protein-coding 13-PTNLD9-TUMOR_peak_44822 chr6 36634913 36635182 + 16.75466 NA Intergenic Intergenic 7856 NR_109836 101154753 Hs.741557 NR_109836 PANDAR PANDA promoter of CDKN1A antisense DNA damage activated RNA ncRNA 13-PTNLD9-TUMOR_peak_52154 chr8 134156350 134156770 + 16.75466 NA Intergenic Intergenic -41250 NM_001282964 6503 Hs.75367 NM_006748 HPRD:03060 SLA SLA1|SLAP Src-like-adaptor protein-coding 13-PTNLD9-TUMOR_peak_47538 chr7 55375986 55376215 + 16.75466 NA Intergenic Intergenic -52772 NR_110426 102725541 Hs.590524 NR_110426 ELDR Fabl|LINC01156 EGFR long non-coding downstream RNA ncRNA 13-PTNLD9-TUMOR_peak_16574 chr14 100670727 100671125 + 16.74652 NA Intergenic LTR24|LTR|ERV1 -34176 NM_003403 7528 Hs.388927 NM_003403 YY1 DELTA|INO80S|NF-E1|UCRBP|YIN-YANG-1 YY1 transcription factor protein-coding 13-PTNLD9-TUMOR_peak_9466 chr11 33713568 33714034 + 16.74652 NA Intergenic MER63B|DNA|hAT-Blackjack 8485 NM_001166692 100131378 Hs.709466 NM_001166692 C11orf91 - chromosome 11 open reading frame 91 protein-coding 13-PTNLD9-TUMOR_peak_27453 chr2 85964715 85964881 + 16.74052 NA Intergenic MLT1K|LTR|ERVL-MaLR -16111 NM_032827 84913 Hs.135569 NM_032827 ATOH8 HATH6|bHLHa21 atonal homolog 8 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_36204 chr3 141201230 141201505 + 16.73240 NA Intergenic Intergenic -4559 NM_006506 5922 Hs.98445 NM_006506 ENSG00000155903 RASA2 GAP1M RAS p21 protein activator 2 protein-coding 13-PTNLD9-TUMOR_peak_4844 chr1 193583974 193584185 + 16.72844 NA Intergenic Intergenic 310204 NR_125789 101929184 Hs.146728 NR_125789 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 13-PTNLD9-TUMOR_peak_12852 chr12 53192993 53193237 + 16.72844 NA Intergenic Intergenic -3223 NM_057088 3850 Hs.680652 NM_057088 HPRD:01013 KRT3 CK3|K3 keratin 3 protein-coding 13-PTNLD9-TUMOR_peak_23604 chr19 1155093 1155270 + 16.72844 NA intron (NM_014963, intron 1 of 31) CpG 19101 NM_014963 22904 Hs.408708 NM_014963 HPRD:17203 SBNO2 KIAA0963|SNO|STNO strawberry notch homolog 2 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_28651 chr2 145388341 145388704 + 16.72844 NA Intergenic Intergenic -37012 NR_033870 401014 Hs.742290 NR_033870 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_33044 chr22 28512198 28512723 + 16.72844 NA intron (NM_001145418, intron 6 of 22) intron (NM_001145418, intron 6 of 22) -195860 NR_036169 100423034 NR_036169 miRBase:MI0014247 MIR3199-1 - microRNA 3199-1 ncRNA 13-PTNLD9-TUMOR_peak_43656 chr6 6857477 6857768 + 16.72844 NA Intergenic Intergenic -234563 NR_026970 285780 Hs.655737 NM_173675 HPRD:08165 LY86-AS1 LY86-AS|LY86AS LY86 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_45887 chr6 110736739 110737098 + 16.72500 NA promoter-TSS (NM_003649) promoter-TSS (NM_003649) -165 NM_004032 8528 Hs.591348 NM_003649 HPRD:00498 DDO DASOX|DDO-1|DDO-2 D-aspartate oxidase protein-coding 13-PTNLD9-TUMOR_peak_23468 chr18 72895598 72895746 + 16.72500 NA Intergenic Intergenic 25609 NM_175907 284273 Hs.465433 NM_175907 ZADH2 - zinc binding alcohol dehydrogenase domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_4278 chr1 166783941 166784166 + 16.72500 NA Intergenic MLT1I|LTR|ERVL-MaLR -24671 NM_017542 57645 Hs.432752 NM_017542 POGK BASS2|KRBOX2 pogo transposable element with KRAB domain protein-coding 13-PTNLD9-TUMOR_peak_34619 chr3 50844437 50844632 + 16.72500 NA intron (NM_004947, intron 2 of 52) L1M2c|LINE|L1 131862 NM_004947 1795 Hs.476284 NM_004947 HPRD:10341 DOCK3 MOCA|PBP dedicator of cytokinesis 3 protein-coding 13-PTNLD9-TUMOR_peak_43434 chr6 1708464 1708743 + 16.72500 NA intron (NM_001500, intron 9 of 10) intron (NM_001500, intron 9 of 10) 97922 NM_001453 2296 Hs.348883 NM_001453 HPRD:03054 FOXC1 ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3 forkhead box C1 protein-coding 13-PTNLD9-TUMOR_peak_29668 chr2 208028318 208028523 + 16.71527 NA intron (NM_001270943, intron 1 of 3) intron (NM_001270943, intron 1 of 3) 2320 NM_003709 8609 Hs.59908 NM_003709 HPRD:07279 KLF7 UKLF Kruppel-like factor 7 (ubiquitous) protein-coding 13-PTNLD9-TUMOR_peak_9501 chr11 34324161 34324390 + 16.71280 NA intron (NM_145804, intron 1 of 16) intron (NM_145804, intron 1 of 16) 55280 NM_145804 25841 Hs.23361 NM_145804 HPRD:10624 ABTB2 ABTB2A|BTBD22 ankyrin repeat and BTB (POZ) domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_47892 chr7 73223829 73224137 + 16.71280 NA Intergenic Intergenic -21210 NM_001305 1364 Hs.647036 NM_001305 HPRD:04218 CLDN4 CPE-R|CPER|CPETR|CPETR1|WBSCR8|hCPE-R claudin 4 protein-coding 13-PTNLD9-TUMOR_peak_6586 chr10 17258226 17258501 + 16.71280 NA intron (NR_108061, intron 1 of 2) intron (NR_108061, intron 1 of 2) 10534 NR_108060 100507347 Hs.740502 NR_108060 VIM-AS1 - VIM antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_37706 chr4 4162812 4163259 + 16.70403 NA Intergenic HERVE-int|LTR|ERV1 65586 NM_177998 133060 Hs.534544 NM_177998 HPRD:07421 OTOP1 - otopetrin 1 protein-coding 13-PTNLD9-TUMOR_peak_36695 chr3 170407445 170407655 + 16.70403 NA Intergenic Intergenic -103687 NM_020949 57709 Hs.596660 NM_020949 HPRD:17222 SLC7A14 PPP1R142 solute carrier family 7, member 14 protein-coding 13-PTNLD9-TUMOR_peak_42837 chr5 159329834 159330062 + 16.69672 NA Intergenic Intergenic -13792 NM_000679 147 Hs.368632 NM_000679 ADRA1B ADRA1|ALPHA1BAR adrenoceptor alpha 1B protein-coding 13-PTNLD9-TUMOR_peak_19318 chr16 50731854 50732099 + 16.69435 NA intron (NM_022162, intron 1 of 11) intron (NM_022162, intron 1 of 11) 926 NM_022162 64127 Hs.592072 NM_022162 HPRD:05810 NOD2 ACUG|BLAU|CARD15|CD|CLR16.3|IBD1|NLRC2|NOD2B|PSORAS1 nucleotide-binding oligomerization domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_42885 chr5 162861503 162861829 + 16.69086 NA Intergenic Intergenic -2911 NM_199246 900 Hs.79101 NM_004060 HPRD:03345 CCNG1 CCNG cyclin G1 protein-coding 13-PTNLD9-TUMOR_peak_51661 chr8 117529855 117530145 + 16.68978 NA Intergenic Intergenic -192703 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 13-PTNLD9-TUMOR_peak_52089 chr8 131540701 131540897 + 16.68978 NA Intergenic Intergenic -84893 NM_018482 50807 Hs.655552 NM_018482 HPRD:05809 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 13-PTNLD9-TUMOR_peak_29081 chr2 172950036 172950218 + 16.68978 NA promoter-TSS (NM_001038493) promoter-TSS (NM_001038493) -81 NM_178120 1745 Hs.407015 NM_178120 HPRD:08961 DLX1 - distal-less homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_54247 chr9 103338117 103338342 + 16.68978 NA intron (NM_003692, intron 9 of 9) intron (NM_003692, intron 9 of 9) -2132 NM_001018116 347273 Hs.99004 NM_001018116 HPRD:18599 MURC CAVIN4|cavin-4 muscle-related coiled-coil protein protein-coding 13-PTNLD9-TUMOR_peak_32186 chr21 35055652 35055917 + 16.68978 NA intron (NM_003024, intron 1 of 39) intron (NM_003024, intron 1 of 39) 41000 NM_003024 6453 Hs.160324 NM_003024 HPRD:03898 ITSN1 ITSN|SH3D1A|SH3P17 intersectin 1 (SH3 domain protein) protein-coding 13-PTNLD9-TUMOR_peak_11583 chr11 127896635 127896818 + 16.68978 NA Intergenic MER44C|DNA|TcMar-Tigger 495479 NM_005238 2113 Hs.369438 NM_005238 HPRD:01260 ETS1 ETS-1|EWSR2|p54 v-ets avian erythroblastosis virus E26 oncogene homolog 1 protein-coding 13-PTNLD9-TUMOR_peak_12827 chr12 52674142 52674499 + 16.67116 NA Intergenic Intergenic 10979 NM_002281 3887 Hs.658118 NM_002281 HPRD:03691 KRT81 HB1|Hb-1|KRTHB1|MLN137|ghHkb1|hHAKB2-1 keratin 81 protein-coding 13-PTNLD9-TUMOR_peak_9580 chr11 37929003 37929325 + 16.66870 NA Intergenic HERVL18-int|LTR|ERVL 738742 NR_120555 103312105 Hs.641711 NR_120554 LOC103312105 - uncharacterized LOC103312105 ncRNA 13-PTNLD9-TUMOR_peak_26709 chr2 43269038 43269196 + 16.66870 NA Intergenic Intergenic -2435 NR_110585 102723854 Hs.570165 NR_110585 LOC102723854 - uncharacterized LOC102723854 ncRNA 13-PTNLD9-TUMOR_peak_32330 chr21 40203489 40203892 + 16.66870 NA Intergenic Intergenic -25773 NR_109926 101928398 Hs.122403 NR_109926 LOC101928398 - uncharacterized LOC101928398 ncRNA 13-PTNLD9-TUMOR_peak_4656 chr1 182076403 182076584 + 16.66870 NA Intergenic L2c|LINE|L2 -45646 NM_001009992 127665 Hs.684328 NM_001009992 HPRD:18361 ZNF648 - zinc finger protein 648 protein-coding 13-PTNLD9-TUMOR_peak_16430 chr14 90920746 90920955 + 16.66870 NA promoter-TSS (NR_033986) promoter-TSS (NR_033986) -724 NR_033986 400238 Hs.131037 NR_033986 ENSG00000233208 LINC00642 - long intergenic non-protein coding RNA 642 ncRNA 13-PTNLD9-TUMOR_peak_23380 chr18 60829092 60829298 + 16.65793 NA intron (NM_000633, intron 2 of 2) intron (NM_000633, intron 2 of 2) 157418 NM_000633 596 Hs.150749 NM_000633 HPRD:01045 BCL2 Bcl-2|PPP1R50 B-cell CLL/lymphoma 2 protein-coding 13-PTNLD9-TUMOR_peak_40056 chr4 187686341 187686578 + 16.65793 NA Intergenic Intergenic -41472 NM_005245 2195 Hs.481371 NM_005245 HPRD:02986 FAT1 CDHF7|CDHR8|FAT|ME5|hFat1 FAT atypical cadherin 1 protein-coding 13-PTNLD9-TUMOR_peak_38873 chr4 89744843 89745000 + 16.65793 NA promoter-TSS (NM_001265580) promoter-TSS (NM_001265580) -409 NM_001265578 10144 Hs.97270 NM_014883 HPRD:10944 FAM13A ARHGAP48|FAM13A1 family with sequence similarity 13, member A protein-coding 13-PTNLD9-TUMOR_peak_10535 chr11 71781079 71781223 + 16.65793 NA intron (NM_001286561, intron 1 of 26) intron (NM_001286561, intron 1 of 26) 2197 NR_036123 100422953 NR_036123 miRBase:MI0014195 MIR3165 - microRNA 3165 ncRNA 13-PTNLD9-TUMOR_peak_1535 chr1 44949964 44950134 + 16.65793 NA intron (NM_018150, intron 2 of 14) MLT1J2|LTR|ERVL-MaLR -61116 NR_049849 100847089 NR_049849 MIR5584 - microRNA 5584 ncRNA 13-PTNLD9-TUMOR_peak_40385 chr5 14475133 14475460 + 16.65793 NA intron (NM_007118, intron 40 of 56) intron (NM_007118, intron 40 of 56) -106595 NM_019018 54491 Hs.155085 NM_019018 FAM105A NET20 family with sequence similarity 105, member A protein-coding 13-PTNLD9-TUMOR_peak_42971 chr5 170288913 170289079 + 16.65357 NA promoter-TSS (NM_022897) promoter-TSS (NM_022897) 100 NM_022897 64901 Hs.410810 NM_022897 HPRD:05847 RANBP17 - RAN binding protein 17 protein-coding 13-PTNLD9-TUMOR_peak_40254 chr5 8775567 8775974 + 16.65357 NA Intergenic AluSz|SINE|Alu -64074 NR_109932 101929284 Hs.403715 NR_109932 ENSG00000250198 LOC101929284 - uncharacterized LOC101929284 ncRNA 13-PTNLD9-TUMOR_peak_15773 chr14 53167444 53167581 + 16.65357 NA Intergenic Intergenic -5093 NM_014584 30001 Hs.592304 NM_014584 ERO1L ERO1-alpha|ERO1A|ERO1LA ERO1-like (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_10946 chr11 94480876 94481248 + 16.65327 NA Intergenic MLT1J2|LTR|ERVL-MaLR -20446 NM_001301007 154810 Hs.503594 NM_130847 HPRD:12451 AMOTL1 JEAP angiomotin like 1 protein-coding 13-PTNLD9-TUMOR_peak_21029 chr17 39071524 39071766 + 16.65327 NA Intergenic Intergenic 22250 NM_001282433 25984 Hs.9029 NM_015515 HPRD:05863 KRT23 CK23|HAIK1|K23 keratin 23 (histone deacetylase inducible) protein-coding 13-PTNLD9-TUMOR_peak_18564 chr16 14151962 14152278 + 16.65327 NA Intergenic Intergenic -13076 NM_014048 57496 Hs.49143 NM_014048 HPRD:17577 MKL2 MRTF-B|MRTFB|NPD001 MKL/myocardin-like 2 protein-coding 13-PTNLD9-TUMOR_peak_37415 chr3 195834944 195835498 + 16.65327 NA Intergenic Intergenic -26189 NM_001128148 7037 Hs.529618 NM_003234 HPRD:01812 TFRC CD71|T9|TFR|TFR1|TR|TRFR|p90 transferrin receptor protein-coding 13-PTNLD9-TUMOR_peak_53630 chr9 75093203 75093374 + 16.65327 NA Intergenic Intergenic -43429 NM_138691 117531 Hs.670211 NM_138691 HPRD:05988 TMC1 DFNA36|DFNB11|DFNB7 transmembrane channel-like 1 protein-coding 13-PTNLD9-TUMOR_peak_44016 chr6 18431837 18432137 + 16.65321 NA intron (NM_182757, intron 3 of 7) intron (NM_182757, intron 3 of 7) 44406 NM_182757 255488 Hs.148741 NM_182757 HPRD:17126 RNF144B IBRDC2|PIR2|bA528A10.3|p53RFP ring finger protein 144B protein-coding 13-PTNLD9-TUMOR_peak_4502 chr1 176758910 176759104 + 16.62437 NA exon (NM_020318, exon 18 of 23) exon (NM_020318, exon 18 of 23) 239574 NR_030163 574441 NR_030163 MIR488 MIRN488|hsa-mir-488 microRNA 488 ncRNA 13-PTNLD9-TUMOR_peak_28710 chr2 151267389 151267651 + 16.62437 NA Intergenic Intergenic 76689 NM_005168 390 Hs.6838 NM_005168 HPRD:04233 RND3 ARHE|Rho8|RhoE|memB Rho family GTPase 3 protein-coding 13-PTNLD9-TUMOR_peak_45932 chr6 113953470 113953862 + 16.62437 NA Intergenic Intergenic -224861 NM_002356 4082 Hs.519909 NM_002356 HPRD:07519 MARCKS 80K-L|MACS|PKCSL|PRKCSL myristoylated alanine-rich protein kinase C substrate protein-coding 13-PTNLD9-TUMOR_peak_11453 chr11 122450848 122451006 + 16.62437 NA Intergenic LTR10F|LTR|ERV1 -75471 NM_032873 84959 Hs.444075 NM_032873 HPRD:16463 UBASH3B STS-1|STS1|TULA-2|p70 ubiquitin associated and SH3 domain containing B protein-coding 13-PTNLD9-TUMOR_peak_30307 chr20 3047261 3047542 + 16.62437 NA Intergenic L2a|LINE|L2 -4865 NM_000915 5020 Hs.113216 NM_000915 HPRD:08880 OXT OT|OT-NPI|OXT-NPI oxytocin/neurophysin I prepropeptide protein-coding 13-PTNLD9-TUMOR_peak_8602 chr10 129845689 129845905 + 16.62437 NA promoter-TSS (NM_130435) promoter-TSS (NM_130435) -16 NM_130435 5791 Hs.127022 NM_006504 HPRD:02956 PTPRE HPTPE|PTPE|R-PTP-EPSILON protein tyrosine phosphatase, receptor type, E protein-coding 13-PTNLD9-TUMOR_peak_53641 chr9 75747280 75747469 + 16.62437 NA Intergenic Intergenic -19407 NM_000700 301 Hs.494173 NM_000700 HPRD:01060 ANXA1 ANX1|LPC1 annexin A1 protein-coding 13-PTNLD9-TUMOR_peak_41280 chr5 73674351 73674524 + 16.62437 NA Intergenic Intergenic 56126 NR_105010 101929082 Hs.434316 NR_105010 ENSG00000249343 LINC01333 - long intergenic non-protein coding RNA 1333 ncRNA 13-PTNLD9-TUMOR_peak_4162 chr1 161628395 161628599 + 16.61338 NA Intergenic Intergenic -4408 NM_001190828 2213 Hs.654395 NM_004001 HPRD:06849 FCGR2B CD32|CD32B|FCG2|FCGR2|IGFR2 Fc fragment of IgG, low affinity IIb, receptor (CD32) protein-coding 13-PTNLD9-TUMOR_peak_5206 chr1 205411131 205411500 + 16.61264 NA intron (NR_103783, intron 1 of 1) intron (NR_103783, intron 1 of 1) 6211 NR_029893 442891 NR_029893 miRBase:MI0000810 MIR135B MIRN135B microRNA 135b ncRNA 13-PTNLD9-TUMOR_peak_10343 chr11 67080211 67080454 + 16.61222 NA TTS (NM_017857) TTS (NM_017857) -4978 NR_024469 100130987 Hs.664585 NR_024469 LOC100130987 - uncharacterized LOC100130987 ncRNA 13-PTNLD9-TUMOR_peak_48676 chr7 102802561 102802892 + 16.61222 NA Intergenic Intergenic -13157 NM_001122838 222236 Hs.324271 NM_198990 HPRD:14809 NAPEPLD FMP30|NAPE-PLD N-acyl phosphatidylethanolamine phospholipase D protein-coding 13-PTNLD9-TUMOR_peak_13975 chr12 118013914 118014122 + 16.60973 NA intron (NM_173598, intron 7 of 19) intron (NM_173598, intron 7 of 19) -214411 NM_001204218 4842 Hs.654410 NM_000620 HPRD:01226 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 (neuronal) protein-coding 13-PTNLD9-TUMOR_peak_41520 chr5 92414231 92414614 + 16.60973 NA Intergenic Intergenic 492627 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_43947 chr6 16544222 16544589 + 16.60973 NA intron (NM_001128164, intron 4 of 7) intron (NM_001128164, intron 4 of 7) 217316 NM_001128164 6310 Hs.434961 NM_000332 HPRD:03333 ATXN1 ATX1|D6S504E|SCA1 ataxin 1 protein-coding 13-PTNLD9-TUMOR_peak_35135 chr3 96532073 96532225 + 16.60973 NA Intergenic CpG -1276 NM_001080448 285220 Hs.653244 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 13-PTNLD9-TUMOR_peak_9864 chr11 56922911 56923295 + 16.60973 NA Intergenic MIRb|SINE|MIR -26118 NM_001005210 219527 Hs.199853 NM_001005210 HPRD:16990 LRRC55 - leucine rich repeat containing 55 protein-coding 13-PTNLD9-TUMOR_peak_16825 chr15 26055777 26056109 + 16.60973 NA intron (NM_024490, intron 1 of 20) intron (NM_024490, intron 1 of 20) 38029 NR_039865 100616474 NR_039865 MIR4715 - microRNA 4715 ncRNA 13-PTNLD9-TUMOR_peak_33678 chr3 9291261 9291441 + 16.60660 NA promoter-TSS (NM_014850) promoter-TSS (NM_014850) 18 NM_014850 9901 Hs.654743 NM_014850 HPRD:12108 SRGAP3 ARHGAP14|MEGAP|SRGAP2|WRP SLIT-ROBO Rho GTPase activating protein 3 protein-coding 13-PTNLD9-TUMOR_peak_41861 chr5 121516888 121517098 + 16.60660 NA intron (NM_001195535, intron 2 of 2) intron (NM_001195535, intron 2 of 2) 21122 NM_001195535 100505841 Hs.733368 NM_001195535 LOC100505841 - zinc finger protein 474-like protein-coding 13-PTNLD9-TUMOR_peak_7254 chr10 47659449 47659647 + 16.60660 NA intron (NM_001278688, intron 1 of 16) MIRc|SINE|MIR 1315 NM_001278688 195977 Hs.538515 NM_001278688 ENSG00000198250 ANTXRL - anthrax toxin receptor-like protein-coding 13-PTNLD9-TUMOR_peak_12624 chr12 45629578 45629803 + 16.60660 NA intron (NM_001142679, intron 1 of 19) intron (NM_001142679, intron 1 of 19) -19901 NR_037144 51054 Hs.233495 NM_015899 HPRD:15143 PLEKHA8P1 PLEKHA9 pleckstrin homology domain containing, family A member 8 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_39030 chr4 108611443 108611605 + 16.60660 NA intron (NM_005443, intron 3 of 11) L2c|LINE|L2 29895 NM_005443 9061 Hs.368610 NM_005443 HPRD:09132 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 13-PTNLD9-TUMOR_peak_20668 chr17 21117421 21117691 + 16.60660 NA non-coding (NR_024547, exon 1 of 3) non-coding (NR_024547, exon 1 of 3) 352 NR_024547 8834 Hs.592945 NM_003876 TMEM11 C17orf35|PM1|PMI transmembrane protein 11 protein-coding 13-PTNLD9-TUMOR_peak_47432 chr7 47521698 47521993 + 16.60472 NA intron (NM_022748, intron 3 of 30) intron (NM_022748, intron 3 of 30) 99897 NM_022748 64759 Hs.520814 NM_022748 ENSG00000136205 TNS3 TEM6|TENS1 tensin 3 protein-coding 13-PTNLD9-TUMOR_peak_2017 chr1 62418016 62418203 + 16.60472 NA intron (NM_176877, intron 27 of 42) intron (NM_176877, intron 27 of 42) 209960 NM_176877 10207 Hs.478125 NM_005799 HPRD:04434 INADL Cipp|InaD-like|PATJ|hINADL InaD-like (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_42941 chr5 169010657 169010800 + 16.60472 NA promoter-TSS (NM_017785) promoter-TSS (NM_017785) 90 NM_017785 54908 Hs.368710 NM_017785 HPRD:08623 SPDL1 CCDC99 spindle apparatus coiled-coil protein 1 protein-coding 13-PTNLD9-TUMOR_peak_29434 chr2 196487658 196488017 + 16.60472 NA Intergenic Intergenic -33695 NM_001127257 57181 Hs.650158 NM_020342 HPRD:10572 SLC39A10 LZT-Hs2 solute carrier family 39 (zinc transporter), member 10 protein-coding 13-PTNLD9-TUMOR_peak_30790 chr20 31766540 31766810 + 16.60472 NA intron (NM_080574, intron 6 of 8) MER5A1|DNA|hAT-Charlie 10715 NM_080574 140683 Hs.125960 NM_080574 HPRD:12781 BPIFA2 C20orf70|PSP|SPLUNC2|bA49G10.1 BPI fold containing family A, member 2 protein-coding 13-PTNLD9-TUMOR_peak_11718 chr11 133804626 133804853 + 16.60472 NA intron (NM_001277285, intron 7 of 19) intron (NM_001277285, intron 7 of 19) 21910 NM_001277285 22997 Hs.204121 NM_014987 ENSG00000080854 IGSF9B - immunoglobulin superfamily, member 9B protein-coding 13-PTNLD9-TUMOR_peak_33703 chr3 9908384 9908580 + 16.60472 NA TTS (NM_001199551) TTS (NM_001199551) 12014 NM_001199623 63924 Hs.567562 NM_022094 HPRD:13060 CIDEC CIDE-3|CIDE3|FPLD5|FSP27 cell death-inducing DFFA-like effector c protein-coding 13-PTNLD9-TUMOR_peak_25940 chr2 1557817 1558033 + 16.60472 NA Intergenic LTR24|LTR|ERV1 139745 NM_175721 7173 Hs.467554 NM_000547 HPRD:06000 TPO MSA|TDH2A|TPX thyroid peroxidase protein-coding 13-PTNLD9-TUMOR_peak_42747 chr5 154214756 154215325 + 16.60472 NA intron (NM_032385, intron 2 of 8) intron (NM_032385, intron 2 of 8) 15173 NM_032385 10826 Hs.519694 NM_016348 HPRD:12832 FAXDC2 C5orf4 fatty acid hydroxylase domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_53027 chr9 33255513 33255855 + 16.60472 NA intron (NM_004323, intron 6 of 6) intron (NM_004323, intron 6 of 6) 9075 NM_001172415 573 Hs.377484 NM_004323 HPRD:03292 BAG1 BAG-1|HAP|RAP46 BCL2-associated athanogene protein-coding 13-PTNLD9-TUMOR_peak_22112 chr17 75318968 75319390 + 16.60472 NA intron (NM_006640, intron 1 of 10) intron (NM_006640, intron 1 of 10) 3582 NM_006640 10801 Hs.440932 NM_006640 HPRD:10360 SEPT9 AF17q25|MSF|MSF1|NAPB|PNUTL4|SINT1|SeptD1 septin 9 protein-coding 13-PTNLD9-TUMOR_peak_13322 chr12 71440065 71440389 + 16.60472 NA Intergenic Intergenic 111552 NM_004616 7103 Hs.170563 NM_004616 HPRD:02865 TSPAN8 CO-029|TM4SF3 tetraspanin 8 protein-coding 13-PTNLD9-TUMOR_peak_48687 chr7 103375919 103376171 + 16.58195 NA intron (NM_005045, intron 6 of 64) intron (NM_005045, intron 6 of 64) 253918 NM_005045 5649 Hs.655654 NM_005045 HPRD:02742 RELN LIS2|PRO1598|RL reelin protein-coding 13-PTNLD9-TUMOR_peak_3083 chr1 120325669 120325880 + 16.58195 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -14219 NM_001166107 3158 Hs.59889 NM_005518 HPRD:02580 HMGCS2 - 3-hydroxy-3-methylglutaryl-CoA synthase 2 (mitochondrial) protein-coding 13-PTNLD9-TUMOR_peak_54560 chr9 117908902 117909223 + 16.58195 NA intron (NM_017418, intron 1 of 7) intron (NM_017418, intron 1 of 7) 4965 NM_017418 50514 Hs.148841 NM_017418 HPRD:16068 DEC1 CTS9 deleted in esophageal cancer 1 protein-coding 13-PTNLD9-TUMOR_peak_34438 chr3 46599942 46600111 + 16.58195 NA intron (NR_073385, intron 2 of 2) L1MEf|LINE|L1 1138 NR_073385 83598 Hs.570630 NR_073385 LRRC2-AS1 LUZP3|LUZP3P|LUZPP1 LRRC2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_16512 chr14 96612513 96612756 + 16.58195 NA Intergenic Intergenic -58501 NM_000623 624 Hs.654542 NM_000623 HPRD:00213 BDKRB2 B2R|BK-2|BK2|BKR2|BRB2 bradykinin receptor B2 protein-coding 13-PTNLD9-TUMOR_peak_17283 chr15 51413408 51413619 + 16.58195 NA Intergenic Intergenic -16040 NM_207381 388121 Hs.306343 NM_207381 HPRD:13452 TNFAIP8L3 - tumor necrosis factor, alpha-induced protein 8-like 3 protein-coding 13-PTNLD9-TUMOR_peak_5163 chr1 204616769 204616944 + 16.58195 NA intron (NM_201630, intron 1 of 1) intron (NM_201630, intron 1 of 1) 37625 NM_006338 10446 Hs.26312 NM_006338 HPRD:16109 LRRN2 FIGLER7|GAC1|LRANK1|LRRN5 leucine rich repeat neuronal 2 protein-coding 13-PTNLD9-TUMOR_peak_26898 chr2 48921458 48921641 + 16.58195 NA intron (NM_000233, intron 9 of 10) intron (NM_000233, intron 9 of 10) 61331 NM_000233 3973 Hs.468490 NM_000233 HPRD:01073 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 13-PTNLD9-TUMOR_peak_18609 chr16 15576039 15576492 + 16.58195 NA intron (NM_033201, intron 1 of 5) intron (NM_033201, intron 1 of 5) -19858 NM_001142469 89927 Hs.401798 NM_033201 HPRD:12382 C16orf45 - chromosome 16 open reading frame 45 protein-coding 13-PTNLD9-TUMOR_peak_36465 chr3 155134601 155134878 + 16.58195 NA Intergenic Tigger3a|DNA|TcMar-Tigger -123250 NR_037902 100507537 Hs.518341 NR_037902 ENSG00000240045 LOC100507537 - uncharacterized LOC100507537 ncRNA 13-PTNLD9-TUMOR_peak_32565 chr21 46560379 46560544 + 16.58195 NA intron (NR_027673, intron 3 of 12) intron (NR_027673, intron 3 of 12) 65968 NM_015834 104 Hs.474018 NM_001112 HPRD:06777 ADARB1 ADAR2|DRABA2|DRADA2|RED1 adenosine deaminase, RNA-specific, B1 protein-coding 13-PTNLD9-TUMOR_peak_13500 chr12 95199607 95199831 + 16.58195 NA Intergenic Intergenic -28455 NR_030171 574449 NR_030171 miRBase:MI0003131 MIR492 MIRN492|hsa-mir-492 microRNA 492 ncRNA 13-PTNLD9-TUMOR_peak_33204 chr22 36861267 36861872 + 16.57711 NA Intergenic Intergenic 16118 NM_012473 25828 Hs.211929 NM_012473 HPRD:07161 TXN2 MT-TRX|MTRX|TRX2 thioredoxin 2 protein-coding 13-PTNLD9-TUMOR_peak_16778 chr15 22511893 22512477 + 16.57711 NA Intergenic Intergenic -34380 NR_033735 646396 Hs.451294 NR_033735 REREP3 - arginine-glutamic acid dipeptide (RE) repeats pseudogene 3 pseudo 13-PTNLD9-TUMOR_peak_28006 chr2 110812251 110812461 + 16.57591 NA Intergenic Intergenic 15263 NR_036225 100422994 NR_036225 miRBase:MI0015871 MIR4267 - microRNA 4267 ncRNA 13-PTNLD9-TUMOR_peak_42179 chr5 135394059 135394479 + 16.56642 NA intron (NM_000358, intron 12 of 16) intron (NM_000358, intron 12 of 16) 22017 NR_030583 100126299 NR_030583 ENSG00000270123 VTRNA2-1 CBL-3|CBL3|MIR886|MIRN886|VTRNA2|hsa-mir-886|hvg-5|nc886 vault RNA 2-1 ncRNA 13-PTNLD9-TUMOR_peak_30550 chr20 19546935 19547179 + 16.56026 NA intron (NM_020689, intron 3 of 16) intron (NM_020689, intron 3 of 16) -281817 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 13-PTNLD9-TUMOR_peak_230 chr1 7325856 7326086 + 16.56026 NA intron (NM_015215, intron 5 of 22) intron (NM_015215, intron 5 of 22) 480587 NR_038934 23261 Hs.397705 NM_015215 HPRD:16681 CAMTA1 CANPMR calmodulin binding transcription activator 1 protein-coding 13-PTNLD9-TUMOR_peak_43537 chr6 3518626 3518815 + 16.56026 NA Intergenic Intergenic -61927 NM_015482 63027 Hs.713588 NM_015482 HPRD:12904 SLC22A23 C6orf85 solute carrier family 22, member 23 protein-coding 13-PTNLD9-TUMOR_peak_28382 chr2 128395316 128395713 + 16.56026 NA TTS (NM_001256542) TTS (NM_001256542) -7925 NM_001161417 2840 Hs.46453 NM_005291 HPRD:04351 GPR17 - G protein-coupled receptor 17 protein-coding 13-PTNLD9-TUMOR_peak_2102 chr1 66737011 66737269 + 16.56026 NA intron (NM_001297440, intron 6 of 15) intron (NM_001297440, intron 6 of 15) -60651 NM_001037339 5142 Hs.198072 NM_002600 HPRD:02528 PDE4B DPDE4|PDEIVB phosphodiesterase 4B, cAMP-specific protein-coding 13-PTNLD9-TUMOR_peak_33643 chr3 8531790 8532281 + 16.56026 NA intron (NR_033378, intron 3 of 3) intron (NR_033378, intron 3 of 3) 11309 NR_033378 100288428 Hs.651576 NR_033378 ENSG00000227110 LMCD1-AS1 - LMCD1 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_42966 chr5 170041863 170042022 + 16.56026 NA intron (NM_014592, intron 1 of 7) AluSx1|SINE|Alu 110902 NM_001278340 30820 Hs.484111 NM_014592 HPRD:06879 KCNIP1 KCHIP1|VABP Kv channel interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_42420 chr5 141742427 141742600 + 16.56026 NA intron (NR_120664, intron 3 of 3) intron (NR_120664, intron 3 of 3) 37655 NR_120664 101926941 Hs.658945 NR_120664 ENSG00000231185 LOC101926941 - uncharacterized LOC101926941 ncRNA 13-PTNLD9-TUMOR_peak_5461 chr1 221885597 221885856 + 16.55437 NA intron (NR_111940, intron 1 of 2) intron (NR_111940, intron 1 of 2) 24516 NR_111939 11221 Hs.497822 NM_007207 HPRD:12320 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 13-PTNLD9-TUMOR_peak_2128 chr1 68027469 68027696 + 16.55437 NA Intergenic Intergenic -123278 NM_001199741 1647 Hs.80409 NM_001924 HPRD:00528 GADD45A DDIT1|GADD45 growth arrest and DNA-damage-inducible, alpha protein-coding 13-PTNLD9-TUMOR_peak_38287 chr4 48946195 48946562 + 16.55115 NA Intergenic Intergenic -37533 NM_001286774 132299 Hs.95835 NM_152398 HPRD:14873 OCIAD2 - OCIA domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_40539 chr5 32283950 32284170 + 16.55115 NA intron (NM_001294343, intron 1 of 14) intron (NM_001294343, intron 1 of 14) 29054 NM_001040446 54545 Hs.481836 NM_019061 HPRD:05933 MTMR12 3-PAP|PIP3AP myotubularin related protein 12 protein-coding 13-PTNLD9-TUMOR_peak_52609 chr9 811192 811593 + 16.55115 NA Intergenic Intergenic -30298 NM_021951 1761 Hs.98586 NM_021951 HPRD:03885 DMRT1 CT154|DMT1 doublesex and mab-3 related transcription factor 1 protein-coding 13-PTNLD9-TUMOR_peak_32806 chr22 20921709 20922002 + 16.54208 NA intron (NM_001293236, intron 6 of 15) intron (NM_001293236, intron 6 of 15) 59520 NM_001293237 51586 Hs.517421 NM_015889 HPRD:12117 MED15 ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7 mediator complex subunit 15 protein-coding 13-PTNLD9-TUMOR_peak_3939 chr1 156457725 156457979 + 16.53862 NA intron (NM_005920, intron 1 of 11) intron (NM_005920, intron 1 of 11) 2539 NM_001271629 4209 Hs.314327 NM_005920 HPRD:02810 MEF2D - myocyte enhancer factor 2D protein-coding 13-PTNLD9-TUMOR_peak_51829 chr8 124425273 124425500 + 16.53228 NA Intergenic MER67B|LTR|ERV1 -3579 NM_018024 55093 Hs.18029 NM_018024 HPRD:07653 WDYHV1 C8orf32 WDYHV motif containing 1 protein-coding 13-PTNLD9-TUMOR_peak_4583 chr1 179558833 179558979 + 16.53228 NA Intergenic Intergenic -1842 NM_001199091 163589 Hs.197354 NM_173533 HPRD:15483 TDRD5 TUDOR3 tudor domain containing 5 protein-coding 13-PTNLD9-TUMOR_peak_22562 chr18 9828221 9828520 + 16.53228 NA intron (NM_006868, intron 5 of 6) MER117|DNA|hAT-Charlie -57353 NM_032243 84203 Hs.98712 NM_032243 HPRD:11654 TXNDC2 SPTRX|SPTRX1 thioredoxin domain containing 2 (spermatozoa) protein-coding 13-PTNLD9-TUMOR_peak_42988 chr5 171022879 171023122 + 16.51393 NA Intergenic MIRb|SINE|MIR 176333 NM_003862 8817 Hs.87191 NM_003862 HPRD:04766 FGF18 FGF-18|ZFGF5 fibroblast growth factor 18 protein-coding 13-PTNLD9-TUMOR_peak_35506 chr3 119863263 119863473 + 16.51393 NA Intergenic Intergenic -50104 NM_002093 2932 Hs.445733 NM_002093 HPRD:05418 GSK3B - glycogen synthase kinase 3 beta protein-coding 13-PTNLD9-TUMOR_peak_40528 chr5 31988506 31988674 + 16.51140 NA intron (NM_178140, intron 2 of 23) MER21C|LTR|ERVL -52325 NR_036241 100422874 NR_036241 miRBase:MI0015887 MIR4279 - microRNA 4279 ncRNA 13-PTNLD9-TUMOR_peak_11247 chr11 113073183 113073342 + 16.51140 NA intron (NM_181351, intron 3 of 19) intron (NM_181351, intron 3 of 19) 71361 NR_034101 100288346 Hs.661826 NR_034101 ENSG00000227487 NCAM1-AS1 - NCAM1 antisense RNA1 ncRNA 13-PTNLD9-TUMOR_peak_24694 chr19 33841417 33841778 + 16.51140 NA Intergenic Intergenic -22978 NM_001806 1054 Hs.429666 NM_001806 HPRD:00738 CEBPG GPE1BP|IG/EBP-1 CCAAT/enhancer binding protein (C/EBP), gamma protein-coding 13-PTNLD9-TUMOR_peak_47558 chr7 56077366 56077711 + 16.51140 NA Intergenic Intergenic 41730 NM_004577 5723 Hs.512656 NM_004577 HPRD:01406 PSPH PSP|PSPHD phosphoserine phosphatase protein-coding 13-PTNLD9-TUMOR_peak_5914 chr1 234743903 234744108 + 16.51068 NA intron (NM_001077397, intron 1 of 1) intron (NM_001077397, intron 1 of 1) 1266 NM_182972 359948 Hs.350268 NM_182972 HPRD:17160 IRF2BP2 - interferon regulatory factor 2 binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_3662 chr1 152006949 152007452 + 16.50599 NA intron (NM_005620, intron 1 of 2) intron (NM_005620, intron 1 of 2) 2311 NM_005620 6282 Hs.417004 NM_005620 HPRD:04385 S100A11 HEL-S-43|MLN70|S100C S100 calcium binding protein A11 protein-coding 13-PTNLD9-TUMOR_peak_42285 chr5 139088632 139089041 + 16.50575 NA Intergenic CpG 36972 NR_105052 101929696 Hs.147408 NR_105052 ENSG00000249131 LOC101929696 - uncharacterized LOC101929696 ncRNA 13-PTNLD9-TUMOR_peak_32083 chr21 30541229 30541520 + 16.50470 NA intron (NM_001286622, intron 8 of 8) MER20|DNA|hAT-Charlie 23494 NM_001286624 56911 Hs.222802 NM_020152 HPRD:10764 MAP3K7CL C21orf7|HC21ORF7|TAK1L|TAKL|TAKL-1|TAKL-2|TAKL-4 MAP3K7 C-terminal like protein-coding 13-PTNLD9-TUMOR_peak_45349 chr6 53719787 53720006 + 16.50470 NA intron (NM_018214, intron 2 of 13) intron (NM_018214, intron 2 of 13) 60118 NM_018214 55227 Hs.606493 NM_018214 ENSG00000137269 LRRC1 LANO|dJ523E19.1 leucine rich repeat containing 1 protein-coding 13-PTNLD9-TUMOR_peak_12756 chr12 50926390 50926611 + 16.49714 NA intron (NM_173602, intron 1 of 37) intron (NM_173602, intron 1 of 37) 27732 NM_173602 57609 Hs.505516 NM_020849 HPRD:08751 DIP2B - DIP2 disco-interacting protein 2 homolog B (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_54968 chr9 136002677 136003083 + 16.49714 NA intron (NM_001042368, intron 1 of 17) intron (NM_001042368, intron 1 of 17) 1908 NM_001271775 5900 Hs.106185 NM_006266 HPRD:03371 RALGDS RGDS|RGF|RalGEF ral guanine nucleotide dissociation stimulator protein-coding 13-PTNLD9-TUMOR_peak_4634 chr1 181116753 181116996 + 16.49714 NA Intergenic L2b|LINE|L2 59236 NM_016545 51278 Hs.15725 NM_016545 HPRD:06210 IER5 SBBI48 immediate early response 5 protein-coding 13-PTNLD9-TUMOR_peak_26257 chr2 20189820 20190001 + 16.49714 NA promoter-TSS (NM_020779) promoter-TSS (NM_020779) -26 NM_020779 57539 Hs.205427 NM_020779 HPRD:15667 WDR35 CED2|IFT121|IFTA1|SRTD7 WD repeat domain 35 protein-coding 13-PTNLD9-TUMOR_peak_56660 chrX 152518575 152519008 + 16.49714 NA Intergenic Intergenic -32675 NM_004988 4100 Hs.72879 NM_004988 HPRD:02059 MAGEA1 CT1.1|MAGE1 melanoma antigen family A, 1 (directs expression of antigen MZ2-E) protein-coding 13-PTNLD9-TUMOR_peak_53926 chr9 91613827 91614011 + 16.49714 NA intron (NM_005226, intron 1 of 1) intron (NM_005226, intron 1 of 1) 7595 NM_005226 1903 Hs.585118 NM_005226 HPRD:03572 S1PR3 EDG-3|EDG3|LPB3|S1P3 sphingosine-1-phosphate receptor 3 protein-coding 13-PTNLD9-TUMOR_peak_22555 chr18 9731451 9731731 + 16.49714 NA intron (NM_006868, intron 1 of 6) intron (NM_006868, intron 1 of 6) 23363 NM_006868 11031 Hs.99528 NM_006868 HPRD:05751 RAB31 Rab22B RAB31, member RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_27857 chr2 102027164 102027630 + 16.49384 NA intron (NM_001145664, intron 8 of 11) intron (NM_001145664, intron 8 of 11) -23432 NM_153836 200407 Hs.732289 NM_153836 CREG2 - cellular repressor of E1A-stimulated genes 2 protein-coding 13-PTNLD9-TUMOR_peak_51382 chr8 100872463 100872701 + 16.49384 NA intron (NM_152564, intron 57 of 61) intron (NM_152564, intron 57 of 61) 33660 NM_004374 1345 Hs.351875 NM_004374 HPRD:00494 COX6C - cytochrome c oxidase subunit VIc protein-coding 13-PTNLD9-TUMOR_peak_45480 chr6 72188600 72188838 + 16.49384 NA Intergenic UCON25|Unknown|Unknown 57989 NR_121615 102724000 Hs.145785 NR_121615 LOC102724000 - uncharacterized LOC102724000 ncRNA 13-PTNLD9-TUMOR_peak_42900 chr5 167372691 167373235 + 16.49384 NA intron (NM_001122679, intron 3 of 28) intron (NM_001122679, intron 3 of 28) 286414 NR_109894 101927862 Hs.659376 NR_109894 ENSG00000253978 CTB-178M22.2 - uncharacterized LOC101927862 ncRNA 13-PTNLD9-TUMOR_peak_28660 chr2 147391917 147392158 + 16.49384 NA Intergenic Intergenic 47412 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein, cytoplasmic 1 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_9643 chr11 44883829 44884123 + 16.49384 NA intron (NM_130783, intron 2 of 8) intron (NM_130783, intron 2 of 8) 87783 NM_001258320 9537 Hs.554791 NM_006034 HPRD:15545 TP53I11 PIG11 tumor protein p53 inducible protein 11 protein-coding 13-PTNLD9-TUMOR_peak_2010 chr1 62051415 62051658 + 16.49384 NA Intergenic Intergenic -68378 NR_073400 414927 Hs.123471 NR_073400 MGC34796 - sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) pseudogene pseudo 13-PTNLD9-TUMOR_peak_20038 chr16 87756981 87757162 + 16.49384 NA intron (NM_001184854, intron 5 of 9) intron (NM_001184854, intron 5 of 9) 42527 NM_017566 54758 Hs.123450 NM_017566 HPRD:11180 KLHDC4 - kelch domain containing 4 protein-coding 13-PTNLD9-TUMOR_peak_3497 chr1 149577548 149577749 + 16.49110 NA non-coding (NR_111957, exon 2 of 4) non-coding (NR_111957, exon 2 of 4) 1181 NR_024511 728855 Hs.456578 NR_024510 ENSG00000235398 LINC00623 CH17-118O6.2 long intergenic non-protein coding RNA 623 ncRNA 13-PTNLD9-TUMOR_peak_53880 chr9 89988927 89989162 + 16.48113 NA Intergenic Intergenic -123099 NM_001288731 1612 Hs.380277 NM_004938 HPRD:02902 DAPK1 DAPK death-associated protein kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_38719 chr4 82554145 82554310 + 16.47440 NA Intergenic Intergenic -161145 NM_001300736 153020 Hs.591696 NM_152545 HPRD:17955 RASGEF1B GPIG4 RasGEF domain family, member 1B protein-coding 13-PTNLD9-TUMOR_peak_37478 chr3 197216991 197217263 + 16.47440 NA Intergenic Intergenic 65731 NM_203314 622 Hs.274539 NM_004051 HPRD:04344 BDH1 BDH|SDR9C1 3-hydroxybutyrate dehydrogenase, type 1 protein-coding 13-PTNLD9-TUMOR_peak_33588 chr3 4866663 4866841 + 16.47042 NA intron (NM_001168272, intron 59 of 60) intron (NM_001168272, intron 59 of 60) -73158 NR_037903 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_50737 chr8 42079519 42079859 + 16.46855 NA Intergenic Intergenic -14495 NM_000930 5327 Hs.491582 NM_000930 HPRD:01419 PLAT T-PA|TPA plasminogen activator, tissue protein-coding 13-PTNLD9-TUMOR_peak_52589 chr9 437816 437990 + 16.46855 NA intron (NM_001193536, intron 38 of 46) intron (NM_001193536, intron 38 of 46) -32391 NM_001256876 23189 Hs.306764 NM_015158 HPRD:09651 KANK1 ANKRD15|CPSQ2|KANK KN motif and ankyrin repeat domains 1 protein-coding 13-PTNLD9-TUMOR_peak_4643 chr1 181361823 181362070 + 16.46855 NA Intergenic Intergenic -90740 NM_001205293 777 Hs.437444 NM_000721 HPRD:03006 CACNA1E BII|CACH6|CACNL1A6|Cav2.3 calcium channel, voltage-dependent, R type, alpha 1E subunit protein-coding 13-PTNLD9-TUMOR_peak_19889 chr16 81633867 81634225 + 16.45540 NA intron (NM_030629, intron 1 of 20) L1MB5|LINE|L1 -10907 NR_106759 102465251 NR_106759 MIR6504 hsa-mir-6504 microRNA 6504 ncRNA 13-PTNLD9-TUMOR_peak_9280 chr11 19701742 19702094 + 16.45540 NA intron (NM_001111018, intron 1 of 37) intron (NM_001111018, intron 1 of 37) -32963 NM_145117 89797 Hs.64341 NM_145117 HPRD:07385 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 13-PTNLD9-TUMOR_peak_19083 chr16 31711756 31712064 + 16.45540 NA promoter-TSS (NR_024034) promoter-TSS (NR_024034) -24 NR_024034 100132341 Hs.715792 NM_024048 ENSG00000131797 CLUHP3 C16orf67|KIAA0664L3|KIAA0664P3 clustered mitochondria (cluA/CLU1) homolog pseudogene 3 ncRNA 13-PTNLD9-TUMOR_peak_33994 chr3 17536021 17536341 + 16.45540 NA intron (NM_001134381, intron 4 of 23) (CTGTG)n|Simple_repeat|Simple_repeat 205331 NM_001134381 9779 Hs.475629 NM_014744 HPRD:10262 TBC1D5 - TBC1 domain family, member 5 protein-coding 13-PTNLD9-TUMOR_peak_28110 chr2 113450102 113450368 + 16.45540 NA Intergenic Intergenic 46801 NM_005415 6574 Hs.187946 NM_005415 HPRD:08846 SLC20A1 GLVR1|Glvr-1|PIT1|PiT-1 solute carrier family 20 (phosphate transporter), member 1 protein-coding 13-PTNLD9-TUMOR_peak_53853 chr9 88772449 88772578 + 16.45540 NA TTS (NR_110996) TTS (NR_110996) 30058 NR_110996 101927623 Hs.575644 NR_110996 LOC101927623 - uncharacterized LOC101927623 ncRNA 13-PTNLD9-TUMOR_peak_30749 chr20 30424027 30424193 + 16.45177 NA Intergenic Intergenic 9310 NM_004118 2307 Hs.516971 NM_004118 HPRD:04246 FOXS1 FKHL18|FREAC10 forkhead box S1 protein-coding 13-PTNLD9-TUMOR_peak_49354 chr7 139498126 139498307 + 16.44358 NA intron (NM_001166254, intron 3 of 14) intron (NM_001166254, intron 3 of 14) 20169 NM_001166254 6916 Hs.520757 NM_001061 HPRD:02035 TBXAS1 BDPLT14|CYP5|CYP5A1|GHOSAL|THAS|TS|TXAS|TXS thromboxane A synthase 1 (platelet) protein-coding 13-PTNLD9-TUMOR_peak_44156 chr6 24948580 24948982 + 16.44358 NA intron (NM_001286446, intron 1 of 13) AluSp|SINE|Alu -12501 NM_001286445 9750 Hs.559459 NM_014722 HPRD:12881 FAM65B C6orf32|DIFF40|DIFF48|MYONAP|PL48 family with sequence similarity 65, member B protein-coding 13-PTNLD9-TUMOR_peak_34850 chr3 64963062 64963327 + 16.44358 NA intron (NR_038264, intron 4 of 5) MLT1K|LTR|ERVL-MaLR 257511 NR_030317 693126 NR_030317 miRBase:MI0003598 MIR548A2 MIRN548A2 microRNA 548a-2 ncRNA 13-PTNLD9-TUMOR_peak_12151 chr12 12162110 12162454 + 16.44358 NA Intergenic Intergenic -61596 NM_138723 79370 Hs.210343 NM_030766 HPRD:05841 BCL2L14 BCLG BCL2-like 14 (apoptosis facilitator) protein-coding 13-PTNLD9-TUMOR_peak_40338 chr5 11251499 11251631 + 16.44166 NA intron (NM_001288717, intron 8 of 20) MER119|DNA|hAT-Charlie 337464 NM_001288715 1501 Hs.314543 NM_001332 HPRD:09181 CTNND2 GT24|NPRAP catenin (cadherin-associated protein), delta 2 protein-coding 13-PTNLD9-TUMOR_peak_30823 chr20 32768553 32768799 + 16.44166 NA Intergenic AluSg|SINE|Alu -68591 NM_003908 8894 Hs.429180 NM_003908 HPRD:04882 EIF2S2 EIF2|EIF2B|EIF2beta|PPP1R67|eIF-2-beta eukaryotic translation initiation factor 2, subunit 2 beta, 38kDa protein-coding 13-PTNLD9-TUMOR_peak_11353 chr11 117778030 117778283 + 16.44166 NA TTS (NM_001206790) TTS (NM_001206790) 22012 NM_001206790 84000 Hs.266308 NM_032046 HPRD:07493 TMPRSS13 MSP|MSPL|MSPS|TMPRSS11 transmembrane protease, serine 13 protein-coding 13-PTNLD9-TUMOR_peak_30372 chr20 6975183 6975440 + 16.44166 NA Intergenic Intergenic 226566 NM_001200 650 Hs.73853 NM_001200 HPRD:00206 BMP2 BDA2|BMP2A bone morphogenetic protein 2 protein-coding 13-PTNLD9-TUMOR_peak_33604 chr3 5068250 5068831 + 16.44080 NA Intergenic Intergenic 47443 NM_003670 8553 Hs.744856 NM_003670 HPRD:16050 BHLHE40 BHLHB2|DEC1|HLHB2|SHARP-2|STRA13|Stra14 basic helix-loop-helix family, member e40 protein-coding 13-PTNLD9-TUMOR_peak_41099 chr5 66611163 66611394 + 16.43566 NA Intergenic Intergenic -118661 NM_005582 4064 Hs.87205 NM_005582 HPRD:03749 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 13-PTNLD9-TUMOR_peak_39651 chr4 152993382 152993620 + 16.43566 NA Intergenic Intergenic -28404 NR_121628 100996286 Hs.322462 NR_121627 ENSG00000245954 LOC100996286 - uncharacterized LOC100996286 ncRNA 13-PTNLD9-TUMOR_peak_17564 chr15 70488982 70489323 + 16.43566 NA Intergenic Intergenic -98896 NM_001105192 7090 Hs.287362 NM_005078 HPRD:02558 TLE3 ESG|ESG3|GRG3|HsT18976 transducin-like enhancer of split 3 protein-coding 13-PTNLD9-TUMOR_peak_8955 chr11 8255537 8255898 + 16.43566 NA intron (NM_001270428, intron 1 of 3) intron (NM_001270428, intron 1 of 3) 29708 NR_073006 4004 Hs.654426 NM_002315 HPRD:01738 LMO1 RBTN1|RHOM1|TTG1 LIM domain only 1 (rhombotin 1) protein-coding 13-PTNLD9-TUMOR_peak_16303 chr14 76178268 76178486 + 16.43393 NA intron (NM_015072, intron 9 of 31) intron (NM_015072, intron 9 of 31) 50826 NM_015072 23093 Hs.709609 NM_015072 HPRD:08309 TTLL5 CORD19|KIAA0998|STAMP tubulin tyrosine ligase-like family, member 5 protein-coding 13-PTNLD9-TUMOR_peak_54442 chr9 114287927 114288154 + 16.43393 NA intron (NM_001007169, intron 1 of 5) L2a|LINE|L2 601 NM_133464 158399 Hs.660784 NM_133464 HPRD:18345 ZNF483 ZKSCAN16|ZSCAN48 zinc finger protein 483 protein-coding 13-PTNLD9-TUMOR_peak_17377 chr15 59862634 59862926 + 16.43393 NA Intergenic Intergenic -41202 NM_004751 9245 Hs.194710 NM_004751 HPRD:06018 GCNT3 C2/4GnT|C24GNT|C2GNT2|C2GNTM|GNTM glucosaminyl (N-acetyl) transferase 3, mucin type protein-coding 13-PTNLD9-TUMOR_peak_51095 chr8 68236324 68236735 + 16.43393 NA intron (NM_006421, intron 1 of 38) AluSc|SINE|Alu 19383 NM_006421 10565 Hs.656902 NM_006421 HPRD:09163 ARFGEF1 ARFGEP1|BIG1|P200 ADP-ribosylation factor guanine nucleotide-exchange factor 1 (brefeldin A-inhibited) protein-coding 13-PTNLD9-TUMOR_peak_41504 chr5 90562257 90562416 + 16.43393 NA Intergenic Intergenic 47883 NR_103548 100505994 Hs.628363 NR_103548 ENSG00000248323 LUCAT1 SCAL1 lung cancer associated transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_52147 chr8 134003876 134004075 + 16.43393 NA intron (NM_003235, intron 35 of 47) intron (NM_003235, intron 35 of 47) 54851 NR_107002 102466865 NR_107002 MIR7848 hsa-mir-7848 microRNA 7848 ncRNA 13-PTNLD9-TUMOR_peak_48522 chr7 100157486 100157642 + 16.43393 NA intron (NM_006076, intron 6 of 11) intron (NM_006076, intron 6 of 11) 13706 NM_001168682 100316904 Hs.633863 NM_001168682 ENSG00000205307 SAP25 - Sin3A-associated protein, 25kDa protein-coding 13-PTNLD9-TUMOR_peak_25436 chr19 50676463 50676597 + 16.43393 NA Intergenic Intergenic -9992 NM_152358 126123 Hs.414175 NM_152358 HPRD:14578 IZUMO2 C19orf41|PLAL6978|PRO21961|SCRL IZUMO family member 2 protein-coding 13-PTNLD9-TUMOR_peak_789 chr1 27179716 27179970 + 16.43393 NA intron (NM_032283, intron 7 of 7) intron (NM_032283, intron 7 of 7) -9790 NM_006142 2810 Hs.523718 NM_006142 HPRD:03185 SFN YWHAS stratifin protein-coding 13-PTNLD9-TUMOR_peak_18743 chr16 21846033 21846405 + 16.43321 NA Intergenic CpG -15724 NR_003370 730092 Hs.31290 NR_003370 RRN3P1 - RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_27635 chr2 92224296 92224414 + 16.42927 NA Intergenic Intergenic 95196 NR_027714 440888 Hs.730239 NM_001032412 ENSG00000226481 ACTR3BP2 FKSG73 ACTR3B pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_30944 chr20 35515714 35515889 + 16.42313 NA intron (NM_080628, intron 4 of 6) intron (NM_080628, intron 4 of 6) 11231 NM_080628 140711 Hs.472630 NM_080628 HPRD:18554 TLDC2 C20orf118|dJ132F21.2 TBC/LysM-associated domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_32133 chr21 33283580 33283744 + 16.42313 NA intron (NM_014586, intron 1 of 10) L2a|LINE|L2 38034 NM_014586 30811 Hs.109437 NM_014586 HPRD:09410 HUNK - hormonally up-regulated Neu-associated kinase protein-coding 13-PTNLD9-TUMOR_peak_7232 chr10 47074203 47074512 + 16.40665 NA Intergenic MLT1H2|LTR|ERVL-MaLR -9177 NM_005972 5540 Hs.524719 NM_005972 HPRD:03476 NPY4R NPY4-R|PP1|PPYR1|Y4 neuropeptide Y receptor Y4 protein-coding 13-PTNLD9-TUMOR_peak_48444 chr7 98809416 98809640 + 16.40665 NA Intergenic Intergenic -4439 NM_001145715 402569 Hs.253050 NM_001145715 ENSG00000185467 KPNA7 - karyopherin alpha 7 (importin alpha 8) protein-coding 13-PTNLD9-TUMOR_peak_43051 chr5 172382694 172382883 + 16.39959 NA non-coding (NR_026682, exon 4 of 4) non-coding (NR_026682, exon 4 of 4) 2990 NR_026683 100268168 Hs.519766 NR_026682 ENSG00000204758 LOC100268168 - uncharacterized LOC100268168 ncRNA 13-PTNLD9-TUMOR_peak_53629 chr9 75091996 75092262 + 16.39572 NA Intergenic Intergenic -44588 NM_138691 117531 Hs.670211 NM_138691 HPRD:05988 TMC1 DFNA36|DFNB11|DFNB7 transmembrane channel-like 1 protein-coding 13-PTNLD9-TUMOR_peak_33271 chr22 39129868 39130097 + 16.39088 NA TTS (NM_001199579) TTS (NM_001199579) 21485 NM_001199580 25777 Hs.517622 NM_015374 HPRD:15611 SUN2 UNC84B Sad1 and UNC84 domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_6118 chr1 244466250 244466417 + 16.39088 NA Intergenic L1MC4|LINE|L1 -49604 NM_001276349 200159 Hs.442703 NM_001012970 HPRD:13168 C1orf100 - chromosome 1 open reading frame 100 protein-coding 13-PTNLD9-TUMOR_peak_23526 chr18 77245233 77245444 + 16.39088 NA intron (NM_001278672, intron 8 of 8) intron (NM_001278672, intron 8 of 8) 85064 NM_172389 4772 Hs.534074 NM_006162 HPRD:02729 NFATC1 NF-ATC|NFAT2|NFATc nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1 protein-coding 13-PTNLD9-TUMOR_peak_53781 chr9 85104946 85105390 + 16.39088 NA Intergenic Intergenic 501481 NM_001001670 389763 Hs.209545 NM_001001670 HPRD:13531 SPATA31D1 FAM75D1 SPATA31 subfamily D, member 1 protein-coding 13-PTNLD9-TUMOR_peak_22088 chr17 74824437 74824620 + 16.39088 NA Intergenic Intergenic 29402 NR_110837 101928514 Hs.617206 NR_110837 LOC101928514 - uncharacterized LOC101928514 ncRNA 13-PTNLD9-TUMOR_peak_1333 chr1 41364203 41364563 + 16.38782 NA Intergenic L2c|LINE|L2 -36365 NM_133467 163732 Hs.355820 NM_133467 HPRD:06011 CITED4 - Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4 protein-coding 13-PTNLD9-TUMOR_peak_46606 chr6 171007651 171007847 + 16.37889 NA Intergenic AluSq|SINE|Alu -113969 NM_001199461 5134 Hs.367900 NM_002598 HPRD:02922 PDCD2 RP8|ZMYND7 programmed cell death 2 protein-coding 13-PTNLD9-TUMOR_peak_2024 chr1 62773775 62774045 + 16.37777 NA intron (NM_181712, intron 1 of 9) intron (NM_181712, intron 1 of 9) 11173 NM_181712 163782 Hs.283398 NM_181712 HPRD:14109 KANK4 ANKRD38|dJ1078M7.1 KN motif and ankyrin repeat domains 4 protein-coding 13-PTNLD9-TUMOR_peak_31333 chr20 47314415 47314612 + 16.37777 NA intron (NM_020820, intron 7 of 39) intron (NM_020820, intron 7 of 39) 129907 NM_020820 57580 Hs.153310 NM_020820 HPRD:06066 PREX1 P-REX1 phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1 protein-coding 13-PTNLD9-TUMOR_peak_47864 chr7 72881397 72881634 + 16.37777 NA intron (NM_032408, intron 9 of 19) AluSx|SINE|Alu 33406 NM_003508 8326 Hs.647029 NM_003508 HPRD:03460 FZD9 CD349|FZD3 frizzled class receptor 9 protein-coding 13-PTNLD9-TUMOR_peak_20002 chr16 85950128 85950471 + 16.37777 NA intron (NM_002163, intron 6 of 8) intron (NM_002163, intron 6 of 8) -1654 NR_106832 102466732 NR_106832 MIR6774 hsa-mir-6774 microRNA 6774 ncRNA 13-PTNLD9-TUMOR_peak_33676 chr3 9258408 9258729 + 16.37777 NA promoter-TSS (NR_103443) promoter-TSS (NR_103443) -11 NR_103443 100288831 Hs.694646 NR_103443 SRGAP3-AS3 - SRGAP3 antisense RNA 3 ncRNA 13-PTNLD9-TUMOR_peak_43403 chr6 1111173 1111596 + 16.37777 NA Intergenic Intergenic -9817 NR_027115 285768 Hs.209463 NR_027115 LOC285768 - uncharacterized LOC285768 ncRNA 13-PTNLD9-TUMOR_peak_38938 chr4 99851103 99851281 + 16.37746 NA promoter-TSS (NM_001130678) promoter-TSS (NM_001130678) 594 NM_001130679 1977 Hs.249718 NM_001968 EIF4E AUTS19|CBP|EIF4E1|EIF4EL1|EIF4F eukaryotic translation initiation factor 4E protein-coding 13-PTNLD9-TUMOR_peak_18801 chr16 23916413 23916700 + 16.37746 NA intron (NM_212535, intron 2 of 16) intron (NM_212535, intron 2 of 16) 69256 NM_212535 5579 Hs.460355 NM_002738 HPRD:01499 PRKCB PKC-beta|PKCB|PRKCB1|PRKCB2 protein kinase C, beta protein-coding 13-PTNLD9-TUMOR_peak_25584 chr19 53558384 53558725 + 16.37746 NA Intergenic MER50|LTR|ERV1 10563 NM_001191055 100271846 Hs.420445 NM_001191055 ENSG00000268964 ERVV-2 ENVV2|HERV-V2 endogenous retrovirus group V, member 2 protein-coding 13-PTNLD9-TUMOR_peak_18522 chr16 11457172 11457385 + 16.37746 NA Intergenic Intergenic 17967 NM_152308 116028 Hs.347524 NM_152308 HPRD:14497 RMI2 BLAP18|C16orf75 RecQ mediated genome instability 2 protein-coding 13-PTNLD9-TUMOR_peak_42216 chr5 137224978 137225209 + 16.37252 NA promoter-TSS (NM_014386) promoter-TSS (NM_014386) -32 NM_001258449 27039 Hs.716884 NM_014386 HPRD:05238 PKD2L2 TRPP5 polycystic kidney disease 2-like 2 protein-coding 13-PTNLD9-TUMOR_peak_10929 chr11 93761601 93761965 + 16.37252 NA intron (NM_001098672, intron 1 of 19) intron (NM_001098672, intron 1 of 19) 7405 NM_001098672 341208 Hs.669645 NM_001098672 ENSG00000181333 HEPHL1 - hephaestin-like 1 protein-coding 13-PTNLD9-TUMOR_peak_40893 chr5 55164759 55164989 + 16.37252 NA intron (NM_001242636, intron 3 of 14) intron (NM_001242636, intron 3 of 14) 15724 NM_001242639 133396 Hs.55378 NM_139017 HPRD:17145 IL31RA CRL|CRL3|GLM-R|GLMR|GPL|IL-31RA|PLCA2|PRO21384|hGLM-R interleukin 31 receptor A protein-coding 13-PTNLD9-TUMOR_peak_23461 chr18 72508962 72509179 + 16.37252 NA intron (NM_017757, intron 3 of 7) intron (NM_017757, intron 3 of 7) 166151 NM_001146189 55628 Hs.536490 NM_017757 HPRD:11713 ZNF407 - zinc finger protein 407 protein-coding 13-PTNLD9-TUMOR_peak_17357 chr15 58813783 58814166 + 16.37252 NA intron (NM_000236, intron 1 of 8) intron (NM_000236, intron 1 of 8) -23040 NR_120338 101928694 Hs.655781 NR_120338 ENSG00000259293 LOC101928694 - uncharacterized LOC101928694 ncRNA 13-PTNLD9-TUMOR_peak_27187 chr2 69945145 69945320 + 16.37252 NA Intergenic Intergenic -23895 NM_001153 307 Hs.422986 NM_001153 HPRD:00112 ANXA4 ANX4|HEL-S-274|PIG28|ZAP36 annexin A4 protein-coding 13-PTNLD9-TUMOR_peak_8445 chr10 120766450 120766706 + 16.37252 NA Intergenic Intergenic -22650 NM_199461 340719 Hs.591918 NM_199461 HPRD:16302 NANOS1 NOS1|SPGF12 nanos homolog 1 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_4093 chr1 160221830 160221960 + 16.37252 NA intron (NR_028104, intron 1 of 12) intron (NR_028104, intron 1 of 12) 10382 NR_028106 50717 Hs.632447 NM_015726 HPRD:18300 DCAF8 GAN2|H326|WDR42A DDB1 and CUL4 associated factor 8 protein-coding 13-PTNLD9-TUMOR_peak_31609 chr20 53671058 53671283 + 16.37252 NA Intergenic Intergenic -368411 NR_110629 102723578 Hs.446269 NR_110629 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 13-PTNLD9-TUMOR_peak_35458 chr3 115748255 115748452 + 16.37252 NA intron (NM_002338, intron 2 of 6) intron (NM_002338, intron 2 of 6) -330518 NR_109998 101926903 Hs.26479 NR_109998 ENSG00000240922 LSAMP-AS1 - uncharacterized LOC101926903 ncRNA 13-PTNLD9-TUMOR_peak_6570 chr10 17008167 17008390 + 16.37252 NA intron (NM_001081, intron 31 of 66) intron (NM_001081, intron 31 of 66) -148825 NM_012425 6251 Hs.524161 NM_012425 HPRD:01551 RSU1 RSP-1 Ras suppressor protein 1 protein-coding 13-PTNLD9-TUMOR_peak_48806 chr7 107949490 107949683 + 16.37102 NA intron (NM_005010, intron 3 of 27) intron (NM_005010, intron 3 of 27) -68972 NM_001037132 4897 Hs.21422 NM_005010 HPRD:07207 NRCAM - neuronal cell adhesion molecule protein-coding 13-PTNLD9-TUMOR_peak_26064 chr2 9815591 9815834 + 16.37102 NA Intergenic Intergenic -44528 NM_006826 10971 Hs.74405 NM_006826 HPRD:00886 YWHAQ 14-3-3|1C5|HS1 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta protein-coding 13-PTNLD9-TUMOR_peak_54370 chr9 111202366 111202571 + 16.37102 NA Intergenic Intergenic 415807 NM_006686 10880 Hs.534390 NM_006686 ACTL7B Tact1 actin-like 7B protein-coding 13-PTNLD9-TUMOR_peak_1617 chr1 46689253 46689407 + 16.37102 NA Intergenic Intergenic -3353 NM_001243766 55624 Hs.525134 NM_017739 HPRD:09493 POMGNT1 GNTI.2|GnT I.2|LGMD2O|MEB|MGAT1.2|gnT-I.2 protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) protein-coding 13-PTNLD9-TUMOR_peak_44428 chr6 30043821 30044011 + 16.35792 NA promoter-TSS (NM_025236).2 promoter-TSS (NM_025236).2 -288 NM_025236 80352 Hs.121178 NM_025236 HPRD:09600 RNF39 HZF|HZFW|LIRF ring finger protein 39 protein-coding 13-PTNLD9-TUMOR_peak_328 chr1 9402188 9402551 + 16.35792 NA intron (NM_025106, intron 1 of 2) intron (NM_025106, intron 1 of 2) 49428 NM_025106 80176 Hs.8261 NM_025106 HPRD:18106 SPSB1 SSB-1|SSB1 splA/ryanodine receptor domain and SOCS box containing 1 protein-coding 13-PTNLD9-TUMOR_peak_26509 chr2 31558829 31559076 + 16.35792 NA intron (NM_000379, intron 35 of 35) intron (NM_000379, intron 35 of 35) 78659 NM_000379 7498 Hs.250 NM_000379 HPRD:06363 XDH XO|XOR xanthine dehydrogenase protein-coding 13-PTNLD9-TUMOR_peak_15263 chr14 21443184 21443377 + 16.35371 NA Intergenic Intergenic -14685 NM_022734 64745 Hs.512693 NM_022734 HPRD:13379 METTL17 METT11D1 methyltransferase like 17 protein-coding 13-PTNLD9-TUMOR_peak_19050 chr16 31063571 31063740 + 16.33820 NA Intergenic MLT1J|LTR|ERVL-MaLR 12754 NM_001172670 79759 Hs.102928 NM_024706 HPRD:07828 ZNF668 - zinc finger protein 668 protein-coding 13-PTNLD9-TUMOR_peak_33395 chr22 43522950 43523130 + 16.33820 NA intron (NM_001197, intron 2 of 4) intron (NM_001197, intron 2 of 4) 16286 NM_001197 638 Hs.475055 NM_001197 HPRD:04547 BIK BIP1|BP4|NBK BCL2-interacting killer (apoptosis-inducing) protein-coding 13-PTNLD9-TUMOR_peak_20268 chr17 2796752 2797039 + 16.33820 NA intron (NM_015085, intron 2 of 24) intron (NM_015085, intron 2 of 24) 72294 NR_110818 101927911 Hs.626373 NR_110818 ENSG00000262884 LOC101927911 - uncharacterized LOC101927911 ncRNA 13-PTNLD9-TUMOR_peak_49774 chr7 154705549 154705887 + 16.33259 NA Intergenic Intergenic -14509 NR_024477 100132707 Hs.586358 NR_024476 ENSG00000214106 PAXIP1OS PAXIP1-AS2 PAXIP1 opposite strand ncRNA 13-PTNLD9-TUMOR_peak_5930 chr1 234947662 234947928 + 16.33259 NA Intergenic Intergenic 88006 NR_038856 100506810 Hs.586634 NR_038856 ENSG00000227630 LINC01132 - long intergenic non-protein coding RNA 1132 ncRNA 13-PTNLD9-TUMOR_peak_47084 chr7 24860590 24860797 + 16.33259 NA intron (NR_104111, intron 15 of 21) intron (NR_104111, intron 15 of 21) -63054 NM_001127454 1687 Hs.520708 NM_004403 HPRD:02996 DFNA5 ICERE-1 deafness, autosomal dominant 5 protein-coding 13-PTNLD9-TUMOR_peak_8983 chr11 8835832 8836198 + 16.33225 NA intron (NM_005418, intron 3 of 22) intron (NM_005418, intron 3 of 22) -3133 NM_139157 6764 Hs.117715 NM_005418 HPRD:00780 ST5 DENND2B|HTS1|p126 suppression of tumorigenicity 5 protein-coding 13-PTNLD9-TUMOR_peak_42781 chr5 156960145 156960359 + 16.32063 NA intron (NM_033274, intron 4 of 22) intron (NM_033274, intron 4 of 22) 42579 NM_033274 8728 Hs.483944 NM_023038 HPRD:04704 ADAM19 MADDAM|MLTNB ADAM metallopeptidase domain 19 protein-coding 13-PTNLD9-TUMOR_peak_26661 chr2 39798480 39798886 + 16.32063 NA intron (NR_037875, intron 5 of 5) L2c|LINE|L2 -93955 NM_001167959 130733 Hs.40808 NM_152390 HPRD:14577 TMEM178A TMEM178 transmembrane protein 178A protein-coding 13-PTNLD9-TUMOR_peak_4419 chr1 172608037 172608291 + 16.32063 NA Intergenic Intergenic -20021 NM_000639 356 Hs.2007 NM_000639 HPRD:00610 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6 Fas ligand (TNF superfamily, member 6) protein-coding 13-PTNLD9-TUMOR_peak_3916 chr1 156115768 156116005 + 16.31559 NA intron (NR_107005, intron 3 of 4) intron (NR_107005, intron 3 of 4) -3849 NM_001193301 64218 Hs.408846 NM_022367 HPRD:09528 SEMA4A CORD10|RP35|SEMAB|SEMB sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A protein-coding 13-PTNLD9-TUMOR_peak_12339 chr12 26278924 26279216 + 16.31314 NA Intergenic CpG -1067 NM_030762 79365 Hs.177841 NM_030762 HPRD:16204 BHLHE41 BHLHB3|DEC2|SHARP1|hDEC2 basic helix-loop-helix family, member e41 protein-coding 13-PTNLD9-TUMOR_peak_49545 chr7 148234627 148234853 + 16.31314 NA Intergenic Intergenic -52917 NM_145304 202865 Hs.352212 NM_145304 HPRD:12921 C7orf33 - chromosome 7 open reading frame 33 protein-coding 13-PTNLD9-TUMOR_peak_43216 chr5 177147160 177147385 + 16.31122 NA Intergenic L2b|LINE|L2 -47994 NR_026921 202181 Hs.189914 NR_026921 LOC202181 - SUMO-interacting motifs containing 1 pseudogene pseudo 13-PTNLD9-TUMOR_peak_43639 chr6 6679051 6679397 + 16.31122 NA Intergenic Intergenic -56165 NR_026970 285780 Hs.655737 NM_173675 HPRD:08165 LY86-AS1 LY86-AS|LY86AS LY86 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_7234 chr10 47080773 47080964 + 16.31122 NA Intergenic Intergenic -2666 NM_005972 5540 Hs.524719 NM_005972 HPRD:03476 NPY4R NPY4-R|PP1|PPYR1|Y4 neuropeptide Y receptor Y4 protein-coding 13-PTNLD9-TUMOR_peak_45204 chr6 46458921 46459447 + 16.31122 NA promoter-TSS (NM_001251974) promoter-TSS (NM_001251974) -124 NM_001251974 10231 Hs.440168 NM_005822 HPRD:05342 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 13-PTNLD9-TUMOR_peak_1997 chr1 61751888 61752115 + 16.31122 NA intron (NM_001145511, intron 3 of 10) AluY|SINE|Alu -32811 NR_104180 645030 Hs.632410 NR_104180 NFIA-AS1 - NFIA antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_23174 chr18 47794815 47795058 + 16.30921 NA TTS (NM_001204136) TTS (NM_001204136) -2071 NM_145020 220136 Hs.658630 NM_145020 HPRD:09958 CCDC11 HTX6 coiled-coil domain containing 11 protein-coding 13-PTNLD9-TUMOR_peak_38862 chr4 89533484 89533659 + 16.30921 NA intron (NM_014606, intron 3 of 25) intron (NM_014606, intron 3 of 25) 19997 NM_014606 8916 Hs.35804 NM_014606 HPRD:16093 HERC3 - HECT and RLD domain containing E3 ubiquitin protein ligase 3 protein-coding 13-PTNLD9-TUMOR_peak_4529 chr1 178095870 178096271 + 16.30921 NA intron (NM_170692, intron 1 of 17) intron (NM_170692, intron 1 of 17) -32942 NR_027982 100302401 Hs.736117 NR_027982 ENSG00000224687 RASAL2-AS1 - RASAL2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_34674 chr3 53033319 53033562 + 16.30837 NA intron (NM_016329, intron 1 of 20) intron (NM_016329, intron 1 of 20) 46649 NM_016329 51460 Hs.343679 NM_016329 HPRD:09539 SFMBT1 RU1|SFMBT|hSFMBT Scm-like with four mbt domains 1 protein-coding 13-PTNLD9-TUMOR_peak_21280 chr17 44805083 44805289 + 16.30837 NA intron (NR_040116, intron 15 of 19) intron (NR_040116, intron 15 of 19) 90940 NM_030753 7473 Hs.445884 NM_030753 HPRD:01318 WNT3 INT4 wingless-type MMTV integration site family, member 3 protein-coding 13-PTNLD9-TUMOR_peak_623 chr1 21651058 21651388 + 16.30837 NA intron (NM_001113348, intron 1 of 18) intron (NM_001113348, intron 1 of 18) 20811 NM_001113348 1889 Hs.195080 NM_001397 HPRD:02690 ECE1 ECE endothelin converting enzyme 1 protein-coding 13-PTNLD9-TUMOR_peak_27104 chr2 65633881 65634202 + 16.30837 NA intron (NM_181784, intron 1 of 5) intron (NM_181784, intron 1 of 5) 25615 NM_181784 200734 Hs.59332 NM_181784 HPRD:18100 SPRED2 Spred-2 sprouty-related, EVH1 domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_22187 chr17 76919827 76920004 + 16.30837 NA intron (NM_003255, intron 1 of 4) intron (NM_003255, intron 1 of 4) 1557 NM_003255 7077 Hs.633514 NM_003255 HPRD:01784 TIMP2 CSC-21K|DDC8 TIMP metallopeptidase inhibitor 2 protein-coding 13-PTNLD9-TUMOR_peak_46690 chr7 1595573 1596150 + 16.30794 NA 5' UTR (NM_001097620, exon 1 of 9) 5' UTR (NM_001097620, exon 1 of 9) 205 NM_001097620 202915 Hs.592174 NM_152689 HPRD:14716 TMEM184A - transmembrane protein 184A protein-coding 13-PTNLD9-TUMOR_peak_16133 chr14 69350981 69351312 + 16.30794 NA intron (NM_001102, intron 13 of 20) intron (NM_001102, intron 13 of 20) -88186 NM_001244701 677 Hs.85155 NM_004926 HPRD:03041 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein-like 1 protein-coding 13-PTNLD9-TUMOR_peak_36988 chr3 184231629 184231768 + 16.30396 NA Intergenic CpG -47889 NM_004443 2049 Hs.2913 NM_004443 HPRD:03502 EPHB3 ETK2|HEK2|TYRO6 EPH receptor B3 protein-coding 13-PTNLD9-TUMOR_peak_36725 chr3 171657494 171657686 + 16.30396 NA Intergenic Intergenic -39060 NR_046852 100874219 Hs.730556 NR_046852 TMEM212-AS1 - TMEM212 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_52013 chr8 129154660 129154825 + 16.30396 NA Intergenic Intergenic -7620 NR_031613 100302281 NR_031613 miRBase:MI0006341 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 13-PTNLD9-TUMOR_peak_4939 chr1 201258863 201259169 + 16.30396 NA intron (NM_001005337, intron 1 of 13) intron (NM_001005337, intron 1 of 13) 6436 NM_000299 5317 Hs.497350 NM_000299 HPRD:03579 PKP1 B6P plakophilin 1 protein-coding 13-PTNLD9-TUMOR_peak_13736 chr12 108575423 108575665 + 16.30396 NA intron (NM_014653, intron 1 of 8) intron (NM_014653, intron 1 of 8) 52033 NM_014653 9671 Hs.143591 NM_014653 HPRD:17196 WSCD2 - WSC domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_17853 chr15 84402045 84402332 + 16.30396 NA intron (NM_001301110, intron 3 of 29) intron (NM_001301110, intron 3 of 29) 79350 NM_001301110 57188 Hs.459162 NM_207517 HPRD:12426 ADAMTSL3 ADAMTSL-3 ADAMTS-like 3 protein-coding 13-PTNLD9-TUMOR_peak_48491 chr7 99755405 99755575 + 16.29347 NA exon (NM_018275, exon 2 of 11) exon (NM_018275, exon 2 of 11) 812 NM_018275 55262 Hs.533139 NM_018275 HPRD:07716 C7orf43 - chromosome 7 open reading frame 43 protein-coding 13-PTNLD9-TUMOR_peak_50461 chr8 28177649 28177878 + 16.29347 NA intron (NM_006228, intron 1 of 3) intron (NM_006228, intron 1 of 3) 3114 NM_006228 5368 Hs.88218 NM_006228 HPRD:03268 PNOC PPNOC prepronociceptin protein-coding 13-PTNLD9-TUMOR_peak_4476 chr1 175173436 175173686 + 16.28730 NA Intergenic Intergenic -11332 NM_001162894 9674 Hs.518138 NM_014656 HPRD:13776 KIAA0040 - KIAA0040 protein-coding 13-PTNLD9-TUMOR_peak_11126 chr11 107798849 107799034 + 16.28730 NA promoter-TSS (NM_017516) promoter-TSS (NM_017516) -336 NM_017516 54734 Hs.354906 NM_017516 HPRD:11470 RAB39A RAB39 RAB39A, member RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_29675 chr2 208195695 208195913 + 16.28730 NA Intergenic Intergenic -76764 NR_110283 101927865 Hs.574609 NR_110283 ENSG00000234902 LOC101927865 - uncharacterized LOC101927865 ncRNA 13-PTNLD9-TUMOR_peak_37875 chr4 8190430 8190815 + 16.28730 NA Intergenic Intergenic -10438 NM_018986 54436 Hs.479116 NM_018986 HPRD:11556 SH3TC1 - SH3 domain and tetratricopeptide repeats 1 protein-coding 13-PTNLD9-TUMOR_peak_36203 chr3 141196131 141196402 + 16.28635 NA Intergenic Intergenic -9660 NM_006506 5922 Hs.98445 NM_006506 ENSG00000155903 RASA2 GAP1M RAS p21 protein activator 2 protein-coding 13-PTNLD9-TUMOR_peak_4984 chr1 201819295 201819502 + 16.28635 NA intron (NM_018085, intron 4 of 23) intron (NM_018085, intron 4 of 23) -13103 NR_106797 102466724 NR_106797 MIR6739 hsa-mir-6739 microRNA 6739 ncRNA 13-PTNLD9-TUMOR_peak_36441 chr3 153002201 153002420 + 16.28635 NA Intergenic Intergenic 122309 NM_002886 5912 Hs.98643 NM_002886 RAP2B - RAP2B, member of RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_2229 chr1 77464373 77464638 + 16.28635 NA intron (NM_030965, intron 2 of 4) intron (NM_030965, intron 2 of 4) -61323 NR_106978 102466995 NR_106978 MIR7156 hsa-mir-7156 microRNA 7156 ncRNA 13-PTNLD9-TUMOR_peak_20048 chr16 87901949 87902338 + 16.28343 NA intron (NM_003486, intron 1 of 9) intron (NM_003486, intron 1 of 9) 957 NM_003486 8140 Hs.513797 NM_003486 HPRD:02552 SLC7A5 4F2LC|CD98|D16S469E|E16|LAT1|MPE16|hLAT1 solute carrier family 7 (amino acid transporter light chain, L system), member 5 protein-coding 13-PTNLD9-TUMOR_peak_4961 chr1 201445815 201446009 + 16.27647 NA Intergenic Intergenic -7613 NM_012396 23612 Hs.268557 NM_012396 HPRD:09519 PHLDA3 TIH1 pleckstrin homology-like domain, family A, member 3 protein-coding 13-PTNLD9-TUMOR_peak_28093 chr2 113175687 113175818 + 16.27441 NA intron (NM_005054, intron 4 of 22).2 L2|LINE|L2 15355 NM_005054 84220 Hs.469630 NM_005054 HPRD:04128 RGPD5 BS-63|BS63|HEL161|RGP5 RANBP2-like and GRIP domain containing 5 protein-coding 13-PTNLD9-TUMOR_peak_37832 chr4 7432185 7432424 + 16.26391 NA 3' UTR (NM_001085382, exon 1 of 1) 3' UTR (NM_001085382, exon 1 of 1) 4396 NM_001085382 768239 Hs.662523 NM_001085382 ENSG00000178597 PSAPL1 - prosaposin-like 1 (gene/pseudogene) protein-coding 13-PTNLD9-TUMOR_peak_8419 chr10 118980770 118981058 + 16.26391 NA Intergenic Intergenic -19670 NM_003054 6571 Hs.596992 NM_003054 HPRD:01896 SLC18A2 SVAT|SVMT|VAT2|VMAT2 solute carrier family 18 (vesicular monoamine transporter), member 2 protein-coding 13-PTNLD9-TUMOR_peak_35559 chr3 122252822 122252963 + 16.26391 NA 3' UTR (NM_001146106, exon 10 of 10) 3' UTR (NM_001146106, exon 10 of 10) -19106 NR_026698 3836 Hs.161008 NM_002264 HPRD:02819 KPNA1 IPOA5|NPI-1|RCH2|SRP1 karyopherin alpha 1 (importin alpha 5) protein-coding 13-PTNLD9-TUMOR_peak_56675 chrX 152973957 152974253 + 16.26391 NA intron (NM_005745, intron 4 of 7) intron (NM_005745, intron 4 of 7) 15451 NM_001139457 10134 Hs.522817 NM_005745 HPRD:02319 BCAP31 6C6-AG|BAP31|CDM|DDCH|DXS1357E B-cell receptor-associated protein 31 protein-coding 13-PTNLD9-TUMOR_peak_25675 chr19 55727915 55728203 + 16.26096 NA Intergenic Intergenic -7185 NM_001161440 5794 Hs.179770 NM_002842 HPRD:03942 PTPRH R-PTP-H|SAP1 protein tyrosine phosphatase, receptor type, H protein-coding 13-PTNLD9-TUMOR_peak_21801 chr17 63399804 63400043 + 16.26096 NA Intergenic Intergenic 157817 NM_004655 8313 Hs.156527 NM_004655 HPRD:04935 AXIN2 AXIL|ODCRCS axin 2 protein-coding 13-PTNLD9-TUMOR_peak_49894 chr7 158820483 158820691 + 16.25958 NA TTS (NM_003382) TTS (NM_003382) 19542 NR_024394 154822 Hs.544783 NM_198345 ENSG00000231419 LINC00689 - long intergenic non-protein coding RNA 689 ncRNA 13-PTNLD9-TUMOR_peak_33621 chr3 7057345 7057853 + 16.24605 NA intron (NM_181874, intron 1 of 10) MLT1F1|LTR|ERVL-MaLR 154797 NM_000844 2917 Hs.606393 NM_000844 HPRD:04979 GRM7 GLUR7|GPRC1G|MGLU7|MGLUR7|PPP1R87 glutamate receptor, metabotropic 7 protein-coding 13-PTNLD9-TUMOR_peak_22947 chr18 34277898 34278202 + 16.24605 NA intron (NM_001281739, intron 13 of 23) intron (NM_001281739, intron 13 of 23) -131030 NM_020776 57536 Hs.4045 NM_020776 HPRD:17211 KIAA1328 - KIAA1328 protein-coding 13-PTNLD9-TUMOR_peak_1171 chr1 37813025 37813331 + 16.24605 NA Intergenic AluJb|SINE|Alu 126866 NR_038842 728431 Hs.380738 NR_038842 ENSG00000233621 LINC01137 - long intergenic non-protein coding RNA 1137 ncRNA 13-PTNLD9-TUMOR_peak_23252 chr18 54755324 54755506 + 16.24605 NA Intergenic Intergenic -16065 NR_048536 100885779 Hs.742426 NR_048536 ENSG00000258609 LINC-ROR lincRNA-RoR long intergenic non-protein coding RNA, regulator of reprogramming ncRNA 13-PTNLD9-TUMOR_peak_51976 chr8 128521804 128522049 + 16.24605 NA Intergenic L2c|LINE|L2 -27542 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLo-1|LINC00860 cancer susceptibility candidate 8 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_35507 chr3 119864438 119864690 + 16.24236 NA Intergenic MER5A1|DNA|hAT-Charlie -51300 NM_002093 2932 Hs.445733 NM_002093 HPRD:05418 GSK3B - glycogen synthase kinase 3 beta protein-coding 13-PTNLD9-TUMOR_peak_41871 chr5 122181946 122182206 + 16.24236 NA intron (NM_014035, intron 1 of 6) intron (NM_014035, intron 1 of 6) 916 NM_014035 28966 Hs.483200 NM_014035 HPRD:15413 SNX24 PRO1284 sorting nexin 24 protein-coding 13-PTNLD9-TUMOR_peak_28035 chr2 111321106 111321237 + 16.24140 NA intron (NM_005054, intron 4 of 22).3 L2|LINE|L2 13507 NM_005054 84220 Hs.469630 NM_005054 HPRD:04128 RGPD5 BS-63|BS63|HEL161|RGP5 RANBP2-like and GRIP domain containing 5 protein-coding 13-PTNLD9-TUMOR_peak_6903 chr10 33742038 33742343 + 16.23528 NA Intergenic Intergenic -118357 NM_001244973 8829 Hs.131704 NM_003873 HPRD:03642 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 13-PTNLD9-TUMOR_peak_28819 chr2 157792192 157792433 + 16.23528 NA Intergenic Intergenic -322028 NM_014568 11227 Hs.269027 NM_014568 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 13-PTNLD9-TUMOR_peak_17495 chr15 67426414 67426679 + 16.23528 NA intron (NM_001145102, intron 1 of 8) intron (NM_001145102, intron 1 of 8) -3813 NM_001145103 4088 Hs.727986 NM_005902 HPRD:04380 SMAD3 HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3 SMAD family member 3 protein-coding 13-PTNLD9-TUMOR_peak_14465 chr13 27557227 27557498 + 16.23528 NA Intergenic Intergenic -142308 NR_046547 100874070 Hs.524923 NR_046547 USP12-AS1 - USP12 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_50694 chr8 41009158 41009417 + 16.23528 NA Intergenic Intergenic 157703 NM_003012 6422 Hs.213424 NM_003012 HPRD:09165 SFRP1 FRP|FRP-1|FRP1|FrzA|SARP2 secreted frizzled-related protein 1 protein-coding 13-PTNLD9-TUMOR_peak_52333 chr8 141997800 141998043 + 16.23528 NA intron (NM_005607, intron 1 of 31) AluJb|SINE|Alu 13491 NM_153831 5747 Hs.395482 NM_005607 HPRD:02859 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_9618 chr11 43811731 43811926 + 16.23528 NA intron (NM_016142, intron 3 of 10) intron (NM_016142, intron 3 of 10) -90529 NM_139178 221120 Hs.720708 NM_139178 HPRD:16793 ALKBH3 ABH3|DEPC-1|DEPC1|PCA1 alkB, alkylation repair homolog 3 (E. coli) protein-coding 13-PTNLD9-TUMOR_peak_26434 chr2 28668864 28669021 + 16.23415 NA Intergenic Intergenic -49996 NM_001170585 151056 Hs.444933 NM_153021 HPRD:15141 PLB1 PLB|PLB/LIP|hPLB phospholipase B1 protein-coding 13-PTNLD9-TUMOR_peak_47214 chr7 33762040 33762548 + 16.23415 NA Intergenic Intergenic -182229 NM_133468 168667 Hs.660998 NM_133468 HPRD:16368 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 13-PTNLD9-TUMOR_peak_33882 chr3 14294754 14294953 + 16.23415 NA Intergenic Intergenic 74625 NM_014463 27258 Hs.111632 NM_014463 LSM3 SMX4|USS2|YLR438C LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_51911 chr8 126525389 126525726 + 16.23415 NA Intergenic Intergenic 81106 NM_001282985 10221 Hs.444947 NM_025195 HPRD:09863 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 13-PTNLD9-TUMOR_peak_37391 chr3 195574101 195574388 + 16.22980 NA Intergenic Intergenic 35022 NR_106887 102465977 NR_106887 MIR6829 hsa-mir-6829 microRNA 6829 ncRNA 13-PTNLD9-TUMOR_peak_9937 chr11 59317814 59318243 + 16.22796 NA Intergenic Intergenic 35642 NM_001004711 390199 Hs.553757 NM_001004711 HPRD:17728 OR4D9 OR11-253 olfactory receptor, family 4, subfamily D, member 9 protein-coding 13-PTNLD9-TUMOR_peak_36001 chr3 134030716 134031451 + 16.22138 NA Intergenic Intergenic 55621 NR_106885 102466744 NR_106885 MIR6827 hsa-mir-6827 microRNA 6827 ncRNA 13-PTNLD9-TUMOR_peak_42782 chr5 156975477 156975867 + 16.21286 NA intron (NM_033274, intron 3 of 22) intron (NM_033274, intron 3 of 22) 27159 NM_033274 8728 Hs.483944 NM_023038 HPRD:04704 ADAM19 MADDAM|MLTNB ADAM metallopeptidase domain 19 protein-coding 13-PTNLD9-TUMOR_peak_54763 chr9 127615149 127615598 + 16.21286 NA promoter-TSS (NM_001276376) promoter-TSS (NM_001276376) -323 NM_001276374 401551 Hs.343383 NM_001045476 ENSG00000136918 WDR38 - WD repeat domain 38 protein-coding 13-PTNLD9-TUMOR_peak_19027 chr16 30786717 30787012 + 16.21286 NA 3' UTR (NM_001207034, exon 18 of 18) 3' UTR (NM_001207034, exon 18 of 18) 11659 NM_001080417 23361 Hs.301094 NM_001080417 ENSG00000102870 ZNF629 ZNF|ZNF65 zinc finger protein 629 protein-coding 13-PTNLD9-TUMOR_peak_8954 chr11 8248978 8249321 + 16.20772 NA intron (NM_002315, intron 2 of 3) MIR|SINE|MIR 36276 NR_073006 4004 Hs.654426 NM_002315 HPRD:01738 LMO1 RBTN1|RHOM1|TTG1 LIM domain only 1 (rhombotin 1) protein-coding 13-PTNLD9-TUMOR_peak_6326 chr10 3853573 3853932 + 16.20280 NA Intergenic Intergenic -26279 NM_001160124 1316 Hs.4055 NM_001300 HPRD:03632 KLF6 BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9 Kruppel-like factor 6 protein-coding 13-PTNLD9-TUMOR_peak_1631 chr1 46986276 46986480 + 16.19988 NA Intergenic Intergenic 13710 NM_172225 127343 Hs.375623 NM_147192 HPRD:07593 DMBX1 MBX|OTX3|PAXB diencephalon/mesencephalon homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_41677 chr5 106805308 106805510 + 16.19783 NA intron (NM_001962, intron 1 of 4) intron (NM_001962, intron 1 of 4) 201187 NM_001962 1946 Hs.288741 NM_001962 HPRD:03324 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin-A5 protein-coding 13-PTNLD9-TUMOR_peak_40367 chr5 14039742 14040097 + 16.19528 NA Intergenic MER5A1|DNA|hAT-Charlie -95330 NM_001369 1767 Hs.212360 NM_001369 HPRD:04514 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein, axonemal, heavy chain 5 protein-coding 13-PTNLD9-TUMOR_peak_3830 chr1 155017434 155017605 + 16.18583 NA TTS (NR_040772) TTS (NR_040772) 6122 NR_040772 100505666 Hs.657533 NR_040772 LOC100505666 - uncharacterized LOC100505666 ncRNA 13-PTNLD9-TUMOR_peak_41798 chr5 114750989 114751182 + 16.18583 NA Intergenic Intergenic -118627 NM_001040440 153733 Hs.436121 NM_152549 HPRD:11346 CCDC112 MBC1 coiled-coil domain containing 112 protein-coding 13-PTNLD9-TUMOR_peak_42465 chr5 143365355 143365743 + 16.18434 NA Intergenic Intergenic 173823 NM_021182 57824 Hs.158320 NM_021182 HPRD:17089 HMHB1 HB-1|HLA-HB1 histocompatibility (minor) HB-1 protein-coding 13-PTNLD9-TUMOR_peak_9388 chr11 28760112 28760413 + 16.18434 NA Intergenic Intergenic -261167 NR_107035 102466876 NR_107035 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 13-PTNLD9-TUMOR_peak_5283 chr1 206698424 206698583 + 16.18434 NA intron (NM_182663, intron 1 of 5) intron (NM_182663, intron 1 of 5) 17640 NM_182663 83593 Hs.497579 NM_031437 HPRD:06117 RASSF5 Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3 Ras association (RalGDS/AF-6) domain family member 5 protein-coding 13-PTNLD9-TUMOR_peak_9620 chr11 43902267 43902569 + 16.18434 NA promoter-TSS (NM_139178) promoter-TSS (NM_139178) 61 NM_139178 221120 Hs.720708 NM_139178 HPRD:16793 ALKBH3 ABH3|DEPC-1|DEPC1|PCA1 alkB, alkylation repair homolog 3 (E. coli) protein-coding 13-PTNLD9-TUMOR_peak_49309 chr7 138437275 138437509 + 16.18219 NA exon (NM_130841, exon 10 of 21) exon (NM_130841, exon 10 of 21) 21390 NM_130841 50617 Hs.98967 NM_020632 HPRD:05576 ATP6V0A4 A4|ATP6N1B|ATP6N2|RDRTA2|RTA1C|RTADR|STV1|VPH1|VPP2 ATPase, H+ transporting, lysosomal V0 subunit a4 protein-coding 13-PTNLD9-TUMOR_peak_12962 chr12 56040030 56040328 + 16.18219 NA Intergenic CpG 9503 NM_206899 121130 Hs.554551 NM_206899 HPRD:14895 OR10P1 OR10P1P|OR10P2P|OR10P3P|OR12-7|OST701 olfactory receptor, family 10, subfamily P, member 1 protein-coding 13-PTNLD9-TUMOR_peak_49388 chr7 140346882 140347114 + 16.17589 NA Intergenic Intergenic -25955 NM_052853 90956 Hs.744886 NM_052853 HPRD:10631 ADCK2 AARF aarF domain containing kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_48977 chr7 128118761 128118971 + 16.17009 NA intron (NM_018396, intron 2 of 8) AluY|SINE|Alu 2083 NM_018396 55798 Hs.433213 NM_018396 HPRD:09705 METTL2B METL|METTL2|METTL2A|PSENIP1 methyltransferase like 2B protein-coding 13-PTNLD9-TUMOR_peak_44949 chr6 40702798 40703232 + 16.16745 NA Intergenic LTR16C|LTR|ERVL -147889 NM_020737 57497 Hs.250015 NM_020737 HPRD:17444 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_23424 chr18 68004478 68004644 + 16.16745 NA Intergenic Intergenic 47266 NR_110764 101060542 Hs.586967 NR_110764 ENSG00000266278 LOC101060542 - uncharacterized LOC101060542 ncRNA 13-PTNLD9-TUMOR_peak_31662 chr20 55898092 55898384 + 16.16608 NA Intergenic Intergenic -1591 NR_036219 100422883 NR_036219 miRBase:MI0015865 MIR4325 - microRNA 4325 ncRNA 13-PTNLD9-TUMOR_peak_23179 chr18 47834576 47834786 + 16.16532 NA Intergenic LTR16A|LTR|ERVL -19989 NM_014593 30827 Hs.180933 NM_014593 HPRD:10852 CXXC1 2410002I16Rik|5830420C16Rik|CFP1|CGBP|HsT2645|PCCX1|PHF18|SPP1|ZCGPC1|hCGBP CXXC finger protein 1 protein-coding 13-PTNLD9-TUMOR_peak_40351 chr5 13567019 13567166 + 16.16532 NA Intergenic Intergenic 377497 NM_001369 1767 Hs.212360 NM_001369 HPRD:04514 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein, axonemal, heavy chain 5 protein-coding 13-PTNLD9-TUMOR_peak_8863 chr11 3548518 3548772 + 16.16532 NA Intergenic Intergenic -99045 NR_002720 7221 Hs.131910 NR_002720 ENSG00000182048 TRPC2 - transient receptor potential cation channel, subfamily C, member 2, pseudogene pseudo 13-PTNLD9-TUMOR_peak_10713 chr11 77348613 77348921 + 16.16532 NA promoter-TSS (NM_001293) promoter-TSS (NM_001293) 84 NM_001293 1207 Hs.430733 NM_001293 HPRD:03694 CLNS1A CLCI|CLNS1B|ICln chloride channel, nucleotide-sensitive, 1A protein-coding 13-PTNLD9-TUMOR_peak_46658 chr7 1014699 1014916 + 16.15347 NA intron (NM_001031617, intron 1 of 2) CpG 428 NM_001031617 90639 Hs.121593 NM_001031617 COX19 - cytochrome c oxidase assembly homolog 19 (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_37878 chr4 8207733 8208349 + 16.15347 NA intron (NM_018986, intron 2 of 17) intron (NM_018986, intron 2 of 17) 6981 NM_018986 54436 Hs.479116 NM_018986 HPRD:11556 SH3TC1 - SH3 domain and tetratricopeptide repeats 1 protein-coding 13-PTNLD9-TUMOR_peak_45679 chr6 88441643 88442251 + 16.15347 NA Intergenic Intergenic -29962 NM_018064 55122 Hs.485915 NM_018064 HPRD:12864 AKIRIN2 C6orf166|FBI1|dJ486L4.2 akirin 2 protein-coding 13-PTNLD9-TUMOR_peak_30355 chr20 5100049 5100334 + 16.15185 NA promoter-TSS (NR_028370) promoter-TSS (NR_028370) -41 NR_028370 100302739 Hs.744934 NR_028370 PCNA-AS1 PCNA-AS|PCNAAS PCNA antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_5020 chr1 202153847 202154055 + 16.15185 NA intron (NR_002930, intron 15 of 21) intron (NR_002930, intron 15 of 21) -9167 NM_001017403 59352 Hs.497402 NM_021636 HPRD:05974 LGR6 GPCR|VTS20631 leucine-rich repeat containing G protein-coupled receptor 6 protein-coding 13-PTNLD9-TUMOR_peak_52402 chr8 144074821 144075054 + 16.15185 NA intron (NR_026913, intron 1 of 1) MER4E|LTR|ERV1 -2308 NR_102426 100128627 NR_102426 CDC42P3 - cell division cycle 42 pseudogene 3 pseudo 13-PTNLD9-TUMOR_peak_6667 chr10 23113996 23114219 + 16.15185 NA Intergenic Intergenic -102846 NM_001282746 219681 Hs.659807 NM_173081 HPRD:12487 ARMC3 CT81|KU-CT-1 armadillo repeat containing 3 protein-coding 13-PTNLD9-TUMOR_peak_42531 chr5 147286038 147286234 + 16.15185 NA promoter-TSS (NM_206966) promoter-TSS (NM_206966) -35 NM_206966 389336 Hs.660038 NM_206966 HPRD:14491 C5orf46 SSSP1 chromosome 5 open reading frame 46 protein-coding 13-PTNLD9-TUMOR_peak_39504 chr4 143012835 143013257 + 16.14486 NA intron (NM_001101669, intron 23 of 25) intron (NM_001101669, intron 23 of 25) 455297 NM_000585 3600 Hs.168132 NM_000585 HPRD:02776 IL15 IL-15 interleukin 15 protein-coding 13-PTNLD9-TUMOR_peak_47765 chr7 66459763 66459953 + 16.14319 NA intron (NM_016038, intron 1 of 4) intron (NM_016038, intron 1 of 4) 730 NM_016038 51119 Hs.110445 NM_016038 HPRD:07393 SBDS SDS|SWDS Shwachman-Bodian-Diamond syndrome protein-coding 13-PTNLD9-TUMOR_peak_12868 chr12 53321067 53321432 + 16.14080 NA promoter-TSS (NM_001256282) promoter-TSS (NM_001256282) -996 NM_001256282 3856 Hs.533782 NM_002273 HPRD:01015 KRT8 CARD2|CK-8|CK8|CYK8|K2C8|K8|KO keratin 8 protein-coding 13-PTNLD9-TUMOR_peak_10999 chr11 96076397 96076640 + 16.13717 NA promoter-TSS (NM_032427) promoter-TSS (NM_032427) -174 NM_032427 84441 Hs.428214 NM_032427 MAML2 MAM-3|MAM2|MAM3|MLL-MAML2 mastermind-like 2 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_36753 chr3 172375547 172375869 + 16.13717 NA intron (NM_020792, intron 1 of 4) MER63D|DNA|hAT-Blackjack 53300 NM_001146278 57552 Hs.444099 NM_020792 HPRD:07489 NCEH1 AADACL1|NCEH neutral cholesterol ester hydrolase 1 protein-coding 13-PTNLD9-TUMOR_peak_6537 chr10 14447034 14447477 + 16.13053 NA Intergenic Intergenic -31320 NR_031668 100302116 NR_031668 miRBase:MI0006401 MIR1265 MIRN1265|hsa-mir-1265 microRNA 1265 ncRNA 13-PTNLD9-TUMOR_peak_52129 chr8 133155371 133155918 + 16.13053 NA intron (NM_001204824, intron 9 of 14) intron (NM_001204824, intron 9 of 14) -38132 NM_001145095 10086 Hs.285026 NM_005712 HPRD:06823 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 13-PTNLD9-TUMOR_peak_35148 chr3 97690609 97691071 + 16.13053 NA 5' UTR (NM_001042533, exon 1 of 10) 5' UTR (NM_001042533, exon 1 of 10) 455 NM_001261829 84864 Hs.570562 NM_032778 HPRD:17575 MINA MDIG|MINA53|NO52|ROX MYC induced nuclear antigen protein-coding 13-PTNLD9-TUMOR_peak_52441 chr8 144635636 144636263 + 16.12847 NA intron (NM_001166237, intron 1 of 13) CpG 392 NM_001166237 79792 Hs.118983 NM_024736 HPRD:11014 GSDMD DF5L|DFNA5L|GSDMDC1 gasdermin D protein-coding 13-PTNLD9-TUMOR_peak_15888 chr14 58544885 58545168 + 16.12329 NA intron (NM_001001872, intron 5 of 7) L3|LINE|CR1 73821 NM_001001872 145407 Hs.535420 NM_001001872 C14orf37 c14_5376 chromosome 14 open reading frame 37 protein-coding 13-PTNLD9-TUMOR_peak_15175 chr13 114808964 114809208 + 16.12329 NA intron (NM_007368, intron 3 of 23) intron (NM_007368, intron 3 of 23) 89009 NM_007368 22821 Hs.593075 NM_007368 HPRD:05537 RASA3 GAP1IP4BP|GAPIII RAS p21 protein activator 3 protein-coding 13-PTNLD9-TUMOR_peak_38564 chr4 73075511 73075720 + 16.12329 NA Intergenic Intergenic 170766 NM_001144756 10886 Hs.99231 NM_004885 HPRD:16244 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 13-PTNLD9-TUMOR_peak_45796 chr6 100748462 100748665 + 16.12329 NA Intergenic MER21C|LTR|ERVL 162988 NM_005068 6492 Hs.520293 NM_005068 HPRD:07049 SIM1 bHLHe14 single-minded family bHLH transcription factor 1 protein-coding 13-PTNLD9-TUMOR_peak_24082 chr19 12917278 12917430 + 16.11758 NA promoter-TSS (NM_006397) promoter-TSS (NM_006397) -74 NM_006397 10535 Hs.532851 NM_006397 HPRD:06914 RNASEH2A AGS4|JUNB|RNASEHI|RNHIA|RNHL ribonuclease H2, subunit A protein-coding 13-PTNLD9-TUMOR_peak_25398 chr19 50193013 50193443 + 16.11758 NA intron (NM_001101340, intron 1 of 1) CpG -1137 NR_108072 126129 Hs.112195 NM_152359 HPRD:12315 CPT1C CATL1|CPT1-B|CPT1P|CPTI-B|CPTIC carnitine palmitoyltransferase 1C protein-coding 13-PTNLD9-TUMOR_peak_46942 chr7 17344661 17344926 + 16.11758 NA intron (NM_001621, intron 1 of 10) intron (NM_001621, intron 1 of 10) 6517 NM_001621 196 Hs.171189 NM_001621 HPRD:02596 AHR bHLHe76 aryl hydrocarbon receptor protein-coding 13-PTNLD9-TUMOR_peak_46837 chr7 6616990 6617295 + 16.11758 NA promoter-TSS (NM_001134389) promoter-TSS (NM_001134389) 77 NM_001134389 55146 Hs.5268 NM_018106 HPRD:15719 ZDHHC4 ZNF374 zinc finger, DHHC-type containing 4 protein-coding 13-PTNLD9-TUMOR_peak_7184 chr10 45356901 45357055 + 16.11758 NA intron (NR_033842, intron 2 of 7) intron (NR_033842, intron 2 of 7) -49786 NM_001123376 643236 Hs.292788 NM_001123376 TMEM72 C10orf127|KSP37|bA285G1.3 transmembrane protein 72 protein-coding 13-PTNLD9-TUMOR_peak_47414 chr7 46604944 46605233 + 16.11758 NA Intergenic Intergenic -644217 NM_001013398 3486 Hs.450230 NM_000598 HPRD:00899 IGFBP3 BP-53|IBP3 insulin-like growth factor binding protein 3 protein-coding 13-PTNLD9-TUMOR_peak_1475 chr1 43938229 43938674 + 16.11758 NA Intergenic LTR33|LTR|ERVL -18791 NM_001243526 81888 Hs.709864 NM_031207 HPRD:11039 HYI HT036 hydroxypyruvate isomerase (putative) protein-coding 13-PTNLD9-TUMOR_peak_49732 chr7 152917927 152918110 + 16.10931 NA Intergenic MER4C|LTR|ERV1 191301 NR_125776 103724390 Hs.614280 NR_125776 LINC01287 TCONS_l2_00027522 long intergenic non-protein coding RNA 1287 ncRNA 13-PTNLD9-TUMOR_peak_38995 chr4 103932702 103933151 + 16.10051 NA intron (NM_139173, intron 1 of 11) MLT1A1-int|LTR|ERVL-MaLR 7970 NR_047515 150159 Hs.666728 NM_139173 HPRD:11240 SLC9B1 NHA1|NHEDC1 solute carrier family 9, subfamily B (NHA1, cation proton antiporter 1), member 1 protein-coding 13-PTNLD9-TUMOR_peak_38649 chr4 77906168 77906336 + 16.10051 NA intron (NM_018243, intron 1 of 9) intron (NM_018243, intron 1 of 9) 35357 NM_018243 55752 Hs.128199 NM_018243 HPRD:08555 SEPT11 - septin 11 protein-coding 13-PTNLD9-TUMOR_peak_27083 chr2 65006462 65006786 + 16.10051 NA Intergenic Intergenic 84141 NR_110224 101927438 Hs.580313 NR_110224 LOC101927438 - uncharacterized LOC101927438 ncRNA 13-PTNLD9-TUMOR_peak_2933 chr1 114825559 114825682 + 16.10051 NA Intergenic Intergenic -129148 NM_001270805 148281 Hs.370963 NM_205848 HPRD:09654 SYT6 sytVI synaptotagmin VI protein-coding 13-PTNLD9-TUMOR_peak_8017 chr10 93412186 93412494 + 16.10051 NA Intergenic Intergenic -19482 NM_005398 5507 Hs.303090 NM_005398 HPRD:04298 PPP1R3C PPP1R5 protein phosphatase 1, regulatory subunit 3C protein-coding 13-PTNLD9-TUMOR_peak_29680 chr2 208421584 208421940 + 16.10051 NA intron (NM_004379, intron 2 of 7) AluSz|SINE|Alu 27146 NM_004379 1385 Hs.516646 NM_004379 HPRD:00442 CREB1 CREB cAMP responsive element binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_44939 chr6 39865551 39865740 + 16.10051 NA intron (NM_015345, intron 21 of 24) LTR43|LTR|ERV1 29810 NM_005943 4337 Hs.357128 NM_005942 HPRD:04749 MOCS1 MIG11|MOCOD|MOCODA molybdenum cofactor synthesis 1 protein-coding 13-PTNLD9-TUMOR_peak_5861 chr1 233249334 233249502 + 16.09770 NA intron (NM_014801, intron 21 of 33) intron (NM_014801, intron 21 of 33) 163048 NM_032324 84284 Hs.642715 NM_032324 NTPCR C1orf57|HCR-NTPase nucleoside-triphosphatase, cancer-related protein-coding 13-PTNLD9-TUMOR_peak_29137 chr2 174916534 174916736 + 16.09617 NA Intergenic Intergenic -86205 NM_003111 6670 Hs.531587 NM_003111 HPRD:03483 SP3 SPR2 Sp3 transcription factor protein-coding 13-PTNLD9-TUMOR_peak_11667 chr11 130455443 130455729 + 16.09617 NA Intergenic Intergenic -81044 NR_107019 102466873 NR_107019 MIR8052 hsa-mir-8052 microRNA 8052 ncRNA 13-PTNLD9-TUMOR_peak_19924 chr16 84096482 84096627 + 16.09617 NA intron (NM_003791, intron 19 of 22) intron (NM_003791, intron 19 of 22) -20792 NM_001080442 146167 NM_001080442 ENSG00000166558 SLC38A8 FVH2 solute carrier family 38, member 8 protein-coding 13-PTNLD9-TUMOR_peak_10664 chr11 75460113 75460258 + 16.09617 NA Intergenic L1PA2|LINE|L1 19507 NR_046090 283214 Hs.591972 NR_046090 ENSG00000247867 LOC283214 - uncharacterized LOC283214 ncRNA 13-PTNLD9-TUMOR_peak_44413 chr6 29758511 29758673 + 16.09617 NA TTS (NR_002139) TTS (NR_002139) -1091 NM_001207043 554223 Hs.60856 NM_001207043 LOC554223 - histocompatibility antigen-related protein-coding 13-PTNLD9-TUMOR_peak_25330 chr19 49285820 49285942 + 16.09617 NA Intergenic Intergenic 26537 NM_019113 26291 Hs.283015 NM_019113 HPRD:09447 FGF21 - fibroblast growth factor 21 protein-coding 13-PTNLD9-TUMOR_peak_11055 chr11 102177028 102177284 + 16.09617 NA Intergenic Intergenic -11025 NM_182962 330 Hs.127799 NM_001165 HPRD:03426 BIRC3 AIP1|API2|CIAP2|HAIP1|HIAP1|MALT2|MIHC|RNF49|c-IAP2 baculoviral IAP repeat containing 3 protein-coding 13-PTNLD9-TUMOR_peak_35747 chr3 126652957 126653228 + 16.09617 NA intron (NM_032343, intron 6 of 7) intron (NM_032343, intron 6 of 7) -54345 NM_032242 5361 Hs.432329 NM_032242 HPRD:11868 PLXNA1 NOV|NOVP|PLEXIN-A1|PLXN1 plexin A1 protein-coding 13-PTNLD9-TUMOR_peak_48000 chr7 75194590 75194808 + 16.07951 NA intron (NM_005338, intron 9 of 30) intron (NM_005338, intron 9 of 30) -37246 NR_028059 5387 Hs.659871 NM_005395 HPRD:17866 PMS2P3 PMS2L3|PMS2L9|PMS5|PMSR3 postmeiotic segregation increased 2 pseudogene 3 pseudo 13-PTNLD9-TUMOR_peak_14022 chr12 120632446 120632792 + 16.07951 NA promoter-TSS (NM_006836) promoter-TSS (NM_006836) -106 NM_006836 10985 Hs.298716 NM_006836 HPRD:16127 GCN1L1 GCN1|GCN1L|PRIC295 GCN1 general control of amino-acid synthesis 1-like 1 (yeast) protein-coding 13-PTNLD9-TUMOR_peak_44483 chr6 30786279 30786472 + 16.07951 NA Intergenic Intergenic -64015 NM_001297652 780 Hs.631988 NM_001954 HPRD:02678 DDR1 CAK|CD167|DDR|EDDR1|HGK2|MCK10|NEP|NTRK4|PTK3|PTK3A|RTK6|TRKE discoidin domain receptor tyrosine kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_14030 chr12 120675238 120675427 + 16.07800 NA intron (NM_001243756, intron 1 of 10) intron (NM_001243756, intron 1 of 10) 12632 NM_025157 5829 Hs.446336 NM_002859 ENSG00000089159 PXN - paxillin protein-coding 13-PTNLD9-TUMOR_peak_50385 chr8 26008915 26009186 + 16.07009 NA Intergenic Intergenic -106410 NM_022659 64641 Hs.491292 NM_022659 HPRD:16848 EBF2 COE2|EBF-2|O/E-3|OE-3 early B-cell factor 2 protein-coding 13-PTNLD9-TUMOR_peak_47939 chr7 73758207 73758398 + 16.07009 NA intron (NM_003388, intron 3 of 16) intron (NM_003388, intron 3 of 16) 54497 NM_003388 7461 Hs.647018 NM_003388 HPRD:09140 CLIP2 CLIP|CLIP-115|CYLN2|WBSCR3|WBSCR4|WSCR3|WSCR4 CAP-GLY domain containing linker protein 2 protein-coding 13-PTNLD9-TUMOR_peak_7889 chr10 82258629 82258848 + 16.06518 NA intron (NM_001128309, intron 2 of 5) intron (NM_001128309, intron 2 of 5) -32268 NR_120662 102723703 Hs.308615 NR_120662 LOC102723703 - uncharacterized LOC102723703 ncRNA 13-PTNLD9-TUMOR_peak_10676 chr11 75977403 75977954 + 16.06518 NA Intergenic Intergenic -60104 NM_004626 7481 Hs.108219 NM_004626 HPRD:04741 WNT11 HWNT11 wingless-type MMTV integration site family, member 11 protein-coding 13-PTNLD9-TUMOR_peak_1626 chr1 46859911 46860418 + 16.06518 NA exon (NM_001441, exon 1 of 15) exon (NM_001441, exon 1 of 15) 225 NM_001441 2166 Hs.720143 NM_001441 HPRD:04244 FAAH FAAH-1|PSAB fatty acid amide hydrolase protein-coding 13-PTNLD9-TUMOR_peak_50272 chr8 22085249 22085506 + 16.06518 NA intron (NM_014759, intron 2 of 4) intron (NM_014759, intron 2 of 4) 4474 NM_001099335 9796 Hs.334688 NM_014759 HPRD:16345 PHYHIP DYRK1AP3|PAHX-AP|PAHXAP1 phytanoyl-CoA 2-hydroxylase interacting protein protein-coding 13-PTNLD9-TUMOR_peak_7921 chr10 87402559 87402896 + 16.06518 NA intron (NM_017551, intron 13 of 15) intron (NM_017551, intron 13 of 15) 65239 NR_038986 100507470 Hs.585483 NR_038986 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_17650 chr15 74689400 74689619 + 16.06277 NA Intergenic Intergenic 14264 NR_106941 102465530 NR_106941 MIR6881 hsa-mir-6881 microRNA 6881 ncRNA 13-PTNLD9-TUMOR_peak_15251 chr14 21131263 21131646 + 16.06277 NA Intergenic Intergenic -20882 NM_001145 283 Hs.283749 NM_001145 HPRD:00105 ANG ALS9|HEL168|RAA1|RNASE4|RNASE5 angiogenin, ribonuclease, RNase A family, 5 protein-coding 13-PTNLD9-TUMOR_peak_903 chr1 30278602 30278806 + 16.06277 NA Intergenic Intergenic 231755 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LOC101929406 - uncharacterized LOC101929406 ncRNA 13-PTNLD9-TUMOR_peak_23442 chr18 70639229 70639364 + 16.06277 NA Intergenic L1HS|LINE|L1 -104486 NM_001201465 81832 Hs.465407 NM_138966 HPRD:16264 NETO1 BCTL1|BTCL1 neuropilin (NRP) and tolloid (TLL)-like 1 protein-coding 13-PTNLD9-TUMOR_peak_12628 chr12 45827389 45827651 + 16.06277 NA intron (NM_001142679, intron 19 of 19) intron (NM_001142679, intron 19 of 19) 141054 NM_001142678 196527 Hs.505339 NM_001025356 HPRD:18746 ANO6 BDPLT7|SCTS|TMEM16F anoctamin 6 protein-coding 13-PTNLD9-TUMOR_peak_52289 chr8 140718005 140718340 + 16.06270 NA Intergenic CpG-26022 -2873 NM_001282534 51305 Hs.493037 NM_001282534 HPRD:16167 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium channel, subfamily K, member 9 protein-coding 13-PTNLD9-TUMOR_peak_37418 chr3 195870048 195870243 + 16.06270 NA intron (NR_034088, intron 1 of 2) MIR3|SINE|MIR 638 NR_034088 401109 Hs.280133 NM_001001699 HPRD:16924 LINC00885 - long intergenic non-protein coding RNA 885 ncRNA 13-PTNLD9-TUMOR_peak_53178 chr9 37415036 37415268 + 16.05729 NA Intergenic L2b|LINE|L2 -7555 NM_012203 9380 Hs.155742 NM_012203 HPRD:05052 GRHPR GLXR|GLYD|PH2 glyoxylate reductase/hydroxypyruvate reductase protein-coding 13-PTNLD9-TUMOR_peak_23986 chr19 11248648 11249033 + 16.05260 NA Intergenic Intergenic 17644 NM_182513 147841 Hs.381225 NM_182513 SPC24 SPBC24 SPC24, NDC80 kinetochore complex component protein-coding 13-PTNLD9-TUMOR_peak_16735 chr15 20466717 20466854 + 16.05207 NA Intergenic Intergenic -21212 NR_038836 646096 Hs.448789 NR_038836 CHEK2P2 - checkpoint kinase 2 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_27252 chr2 72176121 72176345 + 16.04836 NA Intergenic Intergenic 198758 NM_001277742 56603 Hs.91546 NM_019885 HPRD:05550 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450, family 26, subfamily B, polypeptide 1 protein-coding 13-PTNLD9-TUMOR_peak_13599 chr12 102513757 102514138 + 16.04836 NA promoter-TSS (NM_017915) promoter-TSS (NM_017915) -9 NM_017915 55010 Hs.330663 NM_017915 HPRD:07937 PARPBP AROM|C12orf48|PARI PARP1 binding protein protein-coding 13-PTNLD9-TUMOR_peak_21888 chr17 69629684 69629994 + 16.04836 NA Intergenic Intergenic 392281 NR_110876 102723505 Hs.547482 NR_110876 LOC102723505 - uncharacterized LOC102723505 ncRNA 13-PTNLD9-TUMOR_peak_45450 chr6 70445066 70445250 + 16.04836 NA intron (NM_018368, intron 7 of 15) MER6|DNA|TcMar-Tigger 61891 NM_018368 55788 Hs.271643 NM_018368 HPRD:12877 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_45582 chr6 81148564 81148726 + 16.04836 NA Intergenic MLT1J2|LTR|ERVL-MaLR 332301 NM_183050 594 Hs.654441 NM_000056 HPRD:02011 BCKDHB E1B|dJ279A18.1 branched chain keto acid dehydrogenase E1, beta polypeptide protein-coding 13-PTNLD9-TUMOR_peak_46882 chr7 9244235 9244444 + 16.04836 NA Intergenic Intergenic -429561 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian clock 3 pseudogene pseudo 13-PTNLD9-TUMOR_peak_14669 chr13 43294636 43294878 + 16.04836 NA Intergenic Intergenic -60929 NM_182508 144809 Hs.16970 NM_182508 HPRD:08289 FAM216B C13orf30 family with sequence similarity 216, member B protein-coding 13-PTNLD9-TUMOR_peak_27783 chr2 98950988 98951161 + 16.04836 NA Intergenic Intergenic -11544 NM_001079878 1261 Hs.234785 NM_001298 HPRD:02504 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 13-PTNLD9-TUMOR_peak_29494 chr2 201024166 201024357 + 16.04836 NA Intergenic Intergenic -146343 NM_015535 26010 Hs.120323 NM_015535 HPRD:10916 SPATS2L DNAPTP6|SGNP spermatogenesis associated, serine-rich 2-like protein-coding 13-PTNLD9-TUMOR_peak_27483 chr2 86718348 86718509 + 16.04836 NA intron (NM_001146688, intron 25 of 25) intron (NM_001146688, intron 25 of 25) 49844 NM_001146688 55818 Hs.557425 NM_018433 HPRD:11054 KDM3A JHDM2A|JHMD2A|JMJD1|JMJD1A|TSGA lysine (K)-specific demethylase 3A protein-coding 13-PTNLD9-TUMOR_peak_6855 chr10 31390110 31390266 + 16.04836 NA Intergenic Intergenic -69322 NM_001143767 220929 Hs.660642 NM_182755 HPRD:11247 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 13-PTNLD9-TUMOR_peak_15434 chr14 30740007 30740279 + 16.04836 NA Intergenic Intergenic -288186 NM_017769 55632 Hs.509008 NM_017769 HPRD:13851 G2E3 KIAA1333|PHF7B G2/M-phase specific E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_6624 chr10 20565190 20565377 + 16.04836 NA intron (NM_001282736, intron 12 of 12) intron (NM_001282736, intron 12 of 12) -275616 NR_039822 100616383 NR_039822 miRBase:MI0017306 MIR4675 - microRNA 4675 ncRNA 13-PTNLD9-TUMOR_peak_14655 chr13 42178175 42178315 + 16.04836 NA intron (NM_015058, intron 40 of 44) intron (NM_015058, intron 40 of 44) -35714 NR_049803 100847026 NR_049803 MIR5006 - microRNA 5006 ncRNA 13-PTNLD9-TUMOR_peak_12358 chr12 26676703 26676947 + 16.04836 NA intron (NM_002223, intron 37 of 56) intron (NM_002223, intron 37 of 56) 309306 NM_002223 3709 Hs.512235 NM_002223 HPRD:02536 ITPR2 CFAP48|IP3R2 inositol 1,4,5-trisphosphate receptor, type 2 protein-coding 13-PTNLD9-TUMOR_peak_10974 chr11 95569128 95569432 + 16.04836 NA intron (NM_016156, intron 14 of 14) intron (NM_016156, intron 14 of 14) 45655 NM_001243777 9702 Hs.101014 NM_014679 HPRD:16261 CEP57 MVA2|PIG8|TSP57 centrosomal protein 57kDa protein-coding 13-PTNLD9-TUMOR_peak_926 chr1 31289524 31289752 + 16.04836 NA Intergenic MIRb|SINE|MIR -58955 NM_006762 7805 Hs.371021 NM_006762 HPRD:03280 LAPTM5 CLAST6 lysosomal protein transmembrane 5 protein-coding 13-PTNLD9-TUMOR_peak_2954 chr1 115711421 115711644 + 16.04836 NA Intergenic Intergenic -79411 NM_005725 10100 Hs.310458 NM_005725 HPRD:18233 TSPAN2 NET3|TSN2|TSPAN-2 tetraspanin 2 protein-coding 13-PTNLD9-TUMOR_peak_41860 chr5 121499630 121499799 + 16.04836 NA intron (NM_001195535, intron 1 of 2) intron (NM_001195535, intron 1 of 2) 3843 NM_001195535 100505841 Hs.733368 NM_001195535 LOC100505841 - zinc finger protein 474-like protein-coding 13-PTNLD9-TUMOR_peak_47322 chr7 43593685 43593875 + 16.04836 NA intron (NM_015052, intron 28 of 29) intron (NM_015052, intron 28 of 29) -28912 NM_004760 9263 Hs.709489 NM_004760 HPRD:05288 STK17A DRAK1 serine/threonine kinase 17a protein-coding 13-PTNLD9-TUMOR_peak_16602 chr14 102495237 102495408 + 16.04836 NA intron (NM_001376, intron 48 of 77) intron (NM_001376, intron 48 of 77) 58190 NM_005348 3320 Hs.525600 NM_005348 HPRD:00777 HSP90AA1 EL52|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp89|Hsp90|LAP-2|LAP2 heat shock protein 90kDa alpha (cytosolic), class A member 1 protein-coding 13-PTNLD9-TUMOR_peak_39173 chr4 119771735 119771910 + 16.04836 NA promoter-TSS (NM_001286754) promoter-TSS (NM_001286754) -21 NM_001286754 171024 Hs.655519 NM_133477 HPRD:15456 SYNPO2 - synaptopodin 2 protein-coding 13-PTNLD9-TUMOR_peak_39733 chr4 157870735 157870859 + 16.04836 NA intron (NR_036641, intron 1 of 6) intron (NR_036641, intron 1 of 6) 21749 NM_016205 56034 Hs.570855 NM_016205 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 13-PTNLD9-TUMOR_peak_44914 chr6 39153092 39153391 + 16.04836 NA Intergenic Intergenic 44010 NM_003740 8645 Hs.444448 NM_003740 HPRD:04604 KCNK5 K2p5.1|TASK-2|TASK2 potassium channel, subfamily K, member 5 protein-coding 13-PTNLD9-TUMOR_peak_29896 chr2 222861970 222862152 + 16.04836 NA Intergenic Intergenic -300805 NM_153038 151278 Hs.350729 NM_153038 HPRD:08132 CCDC140 - coiled-coil domain containing 140 protein-coding 13-PTNLD9-TUMOR_peak_32420 chr21 43648113 43648422 + 16.04836 NA intron (NM_207628, intron 4 of 16) intron (NM_207628, intron 4 of 16) 8259 NM_207174 9619 Hs.124649 NM_004915 HPRD:04355 ABCG1 ABC8|WHITE1 ATP-binding cassette, sub-family G (WHITE), member 1 protein-coding 13-PTNLD9-TUMOR_peak_30416 chr20 10935143 10935349 + 16.04836 NA Intergenic Intergenic -45326 NR_109866 101929413 Hs.385604 NR_109866 ENSG00000232900 LOC101929413 - uncharacterized LOC101929413 ncRNA 13-PTNLD9-TUMOR_peak_55508 chrX 8159042 8159451 + 16.04836 NA Intergenic Intergenic -19938 NM_016378 51480 Hs.279737 NM_016378 HPRD:06749 VCX2 VCX-2r|VCX2R|VCXB variable charge, X-linked 2 protein-coding 13-PTNLD9-TUMOR_peak_13375 chr12 76347876 76348104 + 16.04836 NA Intergenic Intergenic 77566 NM_007350 22822 Hs.602085 NM_007350 PHLDA1 DT1P1B11|PHRIP|TDAG51 pleckstrin homology-like domain, family A, member 1 protein-coding 13-PTNLD9-TUMOR_peak_6337 chr10 4583561 4583799 + 16.04836 NA Intergenic MLT1H2|LTR|ERVL-MaLR -114668 NR_015425 338588 Hs.121365 NR_015425 LINC00705 - long intergenic non-protein coding RNA 705 ncRNA 13-PTNLD9-TUMOR_peak_43574 chr6 4271152 4271257 + 16.04836 NA Intergenic Intergenic 134898 NR_103764 100507506 Hs.665936 NR_103764 ENSG00000234817 LOC100507506 - uncharacterized LOC100507506 ncRNA 13-PTNLD9-TUMOR_peak_9581 chr11 38040926 38041285 + 16.04836 NA Intergenic L1PA13|LINE|L1 626801 NR_120555 103312105 Hs.641711 NR_120554 LOC103312105 - uncharacterized LOC103312105 ncRNA 13-PTNLD9-TUMOR_peak_41263 chr5 73213296 73213460 + 16.04836 NA intron (NM_001244364, intron 27 of 27) intron (NM_001244364, intron 27 of 27) 104035 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor (GEF) 28 protein-coding 13-PTNLD9-TUMOR_peak_51522 chr8 105038130 105038309 + 16.04836 NA intron (NM_001100117, intron 19 of 23) Tigger3a|DNA|TcMar-Tigger -197344 NM_001282882 9699 Hs.655271 NM_014677 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 13-PTNLD9-TUMOR_peak_54725 chr9 125753807 125754010 + 16.04836 NA intron (NM_012197, intron 6 of 25) AluJr|SINE|Alu -42014 NM_005294 2844 Hs.722039 NM_005294 GPR21 - G protein-coupled receptor 21 protein-coding 13-PTNLD9-TUMOR_peak_985 chr1 32608471 32608635 + 16.04836 NA intron (NM_012316, intron 1 of 13) intron (NM_012316, intron 1 of 13) 34909 NM_012316 23633 Hs.470588 NM_012316 HPRD:09465 KPNA6 IPOA7|KPNA7 karyopherin alpha 6 (importin alpha 7) protein-coding 13-PTNLD9-TUMOR_peak_46048 chr6 129639586 129639841 + 16.04836 NA intron (NM_001079823, intron 27 of 63) intron (NM_001079823, intron 27 of 63) 391657 NM_033515 93663 Hs.486458 NM_033515 HPRD:12474 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 13-PTNLD9-TUMOR_peak_12265 chr12 18473101 18473231 + 16.04836 NA intron (NM_001288774, intron 6 of 32) intron (NM_001288774, intron 6 of 32) 58692 NM_004570 5288 Hs.22500 NM_004570 HPRD:16416 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma protein-coding 13-PTNLD9-TUMOR_peak_53648 chr9 75886082 75886218 + 16.04836 NA Intergenic Intergenic 119369 NM_000700 301 Hs.494173 NM_000700 HPRD:01060 ANXA1 ANX1|LPC1 annexin A1 protein-coding 13-PTNLD9-TUMOR_peak_18563 chr16 14144608 14144940 + 16.04836 NA Intergenic LTR85a|LTR|Gypsy? -20422 NM_014048 57496 Hs.49143 NM_014048 HPRD:17577 MKL2 MRTF-B|MRTFB|NPD001 MKL/myocardin-like 2 protein-coding 13-PTNLD9-TUMOR_peak_9318 chr11 22532391 22532659 + 16.04836 NA Intergenic L2c|LINE|L2 -18960 NR_120583 102723378 Hs.374255 NR_120583 LINC01495 - long intergenic non-protein coding RNA 1495 ncRNA 13-PTNLD9-TUMOR_peak_43922 chr6 15764182 15764376 + 16.04836 NA Intergenic Intergenic -100990 NM_001271669 84062 Hs.571148 NM_032122 HPRD:06190 DTNBP1 BLOC1S8|DBND|HPS7|My031|SDY dystrobrevin binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_13668 chr12 105557855 105558069 + 16.04836 NA exon (NM_015275, exon 31 of 33) exon (NM_015275, exon 31 of 33) 56470 NM_001293640 23325 Hs.12144 NM_015275 HPRD:13829 KIAA1033 MRT43|SWIP KIAA1033 protein-coding 13-PTNLD9-TUMOR_peak_9155 chr11 14037266 14037426 + 16.04836 NA intron (NM_006108, intron 2 of 15) intron (NM_006108, intron 2 of 15) 53162 NM_006108 10418 Hs.643864 NM_006108 SPON1 VSGP/F-spondin|f-spondin spondin 1, extracellular matrix protein protein-coding 13-PTNLD9-TUMOR_peak_22806 chr18 22140668 22140973 + 16.04836 NA Intergenic Intergenic -67326 NR_040033 729950 Hs.585850 NR_040033 ENSG00000265485 LOC729950 - uncharacterized LOC729950 ncRNA 13-PTNLD9-TUMOR_peak_29121 chr2 174523201 174523339 + 16.04836 NA Intergenic Intergenic 303709 NM_145810 83879 Hs.470654 NM_031942 HPRD:09874 CDCA7 JPO1 cell division cycle associated 7 protein-coding 13-PTNLD9-TUMOR_peak_37121 chr3 187559536 187559773 + 16.04836 NA Intergenic Intergenic -96141 NM_001706 604 Hs.478588 NM_001706 HPRD:00180 BCL6 BCL5|BCL6A|LAZ3|ZBTB27|ZNF51 B-cell CLL/lymphoma 6 protein-coding 13-PTNLD9-TUMOR_peak_38070 chr4 20522600 20522733 + 16.04836 NA intron (NM_001289135, intron 12 of 35) intron (NM_001289135, intron 12 of 35) -7232 NR_029631 407000 NR_029631 MIR218-1 MIRN218-1|mir-218-1 microRNA 218-1 ncRNA 13-PTNLD9-TUMOR_peak_1954 chr1 59388108 59388338 + 16.04836 NA Intergenic Intergenic -97925 NR_110626 101926925 NR_110626 LINC01358 - long intergenic non-protein coding RNA 1358 ncRNA 13-PTNLD9-TUMOR_peak_17351 chr15 58638667 58638848 + 16.04836 NA Intergenic Intergenic -85418 NM_000236 3990 Hs.654472 NM_000236 HPRD:01058 LIPC HDLCQ12|HL|HTGL|LIPH lipase, hepatic protein-coding 13-PTNLD9-TUMOR_peak_17328 chr15 56083778 56083956 + 16.04836 NA Intergenic MLT1A1|LTR|ERVL-MaLR -48690 NM_173814 283659 Hs.130957 NM_173814 HPRD:18765 PRTG IGDCC5 protogenin protein-coding 13-PTNLD9-TUMOR_peak_42724 chr5 153594161 153594302 + 16.04836 NA intron (NM_198321, intron 1 of 11) intron (NM_198321, intron 1 of 11) 23936 NM_198321 55568 Hs.631797 NM_017540 HPRD:12157 GALNT10 GALNACT10|PPGALNACT10|PPGANTASE10 polypeptide N-acetylgalactosaminyltransferase 10 protein-coding 13-PTNLD9-TUMOR_peak_52885 chr9 21070140 21070347 + 16.04836 NA Intergenic Intergenic 7700 NM_002176 3456 Hs.93177 NM_002176 HPRD:00972 IFNB1 IFB|IFF|IFNB interferon, beta 1, fibroblast protein-coding 13-PTNLD9-TUMOR_peak_44021 chr6 18978728 18978848 + 16.04836 NA Intergenic Intergenic 201923 NR_110860 101928519 Hs.551771 NR_110860 LOC101928519 - uncharacterized LOC101928519 ncRNA 13-PTNLD9-TUMOR_peak_45467 chr6 71555973 71556431 + 16.04836 NA intron (NM_001044305, intron 7 of 10) intron (NM_001044305, intron 7 of 10) 110586 NM_080742 135152 Hs.713609 NM_080742 B3GAT2 GLCATS beta-1,3-glucuronyltransferase 2 protein-coding 13-PTNLD9-TUMOR_peak_33427 chr22 46022329 46022558 + 16.04836 NA Intergenic Intergenic -45235 NM_001167621 25814 Hs.475125 NM_013236 HPRD:04624 ATXN10 E46L|HUMEEP|SCA10 ataxin 10 protein-coding 13-PTNLD9-TUMOR_peak_46421 chr6 158909184 158909384 + 16.04836 NA intron (NM_001007466, intron 8 of 12) intron (NM_001007466, intron 8 of 12) -48184 NM_020823 57583 Hs.99145 NM_020823 ENSG00000146433 TMEM181 GPR178|KIAA1423 transmembrane protein 181 protein-coding 13-PTNLD9-TUMOR_peak_30296 chr20 2644836 2645010 + 16.04836 NA promoter-TSS (NM_001258384) promoter-TSS (NM_001258384) -58 NM_006899 3420 Hs.436405 NM_006899 HPRD:05163 IDH3B H-IDHB|RP46 isocitrate dehydrogenase 3 (NAD+) beta protein-coding 13-PTNLD9-TUMOR_peak_34469 chr3 47803808 47804012 + 16.04836 NA intron (NM_003074, intron 2 of 27) intron (NM_003074, intron 2 of 27) 19495 NM_003074 6599 Hs.476179 NM_003074 HPRD:03435 SMARCC1 BAF155|CRACC1|Rsc8|SRG3|SWI3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 protein-coding 13-PTNLD9-TUMOR_peak_34362 chr3 43496698 43496940 + 16.04836 NA intron (NM_018075, intron 11 of 12) L2a|LINE|L2 -103365 NR_046757 100873954 Hs.600984 NR_046757 SNRK-AS1 - SNRK antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_6335 chr10 4386703 4387071 + 16.04836 NA Intergenic Intergenic -39551 NR_108055 100507059 Hs.158438 NR_108054 LINC00703 - long intergenic non-protein coding RNA 703 ncRNA 13-PTNLD9-TUMOR_peak_46465 chr6 161459529 161459802 + 16.04836 NA intron (NM_006724, intron 2 of 25) MLT1G|LTR|ERVL-MaLR 46906 NM_001301072 4216 Hs.390428 NM_005922 HPRD:03886 MAP3K4 MAPKKK4|MEKK 4|MEKK4|MTK1|PRO0412 mitogen-activated protein kinase kinase kinase 4 protein-coding 13-PTNLD9-TUMOR_peak_46051 chr6 130005225 130005364 + 16.04836 NA intron (NM_033515, intron 1 of 14) intron (NM_033515, intron 1 of 14) 26076 NM_033515 93663 Hs.486458 NM_033515 HPRD:12474 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 13-PTNLD9-TUMOR_peak_19750 chr16 74514132 74514305 + 16.04836 NA exon (NM_001145667, exon 11 of 26) exon (NM_001145667, exon 11 of 26) -58850 NM_001011880 497190 Hs.454670 NM_001011880 HPRD:17419 CLEC18B MRCL2 C-type lectin domain family 18, member B protein-coding 13-PTNLD9-TUMOR_peak_12348 chr12 26399490 26399635 + 16.04836 NA Intergenic Intergenic 51056 NM_005086 8082 Hs.183428 NM_005086 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 13-PTNLD9-TUMOR_peak_21890 chr17 69972245 69972419 + 16.04836 NA Intergenic Intergenic 49788 NR_110876 102723505 Hs.547482 NR_110876 LOC102723505 - uncharacterized LOC102723505 ncRNA 13-PTNLD9-TUMOR_peak_46345 chr6 152416444 152416628 + 16.04836 NA intron (NM_001291230, intron 8 of 8) MLT1K|LTR|ERVL-MaLR -285129 NR_120501 100505475 Hs.571203 NR_120501 SYNE1-AS1 - SYNE1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_52118 chr8 132724117 132724327 + 16.04836 NA Intergenic Intergenic -192134 NM_015137 23167 Hs.204564 NM_015137 HPRD:17179 EFR3A - EFR3 homolog A (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_45988 chr6 122147650 122147830 + 16.04836 NA Intergenic LTR16A|LTR|ERVL 391017 NM_000165 2697 Hs.74471 NM_000165 HPRD:00414 GJA1 AVSD3|CMDR|CX43|GJAL|HLHS1|HSS|ODDD gap junction protein, alpha 1, 43kDa protein-coding 13-PTNLD9-TUMOR_peak_45710 chr6 90085199 90085426 + 16.04836 NA intron (NM_021244, intron 5 of 6) intron (NM_021244, intron 5 of 6) -22693 NM_016021 51465 Hs.163776 NM_016021 HPRD:15599 UBE2J1 HSPC153|HSPC205|HSU93243|NCUBE-1|NCUBE1|UBC6|Ubc6p ubiquitin-conjugating enzyme E2, J1 protein-coding 13-PTNLD9-TUMOR_peak_19337 chr16 52237085 52237312 + 16.04836 NA Intergenic Intergenic 118005 NR_104655 102467079 Hs.98466 NR_104655 LOC102467079 - uncharacterized LOC102467079 ncRNA 13-PTNLD9-TUMOR_peak_53160 chr9 36470986 36471190 + 16.04836 NA Intergenic Intergenic -69893 NM_194330 152006 Hs.333503 NM_022781 HPRD:11519 RNF38 - ring finger protein 38 protein-coding 13-PTNLD9-TUMOR_peak_34855 chr3 65388390 65388584 + 16.04836 NA intron (NM_001033057, intron 12 of 22) intron (NM_001033057, intron 12 of 22) -491004 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_44950 chr6 40723122 40723263 + 16.04836 NA Intergenic Intergenic -168066 NM_020737 57497 Hs.250015 NM_020737 HPRD:17444 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_18553 chr16 13401235 13401478 + 16.04836 NA Intergenic Intergenic 405879 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 13-PTNLD9-TUMOR_peak_13242 chr12 68205338 68205472 + 16.04836 NA Intergenic MLT1J2|LTR|ERVL-MaLR -82150 NR_110063 101927901 Hs.369609 NR_110063 ENSG00000255970 LOC101927901 - uncharacterized LOC101927901 ncRNA 13-PTNLD9-TUMOR_peak_33533 chr3 306403 306628 + 16.04836 NA intron (NM_001253387, intron 2 of 26) intron (NM_001253387, intron 2 of 26) -54851 NM_001253388 10752 Hs.148909 NM_006614 HPRD:07598 CHL1 CALL|L1CAM2 cell adhesion molecule L1-like protein-coding 13-PTNLD9-TUMOR_peak_46164 chr6 140364569 140364762 + 16.04836 NA intron (NR_121623, intron 1 of 1) AmnSINE1|SINE|Deu -52267 NR_121624 103352541 Hs.582647 NR_121624 LOC103352541 - uncharacterized LOC103352541 ncRNA 13-PTNLD9-TUMOR_peak_14654 chr13 42139484 42139750 + 16.04836 NA Intergenic Intergenic 2914 NR_049803 100847026 NR_049803 MIR5006 - microRNA 5006 ncRNA 13-PTNLD9-TUMOR_peak_47783 chr7 67723667 67723828 + 16.04836 NA Intergenic Intergenic 238507 NR_120514 102723427 Hs.583491 NR_120514 LOC102723427 - uncharacterized LOC102723427 ncRNA 13-PTNLD9-TUMOR_peak_34097 chr3 24550008 24550144 + 16.04836 NA Intergenic Intergenic 12850 NR_039955 100616448 NR_039955 miRBase:MI0017439 MIR4792 miR-4792 microRNA 4792 ncRNA 13-PTNLD9-TUMOR_peak_8534 chr10 125823333 125823731 + 16.04836 NA intron (NM_001270765, intron 1 of 5) intron (NM_001270765, intron 1 of 5) 28408 NM_015892 51363 Hs.287537 NM_014863 HPRD:12203 CHST15 BRAG|GALNAC4S-6ST carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15 protein-coding 13-PTNLD9-TUMOR_peak_50566 chr8 32572759 32572992 + 16.04836 NA intron (NM_013959, intron 1 of 2) intron (NM_013959, intron 1 of 2) -6476 NM_001159996 3084 Hs.453951 NM_004495 HPRD:00802 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 13-PTNLD9-TUMOR_peak_50876 chr8 48565359 48565512 + 16.04836 NA intron (NM_001080394, intron 10 of 19) intron (NM_001080394, intron 10 of 19) 85291 NM_005195 1052 Hs.440829 NM_005195 CEBPD C/EBP-delta|CELF|CRP3|NF-IL6-beta CCAAT/enhancer binding protein (C/EBP), delta protein-coding 13-PTNLD9-TUMOR_peak_20836 chr17 30662780 30662932 + 16.04836 NA intron (NM_022344, intron 5 of 9) L2b|LINE|L2 6372 NM_022344 64149 Hs.655257 NM_022344 C17orf75 NJMU-R1 chromosome 17 open reading frame 75 protein-coding 13-PTNLD9-TUMOR_peak_1955 chr1 59398574 59398876 + 16.04836 NA Intergenic Intergenic -87423 NR_110626 101926925 NR_110626 LINC01358 - long intergenic non-protein coding RNA 1358 ncRNA 13-PTNLD9-TUMOR_peak_34647 chr3 52127851 52128077 + 16.04836 NA intron (NM_001161580, intron 9 of 9) intron (NM_001161580, intron 9 of 9) -28836 NR_027331 100128378 Hs.640106 NM_001123039 LINC00696 C3orf74 long intergenic non-protein coding RNA 696 ncRNA 13-PTNLD9-TUMOR_peak_11677 chr11 130607865 130608292 + 16.04239 NA Intergenic Intergenic 65227 NM_001271983 283171 Hs.376151 NM_001271983 HPRD:08250 C11orf44 - chromosome 11 open reading frame 44 protein-coding 13-PTNLD9-TUMOR_peak_37202 chr3 189949680 189950061 + 16.04239 NA Intergenic Intergenic 90365 NM_021101 9076 Hs.439060 NM_021101 HPRD:04760 CLDN1 CLD1|ILVASC|SEMP1 claudin 1 protein-coding 13-PTNLD9-TUMOR_peak_12356 chr12 26626261 26626440 + 16.04239 NA intron (NM_002223, intron 45 of 56) 7SK|RNA|RNA 277844 NM_005086 8082 Hs.183428 NM_005086 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 13-PTNLD9-TUMOR_peak_38795 chr4 86323638 86323899 + 16.04239 NA Intergenic Tigger10|DNA|TcMar-Tigger -72516 NM_001025616 83478 Hs.444229 NM_031305 HPRD:09804 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 13-PTNLD9-TUMOR_peak_53701 chr9 79483942 79484267 + 16.04239 NA intron (NM_015225, intron 1 of 18) intron (NM_015225, intron 1 of 18) 36899 NM_015225 158471 Hs.262857 NM_015225 HPRD:12970 PRUNE2 A214N16.3|BMCC1|BNIPXL|C9orf65|KIAA0367|bA214N16.3 prune homolog 2 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_1766 chr1 52035481 52035765 + 16.04239 NA Intergenic MIRb|SINE|MIR -46923 NM_148909 114883 Hs.21938 NM_024586 HPRD:09479 OSBPL9 ORP-9|ORP9 oxysterol binding protein-like 9 protein-coding 13-PTNLD9-TUMOR_peak_33698 chr3 9811559 9811763 + 16.03582 NA promoter-TSS (NM_003656) promoter-TSS (NM_003656) 7 NM_003656 8536 Hs.434875 NM_003656 HPRD:05412 CAMK1 CAMKI calcium/calmodulin-dependent protein kinase I protein-coding 13-PTNLD9-TUMOR_peak_46263 chr6 149638405 149638713 + 16.03582 NA promoter-TSS (NM_015093) promoter-TSS (NM_015093) -555 NM_001292034 23118 Hs.269775 NM_015093 HPRD:05483 TAB2 CHTD2|MAP3K7IP2|TAB-2 TGF-beta activated kinase 1/MAP3K7 binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_4081 chr1 160053955 160054113 + 16.03582 NA exon (NM_004983, exon 2 of 3) exon (NM_004983, exon 2 of 3) 2674 NM_004983 3765 Hs.66726 NM_004983 KCNJ9 GIRK3|KIR3.3 potassium inwardly-rectifying channel, subfamily J, member 9 protein-coding 13-PTNLD9-TUMOR_peak_52047 chr8 130214737 130214996 + 16.03582 NA Intergenic Intergenic 38620 NR_033916 728724 Hs.49902 NR_033916 ENSG00000250400 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 13-PTNLD9-TUMOR_peak_40063 chr4 187858252 187858495 + 16.03055 NA Intergenic Intergenic -213386 NM_005245 2195 Hs.481371 NM_005245 HPRD:02986 FAT1 CDHF7|CDHR8|FAT|ME5|hFat1 FAT atypical cadherin 1 protein-coding 13-PTNLD9-TUMOR_peak_32752 chr22 19879175 19879313 + 16.03055 NA intron (NM_006440, intron 11 of 17) intron (NM_006440, intron 11 of 17) -36782 NM_053004 54584 Hs.105642 NM_053004 HPRD:13591 GNB1L DGCRK3|GY2|WDR14|WDVCF guanine nucleotide binding protein (G protein), beta polypeptide 1-like protein-coding 13-PTNLD9-TUMOR_peak_15712 chr14 50511805 50512164 + 16.03055 NA Intergenic Intergenic -5382 NR_102736 100506499 Hs.728904 NR_102736 LOC100506499 - uncharacterized LOC100506499 ncRNA 13-PTNLD9-TUMOR_peak_37879 chr4 8257736 8258093 + 16.03055 NA Intergenic Intergenic -13578 NM_001297559 94031 Hs.479119 NM_053044 HPRD:08821 HTRA3 Prsp|Tasp HtrA serine peptidase 3 protein-coding 13-PTNLD9-TUMOR_peak_16227 chr14 73428364 73428643 + 16.02519 NA Intergenic Intergenic 25161 NM_178441 53349 Hs.335106 NM_021260 HPRD:12017 ZFYVE1 DFCP1|PPP1R172|SR3|TAFF1|ZNFN2A1 zinc finger, FYVE domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_12837 chr12 52829841 52830245 + 16.02519 NA Intergenic Intergenic -1933 NM_004693 9119 Hs.697046 NM_004693 HPRD:11057 KRT75 K6HF|KB18|PFB keratin 75 protein-coding 13-PTNLD9-TUMOR_peak_53564 chr9 72058109 72058445 + 16.02379 NA intron (NM_001163, intron 10 of 12) intron (NM_001163, intron 10 of 12) 114036 NM_004816 9413 Hs.118003 NM_004816 HPRD:16255 FAM189A2 C9orf61|X123 family with sequence similarity 189, member A2 protein-coding 13-PTNLD9-TUMOR_peak_55051 chr9 139795972 139796280 + 16.02379 NA intron (NM_021138, intron 4 of 10) intron (NM_021138, intron 4 of 10) 14941 NR_039697 100616480 NR_039697 MIR4479 - microRNA 4479 ncRNA 13-PTNLD9-TUMOR_peak_11950 chr12 6304964 6305276 + 16.02379 NA Intergenic Intergenic -4362 NM_001769 928 Hs.114286 NM_001769 HPRD:00880 CD9 BTCC-1|DRAP-27|MIC3|MRP-1|TSPAN-29|TSPAN29 CD9 molecule protein-coding 13-PTNLD9-TUMOR_peak_37349 chr3 194592262 194592574 + 16.02379 NA Intergenic Intergenic 163268 NR_037891 100507391 Hs.590099 NR_037891 ENSG00000237222 LOC100507391 - uncharacterized LOC100507391 ncRNA 13-PTNLD9-TUMOR_peak_26038 chr2 9319127 9319379 + 16.02379 NA Intergenic Intergenic -27641 NM_001135191 8853 Hs.555902 NM_003887 HPRD:04820 ASAP2 AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 protein-coding 13-PTNLD9-TUMOR_peak_1452 chr1 43739917 43740247 + 16.02094 NA TTS (NM_144626) TTS (NM_144626) 4417 NM_144626 128218 Hs.104476 NM_144626 HPRD:14457 TMEM125 - transmembrane protein 125 protein-coding 13-PTNLD9-TUMOR_peak_28280 chr2 121377717 121377899 + 16.01589 NA Intergenic ERVL-E-int|LTR|ERVL -153883 NR_027181 84931 Hs.334519 NM_032845 HPRD:08604 LINC01101 - long intergenic non-protein coding RNA 1101 ncRNA 13-PTNLD9-TUMOR_peak_43266 chr5 178094225 178094414 + 16.01589 NA Intergenic Intergenic -40265 NM_020666 57396 Hs.406557 NM_020666 HPRD:12140 CLK4 - CDC-like kinase 4 protein-coding 13-PTNLD9-TUMOR_peak_26404 chr2 27805745 27806139 + 16.01589 NA TTS (NM_032266) TTS (NM_032266) 106 NM_001271318 84450 Hs.529178 NM_032434 HPRD:10336 ZNF512 - zinc finger protein 512 protein-coding 13-PTNLD9-TUMOR_peak_7471 chr10 61883046 61883203 + 16.01589 NA intron (NM_001149, intron 3 of 20) intron (NM_001149, intron 3 of 20) 17650 NM_001149 288 Hs.499725 NM_001149 HPRD:02715 ANK3 ANKYRIN-G|MRT37 ankyrin 3, node of Ranvier (ankyrin G) protein-coding 13-PTNLD9-TUMOR_peak_41274 chr5 73537633 73537860 + 16.01589 NA Intergenic MER5A|DNA|hAT-Charlie 66404 NR_105009 102503429 Hs.519391 NR_105009 LINC01335 - long intergenic non-protein coding RNA 1335 ncRNA 13-PTNLD9-TUMOR_peak_1887 chr1 55776365 55776576 + 16.01589 NA Intergenic Intergenic 85156 NR_039618 100616272 NR_039618 miRBase:MI0016759 MIR4422 - microRNA 4422 ncRNA 13-PTNLD9-TUMOR_peak_21520 chr17 51799849 51800089 + 16.01589 NA Intergenic LTR57-int|LTR|ERVL -100270 NM_032559 84643 Hs.226805 NM_032559 HPRD:10053 KIF2B - kinesin family member 2B protein-coding 13-PTNLD9-TUMOR_peak_3267 chr1 145042859 145043215 + 16.00833 NA intron (NM_022359, intron 1 of 6) intron (NM_022359, intron 1 of 6) -3042 NM_001198832 9659 Hs.584841 NM_014644 HPRD:10482 PDE4DIP CMYA2|MMGL phosphodiesterase 4D interacting protein protein-coding 13-PTNLD9-TUMOR_peak_33122 chr22 31575387 31575625 + 16.00468 NA intron (NR_024212, intron 1 of 5) intron (NR_024212, intron 1 of 5) 19368 NM_152267 91445 Hs.517553 NM_152267 HPRD:08790 RNF185 - ring finger protein 185 protein-coding 13-PTNLD9-TUMOR_peak_49199 chr7 134451631 134451813 + 16.00468 NA Intergenic Intergenic -12442 NM_004342 800 Hs.490203 NM_004342 HPRD:00251 CALD1 CDM|H-CAD|HCAD|L-CAD|LCAD|NAG22 caldesmon 1 protein-coding 13-PTNLD9-TUMOR_peak_42746 chr5 154209581 154209780 + 16.00468 NA intron (NM_032385, intron 5 of 8) intron (NM_032385, intron 5 of 8) 20533 NM_032385 10826 Hs.519694 NM_016348 HPRD:12832 FAXDC2 C5orf4 fatty acid hydroxylase domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_36652 chr3 168720600 168720867 + 16.00468 NA Intergenic Intergenic 101000 NR_109989 100507661 Hs.65918 NR_109989 ENSG00000242268 LOC100507661 - uncharacterized LOC100507661 ncRNA 13-PTNLD9-TUMOR_peak_49680 chr7 151348232 151348447 + 16.00468 NA intron (NM_001040633, intron 4 of 15) Charlie1a|DNA|hAT-Charlie -18995 NM_024429 51422 Hs.647072 NM_016203 HPRD:04119 PRKAG2 AAKG|AAKG2|CMH6|H91620p|WPWS protein kinase, AMP-activated, gamma 2 non-catalytic subunit protein-coding 13-PTNLD9-TUMOR_peak_19500 chr16 61816122 61816263 + 16.00468 NA intron (NM_001796, intron 8 of 11) L1PA2|LINE|L1 254547 NM_001796 1006 Hs.368322 NM_001796 HPRD:04306 CDH8 Nbla04261 cadherin 8, type 2 protein-coding 13-PTNLD9-TUMOR_peak_36649 chr3 168439949 168440143 + 16.00468 NA intron (NR_021485, intron 6 of 15) MER74C|LTR|ERVL 170404 NR_030294 693136 NR_030294 miRBase:MI0003575 MIR551B MIRN551B microRNA 551b ncRNA 13-PTNLD9-TUMOR_peak_6541 chr10 14596216 14596432 + 15.98711 NA intron (NM_001282695, intron 2 of 5) intron (NM_001282695, intron 2 of 5) 17864 NM_001282699 83641 Hs.446315 NM_031453 HPRD:12575 FAM107B C10orf45 family with sequence similarity 107, member B protein-coding 13-PTNLD9-TUMOR_peak_52381 chr8 143475189 143475427 + 15.98711 NA intron (NM_001291931, intron 1 of 10) intron (NM_001291931, intron 1 of 10) 9302 NM_145003 203062 Hs.370931 NM_145003 HPRD:08708 TSNARE1 - t-SNARE domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_36564 chr3 159136800 159136991 + 15.98711 NA intron (NM_001197108, intron 1 of 6) intron (NM_001197108, intron 1 of 6) 136460 NR_037483 100500803 NR_037483 MIR3919 - microRNA 3919 ncRNA 13-PTNLD9-TUMOR_peak_22915 chr18 32915923 32916105 + 15.98711 NA 3' UTR (NM_006965, exon 4 of 4) 3' UTR (NM_006965, exon 4 of 4) 8412 NM_006965 7572 Hs.514802 NM_006965 HPRD:01921 ZNF24 KOX17|RSG-A|ZNF191|ZSCAN3|Zfp191 zinc finger protein 24 protein-coding 13-PTNLD9-TUMOR_peak_42549 chr5 148290349 148290599 + 15.98286 NA Intergenic L2c|LINE|L2 84318 NM_000024 154 Hs.2551 NM_000024 HPRD:00187 ADRB2 ADRB2R|ADRBR|B2AR|BAR|BETA2AR adrenoceptor beta 2, surface protein-coding 13-PTNLD9-TUMOR_peak_37395 chr3 195597528 195597655 + 15.98274 NA intron (NM_001010938, intron 10 of 14) intron (NM_001010938, intron 10 of 14) 11675 NR_106887 102465977 NR_106887 MIR6829 hsa-mir-6829 microRNA 6829 ncRNA 13-PTNLD9-TUMOR_peak_28930 chr2 163175094 163175615 + 15.98274 NA promoter-TSS (NM_022168) promoter-TSS (NM_022168) -136 NM_022168 64135 Hs.163173 NM_022168 HPRD:09507 IFIH1 AGS7|Hlcd|IDDM19|MDA-5|MDA5|RLR-2 interferon induced with helicase C domain 1 protein-coding 13-PTNLD9-TUMOR_peak_40373 chr5 14157141 14157332 + 15.98017 NA intron (NM_007118, intron 1 of 56) intron (NM_007118, intron 1 of 56) 13407 NM_007118 7204 Hs.130031 NM_007118 HPRD:03537 TRIO ARHGEF23|tgat trio Rho guanine nucleotide exchange factor protein-coding 13-PTNLD9-TUMOR_peak_32118 chr21 32874889 32875349 + 15.98017 NA intron (NM_003253, intron 1 of 28) intron (NM_003253, intron 1 of 28) 56171 NM_003253 7074 Hs.517228 NM_003253 HPRD:02820 TIAM1 - T-cell lymphoma invasion and metastasis 1 protein-coding 13-PTNLD9-TUMOR_peak_5779 chr1 229927968 229928208 + 15.98017 NA Intergenic Intergenic 166107 NM_014777 9816 Hs.533628 NM_014777 HPRD:17178 URB2 KIAA0133|NET10|NPA2 URB2 ribosome biogenesis 2 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_52411 chr8 144124372 144124566 + 15.98017 NA exon (NM_173687, exon 2 of 6) exon (NM_173687, exon 2 of 6) 3790 NM_173687 286122 Hs.660382 NM_173687 HPRD:08781 C8orf31 - chromosome 8 open reading frame 31 protein-coding 13-PTNLD9-TUMOR_peak_43527 chr6 3382653 3382847 + 15.98017 NA intron (NR_104448, intron 3 of 11) intron (NR_104448, intron 3 of 11) 62497 NR_104448 63027 Hs.713588 NM_015482 HPRD:12904 SLC22A23 C6orf85 solute carrier family 22, member 23 protein-coding 13-PTNLD9-TUMOR_peak_36550 chr3 158427455 158427841 + 15.97913 NA intron (NM_206963, intron 3 of 5) intron (NM_206963, intron 3 of 5) 22627 NM_002888 5918 Hs.131269 NM_002888 HPRD:05477 RARRES1 LXNL|TIG1 retinoic acid receptor responder (tazarotene induced) 1 protein-coding 13-PTNLD9-TUMOR_peak_16112 chr14 68993254 68993436 + 15.97041 NA intron (NM_133509, intron 10 of 10) intron (NM_133509, intron 10 of 10) 267286 NM_004926 677 Hs.85155 NM_004926 HPRD:03041 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein-like 1 protein-coding 13-PTNLD9-TUMOR_peak_33031 chr22 27857480 27857784 + 15.97041 NA Intergenic Intergenic 339854 NM_002430 4330 Hs.268515 NM_002430 HPRD:08862 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 meningioma (disrupted in balanced translocation) 1 protein-coding 13-PTNLD9-TUMOR_peak_37 chr1 771023 771244 + 15.97041 NA intron (NR_047524, intron 2 of 3) intron (NR_047524, intron 2 of 3) 7955 NR_047525 643837 Hs.133183 NR_015368 ENSG00000228794 LINC01128 - long intergenic non-protein coding RNA 1128 ncRNA 13-PTNLD9-TUMOR_peak_23460 chr18 72458046 72458275 + 15.97041 NA intron (NM_017757, intron 2 of 7) Tigger3b|DNA|TcMar-Tigger 115241 NM_001146189 55628 Hs.536490 NM_017757 HPRD:11713 ZNF407 - zinc finger protein 407 protein-coding 13-PTNLD9-TUMOR_peak_10954 chr11 94817785 94817972 + 15.97041 NA Intergenic Intergenic -5096 NM_015036 23052 Hs.167115 NM_015036 ENSG00000149218 ENDOD1 - endonuclease domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_5063 chr1 203123275 203123831 + 15.96742 NA intron (NM_001048230, intron 2 of 2) LTR33A_|LTR|ERVL 21389 NM_004997 4608 Hs.927 NM_004997 HPRD:01186 MYBPH - myosin binding protein H protein-coding 13-PTNLD9-TUMOR_peak_3519 chr1 149823124 149823704 + 15.95083 NA promoter-TSS (NM_021059).2 promoter-TSS (NM_021059).2 -767 NM_021059 126961 Hs.647745 NM_021059 HIST2H3C H3|H3.2|H3/M|H3F2|H3FM|H3FN histone cluster 2, H3c protein-coding 13-PTNLD9-TUMOR_peak_19345 chr16 53132872 53133143 + 15.95072 NA intron (NM_025134, intron 1 of 38) intron (NM_025134, intron 1 of 38) 44062 NM_025134 80205 Hs.59159 NM_025134 HPRD:08570 CHD9 AD013|CReMM|KISH2|PRIC320 chromodomain helicase DNA binding protein 9 protein-coding 13-PTNLD9-TUMOR_peak_49381 chr7 140241374 140241763 + 15.94710 NA intron (NM_015689, intron 12 of 17) intron (NM_015689, intron 12 of 17) 60774 NM_015689 27147 Hs.6385 NM_015689 HPRD:17210 DENND2A FAM31D|KIAA1277 DENN/MADD domain containing 2A protein-coding 13-PTNLD9-TUMOR_peak_28031 chr2 111230406 111230771 + 15.94680 NA promoter-TSS (NR_027145) promoter-TSS (NR_027145) 64 NR_027467 96626 Hs.535619 NM_033514 HPRD:17277 LIMS3 PINCH-3 LIM and senescent cell antigen-like domains 3 protein-coding 13-PTNLD9-TUMOR_peak_13754 chr12 109034087 109034221 + 15.94451 NA Intergenic MLT2B4|LTR|ERVL -6484 NM_003006 6404 Hs.591014 NM_003006 HPRD:02845 SELPLG CD162|CLA|PSGL-1|PSGL1 selectin P ligand protein-coding 13-PTNLD9-TUMOR_peak_42470 chr5 144558319 144558516 + 15.94451 NA Intergenic Intergenic 656515 NM_138492 153768 Hs.314261 NM_138492 HPRD:14479 PRELID2 - PRELI domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_44640 chr6 32908711 32908946 + 15.94228 NA promoter-TSS (NM_002118) promoter-TSS (NM_002118) 19 NM_002118 3109 Hs.351279 NM_002118 HPRD:00831 HLA-DMB D6S221E|RING7 major histocompatibility complex, class II, DM beta protein-coding 13-PTNLD9-TUMOR_peak_11191 chr11 111457377 111457567 + 15.94228 NA Intergenic Intergenic -15698 NM_015191 23235 Hs.269128 NM_015191 SIK2 LOH11CR1I|QIK|SNF1LK2 salt-inducible kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_46090 chr6 134700270 134700569 + 15.94228 NA Intergenic MER51A|LTR|ERV1 -58435 NR_038216 154092 Hs.223718 NR_038216 LINC01010 - long intergenic non-protein coding RNA 1010 ncRNA 13-PTNLD9-TUMOR_peak_11076 chr11 103571360 103571525 + 15.94228 NA Intergenic L2b|LINE|L2 -149192 NR_039842 100616457 NR_039842 miRBase:MI0017326 MIR4693 - microRNA 4693 ncRNA 13-PTNLD9-TUMOR_peak_15382 chr14 24721112 24721302 + 15.94228 NA intron (NM_000359, intron 14 of 14) MARNA|DNA|TcMar-Mariner -9327 NM_012461 26277 Hs.496191 NM_012461 HPRD:16056 TINF2 DKCA3|TIN2 TERF1 (TRF1)-interacting nuclear factor 2 protein-coding 13-PTNLD9-TUMOR_peak_1482 chr1 44007826 44008007 + 15.93669 NA intron (NM_130440, intron 2 of 32) intron (NM_130440, intron 2 of 32) 11369 NM_130440 5792 Hs.272062 NM_002840 HPRD:01552 PTPRF LAR protein tyrosine phosphatase, receptor type, F protein-coding 13-PTNLD9-TUMOR_peak_32564 chr21 46549509 46549692 + 15.93317 NA intron (NR_027674, intron 2 of 11) intron (NR_027674, intron 2 of 11) 55107 NM_015834 104 Hs.474018 NM_001112 HPRD:06777 ADARB1 ADAR2|DRABA2|DRADA2|RED1 adenosine deaminase, RNA-specific, B1 protein-coding 13-PTNLD9-TUMOR_peak_50621 chr8 37727784 37727958 + 15.93317 NA intron (NM_001002814, intron 5 of 5) intron (NM_001002814, intron 5 of 5) -20440 NM_018310 55290 Hs.709301 NM_018310 BRF2 BRFU|TFIIIB50 BRF2, RNA polymerase III transcription initiation factor 50 kDa subunit protein-coding 13-PTNLD9-TUMOR_peak_18598 chr16 15188057 15188312 + 15.93236 NA promoter-TSS (NR_125434) promoter-TSS (NR_125434) 8 NM_001301064 54700 Hs.460078 NM_018427 HPRD:12004 RRN3 A-270G1.2|TIFIA RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_33741 chr3 10593755 10594063 + 15.93052 NA Intergenic Intergenic -46641 NM_001683 491 Hs.268942 NM_001683 HPRD:00160 ATP2B2 PMCA2|PMCA2a|PMCA2i ATPase, Ca++ transporting, plasma membrane 2 protein-coding 13-PTNLD9-TUMOR_peak_14291 chr12 128597743 128598263 + 15.93052 NA intron (NR_104647, intron 2 of 4) intron (NR_104647, intron 2 of 4) 4683 NR_104647 100996679 Hs.539127 NR_104647 ENSG00000256551 LOC100996679 - uncharacterized LOC100996679 ncRNA 13-PTNLD9-TUMOR_peak_464 chr1 12870844 12871272 + 15.93052 NA Intergenic Intergenic 16215 NM_001294139 65121 Hs.454859 NM_023013 HPRD:11272 PRAMEF1 - PRAME family member 1 protein-coding 13-PTNLD9-TUMOR_peak_37900 chr4 8549239 8549410 + 15.93052 NA Intergenic LTR8|LTR|ERV1 -32640 NR_045511 27201 Hs.740355 NM_080819 GPR78 - G protein-coupled receptor 78 protein-coding 13-PTNLD9-TUMOR_peak_18301 chr16 3088355 3088566 + 15.93052 NA non-coding (NR_047572, exon 8 of 8) non-coding (NR_047572, exon 8 of 8) -2918 NM_001103175 146439 Hs.513285 NM_001103175 ENSG00000162069 CCDC64B BICDR-2 coiled-coil domain containing 64B protein-coding 13-PTNLD9-TUMOR_peak_5972 chr1 235752412 235752805 + 15.93052 NA intron (NM_004485, intron 1 of 2) LTR18B|LTR|ERVL 60685 NM_001098722 2786 Hs.159711 NM_004485 HPRD:11978 GNG4 - guanine nucleotide binding protein (G protein), gamma 4 protein-coding 13-PTNLD9-TUMOR_peak_6287 chr10 3087753 3088328 + 15.93052 NA Intergenic Intergenic -21672 NM_002627 5214 Hs.26010 NM_002627 HPRD:01384 PFKP ATP-PFK|PFK-C|PFK-P|PFKF phosphofructokinase, platelet protein-coding 13-PTNLD9-TUMOR_peak_27995 chr2 110655891 110656248 + 15.92751 NA promoter-TSS (NR_038099) promoter-TSS (NR_038099) 60 NM_033514 96626 Hs.535619 NM_033514 HPRD:17277 LIMS3 PINCH-3 LIM and senescent cell antigen-like domains 3 protein-coding 13-PTNLD9-TUMOR_peak_13992 chr12 118539881 118540246 + 15.90985 NA intron (NM_019086, intron 1 of 8) intron (NM_019086, intron 1 of 8) 1747 NM_019086 54621 Hs.187624 NM_019086 HPRD:07941 VSIG10 - V-set and immunoglobulin domain containing 10 protein-coding 13-PTNLD9-TUMOR_peak_34272 chr3 38183455 38183667 + 15.90985 NA 3' UTR (NM_001172567, exon 5 of 5) 3' UTR (NM_001172567, exon 5 of 5) 3592 NM_002468 4615 Hs.82116 NM_002468 HPRD:03703 MYD88 MYD88D myeloid differentiation primary response 88 protein-coding 13-PTNLD9-TUMOR_peak_27943 chr2 109029488 109029829 + 15.90467 NA Intergenic Intergenic 35237 NM_006588 27233 Hs.312644 NM_006588 HPRD:07461 SULT1C4 SULT1C|SULT1C2 sulfotransferase family, cytosolic, 1C, member 4 protein-coding 13-PTNLD9-TUMOR_peak_14631 chr13 40846991 40847191 + 15.90467 NA Intergenic Intergenic -52452 NR_033877 400123 Hs.577960 NR_033877 LINC00548 - long intergenic non-protein coding RNA 548 ncRNA 13-PTNLD9-TUMOR_peak_47580 chr7 56652612 56652752 + 15.90467 NA Intergenic L1PA2|LINE|L1 -46859 NR_108099 101928401 Hs.385614 NR_108099 ENSG00000233288 LOC101928401 - uncharacterized LOC101928401 ncRNA 13-PTNLD9-TUMOR_peak_15512 chr14 34519769 34520100 + 15.90467 NA Intergenic L2|LINE|L2 -99650 NM_022073 112399 Hs.135507 NM_022073 HPRD:06972 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia-inducible factor 3 protein-coding 13-PTNLD9-TUMOR_peak_28459 chr2 131818917 131819148 + 15.90467 NA intron (NM_001009993, intron 3 of 6) intron (NM_001009993, intron 3 of 6) 31972 NM_001009993 130074 Hs.534679 NM_001009993 HPRD:17295 FAM168B MANI family with sequence similarity 168, member B protein-coding 13-PTNLD9-TUMOR_peak_52377 chr8 143316531 143316657 + 15.90467 NA intron (NM_145003, intron 12 of 13) intron (NM_145003, intron 12 of 13) 36877 NR_024378 619434 Hs.393308 NR_024378 ENSG00000254008 LINC00051 C8orf43|NCRNA00051 long intergenic non-protein coding RNA 51 ncRNA 13-PTNLD9-TUMOR_peak_39772 chr4 159870370 159870511 + 15.90467 NA intron (NM_152543, intron 3 of 4) MER94|DNA|hAT-Blackjack 85893 NM_152543 152940 Hs.415576 NM_152543 C4orf45 - chromosome 4 open reading frame 45 protein-coding 13-PTNLD9-TUMOR_peak_47916 chr7 73482219 73482457 + 15.89366 NA intron (NM_001278939, intron 33 of 33) intron (NM_001278939, intron 33 of 33) -15769 NM_002314 3984 Hs.647035 NM_002314 HPRD:03210 LIMK1 LIMK|LIMK-1 LIM domain kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_20063 chr16 88276339 88276605 + 15.89024 NA Intergenic Intergenic 48585 NR_110944 101928880 Hs.634835 NR_110944 ENSG00000260420 LOC101928880 LA16c-444G7.2 uncharacterized LOC101928880 ncRNA 13-PTNLD9-TUMOR_peak_54304 chr9 107833468 107833635 + 15.88560 NA Intergenic Intergenic -143024 NM_005502 19 Hs.659274 NM_005502 HPRD:02501 ABCA1 ABC-1|ABC1|CERP|HDLDT1|TGD ATP-binding cassette, sub-family A (ABC1), member 1 protein-coding 13-PTNLD9-TUMOR_peak_37803 chr4 6955723 6955970 + 15.88560 NA intron (NM_001113361, intron 2 of 13) intron (NM_001113361, intron 2 of 13) -33043 NM_001113363 57533 Hs.518611 NM_020773 HPRD:11623 TBC1D14 - TBC1 domain family, member 14 protein-coding 13-PTNLD9-TUMOR_peak_44831 chr6 36842299 36842620 + 15.88560 NA intron (NM_001286636, intron 1 of 9) CpG 341 NM_016059 51645 Hs.27693 NM_016059 HPRD:03194 PPIL1 CYPL1|PPIase|hCyPX peptidylprolyl isomerase (cyclophilin)-like 1 protein-coding 13-PTNLD9-TUMOR_peak_53168 chr9 36848417 36848619 + 15.88560 NA intron (NM_001280549, intron 6 of 7) intron (NM_001280549, intron 6 of 7) 15787 NR_039766 100616278 NR_039766 MIR4540 - microRNA 4540 ncRNA 13-PTNLD9-TUMOR_peak_35387 chr3 112395719 112395919 + 15.88560 NA Intergenic Intergenic -35829 NM_199511 151887 Hs.477128 NM_199511 HPRD:10508 CCDC80 DRO1|SSG1|URB|okuribin coiled-coil domain containing 80 protein-coding 13-PTNLD9-TUMOR_peak_10200 chr11 64918229 64918446 + 15.88560 NA Intergenic Intergenic -16334 NM_172230 84447 Hs.75859 NM_032431 HPRD:07618 SYVN1 DER3|HRD1 synovial apoptosis inhibitor 1, synoviolin protein-coding 13-PTNLD9-TUMOR_peak_22781 chr18 21231316 21231560 + 15.88560 NA intron (NM_173505, intron 1 of 9) intron (NM_173505, intron 1 of 9) 11411 NM_173505 147463 Hs.374774 NM_173505 HPRD:12464 ANKRD29 - ankyrin repeat domain 29 protein-coding 13-PTNLD9-TUMOR_peak_41261 chr5 73122638 73122863 + 15.88560 NA intron (NM_001244364, intron 1 of 27) intron (NM_001244364, intron 1 of 27) 13407 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor (GEF) 28 protein-coding 13-PTNLD9-TUMOR_peak_16678 chr14 105491271 105491460 + 15.88560 NA Intergenic MLT1H|LTR|ERVL-MaLR -3940 NM_017955 55038 Hs.34045 NM_017955 HPRD:13015 CDCA4 HEPP|SEI-3/HEPP cell division cycle associated 4 protein-coding 13-PTNLD9-TUMOR_peak_10361 chr11 67273472 67273780 + 15.88421 NA promoter-TSS (NM_001130848) promoter-TSS (NM_001130848) -783 NM_004910 9600 Hs.372295 NM_004910 HPRD:07497 PITPNM1 DRES9|NIR2|PITPNM|RDGB|RDGB1|RDGBA|RDGBA1|Rd9 phosphatidylinositol transfer protein, membrane-associated 1 protein-coding 13-PTNLD9-TUMOR_peak_13347 chr12 72418470 72418759 + 15.88023 NA intron (NM_173353, intron 9 of 10) intron (NM_173353, intron 9 of 10) 85988 NM_173353 121278 Hs.736576 NM_173353 HPRD:09594 TPH2 ADHD7|NTPH tryptophan hydroxylase 2 protein-coding 13-PTNLD9-TUMOR_peak_7946 chr10 88777353 88777553 + 15.88023 NA Intergenic Intergenic -2593 NM_001146157 643161 Hs.729945 NM_001146157 ENSG00000188100 FAM25A bA96C23.5 family with sequence similarity 25, member A protein-coding 13-PTNLD9-TUMOR_peak_10007 chr11 61370724 61371028 + 15.88023 NA intron (NR_110189, intron 3 of 3) intron (NR_110189, intron 3 of 3) -11632 NR_002775 113157 Hs.502733 NR_002775 ENSG00000243742 RPLP0P2 RPLP0L2|RPLP0_3_1146 ribosomal protein, large, P0 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_34792 chr3 59233319 59233542 + 15.87957 NA Intergenic Intergenic -197715 NM_198463 200844 Hs.368434 NM_198463 HPRD:13458 C3orf67 - chromosome 3 open reading frame 67 protein-coding 13-PTNLD9-TUMOR_peak_11120 chr11 107656314 107656575 + 15.87957 NA Intergenic LTR8|LTR|ERV1 73470 NM_017515 54733 Hs.524014 NM_017515 HPRD:15377 SLC35F2 HSNOV1 solute carrier family 35, member F2 protein-coding 13-PTNLD9-TUMOR_peak_8485 chr10 123271550 123271699 + 15.87957 NA intron (NM_001144917, intron 7 of 15) intron (NM_001144917, intron 7 of 15) 81857 NM_001144913 2263 Hs.533683 NM_000141 HPRD:01492 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 13-PTNLD9-TUMOR_peak_51759 chr8 121013840 121014060 + 15.87957 NA intron (NM_001283012, intron 3 of 6) intron (NM_001283012, intron 3 of 6) -123397 NM_021110 7373 Hs.409662 NM_021110 HPRD:00379 COL14A1 UND collagen, type XIV, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_36228 chr3 141991102 141991322 + 15.87255 NA Intergenic AluJr|SINE|Alu -46763 NM_001039547 256356 Hs.135904 NM_152776 HPRD:14612 GK5 - glycerol kinase 5 (putative) protein-coding 13-PTNLD9-TUMOR_peak_38710 chr4 82085911 82086131 + 15.87092 NA intron (NM_006259, intron 6 of 18) X6B_LINE|LINE|CR1 -10710 NM_001282481 5593 Hs.232044 NM_006259 HPRD:09034 PRKG2 PRKGR2|cGK2|cGKII protein kinase, cGMP-dependent, type II protein-coding 13-PTNLD9-TUMOR_peak_39969 chr4 184668106 184668410 + 15.87092 NA Intergenic Intergenic 87838 NM_199053 60684 Hs.443240 NM_021942 HPRD:10968 TRAPPC11 C4orf41|FOIGR|GRY|LGMD2S trafficking protein particle complex 11 protein-coding 13-PTNLD9-TUMOR_peak_34089 chr3 24262402 24262591 + 15.87092 NA intron (NM_001128176, intron 4 of 10) intron (NM_001128176, intron 4 of 10) 69681 NR_121667 101927854 Hs.570625 NR_121667 LOC101927854 - uncharacterized LOC101927854 ncRNA 13-PTNLD9-TUMOR_peak_34177 chr3 31082967 31083259 + 15.87092 NA Intergenic Intergenic -146960 NM_207359 339896 Hs.657052 NM_207359 HPRD:13557 GADL1 ADC|CSADC|HuADC|HuCSADC glutamate decarboxylase-like 1 protein-coding 13-PTNLD9-TUMOR_peak_13752 chr12 109022288 109022436 + 15.86224 NA intron (NM_003006, intron 1 of 1) intron (NM_003006, intron 1 of 1) 3492 NM_001206609 6404 Hs.591014 NM_003006 HPRD:02845 SELPLG CD162|CLA|PSGL-1|PSGL1 selectin P ligand protein-coding 13-PTNLD9-TUMOR_peak_11195 chr11 111606505 111606807 + 15.86224 NA intron (NM_181699, intron 15 of 15) intron (NM_181699, intron 15 of 15) 30513 NM_001177562 5519 Hs.269128 NM_002716 HPRD:04384 PPP2R1B PP2A-Abeta|PR65B protein phosphatase 2, regulatory subunit A, beta protein-coding 13-PTNLD9-TUMOR_peak_7545 chr10 68595924 68596154 + 15.85093 NA intron (NM_013266, intron 7 of 17) intron (NM_013266, intron 7 of 17) -89753 NM_178011 347731 Hs.652155 NM_178011 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 13-PTNLD9-TUMOR_peak_42444 chr5 142623544 142623784 + 15.85093 NA Intergenic Intergenic 159590 NM_000176 2908 Hs.122926 NM_000176 HPRD:00679 NR3C1 GCCR|GCR|GR|GRL nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) protein-coding 13-PTNLD9-TUMOR_peak_43297 chr5 179108179 179108427 + 15.85093 NA promoter-TSS (NM_001164444) promoter-TSS (NM_001164444) -328 NM_001164444 646019 Hs.535767 NM_001164444 ENSG00000204659 CBY3 - chibby homolog 3 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_21490 chr17 48960279 48960455 + 15.85093 NA Intergenic Intergenic -15028 NM_001243877 10140 Hs.703321 NM_005749 HPRD:09273 TOB1 APRO6|PIG49|TOB|TROB|TROB1 transducer of ERBB2, 1 protein-coding 13-PTNLD9-TUMOR_peak_33958 chr3 16102441 16102665 + 15.84451 NA Intergenic Intergenic -113631 NM_054110 117248 Hs.411308 NM_054110 HPRD:13563 GALNT15 GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5 polypeptide N-acetylgalactosaminyltransferase 15 protein-coding 13-PTNLD9-TUMOR_peak_7900 chr10 85282735 85283053 + 15.83960 NA Intergenic Intergenic -616291 NM_014394 27069 Hs.352656 NM_014394 HPRD:17038 GHITM DERP2|HSPC282|MICS1|PTD010|TMBIM5 growth hormone inducible transmembrane protein protein-coding 13-PTNLD9-TUMOR_peak_47918 chr7 73508504 73508664 + 15.83960 NA intron (NM_001204426, intron 1 of 14) intron (NM_001204426, intron 1 of 14) 1098 NM_001204426 3984 Hs.647035 NM_002314 HPRD:03210 LIMK1 LIMK|LIMK-1 LIM domain kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_5043 chr1 202790601 202790888 + 15.83960 NA intron (NR_038135, intron 1 of 2) intron (NR_038135, intron 1 of 2) 1359 NR_038135 641515 Hs.23459 NR_038135 MGAT4EP - MGAT4 family, member E, pseudogene pseudo 13-PTNLD9-TUMOR_peak_42460 chr5 142975913 142976134 + 15.83960 NA Intergenic Intergenic -83402 NR_049829 100846991 NR_049829 miRBase:MI0018176 MIR5197 - microRNA 5197 ncRNA 13-PTNLD9-TUMOR_peak_35379 chr3 112348506 112348650 + 15.83960 NA intron (NM_199511, intron 3 of 7) intron (NM_199511, intron 3 of 7) 11412 NM_199512 151887 Hs.477128 NM_199511 HPRD:10508 CCDC80 DRO1|SSG1|URB|okuribin coiled-coil domain containing 80 protein-coding 13-PTNLD9-TUMOR_peak_26118 chr2 11009080 11009377 + 15.83960 NA Intergenic Intergenic -9165 NR_110575 101929733 Hs.736697 NR_110575 ENSG00000271952 LOC101929733 - uncharacterized LOC101929733 ncRNA 13-PTNLD9-TUMOR_peak_39930 chr4 183129357 183129535 + 15.83960 NA Intergenic Intergenic 39000 NR_031640 100302270 NR_031640 miRBase:MI0006372 MIR1305 MIRN1305|hsa-mir-1305 microRNA 1305 ncRNA 13-PTNLD9-TUMOR_peak_6430 chr10 7728383 7728709 + 15.83960 NA Intergenic Intergenic -16690 NM_002216 3698 Hs.75285 NM_002216 HPRD:00890 ITIH2 H2P|SHAP inter-alpha-trypsin inhibitor heavy chain 2 protein-coding 13-PTNLD9-TUMOR_peak_11694 chr11 131292514 131292656 + 15.83960 NA intron (NM_001048209, intron 1 of 7) intron (NM_001048209, intron 1 of 7) 52214 NM_001048209 50863 Hs.504352 NM_016522 HPRD:06398 NTM HNT|IGLON2|NTRI neurotrimin protein-coding 13-PTNLD9-TUMOR_peak_9543 chr11 35651610 35651865 + 15.83960 NA Intergenic Intergenic 12002 NM_014344 24147 Hs.39384 NM_014344 HPRD:16897 FJX1 - four jointed box 1 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_5803 chr1 230987114 230987308 + 15.83960 NA intron (NM_032800, intron 2 of 3) intron (NM_032800, intron 2 of 3) 4571 NM_001136495 84886 Hs.520494 NM_032800 HPRD:13359 C1orf198 - chromosome 1 open reading frame 198 protein-coding 13-PTNLD9-TUMOR_peak_23164 chr18 47626388 47626706 + 15.83446 NA intron (NM_001080467, intron 1 of 39) intron (NM_001080467, intron 1 of 39) 26386 NR_036204 100422865 NR_036204 MIR4320 - microRNA 4320 ncRNA 13-PTNLD9-TUMOR_peak_34406 chr3 45167179 45167500 + 15.83446 NA intron (NM_022842, intron 1 of 8) intron (NM_022842, intron 1 of 8) 20575 NM_022842 64866 Hs.476093 NM_022842 HPRD:16696 CDCP1 CD318|SIMA135|TRASK CUB domain containing protein 1 protein-coding 13-PTNLD9-TUMOR_peak_49476 chr7 142976515 142976733 + 15.83446 NA Intergenic Intergenic -5368 NM_001242773 135932 Hs.17558 NM_153345 HPRD:08298 TMEM139 - transmembrane protein 139 protein-coding 13-PTNLD9-TUMOR_peak_23012 chr18 42234608 42234827 + 15.83039 NA Intergenic Intergenic -25421 NM_001130110 26040 Hs.435458 NM_015559 HPRD:10224 SETBP1 SEB SET binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_19968 chr16 85157620 85157913 + 15.83039 NA Intergenic Intergenic -11652 NM_198491 339145 Hs.125713 NM_198491 HPRD:13488 FAM92B - family with sequence similarity 92, member B protein-coding 13-PTNLD9-TUMOR_peak_26660 chr2 39750852 39751080 + 15.82685 NA intron (NR_037875, intron 5 of 5) intron (NR_037875, intron 5 of 5) 86409 NR_037875 728730 Hs.655344 NR_037875 ENSG00000231312 LOC728730 - uncharacterized LOC728730 ncRNA 13-PTNLD9-TUMOR_peak_16820 chr15 25661930 25662187 + 15.82685 NA intron (NM_130839, intron 1 of 12) L1ME1|LINE|L1 -11405 NM_130838 7337 Hs.598862 NM_000462 HPRD:03375 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 13-PTNLD9-TUMOR_peak_46580 chr6 170102036 170102347 + 15.82540 NA promoter-TSS (NM_001202550) promoter-TSS (NM_001202550) -32 NM_001202550 253769 Hs.131903 NM_182552 HPRD:11352 WDR27 - WD repeat domain 27 protein-coding 13-PTNLD9-TUMOR_peak_29077 chr2 172750719 172751082 + 15.82540 NA promoter-TSS (NM_003705) promoter-TSS (NM_003705) -84 NM_003705 8604 Hs.470608 NM_003705 HPRD:04719 SLC25A12 AGC1|ARALAR solute carrier family 25 (aspartate/glutamate carrier), member 12 protein-coding 13-PTNLD9-TUMOR_peak_43212 chr5 176988393 176988697 + 15.82540 NA Intergenic LTR13|LTR|ERVK -6997 NM_001190946 54540 Hs.484289 NM_019057 HPRD:07671 FAM193B IRIZIO family with sequence similarity 193, member B protein-coding 13-PTNLD9-TUMOR_peak_36902 chr3 181661151 181661399 + 15.82540 NA Intergenic Intergenic -8877 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 13-PTNLD9-TUMOR_peak_37469 chr3 197083182 197083349 + 15.82540 NA Intergenic Intergenic -57122 NM_001290983 1739 Hs.292549 NM_004087 HPRD:03007 DLG1 DLGH1|SAP-97|SAP97|dJ1061C18.1.1|hdlg discs, large homolog 1 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_2097 chr1 65891477 65891703 + 15.82540 NA intron (NM_001003680, intron 2 of 19) L2a|LINE|L2 5191 NM_001198681 54741 Hs.23581 NM_017526 HPRD:13987 LEPROT LEPR|OB-RGRP|OBRGRP|VPS55 leptin receptor overlapping transcript protein-coding 13-PTNLD9-TUMOR_peak_55686 chrX 30907351 30907721 + 15.82540 NA promoter-TSS (NM_152787) promoter-TSS (NM_152787) -25 NM_152787 257397 Hs.188256 NM_152787 HPRD:06738 TAB3 MAP3K7IP3|NAP1 TGF-beta activated kinase 1/MAP3K7 binding protein 3 protein-coding 13-PTNLD9-TUMOR_peak_33377 chr22 43011296 43011957 + 15.82253 NA promoter-TSS (NM_178136) promoter-TSS (NM_178136) 375 NR_029422 267010 Hs.574857 NR_029422 ENSG00000270022 RNU12 RNU12-1|RNU12L|RNU12P|dJ222E13.7 RNA, U12 small nuclear snRNA 13-PTNLD9-TUMOR_peak_33176 chr22 35826955 35827229 + 15.79852 NA Intergenic Intergenic 30976 NM_006739 4174 Hs.517582 NM_006739 HPRD:04075 MCM5 CDC46|P1-CDC46 minichromosome maintenance complex component 5 protein-coding 13-PTNLD9-TUMOR_peak_20464 chr17 9519704 9519972 + 15.79852 NA intron (NM_145054, intron 8 of 13) L1HS|LINE|L1 -29016 NM_153210 124739 Hs.709621 NM_153210 ENSG00000154914 USP43 - ubiquitin specific peptidase 43 protein-coding 13-PTNLD9-TUMOR_peak_6938 chr10 35589125 35589291 + 15.79852 NA intron (NM_181698, intron 3 of 11) L1ME1|LINE|L1 -36594 NM_145012 219771 Hs.14745 NM_145012 HPRD:10700 CCNY C10orf9|CBCP1|CCNX|CFP1 cyclin Y protein-coding 13-PTNLD9-TUMOR_peak_12657 chr12 47336554 47336701 + 15.79852 NA Intergenic Intergenic -116847 NM_018018 55089 Hs.446077 NM_018018 HPRD:12159 SLC38A4 ATA3|NAT3|PAAT solute carrier family 38, member 4 protein-coding 13-PTNLD9-TUMOR_peak_42021 chr5 131699146 131699351 + 15.79687 NA intron (NR_110997, intron 3 of 7) L2a|LINE|L2 2043 NR_037500 100500865 NR_037500 miRBase:MI0016592 MIR3936 - microRNA 3936 ncRNA 13-PTNLD9-TUMOR_peak_43475 chr6 2843576 2843841 + 15.79247 NA Intergenic MLT1A1-int|LTR|ERVL-MaLR -1425 NR_073112 1992 Hs.381167 NM_030666 HPRD:00555 SERPINB1 EI|ELANH2|HEL57|LEI|M/NEI|MNEI|PI-2|PI2 serpin peptidase inhibitor, clade B (ovalbumin), member 1 protein-coding 13-PTNLD9-TUMOR_peak_38737 chr4 83703880 83704138 + 15.78190 NA intron (NM_001037582, intron 1 of 4) intron (NM_001037582, intron 1 of 4) 16001 NM_024906 79966 Hs.379191 NM_024906 HPRD:09756 SCD5 ACOD4|FADS4|HSCD5|SCD2|SCD4 stearoyl-CoA desaturase 5 protein-coding 13-PTNLD9-TUMOR_peak_25262 chr19 48222313 48222601 + 15.78094 NA intron (NM_014601, intron 3 of 5) intron (NM_014601, intron 3 of 5) 5856 NM_014601 30846 Hs.744963 NM_014601 HPRD:10434 EHD2 PAST2 EH-domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_25668 chr19 55672034 55672207 + 15.78094 NA exon (NM_001256716, exon 9 of 12) exon (NM_001256716, exon 9 of 12) -3020 NM_000363 7137 Hs.709179 NM_000363 HPRD:11769 TNNI3 CMD1FF|CMD2A|CMH7|RCM1|TNNC1|cTnI troponin I type 3 (cardiac) protein-coding 13-PTNLD9-TUMOR_peak_27758 chr2 97617040 97617176 + 15.78094 NA intron (NM_001122646, intron 7 of 16) intron (NM_001122646, intron 7 of 16) 32265 NR_110209 101927053 Hs.677537 NR_110209 LOC101927053 - uncharacterized LOC101927053 ncRNA 13-PTNLD9-TUMOR_peak_47012 chr7 21145950 21146352 + 15.78094 NA Intergenic Intergenic 279234 NR_026673 222901 Hs.722187 NR_026673 ENSG00000219451 RPL23P8 RPL23_4_790 ribosomal protein L23 pseudogene 8 pseudo 13-PTNLD9-TUMOR_peak_470 chr1 13955323 13955571 + 15.77529 NA Intergenic Intergenic 43480 NM_001006625 10630 Hs.468675 NM_006474 HPRD:16398 PDPN AGGRUS|GP36|GP40|Gp38|HT1A-1|OTS8|PA2.26|T1A|T1A-2|T1A2|TI1A podoplanin protein-coding 13-PTNLD9-TUMOR_peak_52007 chr8 129047439 129047595 + 15.77529 NA intron (NR_003367, intron 4 of 7) intron (NR_003367, intron 4 of 7) -13881 NR_031612 100302175 NR_031612 miRBase:MI0006340 MIR1207 MIRN1207|hsa-mir-1207 microRNA 1207 ncRNA 13-PTNLD9-TUMOR_peak_46572 chr6 169572656 169572820 + 15.77529 NA Intergenic Intergenic 81471 NM_003247 7058 Hs.371147 NM_003247 HPRD:01766 THBS2 TSP2 thrombospondin 2 protein-coding 13-PTNLD9-TUMOR_peak_13686 chr12 106328117 106328354 + 15.77529 NA Intergenic Intergenic 205576 NM_014840 9891 Hs.524692 NM_014840 HPRD:12171 NUAK1 ARK5 NUAK family, SNF1-like kinase, 1 protein-coding 13-PTNLD9-TUMOR_peak_2350 chr1 86895597 86895769 + 15.77529 NA intron (NM_006536, intron 3 of 13) intron (NM_006536, intron 3 of 13) 5914 NM_006536 9635 Hs.241551 NM_006536 HPRD:04923 CLCA2 CACC|CACC3|CLCRG2|CaCC-3 chloride channel accessory 2 protein-coding 13-PTNLD9-TUMOR_peak_9660 chr11 45466481 45466634 + 15.77529 NA Intergenic LTR16A2|LTR|ERVL 73609 NR_122071 399886 Hs.559970 NR_122071 HPRD:13453 LOC399886 - uncharacterized LOC399886 ncRNA 13-PTNLD9-TUMOR_peak_50960 chr8 55192763 55192968 + 15.77529 NA Intergenic Intergenic 145084 NM_014175 29088 Hs.18349 NM_014175 MRPL15 L15mt|MRP-L15|MRP-L7|RPML7 mitochondrial ribosomal protein L15 protein-coding 13-PTNLD9-TUMOR_peak_28652 chr2 145401450 145401646 + 15.77529 NA Intergenic Intergenic -23986 NR_033870 401014 Hs.742290 NR_033870 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_2154 chr1 68452999 68453382 + 15.77153 NA intron (NR_040077, intron 1 of 9) intron (NR_040077, intron 1 of 9) 63270 NM_004675 9077 Hs.194695 NM_004675 HPRD:05547 DIRAS3 ARHI|NOEY2 DIRAS family, GTP-binding RAS-like 3 protein-coding 13-PTNLD9-TUMOR_peak_17385 chr15 60666868 60667126 + 15.77153 NA intron (NM_001002857, intron 4 of 13) intron (NM_001002857, intron 4 of 13) 23188 NM_001002858 302 Hs.511605 NM_004039 HPRD:01061 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 13-PTNLD9-TUMOR_peak_40977 chr5 58423507 58423710 + 15.76840 NA intron (NM_001104631, intron 5 of 14) intron (NM_001104631, intron 5 of 14) -88269 NM_001197222 5144 Hs.117545 NM_006203 HPRD:02530 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D, cAMP-specific protein-coding 13-PTNLD9-TUMOR_peak_23687 chr19 3055294 3055546 + 15.76840 NA intron (NM_198969, intron 5 of 6) intron (NM_198969, intron 5 of 6) 6951 NM_001130 166 Hs.515053 NM_001130 HPRD:02556 AES AES-1|AES-2|ESP1|GRG|GRG5|TLE5 amino-terminal enhancer of split protein-coding 13-PTNLD9-TUMOR_peak_50695 chr8 41015710 41016113 + 15.76840 NA Intergenic Intergenic 151079 NM_003012 6422 Hs.213424 NM_003012 HPRD:09165 SFRP1 FRP|FRP-1|FRP1|FrzA|SARP2 secreted frizzled-related protein 1 protein-coding 13-PTNLD9-TUMOR_peak_17543 chr15 69849750 69850021 + 15.76840 NA Intergenic Intergenic -4174 NR_026979 145837 Hs.410126 NR_026979 LOC145837 - uncharacterized LOC145837 ncRNA 13-PTNLD9-TUMOR_peak_11375 chr11 118560609 118561100 + 15.76840 NA Intergenic Intergenic -10473 NM_007180 11181 Hs.129712 NM_007180 HPRD:02038 TREH TRE|TREA trehalase (brush-border membrane glycoprotein) protein-coding 13-PTNLD9-TUMOR_peak_43968 chr6 17032870 17033138 + 15.76840 NA Intergenic Intergenic -69485 NM_001190766 401236 Hs.677399 NM_001190766 ENSG00000230873 STMND1 - stathmin domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_48194 chr7 84107501 84107691 + 15.76840 NA Intergenic Intergenic -54196 NR_110080 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 13-PTNLD9-TUMOR_peak_56077 chrX 68156571 68156792 + 15.76840 NA Intergenic Intergenic 107841 NM_004429 1947 Hs.144700 NM_004429 HPRD:02072 EFNB1 CFND|CFNS|EFB1|EFL3|EPLG2|Elk-L|LERK2 ephrin-B1 protein-coding 13-PTNLD9-TUMOR_peak_6879 chr10 32428378 32428543 + 15.76591 NA Intergenic Intergenic -83089 NM_004521 3799 Hs.327736 NM_004521 HPRD:07214 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 13-PTNLD9-TUMOR_peak_10367 chr11 67381544 67381862 + 15.74824 NA intron (NR_033791, intron 4 of 4) intron (NR_033791, intron 4 of 4) 1432 NR_033791 390213 Hs.523838 NR_033791 DOC2GP - double C2-like domains, gamma, pseudogene pseudo 13-PTNLD9-TUMOR_peak_11458 chr11 122526295 122526657 + 15.74242 NA promoter-TSS (NM_032873) promoter-TSS (NM_032873) 78 NM_032873 84959 Hs.444075 NM_032873 HPRD:16463 UBASH3B STS-1|STS1|TULA-2|p70 ubiquitin associated and SH3 domain containing B protein-coding 13-PTNLD9-TUMOR_peak_13904 chr12 113576673 113576876 + 15.73553 NA Intergenic Intergenic -2730 NM_001193520 8437 Hs.528693 NM_004658 HPRD:04986 RASAL1 RASAL RAS protein activator like 1 (GAP1 like) protein-coding 13-PTNLD9-TUMOR_peak_19630 chr16 68525038 68525256 + 15.73160 NA Intergenic Intergenic -42738 NM_018667 55512 Hs.368421 NM_018667 HPRD:16154 SMPD3 NSMASE2 sphingomyelin phosphodiesterase 3, neutral membrane (neutral sphingomyelinase II) protein-coding 13-PTNLD9-TUMOR_peak_2636 chr1 100435914 100436112 + 15.73160 NA promoter-TSS (NM_001271685) promoter-TSS (NM_001271685) 21 NM_001271685 23443 Hs.448979 NM_012243 HPRD:10413 SLC35A3 AMRS solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3 protein-coding 13-PTNLD9-TUMOR_peak_52386 chr8 143709539 143709747 + 15.73160 NA Intergenic Intergenic -13810 NM_015193 23237 Hs.40888 NM_015193 ARC Arg3.1 activity-regulated cytoskeleton-associated protein protein-coding 13-PTNLD9-TUMOR_peak_46922 chr7 16169447 16169697 + 15.73160 NA intron (NM_001101417, intron 8 of 8) intron (NM_001101417, intron 8 of 8) -80539 NR_038946 100506025 Hs.649029 NR_038946 ENSG00000229688 ISPD-AS1 - ISPD antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_28470 chr2 132269957 132270234 + 15.72926 NA intron (NR_026922, intron 10 of 17) intron (NR_026922, intron 10 of 17) -15312 NM_001258306 90557 Hs.351461 NM_138770 HPRD:14274 CCDC74A - coiled-coil domain containing 74A protein-coding 13-PTNLD9-TUMOR_peak_13742 chr12 108807892 108808078 + 15.72759 NA Intergenic LTR16A1|LTR|ERVL 59481 NR_120483 102723562 Hs.455693 NR_120483 LINC01498 - long intergenic non-protein coding RNA 1498 ncRNA 13-PTNLD9-TUMOR_peak_54542 chr9 117339133 117339304 + 15.72759 NA Intergenic AluSc|SINE|Alu -10776 NM_004888 9550 Hs.388654 NM_004888 ATP6V1G1 ATP6G|ATP6G1|ATP6GL|ATP6J|Vma10 ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1 protein-coding 13-PTNLD9-TUMOR_peak_38870 chr4 89700667 89700841 + 15.72759 NA intron (NM_001015045, intron 5 of 17) intron (NM_001015045, intron 5 of 17) 43758 NM_001015045 10144 Hs.97270 NM_014883 HPRD:10944 FAM13A ARHGAP48|FAM13A1 family with sequence similarity 13, member A protein-coding 13-PTNLD9-TUMOR_peak_11246 chr11 113055341 113055520 + 15.72759 NA intron (NM_181351, intron 2 of 19) intron (NM_181351, intron 2 of 19) 89193 NR_034101 100288346 Hs.661826 NR_034101 ENSG00000227487 NCAM1-AS1 - NCAM1 antisense RNA1 ncRNA 13-PTNLD9-TUMOR_peak_31017 chr20 37746289 37746486 + 15.72759 NA Intergenic MLT1H|LTR|ERVL-MaLR 107004 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LOC339568 - uncharacterized LOC339568 ncRNA 13-PTNLD9-TUMOR_peak_5847 chr1 232903183 232903390 + 15.72759 NA Intergenic Intergenic -24825 NR_110683 101927683 Hs.520568 NR_110683 ENSG00000236497 LOC101927683 - uncharacterized LOC101927683 ncRNA 13-PTNLD9-TUMOR_peak_24412 chr19 18630882 18631234 + 15.72717 NA intron (NM_006532, intron 1 of 11) intron (NM_006532, intron 1 of 11) 1879 NM_006532 8178 Hs.515260 NM_006532 HPRD:02615 ELL C19orf17|ELL1|MEN|PPP1R68 elongation factor RNA polymerase II protein-coding 13-PTNLD9-TUMOR_peak_44554 chr6 31648449 31649039 + 15.72305 NA promoter-TSS (NM_025262).2 promoter-TSS (NM_025262).2 -594 NM_025262 80741 Hs.25738 NM_025262 HPRD:14328 LY6G5C C6orf20|G5C|LY6G5CA|LY6G5CB|NG33 lymphocyte antigen 6 complex, locus G5C protein-coding 13-PTNLD9-TUMOR_peak_16644 chr14 104018858 104019133 + 15.72305 NA Intergenic L2c|LINE|L2 9660 NM_001015049 9529 Hs.5443 NM_004873 HPRD:04862 BAG5 BAG-5 BCL2-associated athanogene 5 protein-coding 13-PTNLD9-TUMOR_peak_31468 chr20 49454220 49454373 + 15.71820 NA intron (NM_001010974, intron 3 of 3) intron (NM_001010974, intron 3 of 3) 42865 NM_001010974 55653 Hs.381178 NM_017843 HPRD:06314 BCAS4 CNOL breast carcinoma amplified sequence 4 protein-coding 13-PTNLD9-TUMOR_peak_46393 chr6 157635159 157635358 + 15.71820 NA Intergenic MamRep605|Unknown|Unknown 110033 NM_018452 729515 Hs.157212 NM_018452 ENSG00000215712 TMEM242 BM033|C6orf35 transmembrane protein 242 protein-coding 13-PTNLD9-TUMOR_peak_36950 chr3 183723868 183724235 + 15.71820 NA promoter-TSS (NR_046570) promoter-TSS (NR_046570) -75 NR_046570 100873982 Hs.570696 NR_046570 ENSG00000223882 ABCC5-AS1 - ABCC5 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_42453 chr5 142886556 142886771 + 15.71820 NA Intergenic Intergenic -71586 NM_001018075 2908 Hs.122926 NM_000176 HPRD:00679 NR3C1 GCCR|GCR|GR|GRL nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) protein-coding 13-PTNLD9-TUMOR_peak_15761 chr14 52547605 52547885 + 15.71820 NA Intergenic Intergenic -11799 NM_007361 22795 Hs.369840 NM_007361 HPRD:05654 NID2 NID-2 nidogen 2 (osteonidogen) protein-coding 13-PTNLD9-TUMOR_peak_42924 chr5 168078780 168078928 + 15.71140 NA Intergenic L1MB5|LINE|L1 -72240 NM_024594 79646 Hs.388400 NM_024594 PANK3 - pantothenate kinase 3 protein-coding 13-PTNLD9-TUMOR_peak_42176 chr5 135364509 135364850 + 15.71140 NA promoter-TSS (NM_000358) promoter-TSS (NM_000358) 95 NM_000358 7045 Hs.369397 NM_000358 HPRD:03409 TGFBI BIGH3|CDB1|CDG2|CDGG1|CSD|CSD1|CSD2|CSD3|EBMD|LCD1 transforming growth factor, beta-induced, 68kDa protein-coding 13-PTNLD9-TUMOR_peak_21547 chr17 54219737 54220009 + 15.71140 NA Intergenic Intergenic -10963 NM_153228 162282 Hs.673040 NM_153228 HPRD:08238 ANKFN1 - ankyrin-repeat and fibronectin type III domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_34283 chr3 39093360 39093571 + 15.71140 NA promoter-TSS (NM_020839) promoter-TSS (NM_020839) -42 NM_020839 57599 Hs.109778 NM_020839 HPRD:11146 WDR48 P80|SPG60|UAF1 WD repeat domain 48 protein-coding 13-PTNLD9-TUMOR_peak_9364 chr11 27444773 27444976 + 15.71140 NA intron (NM_018490, intron 1 of 17) intron (NM_018490, intron 1 of 17) 49460 NM_018490 55366 Hs.502176 NM_018490 HPRD:05978 LGR4 BNMD17|GPR48 leucine-rich repeat containing G protein-coupled receptor 4 protein-coding 13-PTNLD9-TUMOR_peak_52944 chr9 25773851 25774018 + 15.71140 NA Intergenic LTR43|LTR|ERV1 -6120 NR_121604 101929582 Hs.140547 NR_121604 LINC01241 - long intergenic non-protein coding RNA 1241 ncRNA 13-PTNLD9-TUMOR_peak_48253 chr7 89808243 89808505 + 15.71019 NA intron (NR_110029, intron 2 of 2) intron (NR_110029, intron 2 of 2) 24685 NM_012449 26872 Hs.61635 NM_012449 HPRD:05106 STEAP1 PRSS24|STEAP six transmembrane epithelial antigen of the prostate 1 protein-coding 13-PTNLD9-TUMOR_peak_39856 chr4 170533747 170533913 + 15.71019 NA promoter-TSS (NM_012224) promoter-TSS (NM_012224) -52 NM_001199399 4750 Hs.481181 NM_012224 HPRD:06847 NEK1 NY-REN-55|SRPS2|SRPS2A|SRTD6 NIMA-related kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_39126 chr4 114936570 114936784 + 15.71019 NA Intergenic Intergenic -35799 NM_024590 79642 Hs.22895 NM_024590 HPRD:08034 ARSJ - arylsulfatase family, member J protein-coding 13-PTNLD9-TUMOR_peak_23466 chr18 72782760 72783064 + 15.71019 NA Intergenic Intergenic 138369 NM_175907 284273 Hs.465433 NM_175907 ZADH2 - zinc binding alcohol dehydrogenase domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_40507 chr5 28397595 28397960 + 15.71019 NA Intergenic MLT1F2|LTR|ERVL-MaLR -529200 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - lymphocyte-specific protein 1 pseudogene 3 pseudo 13-PTNLD9-TUMOR_peak_29628 chr2 205861256 205861403 + 15.71019 NA intron (NM_205863, intron 3 of 21) L1PA2|LINE|L1 450813 NM_057177 117583 Hs.657382 NM_057177 HPRD:09795 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3LC|PAR3beta|Par3Lb par-3 family cell polarity regulator beta protein-coding 13-PTNLD9-TUMOR_peak_47286 chr7 40961973 40962214 + 15.71019 NA Intergenic Intergenic 57444 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 13-PTNLD9-TUMOR_peak_16847 chr15 27369686 27369819 + 15.70307 NA intron (NM_033223, intron 3 of 9) intron (NM_033223, intron 3 of 9) 36714 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 LOC101928869 - uncharacterized LOC101928869 ncRNA 13-PTNLD9-TUMOR_peak_47915 chr7 73476575 73476742 + 15.70307 NA intron (NM_001278939, intron 27 of 33) intron (NM_001278939, intron 27 of 33) -21449 NM_002314 3984 Hs.647035 NM_002314 HPRD:03210 LIMK1 LIMK|LIMK-1 LIM domain kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_38677 chr4 79472772 79473143 + 15.70307 NA 5' UTR (NM_005139, exon 1 of 13) 5' UTR (NM_005139, exon 1 of 13) 215 NM_005139 306 Hs.480042 NM_005139 HPRD:00111 ANXA3 ANX3 annexin A3 protein-coding 13-PTNLD9-TUMOR_peak_24933 chr19 39602246 39602406 + 15.70307 NA TTS (NM_001004318) TTS (NM_001004318) -14094 NM_001014834 10298 Hs.20447 NM_005884 HPRD:05675 PAK4 - p21 protein (Cdc42/Rac)-activated kinase 4 protein-coding 13-PTNLD9-TUMOR_peak_21788 chr17 62988543 62988936 + 15.70307 NA Intergenic AluJb|SINE|Alu -17036 NR_026903 201283 Hs.396447 NM_153032 HPRD:08720 AMZ2P1 - archaelysin family metallopeptidase 2 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_3233 chr1 144339477 144339658 + 15.69855 NA intron (NR_111953, intron 2 of 3) intron (NR_111953, intron 2 of 3) 1192 NR_109754 728855 Hs.456578 NR_024510 ENSG00000235398 LINC00623 CH17-118O6.2 long intergenic non-protein coding RNA 623 ncRNA 13-PTNLD9-TUMOR_peak_4151 chr1 161438984 161439623 + 15.69763 NA Intergenic CpG -35902 NM_021642 2212 Hs.352642 NM_021642 HPRD:00906 FCGR2A CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|IGFR2 Fc fragment of IgG, low affinity IIa, receptor (CD32) protein-coding 13-PTNLD9-TUMOR_peak_48082 chr7 76637434 76637664 + 15.69005 NA intron (NR_023383, intron 6 of 10) intron (NR_023383, intron 6 of 10) 27410 NR_023383 441263 Hs.675888 NR_023383 ENSG00000265479 DTX2P1-UPK3BP1-PMS2P11 PMS2L11|PMS2P11|PMSR6 DTX2P1-UPK3BP1-PMS2P11 readthrough transcribed pseudogene pseudo 13-PTNLD9-TUMOR_peak_45097 chr6 43633147 43633380 + 15.68537 NA intron (NM_152732, intron 4 of 4) intron (NM_152732, intron 4 of 4) 20496 NM_001193341 221421 Hs.534585 NM_152732 RSPH9 C6orf206|CILD12|MRPS18AL1 radial spoke head 9 homolog (Chlamydomonas) protein-coding 13-PTNLD9-TUMOR_peak_54020 chr9 95823214 95823509 + 15.68537 NA intron (NM_001287007, intron 1 of 2) intron (NM_001287007, intron 1 of 2) 2391 NM_145006 203328 Hs.88417 NM_145006 HPRD:15453 SUSD3 - sushi domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_49137 chr7 131580442 131580777 + 15.68517 NA Intergenic Intergenic -14370 NR_110836 101928782 Hs.571369 NR_110836 ENSG00000224865 LOC101928782 - uncharacterized LOC101928782 ncRNA 13-PTNLD9-TUMOR_peak_42022 chr5 131700102 131700316 + 15.68517 NA TTS (NR_037500) TTS (NR_037500) 1082 NR_037500 100500865 NR_037500 miRBase:MI0016592 MIR3936 - microRNA 3936 ncRNA 13-PTNLD9-TUMOR_peak_34837 chr3 64172791 64173051 + 15.68278 NA promoter-TSS (NR_046702) promoter-TSS (NR_046702) -299 NR_046702 100874243 Hs.670840 NR_046702 ENSG00000226017 PRICKLE2-AS3 - PRICKLE2 antisense RNA 3 ncRNA 13-PTNLD9-TUMOR_peak_5671 chr1 227544383 227544585 + 15.68278 NA Intergenic Intergenic -38658 NM_003607 8476 Hs.35433 NM_003607 HPRD:04562 CDC42BPA MRCK|MRCKA|PK428 CDC42 binding protein kinase alpha (DMPK-like) protein-coding 13-PTNLD9-TUMOR_peak_5121 chr1 204042196 204042554 + 15.68278 NA 5' UTR (NM_005686, exon 1 of 14) 5' UTR (NM_005686, exon 1 of 14) 129 NM_005686 9580 Hs.201671 NM_005686 ENSG00000143842 SOX13 ICA12|Sox-13 SRY (sex determining region Y)-box 13 protein-coding 13-PTNLD9-TUMOR_peak_54500 chr9 116172547 116172745 + 15.68118 NA promoter-TSS (NM_001278629) promoter-TSS (NM_001278629) -278 NM_001278629 257169 Hs.632691 NM_152786 HPRD:12959 C9orf43 - chromosome 9 open reading frame 43 protein-coding 13-PTNLD9-TUMOR_peak_43622 chr6 5892217 5892782 + 15.68118 NA Intergenic L1PA2|LINE|L1 111778 NM_001278711 51299 Hs.103291 NM_016588 HPRD:07592 NRN1 NRN|dJ380B8.2 neuritin 1 protein-coding 13-PTNLD9-TUMOR_peak_49336 chr7 139043423 139043582 + 15.67303 NA intron (NM_001244584, intron 2 of 10) AluSx1|SINE|Alu -1090 NM_016019 51631 Hs.731488 NM_016019 HPRD:17456 LUC7L2 CGI-74|LUC7B2 LUC7-like 2 (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_22481 chr18 3624942 3625397 + 15.66662 NA intron (NM_001242764, intron 4 of 9) intron (NM_001242764, intron 4 of 9) 21434 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_22621 chr18 12086221 12086644 + 15.66508 NA Intergenic Intergenic -7416 NM_001277333 342850 Hs.448906 NM_001277333 ENSG00000181626 ANKRD62 DKFZp779B1634 ankyrin repeat domain 62 protein-coding 13-PTNLD9-TUMOR_peak_26858 chr2 47419089 47419311 + 15.66508 NA TTS (NR_110208) TTS (NR_110208) -15460 NM_001743 805 Hs.468442 NM_001743 HPRD:00242 CALM2 CAMII|PHKD|PHKD2 calmodulin 2 (phosphorylase kinase, delta) protein-coding 13-PTNLD9-TUMOR_peak_42830 chr5 159200219 159200777 + 15.66508 NA Intergenic CpG 97893 NR_109891 101927766 Hs.638568 NR_109891 ENSG00000253311 LOC101927766 - uncharacterized LOC101927766 ncRNA 13-PTNLD9-TUMOR_peak_29962 chr2 228682849 228683685 + 15.66508 NA TTS (NM_001130046) TTS (NM_001130046) 4709 NM_001130046 6364 Hs.75498 NM_004591 HPRD:03571 CCL20 CKb4|LARC|MIP-3-alpha|MIP-3a|MIP3A|SCYA20|ST38 chemokine (C-C motif) ligand 20 protein-coding 13-PTNLD9-TUMOR_peak_43077 chr5 173191524 173191719 + 15.66357 NA Intergenic Intergenic -18409 NR_108027 101928136 Hs.449267 NR_108027 LINC01484 - long intergenic non-protein coding RNA 1484 ncRNA 13-PTNLD9-TUMOR_peak_37843 chr4 7846448 7846655 + 15.65762 NA intron (NM_198595, intron 4 of 16) intron (NM_198595, intron 4 of 16) 90734 NR_026892 84740 Hs.663029 NM_032654 ENSG00000272620 AFAP1-AS1 AFAP1-AS|AFAP1AS AFAP1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_8840 chr11 3145807 3145978 + 15.65752 NA intron (NM_145638, intron 3 of 20) L2b|LINE|L2 40690 NM_020896 114879 Hs.436166 NM_020896 HPRD:09475 OSBPL5 OBPH1|ORP5 oxysterol binding protein-like 5 protein-coding 13-PTNLD9-TUMOR_peak_40966 chr5 57531212 57531462 + 15.65752 NA Intergenic Intergenic -113169 NR_104669 101928569 Hs.319708 NR_104669 ENSG00000248132 LOC101928569 - uncharacterized LOC101928569 ncRNA 13-PTNLD9-TUMOR_peak_6230 chr10 375406 375585 + 15.65752 NA exon (NM_014974, exon 30 of 37) exon (NM_014974, exon 30 of 37) 149561 NM_001202468 10771 Hs.292265 NM_006624 HPRD:09830 ZMYND11 BRAM1|BS69 zinc finger, MYND-type containing 11 protein-coding 13-PTNLD9-TUMOR_peak_19560 chr16 67089707 67089902 + 15.65752 NA intron (NM_022845, intron 3 of 5) intron (NM_022845, intron 3 of 5) 26754 NM_022845 865 Hs.460988 NM_001755 HPRD:00418 CBFB PEBP2B core-binding factor, beta subunit protein-coding 13-PTNLD9-TUMOR_peak_24667 chr19 32864737 32864977 + 15.65752 NA intron (NM_001136156, intron 5 of 6) Tigger6a|DNA|TcMar-Tigger 28343 NM_001136156 22847 Hs.205392 NM_014910 HPRD:11722 ZNF507 - zinc finger protein 507 protein-coding 13-PTNLD9-TUMOR_peak_8103 chr10 99167273 99167435 + 15.65752 NA Intergenic Intergenic -6227 NM_001145114 23223 Hs.434251 NM_015179 HPRD:11103 RRP12 KIAA0690 ribosomal RNA processing 12 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_47899 chr7 73265188 73265472 + 15.65364 NA Intergenic Intergenic -8475 NM_152559 155368 Hs.647042 NM_152559 HPRD:15661 WBSCR27 - Williams Beuren syndrome chromosome region 27 protein-coding 13-PTNLD9-TUMOR_peak_38845 chr4 88939140 88939365 + 15.65267 NA intron (NM_000297, intron 1 of 14) intron (NM_000297, intron 1 of 14) 10453 NM_000297 5311 Hs.181272 NM_000297 HPRD:01437 PKD2 APKD2|PC2|PKD4|Pc-2|TRPP2 polycystic kidney disease 2 (autosomal dominant) protein-coding 13-PTNLD9-TUMOR_peak_36521 chr3 157077992 157078188 + 15.65267 NA intron (NM_001167911, intron 9 of 12) intron (NM_001167911, intron 9 of 12) -76490 NM_002852 5806 Hs.591286 NM_002852 HPRD:03928 PTX3 TNFAIP5|TSG-14 pentraxin 3, long protein-coding 13-PTNLD9-TUMOR_peak_19873 chr16 81208947 81209159 + 15.65267 NA intron (NM_001076780, intron 15 of 17) L2c|LINE|L2 5914 NM_001278423 114780 Hs.413525 NM_052892 HPRD:06990 PKD1L2 PC1L2 polycystic kidney disease 1-like 2 protein-coding 13-PTNLD9-TUMOR_peak_18049 chr15 98568535 98568895 + 15.65267 NA Intergenic Intergenic 63267 NR_120325 101927332 NR_120325 LOC101927332 - uncharacterized LOC101927332 ncRNA 13-PTNLD9-TUMOR_peak_24126 chr19 13371999 13372172 + 15.65267 NA intron (NM_001174080, intron 26 of 46) intron (NM_001174080, intron 26 of 46) 110803 NM_004907 9592 Hs.501629 NM_004907 HPRD:09997 IER2 ETR101 immediate early response 2 protein-coding 13-PTNLD9-TUMOR_peak_5870 chr1 233656384 233656547 + 15.65267 NA Intergenic MLT2B3|LTR|ERVL -93285 NM_002245 3775 Hs.208544 NM_002245 HPRD:03447 KCNK1 DPK|HOHO|K2P1|K2p1.1|KCNO1|TWIK-1|TWIK1 potassium channel, subfamily K, member 1 protein-coding 13-PTNLD9-TUMOR_peak_43551 chr6 3797906 3798184 + 15.64857 NA Intergenic Intergenic -45799 NM_183373 221749 Hs.484500 NM_183373 HPRD:12854 PXDC1 C6orf145 PX domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_13722 chr12 107909356 107909613 + 15.64857 NA intron (NM_001018072, intron 1 of 16) intron (NM_001018072, intron 1 of 16) -65150 NM_001017523 121551 Hs.271272 NM_152322 HPRD:12536 BTBD11 ABTB2B BTB (POZ) domain containing 11 protein-coding 13-PTNLD9-TUMOR_peak_18946 chr16 29622282 29622623 + 15.64212 NA Intergenic Intergenic 2586 NR_002593 81893 Hs.677169 NM_031211 HPRD:13964 SLC7A5P1 DC49|LAT1-3TM|MLAS|hLAT1-3TM solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_941 chr1 31847742 31847939 + 15.63930 NA Intergenic Intergenic -1917 NM_004102 2170 Hs.657242 NM_004102 FABP3 FABP11|H-FABP|M-FABP|MDGI|O-FABP fatty acid binding protein 3, muscle and heart (mammary-derived growth inhibitor) protein-coding 13-PTNLD9-TUMOR_peak_35765 chr3 127174510 127174702 + 15.63930 NA Intergenic CpG -65093 NR_110147 101927123 Hs.526761 NR_110147 ENSG00000244215 LOC101927123 - uncharacterized LOC101927123 ncRNA 13-PTNLD9-TUMOR_peak_6477 chr10 11928954 11929422 + 15.63930 NA intron (NR_038222, intron 2 of 5) intron (NR_038222, intron 2 of 5) 7521 NR_038222 219731 Hs.576787 NR_038222 ENSG00000225778 PROSER2-AS1 - PROSER2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_22039 chr17 73904361 73904537 + 15.63601 NA Intergenic Intergenic -3268 NM_032478 64978 Hs.442609 NM_032478 HPRD:14758 MRPL38 L38MT|MRP-L3|MRP-L38|RPML3 mitochondrial ribosomal protein L38 protein-coding 13-PTNLD9-TUMOR_peak_27875 chr2 102680720 102680984 + 15.63464 NA Intergenic Intergenic -5984 NM_001288706 3554 Hs.701982 NM_000877 HPRD:00994 IL1R1 CD121A|D2S1473|IL-1R-alpha|IL1R|IL1RA|P80 interleukin 1 receptor, type I protein-coding 13-PTNLD9-TUMOR_peak_51497 chr8 103906723 103907046 + 15.63464 NA Intergenic Intergenic -30487 NM_015878 51582 Hs.459106 NM_015878 HPRD:07443 AZIN1 OAZI|OAZIN|ODC1L antizyme inhibitor 1 protein-coding 13-PTNLD9-TUMOR_peak_27368 chr2 80329203 80329501 + 15.63464 NA intron (NM_001282597, intron 7 of 18) intron (NM_001282597, intron 7 of 18) 202135 NM_178839 347730 Hs.591580 NM_178839 HPRD:14323 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 13-PTNLD9-TUMOR_peak_3622 chr1 151509663 151509827 + 15.62693 NA exon (NM_020770, exon 21 of 21) exon (NM_020770, exon 21 of 21) -3036 NM_001126337 7286 Hs.489922 NM_020127 HPRD:02516 TUFT1 - tuftelin 1 protein-coding 13-PTNLD9-TUMOR_peak_25194 chr19 47121966 47122369 + 15.62462 NA Intergenic Intergenic 6187 NM_000960 5739 Hs.458324 NM_000960 HPRD:08959 PTGIR IP|PRIPR prostaglandin I2 (prostacyclin) receptor (IP) protein-coding 13-PTNLD9-TUMOR_peak_32397 chr21 43098532 43098909 + 15.62462 NA promoter-TSS (NR_024367) promoter-TSS (NR_024367) -742 NR_024367 54090 Hs.570442 NR_024367 LINC00111 C21orf21|NCRNA00111 long intergenic non-protein coding RNA 111 ncRNA 13-PTNLD9-TUMOR_peak_22014 chr17 73685623 73685793 + 15.62029 NA intron (NM_013260, intron 3 of 10) intron (NM_013260, intron 3 of 10) 22309 NM_013260 29115 Hs.655088 NM_013260 HPRD:17094 SAP30BP HCNGP|HTRG|HTRP SAP30 binding protein protein-coding 13-PTNLD9-TUMOR_peak_18668 chr16 18995146 18995374 + 15.61276 NA promoter-TSS (NM_024847) promoter-TSS (NM_024847) 4 NM_001300732 79905 Hs.187377 NM_024847 HPRD:15517 TMC7 - transmembrane channel-like 7 protein-coding 13-PTNLD9-TUMOR_peak_26142 chr2 11837541 11837900 + 15.61276 NA intron (NM_001261428, intron 1 of 21) intron (NM_001261428, intron 1 of 21) 20015 NM_001261428 23175 Hs.467740 NM_145693 HPRD:09271 LPIN1 PAP1 lipin 1 protein-coding 13-PTNLD9-TUMOR_peak_34053 chr3 23136697 23136864 + 15.61276 NA Intergenic Intergenic -108004 NM_152653 7325 Hs.475688 NM_152653 UBE2E2 UBCH8 ubiquitin-conjugating enzyme E2E 2 protein-coding 13-PTNLD9-TUMOR_peak_6657 chr10 22716167 22716306 + 15.61276 NA Intergenic Intergenic 10622 NR_036533 100499489 Hs.7444 NR_036533 LOC100499489 - uncharacterized LOC100499489 ncRNA 13-PTNLD9-TUMOR_peak_16273 chr14 75348492 75348629 + 15.61276 NA promoter-TSS (NR_033814) promoter-TSS (NR_033814) -34 NR_045209 1743 Hs.525459 NM_001933 HPRD:00520 DLST DLTS dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex) protein-coding 13-PTNLD9-TUMOR_peak_36861 chr3 178755196 178755442 + 15.61276 NA intron (NM_022470, intron 2 of 5) MER52A|LTR|ERV1 34337 NM_152240 64393 Hs.371609 NM_022470 HPRD:07343 ZMAT3 PAG608|WIG-1|WIG1 zinc finger, matrin-type 3 protein-coding 13-PTNLD9-TUMOR_peak_31491 chr20 50063345 50063512 + 15.61276 NA intron (NM_001258296, intron 6 of 10) intron (NM_001258296, intron 6 of 10) 6086 NR_036162 100422889 NR_036162 MIR3194 - microRNA 3194 ncRNA 13-PTNLD9-TUMOR_peak_26296 chr2 23604037 23604273 + 15.61276 NA Intergenic L2b|LINE|L2 -4143 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch-like family member 29 protein-coding 13-PTNLD9-TUMOR_peak_47522 chr7 54899563 54899773 + 15.61229 NA Intergenic MER44B|DNA|TcMar-Tigger 72662 NR_110040 100996654 Hs.127991 NR_110040 LOC100996654 - uncharacterized LOC100996654 ncRNA 13-PTNLD9-TUMOR_peak_20765 chr17 27073111 27073382 + 15.59984 NA intron (NM_004295, intron 1 of 6) intron (NM_004295, intron 1 of 6) 2223 NM_004295 9618 Hs.8375 NM_004295 HPRD:03915 TRAF4 CART1|MLN62|RNF83 TNF receptor-associated factor 4 protein-coding 13-PTNLD9-TUMOR_peak_54151 chr9 100287765 100288072 + 15.59734 NA intron (NM_001166116, intron 2 of 9) ERVL-B4-int|LTR|ERVL 23997 NM_003275 7111 Hs.404289 NM_003275 HPRD:01838 TMOD1 D9S57E|ETMOD|TMOD tropomodulin 1 protein-coding 13-PTNLD9-TUMOR_peak_39922 chr4 182597795 182598051 + 15.59526 NA Intergenic Intergenic 467745 NR_027107 90768 Hs.175465 NM_178838 MGC45800 - uncharacterized LOC90768 ncRNA 13-PTNLD9-TUMOR_peak_14423 chr13 23539413 23539761 + 15.59526 NA Intergenic Intergenic -67267 NR_033774 646201 Hs.729338 NR_033774 BASP1P1 - brain abundant, membrane attached signal protein 1 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_46836 chr7 6556095 6556330 + 15.59526 NA intron (NM_001145118, intron 7 of 21) LTR13_|LTR|ERVK -32363 NM_006854 11014 Hs.654552 NM_006854 HPRD:06598 KDELR2 ELP-1|ERD2.2 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2 protein-coding 13-PTNLD9-TUMOR_peak_42316 chr5 139691650 139691954 + 15.59526 NA Intergenic Intergenic -9113 NM_002622 5201 Hs.483564 NM_002622 HPRD:05357 PFDN1 PDF|PFD1 prefoldin subunit 1 protein-coding 13-PTNLD9-TUMOR_peak_33560 chr3 3347592 3347883 + 15.59526 NA Intergenic Intergenic -126336 NM_001173482 51185 Hs.18925 NM_016302 HPRD:16750 CRBN MRT2|MRT2A cereblon protein-coding 13-PTNLD9-TUMOR_peak_3012 chr1 117315293 117315625 + 15.59526 NA Intergenic Intergenic 18373 NM_001767 914 Hs.523500 NM_001767 HPRD:01750 CD2 LFA-2|SRBC|T11 CD2 molecule protein-coding 13-PTNLD9-TUMOR_peak_17571 chr15 70787211 70787500 + 15.59526 NA Intergenic Intergenic 207265 NM_001008224 55075 Hs.108049 NM_018003 HPRD:11657 UACA NUCLING uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding 13-PTNLD9-TUMOR_peak_37903 chr4 8582387 8582610 + 15.59526 NA 5' UTR (NM_080819, exon 1 of 3) 5' UTR (NM_080819, exon 1 of 3) 281 NM_080819 27201 Hs.740355 NM_080819 GPR78 - G protein-coupled receptor 78 protein-coding 13-PTNLD9-TUMOR_peak_9522 chr11 34689715 34689991 + 15.58772 NA Intergenic Intergenic 35842 NM_001206616 26298 Hs.653859 NM_012153 EHF ESE3|ESE3B|ESEJ ets homologous factor protein-coding 13-PTNLD9-TUMOR_peak_22454 chr18 3104296 3104460 + 15.58772 NA intron (NM_003803, intron 22 of 37) intron (NM_003803, intron 22 of 37) -92433 NM_014646 9663 Hs.132342 NM_014646 HPRD:16114 LPIN2 - lipin 2 protein-coding 13-PTNLD9-TUMOR_peak_42597 chr5 149178770 149178913 + 15.58772 NA intron (NM_001172699, intron 1 of 10) intron (NM_001172699, intron 1 of 10) 27338 NM_001172699 133522 Hs.483816 NM_133263 HPRD:10594 PPARGC1B ERRL1|PERC|PGC-1(beta)|PGC1B peroxisome proliferator-activated receptor gamma, coactivator 1 beta protein-coding 13-PTNLD9-TUMOR_peak_53712 chr9 80422234 80422367 + 15.58772 NA intron (NM_002072, intron 3 of 6) L4|LINE|RTE -159068 NM_004297 9630 Hs.657795 NM_004297 HPRD:05095 GNA14 - guanine nucleotide binding protein (G protein), alpha 14 protein-coding 13-PTNLD9-TUMOR_peak_27410 chr2 85486206 85486392 + 15.58634 NA intron (NM_031283, intron 3 of 11) L2a|LINE|L2 69120 NM_001206840 10618 Hs.593382 NM_006464 HPRD:04343 TGOLN2 TGN38|TGN46|TGN48|TGN51|TTGN2 trans-golgi network protein 2 protein-coding 13-PTNLD9-TUMOR_peak_37286 chr3 193664742 193665158 + 15.58634 NA Intergenic Intergenic 47077 NR_027764 100128023 Hs.730112 NR_027764 DPPA2P3 - developmental pluripotency associated 2 pseudogene 3 pseudo 13-PTNLD9-TUMOR_peak_31956 chr21 16596710 16597034 + 15.58634 NA Intergenic MLT2A2|LTR|ERVL -159746 NM_003489 8204 Hs.155017 NM_003489 HPRD:03927 NRIP1 RIP140 nuclear receptor interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_47095 chr7 25087350 25087541 + 15.58603 NA Intergenic L1HS|LINE|L1 -67614 NM_015550 26031 Hs.520259 NM_015550 HPRD:09474 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein-like 3 protein-coding 13-PTNLD9-TUMOR_peak_17383 chr15 60383491 60383685 + 15.58603 NA Intergenic Intergenic 87167 NM_012182 27023 Hs.734475 NM_012182 HPRD:07017 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 13-PTNLD9-TUMOR_peak_9295 chr11 20133809 20134018 + 15.58603 NA intron (NM_001111019, intron 26 of 27) intron (NM_001111019, intron 26 of 27) 47957 NM_001029865 120237 Hs.558604 NM_001029865 HPRD:18721 DBX1 - developing brain homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_10469 chr11 69863017 69863290 + 15.58603 NA Intergenic L2a|LINE|L2 46877 NR_120530 101928443 Hs.313468 NR_120529 ENSG00000248844 LOC101928443 - uncharacterized LOC101928443 ncRNA 13-PTNLD9-TUMOR_peak_41761 chr5 112418066 112418237 + 15.58603 NA intron (NM_002387, intron 9 of 16) intron (NM_002387, intron 9 of 16) 105744 NM_001242377 167227 Hs.443875 NM_152624 HPRD:13125 DCP2 NUDT20 decapping mRNA 2 protein-coding 13-PTNLD9-TUMOR_peak_6829 chr10 30654246 30654454 + 15.58603 NA non-coding (NR_120609, exon 9 of 12) non-coding (NR_120609, exon 9 of 12) 3244 NR_106985 102466227 NR_106985 MIR7162 hsa-mir-7162 microRNA 7162 ncRNA 13-PTNLD9-TUMOR_peak_32116 chr21 32739182 32739372 + 15.58603 NA intron (NM_003253, intron 2 of 28) intron (NM_003253, intron 2 of 28) 192013 NM_003253 7074 Hs.517228 NM_003253 HPRD:02820 TIAM1 - T-cell lymphoma invasion and metastasis 1 protein-coding 13-PTNLD9-TUMOR_peak_42933 chr5 168569333 168569530 + 15.58603 NA intron (NM_003062, intron 4 of 35) intron (NM_003062, intron 4 of 35) 121267 NR_030311 693170 NR_030311 MIR585 MIRN585|hsa-mir-585 microRNA 585 ncRNA 13-PTNLD9-TUMOR_peak_10626 chr11 74384057 74384617 + 15.58603 NA Intergenic Intergenic 47045 NR_039845 100616402 NR_039845 MIR4696 - microRNA 4696 ncRNA 13-PTNLD9-TUMOR_peak_21999 chr17 73527909 73528049 + 15.58603 NA intron (NM_001015002, intron 1 of 9) intron (NM_001015002, intron 1 of 9) 6196 NM_001031803 3993 Hs.514477 NM_004524 HPRD:10041 LLGL2 HGL|LGL2 lethal giant larvae homolog 2 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_20793 chr17 28059649 28060002 + 15.58603 NA intron (NM_001282130, intron 2 of 7) intron (NM_001282130, intron 2 of 7) 28625 NM_001282131 85464 Hs.654754 NM_033389 HPRD:09487 SSH2 SSH-2|SSH-2L slingshot protein phosphatase 2 protein-coding 13-PTNLD9-TUMOR_peak_48472 chr7 99496540 99496886 + 15.56857 NA intron (NM_033091, intron 5 of 5) LTR32|LTR|ERVL 20510 NM_033017 89122 Hs.50749 NM_033017 HPRD:15556 TRIM4 RNF87 tripartite motif containing 4 protein-coding 13-PTNLD9-TUMOR_peak_45071 chr6 43149801 43150068 + 15.56090 NA promoter-TSS (NM_015089) promoter-TSS (NM_015089) 12 NM_015089 23113 Hs.485434 NM_015089 HPRD:06317 CUL9 H7AP1|PARC cullin 9 protein-coding 13-PTNLD9-TUMOR_peak_22129 chr17 75830723 75830845 + 15.56090 NA Intergenic Intergenic 49385 NR_028337 400624 Hs.514521 NM_001001685 FLJ45079 - FLJ45079 protein ncRNA 13-PTNLD9-TUMOR_peak_24853 chr19 37959954 37960283 + 15.56090 NA 5' UTR (NM_144694, exon 1 of 5) 5' UTR (NM_144694, exon 1 of 5) 158 NM_144694 148268 Hs.350875 NM_144694 HPRD:11729 ZNF570 - zinc finger protein 570 protein-coding 13-PTNLD9-TUMOR_peak_35870 chr3 129514558 129514725 + 15.55901 NA intron (NM_001017395, intron 3 of 5) MER44B|DNA|TcMar-Tigger 84761 NM_001017395 23023 Hs.477547 NM_015008 HPRD:15518 TMCC1 - transmembrane and coiled-coil domain family 1 protein-coding 13-PTNLD9-TUMOR_peak_26035 chr2 9304044 9304326 + 15.55644 NA Intergenic Intergenic -42709 NM_001135191 8853 Hs.555902 NM_003887 HPRD:04820 ASAP2 AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 protein-coding 13-PTNLD9-TUMOR_peak_20931 chr17 36388955 36389198 + 15.54696 NA intron (NR_036750, intron 2 of 11) Tigger7|DNA|TcMar-Tigger 24180 NR_036750 440434 Hs.443837 NR_036750 ENSG00000174093 LOC440434 - aminopeptidase puromycin sensitive pseudogene pseudo 13-PTNLD9-TUMOR_peak_36333 chr3 149102875 149103083 + 15.54337 NA intron (NR_109809, intron 2 of 2) MIRb|SINE|MIR -7411 NM_014220 4071 Hs.351316 NM_014220 HPRD:01854 TM4SF1 H-L6|L6|M3S1|TAAL6 transmembrane 4 L six family member 1 protein-coding 13-PTNLD9-TUMOR_peak_10437 chr11 69064704 69065125 + 15.54337 NA TTS (NM_138768) TTS (NM_138768) 3309 NM_001300924 26579 Hs.523848 NM_138768 HPRD:16130 MYEOV OCIM myeloma overexpressed protein-coding 13-PTNLD9-TUMOR_peak_4630 chr1 181088499 181088797 + 15.53894 NA Intergenic Intergenic 31010 NM_016545 51278 Hs.15725 NM_016545 HPRD:06210 IER5 SBBI48 immediate early response 5 protein-coding 13-PTNLD9-TUMOR_peak_21835 chr17 65242802 65243014 + 15.53868 NA Intergenic Intergenic -1589 NM_014877 9931 Hs.370140 NM_014877 HPRD:10452 HELZ DHRC|DRHC|HUMORF5 helicase with zinc finger protein-coding 13-PTNLD9-TUMOR_peak_3560 chr1 150508536 150508786 + 15.53868 NA Intergenic L2b|LINE|L2 -13184 NM_001288608 54507 Hs.516243 NM_019032 HPRD:08583 ADAMTSL4 ADAMTSL-4|ECTOL2|TSRC1 ADAMTS-like 4 protein-coding 13-PTNLD9-TUMOR_peak_14554 chr13 32519816 32519997 + 15.53868 NA intron (NR_027062, intron 1 of 3) intron (NR_027062, intron 1 of 3) -85531 NM_023037 10129 Hs.507669 NM_023037 HPRD:10821 FRY 13CDNA73|214K23.2|C13orf14|CG003|bA207N4.2|bA37E23.1 furry homolog (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_51569 chr8 107916466 107916626 + 15.53868 NA Intergenic Intergenic -134074 NM_139166 137735 Hs.374668 NM_139166 HPRD:11608 ABRA STARS actin-binding Rho activating protein protein-coding 13-PTNLD9-TUMOR_peak_17789 chr15 82554904 82555198 + 15.53868 NA promoter-TSS (NM_024580) promoter-TSS (NM_024580) 53 NM_024580 79631 Hs.459114 NM_024580 HPRD:07812 EFTUD1 FAM42A|HsT19294|RIA1 elongation factor Tu GTP binding domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_9644 chr11 44964751 44964932 + 15.52394 NA intron (NM_001258323, intron 1 of 7) intron (NM_001258323, intron 1 of 7) 6918 NM_001258320 9537 Hs.554791 NM_006034 HPRD:15545 TP53I11 PIG11 tumor protein p53 inducible protein 11 protein-coding 13-PTNLD9-TUMOR_peak_5027 chr1 202252548 202252888 + 15.52394 NA intron (NM_001017403, intron 6 of 17) intron (NM_001017403, intron 6 of 17) 58376 NM_014176 29089 Hs.5199 NM_014176 HPRD:13704 UBE2T PIG50 ubiquitin-conjugating enzyme E2T (putative) protein-coding 13-PTNLD9-TUMOR_peak_20522 chr17 15554976 15555299 + 15.52394 NA 5' UTR (NM_006470, exon 4 of 9) 5' UTR (NM_006470, exon 4 of 9) 31056 NM_006470 10626 Hs.123534 NM_006470 HPRD:15552 TRIM16 EBBP tripartite motif containing 16 protein-coding 13-PTNLD9-TUMOR_peak_28864 chr2 160353823 160354003 + 15.52343 NA intron (NM_001289975, intron 2 of 35) intron (NM_001289975, intron 2 of 35) -117892 NR_110588 643072 Hs.632541 NR_110587 LOC643072 - uncharacterized LOC643072 ncRNA 13-PTNLD9-TUMOR_peak_18784 chr16 23481245 23481478 + 15.52343 NA exon (NM_015044, exon 15 of 17) exon (NM_015044, exon 15 of 17) -16849 NM_153603 91949 Hs.185807 NM_153603 HPRD:07373 COG7 CDG2E component of oligomeric golgi complex 7 protein-coding 13-PTNLD9-TUMOR_peak_35439 chr3 114425538 114425734 + 15.52343 NA intron (NM_015642, intron 4 of 9) intron (NM_015642, intron 4 of 9) 36736 NR_039959 100616166 NR_039959 miRBase:MI0017443 MIR4796 - microRNA 4796 ncRNA 13-PTNLD9-TUMOR_peak_22420 chr18 1521672 1521824 + 15.52343 NA Intergenic L1PA2|LINE|L1 -162118 NR_023926 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 13-PTNLD9-TUMOR_peak_10578 chr11 72960431 72960641 + 15.52343 NA Intergenic Intergenic -15014 NM_001277205 5031 Hs.16362 NM_004154 HPRD:03906 P2RY6 P2Y6 pyrimidinergic receptor P2Y, G-protein coupled, 6 protein-coding 13-PTNLD9-TUMOR_peak_26200 chr2 16590039 16590180 + 15.52343 NA Intergenic Intergenic 257025 NM_030797 81553 Hs.467769 NM_030797 HPRD:07729 FAM49A - family with sequence similarity 49, member A protein-coding 13-PTNLD9-TUMOR_peak_13556 chr12 98812410 98812763 + 15.52343 NA Intergenic Intergenic 38337 NR_033801 121456 Hs.620643 NR_033801 ENSG00000227825 SLC9A7P1 - solute carrier family 9, subfamily A (NHE7, cation proton antiporter 7), member 7 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_45607 chr6 83041070 83041304 + 15.52343 NA Intergenic Intergenic -31736 NM_006670 7162 Hs.82128 NM_006670 HPRD:01837 TPBG 5T4|5T4AG|M6P1|WAIF1 trophoblast glycoprotein protein-coding 13-PTNLD9-TUMOR_peak_46366 chr6 155318094 155318342 + 15.52343 NA Intergenic L2c|LINE|L2 -93205 NM_012454 26230 Hs.586279 NM_012454 HPRD:05273 TIAM2 STEF|TIAM-2 T-cell lymphoma invasion and metastasis 2 protein-coding 13-PTNLD9-TUMOR_peak_41108 chr5 67175531 67175765 + 15.51942 NA Intergenic Intergenic -310056 NR_105003 102467655 Hs.544102 NR_105003 LOC102467655 - uncharacterized LOC102467655 ncRNA 13-PTNLD9-TUMOR_peak_10977 chr11 95724370 95724523 + 15.51942 NA intron (NM_032427, intron 3 of 4) intron (NM_032427, intron 3 of 4) -67075 NM_016156 8898 Hs.181326 NM_016156 HPRD:04650 MTMR2 CMT4B|CMT4B1 myotubularin related protein 2 protein-coding 13-PTNLD9-TUMOR_peak_32936 chr22 24282480 24282647 + 15.51942 NA Intergenic Intergenic 20805 NM_001080843 653689 Hs.656498 NM_001080843 ENSG00000133433 GSTT2B GSTT2P glutathione S-transferase theta 2B (gene/pseudogene) protein-coding 13-PTNLD9-TUMOR_peak_53553 chr9 71746703 71746872 + 15.51942 NA intron (NM_001170414, intron 1 of 21) MER68|LTR|ERVL 10607 NM_001170414 9414 Hs.50382 NM_004817 HPRD:06369 TJP2 C9DUPq21.11|DFNA51|DUP9q21.11|PFIC4|X104|ZO2 tight junction protein 2 protein-coding 13-PTNLD9-TUMOR_peak_34071 chr3 23918917 23919139 + 15.51942 NA intron (NM_001202476, intron 2 of 4) MER20|DNA|hAT-Charlie -39267 NM_002948 6138 Hs.381219 NM_002948 HPRD:16043 RPL15 DBA12|EC45|L15|RPL10|RPLY10|RPYL10 ribosomal protein L15 protein-coding 13-PTNLD9-TUMOR_peak_33963 chr3 16190428 16190698 + 15.51942 NA Intergenic Intergenic -25621 NM_054110 117248 Hs.411308 NM_054110 HPRD:13563 GALNT15 GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5 polypeptide N-acetylgalactosaminyltransferase 15 protein-coding 13-PTNLD9-TUMOR_peak_48715 chr7 104865794 104865968 + 15.51942 NA intron (NM_182692, intron 2 of 15) Helitron3Na_Mam|RC|Helitron 43643 NM_182691 6733 Hs.285197 NM_182691 HPRD:04280 SRPK2 SFRSK2 SRSF protein kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_11565 chr11 126787788 126788013 + 15.51942 NA intron (NM_001301097, intron 1 of 15) intron (NM_001301097, intron 1 of 15) -22742 NR_046986 100874251 Hs.319053 NR_046986 ENSG00000254960 KIRREL3-AS2 - KIRREL3 antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_1610 chr1 46600502 46600875 + 15.51321 NA Intergenic AmnSINE1|SINE|Deu -1980 NM_001114172 8503 Hs.655387 NM_003629 HPRD:05831 PIK3R3 p55|p55-GAMMA phosphoinositide-3-kinase, regulatory subunit 3 (gamma) protein-coding 13-PTNLD9-TUMOR_peak_24904 chr19 39127570 39127870 + 15.50910 NA TTS (NM_001300992) TTS (NM_001300992) -10547 NM_004924 81 Hs.270291 NM_004924 ACTN4 ACTININ-4|FSGS|FSGS1 actinin, alpha 4 protein-coding 13-PTNLD9-TUMOR_peak_46325 chr6 151605240 151605469 + 15.50910 NA intron (NM_005100, intron 2 of 4) intron (NM_005100, intron 2 of 4) -41312 NM_144497 9590 Hs.371240 NM_005100 HPRD:05263 AKAP12 AKAP250|SSeCKS A kinase (PRKA) anchor protein 12 protein-coding 13-PTNLD9-TUMOR_peak_23068 chr18 44257602 44257883 + 15.50884 NA Intergenic Intergenic -20746 NM_144612 125336 Hs.345877 NM_144612 HPRD:08316 LOXHD1 DFNB77|LH2D1 lipoxygenase homology domains 1 protein-coding 13-PTNLD9-TUMOR_peak_24185 chr19 14587598 14587833 + 15.49680 NA TTS (NM_202470) TTS (NM_202470) -1541 NM_000955 5731 Hs.159360 NM_000955 HPRD:08903 PTGER1 EP1 prostaglandin E receptor 1 (subtype EP1), 42kDa protein-coding 13-PTNLD9-TUMOR_peak_48956 chr7 127761827 127762067 + 15.49074 NA Intergenic Intergenic 40034 NR_030324 693178 NR_030324 MIR593 MIRN593|hsa-mir-593 microRNA 593 ncRNA 13-PTNLD9-TUMOR_peak_54667 chr9 124308344 124308637 + 15.49074 NA Intergenic Intergenic -20891 NM_032552 153090 Hs.522378 NM_032552 HPRD:09903 DAB2IP AF9Q34|AIP-1|AIP1|DIP1/2 DAB2 interacting protein protein-coding 13-PTNLD9-TUMOR_peak_16146 chr14 69545911 69546508 + 15.49074 NA intron (NM_001284206, intron 6 of 8) intron (NM_001284206, intron 6 of 8) 73107 NM_001284207 8816 Hs.509780 NM_003861 HPRD:16032 DCAF5 BCRG2|BCRP2|D14S1461E|WDR22 DDB1 and CUL4 associated factor 5 protein-coding 13-PTNLD9-TUMOR_peak_18519 chr16 11427638 11427908 + 15.49074 NA Intergenic LTR16A|LTR|ERVL -11538 NM_152308 116028 Hs.347524 NM_152308 HPRD:14497 RMI2 BLAP18|C16orf75 RecQ mediated genome instability 2 protein-coding 13-PTNLD9-TUMOR_peak_41052 chr5 64064348 64064788 + 15.49074 NA promoter-TSS (NM_001297644) promoter-TSS (NM_001297644) -72 NM_173829 285672 Hs.69504 NM_173829 HPRD:08210 SREK1IP1 P18SRP|SFRS12IP1 SREK1-interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_56609 chrX 149862837 149863072 + 15.49074 NA intron (NM_003828, intron 1 of 15) intron (NM_003828, intron 1 of 15) 1085 NM_003828 8776 Hs.347187 NM_003828 HPRD:02163 MTMR1 - myotubularin related protein 1 protein-coding 13-PTNLD9-TUMOR_peak_30934 chr20 35456389 35456611 + 15.48534 NA intron (NM_080627, intron 3 of 14) intron (NM_080627, intron 3 of 14) 31776 NM_199181 140710 Hs.460807 NM_080627 HPRD:11116 SOGA1 C20orf117|KIAA0889|SOGA suppressor of glucose, autophagy associated 1 protein-coding 13-PTNLD9-TUMOR_peak_31541 chr20 51819455 51819658 + 15.48234 NA intron (NM_001193421, intron 1 of 2) intron (NM_001193421, intron 1 of 2) 17734 NM_001193421 128553 Hs.473117 NM_173485 HPRD:10730 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 13-PTNLD9-TUMOR_peak_47276 chr7 39760261 39760433 + 15.48234 NA Intergenic MER4D1|LTR|ERV1 -12820 NR_026999 349114 Hs.414183 NM_198284 LINC00265 NCRNA00265 long intergenic non-protein coding RNA 265 ncRNA 13-PTNLD9-TUMOR_peak_15389 chr14 24768206 24768454 + 15.48013 NA promoter-TSS (NM_174913) promoter-TSS (NM_174913) 336 NM_138452 115817 Hs.348350 NM_138452 HPRD:09914 DHRS1 SDR19C1 dehydrogenase/reductase (SDR family) member 1 protein-coding 13-PTNLD9-TUMOR_peak_3654 chr1 151945528 151945708 + 15.48013 NA Intergenic Intergenic 21096 NM_002966 6281 Hs.143873 NM_002966 HPRD:00232 S100A10 42C|ANX2L|ANX2LG|CAL1L|CLP11|Ca[1]|GP11|P11|p10 S100 calcium binding protein A10 protein-coding 13-PTNLD9-TUMOR_peak_48200 chr7 84816115 84816340 + 15.47376 NA Intergenic CpG -64980 NM_152754 223117 Hs.201340 NM_152754 HPRD:15321 SEMA3D Sema-Z2|coll-2 sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D protein-coding 13-PTNLD9-TUMOR_peak_51992 chr8 128821999 128822167 + 15.47376 NA Intergenic Intergenic 13875 NR_031609 100302185 NR_031609 miRBase:MI0006337 MIR1204 hsa-mir-1204 microRNA 1204 ncRNA 13-PTNLD9-TUMOR_peak_3958 chr1 156629856 156630179 + 15.47376 NA TTS (NM_021948) TTS (NM_021948) 17172 NM_006617 10763 Hs.527971 NM_006617 HPRD:09020 NES - nestin protein-coding 13-PTNLD9-TUMOR_peak_3514 chr1 149813243 149813653 + 15.47293 NA promoter-TSS (NM_021059) promoter-TSS (NM_021059) -683 NM_001005464 333932 Hs.647745 NM_001005464 HIST2H3A H3/n|H3/o histone cluster 2, H3a protein-coding 13-PTNLD9-TUMOR_peak_50112 chr8 12465134 12465371 + 15.47001 NA intron (NR_047662, intron 3 of 8) intron (NR_047662, intron 3 of 8) 57868 NR_047662 729732 Hs.322761 NR_047662 LOC729732 - uncharacterized LOC729732 ncRNA 13-PTNLD9-TUMOR_peak_32557 chr21 46347936 46348187 + 15.46698 NA non-coding (NR_038316, exon 3 of 3) non-coding (NR_038316, exon 3 of 3) 692 NM_001127491 3689 Hs.375957 NM_000211 HPRD:02506 ITGB2 CD18|LAD|LCAMB|LFA-1|MAC-1|MF17|MFI7 integrin, beta 2 (complement component 3 receptor 3 and 4 subunit) protein-coding 13-PTNLD9-TUMOR_peak_28284 chr2 121427173 121427504 + 15.46336 NA Intergenic Intergenic -127529 NM_005270 2736 Hs.111867 NM_005270 HPRD:01312 GLI2 HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 13-PTNLD9-TUMOR_peak_27953 chr2 109268906 109269298 + 15.46301 NA intron (NM_001193484, intron 1 of 9) L1MD2|LINE|L1 -2166 NM_001193485 3987 Hs.597715 NM_004987 HPRD:03978 LIMS1 PINCH|PINCH-1|PINCH1 LIM and senescent cell antigen-like domains 1 protein-coding 13-PTNLD9-TUMOR_peak_27385 chr2 84474741 84475041 + 15.46159 NA Intergenic Intergenic -42915 NR_003663 388965 Hs.664098 NM_001013648 HPRD:18390 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_54456 chr9 114774368 114774788 + 15.46159 NA intron (NR_036085, intron 3 of 3) intron (NR_036085, intron 3 of 3) 80198 NR_039814 100616114 NR_039814 MIR4668 - microRNA 4668 ncRNA 13-PTNLD9-TUMOR_peak_45837 chr6 107199573 107199827 + 15.46159 NA intron (NR_033557, intron 1 of 6) intron (NR_033557, intron 1 of 6) 35600 NR_033557 100422737 Hs.634681 NR_033557 ENSG00000235142 LOC100422737 - uncharacterized LOC100422737 ncRNA 13-PTNLD9-TUMOR_peak_26732 chr2 43596186 43596452 + 15.46159 NA intron (NM_022065, intron 29 of 37) intron (NM_022065, intron 29 of 37) 141969 NR_027251 100129726 Hs.194480 NM_178529 LINC01126 - long intergenic non-protein coding RNA 1126 ncRNA 13-PTNLD9-TUMOR_peak_43578 chr6 4291771 4291964 + 15.46159 NA Intergenic Tigger3b|DNA|TcMar-Tigger 155561 NR_103764 100507506 Hs.665936 NR_103764 ENSG00000234817 LOC100507506 - uncharacterized LOC100507506 ncRNA 13-PTNLD9-TUMOR_peak_26357 chr2 26497290 26497469 + 15.46159 NA intron (NM_001281512, intron 5 of 14) intron (NM_001281512, intron 5 of 14) 29763 NM_001281512 3032 Hs.515848 NM_000183 HPRD:00887 HADHB ECHB|MTPB|TP-BETA hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), beta subunit protein-coding 13-PTNLD9-TUMOR_peak_2015 chr1 62303393 62303635 + 15.46159 NA intron (NM_176877, intron 17 of 42) intron (NM_176877, intron 17 of 42) 95365 NM_176877 10207 Hs.478125 NM_005799 HPRD:04434 INADL Cipp|InaD-like|PATJ|hINADL InaD-like (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_18450 chr16 9209274 9209414 + 15.46159 NA intron (NM_014117, intron 3 of 3) intron (NM_014117, intron 3 of 3) 23807 NM_014117 29035 Hs.221497 NM_014117 C16orf72 PRO0149 chromosome 16 open reading frame 72 protein-coding 13-PTNLD9-TUMOR_peak_2565 chr1 95168088 95168257 + 15.46159 NA intron (NR_104131, intron 3 of 4) intron (NR_104131, intron 3 of 4) 117665 NR_104131 101928079 Hs.596857 NR_104131 LINC01057 - long intergenic non-protein coding RNA 1057 ncRNA 13-PTNLD9-TUMOR_peak_29926 chr2 225350184 225350382 + 15.46159 NA intron (NM_001257198, intron 13 of 15) L1P3|LINE|L1 -83572 NM_001122779 79843 Hs.147585 NM_024785 HPRD:08663 FAM124B - family with sequence similarity 124B protein-coding 13-PTNLD9-TUMOR_peak_43883 chr6 14131048 14131247 + 15.46159 NA intron (NM_001040280, intron 2 of 4) intron (NM_001040280, intron 2 of 4) 13282 NM_004233 9308 Hs.595133 NM_004233 HPRD:05170 CD83 BL11|HB15 CD83 molecule protein-coding 13-PTNLD9-TUMOR_peak_7114 chr10 42683483 42683712 + 15.45777 NA Intergenic HERVL-int|LTR|ERVL 179896 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 13-PTNLD9-TUMOR_peak_16831 chr15 26146086 26146363 + 15.45774 NA Intergenic Intergenic -1283 NR_040082 100128714 Hs.587854 NR_040082 ENSG00000206187 LOC100128714 - uncharacterized LOC100128714 ncRNA 13-PTNLD9-TUMOR_peak_47818 chr7 70773199 70773432 + 15.45774 NA promoter-TSS (NR_037477) promoter-TSS (NR_037477) -559 NR_037477 100500836 NR_037477 miRBase:MI0016419 MIR3914-1 - microRNA 3914-1 ncRNA 13-PTNLD9-TUMOR_peak_19274 chr16 48443976 48444453 + 15.45774 NA Intergenic Intergenic -24985 NM_003031 6477 Hs.706828 NM_003031 HPRD:03736 SIAH1 SIAH1A siah E3 ubiquitin protein ligase 1 protein-coding 13-PTNLD9-TUMOR_peak_9464 chr11 33703989 33704357 + 15.45774 NA Intergenic L1PB1|LINE|L1 18113 NM_001166692 100131378 Hs.709466 NM_001166692 C11orf91 - chromosome 11 open reading frame 91 protein-coding 13-PTNLD9-TUMOR_peak_44747 chr6 34890083 34890502 + 15.45774 NA intron (NM_015245, intron 1 of 23) intron (NM_015245, intron 1 of 23) 33254 NM_015245 23294 Hs.656492 NM_015245 HPRD:10610 ANKS1A ANKS1 ankyrin repeat and sterile alpha motif domain containing 1A protein-coding 13-PTNLD9-TUMOR_peak_16559 chr14 100028250 100028404 + 15.45774 NA intron (NM_001144995, intron 1 of 5) intron (NM_001144995, intron 1 of 5) 42400 NM_001144995 317762 Hs.709288 NM_001144995 ENSG00000205476 CCDC85C - coiled-coil domain containing 85C protein-coding 13-PTNLD9-TUMOR_peak_13430 chr12 85711630 85711807 + 15.45774 NA Intergenic L1PA2|LINE|L1 37682 NM_006982 8092 Hs.41683 NM_006982 HPRD:03316 ALX1 CART1|FND3|HEL23 ALX homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_4432 chr1 173159392 173159968 + 15.45774 NA intron (NM_003326, intron 1 of 2) intron (NM_003326, intron 1 of 2) 15017 NM_001297562 7292 Hs.181097 NM_003326 HPRD:04668 TNFSF4 CD134L|CD252|GP34|OX-40L|OX4OL|TXGP1 tumor necrosis factor (ligand) superfamily, member 4 protein-coding 13-PTNLD9-TUMOR_peak_49576 chr7 148959589 148959785 + 15.45190 NA intron (NM_001195220, intron 1 of 5) CpG 425 NM_001195220 100289678 Hs.490512 NM_001195220 ENSG00000204946 ZNF783 - zinc finger family member 783 protein-coding 13-PTNLD9-TUMOR_peak_4492 chr1 176210599 176210739 + 15.45110 NA Intergenic MER44D|DNA|TcMar-Tigger -34289 NM_022457 64326 Hs.523744 NM_022457 HPRD:07455 RFWD2 COP1|RNF200 ring finger and WD repeat domain 2, E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_26168 chr2 12760093 12760515 + 15.45110 NA Intergenic Intergenic -96694 NR_027303 28951 Hs.467751 NM_021643 HPRD:18224 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 13-PTNLD9-TUMOR_peak_6720 chr10 25162194 25162590 + 15.45110 NA intron (NM_001282786, intron 3 of 7) intron (NM_001282786, intron 3 of 7) 79181 NM_020200 56952 Hs.405619 NM_020200 HPRD:17917 PRTFDC1 HHGP phosphoribosyl transferase domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_35798 chr3 127889840 127889988 + 15.45110 NA intron (NM_021937, intron 1 of 6) intron (NM_021937, intron 1 of 6) 17601 NM_021937 60678 Hs.477498 NM_021937 HPRD:07409 EEFSEC EFSEC|SELB eukaryotic elongation factor, selenocysteine-tRNA-specific protein-coding 13-PTNLD9-TUMOR_peak_7257 chr10 47746769 47746990 + 15.44554 NA promoter-TSS (NM_001278923) promoter-TSS (NM_001278923) 29 NM_001098845 728113 Hs.705389 NM_001630 ENSG00000150165 ANXA8L1 ANXA8|ANXA8L2|VAC-beta|bA145E20.2 annexin A8-like 1 protein-coding 13-PTNLD9-TUMOR_peak_2357 chr1 87239411 87239555 + 15.44326 NA Intergenic Intergenic 69230 NM_001206653 51100 Hs.136309 NM_016009 HPRD:15333 SH3GLB1 Bif-1|PPP1R70|dJ612B15.2 SH3-domain GRB2-like endophilin B1 protein-coding 13-PTNLD9-TUMOR_peak_45321 chr6 52977157 52977663 + 15.44326 NA Intergenic Intergenic 36214 NM_003643 8521 Hs.28346 NM_003643 HPRD:04757 GCM1 GCMA|hGCMa glial cells missing homolog 1 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_3906 chr1 156060623 156060834 + 15.44326 NA intron (NM_001282625, intron 3 of 12) intron (NM_001282625, intron 3 of 12) 8391 NM_001282625 4000 Hs.594444 NM_005572 HPRD:01035 LMNA CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|PRO1 lamin A/C protein-coding 13-PTNLD9-TUMOR_peak_56616 chrX 150104065 150104257 + 15.44326 NA Intergenic Intergenic -36872 NM_134446 83692 Hs.522805 NM_031462 ENSG00000102181 CD99L2 CD99B|MIC2L1 CD99 molecule-like 2 protein-coding 13-PTNLD9-TUMOR_peak_4687 chr1 183063168 183063418 + 15.44326 NA intron (NM_002293, intron 1 of 27) L2a|LINE|L2 70698 NM_002293 3915 Hs.609663 NM_002293 HPRD:01030 LAMC1 LAMB2 laminin, gamma 1 (formerly LAMB2) protein-coding 13-PTNLD9-TUMOR_peak_53990 chr9 94455642 94455847 + 15.44326 NA Intergenic L2|LINE|L2 -57117 NR_037489 100500902 NR_037489 MIR3910-2 - microRNA 3910-2 ncRNA 13-PTNLD9-TUMOR_peak_11440 chr11 121335130 121335602 + 15.44250 NA intron (NM_003105, intron 1 of 47) intron (NM_003105, intron 1 of 47) 12454 NM_003105 6653 Hs.368592 NM_003105 HPRD:03595 SORL1 C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250 sortilin-related receptor, L(DLR class) A repeats containing protein-coding 13-PTNLD9-TUMOR_peak_47370 chr7 44677771 44677957 + 15.43594 NA intron (NM_001003941, intron 2 of 8) intron (NM_001003941, intron 2 of 8) 31743 NM_002541 4967 Hs.488181 NM_002541 HPRD:08938 OGDH AKGDH|E1k|OGDC oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide) protein-coding 13-PTNLD9-TUMOR_peak_51941 chr8 127546458 127546755 + 15.43594 NA Intergenic LTR26|LTR|ERV1 24105 NM_174911 157638 Hs.741352 NM_174911 HPRD:11403 FAM84B BCMP101|NSE2 family with sequence similarity 84, member B protein-coding 13-PTNLD9-TUMOR_peak_20254 chr17 2310242 2310646 + 15.43278 NA non-coding (NR_028335, exon 3 of 3) non-coding (NR_028335, exon 3 of 3) -6186 NM_020310 4335 Hs.626579 NM_020310 HPRD:04331 MNT MAD6|MXD6|ROX|bHLHd3 MAX network transcriptional repressor protein-coding 13-PTNLD9-TUMOR_peak_30722 chr20 30139396 30139694 + 15.43278 NA intron (NM_178580, intron 7 of 12) intron (NM_178580, intron 7 of 12) 4360 NR_003677 100101490 Hs.373741 NR_003677 MCTS2P MCTS2|PSIMCT-1 malignant T cell amplified sequence 2, pseudogene pseudo 13-PTNLD9-TUMOR_peak_4947 chr1 201345697 201345908 + 15.43169 NA intron (NM_001276347, intron 1 of 15) intron (NM_001276347, intron 1 of 15) 1026 NM_001276346 7139 Hs.533613 NM_000364 HPRD:01844 TNNT2 CMD1D|CMH2|CMPD2|LVNC6|RCM3|TnTC|cTnT troponin T type 2 (cardiac) protein-coding 13-PTNLD9-TUMOR_peak_19871 chr16 81180014 81180274 + 15.43110 NA intron (NM_052892, intron 30 of 42) intron (NM_052892, intron 30 of 42) 34823 NM_001278423 114780 Hs.413525 NM_052892 HPRD:06990 PKD1L2 PC1L2 polycystic kidney disease 1-like 2 protein-coding 13-PTNLD9-TUMOR_peak_35577 chr3 122697056 122697225 + 15.42976 NA intron (NR_046079, intron 1 of 22) intron (NR_046079, intron 1 of 22) -2159 NM_001256347 54437 Hs.210870 NM_018987 HPRD:15322 SEMA5B SEMAG|SemG sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B protein-coding 13-PTNLD9-TUMOR_peak_41327 chr5 75633743 75634088 + 15.42669 NA intron (NM_001297716, intron 12 of 12) intron (NM_001297716, intron 12 of 12) -65165 NM_006633 10788 Hs.291030 NM_006633 HPRD:09253 IQGAP2 - IQ motif containing GTPase activating protein 2 protein-coding 13-PTNLD9-TUMOR_peak_32318 chr21 40128850 40129094 + 15.42669 NA intron (NR_027065, intron 1 of 6) L1ME3B|LINE|L1 -4791 NR_027067 400866 Hs.278704 NM_001001789 HPRD:10744 LINC00114 C21orf24|NCRNA00114 long intergenic non-protein coding RNA 114 ncRNA 13-PTNLD9-TUMOR_peak_17657 chr15 74833292 74833440 + 15.42669 NA promoter-TSS (NM_006465) promoter-TSS (NM_006465) -182 NM_006465 10620 Hs.655532 NM_006465 HPRD:09806 ARID3B BDP|DRIL2 AT rich interactive domain 3B (BRIGHT-like) protein-coding 13-PTNLD9-TUMOR_peak_20050 chr16 87944807 87944997 + 15.42669 NA intron (NM_001739, intron 2 of 6) intron (NM_001739, intron 2 of 6) 25210 NM_001739 763 Hs.177446 NM_001739 HPRD:00262 CA5A CA5|CA5AD|CAV|CAVA carbonic anhydrase VA, mitochondrial protein-coding 13-PTNLD9-TUMOR_peak_21684 chr17 58682447 58682606 + 15.42669 NA intron (NM_003620, intron 1 of 5) Charlie1a|DNA|hAT-Charlie 4982 NM_003620 8493 Hs.286073 NM_003620 PPM1D PP2C-DELTA|WIP1 protein phosphatase, Mg2+/Mn2+ dependent, 1D protein-coding 13-PTNLD9-TUMOR_peak_18451 chr16 9217826 9218022 + 15.42669 NA Intergenic Intergenic 32387 NM_014117 29035 Hs.221497 NM_014117 C16orf72 PRO0149 chromosome 16 open reading frame 72 protein-coding 13-PTNLD9-TUMOR_peak_38760 chr4 84308394 84308604 + 15.40583 NA Intergenic MER34A|LTR|ERV1 -52193 NM_006665 10855 Hs.44227 NM_006665 HPRD:05286 HPSE HPA|HPA1|HPR1|HPSE1|HSE1 heparanase protein-coding 13-PTNLD9-TUMOR_peak_31055 chr20 39229535 39229764 + 15.40583 NA Intergenic Intergenic 88231 NM_005461 9935 Hs.169487 NM_005461 HPRD:07129 MAFB KRML|MCTO v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog B protein-coding 13-PTNLD9-TUMOR_peak_53953 chr9 92864676 92864814 + 15.39982 NA Intergenic Intergenic -60964 NR_038882 286370 Hs.407589 NR_038882 ENSG00000227555 LOC286370 - uncharacterized LOC286370 ncRNA 13-PTNLD9-TUMOR_peak_27335 chr2 75819207 75819498 + 15.39982 NA Intergenic Intergenic -22504 NM_032181 84141 Hs.302346 NM_032181 HPRD:07827 EVA1A FAM176A|TMEM166 eva-1 homolog A (C. elegans) protein-coding 13-PTNLD9-TUMOR_peak_50715 chr8 41650038 41650233 + 15.39982 NA intron (NM_001142446, intron 1 of 42) intron (NM_001142446, intron 1 of 42) 5005 NM_020475 286 Hs.654438 NM_000037 HPRD:01693 ANK1 ANK|SPH1|SPH2 ankyrin 1, erythrocytic protein-coding 13-PTNLD9-TUMOR_peak_18279 chr16 2918228 2918660 + 15.39982 NA Intergenic CpG -10273 NM_022119 64063 Hs.459709 NM_022119 HPRD:08336 PRSS22 BSSP-4|hBSSP-4 protease, serine, 22 protein-coding 13-PTNLD9-TUMOR_peak_19811 chr16 77814286 77814628 + 15.39982 NA Intergenic Intergenic -8026 NM_020927 57687 Hs.461405 NM_020927 HPRD:13875 VAT1L - vesicle amine transport 1-like protein-coding 13-PTNLD9-TUMOR_peak_15325 chr14 23548011 23548192 + 15.39982 NA exon (NM_001164814, exon 7 of 19) exon (NM_001164814, exon 7 of 19) -7322 NM_001164817 22985 Hs.124490 NM_014977 HPRD:05191 ACIN1 ACINUS|ACN|fSAP152 apoptotic chromatin condensation inducer 1 protein-coding 13-PTNLD9-TUMOR_peak_37638 chr4 2864336 2864734 + 15.39982 NA intron (NM_001286645, intron 1 of 17) L2a|LINE|L2 18658 NM_001286645 118 Hs.183706 NM_001119 HPRD:00036 ADD1 ADDA adducin 1 (alpha) protein-coding 13-PTNLD9-TUMOR_peak_40955 chr5 57111973 57112209 + 15.39982 NA Intergenic Intergenic 82898 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LOC101928539 - uncharacterized LOC101928539 ncRNA 13-PTNLD9-TUMOR_peak_19524 chr16 66416282 66416586 + 15.39573 NA intron (NM_001795, intron 2 of 11) intron (NM_001795, intron 2 of 11) 15909 NM_001795 1003 Hs.76206 NM_001795 HPRD:03075 CDH5 7B4|CD144 cadherin 5, type 2 (vascular endothelium) protein-coding 13-PTNLD9-TUMOR_peak_53067 chr9 34185972 34186514 + 15.39573 NA intron (NM_001171201, intron 1 of 5) intron (NM_001171201, intron 1 of 5) 7240 NR_033243 51271 Hs.268963 NM_016525 HPRD:15597 UBAP1 NAG20|UAP|UBAP|UBAP-1 ubiquitin associated protein 1 protein-coding 13-PTNLD9-TUMOR_peak_43381 chr6 332837 333138 + 15.39494 NA intron (NR_104473, intron 3 of 5) intron (NR_104473, intron 3 of 5) 40930 NM_001286555 56940 Hs.29106 NM_020185 HPRD:13255 DUSP22 JKAP|JSP-1|JSP1|LMW-DSP2|LMWDSP2|MKP-x|MKPX|VHX dual specificity phosphatase 22 protein-coding 13-PTNLD9-TUMOR_peak_49372 chr7 140059019 140059423 + 15.39355 NA intron (NM_001287498, intron 5 of 13) intron (NM_001287498, intron 5 of 13) 39129 NM_001287498 84255 Hs.446021 NM_032295 HPRD:15381 SLC37A3 - solute carrier family 37, member 3 protein-coding 13-PTNLD9-TUMOR_peak_11865 chr12 4115978 4116261 + 15.39259 NA Intergenic Intergenic -133505 NM_001286521 57097 Hs.657268 NM_020367 HPRD:15101 PARP11 ARTD11|C12orf6|MIB006 poly (ADP-ribose) polymerase family, member 11 protein-coding 13-PTNLD9-TUMOR_peak_7319 chr10 49864121 49864595 + 15.39259 NA promoter-TSS (NR_045675) promoter-TSS (NR_045675) -48 NR_045675 58504 Hs.655672 NM_021226 HPRD:12476 ARHGAP22 RhoGAP2|RhoGap22 Rho GTPase activating protein 22 protein-coding 13-PTNLD9-TUMOR_peak_1835 chr1 54422945 54423194 + 15.38362 NA intron (NM_052940, intron 2 of 7) intron (NM_052940, intron 2 of 7) 11070 NM_001256409 115353 Hs.40094 NM_052940 HPRD:14711 LRRC42 dJ167A19.4 leucine rich repeat containing 42 protein-coding 13-PTNLD9-TUMOR_peak_50368 chr8 24076247 24076529 + 15.38362 NA Intergenic Intergenic -75192 NM_021777 10863 Hs.174030 NM_014265 HPRD:08391 ADAM28 ADAM 28|ADAM23|MDC-L|MDC-Lm|MDC-Ls|MDCL|eMDC II|eMDCII ADAM metallopeptidase domain 28 protein-coding 13-PTNLD9-TUMOR_peak_47473 chr7 50237264 50237441 + 15.38362 NA Intergenic Intergenic 101670 NM_001161834 100130988 Hs.99248 NM_001161834 C7orf72 - chromosome 7 open reading frame 72 protein-coding 13-PTNLD9-TUMOR_peak_2852 chr1 112135508 112135862 + 15.38362 NA Intergenic Intergenic 15255 NR_034126 100129269 Hs.689728 NR_034126 LINC01160 - long intergenic non-protein coding RNA 1160 ncRNA 13-PTNLD9-TUMOR_peak_28853 chr2 159947302 159947675 + 15.38362 NA intron (NM_001145909, intron 3 of 26) intron (NM_001145909, intron 3 of 26) -95858 NR_106948 102465535 NR_106948 MIR6888 hsa-mir-6888 microRNA 6888 ncRNA 13-PTNLD9-TUMOR_peak_26990 chr2 57600783 57601054 + 15.38362 NA Intergenic Intergenic -533868 NM_001288837 7444 Hs.715298 NM_006296 HPRD:03702 VRK2 - vaccinia related kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_8317 chr10 111911363 111911551 + 15.38362 NA Intergenic Intergenic -55906 NM_130439 4601 Hs.602078 NM_005962 HPRD:02486 MXI1 MAD2|MXD2|MXI|bHLHc11 MAX interactor 1, dimerization protein protein-coding 13-PTNLD9-TUMOR_peak_34913 chr3 69301991 69302141 + 15.38362 NA intron (NM_015123, intron 5 of 22) intron (NM_015123, intron 5 of 22) -130320 NM_198271 56203 Hs.350621 NM_198271 HPRD:13993 LMOD3 - leiomodin 3 (fetal) protein-coding 13-PTNLD9-TUMOR_peak_5039 chr1 202569372 202569497 + 15.38362 NA intron (NM_001136504, intron 7 of 8) intron (NM_001136504, intron 7 of 8) 43147 NM_001136504 127833 Hs.25422 NM_177402 HPRD:02520 SYT2 SytII synaptotagmin II protein-coding 13-PTNLD9-TUMOR_peak_52214 chr8 135703636 135703763 + 15.38362 NA intron (NM_001289394, intron 1 of 16) intron (NM_001289394, intron 1 of 16) 5102 NM_001174158 57623 Hs.446172 NM_020863 HPRD:11712 ZFAT AITD3|ZFAT1|ZNF406 zinc finger and AT hook domain containing protein-coding 13-PTNLD9-TUMOR_peak_47246 chr7 36698744 36698958 + 15.38362 NA exon (NM_001637, exon 4 of 21) exon (NM_001637, exon 4 of 21) -59125 NR_046764 100874264 Hs.690994 NR_046764 AOAH-IT1 - AOAH intronic transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_3537 chr1 150033645 150033935 + 15.37074 NA Intergenic LTR47B|LTR|ERVL -5560 NM_007259 11311 Hs.443750 NM_007259 HPRD:10301 VPS45 H1|H1VPS45|SCN5|VPS45A|VPS45B|VPS54A|VSP45|VSP45A vacuolar protein sorting 45 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_5878 chr1 233843212 233843594 + 15.37074 NA Intergenic Intergenic 83505 NR_039625 100616390 NR_039625 MIR4427 - microRNA 4427 ncRNA 13-PTNLD9-TUMOR_peak_32451 chr21 44335466 44335651 + 15.37074 NA Intergenic AluY|SINE|Alu 22180 NM_021075 4731 Hs.473937 NM_021075 NDUFV3 CI-10k|CI-9KD NADH dehydrogenase (ubiquinone) flavoprotein 3, 10kDa protein-coding 13-PTNLD9-TUMOR_peak_33112 chr22 31226000 31226402 + 15.37074 NA intron (NM_001282741, intron 1 of 12) intron (NM_001282741, intron 1 of 12) 7698 NM_001282741 23762 Hs.517546 NM_030758 HPRD:09471 OSBP2 HLM|ORP-4|ORP4|OSBPL1|OSBPL4 oxysterol binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_48716 chr7 104908646 104908778 + 15.37074 NA intron (NM_182692, intron 2 of 15) intron (NM_182692, intron 2 of 15) 812 NM_182691 6733 Hs.285197 NM_182691 HPRD:04280 SRPK2 SFRSK2 SRSF protein kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_36165 chr3 140185928 140186173 + 15.37074 NA intron (NM_022131, intron 8 of 16) intron (NM_022131, intron 8 of 16) 41581 NR_108084 101927808 Hs.581236 NR_108084 ENSG00000250433 CLSTN2-AS1 - CLSTN2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_11377 chr11 118783036 118783406 + 15.36242 NA Intergenic Intergenic -1608 NM_182557 283149 Hs.414740 NM_182557 BCL9L BCL9-2|DLNB11 B-cell CLL/lymphoma 9-like protein-coding 13-PTNLD9-TUMOR_peak_11781 chr12 860409 860616 + 15.36180 NA Intergenic Intergenic -1577 NM_001184985 65125 Hs.744906 NM_014823 HPRD:05570 WNK1 HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65 WNK lysine deficient protein kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_45426 chr6 64281763 64281976 + 15.35916 NA promoter-TSS (NM_003463) promoter-TSS (NM_003463) -48 NM_003463 7803 Hs.227777 NM_003463 HPRD:03349 PTP4A1 HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1 protein tyrosine phosphatase type IVA, member 1 protein-coding 13-PTNLD9-TUMOR_peak_50879 chr8 48650624 48650823 + 15.35916 NA promoter-TSS (NM_005195) promoter-TSS (NM_005195) 3 NM_005195 1052 Hs.440829 NM_005195 CEBPD C/EBP-delta|CELF|CRP3|NF-IL6-beta CCAAT/enhancer binding protein (C/EBP), delta protein-coding 13-PTNLD9-TUMOR_peak_52795 chr9 16040414 16040640 + 15.35529 NA Intergenic Intergenic 212578 NM_001271829 100129385 Hs.586441 NM_001271829 ENSG00000205549 C9orf92 Em:AL513424.1 chromosome 9 open reading frame 92 protein-coding 13-PTNLD9-TUMOR_peak_52903 chr9 21812569 21812721 + 15.35529 NA intron (NM_002451, intron 1 of 7) intron (NM_002451, intron 1 of 7) 10010 NM_002451 4507 Hs.193268 NM_002451 HPRD:01134 MTAP BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus methylthioadenosine phosphorylase protein-coding 13-PTNLD9-TUMOR_peak_49016 chr7 128947559 128947708 + 15.35529 NA intron (NM_001130720, intron 1 of 16) L1MA2|LINE|L1 -60331 NM_001130723 23382 Hs.600789 NM_015328 HPRD:11113 AHCYL2 ADOHCYASE3 adenosylhomocysteinase-like 2 protein-coding 13-PTNLD9-TUMOR_peak_24633 chr19 30289769 30289963 + 15.35529 NA Intergenic L1MC5|LINE|L1 -13035 NM_001238 898 Hs.244723 NM_001238 HPRD:00455 CCNE1 CCNE cyclin E1 protein-coding 13-PTNLD9-TUMOR_peak_34689 chr3 53809959 53810278 + 15.35529 NA intron (NM_000720, intron 36 of 48) intron (NM_000720, intron 36 of 48) 70302 NM_018397 55349 Hs.126688 NM_018397 CHDH - choline dehydrogenase protein-coding 13-PTNLD9-TUMOR_peak_47531 chr7 55133489 55133692 + 15.35529 NA intron (NM_201284, intron 1 of 15) intron (NM_201284, intron 1 of 15) 46865 NM_005228 1956 Hs.488293 NM_005228 HPRD:00579 EGFR ERBB|ERBB1|HER1|PIG61|mENA epidermal growth factor receptor protein-coding 13-PTNLD9-TUMOR_peak_47907 chr7 73406538 73406687 + 15.35529 NA Intergenic Mam_R4|LINE|Dong-R4 -35507 NM_001278914 2006 Hs.647061 NM_000501 HPRD:00556 ELN SVAS|WBS|WS elastin protein-coding 13-PTNLD9-TUMOR_peak_43517 chr6 3247458 3247706 + 15.35171 NA Intergenic Intergenic -11580 NM_001128591 389362 Hs.207069 NM_001128591 ENSG00000180822 PSMG4 C6orf86|PAC4|bA506K6.2 proteasome (prosome, macropain) assembly chaperone 4 protein-coding 13-PTNLD9-TUMOR_peak_20142 chr16 89668952 89669169 + 15.35171 NA Intergenic Intergenic -10656 NM_001128141 1800 Hs.109 NM_004413 HPRD:01563 DPEP1 MBD1|MDP|RDP dipeptidase 1 (renal) protein-coding 13-PTNLD9-TUMOR_peak_49235 chr7 135429799 135429951 + 15.35171 NA intron (NM_205855, intron 1 of 3) intron (NM_205855, intron 1 of 3) 3719 NM_205855 389558 Hs.55200 NM_205855 HPRD:15613 FAM180A UNQ1940 family with sequence similarity 180, member A protein-coding 13-PTNLD9-TUMOR_peak_43676 chr6 7390246 7390430 + 15.35171 NA promoter-TSS (NM_001170693) promoter-TSS (NM_001170693) 276 NM_031480 83732 Hs.437474 NM_031480 HPRD:17978 RIOK1 AD034|RRP10|bA288G3.1 RIO kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_6727 chr10 25348998 25349297 + 15.35171 NA intron (NM_001270383, intron 2 of 5) intron (NM_001270383, intron 2 of 5) 2061 NM_001270383 219670 Hs.534486 NM_145010 HPRD:12583 ENKUR C10orf63|CFAP106 enkurin, TRPC channel interacting protein protein-coding 13-PTNLD9-TUMOR_peak_31066 chr20 39632015 39632565 + 15.35171 NA Intergenic Intergenic -25172 NM_003286 7150 Hs.472737 NM_003286 HPRD:00535 TOP1 TOPI topoisomerase (DNA) I protein-coding 13-PTNLD9-TUMOR_peak_28476 chr2 132439801 132440362 + 15.34956 NA Intergenic CpG -39983 NM_013310 29798 Hs.635289 NM_013310 HPRD:12811 C2orf27A C2orf27|C2orf27B chromosome 2 open reading frame 27A protein-coding 13-PTNLD9-TUMOR_peak_47333 chr7 43909580 43909761 + 15.34945 NA promoter-TSS (NM_032014) promoter-TSS (NM_032014) -525 NM_032014 64951 Hs.284286 NM_032014 HPRD:17593 MRPS24 MRP-S24|S24mt|bMRP-47|bMRP47 mitochondrial ribosomal protein S24 protein-coding 13-PTNLD9-TUMOR_peak_46241 chr6 148644575 148644909 + 15.34945 NA Intergenic L2c|LINE|L2 -18987 NM_015278 23328 Hs.193133 NM_015278 HPRD:06408 SASH1 SH3D6A|dJ323M4|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_41893 chr5 123996429 123996712 + 15.34945 NA intron (NM_020747, intron 2 of 8) intron (NM_020747, intron 2 of 8) 84235 NM_020747 57507 Hs.266616 NM_020747 HPRD:18357 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 13-PTNLD9-TUMOR_peak_37426 chr3 196126583 196126844 + 15.33981 NA intron (NM_015562, intron 3 of 10) Charlie1a|DNA|hAT-Charlie 32632 NM_015562 26043 Hs.518524 NM_015562 UBXN7 UBXD7 UBX domain protein 7 protein-coding 13-PTNLD9-TUMOR_peak_27972 chr2 109588600 109588834 + 15.33981 NA intron (NM_022336, intron 1 of 11) intron (NM_022336, intron 1 of 11) 17111 NM_022336 10913 Hs.171971 NM_022336 HPRD:04974 EDAR DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1 ectodysplasin A receptor protein-coding 13-PTNLD9-TUMOR_peak_13569 chr12 99548473 99548687 + 15.33981 NA promoter-TSS (NM_001204070) promoter-TSS (NM_001204070) -3 NM_001204068 56899 Hs.506458 NM_020140 HPRD:07426 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 13-PTNLD9-TUMOR_peak_21819 chr17 64463236 64463474 + 15.33981 NA intron (NM_002737, intron 2 of 16) intron (NM_002737, intron 2 of 16) -50383 NR_110822 101928001 Hs.650730 NR_110822 ENSG00000264630 LOC101928001 - uncharacterized LOC101928001 ncRNA 13-PTNLD9-TUMOR_peak_41439 chr5 81701075 81701228 + 15.33981 NA Intergenic Intergenic 125870 NM_001017971 92270 Hs.729805 NM_001017971 HPRD:18710 ATP6AP1L - ATPase, H+ transporting, lysosomal accessory protein 1-like protein-coding 13-PTNLD9-TUMOR_peak_22143 chr17 76155939 76156132 + 15.33981 NA intron (NM_001163075, intron 2 of 4) L1MB5|LINE|L1 -8636 NM_004710 9144 Hs.464210 NM_004710 HPRD:04891 SYNGR2 - synaptogyrin 2 protein-coding 13-PTNLD9-TUMOR_peak_36681 chr3 169976346 169976560 + 15.33981 NA intron (NM_002740, intron 2 of 17) 7SK|RNA|RNA 36233 NM_002740 5584 Hs.478199 NM_002740 HPRD:02105 PRKCI DXS1179E|PKCI|nPKC-iota protein kinase C, iota protein-coding 13-PTNLD9-TUMOR_peak_46967 chr7 18548226 18548363 + 15.32839 NA promoter-TSS (NM_001204147) promoter-TSS (NM_001204147) -606 NM_001204147 9734 Hs.196054 NM_014707 HPRD:05944 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 13-PTNLD9-TUMOR_peak_41079 chr5 65625015 65625249 + 15.31725 NA Intergenic L3|LINE|CR1 182300 NR_105001 101928769 Hs.97903 NR_105001 ENSG00000250313 LOC101928769 - uncharacterized LOC101928769 ncRNA 13-PTNLD9-TUMOR_peak_11918 chr12 5550674 5550977 + 15.31725 NA intron (NM_001102654, intron 1 of 1) L2c|LINE|L2 9545 NM_001102654 4908 Hs.99171 NM_002527 HPRD:01219 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 13-PTNLD9-TUMOR_peak_50892 chr8 49293122 49293303 + 15.31584 NA Intergenic CpG -170915 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 13-PTNLD9-TUMOR_peak_41230 chr5 71893450 71893733 + 15.31584 NA intron (NR_105007, intron 1 of 2) intron (NR_105007, intron 1 of 2) 40687 NR_105008 102503427 Hs.429280 NR_105008 LOC102503427 - uncharacterized LOC102503427 ncRNA 13-PTNLD9-TUMOR_peak_37847 chr4 7905944 7906228 + 15.31584 NA intron (NM_198595, intron 1 of 16) intron (NM_198595, intron 1 of 16) 35567 NM_198595 60312 Hs.529369 NM_021638 HPRD:09747 AFAP1 AFAP|AFAP-110|AFAP110 actin filament associated protein 1 protein-coding 13-PTNLD9-TUMOR_peak_15596 chr14 39566421 39566608 + 15.31584 NA intron (NM_006364, intron 1 of 19) intron (NM_006364, intron 1 of 19) 5923 NM_006364 10484 Hs.272927 NM_006364 HPRD:06714 SEC23A CLSD Sec23 homolog A (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_42218 chr5 137335876 137336079 + 15.31584 NA intron (NM_001101801, intron 6 of 21) AluJb|SINE|Alu 32825 NM_016603 51306 Hs.567453 NM_016603 HPRD:06464 FAM13B ARHGAP49|C5orf5|FAM13B1|KHCHP|N61 family with sequence similarity 13, member B protein-coding 13-PTNLD9-TUMOR_peak_33142 chr22 32225587 32225797 + 15.31584 NA intron (NM_001242896, intron 24 of 42) intron (NM_001242896, intron 24 of 42) 74844 NM_014662 9681 Hs.435022 NM_014662 HPRD:16795 DEPDC5 DEP.5|FFEVF DEP domain containing 5 protein-coding 13-PTNLD9-TUMOR_peak_53852 chr9 88761720 88761892 + 15.31584 NA intron (NR_110996, intron 4 of 4) HERVH-int|LTR|ERV1 19351 NR_110996 101927623 Hs.575644 NR_110996 LOC101927623 - uncharacterized LOC101927623 ncRNA 13-PTNLD9-TUMOR_peak_36816 chr3 177186223 177186449 + 15.31551 NA intron (NR_047568, intron 1 of 3) intron (NR_047568, intron 1 of 3) 26627 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 13-PTNLD9-TUMOR_peak_38801 chr4 86748844 86749063 + 15.31551 NA promoter-TSS (NM_001287805) promoter-TSS (NM_001287805) -93 NM_001287805 83478 Hs.444229 NM_031305 HPRD:09804 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 13-PTNLD9-TUMOR_peak_26679 chr2 42193743 42193900 + 15.31551 NA Intergenic Intergenic -12878 NM_001242815 400950 Hs.738713 NM_001242815 ENSG00000205086 C2orf91 - chromosome 2 open reading frame 91 protein-coding 13-PTNLD9-TUMOR_peak_32469 chr21 44582864 44583222 + 15.31551 NA Intergenic Intergenic -6075 NM_000394 1409 Hs.184085 NM_000394 HPRD:00427 CRYAA CRYA1|CTRCT9|HSPB4 crystallin, alpha A protein-coding 13-PTNLD9-TUMOR_peak_43820 chr6 12491369 12491893 + 15.31551 NA Intergenic Intergenic -99045 NR_103808 100887744 NR_103808 RNU6-48P RNU6-48 RNA, U6 small nuclear 48, pseudogene snRNA 13-PTNLD9-TUMOR_peak_32261 chr21 37575916 37576050 + 15.31551 NA intron (NM_005128, intron 4 of 36) intron (NM_005128, intron 4 of 36) 39144 NM_005128 9980 Hs.204575 NM_005128 HPRD:07271 DOPEY2 21orf5|C21orf5 dopey family member 2 protein-coding 13-PTNLD9-TUMOR_peak_51541 chr8 106530111 106530564 + 15.31551 NA intron (NM_012082, intron 3 of 7) intron (NM_012082, intron 3 of 7) 199190 NM_012082 23414 Hs.431009 NM_012082 HPRD:04737 ZFPM2 DIH3|FOG2|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 13-PTNLD9-TUMOR_peak_51716 chr8 119561186 119561343 + 15.31106 NA intron (NR_109794, intron 2 of 4) L1PA3|LINE|L1 -71976 NR_038210 552860 Hs.571527 NR_038210 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_4739 chr1 184357618 184357837 + 15.31106 NA intron (NM_030806, intron 1 of 5) intron (NM_030806, intron 1 of 5) 1577 NM_030806 81563 Hs.497159 NM_030806 HPRD:12721 C1orf21 PIG13 chromosome 1 open reading frame 21 protein-coding 13-PTNLD9-TUMOR_peak_32115 chr21 32726975 32727481 + 15.31106 NA intron (NM_003253, intron 2 of 28) intron (NM_003253, intron 2 of 28) 204062 NM_003253 7074 Hs.517228 NM_003253 HPRD:02820 TIAM1 - T-cell lymphoma invasion and metastasis 1 protein-coding 13-PTNLD9-TUMOR_peak_30736 chr20 30198391 30198767 + 15.31000 NA Intergenic Intergenic 3590 NR_036161 100422904 NR_036161 miRBase:MI0014238 MIR3193 - microRNA 3193 ncRNA 13-PTNLD9-TUMOR_peak_37043 chr3 185821865 185822039 + 15.30536 NA intron (NM_004454, intron 5 of 12) intron (NM_004454, intron 5 of 12) 4949 NM_004454 2119 Hs.43697 NM_004454 HPRD:09035 ETV5 ERM ets variant 5 protein-coding 13-PTNLD9-TUMOR_peak_35471 chr3 118501672 118501920 + 15.30494 NA Intergenic Intergenic -160127 NR_046230 100506765 Hs.660823 NR_046230 ENSG00000239877 IGSF11-AS1 - IGSF11 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_14473 chr13 27915072 27915438 + 15.30494 NA Intergenic Tigger3a|DNA|TcMar-Tigger 70791 NM_206827 387496 Hs.192131 NM_206827 HPRD:17956 RASL11A - RAS-like, family 11, member A protein-coding 13-PTNLD9-TUMOR_peak_18552 chr16 13203957 13204635 + 15.30494 NA intron (NM_001145204, intron 2 of 4) intron (NM_001145204, intron 2 of 4) 208819 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 13-PTNLD9-TUMOR_peak_4694 chr1 183149915 183150203 + 15.30284 NA Intergenic Intergenic -5115 NM_005562 3918 Hs.591484 NM_005562 HPRD:01031 LAMC2 B2T|BM600|CSF|EBR2|EBR2A|LAMB2T|LAMNB2 laminin, gamma 2 protein-coding 13-PTNLD9-TUMOR_peak_33010 chr22 26812821 26813239 + 15.30284 NA Intergenic Intergenic -12250 NM_020437 57168 Hs.567547 NM_020437 HPRD:14255 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_37539 chr4 715056 715620 + 15.27944 NA intron (NM_006315, intron 1 of 10) intron (NM_006315, intron 1 of 10) 15765 NM_006315 10336 Hs.144309 NM_006315 HPRD:11515 PCGF3 DONG1|RNF3|RNF3A polycomb group ring finger 3 protein-coding 13-PTNLD9-TUMOR_peak_27204 chr2 70368349 70368673 + 15.27944 NA Intergenic MIRb|SINE|MIR -16063 NR_024444 100133985 Hs.135528 NR_024444 ENSG00000231327 LOC100133985 - uncharacterized LOC100133985 ncRNA 13-PTNLD9-TUMOR_peak_6926 chr10 35047379 35047592 + 15.27875 NA intron (NM_001184791, intron 1 of 20) intron (NM_001184791, intron 1 of 20) 56768 NM_001184791 56288 Hs.131489 NM_019619 HPRD:05994 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 13-PTNLD9-TUMOR_peak_15049 chr13 103934994 103935221 + 15.27875 NA promoter-TSS (NR_049840) promoter-TSS (NR_049840) -259 NR_049840 100847092 NR_049840 MIR548AS - microRNA 548as ncRNA 13-PTNLD9-TUMOR_peak_7841 chr10 80448214 80448421 + 15.27875 NA Intergenic Intergenic 378888 NR_024429 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_8004 chr10 92680898 92681233 + 15.27875 NA promoter-TSS (NM_014391) promoter-TSS (NM_014391) -33 NM_014391 27063 Hs.448589 NM_014391 HPRD:10647 ANKRD1 ALRP|C-193|CARP|CVARP|MCARP|bA320F15.2 ankyrin repeat domain 1 (cardiac muscle) protein-coding 13-PTNLD9-TUMOR_peak_18844 chr16 27186174 27186372 + 15.27875 NA Intergenic LTR32|LTR|ERVL -28534 NM_024773 79831 Hs.145717 NM_024773 HPRD:07836 KDM8 JMJD5 lysine (K)-specific demethylase 8 protein-coding 13-PTNLD9-TUMOR_peak_30630 chr20 24112101 24112291 + 15.27875 NA Intergenic MER41B|LTR|ERV1 -68207 NR_040102 400839 Hs.651965 NR_040102 ENSG00000230133 FLJ33581 - uncharacterized LOC400839 ncRNA 13-PTNLD9-TUMOR_peak_53735 chr9 81588778 81589132 + 15.27875 NA Intergenic (TTCA)n|Simple_repeat|Simple_repeat 171626 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 13-PTNLD9-TUMOR_peak_43799 chr6 11810264 11810515 + 15.27033 NA Intergenic Intergenic -31109 NM_032744 84830 Hs.126409 NM_032744 HPRD:12836 ADTRP AIG1L|C6orf105|dJ413H6.1 androgen-dependent TFPI-regulating protein protein-coding 13-PTNLD9-TUMOR_peak_54530 chr9 117126444 117126702 + 15.27033 NA intron (NM_030767, intron 7 of 21) MIR|SINE|MIR 30112 NM_030767 80709 Hs.494895 NM_030767 HPRD:16148 AKNA - AT-hook transcription factor protein-coding 13-PTNLD9-TUMOR_peak_5990 chr1 236072062 236072400 + 15.26717 NA Intergenic L2|LINE|L2 -25223 NM_001301365 1130 Hs.532411 NM_000081 HPRD:06060 LYST CHS|CHS1 lysosomal trafficking regulator protein-coding 13-PTNLD9-TUMOR_peak_23999 chr19 11434874 11435300 + 15.26173 NA 3' UTR (NM_004283, exon 5 of 5) 3' UTR (NM_004283, exon 5 of 5) 15257 NM_004283 9545 Hs.744916 NM_004283 HPRD:05070 RAB3D D2-2|GOV|RAB16|RAD3D RAB3D, member RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_32705 chr22 18793013 18793163 + 15.26173 NA Intergenic Intergenic -13614 NR_003267 2679 Hs.595809 NR_003267 ENSG00000197421 GGT3P GGT3 gamma-glutamyltransferase 3 pseudogene pseudo 13-PTNLD9-TUMOR_peak_51918 chr8 126570672 126570910 + 15.26173 NA Intergenic Intergenic 126340 NM_001282985 10221 Hs.444947 NM_025195 HPRD:09863 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 13-PTNLD9-TUMOR_peak_139 chr1 2466355 2466636 + 15.26173 NA Intergenic Intergenic -4811 NM_001010926 388585 Hs.57971 NM_001010926 HPRD:16240 HES5 bHLHb38 hes family bHLH transcription factor 5 protein-coding 13-PTNLD9-TUMOR_peak_38814 chr4 87752353 87752602 + 15.26035 NA intron (NM_197965, intron 3 of 5) intron (NM_197965, intron 3 of 5) 17939 NM_197965 345274 Hs.452996 NM_197965 HPRD:11593 SLC10A6 SOAT solute carrier family 10 (sodium/bile acid cotransporter), member 6 protein-coding 13-PTNLD9-TUMOR_peak_26148 chr2 11970102 11970528 + 15.26035 NA Intergenic (TG)n|Simple_repeat|Simple_repeat 6797 NR_036226 100422996 NR_036226 miRBase:MI0015872 MIR4262 - microRNA 4262 ncRNA 13-PTNLD9-TUMOR_peak_11904 chr12 5287039 5287194 + 15.26035 NA Intergenic Intergenic 62162 NR_120476 101929584 Hs.436529 NR_120476 ENSG00000256115 LOC101929584 - uncharacterized LOC101929584 ncRNA 13-PTNLD9-TUMOR_peak_10712 chr11 77313411 77313696 + 15.26035 NA intron (NM_173039, intron 1 of 2) Tigger12c|DNA|TcMar-Tigger 12873 NM_173039 282679 Hs.503345 NM_173039 HPRD:16503 AQP11 AQPX1 aquaporin 11 protein-coding 13-PTNLD9-TUMOR_peak_2274 chr1 82148182 82148481 + 15.26035 NA Intergenic Intergenic -17124 NM_001297704 23266 Hs.24212 NM_012302 HPRD:06116 LPHN2 CIRL2|CL2|LEC1|LPHH1 latrophilin 2 protein-coding 13-PTNLD9-TUMOR_peak_16301 chr14 76114592 76115188 + 15.26035 NA TTS (NM_017791) TTS (NM_017791) 12648 NM_007176 11161 Hs.15106 NM_007176 C14orf1 ERG28|NET51 chromosome 14 open reading frame 1 protein-coding 13-PTNLD9-TUMOR_peak_19882 chr16 81455206 81455537 + 15.25591 NA Intergenic Intergenic -23404 NM_198390 80790 Hs.594095 NM_030629 HPRD:10839 CMIP TCMIP c-Maf inducing protein protein-coding 13-PTNLD9-TUMOR_peak_29987 chr2 231559020 231559360 + 15.25591 NA intron (NR_040038, intron 3 of 3) intron (NR_040038, intron 3 of 3) 6054 NR_040038 151475 Hs.528154 NR_040038 ENSG00000226125 LOC151475 - uncharacterized LOC151475 ncRNA 13-PTNLD9-TUMOR_peak_47859 chr7 72722777 72722939 + 15.25591 NA promoter-TSS (NM_001168348) promoter-TSS (NM_001168348) 6 NM_018044 55695 Hs.510927 NM_018044 HPRD:11678 NSUN5 NOL1|NOL1R|NSUN5A|WBSCR20|WBSCR20A|p120 NOP2/Sun domain family, member 5 protein-coding 13-PTNLD9-TUMOR_peak_39448 chr4 140908721 140908888 + 15.25591 NA intron (NM_018717, intron 1 of 5) intron (NM_018717, intron 1 of 5) 166429 NM_018717 55534 Hs.586165 NM_018717 HPRD:10066 MAML3 CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3 mastermind-like 3 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_13239 chr12 68110754 68110983 + 15.25591 NA intron (NR_110063, intron 3 of 4) intron (NR_110063, intron 3 of 4) 12387 NR_110063 101927901 Hs.369609 NR_110063 ENSG00000255970 LOC101927901 - uncharacterized LOC101927901 ncRNA 13-PTNLD9-TUMOR_peak_23291 chr18 55977833 55978074 + 15.25591 NA intron (NM_001243960, intron 5 of 28) intron (NM_001243960, intron 5 of 28) 89199 NM_001144966 23327 Hs.185677 NM_015277 HPRD:05903 NEDD4L NEDD4-2|NEDD4.2|RSP5|hNEDD4-2 neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_35694 chr3 125502746 125502963 + 15.25457 NA Intergenic Intergenic 6541 NR_031687 100302204 NR_031687 miRBase:MI0006421 MIR548I1 MIR548I-1|MIRN548I1|hsa-mir-548i-1 microRNA 548i-1 ncRNA 13-PTNLD9-TUMOR_peak_16771 chr15 22387313 22387639 + 15.25457 NA Intergenic L1P4b|LINE|L1 5094 NM_001005241 283694 Hs.525666 NM_001005241 OR4N4 OR15-1|OR15-5 olfactory receptor, family 4, subfamily N, member 4 protein-coding 13-PTNLD9-TUMOR_peak_39974 chr4 184744633 184744843 + 15.25457 NA Intergenic Intergenic -81771 NM_020225 56977 Hs.21958 NM_020225 HPRD:16823 STOX2 - storkhead box 2 protein-coding 13-PTNLD9-TUMOR_peak_17786 chr15 81605458 81605788 + 15.25457 NA TTS (NM_004513) TTS (NM_004513) 10901 NM_181900 80765 Hs.513075 NM_030574 STARD5 - StAR-related lipid transfer (START) domain containing 5 protein-coding 13-PTNLD9-TUMOR_peak_19051 chr16 31076333 31076526 + 15.25457 NA promoter-TSS (NM_001172669) promoter-TSS (NM_001172669) -20 NM_001172669 79759 Hs.102928 NM_024706 HPRD:07828 ZNF668 - zinc finger protein 668 protein-coding 13-PTNLD9-TUMOR_peak_42056 chr5 132175307 132175685 + 15.24974 NA Intergenic Intergenic -8906 NM_001172700 134549 Hs.519574 NM_133456 HPRD:10655 SHROOM1 APXL2 shroom family member 1 protein-coding 13-PTNLD9-TUMOR_peak_15498 chr14 34116802 34116977 + 15.24974 NA intron (NM_001165893, intron 4 of 10) intron (NM_001165893, intron 4 of 10) 303395 NM_022073 112399 Hs.135507 NM_022073 HPRD:06972 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia-inducible factor 3 protein-coding 13-PTNLD9-TUMOR_peak_52765 chr9 14221640 14221924 + 15.24974 NA intron (NM_005596, intron 2 of 8) intron (NM_005596, intron 2 of 8) -40981 NM_001282787 4781 Hs.644095 NM_005596 HPRD:09008 NFIB CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I/B protein-coding 13-PTNLD9-TUMOR_peak_42716 chr5 152732280 152732459 + 15.24974 NA Intergenic Intergenic -137715 NM_001258020 2890 Hs.519693 NM_000827 HPRD:00695 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate receptor, ionotropic, AMPA 1 protein-coding 13-PTNLD9-TUMOR_peak_30991 chr20 37075174 37075402 + 15.24974 NA promoter-TSS (NR_003239) promoter-TSS (NR_003239) -9 NR_003239 128439 Hs.16936 NM_139016 HPRD:11814 SNHG11 C20orf198|LINC00101|NCRNA00101 small nucleolar RNA host gene 11 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_31044 chr20 39044987 39045219 + 15.24974 NA Intergenic Intergenic 272777 NM_005461 9935 Hs.169487 NM_005461 HPRD:07129 MAFB KRML|MCTO v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog B protein-coding 13-PTNLD9-TUMOR_peak_38032 chr4 15895574 15895919 + 15.24974 NA Intergenic L1ME3A|LINE|L1 44617 NM_005130 9982 Hs.1690 NM_005130 HPRD:06371 FGFBP1 FGF-BP|FGF-BP1|FGFBP|FGFBP-1|HBP17 fibroblast growth factor binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_54687 chr9 124749704 124749885 + 15.24974 NA intron (NM_001139442, intron 4 of 8) L2b|LINE|L2 106091 NM_001139442 158135 Hs.438937 NM_194252 HPRD:10047 TTLL11 C9orf20|bA244O19.1 tubulin tyrosine ligase-like family, member 11 protein-coding 13-PTNLD9-TUMOR_peak_17402 chr15 62798537 62798723 + 15.24974 NA Intergenic Intergenic 138750 NR_026897 197003 Hs.352253 NM_152648 ENSG00000259458 MGC15885 - uncharacterized protein MGC15885 ncRNA 13-PTNLD9-TUMOR_peak_16514 chr14 96670966 96671225 + 15.24974 NA promoter-TSS (NM_000623) promoter-TSS (NM_000623) -40 NM_000623 624 Hs.654542 NM_000623 HPRD:00213 BDKRB2 B2R|BK-2|BK2|BKR2|BRB2 bradykinin receptor B2 protein-coding 13-PTNLD9-TUMOR_peak_14145 chr12 122922207 122922380 + 15.24974 NA Intergenic Intergenic -15177 NM_002956 6249 Hs.524809 NM_002956 HPRD:01568 CLIP1 CLIP|CLIP-170|CLIP170|CYLN1|RSN CAP-GLY domain containing linker protein 1 protein-coding 13-PTNLD9-TUMOR_peak_52796 chr9 16133920 16134150 + 15.24974 NA Intergenic Intergenic 119070 NM_001271829 100129385 Hs.586441 NM_001271829 ENSG00000205549 C9orf92 Em:AL513424.1 chromosome 9 open reading frame 92 protein-coding 13-PTNLD9-TUMOR_peak_11369 chr11 118436625 118436831 + 15.24974 NA promoter-TSS (NM_020153) promoter-TSS (NM_020153) 63 NM_001168618 56912 Hs.533738 NM_020153 HPRD:07967 IFT46 C11orf2|C11orf60|CFAP32 intraflagellar transport 46 protein-coding 13-PTNLD9-TUMOR_peak_19061 chr16 31150018 31150279 + 15.24176 NA TTS (NM_173502) TTS (NM_173502) -2997 NM_002773 5652 Hs.75799 NM_002773 HPRD:02895 PRSS8 CAP1|PROSTASIN protease, serine, 8 protein-coding 13-PTNLD9-TUMOR_peak_4998 chr1 201977329 201977561 + 15.23882 NA Intergenic Intergenic -2245 NM_004433 1999 Hs.603657 NM_004433 HPRD:03722 ELF3 EPR-1|ERT|ESE-1|ESX E74-like factor 3 (ets domain transcription factor, epithelial-specific ) protein-coding 13-PTNLD9-TUMOR_peak_19099 chr16 32334027 32334242 + 15.23593 NA Intergenic Intergenic -32832 NR_033866 390705 Hs.278513 NR_033866 LOC390705 - protein phosphatase 2, regulatory subunit B'', beta pseudogene pseudo 13-PTNLD9-TUMOR_peak_32742 chr22 19811407 19811639 + 15.23036 NA intron (NM_053004, intron 2 of 7) intron (NM_053004, intron 2 of 7) 30848 NM_024627 79680 Hs.105642 NM_024627 HPRD:13382 C22orf29 BOP chromosome 22 open reading frame 29 protein-coding 13-PTNLD9-TUMOR_peak_49834 chr7 157102873 157103165 + 15.23036 NA Intergenic Intergenic -26691 NM_005494 10049 Hs.490745 NM_005494 HPRD:07107 DNAJB6 DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|MRJ|MSJ-1 DnaJ (Hsp40) homolog, subfamily B, member 6 protein-coding 13-PTNLD9-TUMOR_peak_5213 chr1 205474990 205475254 + 15.23036 NA intron (NM_002596, intron 1 of 15) intron (NM_002596, intron 1 of 15) 1438 NM_002596 5129 Hs.445402 NM_002596 HPRD:01354 CDK18 PCTAIRE|PCTAIRE3|PCTK3 cyclin-dependent kinase 18 protein-coding 13-PTNLD9-TUMOR_peak_53203 chr9 37953817 37954414 + 15.22793 NA intron (NM_003028, intron 4 of 5) intron (NM_003028, intron 4 of 5) -49765 NR_024873 92014 Hs.634120 NM_033412 HPRD:14370 SLC25A51 CG7943|MCART1 solute carrier family 25, member 51 protein-coding 13-PTNLD9-TUMOR_peak_16170 chr14 70136878 70137073 + 15.21869 NA intron (NM_014734, intron 2 of 5) intron (NM_014734, intron 2 of 5) 58665 NM_014734 9766 Hs.440025 NM_014734 HPRD:10010 KIAA0247 - KIAA0247 protein-coding 13-PTNLD9-TUMOR_peak_30404 chr20 10198700 10199013 + 15.21869 NA promoter-TSS (NM_130811) promoter-TSS (NM_130811) -621 NM_003081 6616 Hs.167317 NM_003081 HPRD:02637 SNAP25 RIC-4|RIC4|SEC9|SNAP|SNAP-25|bA416N4.2|dJ1068F16.2 synaptosomal-associated protein, 25kDa protein-coding 13-PTNLD9-TUMOR_peak_47780 chr7 67681105 67681332 + 15.21858 NA Intergenic Intergenic 195978 NR_120514 102723427 Hs.583491 NR_120514 LOC102723427 - uncharacterized LOC102723427 ncRNA 13-PTNLD9-TUMOR_peak_20979 chr17 37641948 37642134 + 15.21858 NA intron (NM_015083, intron 2 of 13) AluJb|SINE|Alu 24277 NM_015083 51755 Hs.416108 NM_015083 HPRD:10849 CDK12 CRK7|CRKR|CRKRS cyclin-dependent kinase 12 protein-coding 13-PTNLD9-TUMOR_peak_49108 chr7 130933822 130934103 + 15.21858 NA intron (NM_001145354, intron 2 of 18) intron (NM_001145354, intron 2 of 18) 78576 NR_125364 100506881 Hs.660830 NR_125364 ENSG00000236753 MKLN1-AS MKLN1-AS2 MKLN1 antisense RNA ncRNA 13-PTNLD9-TUMOR_peak_16476 chr14 93502295 93502450 + 15.21858 NA intron (NM_001142593, intron 3 of 10) intron (NM_001142593, intron 3 of 10) -31425 NR_002808 319085 Hs.612888 NR_002808 ENSG00000258730 ITPK1-AS1 C14orf85|ITPK1-AS|ITPK1AS|NCRNA00203 ITPK1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_2844 chr1 111888801 111888999 + 15.21858 NA promoter-TSS (NM_181643) promoter-TSS (NM_181643) -282 NM_001300831 128344 Hs.172510 NM_181643 HPRD:14040 PIFO C1orf88|pitchfork primary cilia formation protein-coding 13-PTNLD9-TUMOR_peak_16148 chr14 69568125 69568488 + 15.21858 NA intron (NM_001284206, intron 5 of 8) intron (NM_001284206, intron 5 of 8) 51010 NM_001284207 8816 Hs.509780 NM_003861 HPRD:16032 DCAF5 BCRG2|BCRP2|D14S1461E|WDR22 DDB1 and CUL4 associated factor 5 protein-coding 13-PTNLD9-TUMOR_peak_56582 chrX 148586830 148586970 + 15.21858 NA promoter-TSS (NM_000202) promoter-TSS (NM_000202) -16 NR_104128 3423 Hs.460960 NM_000202 HPRD:02402 IDS MPS2|SIDS iduronate 2-sulfatase protein-coding 13-PTNLD9-TUMOR_peak_40184 chr5 1327246 1327664 + 15.21279 NA intron (NM_030782, intron 9 of 16) intron (NM_030782, intron 9 of 16) 17547 NM_030782 81037 Hs.444673 NM_030782 HPRD:07480 CLPTM1L CRR9 CLPTM1-like protein-coding 13-PTNLD9-TUMOR_peak_19681 chr16 70285611 70285989 + 15.20930 NA promoter-TSS (NM_058219) promoter-TSS (NM_058219) 33 NM_058219 118460 Hs.660633 NM_058219 HPRD:12107 EXOSC6 EAP4|MTR3|Mtr3p|hMtr3p|p11 exosome component 6 protein-coding 13-PTNLD9-TUMOR_peak_33195 chr22 36635546 36635802 + 15.20930 NA promoter-TSS (NM_030882) promoter-TSS (NM_030882) 15 NM_030882 23780 Hs.474740 NM_030882 HPRD:06263 APOL2 APOL-II|APOL3 apolipoprotein L, 2 protein-coding 13-PTNLD9-TUMOR_peak_12069 chr12 8179628 8179866 + 15.20930 NA Intergenic Intergenic -5612 NM_018416 55810 Hs.120844 NM_018416 HPRD:17014 FOXJ2 FHX forkhead box J2 protein-coding 13-PTNLD9-TUMOR_peak_35662 chr3 124829559 124829767 + 15.20930 NA intron (NM_024628, intron 8 of 13) intron (NM_024628, intron 8 of 13) 40733 NR_049815 100847039 NR_049815 MIR5092 - microRNA 5092 ncRNA 13-PTNLD9-TUMOR_peak_28166 chr2 114601134 114601487 + 15.20930 NA intron (NR_110174, intron 2 of 4) intron (NR_110174, intron 2 of 4) -46201 NR_102318 10096 Hs.433512 NM_005721 HPRD:05024 ACTR3 ARP3 ARP3 actin-related protein 3 homolog (yeast) protein-coding 13-PTNLD9-TUMOR_peak_721 chr1 25010139 25010503 + 15.20930 NA Intergenic LTR23|LTR|ERV1 40727 NM_005839 10250 Hs.18192 NM_005839 HPRD:10441 SRRM1 160-KD|POP101|SRM160 serine/arginine repetitive matrix 1 protein-coding 13-PTNLD9-TUMOR_peak_22660 chr18 13382013 13382162 + 15.20566 NA intron (NM_181482, intron 2 of 5) intron (NM_181482, intron 2 of 5) 45446 NR_040031 100288122 Hs.646264 NR_040031 ENSG00000267690 LDLRAD4-AS1 - LDLRAD4 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_44265 chr6 26571878 26572327 + 15.20473 NA Intergenic tRNA-Ala-GCY|tRNA|tRNA -25069 NM_013375 29777 Hs.254406 NM_013375 HPRD:16469 ABT1 hABT1 activator of basal transcription 1 protein-coding 13-PTNLD9-TUMOR_peak_10183 chr11 64736703 64737045 + 15.20473 NA intron (NM_001300803, intron 1 of 8) L2|LINE|L2 2689 NM_001300803 283129 Hs.567793 NM_001037225 HPRD:18761 C11orf85 - chromosome 11 open reading frame 85 protein-coding 13-PTNLD9-TUMOR_peak_48007 chr7 75522262 75522595 + 15.20473 NA Intergenic Intergenic 14111 NM_001040457 57414 Hs.488827 NM_020684 HPRD:11492 RHBDD2 NPD007|RHBDL7 rhomboid domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_34597 chr3 50354191 50354586 + 15.20473 NA TTS (NM_033158) TTS (NM_033158) -4576 NM_153281 3373 Hs.75619 NM_033159 HPRD:06146 HYAL1 HYAL-1|LUCA1|NAT6 hyaluronoglucosaminidase 1 protein-coding 13-PTNLD9-TUMOR_peak_45147 chr6 44231286 44231417 + 15.20473 NA intron (NM_004556, intron 1 of 5) intron (NM_004556, intron 1 of 5) 2174 NM_004556 4794 Hs.458276 NM_004556 HPRD:05181 NFKBIE IKBE nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon protein-coding 13-PTNLD9-TUMOR_peak_41879 chr5 123032818 123033014 + 15.20462 NA Intergenic Intergenic 151805 NM_004384 1456 Hs.129206 NM_004384 HPRD:05034 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1, gamma 3 protein-coding 13-PTNLD9-TUMOR_peak_5219 chr1 205561134 205561418 + 15.20462 NA exon (NM_181644, exon 7 of 10) exon (NM_181644, exon 7 of 10) 23164 NM_181644 148808 Hs.567714 NM_181644 HPRD:13228 MFSD4 UNQ3064 major facilitator superfamily domain containing 4 protein-coding 13-PTNLD9-TUMOR_peak_745 chr1 26218854 26219215 + 15.20462 NA intron (NM_001145454, intron 4 of 4) MIR3|SINE|MIR 13610 NM_203401 3925 Hs.209983 NM_005563 HPRD:01047 STMN1 C1orf215|LAP18|Lag|OP18|PP17|PP19|PR22|SMN stathmin 1 protein-coding 13-PTNLD9-TUMOR_peak_10625 chr11 74303520 74303915 + 15.20462 NA promoter-TSS (NR_046410) promoter-TSS (NR_046410) 67 NR_046410 10714 Hs.82502 NM_006591 HPRD:11446 POLD3 P66|P68|PPP1R128 polymerase (DNA-directed), delta 3, accessory subunit protein-coding 13-PTNLD9-TUMOR_peak_37531 chr4 611521 611957 + 15.20462 NA Intergenic MER70B|LTR|ERVL -7624 NM_000283 5158 Hs.623810 NM_000283 HPRD:01571 PDE6B CSNB3|CSNBAD2|PDEB|RP40|rd1 phosphodiesterase 6B, cGMP-specific, rod, beta protein-coding 13-PTNLD9-TUMOR_peak_34505 chr3 48635806 48636040 + 15.20462 NA TTS (NM_003365) TTS (NM_003365) -3330 NM_000094 1294 Hs.476218 NM_000094 HPRD:00358 COL7A1 EBD1|EBDCT|EBR1 collagen, type VII, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_35499 chr3 119301117 119301394 + 15.19494 NA exon (NM_001125, exon 3 of 5) exon (NM_001125, exon 3 of 5) 2975 NM_001291950 141 Hs.99884 NM_001125 HPRD:04359 ADPRH ARH1 ADP-ribosylarginine hydrolase protein-coding 13-PTNLD9-TUMOR_peak_49174 chr7 133538454 133538778 + 15.19053 NA intron (NM_021807, intron 11 of 17) intron (NM_021807, intron 11 of 17) -28975 NR_120513 101928861 Hs.675747 NR_120513 LOC101928861 - uncharacterized LOC101928861 ncRNA 13-PTNLD9-TUMOR_peak_39257 chr4 123819627 123819860 + 15.18299 NA TTS (NM_002006) TTS (NM_002006) 24018 NM_007083 11162 Hs.558459 NM_007083 HPRD:05880 NUDT6 ASFGF2|FGF-AS|FGF2AS|GFG-1|GFG1 nudix (nucleoside diphosphate linked moiety X)-type motif 6 protein-coding 13-PTNLD9-TUMOR_peak_7635 chr10 72091570 72091945 + 15.18299 NA intron (NR_103467, intron 1 of 2) intron (NR_103467, intron 1 of 2) 44778 NM_001278213 55222 Hs.7778 NM_018205 HPRD:14314 LRRC20 - leucine rich repeat containing 20 protein-coding 13-PTNLD9-TUMOR_peak_35440 chr3 114618544 114618729 + 15.18299 NA intron (NM_001164343, intron 3 of 11) intron (NM_001164343, intron 3 of 11) 833 NR_121662 26137 Hs.202577 NM_015642 HPRD:05822 ZBTB20 DPZF|HOF|ODA-8S|ZNF288 zinc finger and BTB domain containing 20 protein-coding 13-PTNLD9-TUMOR_peak_46168 chr6 140858973 140859235 + 15.18299 NA Intergenic Intergenic -145847 NR_039675 100616180 NR_039675 miRBase:MI0016816 MIR4465 - microRNA 4465 ncRNA 13-PTNLD9-TUMOR_peak_28761 chr2 153503378 153503593 + 15.18299 NA intron (NM_052905, intron 25 of 25) intron (NM_052905, intron 25 of 25) 70490 NM_017892 55660 Hs.643580 NM_017892 ENSG00000196504 PRPF40A FBP-11|FBP11|FLAF1|FNBP3|HIP-10|HIP10|HYPA|NY-REN-6|Prp40 PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_48602 chr7 101258258 101258480 + 15.18299 NA intron (NM_138403, intron 6 of 7) intron (NM_138403, intron 6 of 7) 14207 NM_138403 93408 Hs.247831 NM_138403 HPRD:17620 MYL10 MYLC2PL|PLRLC myosin, light chain 10, regulatory protein-coding 13-PTNLD9-TUMOR_peak_2009 chr1 61957209 61957480 + 15.18299 NA Intergenic ERVL-E-int|LTR|ERVL -162570 NR_073400 414927 Hs.123471 NR_073400 MGC34796 - sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) pseudogene pseudo 13-PTNLD9-TUMOR_peak_34153 chr3 29527671 29527947 + 15.18299 NA intron (NM_001003792, intron 2 of 13) intron (NM_001003792, intron 2 of 13) 205006 NM_001177711 27303 Hs.221436 NM_014483 HPRD:16155 RBMS3 - RNA binding motif, single stranded interacting protein 3 protein-coding 13-PTNLD9-TUMOR_peak_41828 chr5 118371904 118372100 + 15.18299 NA Intergenic Intergenic -35082 NM_001290322 1657 Hs.181042 NM_005509 HPRD:09294 DMXL1 - Dmx-like 1 protein-coding 13-PTNLD9-TUMOR_peak_35124 chr3 94853817 94854200 + 15.18299 NA Intergenic MER72B|LTR|ERV1 196901 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 13-PTNLD9-TUMOR_peak_2574 chr1 95328322 95328618 + 15.17622 NA intron (NM_001301079, intron 9 of 13) intron (NM_001301079, intron 9 of 13) 42370 NM_152369 126969 Hs.483423 NM_152369 HPRD:14637 SLC44A3 CTL3 solute carrier family 44, member 3 protein-coding 13-PTNLD9-TUMOR_peak_47960 chr7 74214822 74214967 + 15.17622 NA intron (NM_173537, intron 15 of 15).2 intron (NM_173537, intron 15 of 15).2 26585 NM_000265 653361 Hs.647047 NM_000265 ENSG00000158517 NCF1 NCF1A|NOXO2|SH3PXD1A|p47phox neutrophil cytosolic factor 1 protein-coding 13-PTNLD9-TUMOR_peak_37679 chr4 3723451 3723622 + 15.17622 NA Intergenic Intergenic -43954 NR_034136 100133461 Hs.554274 NR_034136 ENSG00000250632 LOC100133461 - uncharacterized LOC100133461 ncRNA 13-PTNLD9-TUMOR_peak_16984 chr15 33494115 33494406 + 15.17622 NA Intergenic Intergenic -7326 NM_001277313 342184 Hs.657649 NM_198500 HPRD:07031 FMN1 FMN|LD formin 1 protein-coding 13-PTNLD9-TUMOR_peak_34269 chr3 38072562 38073050 + 15.16691 NA Intergenic Intergenic -1652 NM_006225 5333 Hs.80776 NM_006225 HPRD:09073 PLCD1 NDNC3|PLC-III phospholipase C, delta 1 protein-coding 13-PTNLD9-TUMOR_peak_42393 chr5 141258631 141259039 + 15.16691 NA promoter-TSS (NM_002587) promoter-TSS (NM_002587) -860 NM_032420 5097 Hs.79769 NM_002587 HPRD:04692 PCDH1 PC42|PCDH42 protocadherin 1 protein-coding 13-PTNLD9-TUMOR_peak_49390 chr7 140356385 140356623 + 15.16691 NA Intergenic HERV3-int|LTR|ERV1 -16449 NM_052853 90956 Hs.744886 NM_052853 HPRD:10631 ADCK2 AARF aarF domain containing kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_42689 chr5 150970807 150971014 + 15.16321 NA Intergenic Intergenic -22405 NM_001447 2196 Hs.591255 NM_001447 HPRD:05041 FAT2 CDHF8|CDHR9|HFAT2|MEGF1 FAT atypical cadherin 2 protein-coding 13-PTNLD9-TUMOR_peak_44983 chr6 41673678 41674159 + 15.16321 NA intron (NM_001167827, intron 1 of 8) intron (NM_001167827, intron 1 of 8) 28221 NM_001271945 7942 Hs.485360 NM_007162 HPRD:02847 TFEB ALPHATFEB|BHLHE35|TCFEB transcription factor EB protein-coding 13-PTNLD9-TUMOR_peak_35658 chr3 124786101 124786366 + 15.16154 NA Intergenic L2c|LINE|L2 -11431 NM_020733 57493 Hs.477420 NM_020733 ENSG00000173706 HEG1 HEG|MST112|MSTP112 heart development protein with EGF-like domains 1 protein-coding 13-PTNLD9-TUMOR_peak_49893 chr7 158820102 158820375 + 15.16154 NA TTS (NM_003382) TTS (NM_003382) 19193 NR_024394 154822 Hs.544783 NM_198345 ENSG00000231419 LINC00689 - long intergenic non-protein coding RNA 689 ncRNA 13-PTNLD9-TUMOR_peak_1961 chr1 59608826 59609052 + 15.15904 NA intron (NR_027120, intron 1 of 2) intron (NR_027120, intron 1 of 2) 3540 NR_027120 729467 Hs.662291 NR_027120 ENSG00000224609 HSD52 - uncharacterized LOC729467 ncRNA 13-PTNLD9-TUMOR_peak_53090 chr9 34745074 34745242 + 15.15904 NA Intergenic Intergenic -15623 NM_001141917 259308 Hs.522093 NM_001141917 ENSG00000205108 FAM205A C9orf144B family with sequence similarity 205, member A protein-coding 13-PTNLD9-TUMOR_peak_14065 chr12 121107381 121107641 + 15.15904 NA Intergenic AluSx|SINE|Alu -17438 NM_014730 9761 Hs.744910 NM_014730 HPRD:13781 MLEC KIAA0152 malectin protein-coding 13-PTNLD9-TUMOR_peak_45157 chr6 44443561 44443683 + 15.15904 NA Intergenic Intergenic 40244 NR_039785 100616352 NR_039785 MIR4642 - microRNA 4642 ncRNA 13-PTNLD9-TUMOR_peak_42851 chr5 159602762 159602916 + 15.15904 NA Intergenic Intergenic -11535 NM_001130958 2172 Hs.519719 NM_001445 HPRD:02689 FABP6 I-15P|I-BABP|I-BALB|I-BAP|ILBP|ILBP3|ILLBP fatty acid binding protein 6, ileal protein-coding 13-PTNLD9-TUMOR_peak_42407 chr5 141595438 141595817 + 15.15904 NA Intergenic Intergenic 107303 NM_030571 80762 Hs.9788 NM_030571 HPRD:14816 NDFIP1 N4WBP5 Nedd4 family interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_25880 chr1_gl000192_random 191418 191634 + 15.15904 NA intron (NR_103556, intron 33 of 45) intron (NR_103556, intron 33 of 45) 215984 NR_103556 100288805 Hs.648712 NR_049745 HYDIN2 HYDINP1 HYDIN2, axonemal central pair apparatus protein (pseudogene) pseudo 13-PTNLD9-TUMOR_peak_3674 chr1 152224745 152224944 + 15.15904 NA Intergenic MLT1H1|LTR|ERVL-MaLR -28172 NM_001009931 388697 Hs.490162 NM_001009931 HPRD:17114 HRNR FLG3|S100A16|S100a18 hornerin protein-coding 13-PTNLD9-TUMOR_peak_51489 chr8 103803270 103803735 + 15.15632 NA Intergenic Intergenic 72895 NM_148174 51582 Hs.459106 NM_015878 HPRD:07443 AZIN1 OAZI|OAZIN|ODC1L antizyme inhibitor 1 protein-coding 13-PTNLD9-TUMOR_peak_3849 chr1 155157940 155158184 + 15.15588 NA TTS (NM_001204295) TTS (NM_001204295) 4644 NM_001204289 4582 Hs.89603 NM_002456 HPRD:01152 MUC1 ADMCKD|ADMCKD1|CA 15-3|CD227|EMA|H23AG|KL-6|MAM6|MCD|MCKD|MCKD1|MUC-1|MUC-1/SEC|MUC-1/X|MUC1/ZD|PEM|PEMT|PUM mucin 1, cell surface associated protein-coding 13-PTNLD9-TUMOR_peak_4039 chr1 159131289 159131498 + 15.15417 NA Intergenic MIRb|SINE|MIR -9984 NM_021189 57863 Hs.365689 NM_021189 HPRD:13733 CADM3 BIgR|IGSF4B|NECL1|Necl-1|TSLL1|synCAM3 cell adhesion molecule 3 protein-coding 13-PTNLD9-TUMOR_peak_19456 chr16 57844289 57844469 + 15.15417 NA promoter-TSS (NM_001278081) promoter-TSS (NM_001278081) -170 NM_001278081 388282 Hs.434720 NM_001278081 LOC388282 - uncharacterized LOC388282 protein-coding 13-PTNLD9-TUMOR_peak_30559 chr20 19860879 19861173 + 15.15417 NA Intergenic Intergenic -6139 NM_001242581 54453 Hs.472270 NM_018993 HPRD:15249 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 13-PTNLD9-TUMOR_peak_29032 chr2 170430311 170430526 + 15.15417 NA promoter-TSS (NM_024622) promoter-TSS (NM_024622) 13 NR_104020 79675 Hs.529276 NM_024622 HPRD:07969 FASTKD1 - FAST kinase domains 1 protein-coding 13-PTNLD9-TUMOR_peak_25904 chr2 33688 33858 + 15.15157 NA Intergenic Intergenic 12815 NM_001077710 642273 Hs.8379 NM_001077710 FAM110C - family with sequence similarity 110, member C protein-coding 13-PTNLD9-TUMOR_peak_17028 chr15 35989042 35989169 + 15.15157 NA intron (NR_038251, intron 1 of 2) intron (NR_038251, intron 1 of 2) -150701 NM_001141972 89978 Hs.107196 NM_080650 HPRD:14443 DPH6 ATPBD4 diphthamine biosynthesis 6 protein-coding 13-PTNLD9-TUMOR_peak_52676 chr9 4833209 4833347 + 15.15157 NA intron (NM_001286699, intron 2 of 6) intron (NM_001286699, intron 2 of 6) -6491 NM_001286701 10171 Hs.194121 NM_005772 HPRD:10189 RCL1 RNAC|RPCL1 RNA terminal phosphate cyclase-like 1 protein-coding 13-PTNLD9-TUMOR_peak_42050 chr5 132012931 132013129 + 15.15157 NA intron (NM_000589, intron 2 of 3) intron (NM_000589, intron 2 of 3) 3352 NM_000589 3565 Hs.73917 NM_000589 HPRD:00989 IL4 BCGF-1|BCGF1|BSF-1|BSF1|IL-4 interleukin 4 protein-coding 13-PTNLD9-TUMOR_peak_3678 chr1 152409190 152409357 + 15.15121 NA Intergenic Intergenic -22523 NM_016190 49860 Hs.242057 NM_016190 HPRD:12720 CRNN C1orf10|DRC1|PDRC1|SEP53 cornulin protein-coding 13-PTNLD9-TUMOR_peak_43479 chr6 2875484 2875652 + 15.15121 NA intron (NR_033851, intron 1 of 1) intron (NR_033851, intron 1 of 1) 1176 NR_033851 221756 Hs.8162 NM_182544 SERPINB9P1 SERPINB9P serpin peptidase inhibitor, clade B (ovalbumin), member 9, pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_4702 chr1 183256488 183256750 + 15.15121 NA intron (NM_170706, intron 4 of 10) intron (NM_170706, intron 4 of 10) 17390 NM_170706 23057 Hs.497123 NM_015039 HPRD:09786 NMNAT2 C1orf15|PNAT2 nicotinamide nucleotide adenylyltransferase 2 protein-coding 13-PTNLD9-TUMOR_peak_29816 chr2 218799068 218799533 + 15.15121 NA intron (NM_022648, intron 1 of 32) intron (NM_022648, intron 1 of 32) 9496 NM_022648 7145 Hs.471381 NM_022648 HPRD:02512 TNS1 MST091|MST122|MST127|MSTP122|MSTP127|MXRA6|PPP1R155|TNS tensin 1 protein-coding 13-PTNLD9-TUMOR_peak_29191 chr2 178077829 178078084 + 15.14764 NA TTS (NR_039646) TTS (NR_039646) 502 NR_039646 100616394 NR_039646 miRBase:MI0016787 MIR4444-1 MIR4444|hsa-mir-4444-1 microRNA 4444-1 ncRNA 13-PTNLD9-TUMOR_peak_21991 chr17 73426472 73426690 + 15.13363 NA Intergenic Intergenic 24431 NR_037449 100500841 NR_037449 miRBase:MI0016079 MIR3678 - microRNA 3678 ncRNA 13-PTNLD9-TUMOR_peak_1672 chr1 47791281 47791475 + 15.13363 NA Intergenic Intergenic -8091 NM_016308 51727 Hs.731647 NM_016308 HPRD:18258 CMPK1 CK|CMK|CMPK|UMK|UMP-CMPK|UMPK cytidine monophosphate (UMP-CMP) kinase 1, cytosolic protein-coding 13-PTNLD9-TUMOR_peak_37610 chr4 2257374 2257759 + 15.13363 NA intron (NM_006454, intron 3 of 5) intron (NM_006454, intron 3 of 5) -5683 NR_039964 100616358 NR_039964 miRBase:MI0017448 MIR4800 - microRNA 4800 ncRNA 13-PTNLD9-TUMOR_peak_40303 chr5 10452957 10453154 + 15.13363 NA intron (NM_031916, intron 3 of 4) intron (NM_031916, intron 3 of 4) 11081 NM_001201466 83853 Hs.381089 NM_031916 HPRD:17986 ROPN1L ASP|RSPH11 rhophilin associated tail protein 1-like protein-coding 13-PTNLD9-TUMOR_peak_30868 chr20 33906307 33906606 + 15.13002 NA intron (NM_018244, intron 7 of 9) intron (NM_018244, intron 7 of 9) -26231 NM_178468 128876 Hs.592149 NM_178468 HPRD:12743 FAM83C C20orf128|dJ614O4.7 family with sequence similarity 83, member C protein-coding 13-PTNLD9-TUMOR_peak_37673 chr4 3658257 3658490 + 15.11740 NA Intergenic Intergenic 21209 NR_034136 100133461 Hs.554274 NR_034136 ENSG00000250632 LOC100133461 - uncharacterized LOC100133461 ncRNA 13-PTNLD9-TUMOR_peak_34580 chr3 50174340 50174502 + 15.11740 NA Intergenic Intergenic -18427 NM_004186 6405 Hs.32981 NM_004186 HPRD:03079 SEMA3F SEMA-IV|SEMA4|SEMAK sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F protein-coding 13-PTNLD9-TUMOR_peak_30875 chr20 34026939 34027223 + 15.11740 NA Intergenic AluY|SINE|Alu -1111 NM_000557 8200 Hs.1573 NM_000557 HPRD:03092 GDF5 BDA1C|BMP-14|BMP14|CDMP1|LAP-4|LAP4|OS5|SYM1B|SYNS2 growth differentiation factor 5 protein-coding 13-PTNLD9-TUMOR_peak_29198 chr2 178202922 178203132 + 15.11740 NA intron (NR_026966, intron 2 of 8) ERVL-E-int|LTR|ERVL -24417 NR_106767 102465255 NR_106767 MIR6512 hsa-mir-6512 microRNA 6512 ncRNA 13-PTNLD9-TUMOR_peak_16534 chr14 97990380 97990595 + 15.11740 NA intron (NR_110166, intron 2 of 4) L2c|LINE|L2 65334 NR_110166 101929241 Hs.650839 NR_110165 ENSG00000246084 LOC101929241 - uncharacterized LOC101929241 ncRNA 13-PTNLD9-TUMOR_peak_12900 chr12 53822117 53822352 + 15.11740 NA intron (NM_020547, intron 6 of 10) intron (NM_020547, intron 6 of 10) 4595 NM_001164691 269 Hs.659889 NM_020547 HPRD:02978 AMHR2 AMHR|MISR2|MISRII|MRII anti-Mullerian hormone receptor, type II protein-coding 13-PTNLD9-TUMOR_peak_44681 chr6 33400854 33401033 + 15.11740 NA intron (NM_006772, intron 5 of 18) intron (NM_006772, intron 5 of 18) -5165 NR_049800 100847012 NR_049800 MIR5004 - microRNA 5004 ncRNA 13-PTNLD9-TUMOR_peak_53738 chr9 81836114 81836375 + 15.11740 NA Intergenic LTR78|LTR|ERV1 -75663 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 13-PTNLD9-TUMOR_peak_45332 chr6 53381933 53382095 + 15.11740 NA intron (NM_001498, intron 3 of 15) AluJo|SINE|Alu 27913 NM_001197115 2729 Hs.654465 NM_001498 HPRD:06032 GCLC GCL|GCS|GLCL|GLCLC glutamate-cysteine ligase, catalytic subunit protein-coding 13-PTNLD9-TUMOR_peak_8860 chr11 3532788 3533025 + 15.11740 NA Intergenic HERVS71-int|LTR|ERV1 -114784 NR_002720 7221 Hs.131910 NR_002720 ENSG00000182048 TRPC2 - transient receptor potential cation channel, subfamily C, member 2, pseudogene pseudo 13-PTNLD9-TUMOR_peak_49300 chr7 138042161 138042759 + 15.11222 NA Intergenic AluYc|SINE|Alu -102619 NM_003852 8805 Hs.490287 NM_003852 HPRD:04556 TRIM24 PTC6|RNF82|TF1A|TIF1|TIF1A|TIF1ALPHA|hTIF1 tripartite motif containing 24 protein-coding 13-PTNLD9-TUMOR_peak_42906 chr5 167704587 167704786 + 15.10464 NA Intergenic Intergenic -14379 NM_001161661 23286 Hs.484047 NM_015238 HPRD:10033 WWC1 HBEBP3|HBEBP36|KIBRA|MEMRYQTL|PPP1R168 WW and C2 domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_50228 chr8 20925448 20925902 + 15.10464 NA Intergenic Intergenic 94178 NR_033894 286114 Hs.651884 NR_033894 ENSG00000253199 LOC286114 - uncharacterized LOC286114 ncRNA 13-PTNLD9-TUMOR_peak_23332 chr18 57383302 57383502 + 15.10001 NA Intergenic Intergenic -18758 NM_133459 147372 Hs.34333 NM_133459 HPRD:08703 CCBE1 - collagen and calcium binding EGF domains 1 protein-coding 13-PTNLD9-TUMOR_peak_9349 chr11 26752356 26752532 + 15.10001 NA Intergenic MER94|DNA|hAT-Blackjack -8870 NM_178498 159963 Hs.148907 NM_178498 HPRD:15395 SLC5A12 SMCT2 solute carrier family 5 (sodium/monocarboxylate cotransporter), member 12 protein-coding 13-PTNLD9-TUMOR_peak_15912 chr14 59742525 59742688 + 15.10001 NA intron (NM_001270520, intron 2 of 24) intron (NM_001270520, intron 2 of 24) 12447 NM_014992 23002 Hs.19156 NM_014992 HPRD:09433 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 13-PTNLD9-TUMOR_peak_6329 chr10 3932211 3932587 + 15.10001 NA Intergenic Intergenic -100953 NR_106726 102464829 NR_106726 MIR6078 hsa-mir-6078 microRNA 6078 ncRNA 13-PTNLD9-TUMOR_peak_18193 chr16 1428999 1429261 + 15.10001 NA intron (NM_001193388, intron 10 of 14) CpG 554 NM_001276414 64718 Hs.643536 NM_023076 HPRD:15612 UNKL C16orf28|ZC3H5L|ZC3HDC5L unkempt family zinc finger-like protein-coding 13-PTNLD9-TUMOR_peak_41713 chr5 110252168 110252345 + 15.10001 NA Intergenic Intergenic -153522 NR_045089 85480 Hs.389874 NM_033035 HPRD:06108 TSLP - thymic stromal lymphopoietin protein-coding 13-PTNLD9-TUMOR_peak_48960 chr7 127816842 127817064 + 15.09766 NA Intergenic Intergenic -30972 NR_029596 406917 NR_029596 miRBase:MI0000252 MIR129-1 MIR-129b|MIRN129-1 microRNA 129-1 ncRNA 13-PTNLD9-TUMOR_peak_54622 chr9 122726144 122726367 + 15.09766 NA Intergenic Intergenic 281073 NR_029604 406939 NR_029604 miRBase:MI0000262 MIR147A MIR147|MIRN147|hsa-mir-147a microRNA 147a ncRNA 13-PTNLD9-TUMOR_peak_6954 chr10 36164237 36164567 + 15.09766 NA Intergenic Intergenic 97172 NR_110138 102578074 NR_110138 LINC01452 PCAT5|TPCAT-10-36067 long intergenic non-protein coding RNA 1452 ncRNA 13-PTNLD9-TUMOR_peak_16324 chr14 77428207 77428541 + 15.09766 NA Intergenic Intergenic 66668 NM_024496 64207 Hs.179260 NM_024496 HPRD:10713 IRF2BPL C14orf4|EAP1 interferon regulatory factor 2 binding protein-like protein-coding 13-PTNLD9-TUMOR_peak_5406 chr1 219477684 219477898 + 15.09766 NA Intergenic MARNA|DNA|TcMar-Mariner 129480 NM_001300772 127018 Hs.657617 NM_138794 HPRD:14335 LYPLAL1 - lysophospholipase-like 1 protein-coding 13-PTNLD9-TUMOR_peak_22941 chr18 33767333 33767657 + 15.09766 NA promoter-TSS (NM_017947) promoter-TSS (NM_017947) 15 NM_017947 55034 Hs.405028 NM_017947 MOCOS HMCS|MCS|MOS molybdenum cofactor sulfurase protein-coding 13-PTNLD9-TUMOR_peak_8915 chr11 6378556 6378772 + 15.09766 NA Intergenic Intergenic -32980 NM_001007593 6609 Hs.498173 NM_000543 HPRD:06353 SMPD1 ASM|ASMASE|NPD sphingomyelin phosphodiesterase 1, acid lysosomal protein-coding 13-PTNLD9-TUMOR_peak_13635 chr12 104514921 104515106 + 15.09766 NA intron (NM_006166, intron 6 of 7) intron (NM_006166, intron 6 of 7) 17027 NM_006166 4801 Hs.84928 NM_006166 HPRD:01794 NFYB CBF-A|CBF-B|HAP3|NF-YB nuclear transcription factor Y, beta protein-coding 13-PTNLD9-TUMOR_peak_20093 chr16 88824803 88824964 + 15.09226 NA intron (NM_001142864, intron 1 of 50) intron (NM_001142864, intron 1 of 50) 15708 NR_120387 339059 Hs.449817 NR_120387 HPRD:08282 LOC339059 - uncharacterized LOC339059 ncRNA 13-PTNLD9-TUMOR_peak_39932 chr4 183161412 183161818 + 15.09165 NA Intergenic Intergenic 71169 NR_031640 100302270 NR_031640 miRBase:MI0006372 MIR1305 MIRN1305|hsa-mir-1305 microRNA 1305 ncRNA 13-PTNLD9-TUMOR_peak_37221 chr3 190304359 190304520 + 15.09165 NA intron (NM_002182, intron 3 of 11) intron (NM_002182, intron 3 of 11) 72599 NM_001167931 3556 Hs.478673 NM_002182 HPRD:04021 IL1RAP C3orf13|IL-1RAcP|IL1R3 interleukin 1 receptor accessory protein protein-coding 13-PTNLD9-TUMOR_peak_35519 chr3 120188464 120188655 + 15.09165 NA Intergenic MER41B|LTR|ERV1 -18641 NM_007085 11167 Hs.269512 NM_007085 FSTL1 FRP|FSL1|MIR198 follistatin-like 1 protein-coding 13-PTNLD9-TUMOR_peak_31639 chr20 55264380 55264744 + 15.07182 NA Intergenic Intergenic 60204 NM_003222 7022 Hs.473152 NM_003222 HPRD:03361 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma) protein-coding 13-PTNLD9-TUMOR_peak_12805 chr12 52510128 52510563 + 15.07182 NA Intergenic HERVE-int|LTR|ERV1 22992 NR_120440 26628 Hs.524431 NR_120437 OR7E47P OR7E141 olfactory receptor, family 7, subfamily E, member 47 pseudogene pseudo 13-PTNLD9-TUMOR_peak_2575 chr1 95329619 95329843 + 15.07182 NA intron (NM_001301079, intron 9 of 13) intron (NM_001301079, intron 9 of 13) 43631 NM_152369 126969 Hs.483423 NM_152369 HPRD:14637 SLC44A3 CTL3 solute carrier family 44, member 3 protein-coding 13-PTNLD9-TUMOR_peak_27456 chr2 85976417 85976674 + 15.07182 NA Intergenic Intergenic -4364 NM_032827 84913 Hs.135569 NM_032827 ATOH8 HATH6|bHLHa21 atonal homolog 8 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_7661 chr10 72761287 72761549 + 15.07182 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR -112875 NM_000281 5092 Hs.3192 NM_000281 HPRD:00523 PCBD1 DCOH|PCBD|PCD|PHS pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha protein-coding 13-PTNLD9-TUMOR_peak_12897 chr12 53766546 53766716 + 15.07166 NA Intergenic Intergenic -7348 NM_138473 6667 Hs.620754 NM_003109 HPRD:01796 SP1 - Sp1 transcription factor protein-coding 13-PTNLD9-TUMOR_peak_33584 chr3 4793130 4793550 + 15.06278 NA promoter-TSS (NR_004428) promoter-TSS (NR_004428) -66 NR_004428 100126791 Hs.663059 NR_004428 ENSG00000235947 EGOT EGO|NCRNA00190 eosinophil granule ontogeny transcript (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_4074 chr1 159929327 159929548 + 15.06228 NA Intergenic LTR78|LTR|ERV1 -1577 NR_038849 100505633 Hs.445045 NR_038849 ENSG00000224259 LINC01133 - long intergenic non-protein coding RNA 1133 ncRNA 13-PTNLD9-TUMOR_peak_16091 chr14 68613649 68613862 + 15.05506 NA intron (NM_133510, intron 7 of 10) intron (NM_133510, intron 7 of 10) 327259 NM_133510 5890 Hs.172587 NM_002877 HPRD:04255 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 13-PTNLD9-TUMOR_peak_2063 chr1 64435348 64435574 + 15.05506 NA intron (NM_001083592, intron 1 of 6) intron (NM_001083592, intron 1 of 6) 142427 NR_110666 101927034 Hs.680824 NR_110665 ENSG00000223949 ROR1-AS1 - ROR1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_52185 chr8 134664167 134664477 + 15.05506 NA Intergenic L2c|LINE|L2 -80139 NM_003033 6482 Hs.374257 NM_003033 HPRD:06219 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_36763 chr3 172564572 172564758 + 15.05506 NA Intergenic Intergenic 96190 NM_001258315 1894 Hs.518299 NM_018098 HPRD:11860 ECT2 ARHGEF31 epithelial cell transforming 2 protein-coding 13-PTNLD9-TUMOR_peak_5743 chr1 228945443 228946001 + 15.05506 NA Intergenic Intergenic 74898 NM_021205 58480 Hs.647774 NM_021205 HPRD:06965 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 13-PTNLD9-TUMOR_peak_28455 chr2 131582098 131582393 + 15.05506 NA Intergenic Intergenic 68381 NM_001105195 205147 Hs.369289 NM_152698 HPRD:08241 AMER3 FAM123C APC membrane recruitment protein 3 protein-coding 13-PTNLD9-TUMOR_peak_18454 chr16 9373168 9373389 + 15.05231 NA Intergenic Intergenic 44504 NR_036166 100422920 NR_036166 miRBase:MI0014244 MIR548X - microRNA 548x ncRNA 13-PTNLD9-TUMOR_peak_53828 chr9 87466922 87467073 + 15.05231 NA intron (NM_001018064, intron 11 of 16) intron (NM_001018064, intron 11 of 16) 181705 NM_001018064 4915 Hs.494312 NM_006180 HPRD:02712 NTRK2 GP145-TrkB|TRKB|trk-B neurotrophic tyrosine kinase, receptor, type 2 protein-coding 13-PTNLD9-TUMOR_peak_48571 chr7 100781841 100782060 + 15.05231 NA 3' UTR (NM_000602, exon 9 of 9) 3' UTR (NM_000602, exon 9 of 9) 11580 NM_000602 5054 Hs.414795 NM_000602 HPRD:01418 SERPINE1 PAI|PAI-1|PAI1|PLANH1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 protein-coding 13-PTNLD9-TUMOR_peak_4889 chr1 199711801 199711950 + 15.05231 NA Intergenic Intergenic -284855 NM_003822 2494 Hs.33446 NM_003822 HPRD:06830 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5, group A, member 2 protein-coding 13-PTNLD9-TUMOR_peak_53646 chr9 75806120 75806307 + 15.05231 NA Intergenic MLT1F2|LTR|ERVL-MaLR 39432 NM_000700 301 Hs.494173 NM_000700 HPRD:01060 ANXA1 ANX1|LPC1 annexin A1 protein-coding 13-PTNLD9-TUMOR_peak_29678 chr2 208370612 208370794 + 15.05231 NA Intergenic Intergenic -23913 NM_134442 1385 Hs.516646 NM_004379 HPRD:00442 CREB1 CREB cAMP responsive element binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_18935 chr16 29471692 29471833 + 15.05016 NA intron (NM_177552, intron 1 of 7).2 AluJr|SINE|Alu 555 NM_177552 6818 Hs.460558 NM_003166 HPRD:07199 SULT1A3 HAST|HAST3|M-PST|ST1A3/ST1A4|ST1A5|STM|TL-PST sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3 protein-coding 13-PTNLD9-TUMOR_peak_46399 chr6 157733975 157734093 + 15.05006 NA intron (NM_018452, intron 3 of 3) intron (NM_018452, intron 3 of 3) 11257 NM_018452 729515 Hs.157212 NM_018452 ENSG00000215712 TMEM242 BM033|C6orf35 transmembrane protein 242 protein-coding 13-PTNLD9-TUMOR_peak_43193 chr5 176829583 176829935 + 15.04893 NA intron (NM_000505, intron 12 of 13) intron (NM_000505, intron 12 of 13) -2122 NM_001029886 345456 Hs.130196 NM_001029886 ENSG00000196570 PFN3 - profilin 3 protein-coding 13-PTNLD9-TUMOR_peak_47450 chr7 48124559 48124836 + 15.04893 NA Intergenic Intergenic -3503 NM_001287426 7378 Hs.488240 NM_003364 HPRD:08932 UPP1 UDRPASE|UP|UPASE|UPP uridine phosphorylase 1 protein-coding 13-PTNLD9-TUMOR_peak_36682 chr3 170019245 170019582 + 15.04393 NA intron (NM_002740, intron 17 of 17) L2|LINE|L2 -56060 NM_001145098 6498 Hs.536655 NM_005414 HPRD:01319 SKIL SNO|SnoA|SnoI|SnoN SKI-like proto-oncogene protein-coding 13-PTNLD9-TUMOR_peak_29702 chr2 209233904 209234148 + 15.04393 NA intron (NR_073601, intron 1 of 12) MER34-int|LTR|ERV1 9457 NR_073601 5746 Hs.570296 NM_005048 HPRD:03276 PTH2R PTHR2 parathyroid hormone 2 receptor protein-coding 13-PTNLD9-TUMOR_peak_6067 chr1 241754644 241754908 + 15.04393 NA intron (NM_003679, intron 14 of 14) intron (NM_003679, intron 14 of 14) 44456 NM_001821 1122 Hs.654545 NM_001821 HPRD:00341 CHML REP2 choroideremia-like (Rab escort protein 2) protein-coding 13-PTNLD9-TUMOR_peak_823 chr1 27884430 27884760 + 15.04393 NA intron (NM_001029882, intron 3 of 6) intron (NM_001029882, intron 3 of 6) 45410 NM_001029882 27245 Hs.469280 NM_001029882 HPRD:10885 AHDC1 MRD25 AT hook, DNA binding motif, containing 1 protein-coding 13-PTNLD9-TUMOR_peak_5427 chr1 220510790 220510978 + 15.04393 NA Intergenic Intergenic -65041 NM_012414 25782 Hs.654849 NM_012414 HPRD:11471 RAB3GAP2 RAB3-GAP150|RAB3GAP150|SPG69|WARBM2|p150 RAB3 GTPase activating protein subunit 2 (non-catalytic) protein-coding 13-PTNLD9-TUMOR_peak_14173 chr12 123547415 123547797 + 15.04393 NA intron (NM_001300801, intron 1 of 24) intron (NM_001300801, intron 1 of 24) -18325 NR_038290 100507091 Hs.683912 NR_038290 ENSG00000251497 LOC100507091 - uncharacterized LOC100507091 ncRNA 13-PTNLD9-TUMOR_peak_37669 chr4 3568260 3568435 + 15.04393 NA Intergenic L1MC4|LINE|L1 -10249 NR_040045 285492 Hs.145563 NM_173661 LINC00955 - long intergenic non-protein coding RNA 955 ncRNA 13-PTNLD9-TUMOR_peak_41968 chr5 127563790 127564009 + 15.04393 NA Intergenic Intergenic 144416 NR_046207 6558 Hs.162585 NM_001046 HPRD:06775 SLC12A2 BSC|BSC2|NKCC1|PPP1R141 solute carrier family 12 (sodium/potassium/chloride transporter), member 2 protein-coding 13-PTNLD9-TUMOR_peak_30811 chr20 32366442 32366595 + 15.04393 NA intron (NR_104259, intron 10 of 13) intron (NR_104259, intron 10 of 13) 32387 NR_110623 101929746 Hs.504633 NR_110623 ENSG00000230753 ZNF341-AS1 - ZNF341 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_27817 chr2 100496686 100496961 + 15.04155 NA intron (NM_001025108, intron 6 of 23) intron (NM_001025108, intron 6 of 23) 225222 NM_001025108 3899 Hs.444414 NM_002285 HPRD:03272 AFF3 LAF4|MLLT2-like AF4/FMR2 family, member 3 protein-coding 13-PTNLD9-TUMOR_peak_14657 chr13 42184561 42184921 + 15.04155 NA intron (NM_015058, intron 39 of 44) intron (NM_015058, intron 39 of 44) -42210 NR_049803 100847026 NR_049803 MIR5006 - microRNA 5006 ncRNA 13-PTNLD9-TUMOR_peak_5524 chr1 223816020 223816176 + 15.04155 NA intron (NM_001143962, intron 3 of 16) intron (NM_001143962, intron 3 of 16) 37338 NM_001143962 388743 Hs.291487 NM_001143962 CAPN8 nCL-2 calpain 8 protein-coding 13-PTNLD9-TUMOR_peak_41098 chr5 66597148 66597417 + 15.04155 NA Intergenic Intergenic -104665 NM_005582 4064 Hs.87205 NM_005582 HPRD:03749 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 13-PTNLD9-TUMOR_peak_38754 chr4 84129001 84129209 + 15.04155 NA Intergenic LTR19A|LTR|ERV1 76962 NM_015697 27235 Hs.144304 NM_015697 HPRD:13062 COQ2 CL640|COQ10D1|MSA1 coenzyme Q2 4-hydroxybenzoate polyprenyltransferase protein-coding 13-PTNLD9-TUMOR_peak_33733 chr3 10315613 10315790 + 15.04155 NA intron (NM_014760, intron 4 of 7) intron (NM_014760, intron 4 of 7) -6935 NR_024145 100126793 Hs.672979 NR_004431 ENSG00000240288 GHRLOS GHRL-AS1|GHRLAS|NCRNA00068 ghrelin opposite strand/antisense RNA ncRNA 13-PTNLD9-TUMOR_peak_29511 chr2 201468782 201468991 + 15.04155 NA intron (NM_001159, intron 8 of 34) intron (NM_001159, intron 8 of 34) 18155 NM_001159 316 Hs.406238 NM_001159 HPRD:07537 AOX1 AO|AOH1 aldehyde oxidase 1 protein-coding 13-PTNLD9-TUMOR_peak_22930 chr18 33518186 33518378 + 15.04155 NA Intergenic Tigger10|DNA|TcMar-Tigger -33393 NR_029616 406963 NR_029616 miRBase:MI0000274 MIR187 MIRN187|miR-187|miRNA187 microRNA 187 ncRNA 13-PTNLD9-TUMOR_peak_34392 chr3 44925461 44925886 + 15.04155 NA intron (NM_003241, intron 1 of 13) MER5B|DNA|hAT-Charlie 9575 NM_003241 7047 Hs.438265 NM_003241 HPRD:08997 TGM4 TGP|hTGP transglutaminase 4 protein-coding 13-PTNLD9-TUMOR_peak_46339 chr6 152222207 152222656 + 15.04155 NA intron (NM_001291230, intron 4 of 8) L1PBa1|LINE|L1 93617 NM_000125 2099 Hs.208124 NM_000125 HPRD:00589 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_34758 chr3 57960590 57960760 + 15.03241 NA Intergenic Intergenic -33452 NM_001457 2317 Hs.476448 NM_001457 HPRD:04543 FLNB ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP filamin B, beta protein-coding 13-PTNLD9-TUMOR_peak_43480 chr6 2876674 2877130 + 15.03241 NA promoter-TSS (NR_033851) promoter-TSS (NR_033851) -158 NR_033851 221756 Hs.8162 NM_182544 SERPINB9P1 SERPINB9P serpin peptidase inhibitor, clade B (ovalbumin), member 9, pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_7362 chr10 51827935 51828141 + 15.03241 NA promoter-TSS (NR_038275) promoter-TSS (NR_038275) 390 NM_001005751 387680 Hs.365286 NM_018232 HPRD:17364 FAM21A FAM21B|bA56A21.1|bA98I6.1 family with sequence similarity 21, member A protein-coding 13-PTNLD9-TUMOR_peak_21651 chr17 57500530 57501008 + 15.03241 NA Intergenic Intergenic 57325 NR_039882 100616204 NR_039882 MIR4729 - microRNA 4729 ncRNA 13-PTNLD9-TUMOR_peak_36285 chr3 146221373 146221812 + 15.03055 NA Intergenic Intergenic -7814 NM_001199979 57047 Hs.744414 NM_020359 HPRD:09621 PLSCR2 - phospholipid scramblase 2 protein-coding 13-PTNLD9-TUMOR_peak_21424 chr17 48105021 48105432 + 15.03055 NA Intergenic L2a|LINE|L2 27877 NR_038230 284080 Hs.274864 NR_038230 ENSG00000246640 LOC284080 - uncharacterized LOC284080 ncRNA 13-PTNLD9-TUMOR_peak_3094 chr1 120611127 120611270 + 15.02778 NA intron (NM_024408, intron 1 of 33) intron (NM_024408, intron 1 of 33) 1119 NM_001200001 4853 Hs.487360 NM_024408 HPRD:02606 NOTCH2 AGS2|HJCYS|hN2 notch 2 protein-coding 13-PTNLD9-TUMOR_peak_19772 chr16 75301866 75302031 + 15.02689 NA promoter-TSS (NM_001170715) promoter-TSS (NM_001170715) 3 NM_001170715 9564 Hs.479747 NM_014567 HPRD:04248 BCAR1 CAS|CAS1|CASS1|CRKAS|P130Cas breast cancer anti-estrogen resistance 1 protein-coding 13-PTNLD9-TUMOR_peak_36488 chr3 156333443 156333922 + 15.02689 NA Intergenic Intergenic -58523 NM_015508 25976 Hs.744050 NM_015508 HPRD:18192 TIPARP ARTD14|PARP7|pART14 TCDD-inducible poly(ADP-ribose) polymerase protein-coding 13-PTNLD9-TUMOR_peak_31976 chr21 18826681 18827266 + 15.02689 NA Intergenic Intergenic 15765 NR_037585 100505929 Hs.46707 NM_001005521 ENSG00000232560 C21orf37 - chromosome 21 open reading frame 37 ncRNA 13-PTNLD9-TUMOR_peak_37303 chr3 193989064 193989359 + 15.02689 NA Intergenic Intergenic -21269 NR_125403 100505920 Hs.436654 NR_125403 LOC100505920 - uncharacterized LOC100505920 ncRNA 13-PTNLD9-TUMOR_peak_24165 chr19 14172866 14173141 + 15.02689 NA Intergenic Intergenic -3032 NM_001145028 342979 Hs.444298 NM_001145028 ENSG00000187867 PALM3 - paralemmin 3 protein-coding 13-PTNLD9-TUMOR_peak_54753 chr9 127018863 127019084 + 15.02689 NA promoter-TSS (NM_001166167) promoter-TSS (NM_001166167) -912 NM_001166167 10783 Hs.197071 NM_014397 HPRD:05348 NEK6 SID6-1512 NIMA-related kinase 6 protein-coding 13-PTNLD9-TUMOR_peak_33893 chr3 14473885 14474020 + 15.01925 NA intron (NM_001134367, intron 10 of 22) intron (NM_001134367, intron 10 of 22) 29876 NM_001134368 6533 Hs.529488 NM_003043 HPRD:01734 SLC6A6 TAUT solute carrier family 6 (neurotransmitter transporter), member 6 protein-coding 13-PTNLD9-TUMOR_peak_12194 chr12 13251224 13251448 + 15.01925 NA intron (NM_001206842, intron 1 of 5) intron (NM_001206842, intron 1 of 5) -2596 NM_001206845 83445 Hs.240053 NM_031289 HPRD:11015 GSG1 - germ cell associated 1 protein-coding 13-PTNLD9-TUMOR_peak_49526 chr7 144081270 144081483 + 15.01769 NA Intergenic Intergenic 25944 NM_001080413 135935 Hs.558628 NM_001080413 ENSG00000106410 NOBOX OG-2|OG2|OG2X|POF5|TCAG_12042 NOBOX oogenesis homeobox protein-coding 13-PTNLD9-TUMOR_peak_2487 chr1 93645180 93645599 + 15.00779 NA promoter-TSS (NM_206886) promoter-TSS (NM_206886) 857 NM_001167830 50999 Hs.482873 NM_016040 HPRD:13028 TMED5 CGI-100|p28 transmembrane emp24 protein transport domain containing 5 protein-coding 13-PTNLD9-TUMOR_peak_35329 chr3 111458238 111458502 + 15.00779 NA intron (NM_001134437, intron 1 of 17) intron (NM_001134437, intron 1 of 17) 7043 NM_001134437 90102 Hs.603252 NM_145753 HPRD:06611 PHLDB2 LL5b|LL5beta pleckstrin homology-like domain, family B, member 2 protein-coding 13-PTNLD9-TUMOR_peak_11112 chr11 106889718 106889991 + 15.00667 NA promoter-TSS (NM_000855) promoter-TSS (NM_000855) -683 NM_001256424 2977 Hs.24321 NM_000855 HPRD:03146 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1, soluble, alpha 2 protein-coding 13-PTNLD9-TUMOR_peak_18513 chr16 11295557 11296048 + 15.00667 NA Intergenic Intergenic 54237 NM_003745 8651 Hs.50640 NM_003745 HPRD:04669 SOCS1 CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP3 suppressor of cytokine signaling 1 protein-coding 13-PTNLD9-TUMOR_peak_35482 chr3 118895365 118895543 + 15.00667 NA intron (NM_006952, intron 1 of 7) intron (NM_006952, intron 1 of 7) 3029 NM_006952 7348 Hs.271580 NM_006952 HPRD:03853 UPK1B TSPAN20|UPIB|UPK1 uroplakin 1B protein-coding 13-PTNLD9-TUMOR_peak_24246 chr19 15939538 15939847 + 15.00667 NA promoter-TSS (NR_015379) promoter-TSS (NR_015379) -65 NR_015379 652995 Hs.644234 NR_015379 ENSG00000214049 UCA1 CUDR|LINC00178|NCRNA00178|UCAT1 urothelial cancer associated 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_43045 chr5 172297460 172297611 + 15.00667 NA intron (NM_001031711, intron 1 of 9) intron (NM_001031711, intron 1 of 9) 36312 NM_001031711 57222 Hs.509163 NM_020462 HPRD:13836 ERGIC1 ERGIC-32|ERGIC32|NET24 endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1 protein-coding 13-PTNLD9-TUMOR_peak_4888 chr1 199241788 199242137 + 15.00667 NA Intergenic Intergenic -253869 NR_110525 102800316 Hs.568480 NR_110525 LINC01222 TCONS_00000112 long intergenic non-protein coding RNA 1222 ncRNA 13-PTNLD9-TUMOR_peak_19043 chr16 30996839 30997122 + 15.00634 NA TTS (NM_014712) TTS (NM_014712) 461 NM_001142778 80270 Hs.460618 NM_025193 HPRD:09680 HSD3B7 CBAS1|PFIC4|SDR11E3 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7 protein-coding 13-PTNLD9-TUMOR_peak_50318 chr8 22831386 22831976 + 15.00634 NA Intergenic Intergenic -13249 NM_001160036 23221 Hs.372688 NM_015178 HPRD:06300 RHOBTB2 DBC2 Rho-related BTB domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_34970 chr3 72710208 72710511 + 14.99035 NA Intergenic Intergenic 187239 NM_018130 55164 Hs.606584 NM_018130 HPRD:07682 SHQ1 Shq1p SHQ1, H/ACA ribonucleoprotein assembly factor protein-coding 13-PTNLD9-TUMOR_peak_12857 chr12 53253955 53254215 + 14.99035 NA Intergenic Intergenic -11307 NM_173352 196374 Hs.665267 NM_173352 HPRD:17171 KRT78 CK-78|K5B|K78|Kb40 keratin 78 protein-coding 13-PTNLD9-TUMOR_peak_32567 chr21 46648206 46648518 + 14.99035 NA Intergenic MER63C|DNA|hAT-Blackjack 59449 NM_133635 23275 Hs.592164 NM_015227 HPRD:09846 POFUT2 C21orf80|FUT13 protein O-fucosyltransferase 2 protein-coding 13-PTNLD9-TUMOR_peak_51996 chr8 128845431 128845650 + 14.99035 NA Intergenic Intergenic 37332 NR_031609 100302185 NR_031609 miRBase:MI0006337 MIR1204 hsa-mir-1204 microRNA 1204 ncRNA 13-PTNLD9-TUMOR_peak_32319 chr21 40138989 40139292 + 14.98795 NA intron (NR_027065, intron 1 of 6) intron (NR_027065, intron 1 of 6) 1758 NR_027066 400866 Hs.278704 NM_001001789 HPRD:10744 LINC00114 C21orf24|NCRNA00114 long intergenic non-protein coding RNA 114 ncRNA 13-PTNLD9-TUMOR_peak_34230 chr3 34989422 34989644 + 14.98795 NA intron (NR_110817, intron 2 of 3) intron (NR_110817, intron 2 of 3) 445982 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 13-PTNLD9-TUMOR_peak_51154 chr8 74276570 74276943 + 14.98795 NA Intergenic Intergenic -8060 NR_125388 101926926 Hs.640090 NR_125388 LOC101926926 - uncharacterized LOC101926926 ncRNA 13-PTNLD9-TUMOR_peak_42153 chr5 134544604 134544784 + 14.98795 NA intron (NM_001277348, intron 3 of 5) intron (NM_001277348, intron 3 of 5) 39173 NR_037895 340073 Hs.434422 NR_037895 ENSG00000249647 C5orf66-AS2 - C5orf66 antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_7614 chr10 71599546 71599683 + 14.98795 NA intron (NM_080798, intron 3 of 34) L2a|LINE|L2 37970 NM_080805 1305 Hs.695934 NM_005203 HPRD:00383 COL13A1 COLXIIIA1 collagen, type XIII, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_21089 chr17 40580346 40580529 + 14.98795 NA Intergenic Intergenic -5099 NM_012232 284119 Hs.437191 NM_012232 HPRD:04433 PTRF CAVIN|CAVIN1|CGL4|cavin-1 polymerase I and transcript release factor protein-coding 13-PTNLD9-TUMOR_peak_24614 chr19 29497316 29497600 + 14.98795 NA intron (NR_040036, intron 3 of 4) intron (NR_040036, intron 3 of 4) 3996 NR_040036 100505835 Hs.176539 NR_040036 ENSG00000267014 LOC100505835 - uncharacterized LOC100505835 ncRNA 13-PTNLD9-TUMOR_peak_37995 chr4 10927813 10927967 + 14.98795 NA Intergenic Intergenic -241504 NM_052964 116449 Hs.678910 NM_052964 CLNK MIST cytokine-dependent hematopoietic cell linker protein-coding 13-PTNLD9-TUMOR_peak_7747 chr10 75337633 75337918 + 14.98795 NA Intergenic Intergenic -2342 NM_152586 159195 Hs.657355 NM_152586 HPRD:15641 USP54 C10orf29|bA137L10.3|bA137L10.4 ubiquitin specific peptidase 54 protein-coding 13-PTNLD9-TUMOR_peak_23254 chr18 54877638 54877850 + 14.98795 NA Intergenic Intergenic 63451 NM_001257964 284257 Hs.127882 NM_001257964 ENSG00000228075 BOD1L2 BOD1P|FAM44C biorientation of chromosomes in cell division 1-like 2 protein-coding 13-PTNLD9-TUMOR_peak_12128 chr12 11093055 11093305 + 14.98795 NA intron (NR_037918, intron 4 of 9) intron (NR_037918, intron 4 of 9) -1374 NM_023922 50840 Hs.679406 NM_023922 TAS2R14 T2R14|TRB1 taste receptor, type 2, member 14 protein-coding 13-PTNLD9-TUMOR_peak_9386 chr11 28723716 28723892 + 14.98795 NA Intergenic Intergenic -224709 NR_107035 102466876 NR_107035 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 13-PTNLD9-TUMOR_peak_45895 chr6 111265911 111266291 + 14.98795 NA Intergenic Intergenic -13662 NM_138408 112495 Hs.418520 NM_138408 HPRD:12886 GTF3C6 C6orf51|TFIIIC35|bA397G5.3 general transcription factor IIIC, polypeptide 6, alpha 35kDa protein-coding 13-PTNLD9-TUMOR_peak_37137 chr3 188004020 188004177 + 14.98795 NA intron (NM_005578, intron 2 of 10) intron (NM_005578, intron 2 of 10) 60905 NM_001167671 4026 Hs.720220 NM_005578 HPRD:02828 LPP - LIM domain containing preferred translocation partner in lipoma protein-coding 13-PTNLD9-TUMOR_peak_22796 chr18 21578808 21579092 + 14.98795 NA intron (NR_110796, intron 5 of 5) intron (NR_110796, intron 5 of 5) 6213 NM_153211 125488 Hs.128576 NM_153211 HPRD:08745 TTC39C C18orf17|HsT2697 tetratricopeptide repeat domain 39C protein-coding 13-PTNLD9-TUMOR_peak_33524 chr22 51014562 51014770 + 14.98795 NA exon (NM_152246, exon 6 of 20) exon (NM_152246, exon 6 of 20) 1840 NM_001145137 1375 Hs.439777 NM_004377 HPRD:09065 CPT1B CPT1-M|CPT1M|CPTI|CPTI-M|M-CPT1|MCCPT1|MCPT1 carnitine palmitoyltransferase 1B (muscle) protein-coding 13-PTNLD9-TUMOR_peak_41818 chr5 116083623 116083952 + 14.98795 NA intron (NR_104678, intron 3 of 3) intron (NR_104678, intron 3 of 3) 14118 NR_104678 102467223 Hs.570916 NR_104678 LOC102467223 - uncharacterized LOC102467223 ncRNA 13-PTNLD9-TUMOR_peak_15487 chr14 32979068 32979485 + 14.98286 NA intron (NM_004274, intron 2 of 13) intron (NM_004274, intron 2 of 13) 180797 NM_004274 9472 Hs.509083 NM_004274 HPRD:05257 AKAP6 ADAP100|ADAP6|AKAP100|PRKA6|mAKAP A kinase (PRKA) anchor protein 6 protein-coding 13-PTNLD9-TUMOR_peak_33997 chr3 17681298 17681589 + 14.98286 NA intron (NM_014744, intron 1 of 21) MER117|DNA|hAT-Charlie 60069 NM_001134381 9779 Hs.475629 NM_014744 HPRD:10262 TBC1D5 - TBC1 domain family, member 5 protein-coding 13-PTNLD9-TUMOR_peak_43412 chr6 1287416 1287843 + 14.98286 NA Intergenic Intergenic -25046 NM_033260 94234 Hs.591352 NM_033260 HPRD:17015 FOXQ1 HFH1 forkhead box Q1 protein-coding 13-PTNLD9-TUMOR_peak_28604 chr2 139274009 139274208 + 14.98286 NA intron (NM_001001664, intron 1 of 10) intron (NM_001001664, intron 1 of 10) 14758 NM_001001664 339745 Hs.333297 NM_001001664 HPRD:11261 SPOPL BTBD33 speckle-type POZ protein-like protein-coding 13-PTNLD9-TUMOR_peak_42831 chr5 159244706 159244887 + 14.98286 NA intron (NR_109891, intron 2 of 2) MIRb|SINE|MIR 53595 NR_109891 101927766 Hs.638568 NR_109891 ENSG00000253311 LOC101927766 - uncharacterized LOC101927766 ncRNA 13-PTNLD9-TUMOR_peak_49648 chr7 150821111 150821259 + 14.98285 NA TTS (NM_001042535) TTS (NM_001042535) 37386 NM_001042535 116988 Hs.647075 NM_031946 HPRD:16707 AGAP3 AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3 ArfGAP with GTPase domain, ankyrin repeat and PH domain 3 protein-coding 13-PTNLD9-TUMOR_peak_9901 chr11 57545987 57546226 + 14.98285 NA intron (NM_001085467, intron 1 of 16) intron (NM_001085467, intron 1 of 16) 16872 NM_001085467 1500 Hs.166011 NM_001331 HPRD:03026 CTNND1 CAS|CTNND|P120CAS|P120CTN|p120|p120(CAS)|p120(CTN) catenin (cadherin-associated protein), delta 1 protein-coding 13-PTNLD9-TUMOR_peak_49241 chr7 135562646 135563012 + 14.98199 NA Intergenic Intergenic 99375 NM_145808 136319 Hs.602015 NM_145808 HPRD:07574 MTPN GCDP|V-1 myotrophin protein-coding 13-PTNLD9-TUMOR_peak_23732 chr19 4813090 4813309 + 14.98199 NA Intergenic Intergenic 18555 NM_182919 148022 Hs.29344 NM_014261 HPRD:06350 TICAM1 IIAE6|MyD88-3|PRVTIRB|TICAM-1|TRIF toll-like receptor adaptor molecule 1 protein-coding 13-PTNLD9-TUMOR_peak_42699 chr5 151078668 151079010 + 14.96520 NA Intergenic Intergenic -12224 NM_003118 6678 Hs.111779 NM_003118 HPRD:01631 SPARC ON secreted protein, acidic, cysteine-rich (osteonectin) protein-coding 13-PTNLD9-TUMOR_peak_51668 chr8 117631056 117631340 + 14.96520 NA Intergenic LTR33|LTR|ERVL 136864 NM_003756 8667 Hs.492599 NM_003756 EIF3H EIF3S3|eIF3-gamma|eIF3-p40 eukaryotic translation initiation factor 3, subunit H protein-coding 13-PTNLD9-TUMOR_peak_11759 chr12 329152 329303 + 14.95767 NA TTS (NM_016615) TTS (NM_016615) -5856 NM_001122848 6539 Hs.437174 NM_003044 HPRD:04358 SLC6A12 BGT-1|BGT1|GAT2 solute carrier family 6 (neurotransmitter transporter), member 12 protein-coding 13-PTNLD9-TUMOR_peak_50889 chr8 49230960 49231305 + 14.95767 NA Intergenic Intergenic -232995 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 13-PTNLD9-TUMOR_peak_11666 chr11 130450324 130450614 + 14.95767 NA Intergenic Intergenic -86161 NR_107019 102466873 NR_107019 MIR8052 hsa-mir-8052 microRNA 8052 ncRNA 13-PTNLD9-TUMOR_peak_40920 chr5 55823076 55823372 + 14.95767 NA intron (NM_001287053, intron 4 of 5) intron (NM_001287053, intron 4 of 5) -45628 NR_104664 102467147 Hs.650177 NR_104664 LOC102467147 - uncharacterized LOC102467147 ncRNA 13-PTNLD9-TUMOR_peak_52734 chr9 8864276 8864440 + 14.95767 NA intron (NM_002839, intron 11 of 45) intron (NM_002839, intron 11 of 45) 6340 NR_121599 101929407 Hs.649971 NR_121599 PTPRD-AS1 - PTPRD antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_23900 chr19 9785518 9786048 + 14.95767 NA promoter-TSS (NM_001130032) promoter-TSS (NM_001130032) -7 NM_001130032 54811 Hs.371107 NM_017656 HPRD:15844 ZNF562 - zinc finger protein 562 protein-coding 13-PTNLD9-TUMOR_peak_31562 chr20 52239967 52240130 + 14.95423 NA Intergenic Intergenic -40412 NM_006526 7764 Hs.155040 NM_006526 HPRD:04272 ZNF217 ZABC1 zinc finger protein 217 protein-coding 13-PTNLD9-TUMOR_peak_22378 chr17 81067157 81067321 + 14.95423 NA Intergenic Intergenic 29672 NM_001004431 284207 Hs.378821 NM_001004431 HPRD:11255 METRNL - meteorin, glial cell differentiation regulator-like protein-coding 13-PTNLD9-TUMOR_peak_21052 chr17 39810388 39810665 + 14.94596 NA Intergenic Intergenic -14075 NR_033415 284116 Hs.725790 NR_033415 ENSG00000214514 KRT42P - keratin 42 pseudogene pseudo 13-PTNLD9-TUMOR_peak_13303 chr12 70446803 70447019 + 14.93749 NA Intergenic LTR16A|LTR|ERVL -189863 NM_014515 4848 Hs.133350 NM_014515 HPRD:05367 CNOT2 CDC36|NOT2|NOT2H CCR4-NOT transcription complex, subunit 2 protein-coding 13-PTNLD9-TUMOR_peak_30817 chr20 32497400 32497676 + 14.93749 NA Intergenic MER65D|LTR|ERV1 -83920 NM_016732 22913 Hs.136947 NM_007367 HPRD:11480 RALY HNRPCL2|P542 RALY heterogeneous nuclear ribonucleoprotein protein-coding 13-PTNLD9-TUMOR_peak_29792 chr2 217404768 217405056 + 14.93749 NA Intergenic Intergenic 41392 NM_000998 6168 Hs.433701 NM_000998 RPL37A L37A ribosomal protein L37a protein-coding 13-PTNLD9-TUMOR_peak_4955 chr1 201417314 201417471 + 14.93749 NA Intergenic Intergenic 20907 NR_073080 23612 Hs.268557 NM_012396 HPRD:09519 PHLDA3 TIH1 pleckstrin homology-like domain, family A, member 3 protein-coding 13-PTNLD9-TUMOR_peak_43139 chr5 175288445 175288686 + 14.93749 NA intron (NM_006650, intron 2 of 4) intron (NM_006650, intron 2 of 4) -9936 NM_001008220 10814 Hs.193235 NM_006650 HPRD:09234 CPLX2 921-L|CPX-2|CPX2|Hfb1 complexin 2 protein-coding 13-PTNLD9-TUMOR_peak_51454 chr8 102647987 102648263 + 14.93749 NA intron (NM_024915, intron 11 of 15) intron (NM_024915, intron 11 of 15) 143457 NM_024915 79977 Hs.661088 NM_024915 HPRD:10545 GRHL2 BOM|DFNA28|TFCP2L3 grainyhead-like 2 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_49284 chr7 137583967 137584088 + 14.93675 NA intron (NM_194071, intron 8 of 11) intron (NM_194071, intron 8 of 11) -52418 NM_004717 9162 Hs.242947 NM_004717 HPRD:07238 DGKI DGK-IOTA diacylglycerol kinase, iota protein-coding 13-PTNLD9-TUMOR_peak_24138 chr19 13898480 13898992 + 14.93675 NA Intergenic Intergenic -7538 NM_023072 65249 Hs.466015 NM_023072 HPRD:15904 ZSWIM4 - zinc finger, SWIM-type containing 4 protein-coding 13-PTNLD9-TUMOR_peak_49248 chr7 135819371 135819530 + 14.93675 NA Intergenic LTR88b|LTR|Gypsy? -157246 NM_001128619 767558 Hs.602015 NM_001128619 LUZP6 MPD6|MTPNUT leucine zipper protein 6 protein-coding 13-PTNLD9-TUMOR_peak_8664 chr10 134346350 134346544 + 14.93675 NA Intergenic Intergenic -4906 NM_005539 3632 Hs.523360 NM_005539 HPRD:02521 INPP5A 5PTASE inositol polyphosphate-5-phosphatase, 40kDa protein-coding 13-PTNLD9-TUMOR_peak_15778 chr14 53257973 53258391 + 14.93675 NA 5' UTR (NM_198066, exon 1 of 6) 5' UTR (NM_198066, exon 1 of 6) 204 NM_198066 64841 Hs.478025 NM_198066 HPRD:17046 GNPNAT1 GNPNAT|Gpnat1 glucosamine-phosphate N-acetyltransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_46063 chr6 132272486 132272743 + 14.93675 NA promoter-TSS (NM_001901) promoter-TSS (NM_001901) -96 NM_001901 1490 Hs.410037 NM_001901 HPRD:00412 CTGF CCN2|HCS24|IGFBP8|NOV2 connective tissue growth factor protein-coding 13-PTNLD9-TUMOR_peak_45557 chr6 79786662 79786891 + 14.93675 NA intron (NM_017934, intron 4 of 39) (CGAG)n|Simple_repeat|Simple_repeat 1235 NM_017934 55023 Hs.511817 NM_017934 HPRD:10152 PHIP BRWD2|DCAF14|WDR11|ndrp pleckstrin homology domain interacting protein protein-coding 13-PTNLD9-TUMOR_peak_33238 chr22 38148455 38149041 + 14.93675 NA intron (NM_001039141, intron 12 of 23) intron (NM_001039141, intron 12 of 23) 6507 NM_007032 11078 Hs.533030 NM_007032 HPRD:11028 TRIOBP DFNB28|TAP68|TARA|dJ37E16.4 TRIO and F-actin binding protein protein-coding 13-PTNLD9-TUMOR_peak_51703 chr8 119125271 119125490 + 14.93307 NA Intergenic Intergenic -1322 NM_000127 2131 Hs.492618 NM_000127 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_2814 chr1 110778479 110778776 + 14.92493 NA Intergenic MIRb|SINE|MIR 25291 NM_004978 3749 Hs.153521 NM_004978 HPRD:08887 KCNC4 C1orf30|HKSHIIIC|KSHIIIC|KV3.4 potassium voltage-gated channel, Shaw-related subfamily, member 4 protein-coding 13-PTNLD9-TUMOR_peak_52974 chr9 28927789 28927999 + 14.92493 NA intron (NM_001258282, intron 2 of 6) MIR|SINE|MIR -38941 NR_030618 100126316 NR_030618 miRBase:MI0005564 MIR873 MIRN873|hsa-mir-873 microRNA 873 ncRNA 13-PTNLD9-TUMOR_peak_13102 chr12 61676679 61676896 + 14.92493 NA Intergenic MIR|SINE|MIR 909833 NM_178539 338811 Hs.269745 NM_178539 HPRD:16876 FAM19A2 TAFA-2|TAFA2 family with sequence similarity 19 (chemokine (C-C motif)-like), member A2 protein-coding 13-PTNLD9-TUMOR_peak_44972 chr6 41438267 41438448 + 14.92493 NA Intergenic CpG -31825 NR_120347 103106903 Hs.563396 NR_120347 LINC01276 - long intergenic non-protein coding RNA 1276 ncRNA 13-PTNLD9-TUMOR_peak_29247 chr2 181087459 181087637 + 14.92493 NA Intergenic LTR33C|LTR|ERVL -215768 NM_020943 57703 Hs.311363 NM_020943 HPRD:17220 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome-associated protein protein-coding 13-PTNLD9-TUMOR_peak_19691 chr16 70462024 70462289 + 14.92493 NA intron (NM_006927, intron 1 of 6) intron (NM_006927, intron 1 of 6) 10835 NM_006927 6483 Hs.368611 NM_006927 HPRD:06220 ST3GAL2 Gal-NAc6S|SIAT4B|ST3GALII|ST3GalA.2 ST3 beta-galactoside alpha-2,3-sialyltransferase 2 protein-coding 13-PTNLD9-TUMOR_peak_16093 chr14 68658500 68658771 + 14.92493 NA intron (NM_133510, intron 7 of 10) intron (NM_133510, intron 7 of 10) 372139 NM_133510 5890 Hs.172587 NM_002877 HPRD:04255 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 13-PTNLD9-TUMOR_peak_51365 chr8 98930575 98930854 + 14.92493 NA intron (NM_002380, intron 2 of 18) intron (NM_002380, intron 2 of 18) 49403 NM_002380 4147 Hs.189445 NM_002380 HPRD:03660 MATN2 - matrilin 2 protein-coding 13-PTNLD9-TUMOR_peak_51313 chr8 95071643 95071945 + 14.92493 NA Intergenic MER4D|LTR|ERV1 142515 NM_001161781 54704 Hs.22265 NM_018444 HPRD:16185 PDP1 PDH|PDP|PDPC|PPM2C pyruvate dehyrogenase phosphatase catalytic subunit 1 protein-coding 13-PTNLD9-TUMOR_peak_35607 chr3 123553599 123553828 + 14.92493 NA intron (NM_053025, intron 2 of 33) intron (NM_053025, intron 2 of 33) 49436 NM_053026 4638 Hs.477375 NM_005965 HPRD:02952 MYLK AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK myosin light chain kinase protein-coding 13-PTNLD9-TUMOR_peak_45541 chr6 77668710 77668840 + 14.92436 NA Intergenic L1PA3|LINE|L1 504345 NM_000863 3351 Hs.123016 NM_000863 HTR1B 5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 5-hydroxytryptamine (serotonin) receptor 1B, G protein-coupled protein-coding 13-PTNLD9-TUMOR_peak_25908 chr2 124293 124512 + 14.92436 NA Intergenic Intergenic -77814 NM_001077710 642273 Hs.8379 NM_001077710 FAM110C - family with sequence similarity 110, member C protein-coding 13-PTNLD9-TUMOR_peak_27103 chr2 65609977 65610438 + 14.92436 NA intron (NM_181784, intron 1 of 5) intron (NM_181784, intron 1 of 5) -16276 NM_001128210 200734 Hs.59332 NM_181784 HPRD:18100 SPRED2 Spred-2 sprouty-related, EVH1 domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_10889 chr11 90953778 90953930 + 14.92436 NA Intergenic MLT1F2|LTR|ERVL-MaLR -664829 NR_039711 100616186 NR_039711 miRBase:MI0016852 MIR4490 - microRNA 4490 ncRNA 13-PTNLD9-TUMOR_peak_52719 chr9 7123855 7124003 + 14.92436 NA intron (NM_015061, intron 18 of 21) intron (NM_015061, intron 18 of 21) 366288 NM_015061 23081 Hs.709425 NM_015061 HPRD:12016 KDM4C GASC1|JHDM3C|JMJD2C|TDRD14C|bA146B14.1 lysine (K)-specific demethylase 4C protein-coding 13-PTNLD9-TUMOR_peak_17305 chr15 52684577 52684782 + 14.92436 NA intron (NM_001142495, intron 11 of 39) intron (NM_001142495, intron 11 of 39) -96684 NM_018728 55930 Hs.487036 NM_018728 HPRD:11380 MYO5C - myosin VC protein-coding 13-PTNLD9-TUMOR_peak_34948 chr3 72031875 72032048 + 14.92436 NA Intergenic HERVL-int|LTR|ERVL 117645 NR_104116 285286 Hs.559386 NR_104116 LINC00877 - long intergenic non-protein coding RNA 877 ncRNA 13-PTNLD9-TUMOR_peak_18830 chr16 25005664 25005858 + 14.92436 NA intron (NM_001006634, intron 1 of 19) intron (NM_001006634, intron 1 of 19) 20938 NM_018054 55114 Hs.373793 NM_018054 HPRD:12207 ARHGAP17 MST066|MST110|MSTP038|MSTP066|MSTP110|NADRIN|PP367|PP4534|RICH-1|RICH1|WBP15 Rho GTPase activating protein 17 protein-coding 13-PTNLD9-TUMOR_peak_43270 chr5 178214216 178214387 + 14.92436 NA Intergenic Intergenic -11024 NR_024035 729522 Hs.382790 NR_024035 AACSP1 AACSL acetoacetyl-CoA synthetase pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_39629 chr4 152236486 152236781 + 14.92436 NA Intergenic Intergenic 38308 NM_183375 345062 Hs.651266 NM_183375 HPRD:07110 PRSS48 ESSPL protease, serine, 48 protein-coding 13-PTNLD9-TUMOR_peak_40353 chr5 13606320 13606493 + 14.92436 NA Intergenic Intergenic 338183 NM_001369 1767 Hs.212360 NM_001369 HPRD:04514 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein, axonemal, heavy chain 5 protein-coding 13-PTNLD9-TUMOR_peak_20196 chr17 205803 206191 + 14.92436 NA Intergenic CpG -3364 NM_006987 9501 Hs.651925 NM_006987 HPRD:05345 RPH3AL NOC2 rabphilin 3A-like (without C2 domains) protein-coding 13-PTNLD9-TUMOR_peak_675 chr1 23888889 23889033 + 14.92411 NA Intergenic Intergenic -2676 NM_002167 3399 Hs.76884 NM_002167 HPRD:02608 ID3 HEIR-1|bHLHb25 inhibitor of DNA binding 3, dominant negative helix-loop-helix protein protein-coding 13-PTNLD9-TUMOR_peak_51895 chr8 126290529 126290836 + 14.91007 NA intron (NM_173685, intron 5 of 7) intron (NM_173685, intron 5 of 7) -151881 NM_025195 10221 Hs.444947 NM_025195 HPRD:09863 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 13-PTNLD9-TUMOR_peak_29750 chr2 213777565 213777741 + 14.90978 NA Intergenic Intergenic -13328 NR_039935 100616267 NR_039935 miRBase:MI0017419 MIR4776-1 - microRNA 4776-1 ncRNA 13-PTNLD9-TUMOR_peak_6636 chr10 21604816 21605120 + 14.90978 NA Intergenic Intergenic 141737 NR_046284 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_31279 chr20 46018767 46019132 + 14.90978 NA Intergenic MLT1J|LTR|ERVL-MaLR -33316 NM_183048 23613 Hs.446240 NM_012408 HPRD:10166 ZMYND8 PRKCBP1|PRO2893|RACK7 zinc finger, MYND-type containing 8 protein-coding 13-PTNLD9-TUMOR_peak_34404 chr3 45165424 45165657 + 14.90587 NA intron (NM_022842, intron 1 of 8) intron (NM_022842, intron 1 of 8) 22374 NM_022842 64866 Hs.476093 NM_022842 HPRD:16696 CDCP1 CD318|SIMA135|TRASK CUB domain containing protein 1 protein-coding 13-PTNLD9-TUMOR_peak_34028 chr3 20098779 20099018 + 14.90116 NA intron (NM_003884, intron 1 of 17) L2a|LINE|L2 17374 NM_003884 8850 Hs.533055 NM_003884 HPRD:06780 KAT2B CAF|P/CAF|PCAF K(lysine) acetyltransferase 2B protein-coding 13-PTNLD9-TUMOR_peak_3502 chr1 149658540 149658686 + 14.89523 NA intron (NR_111957, intron 2 of 3) MER66C|LTR|ERV1 52696 NR_125392 101954268 NR_125392 RNVU1-20 RNU1-110|vU1.20 RNA, variant U1 small nuclear 20 snRNA 13-PTNLD9-TUMOR_peak_7655 chr10 72564270 72564530 + 14.89219 NA Intergenic Intergenic -11304 NM_003901 8879 Hs.499984 NM_003901 HPRD:07224 SGPL1 S1PL|SPL sphingosine-1-phosphate lyase 1 protein-coding 13-PTNLD9-TUMOR_peak_35888 chr3 129842284 129842521 + 14.89219 NA Intergenic LTR5A|LTR|ERVK -12126 NR_024252 729375 Hs.123633 NR_024252 FAM86HP - family with sequence similarity 86, member A pseudogene pseudo 13-PTNLD9-TUMOR_peak_18981 chr16 30211034 30211175 + 14.89179 NA intron (NM_001017390, intron 1 of 7).2 AluJr|SINE|Alu 555 NM_177552 6818 Hs.460558 NM_003166 HPRD:07199 SULT1A3 HAST|HAST3|M-PST|ST1A3/ST1A4|ST1A5|STM|TL-PST sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3 protein-coding 13-PTNLD9-TUMOR_peak_48734 chr7 105649970 105650304 + 14.88530 NA intron (NM_001301161, intron 7 of 17) CpG 46480 NM_001301161 222256 Hs.150120 NM_152750 HPRD:08042 CDHR3 CDH28 cadherin-related family member 3 protein-coding 13-PTNLD9-TUMOR_peak_31083 chr20 39958140 39958420 + 14.88530 NA Intergenic Intergenic -11280 NM_022896 64900 Hs.25897 NM_022896 ENSG00000132793 LPIN3 LIPN3L|SMP2|dJ450M14.2|dJ450M14.3|dJ620E11.2 lipin 3 protein-coding 13-PTNLD9-TUMOR_peak_54640 chr9 123555464 123555855 + 14.88530 NA promoter-TSS (NM_012164) promoter-TSS (NM_012164) 81 NM_012164 26190 Hs.494985 NM_012164 HPRD:09950 FBXW2 FBW2|Fwd2|Md6 F-box and WD repeat domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_56107 chrX 70940110 70940373 + 14.88530 NA intron (NR_001568, intron 1 of 3) intron (NR_001568, intron 1 of 3) -2106 NM_001145139 100132994 Hs.719592 NM_001145139 CXorf49B - chromosome X open reading frame 49B protein-coding 13-PTNLD9-TUMOR_peak_2592 chr1 96939504 96939656 + 14.88530 NA Intergenic Intergenic -99899 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LOC101928241 - uncharacterized LOC101928241 ncRNA 13-PTNLD9-TUMOR_peak_47423 chr7 47008894 47009311 + 14.88530 NA Intergenic L2c|LINE|L2 612640 NM_022748 64759 Hs.520814 NM_022748 ENSG00000136205 TNS3 TEM6|TENS1 tensin 3 protein-coding 13-PTNLD9-TUMOR_peak_31119 chr20 42765844 42766262 + 14.88530 NA intron (NM_020433, intron 2 of 5) intron (NM_020433, intron 2 of 5) 50165 NM_175913 57158 Hs.441737 NM_020433 HPRD:12006 JPH2 CMH17|JP-2|JP2 junctophilin 2 protein-coding 13-PTNLD9-TUMOR_peak_39410 chr4 139832088 139832489 + 14.88530 NA Intergenic Intergenic -104625 NM_012118 25819 Hs.639842 NM_012118 HPRD:16337 CCRN4L CCR4L|Ccr4c|NOC CCR4 carbon catabolite repression 4-like (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_44401 chr6 29596551 29596692 + 14.88239 NA promoter-TSS (NM_021903).4 promoter-TSS (NM_021903).4 -616 NM_021903 2550 Hs.167017 NM_001470 HPRD:04644 GABBR1 GABABR1|GABBR1-3|GB1|GPRC3A|dJ271M21.1.1|dJ271M21.1.2 gamma-aminobutyric acid (GABA) B receptor, 1 protein-coding 13-PTNLD9-TUMOR_peak_20992 chr17 38135340 38135625 + 14.87689 NA Intergenic Intergenic -1539 NM_002809 5709 Hs.12970 NM_002809 HPRD:10170 PSMD3 P58|RPN3|S3|TSTA2 proteasome (prosome, macropain) 26S subunit, non-ATPase, 3 protein-coding 13-PTNLD9-TUMOR_peak_49328 chr7 138818412 138818671 + 14.87689 NA promoter-TSS (NM_001144923) promoter-TSS (NM_001144923) 51 NM_001144923 79989 Hs.133020 NM_024926 HPRD:07776 TTC26 DYF13|dyf-13 tetratricopeptide repeat domain 26 protein-coding 13-PTNLD9-TUMOR_peak_23980 chr19 11196142 11196445 + 14.87387 NA Intergenic Intergenic -3745 NM_001195799 3949 Hs.213289 NM_000527 HPRD:06091 LDLR FH|FHC|LDLCQ2 low density lipoprotein receptor protein-coding 13-PTNLD9-TUMOR_peak_29630 chr2 206515170 206515390 + 14.86784 NA Intergenic Intergenic -31944 NM_201266 8828 Hs.471200 NM_003872 HPRD:03643 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 13-PTNLD9-TUMOR_peak_37476 chr3 197205685 197205945 + 14.86784 NA Intergenic Intergenic 77043 NM_203314 622 Hs.274539 NM_004051 HPRD:04344 BDH1 BDH|SDR9C1 3-hydroxybutyrate dehydrogenase, type 1 protein-coding 13-PTNLD9-TUMOR_peak_38941 chr4 99981418 99981842 + 14.86784 NA intron (NM_015143, intron 10 of 10) AluY|SINE|Alu 28309 NM_000671 128 Hs.78989 NM_000671 HPRD:00064 ADH5 ADH-3|ADHX|FALDH|FDH|GSH-FDH|GSNOR alcohol dehydrogenase 5 (class III), chi polypeptide protein-coding 13-PTNLD9-TUMOR_peak_44544 chr6 31528272 31528418 + 14.86784 NA Intergenic Intergenic -11531 NM_001159740 4049 Hs.36 NM_000595 HPRD:01084 LTA LT|TNFB|TNFSF1 lymphotoxin alpha protein-coding 13-PTNLD9-TUMOR_peak_42679 chr5 150643706 150643871 + 14.86784 NA intron (NM_001167607, intron 2 of 3) intron (NM_001167607, intron 2 of 3) 11175 NM_000405 2760 Hs.483873 NM_000405 HPRD:02034 GM2A GM2-AP|SAP-3 GM2 ganglioside activator protein-coding 13-PTNLD9-TUMOR_peak_2108 chr1 66840546 66840709 + 14.86784 NA TTS (NM_001037339) TTS (NM_001037339) 20566 NM_001297442 5142 Hs.198072 NM_002600 HPRD:02528 PDE4B DPDE4|PDEIVB phosphodiesterase 4B, cAMP-specific protein-coding 13-PTNLD9-TUMOR_peak_43961 chr6 16762693 16763158 + 14.86568 NA Intergenic CpG-21742 -1204 NM_000332 6310 Hs.434961 NM_000332 HPRD:03333 ATXN1 ATX1|D6S504E|SCA1 ataxin 1 protein-coding 13-PTNLD9-TUMOR_peak_28940 chr2 163783155 163783313 + 14.86154 NA Intergenic Intergenic -87977 NM_033272 90134 Hs.657413 NM_033272 HPRD:16295 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel, subfamily H (eag-related), member 7 protein-coding 13-PTNLD9-TUMOR_peak_22260 chr17 79269036 79269204 + 14.86154 NA promoter-TSS (NM_001037984) promoter-TSS (NM_001037984) 19 NM_001037984 124565 Hs.352240 NM_138570 HPRD:17506 SLC38A10 - solute carrier family 38, member 10 protein-coding 13-PTNLD9-TUMOR_peak_18131 chr16 134761 134968 + 14.86154 NA TTS (NM_001039476) TTS (NM_001039476) 6695 NM_001015052 4350 Hs.459596 NM_002434 HPRD:06766 MPG AAG|ADPG|APNG|CRA36.1|MDG|Mid1|PIG11|PIG16|anpg N-methylpurine-DNA glycosylase protein-coding 13-PTNLD9-TUMOR_peak_28670 chr2 148345841 148346080 + 14.86150 NA Intergenic Intergenic -256126 NM_001278580 92 Hs.470174 NM_001616 HPRD:00025 ACVR2A ACTRII|ACVR2 activin A receptor, type IIA protein-coding 13-PTNLD9-TUMOR_peak_40259 chr5 9014331 9014495 + 14.86150 NA Intergenic AluSc5|SINE|Alu 39594 NR_039779 100616326 NR_039779 MIR4636 - microRNA 4636 ncRNA 13-PTNLD9-TUMOR_peak_29209 chr2 178516610 178516759 + 14.86150 NA intron (NM_001077197, intron 20 of 20) intron (NM_001077197, intron 20 of 20) -32990 NM_152275 92104 Hs.128384 NM_152275 TTC30A - tetratricopeptide repeat domain 30A protein-coding 13-PTNLD9-TUMOR_peak_43251 chr5 177758465 177758941 + 14.86150 NA intron (NM_173465, intron 2 of 28) intron (NM_173465, intron 2 of 28) -98880 NR_103509 85007 Hs.248746 NM_153373 HPRD:18482 PHYKPL AGXT2L2|PHLU 5-phosphohydroxy-L-lysine phospho-lyase protein-coding 13-PTNLD9-TUMOR_peak_45138 chr6 44140475 44140743 + 14.86150 NA intron (NM_007058, intron 5 of 22) intron (NM_007058, intron 5 of 22) 14061 NM_007058 11131 Hs.225953 NM_007058 HPRD:05315 CAPN11 calpain11 calpain 11 protein-coding 13-PTNLD9-TUMOR_peak_17487 chr15 67175747 67176157 + 14.86150 NA Intergenic Intergenic 175022 NM_001142861 4091 Hs.153863 NM_005585 HPRD:04240 SMAD6 AOVD2|HsT17432|MADH6|MADH7 SMAD family member 6 protein-coding 13-PTNLD9-TUMOR_peak_41971 chr5 127772566 127772865 + 14.86150 NA intron (NM_001999, intron 7 of 64) intron (NM_001999, intron 7 of 64) 101020 NM_001999 2201 Hs.519294 NM_001999 HPRD:00416 FBN2 CCA|DA9 fibrillin 2 protein-coding 13-PTNLD9-TUMOR_peak_5492 chr1 222971589 222971781 + 14.86150 NA Intergenic Intergenic -16746 NM_032890 84976 Hs.528817 NM_032890 HPRD:06326 DISP1 DISPA dispatched homolog 1 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_38828 chr4 87965640 87965947 + 14.86150 NA intron (NM_005935, intron 1 of 19) intron (NM_005935, intron 1 of 19) 37640 NM_005935 4299 Hs.480190 NM_005935 HPRD:08871 AFF1 AF4|MLLT2|PBM1 AF4/FMR2 family, member 1 protein-coding 13-PTNLD9-TUMOR_peak_50449 chr8 27831095 27831320 + 14.86150 NA intron (NM_173833, intron 2 of 8) intron (NM_173833, intron 2 of 8) 19162 NM_173833 286133 Hs.591833 NM_173833 HPRD:11356 SCARA5 NET33|Tesr scavenger receptor class A, member 5 protein-coding 13-PTNLD9-TUMOR_peak_16949 chr15 31764003 31764373 + 14.86150 NA Intergenic ERVL-E-int|LTR|ERVL 145105 NM_015995 51621 Hs.525752 NM_015995 HPRD:05620 KLF13 BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1 Kruppel-like factor 13 protein-coding 13-PTNLD9-TUMOR_peak_33750 chr3 10845848 10846405 + 14.86150 NA Intergenic MLT1F|LTR|ERVL-MaLR -11791 NM_014229 6538 Hs.657405 NM_014229 SLC6A11 GAT-3|GAT3|GAT4 solute carrier family 6 (neurotransmitter transporter), member 11 protein-coding 13-PTNLD9-TUMOR_peak_52904 chr9 21831942 21832483 + 14.86150 NA intron (NM_002451, intron 4 of 7) intron (NM_002451, intron 4 of 7) 29577 NM_002451 4507 Hs.193268 NM_002451 HPRD:01134 MTAP BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus methylthioadenosine phosphorylase protein-coding 13-PTNLD9-TUMOR_peak_44493 chr6 30853867 30854143 + 14.85543 NA intron (NM_013993, intron 2 of 18) intron (NM_013993, intron 2 of 18) 1248 NM_001202523 780 Hs.631988 NM_001954 HPRD:02678 DDR1 CAK|CD167|DDR|EDDR1|HGK2|MCK10|NEP|NTRK4|PTK3|PTK3A|RTK6|TRKE discoidin domain receptor tyrosine kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_43035 chr5 172199448 172199704 + 14.85522 NA Intergenic CpG-21390 -1373 NM_004417 1843 Hs.171695 NM_004417 HPRD:02835 DUSP1 CL100|HVH1|MKP-1|MKP1|PTPN10 dual specificity phosphatase 1 protein-coding 13-PTNLD9-TUMOR_peak_33033 chr22 27870986 27871352 + 14.84801 NA Intergenic Intergenic 326317 NM_002430 4330 Hs.268515 NM_002430 HPRD:08862 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 meningioma (disrupted in balanced translocation) 1 protein-coding 13-PTNLD9-TUMOR_peak_5067 chr1 203242345 203242638 + 14.84801 NA Intergenic Intergenic -13789 NR_117097 100506775 Hs.443859 NR_117097 LINC01353 - long intergenic non-protein coding RNA 1353 ncRNA 13-PTNLD9-TUMOR_peak_337 chr1 9536877 9537309 + 14.84801 NA Intergenic Intergenic -48038 NR_104622 100506022 Hs.131775 NR_104622 LOC100506022 - uncharacterized LOC100506022 ncRNA 13-PTNLD9-TUMOR_peak_42612 chr5 149401802 149402009 + 14.84801 NA intron (NM_014983, intron 6 of 19) L5|LINE|RTE -21175 NM_030953 81789 Hs.169333 NM_030953 HPRD:18190 TIGD6 - tigger transposable element derived 6 protein-coding 13-PTNLD9-TUMOR_peak_1544 chr1 45083117 45083381 + 14.84801 NA intron (NM_018150, intron 3 of 14) CpG 57031 NM_024587 79639 Hs.22157 NM_024587 HPRD:07989 TMEM53 NET4 transmembrane protein 53 protein-coding 13-PTNLD9-TUMOR_peak_31671 chr20 56010805 56011210 + 14.84106 NA Intergenic Intergenic 44553 NM_001291780 55544 Hs.236361 NM_017495 HPRD:15268 RBM38 HSRNASEB|RNPC1|SEB4B|SEB4D|dJ800J21.2 RNA binding motif protein 38 protein-coding 13-PTNLD9-TUMOR_peak_19531 chr16 66542258 66542531 + 14.83848 NA non-coding (NR_073520, exon 9 of 9) non-coding (NR_073520, exon 9 of 9) -32089 NR_109960 101927726 Hs.739193 NR_109960 BEAN1-AS1 CTD-2258A20.5 BEAN1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_39669 chr4 153891715 153891984 + 14.83789 NA intron (NM_033393, intron 9 of 10) intron (NM_033393, intron 9 of 10) 27714 NM_033393 85462 Hs.132629 NM_033393 HPRD:13888 FHDC1 - FH2 domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_31464 chr20 49378865 49379236 + 14.83717 NA Intergenic AluJo|SINE|Alu 30969 NM_032521 84612 Hs.589848 NM_032521 HPRD:18703 PARD6B PAR6B par-6 family cell polarity regulator beta protein-coding 13-PTNLD9-TUMOR_peak_5796 chr1 230849898 230850088 + 14.83493 NA 5' UTR (NM_000029, exon 1 of 5) 5' UTR (NM_000029, exon 1 of 5) 343 NM_000029 183 Hs.19383 NM_000029 HPRD:00106 AGT ANHU|SERPINA8 angiotensinogen (serpin peptidase inhibitor, clade A, member 8) protein-coding 13-PTNLD9-TUMOR_peak_46106 chr6 136243362 136243621 + 14.83493 NA intron (NM_018945, intron 1 of 12) intron (NM_018945, intron 1 of 12) 70657 NM_018945 27115 Hs.744230 NM_018945 HPRD:06870 PDE7B bA472E5.1 phosphodiesterase 7B protein-coding 13-PTNLD9-TUMOR_peak_6732 chr10 25782093 25782351 + 14.83493 NA intron (NM_020752, intron 5 of 10) intron (NM_020752, intron 5 of 10) -158419 NR_108068 101929052 Hs.128298 NR_108067 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 13-PTNLD9-TUMOR_peak_28309 chr2 122262664 122262904 + 14.83493 NA intron (NM_001142274, intron 7 of 37) intron (NM_001142274, intron 7 of 37) -25672 NR_023343 100151683 Hs.689638 NR_023343 ENSG00000264229 RNU4ATAC MOPD1|RNU4ATAC1|TALS|U4ATAC RNA, U4atac small nuclear (U12-dependent splicing) snRNA 13-PTNLD9-TUMOR_peak_866 chr1 28743995 28744141 + 14.83493 NA intron (NM_001048183, intron 2 of 13) MER44B|DNA|TcMar-Tigger -20593 NM_023923 65979 Hs.225641 NM_023923 HPRD:07816 PHACTR4 PPP1R124 phosphatase and actin regulator 4 protein-coding 13-PTNLD9-TUMOR_peak_56424 chrX 119611373 119611680 + 14.83493 NA Intergenic MLT1L|LTR|ERVL-MaLR -8322 NM_013995 3920 Hs.496684 NM_002294 HPRD:02396 LAMP2 CD107b|LAMP-2|LAMPB|LGP110 lysosomal-associated membrane protein 2 protein-coding 13-PTNLD9-TUMOR_peak_30349 chr20 4878976 4879197 + 14.83493 NA intron (NM_005116, intron 6 of 16) intron (NM_005116, intron 6 of 16) -74795 NM_014737 9770 Hs.631504 NM_014737 HPRD:15218 RASSF2 CENP-34|RASFADIN Ras association (RalGDS/AF-6) domain family member 2 protein-coding 13-PTNLD9-TUMOR_peak_37603 chr4 2000136 2000286 + 14.83493 NA intron (NM_005663, intron 1 of 10) L1PA8A|LINE|L1 10751 NM_005663 7469 Hs.21771 NM_005663 HPRD:12080 NELFA NELF-A|WHSC2 negative elongation factor complex member A protein-coding 13-PTNLD9-TUMOR_peak_12463 chr12 32268729 32268942 + 14.83493 NA intron (NM_001003398, intron 1 of 8) intron (NM_001003398, intron 1 of 8) 8650 NM_001714 636 Hs.505202 NM_001714 HPRD:03730 BICD1 BICD bicaudal D homolog 1 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_8265 chr10 105505466 105505699 + 14.83493 NA promoter-TSS (NR_038940) promoter-TSS (NR_038940) -955 NR_038940 100505839 Hs.655149 NR_038940 SH3PXD2A-AS1 - SH3PXD2A antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_15127 chr13 111617696 111617920 + 14.83493 NA Intergenic LTR10F|LTR|ERV1 -50354 NM_001286721 55608 Hs.525163 NM_017664 HPRD:12455 ANKRD10 - ankyrin repeat domain 10 protein-coding 13-PTNLD9-TUMOR_peak_40549 chr5 32628236 32628509 + 14.83493 NA Intergenic Intergenic 42767 NM_006713 10923 Hs.229641 NM_006713 HPRD:02737 SUB1 P15|PC4|p14 SUB1 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_27190 chr2 69997508 69997657 + 14.83493 NA intron (NM_001153, intron 1 of 12) intron (NM_001153, intron 1 of 12) 28455 NM_001153 307 Hs.422986 NM_001153 HPRD:00112 ANXA4 ANX4|HEL-S-274|PIG28|ZAP36 annexin A4 protein-coding 13-PTNLD9-TUMOR_peak_14004 chr12 119646462 119646753 + 14.83493 NA Intergenic MER126|DNA|DNA 30012 NM_014365 26353 Hs.400095 NM_014365 HPRD:06420 HSPB8 CMT2L|DHMN2|E2IG1|H11|HMN2|HMN2A|HSP22 heat shock 22kDa protein 8 protein-coding 13-PTNLD9-TUMOR_peak_8878 chr11 3980722 3980899 + 14.83493 NA intron (NM_001277962, intron 1 of 12) intron (NM_001277962, intron 1 of 12) 103518 NR_039835 100616453 NR_039835 miRBase:MI0017319 MIR4687 - microRNA 4687 ncRNA 13-PTNLD9-TUMOR_peak_16403 chr14 89450213 89450378 + 14.83493 NA Intergenic Intergenic 159798 NM_001288782 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 13-PTNLD9-TUMOR_peak_29990 chr2 231646241 231646504 + 14.83493 NA intron (NM_016289, intron 2 of 8) intron (NM_016289, intron 2 of 8) 68109 NM_001130849 51719 Hs.603930 NM_016289 HPRD:10091 CAB39 MO25 calcium binding protein 39 protein-coding 13-PTNLD9-TUMOR_peak_44054 chr6 20117891 20118034 + 14.83493 NA intron (NR_073465, intron 6 of 9) intron (NR_073465, intron 6 of 9) 94733 NR_073465 154141 Hs.377830 NM_001080480 MBOAT1 1|LPEAT1|LPLAT|LPLAT 1|LPSAT|OACT1|dJ434O11.1 membrane bound O-acyltransferase domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_16505 chr14 95908991 95909125 + 14.83493 NA intron (NM_152592, intron 10 of 16) intron (NM_152592, intron 10 of 16) -32631 NR_026779 79686 Hs.41502 NM_024633 HPRD:16606 LINC00341 C14orf139|NCRNA00341 long intergenic non-protein coding RNA 341 ncRNA 13-PTNLD9-TUMOR_peak_31746 chr20 59761414 59761609 + 14.83493 NA Intergenic Intergenic -65971 NM_001794 1002 Hs.473231 NM_001794 HPRD:04304 CDH4 CAD4|R-CAD|RCAD cadherin 4, type 1, R-cadherin (retinal) protein-coding 13-PTNLD9-TUMOR_peak_8031 chr10 94652130 94652393 + 14.83493 NA intron (NM_019053, intron 1 of 21) MER77|LTR|ERVL 44036 NM_019053 54536 Hs.655657 NM_019053 HPRD:10216 EXOC6 EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p exocyst complex component 6 protein-coding 13-PTNLD9-TUMOR_peak_35412 chr3 113296768 113296932 + 14.83493 NA intron (NM_017699, intron 4 of 24) intron (NM_017699, intron 4 of 24) -16873 NR_039648 100616476 NR_039648 MIR4446 - microRNA 4446 ncRNA 13-PTNLD9-TUMOR_peak_32667 chr22 18189381 18189546 + 14.83493 NA promoter-TSS (NM_001270733) promoter-TSS (NM_001270733) 39 NM_001270733 23786 Hs.631672 NM_015367 HPRD:09822 BCL2L13 BCL-RAMBO|Bcl2-L-13|MIL1 BCL2-like 13 (apoptosis facilitator) protein-coding 13-PTNLD9-TUMOR_peak_20917 chr17 35278955 35279147 + 14.83493 NA Intergenic MIRb|SINE|MIR -15721 NM_005568 3975 Hs.443727 NM_005568 HPRD:09067 LHX1 LIM-1|LIM1 LIM homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_37747 chr4 5640090 5640360 + 14.83493 NA intron (NM_147127, intron 10 of 21) intron (NM_147127, intron 10 of 21) 70069 NM_147127 132884 Hs.87306 NM_147127 HPRD:06269 EVC2 LBN Ellis van Creveld syndrome 2 protein-coding 13-PTNLD9-TUMOR_peak_16655 chr14 104376665 104376853 + 14.83493 NA Intergenic Intergenic 11144 NM_001127393 9556 Hs.109052 NM_004894 HPRD:05199 C14orf2 MP68|PLPM chromosome 14 open reading frame 2 protein-coding 13-PTNLD9-TUMOR_peak_15231 chr14 20645643 20645857 + 14.83493 NA Intergenic HERV1_LTRe|LTR|ERV1 -19745 NM_001005503 390439 Hs.554582 NM_001005503 HPRD:14900 OR11G2 OR14-34 olfactory receptor, family 11, subfamily G, member 2 protein-coding 13-PTNLD9-TUMOR_peak_34401 chr3 45089861 45090014 + 14.83493 NA Intergenic LTR16B1|LTR|ERVL 22178 NM_003278 7123 Hs.476092 NM_003278 HPRD:01759 CLEC3B TN|TNA C-type lectin domain family 3, member B protein-coding 13-PTNLD9-TUMOR_peak_55571 chrX 15511383 15511582 + 14.83493 NA 5' UTR (NM_003662, exon 1 of 10) 5' UTR (NM_003662, exon 1 of 10) 229 NM_003662 8544 Hs.495728 NM_003662 HPRD:04510 PIR - pirin (iron-binding nuclear protein) protein-coding 13-PTNLD9-TUMOR_peak_36221 chr3 141746671 141746840 + 14.83493 NA intron (NM_001178139, intron 3 of 12) intron (NM_001178139, intron 3 of 12) 752 NM_001178142 7029 Hs.379018 NM_006286 HPRD:03696 TFDP2 DP2 transcription factor Dp-2 (E2F dimerization partner 2) protein-coding 13-PTNLD9-TUMOR_peak_50512 chr8 29815896 29816037 + 14.83493 NA Intergenic MLT1F2|LTR|ERVL-MaLR -1102 NR_036104 100422876 NR_036104 miRBase:MI0014175 MIR3148 - microRNA 3148 ncRNA 13-PTNLD9-TUMOR_peak_17046 chr15 38881780 38881983 + 14.83493 NA Intergenic Intergenic -24874 NM_001128602 10125 Hs.591127 NM_005739 HPRD:04909 RASGRP1 CALDAG-GEFI|CALDAG-GEFII|RASGRP|V|hRasGRP1 RAS guanyl releasing protein 1 (calcium and DAG-regulated) protein-coding 13-PTNLD9-TUMOR_peak_26172 chr2 12959252 12959514 + 14.83493 NA Intergenic Intergenic 81890 NR_036072 100422986 NR_036072 MIR3125 - microRNA 3125 ncRNA 13-PTNLD9-TUMOR_peak_41739 chr5 111748080 111748378 + 14.83493 NA intron (NM_022140, intron 1 of 22) intron (NM_022140, intron 1 of 22) 6781 NM_022140 64097 Hs.584954 NM_022140 HPRD:09939 EPB41L4A EPB41L4|NBL4 erythrocyte membrane protein band 4.1 like 4A protein-coding 13-PTNLD9-TUMOR_peak_12422 chr12 30570617 30570797 + 14.83493 NA Intergenic Intergenic 259471 NM_001190995 10526 Hs.505136 NM_006390 HPRD:09282 IPO8 RANBP8 importin 8 protein-coding 13-PTNLD9-TUMOR_peak_12051 chr12 7736830 7737059 + 14.83493 NA Intergenic LTR10A|LTR|ERV1 -80530 NM_004244 9332 Hs.504641 NM_004244 HPRD:05708 CD163 M130|MM130 CD163 molecule protein-coding 13-PTNLD9-TUMOR_peak_11295 chr11 115097333 115097598 + 14.83493 NA intron (NM_001301043, intron 5 of 11) intron (NM_001301043, intron 5 of 11) 277776 NM_014333 23705 Hs.370510 NM_014333 HPRD:05746 CADM1 BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 cell adhesion molecule 1 protein-coding 13-PTNLD9-TUMOR_peak_20855 chr17 32198765 32198909 + 14.83493 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 284988 NM_001094 40 Hs.368417 NM_001094 HPRD:03471 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid-sensing (proton-gated) ion channel 2 protein-coding 13-PTNLD9-TUMOR_peak_46082 chr6 134356995 134357124 + 14.83493 NA intron (NM_145176, intron 1 of 4) intron (NM_145176, intron 1 of 4) 16730 NM_145176 154091 Hs.486508 NM_145176 SLC2A12 GLUT12|GLUT8 solute carrier family 2 (facilitated glucose transporter), member 12 protein-coding 13-PTNLD9-TUMOR_peak_7834 chr10 80015910 80016111 + 14.83493 NA Intergenic Intergenic 7628 NR_038985 100132987 Hs.55047 NR_038985 ENSG00000230417 LINC00856 - long intergenic non-protein coding RNA 856 ncRNA 13-PTNLD9-TUMOR_peak_14456 chr13 26596903 26597071 + 14.83493 NA Intergenic Intergenic 28211 NM_001007538 387914 Hs.433791 NM_001007538 HPRD:16589 SHISA2 C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa shisa family member 2 protein-coding 13-PTNLD9-TUMOR_peak_9854 chr11 56644244 56644357 + 14.83493 NA non-coding (NR_110136, exon 4 of 4) non-coding (NR_110136, exon 4 of 4) 28346 NR_110136 101927120 Hs.472675 NR_110136 ENSG00000255433 LOC101927120 - uncharacterized LOC101927120 ncRNA 13-PTNLD9-TUMOR_peak_45481 chr6 72199526 72199725 + 14.83493 NA Intergenic Intergenic 68895 NR_121615 102724000 Hs.145785 NR_121615 LOC102724000 - uncharacterized LOC102724000 ncRNA 13-PTNLD9-TUMOR_peak_28669 chr2 148300789 148300973 + 14.83493 NA Intergenic Intergenic -301205 NM_001278580 92 Hs.470174 NM_001616 HPRD:00025 ACVR2A ACTRII|ACVR2 activin A receptor, type IIA protein-coding 13-PTNLD9-TUMOR_peak_27035 chr2 62571688 62571846 + 14.83493 NA Intergenic Intergenic 138806 NR_049824 100847087 NR_049824 miRBase:MI0018171 MIR5192 - microRNA 5192 ncRNA 13-PTNLD9-TUMOR_peak_28698 chr2 150222441 150222617 + 14.83493 NA intron (NM_194317, intron 1 of 4) intron (NM_194317, intron 1 of 4) 35500 NM_194317 130574 Hs.21929 NM_194317 HPRD:14676 LYPD6 - LY6/PLAUR domain containing 6 protein-coding 13-PTNLD9-TUMOR_peak_32431 chr21 43870228 43870459 + 14.83493 NA Intergenic AluSc|SINE|Alu 46121 NM_001286506 89765 Hs.661069 NM_080860 HPRD:11651 RSPH1 CILD24|RSP44|RSPH10A|TSA2|TSGA2 radial spoke head 1 homolog (Chlamydomonas) protein-coding 13-PTNLD9-TUMOR_peak_44893 chr6 38359105 38359269 + 14.83493 NA intron (NM_001099272, intron 6 of 10) intron (NM_001099272, intron 6 of 10) 204656 NM_001172418 114781 Hs.603858 NM_052893 HPRD:12543 BTBD9 dJ322I12.1 BTB (POZ) domain containing 9 protein-coding 13-PTNLD9-TUMOR_peak_5649 chr1 226631197 226631399 + 14.83493 NA Intergenic Intergenic -35497 NM_001618 142 Hs.177766 NM_001618 HPRD:01435 PARP1 ADPRT|ADPRT 1|ADPRT1|ARTD1|PARP|PARP-1|PPOL|pADPRT-1 poly (ADP-ribose) polymerase 1 protein-coding 13-PTNLD9-TUMOR_peak_51802 chr8 123770496 123770673 + 14.83493 NA Intergenic Intergenic -23317 NM_014943 22882 Hs.377090 NM_014943 HPRD:16458 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 13-PTNLD9-TUMOR_peak_54410 chr9 112555617 112555796 + 14.83493 NA intron (NM_001037293, intron 2 of 6) intron (NM_001037293, intron 2 of 6) 13129 NM_007203 445815 Hs.591908 NM_007203 HPRD:09197 PALM2-AKAP2 AKAP2 PALM2-AKAP2 readthrough protein-coding 13-PTNLD9-TUMOR_peak_14897 chr13 78109624 78109850 + 14.83493 NA promoter-TSS (NM_001160706) promoter-TSS (NM_001160706) -72 NM_144777 8796 Hs.534699 NM_003843 HPRD:09161 SCEL - sciellin protein-coding 13-PTNLD9-TUMOR_peak_49922 chr8 341899 342050 + 14.83493 NA Intergenic Intergenic -8800 NR_103537 157693 Hs.591390 NR_103537 FAM87A - family with sequence similarity 87, member A ncRNA 13-PTNLD9-TUMOR_peak_53751 chr9 83314441 83314661 + 14.83493 NA Intergenic Intergenic 724613 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 - long intergenic non-protein coding RNA 1507 ncRNA 13-PTNLD9-TUMOR_peak_16993 chr15 33741267 33741503 + 14.83493 NA intron (NM_001243996, intron 1 of 102) MLT1F2|LTR|ERVL-MaLR 138208 NM_001243996 6263 Hs.709373 NM_001036 HPRD:01620 RYR3 RYR-3 ryanodine receptor 3 protein-coding 13-PTNLD9-TUMOR_peak_2986 chr1 116665623 116665859 + 14.83493 NA intron (NM_152367, intron 3 of 6) intron (NM_152367, intron 3 of 6) 11365 NM_152367 126868 Hs.376194 NM_152367 HPRD:08245 MAB21L3 C1orf161 mab-21-like 3 (C. elegans) protein-coding 13-PTNLD9-TUMOR_peak_9908 chr11 57774590 57774704 + 14.83493 NA Intergenic Intergenic -16706 NM_001005212 219956 Hs.689841 NM_001005212 HPRD:17800 OR9Q1 - olfactory receptor, family 9, subfamily Q, member 1 protein-coding 13-PTNLD9-TUMOR_peak_24819 chr19 37095593 37095794 + 14.83493 NA promoter-TSS (NM_032825) promoter-TSS (NM_032825) 485 NM_001145649 57711 Hs.654960 NM_020951 HPRD:15821 ZNF529 - zinc finger protein 529 protein-coding 13-PTNLD9-TUMOR_peak_9111 chr11 12768175 12768412 + 14.83493 NA intron (NM_021961, intron 2 of 12) intron (NM_021961, intron 2 of 12) 72324 NM_021961 7003 Hs.655331 NM_021961 HPRD:01802 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain family member 1 (SV40 transcriptional enhancer factor) protein-coding 13-PTNLD9-TUMOR_peak_38226 chr4 40596925 40597046 + 14.83493 NA intron (NM_001098634, intron 1 of 6) MLT1L|LTR|ERVL-MaLR 34898 NM_001098634 54502 Hs.518727 NM_019027 ENSG00000163694 RBM47 NET18 RNA binding motif protein 47 protein-coding 13-PTNLD9-TUMOR_peak_43686 chr6 7641219 7641522 + 14.83493 NA Intergenic MER70B|LTR|ERVL 50938 NM_152551 154007 Hs.13366 NM_152551 HPRD:12858 SNRNP48 C6orf151|dJ336K20B.1|dJ512B11.2 small nuclear ribonucleoprotein 48kDa (U11/U12) protein-coding 13-PTNLD9-TUMOR_peak_10061 chr11 62248247 62248487 + 14.83493 NA intron (NM_024060, intron 5 of 5) intron (NM_024060, intron 5 of 5) 61860 NM_003357 7356 Hs.523732 NM_003357 HPRD:01884 SCGB1A1 CC10|CC16|CCPBP|CCSP|UGB|UP-1|UP1 secretoglobin, family 1A, member 1 (uteroglobin) protein-coding 13-PTNLD9-TUMOR_peak_52810 chr9 16399981 16400120 + 14.83493 NA Intergenic Intergenic -123739 NR_073471 100129385 Hs.586441 NM_001271829 ENSG00000205549 C9orf92 Em:AL513424.1 chromosome 9 open reading frame 92 protein-coding 13-PTNLD9-TUMOR_peak_14915 chr13 80614736 80615032 + 14.83493 NA Intergenic Intergenic 29672 NR_104138 101515984 Hs.569290 NR_104138 LINC01080 TCONS_00021856 long intergenic non-protein coding RNA 1080 ncRNA 13-PTNLD9-TUMOR_peak_11309 chr11 116165451 116165668 + 14.83493 NA Intergenic ERVL-B4-int|LTR|ERVL 478155 NM_032725 84811 Hs.437341 NM_032725 HPRD:11307 BUD13 Cwc26|fSAP71 BUD13 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_56276 chrX 100352945 100353200 + 14.83493 NA Intergenic CpG -1726 NM_006733 2491 Hs.348920 NM_006733 HPRD:02089 CENPI CENP-I|FSHPRH1|LRPR1|Mis6 centromere protein I protein-coding 13-PTNLD9-TUMOR_peak_41268 chr5 73359654 73359895 + 14.83493 NA Intergenic L1ME2z|LINE|L1 244376 NR_105009 102503429 Hs.519391 NR_105009 LINC01335 - long intergenic non-protein coding RNA 1335 ncRNA 13-PTNLD9-TUMOR_peak_5413 chr1 219944411 219944731 + 14.83493 NA Intergenic Intergenic -102048 NR_002753 26828 NR_002753 ENSG00000199377 RNU5F-1 RNU5F|U5F RNA, U5F small nuclear 1 snRNA 13-PTNLD9-TUMOR_peak_32097 chr21 31476717 31476873 + 14.83493 NA Intergenic Intergenic 62176 NM_012131 26285 Hs.258589 NM_012131 HPRD:10833 CLDN17 - claudin 17 protein-coding 13-PTNLD9-TUMOR_peak_50370 chr8 24151461 24151662 + 14.83493 NA promoter-TSS (NM_021777) promoter-TSS (NM_021777) -19 NM_021777 10863 Hs.174030 NM_014265 HPRD:08391 ADAM28 ADAM 28|ADAM23|MDC-L|MDC-Lm|MDC-Ls|MDCL|eMDC II|eMDCII ADAM metallopeptidase domain 28 protein-coding 13-PTNLD9-TUMOR_peak_56969 chrY 14114556 14114719 + 14.83493 NA Intergenic L1PA2|LINE|L1 418752 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_42500 chr5 146036305 146036547 + 14.83493 NA intron (NR_073526, intron 4 of 8) intron (NR_073526, intron 4 of 8) -140750 NM_194251 134391 Hs.483732 NM_194251 GPR151 GALR4|GALRL|GPCR|PGR7 G protein-coupled receptor 151 protein-coding 13-PTNLD9-TUMOR_peak_19391 chr16 55983546 55983722 + 14.83493 NA intron (NM_001190158, intron 2 of 13) intron (NM_001190158, intron 2 of 13) 6309 NM_001190158 221223 Hs.350800 NM_145024 HPRD:07016 CES5A CAUXIN|CES4C1|CES5|CES7|HEL126 carboxylesterase 5A protein-coding 13-PTNLD9-TUMOR_peak_15879 chr14 58192460 58192647 + 14.83493 NA intron (NM_001206920, intron 1 of 7) HERVL-int|LTR|ERVL 140039 NM_001206920 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35, member F4 protein-coding 13-PTNLD9-TUMOR_peak_30059 chr2 235020281 235020490 + 14.83493 NA Intergenic MLT1F|LTR|ERVL-MaLR 61039 NM_006944 6694 Hs.444488 NM_006944 HPRD:04029 SPP2 SPP-24|SPP24 secreted phosphoprotein 2, 24kDa protein-coding 13-PTNLD9-TUMOR_peak_32214 chr21 36074760 36074975 + 14.83493 NA intron (NM_053277, intron 1 of 5) intron (NM_053277, intron 1 of 5) 33179 NM_053277 54102 Hs.473695 NM_053277 ENSG00000159212 CLIC6 CLIC1L chloride intracellular channel 6 protein-coding 13-PTNLD9-TUMOR_peak_46356 chr6 154731773 154731968 + 14.83493 NA intron (NM_173515, intron 11 of 12) intron (NM_173515, intron 11 of 12) -53970 NM_001130700 26034 Hs.146100 NM_015553 HPRD:17851 IPCEF1 PIP3-E interaction protein for cytohesin exchange factors 1 protein-coding 13-PTNLD9-TUMOR_peak_7812 chr10 79110511 79110710 + 14.83493 NA intron (NM_001271518, intron 1 of 27) intron (NM_001271518, intron 1 of 27) 210021 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_5172 chr1 204732987 204733186 + 14.83493 NA Intergenic Intergenic -64696 NM_015090 23114 Hs.13349 NM_015090 HPRD:12372 NFASC NF|NRCAML neurofascin protein-coding 13-PTNLD9-TUMOR_peak_936 chr1 31643659 31643869 + 14.83493 NA Intergenic Intergenic 68970 NM_024522 79570 Hs.470259 NM_024522 HPRD:07786 NKAIN1 FAM77C Na+/K+ transporting ATPase interacting 1 protein-coding 13-PTNLD9-TUMOR_peak_30285 chr20 2217778 2218108 + 14.83493 NA Intergenic Intergenic 30369 NM_001287682 388780 Hs.132163 NM_001287682 LOC388780 - uncharacterized LOC388780 protein-coding 13-PTNLD9-TUMOR_peak_9104 chr11 12609189 12609439 + 14.83493 NA Intergenic Intergenic -86655 NM_021961 7003 Hs.655331 NM_021961 HPRD:01802 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain family member 1 (SV40 transcriptional enhancer factor) protein-coding 13-PTNLD9-TUMOR_peak_32321 chr21 40152386 40152507 + 14.83493 NA Intergenic Intergenic -7045 NR_027065 400866 Hs.278704 NM_001001789 HPRD:10744 LINC00114 C21orf24|NCRNA00114 long intergenic non-protein coding RNA 114 ncRNA 13-PTNLD9-TUMOR_peak_42829 chr5 159087566 159087687 + 14.83493 NA Intergenic L2b|LINE|L2 -194342 NR_027110 285627 Hs.552766 NR_027110 ENSG00000253298 LOC285627 - uncharacterized LOC285627 ncRNA 13-PTNLD9-TUMOR_peak_13597 chr12 102319209 102319454 + 14.83493 NA Intergenic Intergenic 48226 NM_018370 55332 Hs.525634 NM_018370 HPRD:07743 DRAM1 DRAM DNA-damage regulated autophagy modulator 1 protein-coding 13-PTNLD9-TUMOR_peak_34686 chr3 53498558 53498741 + 14.83493 NA Intergenic Intergenic -30427 NM_001128840 776 Hs.476358 NM_000720 HPRD:00247 CACNA1D CACH3|CACN4|CACNL1A2|CCHL1A2|Cav1.3|PASNA|SANDD calcium channel, voltage-dependent, L type, alpha 1D subunit protein-coding 13-PTNLD9-TUMOR_peak_1041 chr1 34283813 34283937 + 14.83493 NA intron (NM_052896, intron 9 of 69) intron (NM_052896, intron 9 of 69) -42201 NM_145205 127540 Hs.568628 NM_145205 HPRD:14038 HMGB4 dJ1007G16.5 high mobility group box 4 protein-coding 13-PTNLD9-TUMOR_peak_11363 chr11 118081851 118082031 + 14.83493 NA intron (NR_104479, intron 2 of 8) intron (NR_104479, intron 2 of 8) 2133 NM_153206 120425 Hs.16291 NM_153206 HPRD:16482 AMICA1 AMICA|CREA7-1|CREA7-4|Gm638|JAML adhesion molecule, interacts with CXADR antigen 1 protein-coding 13-PTNLD9-TUMOR_peak_9279 chr11 19690093 19690364 + 14.83493 NA intron (NM_001111018, intron 1 of 37) intron (NM_001111018, intron 1 of 37) -44653 NM_145117 89797 Hs.64341 NM_145117 HPRD:07385 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 13-PTNLD9-TUMOR_peak_40561 chr5 33321200 33321463 + 14.83493 NA Intergenic Intergenic -119471 NM_001258437 6897 Hs.481860 NM_152295 HPRD:01762 TARS ThrRS threonyl-tRNA synthetase protein-coding 13-PTNLD9-TUMOR_peak_10461 chr11 69682534 69682708 + 14.83493 NA Intergenic Intergenic -48429 NM_005247 2248 Hs.37092 NM_005247 FGF3 HBGF-3|INT2 fibroblast growth factor 3 protein-coding 13-PTNLD9-TUMOR_peak_8992 chr11 8939100 8939245 + 14.83493 NA intron (NM_001206646, intron 4 of 4) intron (NM_001206646, intron 4 of 4) 6433 NR_045417 56672 Hs.131180 NM_020642 HPRD:12380 AKIP1 BCA3|C11orf17 A kinase (PRKA) interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_52813 chr9 16461599 16461764 + 14.83493 NA intron (NM_017637, intron 5 of 6) intron (NM_017637, intron 5 of 6) -185370 NR_073471 100129385 Hs.586441 NM_001271829 ENSG00000205549 C9orf92 Em:AL513424.1 chromosome 9 open reading frame 92 protein-coding 13-PTNLD9-TUMOR_peak_15491 chr14 33297850 33298012 + 14.83493 NA intron (NM_004274, intron 13 of 13) intron (NM_004274, intron 13 of 13) -110528 NM_001164749 64067 Hs.657892 NM_022123 HPRD:11400 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 13-PTNLD9-TUMOR_peak_8566 chr10 126952262 126952442 + 14.83493 NA Intergenic Intergenic -102728 NM_001083914 1488 Hs.501345 NM_001329 HPRD:04016 CTBP2 - C-terminal binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_38269 chr4 47533375 47533559 + 14.83493 NA intron (NM_020453, intron 5 of 22) L2c|LINE|L2 46057 NM_020453 57205 Hs.437241 NM_020453 HPRD:16518 ATP10D ATPVD ATPase, class V, type 10D protein-coding 13-PTNLD9-TUMOR_peak_47519 chr7 54856499 54856656 + 14.83493 NA intron (NR_110040, intron 2 of 2) intron (NR_110040, intron 2 of 2) 29571 NR_110040 100996654 Hs.127991 NR_110040 LOC100996654 - uncharacterized LOC100996654 ncRNA 13-PTNLD9-TUMOR_peak_26827 chr2 47020699 47021092 + 14.83493 NA Intergenic MER72|LTR|ERV1 -22912 NR_034099 388948 Hs.728895 NR_034099 ENSG00000222005 LINC01118 - long intergenic non-protein coding RNA 1118 ncRNA 13-PTNLD9-TUMOR_peak_53658 chr9 77375246 77375564 + 14.83493 NA intron (NM_001177311, intron 27 of 38) Tigger3c|DNA|TcMar-Tigger 126858 NM_001177311 140803 Hs.272225 NM_017662 HPRD:06112 TRPM6 CHAK2|HMGX|HOMG|HOMG1|HSH transient receptor potential cation channel, subfamily M, member 6 protein-coding 13-PTNLD9-TUMOR_peak_40044 chr4 187054155 187054281 + 14.83493 NA Intergenic Kanga1b|DNA|TcMar-Tc2 -11777 NM_015398 25854 Hs.744961 NM_015398 HPRD:16810 FAM149A MSTP119 family with sequence similarity 149, member A protein-coding 13-PTNLD9-TUMOR_peak_46306 chr6 151135251 151135370 + 14.83493 NA intron (NM_001029884, intron 11 of 16) intron (NM_001029884, intron 11 of 16) -51505 NM_001242769 25902 Hs.591343 NM_015440 HPRD:09967 MTHFD1L FTHFSDC1|MTC1THFS|dJ292B18.2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like protein-coding 13-PTNLD9-TUMOR_peak_52914 chr9 22080074 22080256 + 14.83493 NA intron (NR_003529, intron 12 of 18) intron (NR_003529, intron 12 of 18) -70853 NM_078487 1030 Hs.72901 NM_004936 HPRD:02696 CDKN2B CDK4I|INK4B|MTS2|P15|TP15|p15INK4b cyclin-dependent kinase inhibitor 2B (p15, inhibits CDK4) protein-coding 13-PTNLD9-TUMOR_peak_16019 chr14 65035912 65036085 + 14.83493 NA intron (NM_172365, intron 7 of 11) intron (NM_172365, intron 7 of 11) 19378 NM_172365 145376 Hs.144696 NM_172365 HPRD:08505 PPP1R36 C14orf50 protein phosphatase 1, regulatory subunit 36 protein-coding 13-PTNLD9-TUMOR_peak_16493 chr14 94840157 94840361 + 14.83493 NA Intergenic Intergenic -7220 NR_110563 390502 Hs.525557 NM_006220 SERPINA2 ARGS|ATR|PIL|SERPINA2P|psiATR serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 2 (gene/pseudogene) protein-coding 13-PTNLD9-TUMOR_peak_27791 chr2 99286241 99286523 + 14.83493 NA intron (NM_012214, intron 4 of 15) MLT1I|LTR|ERVL-MaLR -6446 NM_001160154 11320 Hs.177576 NM_012214 HPRD:06860 MGAT4A GNT-IV|GNT-IVA|GnT-4a mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A protein-coding 13-PTNLD9-TUMOR_peak_31743 chr20 58824597 58824743 + 14.83493 NA intron (NR_046099, intron 3 of 4) MIRb|SINE|MIR 111122 NR_046099 284757 Hs.737441 NM_001004305 HPRD:17342 MIR646HG - MIR646 host gene (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_35046 chr3 78873073 78873342 + 14.83493 NA intron (NM_001145845, intron 2 of 28) intron (NM_001145845, intron 2 of 28) 195402 NM_001145845 6091 Hs.744218 NM_002941 HPRD:03890 ROBO1 DUTT1|SAX3 roundabout, axon guidance receptor, homolog 1 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_16061 chr14 66845844 66846127 + 14.83493 NA Intergenic Intergenic -107104 NR_110308 440184 Hs.412138 NM_001004331 HPRD:14708 LINC00238 C14orf53|NCRNA00238 long intergenic non-protein coding RNA 238 ncRNA 13-PTNLD9-TUMOR_peak_50241 chr8 21441467 21441606 + 14.83493 NA Intergenic Intergenic 204810 NM_001495 2675 Hs.441202 NM_001495 HPRD:11801 GFRA2 GDNFRB|NRTNR-ALPHA|NTNRA|RETL2|TRNR2 GDNF family receptor alpha 2 protein-coding 13-PTNLD9-TUMOR_peak_10489 chr11 70634515 70634672 + 14.83493 NA intron (NM_012309, intron 11 of 22) Tigger7|DNA|TcMar-Tigger -74302 NR_073536 220070 Hs.326766 NM_145308 HPRD:14132 SHANK2-AS3 C11orf76 SHANK2 antisense RNA 3 ncRNA 13-PTNLD9-TUMOR_peak_55782 chrX 46988568 46988771 + 14.83493 NA Intergenic Intergenic 15940 NM_019056 54539 Hs.521969 NM_019056 HPRD:02323 NDUFB11 CI-ESSS|ESSS|NP17.3|Np15|P17.3 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11, 17.3kDa protein-coding 13-PTNLD9-TUMOR_peak_18427 chr16 8328260 8328503 + 14.83493 NA Intergenic Intergenic 259447 NM_001290098 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 13-PTNLD9-TUMOR_peak_15496 chr14 33992376 33992718 + 14.83493 NA intron (NM_001165893, intron 3 of 10) intron (NM_001165893, intron 3 of 10) 427737 NM_022073 112399 Hs.135507 NM_022073 HPRD:06972 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia-inducible factor 3 protein-coding 13-PTNLD9-TUMOR_peak_19426 chr16 57228633 57228827 + 14.83493 NA intron (NM_133368, intron 1 of 14) intron (NM_133368, intron 1 of 14) 8489 NM_133368 89970 Hs.460885 NM_133368 HPRD:13908 RSPRY1 - ring finger and SPRY domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_46195 chr6 143955682 143955968 + 14.83493 NA intron (NM_001100166, intron 1 of 11) intron (NM_001100166, intron 1 of 11) 26508 NM_014721 9749 Hs.102471 NM_014721 HPRD:16378 PHACTR2 C6orf56 phosphatase and actin regulator 2 protein-coding 13-PTNLD9-TUMOR_peak_41077 chr5 65543124 65543355 + 14.83493 NA Intergenic Intergenic 102576 NM_139168 140890 Hs.49367 NM_139168 HPRD:18043 SREK1 SFRS12|SRrp508|SRrp86 splicing regulatory glutamine/lysine-rich protein 1 protein-coding 13-PTNLD9-TUMOR_peak_9654 chr11 45281329 45281520 + 14.83493 NA intron (NM_001247987, intron 2 of 7) MLT1L|LTR|ERVL-MaLR 26460 NM_020826 57586 Hs.436643 NM_020826 HPRD:12128 SYT13 - synaptotagmin XIII protein-coding 13-PTNLD9-TUMOR_peak_8348 chr10 113338004 113338134 + 14.83493 NA Intergenic Intergenic 501279 NM_000681 150 Hs.249159 NM_000681 HPRD:00078 ADRA2A ADRA2|ADRA2R|ADRAR|ALPHA2AAR|ZNF32 adrenoceptor alpha 2A protein-coding 13-PTNLD9-TUMOR_peak_40674 chr5 39399711 39399933 + 14.83493 NA intron (NM_001244871, intron 1 of 13) intron (NM_001244871, intron 1 of 13) 25513 NM_001343 1601 Hs.696631 NM_001343 HPRD:03139 DAB2 DOC-2|DOC2 Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_54319 chr9 108801557 108801819 + 14.83493 NA Intergenic ERVL-E-int|LTR|ERVL 344882 NM_018112 55151 Hs.411925 NM_018112 HPRD:15538 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 13-PTNLD9-TUMOR_peak_28736 chr2 152616827 152617049 + 14.83493 NA Intergenic Intergenic -25937 NM_001271208 4703 Hs.588655 NM_004543 HPRD:01196 NEB NEB177D|NEM2 nebulin protein-coding 13-PTNLD9-TUMOR_peak_30276 chr20 1841085 1841364 + 14.83493 NA Intergenic Intergenic -33589 NM_001040022 140885 Hs.581021 NM_080792 HPRD:03912 SIRPA BIT|CD172A|MFR|MYD-1|P84|PTPNS1|SHPS1|SIRP signal-regulatory protein alpha protein-coding 13-PTNLD9-TUMOR_peak_12357 chr12 26646709 26646893 + 14.83493 NA intron (NM_002223, intron 39 of 56) intron (NM_002223, intron 39 of 56) 298295 NM_005086 8082 Hs.183428 NM_005086 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 13-PTNLD9-TUMOR_peak_20866 chr17 33390687 33390958 + 14.83493 NA promoter-TSS (NM_001017368) promoter-TSS (NM_001017368) -63 NM_001017368 117584 Hs.13680 NM_057178 HPRD:11489 RFFL CARP-2|CARP2|FRING|RIFIFYLIN|RNF189|RNF34L ring finger and FYVE-like domain containing E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_14547 chr13 31551959 31552171 + 14.83493 NA Intergenic Intergenic 45231 NM_152325 122046 Hs.124463 NM_152325 HPRD:17551 TEX26 C13orf26 testis expressed 26 protein-coding 13-PTNLD9-TUMOR_peak_54780 chr9 128437735 128437890 + 14.83493 NA intron (NM_001006618, intron 1 of 7) intron (NM_001006618, intron 1 of 7) 31701 NM_001006619 79109 Hs.495138 NM_024117 HPRD:17464 MAPKAP1 JC310|MIP1|SIN1|SIN1b|SIN1g mitogen-activated protein kinase associated protein 1 protein-coding 13-PTNLD9-TUMOR_peak_27757 chr2 97593684 97593865 + 14.83493 NA intron (NM_001122646, intron 9 of 16) intron (NM_001122646, intron 9 of 16) 8931 NR_110209 101927053 Hs.677537 NR_110209 LOC101927053 - uncharacterized LOC101927053 ncRNA 13-PTNLD9-TUMOR_peak_24602 chr19 28500651 28500790 + 14.83493 NA Intergenic Intergenic -215872 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 13-PTNLD9-TUMOR_peak_5398 chr1 218553927 218554095 + 14.83493 NA intron (NM_001135599, intron 2 of 7) intron (NM_001135599, intron 2 of 7) -34991 NR_046268 728463 Hs.568469 NR_046268 ENSG00000232480 TGFB2-AS1 - TGFB2 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_32242 chr21 37007651 37007851 + 14.83493 NA Intergenic Intergenic -54689 NR_073512 100506403 Hs.536609 NR_073512 ENSG00000159216 LOC100506403 - uncharacterized LOC100506403 ncRNA 13-PTNLD9-TUMOR_peak_42521 chr5 146889487 146889678 + 14.83493 NA promoter-TSS (NM_001197294) promoter-TSS (NM_001197294) 37 NM_001197294 1809 Hs.519659 NM_001387 HPRD:03104 DPYSL3 CRMP-4|CRMP4|DRP-3|DRP3|LCRMP|ULIP|ULIP-1 dihydropyrimidinase-like 3 protein-coding 13-PTNLD9-TUMOR_peak_43897 chr6 14744288 14744485 + 14.83493 NA Intergenic Intergenic -458701 NR_108096 102216342 Hs.563409 NR_108096 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 13-PTNLD9-TUMOR_peak_39924 chr4 182878394 182878524 + 14.83493 NA Intergenic Intergenic 187209 NR_027107 90768 Hs.175465 NM_178838 MGC45800 - uncharacterized LOC90768 ncRNA 13-PTNLD9-TUMOR_peak_5575 chr1 224401013 224401529 + 14.83327 NA promoter-TSS (NR_110669) promoter-TSS (NR_110669) -290 NR_110669 101927143 Hs.638720 NR_110669 ENSG00000232628 LOC101927143 - uncharacterized LOC101927143 ncRNA 13-PTNLD9-TUMOR_peak_51667 chr8 117625961 117626159 + 14.81583 NA Intergenic Intergenic 142002 NM_003756 8667 Hs.492599 NM_003756 EIF3H EIF3S3|eIF3-gamma|eIF3-p40 eukaryotic translation initiation factor 3, subunit H protein-coding 13-PTNLD9-TUMOR_peak_45073 chr6 43196956 43197381 + 14.81583 NA promoter-TSS (NM_199184) promoter-TSS (NM_199184) 43 NM_199184 10591 Hs.109752 NM_006443 HPRD:06707 DNPH1 C6orf108|RCL|dJ330M21.3 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 protein-coding 13-PTNLD9-TUMOR_peak_45864 chr6 109169827 109170059 + 14.81583 NA intron (NM_032131, intron 1 of 17) CpG 324 NM_032131 84071 Hs.645481 NM_032131 HPRD:09809 ARMC2 bA787I22.1 armadillo repeat containing 2 protein-coding 13-PTNLD9-TUMOR_peak_51936 chr8 127339551 127339855 + 14.81319 NA intron (NR_125421, intron 2 of 2) intron (NR_125421, intron 2 of 2) 1963 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 13-PTNLD9-TUMOR_peak_39026 chr4 107504829 107505119 + 14.81319 NA Intergenic Intergenic -216382 NM_001195138 100507096 Hs.722750 NM_001195138 GIMD1 - GIMAP family P-loop NTPase domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_4719 chr1 183668816 183669205 + 14.81319 NA intron (NM_001297669, intron 2 of 18) intron (NM_001297669, intron 2 of 18) -46562 NM_203454 403314 Hs.97335 NM_203454 HPRD:17522 APOBEC4 C1orf169 apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative) protein-coding 13-PTNLD9-TUMOR_peak_6346 chr10 4824196 4824396 + 14.81319 NA Intergenic Intergenic -44073 NM_001271021 83592 Hs.657944 NM_031436 HPRD:07472 AKR1E2 AKR1CL2|AKRDC1|LoopADR|hTSP|htAKR aldo-keto reductase family 1, member E2 protein-coding 13-PTNLD9-TUMOR_peak_37884 chr4 8357139 8357316 + 14.81319 NA Intergenic Intergenic 85225 NM_001101667 8310 Hs.479122 NM_003501 HPRD:04552 ACOX3 - acyl-CoA oxidase 3, pristanoyl protein-coding 13-PTNLD9-TUMOR_peak_1746 chr1 50837528 50837658 + 14.81319 NA Intergenic MLT1C|LTR|ERVL-MaLR 51526 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT-like family A2 protein-coding 13-PTNLD9-TUMOR_peak_49040 chr7 129505047 129505155 + 14.81319 NA intron (NM_003344, intron 3 of 6) intron (NM_003344, intron 3 of 6) 87682 NM_001202498 7328 Hs.643548 NM_003344 HPRD:03052 UBE2H E2-20K|GID3|UBC8|UBCH|UBCH2 ubiquitin-conjugating enzyme E2H protein-coding 13-PTNLD9-TUMOR_peak_32429 chr21 43816072 43816275 + 14.81319 NA promoter-TSS (NM_032405) promoter-TSS (NM_032405) 27 NM_032405 64699 Hs.208600 NM_024022 HPRD:05696 TMPRSS3 DFNB10|DFNB8|ECHOS1|TADG12 transmembrane protease, serine 3 protein-coding 13-PTNLD9-TUMOR_peak_28594 chr2 138727056 138727208 + 14.81319 NA intron (NM_006895, intron 1 of 5) L2|LINE|L2 5324 NM_001024075 3176 Hs.42151 NM_006895 HPRD:05575 HNMT HMT|HNMT-S1|HNMT-S2 histamine N-methyltransferase protein-coding 13-PTNLD9-TUMOR_peak_11582 chr11 127813741 127814094 + 14.81319 NA Intergenic Intergenic 578288 NM_005238 2113 Hs.369438 NM_005238 HPRD:01260 ETS1 ETS-1|EWSR2|p54 v-ets avian erythroblastosis virus E26 oncogene homolog 1 protein-coding 13-PTNLD9-TUMOR_peak_31718 chr20 57519732 57520055 + 14.81319 NA Intergenic ERVL-E-int|LTR|ERVL -36370 NM_198976 51497 Hs.517148 NM_016397 HPRD:16096 NELFCD NELF-C|NELF-D|TH1|TH1L negative elongation factor complex member C/D protein-coding 13-PTNLD9-TUMOR_peak_31088 chr20 40272271 40272443 + 14.81319 NA Intergenic Intergenic -25224 NM_032221 84181 Hs.740645 NM_032221 HPRD:13049 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 13-PTNLD9-TUMOR_peak_42638 chr5 149883548 149883744 + 14.80622 NA intron (NM_001301063, intron 1 of 13) intron (NM_001301063, intron 1 of 13) -4028 NM_001543 3340 Hs.222055 NM_001543 HPRD:02912 NDST1 HSST|NST1 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1 protein-coding 13-PTNLD9-TUMOR_peak_9727 chr11 47437689 47437940 + 14.80622 NA 3' UTR (NM_152264, exon 10 of 10) 3' UTR (NM_152264, exon 10 of 10) 7768 NM_001128225 91252 Hs.523664 NM_152264 ENSG00000165915 SLC39A13 - solute carrier family 39 (zinc transporter), member 13 protein-coding 13-PTNLD9-TUMOR_peak_25891 chr1_gl000192_random 468017 468291 + 14.80451 NA intron (NR_120328, intron 1 of 4) CpG 529 NR_120328 102724558 Hs.712738 NR_120328 LOC102724558 - uncharacterized LOC102724558 ncRNA 13-PTNLD9-TUMOR_peak_53229 chr9 38713451 38713724 + 14.80423 NA Intergenic L1MC4|LINE|L1 92502 NR_027294 158228 Hs.632652 NR_027294 FAM201A C9orf122 family with sequence similarity 201, member A ncRNA 13-PTNLD9-TUMOR_peak_11688 chr11 130870332 130870557 + 14.80423 NA Intergenic MER58A|DNA|hAT-Charlie -84062 NM_001301089 399979 Hs.444024 NM_014758 HPRD:18621 SNX19 CHET8 sorting nexin 19 protein-coding 13-PTNLD9-TUMOR_peak_1923 chr1 57877062 57877254 + 14.80423 NA intron (NM_021080, intron 3 of 16) intron (NM_021080, intron 3 of 16) -445345 NM_001278544 732 Hs.391835 NM_000066 HPRD:00410 C8B C82 complement component 8, beta polypeptide protein-coding 13-PTNLD9-TUMOR_peak_41085 chr5 65876542 65876666 + 14.80423 NA Intergenic Intergenic -15572 NM_001164664 375449 Hs.595458 NM_015183 HPRD:14195 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 13-PTNLD9-TUMOR_peak_52666 chr9 4417991 4418313 + 14.80423 NA Intergenic Intergenic -72275 NM_004170 6505 Hs.444915 NM_004170 HPRD:00597 SLC1A1 EAAC1|EAAT3|SCZD18 solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1 protein-coding 13-PTNLD9-TUMOR_peak_11982 chr12 6638146 6638310 + 14.80423 NA intron (NM_014865, intron 27 of 31) intron (NM_014865, intron 27 of 31) -5343 NM_001289745 2597 Hs.544577 NM_002046 HPRD:00713 GAPDH G3PD|GAPD|HEL-S-162eP glyceraldehyde-3-phosphate dehydrogenase protein-coding 13-PTNLD9-TUMOR_peak_2649 chr1 100826331 100826616 + 14.80423 NA intron (NM_003672, intron 2 of 15) intron (NM_003672, intron 2 of 15) 8450 NM_033312 8556 Hs.127411 NM_003672 HPRD:04614 CDC14A cdc14|hCDC14 cell division cycle 14A protein-coding 13-PTNLD9-TUMOR_peak_18490 chr16 10703332 10703465 + 14.80423 NA Intergenic Intergenic -28859 NM_001424 2013 Hs.531561 NM_001424 HPRD:11893 EMP2 NPHS10|XMP epithelial membrane protein 2 protein-coding 13-PTNLD9-TUMOR_peak_45469 chr6 71817604 71817811 + 14.80423 NA Intergenic Intergenic -150919 NM_080742 135152 Hs.713609 NM_080742 B3GAT2 GLCATS beta-1,3-glucuronyltransferase 2 protein-coding 13-PTNLD9-TUMOR_peak_40167 chr5 1003538 1003823 + 14.80308 NA Intergenic Intergenic -5397 NM_033120 85409 Hs.240951 NM_033120 HPRD:08483 NKD2 Naked2 naked cuticle homolog 2 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_49695 chr7 151494875 151495215 + 14.80308 NA intron (NM_016203, intron 1 of 15) intron (NM_016203, intron 1 of 15) 16912 NM_001040633 51422 Hs.647072 NM_016203 HPRD:04119 PRKAG2 AAKG|AAKG2|CMH6|H91620p|WPWS protein kinase, AMP-activated, gamma 2 non-catalytic subunit protein-coding 13-PTNLD9-TUMOR_peak_52898 chr9 21688272 21688476 + 14.80308 NA Intergenic Intergenic -114261 NM_002451 4507 Hs.193268 NM_002451 HPRD:01134 MTAP BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus methylthioadenosine phosphorylase protein-coding 13-PTNLD9-TUMOR_peak_9507 chr11 34393087 34393331 + 14.80146 NA Intergenic Intergenic -13654 NM_145804 25841 Hs.23361 NM_145804 HPRD:10624 ABTB2 ABTB2A|BTBD22 ankyrin repeat and BTB (POZ) domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_36903 chr3 181670180 181670304 + 14.80146 NA promoter-TSS (NR_104146) promoter-TSS (NR_104146) 90 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 13-PTNLD9-TUMOR_peak_42800 chr5 157791453 157791776 + 14.80146 NA intron (NR_109888, intron 3 of 6) LTR16E2|LTR|ERVL 45167 NR_109888 101927697 Hs.483960 NR_109888 LOC101927697 - uncharacterized LOC101927697 ncRNA 13-PTNLD9-TUMOR_peak_6934 chr10 35368787 35368939 + 14.80146 NA intron (NM_001198777, intron 1 of 20) Tigger7|DNA|TcMar-Tigger -5605 NM_001198778 8453 Hs.82919 NM_003591 HPRD:06786 CUL2 - cullin 2 protein-coding 13-PTNLD9-TUMOR_peak_5693 chr1 228225510 228225657 + 14.80146 NA intron (NM_033131, intron 2 of 3) CpG 30860 NM_033131 89780 Hs.336930 NM_033131 HPRD:05897 WNT3A - wingless-type MMTV integration site family, member 3A protein-coding 13-PTNLD9-TUMOR_peak_52233 chr8 136676862 136677266 + 14.80146 NA Intergenic Intergenic 207348 NM_006558 10656 Hs.444558 NM_006558 HPRD:10007 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH domain containing, RNA binding, signal transduction associated 3 protein-coding 13-PTNLD9-TUMOR_peak_45865 chr6 109268024 109268165 + 14.78401 NA intron (NM_032131, intron 12 of 17) intron (NM_032131, intron 12 of 17) -22788 NR_104137 101929716 NR_104137 ARMC2-AS1 - ARMC2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_44560 chr6 31688079 31688355 + 14.76843 NA intron (NM_025261, intron 1 of 2).2 intron (NM_025261, intron 1 of 2).2 1294 NM_025261 80740 Hs.732272 NM_025261 HPRD:14329 LY6G6C C6orf24|G6c|NG24 lymphocyte antigen 6 complex, locus G6C protein-coding 13-PTNLD9-TUMOR_peak_49129 chr7 131318181 131318376 + 14.76843 NA Intergenic Intergenic -76902 NM_001018111 5420 Hs.744213 NM_005397 HPRD:04025 PODXL Gp200|PC|PCLP|PCLP-1 podocalyxin-like protein-coding 13-PTNLD9-TUMOR_peak_8669 chr10 134385566 134385696 + 14.76843 NA intron (NM_005539, intron 1 of 15) intron (NM_005539, intron 1 of 15) 34278 NM_005539 3632 Hs.523360 NM_005539 HPRD:02521 INPP5A 5PTASE inositol polyphosphate-5-phosphatase, 40kDa protein-coding 13-PTNLD9-TUMOR_peak_39240 chr4 122632805 122633017 + 14.76843 NA Intergenic Intergenic -14764 NM_001154 308 Hs.480653 NM_001154 HPRD:00568 ANXA5 ANX5|ENX2|HEL-S-7|PP4|RPRGL3 annexin A5 protein-coding 13-PTNLD9-TUMOR_peak_18732 chr16 21529018 21529275 + 14.76722 NA TTS (NR_002594) TTS (NR_002594) 2619 NR_002594 387254 Hs.448808 NR_002594 SLC7A5P2 IMAA|MMAA solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_21776 chr17 62770327 62770702 + 14.76461 NA intron (NR_026899, intron 3 of 12) intron (NR_026899, intron 3 of 12) -6363 NR_106728 102464831 NR_106728 MIR6080 hsa-mir-6080 microRNA 6080 ncRNA 13-PTNLD9-TUMOR_peak_10389 chr11 67777565 67777910 + 14.76386 NA promoter-TSS (NM_001290059) promoter-TSS (NM_001290059) -38 NM_001290059 221 Hs.523841 NM_000694 HPRD:02716 ALDH3B1 ALDH4|ALDH7 aldehyde dehydrogenase 3 family, member B1 protein-coding 13-PTNLD9-TUMOR_peak_4726 chr1 183954724 183955022 + 14.76243 NA intron (NM_015101, intron 1 of 11) intron (NM_015101, intron 1 of 11) 51990 NM_015101 23127 Hs.387995 NM_015101 HPRD:13583 COLGALT2 C1orf17|GLT25D2 collagen beta(1-O)galactosyltransferase 2 protein-coding 13-PTNLD9-TUMOR_peak_10039 chr11 61813382 61813590 + 14.76243 NA Intergenic Intergenic -77959 NM_001040694 3619 Hs.142179 NM_020238 HPRD:05103 INCENP - inner centromere protein antigens 135/155kDa protein-coding 13-PTNLD9-TUMOR_peak_39023 chr4 107237552 107237889 + 14.76225 NA promoter-TSS (NM_001163437) promoter-TSS (NM_001163437) 56 NM_001142416 9255 Hs.591680 NM_004757 HPRD:04676 AIMP1 EMAP2|EMAPII|HLD3|SCYE1|p43 aminoacyl tRNA synthetase complex-interacting multifunctional protein 1 protein-coding 13-PTNLD9-TUMOR_peak_36079 chr3 137801434 137801583 + 14.76225 NA intron (NM_173543, intron 8 of 15) intron (NM_173543, intron 8 of 15) 30814 NM_001170538 199221 Hs.351403 NM_173543 HPRD:08145 DZIP1L DZIP2 DAZ interacting zinc finger protein 1-like protein-coding 13-PTNLD9-TUMOR_peak_7724 chr10 73931000 73931219 + 14.75705 NA intron (NM_001198800, intron 5 of 9) MLT1D|LTR|ERVL-MaLR -44649 NM_173473 119504 Hs.426296 NM_173473 HPRD:12554 ANAPC16 APC16|C10orf104|CENP-27|MSAG|bA570G20.3 anaphase promoting complex subunit 16 protein-coding 13-PTNLD9-TUMOR_peak_48176 chr7 82605180 82605404 + 14.75705 NA intron (NM_033026, intron 3 of 24) THE1D|LTR|ERVL-MaLR 186905 NM_014510 27445 Hs.12376 NM_014510 HPRD:16078 PCLO ACZ piccolo presynaptic cytomatrix protein protein-coding 13-PTNLD9-TUMOR_peak_13957 chr12 117308201 117308402 + 14.75705 NA intron (NR_073189, intron 3 of 4) intron (NR_073189, intron 3 of 4) 10931 NR_073189 8739 Hs.87247 NM_003806 HRK DP5|HARAKIRI harakiri, BCL2 interacting protein protein-coding 13-PTNLD9-TUMOR_peak_16466 chr14 93160413 93160727 + 14.75705 NA Intergenic LTR40a|LTR|ERVL 54477 NM_001008530 5641 Hs.18069 NM_005606 HPRD:04017 LGMN AEP|LGMN1|PRSC1 legumain protein-coding 13-PTNLD9-TUMOR_peak_11697 chr11 131367671 131367869 + 14.75705 NA intron (NM_001048209, intron 1 of 7) LTR10A|LTR|ERV1 42991 NR_110140 101929653 Hs.559159 NR_110140 ENSG00000237654 LOC101929653 - uncharacterized LOC101929653 ncRNA 13-PTNLD9-TUMOR_peak_4105 chr1 160731793 160731933 + 14.75705 NA Intergenic ERVL-B4-int|LTR|ERVL 23016 NM_001282593 57823 Hs.517265 NM_021181 HPRD:09432 SLAMF7 19A|CD319|CRACC|CS1 SLAM family member 7 protein-coding 13-PTNLD9-TUMOR_peak_19587 chr16 67438668 67439001 + 14.75705 NA intron (NM_013304, intron 3 of 10) intron (NM_013304, intron 3 of 10) -11396 NM_016140 51673 Hs.534458 NM_015964 HPRD:16710 TPPP3 TPPP/p20|p20|p25gamma tubulin polymerization-promoting protein family member 3 protein-coding 13-PTNLD9-TUMOR_peak_32412 chr21 43460642 43460935 + 14.75705 NA Intergenic L2b|LINE|L2 18410 NR_027273 150142 Hs.143833 NM_198078 ZNF295-AS1 C21orf121|NCRNA00318 ZNF295 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_12546 chr12 38450781 38451116 + 14.75705 NA Intergenic AluJr|SINE|Alu -259609 NM_001013620 144245 Hs.259305 NM_001013620 ALG10B ALG10|KCR1 ALG10B, alpha-1,2-glucosyltransferase protein-coding 13-PTNLD9-TUMOR_peak_44973 chr6 41456401 41456538 + 14.75705 NA Intergenic Intergenic -13713 NR_120347 103106903 Hs.563396 NR_120347 LINC01276 - long intergenic non-protein coding RNA 1276 ncRNA 13-PTNLD9-TUMOR_peak_26275 chr2 20778959 20779278 + 14.74692 NA Intergenic Intergenic 13190 NR_046836 100874343 Hs.591546 NR_046836 ENSG00000231948 HS1BP3-IT1 - HS1BP3 intronic transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_52572 chr9 38390 38639 + 14.74514 NA Intergenic MLT1E1A-int|LTR|ERVL-MaLR -2650 NR_026822 654835 Hs.569137 NR_026822 ENSG00000218839 FAM138C F379 family with sequence similarity 138, member C ncRNA 13-PTNLD9-TUMOR_peak_53202 chr9 37949700 37949962 + 14.74395 NA intron (NM_003028, intron 4 of 5) intron (NM_003028, intron 4 of 5) -45481 NR_024873 92014 Hs.634120 NM_033412 HPRD:14370 SLC25A51 CG7943|MCART1 solute carrier family 25, member 51 protein-coding 13-PTNLD9-TUMOR_peak_48618 chr7 101707615 101708220 + 14.74388 NA intron (NM_181552, intron 3 of 23) intron (NM_181552, intron 3 of 23) -220436 NM_020979 10603 Hs.489448 NM_020979 SH2B2 APS SH2B adaptor protein 2 protein-coding 13-PTNLD9-TUMOR_peak_14660 chr13 42270707 42270998 + 14.73818 NA intron (NM_015058, intron 29 of 44) L2a|LINE|L2 -128321 NR_049803 100847026 NR_049803 MIR5006 - microRNA 5006 ncRNA 13-PTNLD9-TUMOR_peak_9278 chr11 19681841 19681954 + 14.73818 NA intron (NM_001111018, intron 1 of 37) intron (NM_001111018, intron 1 of 37) -52984 NM_145117 89797 Hs.64341 NM_145117 HPRD:07385 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 13-PTNLD9-TUMOR_peak_37209 chr3 190096350 190096580 + 14.73818 NA Intergenic Intergenic -9196 NM_006580 10686 Hs.251391 NM_006580 HPRD:04906 CLDN16 HOMG3|PCLN1 claudin 16 protein-coding 13-PTNLD9-TUMOR_peak_29889 chr2 221525123 221525451 + 14.73818 NA Intergenic Intergenic -754001 NR_036228 100422959 NR_036228 miRBase:MI0015874 MIR4268 - microRNA 4268 ncRNA 13-PTNLD9-TUMOR_peak_7597 chr10 71142541 71142824 + 14.73818 NA intron (NM_033497, intron 13 of 20) intron (NM_033497, intron 13 of 20) 33992 NM_001057 6865 Hs.88372 NM_001057 HPRD:01207 TACR2 NK2R|NKNAR|SKR|TAC2R tachykinin receptor 2 protein-coding 13-PTNLD9-TUMOR_peak_21800 chr17 63359047 63359274 + 14.73818 NA Intergenic Intergenic 198580 NM_004655 8313 Hs.156527 NM_004655 HPRD:04935 AXIN2 AXIL|ODCRCS axin 2 protein-coding 13-PTNLD9-TUMOR_peak_34806 chr3 61880757 61880960 + 14.73818 NA intron (NM_002841, intron 2 of 29) intron (NM_002841, intron 2 of 29) 333615 NM_002841 5793 Hs.595541 NM_002841 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase, receptor type, G protein-coding 13-PTNLD9-TUMOR_peak_53650 chr9 76065995 76066293 + 14.73818 NA Intergenic MLT1J2|LTR|ERVL-MaLR 299363 NM_000700 301 Hs.494173 NM_000700 HPRD:01060 ANXA1 ANX1|LPC1 annexin A1 protein-coding 13-PTNLD9-TUMOR_peak_8211 chr10 104127923 104128127 + 14.73444 NA exon (NM_001199378, exon 22 of 40) exon (NM_001199378, exon 22 of 40) -25842 NM_001288724 4791 Hs.73090 NM_002502 HPRD:01239 NFKB2 CVID10|H2TF1|LYT-10|LYT10|NF-kB2|p105|p52 nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100) protein-coding 13-PTNLD9-TUMOR_peak_41723 chr5 110866047 110866210 + 14.73444 NA intron (NR_040093, intron 1 of 6) intron (NR_040093, intron 1 of 6) -17971 NM_139164 134429 Hs.93842 NM_139164 HPRD:06133 STARD4 - StAR-related lipid transfer (START) domain containing 4 protein-coding 13-PTNLD9-TUMOR_peak_6719 chr10 25052001 25052176 + 14.73444 NA Intergenic Helitron1Na_Mam|RC|Helitron -39491 NM_020824 57584 Hs.524195 NM_020824 HPRD:06445 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 13-PTNLD9-TUMOR_peak_38510 chr4 62070226 62070384 + 14.73444 NA Intergenic Intergenic -292534 NM_015236 23284 Hs.28391 NM_015236 HPRD:10055 LPHN3 CIRL3|LEC3 latrophilin 3 protein-coding 13-PTNLD9-TUMOR_peak_17271 chr15 50969347 50969545 + 14.73444 NA intron (NM_001301212, intron 1 of 38) MLT1A|LTR|ERVL-MaLR 9566 NM_017672 54822 Hs.512894 NM_017672 HPRD:10418 TRPM7 ALSPDC|CHAK|CHAK1|LTRPC7|LTrpC-7|TRP-PLIK transient receptor potential cation channel, subfamily M, member 7 protein-coding 13-PTNLD9-TUMOR_peak_13972 chr12 117925121 117925291 + 14.73444 NA intron (NM_173598, intron 14 of 19) intron (NM_173598, intron 14 of 19) -125599 NM_001204218 4842 Hs.654410 NM_000620 HPRD:01226 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 (neuronal) protein-coding 13-PTNLD9-TUMOR_peak_31663 chr20 55901747 55902153 + 14.73291 NA Intergenic Intergenic -2881 NM_012444 23626 Hs.159737 NM_012444 HPRD:09236 SPO11 CT35|SPATA43|TOPVIA SPO11 meiotic protein covalently bound to DSB protein-coding 13-PTNLD9-TUMOR_peak_7791 chr10 77118608 77119140 + 14.73248 NA intron (NR_038223, intron 2 of 2) intron (NR_038223, intron 2 of 2) -42412 NR_024421 100131213 Hs.534598 NR_024421 ZNF503-AS2 C10orf41|NCRNA00245 ZNF503 antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_1634 chr1 47022616 47022787 + 14.73248 NA TTS (NR_024176) TTS (NR_024176) -5814 NM_001097611 148930 Hs.350764 NM_182516 KNCN Kino|L5 kinocilin protein-coding 13-PTNLD9-TUMOR_peak_38526 chr4 66864343 66864600 + 14.73248 NA Intergenic L1PA2|LINE|L1 -328258 NM_001281767 2044 Hs.654492 NM_004439 HPRD:02474 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 13-PTNLD9-TUMOR_peak_6077 chr1 242108260 242108386 + 14.73248 NA Intergenic Intergenic -12746 NM_001290693 441925 Hs.731347 NM_001290693 BECN1P1 BECN1L1|BECN2 beclin 1, autophagy related, pseudogene 1 protein-coding 13-PTNLD9-TUMOR_peak_32789 chr22 20445226 20445589 + 14.72667 NA Intergenic AluJb|SINE|Alu 16379 NM_015672 85376 Hs.115429 NM_015672 ENSG00000196622 RIMBP3 RIM-BP3|RIM-BP3.1|RIM-BP3.A|RIMBP3.1|RIMBP3A RIMS binding protein 3 protein-coding 13-PTNLD9-TUMOR_peak_44839 chr6 36973890 36974214 + 14.72667 NA intron (NM_173558, intron 1 of 15) MER94|DNA|hAT-Blackjack 629 NM_173558 221472 Hs.509664 NM_173558 HPRD:05478 FGD2 ZFYVE4 FYVE, RhoGEF and PH domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_46724 chr7 2681159 2681416 + 14.72126 NA intron (NM_025250, intron 1 of 13) intron (NM_025250, intron 1 of 13) 9684 NM_025250 80727 Hs.440899 NM_025250 HPRD:12333 TTYH3 - tweety family member 3 protein-coding 13-PTNLD9-TUMOR_peak_15453 chr14 31665209 31665523 + 14.72126 NA intron (NM_015382, intron 2 of 42) AluSz|SINE|Alu 11363 NM_015382 25831 Hs.708017 NM_015382 HPRD:17098 HECTD1 EULIR HECT domain containing E3 ubiquitin protein ligase 1 protein-coding 13-PTNLD9-TUMOR_peak_52112 chr8 132300882 132301321 + 14.72126 NA Intergenic MER44D|DNA|TcMar-Tigger -248266 NM_001115 114 Hs.591859 NM_001115 HPRD:00051 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 (brain) protein-coding 13-PTNLD9-TUMOR_peak_53556 chr9 71795706 71795928 + 14.72126 NA intron (NM_201629, intron 1 of 20) intron (NM_201629, intron 1 of 20) 6846 NM_001170630 9414 Hs.50382 NM_004817 HPRD:06369 TJP2 C9DUPq21.11|DFNA51|DUP9q21.11|PFIC4|X104|ZO2 tight junction protein 2 protein-coding 13-PTNLD9-TUMOR_peak_14225 chr12 125122213 125122354 + 14.72126 NA Intergenic Intergenic -70273 NM_001206654 9612 Hs.137510 NM_006312 HPRD:02910 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 13-PTNLD9-TUMOR_peak_375 chr1 10570676 10570909 + 14.72126 NA intron (NM_004565, intron 2 of 8) intron (NM_004565, intron 2 of 8) 35789 NM_004565 5195 Hs.149983 NM_004565 HPRD:03477 PEX14 NAPP2|PBD13A|Pex14p|dJ734G22.2 peroxisomal biogenesis factor 14 protein-coding 13-PTNLD9-TUMOR_peak_47086 chr7 24865914 24866085 + 14.72126 NA intron (NR_104111, intron 15 of 21) intron (NR_104111, intron 15 of 21) 66241 NR_104111 26031 Hs.520259 NM_015550 HPRD:09474 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein-like 3 protein-coding 13-PTNLD9-TUMOR_peak_49296 chr7 137801000 137801160 + 14.72126 NA intron (NM_001190906, intron 7 of 7) intron (NM_001190906, intron 7 of 7) -7424 NR_039678 100616226 NR_039678 miRBase:MI0016819 MIR4468 - microRNA 4468 ncRNA 13-PTNLD9-TUMOR_peak_4824 chr1 192508906 192509156 + 14.72126 NA Intergenic Intergenic -35826 NM_002922 5996 Hs.75256 NM_002922 HPRD:15968 RGS1 1R20|BL34|HEL-S-87|IER1|IR20 regulator of G-protein signaling 1 protein-coding 13-PTNLD9-TUMOR_peak_16287 chr14 75696811 75697188 + 14.72126 NA Intergenic Intergenic -48482 NM_005252 2353 Hs.25647 NM_005252 HPRD:01275 FOS AP-1|C-FOS|p55 FBJ murine osteosarcoma viral oncogene homolog protein-coding 13-PTNLD9-TUMOR_peak_34214 chr3 33138549 33138840 + 14.72126 NA promoter-TSS (NM_001135602) promoter-TSS (NM_001135602) 0 NM_001135602 2720 Hs.443031 NM_000404 HPRD:01975 GLB1 EBP|ELNR1|MPS4B galactosidase, beta 1 protein-coding 13-PTNLD9-TUMOR_peak_7608 chr10 71267629 71267840 + 14.71903 NA TTS (NM_012339) TTS (NM_012339) 56508 NM_012339 23555 Hs.499941 NM_012339 HPRD:15511 TSPAN15 2700063A19Rik|NET-7|NET7|TM4SF15 tetraspanin 15 protein-coding 13-PTNLD9-TUMOR_peak_46060 chr6 132036404 132037031 + 14.71903 NA intron (NM_005021, intron 15 of 24) L1PA15-16|LINE|L1 -4560 NM_001145659 643854 Hs.632613 NM_001145659 ENSG00000236761 CTAGE9 - CTAGE family, member 9 protein-coding 13-PTNLD9-TUMOR_peak_9205 chr11 17003216 17003566 + 14.71903 NA intron (NM_175058, intron 3 of 22) intron (NM_175058, intron 3 of 22) 32572 NM_175058 144100 Hs.12332 NM_175058 HPRD:15142 PLEKHA7 - pleckstrin homology domain containing, family A member 7 protein-coding 13-PTNLD9-TUMOR_peak_10315 chr11 66510719 66511069 + 14.71903 NA Intergenic Intergenic -1313 NR_048553 79703 Hs.292088 NM_024650 HPRD:07993 C11orf80 - chromosome 11 open reading frame 80 protein-coding 13-PTNLD9-TUMOR_peak_48617 chr7 101707168 101707436 + 14.71293 NA intron (NM_181552, intron 3 of 23) intron (NM_181552, intron 3 of 23) -221051 NM_020979 10603 Hs.489448 NM_020979 SH2B2 APS SH2B adaptor protein 2 protein-coding 13-PTNLD9-TUMOR_peak_6142 chr1 245422076 245422213 + 14.71293 NA intron (NM_018012, intron 2 of 14) intron (NM_018012, intron 2 of 14) 103857 NM_018012 55083 Hs.368096 NM_018012 ENSG00000162849 KIF26B - kinesin family member 26B protein-coding 13-PTNLD9-TUMOR_peak_16858 chr15 28340039 28340201 + 14.70597 NA intron (NM_001300984, intron 1 of 22) CpG 4338 NM_001300984 4948 Hs.654411 NM_000275 HPRD:01945 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 oculocutaneous albinism II protein-coding 13-PTNLD9-TUMOR_peak_42808 chr5 157941666 157941850 + 14.70066 NA Intergenic Intergenic -104977 NR_109888 101927697 Hs.483960 NR_109888 LOC101927697 - uncharacterized LOC101927697 ncRNA 13-PTNLD9-TUMOR_peak_36565 chr3 159175877 159176147 + 14.70066 NA intron (NM_001197108, intron 1 of 6) intron (NM_001197108, intron 1 of 6) 175577 NR_037483 100500803 NR_037483 MIR3919 - microRNA 3919 ncRNA 13-PTNLD9-TUMOR_peak_53824 chr9 86986775 86987045 + 14.70066 NA Intergenic Intergenic -3497 NM_022127 64078 Hs.535966 NM_022127 HPRD:12200 SLC28A3 CNT3 solute carrier family 28 (concentrative nucleoside transporter), member 3 protein-coding 13-PTNLD9-TUMOR_peak_51247 chr8 86848262 86848560 + 14.70066 NA Intergenic Intergenic -8240 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene) pseudo 13-PTNLD9-TUMOR_peak_31602 chr20 53127155 53127333 + 14.70066 NA intron (NM_018431, intron 1 of 7) intron (NM_018431, intron 1 of 7) 34987 NM_177959 55816 Hs.473133 NM_018431 HPRD:16317 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 13-PTNLD9-TUMOR_peak_14496 chr13 29714430 29714938 + 14.70066 NA intron (NM_001033602, intron 3 of 13) intron (NM_001033602, intron 3 of 13) 115936 NM_001033602 23281 Hs.22287 NM_015233 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated tumor suppressor candidate 2 protein-coding 13-PTNLD9-TUMOR_peak_34753 chr3 57938005 57938232 + 14.70066 NA Intergenic MLT1C|LTR|ERVL-MaLR -56009 NM_001457 2317 Hs.476448 NM_001457 HPRD:04543 FLNB ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP filamin B, beta protein-coding 13-PTNLD9-TUMOR_peak_45130 chr6 44030660 44030779 + 14.68875 NA Intergenic Intergenic 62382 NM_153246 221416 Hs.531926 NM_153246 HPRD:14640 C6orf223 - chromosome 6 open reading frame 223 protein-coding 13-PTNLD9-TUMOR_peak_22634 chr18 12308506 12308917 + 14.68105 NA exon (NM_032525, exon 2 of 4) exon (NM_032525, exon 2 of 4) 454 NM_032525 84617 Hs.193491 NM_032525 HPRD:11349 TUBB6 HsT1601|TUBB-5 tubulin, beta 6 class V protein-coding 13-PTNLD9-TUMOR_peak_16890 chr15 30028962 30029124 + 14.68105 NA intron (NM_001301025, intron 12 of 28) LTR87|LTR|ERVL? 84708 NM_001301026 7082 Hs.743990 NM_003257 HPRD:03002 TJP1 ZO-1 tight junction protein 1 protein-coding 13-PTNLD9-TUMOR_peak_39507 chr4 143300524 143300782 + 14.68105 NA intron (NM_001101669, intron 7 of 25) intron (NM_001101669, intron 7 of 25) 466951 NM_003866 8821 Hs.531403 NM_003866 HPRD:06322 INPP4B - inositol polyphosphate-4-phosphatase, type II, 105kDa protein-coding 13-PTNLD9-TUMOR_peak_47004 chr7 20654916 20655183 + 14.68105 NA promoter-TSS (NM_001163941) promoter-TSS (NM_001163941) -196 NM_001163941 340273 Hs.404102 NM_178559 ENSG00000004846 ABCB5 ABCB5alpha|ABCB5beta|EST422562 ATP-binding cassette, sub-family B (MDR/TAP), member 5 protein-coding 13-PTNLD9-TUMOR_peak_44820 chr6 36612459 36612622 + 14.68105 NA Intergenic Intergenic -22251 NR_037491 100500885 NR_037491 miRBase:MI0016433 MIR3925 - microRNA 3925 ncRNA 13-PTNLD9-TUMOR_peak_25024 chr19 41551152 41551338 + 14.67692 NA Intergenic L2b|LINE|L2 -43111 NM_000766 1553 Hs.567252 NM_000766 HPRD:07454 CYP2A13 CPAD|CYP2A|CYPIIA13 cytochrome P450, family 2, subfamily A, polypeptide 13 protein-coding 13-PTNLD9-TUMOR_peak_17867 chr15 85131355 85131515 + 14.67692 NA Intergenic Intergenic -12814 NM_181877 54993 Hs.594023 NM_017894 HPRD:15898 ZSCAN2 ZFP29|ZNF854 zinc finger and SCAN domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_52398 chr8 143869789 143869995 + 14.67692 NA Intergenic Intergenic -1884 NM_003695 8581 Hs.415762 NM_003695 HPRD:09370 LY6D E48|Ly-6D lymphocyte antigen 6 complex, locus D protein-coding 13-PTNLD9-TUMOR_peak_29065 chr2 172204160 172204462 + 14.67692 NA intron (NM_024770, intron 3 of 9) intron (NM_024770, intron 3 of 9) -86450 NM_025000 80067 Hs.659439 NM_025000 HPRD:08579 DCAF17 C2orf37 DDB1 and CUL4 associated factor 17 protein-coding 13-PTNLD9-TUMOR_peak_9537 chr11 35358813 35359005 + 14.67692 NA intron (NM_001195728, intron 1 of 11) intron (NM_001195728, intron 1 of 11) 82196 NM_004171 6506 Hs.502338 NM_004171 HPRD:02625 SLC1A2 EAAT2|GLT-1 solute carrier family 1 (glial high affinity glutamate transporter), member 2 protein-coding 13-PTNLD9-TUMOR_peak_35250 chr3 107150688 107150870 + 14.67576 NA intron (NR_110039, intron 1 of 2) CpG 1002 NR_110039 101929607 Hs.252565 NR_110039 LOC101929607 - uncharacterized LOC101929607 ncRNA 13-PTNLD9-TUMOR_peak_29986 chr2 231555798 231556099 + 14.67576 NA non-coding (NR_040038, exon 4 of 4) non-coding (NR_040038, exon 4 of 4) 9296 NR_040038 151475 Hs.528154 NR_040038 ENSG00000226125 LOC151475 - uncharacterized LOC151475 ncRNA 13-PTNLD9-TUMOR_peak_2145 chr1 68297777 68298049 + 14.67513 NA promoter-TSS (NR_040077) promoter-TSS (NR_040077) -58 NR_040077 100289178 Hs.677603 NR_040077 ENSG00000232284 GNG12-AS1 - GNG12 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_10251 chr11 65560669 65560907 + 14.67513 NA intron (NM_004561, intron 1 of 3) intron (NM_004561, intron 1 of 3) -2449 NR_108085 101927828 Hs.666246 NR_108085 OVOL1-AS1 - OVOL1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_50343 chr8 23278836 23279205 + 14.67513 NA Intergenic HERVK3-int|LTR|ERVK -17298 NM_002318 4017 Hs.626637 NM_002318 HPRD:09446 LOXL2 LOR2|WS9-14 lysyl oxidase-like 2 protein-coding 13-PTNLD9-TUMOR_peak_21961 chr17 73007199 73007378 + 14.67513 NA Intergenic Intergenic -1492 NM_001545 3396 Hs.407955 NM_001545 HPRD:04299 ICT1 DS-1|DS1|MRP-L58 immature colon carcinoma transcript 1 protein-coding 13-PTNLD9-TUMOR_peak_36243 chr3 142719432 142719624 + 14.67346 NA promoter-TSS (NM_001080415) promoter-TSS (NM_001080415) 781 NR_034032 100289361 Hs.599649 NR_034032 ENSG00000268129 LOC100289361 - uncharacterized LOC100289361 ncRNA 13-PTNLD9-TUMOR_peak_7134 chr10 43133979 43134233 + 14.67346 NA promoter-TSS (NM_006955) promoter-TSS (NM_006955) -114 NM_006955 7582 Hs.732284 NM_006955 HPRD:01912 ZNF33B KOX2|KOX31|ZNF11B zinc finger protein 33B protein-coding 13-PTNLD9-TUMOR_peak_30047 chr2 234615426 234615599 + 14.66680 NA intron (NM_205862, intron 2 of 5) intron (NM_205862, intron 2 of 5) -6126 NM_019078 54579 Hs.554822 NM_019078 HPRD:07335 UGT1A5 UDPGT|UDPGT 1-5|UGT1E UDP glucuronosyltransferase 1 family, polypeptide A5 protein-coding 13-PTNLD9-TUMOR_peak_17778 chr15 81248229 81248449 + 14.66680 NA Intergenic Intergenic 33866 NM_015154 23184 Hs.578450 NM_015154 HPRD:12129 MESDC2 BOCA|MESD mesoderm development candidate 2 protein-coding 13-PTNLD9-TUMOR_peak_26565 chr2 36616385 36616516 + 14.66680 NA intron (NM_016441, intron 1 of 16) intron (NM_016441, intron 1 of 16) 33080 NM_016441 51232 Hs.699247 NM_016441 HPRD:08392 CRIM1 CRIM-1|S52 cysteine rich transmembrane BMP regulator 1 (chordin-like) protein-coding 13-PTNLD9-TUMOR_peak_34309 chr3 40162394 40162569 + 14.66680 NA intron (NM_001284426, intron 1 of 14) intron (NM_001284426, intron 1 of 14) 20979 NM_001284426 25924 Hs.594535 NM_015460 HPRD:14796 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 13-PTNLD9-TUMOR_peak_26751 chr2 44327682 44327862 + 14.66680 NA Intergenic Intergenic -68170 NM_177969 5495 Hs.416769 NM_002706 HPRD:04796 PPM1B PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX protein phosphatase, Mg2+/Mn2+ dependent, 1B protein-coding 13-PTNLD9-TUMOR_peak_31280 chr20 46061396 46061582 + 14.66680 NA Intergenic AluSz|SINE|Alu -69112 NM_001174087 8202 Hs.592142 NM_006534 HPRD:03570 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 13-PTNLD9-TUMOR_peak_7850 chr10 80901929 80902195 + 14.66680 NA intron (NM_020338, intron 3 of 24) L2a|LINE|L2 73270 NM_020338 57178 Hs.193118 NM_020338 HPRD:12115 ZMIZ1 MIZ|RAI17|TRAFIP10|ZIMP10|hZIMP10 zinc finger, MIZ-type containing 1 protein-coding 13-PTNLD9-TUMOR_peak_19668 chr16 69958800 69959016 + 14.66680 NA promoter-TSS (NM_199424) promoter-TSS (NM_199424) 22 NM_199424 11060 Hs.408458 NM_007014 HPRD:03812 WWP2 AIP2|WWp2-like WW domain containing E3 ubiquitin protein ligase 2 protein-coding 13-PTNLD9-TUMOR_peak_45251 chr6 47699307 47699422 + 14.66680 NA Intergenic Intergenic 33075 NM_153838 221393 Hs.150131 NM_153838 HPRD:17057 GPR115 PGR18 G protein-coupled receptor 115 protein-coding 13-PTNLD9-TUMOR_peak_42181 chr5 135423763 135423916 + 14.66680 NA Intergenic Intergenic -7553 NR_030583 100126299 NR_030583 ENSG00000270123 VTRNA2-1 CBL-3|CBL3|MIR886|MIRN886|VTRNA2|hsa-mir-886|hvg-5|nc886 vault RNA 2-1 ncRNA 13-PTNLD9-TUMOR_peak_31830 chr20 62497182 62497373 + 14.65789 NA intron (NM_001243892, intron 1 of 5) intron (NM_001243892, intron 1 of 5) 696 NM_001243892 7165 Hs.473296 NM_003288 HPRD:11947 TPD52L2 D54 tumor protein D52-like 2 protein-coding 13-PTNLD9-TUMOR_peak_3731 chr1 153585449 153585647 + 14.65502 NA promoter-TSS (NM_080388) promoter-TSS (NM_080388) -34 NM_080388 140576 Hs.515714 NM_080388 HPRD:11529 S100A16 DT1P1A7|S100F S100 calcium binding protein A16 protein-coding 13-PTNLD9-TUMOR_peak_52522 chr8 145638921 145639056 + 14.65157 NA promoter-TSS (NM_001280557) promoter-TSS (NM_001280557) -13 NM_001280557 55630 Hs.521934 NM_017767 HPRD:06137 SLC39A4 AEZ|AWMS2|ZIP4 solute carrier family 39 (zinc transporter), member 4 protein-coding 13-PTNLD9-TUMOR_peak_11742 chr12 68775 69053 + 14.64704 NA non-coding (NR_026823, exon 3 of 3) non-coding (NR_026823, exon 3 of 3) 1307 NR_026823 677784 Hs.722487 NR_026823 ENSG00000206114 FAM138D F379 family with sequence similarity 138, member D ncRNA 13-PTNLD9-TUMOR_peak_41845 chr5 119790175 119790345 + 14.64509 NA Intergenic Intergenic -9713 NM_016644 51334 Hs.157461 NM_016644 HPRD:14239 PRR16 DSC54|LARGEN proline rich 16 protein-coding 13-PTNLD9-TUMOR_peak_31313 chr20 46768019 46768469 + 14.64509 NA Intergenic MER41B|LTR|ERV1 -149383 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 13-PTNLD9-TUMOR_peak_40871 chr5 54185758 54185947 + 14.64509 NA Intergenic Intergenic 95562 NM_007036 11082 Hs.129944 NM_007036 HPRD:03310 ESM1 endocan endothelial cell-specific molecule 1 protein-coding 13-PTNLD9-TUMOR_peak_32316 chr21 39992071 39992462 + 14.64509 NA intron (NR_111949, intron 1 of 4) intron (NR_111949, intron 1 of 4) -35397 NM_001243429 2078 Hs.473819 NM_004449 HPRD:01298 ERG erg-3|p55 v-ets avian erythroblastosis virus E26 oncogene homolog protein-coding 13-PTNLD9-TUMOR_peak_445 chr1 12221988 12222171 + 14.64509 NA Intergenic Intergenic -4921 NR_107000 102465836 NR_107000 MIR7846 hsa-mir-7846 microRNA 7846 ncRNA 13-PTNLD9-TUMOR_peak_42755 chr5 154572587 154572950 + 14.64509 NA Intergenic LTR81B|LTR|Gypsy 179508 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 13-PTNLD9-TUMOR_peak_23017 chr18 42320097 42320292 + 14.64509 NA intron (NM_001130110, intron 2 of 3) intron (NM_001130110, intron 2 of 3) 59331 NM_015559 26040 Hs.435458 NM_015559 HPRD:10224 SETBP1 SEB SET binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_4949 chr1 201353185 201353517 + 14.64091 NA intron (NM_005558, intron 5 of 9) L2c|LINE|L2 -6523 NM_001001432 7139 Hs.533613 NM_000364 HPRD:01844 TNNT2 CMD1D|CMH2|CMPD2|LVNC6|RCM3|TnTC|cTnT troponin T type 2 (cardiac) protein-coding 13-PTNLD9-TUMOR_peak_2789 chr1 110336544 110336769 + 14.64091 NA Intergenic Intergenic -30012 NM_024526 79574 Hs.485352 NM_024526 HPRD:13277 EPS8L3 EPS8R3 EPS8-like 3 protein-coding 13-PTNLD9-TUMOR_peak_45706 chr6 90008410 90008573 + 14.64091 NA intron (NM_002043, intron 2 of 8) MLT1A0|LTR|ERVL-MaLR 16527 NM_002043 2570 Hs.719891 NM_002043 HPRD:15922 GABRR2 - gamma-aminobutyric acid (GABA) A receptor, rho 2 protein-coding 13-PTNLD9-TUMOR_peak_33873 chr3 14185392 14185730 + 14.63982 NA TTS (NM_024334) TTS (NM_024334) 19121 NM_024334 79188 Hs.517817 NM_024334 HPRD:15541 TMEM43 ARVC5|ARVD5|EDMD7|LUMA transmembrane protein 43 protein-coding 13-PTNLD9-TUMOR_peak_4327 chr1 168194705 168194935 + 14.63982 NA promoter-TSS (NM_199344) promoter-TSS (NM_199344) -435 NM_199344 375035 Hs.645435 NM_199344 SFT2D2 UNQ512|dJ747L4.C1.2 SFT2 domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_49347 chr7 139357464 139357746 + 14.63226 NA intron (NM_022740, intron 2 of 14) intron (NM_022740, intron 2 of 14) 120088 NM_022740 28996 Hs.731417 NM_022740 HPRD:06039 HIPK2 PRO0593 homeodomain interacting protein kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_37924 chr4 9022638 9022878 + 14.63226 NA Intergenic Intergenic 71281 NM_001040071 650293 Hs.535167 NM_001040071 LOC650293 - seven transmembrane helix receptor protein-coding 13-PTNLD9-TUMOR_peak_32679 chr22 18431981 18432207 + 14.63096 NA intron (NM_015241, intron 1 of 31) MIRb|SINE|MIR 31633 NR_030378 693233 NR_030378 miRBase:MI0003663 MIR648 MIRN648|hsa-mir-648 microRNA 648 ncRNA 13-PTNLD9-TUMOR_peak_54811 chr9 130461598 130461847 + 14.63096 NA Intergenic CpG -7549 NM_001012502 286207 Hs.652519 NM_001012502 HPRD:16673 C9orf117 - chromosome 9 open reading frame 117 protein-coding 13-PTNLD9-TUMOR_peak_17059 chr15 39871973 39872147 + 14.63096 NA Intergenic Intergenic -1220 NM_003246 7057 Hs.164226 NM_003246 THBS1 THBS|THBS-1|TSP|TSP-1|TSP1 thrombospondin 1 protein-coding 13-PTNLD9-TUMOR_peak_31256 chr20 45375743 45375916 + 14.63096 NA Intergenic L2a|LINE|L2 37550 NM_030777 81031 Hs.305971 NM_030777 HPRD:05851 SLC2A10 ATS|GLUT10 solute carrier family 2 (facilitated glucose transporter), member 10 protein-coding 13-PTNLD9-TUMOR_peak_27630 chr2 92008132 92008312 + 14.63096 NA Intergenic HERVL-int|LTR|ERVL 44854 NR_003503 645367 Hs.650223 NR_003503 GGT8P GGT1P1 gamma-glutamyltransferase 8 pseudogene pseudo 13-PTNLD9-TUMOR_peak_36435 chr3 152878289 152878699 + 14.63037 NA Intergenic CpG -1507 NM_002886 5912 Hs.98643 NM_002886 RAP2B - RAP2B, member of RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_10576 chr11 72951164 72951562 + 14.62829 NA 3' UTR (NM_176072, exon 3 of 3) 3' UTR (NM_176072, exon 3 of 3) 21861 NM_176071 5029 Hs.339 NM_002564 HPRD:02499 P2RY2 HP2U|P2RU1|P2U|P2U1|P2UR|P2Y2|P2Y2R purinergic receptor P2Y, G-protein coupled, 2 protein-coding 13-PTNLD9-TUMOR_peak_971 chr1 32309217 32309408 + 14.62829 NA Intergenic LTR88b|LTR|Gypsy? -27660 NM_144569 90853 Hs.62604 NM_144569 HPRD:08057 SPOCD1 PPP1R146 SPOC domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_35644 chr3 124499231 124499407 + 14.62829 NA intron (NM_002213, intron 10 of 14) intron (NM_002213, intron 10 of 14) 50106 NR_033434 7372 Hs.2057 NM_000373 UMPS OPRT uridine monophosphate synthetase protein-coding 13-PTNLD9-TUMOR_peak_52565 chr8 146276359 146276695 + 14.62821 NA Intergenic AluY|SINE|Alu -1297 NM_023080 65265 Hs.169615 NM_023080 HPRD:07951 C8orf33 - chromosome 8 open reading frame 33 protein-coding 13-PTNLD9-TUMOR_peak_31179 chr20 43970998 43971201 + 14.61913 NA intron (NM_002999, intron 1 of 4) intron (NM_002999, intron 1 of 4) 5965 NM_002999 6385 Hs.632267 NM_002999 HPRD:08366 SDC4 SYND4 syndecan 4 protein-coding 13-PTNLD9-TUMOR_peak_34678 chr3 53143354 53143566 + 14.61612 NA intron (NM_052859, intron 7 of 12) L2c|LINE|L2 21010 NM_052859 91869 Hs.631910 NM_052859 HPRD:15239 RFT1 CDG1N RFT1 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_13560 chr12 98869207 98869395 + 14.61612 NA Intergenic Intergenic -18378 NR_033801 121456 Hs.620643 NR_033801 ENSG00000227825 SLC9A7P1 - solute carrier family 9, subfamily A (NHE7, cation proton antiporter 7), member 7 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_45112 chr6 43855215 43855379 + 14.61612 NA Intergenic MamSINE1|SINE|tRNA -3468 NR_024478 100132354 Hs.376232 NR_024478 LINC01512 - long intergenic non-protein coding RNA 1512 ncRNA 13-PTNLD9-TUMOR_peak_42855 chr5 159658136 159658455 + 14.61612 NA intron (NM_001130958, intron 4 of 6) MIR3|SINE|MIR 1858 NM_001445 2172 Hs.519719 NM_001445 HPRD:02689 FABP6 I-15P|I-BABP|I-BALB|I-BAP|ILBP|ILBP3|ILLBP fatty acid binding protein 6, ileal protein-coding 13-PTNLD9-TUMOR_peak_3661 chr1 151996838 151997061 + 14.61612 NA Intergenic Intergenic 6195 NR_103561 441908 Hs.656557 NR_103561 NBPF18P - neuroblastoma breakpoint family, member 18, pseudogene pseudo 13-PTNLD9-TUMOR_peak_4496 chr1 176502275 176502504 + 14.61612 NA intron (NM_021936, intron 1 of 4) intron (NM_021936, intron 1 of 4) 70082 NM_021936 60676 Hs.187284 NM_020318 HPRD:10156 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 13-PTNLD9-TUMOR_peak_48369 chr7 95714629 95714746 + 14.61612 NA intron (NM_001278422, intron 15 of 15) intron (NM_001278422, intron 15 of 15) 134381 NR_030322 693176 NR_030322 MIR591 MIRN591|hsa-mir-591 microRNA 591 ncRNA 13-PTNLD9-TUMOR_peak_3422 chr1 147930677 147930855 + 14.61205 NA intron (NR_102404, intron 17 of 18).2 intron (NR_102404, intron 17 of 18).2 24653 NM_001135789 653598 Hs.534674 NM_001135789 ENSG00000198161 PPIAL4C COAS-2 peptidylprolyl isomerase A (cyclophilin A)-like 4C protein-coding 13-PTNLD9-TUMOR_peak_27994 chr2 110655375 110655589 + 14.60971 NA promoter-TSS (NR_038099) promoter-TSS (NR_038099) -527 NR_027467 96626 Hs.535619 NM_033514 HPRD:17277 LIMS3 PINCH-3 LIM and senescent cell antigen-like domains 3 protein-coding 13-PTNLD9-TUMOR_peak_4092 chr1 160188786 160189076 + 14.60694 NA intron (NR_028103, intron 11 of 13) intron (NR_028103, intron 11 of 13) -10272 NR_123725 729867 Hs.674191 NR_123725 ENSG00000227741 LOC729867 - uncharacterized LOC729867 ncRNA 13-PTNLD9-TUMOR_peak_10263 chr11 65670710 65670896 + 14.60106 NA Intergenic Intergenic -2806 NM_005438 8061 Hs.283565 NM_005438 HPRD:00643 FOSL1 FRA|FRA1|fra-1 FOS-like antigen 1 protein-coding 13-PTNLD9-TUMOR_peak_47978 chr7 74561149 74561282 + 14.60106 NA intron (NM_001003795, intron 15 of 15) intron (NM_001003795, intron 15 of 15) 26587 NR_003187 654817 Hs.647047 NR_003187 HPRD:01990 NCF1C SH3PXD1C neutrophil cytosolic factor 1C pseudogene pseudo 13-PTNLD9-TUMOR_peak_8615 chr10 130674351 130674564 + 14.59861 NA Intergenic Arthur1|DNA|hAT-Tip100 590243 NR_120619 101927381 Hs.523342 NR_120619 LINC01163 TCONS_00017722 long intergenic non-protein coding RNA 1163 ncRNA 13-PTNLD9-TUMOR_peak_50125 chr8 13224316 13224535 + 14.59861 NA intron (NM_182643, intron 4 of 17) intron (NM_182643, intron 4 of 17) 148004 NM_024767 10395 Hs.134296 NM_006094 HPRD:05035 DLC1 ARHGAP7|HP|STARD12|p122-RhoGAP DLC1 Rho GTPase activating protein protein-coding 13-PTNLD9-TUMOR_peak_15874 chr14 57954596 57954813 + 14.59861 NA intron (NM_001283056, intron 2 of 6) intron (NM_001283056, intron 2 of 6) 5877 NM_001283057 55195 Hs.659706 NM_018168 HPRD:12628 C14orf105 - chromosome 14 open reading frame 105 protein-coding 13-PTNLD9-TUMOR_peak_29506 chr2 201320309 201320513 + 14.59861 NA intron (NM_001282735, intron 8 of 12) intron (NM_001282735, intron 8 of 12) 54381 NM_152387 130535 Hs.605775 NM_152387 HPRD:08098 KCTD18 6530404F10Rik potassium channel tetramerization domain containing 18 protein-coding 13-PTNLD9-TUMOR_peak_6334 chr10 4285961 4286140 + 14.59861 NA promoter-TSS (NR_108040) promoter-TSS (NR_108040) 54 NR_108040 100652988 Hs.433011 NR_108040 LINC00702 - long intergenic non-protein coding RNA 702 ncRNA 13-PTNLD9-TUMOR_peak_50926 chr8 53013448 53013837 + 14.59861 NA Intergenic Intergenic -201896 NM_001286783 115294 Hs.671268 NM_052937 HPRD:08313 PCMTD1 - protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_7152 chr10 43782844 43783025 + 14.59861 NA Intergenic Intergenic -20567 NM_145313 221002 Hs.125293 NM_145313 HPRD:15211 RASGEF1A CG4853 RasGEF domain family, member 1A protein-coding 13-PTNLD9-TUMOR_peak_9039 chr11 10654908 10655091 + 14.59861 NA intron (NM_001100167, intron 3 of 20) intron (NM_001100167, intron 3 of 20) 18849 NM_001098579 10335 Hs.501898 NM_130385 HPRD:05242 MRVI1 IRAG|JAW1L murine retrovirus integration site 1 homolog protein-coding 13-PTNLD9-TUMOR_peak_45915 chr6 112274028 112274331 + 14.58995 NA Intergenic Intergenic -79524 NM_002037 2534 Hs.390567 NM_002037 HPRD:00655 FYN SLK|SYN|p59-FYN FYN proto-oncogene, Src family tyrosine kinase protein-coding 13-PTNLD9-TUMOR_peak_17895 chr15 85887845 85888055 + 14.58995 NA Intergenic Intergenic -35897 NM_007200 11214 Hs.459211 NM_006738 HPRD:05253 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A kinase (PRKA) anchor protein 13 protein-coding 13-PTNLD9-TUMOR_peak_52018 chr8 129213891 129214408 + 14.58995 NA Intergenic Intergenic 51787 NR_031613 100302281 NR_031613 miRBase:MI0006341 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 13-PTNLD9-TUMOR_peak_7752 chr10 75426054 75426246 + 14.58995 NA Intergenic Intergenic -10287 NM_001114133 79933 Hs.645273 NM_024875 HPRD:15457 SYNPO2L - synaptopodin 2-like protein-coding 13-PTNLD9-TUMOR_peak_48465 chr7 99276742 99276901 + 14.58995 NA intron (NM_001291829, intron 1 of 13) intron (NM_001291829, intron 1 of 13) 828 NM_000777 1577 Hs.571258 NM_000777 HPRD:05617 CYP3A5 CP35|CYPIIIA5|P450PCN3|PCN3 cytochrome P450, family 3, subfamily A, polypeptide 5 protein-coding 13-PTNLD9-TUMOR_peak_6595 chr10 17685474 17685719 + 14.58968 NA promoter-TSS (NR_037774) promoter-TSS (NR_037774) 321 NR_110370 102723166 Hs.547311 NR_110370 STAM-AS1 locus3182 STAM antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_38954 chr4 100736844 100737154 + 14.58968 NA promoter-TSS (NM_014395) promoter-TSS (NM_014395) -982 NM_014395 27071 Hs.436271 NM_014395 HPRD:05773 DAPP1 BAM32 dual adaptor of phosphotyrosine and 3-phosphoinositides protein-coding 13-PTNLD9-TUMOR_peak_19972 chr16 85339806 85340041 + 14.58968 NA promoter-TSS (NR_049816) promoter-TSS (NR_049816) 8 NR_049816 100847022 NR_049816 miRBase:MI0017982 MIR5093 - microRNA 5093 ncRNA 13-PTNLD9-TUMOR_peak_26594 chr2 37615299 37615559 + 14.58968 NA Intergenic Intergenic 43676 NM_012413 25797 Hs.79033 NM_012413 HPRD:06140 QPCT GCT|QC|sQC glutaminyl-peptide cyclotransferase protein-coding 13-PTNLD9-TUMOR_peak_50651 chr8 38384906 38385115 + 14.58968 NA intron (NM_207412, intron 1 of 2) intron (NM_207412, intron 1 of 2) 1170 NM_207412 389649 Hs.546586 NM_207412 HPRD:13474 C8orf86 - chromosome 8 open reading frame 86 protein-coding 13-PTNLD9-TUMOR_peak_15305 chr14 23276746 23276980 + 14.58968 NA intron (NM_001126105, intron 3 of 10) L2c|LINE|L2 8238 NR_040448 9056 Hs.513147 NM_003982 HPRD:04667 SLC7A7 LAT3|LPI|MOP-2|Y+LAT1|y+LAT-1 solute carrier family 7 (amino acid transporter light chain, y+L system), member 7 protein-coding 13-PTNLD9-TUMOR_peak_36182 chr3 140911209 140911375 + 14.58968 NA Intergenic Intergenic -39375 NM_152282 92370 Hs.657887 NM_152282 HPRD:08675 PXYLP1 ACPL2|HEL124|XYLP 2-phosphoxylose phosphatase 1 protein-coding 13-PTNLD9-TUMOR_peak_15373 chr14 24649338 24649517 + 14.58968 NA TTS (NM_024658) TTS (NM_024658) 8193 NM_005132 9985 Hs.419259 NM_005132 HPRD:09739 REC8 HR21spB|REC8L1|Rec8p REC8 meiotic recombination protein protein-coding 13-PTNLD9-TUMOR_peak_35780 chr3 127429595 127429901 + 14.58177 NA intron (NM_001003794, intron 5 of 7) intron (NM_001003794, intron 5 of 7) 37967 NR_033429 80325 Hs.107812 NM_032548 HPRD:10513 ABTB1 BPOZ|BTB3|BTBD21|EF1ABP ankyrin repeat and BTB (POZ) domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_21916 chr17 71289654 71289962 + 14.58177 NA intron (NM_012121, intron 1 of 1) intron (NM_012121, intron 1 of 1) 18335 NM_012121 23580 Hs.3903 NM_012121 HPRD:08383 CDC42EP4 BORG4|CEP4|KAIA1777 CDC42 effector protein (Rho GTPase binding) 4 protein-coding 13-PTNLD9-TUMOR_peak_30943 chr20 35510344 35510563 + 14.58177 NA intron (NM_080628, intron 4 of 6) intron (NM_080628, intron 4 of 6) 5883 NM_080628 140711 Hs.472630 NM_080628 HPRD:18554 TLDC2 C20orf118|dJ132F21.2 TBC/LysM-associated domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_2284 chr1 83031350 83031511 + 14.58177 NA Intergenic Intergenic 419175 NR_110632 101927498 NR_110632 ENSG00000236268 LINC01361 - long intergenic non-protein coding RNA 1361 ncRNA 13-PTNLD9-TUMOR_peak_46411 chr6 158447561 158447849 + 14.58098 NA intron (NM_003898, intron 2 of 26) intron (NM_003898, intron 2 of 26) 9625 NM_001178088 8871 Hs.434494 NM_003898 HPRD:10259 SYNJ2 INPP5H synaptojanin 2 protein-coding 13-PTNLD9-TUMOR_peak_31716 chr20 57482021 57482170 + 14.58098 NA intron (NM_001077490, intron 6 of 12) intron (NM_001077490, intron 6 of 12) 15669 NM_080426 2778 Hs.125898 NM_000516 HPRD:00761 GNAS AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PHP1A|PHP1B|PHP1C|POH GNAS complex locus protein-coding 13-PTNLD9-TUMOR_peak_56716 chrX 153670752 153670895 + 14.58098 NA intron (NM_001493, intron 10 of 10) intron (NM_001493, intron 10 of 10) -1650 NM_004699 9130 Hs.54277 NM_004699 HPRD:02349 FAM50A 9F|DXS9928E|HXC-26|HXC26|XAP5 family with sequence similarity 50, member A protein-coding 13-PTNLD9-TUMOR_peak_41652 chr5 102957313 102957533 + 14.58098 NA Intergenic Intergenic -58921 NM_031438 83594 Hs.434289 NM_031438 HPRD:10123 NUDT12 - nudix (nucleoside diphosphate linked moiety X)-type motif 12 protein-coding 13-PTNLD9-TUMOR_peak_2756 chr1 109800080 109800454 + 14.57874 NA intron (NM_001408, intron 1 of 33) intron (NM_001408, intron 1 of 33) 7626 NM_001408 1952 Hs.57652 NM_001408 HPRD:05040 CELSR2 CDHF10|EGFL2|Flamingo1|MEGF3 cadherin, EGF LAG seven-pass G-type receptor 2 protein-coding 13-PTNLD9-TUMOR_peak_27514 chr2 87782613 87782935 + 14.57757 NA intron (NR_024204, intron 3 of 3) intron (NR_024204, intron 3 of 3) 27800 NR_024206 112597 Hs.652166 NM_052871 HPRD:14654 LINC00152 C2orf59|NCRNA00152 long intergenic non-protein coding RNA 152 ncRNA 13-PTNLD9-TUMOR_peak_49154 chr7 132075478 132075810 + 14.57757 NA intron (NM_001105543, intron 3 of 3) intron (NM_001105543, intron 3 of 3) 185679 NM_020911 91584 Hs.511454 NM_020911 HPRD:10901 PLXNA4 FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003 plexin A4 protein-coding 13-PTNLD9-TUMOR_peak_3807 chr1 154782611 154782766 + 14.57757 NA intron (NM_002249, intron 2 of 7) intron (NM_002249, intron 2 of 7) 49650 NM_170782 3782 Hs.490765 NM_002249 HPRD:04283 KCNN3 KCa2.3|SK3|SKCA3|hSK3 potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3 protein-coding 13-PTNLD9-TUMOR_peak_38061 chr4 19084964 19085103 + 14.57440 NA Intergenic L1HS|LINE|L1 -1061550 NM_153686 254251 Hs.446201 NM_153686 HPRD:10088 LCORL MLR1 ligand dependent nuclear receptor corepressor-like protein-coding 13-PTNLD9-TUMOR_peak_24216 chr19 15228369 15228877 + 14.56113 NA intron (NM_006844, intron 10 of 15) intron (NM_006844, intron 10 of 15) 7987 NM_006844 10994 Hs.78880 NM_006844 HPRD:16152 ILVBL 209L8|AHAS|ILV2H ilvB (bacterial acetolactate synthase)-like protein-coding 13-PTNLD9-TUMOR_peak_44442 chr6 30294822 30295137 + 14.55751 NA promoter-TSS (NR_024053) promoter-TSS (NR_024053) -29 NM_172016 56658 Hs.413493 NM_021253 HPRD:09298 TRIM39 RNF23|TFP|TRIM39B tripartite motif containing 39 protein-coding 13-PTNLD9-TUMOR_peak_48983 chr7 128290573 128290742 + 14.55664 NA intron (NR_024368, intron 3 of 4) intron (NR_024368, intron 3 of 4) 9362 NR_024368 402483 Hs.722350 NM_001039682 LINC01000 - long intergenic non-protein coding RNA 1000 ncRNA 13-PTNLD9-TUMOR_peak_18672 chr16 19097930 19098195 + 14.55517 NA Intergenic CpG 18823 NM_001190983 10229 Hs.157113 NM_016138 HPRD:03401 COQ7 CAT5|CLK-1|CLK1 coenzyme Q7 homolog, ubiquinone (yeast) protein-coding 13-PTNLD9-TUMOR_peak_31484 chr20 49948067 49948312 + 14.55517 NA Intergenic Intergenic 121325 NR_036162 100422889 NR_036162 MIR3194 - microRNA 3194 ncRNA 13-PTNLD9-TUMOR_peak_35871 chr3 129548529 129548869 + 14.55517 NA intron (NM_001017395, intron 2 of 5) intron (NM_001017395, intron 2 of 5) 50703 NM_001017395 23023 Hs.477547 NM_015008 HPRD:15518 TMCC1 - transmembrane and coiled-coil domain family 1 protein-coding 13-PTNLD9-TUMOR_peak_12203 chr12 13332739 13332940 + 14.55517 NA Intergenic Intergenic -16763 NM_001423 2012 Hs.719042 NM_001423 HPRD:11892 EMP1 CL-20|EMP-1|TMP epithelial membrane protein 1 protein-coding 13-PTNLD9-TUMOR_peak_46432 chr6 159205689 159205816 + 14.55517 NA exon (NM_003379, exon 5 of 13) exon (NM_003379, exon 5 of 13) -19967 NR_037482 100500851 NR_037482 miRBase:MI0016424 MIR3918 - microRNA 3918 ncRNA 13-PTNLD9-TUMOR_peak_12866 chr12 53318954 53319202 + 14.55008 NA intron (NM_001256293, intron 1 of 8) intron (NM_001256293, intron 1 of 8) 1175 NM_001256282 3856 Hs.533782 NM_002273 HPRD:01015 KRT8 CARD2|CK-8|CK8|CYK8|K2C8|K8|KO keratin 8 protein-coding 13-PTNLD9-TUMOR_peak_2311 chr1 85100458 85100751 + 14.54642 NA promoter-TSS (NR_027379) promoter-TSS (NR_027379) 99 NR_027379 439927 Hs.407054 NM_001033660 HPRD:08182 C1orf180 - chromosome 1 open reading frame 180 ncRNA 13-PTNLD9-TUMOR_peak_38955 chr4 100737784 100737987 + 14.54642 NA promoter-TSS (NM_014395) promoter-TSS (NM_014395) -96 NM_014395 27071 Hs.436271 NM_014395 HPRD:05773 DAPP1 BAM32 dual adaptor of phosphotyrosine and 3-phosphoinositides protein-coding 13-PTNLD9-TUMOR_peak_20125 chr16 89430128 89430444 + 14.54642 NA intron (NM_001256182, intron 3 of 13) AluJr|SINE|Alu 42745 NM_001242885 100287036 Hs.656995 NM_001242885 LOC100287036 - uncharacterized LOC100287036 protein-coding 13-PTNLD9-TUMOR_peak_11235 chr11 112484412 112484597 + 14.53958 NA Intergenic Intergenic -57979 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LOC387810 - uncharacterized LOC387810 ncRNA 13-PTNLD9-TUMOR_peak_37902 chr4 8560198 8560415 + 14.53515 NA Intergenic Intergenic -21658 NR_045511 27201 Hs.740355 NM_080819 GPR78 - G protein-coupled receptor 78 protein-coding 13-PTNLD9-TUMOR_peak_22151 chr17 76268588 76269096 + 14.53515 NA intron (NR_073178, intron 1 of 6) intron (NR_073178, intron 1 of 6) 5731 NR_073178 100996291 Hs.744493 NR_073178 ENSG00000204277 LOC100996291 - uncharacterized LOC100996291 ncRNA 13-PTNLD9-TUMOR_peak_24425 chr19 18811691 18812066 + 14.53515 NA intron (NM_001098482, intron 1 of 14) intron (NM_001098482, intron 1 of 14) 17453 NM_001098482 23373 Hs.371096 NM_015321 HPRD:06339 CRTC1 MECT1|TORC-1|TORC1|WAMTP1 CREB regulated transcription coactivator 1 protein-coding 13-PTNLD9-TUMOR_peak_48336 chr7 93717163 93717333 + 14.53512 NA Intergenic Intergenic -83558 NM_005868 10282 Hs.489132 NM_005868 HPRD:16107 BET1 HBET1 Bet1 golgi vesicular membrane trafficking protein protein-coding 13-PTNLD9-TUMOR_peak_52024 chr8 129356341 129356497 + 14.53512 NA Intergenic L1PA3|LINE|L1 194057 NR_031613 100302281 NR_031613 miRBase:MI0006341 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 13-PTNLD9-TUMOR_peak_41020 chr5 60954512 60954796 + 14.53512 NA intron (NM_173667, intron 2 of 3) intron (NM_173667, intron 2 of 3) 21018 NM_173667 285668 Hs.683866 NM_173667 HPRD:09962 C5orf64 - chromosome 5 open reading frame 64 protein-coding 13-PTNLD9-TUMOR_peak_34912 chr3 69292111 69292327 + 14.53512 NA intron (NM_015123, intron 7 of 22) intron (NM_015123, intron 7 of 22) -120473 NM_198271 56203 Hs.350621 NM_198271 HPRD:13993 LMOD3 - leiomodin 3 (fetal) protein-coding 13-PTNLD9-TUMOR_peak_37707 chr4 4168765 4168941 + 14.53512 NA Intergenic HERVE-int|LTR|ERV1 59768 NM_177998 133060 Hs.534544 NM_177998 HPRD:07421 OTOP1 - otopetrin 1 protein-coding 13-PTNLD9-TUMOR_peak_25998 chr2 7571573 7571784 + 14.53512 NA intron (NR_038432, intron 4 of 5) intron (NR_038432, intron 4 of 5) 10286 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 13-PTNLD9-TUMOR_peak_45601 chr6 82732404 82732582 + 14.53142 NA Intergenic Intergenic 224978 NM_015525 25998 Hs.306425 NM_015525 HPRD:12105 IBTK BTBD26|BTKI inhibitor of Bruton agammaglobulinemia tyrosine kinase protein-coding 13-PTNLD9-TUMOR_peak_48822 chr7 110027084 110027251 + 14.53142 NA Intergenic Intergenic -426897 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3, subunit I pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_20240 chr17 2026290 2026497 + 14.53142 NA intron (NM_001256827, intron 6 of 11) intron (NM_001256827, intron 6 of 11) -34338 NM_001282326 23293 Hs.448342 NM_017575 HPRD:06502 SMG6 C17orf31|EST1A|SMG-6|hSMG5/7a SMG6 nonsense mediated mRNA decay factor protein-coding 13-PTNLD9-TUMOR_peak_20516 chr17 15394005 15394467 + 14.53142 NA intron (NR_037924, intron 4 of 5) intron (NR_037924, intron 4 of 5) -23311 NM_001204477 284040 Hs.164595 NM_173622 HPRD:08208 CDRT4 - CMT1A duplicated region transcript 4 protein-coding 13-PTNLD9-TUMOR_peak_263 chr1 8157594 8157787 + 14.53142 NA Intergenic Intergenic -71297 NM_018948 54206 Hs.605445 NM_018948 HPRD:09218 ERRFI1 GENE-33|MIG-6|MIG6|RALT ERBB receptor feedback inhibitor 1 protein-coding 13-PTNLD9-TUMOR_peak_8018 chr10 93443831 93444052 + 14.53142 NA Intergenic Intergenic -51083 NM_005398 5507 Hs.303090 NM_005398 HPRD:04298 PPP1R3C PPP1R5 protein phosphatase 1, regulatory subunit 3C protein-coding 13-PTNLD9-TUMOR_peak_39597 chr4 149716380 149716615 + 14.53142 NA Intergenic Intergenic -352825 NM_001166104 4306 Hs.163924 NM_000901 HPRD:02991 NR3C2 MCR|MLR|MR|NR3C2VIT nuclear receptor subfamily 3, group C, member 2 protein-coding 13-PTNLD9-TUMOR_peak_54947 chr9 134483913 134484093 + 14.53142 NA intron (NM_005312, intron 11 of 23) intron (NM_005312, intron 11 of 23) -77341 NM_031432 83549 Hs.9597 NM_031432 HPRD:18256 UCK1 URK1 uridine-cytidine kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_52019 chr8 129270872 129271084 + 14.53142 NA Intergenic Intergenic 108616 NR_031613 100302281 NR_031613 miRBase:MI0006341 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 13-PTNLD9-TUMOR_peak_15558 chr14 35843599 35844021 + 14.53065 NA Intergenic Intergenic 30150 NM_020529 4792 Hs.81328 NM_020529 HPRD:01235 NFKBIA IKBA|MAD-3|NFKBI nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha protein-coding 13-PTNLD9-TUMOR_peak_50680 chr8 39976531 39976874 + 14.53065 NA Intergenic Intergenic -34285 NM_020130 56892 Hs.591849 NM_020130 HPRD:09650 C8orf4 TC-1|TC1 chromosome 8 open reading frame 4 protein-coding 13-PTNLD9-TUMOR_peak_5237 chr1 205916232 205916401 + 14.53065 NA Intergenic Intergenic -3728 NM_052934 115019 Hs.164073 NM_052934 HPRD:12242 SLC26A9 - solute carrier family 26 (anion exchanger), member 9 protein-coding 13-PTNLD9-TUMOR_peak_41379 chr5 77995363 77996005 + 14.53065 NA Intergenic Intergenic -51036 NM_005779 10184 Hs.79299 NM_005779 HPRD:17272 LHFPL2 - lipoma HMGIC fusion partner-like 2 protein-coding 13-PTNLD9-TUMOR_peak_50899 chr8 49532557 49533006 + 14.53065 NA promoter-TSS (NR_105004) promoter-TSS (NR_105004) -182 NR_105004 101929217 Hs.547790 NR_105004 ENSG00000253455 LOC101929217 - uncharacterized LOC101929217 ncRNA 13-PTNLD9-TUMOR_peak_36633 chr3 165557368 165557620 + 14.53065 NA Intergenic X3_LINE|LINE|RTE-BovB -2241 NM_000055 590 Hs.420483 NM_000055 HPRD:01519 BCHE CHE1|CHE2|E1 butyrylcholinesterase protein-coding 13-PTNLD9-TUMOR_peak_16123 chr14 69171568 69171718 + 14.53065 NA Intergenic Intergenic 88988 NM_004926 677 Hs.85155 NM_004926 HPRD:03041 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein-like 1 protein-coding 13-PTNLD9-TUMOR_peak_5015 chr1 202082559 202082714 + 14.52617 NA Intergenic Intergenic -9393 NM_004767 9283 Hs.132049 NM_004767 GPR37L1 ET(B)R-LP-2|ETBR-LP-2 G protein-coupled receptor 37 like 1 protein-coding 13-PTNLD9-TUMOR_peak_2732 chr1 109289975 109290120 + 14.52323 NA intron (NM_007269, intron 1 of 18) intron (NM_007269, intron 1 of 18) 762 NM_007269 6814 Hs.530436 NM_007269 HPRD:10517 STXBP3 MUNC18-3|MUNC18C|PSP|UNC-18C syntaxin binding protein 3 protein-coding 13-PTNLD9-TUMOR_peak_50426 chr8 27192096 27192400 + 14.50391 NA intron (NM_173174, intron 6 of 35) intron (NM_173174, intron 6 of 35) 9167 NM_173175 2185 Hs.491322 NM_004103 HPRD:03131 PTK2B CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK protein tyrosine kinase 2 beta protein-coding 13-PTNLD9-TUMOR_peak_28927 chr2 162949691 162950021 + 14.50391 NA Intergenic L3b|LINE|CR1 -18804 NM_001935 1803 Hs.368912 NM_001935 HPRD:02187 DPP4 ADABP|ADCP2|CD26|DPPIV|TP103 dipeptidyl-peptidase 4 protein-coding 13-PTNLD9-TUMOR_peak_48794 chr7 107593046 107593542 + 14.50391 NA intron (NM_002291, intron 22 of 33) intron (NM_002291, intron 22 of 33) 50510 NM_002291 3912 Hs.650585 NM_002291 HPRD:01029 LAMB1 CLM|LIS5 laminin, beta 1 protein-coding 13-PTNLD9-TUMOR_peak_304 chr1 8960074 8960396 + 14.50292 NA Intergenic AluSz|SINE|Alu -21084 NM_001428 2023 Hs.517145 NM_001428 HPRD:01400 ENO1 ENO1L1|MPB1|NNE|PPH enolase 1, (alpha) protein-coding 13-PTNLD9-TUMOR_peak_21689 chr17 59434150 59434325 + 14.49467 NA intron (NM_017679, intron 22 of 23) intron (NM_017679, intron 22 of 23) 42730 NR_125749 103689912 Hs.410998 NR_125749 TBX2-AS1 - TBX2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_13146 chr12 64565621 64565863 + 14.49467 NA Intergenic Intergenic 50334 NM_001300940 144577 Hs.444671 NM_152440 HPRD:08727 C12orf66 - chromosome 12 open reading frame 66 protein-coding 13-PTNLD9-TUMOR_peak_36653 chr3 168744750 168744936 + 14.49467 NA Intergenic Intergenic 119250 NM_001105077 2122 Hs.744090 NM_004991 HPRD:01310 MECOM AML1-EVI-1|EVI1|MDS1|MDS1-EVI1|PRDM3 MDS1 and EVI1 complex locus protein-coding 13-PTNLD9-TUMOR_peak_45370 chr6 55956045 55956524 + 14.49467 NA intron (NM_030820, intron 17 of 29) intron (NM_030820, intron 17 of 29) 156094 NM_030820 81578 Hs.47629 NM_030820 HPRD:09884 COL21A1 COLA1L|dJ682J15.1|dJ708F5.1 collagen, type XXI, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_10324 chr11 66751570 66751740 + 14.49467 NA Intergenic MIRc|SINE|MIR 8901 NM_001136485 254439 Hs.232604 NM_001136485 ENSG00000173237 C11orf86 - chromosome 11 open reading frame 86 protein-coding 13-PTNLD9-TUMOR_peak_39603 chr4 150330389 150330735 + 14.49467 NA Intergenic Intergenic -668864 NM_001040260 166614 Hs.591683 NM_152619 HPRD:13122 DCLK2 CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2 doublecortin-like kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_29287 chr2 183943429 183943669 + 14.48939 NA 5' UTR (NM_001142314, exon 1 of 3) 5' UTR (NM_001142314, exon 1 of 3) 262 NM_080876 142679 Hs.132237 NM_080876 HPRD:13254 DUSP19 DUSP17|LMWDSP3|SKRP1|TS-DSP1 dual specificity phosphatase 19 protein-coding 13-PTNLD9-TUMOR_peak_5507 chr1 223354167 223354552 + 14.48939 NA Intergenic Intergenic -37735 NM_003268 7100 Hs.604542 NM_003268 HPRD:04326 TLR5 MELIOS|SLE1|SLEB1|TIL3 toll-like receptor 5 protein-coding 13-PTNLD9-TUMOR_peak_43857 chr6 13481079 13481473 + 14.48191 NA intron (NM_001242629, intron 1 of 1) L2b|LINE|L2 5139 NM_001242628 54438 Hs.484686 NM_018988 HPRD:13574 GFOD1 ADG-90|C6orf114 glucose-fructose oxidoreductase domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_36927 chr3 183003675 183003885 + 14.48063 NA intron (NM_015078, intron 14 of 29) intron (NM_015078, intron 14 of 29) 32748 NM_032047 84002 Hs.718506 NM_032047 HPRD:12511 B3GNT5 B3GN-T5|beta3Gn-T5 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 protein-coding 13-PTNLD9-TUMOR_peak_52224 chr8 135870434 135870567 + 14.48063 NA intron (NR_125427, intron 1 of 2) MIRb|SINE|MIR 8322 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 13-PTNLD9-TUMOR_peak_29452 chr2 197688541 197688750 + 14.48063 NA Intergenic MIRb|SINE|MIR -13645 NM_213608 401027 Hs.245666 NM_213608 C2orf66 IIDS6411|UNQ6411 chromosome 2 open reading frame 66 protein-coding 13-PTNLD9-TUMOR_peak_40416 chr5 16539332 16539630 + 14.48063 NA intron (NM_001034850, intron 3 of 8) intron (NM_001034850, intron 3 of 8) -30374 NM_019000 54463 Hs.481704 NM_019000 HPRD:07879 FAM134B JK-1|JK1 family with sequence similarity 134, member B protein-coding 13-PTNLD9-TUMOR_peak_46900 chr7 12239129 12239263 + 14.48063 NA Intergenic Intergenic -11652 NM_001134232 54664 Hs.396358 NM_018374 TMEM106B - transmembrane protein 106B protein-coding 13-PTNLD9-TUMOR_peak_30957 chr20 35952439 35952715 + 14.48063 NA Intergenic L1ME2z|LINE|L1 -20511 NM_005417 6714 Hs.195659 NM_005417 HPRD:01819 SRC ASV|SRC1|c-SRC|p60-Src SRC proto-oncogene, non-receptor tyrosine kinase protein-coding 13-PTNLD9-TUMOR_peak_27235 chr2 71251075 71251231 + 14.48063 NA promoter-TSS (NR_002185) promoter-TSS (NR_002185) -52 NR_002185 79315 Hs.327033 NR_002185 ENSG00000205847 OR7E91P - olfactory receptor, family 7, subfamily E, member 91 pseudogene pseudo 13-PTNLD9-TUMOR_peak_6074 chr1 241992027 241992266 + 14.48063 NA Intergenic Intergenic -19347 NM_130398 9156 Hs.498248 NM_003686 HPRD:06932 EXO1 HEX1|hExoI exonuclease 1 protein-coding 13-PTNLD9-TUMOR_peak_27437 chr2 85779284 85779438 + 14.48063 NA intron (NM_000821, intron 10 of 14) intron (NM_000821, intron 10 of 14) 9296 NM_001142269 2677 Hs.77719 NM_000821 HPRD:00665 GGCX VKCFD1 gamma-glutamyl carboxylase protein-coding 13-PTNLD9-TUMOR_peak_10317 chr11 66610705 66611176 + 14.48063 NA promoter-TSS (NM_001032279) promoter-TSS (NM_001032279) 57 NM_005133 9986 Hs.654972 NM_005133 HPRD:07289 RCE1 FACE2|RCE1A|RCE1B Ras converting CAAX endopeptidase 1 protein-coding 13-PTNLD9-TUMOR_peak_21942 chr17 72601563 72601845 + 14.48063 NA Intergenic Intergenic -13334 NM_001115152 100131439 Hs.531099 NM_001115152 CD300LD CD300D|CLM-4|CMRF35-A4|CMRF35A4 CD300 molecule-like family member d protein-coding 13-PTNLD9-TUMOR_peak_41954 chr5 127193977 127194438 + 14.48063 NA Intergenic L2c|LINE|L2 205500 NM_001127385 613212 Hs.66194 NM_001048252 ENSG00000205279 CTXN3 KABE cortexin 3 protein-coding 13-PTNLD9-TUMOR_peak_7344 chr10 50807134 50807301 + 14.48063 NA Intergenic Intergenic -9924 NM_020984 1103 Hs.302002 NM_020549 HPRD:07510 CHAT CHOACTASE|CMS1A|CMS1A2 choline O-acetyltransferase protein-coding 13-PTNLD9-TUMOR_peak_49107 chr7 130873434 130873690 + 14.48063 NA intron (NM_001145354, intron 2 of 18) intron (NM_001145354, intron 2 of 18) 78707 NM_001145354 4289 Hs.44693 NM_013255 HPRD:16129 MKLN1 TWA2 muskelin 1, intracellular mediator containing kelch motifs protein-coding 13-PTNLD9-TUMOR_peak_23130 chr18 46201734 46201912 + 14.48063 NA intron (NM_014772, intron 6 of 11) intron (NM_014772, intron 6 of 11) 4852 NR_039897 100616366 NR_039897 MIR4743 - microRNA 4743 ncRNA 13-PTNLD9-TUMOR_peak_34738 chr3 57014946 57015326 + 14.48063 NA intron (NM_001128615, intron 2 of 12) intron (NM_001128615, intron 2 of 12) 41068 NR_046572 100874200 Hs.549631 NR_046572 ENSG00000240198 ARHGEF3-AS1 - ARHGEF3 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_18817 chr16 24680777 24681033 + 14.48063 NA intron (NR_122072, intron 1 of 2) intron (NR_122072, intron 1 of 2) 1478 NR_122072 400511 Hs.592028 NR_122072 HPRD:16985 LOC400511 - uncharacterized LOC400511 ncRNA 13-PTNLD9-TUMOR_peak_4944 chr1 201279803 201280487 + 14.47803 NA intron (NM_001005337, intron 2 of 13) intron (NM_001005337, intron 2 of 13) 27565 NM_000299 5317 Hs.497350 NM_000299 HPRD:03579 PKP1 B6P plakophilin 1 protein-coding 13-PTNLD9-TUMOR_peak_10391 chr11 67781916 67782080 + 14.46712 NA intron (NM_001030010, intron 1 of 8) intron (NM_001030010, intron 1 of 8) 4223 NM_001290058 221 Hs.523841 NM_000694 HPRD:02716 ALDH3B1 ALDH4|ALDH7 aldehyde dehydrogenase 3 family, member B1 protein-coding 13-PTNLD9-TUMOR_peak_25637 chr19 54676547 54676945 + 14.46626 NA TTS (NM_001146056) TTS (NM_001146056) 198 NM_001145303 147798 Hs.355126 NM_144686 HPRD:15515 TMC4 - transmembrane channel-like 4 protein-coding 13-PTNLD9-TUMOR_peak_27634 chr2 92220505 92220685 + 14.46538 NA Intergenic HERVL-int|LTR|ERVL 91436 NR_027714 440888 Hs.730239 NM_001032412 ENSG00000226481 ACTR3BP2 FKSG73 ACTR3B pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_13558 chr12 98833910 98834085 + 14.46487 NA Intergenic Intergenic 16926 NR_033801 121456 Hs.620643 NR_033801 ENSG00000227825 SLC9A7P1 - solute carrier family 9, subfamily A (NHE7, cation proton antiporter 7), member 7 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_26890 chr2 48675905 48676127 + 14.46487 NA intron (NR_024188, intron 1 of 21) MER58A|DNA|hAT-Charlie 8108 NR_024188 129285 Hs.654619 NM_152994 HPRD:17294 PPP1R21 CCDC128|KLRAQ1 protein phosphatase 1, regulatory subunit 21 protein-coding 13-PTNLD9-TUMOR_peak_4331 chr1 168290315 168290494 + 14.46487 NA Intergenic Intergenic 40126 NM_005149 9095 Hs.716656 NM_005149 HPRD:05214 TBX19 TBS19|TPIT|dJ747L4.1 T-box 19 protein-coding 13-PTNLD9-TUMOR_peak_27199 chr2 70296201 70296584 + 14.46487 NA intron (NR_033872, intron 4 of 10) intron (NR_033872, intron 4 of 10) 17755 NR_033872 400960 Hs.683864 NR_033872 ENSG00000179818 PCBP1-AS1 - PCBP1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_38482 chr4 58473909 58474045 + 14.46487 NA Intergenic Intergenic -497426 NM_001253835 3490 Hs.479808 NM_001553 HPRD:04183 IGFBP7 AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF insulin-like growth factor binding protein 7 protein-coding 13-PTNLD9-TUMOR_peak_16508 chr14 95973581 95973828 + 14.46487 NA Intergenic Intergenic 26262 NR_003002 677768 Hs.448753 NR_003002 ENSG00000252481 SCARNA13 U93 small Cajal body-specific RNA 13 ncRNA 13-PTNLD9-TUMOR_peak_52058 chr8 130799303 130799479 + 14.46487 NA promoter-TSS (NM_031415) promoter-TSS (NM_031415) -257 NM_031415 56169 Hs.133244 NM_031415 HPRD:12222 GSDMC MLZE gasdermin C protein-coding 13-PTNLD9-TUMOR_peak_19662 chr16 69564658 69564879 + 14.46487 NA Intergenic Intergenic 35003 NR_031719 100302119 NR_031719 miRBase:MI0007259 MIR1538 MIRN1538|hsa-mir-1538 microRNA 1538 ncRNA 13-PTNLD9-TUMOR_peak_12750 chr12 50648318 50648525 + 14.46487 NA intron (NM_001113546, intron 1 of 10) intron (NM_001113546, intron 1 of 10) -20426 NR_031625 100302220 NR_031625 MIR1293 MIRN1293|hsa-mir-1293 microRNA 1293 ncRNA 13-PTNLD9-TUMOR_peak_1979 chr1 60539620 60539820 + 14.46487 NA promoter-TSS (NM_152377) promoter-TSS (NM_152377) -278 NM_152377 127795 Hs.47385 NM_152377 HPRD:11338 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 13-PTNLD9-TUMOR_peak_52690 chr9 5839351 5839559 + 14.46487 NA Intergenic Intergenic -6374 NM_024896 79956 Hs.591078 NM_024896 HPRD:17227 ERMP1 FXNA|KIAA1815|bA207C16.3 endoplasmic reticulum metallopeptidase 1 protein-coding 13-PTNLD9-TUMOR_peak_25813 chr19 58858605 58858743 + 14.46224 NA intron (NM_130786, intron 7 of 7) CpG -4662 NR_015380 503538 Hs.709582 NR_015380 ENSG00000268895 A1BG-AS1 A1BG-AS|A1BGAS|NCRNA00181 A1BG antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_42101 chr5 133583210 133583408 + 14.46224 NA Intergenic Intergenic -21359 NM_002715 5515 Hs.105818 NM_002715 PPP2CA PP2Ac|PP2CA|PP2Calpha|RP-C protein phosphatase 2, catalytic subunit, alpha isozyme protein-coding 13-PTNLD9-TUMOR_peak_43576 chr6 4281042 4281260 + 14.45398 NA Intergenic Intergenic 144845 NR_103764 100507506 Hs.665936 NR_103764 ENSG00000234817 LOC100507506 - uncharacterized LOC100507506 ncRNA 13-PTNLD9-TUMOR_peak_2560 chr1 95087041 95087339 + 14.45115 NA Intergenic Intergenic -79777 NM_001993 2152 Hs.62192 NM_001993 HPRD:00603 F3 CD142|TF|TFA coagulation factor III (thromboplastin, tissue factor) protein-coding 13-PTNLD9-TUMOR_peak_42666 chr5 150419880 150420272 + 14.44376 NA intron (NM_001258454, intron 11 of 17) intron (NM_001258454, intron 11 of 17) 20077 NM_002084 2878 Hs.386793 NM_002084 HPRD:11750 GPX3 GPx-P|GSHPx-3|GSHPx-P glutathione peroxidase 3 (plasma) protein-coding 13-PTNLD9-TUMOR_peak_23765 chr19 6061091 6061440 + 14.44376 NA intron (NM_000635, intron 1 of 17) intron (NM_000635, intron 1 of 17) 49399 NM_000635 5990 Hs.465709 NM_000635 HPRD:00824 RFX2 - regulatory factor X, 2 (influences HLA class II expression) protein-coding 13-PTNLD9-TUMOR_peak_17794 chr15 82655250 82655421 + 14.44376 NA intron (NR_004847, intron 1 of 4).2 intron (NR_004847, intron 1 of 4).2 7981 NR_004847 100134869 Hs.735222 NR_004847 UBE2Q2P2 UBE2Q2P3|UBE2QP2 ubiquitin-conjugating enzyme E2Q family member 2 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_52604 chr9 734927 735492 + 14.44376 NA intron (NM_153186, intron 6 of 10) intron (NM_153186, intron 6 of 10) 28403 NM_153186 23189 Hs.306764 NM_015158 HPRD:09651 KANK1 ANKRD15|CPSQ2|KANK KN motif and ankyrin repeat domains 1 protein-coding 13-PTNLD9-TUMOR_peak_47981 chr7 74607406 74607773 + 14.44352 NA intron (NR_002206, intron 19 of 23).2 intron (NR_002206, intron 19 of 23).2 -19787 NR_003187 654817 Hs.647047 NR_003187 HPRD:01990 NCF1C SH3PXD1C neutrophil cytosolic factor 1C pseudogene pseudo 13-PTNLD9-TUMOR_peak_48517 chr7 100070545 100070735 + 14.44304 NA intron (NM_030935, intron 3 of 4) intron (NM_030935, intron 3 of 4) 6262 NM_030935 81628 Hs.469798 NM_030935 HPRD:18231 TSC22D4 THG-1|THG1|TILZ2 TSC22 domain family, member 4 protein-coding 13-PTNLD9-TUMOR_peak_28978 chr2 166532137 166532321 + 14.43528 NA intron (NM_024969, intron 3 of 4) intron (NM_024969, intron 3 of 4) 103383 NM_024969 80034 Hs.470479 NM_024969 HPRD:18144 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine-serine-rich nuclear protein 3 protein-coding 13-PTNLD9-TUMOR_peak_46587 chr6 170341639 170341916 + 14.43528 NA Intergenic Intergenic -142856 NR_026781 401288 Hs.556095 NM_207502 HPRD:16657 LINC00242 C6orf122|NCRNA00242|dJ266L20.5 long intergenic non-protein coding RNA 242 ncRNA 13-PTNLD9-TUMOR_peak_10911 chr11 92967923 92968077 + 14.43528 NA Intergenic Intergenic -36859 NM_152313 120103 Hs.148766 NM_152313 SLC36A4 PAT4 solute carrier family 36 (proton/amino acid symporter), member 4 protein-coding 13-PTNLD9-TUMOR_peak_54273 chr9 105629744 105630143 + 14.43528 NA Intergenic MER77|LTR|ERVL -127650 NM_001340 1539 Hs.3232 NM_001340 HPRD:04945 CYLC2 - cylicin, basic protein of sperm head cytoskeleton 2 protein-coding 13-PTNLD9-TUMOR_peak_17390 chr15 60700733 60700956 + 14.43528 NA Intergenic Intergenic -10659 NM_004039 302 Hs.511605 NM_004039 HPRD:01061 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 13-PTNLD9-TUMOR_peak_22744 chr18 20047861 20048049 + 14.43120 NA Intergenic MER44B|DNA|TcMar-Tigger -50077 NM_172241 64693 Hs.406709 NM_022663 HPRD:16395 CTAGE1 CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2 cutaneous T-cell lymphoma-associated antigen 1 protein-coding 13-PTNLD9-TUMOR_peak_35698 chr3 125548800 125549033 + 14.43120 NA intron (NR_125396, intron 2 of 2) intron (NR_125396, intron 2 of 2) -39521 NR_031687 100302204 NR_031687 miRBase:MI0006421 MIR548I1 MIR548I-1|MIRN548I1|hsa-mir-548i-1 microRNA 548i-1 ncRNA 13-PTNLD9-TUMOR_peak_14910 chr13 80059190 80059579 + 14.43120 NA intron (NM_001161407, intron 1 of 7) intron (NM_001161407, intron 1 of 7) -4018 NR_046685 100874208 Hs.602801 NR_046685 ENSG00000232132 NDFIP2-AS1 - NDFIP2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_10751 chr11 78947788 78948076 + 14.43120 NA intron (NM_001098816, intron 2 of 33) intron (NM_001098816, intron 2 of 33) 165221 NR_030598 100126333 NR_030598 miRBase:MI0005543 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 13-PTNLD9-TUMOR_peak_43584 chr6 4334437 4334555 + 14.43120 NA Intergenic L1PA3|LINE|L1 198190 NR_103764 100507506 Hs.665936 NR_103764 ENSG00000234817 LOC100507506 - uncharacterized LOC100507506 ncRNA 13-PTNLD9-TUMOR_peak_35654 chr3 124743719 124743887 + 14.43120 NA intron (NM_020733, intron 3 of 16) intron (NM_020733, intron 3 of 16) 30999 NM_020733 57493 Hs.477420 NM_020733 ENSG00000173706 HEG1 HEG|MST112|MSTP112 heart development protein with EGF-like domains 1 protein-coding 13-PTNLD9-TUMOR_peak_11517 chr11 124770458 124770693 + 14.43120 NA Intergenic Intergenic -2744 NM_001301088 54538 Hs.524121 NM_019055 HPRD:09604 ROBO4 ECSM4|MRB roundabout, axon guidance receptor, homolog 4 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_32246 chr21 37304565 37304990 + 14.43120 NA Intergenic Intergenic 72188 NR_110418 101928269 Hs.589909 NR_110418 ENSG00000159216 LOC101928269 - uncharacterized LOC101928269 ncRNA 13-PTNLD9-TUMOR_peak_20162 chr16 89988200 89988427 + 14.42998 NA promoter-TSS (NM_001197181) promoter-TSS (NM_001197181) -104 NM_001197181 10381 Hs.511743 NM_006086 HPRD:04044 TUBB3 CDCBM|CDCBM1|CFEOM3|CFEOM3A|FEOM3|TUBB4|beta-4 tubulin, beta 3 class III protein-coding 13-PTNLD9-TUMOR_peak_50021 chr8 7916756 7916872 + 14.42998 NA Intergenic CpG 29797 NR_031689 100302186 NR_031689 miRBase:MI0006423 MIR548I3 MIR548I-3|MIRN548I3|hsa-mir-548i-3 microRNA 548i-3 ncRNA 13-PTNLD9-TUMOR_peak_32144 chr21 33818824 33819032 + 14.42998 NA intron (NR_104472, intron 1 of 6) intron (NR_104472, intron 1 of 6) 34183 NR_104472 59271 Hs.208358 NM_058187 HPRD:10760 EVA1C B18|B19|C21orf63|C21orf64|FAM176C|SUE21 eva-1 homolog C (C. elegans) protein-coding 13-PTNLD9-TUMOR_peak_50877 chr8 48572421 48572601 + 14.42702 NA intron (NM_001080394, intron 10 of 19) intron (NM_001080394, intron 10 of 19) 78215 NM_005195 1052 Hs.440829 NM_005195 CEBPD C/EBP-delta|CELF|CRP3|NF-IL6-beta CCAAT/enhancer binding protein (C/EBP), delta protein-coding 13-PTNLD9-TUMOR_peak_8101 chr10 99160984 99161256 + 14.42702 NA promoter-TSS (NM_015179) promoter-TSS (NM_015179) 7 NM_015179 23223 Hs.434251 NM_015179 HPRD:11103 RRP12 KIAA0690 ribosomal RNA processing 12 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_38679 chr4 79481820 79482024 + 14.42702 NA intron (NM_005139, intron 2 of 12) MER21C|LTR|ERVL 9180 NM_005139 306 Hs.480042 NM_005139 HPRD:00111 ANXA3 ANX3 annexin A3 protein-coding 13-PTNLD9-TUMOR_peak_42583 chr5 148941453 148941615 + 14.42702 NA Intergenic Intergenic -10419 NM_001892 1452 Hs.529862 NM_001892 HPRD:02739 CSNK1A1 CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975 casein kinase 1, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_40970 chr5 57748397 57748667 + 14.42702 NA Intergenic L2b|LINE|L2 7434 NM_006622 10769 Hs.398157 NM_006622 HPRD:06118 PLK2 SNK|hPlk2|hSNK polo-like kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_44102 chr6 22892796 22893047 + 14.42702 NA Intergenic MLT1M|LTR|ERVL-MaLR 323243 NM_138574 154150 Hs.629246 NM_138574 HPRD:17935 HDGFL1 PWWP1|dJ309H15.1 hepatoma derived growth factor-like 1 protein-coding 13-PTNLD9-TUMOR_peak_36103 chr3 138493416 138493580 + 14.42702 NA Intergenic Intergenic -15297 NM_006219 5291 Hs.239818 NM_006219 PIK3CB P110BETA|PI3K|PI3KBETA|PIK3C1 phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit beta protein-coding 13-PTNLD9-TUMOR_peak_36634 chr3 165592631 165592888 + 14.42702 NA Intergenic L1PB1|LINE|L1 -37506 NM_000055 590 Hs.420483 NM_000055 HPRD:01519 BCHE CHE1|CHE2|E1 butyrylcholinesterase protein-coding 13-PTNLD9-TUMOR_peak_52299 chr8 141071040 141071240 + 14.42032 NA intron (NM_031466, intron 17 of 22) MER5B|DNA|hAT-Charlie -355841 NM_001282534 51305 Hs.493037 NM_001282534 HPRD:16167 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium channel, subfamily K, member 9 protein-coding 13-PTNLD9-TUMOR_peak_4453 chr1 173992780 173992944 + 14.42025 NA Intergenic Intergenic -30652 NM_001300850 149041 Hs.30258 NM_172071 HPRD:13913 RC3H1 RNF198|ROQUIN ring finger and CCCH-type domains 1 protein-coding 13-PTNLD9-TUMOR_peak_5301 chr1 207078666 207078972 + 14.42025 NA intron (NM_005449, intron 7 of 7) intron (NM_005449, intron 7 of 7) 8031 NM_006850 11009 Hs.58831 NM_006850 HPRD:04995 IL24 C49A|FISP|IL10B|MDA7|MOB5|ST16 interleukin 24 protein-coding 13-PTNLD9-TUMOR_peak_37767 chr4 6274971 6275199 + 14.41232 NA intron (NM_001145853, intron 1 of 7) intron (NM_001145853, intron 1 of 7) 3508 NM_006005 7466 Hs.518602 NM_006005 HPRD:05864 WFS1 CTRCT41|WFRS|WFS|WFSL Wolfram syndrome 1 (wolframin) protein-coding 13-PTNLD9-TUMOR_peak_23205 chr18 49140468 49140737 + 14.40381 NA Intergenic Intergenic 222190 NR_040074 100287225 Hs.448920 NR_040074 ENSG00000227115 LOC100287225 - uncharacterized LOC100287225 ncRNA 13-PTNLD9-TUMOR_peak_49145 chr7 131801091 131801454 + 14.40381 NA Intergenic Intergenic 206293 NR_110836 101928782 Hs.571369 NR_110836 ENSG00000224865 LOC101928782 - uncharacterized LOC101928782 ncRNA 13-PTNLD9-TUMOR_peak_19357 chr16 53789336 53789633 + 14.39872 NA intron (NM_001080432, intron 1 of 8) intron (NM_001080432, intron 1 of 8) 51609 NM_001080432 79068 Hs.528833 NM_001080432 FTO ALKBH9 fat mass and obesity associated protein-coding 13-PTNLD9-TUMOR_peak_39317 chr4 129162811 129163044 + 14.39872 NA Intergenic Intergenic 47057 NM_006320 10424 Hs.507910 NM_006320 HPRD:09665 PGRMC2 DG6|PMBP progesterone receptor membrane component 2 protein-coding 13-PTNLD9-TUMOR_peak_44629 chr6 32636224 32636388 + 14.39872 NA Intergenic Intergenic -1840 NM_001243961 3119 Hs.409934 NM_002123 HPRD:05054 HLA-DQB1 CELIAC1|HLA-DQB|IDDM1 major histocompatibility complex, class II, DQ beta 1 protein-coding 13-PTNLD9-TUMOR_peak_41706 chr5 109079559 109079814 + 14.39872 NA intron (NM_002372, intron 4 of 21) L2c|LINE|L2 54619 NM_002372 4124 Hs.432822 NM_002372 HPRD:01110 MAN2A1 AMan II|GOLIM7|MANA2|MANII mannosidase, alpha, class 2A, member 1 protein-coding 13-PTNLD9-TUMOR_peak_49125 chr7 131304390 131304588 + 14.39872 NA Intergenic Intergenic -63113 NM_001018111 5420 Hs.744213 NM_005397 HPRD:04025 PODXL Gp200|PC|PCLP|PCLP-1 podocalyxin-like protein-coding 13-PTNLD9-TUMOR_peak_44506 chr6 31038497 31038694 + 14.39872 NA Intergenic LTR78|LTR|ERV1 17368 NR_003948 285834 Hs.207528 NR_003948 ENSG00000228789 HCG22 PBMUCL2 HLA complex group 22 ncRNA 13-PTNLD9-TUMOR_peak_34485 chr3 48170317 48170592 + 14.39872 NA Intergenic Intergenic -39685 NM_001134364 4134 Hs.517949 NM_002375 HPRD:01141 MAP4 - microtubule-associated protein 4 protein-coding 13-PTNLD9-TUMOR_peak_14009 chr12 120165511 120165717 + 14.39872 NA intron (NM_001206999, intron 28 of 47) AluJb|SINE|Alu -14085 NR_031589 100302274 NR_031589 MIR1178 MIRN1178|hsa-mir-1178 microRNA 1178 ncRNA 13-PTNLD9-TUMOR_peak_28406 chr2 129293530 129293747 + 14.39872 NA Intergenic AluSc8|SINE|Alu -217467 NM_004807 9394 Hs.512841 NM_004807 HPRD:07274 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_4053 chr1 159806502 159806872 + 14.39872 NA 3' UTR (NM_020125, exon 5 of 5) 3' UTR (NM_020125, exon 5 of 5) 10208 NM_020125 56833 Hs.438683 NM_020125 HPRD:09429 SLAMF8 BLAME|CD353|SBBI42 SLAM family member 8 protein-coding 13-PTNLD9-TUMOR_peak_17369 chr15 59592598 59592837 + 14.39872 NA intron (NM_004998, intron 1 of 27) intron (NM_004998, intron 1 of 27) 72354 NM_004998 4643 Hs.654506 NM_004998 HPRD:03281 MYO1E FSGS6|HuncM-IC|MYO1C myosin IE protein-coding 13-PTNLD9-TUMOR_peak_26637 chr2 38763327 38763526 + 14.39872 NA Intergenic CpG -20544 NR_110259 101929596 Hs.537341 NR_110259 LOC101929596 - uncharacterized LOC101929596 ncRNA 13-PTNLD9-TUMOR_peak_28020 chr2 111074160 111074313 + 14.39341 NA Intergenic Intergenic 31806 NR_039941 100616123 NR_039941 MIR4436B1 MIR4436B|hsa-mir-4436b-1 microRNA 4436b-1 ncRNA 13-PTNLD9-TUMOR_peak_35901 chr3 130466392 130466732 + 14.39341 NA promoter-TSS (NM_014602) promoter-TSS (NM_014602) -866 NM_014602 30849 Hs.149032 NM_014602 HPRD:04010 PIK3R4 VPS15|p150 phosphoinositide-3-kinase, regulatory subunit 4 protein-coding 13-PTNLD9-TUMOR_peak_3741 chr1 153671655 153671884 + 14.38543 NA Intergenic Intergenic -9500 NR_107050 102466879 NR_107050 MIR8083 hsa-mir-8083 microRNA 8083 ncRNA 13-PTNLD9-TUMOR_peak_36009 chr3 134069819 134070071 + 14.38535 NA Intergenic Intergenic 16759 NR_106885 102466744 NR_106885 MIR6827 hsa-mir-6827 microRNA 6827 ncRNA 13-PTNLD9-TUMOR_peak_31396 chr20 48619831 48620042 + 14.38189 NA Intergenic L1MB7|LINE|L1 20423 NM_005985 6615 Hs.48029 NM_005985 HPRD:05025 SNAI1 SLUGH2|SNA|SNAH|SNAIL|SNAIL1|dJ710H13.1 snail family zinc finger 1 protein-coding 13-PTNLD9-TUMOR_peak_43180 chr5 176621330 176621566 + 14.38189 NA intron (NM_172349, intron 4 of 23) AluJb|SINE|Alu 60615 NM_022455 64324 Hs.106861 NM_022455 HPRD:09455 NSD1 ARA267|KMT3B|SOTOS|SOTOS1|STO nuclear receptor binding SET domain protein 1 protein-coding 13-PTNLD9-TUMOR_peak_32767 chr22 20050912 20051141 + 14.38189 NA intron (NM_001283179, intron 6 of 6) intron (NM_001283179, intron 6 of 6) -16729 NM_022720 54487 Hs.643452 NM_022720 HPRD:09913 DGCR8 C22orf12|DGCRK6|Gy1|pasha DGCR8 microprocessor complex subunit protein-coding 13-PTNLD9-TUMOR_peak_13898 chr12 113416043 113416554 + 14.38189 NA promoter-TSS (NM_002535) promoter-TSS (NM_002535) 24 NM_016817 4939 Hs.414332 NM_002535 HPRD:04518 OAS2 - 2'-5'-oligoadenylate synthetase 2, 69/71kDa protein-coding 13-PTNLD9-TUMOR_peak_46736 chr7 3234228 3234848 + 14.38189 NA Intergenic MER74A|LTR|ERVL -106542 NM_152744 221935 Hs.653013 NM_152744 HPRD:07388 SDK1 - sidekick cell adhesion molecule 1 protein-coding 13-PTNLD9-TUMOR_peak_6666 chr10 23112102 23112403 + 14.38189 NA Intergenic Intergenic -104701 NM_001282746 219681 Hs.659807 NM_173081 HPRD:12487 ARMC3 CT81|KU-CT-1 armadillo repeat containing 3 protein-coding 13-PTNLD9-TUMOR_peak_1697 chr1 48337557 48337835 + 14.38189 NA intron (NM_001194986, intron 2 of 6) intron (NM_001194986, intron 2 of 6) 124866 NM_001194986 388630 Hs.61504 NM_001194986 ENSG00000269113 TRABD2B TIKI2 TraB domain containing 2B protein-coding 13-PTNLD9-TUMOR_peak_48423 chr7 98050397 98050562 + 14.38189 NA Intergenic Intergenic -20052 NM_018842 55971 Hs.656063 NM_018842 HPRD:11270 BAIAP2L1 IRTKS BAI1-associated protein 2-like 1 protein-coding 13-PTNLD9-TUMOR_peak_5918 chr1 234767567 234767821 + 14.38189 NA intron (NR_033927, intron 1 of 1) MLT1K|LTR|ERVL-MaLR 2637 NR_033927 100302691 Hs.209162 NR_033927 ENSG00000224939 LINC00184 HANC|NCRNA00184 long intergenic non-protein coding RNA 184 ncRNA 13-PTNLD9-TUMOR_peak_44255 chr6 26521914 26522167 + 14.37812 NA non-coding (NR_026790, exon 1 of 1) non-coding (NR_026790, exon 1 of 1) 106 NR_026790 493812 Hs.272939 NR_026790 ENSG00000228223 HCG11 bK14H9.3 HLA complex group 11 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_40960 chr5 57158330 57158661 + 14.37812 NA Intergenic Intergenic 36494 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LOC101928539 - uncharacterized LOC101928539 ncRNA 13-PTNLD9-TUMOR_peak_20132 chr16 89509637 89510048 + 14.37812 NA intron (NR_110932, intron 1 of 2) intron (NR_110932, intron 1 of 2) 12516 NR_110931 101927817 Hs.667942 NR_110931 LOC101927817 - uncharacterized LOC101927817 ncRNA 13-PTNLD9-TUMOR_peak_48379 chr7 96027646 96027768 + 14.37654 NA Intergenic L1MA3|LINE|L1 -76248 NR_027662 10165 Hs.489190 NM_014251 HPRD:04837 SLC25A13 ARALAR2|CITRIN|CTLN2 solute carrier family 25 (aspartate/glutamate carrier), member 13 protein-coding 13-PTNLD9-TUMOR_peak_2028 chr1 62850414 62850609 + 14.37654 NA Intergenic Intergenic -51464 NM_001017415 7398 Hs.35086 NM_003368 HPRD:04593 USP1 UBP ubiquitin specific peptidase 1 protein-coding 13-PTNLD9-TUMOR_peak_56416 chrX 118986972 118987279 + 14.37654 NA promoter-TSS (NM_080632) promoter-TSS (NM_080632) -134 NM_023010 65109 Hs.103832 NM_023010 HPRD:02247 UPF3B HUPF3B|MRX62|MRXS14|RENT3B|UPF3X UPF3 regulator of nonsense transcripts homolog B (yeast) protein-coding 13-PTNLD9-TUMOR_peak_26513 chr2 31613209 31613486 + 14.37654 NA intron (NM_000379, intron 6 of 35) L1MC1|LINE|L1 24264 NM_000379 7498 Hs.250 NM_000379 HPRD:06363 XDH XO|XOR xanthine dehydrogenase protein-coding 13-PTNLD9-TUMOR_peak_53927 chr9 91795315 91795452 + 14.37654 NA Intergenic Intergenic -1701 NM_016848 53358 Hs.292737 NM_016848 SHC3 N-Shc|NSHC|RAI|SHCC SHC (Src homology 2 domain containing) transforming protein 3 protein-coding 13-PTNLD9-TUMOR_peak_7534 chr10 65559029 65559240 + 14.37654 NA Intergenic Intergenic 278011 NM_001001330 221035 Hs.499833 NM_001001330 HPRD:16582 REEP3 C10orf74 receptor accessory protein 3 protein-coding 13-PTNLD9-TUMOR_peak_9547 chr11 35915796 35916057 + 14.37654 NA Intergenic Intergenic -49686 NM_174902 143458 Hs.745134 NM_174902 HPRD:14063 LDLRAD3 LRAD3 low density lipoprotein receptor class A domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_18396 chr16 4968777 4969216 + 14.37654 NA intron (NM_002705, intron 1 of 21) intron (NM_002705, intron 1 of 21) 18140 NM_002705 5493 Hs.192233 NM_002705 HPRD:04187 PPL - periplakin protein-coding 13-PTNLD9-TUMOR_peak_40924 chr5 55928231 55928368 + 14.37654 NA Intergenic L1MCc|LINE|L1 -26240 NM_001287053 101928448 Hs.208052 NM_001287053 LOC101928448 - uncharacterized LOC101928448 protein-coding 13-PTNLD9-TUMOR_peak_16334 chr14 77647957 77648161 + 14.37654 NA promoter-TSS (NM_020431) promoter-TSS (NM_020431) -43 NM_020431 57156 Hs.22452 NM_020431 HPRD:16617 TMEM63C C14orf171|CSC1|hsCSC1 transmembrane protein 63C protein-coding 13-PTNLD9-TUMOR_peak_21083 chr17 40477207 40477354 + 14.37654 NA intron (NM_139276, intron 15 of 23) intron (NM_139276, intron 15 of 23) 37206 NM_001288720 6776 Hs.437058 NM_003152 HPRD:03301 STAT5A MGF|STAT5 signal transducer and activator of transcription 5A protein-coding 13-PTNLD9-TUMOR_peak_7862 chr10 81200485 81200763 + 14.37654 NA intron (NM_153367, intron 1 of 3) intron (NM_153367, intron 1 of 3) 4759 NM_153367 219654 Hs.523080 NM_153367 HPRD:08299 ZCCHC24 C10orf56|Z3CXXC8 zinc finger, CCHC domain containing 24 protein-coding 13-PTNLD9-TUMOR_peak_1501 chr1 44324098 44324378 + 14.37334 NA intron (NR_073021, intron 6 of 9) intron (NR_073021, intron 6 of 9) 19944 NR_106727 102464830 NR_106727 MIR6079 hsa-mir-6079 microRNA 6079 ncRNA 13-PTNLD9-TUMOR_peak_29902 chr2 223652617 223653191 + 14.37334 NA Intergenic Intergenic -72828 NM_004457 2181 Hs.655772 NM_004457 ACSL3 ACS3|FACL3|PRO2194 acyl-CoA synthetase long-chain family member 3 protein-coding 13-PTNLD9-TUMOR_peak_39781 chr4 160096754 160096919 + 14.37334 NA Intergenic Intergenic -46790 NR_037459 100500881 NR_037459 miRBase:MI0016089 MIR3688-1 MIR3688 microRNA 3688-1 ncRNA 13-PTNLD9-TUMOR_peak_52043 chr8 129985653 129985911 + 14.37334 NA Intergenic Intergenic 267704 NR_033916 728724 Hs.49902 NR_033916 ENSG00000250400 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 13-PTNLD9-TUMOR_peak_9360 chr11 27340670 27340859 + 14.37334 NA Intergenic L2|LINE|L2 44031 NM_030771 91057 Hs.143733 NM_030771 HPRD:14868 CCDC34 NY-REN-41|RAMA3 coiled-coil domain containing 34 protein-coding 13-PTNLD9-TUMOR_peak_14998 chr13 99428510 99428663 + 14.37334 NA Intergenic Intergenic -23657 NM_005073 6564 Hs.436893 NM_005073 HPRD:02768 SLC15A1 HPECT1|HPEPT1|PEPT1 solute carrier family 15 (oligopeptide transporter), member 1 protein-coding 13-PTNLD9-TUMOR_peak_48412 chr7 97761107 97761506 + 14.36534 NA intron (NM_014916, intron 1 of 13) L1MC5|LINE|L1 25109 NM_014916 22853 Hs.444179 NM_014916 HPRD:13994 LMTK2 AATYK2|BREK|KPI-2|KPI2|LMR2|PPP1R100|cprk lemur tyrosine kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_9462 chr11 33654785 33655209 + 14.36534 NA intron (NM_012194, intron 15 of 19) intron (NM_012194, intron 15 of 19) 67289 NM_001166692 100131378 Hs.709466 NM_001166692 C11orf91 - chromosome 11 open reading frame 91 protein-coding 13-PTNLD9-TUMOR_peak_21787 chr17 62987208 62987371 + 14.35685 NA Intergenic MLT1A|LTR|ERVL-MaLR -15586 NR_026903 201283 Hs.396447 NM_153032 HPRD:08720 AMZ2P1 - archaelysin family metallopeptidase 2 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_21934 chr17 72442904 72443244 + 14.35685 NA exon (NM_018653, exon 4 of 4) exon (NM_018653, exon 4 of 4) 13238 NM_018653 55890 Hs.446438 NM_018653 GPRC5C RAIG-3|RAIG3 G protein-coupled receptor, class C, group 5, member C protein-coding 13-PTNLD9-TUMOR_peak_51000 chr8 58137945 58138279 + 14.35375 NA intron (NR_038235, intron 8 of 9) Tigger1|DNA|TcMar-Tigger 7277 NR_038235 100507651 Hs.371831 NR_038235 ENSG00000253301 LOC100507651 - uncharacterized LOC100507651 ncRNA 13-PTNLD9-TUMOR_peak_23267 chr18 55410378 55410543 + 14.35375 NA intron (NM_005603, intron 1 of 27) intron (NM_005603, intron 1 of 27) 59867 NM_005603 5205 Hs.216623 NM_005603 HPRD:03867 ATP8B1 ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1 ATPase, aminophospholipid transporter, class I, type 8B, member 1 protein-coding 13-PTNLD9-TUMOR_peak_4633 chr1 181111729 181111855 + 14.35375 NA Intergenic Intergenic 54154 NM_016545 51278 Hs.15725 NM_016545 HPRD:06210 IER5 SBBI48 immediate early response 5 protein-coding 13-PTNLD9-TUMOR_peak_7934 chr10 88159715 88160315 + 14.35375 NA Intergenic CpG -33765 NM_017551 2894 Hs.530653 NM_017551 HPRD:17078 GRID1 GluD1 glutamate receptor, ionotropic, delta 1 protein-coding 13-PTNLD9-TUMOR_peak_5725 chr1 228731714 228732072 + 14.35159 NA Intergenic HSAT4|Satellite|centr -31904 NM_001287262 100129094 Hs.730208 NM_001287262 BTNL10 BTN4|BUTR1 butyrophilin-like 10 protein-coding 13-PTNLD9-TUMOR_peak_42634 chr5 149849256 149849487 + 14.35159 NA Intergenic Intergenic 16184 NR_105061 102546298 Hs.570892 NR_105061 LOC102546298 - uncharacterized LOC102546298 ncRNA 13-PTNLD9-TUMOR_peak_11644 chr11 129873401 129873642 + 14.34245 NA promoter-TSS (NM_020228) promoter-TSS (NM_020228) -791 NM_020228 56980 Hs.275086 NM_020228 HPRD:11455 PRDM10 PFM7 PR domain containing 10 protein-coding 13-PTNLD9-TUMOR_peak_18440 chr16 8972491 8972792 + 14.33604 NA Intergenic Intergenic -9772 NM_001278260 23589 Hs.632184 NM_014316 HPRD:08515 CARHSP1 CRHSP-24|CSDC1 calcium regulated heat stable protein 1, 24kDa protein-coding 13-PTNLD9-TUMOR_peak_20374 chr17 7118317 7118573 + 14.33604 NA intron (NM_001365, intron 3 of 21) intron (NM_001365, intron 3 of 21) -1999 NM_001270447 37 Hs.437178 NM_000018 HPRD:01940 ACADVL ACAD6|LCACD|VLCAD acyl-CoA dehydrogenase, very long chain protein-coding 13-PTNLD9-TUMOR_peak_11275 chr11 114067169 114067384 + 14.33604 NA intron (NM_001018011, intron 4 of 6) intron (NM_001018011, intron 4 of 6) -99259 NM_006169 4837 Hs.503911 NM_006169 HPRD:02478 NNMT - nicotinamide N-methyltransferase protein-coding 13-PTNLD9-TUMOR_peak_42027 chr5 131725459 131725663 + 14.33604 NA intron (NM_003060, intron 6 of 9) intron (NM_003060, intron 6 of 9) -19953 NR_110997 553103 Hs.570908 NR_037898 ENSG00000233006 LOC553103 - uncharacterized LOC553103 ncRNA 13-PTNLD9-TUMOR_peak_47896 chr7 73245084 73245467 + 14.33318 NA promoter-TSS (NM_001305) promoter-TSS (NM_001305) 82 NM_001305 1364 Hs.647036 NM_001305 HPRD:04218 CLDN4 CPE-R|CPER|CPETR|CPETR1|WBSCR8|hCPE-R claudin 4 protein-coding 13-PTNLD9-TUMOR_peak_42992 chr5 171057117 171057320 + 14.33316 NA Intergenic CpG -155658 NM_001289970 644994 Hs.591740 NM_001289970 SMIM23 C5orf50 small integral membrane protein 23 protein-coding 13-PTNLD9-TUMOR_peak_6932 chr10 35283723 35283875 + 14.33316 NA Intergenic Intergenic 79459 NM_001198779 8453 Hs.82919 NM_003591 HPRD:06786 CUL2 - cullin 2 protein-coding 13-PTNLD9-TUMOR_peak_43433 chr6 1689505 1689849 + 14.33316 NA intron (NM_001500, intron 9 of 10) intron (NM_001500, intron 9 of 10) 78996 NM_001453 2296 Hs.348883 NM_001453 HPRD:03054 FOXC1 ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3 forkhead box C1 protein-coding 13-PTNLD9-TUMOR_peak_6445 chr10 10134631 10134906 + 14.33316 NA Intergenic LTR16C|LTR|ERVL 34083 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LOC101928298 - uncharacterized LOC101928298 ncRNA 13-PTNLD9-TUMOR_peak_50337 chr8 23193305 23193736 + 14.33316 NA promoter-TSS (NR_038323) promoter-TSS (NR_038323) -201 NR_038323 100507156 Hs.661130 NR_038323 ENSG00000253837 LOC100507156 - uncharacterized LOC100507156 ncRNA 13-PTNLD9-TUMOR_peak_20597 chr17 18865109 18865252 + 14.33316 NA intron (NM_001042450, intron 5 of 14) intron (NM_001042450, intron 5 of 14) 9702 NM_001270648 125206 Hs.462418 NM_152351 HPRD:15394 SLC5A10 SGLT-5|SGLT5 solute carrier family 5 (sodium/sugar cotransporter), member 10 protein-coding 13-PTNLD9-TUMOR_peak_50567 chr8 32669827 32670135 + 14.33316 NA Intergenic Intergenic 90630 NM_001159996 3084 Hs.453951 NM_004495 HPRD:00802 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 13-PTNLD9-TUMOR_peak_28722 chr2 151478482 151478658 + 14.33316 NA Intergenic Intergenic -6841 NR_110246 101929282 Hs.126866 NR_110244 LOC101929282 - uncharacterized LOC101929282 ncRNA 13-PTNLD9-TUMOR_peak_17471 chr15 66246657 66247014 + 14.33316 NA intron (NM_032445, intron 10 of 22) intron (NM_032445, intron 10 of 22) 85038 NM_004663 8766 Hs.321541 NM_004663 HPRD:05715 RAB11A YL8 RAB11A, member RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_7659 chr10 72680338 72680602 + 14.33308 NA Intergenic Intergenic -31927 NM_000281 5092 Hs.3192 NM_000281 HPRD:00523 PCBD1 DCOH|PCBD|PCD|PHS pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha protein-coding 13-PTNLD9-TUMOR_peak_907 chr1 30436074 30436278 + 14.33308 NA Intergenic Intergenic 74283 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LOC101929406 - uncharacterized LOC101929406 ncRNA 13-PTNLD9-TUMOR_peak_29643 chr2 206702522 206702691 + 14.33308 NA Intergenic L5|LINE|RTE 155382 NM_201264 8828 Hs.471200 NM_003872 HPRD:03643 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 13-PTNLD9-TUMOR_peak_23162 chr18 47607421 47607874 + 14.33308 NA intron (NM_001080467, intron 1 of 39) intron (NM_001080467, intron 1 of 39) 45286 NR_036204 100422865 NR_036204 MIR4320 - microRNA 4320 ncRNA 13-PTNLD9-TUMOR_peak_31328 chr20 47158139 47158300 + 14.32609 NA Intergenic Intergenic 169565 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 13-PTNLD9-TUMOR_peak_23518 chr18 77006638 77006818 + 14.32221 NA intron (NM_198531, intron 11 of 29) intron (NM_198531, intron 11 of 29) -149044 NM_001278669 4772 Hs.534074 NM_006162 HPRD:02729 NFATC1 NF-ATC|NFAT2|NFATc nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1 protein-coding 13-PTNLD9-TUMOR_peak_37138 chr3 188012831 188013167 + 14.32032 NA intron (NM_005578, intron 2 of 10) intron (NM_005578, intron 2 of 10) 69806 NM_001167671 4026 Hs.720220 NM_005578 HPRD:02828 LPP - LIM domain containing preferred translocation partner in lipoma protein-coding 13-PTNLD9-TUMOR_peak_39192 chr4 120291694 120291889 + 14.31939 NA Intergenic Intergenic 40024 NR_037596 401149 Hs.448518 NR_037596 LINC01061 - long intergenic non-protein coding RNA 1061 ncRNA 13-PTNLD9-TUMOR_peak_54666 chr9 124292014 124292275 + 14.31939 NA Intergenic Intergenic -29838 NR_003191 2681 Hs.97469 NR_003191 ENSG00000204136 GGTA1P GGTA|GGTA1|GLYT2|a1/3GTP glycoprotein, alpha-galactosyltransferase 1 pseudogene pseudo 13-PTNLD9-TUMOR_peak_41631 chr5 101632003 101632356 + 14.31939 NA promoter-TSS (NM_180991) promoter-TSS (NM_180991) 74 NM_180991 353189 Hs.127648 NM_180991 HPRD:12354 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family, member 4C1 protein-coding 13-PTNLD9-TUMOR_peak_28921 chr2 162885840 162886014 + 14.31939 NA intron (NM_001935, intron 10 of 25) intron (NM_001935, intron 10 of 25) 45125 NM_001935 1803 Hs.368912 NM_001935 HPRD:02187 DPP4 ADABP|ADCP2|CD26|DPPIV|TP103 dipeptidyl-peptidase 4 protein-coding 13-PTNLD9-TUMOR_peak_6810 chr10 30093170 30093385 + 14.31939 NA Intergenic Intergenic -68547 NM_003174 6840 Hs.499209 NM_003174 HPRD:04992 SVIL - supervillin protein-coding 13-PTNLD9-TUMOR_peak_30281 chr20 2083868 2084014 + 14.31939 NA exon (NM_080836, exon 2 of 4) exon (NM_080836, exon 2 of 4) 1413 NM_080836 140901 Hs.100057 NM_080836 HPRD:11612 STK35 CLIK1|STK35L1 serine/threonine kinase 35 protein-coding 13-PTNLD9-TUMOR_peak_39753 chr4 159080345 159080553 + 14.31939 NA intron (NM_016613, intron 2 of 4) intron (NM_016613, intron 2 of 4) 13269 NM_016613 51313 Hs.567498 NM_016613 HPRD:13194 FAM198B AD036|C4orf18 family with sequence similarity 198, member B protein-coding 13-PTNLD9-TUMOR_peak_11870 chr12 4225941 4226134 + 14.31939 NA Intergenic Intergenic -156865 NM_001759 894 Hs.376071 NM_001759 HPRD:00451 CCND2 KIAK0002 cyclin D2 protein-coding 13-PTNLD9-TUMOR_peak_16158 chr14 69822676 69822923 + 14.31752 NA Intergenic Intergenic 42222 NM_004450 2079 Hs.509791 NM_004450 ERH DROER enhancer of rudimentary homolog (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_27888 chr2 103130628 103130781 + 14.31752 NA exon (NM_001011552, exon 8 of 12) exon (NM_001011552, exon 8 of 12) 40942 NM_001011552 389015 Hs.447686 NM_001011552 HPRD:15973 SLC9A4 NHE4 solute carrier family 9, subfamily A (NHE4, cation proton antiporter 4), member 4 protein-coding 13-PTNLD9-TUMOR_peak_54422 chr9 112893827 112893980 + 14.31752 NA intron (NM_001136562, intron 1 of 3) intron (NM_001136562, intron 1 of 3) 6122 NM_001136562 11217 Hs.591908 NM_001004065 ENSG00000241978 AKAP2 AKAP-2|AKAPKL|PRKA2 A kinase (PRKA) anchor protein 2 protein-coding 13-PTNLD9-TUMOR_peak_45165 chr6 45042993 45043254 + 14.31752 NA intron (NM_003599, intron 3 of 10) intron (NM_003599, intron 3 of 10) 122384 NR_030313 693171 NR_030313 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 13-PTNLD9-TUMOR_peak_34247 chr3 36718953 36719218 + 14.31752 NA Intergenic Intergenic 62267 NM_033403 85443 Hs.631907 NM_033403 ENSG00000163673 DCLK3 CLR|DCAMKL3|DCDC3C|DCK3 doublecortin-like kinase 3 protein-coding 13-PTNLD9-TUMOR_peak_8893 chr11 4667330 4667490 + 14.31752 NA intron (NM_152430, intron 1 of 1) intron (NM_152430, intron 1 of 1) 2254 NM_152430 143503 Hs.470038 NM_152430 HPRD:14996 OR51E1 D-GPCR|DGPCR|GPR136|GPR164|OR51E1P|OR52A3P|POGR|PSGR2 olfactory receptor, family 51, subfamily E, member 1 protein-coding 13-PTNLD9-TUMOR_peak_36651 chr3 168707303 168707456 + 14.31752 NA Intergenic Intergenic 87646 NR_109989 100507661 Hs.65918 NR_109989 ENSG00000242268 LOC100507661 - uncharacterized LOC100507661 ncRNA 13-PTNLD9-TUMOR_peak_44499 chr6 30928811 30928939 + 14.31752 NA Intergenic Intergenic 20098 NM_080870 135656 Hs.631993 NM_080870 HPRD:16073 DPCR1 PBLT diffuse panbronchiolitis critical region 1 protein-coding 13-PTNLD9-TUMOR_peak_7404 chr10 54246625 54246780 + 14.31752 NA Intergenic Intergenic -16409 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LINC01468 lnc-MBL2-4 long intergenic non-protein coding RNA 1468 ncRNA 13-PTNLD9-TUMOR_peak_52650 chr9 3746493 3746637 + 14.31752 NA Intergenic Intergenic 78479 NR_121586 101929302 Hs.122828 NR_121586 RFX3-AS1 - RFX3 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_44406 chr6 29646033 29646159 + 14.31752 NA Intergenic Tigger7|DNA|TcMar-Tigger -1165 NM_001109809 346171 Hs.156326 NM_001109809 ENSG00000204644 ZFP57 C6orf40|TNDM1|ZNF698|bA145L22|bA145L22.2 ZFP57 zinc finger protein protein-coding 13-PTNLD9-TUMOR_peak_36152 chr3 139812743 139812882 + 14.31752 NA intron (NM_022131, intron 1 of 16) MER113A|DNA|hAT-Charlie 158785 NM_022131 64084 Hs.158529 NM_022131 CLSTN2 ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma calsyntenin 2 protein-coding 13-PTNLD9-TUMOR_peak_45038 chr6 42660007 42660671 + 14.31530 NA 3' UTR (NM_015255, exon 47 of 47) 3' UTR (NM_015255, exon 47 of 47) 30019 NM_000322 5961 Hs.654489 NM_000322 HPRD:01553 PRPH2 AOFMD|AVMD|CACD2|DS|PRPH|RDS|RP7|TSPAN22|rd2 peripherin 2 (retinal degeneration, slow) protein-coding 13-PTNLD9-TUMOR_peak_49639 chr7 150748245 150748391 + 14.31530 NA exon (NM_004769, exon 6 of 11) exon (NM_004769, exon 6 of 11) 2939 NM_020321 9311 Hs.647113 NM_004769 HPRD:10626 ASIC3 ACCN3|DRASIC|SLNAC1|TNaC1 acid-sensing (proton-gated) ion channel 3 protein-coding 13-PTNLD9-TUMOR_peak_25360 chr19 49655006 49655377 + 14.31255 NA TTS (NR_103842) TTS (NR_103842) 3490 NM_002152 3270 Hs.436885 NM_002152 HPRD:00818 HRC - histidine rich calcium binding protein protein-coding 13-PTNLD9-TUMOR_peak_14558 chr13 32889454 32889666 + 14.30891 NA promoter-TSS (NM_000059) promoter-TSS (NM_000059) -57 NM_000059 675 Hs.34012 NM_000059 HPRD:02554 BRCA2 BRCC2|BROVCA2|FACD|FAD|FAD1|FANCD|FANCD1|GLM3|PNCA2 breast cancer 2, early onset protein-coding 13-PTNLD9-TUMOR_peak_29433 chr2 196478722 196478971 + 14.30891 NA Intergenic Intergenic -42686 NM_001127257 57181 Hs.650158 NM_020342 HPRD:10572 SLC39A10 LZT-Hs2 solute carrier family 39 (zinc transporter), member 10 protein-coding 13-PTNLD9-TUMOR_peak_36630 chr3 165361381 165361628 + 14.30891 NA Intergenic Intergenic 193749 NM_000055 590 Hs.420483 NM_000055 HPRD:01519 BCHE CHE1|CHE2|E1 butyrylcholinesterase protein-coding 13-PTNLD9-TUMOR_peak_34258 chr3 37224948 37225270 + 14.30891 NA Intergenic Intergenic -7258 NM_001134369 9209 Hs.740522 NM_006309 HPRD:10061 LRRFIP2 HUFI-2 leucine rich repeat (in FLII) interacting protein 2 protein-coding 13-PTNLD9-TUMOR_peak_25624 chr19 54492948 54493244 + 14.30891 NA 3' UTR (NM_031895, exon 4 of 4) 3' UTR (NM_031895, exon 4 of 4) -1307 NR_102308 59285 Hs.631560 NM_031897 HPRD:06061 CACNG6 - calcium channel, voltage-dependent, gamma subunit 6 protein-coding 13-PTNLD9-TUMOR_peak_19135 chr16 33331459 33331666 + 14.30288 NA Intergenic Intergenic -32860 NR_033866 390705 Hs.278513 NR_033866 LOC390705 - protein phosphatase 2, regulatory subunit B'', beta pseudogene pseudo 13-PTNLD9-TUMOR_peak_52385 chr8 143690532 143690702 + 14.29454 NA Intergenic Intergenic 5216 NM_015193 23237 Hs.40888 NM_015193 ARC Arg3.1 activity-regulated cytoskeleton-associated protein protein-coding 13-PTNLD9-TUMOR_peak_27604 chr2 90535063 90535210 + 14.29454 NA Intergenic CpG 1312839 NR_027238 654342 Hs.469287 NR_027238 ENSG00000143429 LOC654342 - lymphocyte-specific protein 1 pseudogene pseudo 13-PTNLD9-TUMOR_peak_29497 chr2 201167661 201167854 + 14.28721 NA Intergenic MLT1I|LTR|ERVL-MaLR -2847 NM_015535 26010 Hs.120323 NM_015535 HPRD:10916 SPATS2L DNAPTP6|SGNP spermatogenesis associated, serine-rich 2-like protein-coding 13-PTNLD9-TUMOR_peak_10951 chr11 94800236 94800396 + 14.28721 NA non-coding (NR_103726, exon 1 of 2) non-coding (NR_103726, exon 1 of 2) 275 NR_103726 10929 Hs.476680 NM_032102 SRSF8 DSM-1|SFRS2B|SRP46 serine/arginine-rich splicing factor 8 protein-coding 13-PTNLD9-TUMOR_peak_53518 chr9 70145878 70146021 + 14.28656 NA Intergenic Intergenic 32866 NM_001126334 653427 Hs.714683 NM_001126334 ENSG00000204779 FOXD4L5 bA15J10.2 forkhead box D4-like 5 protein-coding 13-PTNLD9-TUMOR_peak_24229 chr19 15441827 15442167 + 14.28407 NA Intergenic Intergenic 48615 NM_005858 10270 Hs.594496 NM_005858 HPRD:05258 AKAP8 AKAP 95|AKAP-8|AKAP-95|AKAP95 A kinase (PRKA) anchor protein 8 protein-coding 13-PTNLD9-TUMOR_peak_23953 chr19 10755426 10755741 + 14.28407 NA TTS (NM_001145056) TTS (NM_001145056) 8965 NR_024333 147727 Hs.631616 NR_024333 ENSG00000267100 ILF3-AS1 - ILF3 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_54605 chr9 121405437 121405714 + 14.28407 NA Intergenic Intergenic 726164 NM_014618 1620 Hs.532316 NM_014618 HPRD:04181 BRINP1 DBC1|DBCCR1|FAM5A bone morphogenetic protein/retinoic acid inducible neural-specific 1 protein-coding 13-PTNLD9-TUMOR_peak_36542 chr3 158047573 158048094 + 14.28407 NA intron (NM_001271834, intron 4 of 8) L1PA5|LINE|L1 219992 NM_016625 51319 Hs.591283 NM_016625 HPRD:18006 RSRC1 SFRS21|SRrp53 arginine/serine-rich coiled-coil 1 protein-coding 13-PTNLD9-TUMOR_peak_4488 chr1 175524520 175524706 + 14.28407 NA intron (NM_003285, intron 1 of 22) intron (NM_003285, intron 1 of 22) 188139 NM_003285 7143 Hs.659864 NM_003285 HPRD:03589 TNR TN-R tenascin R protein-coding 13-PTNLD9-TUMOR_peak_27918 chr2 106026233 106026497 + 14.28407 NA intron (NM_201557, intron 1 of 5) intron (NM_201557, intron 1 of 5) -10684 NM_001450 2274 Hs.443687 NM_001450 HPRD:04026 FHL2 AAG11|DRAL|FHL-2|SLIM-3|SLIM3 four and a half LIM domains 2 protein-coding 13-PTNLD9-TUMOR_peak_3706 chr1 153336691 153336950 + 14.28227 NA Intergenic Intergenic 6490 NM_002965 6280 Hs.112405 NM_002965 HPRD:00472 S100A9 60B8AG|CAGB|CFAG|CGLB|L1AG|LIAG|MAC387|MIF|MRP14|NIF|P14 S100 calcium binding protein A9 protein-coding 13-PTNLD9-TUMOR_peak_54116 chr9 99182790 99183075 + 14.27992 NA Intergenic Intergenic -2263 NM_153695 195828 Hs.494557 NM_153695 HPRD:18330 ZNF367 AFF29|CDC14B|ZFF29 zinc finger protein 367 protein-coding 13-PTNLD9-TUMOR_peak_54799 chr9 129949810 129950184 + 14.26795 NA intron (NM_014636, intron 11 of 18) intron (NM_014636, intron 11 of 18) -64953 NM_012098 23452 Hs.653262 NM_012098 HPRD:05415 ANGPTL2 ARP2|HARP angiopoietin-like 2 protein-coding 13-PTNLD9-TUMOR_peak_53640 chr9 75443275 75443708 + 14.26795 NA intron (NM_138691, intron 21 of 23) intron (NM_138691, intron 21 of 23) 45534 NR_121180 101927258 Hs.586433 NR_121120 LINC01474 - long intergenic non-protein coding RNA 1474 ncRNA 13-PTNLD9-TUMOR_peak_6070 chr1 241852165 241852595 + 14.26795 NA intron (NM_144625, intron 7 of 26) L1MCa|LINE|L1 36800 NM_144625 128025 Hs.97527 NM_144625 HPRD:13412 WDR64 - WD repeat domain 64 protein-coding 13-PTNLD9-TUMOR_peak_27364 chr2 79897474 79897612 + 14.26795 NA intron (NM_001282597, intron 2 of 18) MER52C|LTR|ERV1 -21058 NR_036231 100422888 NR_036231 miRBase:MI0015877 MIR4264 - microRNA 4264 ncRNA 13-PTNLD9-TUMOR_peak_28282 chr2 121410639 121411014 + 14.26795 NA Intergenic Intergenic -144041 NM_005270 2736 Hs.111867 NM_005270 HPRD:01312 GLI2 HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 13-PTNLD9-TUMOR_peak_6516 chr10 13414025 13414181 + 14.26795 NA Intergenic Intergenic -23805 NM_012247 22929 Hs.124027 NM_012247 HPRD:02944 SEPHS1 SELD|SPS|SPS1 selenophosphate synthetase 1 protein-coding 13-PTNLD9-TUMOR_peak_48382 chr7 96338749 96339276 + 14.26604 NA exon (NM_006304, exon 1 of 3) exon (NM_006304, exon 1 of 3) 191 NM_006304 7979 Hs.489201 NM_006304 SHFM1 DSS1|ECD|SEM1|SHFD1|SHSF1|Shfdg1 split hand/foot malformation (ectrodactyly) type 1 protein-coding 13-PTNLD9-TUMOR_peak_9101 chr11 12562421 12562795 + 14.26604 NA Intergenic Intergenic -133361 NM_021961 7003 Hs.655331 NM_021961 HPRD:01802 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain family member 1 (SV40 transcriptional enhancer factor) protein-coding 13-PTNLD9-TUMOR_peak_32596 chr21 47167823 47168148 + 14.26604 NA Intergenic Intergenic 88348 NR_038876 100129027 Hs.689591 NR_038876 ENSG00000205424 LOC100129027 - uncharacterized LOC100129027 ncRNA 13-PTNLD9-TUMOR_peak_52945 chr9 26261982 26262224 + 14.26604 NA Intergenic LTR26|LTR|ERV1 195430 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 13-PTNLD9-TUMOR_peak_29211 chr2 178557615 178557776 + 14.26604 NA intron (NM_001077197, intron 16 of 20) intron (NM_001077197, intron 16 of 20) -74001 NM_152275 92104 Hs.128384 NM_152275 TTC30A - tetratricopeptide repeat domain 30A protein-coding 13-PTNLD9-TUMOR_peak_17211 chr15 45353529 45353821 + 14.26604 NA intron (NR_034039, intron 4 of 8) intron (NR_034039, intron 4 of 8) 38373 NR_034039 6652 Hs.878 NM_003104 SORD HEL-S-95n|SORD1 sorbitol dehydrogenase protein-coding 13-PTNLD9-TUMOR_peak_28926 chr2 162942197 162942417 + 14.26604 NA Intergenic MER34-int|LTR|ERV1 -11255 NM_001935 1803 Hs.368912 NM_001935 HPRD:02187 DPP4 ADABP|ADCP2|CD26|DPPIV|TP103 dipeptidyl-peptidase 4 protein-coding 13-PTNLD9-TUMOR_peak_19713 chr16 71053004 71053347 + 14.26604 NA intron (NM_001270974, intron 22 of 85) intron (NM_001270974, intron 22 of 85) 211450 NM_001270974 54768 Hs.461229 NM_017558 HPRD:11042 HYDIN CILD5|HYDIN1|HYDIN2|PPP1R31 HYDIN, axonemal central pair apparatus protein protein-coding 13-PTNLD9-TUMOR_peak_6407 chr10 6790952 6791147 + 14.26604 NA Intergenic MER21C|LTR|ERVL 30093 NR_108074 100652997 Hs.255086 NR_108074 LINC00706 - long intergenic non-protein coding RNA 706 ncRNA 13-PTNLD9-TUMOR_peak_52618 chr9 1708299 1708554 + 14.26604 NA Intergenic Intergenic -306793 NM_003070 6595 Hs.298990 NM_003070 HPRD:02483 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 13-PTNLD9-TUMOR_peak_32161 chr21 34576271 34576624 + 14.26604 NA Intergenic Intergenic -25753 NM_001289126 3455 Hs.708195 NM_000874 HPRD:03850 IFNAR2 IFN-R|IFN-alpha-REC|IFNABR|IFNARB interferon (alpha, beta and omega) receptor 2 protein-coding 13-PTNLD9-TUMOR_peak_219 chr1 6784725 6785162 + 14.26391 NA intron (NR_104620, intron 1 of 1) intron (NR_104620, intron 1 of 1) 138 NR_104620 100505887 Hs.250839 NR_104620 ENSG00000228750 LOC100505887 - uncharacterized LOC100505887 ncRNA 13-PTNLD9-TUMOR_peak_32684 chr22 18495372 18495638 + 14.25887 NA intron (NM_015241, intron 1 of 31) intron (NM_015241, intron 1 of 31) 11820 NM_015241 57553 Hs.528024 NM_015241 ENSG00000243156 MICAL3 MICAL-3 microtubule associated monooxygenase, calponin and LIM domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_30844 chr20 33412281 33412429 + 14.25887 NA intron (NM_001242539, intron 1 of 13) intron (NM_001242539, intron 1 of 13) 1078 NM_001242539 23054 Hs.368971 NM_014071 HPRD:05599 NCOA6 AIB3|ASC2|NRC|PRIP|RAP250|TRBP nuclear receptor coactivator 6 protein-coding 13-PTNLD9-TUMOR_peak_42298 chr5 139365376 139365602 + 14.25887 NA intron (NM_001184935, intron 1 of 7) MIR3|SINE|MIR 57395 NM_004883 9542 Hs.408515 NM_004883 HPRD:04821 NRG2 DON1|HRG2|NTAK neuregulin 2 protein-coding 13-PTNLD9-TUMOR_peak_21032 chr17 39110263 39110467 + 14.25887 NA Intergenic Intergenic 12779 NM_213656 390792 Hs.28467 NM_213656 HPRD:13750 KRT39 CK-39|K39|KA35 keratin 39 protein-coding 13-PTNLD9-TUMOR_peak_23396 chr18 61603450 61603631 + 14.25887 NA Intergenic CpG -13048 NM_001123366 284293 Hs.721604 NM_001123366 ENSG00000221887 HMSD ACC-6|C18orf53|HSMD-v histocompatibility (minor) serpin domain containing protein-coding 13-PTNLD9-TUMOR_peak_653 chr1 23016068 23016327 + 14.25887 NA Intergenic Intergenic -21134 NM_004442 2048 Hs.523329 NM_004442 HPRD:02997 EPHB2 CAPB|DRT|EK5|EPHT3|ERK|Hek5|PCBC|Tyro5 EPH receptor B2 protein-coding 13-PTNLD9-TUMOR_peak_45320 chr6 52971943 52972162 + 14.25887 NA Intergenic MER117|DNA|hAT-Charlie 36281 NM_012347 26268 Hs.216653 NM_012347 HPRD:16434 FBXO9 FBX9|NY-REN-57|VCIA1|dJ341E18.2 F-box protein 9 protein-coding 13-PTNLD9-TUMOR_peak_50356 chr8 23577887 23578165 + 14.25887 NA Intergenic Intergenic -13915 NM_001136271 137814 Hs.532654 NM_001136271 ENSG00000180053 NKX2-6 CSX2|CTHM|NKX2F|NKX4-2 NK2 homeobox 6 protein-coding 13-PTNLD9-TUMOR_peak_11303 chr11 115812283 115812436 + 14.25887 NA Intergenic Intergenic -181441 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 13-PTNLD9-TUMOR_peak_23648 chr19 2059757 2060170 + 14.25330 NA Intergenic Intergenic -8720 NM_017572 2872 Hs.515032 NM_017572 HPRD:05459 MKNK2 GPRK7|MNK2 MAP kinase interacting serine/threonine kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_6489 chr10 12307697 12307947 + 14.25330 NA Intergenic Intergenic -69679 NM_014142 11164 Hs.555956 NM_014142 HPRD:14851 NUDT5 YSA1|YSA1H|YSAH1|hYSAH1 nudix (nucleoside diphosphate linked moiety X)-type motif 5 protein-coding 13-PTNLD9-TUMOR_peak_436 chr1 11968215 11968768 + 14.25136 NA Intergenic Intergenic 17994 NM_138346 90231 Hs.520094 NM_138346 HPRD:14576 KIAA2013 - KIAA2013 protein-coding 13-PTNLD9-TUMOR_peak_37343 chr3 194488255 194488496 + 14.24982 NA intron (NR_037891, intron 3 of 3) intron (NR_037891, intron 3 of 3) 59225 NR_037891 100507391 Hs.590099 NR_037891 ENSG00000237222 LOC100507391 - uncharacterized LOC100507391 ncRNA 13-PTNLD9-TUMOR_peak_36965 chr3 183952205 183952388 + 14.24938 NA intron (NM_138345, intron 5 of 18) intron (NM_138345, intron 5 of 18) 3979 NM_138345 90113 Hs.584997 NM_138345 ENSG00000145198 VWA5B2 - von Willebrand factor A domain containing 5B2 protein-coding 13-PTNLD9-TUMOR_peak_45875 chr6 109704209 109704387 + 14.24893 NA promoter-TSS (NM_001142401) promoter-TSS (NM_001142401) -536 NM_001142401 8763 Hs.520313 NM_006016 HPRD:04523 CD164 MGC-24|MUC-24|endolyn CD164 molecule, sialomucin protein-coding 13-PTNLD9-TUMOR_peak_23126 chr18 46149227 46149758 + 14.24893 NA intron (NM_014772, intron 2 of 11) intron (NM_014772, intron 2 of 11) -47479 NR_039897 100616366 NR_039897 MIR4743 - microRNA 4743 ncRNA 13-PTNLD9-TUMOR_peak_31738 chr20 58515841 58516028 + 14.24893 NA promoter-TSS (NM_006242) promoter-TSS (NM_006242) 490 NM_001190827 63939 Hs.54973 NM_022106 HPRD:12758 FAM217B C20orf177|dJ551D2.5 family with sequence similarity 217, member B protein-coding 13-PTNLD9-TUMOR_peak_17353 chr15 58761979 58762376 + 14.23598 NA intron (NR_120338, intron 2 of 2) AluJb|SINE|Alu 28757 NR_120338 101928694 Hs.655781 NR_120338 ENSG00000259293 LOC101928694 - uncharacterized LOC101928694 ncRNA 13-PTNLD9-TUMOR_peak_14025 chr12 120666749 120666910 + 14.22088 NA intron (NM_001243756, intron 1 of 10) intron (NM_001243756, intron 1 of 10) 21135 NM_025157 5829 Hs.446336 NM_002859 ENSG00000089159 PXN - paxillin protein-coding 13-PTNLD9-TUMOR_peak_52498 chr8 145181463 145181603 + 14.21906 NA Intergenic Intergenic -11139 NM_016458 51236 Hs.300224 NM_016458 HPRD:17423 HGH1 BRP16|BRP16L|C8orf30A|C8orf30B|FAM203A|FAM203B HGH1 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_35342 chr3 111584002 111584324 + 14.21906 NA intron (NM_001134439, intron 1 of 17) intron (NM_001134439, intron 1 of 17) 5595 NM_001134439 90102 Hs.603252 NM_145753 HPRD:06611 PHLDB2 LL5b|LL5beta pleckstrin homology-like domain, family B, member 2 protein-coding 13-PTNLD9-TUMOR_peak_37923 chr4 9002348 9002477 + 14.21906 NA Intergenic CpG 50935 NM_001040071 650293 Hs.535167 NM_001040071 LOC650293 - seven transmembrane helix receptor protein-coding 13-PTNLD9-TUMOR_peak_36211 chr3 141549465 141549689 + 14.21906 NA Intergenic Intergenic -45893 NM_001679 483 Hs.477789 NM_001679 HPRD:03521 ATP1B3 ATPB-3|CD298 ATPase, Na+/K+ transporting, beta 3 polypeptide protein-coding 13-PTNLD9-TUMOR_peak_42840 chr5 159339468 159339728 + 14.21906 NA Intergenic Intergenic -4142 NM_000679 147 Hs.368632 NM_000679 ADRA1B ADRA1|ALPHA1BAR adrenoceptor alpha 1B protein-coding 13-PTNLD9-TUMOR_peak_16884 chr15 29762552 29762766 + 14.21906 NA intron (NM_015307, intron 1 of 10) intron (NM_015307, intron 1 of 10) 100268 NM_015307 23359 Hs.383564 NM_015307 ENSG00000104059 FAM189A1 TMEM228 family with sequence similarity 189, member A1 protein-coding 13-PTNLD9-TUMOR_peak_30615 chr20 23427244 23427479 + 14.21341 NA Intergenic Intergenic 6121 NM_130794 140880 Hs.128100 NM_080830 HPRD:16767 CST11 CST8L|CTES2|SC13|dJ322G13.6 cystatin 11 protein-coding 13-PTNLD9-TUMOR_peak_10910 chr11 92930908 92931391 + 14.21341 NA promoter-TSS (NM_152313) promoter-TSS (NM_152313) -8 NM_152313 120103 Hs.148766 NM_152313 SLC36A4 PAT4 solute carrier family 36 (proton/amino acid symporter), member 4 protein-coding 13-PTNLD9-TUMOR_peak_21218 chr17 43370840 43371088 + 14.21341 NA intron (NM_003954, intron 1 of 15) intron (NM_003954, intron 1 of 15) 23466 NM_003954 9020 Hs.404183 NM_003954 MAP3K14 FTDCR1B|HS|HSNIK|NIK mitogen-activated protein kinase kinase kinase 14 protein-coding 13-PTNLD9-TUMOR_peak_677 chr1 23920196 23920387 + 14.21341 NA Intergenic Intergenic -33533 NR_027042 259283 Hs.523369 NR_027042 ENSG00000197880 MDS2 - myelodysplastic syndrome 2 translocation associated ncRNA 13-PTNLD9-TUMOR_peak_30158 chr2 240366044 240366359 + 14.21341 NA Intergenic Intergenic -43558 NM_006037 9759 Hs.20516 NM_006037 HPRD:05610 HDAC4 AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA histone deacetylase 4 protein-coding 13-PTNLD9-TUMOR_peak_43399 chr6 1071919 1072306 + 14.21341 NA intron (NR_027115, intron 1 of 4) intron (NR_027115, intron 1 of 4) 29455 NR_027116 285768 Hs.209463 NR_027115 LOC285768 - uncharacterized LOC285768 ncRNA 13-PTNLD9-TUMOR_peak_1543 chr1 45060880 45061137 + 14.21341 NA intron (NM_018150, intron 2 of 14) intron (NM_018150, intron 2 of 14) 49843 NR_049849 100847089 NR_049849 MIR5584 - microRNA 5584 ncRNA 13-PTNLD9-TUMOR_peak_2148 chr1 68316391 68316631 + 14.21341 NA intron (NR_040077, intron 1 of 9) intron (NR_040077, intron 1 of 9) -17356 NM_018841 55970 Hs.431101 NM_018841 HPRD:13592 GNG12 - guanine nucleotide binding protein (G protein), gamma 12 protein-coding 13-PTNLD9-TUMOR_peak_1357 chr1 41853369 41853542 + 14.21341 NA Intergenic Intergenic 25852 NM_001291281 100132074 Hs.559677 NM_001291281 ENSG00000204060 FOXO6 - forkhead box O6 protein-coding 13-PTNLD9-TUMOR_peak_10984 chr11 95888769 95889043 + 14.21250 NA intron (NM_032427, intron 1 of 4) intron (NM_032427, intron 1 of 4) -185696 NR_036125 100422991 NR_036125 miRBase:MI0014197 MIR1260B - microRNA 1260b ncRNA 13-PTNLD9-TUMOR_peak_54576 chr9 118435389 118435666 + 14.21250 NA Intergenic Intergenic 70991 NR_109805 101928775 Hs.522362 NR_109805 LOC101928775 - uncharacterized LOC101928775 ncRNA 13-PTNLD9-TUMOR_peak_45049 chr6 42858118 42858709 + 14.21250 NA exon (NM_001008739, exon 1 of 1) exon (NM_001008739, exon 1 of 1) 141 NM_001008739 441150 Hs.571098 NM_001008739 HPRD:17403 C6orf226 - chromosome 6 open reading frame 226 protein-coding 13-PTNLD9-TUMOR_peak_19712 chr16 71043561 71043990 + 14.20412 NA intron (NM_001270974, intron 23 of 85) MLT1D|LTR|ERVL-MaLR -208714 NM_018052 55697 Hs.445061 NM_018052 HPRD:07660 VAC14 ArPIKfyve|TAX1BP2|TRX Vac14 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_47448 chr7 48031477 48031613 + 14.20412 NA intron (NM_001284350, intron 9 of 10) intron (NM_001284350, intron 9 of 10) -12323 NR_037917 3364 Hs.152983 NM_004507 HPRD:04787 HUS1 hHUS1 HUS1 checkpoint homolog (S. pombe) protein-coding 13-PTNLD9-TUMOR_peak_10781 chr11 81805220 81805394 + 14.20412 NA intron (NR_120571, intron 5 of 7) L2c|LINE|L2 -203429 NR_036186 100422823 NR_036186 miRBase:MI0015831 MIR4300 - microRNA 4300 ncRNA 13-PTNLD9-TUMOR_peak_13521 chr12 96043233 96043471 + 14.20412 NA intron (NR_077225, intron 1 of 4) intron (NR_077225, intron 1 of 4) 321 NR_077225 100132594 Hs.676211 NR_077225 ENSG00000257150 PGAM1P5 - phosphoglycerate mutase 1 pseudogene 5 pseudo 13-PTNLD9-TUMOR_peak_41644 chr5 102553939 102554146 + 14.20412 NA Intergenic MIRc|SINE|MIR -40400 NM_033211 90355 Hs.482976 NM_033211 HPRD:12383 C5orf30 - chromosome 5 open reading frame 30 protein-coding 13-PTNLD9-TUMOR_peak_451 chr1 12446302 12446437 + 14.20412 NA exon (NM_018156, exon 59 of 69) exon (NM_018156, exon 59 of 69) -120931 NR_003025 677885 Hs.658450 NR_003025 SNORA59A ACA59 small nucleolar RNA, H/ACA box 59A snoRNA 13-PTNLD9-TUMOR_peak_18020 chr15 93606710 93606920 + 14.20412 NA intron (NM_001166286, intron 1 of 2) intron (NM_001166286, intron 1 of 2) 9574 NM_001166286 56963 Hs.271277 NM_020211 HPRD:09560 RGMA RGM repulsive guidance molecule family member a protein-coding 13-PTNLD9-TUMOR_peak_50528 chr8 30142037 30142228 + 14.20412 NA Intergenic Intergenic -33919 NR_039605 100616190 NR_039605 MIR548O2 - microRNA 548o-2 ncRNA 13-PTNLD9-TUMOR_peak_283 chr1 8457047 8457323 + 14.20412 NA intron (NM_001042682, intron 2 of 12) MIR|SINE|MIR 26562 NM_001042682 473 Hs.463041 NM_012102 HPRD:05566 RERE ARG|ARP|ATN1L|DNB1 arginine-glutamic acid dipeptide (RE) repeats protein-coding 13-PTNLD9-TUMOR_peak_1040 chr1 34279877 34280041 + 14.20412 NA intron (NM_052896, intron 9 of 69) L2|LINE|L2 -46117 NM_145205 127540 Hs.568628 NM_145205 HPRD:14038 HMGB4 dJ1007G16.5 high mobility group box 4 protein-coding 13-PTNLD9-TUMOR_peak_19649 chr16 69111272 69111448 + 14.20412 NA intron (NM_024562, intron 17 of 17) L2a|LINE|L2 -28107 NM_001199280 3038 Hs.592069 NM_005329 HPRD:03889 HAS3 - hyaluronan synthase 3 protein-coding 13-PTNLD9-TUMOR_peak_52279 chr8 139926705 139926881 + 14.20128 NA promoter-TSS (NM_152888) promoter-TSS (NM_152888) -557 NM_152888 169044 Hs.117169 NM_152888 HPRD:09885 COL22A1 - collagen, type XXII, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_36143 chr3 139483890 139484111 + 14.20128 NA Intergenic MIRb|SINE|MIR -87115 NM_178177 349565 Hs.208673 NM_178177 HPRD:16370 NMNAT3 PNAT-3|PNAT3 nicotinamide nucleotide adenylyltransferase 3 protein-coding 13-PTNLD9-TUMOR_peak_43329 chr5 179911390 179911700 + 14.20128 NA Intergenic Intergenic -9872 NM_015455 57472 Hs.608380 NM_015455 HPRD:12341 CNOT6 CCR4|Ccr4a CCR4-NOT transcription complex, subunit 6 protein-coding 13-PTNLD9-TUMOR_peak_7828 chr10 79702853 79703384 + 14.20128 NA Intergenic L2b|LINE|L2 16548 NR_024585 100128292 Hs.547908 NR_024585 DLG5-AS1 - DLG5 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_32435 chr21 43938456 43938650 + 14.20128 NA 5' UTR (NM_018964, exon 3 of 21) 5' UTR (NM_018964, exon 3 of 21) 18811 NM_018964 54020 Hs.547009 NM_018964 HPRD:10479 SLC37A1 G3PP solute carrier family 37 (glucose-6-phosphate transporter), member 1 protein-coding 13-PTNLD9-TUMOR_peak_5458 chr1 221631907 221632058 + 14.20128 NA Intergenic Intergenic -122344 NR_024236 400804 Hs.722626 NR_024236 HPRD:17386 C1orf140 - uncharacterized LOC400804 ncRNA 13-PTNLD9-TUMOR_peak_42433 chr5 142237034 142237278 + 14.20128 NA intron (NM_015071, intron 1 of 22) intron (NM_015071, intron 1 of 22) 11319 NR_046680 100874239 Hs.570896 NR_046680 ENSG00000226272 ARHGAP26-AS1 - ARHGAP26 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_38216 chr4 40257373 40257500 + 14.20128 NA Intergenic MIRc|SINE|MIR -51766 NR_121641 101060498 Hs.351492 NR_121640 ENSG00000249241 LOC101060498 - uncharacterized LOC101060498 ncRNA 13-PTNLD9-TUMOR_peak_42259 chr5 138598446 138598612 + 14.20128 NA Intergenic Intergenic -10912 NM_001282278 9782 Hs.268939 NM_018834 HPRD:05270 MATR3 ALS21|MPD2|VCPDM matrin 3 protein-coding 13-PTNLD9-TUMOR_peak_40941 chr5 56497912 56498314 + 14.20128 NA intron (NM_001203246, intron 2 of 10) intron (NM_001203246, intron 2 of 10) -11788 NM_001127236 65056 Hs.444279 NM_022913 HPRD:16333 GPBP1 GPBP|SSH6|VASCULIN GC-rich promoter binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_37887 chr4 8430070 8430383 + 14.20128 NA intron (NM_003501, intron 1 of 17) CpG 12226 NM_001101667 8310 Hs.479122 NM_003501 HPRD:04552 ACOX3 - acyl-CoA oxidase 3, pristanoyl protein-coding 13-PTNLD9-TUMOR_peak_69 chr1 1185628 1185790 + 14.18781 NA Intergenic LTR13|LTR|ERVK -3607 NM_001014980 388581 Hs.197613 NM_001014980 ENSG00000184163 FAM132A C1QDC2|C1QTNF12|CTRP12 family with sequence similarity 132, member A protein-coding 13-PTNLD9-TUMOR_peak_9557 chr11 36383573 36383856 + 14.18781 NA intron (NM_001160167, intron 1 of 8) intron (NM_001160167, intron 1 of 8) -13821 NM_024841 79899 Hs.19987 NM_024841 HPRD:07854 PRR5L PROTOR2 proline rich 5 like protein-coding 13-PTNLD9-TUMOR_peak_22907 chr18 32559016 32559403 + 14.18781 NA intron (NM_001143827, intron 1 of 7) intron (NM_001143827, intron 1 of 7) 1001 NM_001143827 10982 Hs.532824 NM_014268 HPRD:16157 MAPRE2 EB1|EB2|RP1 microtubule-associated protein, RP/EB family, member 2 protein-coding 13-PTNLD9-TUMOR_peak_26720 chr2 43395953 43396124 + 14.18781 NA Intergenic Intergenic 57707 NM_006887 678 Hs.503093 NM_006887 HPRD:18319 ZFP36L2 BRF2|ERF-2|ERF2|RNF162C|TIS11D ZFP36 ring finger protein-like 2 protein-coding 13-PTNLD9-TUMOR_peak_26836 chr2 47167578 47167778 + 14.18240 NA promoter-TSS (NM_020458) promoter-TSS (NM_020458) -635 NM_020458 57217 Hs.370603 NM_020458 HPRD:18239 TTC7A MINAT|TTC7 tetratricopeptide repeat domain 7A protein-coding 13-PTNLD9-TUMOR_peak_46435 chr6 159270973 159271217 + 14.17558 NA intron (NR_028496, intron 2 of 2) intron (NR_028496, intron 2 of 2) 7569 NR_028496 202459 Hs.487035 NM_145303 HPRD:14130 OSTCP1 DC2L|OSTCL oligosaccharyltransferase complex subunit pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_20091 chr16 88803769 88804066 + 14.17512 NA intron (NM_001142864, intron 10 of 50) CpG -5258 NR_120387 339059 Hs.449817 NR_120387 HPRD:08282 LOC339059 - uncharacterized LOC339059 ncRNA 13-PTNLD9-TUMOR_peak_23152 chr18 47089663 47089851 + 14.17512 NA intron (NM_006033, intron 1 of 9) intron (NM_006033, intron 1 of 9) 1330 NM_006033 9388 Hs.465102 NM_006033 HPRD:04730 LIPG EDL|EL|PRO719 lipase, endothelial protein-coding 13-PTNLD9-TUMOR_peak_8560 chr10 126753285 126753666 + 14.17512 NA intron (NM_001290214, intron 2 of 10) intron (NM_001290214, intron 2 of 10) -32036 NR_036178 100423041 NR_036178 MIR4296 - microRNA 4296 ncRNA 13-PTNLD9-TUMOR_peak_35842 chr3 128945361 128945484 + 14.17512 NA Intergenic Intergenic -23031 NM_016128 22820 Hs.518250 NM_016128 HPRD:09887 COPG1 COPG coatomer protein complex, subunit gamma 1 protein-coding 13-PTNLD9-TUMOR_peak_48758 chr7 106300577 106300785 + 14.17269 NA exon (NM_175884, exon 1 of 1) exon (NM_175884, exon 1 of 1) 953 NM_175884 168455 Hs.29692 NM_175884 HPRD:08202 CCDC71L C7orf74 coiled-coil domain containing 71-like protein-coding 13-PTNLD9-TUMOR_peak_32802 chr22 20863707 20863938 + 14.17269 NA intron (NM_001293237, intron 1 of 16) intron (NM_001293237, intron 1 of 16) 1487 NM_001293237 51586 Hs.517421 NM_015889 HPRD:12117 MED15 ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7 mediator complex subunit 15 protein-coding 13-PTNLD9-TUMOR_peak_42912 chr5 167744793 167744972 + 14.17269 NA intron (NM_015238, intron 1 of 22) intron (NM_015238, intron 1 of 22) 25817 NM_001161662 23286 Hs.484047 NM_015238 HPRD:10033 WWC1 HBEBP3|HBEBP36|KIBRA|MEMRYQTL|PPP1R168 WW and C2 domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_17203 chr15 45123040 45123309 + 14.17148 NA Intergenic Intergenic 94614 NM_001301145 140691 Hs.745248 NM_080745 HPRD:11518 TRIM69 HSD-34|HSD34|RNF36|Trif tripartite motif containing 69 protein-coding 13-PTNLD9-TUMOR_peak_31450 chr20 49241194 49241763 + 14.17148 NA intron (NM_080829, intron 2 of 21) intron (NM_080829, intron 2 of 21) 11977 NM_080829 140876 Hs.372578 NM_080829 HPRD:12757 FAM65C C20orf175|C20orf176|dJ530I15.2|dJ530I15.3 family with sequence similarity 65, member C protein-coding 13-PTNLD9-TUMOR_peak_53525 chr9 70396356 70396499 + 14.17085 NA Intergenic Intergenic -21503 NR_121570 101928381 Hs.708686 NR_121570 LOC101928381 - uncharacterized LOC101928381 ncRNA 13-PTNLD9-TUMOR_peak_3663 chr1 152009428 152009601 + 14.16219 NA promoter-TSS (NM_005620) promoter-TSS (NM_005620) -3 NM_005620 6282 Hs.417004 NM_005620 HPRD:04385 S100A11 HEL-S-43|MLN70|S100C S100 calcium binding protein A11 protein-coding 13-PTNLD9-TUMOR_peak_26801 chr2 46191387 46191698 + 14.16122 NA intron (NM_005400, intron 2 of 14) intron (NM_005400, intron 2 of 14) 312499 NM_005400 5581 Hs.580351 NM_005400 HPRD:01500 PRKCE PKCE|nPKC-epsilon protein kinase C, epsilon protein-coding 13-PTNLD9-TUMOR_peak_7228 chr10 47022676 47022856 + 14.16122 NA Intergenic MER5B|DNA|hAT-Charlie 29220 NM_014696 9721 Hs.523375 NM_014696 GPRIN2 GRIN2|KIAA0514 G protein regulated inducer of neurite outgrowth 2 protein-coding 13-PTNLD9-TUMOR_peak_20589 chr17 18585595 18585817 + 14.16122 NA promoter-TSS (NM_001145045) promoter-TSS (NM_001145045) -134 NM_001145045 729288 Hs.534279 NM_001145045 ENSG00000249459 ZNF286B ZNF286C|ZNF286L|ZNF590 zinc finger protein 286B protein-coding 13-PTNLD9-TUMOR_peak_31695 chr20 56592333 56592489 + 14.16122 NA Intergenic Intergenic 121961 NR_039757 100616353 NR_039757 miRBase:MI0016899 MIR4532 - microRNA 4532 ncRNA 13-PTNLD9-TUMOR_peak_5454 chr1 221593006 221593390 + 14.16122 NA Intergenic Intergenic -83560 NR_024236 400804 Hs.722626 NR_024236 HPRD:17386 C1orf140 - uncharacterized LOC400804 ncRNA 13-PTNLD9-TUMOR_peak_35626 chr3 124147890 124148317 + 14.16122 NA intron (NM_001024660, intron 15 of 59) intron (NM_001024660, intron 15 of 59) 54924 NR_106731 102464832 NR_106731 MIR6083 hsa-mir-6083 microRNA 6083 ncRNA 13-PTNLD9-TUMOR_peak_8397 chr10 116697849 116698019 + 14.16122 NA promoter-TSS (NM_139169) promoter-TSS (NM_139169) -18 NM_139169 142940 Hs.21187 NM_139169 HPRD:18229 TRUB1 PUS4 TruB pseudouridine (psi) synthase family member 1 protein-coding 13-PTNLD9-TUMOR_peak_25243 chr19 47860230 47860421 + 14.16122 NA intron (NM_014681, intron 3 of 16) FLAM_C|SINE|Alu 7787 NM_014681 9704 Hs.151706 NM_014681 HPRD:13144 DHX34 DDX34|HRH1 DEAH (Asp-Glu-Ala-His) box polypeptide 34 protein-coding 13-PTNLD9-TUMOR_peak_3423 chr1 147931147 147931485 + 14.14537 NA intron (NR_102404, intron 17 of 18).2 CpG 24103 NM_001135789 653598 Hs.534674 NM_001135789 ENSG00000198161 PPIAL4C COAS-2 peptidylprolyl isomerase A (cyclophilin A)-like 4C protein-coding 13-PTNLD9-TUMOR_peak_19459 chr16 57858929 57859147 + 14.14289 NA Intergenic Intergenic 14489 NM_001278081 388282 Hs.434720 NM_001278081 LOC388282 - uncharacterized LOC388282 protein-coding 13-PTNLD9-TUMOR_peak_22957 chr18 34999326 34999601 + 14.14289 NA intron (NM_001025087, intron 2 of 12) intron (NM_001025087, intron 2 of 12) 146537 NM_001025089 56853 Hs.435976 NM_020180 HPRD:12534 CELF4 BRUNOL-4|BRUNOL4 CUGBP, Elav-like family member 4 protein-coding 13-PTNLD9-TUMOR_peak_6619 chr10 20163843 20163970 + 14.14289 NA intron (NM_001282736, intron 1 of 12) L3|LINE|CR1 58534 NM_032812 84898 Hs.99472 NM_032812 HPRD:08440 PLXDC2 TEM7R plexin domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_33390 chr22 43391193 43391543 + 14.14289 NA intron (NM_001184970, intron 1 of 10) intron (NM_001184970, intron 1 of 10) 19816 NM_001184970 11252 Hs.162877 NM_007229 HPRD:05390 PACSIN2 SDPII protein kinase C and casein kinase substrate in neurons 2 protein-coding 13-PTNLD9-TUMOR_peak_33074 chr22 30176789 30176945 + 14.14289 NA Intergenic Intergenic 13509 NM_001003684 29796 Hs.284292 NM_013387 HPRD:13691 UQCR10 HSPC051|HSPC151|QCR9|UCCR7.2|UCRC ubiquinol-cytochrome c reductase, complex III subunit X protein-coding 13-PTNLD9-TUMOR_peak_19694 chr16 70498371 70498663 + 14.14289 NA intron (NM_145059, intron 3 of 23) AluSx|SINE|Alu 10019 NM_145059 197258 Hs.7907 NM_145059 HPRD:16365 FUK 1110046B12Rik fucokinase protein-coding 13-PTNLD9-TUMOR_peak_30133 chr2 239112247 239112458 + 14.14289 NA promoter-TSS (NM_030768) promoter-TSS (NM_030768) -28 NM_030768 80895 Hs.92033 NM_030768 HPRD:17147 ILKAP ILKAP2|ILKAP3|PP2C-DELTA integrin-linked kinase-associated serine/threonine phosphatase protein-coding 13-PTNLD9-TUMOR_peak_43025 chr5 171986275 171986442 + 14.14289 NA Intergenic Intergenic -81918 NM_001142651 54492 Hs.91521 NM_001142651 ENSG00000214357 NEURL1B NEURL3|hNeur2|neur2 neuralized E3 ubiquitin protein ligase 1B protein-coding 13-PTNLD9-TUMOR_peak_10109 chr11 63366735 63366948 + 14.14289 NA intron (NM_001128203, intron 2 of 4) intron (NM_001128203, intron 2 of 4) 15068 NM_007069 11145 Hs.502775 NM_007069 HPRD:13671 PLA2G16 AdPLA|H-REV107-1|HRASLS3|HREV107|HREV107-1|HREV107-3|HRSL3 phospholipase A2, group XVI protein-coding 13-PTNLD9-TUMOR_peak_31575 chr20 52422431 52422647 + 14.14289 NA Intergenic L2b|LINE|L2 69709 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_6567 chr10 16523399 16523687 + 14.14289 NA intron (NM_030664, intron 2 of 5) intron (NM_030664, intron 2 of 5) 40461 NM_001010908 389941 Hs.676792 NM_001010908 HPRD:16632 C1QL3 C1QTNF13|C1ql|CTRP13|K100 complement component 1, q subcomponent-like 3 protein-coding 13-PTNLD9-TUMOR_peak_11386 chr11 118938276 118938475 + 14.14289 NA promoter-TSS (NM_021729) promoter-TSS (NM_021729) -88 NM_001290185 55823 Hs.234282 NM_021729 HPRD:12258 VPS11 END1|PEP5|RNF108|hVPS11 vacuolar protein sorting 11 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_29017 chr2 169672961 169673198 + 14.14289 NA intron (NM_001171632, intron 2 of 14) L2c|LINE|L2 13972 NM_052946 115677 Hs.189780 NM_052946 HPRD:06324 NOSTRIN DaIP2 nitric oxide synthase trafficking protein-coding 13-PTNLD9-TUMOR_peak_35917 chr3 131068753 131068977 + 14.14289 NA 3' UTR (NM_024800, exon 18 of 18) 3' UTR (NM_024800, exon 18 of 18) -11824 NR_002949 152195 Hs.380350 NM_194289 HPRD:14093 NUDT16P1 NUDT16P nudix (nucleoside diphosphate linked moiety X)-type motif 16 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_2490 chr1 93790484 93790695 + 14.14289 NA intron (NR_034089, intron 7 of 8) intron (NR_034089, intron 7 of 8) 20779 NR_034089 100131564 Hs.732666 NR_034089 LOC100131564 - uncharacterized LOC100131564 ncRNA 13-PTNLD9-TUMOR_peak_42686 chr5 150949769 150949957 + 14.14096 NA Intergenic MIR3|SINE|MIR -1358 NM_001447 2196 Hs.591255 NM_001447 HPRD:05041 FAT2 CDHF8|CDHR9|HFAT2|MEGF1 FAT atypical cadherin 2 protein-coding 13-PTNLD9-TUMOR_peak_13919 chr12 113683530 113684054 + 14.14096 NA intron (NM_001301214, intron 1 of 26) intron (NM_001301214, intron 1 of 26) 1726 NM_001301214 53373 Hs.524763 NM_017901 HPRD:18217 TPCN1 TPC1 two pore segment channel 1 protein-coding 13-PTNLD9-TUMOR_peak_19342 chr16 53086559 53086785 + 14.14096 NA Intergenic Intergenic -2273 NM_025134 80205 Hs.59159 NM_025134 HPRD:08570 CHD9 AD013|CReMM|KISH2|PRIC320 chromodomain helicase DNA binding protein 9 protein-coding 13-PTNLD9-TUMOR_peak_18665 chr16 18938952 18939174 + 14.14027 NA Intergenic AluY|SINE|Alu -1337 NM_015092 23049 Hs.460179 NM_015092 HPRD:06123 SMG1 61E3.4|ATX|LIP SMG1 phosphatidylinositol 3-kinase-related kinase protein-coding 13-PTNLD9-TUMOR_peak_45649 chr6 86168577 86168738 + 14.13984 NA intron (NM_002526, intron 1 of 8) intron (NM_002526, intron 1 of 8) 9355 NM_002526 4907 Hs.153952 NM_002526 HPRD:00552 NT5E CALJA|CD73|E5NT|NT|NT5|NTE|eN|eNT 5'-nucleotidase, ecto (CD73) protein-coding 13-PTNLD9-TUMOR_peak_6035 chr1 238721513 238721783 + 14.13984 NA Intergenic Intergenic -72331 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 - long intergenic non-protein coding RNA 1139 ncRNA 13-PTNLD9-TUMOR_peak_39782 chr4 160149170 160149437 + 14.13984 NA Intergenic Intergenic -39695 NM_014247 9693 Hs.744884 NM_014247 ENSG00000109756 RAPGEF2 CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|Rap-GEP|nRap GEP Rap guanine nucleotide exchange factor (GEF) 2 protein-coding 13-PTNLD9-TUMOR_peak_2416 chr1 90098353 90098680 + 14.13984 NA promoter-TSS (NM_032270) promoter-TSS (NM_032270) -63 NR_033981 400761 Hs.741594 NR_033981 ENSG00000231999 FLJ27354 - uncharacterized LOC400761 ncRNA 13-PTNLD9-TUMOR_peak_394 chr1 10951192 10951427 + 14.13984 NA Intergenic MLT1I|LTR|ERVL-MaLR 90785 NM_001170754 148345 Hs.127026 NM_173507 HPRD:08780 C1orf127 - chromosome 1 open reading frame 127 protein-coding 13-PTNLD9-TUMOR_peak_19913 chr16 83859758 83860011 + 14.13984 NA Intergenic Intergenic 18376 NM_001537 3281 Hs.250899 NM_001537 HPRD:05185 HSBP1 NPC-A-13 heat shock factor binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_33091 chr22 30646804 30647070 + 14.13984 NA Intergenic Intergenic -4097 NM_002309 3976 Hs.2250 NM_002309 HPRD:08869 LIF CDF|DIA|HILDA|MLPLI leukemia inhibitory factor protein-coding 13-PTNLD9-TUMOR_peak_35744 chr3 126630302 126630586 + 14.13984 NA intron (NM_032343, intron 5 of 7) intron (NM_032343, intron 5 of 7) -76993 NM_032242 5361 Hs.432329 NM_032242 HPRD:11868 PLXNA1 NOV|NOVP|PLEXIN-A1|PLXN1 plexin A1 protein-coding 13-PTNLD9-TUMOR_peak_34949 chr3 72091540 72091805 + 14.13984 NA intron (NR_104116, intron 6 of 6) MLT1J2|LTR|ERVL-MaLR 57934 NR_104116 285286 Hs.559386 NR_104116 LINC00877 - long intergenic non-protein coding RNA 877 ncRNA 13-PTNLD9-TUMOR_peak_44109 chr6 24004343 24004652 + 14.13984 NA Intergenic Intergenic -121917 NM_080723 140767 Hs.726270 NM_080723 HPRD:18285 NRSN1 VMP|p24 neurensin 1 protein-coding 13-PTNLD9-TUMOR_peak_5 chr1 38609 38854 + 14.13752 NA Intergenic MLT1E1A-int|LTR|ERVL-MaLR -2650 NR_026818 645520 Hs.569137 NR_026818 ENSG00000237613 FAM138A F379|FAM138F family with sequence similarity 138, member A ncRNA 13-PTNLD9-TUMOR_peak_17847 chr15 84048370 84048622 + 14.13460 NA Intergenic Intergenic -67484 NM_001301109 6457 Hs.270055 NM_003027 HPRD:04528 SH3GL3 CNSA3|EEN-B2|HsT19371|SH3D2C|SH3P13 SH3-domain GRB2-like 3 protein-coding 13-PTNLD9-TUMOR_peak_25197 chr19 47141927 47142079 + 14.13460 NA Intergenic Intergenic -4064 NM_033258 94235 Hs.283961 NM_033258 HPRD:13593 GNG8 - guanine nucleotide binding protein (G protein), gamma 8 protein-coding 13-PTNLD9-TUMOR_peak_40387 chr5 14582420 14582573 + 14.13121 NA intron (NM_019018, intron 1 of 7) CpG 605 NM_019018 54491 Hs.155085 NM_019018 FAM105A NET20 family with sequence similarity 105, member A protein-coding 13-PTNLD9-TUMOR_peak_11955 chr12 6376580 6376870 + 14.13121 NA Intergenic Intergenic -42877 NM_018173 55200 Hs.631660 NM_018173 HPRD:07692 PLEKHG6 MyoGEF pleckstrin homology domain containing, family G (with RhoGef domain) member 6 protein-coding 13-PTNLD9-TUMOR_peak_37014 chr3 185053722 185053898 + 14.13073 NA intron (NM_001242317, intron 2 of 12) intron (NM_001242317, intron 2 of 12) -27026 NM_004721 9175 Hs.591306 NM_004721 HPRD:05372 MAP3K13 LZK|MEKK13|MLK mitogen-activated protein kinase kinase kinase 13 protein-coding 13-PTNLD9-TUMOR_peak_36562 chr3 158881970 158882326 + 14.13073 NA intron (NM_001042706, intron 1 of 3) intron (NM_001042706, intron 1 of 3) 95107 NM_001197100 654502 Hs.570685 NM_001042705 ENSG00000214216 IQCJ - IQ motif containing J protein-coding 13-PTNLD9-TUMOR_peak_52278 chr8 139843112 139843788 + 14.13073 NA intron (NM_152888, intron 5 of 64) intron (NM_152888, intron 5 of 64) 82786 NM_152888 169044 Hs.117169 NM_152888 HPRD:09885 COL22A1 - collagen, type XXII, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_11378 chr11 118790507 118790867 + 14.13073 NA Intergenic Intergenic -9074 NM_182557 283149 Hs.414740 NM_182557 BCL9L BCL9-2|DLNB11 B-cell CLL/lymphoma 9-like protein-coding 13-PTNLD9-TUMOR_peak_47849 chr7 72440483 72440642 + 14.11538 NA non-coding (NR_003602, exon 2 of 5) non-coding (NR_003602, exon 2 of 5) 349 NR_104007 100101148 Hs.695009 NR_104007 LOC100101148 - FK506 binding protein 6, 36kDa pseudogene pseudo 13-PTNLD9-TUMOR_peak_35265 chr3 107688919 107689450 + 14.11538 NA Intergenic MER5A1|DNA|hAT-Charlie 87132 NR_015394 285205 Hs.134882 NR_015394 ENSG00000240423 LINC00636 - long intergenic non-protein coding RNA 636 ncRNA 13-PTNLD9-TUMOR_peak_43651 chr6 6803496 6803710 + 14.11538 NA Intergenic MIRb|SINE|MIR -180544 NR_026970 285780 Hs.655737 NM_173675 HPRD:08165 LY86-AS1 LY86-AS|LY86AS LY86 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_2775 chr1 110153670 110153848 + 14.10863 NA intron (NM_005272, intron 1 of 7) AluJb|SINE|Alu 1946 NM_005272 2780 Hs.36973 NM_005272 HPRD:00762 GNAT2 ACHM4|GNATC guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2 protein-coding 13-PTNLD9-TUMOR_peak_25912 chr2 285623 285841 + 14.10863 NA intron (NM_001002919, intron 4 of 5) intron (NM_001002919, intron 4 of 5) 2576 NM_001002919 285016 Hs.355207 NM_001002919 HPRD:17344 FAM150B PRO1097|RGPG542 family with sequence similarity 150, member B protein-coding 13-PTNLD9-TUMOR_peak_23665 chr19 2540833 2541195 + 14.10863 NA intron (NM_052847, intron 3 of 4) CpG 64891 NM_015675 4616 Hs.110571 NM_015675 HPRD:05382 GADD45B GADD45BETA|MYD118 growth arrest and DNA-damage-inducible, beta protein-coding 13-PTNLD9-TUMOR_peak_297 chr1 8908849 8909204 + 14.10863 NA Intergenic Intergenic 17623 NR_106786 102465436 NR_106786 MIR6728 hsa-mir-6728 microRNA 6728 ncRNA 13-PTNLD9-TUMOR_peak_48461 chr7 99160608 99160784 + 14.10555 NA intron (NM_001085367, intron 4 of 4) intron (NM_001085367, intron 4 of 4) 4248 NM_001009958 79027 Hs.599798 NM_024061 HPRD:11673 ZNF655 VIK|VIK-1 zinc finger protein 655 protein-coding 13-PTNLD9-TUMOR_peak_28010 chr2 110858853 110859279 + 14.10250 NA intron (NM_005434, intron 1 of 3) intron (NM_005434, intron 1 of 3) -14966 NR_039941 100616123 NR_039941 MIR4436B1 MIR4436B|hsa-mir-4436b-1 microRNA 4436b-1 ncRNA 13-PTNLD9-TUMOR_peak_18531 chr16 11734143 11734623 + 14.09613 NA Intergenic Intergenic -27906 NM_003498 8303 Hs.618526 NM_003498 HPRD:04327 SNN - stannin protein-coding 13-PTNLD9-TUMOR_peak_45324 chr6 53167576 53167762 + 14.09184 NA intron (NM_001242830, intron 1 of 6) intron (NM_001242830, intron 1 of 6) 25878 NR_049866 100847075 NR_049866 miRBase:MI0019287 MIR5685 - microRNA 5685 ncRNA 13-PTNLD9-TUMOR_peak_39705 chr4 155086279 155087038 + 14.09184 NA Intergenic Intergenic 225791 NM_017639 54798 Hs.655664 NM_017639 HPRD:10858 DCHS2 CDH27|CDHJ|CDHR7|PCDH23|PCDHJ dachsous cadherin-related 2 protein-coding 13-PTNLD9-TUMOR_peak_23051 chr18 43744072 43744357 + 14.09184 NA Intergenic Intergenic -9774 NM_001008239 147339 Hs.116486 NM_145055 HPRD:12690 C18orf25 ARKL1|RNF111L1 chromosome 18 open reading frame 25 protein-coding 13-PTNLD9-TUMOR_peak_54668 chr9 124318915 124319278 + 14.08947 NA Intergenic Intergenic -10285 NM_032552 153090 Hs.522378 NM_032552 HPRD:09903 DAB2IP AF9Q34|AIP-1|AIP1|DIP1/2 DAB2 interacting protein protein-coding 13-PTNLD9-TUMOR_peak_26206 chr2 16814919 16815419 + 14.08718 NA intron (NM_030797, intron 1 of 11) intron (NM_030797, intron 1 of 11) 31965 NM_030797 81553 Hs.467769 NM_030797 HPRD:07729 FAM49A - family with sequence similarity 49, member A protein-coding 13-PTNLD9-TUMOR_peak_52162 chr8 134250138 134250349 + 14.08718 NA 3' UTR (NM_006096, exon 16 of 16) 3' UTR (NM_006096, exon 16 of 16) 46961 NM_001204869 8840 Hs.492974 NM_003882 WISP1 CCN4|WISP1c|WISP1i|WISP1tc WNT1 inducible signaling pathway protein 1 protein-coding 13-PTNLD9-TUMOR_peak_40726 chr5 42377767 42377969 + 14.08638 NA Intergenic Intergenic -46009 NM_000163 2690 Hs.125180 NM_000163 HPRD:02971 GHR GHBP growth hormone receptor protein-coding 13-PTNLD9-TUMOR_peak_28702 chr2 150505231 150505529 + 14.08638 NA intron (NR_110240, intron 1 of 2) intron (NR_110240, intron 1 of 2) -61050 NM_015702 27249 Hs.5324 NM_015702 HPRD:10781 MMADHC C2orf25|CL25022|cblD methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria protein-coding 13-PTNLD9-TUMOR_peak_50887 chr8 49104842 49104963 + 14.08638 NA Intergenic Intergenic 183907 NM_003350 7336 Hs.491695 NM_003350 UBE2V2 DDVIT1|DDVit-1|EDAF-1|EDPF-1|EDPF1|MMS2|UEV-2|UEV2 ubiquitin-conjugating enzyme E2 variant 2 protein-coding 13-PTNLD9-TUMOR_peak_43587 chr6 4352168 4352502 + 14.08638 NA Intergenic Intergenic 216029 NR_103764 100507506 Hs.665936 NR_103764 ENSG00000234817 LOC100507506 - uncharacterized LOC100507506 ncRNA 13-PTNLD9-TUMOR_peak_33221 chr22 37749863 37750260 + 14.08638 NA non-coding (NR_110515, exon 1 of 2) non-coding (NR_110515, exon 1 of 2) 818 NR_110515 100506271 Hs.220558 NR_110515 ENSG00000237862 LOC100506271 - uncharacterized LOC100506271 ncRNA 13-PTNLD9-TUMOR_peak_11608 chr11 128773266 128773413 + 14.08638 NA exon (NM_145013, exon 3 of 4) exon (NM_145013, exon 3 of 4) 2253 NM_145013 219833 Hs.689860 NM_145013 HPRD:11344 C11orf45 - chromosome 11 open reading frame 45 protein-coding 13-PTNLD9-TUMOR_peak_9468 chr11 33725250 33725502 + 14.08262 NA 3' UTR (NM_001127223, exon 3 of 3) 3' UTR (NM_001127223, exon 3 of 3) -3090 NM_001166692 100131378 Hs.709466 NM_001166692 C11orf91 - chromosome 11 open reading frame 91 protein-coding 13-PTNLD9-TUMOR_peak_14911 chr13 80324421 80324684 + 14.07681 NA Intergenic Intergenic -53969 NR_125785 102724076 Hs.208617 NR_125785 LINC01038 - long intergenic non-protein coding RNA 1038 ncRNA 13-PTNLD9-TUMOR_peak_45237 chr6 47331601 47331769 + 14.07681 NA Intergenic Intergenic -54002 NM_014452 27242 Hs.443577 NM_014452 HPRD:05759 TNFRSF21 BM-018|CD358|DR6 tumor necrosis factor receptor superfamily, member 21 protein-coding 13-PTNLD9-TUMOR_peak_7719 chr10 73867206 73867403 + 14.07681 NA intron (NM_001198799, intron 10 of 12) intron (NM_001198799, intron 10 of 12) -18514 NM_001134434 9806 Hs.523009 NM_014767 HPRD:12146 SPOCK2 testican-2 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2 protein-coding 13-PTNLD9-TUMOR_peak_16692 chr14 105714746 105714914 + 14.07681 NA promoter-TSS (NM_145685) promoter-TSS (NM_145685) -49 NM_033271 90135 Hs.7367 NM_033271 HPRD:12540 BTBD6 BDPL BTB (POZ) domain containing 6 protein-coding 13-PTNLD9-TUMOR_peak_48477 chr7 99551418 99551582 + 14.07681 NA Intergenic Intergenic 22235 NM_001185 563 Hs.546239 NM_001185 HPRD:01910 AZGP1 ZA2G|ZAG alpha-2-glycoprotein 1, zinc-binding protein-coding 13-PTNLD9-TUMOR_peak_34056 chr3 23216984 23217157 + 14.07681 NA Intergenic Intergenic -27714 NM_152653 7325 Hs.475688 NM_152653 UBE2E2 UBCH8 ubiquitin-conjugating enzyme E2E 2 protein-coding 13-PTNLD9-TUMOR_peak_7554 chr10 69609177 69609356 + 14.07681 NA Intergenic Intergenic -11329 NM_021800 56521 Hs.260720 NM_021800 HPRD:06930 DNAJC12 JDP1 DnaJ (Hsp40) homolog, subfamily C, member 12 protein-coding 13-PTNLD9-TUMOR_peak_54281 chr9 106830918 106831168 + 14.07681 NA Intergenic Intergenic 23712 NR_121580 101928550 Hs.144722 NR_121580 ENSG00000270332 SMC2-AS1 - SMC2 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_4638 chr1 181185706 181185916 + 14.07681 NA Intergenic Intergenic -19713 NR_046249 100287948 Hs.742594 NR_046249 ENSG00000179452 GM140 - uncharacterized LOC100287948 ncRNA 13-PTNLD9-TUMOR_peak_28446 chr2 131149260 131149458 + 14.07054 NA Intergenic CpG 35779 NM_001142370 26469 Hs.516390 NM_014369 HPRD:05961 PTPN18 BDP1|PTP-HSCF protein tyrosine phosphatase, non-receptor type 18 (brain-derived) protein-coding 13-PTNLD9-TUMOR_peak_45134 chr6 44084418 44084724 + 14.07054 NA intron (NM_032111, intron 1 of 2) intron (NM_032111, intron 1 of 2) 10620 NM_032111 64928 Hs.311190 NM_032111 HPRD:14741 MRPL14 L14mt|L32mt|MRP-L14|MRP-L32|MRPL32|RMPL32|RPML32 mitochondrial ribosomal protein L14 protein-coding 13-PTNLD9-TUMOR_peak_49048 chr7 129649856 129650104 + 14.06339 NA Intergenic MIR3|SINE|MIR 41311 NM_001282190 51530 Hs.194157 NM_016478 ENSG00000091732 ZC3HC1 NIPA zinc finger, C3HC-type containing 1 protein-coding 13-PTNLD9-TUMOR_peak_36191 chr3 141086096 141086460 + 14.06297 NA intron (NM_001080412, intron 1 of 7) intron (NM_001080412, intron 1 of 7) 43223 NM_001080412 253461 Hs.518301 NM_152535 ENSG00000177311 ZBTB38 CIBZ|PPP1R171|ZNF921 zinc finger and BTB domain containing 38 protein-coding 13-PTNLD9-TUMOR_peak_32314 chr21 39858261 39858851 + 14.05858 NA intron (NR_111949, intron 3 of 4) intron (NR_111949, intron 3 of 4) 11872 NM_001136155 2078 Hs.473819 NM_004449 HPRD:01298 ERG erg-3|p55 v-ets avian erythroblastosis virus E26 oncogene homolog protein-coding 13-PTNLD9-TUMOR_peak_18763 chr16 22547348 22547679 + 14.05858 NA exon (NM_001135865, exon 7 of 7) exon (NM_001135865, exon 7 of 7) -9506 NR_003676 653786 Hs.564945 NR_003676 ENSG00000257838 LOC653786 - otoancorin pseudogene pseudo 13-PTNLD9-TUMOR_peak_25718 chr19 56146197 56146440 + 14.05858 NA Intergenic Intergenic -6074 NM_207115 51157 Hs.631551 NM_016202 HPRD:18353 ZNF580 - zinc finger protein 580 protein-coding 13-PTNLD9-TUMOR_peak_25208 chr19 47353525 47353686 + 14.05858 NA promoter-TSS (NM_001301076) promoter-TSS (NM_001301076) -58 NM_001301076 1175 Hs.119591 NM_004069 HPRD:03762 AP2S1 AP17|CLAPS2|FBH3|FBHOk|HHC3 adaptor-related protein complex 2, sigma 1 subunit protein-coding 13-PTNLD9-TUMOR_peak_16789 chr15 22928113 22928404 + 14.05701 NA intron (NM_001287810, intron 5 of 31) intron (NM_001287810, intron 5 of 31) -27497 NM_001033028 23191 Hs.26704 NM_014608 HPRD:05890 CYFIP1 P140SRA-1|SHYC|SRA-1|SRA1 cytoplasmic FMR1 interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_21511 chr17 49784690 49784867 + 14.05701 NA intron (NM_001082533, intron 5 of 9) intron (NM_001082533, intron 5 of 9) 370702 NR_122104 440446 Hs.626751 NR_122104 HPRD:13466 LOC440446 - uncharacterized LOC440446 ncRNA 13-PTNLD9-TUMOR_peak_30000 chr2 232277107 232277293 + 14.05701 NA Intergenic Intergenic 16865 NM_145236 93010 Hs.299329 NM_145236 HPRD:12512 B3GNT7 beta3GnT7 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7 protein-coding 13-PTNLD9-TUMOR_peak_29647 chr2 206753897 206754141 + 14.05701 NA Intergenic MLT1I|LTR|ERVL-MaLR 196887 NM_017759 54891 Hs.445036 NM_017759 HPRD:07894 INO80D - INO80 complex subunit D protein-coding 13-PTNLD9-TUMOR_peak_51957 chr8 127808376 127808556 + 14.05701 NA Intergenic MIR|SINE|MIR -216933 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_6140 chr1 245282215 245282410 + 14.05701 NA intron (NM_001143943, intron 6 of 6) intron (NM_001143943, intron 6 of 6) -35975 NM_018012 55083 Hs.368096 NM_018012 ENSG00000162849 KIF26B - kinesin family member 26B protein-coding 13-PTNLD9-TUMOR_peak_42394 chr5 141289754 141290230 + 14.05701 NA Intergenic Intergenic -13393 NM_001142603 9812 Hs.210532 NM_014773 HPRD:13780 KIAA0141 DELE KIAA0141 protein-coding 13-PTNLD9-TUMOR_peak_13620 chr12 104136385 104136559 + 14.05701 NA intron (NM_017564, intron 56 of 68) intron (NM_017564, intron 56 of 68) 98503 NM_001031701 51559 Hs.48428 NM_016575 HPRD:18241 NT5DC3 TU12B1-TY|TU12B1TY 5'-nucleotidase domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_46387 chr6 157470072 157470438 + 14.05701 NA intron (NM_020732, intron 9 of 19) intron (NM_020732, intron 9 of 19) 275036 NM_018452 729515 Hs.157212 NM_018452 ENSG00000215712 TMEM242 BM033|C6orf35 transmembrane protein 242 protein-coding 13-PTNLD9-TUMOR_peak_45786 chr6 97961153 97961370 + 14.05701 NA intron (NR_110757, intron 1 of 4) intron (NR_110757, intron 1 of 4) -98978 NR_031679 100302287 NR_031679 MIR548H3 MIR548H-3|MIRN548H3|hsa-mir-548h-3 microRNA 548h-3 ncRNA 13-PTNLD9-TUMOR_peak_11853 chr12 3413659 3413824 + 14.04899 NA Intergenic Intergenic -76774 NM_001256536 56341 Hs.504530 NM_019854 HPRD:11029 PRMT8 HRMT1L3|HRMT1L4 protein arginine methyltransferase 8 protein-coding 13-PTNLD9-TUMOR_peak_49685 chr7 151393996 151394253 + 14.04899 NA intron (NM_001040633, intron 3 of 15) intron (NM_001040633, intron 3 of 15) -64780 NM_024429 51422 Hs.647072 NM_016203 HPRD:04119 PRKAG2 AAKG|AAKG2|CMH6|H91620p|WPWS protein kinase, AMP-activated, gamma 2 non-catalytic subunit protein-coding 13-PTNLD9-TUMOR_peak_31251 chr20 45191243 45191379 + 14.04488 NA intron (NM_001011554, intron 13 of 13) L2a|LINE|L2 -12098 NM_080721 128506 Hs.526636 NM_080721 ENSG00000149635 OCSTAMP C20orf123|OC-STAMP|dJ257E24.3 osteoclast stimulatory transmembrane protein protein-coding 13-PTNLD9-TUMOR_peak_30475 chr20 15041866 15042000 + 14.04488 NA intron (NM_080676, intron 5 of 16) LTR16C|LTR|ERVL -131769 NR_037841 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_55080 chr9 140330518 140330720 + 14.04488 NA exon (NM_001033113, exon 7 of 10) exon (NM_001033113, exon 7 of 10) 5282 NM_198585 377841 Hs.512562 NM_198585 HPRD:16864 ENTPD8 E-NTPDase|GLSR2492|NTPDase-8|UNQ2492 ectonucleoside triphosphate diphosphohydrolase 8 protein-coding 13-PTNLD9-TUMOR_peak_49025 chr7 129209761 129210047 + 14.04488 NA Intergenic MLT1D-int|LTR|ERVL-MaLR -41639 NM_001293163 4899 Hs.654363 NM_005011 HPRD:02930 NRF1 ALPHA-PAL nuclear respiratory factor 1 protein-coding 13-PTNLD9-TUMOR_peak_17882 chr15 85455422 85455849 + 14.04488 NA intron (NM_001287761, intron 8 of 14) intron (NM_001287761, intron 8 of 14) 27743 NM_001287762 9154 Hs.459187 NM_004213 HPRD:07068 SLC28A1 CNT1|HCNT1 solute carrier family 28 (concentrative nucleoside transporter), member 1 protein-coding 13-PTNLD9-TUMOR_peak_33070 chr22 30013959 30014135 + 14.04488 NA intron (NM_181831, intron 1 of 14) intron (NM_181831, intron 1 of 14) 14502 NM_181832 4771 Hs.187898 NM_000268 HPRD:06980 NF2 ACN|BANF|SCH neurofibromin 2 (merlin) protein-coding 13-PTNLD9-TUMOR_peak_7701 chr10 73598056 73598573 + 14.04382 NA intron (NM_001042465, intron 1 of 14) intron (NM_001042465, intron 1 of 14) 12768 NM_002778 5660 Hs.523004 NM_002778 HPRD:01460 PSAP GLBA|SAP1 prosaposin protein-coding 13-PTNLD9-TUMOR_peak_28168 chr2 114634172 114634448 + 14.04382 NA intron (NR_110174, intron 1 of 4) intron (NR_110174, intron 1 of 4) -13201 NR_102318 10096 Hs.433512 NM_005721 HPRD:05024 ACTR3 ARP3 ARP3 actin-related protein 3 homolog (yeast) protein-coding 13-PTNLD9-TUMOR_peak_33805 chr3 12750356 12750610 + 14.04382 NA Intergenic Intergenic -44783 NM_002880 5894 Hs.159130 NM_002880 HPRD:01265 RAF1 CMD1NN|CRAF|NS5|Raf-1|c-Raf Raf-1 proto-oncogene, serine/threonine kinase protein-coding 13-PTNLD9-TUMOR_peak_51386 chr8 101169932 101170335 + 14.04382 NA promoter-TSS (NM_003114) promoter-TSS (NM_003114) -130 NM_172218 6674 Hs.591866 NM_003114 HPRD:04548 SPAG1 CILD28|CT140|HSD-3.8|SP75|TPIS sperm associated antigen 1 protein-coding 13-PTNLD9-TUMOR_peak_31270 chr20 45948639 45948785 + 14.03542 NA non-coding (NR_024594, exon 1 of 1) non-coding (NR_024594, exon 1 of 1) 1466 NR_024594 100131496 Hs.662547 NR_024594 ENSG00000267882 LOC100131496 - uncharacterized LOC100131496 ncRNA 13-PTNLD9-TUMOR_peak_56330 chrX 107639442 107639711 + 14.02951 NA intron (NM_001287758, intron 2 of 45) intron (NM_001287758, intron 2 of 45) 42084 NM_001287760 1288 Hs.145586 NM_001847 HPRD:02364 COL4A6 CXDELq22.3|DELXq22.3|DFNX6 collagen, type IV, alpha 6 protein-coding 13-PTNLD9-TUMOR_peak_20320 chr17 4812454 4812741 + 14.02951 NA Intergenic Intergenic -6228 NM_000080 1145 Hs.654535 NM_000080 HPRD:00008 CHRNE ACHRE|CMS1D|CMS1E|CMS2A|FCCMS|SCCMS cholinergic receptor, nicotinic, epsilon (muscle) protein-coding 13-PTNLD9-TUMOR_peak_14216 chr12 124985169 124985514 + 14.02951 NA intron (NM_001077261, intron 2 of 47) intron (NM_001077261, intron 2 of 47) 66669 NM_006312 9612 Hs.137510 NM_006312 HPRD:02910 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 13-PTNLD9-TUMOR_peak_43597 chr6 4733232 4733494 + 14.02951 NA intron (NR_026590, intron 2 of 8) intron (NR_026590, intron 2 of 8) 26970 NR_026590 9425 Hs.269092 NM_004824 HPRD:04803 CDYL CDYL1 chromodomain protein, Y-like protein-coding 13-PTNLD9-TUMOR_peak_39541 chr4 146074457 146074670 + 14.02951 NA intron (NM_001102653, intron 10 of 20) MIRb|SINE|MIR 21333 NM_017493 54726 Hs.270851 NM_017493 HPRD:11033 OTUD4 DUBA6|HIN1|HSHIN1 OTU deubiquitinase 4 protein-coding 13-PTNLD9-TUMOR_peak_28377 chr2 128273620 128273905 + 14.02951 NA intron (NM_017969, intron 2 of 13) AluSx|SINE|Alu 10325 NM_017969 55677 Hs.469879 NM_017969 HPRD:07639 IWS1 - IWS1 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_15466 chr14 32396582 32396969 + 14.02951 NA Intergenic L2a|LINE|L2 149130 NR_027263 84837 Hs.496755 NM_032751 ENSG00000258655 ARHGAP5-AS1 C14orf128 ARHGAP5 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_45288 chr6 52455445 52455710 + 14.01608 NA Intergenic Intergenic 13481 NR_103447 401264 Hs.544586 NR_103446 ENSG00000225791 TRAM2-AS1 - TRAM2 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_1892 chr1 56046729 56046978 + 14.01372 NA Intergenic L2a|LINE|L2 355539 NR_039618 100616272 NR_039618 miRBase:MI0016759 MIR4422 - microRNA 4422 ncRNA 13-PTNLD9-TUMOR_peak_54008 chr9 95268527 95268851 + 14.01372 NA intron (NM_001393, intron 6 of 9) intron (NM_001393, intron 6 of 9) 21651 NR_039817 100616351 NR_039817 miRBase:MI0017301 MIR4670 - microRNA 4670 ncRNA 13-PTNLD9-TUMOR_peak_48777 chr7 106968524 106968700 + 14.01372 NA intron (NM_181733, intron 10 of 20) Tigger3a|DNA|TcMar-Tigger -141890 NM_005295 2845 Hs.657277 NM_005295 HPRD:03552 GPR22 - G protein-coupled receptor 22 protein-coding 13-PTNLD9-TUMOR_peak_15145 chr13 113650121 113650354 + 14.01372 NA intron (NM_001112732, intron 1 of 29) intron (NM_001112732, intron 1 of 29) -5791 NM_024979 23263 Hs.170422 NM_024979 HPRD:14371 MCF2L ARHGEF14|DBS|OST MCF.2 cell line derived transforming sequence-like protein-coding 13-PTNLD9-TUMOR_peak_48943 chr7 127449404 127449558 + 14.01372 NA intron (NM_014390, intron 11 of 23) intron (NM_014390, intron 11 of 23) 157279 NM_014390 27044 Hs.122523 NM_014390 HPRD:03714 SND1 TDRD11|p100 staphylococcal nuclease and tudor domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_21834 chr17 65152726 65152964 + 14.01372 NA intron (NM_014877, intron 17 of 32) L2|LINE|L2 88474 NM_014877 9931 Hs.370140 NM_014877 HPRD:10452 HELZ DHRC|DRHC|HUMORF5 helicase with zinc finger protein-coding 13-PTNLD9-TUMOR_peak_17414 chr15 63334601 63334781 + 14.01372 NA promoter-TSS (NM_000366) promoter-TSS (NM_000366) -147 NM_001018006 7168 Hs.133892 NM_000366 HPRD:01839 TPM1 C15orf13|CMD1Y|CMH3|HTM-alpha|LVNC9|TMSA tropomyosin 1 (alpha) protein-coding 13-PTNLD9-TUMOR_peak_21541 chr17 53783285 53783434 + 14.01372 NA Intergenic THE1D|LTR|ERVL-MaLR 16866 NM_018286 55273 Hs.173233 NM_018286 HPRD:07719 TMEM100 - transmembrane protein 100 protein-coding 13-PTNLD9-TUMOR_peak_265 chr1 8214806 8215093 + 14.01372 NA Intergenic Intergenic -128556 NM_018948 54206 Hs.605445 NM_018948 HPRD:09218 ERRFI1 GENE-33|MIG-6|MIG6|RALT ERBB receptor feedback inhibitor 1 protein-coding 13-PTNLD9-TUMOR_peak_26501 chr2 31030267 31030480 + 14.01372 NA promoter-TSS (NM_144575) promoter-TSS (NM_144575) -62 NM_144575 92291 Hs.660911 NM_144575 HPRD:07008 CAPN13 - calpain 13 protein-coding 13-PTNLD9-TUMOR_peak_34693 chr3 53855848 53856020 + 14.01372 NA intron (NM_018397, intron 4 of 8) intron (NM_018397, intron 4 of 8) 24486 NM_018397 55349 Hs.126688 NM_018397 CHDH - choline dehydrogenase protein-coding 13-PTNLD9-TUMOR_peak_48470 chr7 99360676 99360896 + 14.01372 NA intron (NM_017460, intron 10 of 12) intron (NM_017460, intron 10 of 12) 21025 NM_017460 1576 Hs.728751 NM_017460 CYP3A4 CP33|CP34|CYP3A|CYP3A3|CYPIIIA3|CYPIIIA4|HLP|NF-25|P450C3|P450PCN1 cytochrome P450, family 3, subfamily A, polypeptide 4 protein-coding 13-PTNLD9-TUMOR_peak_54575 chr9 118434936 118435242 + 14.00890 NA Intergenic Intergenic 71429 NR_109805 101928775 Hs.522362 NR_109805 LOC101928775 - uncharacterized LOC101928775 ncRNA 13-PTNLD9-TUMOR_peak_45127 chr6 44019355 44019509 + 14.00890 NA Intergenic Intergenic 51095 NM_153246 221416 Hs.531926 NM_153246 HPRD:14640 C6orf223 - chromosome 6 open reading frame 223 protein-coding 13-PTNLD9-TUMOR_peak_45136 chr6 44094537 44094732 + 14.00584 NA promoter-TSS (NM_018426) promoter-TSS (NM_018426) 557 NM_032111 64928 Hs.311190 NM_032111 HPRD:14741 MRPL14 L14mt|L32mt|MRP-L14|MRP-L32|MRPL32|RMPL32|RPML32 mitochondrial ribosomal protein L14 protein-coding 13-PTNLD9-TUMOR_peak_29307 chr2 187383807 187383999 + 14.00584 NA Intergenic L1ME1|LINE|L1 33018 NM_018471 55854 Hs.741180 NM_018471 HPRD:13988 ZC3H15 HT010|LEREPO4|MSTP012 zinc finger CCCH-type containing 15 protein-coding 13-PTNLD9-TUMOR_peak_28410 chr2 129492135 129492533 + 14.00584 NA Intergenic Intergenic -129840 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 13-PTNLD9-TUMOR_peak_35555 chr3 122202051 122202244 + 14.00584 NA intron (NR_026698, intron 2 of 14) intron (NR_026698, intron 2 of 14) 31639 NM_002264 3836 Hs.161008 NM_002264 HPRD:02819 KPNA1 IPOA5|NPI-1|RCH2|SRP1 karyopherin alpha 1 (importin alpha 5) protein-coding 13-PTNLD9-TUMOR_peak_13943 chr12 116872596 116872820 + 14.00584 NA Intergenic MIRb|SINE|MIR -6585 NR_039683 100616309 NR_039683 miRBase:MI0016824 MIR4472-2 - microRNA 4472-2 ncRNA 13-PTNLD9-TUMOR_peak_31944 chr21 15448887 15449045 + 14.00584 NA Intergenic Intergenic -96201 NR_027270 391267 Hs.364456 NM_153750 ENSG00000215559 ANKRD20A11P C21orf81 ankyrin repeat domain 20 family, member A11, pseudogene pseudo 13-PTNLD9-TUMOR_peak_21403 chr17 47647463 47647618 + 14.00584 NA intron (NR_103773, intron 1 of 2) CpG 3886 NR_103773 100288866 Hs.720309 NR_103773 ENSG00000249906 LOC100288866 - uncharacterized LOC100288866 ncRNA 13-PTNLD9-TUMOR_peak_6464 chr10 11726924 11727072 + 14.00584 NA Intergenic Intergenic -57358 NM_024693 79746 Hs.22242 NM_024693 HPRD:10930 ECHDC3 - enoyl CoA hydratase domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_35384 chr3 112372505 112372678 + 14.00584 NA Intergenic Intergenic -12601 NM_199511 151887 Hs.477128 NM_199511 HPRD:10508 CCDC80 DRO1|SSG1|URB|okuribin coiled-coil domain containing 80 protein-coding 13-PTNLD9-TUMOR_peak_40321 chr5 10601444 10601884 + 14.00033 NA intron (NM_001164440, intron 1 of 3) L2c|LINE|L2 37229 NM_001164440 651746 Hs.26039 NM_001164440 ANKRD33B - ankyrin repeat domain 33B protein-coding 13-PTNLD9-TUMOR_peak_16145 chr14 69544610 69544821 + 14.00033 NA intron (NM_001284206, intron 6 of 8) MIR3|SINE|MIR 74601 NM_001284207 8816 Hs.509780 NM_003861 HPRD:16032 DCAF5 BCRG2|BCRP2|D14S1461E|WDR22 DDB1 and CUL4 associated factor 5 protein-coding 13-PTNLD9-TUMOR_peak_11048 chr11 101982808 101983000 + 14.00033 NA promoter-TSS (NM_001195045) promoter-TSS (NM_001195045) -267 NM_001195045 10413 Hs.503692 NM_006106 HPRD:09424 YAP1 COB1|YAP|YAP2|YAP65|YKI Yes-associated protein 1 protein-coding 13-PTNLD9-TUMOR_peak_28642 chr2 143828868 143829025 + 14.00033 NA Intergenic Intergenic -57953 NM_018460 55843 Hs.171011 NM_018460 HPRD:06447 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 13-PTNLD9-TUMOR_peak_1705 chr1 48485402 48485816 + 13.99837 NA Intergenic Intergenic -23047 NM_001194986 388630 Hs.61504 NM_001194986 ENSG00000269113 TRABD2B TIKI2 TraB domain containing 2B protein-coding 13-PTNLD9-TUMOR_peak_35942 chr3 131973908 131974145 + 13.99837 NA Intergenic Intergenic -62185 NM_001099 55 Hs.433060 NM_001099 HPRD:01378 ACPP 5'-NT|ACP-3|ACP3 acid phosphatase, prostate protein-coding 13-PTNLD9-TUMOR_peak_32676 chr22 18393811 18394048 + 13.99837 NA intron (NM_015241, intron 1 of 31) intron (NM_015241, intron 1 of 31) -4277 NM_001136004 57553 Hs.528024 NM_015241 ENSG00000243156 MICAL3 MICAL-3 microtubule associated monooxygenase, calponin and LIM domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_47529 chr7 55131499 55131614 + 13.99837 NA intron (NM_201284, intron 1 of 15) intron (NM_201284, intron 1 of 15) 44831 NM_005228 1956 Hs.488293 NM_005228 HPRD:00579 EGFR ERBB|ERBB1|HER1|PIG61|mENA epidermal growth factor receptor protein-coding 13-PTNLD9-TUMOR_peak_15452 chr14 31664508 31664649 + 13.99837 NA intron (NM_015382, intron 2 of 42) L2c|LINE|L2 12151 NM_015382 25831 Hs.708017 NM_015382 HPRD:17098 HECTD1 EULIR HECT domain containing E3 ubiquitin protein ligase 1 protein-coding 13-PTNLD9-TUMOR_peak_11958 chr12 6389033 6389482 + 13.98493 NA Intergenic MIRb|SINE|MIR -30345 NM_018173 55200 Hs.631660 NM_018173 HPRD:07692 PLEKHG6 MyoGEF pleckstrin homology domain containing, family G (with RhoGef domain) member 6 protein-coding 13-PTNLD9-TUMOR_peak_6006 chr1 236666471 236666794 + 13.98359 NA Intergenic Intergenic -14882 NM_201545 3964 Hs.4082 NM_006499 HPRD:09356 LGALS8 Gal-8|PCTA-1|PCTA1|Po66-CBP lectin, galactoside-binding, soluble, 8 protein-coding 13-PTNLD9-TUMOR_peak_4857 chr1 196084881 196085085 + 13.97281 NA Intergenic MLT1H|LTR|ERVL-MaLR 466628 NR_039888 100616363 NR_039888 MIR4735 - microRNA 4735 ncRNA 13-PTNLD9-TUMOR_peak_1282 chr1 40385307 40385467 + 13.97281 NA Intergenic Intergenic -17700 NM_001033082 4610 Hs.437922 NM_005376 HPRD:01279 MYCL LMYC|MYCL1|bHLHe38 v-myc avian myelocytomatosis viral oncogene lung carcinoma derived homolog protein-coding 13-PTNLD9-TUMOR_peak_24792 chr19 36402869 36403047 + 13.97281 NA Intergenic Intergenic -3747 NM_001173515 7305 Hs.515369 NM_003332 HPRD:04996 TYROBP DAP12|KARAP|PLOSL TYRO protein tyrosine kinase binding protein protein-coding 13-PTNLD9-TUMOR_peak_46731 chr7 2900335 2900580 + 13.97281 NA Intergenic MLT2C1|LTR|ERVL -16498 NM_001293092 2768 Hs.487341 NM_007353 HPRD:05093 GNA12 NNX3|RMP|gep guanine nucleotide binding protein (G protein) alpha 12 protein-coding 13-PTNLD9-TUMOR_peak_1605 chr1 46357955 46358372 + 13.97281 NA intron (NM_015112, intron 4 of 28) MER31-int|LTR|ERV1 88878 NM_015112 23139 Hs.319481 NM_015112 HPRD:11294 MAST2 MAST205|MTSSK microtubule associated serine/threonine kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_44019 chr6 18501980 18502171 + 13.97281 NA Intergenic Intergenic -69940 NR_030312 693125 NR_030312 miRBase:MI0003593 MIR548A1 MIRN548A1 microRNA 548a-1 ncRNA 13-PTNLD9-TUMOR_peak_49769 chr7 154372071 154372192 + 13.97281 NA intron (NM_001290252, intron 5 of 23) intron (NM_001290252, intron 5 of 23) -348096 NR_024477 100132707 Hs.586358 NR_024476 ENSG00000214106 PAXIP1OS PAXIP1-AS2 PAXIP1 opposite strand ncRNA 13-PTNLD9-TUMOR_peak_21567 chr17 55071828 55072204 + 13.97281 NA intron (NM_021626, intron 6 of 12) intron (NM_021626, intron 6 of 12) 16548 NM_021626 59342 Hs.514950 NM_021626 HPRD:10194 SCPEP1 HSCP1|RISC serine carboxypeptidase 1 protein-coding 13-PTNLD9-TUMOR_peak_30830 chr20 32978647 32978909 + 13.97281 NA intron (NM_001257138, intron 2 of 23) AluSq2|SINE|Alu 27737 NM_031483 83737 Hs.632272 NM_031483 ENSG00000078747 ITCH AIF4|AIP4|NAPP1|dJ468O1.1 itchy E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_39024 chr4 107286801 107286995 + 13.97281 NA intron (NM_001195138, intron 1 of 1) intron (NM_001195138, intron 1 of 1) 1694 NM_001195138 100507096 Hs.722750 NM_001195138 GIMD1 - GIMAP family P-loop NTPase domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_4141 chr1 161337630 161337751 + 13.97281 NA promoter-TSS (NM_001013625) promoter-TSS (NM_001013625) -17 NM_001013625 257177 Hs.534593 NM_001013625 HPRD:13257 C1orf192 Flattop|Fltp chromosome 1 open reading frame 192 protein-coding 13-PTNLD9-TUMOR_peak_17470 chr15 66194845 66195049 + 13.97281 NA intron (NM_032445, intron 21 of 22) intron (NM_032445, intron 21 of 22) 33150 NM_004663 8766 Hs.321541 NM_004663 HPRD:05715 RAB11A YL8 RAB11A, member RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_22811 chr18 22236674 22236839 + 13.97281 NA intron (NR_040033, intron 1 of 2) intron (NR_040033, intron 1 of 2) 28610 NR_040033 729950 Hs.585850 NR_040033 ENSG00000265485 LOC729950 - uncharacterized LOC729950 ncRNA 13-PTNLD9-TUMOR_peak_34100 chr3 24730389 24730517 + 13.97281 NA Intergenic L2b|LINE|L2 -167527 NR_039955 100616448 NR_039955 miRBase:MI0017439 MIR4792 miR-4792 microRNA 4792 ncRNA 13-PTNLD9-TUMOR_peak_5576 chr1 224401662 224402016 + 13.96982 NA promoter-TSS (NR_110669) promoter-TSS (NR_110669) -858 NR_110669 101927143 Hs.638720 NR_110669 ENSG00000232628 LOC101927143 - uncharacterized LOC101927143 ncRNA 13-PTNLD9-TUMOR_peak_10684 chr11 76289701 76289900 + 13.96884 NA Intergenic Intergenic 91244 NM_005512 2615 Hs.151641 NM_005512 HPRD:00667 LRRC32 D11S833E|GARP leucine rich repeat containing 32 protein-coding 13-PTNLD9-TUMOR_peak_18370 chr16 4475416 4475621 + 13.96884 NA promoter-TSS (NM_001135110) promoter-TSS (NM_001135110) -288 NM_001135110 9093 Hs.459779 NM_005147 HPRD:09758 DNAJA3 HCA57|TID1|hTID-1 DnaJ (Hsp40) homolog, subfamily A, member 3 protein-coding 13-PTNLD9-TUMOR_peak_32678 chr22 18407505 18407924 + 13.96530 NA intron (NM_015241, intron 1 of 31) MSTB|LTR|ERVL-MaLR -18062 NM_001136004 57553 Hs.528024 NM_015241 ENSG00000243156 MICAL3 MICAL-3 microtubule associated monooxygenase, calponin and LIM domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_3713 chr1 153461243 153461535 + 13.96530 NA Intergenic Intergenic -28252 NM_002963 6278 Hs.112408 NM_002963 HPRD:02645 S100A7 PSOR1|S100A7c S100 calcium binding protein A7 protein-coding 13-PTNLD9-TUMOR_peak_45515 chr6 74405467 74406048 + 13.95675 NA promoter-TSS (NR_110889) promoter-TSS (NR_110889) -51 NM_001159587 135228 Hs.399891 NM_133493 HPRD:10590 CD109 CPAMD7|p180|r150 CD109 molecule protein-coding 13-PTNLD9-TUMOR_peak_42345 chr5 140419232 140419462 + 13.95675 NA Intergenic Intergenic -11614 NM_013340 29930 Hs.278950 NM_013340 HPRD:08397 PCDHB1 PCDH-BETA1 protocadherin beta 1 protein-coding 13-PTNLD9-TUMOR_peak_35830 chr3 128661370 128661546 + 13.95458 NA Intergenic MER77B|LTR|ERVL 51528 NM_020741 57501 Hs.518247 NM_020741 ENSG00000114656 KIAA1257 - KIAA1257 protein-coding 13-PTNLD9-TUMOR_peak_18904 chr16 28947842 28948080 + 13.95458 NA intron (NM_001178098, intron 7 of 14) intron (NM_001178098, intron 7 of 14) 4701 NM_001770 930 Hs.652262 NM_001770 HPRD:00113 CD19 B4|CVID3 CD19 molecule protein-coding 13-PTNLD9-TUMOR_peak_39907 chr4 178363228 178363724 + 13.95458 NA exon (NM_001171988, exon 1 of 9) exon (NM_001171988, exon 1 of 9) 181 NM_001171988 175 Hs.207776 NM_000027 HPRD:01949 AGA AGU|ASRG|GA aspartylglucosaminidase protein-coding 13-PTNLD9-TUMOR_peak_15480 chr14 32699386 32699638 + 13.95458 NA Intergenic Intergenic -27037 NR_125730 103625684 NR_125730 RNU6-2 U6-2 RNA, U6 small nuclear 2 snRNA 13-PTNLD9-TUMOR_peak_18473 chr16 10142736 10143027 + 13.95170 NA intron (NM_000833, intron 3 of 13) intron (NM_000833, intron 3 of 13) 133043 NM_001134408 2903 Hs.411472 NM_000833 HPRD:00698 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate receptor, ionotropic, N-methyl D-aspartate 2A protein-coding 13-PTNLD9-TUMOR_peak_50703 chr8 41365829 41366189 + 13.95170 NA intron (NM_001002296, intron 4 of 4) intron (NM_001002296, intron 4 of 4) 17836 NM_001002296 51125 Hs.654773 NM_016099 HPRD:13595 GOLGA7 GCP16|GOLGA3AP1|GOLGA7A|HSPC041 golgin A7 protein-coding 13-PTNLD9-TUMOR_peak_10049 chr11 62078578 62078938 + 13.95170 NA Intergenic Intergenic -12222 NM_206998 404552 Hs.473247 NM_206998 HPRD:15301 SCGB1D4 - secretoglobin, family 1D, member 4 protein-coding 13-PTNLD9-TUMOR_peak_54473 chr9 115582163 115582401 + 13.95170 NA intron (NM_001012994, intron 3 of 8) intron (NM_001012994, intron 3 of 8) 69148 NM_001012994 401548 Hs.522350 NM_001012994 ENSG00000148158 SNX30 ATG24A sorting nexin family member 30 protein-coding 13-PTNLD9-TUMOR_peak_35436 chr3 114368324 114368470 + 13.95170 NA intron (NR_121662, intron 3 of 6) intron (NR_121662, intron 3 of 6) -24605 NM_001164346 26137 Hs.202577 NM_015642 HPRD:05822 ZBTB20 DPZF|HOF|ODA-8S|ZNF288 zinc finger and BTB domain containing 20 protein-coding 13-PTNLD9-TUMOR_peak_51770 chr8 121798007 121798351 + 13.95170 NA intron (NM_021021, intron 1 of 6) L1PBa|LINE|L1 24686 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 13-PTNLD9-TUMOR_peak_46447 chr6 160137851 160138029 + 13.95170 NA Intergenic Intergenic -10090 NM_004906 9589 Hs.446091 NM_004906 HPRD:09259 WTAP - Wilms tumor 1 associated protein protein-coding 13-PTNLD9-TUMOR_peak_14524 chr13 30833947 30834103 + 13.95170 NA intron (NM_001014380, intron 3 of 10) L1PA3|LINE|L1 47166 NM_001014380 84056 Hs.243596 NM_032116 HPRD:13753 KATNAL1 - katanin p60 subunit A-like 1 protein-coding 13-PTNLD9-TUMOR_peak_52749 chr9 12860045 12860221 + 13.95170 NA Intergenic Intergenic -45745 NR_125775 101929467 Hs.586443 NR_125775 LURAP1L-AS1 - LURAP1L antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_43940 chr6 16293193 16293480 + 13.95170 NA intron (NM_006877, intron 8 of 8) intron (NM_006877, intron 8 of 8) 54525 NM_006877 2766 Hs.484741 NM_006877 HPRD:00754 GMPR GMPR1 guanosine monophosphate reductase protein-coding 13-PTNLD9-TUMOR_peak_456 chr1 12546541 12546862 + 13.95151 NA intron (NM_015378, intron 67 of 69) intron (NM_015378, intron 67 of 69) -20599 NR_003025 677885 Hs.658450 NR_003025 SNORA59A ACA59 small nucleolar RNA, H/ACA box 59A snoRNA 13-PTNLD9-TUMOR_peak_29119 chr2 174517131 174517348 + 13.95151 NA Intergenic Intergenic 297678 NM_145810 83879 Hs.470654 NM_031942 HPRD:09874 CDCA7 JPO1 cell division cycle associated 7 protein-coding 13-PTNLD9-TUMOR_peak_2972 chr1 116039835 116040040 + 13.95151 NA Intergenic Intergenic -144637 NM_001172411 81839 Hs.515130 NM_138959 HPRD:18279 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 13-PTNLD9-TUMOR_peak_53890 chr9 90277816 90278035 + 13.95151 NA intron (NM_001288729, intron 18 of 25) intron (NM_001288729, intron 18 of 25) -63049 NM_001912 1514 Hs.731507 NM_001912 HPRD:00293 CTSL CATL|CTSL1|MEP cathepsin L protein-coding 13-PTNLD9-TUMOR_peak_35389 chr3 112450242 112450470 + 13.95151 NA Intergenic MER39|LTR|ERV1 17810 NR_110017 101929694 Hs.385630 NR_110017 ENSG00000240893 LOC101929694 - uncharacterized LOC101929694 ncRNA 13-PTNLD9-TUMOR_peak_7716 chr10 73840472 73840670 + 13.95151 NA intron (NM_001244950, intron 1 of 10) intron (NM_001244950, intron 1 of 10) 7960 NM_001244950 9806 Hs.523009 NM_014767 HPRD:12146 SPOCK2 testican-2 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2 protein-coding 13-PTNLD9-TUMOR_peak_15359 chr14 24550316 24550627 + 13.95151 NA exon (NM_006177, exon 3 of 3) exon (NM_006177, exon 3 of 3) 3361 NM_006177 4901 Hs.652297 NM_006177 HPRD:08875 NRL D14S46E|NRL-MAF|RP27 neural retina leucine zipper protein-coding 13-PTNLD9-TUMOR_peak_36962 chr3 183894303 183894465 + 13.93844 NA intron (NM_001025205, intron 1 of 10) intron (NM_001025205, intron 1 of 10) 1750 NM_004068 1173 Hs.518460 NM_004068 HPRD:03014 AP2M1 AP50|CLAPM1|mu2 adaptor-related protein complex 2, mu 1 subunit protein-coding 13-PTNLD9-TUMOR_peak_10198 chr11 64901969 64902148 + 13.93043 NA promoter-TSS (NM_032431) promoter-TSS (NM_032431) -55 NM_172230 84447 Hs.75859 NM_032431 HPRD:07618 SYVN1 DER3|HRD1 synovial apoptosis inhibitor 1, synoviolin protein-coding 13-PTNLD9-TUMOR_peak_28314 chr2 122457064 122457316 + 13.93043 NA intron (NR_037857, intron 2 of 3) intron (NR_037857, intron 2 of 3) 37313 NM_032390 84365 Hs.367842 NM_032390 HPRD:17576 NIFK MKI67IP|Nopp34 nucleolar protein interacting with the FHA domain of MKI67 protein-coding 13-PTNLD9-TUMOR_peak_13184 chr12 65996422 65996602 + 13.92901 NA intron (NR_120434, intron 2 of 4) intron (NR_120434, intron 2 of 4) 39640 NR_120433 100507065 Hs.591038 NR_120431 ENSG00000250748 LOC100507065 - uncharacterized LOC100507065 ncRNA 13-PTNLD9-TUMOR_peak_49440 chr7 142340105 142340275 + 13.92901 NA Intergenic Intergenic -33941 NM_001190487 100463482 NM_001190487 ENSG00000270672 MTRNR2L6 HN6 MT-RNR2-like 6 protein-coding 13-PTNLD9-TUMOR_peak_7226 chr10 47002613 47002812 + 13.92901 NA Intergenic Intergenic 9166 NM_014696 9721 Hs.523375 NM_014696 GPRIN2 GRIN2|KIAA0514 G protein regulated inducer of neurite outgrowth 2 protein-coding 13-PTNLD9-TUMOR_peak_28172 chr2 114735677 114736154 + 13.92661 NA non-coding (NR_034130, exon 1 of 1) non-coding (NR_034130, exon 1 of 1) -1231 NR_034128 440900 Hs.662205 NR_034128 ENSG00000234199 LINC01191 VIN|lnc-ACTR3 long intergenic non-protein coding RNA 1191 ncRNA 13-PTNLD9-TUMOR_peak_52869 chr9 20319692 20320195 + 13.91686 NA Intergenic Intergenic 91293 NR_039684 100616229 NR_039684 MIR4473 - microRNA 4473 ncRNA 13-PTNLD9-TUMOR_peak_36454 chr3 154073989 154074140 + 13.91686 NA intron (NM_001038705, intron 3 of 3) THE1D|LTR|ERVL-MaLR -31778 NM_001114397 170506 Hs.446270 NM_020865 HPRD:09918 DHX36 DDX36|G4R1|MLEL1|RHAU DEAH (Asp-Glu-Ala-His) box polypeptide 36 protein-coding 13-PTNLD9-TUMOR_peak_28550 chr2 134946725 134947110 + 13.91686 NA Intergenic MER21C|LTR|ERVL 62221 NR_037450 100500878 NR_037450 miRBase:MI0016080 MIR3679 - microRNA 3679 ncRNA 13-PTNLD9-TUMOR_peak_1390 chr1 42248896 42249256 + 13.91686 NA intron (NM_024503, intron 1 of 8) intron (NM_024503, intron 1 of 8) 135302 NM_024503 59269 Hs.403972 NM_024503 HPRD:09442 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 13-PTNLD9-TUMOR_peak_17186 chr15 44589412 44589544 + 13.91686 NA intron (NM_177974, intron 1 of 8) intron (NM_177974, intron 1 of 8) 8569 NM_138423 113201 Hs.512867 NM_138423 HPRD:11018 CASC4 H63 cancer susceptibility candidate 4 protein-coding 13-PTNLD9-TUMOR_peak_42305 chr5 139536830 139536985 + 13.91686 NA Intergenic Intergenic -17746 NM_032412 84418 Hs.529798 NM_032412 CYSTM1 C5orf32 cysteine-rich transmembrane module containing 1 protein-coding 13-PTNLD9-TUMOR_peak_26350 chr2 26241105 26241276 + 13.91686 NA Intergenic Intergenic -15539 NM_016131 10890 Hs.467960 NM_016131 HPRD:06692 RAB10 - RAB10, member RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_4916 chr1 200865924 200866168 + 13.91451 NA intron (NM_001142569, intron 1 of 9) intron (NM_001142569, intron 1 of 9) 2097 NM_001142569 55765 Hs.518997 NM_018265 HPRD:07712 C1orf106 - chromosome 1 open reading frame 106 protein-coding 13-PTNLD9-TUMOR_peak_40312 chr5 10518530 10518769 + 13.91401 NA Intergenic L1MC4|LINE|L1 -15809 NR_104606 101929412 Hs.508287 NR_104606 ENSG00000249396 LOC101929412 - uncharacterized LOC101929412 ncRNA 13-PTNLD9-TUMOR_peak_26451 chr2 28940370 28940593 + 13.91401 NA Intergenic L2a|LINE|L2 -34133 NM_206876 5500 Hs.702907 NM_002709 HPRD:11792 PPP1CB HEL-S-80p|PP-1B|PP1B|PP1beta|PPP1CD protein phosphatase 1, catalytic subunit, beta isozyme protein-coding 13-PTNLD9-TUMOR_peak_13164 chr12 65073308 65073729 + 13.91401 NA intron (NR_040718, intron 1 of 3) intron (NR_040718, intron 1 of 3) -57133 NR_037515 100500856 NR_037515 MIR548Z - microRNA 548z ncRNA 13-PTNLD9-TUMOR_peak_37537 chr4 681101 681275 + 13.90965 NA intron (NM_032219, intron 1 of 9) intron (NM_032219, intron 1 of 9) 2042 NM_001294341 84179 Hs.567612 NM_032219 HPRD:08650 MFSD7 - major facilitator superfamily domain containing 7 protein-coding 13-PTNLD9-TUMOR_peak_1289 chr1 40442957 40443238 + 13.90965 NA Intergenic Intergenic 22313 NM_032793 84879 Hs.655177 NM_032793 HPRD:07861 MFSD2A MFSD2|NLS1 major facilitator superfamily domain containing 2A protein-coding 13-PTNLD9-TUMOR_peak_49929 chr8 580928 581293 + 13.90965 NA Intergenic Intergenic -85329 NM_175075 157695 Hs.289293 NM_175075 HPRD:13740 TDRP C8orf42|Inm01|TDRP1|TDRP2 testis development related protein protein-coding 13-PTNLD9-TUMOR_peak_42132 chr5 134085187 134085386 + 13.90455 NA intron (NM_001745, intron 3 of 3) intron (NM_001745, intron 3 of 3) -9138 NR_125341 9879 Hs.406549 NM_014829 HPRD:10862 DDX46 PRPF5|Prp5 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 protein-coding 13-PTNLD9-TUMOR_peak_41927 chr5 125796734 125797064 + 13.90455 NA intron (NM_001146320, intron 1 of 12) intron (NM_001146320, intron 1 of 12) -3888 NM_001146322 65983 Hs.363558 NM_023927 HPRD:11402 GRAMD3 NS3TP2 GRAM domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_47001 chr7 20424715 20425050 + 13.90455 NA intron (NM_002214, intron 6 of 13) intron (NM_002214, intron 6 of 13) -53497 NR_110119 101927811 Hs.285724 NR_110119 ENSG00000271133 LOC101927811 - uncharacterized LOC101927811 ncRNA 13-PTNLD9-TUMOR_peak_1087 chr1 35785647 35786058 + 13.90455 NA intron (NM_005095, intron 1 of 29) MER21B|LTR|ERVL 51284 NM_005095 9202 Hs.269211 NM_005095 HPRD:10326 ZMYM4 CDIR|MYM|ZNF198L3|ZNF262 zinc finger, MYM-type 4 protein-coding 13-PTNLD9-TUMOR_peak_35383 chr3 112366081 112366279 + 13.90455 NA Intergenic L2a|LINE|L2 -6190 NM_199511 151887 Hs.477128 NM_199511 HPRD:10508 CCDC80 DRO1|SSG1|URB|okuribin coiled-coil domain containing 80 protein-coding 13-PTNLD9-TUMOR_peak_31757 chr20 60850029 60850228 + 13.90455 NA intron (NM_014835, intron 6 of 13) AluJo|SINE|Alu -27824 NM_175573 11047 Hs.90107 NM_007002 HPRD:06440 ADRM1 ARM-1|ARM1|GP110 adhesion regulating molecule 1 protein-coding 13-PTNLD9-TUMOR_peak_16347 chr14 78129808 78129946 + 13.90455 NA Intergenic L2c|LINE|L2 44479 NM_006020 8846 Hs.94542 NM_006020 ENSG00000100601 ALKBH1 ABH|ABH1|ALKBH|alkB|hABH alkB, alkylation repair homolog 1 (E. coli) protein-coding 13-PTNLD9-TUMOR_peak_10652 chr11 75210485 75210670 + 13.90455 NA intron (NM_030792, intron 1 of 16) intron (NM_030792, intron 1 of 16) 26022 NM_030792 81544 Hs.503297 NM_030792 HPRD:15159 GDPD5 GDE2|PP1665 glycerophosphodiester phosphodiesterase domain containing 5 protein-coding 13-PTNLD9-TUMOR_peak_51751 chr8 120844838 120845520 + 13.90455 NA promoter-TSS (NM_003184) promoter-TSS (NM_003184) -105 NM_003184 6873 Hs.122752 NM_003184 HPRD:07060 TAF2 CIF150|MRT40|TAF2B|TAFII150 TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa protein-coding 13-PTNLD9-TUMOR_peak_15351 chr14 24422836 24423190 + 13.90425 NA promoter-TSS (NM_001282990) promoter-TSS (NM_001282990) 69 NM_001282991 10901 Hs.528385 NM_021004 HPRD:07484 DHRS4 CR|NRDR|PHCR|PSCD|SCAD-SRL|SDR-SRL|SDR25C1|SDR25C2 dehydrogenase/reductase (SDR family) member 4 protein-coding 13-PTNLD9-TUMOR_peak_52344 chr8 142240915 142241125 + 13.90425 NA intron (NM_001286646, intron 1 of 7) intron (NM_001286646, intron 1 of 7) -2347 NM_001286648 57210 Hs.372492 NM_001080431 ENSG00000022567 SLC45A4 - solute carrier family 45, member 4 protein-coding 13-PTNLD9-TUMOR_peak_52425 chr8 144382898 144383046 + 13.90425 NA TTS (NM_030895) TTS (NM_030895) 9413 NM_030895 79943 Hs.512740 NM_030895 ZNF696 - zinc finger protein 696 protein-coding 13-PTNLD9-TUMOR_peak_11401 chr11 119232162 119232292 + 13.90425 NA intron (NM_001243759, intron 1 of 11) intron (NM_001243759, intron 1 of 11) 2665 NM_171997 9099 Hs.524085 NM_004205 HPRD:05287 USP2 UBP41|USP9 ubiquitin specific peptidase 2 protein-coding 13-PTNLD9-TUMOR_peak_29501 chr2 201217402 201217698 + 13.90425 NA intron (NM_001282743, intron 2 of 11) intron (NM_001282743, intron 2 of 11) 43877 NM_001282744 26010 Hs.120323 NM_015535 HPRD:10916 SPATS2L DNAPTP6|SGNP spermatogenesis associated, serine-rich 2-like protein-coding 13-PTNLD9-TUMOR_peak_28032 chr2 111231080 111231287 + 13.90139 NA promoter-TSS (NR_027145) promoter-TSS (NR_027145) -531 NM_033514 96626 Hs.535619 NM_033514 HPRD:17277 LIMS3 PINCH-3 LIM and senescent cell antigen-like domains 3 protein-coding 13-PTNLD9-TUMOR_peak_39737 chr4 157920354 157920590 + 13.88991 NA Intergenic Intergenic -27926 NR_036641 56034 Hs.570855 NM_016205 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 13-PTNLD9-TUMOR_peak_48769 chr7 106471425 106471686 + 13.88991 NA Intergenic HERVH-int|LTR|ERV1 -34168 NM_001282426 5294 Hs.32942 NM_002649 HPRD:03135 PIK3CG PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma protein-coding 13-PTNLD9-TUMOR_peak_33252 chr22 38453090 38453472 + 13.88991 NA promoter-TSS (NM_012407) promoter-TSS (NM_012407) 19 NM_012407 9463 Hs.180871 NM_012407 HPRD:16176 PICK1 PICK|PRKCABP protein interacting with PRKCA 1 protein-coding 13-PTNLD9-TUMOR_peak_11431 chr11 120418637 120418893 + 13.88991 NA intron (NM_014619, intron 1 of 20) intron (NM_014619, intron 1 of 20) -16380 NM_001282470 2900 Hs.538738 NM_014619 HPRD:02613 GRIK4 EAA1|GRIK|GluK4|KA1 glutamate receptor, ionotropic, kainate 4 protein-coding 13-PTNLD9-TUMOR_peak_17317 chr15 54203153 54203350 + 13.88991 NA Intergenic HERVL18-int|LTR|ERVL -101850 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C (C. elegans) protein-coding 13-PTNLD9-TUMOR_peak_14080 chr12 121628330 121628483 + 13.88991 NA Intergenic Intergenic -19258 NR_046372 5025 Hs.321709 NM_002560 HPRD:09017 P2RX4 P2X4|P2X4R purinergic receptor P2X, ligand-gated ion channel, 4 protein-coding 13-PTNLD9-TUMOR_peak_16213 chr14 71821636 71821794 + 13.88991 NA Intergenic Intergenic -43339 NR_001276 319139 NR_001276 ENSG00000207444 SNORD56B RNU56B small nucleolar RNA, C/D box 56B snoRNA 13-PTNLD9-TUMOR_peak_46122 chr6 137481999 137482349 + 13.88991 NA intron (NM_181309, intron 2 of 5) intron (NM_181309, intron 2 of 5) 12611 NM_052962 116379 Hs.126891 NM_052962 HPRD:05973 IL22RA2 CRF2-10|CRF2-S1|CRF2X|IL-22BP|IL-22R-alpha-2|IL-22RA2|ZCYTOR16 interleukin 22 receptor, alpha 2 protein-coding 13-PTNLD9-TUMOR_peak_51002 chr8 58476928 58477185 + 13.88991 NA Intergenic Intergenic 284954 NR_026772 26138 Hs.159352 NM_015643 ENSG00000215117 LINC00588 C8orf71 long intergenic non-protein coding RNA 588 ncRNA 13-PTNLD9-TUMOR_peak_32295 chr21 38991952 38992105 + 13.88991 NA Intergenic Intergenic 199426 NM_001396 1859 Hs.368240 NM_001396 HPRD:09018 DYRK1A DYRK|DYRK1|HP86|MNB|MNBH|MRD7 dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A protein-coding 13-PTNLD9-TUMOR_peak_10058 chr11 62194080 62194582 + 13.88974 NA Intergenic Intergenic 7824 NM_003357 7356 Hs.523732 NM_003357 HPRD:01884 SCGB1A1 CC10|CC16|CCPBP|CCSP|UGB|UP-1|UP1 secretoglobin, family 1A, member 1 (uteroglobin) protein-coding 13-PTNLD9-TUMOR_peak_35772 chr3 127310568 127311048 + 13.87393 NA Intergenic Intergenic -1206 NR_073377 131601 Hs.6418 NM_016372 HPRD:16318 TPRA1 GPR175|TMEM227|TPRA40 transmembrane protein, adipocyte asscociated 1 protein-coding 13-PTNLD9-TUMOR_peak_15113 chr13 110995661 110995838 + 13.87269 NA intron (NM_001846, intron 3 of 47) intron (NM_001846, intron 3 of 47) 2444 NR_107040 102465872 NR_107040 MIR8073 hsa-mir-8073 microRNA 8073 ncRNA 13-PTNLD9-TUMOR_peak_53013 chr9 33044184 33044581 + 13.87269 NA 3' UTR (NM_018225, exon 12 of 12) 3' UTR (NM_018225, exon 12 of 12) 19173 NM_001539 3301 Hs.445203 NM_001539 HPRD:04159 DNAJA1 DJ-2|DjA1|HDJ2|HSDJ|HSJ2|HSPF4|NEDD7|hDJ-2 DnaJ (Hsp40) homolog, subfamily A, member 1 protein-coding 13-PTNLD9-TUMOR_peak_49378 chr7 140217851 140218036 + 13.87269 NA TTS (NM_015689) TTS (NM_015689) -38574 NM_001291663 23608 Hs.744883 NM_013446 HPRD:09673 MKRN1 RNF61 makorin ring finger protein 1 protein-coding 13-PTNLD9-TUMOR_peak_49529 chr7 144134817 144134999 + 13.87149 NA Intergenic Intergenic -27588 NM_001080413 135935 Hs.558628 NM_001080413 ENSG00000106410 NOBOX OG-2|OG2|OG2X|POF5|TCAG_12042 NOBOX oogenesis homeobox protein-coding 13-PTNLD9-TUMOR_peak_48951 chr7 127658009 127658191 + 13.87149 NA intron (NM_014390, intron 16 of 23) intron (NM_014390, intron 16 of 23) 12902 NM_022143 64101 Hs.655003 NM_022143 HPRD:10060 LRRC4 NGL-2 leucine rich repeat containing 4 protein-coding 13-PTNLD9-TUMOR_peak_36044 chr3 135789889 135790086 + 13.87149 NA intron (NM_181897, intron 5 of 12) intron (NM_181897, intron 5 of 12) 48410 NM_181897 5523 Hs.518155 NM_002718 HPRD:09225 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2, regulatory subunit B'', alpha protein-coding 13-PTNLD9-TUMOR_peak_20285 chr17 3716194 3716361 + 13.86151 NA 3' UTR (NM_001114118, exon 13 of 13) 3' UTR (NM_001114118, exon 13 of 13) -11740 NM_002208 3682 Hs.513867 NM_002208 HPRD:05249 ITGAE CD103|HUMINAE integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide) protein-coding 13-PTNLD9-TUMOR_peak_49470 chr7 142823267 142823541 + 13.86151 NA Intergenic LTR24B|LTR|ERV1 -5770 NM_002652 5304 Hs.99949 NM_002652 HPRD:07179 PIP GCDFP-15|GCDFP15|GPIP4 prolactin-induced protein protein-coding 13-PTNLD9-TUMOR_peak_24915 chr19 39260495 39260651 + 13.86151 NA Intergenic CpG 3584 NM_002307 3963 Hs.702546 NM_002307 HPRD:09002 LGALS7 GAL7|LGALS7A lectin, galactoside-binding, soluble, 7 protein-coding 13-PTNLD9-TUMOR_peak_40605 chr5 35884300 35884456 + 13.86151 NA Intergenic L2c|LINE|L2 27401 NR_120485 3575 Hs.591742 NM_002185 HPRD:00893 IL7R CD127|CDW127|IL-7R-alpha|IL7RA|ILRA interleukin 7 receptor protein-coding 13-PTNLD9-TUMOR_peak_2932 chr1 114813037 114813282 + 13.86151 NA Intergenic Intergenic -116687 NM_001270805 148281 Hs.370963 NM_205848 HPRD:09654 SYT6 sytVI synaptotagmin VI protein-coding 13-PTNLD9-TUMOR_peak_50187 chr8 18891917 18892324 + 13.86151 NA Intergenic Intergenic -20924 NM_015310 23362 Hs.434255 NM_015310 HPRD:11462 PSD3 EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_12131 chr12 11323723 11323909 + 13.86151 NA promoter-TSS (NM_001271592) promoter-TSS (NM_001271592) 36 NM_001271592 100129361 Hs.521817 NM_001271592 LOC100129361 - chromosome X open reading frame 69-like protein-coding 13-PTNLD9-TUMOR_peak_52151 chr8 134062012 134062251 + 13.86151 NA intron (NM_001045556, intron 5 of 8) intron (NM_001045556, intron 5 of 8) -3305 NR_107002 102466865 NR_107002 MIR7848 hsa-mir-7848 microRNA 7848 ncRNA 13-PTNLD9-TUMOR_peak_29512 chr2 201473784 201473976 + 13.86151 NA intron (NM_001159, intron 11 of 34) intron (NM_001159, intron 11 of 34) 23149 NM_001159 316 Hs.406238 NM_001159 HPRD:07537 AOX1 AO|AOH1 aldehyde oxidase 1 protein-coding 13-PTNLD9-TUMOR_peak_31047 chr20 39135275 39135486 + 13.86151 NA Intergenic Intergenic 182500 NM_005461 9935 Hs.169487 NM_005461 HPRD:07129 MAFB KRML|MCTO v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog B protein-coding 13-PTNLD9-TUMOR_peak_4874 chr1 197908292 197908505 + 13.86151 NA Intergenic Tigger3a|DNA|TcMar-Tigger 21881 NM_020204 56956 Hs.442578 NM_020204 HPRD:07299 LHX9 - LIM homeobox 9 protein-coding 13-PTNLD9-TUMOR_peak_30042 chr2 234259468 234259667 + 13.86151 NA Intergenic Intergenic -3586 NM_152879 8527 Hs.471675 NM_003648 HPRD:03492 DGKD DGKdelta|dgkd-2 diacylglycerol kinase, delta 130kDa protein-coding 13-PTNLD9-TUMOR_peak_19519 chr16 65692297 65692493 + 13.85851 NA Intergenic Intergenic -82192 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 13-PTNLD9-TUMOR_peak_39322 chr4 129309163 129309339 + 13.85851 NA Intergenic Intergenic -99267 NM_006320 10424 Hs.507910 NM_006320 HPRD:09665 PGRMC2 DG6|PMBP progesterone receptor membrane component 2 protein-coding 13-PTNLD9-TUMOR_peak_22801 chr18 21851593 21851756 + 13.85369 NA 5' UTR (NM_018030, exon 1 of 14) 5' UTR (NM_018030, exon 1 of 14) 522 NM_018030 114876 Hs.370725 NM_018030 HPRD:09472 OSBPL1A ORP-1|ORP1|OSBPL1B oxysterol binding protein-like 1A protein-coding 13-PTNLD9-TUMOR_peak_23830 chr19 8177873 8178465 + 13.85369 NA intron (NM_032447, intron 29 of 62) AluJo|SINE|Alu 34216 NM_032447 84467 Hs.370362 NM_032447 HPRD:10538 FBN3 - fibrillin 3 protein-coding 13-PTNLD9-TUMOR_peak_37823 chr4 7219317 7219506 + 13.85369 NA intron (NM_020777, intron 1 of 26) intron (NM_020777, intron 1 of 26) 25037 NM_020777 57537 Hs.479099 NM_020777 HPRD:12099 SORCS2 - sortilin-related VPS10 domain containing receptor 2 protein-coding 13-PTNLD9-TUMOR_peak_29445 chr2 197098234 197098385 + 13.85369 NA intron (NM_020760, intron 21 of 28) intron (NM_020760, intron 21 of 28) -26439 NR_110225 101927482 Hs.191841 NR_110225 ENSG00000229056 LOC101927482 - uncharacterized LOC101927482 ncRNA 13-PTNLD9-TUMOR_peak_40417 chr5 16545199 16545454 + 13.85369 NA intron (NM_001034850, intron 3 of 8) intron (NM_001034850, intron 3 of 8) -36219 NM_019000 54463 Hs.481704 NM_019000 HPRD:07879 FAM134B JK-1|JK1 family with sequence similarity 134, member B protein-coding 13-PTNLD9-TUMOR_peak_14227 chr12 125167833 125167964 + 13.85369 NA Intergenic Intergenic -115888 NM_001206654 9612 Hs.137510 NM_006312 HPRD:02910 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 13-PTNLD9-TUMOR_peak_1424 chr1 43402308 43402493 + 13.84686 NA intron (NM_006516, intron 2 of 9) intron (NM_006516, intron 2 of 9) -22320 NR_033967 440584 Hs.260928 NR_033967 ENSG00000227533 SLC2A1-AS1 - SLC2A1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_21195 chr17 43179226 43179428 + 13.84686 NA intron (NM_021079, intron 8 of 11) intron (NM_021079, intron 8 of 11) 12474 NR_106842 102465470 NR_106842 MIR6784 hsa-mir-6784 microRNA 6784 ncRNA 13-PTNLD9-TUMOR_peak_14000 chr12 119614198 119614409 + 13.83616 NA Intergenic Intergenic -2292 NM_014365 26353 Hs.400095 NM_014365 HPRD:06420 HSPB8 CMT2L|DHMN2|E2IG1|H11|HMN2|HMN2A|HSP22 heat shock 22kDa protein 8 protein-coding 13-PTNLD9-TUMOR_peak_54388 chr9 111774661 111774811 + 13.83616 NA intron (NM_003798, intron 1 of 18) intron (NM_003798, intron 1 of 18) 1138 NM_003798 8727 Hs.58488 NM_003798 HPRD:09210 CTNNAL1 ACRP|CLLP|alpha-CATU catenin (cadherin-associated protein), alpha-like 1 protein-coding 13-PTNLD9-TUMOR_peak_52560 chr8 146127399 146127749 + 13.83616 NA promoter-TSS (NM_001109689) promoter-TSS (NM_001109689) -728 NM_021061 58500 Hs.532277 NM_021061 HPRD:15758 ZNF250 ZFP647|ZNF647 zinc finger protein 250 protein-coding 13-PTNLD9-TUMOR_peak_50154 chr8 17105068 17105231 + 13.82890 NA promoter-TSS (NM_013354) promoter-TSS (NM_013354) 748 NM_152415 137492 Hs.343873 NM_152415 HPRD:13410 VPS37A HCRP1|PQBP2|SPG53 vacuolar protein sorting 37 homolog A (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_56528 chrX 134166107 134166539 + 13.82881 NA promoter-TSS (NM_001078171) promoter-TSS (NM_001078171) -10 NM_001078171 8933 Hs.522789 NM_003928 HPRD:02197 FAM127A CXX1|MAR8C|MART8C|Mar8|Mart8 family with sequence similarity 127, member A protein-coding 13-PTNLD9-TUMOR_peak_25654 chr19 55431162 55431335 + 13.82881 NA Intergenic LTR13|LTR|ERVK 13740 NM_004829 9437 Hs.97084 NM_004829 HPRD:05167 NCR1 CD335|LY94|NK-p46|NKP46 natural cytotoxicity triggering receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_13325 chr12 71644294 71644508 + 13.82881 NA Intergenic L2b|LINE|L2 -92622 NM_004616 7103 Hs.170563 NM_004616 HPRD:02865 TSPAN8 CO-029|TM4SF3 tetraspanin 8 protein-coding 13-PTNLD9-TUMOR_peak_30895 chr20 34583054 34583220 + 13.82881 NA intron (NM_080834, intron 8 of 11) intron (NM_080834, intron 8 of 11) 26608 NM_001207076 140894 Hs.732697 NM_080834 HPRD:09838 CNBD2 C20orf152|CNMPD1|dJ954P9.1 cyclic nucleotide binding domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_25135 chr19 45879587 45879869 + 13.82881 NA Intergenic MLT1D|LTR|ERVL-MaLR -5883 NM_001130867 2068 Hs.487294 NM_000400 HPRD:00530 ERCC2 COFS2|EM9|TFIIH|TTD|XPD excision repair cross-complementation group 2 protein-coding 13-PTNLD9-TUMOR_peak_26459 chr2 29256146 29256371 + 13.82881 NA intron (NM_199280, intron 15 of 19) intron (NM_199280, intron 15 of 19) 40869 NM_001029883 388939 Hs.354243 NM_001029883 ENSG00000179270 C2orf71 RP54 chromosome 2 open reading frame 71 protein-coding 13-PTNLD9-TUMOR_peak_20848 chr17 31439817 31440193 + 13.82881 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 121123 NM_173847 124912 Hs.434112 NM_173847 HPRD:15420 SPACA3 1700025M08Rik|ALLP17|CT54|LYC3|LYZL3|SLLP1 sperm acrosome associated 3 protein-coding 13-PTNLD9-TUMOR_peak_10582 chr11 73006294 73006709 + 13.82881 NA intron (NM_001277208, intron 1 of 1) intron (NM_001277208, intron 1 of 1) -13162 NM_014786 9828 Hs.533719 NM_014786 HPRD:10658 ARHGEF17 P164RHOGEF|TEM4|p164-RhoGEF Rho guanine nucleotide exchange factor (GEF) 17 protein-coding 13-PTNLD9-TUMOR_peak_22248 chr17 79030981 79031349 + 13.82747 NA intron (NM_006340, intron 2 of 14) intron (NM_006340, intron 2 of 14) 22218 NM_006340 10458 Hs.128316 NM_006340 HPRD:05686 BAIAP2 BAP2|FLAF3|IRSP53 BAI1-associated protein 2 protein-coding 13-PTNLD9-TUMOR_peak_10017 chr11 61533747 61534081 + 13.81593 NA intron (NM_013279, intron 3 of 25) L2|LINE|L2 -8778 NR_026882 26070 Hs.564254 NR_026882 ENSG00000124915 DKFZP434K028 - uncharacterized LOC26070 ncRNA 13-PTNLD9-TUMOR_peak_11416 chr11 119992604 119992796 + 13.81242 NA intron (NM_012101, intron 5 of 8) intron (NM_012101, intron 5 of 8) 16163 NM_012101 23650 Hs.504115 NM_012101 HPRD:10280 TRIM29 ATDC tripartite motif containing 29 protein-coding 13-PTNLD9-TUMOR_peak_41795 chr5 114715336 114715570 + 13.81242 NA Intergenic Intergenic -82995 NM_001040440 153733 Hs.436121 NM_152549 HPRD:11346 CCDC112 MBC1 coiled-coil domain containing 112 protein-coding 13-PTNLD9-TUMOR_peak_2534 chr1 94527557 94527801 + 13.81242 NA intron (NM_000350, intron 13 of 49) intron (NM_000350, intron 13 of 49) 59026 NM_000350 24 Hs.416707 NM_000350 HPRD:03408 ABCA4 ABC10|ABCR|ARMD2|CORD3|FFM|RMP|RP19|STGD|STGD1 ATP-binding cassette, sub-family A (ABC1), member 4 protein-coding 13-PTNLD9-TUMOR_peak_1763 chr1 51984426 51984959 + 13.81242 NA intron (NM_001981, intron 1 of 24) CpG 303 NM_001981 2060 Hs.83722 NM_001981 HPRD:08968 EPS15 AF-1P|AF1P|MLLT5 epidermal growth factor receptor pathway substrate 15 protein-coding 13-PTNLD9-TUMOR_peak_11725 chr11 133903982 133904122 + 13.81242 NA intron (NR_027276, intron 1 of 2) intron (NR_027276, intron 1 of 2) 1885 NR_027276 100128239 Hs.423734 NR_027276 ENSG00000204241 LOC100128239 - uncharacterized LOC100128239 ncRNA 13-PTNLD9-TUMOR_peak_4545 chr1 178653958 178654093 + 13.81242 NA Intergenic Intergenic 7141 NR_039622 100616328 NR_039622 miRBase:MI0016763 MIR4424 - microRNA 4424 ncRNA 13-PTNLD9-TUMOR_peak_51724 chr8 119856024 119856241 + 13.81242 NA Intergenic LTR82A|LTR|ERVL 108251 NM_002546 4982 Hs.81791 NM_002546 HPRD:04032 TNFRSF11B OCIF|OPG|TR1 tumor necrosis factor receptor superfamily, member 11b protein-coding 13-PTNLD9-TUMOR_peak_32624 chr22 16200153 16200312 + 13.80704 NA Intergenic CpG -7223 NR_122113 503637 Hs.744284 NR_122113 DUXAP8 - double homeobox A pseudogene 8 pseudo 13-PTNLD9-TUMOR_peak_13678 chr12 105956008 105956413 + 13.80704 NA Intergenic Intergenic -141771 NR_110108 101929110 Hs.145944 NR_110108 ENSG00000257859 CASC18 - cancer susceptibility candidate 18 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_34239 chr3 36404489 36404634 + 13.80704 NA Intergenic MER4B-int|LTR|ERV1 -17418 NM_001292049 6769 Hs.56045 NM_003149 HPRD:11890 STAC STAC1 SH3 and cysteine rich domain protein-coding 13-PTNLD9-TUMOR_peak_48268 chr7 90236616 90236792 + 13.80704 NA intron (NM_001287135, intron 2 of 14) intron (NM_001287135, intron 2 of 14) 11028 NM_001287135 5218 Hs.258576 NM_012395 HPRD:15121 CDK14 PFTAIRE1|PFTK1 cyclin-dependent kinase 14 protein-coding 13-PTNLD9-TUMOR_peak_34816 chr3 62951062 62951309 + 13.80704 NA Intergenic Intergenic -90121 NM_183393 8618 Hs.654933 NM_003716 HPRD:05236 CADPS CADPS1|CAPS|CAPS1 Ca++-dependent secretion activator protein-coding 13-PTNLD9-TUMOR_peak_34941 chr3 71586370 71586716 + 13.80704 NA intron (NM_001012505, intron 2 of 6) intron (NM_001012505, intron 2 of 6) 4697 NR_031697 100302112 NR_031697 miRBase:MI0006431 MIR1284 MIRN1284|hsa-mir-1284 microRNA 1284 ncRNA 13-PTNLD9-TUMOR_peak_21214 chr17 43275276 43275485 + 13.80704 NA Intergenic Intergenic -23912 NM_005892 752 Hs.100217 NM_005892 HPRD:06876 FMNL1 C17orf1|C17orf1B|FHOD4|FMNL|KW-13 formin-like 1 protein-coding 13-PTNLD9-TUMOR_peak_43227 chr5 177439302 177439459 + 13.80704 NA intron (NR_038353, intron 2 of 11) intron (NR_038353, intron 2 of 11) 5413 NR_038353 653316 Hs.652193 NM_001079527 ENSG00000204677 FAM153C NY-REN-7-like family with sequence similarity 153, member C, pseudogene pseudo 13-PTNLD9-TUMOR_peak_36340 chr3 149172631 149172899 + 13.80704 NA Intergenic Intergenic -19603 NM_004617 7104 Hs.133527 NM_004617 TM4SF4 ILTMP|il-TMP transmembrane 4 L six family member 4 protein-coding 13-PTNLD9-TUMOR_peak_12680 chr12 48229682 48229874 + 13.80704 NA Intergenic Intergenic -16015 NM_015401 51564 Hs.200063 NM_015401 HPRD:09133 HDAC7 HD7A|HDAC7A histone deacetylase 7 protein-coding 13-PTNLD9-TUMOR_peak_23837 chr19 8341536 8341744 + 13.80704 NA Intergenic L2|LINE|L2 31600 NM_016579 51293 Hs.558499 NM_016579 HPRD:05929 CD320 8D6|8D6A|TCBLR CD320 molecule protein-coding 13-PTNLD9-TUMOR_peak_16647 chr14 104060818 104060967 + 13.80704 NA Intergenic Intergenic 31593 NM_032374 84334 Hs.598441 NM_032374 APOPT1 APOP1|C14orf153 apoptogenic 1, mitochondrial protein-coding 13-PTNLD9-TUMOR_peak_37472 chr3 197148687 197148926 + 13.80408 NA Intergenic AluSx1|SINE|Alu -122663 NM_001290983 1739 Hs.292549 NM_004087 HPRD:03007 DLG1 DLGH1|SAP-97|SAP97|dJ1061C18.1.1|hdlg discs, large homolog 1 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_18634 chr16 16242566 16242780 + 13.80408 NA TTS (NM_001171) TTS (NM_001171) 74655 NM_001171 368 Hs.442182 NM_001171 HPRD:04453 ABCC6 ABC34|ARA|EST349056|GACI2|MLP1|MOAT-E|MOATE|MRP6|PXE|PXE1|URG7 ATP-binding cassette, sub-family C (CFTR/MRP), member 6 protein-coding 13-PTNLD9-TUMOR_peak_23314 chr18 56719055 56719351 + 13.80408 NA intron (NR_024021, intron 4 of 4) intron (NR_024021, intron 4 of 4) 16232 NR_024021 390858 Hs.722775 NR_024021 OACYLP ACYL3P O-acyltransferase like, pseudogene pseudo 13-PTNLD9-TUMOR_peak_527 chr1 16508460 16508680 + 13.80408 NA Intergenic Intergenic -25988 NM_004431 1969 Hs.171596 NM_004431 HPRD:01494 EPHA2 ARCC2|CTPA|CTPP1|CTRCT6|ECK EPH receptor A2 protein-coding 13-PTNLD9-TUMOR_peak_45404 chr6 57339773 57339941 + 13.80408 NA intron (NM_000947, intron 7 of 14) intron (NM_000947, intron 7 of 14) 157442 NM_001282487 5558 Hs.654580 NM_000947 PRIM2 PRIM2A|p58 primase, DNA, polypeptide 2 (58kDa) protein-coding 13-PTNLD9-TUMOR_peak_4257 chr1 165576005 165576214 + 13.80408 NA Intergenic LTR13A|LTR|ERVK -24001 NM_004528 4259 Hs.191734 NM_004528 HPRD:05192 MGST3 GST-III microsomal glutathione S-transferase 3 protein-coding 13-PTNLD9-TUMOR_peak_56683 chrX 153152424 153152725 + 13.80024 NA promoter-TSS (NM_001278116) promoter-TSS (NM_001278116) -946 NM_001278116 3897 Hs.522818 NM_000425 HPRD:02394 L1CAM CAML1|CD171|HSAS|HSAS1|MASA|MIC5|N-CAM-L1|N-CAML1|NCAM-L1|S10|SPG1 L1 cell adhesion molecule protein-coding 13-PTNLD9-TUMOR_peak_45001 chr6 41885333 41885500 + 13.80024 NA intron (NM_004275, intron 1 of 3) MER113|DNA|hAT-Charlie 3461 NM_004275 9477 Hs.278434 NM_004275 HPRD:15638 MED20 PRO0213|TRFP mediator complex subunit 20 protein-coding 13-PTNLD9-TUMOR_peak_42332 chr5 140012845 140013084 + 13.79340 NA promoter-TSS (NM_000591) promoter-TSS (NM_000591) 71 NM_000591 929 Hs.163867 NM_000591 HPRD:01151 CD14 - CD14 molecule protein-coding 13-PTNLD9-TUMOR_peak_37311 chr3 194041651 194041871 + 13.79340 NA Intergenic Intergenic -11168 NR_024480 100131551 Hs.128066 NR_024480 ENSG00000214145 LINC00887 - long intergenic non-protein coding RNA 887 ncRNA 13-PTNLD9-TUMOR_peak_16898 chr15 30217662 30217937 + 13.79340 NA intron (NM_001301025, intron 2 of 28) intron (NM_001301025, intron 2 of 28) 43203 NM_001301025 7082 Hs.743990 NM_003257 HPRD:03002 TJP1 ZO-1 tight junction protein 1 protein-coding 13-PTNLD9-TUMOR_peak_10476 chr11 70090876 70091119 + 13.78724 NA Intergenic L2|LINE|L2 -25809 NR_045286 8500 Hs.530749 NM_003626 HPRD:11451 PPFIA1 LIP.1|LIP1|LIPRIN protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_47902 chr7 73294789 73295120 + 13.78724 NA Intergenic Intergenic 19465 NM_182504 135886 Hs.647026 NM_182504 HPRD:15662 WBSCR28 - Williams-Beuren syndrome chromosome region 28 protein-coding 13-PTNLD9-TUMOR_peak_33088 chr22 30608679 30608861 + 13.78724 NA Intergenic Intergenic 34070 NM_001257135 3976 Hs.2250 NM_002309 HPRD:08869 LIF CDF|DIA|HILDA|MLPLI leukemia inhibitory factor protein-coding 13-PTNLD9-TUMOR_peak_33585 chr3 4799736 4799918 + 13.78724 NA intron (NM_001168272, intron 43 of 60) intron (NM_001168272, intron 43 of 60) -6553 NR_004428 100126791 Hs.663059 NR_004428 ENSG00000235947 EGOT EGO|NCRNA00190 eosinophil granule ontogeny transcript (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_43136 chr5 175236874 175237115 + 13.78724 NA intron (NM_006650, intron 2 of 4) intron (NM_006650, intron 2 of 4) 13384 NM_006650 10814 Hs.193235 NM_006650 HPRD:09234 CPLX2 921-L|CPX-2|CPX2|Hfb1 complexin 2 protein-coding 13-PTNLD9-TUMOR_peak_26488 chr2 30457004 30457426 + 13.78622 NA intron (NM_030915, intron 1 of 2) intron (NM_030915, intron 1 of 2) 2818 NM_030915 81606 Hs.567598 NM_030915 HPRD:13965 LBH - limb bud and heart development protein-coding 13-PTNLD9-TUMOR_peak_4186 chr1 162343711 162343929 + 13.77157 NA 3' UTR (NM_182581, exon 3 of 3) 3' UTR (NM_182581, exon 3 of 3) 2824 NM_182581 284680 Hs.97784 NM_182581 C1orf111 - chromosome 1 open reading frame 111 protein-coding 13-PTNLD9-TUMOR_peak_27740 chr2 97433964 97434269 + 13.77157 NA intron (NM_020184, intron 1 of 6) L2b|LINE|L2 7477 NM_020184 26504 Hs.175043 NM_020184 HPRD:07420 CNNM4 ACDP4 cyclin and CBS domain divalent metal cation transport mediator 4 protein-coding 13-PTNLD9-TUMOR_peak_31793 chr20 61603797 61603961 + 13.76811 NA Intergenic Intergenic 19880 NM_022082 63910 Hs.512686 NM_022082 HPRD:12777 SLC17A9 C20orf59|VNUT solute carrier family 17 (vesicular nucleotide transporter), member 9 protein-coding 13-PTNLD9-TUMOR_peak_18096 chr15 101273426 101273697 + 13.76811 NA Intergenic Intergenic 130806 NM_198243 140460 Hs.31845 NM_024708 HPRD:10674 ASB7 - ankyrin repeat and SOCS box containing 7 protein-coding 13-PTNLD9-TUMOR_peak_46757 chr7 4425823 4426115 + 13.76811 NA Intergenic THE1A|LTR|ERVL-MaLR 256652 NM_001079653 221935 Hs.653013 NM_152744 HPRD:07388 SDK1 - sidekick cell adhesion molecule 1 protein-coding 13-PTNLD9-TUMOR_peak_4400 chr1 172009750 172009874 + 13.76811 NA intron (NM_001136127, intron 7 of 19) L2c|LINE|L2 -98136 NR_036066 100422882 NR_036066 MIR3120 - microRNA 3120 ncRNA 13-PTNLD9-TUMOR_peak_28289 chr2 121515872 121516041 + 13.76811 NA Intergenic Intergenic -38911 NM_005270 2736 Hs.111867 NM_005270 HPRD:01312 GLI2 HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 13-PTNLD9-TUMOR_peak_17064 chr15 40337365 40337538 + 13.76709 NA intron (NR_040059, intron 1 of 3) intron (NR_040059, intron 1 of 3) 5939 NR_040059 100131089 Hs.386000 NR_040059 ENSG00000248508 SRP14-AS1 - SRP14 antisense RNA1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_14334 chr12 132349827 132350101 + 13.76709 NA Intergenic L1ME3|LINE|L1 -29315 NM_003565 8408 Hs.47061 NM_003565 HPRD:11933 ULK1 ATG1|ATG1A|UNC51|Unc51.1|hATG1 unc-51 like autophagy activating kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_39421 chr4 140216921 140217087 + 13.76709 NA 5' UTR (NM_002494, exon 2 of 5) 5' UTR (NM_002494, exon 2 of 5) 5360 NM_001184991 4717 Hs.84549 NM_002494 HPRD:11959 NDUFC1 KFYI NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa protein-coding 13-PTNLD9-TUMOR_peak_17389 chr15 60694456 60694600 + 13.76709 NA Intergenic AluSc|SINE|Alu -4343 NM_004039 302 Hs.511605 NM_004039 HPRD:01061 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 13-PTNLD9-TUMOR_peak_41797 chr5 114750226 114750393 + 13.76709 NA Intergenic Intergenic -117851 NM_001040440 153733 Hs.436121 NM_152549 HPRD:11346 CCDC112 MBC1 coiled-coil domain containing 112 protein-coding 13-PTNLD9-TUMOR_peak_13775 chr12 109434847 109435026 + 13.76709 NA intron (NM_018711, intron 1 of 14) L1PA2|LINE|L1 24109 NM_018711 55530 Hs.4221 NM_018711 HPRD:13224 SVOP - SV2 related protein homolog (rat) protein-coding 13-PTNLD9-TUMOR_peak_31376 chr20 48227748 48227939 + 13.76709 NA Intergenic Intergenic -43136 NM_000961 5740 Hs.302085 NM_000961 HPRD:09046 PTGIS CYP8|CYP8A1|PGIS|PTGI prostaglandin I2 (prostacyclin) synthase protein-coding 13-PTNLD9-TUMOR_peak_28811 chr2 157311892 157312133 + 13.76709 NA intron (NM_000408, intron 1 of 16) intron (NM_000408, intron 1 of 16) 19112 NM_000408 2820 Hs.512382 NM_000408 HPRD:00715 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 (mitochondrial) protein-coding 13-PTNLD9-TUMOR_peak_4769 chr1 185408872 185409171 + 13.76709 NA Intergenic MIR|SINE|MIR -104850 NR_038424 100288079 Hs.131220 NR_038424 ENSG00000261024 GS1-279B7.1 - microtubule-associated protein 1 light chain 3 beta pseudogene pseudo 13-PTNLD9-TUMOR_peak_30663 chr20 25291034 25291264 + 13.75916 NA intron (NM_001042472, intron 6 of 12) intron (NM_001042472, intron 6 of 12) 62443 NM_002862 5834 Hs.368157 NM_002862 HPRD:00720 PYGB GPBB phosphorylase, glycogen; brain protein-coding 13-PTNLD9-TUMOR_peak_3587 chr1 150979288 150979469 + 13.75584 NA promoter-TSS (NM_001040217) promoter-TSS (NM_001040217) 7 NM_001040217 55793 Hs.743952 NM_018379 HPRD:07746 FAM63A - family with sequence similarity 63, member A protein-coding 13-PTNLD9-TUMOR_peak_36821 chr3 177240004 177240158 + 13.75418 NA intron (NR_047568, intron 1 of 3) intron (NR_047568, intron 1 of 3) 80372 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 13-PTNLD9-TUMOR_peak_42454 chr5 142886879 142887137 + 13.75418 NA Intergenic Intergenic -71931 NM_001018075 2908 Hs.122926 NM_000176 HPRD:00679 NR3C1 GCCR|GCR|GR|GRL nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) protein-coding 13-PTNLD9-TUMOR_peak_34613 chr3 50662172 50662330 + 13.75418 NA intron (NM_001243925, intron 2 of 10) intron (NM_001243925, intron 2 of 10) 7689 NM_001243925 7867 Hs.234521 NM_004635 HPRD:03678 MAPKAPK3 3PK|MAPKAP-K3|MAPKAP3|MAPKAPK-3|MK-3 mitogen-activated protein kinase-activated protein kinase 3 protein-coding 13-PTNLD9-TUMOR_peak_27843 chr2 101663887 101664093 + 13.75418 NA intron (NM_001102426, intron 5 of 19) intron (NM_001102426, intron 5 of 19) 45299 NM_001098577 6160 Hs.469473 NM_000993 HPRD:17994 RPL31 L31 ribosomal protein L31 protein-coding 13-PTNLD9-TUMOR_peak_10957 chr11 94841449 94841587 + 13.75418 NA intron (NM_015036, intron 1 of 1) intron (NM_015036, intron 1 of 1) 18544 NM_015036 23052 Hs.167115 NM_015036 ENSG00000149218 ENDOD1 - endonuclease domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_216 chr1 6714082 6714240 + 13.75418 NA intron (NM_018198, intron 4 of 15) intron (NM_018198, intron 4 of 15) 28951 NM_001195752 90326 Hs.689006 NM_138350 HPRD:18178 THAP3 - THAP domain containing, apoptosis associated protein 3 protein-coding 13-PTNLD9-TUMOR_peak_43949 chr6 16636363 16636767 + 13.75418 NA intron (NM_001128164, intron 3 of 7) intron (NM_001128164, intron 3 of 7) 125156 NM_001128164 6310 Hs.434961 NM_000332 HPRD:03333 ATXN1 ATX1|D6S504E|SCA1 ataxin 1 protein-coding 13-PTNLD9-TUMOR_peak_40326 chr5 10695291 10695421 + 13.75274 NA intron (NM_004394, intron 2 of 3) intron (NM_004394, intron 2 of 3) 66031 NM_004394 1611 Hs.75189 NM_004394 HPRD:02977 DAP - death-associated protein protein-coding 13-PTNLD9-TUMOR_peak_40517 chr5 31161886 31162160 + 13.75274 NA Intergenic Intergenic -31739 NM_004932 1004 Hs.124776 NM_004932 HPRD:04305 CDH6 CAD6|KCAD cadherin 6, type 2, K-cadherin (fetal kidney) protein-coding 13-PTNLD9-TUMOR_peak_21364 chr17 46662843 46662979 + 13.75274 NA Intergenic Intergenic -4871 NR_033201 404266 Hs.660088 NR_033201 ENSG00000233101 HOXB-AS3 - HOXB cluster antisense RNA 3 ncRNA 13-PTNLD9-TUMOR_peak_13124 chr12 63195547 63195845 + 13.75274 NA exon (NM_020700, exon 3 of 10) exon (NM_020700, exon 3 of 10) 132969 NM_020700 57460 Hs.435479 NM_020700 ENSG00000111110 PPM1H ARHCL1|NERPP-2C|URCC2 protein phosphatase, Mg2+/Mn2+ dependent, 1H protein-coding 13-PTNLD9-TUMOR_peak_53959 chr9 93195760 93196182 + 13.75274 NA promoter-TSS (NR_109795) promoter-TSS (NR_109795) -200 NR_109795 101927873 Hs.598482 NR_109795 LINC01508 - long intergenic non-protein coding RNA 1508 ncRNA 13-PTNLD9-TUMOR_peak_40745 chr5 43422378 43422556 + 13.75274 NA Intergenic Intergenic -9979 NM_148672 56477 Hs.656904 NM_019846 CCL28 CCK1|MEC|SCYA28 chemokine (C-C motif) ligand 28 protein-coding 13-PTNLD9-TUMOR_peak_27038 chr2 62805184 62805446 + 13.75274 NA Intergenic Intergenic -71711 NM_198276 200728 Hs.308028 NM_198276 HPRD:15528 TMEM17 - transmembrane protein 17 protein-coding 13-PTNLD9-TUMOR_peak_50851 chr8 47829405 47829575 + 13.75274 NA Intergenic Intergenic 76982 NR_027013 497634 Hs.406982 NR_027012 ENSG00000253314 LINC00293 BEYLA|NCRNA00293 long intergenic non-protein coding RNA 293 ncRNA 13-PTNLD9-TUMOR_peak_28332 chr2 123065393 123065685 + 13.75274 NA Intergenic Intergenic 552418 NR_048557 7247 Hs.75066 NM_004622 HPRD:08993 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 13-PTNLD9-TUMOR_peak_25884 chr1_gl000192_random 253419 253661 + 13.75274 NA intron (NR_103556, intron 17 of 45) MLT1D|LTR|ERVL-MaLR 153970 NR_103556 100288805 Hs.648712 NR_049745 HYDIN2 HYDINP1 HYDIN2, axonemal central pair apparatus protein (pseudogene) pseudo 13-PTNLD9-TUMOR_peak_42684 chr5 150839301 150839531 + 13.75274 NA intron (NM_078483, intron 2 of 10) intron (NM_078483, intron 2 of 10) 12253 NM_078483 206358 Hs.269004 NM_078483 HPRD:07584 SLC36A1 Dct1|LYAAT1|PAT1|TRAMD3 solute carrier family 36 (proton/amino acid symporter), member 1 protein-coding 13-PTNLD9-TUMOR_peak_34342 chr3 42304085 42304343 + 13.75274 NA intron (NM_001174138, intron 2 of 2) intron (NM_001174138, intron 2 of 2) 1225 NM_001174138 885 Hs.458426 NM_000729 HPRD:00321 CCK - cholecystokinin protein-coding 13-PTNLD9-TUMOR_peak_51969 chr8 128234875 128235422 + 13.74546 NA Intergenic Intergenic -3635 NR_108049 100507056 Hs.343864 NR_108049 ENSG00000247844 CCAT1 CARLo-5 colon cancer associated transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_5802 chr1 230985271 230985506 + 13.74546 NA intron (NM_032800, intron 2 of 3) intron (NM_032800, intron 2 of 3) 6394 NM_001136495 84886 Hs.520494 NM_032800 HPRD:13359 C1orf198 - chromosome 1 open reading frame 198 protein-coding 13-PTNLD9-TUMOR_peak_23594 chr19 1062876 1063020 + 13.74546 NA intron (NM_019112, intron 42 of 46) intron (NM_019112, intron 42 of 46) -2974 NM_001258328 23526 Hs.465521 NM_012292 HPRD:03097 HMHA1 ARHGAP45|HA-1|HLA-HA1 histocompatibility (minor) HA-1 protein-coding 13-PTNLD9-TUMOR_peak_20005 chr16 85962930 85963259 + 13.73283 NA Intergenic Intergenic 11141 NR_106832 102466732 NR_106832 MIR6774 hsa-mir-6774 microRNA 6774 ncRNA 13-PTNLD9-TUMOR_peak_23113 chr18 45856873 45857152 + 13.73283 NA Intergenic Intergenic -193332 NM_001039360 201501 Hs.515388 NM_001039360 ENSG00000184828 ZBTB7C APM-1|APM1|ZBTB36|ZNF857C zinc finger and BTB domain containing 7C protein-coding 13-PTNLD9-TUMOR_peak_16322 chr14 77419761 77420217 + 13.72692 NA Intergenic Intergenic 75053 NM_024496 64207 Hs.179260 NM_024496 HPRD:10713 IRF2BPL C14orf4|EAP1 interferon regulatory factor 2 binding protein-like protein-coding 13-PTNLD9-TUMOR_peak_41554 chr5 95297010 95297192 + 13.72518 NA intron (NM_012081, intron 1 of 11) CpG 674 NM_012081 22936 Hs.192221 NM_012081 HPRD:11798 ELL2 - elongation factor, RNA polymerase II, 2 protein-coding 13-PTNLD9-TUMOR_peak_50009 chr8 7468699 7468906 + 13.72518 NA Intergenic CpG -36882 NR_046343 441317 Hs.715411 NM_001136572 FAM90A7P FAM90A7 putative protein FAM90A7 pseudo 13-PTNLD9-TUMOR_peak_29880 chr2 220462754 220463012 + 13.72179 NA exon (NM_052902, exon 2 of 25) exon (NM_052902, exon 2 of 25) 287 NM_052902 114790 Hs.22410 NM_052902 HPRD:06207 STK11IP LIP1|LKB1IP|STK11IP1 serine/threonine kinase 11 interacting protein protein-coding 13-PTNLD9-TUMOR_peak_22216 chr17 78042537 78042739 + 13.72179 NA intron (NM_017950, intron 10 of 19) MamRep605|Unknown|Unknown 32207 NM_017950 55036 Hs.202542 NM_017950 ENSG00000141519 CCDC40 CILD15|FAP172 coiled-coil domain containing 40 protein-coding 13-PTNLD9-TUMOR_peak_8325 chr10 112119059 112119252 + 13.72179 NA Intergenic Intergenic -54448 NM_005871 10285 Hs.632093 NM_005871 SMNDC1 SMNR|SPF30|TDRD16C survival motor neuron domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_55847 chrX 49126084 49126403 + 13.72179 NA promoter-TSS (NM_033215) promoter-TSS (NM_033215) -63 NM_033215 89801 Hs.433652 NM_033215 HPRD:15170 PPP1R3F HB2E|R3F protein phosphatase 1, regulatory subunit 3F protein-coding 13-PTNLD9-TUMOR_peak_49178 chr7 133859583 133859772 + 13.72179 NA intron (NM_144648, intron 8 of 19) intron (NM_144648, intron 8 of 19) 47572 NM_144648 136332 Hs.149774 NM_144648 HPRD:08734 LRGUK - leucine-rich repeats and guanylate kinase domain containing protein-coding 13-PTNLD9-TUMOR_peak_37359 chr3 194875911 194876125 + 13.70793 NA intron (NM_152531, intron 3 of 3) intron (NM_152531, intron 3 of 3) 7418 NR_102711 101410543 Hs.658170 NR_102710 ENSG00000230266 XXYLT1-AS2 - XXYLT1 antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_21631 chr17 56863814 56863959 + 13.70793 NA intron (NM_014906, intron 1 of 6) MER44C|DNA|TcMar-Tigger 30656 NR_048561 22843 Hs.245044 NM_014906 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent, 1E protein-coding 13-PTNLD9-TUMOR_peak_45475 chr6 72114407 72114634 + 13.70793 NA Intergenic Intergenic -1196 NR_029504 407029 NR_029504 miRBase:MI0000088 MIR30A MIRN30A microRNA 30a ncRNA 13-PTNLD9-TUMOR_peak_17097 chr15 41069008 41069183 + 13.70793 NA intron (NM_018163, intron 4 of 10) intron (NM_018163, intron 4 of 10) 6936 NM_001130448 643338 Hs.631715 NM_001130448 ENSG00000188277 C15orf62 - chromosome 15 open reading frame 62 protein-coding 13-PTNLD9-TUMOR_peak_1227 chr1 39211242 39211437 + 13.70793 NA Intergenic Intergenic 114156 NM_022157 64121 Hs.532461 NM_022157 HPRD:12198 RRAGC GTR2|RAGC|TIB929 Ras-related GTP binding C protein-coding 13-PTNLD9-TUMOR_peak_6522 chr10 13569033 13569240 + 13.70793 NA Intergenic Intergenic -24160 NM_152751 222389 Hs.498740 NM_152751 HPRD:12570 BEND7 C10orf30 BEN domain containing 7 protein-coding 13-PTNLD9-TUMOR_peak_52981 chr9 31137275 31137504 + 13.70793 NA Intergenic Intergenic -728937 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 13-PTNLD9-TUMOR_peak_5401 chr1 218670042 218670268 + 13.70793 NA Intergenic Intergenic 54187 NR_125715 103611157 Hs.133379 NR_125715 TGFB2-OT1 - TGFB2 overlapping transcript 1 ncRNA 13-PTNLD9-TUMOR_peak_44508 chr6 31054705 31054826 + 13.70793 NA Intergenic Intergenic 25567 NM_014070 29113 Hs.272214 NM_014070 HPRD:12856 C6orf15 STG chromosome 6 open reading frame 15 protein-coding 13-PTNLD9-TUMOR_peak_11 chr1 423458 423642 + 13.70584 NA Intergenic AluSq|SINE|Alu 55891 NM_001005277 81399 Hs.632360 NM_001005277 HPRD:14969 OR4F16 OR1-1|OR7-21 olfactory receptor, family 4, subfamily F, member 16 protein-coding 13-PTNLD9-TUMOR_peak_40901 chr5 55419391 55419619 + 13.70440 NA intron (NM_024669, intron 8 of 11) intron (NM_024669, intron 8 of 11) 109681 NM_024669 79722 Hs.436214 NM_024669 HPRD:07758 ANKRD55 - ankyrin repeat domain 55 protein-coding 13-PTNLD9-TUMOR_peak_41260 chr5 73114229 73114519 + 13.70440 NA intron (NM_001244364, intron 1 of 27) intron (NM_001244364, intron 1 of 27) 5031 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor (GEF) 28 protein-coding 13-PTNLD9-TUMOR_peak_3421 chr1 147896358 147896631 + 13.70327 NA intron (NR_111930, intron 4 of 8) intron (NR_111930, intron 4 of 8) 21858 NR_111930 100132057 Hs.585189 NR_033189 LOC100132057 - phosphodiesterase 4D interacting protein pseudogene pseudo 13-PTNLD9-TUMOR_peak_5456 chr1 221613362 221613720 + 13.70327 NA Intergenic Intergenic -103903 NR_024236 400804 Hs.722626 NR_024236 HPRD:17386 C1orf140 - uncharacterized LOC400804 ncRNA 13-PTNLD9-TUMOR_peak_14246 chr12 125389408 125389564 + 13.70327 NA Intergenic Intergenic 10101 NM_021009 7316 Hs.520348 NM_021009 HPRD:07038 UBC HMG20 ubiquitin C protein-coding 13-PTNLD9-TUMOR_peak_7290 chr10 48601591 48601809 + 13.69822 NA Intergenic Intergenic -162562 NM_004962 2662 Hs.2171 NM_004962 HPRD:03218 GDF10 BMP-3b|BMP3B growth differentiation factor 10 protein-coding 13-PTNLD9-TUMOR_peak_12625 chr12 45667584 45668000 + 13.69822 NA intron (NM_001204803, intron 2 of 20) L2a|LINE|L2 -18674 NM_001142678 196527 Hs.505339 NM_001025356 HPRD:18746 ANO6 BDPLT7|SCTS|TMEM16F anoctamin 6 protein-coding 13-PTNLD9-TUMOR_peak_36272 chr3 145646054 145646189 + 13.69822 NA Intergenic L1PA2|LINE|L1 233161 NM_000935 5352 Hs.477866 NM_000935 HPRD:03519 PLOD2 LH2|TLH procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 protein-coding 13-PTNLD9-TUMOR_peak_29159 chr2 175863188 175863416 + 13.69822 NA intron (NR_038133, intron 1 of 11) intron (NR_038133, intron 1 of 11) 6679 NM_001822 1123 Hs.380138 NM_001822 HPRD:00319 CHN1 ARHGAP2|CHN|DURS2|NC|RHOGAP2 chimerin 1 protein-coding 13-PTNLD9-TUMOR_peak_45041 chr6 42694404 42694561 + 13.69822 NA promoter-TSS (NR_037141) promoter-TSS (NR_037141) -832 NR_037141 442211 Hs.563394 NR_037141 ATP6V0CP3 - ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c pseudogene 3 pseudo 13-PTNLD9-TUMOR_peak_10732 chr11 78006293 78006678 + 13.69822 NA intron (NM_080491, intron 1 of 9) intron (NM_080491, intron 1 of 9) 46441 NM_012296 9846 Hs.429434 NM_012296 HPRD:05866 GAB2 - GRB2-associated binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_49708 chr7 152038267 152038402 + 13.69453 NA intron (NM_170606, intron 2 of 58) MLT1H1|LTR|ERVL-MaLR 94756 NM_170606 58508 Hs.647120 NM_021230 HPRD:06016 KMT2C HALR|MLL3 lysine (K)-specific methyltransferase 2C protein-coding 13-PTNLD9-TUMOR_peak_52645 chr9 3526309 3526940 + 13.69453 NA promoter-TSS (NM_001282116) promoter-TSS (NM_001282116) -623 NM_134428 5991 Hs.136829 NM_002919 HPRD:03215 RFX3 - regulatory factor X, 3 (influences HLA class II expression) protein-coding 13-PTNLD9-TUMOR_peak_9570 chr11 36796068 36796509 + 13.69453 NA Intergenic Intergenic -176459 NM_001243786 5897 Hs.714519 NM_000536 HPRD:08913 RAG2 RAG-2 recombination activating gene 2 protein-coding 13-PTNLD9-TUMOR_peak_3104 chr1 120687294 120687453 + 13.69388 NA Intergenic Intergenic -75056 NM_024408 4853 Hs.487360 NM_024408 HPRD:02606 NOTCH2 AGS2|HJCYS|hN2 notch 2 protein-coding 13-PTNLD9-TUMOR_peak_40652 chr5 38468471 38468633 + 13.67657 NA Intergenic MIRc|SINE|MIR 22974 NM_182801 133584 Hs.20103 NM_152403 HPRD:13433 EGFLAM AGRINL|AGRNL|PIKA EGF-like, fibronectin type III and laminin G domains protein-coding 13-PTNLD9-TUMOR_peak_2635 chr1 100435279 100435619 + 13.67657 NA promoter-TSS (NM_001271685) promoter-TSS (NM_001271685) 104 NM_001271684 23443 Hs.448979 NM_012243 HPRD:10413 SLC35A3 AMRS solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3 protein-coding 13-PTNLD9-TUMOR_peak_26277 chr2 20784367 20784577 + 13.67657 NA Intergenic Intergenic 7836 NR_046836 100874343 Hs.591546 NR_046836 ENSG00000231948 HS1BP3-IT1 - HS1BP3 intronic transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_20155 chr16 89894143 89894354 + 13.67657 NA promoter-TSS (NM_032451) promoter-TSS (NM_032451) -659 NM_032451 84501 Hs.461786 NM_032451 HPRD:18099 SPIRE2 Spir-2 spire-type actin nucleation factor 2 protein-coding 13-PTNLD9-TUMOR_peak_44691 chr6 33560945 33561204 + 13.66879 NA promoter-TSS (NR_027908) promoter-TSS (NR_027908) 41 NR_027908 401253 Hs.520075 NM_207497 HPRD:16966 LINC00336 C6orf227|NCRNA00336 long intergenic non-protein coding RNA 336 ncRNA 13-PTNLD9-TUMOR_peak_2860 chr1 112421345 112421579 + 13.66136 NA intron (NM_172198, intron 2 of 6) MLT2B4|LTR|ERVL -21935 NR_046783 100874295 Hs.738190 NR_046783 KCND3-IT1 - KCND3 intronic transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_46109 chr6 136609978 136610183 + 13.66136 NA intron (NM_001301038, intron 1 of 12) intron (NM_001301038, intron 1 of 12) 909 NM_014739 9774 Hs.486542 NM_014739 HPRD:16544 BCLAF1 BTF|bK211L9.1 BCL2-associated transcription factor 1 protein-coding 13-PTNLD9-TUMOR_peak_43367 chr5 180850012 180850154 + 13.65922 NA Intergenic AluSq|SINE|Alu 55795 NM_001005221 729759 Hs.632360 NM_001005221 HPRD:14971 OR4F29 OR7-21 olfactory receptor, family 4, subfamily F, member 29 protein-coding 13-PTNLD9-TUMOR_peak_1665 chr1 47649650 47649876 + 13.65756 NA intron (NM_005764, intron 3 of 3) intron (NM_005764, intron 3 of 3) 4841 NR_047498 100874253 Hs.435758 NR_047498 ENSG00000224805 LINC00853 PDZK1IP1-AS1|ncRNA-a4 long intergenic non-protein coding RNA 853 ncRNA 13-PTNLD9-TUMOR_peak_24397 chr19 18411869 18412169 + 13.65751 NA Intergenic Intergenic 19132 NR_036155 100422833 NR_036155 miRBase:MI0014232 MIR3188 - microRNA 3188 ncRNA 13-PTNLD9-TUMOR_peak_23366 chr18 60153619 60153862 + 13.65550 NA Intergenic Intergenic -36918 NM_017742 54877 Hs.114191 NM_017742 HPRD:11696 ZCCHC2 C18orf49 zinc finger, CCHC domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_34176 chr3 31045686 31046041 + 13.65550 NA Intergenic MLT1G1|LTR|ERVL-MaLR -109710 NM_207359 339896 Hs.657052 NM_207359 HPRD:13557 GADL1 ADC|CSADC|HuADC|HuCSADC glutamate decarboxylase-like 1 protein-coding 13-PTNLD9-TUMOR_peak_11250 chr11 113376706 113377180 + 13.65550 NA Intergenic Intergenic -30942 NM_000795 1813 Hs.73893 NM_000795 HPRD:00539 DRD2 D2DR|D2R dopamine receptor D2 protein-coding 13-PTNLD9-TUMOR_peak_54676 chr9 124408272 124408425 + 13.65550 NA intron (NM_032552, intron 1 of 16) intron (NM_032552, intron 1 of 16) 78967 NM_032552 153090 Hs.522378 NM_032552 HPRD:09903 DAB2IP AF9Q34|AIP-1|AIP1|DIP1/2 DAB2 interacting protein protein-coding 13-PTNLD9-TUMOR_peak_36180 chr3 140770066 140770265 + 13.65550 NA promoter-TSS (NM_080862) promoter-TSS (NM_080862) -578 NM_080862 92369 Hs.655112 NM_080862 HPRD:18108 SPSB4 SSB-4|SSB4 splA/ryanodine receptor domain and SOCS box containing 4 protein-coding 13-PTNLD9-TUMOR_peak_2906 chr1 113541413 113541759 + 13.65550 NA Intergenic Intergenic 42549 NR_103743 100506392 Hs.418285 NR_103743 ENSG00000226419 SLC16A1-AS1 - SLC16A1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_35724 chr3 126108128 126108412 + 13.65550 NA Intergenic CpG 5371 NR_103787 100506907 Hs.369473 NR_103787 ENSG00000249833 CCDC37-AS1 - CCDC37 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_37204 chr3 190037587 190037729 + 13.65550 NA intron (NM_021101, intron 1 of 3) intron (NM_021101, intron 1 of 3) 2577 NM_021101 9076 Hs.439060 NM_021101 HPRD:04760 CLDN1 CLD1|ILVASC|SEMP1 claudin 1 protein-coding 13-PTNLD9-TUMOR_peak_138 chr1 2464914 2465077 + 13.65550 NA Intergenic Intergenic -3311 NM_001010926 388585 Hs.57971 NM_001010926 HPRD:16240 HES5 bHLHb38 hes family bHLH transcription factor 5 protein-coding 13-PTNLD9-TUMOR_peak_19723 chr16 71518182 71518350 + 13.64886 NA intron (NM_006961, intron 2 of 5) intron (NM_006961, intron 2 of 5) 4988 NM_006961 7567 Hs.660076 NM_006961 HPRD:01914 ZNF19 KOX12 zinc finger protein 19 protein-coding 13-PTNLD9-TUMOR_peak_753 chr1 26503822 26504017 + 13.64886 NA promoter-TSS (NM_006314) promoter-TSS (NM_006314) -62 NM_006314 10256 Hs.16232 NM_006314 ENSG00000142675 CNKSR1 CNK|CNK1 connector enhancer of kinase suppressor of Ras 1 protein-coding 13-PTNLD9-TUMOR_peak_50042 chr8 8422009 8422288 + 13.64886 NA Intergenic Intergenic -137518 NM_194284 137075 Hs.183617 NM_194284 HPRD:13069 CLDN23 CLDNL|hCG1646163 claudin 23 protein-coding 13-PTNLD9-TUMOR_peak_35044 chr3 78556605 78556948 + 13.64886 NA Intergenic Intergenic 511833 NM_001145845 6091 Hs.744218 NM_002941 HPRD:03890 ROBO1 DUTT1|SAX3 roundabout, axon guidance receptor, homolog 1 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_23474 chr18 73635163 73635453 + 13.64886 NA Intergenic MER20|DNA|hAT-Charlie -199645 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 13-PTNLD9-TUMOR_peak_8911 chr11 6271173 6271307 + 13.64886 NA Intergenic Intergenic -9664 NM_176875 887 Hs.203 NM_176875 HPRD:00323 CCKBR CCK-B|CCK2R|GASR cholecystokinin B receptor protein-coding 13-PTNLD9-TUMOR_peak_26877 chr2 47998423 47998658 + 13.64886 NA Intergenic MLT1H|LTR|ERVL-MaLR -11681 NM_001281492 2956 Hs.445052 NM_000179 HPRD:07202 MSH6 GTBP|GTMBP|HNPCC5|HSAP|p160 mutS homolog 6 protein-coding 13-PTNLD9-TUMOR_peak_34989 chr3 73529255 73529662 + 13.64886 NA intron (NM_015009, intron 3 of 9) intron (NM_015009, intron 3 of 9) -41015 NR_121660 101927296 Hs.662049 NR_121660 LOC101927296 - uncharacterized LOC101927296 ncRNA 13-PTNLD9-TUMOR_peak_9755 chr11 48102791 48102989 + 13.64886 NA intron (NM_002843, intron 1 of 24) intron (NM_002843, intron 1 of 24) 100780 NM_002843 5795 Hs.318547 NM_002843 HPRD:02955 PTPRJ CD148|DEP1|HPTPeta|R-PTP-ETA|SCC1 protein tyrosine phosphatase, receptor type, J protein-coding 13-PTNLD9-TUMOR_peak_51924 chr8 126625542 126625760 + 13.64886 NA Intergenic Intergenic 181200 NM_001282985 10221 Hs.444947 NM_025195 HPRD:09863 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 13-PTNLD9-TUMOR_peak_45348 chr6 53675999 53676277 + 13.64886 NA intron (NM_018214, intron 1 of 13) intron (NM_018214, intron 1 of 13) 16360 NM_018214 55227 Hs.606493 NM_018214 ENSG00000137269 LRRC1 LANO|dJ523E19.1 leucine rich repeat containing 1 protein-coding 13-PTNLD9-TUMOR_peak_40910 chr5 55643086 55643398 + 13.64459 NA Intergenic LTR29|LTR|ERV1 -114056 NM_024669 79722 Hs.436214 NM_024669 HPRD:07758 ANKRD55 - ankyrin repeat domain 55 protein-coding 13-PTNLD9-TUMOR_peak_811 chr1 27626024 27626234 + 13.64459 NA intron (NM_001276252, intron 12 of 15) L2c|LINE|L2 -22507 NM_032125 84065 Hs.469171 NM_032125 HPRD:13167 TMEM222 C1orf160 transmembrane protein 222 protein-coding 13-PTNLD9-TUMOR_peak_38209 chr4 39541845 39542122 + 13.64459 NA intron (NR_047679, intron 2 of 4) HERVK3-int|LTR|ERVK 12524 NR_047679 100885776 Hs.640769 NR_047679 ENSG00000249348 UGDH-AS1 - UGDH antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_35394 chr3 112512573 112512729 + 13.64459 NA Intergenic MamGypLTR1b|LTR|Gypsy -44485 NR_110017 101929694 Hs.385630 NR_110017 ENSG00000240893 LOC101929694 - uncharacterized LOC101929694 ncRNA 13-PTNLD9-TUMOR_peak_1901 chr1 56797937 56798130 + 13.64459 NA Intergenic Intergenic 247224 NM_003713 8613 Hs.405156 NM_003713 HPRD:06179 PPAP2B Dri42|LPP3|PAP2B|VCIP phosphatidic acid phosphatase type 2B protein-coding 13-PTNLD9-TUMOR_peak_39556 chr4 146729452 146729769 + 13.64459 NA intron (NM_178835, intron 8 of 14) intron (NM_178835, intron 8 of 14) 128254 NM_001080531 646603 Hs.452865 NM_001080531 ENSG00000237136 C4orf51 - chromosome 4 open reading frame 51 protein-coding 13-PTNLD9-TUMOR_peak_22147 chr17 76194990 76195254 + 13.64459 NA intron (NM_001010982, intron 2 of 10) intron (NM_001010982, intron 2 of 10) 11724 NR_027083 125061 Hs.558614 NM_001010982 HPRD:16478 AFMID FKF|KF|KFA arylformamidase protein-coding 13-PTNLD9-TUMOR_peak_20983 chr17 37862045 37862509 + 13.64459 NA intron (NR_110535, intron 1 of 26) intron (NR_110535, intron 1 of 26) 6046 NR_110535 2064 Hs.446352 NM_004448 HPRD:01281 ERBB2 CD340|HER-2|HER-2/neu|HER2|MLN 19|NEU|NGL|TKR1 v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 2 protein-coding 13-PTNLD9-TUMOR_peak_52608 chr9 805229 805439 + 13.64459 NA Intergenic Intergenic -36356 NM_021951 1761 Hs.98586 NM_021951 HPRD:03885 DMRT1 CT154|DMT1 doublesex and mab-3 related transcription factor 1 protein-coding 13-PTNLD9-TUMOR_peak_34973 chr3 72778374 72778526 + 13.64459 NA Intergenic Intergenic 119148 NM_018130 55164 Hs.606584 NM_018130 HPRD:07682 SHQ1 Shq1p SHQ1, H/ACA ribonucleoprotein assembly factor protein-coding 13-PTNLD9-TUMOR_peak_53619 chr9 74920023 74920321 + 13.64459 NA promoter-TSS (NR_110952) promoter-TSS (NR_110952) -180 NR_110953 100507540 Hs.54957 NR_110952 ENSG00000225434 LINC01504 - long intergenic non-protein coding RNA 1504 ncRNA 13-PTNLD9-TUMOR_peak_44847 chr6 37027187 37027388 + 13.64397 NA Intergenic Intergenic 53864 NM_173558 221472 Hs.509664 NM_173558 HPRD:05478 FGD2 ZFYVE4 FYVE, RhoGEF and PH domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_3219 chr1 144044615 144044892 + 13.64397 NA Intergenic Intergenic -102058 NM_001278267 100288142 Hs.445080 NM_001278267 ENSG00000203832 NBPF20 - neuroblastoma breakpoint family, member 20 protein-coding 13-PTNLD9-TUMOR_peak_46869 chr7 7478618 7478777 + 13.64259 NA intron (NM_001037763, intron 21 of 34) intron (NM_001037763, intron 21 of 34) 96763 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen, type XXVIII, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_7507 chr10 64185917 64186102 + 13.64259 NA intron (NM_199450, intron 3 of 4) L2|LINE|L2 -51123 NR_104162 283045 NR_104162 LOC283045 - uncharacterized LOC283045 ncRNA 13-PTNLD9-TUMOR_peak_9479 chr11 33964545 33964709 + 13.64259 NA Intergenic Intergenic -50791 NM_005574 4005 Hs.34560 NM_005574 HPRD:01586 LMO2 RBTN2|RBTNL1|RHOM2|TTG2 LIM domain only 2 (rhombotin-like 1) protein-coding 13-PTNLD9-TUMOR_peak_45250 chr6 47686395 47686661 + 13.64259 NA intron (NM_153838, intron 9 of 9) intron (NM_153838, intron 9 of 9) 20239 NM_153838 221393 Hs.150131 NM_153838 HPRD:17057 GPR115 PGR18 G protein-coupled receptor 115 protein-coding 13-PTNLD9-TUMOR_peak_20649 chr17 19896194 19896351 + 13.64259 NA Intergenic Intergenic -15103 NM_007202 11216 Hs.642676 NM_007202 HPRD:05259 AKAP10 AKAP-10|D-AKAP-2|D-AKAP2|PRKA10 A kinase (PRKA) anchor protein 10 protein-coding 13-PTNLD9-TUMOR_peak_35219 chr3 102698961 102699216 + 13.64259 NA Intergenic LTR25|LTR|ERV1 545229 NM_175056 131368 Hs.352213 NM_175056 HPRD:14048 ZPLD1 - zona pellucida-like domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_39829 chr4 169490321 169490508 + 13.64259 NA intron (NM_016081, intron 2 of 20) intron (NM_016081, intron 2 of 20) -62354 NM_001166109 23022 Hs.151220 NM_016081 HPRD:09731 PALLD CGI151|MYN|PNCA1|SIH002 palladin, cytoskeletal associated protein protein-coding 13-PTNLD9-TUMOR_peak_47814 chr7 70298846 70298968 + 13.64259 NA Intergenic Tigger7|DNA|TcMar-Tigger -298616 NM_022479 64409 Hs.488591 NM_022479 HPRD:15655 WBSCR17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T5L Williams-Beuren syndrome chromosome region 17 protein-coding 13-PTNLD9-TUMOR_peak_50524 chr8 29999272 29999461 + 13.64259 NA intron (NM_001100916, intron 1 of 2) intron (NM_001100916, intron 1 of 2) 2834 NM_001100916 619373 Hs.627194 NM_001100916 ENSG00000177669 MBOAT4 GOAT|OACT4 membrane bound O-acyltransferase domain containing 4 protein-coding 13-PTNLD9-TUMOR_peak_42660 chr5 150169924 150170061 + 13.64259 NA intron (NM_032947, intron 1 of 1) intron (NM_032947, intron 1 of 1) 12484 NM_032947 85027 Hs.29444 NM_032947 HPRD:12212 SMIM3 C5orf62|MST150|NID67 small integral membrane protein 3 protein-coding 13-PTNLD9-TUMOR_peak_33353 chr22 42255303 42255410 + 13.64259 NA intron (NR_103834, intron 1 of 21) Tigger9b|DNA|TcMar-Tigger 26273 NM_004599 6721 Hs.443258 NM_004599 HPRD:02726 SREBF2 SREBP-2|SREBP2|bHLHd2 sterol regulatory element binding transcription factor 2 protein-coding 13-PTNLD9-TUMOR_peak_56354 chrX 111157747 111157899 + 13.64259 NA intron (NM_012471, intron 2 of 10) intron (NM_012471, intron 2 of 10) 32698 NM_001195577 100329135 Hs.247868 NM_001195576 TRPC5OS TRPC5-AS1 TRPC5 opposite strand protein-coding 13-PTNLD9-TUMOR_peak_38033 chr4 15907701 15908145 + 13.64259 NA Intergenic Intergenic 32440 NM_005130 9982 Hs.1690 NM_005130 HPRD:06371 FGFBP1 FGF-BP|FGF-BP1|FGFBP|FGFBP-1|HBP17 fibroblast growth factor binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_9270 chr11 19401955 19402212 + 13.64259 NA intron (NM_001111018, intron 1 of 37) intron (NM_001111018, intron 1 of 37) 29812 NM_001111018 89797 Hs.64341 NM_145117 HPRD:07385 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 13-PTNLD9-TUMOR_peak_20471 chr17 9783980 9784241 + 13.64259 NA intron (NM_004246, intron 11 of 12) intron (NM_004246, intron 11 of 12) 24574 NM_002903 5957 Hs.80539 NM_002903 RCVRN RCV1 recoverin protein-coding 13-PTNLD9-TUMOR_peak_17129 chr15 42302749 42302979 + 13.64259 NA intron (NM_001206670, intron 2 of 19) intron (NM_001206670, intron 2 of 19) 37903 NR_120334 101928388 Hs.738043 NR_120334 ENSG00000246740 LOC101928388 - uncharacterized LOC101928388 ncRNA 13-PTNLD9-TUMOR_peak_46738 chr7 3278905 3279175 + 13.64259 NA Intergenic Intergenic -62040 NM_152744 221935 Hs.653013 NM_152744 HPRD:07388 SDK1 - sidekick cell adhesion molecule 1 protein-coding 13-PTNLD9-TUMOR_peak_15613 chr14 41069054 41069243 + 13.64259 NA Intergenic Intergenic -354768 NR_109758 644919 Hs.434414 NR_109757 LOC644919 - uncharacterized LOC644919 ncRNA 13-PTNLD9-TUMOR_peak_38570 chr4 73633717 73633883 + 13.64259 NA Intergenic Intergenic -199284 NM_014243 9508 Hs.590919 NM_014243 HPRD:06893 ADAMTS3 ADAMTS-4 ADAM metallopeptidase with thrombospondin type 1 motif, 3 protein-coding 13-PTNLD9-TUMOR_peak_35180 chr3 99578725 99578926 + 13.64259 NA intron (NM_182909, intron 4 of 5) intron (NM_182909, intron 4 of 5) 16222 NM_014890 11259 Hs.104672 NM_014890 HPRD:16832 FILIP1L DOC-1|DOC1|GIP130|GIP90 filamin A interacting protein 1-like protein-coding 13-PTNLD9-TUMOR_peak_48327 chr7 93357619 93358034 + 13.64259 NA Intergenic L2c|LINE|L2 11586 NR_039796 100616206 NR_039796 miRBase:MI0017280 MIR4652 - microRNA 4652 ncRNA 13-PTNLD9-TUMOR_peak_46127 chr6 137599200 137599366 + 13.64259 NA Intergenic Intergenic -58716 NM_000416 3459 Hs.520414 NM_000416 HPRD:00127 IFNGR1 CD119|IFNGR interferon gamma receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_11892 chr12 5065358 5065507 + 13.64259 NA Intergenic Intergenic 46359 NM_000217 3736 Hs.416139 NM_000217 HPRD:08885 KCNA1 AEMK|EA1|HBK1|HUK1|KV1.1|MBK1|MK1|RBK1 potassium voltage-gated channel, shaker-related subfamily, member 1 (episodic ataxia with myokymia) protein-coding 13-PTNLD9-TUMOR_peak_47484 chr7 50880671 50880787 + 13.64259 NA Intergenic Intergenic -19570 NM_001001555 2887 Hs.164060 NM_005311 HPRD:03312 GRB10 GRB-IR|Grb-10|IRBP|MEG1|RSS growth factor receptor-bound protein 10 protein-coding 13-PTNLD9-TUMOR_peak_56111 chrX 71089693 71089826 + 13.64259 NA Intergenic Intergenic -41179 NM_001013627 340527 Hs.397836 NM_001013627 HPRD:15001 NHSL2 - NHS-like 2 protein-coding 13-PTNLD9-TUMOR_peak_38282 chr4 48702047 48702160 + 13.64259 NA intron (NM_015030, intron 2 of 63) L2c|LINE|L2 80213 NM_015030 285527 Hs.595553 NM_015030 ENSG00000075539 FRYL KIAA0826 FRY-like protein-coding 13-PTNLD9-TUMOR_peak_46372 chr6 155814807 155815038 + 13.64259 NA Intergenic Intergenic -37885 NM_015718 50508 Hs.247776 NM_015718 HPRD:06165 NOX3 GP91-3|MOX-2 NADPH oxidase 3 protein-coding 13-PTNLD9-TUMOR_peak_5707 chr1 228416553 228416804 + 13.64259 NA intron (NM_001271223, intron 10 of 115) L1MB7|LINE|L1 -15313 NR_073154 574407 Hs.650039 NM_001025495 ENSG00000162913 C1orf145 - chromosome 1 open reading frame 145 ncRNA 13-PTNLD9-TUMOR_peak_47292 chr7 41229572 41229719 + 13.64259 NA Intergenic MER45B|DNA|hAT-Tip100 88443 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 13-PTNLD9-TUMOR_peak_18948 chr16 29626114 29626544 + 13.64259 NA Intergenic Intergenic -1291 NR_002593 81893 Hs.677169 NM_031211 HPRD:13964 SLC7A5P1 DC49|LAT1-3TM|MLAS|hLAT1-3TM solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_26734 chr2 43653683 43653902 + 13.64259 NA intron (NM_022065, intron 28 of 37) intron (NM_022065, intron 28 of 37) 169321 NM_001083953 63892 Hs.369592 NM_022065 HPRD:18177 THADA GITA thyroid adenoma associated protein-coding 13-PTNLD9-TUMOR_peak_39621 chr4 151883528 151883695 + 13.64259 NA intron (NM_006726, intron 2 of 57) AluJb|SINE|Alu 52808 NM_001199282 987 Hs.480938 NM_006726 HPRD:07344 LRBA BGL|CDC4L|CVID8|LAB300|LBA LPS-responsive vesicle trafficking, beach and anchor containing protein-coding 13-PTNLD9-TUMOR_peak_8440 chr10 120557912 120558043 + 13.64259 NA Intergenic MIRb|SINE|MIR -43219 NM_153810 143384 Hs.420024 NM_153810 HPRD:12576 CACUL1 C10orf46|CAC1 CDK2-associated, cullin domain 1 protein-coding 13-PTNLD9-TUMOR_peak_29067 chr2 172272621 172272824 + 13.64259 NA intron (NM_024770, intron 1 of 9) intron (NM_024770, intron 1 of 9) -18039 NM_025000 80067 Hs.659439 NM_025000 HPRD:08579 DCAF17 C2orf37 DDB1 and CUL4 associated factor 17 protein-coding 13-PTNLD9-TUMOR_peak_24962 chr19 40200253 40200377 + 13.64259 NA TTS (NM_203471) TTS (NM_203471) 5369 NM_203471 56891 Hs.24236 NM_020129 HPRD:06268 LGALS14 CLC2|PPL13 lectin, galactoside-binding, soluble, 14 protein-coding 13-PTNLD9-TUMOR_peak_8405 chr10 118369220 118369384 + 13.64259 NA TTS (NM_006229) TTS (NM_006229) -11163 NR_103727 5408 Hs.423598 NM_005396 HPRD:05110 PNLIPRP2 PLRP2 pancreatic lipase-related protein 2 protein-coding 13-PTNLD9-TUMOR_peak_9689 chr11 46270315 46270450 + 13.64259 NA Intergenic Intergenic -28807 NM_052854 90993 Hs.405961 NM_052854 HPRD:16751 CREB3L1 OASIS cAMP responsive element binding protein 3-like 1 protein-coding 13-PTNLD9-TUMOR_peak_33160 chr22 33392828 33393005 + 13.64259 NA intron (NM_001135774, intron 2 of 13) intron (NM_001135774, intron 2 of 13) 9890 NM_133633 8224 Hs.608750 NM_003490 HPRD:04083 SYN3 - synapsin III protein-coding 13-PTNLD9-TUMOR_peak_45828 chr6 106808373 106808620 + 13.64259 NA Intergenic CpG -34801 NM_001286111 9474 Hs.486063 NM_004849 HPRD:16051 ATG5 APG5|APG5-LIKE|APG5L|ASP|hAPG5 autophagy related 5 protein-coding 13-PTNLD9-TUMOR_peak_47328 chr7 43714235 43714402 + 13.64259 NA intron (NR_047701, intron 1 of 7) intron (NR_047701, intron 1 of 7) 54822 NR_047701 55744 Hs.654779 NM_018224 HPRD:07700 COA1 C7orf44|MITRAC15 cytochrome c oxidase assembly factor 1 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_44077 chr6 21281626 21281910 + 13.64259 NA Intergenic Intergenic 230355 NR_103790 100874531 Hs.112750 NR_103790 LINC00581 - long intergenic non-protein coding RNA 581 ncRNA 13-PTNLD9-TUMOR_peak_17447 chr15 65149691 65149948 + 13.64259 NA intron (NM_025201, intron 3 of 5) intron (NM_025201, intron 3 of 5) 15737 NM_025201 80301 Hs.709337 NM_025201 HPRD:15910 PLEKHO2 PLEKHQ1|PP1628|pp9099 pleckstrin homology domain containing, family O member 2 protein-coding 13-PTNLD9-TUMOR_peak_13441 chr12 88172864 88173184 + 13.64259 NA Intergenic L1M1|LINE|L1 5464 NR_033410 400058 Hs.572212 NR_033410 MKRN9P MKRN5|MKRN9|MKRNP6|RNF65|ZNF127L3 makorin ring finger protein 9, pseudogene pseudo 13-PTNLD9-TUMOR_peak_7391 chr10 53639061 53639351 + 13.64259 NA intron (NM_006258, intron 4 of 17) L2c|LINE|L2 -179851 NM_015235 23283 Hs.591358 NM_015235 HPRD:09900 CSTF2T CstF-64T cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant protein-coding 13-PTNLD9-TUMOR_peak_6814 chr10 30130996 30131210 + 13.64259 NA Intergenic Intergenic -106373 NM_003174 6840 Hs.499209 NM_003174 HPRD:04992 SVIL - supervillin protein-coding 13-PTNLD9-TUMOR_peak_15748 chr14 51909632 51909766 + 13.64259 NA Intergenic Intergenic -46140 NM_001042481 122786 Hs.434914 NM_152330 HPRD:12646 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 13-PTNLD9-TUMOR_peak_20731 chr17 25783320 25783491 + 13.64259 NA Intergenic CpG -15631 NM_014238 8844 Hs.133534 NM_014238 KSR1 KSR|RSU2 kinase suppressor of ras 1 protein-coding 13-PTNLD9-TUMOR_peak_44906 chr6 38744423 38744561 + 13.64259 NA intron (NM_001206927, intron 13 of 92) intron (NM_001206927, intron 13 of 92) 61375 NM_001206927 1769 Hs.520106 NM_001371 HPRD:04515 DNAH8 ATPase|hdhc9 dynein, axonemal, heavy chain 8 protein-coding 13-PTNLD9-TUMOR_peak_56583 chrX 148592726 148592933 + 13.64259 NA Intergenic Intergenic -5945 NR_104128 3423 Hs.460960 NM_000202 HPRD:02402 IDS MPS2|SIDS iduronate 2-sulfatase protein-coding 13-PTNLD9-TUMOR_peak_13524 chr12 96196825 96196976 + 13.64259 NA Intergenic Intergenic -12364 NM_021229 59277 Hs.201034 NM_021229 HPRD:10121 NTN4 PRO3091 netrin 4 protein-coding 13-PTNLD9-TUMOR_peak_26452 chr2 28959038 28959230 + 13.64259 NA Intergenic Intergenic -15480 NM_206876 5500 Hs.702907 NM_002709 HPRD:11792 PPP1CB HEL-S-80p|PP-1B|PP1B|PP1beta|PPP1CD protein phosphatase 1, catalytic subunit, beta isozyme protein-coding 13-PTNLD9-TUMOR_peak_8582 chr10 127822882 127823261 + 13.64259 NA intron (NM_001288975, intron 5 of 18) intron (NM_001288975, intron 5 of 18) -161229 NR_102707 101410540 Hs.557889 NR_102707 ENSG00000233409 FANK1-AS1 - FANK1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_51174 chr8 77343602 77343773 + 13.64259 NA intron (NR_105006, intron 1 of 5) intron (NR_105006, intron 1 of 5) 24798 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 13-PTNLD9-TUMOR_peak_21669 chr17 58008240 58008387 + 13.64259 NA intron (NM_003161, intron 6 of 14) intron (NM_003161, intron 6 of 14) 33804 NM_016125 51136 Hs.531701 NM_016125 HPRD:17925 RNFT1 - ring finger protein, transmembrane 1 protein-coding 13-PTNLD9-TUMOR_peak_13515 chr12 95734020 95734261 + 13.64259 NA Intergenic Intergenic 30441 NR_037456 100500802 NR_037456 miRBase:MI0016086 MIR3685 - microRNA 3685 ncRNA 13-PTNLD9-TUMOR_peak_45263 chr6 50055020 50055276 + 13.64259 NA Intergenic Intergenic -38784 NM_001037498 245915 Hs.571092 NM_001037498 HPRD:18757 DEFB112 DEFB-12 defensin, beta 112 protein-coding 13-PTNLD9-TUMOR_peak_41768 chr5 112630597 112630746 + 13.64259 NA promoter-TSS (NM_002387) promoter-TSS (NM_002387) -59 NM_002387 4163 Hs.593171 NM_002387 HPRD:01157 MCC MCC1 mutated in colorectal cancers protein-coding 13-PTNLD9-TUMOR_peak_27887 chr2 103055898 103056033 + 13.64259 NA intron (NM_003853, intron 6 of 11) intron (NM_003853, intron 6 of 11) 7216 NR_039930 100616157 NR_039930 MIR4772 - microRNA 4772 ncRNA 13-PTNLD9-TUMOR_peak_6349 chr10 4891849 4892089 + 13.64259 NA Intergenic Intergenic 23600 NM_001040177 83592 Hs.657944 NM_031436 HPRD:07472 AKR1E2 AKR1CL2|AKRDC1|LoopADR|hTSP|htAKR aldo-keto reductase family 1, member E2 protein-coding 13-PTNLD9-TUMOR_peak_2913 chr1 113939345 113939459 + 13.64259 NA intron (NM_001142782, intron 1 of 20) L2c|LINE|L2 5927 NM_152900 260425 Hs.486189 NM_020965 HPRD:11290 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_8131 chr10 99642303 99642528 + 13.64259 NA intron (NM_018058, intron 13 of 14) intron (NM_018058, intron 13 of 14) 32420 NM_001010917 401647 Hs.567524 NM_001010917 HPRD:16579 GOLGA7B C10orf132|C10orf133|bA451M19.3|bA459F3.4 golgin A7 family, member B protein-coding 13-PTNLD9-TUMOR_peak_51979 chr8 128588827 128588957 + 13.64259 NA Intergenic Intergenic -94508 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLo-1|LINC00860 cancer susceptibility candidate 8 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_52714 chr9 6877979 6878157 + 13.64259 NA intron (NM_001146696, intron 5 of 17) intron (NM_001146696, intron 5 of 17) 120427 NM_015061 23081 Hs.709425 NM_015061 HPRD:12016 KDM4C GASC1|JHDM3C|JMJD2C|TDRD14C|bA146B14.1 lysine (K)-specific demethylase 4C protein-coding 13-PTNLD9-TUMOR_peak_26688 chr2 42569700 42569914 + 13.64259 NA Intergenic Intergenic 18549 NM_004718 9167 Hs.339639 NM_004718 HPRD:05774 COX7A2L COX7AR|COX7RP|EB1|SIG81 cytochrome c oxidase subunit VIIa polypeptide 2 like protein-coding 13-PTNLD9-TUMOR_peak_19540 chr16 66694764 66694961 + 13.64259 NA intron (NM_178818, intron 1 of 4) intron (NM_178818, intron 1 of 4) 35748 NM_181521 146223 Hs.643961 NM_178818 HPRD:07435 CMTM4 CKLFSF4 CKLF-like MARVEL transmembrane domain containing 4 protein-coding 13-PTNLD9-TUMOR_peak_17341 chr15 57889331 57889476 + 13.64259 NA intron (NR_104371, intron 1 of 16) intron (NR_104371, intron 1 of 16) 5301 NM_001018091 145781 Hs.437256 NM_001018090 GCOM1 GRINL1A|Gcom2|MYZAP|MYZAP-POLR2M|gcom GRINL1A complex locus 1 protein-coding 13-PTNLD9-TUMOR_peak_52798 chr9 16180608 16180885 + 13.64259 NA Intergenic Intergenic 72359 NM_001271829 100129385 Hs.586441 NM_001271829 ENSG00000205549 C9orf92 Em:AL513424.1 chromosome 9 open reading frame 92 protein-coding 13-PTNLD9-TUMOR_peak_22885 chr18 29882036 29882214 + 13.64259 NA intron (NM_001242409, intron 3 of 5) MIR3|SINE|MIR 112138 NM_005925 4225 Hs.194777 NM_005925 HPRD:02667 MEP1B - meprin A, beta protein-coding 13-PTNLD9-TUMOR_peak_44091 chr6 22036552 22036751 + 13.64259 NA intron (NR_015410, intron 7 of 11) intron (NR_015410, intron 7 of 11) 110771 NR_034143 729177 Hs.730673 NR_034143 ENSG00000260455 CASC14 - cancer susceptibility candidate 14 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_5722 chr1 228688708 228688860 + 13.64259 NA Intergenic Intergenic 11205 NM_001287262 100129094 Hs.730208 NM_001287262 BTNL10 BTN4|BUTR1 butyrophilin-like 10 protein-coding 13-PTNLD9-TUMOR_peak_32189 chr21 35174085 35174262 + 13.64259 NA intron (NM_003024, intron 19 of 39) intron (NM_003024, intron 19 of 39) 113985 NM_001697 539 Hs.409140 NM_001697 HPRD:02899 ATP5O ATPO|OSCP ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit protein-coding 13-PTNLD9-TUMOR_peak_4107 chr1 160783097 160783278 + 13.64259 NA intron (NM_001261456, intron 2 of 9) L2c|LINE|L2 17323 NM_001033667 4063 Hs.403857 NM_002348 HPRD:02817 LY9 CD229|SLAMF3|hly9|mLY9 lymphocyte antigen 9 protein-coding 13-PTNLD9-TUMOR_peak_28892 chr2 161177654 161177797 + 13.64259 NA intron (NM_016836, intron 2 of 13) intron (NM_016836, intron 2 of 13) -49319 NR_103775 100505984 Hs.729532 NR_103775 ENSG00000115221 LOC100505984 - uncharacterized LOC100505984 ncRNA 13-PTNLD9-TUMOR_peak_27031 chr2 62198425 62198628 + 13.64259 NA intron (NM_152516, intron 1 of 2) LTR10D|LTR|ERV1 65723 NM_152516 150684 Hs.468702 NM_152516 COMMD1 C2orf5|MURR1 copper metabolism (Murr1) domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_53228 chr9 38700832 38700969 + 13.64259 NA Intergenic Intergenic 79815 NR_027294 158228 Hs.632652 NR_027294 FAM201A C9orf122 family with sequence similarity 201, member A ncRNA 13-PTNLD9-TUMOR_peak_8341 chr10 112534029 112534220 + 13.64259 NA intron (NM_001134363, intron 1 of 13) intron (NM_001134363, intron 1 of 13) 96538 NR_026932 282997 Hs.599931 NR_026932 PDCD4-AS1 - PDCD4 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_39957 chr4 184344454 184344743 + 13.64259 NA Intergenic AluSz|SINE|Alu -21191 NM_017632 55602 Hs.644077 NM_017632 HPRD:16683 CDKN2AIP CARF CDKN2A interacting protein protein-coding 13-PTNLD9-TUMOR_peak_19661 chr16 69458371 69458566 + 13.64259 NA promoter-TSS (NM_030579) promoter-TSS (NM_030579) -30 NM_030579 80777 Hs.461131 NM_030579 HPRD:13106 CYB5B CYB5-M|CYPB5M|OMB5 cytochrome b5 type B (outer mitochondrial membrane) protein-coding 13-PTNLD9-TUMOR_peak_5781 chr1 229939593 229939837 + 13.64259 NA Intergenic Intergenic 177734 NM_014777 9816 Hs.533628 NM_014777 HPRD:17178 URB2 KIAA0133|NET10|NPA2 URB2 ribosome biogenesis 2 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_52629 chr9 2260799 2260964 + 13.64259 NA Intergenic Intergenic 102425 NM_001289400 6595 Hs.298990 NM_003070 HPRD:02483 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 13-PTNLD9-TUMOR_peak_42726 chr5 153747723 153747904 + 13.64259 NA intron (NM_198321, intron 4 of 11) L2b|LINE|L2 77569 NR_037897 386627 Hs.652021 NR_037897 SAP30L-AS1 GALNT10-AS1 SAP30L antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_10363 chr11 67340298 67340441 + 13.64259 NA Intergenic LTR13_|LTR|ERVK -10697 NM_000852 2950 Hs.523836 NM_000852 HPRD:00614 GSTP1 DFN7|FAEES3|GST3|GSTP|HEL-S-22|PI glutathione S-transferase pi 1 protein-coding 13-PTNLD9-TUMOR_peak_51018 chr8 60699369 60699532 + 13.64259 NA Intergenic MER34-int|LTR|ERV1 494504 NM_004056 767 Hs.654388 NM_004056 CA8 CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase VIII protein-coding 13-PTNLD9-TUMOR_peak_45819 chr6 105821980 105822207 + 13.64259 NA intron (NM_002726, intron 4 of 14) intron (NM_002726, intron 4 of 14) 28906 NM_002726 5550 Hs.436564 NM_002726 HPRD:02673 PREP PE|PEP prolyl endopeptidase protein-coding 13-PTNLD9-TUMOR_peak_5590 chr1 224701538 224701655 + 13.64259 NA Intergenic Intergenic -79595 NM_001115113 80232 Hs.497873 NM_025160 HPRD:18298 WDR26 CDW2|GID7|MIP2 WD repeat domain 26 protein-coding 13-PTNLD9-TUMOR_peak_52971 chr9 28213052 28213216 + 13.64259 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) 506169 NM_152570 158038 Hs.662661 NM_152570 HPRD:08715 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_1757 chr1 51727047 51727211 + 13.64259 NA intron (NM_014372, intron 1 of 2) intron (NM_014372, intron 1 of 2) 25184 NM_014372 26994 Hs.309641 NM_014372 HPRD:09955 RNF11 SID1669 ring finger protein 11 protein-coding 13-PTNLD9-TUMOR_peak_15718 chr14 50770572 50770730 + 13.64259 NA intron (NM_024884, intron 1 of 9) intron (NM_024884, intron 1 of 9) 8296 NM_024884 79944 Hs.256034 NM_024884 HPRD:12640 L2HGDH C14orf160 L-2-hydroxyglutarate dehydrogenase protein-coding 13-PTNLD9-TUMOR_peak_29114 chr2 174292687 174292916 + 13.64259 NA Intergenic Intergenic 73240 NM_145810 83879 Hs.470654 NM_031942 HPRD:09874 CDCA7 JPO1 cell division cycle associated 7 protein-coding 13-PTNLD9-TUMOR_peak_5667 chr1 227070962 227071072 + 13.64259 NA intron (NM_012486, intron 4 of 12) intron (NM_012486, intron 4 of 12) 12744 NM_000447 5664 Hs.25363 NM_000447 HPRD:02860 PSEN2 AD3L|AD4|CMD1V|PS2|STM2 presenilin 2 protein-coding 13-PTNLD9-TUMOR_peak_32291 chr21 38929745 38929868 + 13.64259 NA Intergenic Intergenic 137204 NM_001396 1859 Hs.368240 NM_001396 HPRD:09018 DYRK1A DYRK|DYRK1|HP86|MNB|MNBH|MRD7 dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A protein-coding 13-PTNLD9-TUMOR_peak_8427 chr10 119412762 119412917 + 13.64259 NA Intergenic Intergenic -108260 NR_002791 196047 Hs.312592 NR_002791 EMX2OS EMX2-AS1|NCRNA00045 EMX2 opposite strand/antisense RNA ncRNA 13-PTNLD9-TUMOR_peak_16299 chr14 76027349 76027534 + 13.64259 NA Intergenic Intergenic -17499 NM_017791 55640 Hs.509966 NM_017791 HPRD:12654 FLVCR2 C14orf58|CCT|EPV|FLVCRL14q|MFSD7C|PVHH feline leukemia virus subgroup C cellular receptor family, member 2 protein-coding 13-PTNLD9-TUMOR_peak_32424 chr21 43758090 43758400 + 13.64259 NA Intergenic Intergenic 12963 NM_005423 7032 Hs.2979 NM_005423 HPRD:01682 TFF2 SML1|SP trefoil factor 2 protein-coding 13-PTNLD9-TUMOR_peak_26173 chr2 13121014 13121189 + 13.64259 NA intron (NR_038434, intron 5 of 5) intron (NR_038434, intron 5 of 5) 26037 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 13-PTNLD9-TUMOR_peak_17928 chr15 88921685 88921851 + 13.64259 NA Intergenic Intergenic 88865 NM_022163 26589 Hs.534261 NM_022163 HPRD:14765 MRPL46 C15orf4|LIECG2|P2ECSL mitochondrial ribosomal protein L46 protein-coding 13-PTNLD9-TUMOR_peak_33152 chr22 32954741 32954894 + 13.64259 NA intron (NM_001135774, intron 7 of 13) AmnSINE1|SINE|Deu 83593 NM_001033024 25793 Hs.5912 NM_012179 HPRD:07292 FBXO7 FBX|FBX07|FBX7|PARK15|PKPS F-box protein 7 protein-coding 13-PTNLD9-TUMOR_peak_44121 chr6 24389473 24389709 + 13.64259 NA Intergenic AluY|SINE|Alu -6071 NM_001195610 51473 Hs.61345 NM_016356 HPRD:09308 DCDC2 DCDC2A|RU2|RU2S doublecortin domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_13435 chr12 87106216 87106356 + 13.64259 NA intron (NM_013244, intron 1 of 6) intron (NM_013244, intron 1 of 6) 126395 NM_013244 25834 Hs.589093 NM_013244 HPRD:09575 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family, member C protein-coding 13-PTNLD9-TUMOR_peak_22645 chr18 12811607 12811816 + 13.64259 NA intron (NM_001207013, intron 8 of 10) intron (NM_001207013, intron 8 of 10) -62290 NR_110763 100996324 Hs.333275 NR_110763 LOC100996324 - uncharacterized LOC100996324 ncRNA 13-PTNLD9-TUMOR_peak_19333 chr16 52112845 52113161 + 13.64259 NA Intergenic L2c|LINE|L2 -5156 NM_001242473 388276 Hs.534669 NM_001242473 ENSG00000261190 C16orf97 - chromosome 16 open reading frame 97 protein-coding 13-PTNLD9-TUMOR_peak_48867 chr7 116813090 116813359 + 13.64259 NA intron (NM_018412, intron 9 of 14) intron (NM_018412, intron 9 of 14) -9511 NR_002332 93655 Hs.368131 NR_002332 ST7-OT3 NCRNA00026|ST7|ST7OT3 ST7 overlapping transcript 3 ncRNA 13-PTNLD9-TUMOR_peak_22981 chr18 39341733 39341884 + 13.64259 NA Intergenic Intergenic -193391 NM_002647 5289 Hs.464971 NM_002647 PIK3C3 VPS34|hVps34 phosphatidylinositol 3-kinase, catalytic subunit type 3 protein-coding 13-PTNLD9-TUMOR_peak_55883 chrX 53009766 53009903 + 13.64259 NA intron (NM_001242492, intron 1 of 4) intron (NM_001242492, intron 1 of 4) 14817 NM_001242490 29057 Hs.6451 NM_014138 HPRD:06683 FAM156A PRO0659|TMEM29 family with sequence similarity 156, member A protein-coding 13-PTNLD9-TUMOR_peak_46517 chr6 166904652 166904804 + 13.64259 NA intron (NM_001006932, intron 9 of 21) intron (NM_001006932, intron 9 of 21) 18193 NR_031734 100302141 NR_031734 MIR1913 MIRN1913|hsa-mir-1913 microRNA 1913 ncRNA 13-PTNLD9-TUMOR_peak_29436 chr2 196530002 196530121 + 13.64259 NA intron (NM_020342, intron 1 of 9) AluJb|SINE|Alu 8209 NM_020342 57181 Hs.650158 NM_020342 HPRD:10572 SLC39A10 LZT-Hs2 solute carrier family 39 (zinc transporter), member 10 protein-coding 13-PTNLD9-TUMOR_peak_33379 chr22 43076656 43076873 + 13.64259 NA Intergenic ERVL-E-int|LTR|ERVL -31359 NM_000398 1727 Hs.561064 NM_000398 HPRD:08942 CYB5R3 B5R|DIA1 cytochrome b5 reductase 3 protein-coding 13-PTNLD9-TUMOR_peak_7968 chr10 90234297 90234605 + 13.64259 NA intron (NM_001031709, intron 4 of 6) MIRb|SINE|MIR 108631 NM_018363 55328 Hs.149849 NM_018363 HPRD:07742 RNLS C10orf59|RENALASE renalase, FAD-dependent amine oxidase protein-coding 13-PTNLD9-TUMOR_peak_14856 chr13 73664655 73664835 + 13.64259 NA Intergenic Intergenic 31815 NM_001730 688 Hs.508234 NM_001730 HPRD:04212 KLF5 BTEB2|CKLF|IKLF Kruppel-like factor 5 (intestinal) protein-coding 13-PTNLD9-TUMOR_peak_40557 chr5 33148448 33148626 + 13.64259 NA Intergenic Intergenic 200988 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LOC340113 - uncharacterized LOC340113 ncRNA 13-PTNLD9-TUMOR_peak_41938 chr5 126346919 126347098 + 13.64259 NA intron (NM_178450, intron 1 of 4) intron (NM_178450, intron 1 of 4) 19492 NM_178450 115123 Hs.132441 NM_178450 HPRD:14362 MARCH3 MARCH-III|RNF173 membrane-associated ring finger (C3HC4) 3, E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_26547 chr2 35523673 35523933 + 13.64259 NA Intergenic Intergenic 1058910 NR_037631 100288911 Hs.432924 NR_037631 LOC100288911 - uncharacterized LOC100288911 ncRNA 13-PTNLD9-TUMOR_peak_14828 chr13 61989207 61989476 + 13.64259 NA 5' UTR (NM_022843, exon 1 of 2) 5' UTR (NM_022843, exon 1 of 2) 314 NM_022843 64881 Hs.391781 NM_022843 ENSG00000197991 PCDH20 PCDH13 protocadherin 20 protein-coding 13-PTNLD9-TUMOR_peak_755 chr1 26527796 26528043 + 13.64259 NA exon (NM_198137, exon 9 of 10) exon (NM_198137, exon 9 of 10) 10800 NM_198137 378807 Hs.123532 NM_198137 HPRD:18607 CATSPER4 - cation channel, sperm associated 4 protein-coding 13-PTNLD9-TUMOR_peak_9395 chr11 29303859 29303991 + 13.64259 NA Intergenic Intergenic 734652 NM_002233 3739 Hs.592002 NM_002233 HPRD:01444 KCNA4 HBK4|HK1|HPCN2|HUKII|KCNA4L|KCNA8|KV1.4|PCN2 potassium voltage-gated channel, shaker-related subfamily, member 4 protein-coding 13-PTNLD9-TUMOR_peak_7615 chr10 71605740 71605898 + 13.64259 NA intron (NM_080798, intron 3 of 34) intron (NM_080798, intron 3 of 34) 44175 NM_080805 1305 Hs.695934 NM_005203 HPRD:00383 COL13A1 COLXIIIA1 collagen, type XIII, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_10961 chr11 94978310 94978520 + 13.64259 NA Intergenic Intergenic -12710 NM_001271594 143686 Hs.120633 NM_144665 HPRD:09682 SESN3 SEST3 sestrin 3 protein-coding 13-PTNLD9-TUMOR_peak_2686 chr1 104607139 104607398 + 13.64259 NA Intergenic Intergenic -8377 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing, apoptosis associated protein 3 pseudogene pseudo 13-PTNLD9-TUMOR_peak_45641 chr6 85824098 85824325 + 13.64259 NA Intergenic Intergenic -335091 NM_001204813 4907 Hs.153952 NM_002526 HPRD:00552 NT5E CALJA|CD73|E5NT|NT|NT5|NTE|eN|eNT 5'-nucleotidase, ecto (CD73) protein-coding 13-PTNLD9-TUMOR_peak_22179 chr17 76677123 76677268 + 13.64259 NA intron (NM_001292019, intron 10 of 12) intron (NM_001292019, intron 10 of 12) 35919 NM_001292019 9267 Hs.191215 NM_004762 HPRD:01630 CYTH1 B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7 cytohesin 1 protein-coding 13-PTNLD9-TUMOR_peak_38968 chr4 102898325 102898467 + 13.64259 NA intron (NM_001127507, intron 6 of 15) MLT1I|LTR|ERVL-MaLR 163413 NM_001083907 55024 Hs.480400 NM_017935 HPRD:09819 BANK1 BANK B-cell scaffold protein with ankyrin repeats 1 protein-coding 13-PTNLD9-TUMOR_peak_35050 chr3 79986857 79986978 + 13.64259 NA Intergenic Intergenic -169858 NM_002941 6091 Hs.744218 NM_002941 HPRD:03890 ROBO1 DUTT1|SAX3 roundabout, axon guidance receptor, homolog 1 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_39458 chr4 141207760 141207951 + 13.64259 NA intron (NR_033939, intron 4 of 4) intron (NR_033939, intron 4 of 4) 29415 NM_032547 60592 Hs.480815 NM_032547 HPRD:18027 SCOC SCOCO short coiled-coil protein protein-coding 13-PTNLD9-TUMOR_peak_942 chr1 31867610 31867844 + 13.64259 NA Intergenic MIR3|SINE|MIR -14685 NM_001199038 347735 Hs.270655 NM_018565 HPRD:15481 SERINC2 PRO0899|TDE2|TDE2L serine incorporator 2 protein-coding 13-PTNLD9-TUMOR_peak_21884 chr17 68133590 68133754 + 13.64259 NA Intergenic Intergenic 31871 NR_036534 400617 Hs.225661 NR_036534 ENSG00000267365 KCNJ2-AS1 - KCNJ2 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_37849 chr4 7913004 7913254 + 13.64259 NA intron (NM_198595, intron 1 of 16) intron (NM_198595, intron 1 of 16) 28524 NM_198595 60312 Hs.529369 NM_021638 HPRD:09747 AFAP1 AFAP|AFAP-110|AFAP110 actin filament associated protein 1 protein-coding 13-PTNLD9-TUMOR_peak_50533 chr8 30280850 30280990 + 13.64259 NA intron (NM_001008712, intron 1 of 6) intron (NM_001008712, intron 1 of 6) -38003 NR_046205 100128750 Hs.126813 NR_046205 ENSG00000254109 RBPMS-AS1 - RBPMS antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_26765 chr2 45252124 45252308 + 13.64259 NA Intergenic Intergenic -15674 NM_016932 10736 Hs.101937 NM_016932 HPRD:05408 SIX2 - SIX homeobox 2 protein-coding 13-PTNLD9-TUMOR_peak_33022 chr22 27379376 27379582 + 13.64259 NA Intergenic LTR16A1|LTR|ERVL 80224 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000223704 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 13-PTNLD9-TUMOR_peak_17037 chr15 37351346 37351561 + 13.64259 NA intron (NM_001220482, intron 8 of 12) intron (NM_001220482, intron 8 of 12) 39109 NM_172315 4212 Hs.510989 NM_002399 HPRD:03443 MEIS2 HsT18361|MRG1 Meis homeobox 2 protein-coding 13-PTNLD9-TUMOR_peak_36841 chr3 178070483 178070667 + 13.64259 NA Intergenic Intergenic -66414 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 13-PTNLD9-TUMOR_peak_21337 chr17 46080050 46080202 + 13.64259 NA Intergenic Plat_L3|LINE|CR1 31804 NM_001278217 80279 Hs.20157 NM_025197 HPRD:12190 CDK5RAP3 C53|HSF-27|IC53|LZAP|MST016|OK/SW-cl.114|PP1553 CDK5 regulatory subunit associated protein 3 protein-coding 13-PTNLD9-TUMOR_peak_51045 chr8 64132935 64133114 + 13.64259 NA Intergenic Intergenic 51462 NM_001277818 253943 Hs.491861 NM_152758 HPRD:08106 YTHDF3 - YTH domain family, member 3 protein-coding 13-PTNLD9-TUMOR_peak_7777 chr10 76559649 76559823 + 13.64259 NA Intergenic L1MB3|LINE|L1 -26435 NM_001256469 23522 Hs.35758 NM_012330 HPRD:07065 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf K(lysine) acetyltransferase 6B protein-coding 13-PTNLD9-TUMOR_peak_50492 chr8 29230831 29230994 + 13.64259 NA Intergenic Intergenic -22645 NM_001394 1846 Hs.417962 NM_001394 HPRD:04123 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 13-PTNLD9-TUMOR_peak_51515 chr8 104448025 104448198 + 13.64259 NA intron (NM_015420, intron 8 of 10) Tigger3a|DNA|TcMar-Tigger -20548 NM_030780 81034 Hs.532265 NM_030780 HPRD:11301 SLC25A32 MFT|MFTC solute carrier family 25 (mitochondrial folate carrier), member 32 protein-coding 13-PTNLD9-TUMOR_peak_36899 chr3 181457510 181457641 + 13.64259 NA non-coding (NR_004053, exon 5 of 5) non-coding (NR_004053, exon 5 of 5) 27863 NM_003106 6657 Hs.518438 NM_003106 HPRD:08921 SOX2 ANOP3|MCOPS3 SRY (sex determining region Y)-box 2 protein-coding 13-PTNLD9-TUMOR_peak_27222 chr2 70768977 70769101 + 13.64259 NA intron (NM_001099691, intron 1 of 5) intron (NM_001099691, intron 1 of 5) 12108 NM_003236 7039 Hs.170009 NM_003236 HPRD:07522 TGFA TFGA transforming growth factor, alpha protein-coding 13-PTNLD9-TUMOR_peak_45918 chr6 112306436 112306627 + 13.64259 NA Intergenic Intergenic -68747 NM_003880 8838 Hs.558428 NM_003880 HPRD:04550 WISP3 CCN6|LIBC|PPAC|PPD WNT1 inducible signaling pathway protein 3 protein-coding 13-PTNLD9-TUMOR_peak_40650 chr5 38441957 38442105 + 13.64259 NA intron (NM_182798, intron 12 of 16) intron (NM_182798, intron 12 of 16) -3547 NM_182801 133584 Hs.20103 NM_152403 HPRD:13433 EGFLAM AGRINL|AGRNL|PIKA EGF-like, fibronectin type III and laminin G domains protein-coding 13-PTNLD9-TUMOR_peak_7843 chr10 80685664 80685839 + 13.64259 NA Intergenic MIR3|SINE|MIR 141454 NR_024429 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_46008 chr6 125424148 125424361 + 13.64259 NA Intergenic Intergenic -50621 NM_001300994 7164 Hs.591347 NM_003287 HPRD:07236 TPD52L1 D53|hD53 tumor protein D52-like 1 protein-coding 13-PTNLD9-TUMOR_peak_1021 chr1 33472928 33473084 + 13.64259 NA TTS (NM_013411) TTS (NM_013411) 29506 NM_001199199 204 Hs.470907 NM_001625 HPRD:00047 AK2 ADK2|AK 2 adenylate kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_32232 chr21 36628787 36629183 + 13.64259 NA Intergenic Intergenic -207390 NM_001754 861 Hs.149261 NM_001754 HPRD:01043 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBFA2|EVI-1|PEBP2aB runt-related transcription factor 1 protein-coding 13-PTNLD9-TUMOR_peak_34822 chr3 63435826 63436078 + 13.64259 NA intron (NR_046677, intron 1 of 4) MIRb|SINE|MIR 7199 NM_144642 132204 Hs.648668 NM_144642 HPRD:15458 SYNPR SPO synaptoporin protein-coding 13-PTNLD9-TUMOR_peak_46066 chr6 132405986 132406258 + 13.64259 NA Intergenic Intergenic -48996 NR_038981 100507254 Hs.103070 NR_038981 LINC01013 - long intergenic non-protein coding RNA 1013 ncRNA 13-PTNLD9-TUMOR_peak_41472 chr5 87077088 87077204 + 13.64259 NA Intergenic Intergenic -368296 NM_001239 902 Hs.292524 NM_001239 HPRD:09059 CCNH CAK|CycH|p34|p37 cyclin H protein-coding 13-PTNLD9-TUMOR_peak_43826 chr6 12709439 12709604 + 13.64259 NA Intergenic Intergenic -7516 NM_001242648 221692 Hs.436996 NM_030948 PHACTR1 RPEL|RPEL1|dJ257A7.2 phosphatase and actin regulator 1 protein-coding 13-PTNLD9-TUMOR_peak_36348 chr3 149266080 149266221 + 13.64259 NA intron (NM_015472, intron 3 of 6) intron (NM_015472, intron 3 of 6) 73782 NM_004617 7104 Hs.133527 NM_004617 TM4SF4 ILTMP|il-TMP transmembrane 4 L six family member 4 protein-coding 13-PTNLD9-TUMOR_peak_7446 chr10 60515557 60515746 + 13.64259 NA intron (NM_001080512, intron 3 of 20) intron (NM_001080512, intron 3 of 20) 40876 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 13-PTNLD9-TUMOR_peak_31296 chr20 46420744 46421064 + 13.63489 NA Intergenic Intergenic -5544 NM_198596 55959 Hs.162016 NM_018837 HPRD:18130 SULF2 HSULF-2 sulfatase 2 protein-coding 13-PTNLD9-TUMOR_peak_49281 chr7 137544168 137544389 + 13.63489 NA Intergenic Intergenic -12669 NM_004717 9162 Hs.242947 NM_004717 HPRD:07238 DGKI DGK-IOTA diacylglycerol kinase, iota protein-coding 13-PTNLD9-TUMOR_peak_50015 chr8 7727005 7727453 + 13.62727 NA Intergenic Intergenic -11497 NM_001081551 414325 Hs.283082 NM_001081551 ENSG00000176797 DEFB103A BD-3|DEFB-3|DEFB103|DEFB3|HBD3|HBP-3|HBP3|hBD-3 defensin, beta 103A protein-coding 13-PTNLD9-TUMOR_peak_5455 chr1 221612832 221613017 + 13.62342 NA Intergenic Intergenic -103286 NR_024236 400804 Hs.722626 NR_024236 HPRD:17386 C1orf140 - uncharacterized LOC400804 ncRNA 13-PTNLD9-TUMOR_peak_17491 chr15 67397757 67397928 + 13.62342 NA intron (NM_005902, intron 1 of 8) intron (NM_005902, intron 1 of 8) -20212 NM_001145102 4088 Hs.727986 NM_005902 HPRD:04380 SMAD3 HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3 SMAD family member 3 protein-coding 13-PTNLD9-TUMOR_peak_46945 chr7 17409740 17409906 + 13.62342 NA Intergenic Intergenic -4718 NR_110014 102659288 Hs.559488 NR_110014 LOC102659288 - uncharacterized LOC102659288 ncRNA 13-PTNLD9-TUMOR_peak_33051 chr22 29195331 29195607 + 13.62342 NA intron (NM_001079539, intron 1 of 5) intron (NM_001079539, intron 1 of 5) 1091 NM_001079539 7494 Hs.437638 NM_005080 HPRD:01908 XBP1 TREB5|XBP-1|XBP2 X-box binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_48361 chr7 95179155 95179304 + 13.62342 NA Intergenic Intergenic 46696 NM_002612 5166 Hs.8364 NM_002612 HPRD:03957 PDK4 - pyruvate dehydrogenase kinase, isozyme 4 protein-coding 13-PTNLD9-TUMOR_peak_43937 chr6 16239955 16240107 + 13.62342 NA intron (NM_006877, intron 1 of 8) intron (NM_006877, intron 1 of 8) 1220 NM_006877 2766 Hs.484741 NM_006877 HPRD:00754 GMPR GMPR1 guanosine monophosphate reductase protein-coding 13-PTNLD9-TUMOR_peak_3201 chr1 143708849 143709122 + 13.62342 NA intron (NR_111930, intron 4 of 8).2 intron (NR_111930, intron 4 of 8).2 21858 NR_111930 100132057 Hs.585189 NR_033189 LOC100132057 - phosphodiesterase 4D interacting protein pseudogene pseudo 13-PTNLD9-TUMOR_peak_16071 chr14 67999789 67999926 + 13.62342 NA promoter-TSS (NM_020715) promoter-TSS (NM_020715) -151 NM_020715 57475 Hs.594236 NM_020715 HPRD:17862 PLEKHH1 - pleckstrin homology domain containing, family H (with MyTH4 domain) member 1 protein-coding 13-PTNLD9-TUMOR_peak_46855 chr7 6993479 6993716 + 13.62067 NA Intergenic HERVE-int|LTR|ERV1 -127671 NM_198097 221960 Hs.567779 NM_198097 HPRD:12916 CCZ1B C7orf28B|H_NH0577018.2 CCZ1 vacuolar protein trafficking and biogenesis associated homolog B (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_15857 chr14 56273713 56274156 + 13.62067 NA Intergenic Intergenic -10542 NR_026797 645687 Hs.569345 NR_026796 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 13-PTNLD9-TUMOR_peak_4156 chr1 161510504 161510678 + 13.62067 NA TTS (NM_000569) TTS (NM_000569) 9227 NM_001127592 2214 Hs.372679 NM_000569 HPRD:00903 FCGR3A CD16|CD16A|FCG3|FCGR3|FCGRIII|FCR-10|FCRIII|FCRIIIA|IGFR3|IMD20 Fc fragment of IgG, low affinity IIIa, receptor (CD16a) protein-coding 13-PTNLD9-TUMOR_peak_45006 chr6 42012074 42012187 + 13.62067 NA intron (NM_001287434, intron 1 of 4) intron (NM_001287434, intron 1 of 4) 4502 NM_001136126 896 Hs.534307 NM_001760 HPRD:00452 CCND3 - cyclin D3 protein-coding 13-PTNLD9-TUMOR_peak_46857 chr7 7030758 7031041 + 13.62067 NA Intergenic HERVS71-int|LTR|ERV1 105518 NR_034022 100131257 Hs.551110 NR_034022 LOC100131257 - zinc finger protein 655 pseudogene pseudo 13-PTNLD9-TUMOR_peak_48038 chr7 75936456 75936648 + 13.61624 NA Intergenic Intergenic 4677 NM_001540 3315 Hs.520973 NM_001540 HPRD:09076 HSPB1 CMT2F|HEL-S-102|HMN2B|HS.76067|HSP27|HSP28|Hsp25|SRP27 heat shock 27kDa protein 1 protein-coding 13-PTNLD9-TUMOR_peak_29334 chr2 190399654 190399907 + 13.61397 NA Intergenic Intergenic 45757 NM_014585 30061 Hs.643005 NM_014585 HPRD:05229 SLC40A1 FPN1|HFE4|IREG1|MST079|MTP1|SLC11A3 solute carrier family 40 (iron-regulated transporter), member 1 protein-coding 13-PTNLD9-TUMOR_peak_29090 chr2 173113672 173113882 + 13.61397 NA Intergenic Intergenic -146299 NM_004405 1746 Hs.419 NM_004405 HPRD:00527 DLX2 TES-1|TES1 distal-less homeobox 2 protein-coding 13-PTNLD9-TUMOR_peak_50220 chr8 20164294 20164480 + 13.61397 NA Intergenic Intergenic 31103 NR_047509 100874051 Hs.385799 NR_047509 ENSG00000253733 LZTS1-AS1 - LZTS1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_39832 chr4 169525815 169525996 + 13.61397 NA intron (NM_016081, intron 2 of 20) intron (NM_016081, intron 2 of 20) -26863 NM_001166109 23022 Hs.151220 NM_016081 HPRD:09731 PALLD CGI151|MYN|PNCA1|SIH002 palladin, cytoskeletal associated protein protein-coding 13-PTNLD9-TUMOR_peak_15792 chr14 53925139 53925395 + 13.61397 NA Intergenic Intergenic 305195 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 13-PTNLD9-TUMOR_peak_30085 chr2 236172322 236172634 + 13.61397 NA Intergenic Intergenic -230255 NM_001037131 116987 Hs.435039 NM_014914 HPRD:16359 AGAP1 AGAP-1|CENTG2|GGAP1|cnt-g2 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 protein-coding 13-PTNLD9-TUMOR_peak_24547 chr19 24236914 24237223 + 13.61008 NA intron (NM_001278677, intron 3 of 5) BSR/Beta|Satellite|Satellite 20861 NM_001278677 9534 Hs.434406 NM_004876 HPRD:05304 ZNF254 BMZF-5|HD-ZNF1|ZNF539|ZNF91L zinc finger protein 254 protein-coding 13-PTNLD9-TUMOR_peak_11963 chr12 6432542 6432927 + 13.61008 NA intron (NM_001144857, intron 12 of 14) intron (NM_001144857, intron 12 of 14) 10917 NM_001144857 55200 Hs.631660 NM_018173 HPRD:07692 PLEKHG6 MyoGEF pleckstrin homology domain containing, family G (with RhoGef domain) member 6 protein-coding 13-PTNLD9-TUMOR_peak_48965 chr7 127899882 127900043 + 13.61008 NA Intergenic LTR8|LTR|ERV1 18631 NM_000230 3952 Hs.194236 NM_000230 HPRD:01249 LEP LEPD|OB|OBS leptin protein-coding 13-PTNLD9-TUMOR_peak_1261 chr1 40004963 40005116 + 13.61008 NA intron (NR_003929, intron 7 of 8) MER20B|DNA|hAT-Charlie 20331 NR_003929 728448 Hs.472508 NR_003929 PPIEL PPIEP1 peptidylprolyl isomerase E-like pseudogene pseudo 13-PTNLD9-TUMOR_peak_25954 chr2 1821223 1821527 + 13.61008 NA intron (NM_015025, intron 21 of 24) intron (NM_015025, intron 21 of 24) -73056 NM_012293 7837 Hs.332197 NM_012293 ENSG00000130508 PXDN COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO peroxidasin homolog (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_48930 chr7 127077954 127078156 + 13.61008 NA Intergenic Intergenic -38882 NR_110024 100506682 Hs.148450 NR_110024 ENSG00000226770 LOC100506682 - uncharacterized LOC100506682 ncRNA 13-PTNLD9-TUMOR_peak_49059 chr7 129882133 129882329 + 13.61008 NA Intergenic L2c|LINE|L2 -24472 NM_001869 1358 Hs.490038 NM_001869 HPRD:02821 CPA2 - carboxypeptidase A2 (pancreatic) protein-coding 13-PTNLD9-TUMOR_peak_3075 chr1 120190736 120191217 + 13.61008 NA promoter-TSS (NM_001080470) promoter-TSS (NM_001080470) -586 NM_001080470 90874 Hs.381105 NM_001080470 ENSG00000143067 ZNF697 - zinc finger protein 697 protein-coding 13-PTNLD9-TUMOR_peak_34397 chr3 45052605 45052778 + 13.61008 NA intron (NR_023353, intron 5 of 6) intron (NR_023353, intron 5 of 6) -15068 NM_003278 7123 Hs.476092 NM_003278 HPRD:01759 CLEC3B TN|TNA C-type lectin domain family 3, member B protein-coding 13-PTNLD9-TUMOR_peak_25756 chr19 57702761 57703274 + 13.61008 NA 5' UTR (NM_003417, exon 1 of 4) 5' UTR (NM_003417, exon 1 of 4) 149 NM_003417 9422 Hs.515634 NM_003417 ZNF264 - zinc finger protein 264 protein-coding 13-PTNLD9-TUMOR_peak_16878 chr15 29269653 29269860 + 13.61008 NA intron (NM_001130414, intron 1 of 12) intron (NM_001130414, intron 1 of 12) 55916 NM_001130414 321 Hs.618112 NM_005503 HPRD:04090 APBA2 D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L amyloid beta (A4) precursor protein-binding, family A, member 2 protein-coding 13-PTNLD9-TUMOR_peak_23565 chr19 80218 80463 + 13.60836 NA Intergenic MLT1F2-int|LTR|ERVL-MaLR -2650 NR_026818 645520 Hs.569137 NR_026818 ENSG00000237613 FAM138A F379|FAM138F family with sequence similarity 138, member A ncRNA 13-PTNLD9-TUMOR_peak_46243 chr6 148656898 148657080 + 13.60188 NA Intergenic Intergenic -6740 NM_015278 23328 Hs.193133 NM_015278 HPRD:06408 SASH1 SH3D6A|dJ323M4|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_21231 chr17 43565184 43565468 + 13.60188 NA intron (NR_027782, intron 1 of 10).2 intron (NR_027782, intron 1 of 10).2 2820 NR_027774 9842 Hs.514242 NM_014798 HPRD:11439 PLEKHM1 AP162|B2|OPTB6 pleckstrin homology domain containing, family M (with RUN domain) member 1 protein-coding 13-PTNLD9-TUMOR_peak_48993 chr7 128473755 128473973 + 13.59603 NA intron (NM_001127487, intron 1 of 46) intron (NM_001127487, intron 1 of 46) 3381 NM_001127487 2318 Hs.58414 NM_001458 HPRD:00018 FLNC ABP-280|ABP280A|ABPA|ABPL|FLN2|MFM5|MPD4 filamin C, gamma protein-coding 13-PTNLD9-TUMOR_peak_44859 chr6 37157540 37157823 + 13.59380 NA Intergenic AluJo|SINE|Alu 19759 NM_001243186 5292 Hs.81170 NM_002648 HPRD:01292 PIM1 PIM Pim-1 proto-oncogene, serine/threonine kinase protein-coding 13-PTNLD9-TUMOR_peak_56791 chrY 2575417 2575668 + 13.59380 NA intron (NM_001277710, intron 1 of 10) intron (NM_001277710, intron 1 of 10) 16314 NM_001122898 4267 Hs.653349 NM_002414 HPRD:02434 CD99 HBA71|MIC2|MIC2X|MIC2Y|MSK5X CD99 molecule protein-coding 13-PTNLD9-TUMOR_peak_9606 chr11 42494730 42494943 + 13.59380 NA Intergenic Intergenic -219596 NR_038309 100507205 Hs.99310 NR_038309 LOC100507205 - uncharacterized LOC100507205 ncRNA 13-PTNLD9-TUMOR_peak_3895 chr1 155931809 155931979 + 13.59380 NA intron (NM_004723, intron 10 of 21) intron (NM_004723, intron 10 of 21) -10767 NR_106796 102465442 NR_106796 MIR6738 hsa-mir-6738 microRNA 6738 ncRNA 13-PTNLD9-TUMOR_peak_35058 chr3 82387088 82387260 + 13.59380 NA Intergenic L1HS|LINE|L1 -576224 NM_000158 2632 Hs.436062 NM_000158 HPRD:01985 GBE1 APBD|GBE|GSD4 glucan (1,4-alpha-), branching enzyme 1 protein-coding 13-PTNLD9-TUMOR_peak_45623 chr6 83909607 83909827 + 13.59380 NA Intergenic ERVL-E-int|LTR|ERVL -6062 NM_001199917 5238 Hs.661665 NM_015599 HPRD:01390 PGM3 AGM1|IMD23|PAGM|PGM 3 phosphoglucomutase 3 protein-coding 13-PTNLD9-TUMOR_peak_14543 chr13 31392468 31392799 + 13.59380 NA Intergenic L2a|LINE|L2 15290 NR_047012 100874158 Hs.577982 NR_047012 ENSG00000237879 LINC00398 - long intergenic non-protein coding RNA 398 ncRNA 13-PTNLD9-TUMOR_peak_55485 chrX 2625417 2625668 + 13.59380 NA intron (NM_001277710, intron 1 of 10).2 intron (NM_001277710, intron 1 of 10).2 16314 NM_001122898 4267 Hs.653349 NM_002414 HPRD:02434 CD99 HBA71|MIC2|MIC2X|MIC2Y|MSK5X CD99 molecule protein-coding 13-PTNLD9-TUMOR_peak_53841 chr9 88019963 88020334 + 13.59380 NA Intergenic Tigger3b|DNA|TcMar-Tigger 336796 NM_001286715 23287 Hs.719980 NM_015239 HPRD:08442 AGTPBP1 CCP1|NNA1 ATP/GTP binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_2344 chr1 86077603 86077896 + 13.59335 NA Intergenic Intergenic 31305 NM_001554 3491 Hs.8867 NM_001554 HPRD:09089 CYR61 CCN1|GIG1|IGFBP10 cysteine-rich, angiogenic inducer, 61 protein-coding 13-PTNLD9-TUMOR_peak_28235 chr2 120051438 120051813 + 13.59284 NA Intergenic L2a|LINE|L2 70241 NM_018234 55240 Hs.647822 NM_018234 HPRD:10285 STEAP3 AHMIO2|STMP3|TSAP6|dudlin-2 STEAP family member 3, metalloreductase protein-coding 13-PTNLD9-TUMOR_peak_10949 chr11 94671690 94671849 + 13.59284 NA Intergenic Intergenic 35007 NM_016403 51503 Hs.503597 NM_016403 HPRD:13703 CWC15 AD002|C11orf5|Cwf15|HSPC148|ORF5 CWC15 spliceosome-associated protein protein-coding 13-PTNLD9-TUMOR_peak_55821 chrX 48554744 48555134 + 13.59284 NA promoter-TSS (NM_003173) promoter-TSS (NM_003173) -185 NM_003173 6839 Hs.522639 NM_003173 HPRD:02221 SUV39H1 H3-K9-HMTase 1|KMT1A|MG44|SUV39H suppressor of variegation 3-9 homolog 1 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_6670 chr10 23354513 23354718 + 13.59284 NA Intergenic LTR81|LTR|Gypsy -29812 NM_012228 22921 Hs.461420 NM_012228 HPRD:17606 MSRB2 CBS-1|CBS1|MSRB|PILB methionine sulfoxide reductase B2 protein-coding 13-PTNLD9-TUMOR_peak_28933 chr2 163335213 163335414 + 13.59284 NA intron (NM_033272, intron 6 of 15) intron (NM_033272, intron 6 of 15) 134730 NM_012198 25801 Hs.377894 NM_012198 GCA GCL grancalcin, EF-hand calcium binding protein protein-coding 13-PTNLD9-TUMOR_peak_33209 chr22 37055783 37056223 + 13.59284 NA intron (NM_006078, intron 1 of 3) intron (NM_006078, intron 1 of 3) 42687 NM_006078 10369 Hs.146766 NM_006078 CACNG2 MRD10 calcium channel, voltage-dependent, gamma subunit 2 protein-coding 13-PTNLD9-TUMOR_peak_13630 chr12 104400786 104400947 + 13.59284 NA intron (NM_031302, intron 4 of 10) intron (NM_031302, intron 4 of 10) 41273 NM_003211 6996 Hs.584809 NM_003211 HPRD:03251 TDG hTDG thymine-DNA glycosylase protein-coding 13-PTNLD9-TUMOR_peak_32421 chr21 43654710 43654959 + 13.59284 NA intron (NM_207628, intron 4 of 16) intron (NM_207628, intron 4 of 16) 14826 NM_207174 9619 Hs.124649 NM_004915 HPRD:04355 ABCG1 ABC8|WHITE1 ATP-binding cassette, sub-family G (WHITE), member 1 protein-coding 13-PTNLD9-TUMOR_peak_44369 chr6 28557051 28557444 + 13.59054 NA Intergenic Intergenic -2135 NM_052923 114821 Hs.176980 NM_052923 HPRD:11720 ZBED9 Buster4|SCAND3|ZFP38-L|ZNF305P2|ZNF452|dJ1186N24.3 zinc finger, BED-type containing 9 protein-coding 13-PTNLD9-TUMOR_peak_37919 chr4 8957970 8958303 + 13.59054 NA Intergenic LTR5A|LTR|ERVK 6659 NM_001040071 650293 Hs.535167 NM_001040071 LOC650293 - seven transmembrane helix receptor protein-coding 13-PTNLD9-TUMOR_peak_3411 chr1 147753014 147753843 + 13.58811 NA intron (NR_102404, intron 17 of 18).2 intron (NR_102404, intron 17 of 18).2 -34086 NR_120331 101927468 Hs.515867 NR_120331 LOC101927468 - uncharacterized LOC101927468 ncRNA 13-PTNLD9-TUMOR_peak_42551 chr5 148293673 148294002 + 13.58811 NA Intergenic Intergenic 87681 NM_000024 154 Hs.2551 NM_000024 HPRD:00187 ADRB2 ADRB2R|ADRBR|B2AR|BAR|BETA2AR adrenoceptor beta 2, surface protein-coding 13-PTNLD9-TUMOR_peak_3892 chr1 155902001 155902195 + 13.58811 NA intron (NM_014949, intron 2 of 13) AluJr|SINE|Alu 2090 NM_014949 22889 Hs.24656 NM_014949 HPRD:17198 KIAA0907 BLOM7 KIAA0907 protein-coding 13-PTNLD9-TUMOR_peak_48677 chr7 102803169 102803319 + 13.58737 NA Intergenic Intergenic -13675 NM_001122838 222236 Hs.324271 NM_198990 HPRD:14809 NAPEPLD FMP30|NAPE-PLD N-acyl phosphatidylethanolamine phospholipase D protein-coding 13-PTNLD9-TUMOR_peak_35012 chr3 75467003 75467460 + 13.58737 NA Intergenic Intergenic 17035 NR_024241 692099 Hs.591652 NR_024241 ENSG00000244026 FAM86DP FAM86D family with sequence similarity 86, member D, pseudogene pseudo 13-PTNLD9-TUMOR_peak_6893 chr10 33272318 33272441 + 13.58737 NA Intergenic MLT1L|LTR|ERVL-MaLR -25086 NM_002211 3688 Hs.643813 NM_002211 HPRD:00628 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) protein-coding 13-PTNLD9-TUMOR_peak_22560 chr18 9825641 9825817 + 13.58281 NA intron (NM_006868, intron 5 of 6) intron (NM_006868, intron 5 of 6) -59994 NM_032243 84203 Hs.98712 NM_032243 HPRD:11654 TXNDC2 SPTRX|SPTRX1 thioredoxin domain containing 2 (spermatozoa) protein-coding 13-PTNLD9-TUMOR_peak_42788 chr5 157158335 157158508 + 13.58281 NA promoter-TSS (NM_017872) promoter-TSS (NM_017872) 98 NM_017872 54974 Hs.353090 NM_017872 THG1L ICF45|IHG-1 tRNA-histidine guanylyltransferase 1-like (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_20103 chr16 88949555 88949724 + 13.58281 NA intron (NM_175931, intron 6 of 10) MER57C1|LTR|ERV1 -16571 NM_001080487 390748 Hs.730522 NM_001080487 ENSG00000205022 PABPN1L PABPNL1|ePABP2 poly(A) binding protein, nuclear 1-like (cytoplasmic) protein-coding 13-PTNLD9-TUMOR_peak_27015 chr2 61763819 61764001 + 13.58053 NA intron (NM_003400, intron 1 of 24) intron (NM_003400, intron 1 of 24) 1508 NM_003400 7514 Hs.370770 NM_003400 HPRD:03975 XPO1 CRM1|emb|exp1 exportin 1 protein-coding 13-PTNLD9-TUMOR_peak_46425 chr6 159063251 159063528 + 13.57078 NA intron (NM_001291603, intron 1 of 4) intron (NM_001291603, intron 1 of 4) 2429 NM_006519 6993 Hs.445999 NM_006519 HPRD:15987 DYNLT1 CW-1|TCTEL1|tctex-1 dynein, light chain, Tctex-type 1 protein-coding 13-PTNLD9-TUMOR_peak_9752 chr11 48073901 48074098 + 13.56141 NA intron (NM_002843, intron 1 of 24) intron (NM_002843, intron 1 of 24) 71889 NM_002843 5795 Hs.318547 NM_002843 HPRD:02955 PTPRJ CD148|DEP1|HPTPeta|R-PTP-ETA|SCC1 protein tyrosine phosphatase, receptor type, J protein-coding 13-PTNLD9-TUMOR_peak_37686 chr4 3834415 3834712 + 13.56141 NA Intergenic Intergenic 66267 NM_000683 152 Hs.123022 NM_000683 HPRD:00085 ADRA2C ADRA2L2|ADRA2RL2|ADRARL2|ALPHA2CAR adrenoceptor alpha 2C protein-coding 13-PTNLD9-TUMOR_peak_3703 chr1 153195672 153195801 + 13.56141 NA Intergenic Intergenic 5676 NM_001195571 574414 Hs.135098 NM_001195571 ENSG00000203783 PRR9 - proline rich 9 protein-coding 13-PTNLD9-TUMOR_peak_45630 chr6 84737625 84737911 + 13.56141 NA Intergenic Intergenic -5652 NM_138409 112609 Hs.370055 NM_138409 HPRD:12843 MRAP2 BMIQ18|C6orf117|bA51G5.2 melanocortin 2 receptor accessory protein 2 protein-coding 13-PTNLD9-TUMOR_peak_40062 chr4 187856036 187856210 + 13.56141 NA Intergenic Intergenic -211136 NM_005245 2195 Hs.481371 NM_005245 HPRD:02986 FAT1 CDHF7|CDHR8|FAT|ME5|hFat1 FAT atypical cadherin 1 protein-coding 13-PTNLD9-TUMOR_peak_22635 chr18 12317778 12317986 + 13.56141 NA intron (NM_032525, intron 3 of 3) intron (NM_032525, intron 3 of 3) 9625 NM_032525 84617 Hs.193491 NM_032525 HPRD:11349 TUBB6 HsT1601|TUBB-5 tubulin, beta 6 class V protein-coding 13-PTNLD9-TUMOR_peak_602 chr1 20606061 20606361 + 13.56141 NA Intergenic L2a|LINE|L2 -11201 NM_001039500 127731 Hs.205178 NM_144623 HPRD:08732 VWA5B1 - von Willebrand factor A domain containing 5B1 protein-coding 13-PTNLD9-TUMOR_peak_50246 chr8 21750741 21750956 + 13.56141 NA Intergenic Intergenic 20357 NM_003974 9046 Hs.71215 NM_003974 HPRD:05411 DOK2 p56DOK|p56dok-2 docking protein 2, 56kDa protein-coding 13-PTNLD9-TUMOR_peak_53900 chr9 90885857 90886146 + 13.56141 NA Intergenic L1M5|LINE|L1 -117296 NM_006717 10927 Hs.146804 NM_006717 HPRD:18096 SPIN1 SPIN spindlin 1 protein-coding 13-PTNLD9-TUMOR_peak_43012 chr5 171742282 171742520 + 13.56141 NA Intergenic MER41A|LTR|ERV1 -31606 NM_152277 92181 Hs.131570 NM_152277 HPRD:13118 UBTD2 DCUBP ubiquitin domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_24316 chr19 17437296 17437642 + 13.55111 NA intron (NM_020959, intron 16 of 17) MER3|DNA|hAT-Charlie 8169 NM_020959 57719 Hs.590990 NM_020959 HPRD:17223 ANO8 KIAA1623|TMEM16H anoctamin 8 protein-coding 13-PTNLD9-TUMOR_peak_4225 chr1 164607040 164607239 + 13.55111 NA intron (NM_001204961, intron 2 of 7) intron (NM_001204961, intron 2 of 7) 78542 NM_002585 5087 Hs.557097 NM_002585 HPRD:08889 PBX1 - pre-B-cell leukemia homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_34274 chr3 38195620 38195803 + 13.55111 NA Intergenic Intergenic -11315 NM_005109 9943 Hs.475970 NM_005109 HPRD:06809 OXSR1 OSR1 oxidative stress responsive 1 protein-coding 13-PTNLD9-TUMOR_peak_20880 chr17 33787444 33787722 + 13.54805 NA Intergenic CpG -11727 NM_144682 146857 Hs.462833 NM_144682 HPRD:08716 SLFN13 SLFN10 schlafen family member 13 protein-coding 13-PTNLD9-TUMOR_peak_17017 chr15 35087616 35087769 + 13.54805 NA intron (NM_005159, intron 1 of 6) intron (NM_005159, intron 1 of 6) 235 NM_005159 70 Hs.118127 NM_005159 HPRD:00015 ACTC1 ACTC|ASD5|CMD1R|CMH11|LVNC4 actin, alpha, cardiac muscle 1 protein-coding 13-PTNLD9-TUMOR_peak_50174 chr8 17929681 17929930 + 13.54805 NA intron (NM_177924, intron 2 of 13) intron (NM_177924, intron 2 of 13) 12074 NM_177924 427 Hs.527412 NM_004315 HPRD:01969 ASAH1 AC|ACDase|ASAH|PHP|PHP32|SMAPME N-acylsphingosine amidohydrolase (acid ceramidase) 1 protein-coding 13-PTNLD9-TUMOR_peak_33962 chr3 16171621 16171831 + 13.54805 NA Intergenic Intergenic -44458 NM_054110 117248 Hs.411308 NM_054110 HPRD:13563 GALNT15 GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5 polypeptide N-acetylgalactosaminyltransferase 15 protein-coding 13-PTNLD9-TUMOR_peak_15905 chr14 59205021 59205269 + 13.54805 NA Intergenic Tigger3b|DNA|TcMar-Tigger -89861 NR_110547 102723742 Hs.232734 NR_110547 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 13-PTNLD9-TUMOR_peak_896 chr1 30057755 30058030 + 13.54805 NA Intergenic Intergenic -381266 NR_110758 101928460 Hs.434659 NR_110758 ENSG00000230523 LOC101928460 - uncharacterized LOC101928460 ncRNA 13-PTNLD9-TUMOR_peak_37684 chr4 3823726 3823862 + 13.54577 NA Intergenic Intergenic 55498 NM_000683 152 Hs.123022 NM_000683 HPRD:00085 ADRA2C ADRA2L2|ADRA2RL2|ADRARL2|ALPHA2CAR adrenoceptor alpha 2C protein-coding 13-PTNLD9-TUMOR_peak_10513 chr11 71326190 71326440 + 13.54577 NA Intergenic HERVE-int|LTR|ERV1 -32394 NM_001005405 440051 Hs.679617 NM_001005405 HPRD:17248 KRTAP5-11 KRTAP5-5|KRTAP5-6|KRTAP5.11 keratin associated protein 5-11 protein-coding 13-PTNLD9-TUMOR_peak_10830 chr11 86199592 86199844 + 13.54577 NA intron (NM_001014811, intron 5 of 13) intron (NM_001014811, intron 5 of 13) 113940 NM_021827 60494 Hs.144913 NM_021827 HPRD:08032 CCDC81 - coiled-coil domain containing 81 protein-coding 13-PTNLD9-TUMOR_peak_17215 chr15 45455102 45455454 + 13.54577 NA intron (NM_017434, intron 32 of 34) intron (NM_017434, intron 32 of 34) 18127 NM_001301171 90525 Hs.310399 NM_138356 HPRD:14272 SHF - Src homology 2 domain containing F protein-coding 13-PTNLD9-TUMOR_peak_32573 chr21 46749604 46750251 + 13.54577 NA Intergenic Intergenic 11978 NR_103811 388830 Hs.592162 NR_103811 ENSG00000237664 LINC00316 C21orf111|NCRNA00316|PRED59 long intergenic non-protein coding RNA 316 ncRNA 13-PTNLD9-TUMOR_peak_13738 chr12 108699426 108699616 + 13.54168 NA intron (NM_001142344, intron 1 of 2) intron (NM_001142344, intron 1 of 2) 14918 NM_001142345 1240 Hs.197143 NM_004072 HPRD:03829 CMKLR1 CHEMERINR|ChemR23|DEZ|RVER1 chemokine-like receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_45175 chr6 45576184 45576593 + 13.54168 NA Intergenic Intergenic 186074 NM_001278478 860 Hs.535845 NM_004348 HPRD:02566 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA runt-related transcription factor 2 protein-coding 13-PTNLD9-TUMOR_peak_40316 chr5 10577740 10577924 + 13.54168 NA intron (NM_001164440, intron 1 of 3) intron (NM_001164440, intron 1 of 3) 13397 NM_001164440 651746 Hs.26039 NM_001164440 ANKRD33B - ankyrin repeat domain 33B protein-coding 13-PTNLD9-TUMOR_peak_51127 chr8 70906900 70907131 + 13.54160 NA Intergenic Intergenic 76547 NM_024504 63978 Hs.736037 NM_024504 HPRD:11457 PRDM14 PFM11 PR domain containing 14 protein-coding 13-PTNLD9-TUMOR_peak_48624 chr7 101915499 101915706 + 13.54160 NA intron (NM_001913, intron 14 of 22) intron (NM_001913, intron 14 of 22) -12751 NM_020979 10603 Hs.489448 NM_020979 SH2B2 APS SH2B adaptor protein 2 protein-coding 13-PTNLD9-TUMOR_peak_42959 chr5 169918353 169918817 + 13.54160 NA intron (NM_001034838, intron 1 of 7) intron (NM_001034838, intron 1 of 7) -12455 NM_001278339 30820 Hs.484111 NM_014592 HPRD:06879 KCNIP1 KCHIP1|VABP Kv channel interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_29499 chr2 201184810 201184990 + 13.54160 NA intron (NM_001282744, intron 1 of 12) intron (NM_001282744, intron 1 of 12) 11227 NM_001282744 26010 Hs.120323 NM_015535 HPRD:10916 SPATS2L DNAPTP6|SGNP spermatogenesis associated, serine-rich 2-like protein-coding 13-PTNLD9-TUMOR_peak_44481 chr6 30778655 30779003 + 13.54160 NA Intergenic MER74A|LTR|ERVL -66502 NM_003897 8870 Hs.76095 NM_003897 HPRD:04295 IER3 DIF-2|DIF2|GLY96|IEX-1|IEX-1L|IEX1|PRG1 immediate early response 3 protein-coding 13-PTNLD9-TUMOR_peak_32951 chr22 24643465 24643745 + 13.54001 NA Intergenic Intergenic -2495 NM_001099782 2687 Hs.437156 NM_004121 HPRD:00666 GGT5 GGT-REL|GGTLA1 gamma-glutamyltransferase 5 protein-coding 13-PTNLD9-TUMOR_peak_26830 chr2 47077924 47078182 + 13.54001 NA intron (NR_024452, intron 1 of 2) intron (NR_024452, intron 1 of 2) 23050 NR_024452 100134259 Hs.114449 NR_024452 ENSG00000239332 LINC01119 - long intergenic non-protein coding RNA 1119 ncRNA 13-PTNLD9-TUMOR_peak_22935 chr18 33655946 33656096 + 13.53459 NA Intergenic Tigger3b|DNA|TcMar-Tigger -8648 NM_018170 55197 Hs.464912 NM_018170 HPRD:10134 RPRD1A HsT3101|P15RS regulation of nuclear pre-mRNA domain containing 1A protein-coding 13-PTNLD9-TUMOR_peak_56470 chrX 128977826 128977988 + 13.53459 NA promoter-TSS (NM_016032) promoter-TSS (NM_016032) 3 NM_016032 51114 Hs.193566 NM_016032 HPRD:06759 ZDHHC9 CGI89|CXorf11|DHHC9|MMSA1|MRXSZ|ZDHHC10|ZNF379|ZNF380 zinc finger, DHHC-type containing 9 protein-coding 13-PTNLD9-TUMOR_peak_19547 chr16 66907076 66907470 + 13.53459 NA Intergenic Intergenic -7110 NM_020786 57546 Hs.632214 NM_020786 HPRD:15112 PDP2 PPM2C2 pyruvate dehyrogenase phosphatase catalytic subunit 2 protein-coding 13-PTNLD9-TUMOR_peak_47461 chr7 48466974 48467118 + 13.53459 NA intron (NM_152701, intron 41 of 61) intron (NM_152701, intron 41 of 61) 255989 NM_152701 154664 Hs.226568 NM_152701 HPRD:07422 ABCA13 - ATP-binding cassette, sub-family A (ABC1), member 13 protein-coding 13-PTNLD9-TUMOR_peak_33194 chr22 36519886 36520157 + 13.53459 NA Intergenic Intergenic 36956 NR_027833 80833 Hs.474737 NM_014349 HPRD:06264 APOL3 APOLIII|CG121 apolipoprotein L, 3 protein-coding 13-PTNLD9-TUMOR_peak_3086 chr1 120510759 120510933 + 13.53459 NA exon (NM_001200001, exon 7 of 22) exon (NM_001200001, exon 7 of 22) -71699 NM_021794 11085 Hs.283011 NM_021794 HPRD:05307 ADAM30 svph4 ADAM metallopeptidase domain 30 protein-coding 13-PTNLD9-TUMOR_peak_24655 chr19 31715179 31715495 + 13.53459 NA Intergenic Intergenic 124853 NM_020856 57616 Hs.278436 NM_020856 HPRD:18351 TSHZ3 TSH3|ZNF537 teashirt zinc finger homeobox 3 protein-coding 13-PTNLD9-TUMOR_peak_43763 chr6 11139335 11139603 + 13.53459 NA TTS (NM_001135575) TTS (NM_001135575) -27398 NM_207582 405754 Hs.631996 NM_207582 HPRD:13648 ERVFRD-1 ERVFRDE1|GLLL6191|HERV-FRD|HERV-W/FRD|UNQ6191|envFRD endogenous retrovirus group FRD, member 1 protein-coding 13-PTNLD9-TUMOR_peak_10670 chr11 75690512 75690686 + 13.53459 NA intron (NM_003369, intron 7 of 14) L1PA6|LINE|L1 164387 NM_003369 7405 Hs.202470 NM_003369 UVRAG DHTX|VPS38|p63 UV radiation resistance associated protein-coding 13-PTNLD9-TUMOR_peak_15821 chr14 55119026 55119212 + 13.53459 NA intron (NM_001161576, intron 1 of 10) intron (NM_001161576, intron 1 of 10) 84789 NM_015589 23034 Hs.98259 NM_015589 HPRD:10209 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 13-PTNLD9-TUMOR_peak_53914 chr9 91274222 91274382 + 13.53459 NA Intergenic MARNA|DNA|TcMar-Mariner -7227 NM_001100111 286238 Hs.434185 NM_001100111 LOC286238 - uncharacterized LOC286238 protein-coding 13-PTNLD9-TUMOR_peak_40696 chr5 40689647 40689822 + 13.53459 NA intron (NM_000958, intron 2 of 2) intron (NM_000958, intron 2 of 2) 9702 NM_000958 5734 Hs.199248 NM_000958 HPRD:03350 PTGER4 EP4|EP4R prostaglandin E receptor 4 (subtype EP4) protein-coding 13-PTNLD9-TUMOR_peak_28624 chr2 140286646 140287006 + 13.53459 NA Intergenic Intergenic 631932 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_19529 chr16 66520670 66520830 + 13.53459 NA intron (NM_001197225, intron 4 of 4) intron (NM_001197225, intron 4 of 4) -10445 NR_109960 101927726 Hs.739193 NR_109960 BEAN1-AS1 CTD-2258A20.5 BEAN1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_7241 chr10 47174102 47174309 + 13.53400 NA promoter-TSS (NM_001040084) promoter-TSS (NM_001040084) -62 NM_001040084 653145 Hs.535306 NM_001040084 ENSG00000165390 ANXA8 ANX8 annexin A8 protein-coding 13-PTNLD9-TUMOR_peak_48041 chr7 75948022 75948287 + 13.53245 NA Intergenic Intergenic 16279 NM_001540 3315 Hs.520973 NM_001540 HPRD:09076 HSPB1 CMT2F|HEL-S-102|HMN2B|HS.76067|HSP27|HSP28|Hsp25|SRP27 heat shock 27kDa protein 1 protein-coding 13-PTNLD9-TUMOR_peak_31771 chr20 61064718 61064925 + 13.52799 NA Intergenic Intergenic -13795 NM_080473 140628 Hs.352250 NM_080473 HPRD:17029 GATA5 GATAS|bB379O24.1 GATA binding protein 5 protein-coding 13-PTNLD9-TUMOR_peak_10089 chr11 62554118 62554223 + 13.52799 NA promoter-TSS (NM_199337) promoter-TSS (NM_199337) -704 NM_199337 374395 Hs.381134 NM_199337 HPRD:14186 TMEM179B - transmembrane protein 179B protein-coding 13-PTNLD9-TUMOR_peak_5913 chr1 234738602 234738801 + 13.52433 NA Intergenic Intergenic 6570 NM_182972 359948 Hs.350268 NM_182972 HPRD:17160 IRF2BP2 - interferon regulatory factor 2 binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_26380 chr2 27273528 27274199 + 13.52111 NA promoter-TSS (NM_021831) promoter-TSS (NM_021831) -628 NM_021831 60509 Hs.138207 NM_021831 HPRD:07968 AGBL5 CCP5 ATP/GTP binding protein-like 5 protein-coding 13-PTNLD9-TUMOR_peak_3286 chr1 145202575 145202862 + 13.52079 NA intron (NM_001277444, intron 20 of 24) intron (NM_001277444, intron 20 of 24) -6395 NM_203458 388677 Hs.655156 NM_203458 HPRD:14833 NOTCH2NL N2N notch 2 N-terminal like protein-coding 13-PTNLD9-TUMOR_peak_46216 chr6 146056286 146056463 + 13.51345 NA exon (NM_005670, exon 1 of 4) exon (NM_005670, exon 1 of 4) 369 NR_038246 100507557 Hs.124537 NR_038244 ENSG00000235652 LOC100507557 - uncharacterized LOC100507557 ncRNA 13-PTNLD9-TUMOR_peak_11311 chr11 116291614 116291794 + 13.51345 NA Intergenic MER1A|DNA|hAT-Charlie 352010 NM_032725 84811 Hs.437341 NM_032725 HPRD:11307 BUD13 Cwc26|fSAP71 BUD13 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_46982 chr7 20105052 20105246 + 13.51345 NA intron (NR_110114, intron 1 of 5) intron (NR_110114, intron 1 of 5) 74900 NR_110114 101927668 Hs.715900 NR_110114 ENSG00000243004 LOC101927668 - uncharacterized LOC101927668 ncRNA 13-PTNLD9-TUMOR_peak_21152 chr17 42164418 42164652 + 13.51345 NA intron (NM_001015053, intron 13 of 26) intron (NM_001015053, intron 13 of 26) 16437 NM_138387 92579 Hs.294005 NM_138387 HPRD:13556 G6PC3 SCN4|UGRP glucose 6 phosphatase, catalytic, 3 protein-coding 13-PTNLD9-TUMOR_peak_52346 chr8 142275436 142275785 + 13.51345 NA Intergenic Intergenic -10882 NM_001286646 57210 Hs.372492 NM_001080431 ENSG00000022567 SLC45A4 - solute carrier family 45, member 4 protein-coding 13-PTNLD9-TUMOR_peak_38780 chr4 85403899 85404278 + 13.51345 NA Intergenic CpG 15299 NM_006168 4825 Hs.546270 NM_006168 NKX6-1 NKX6.1|NKX6A NK6 homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_50324 chr8 22876820 22876983 + 13.51345 NA TTS (NM_147187) TTS (NM_147187) 19809 NM_015178 23221 Hs.372688 NM_015178 HPRD:06300 RHOBTB2 DBC2 Rho-related BTB domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_40371 chr5 14145392 14145559 + 13.50819 NA intron (NM_007118, intron 1 of 56) intron (NM_007118, intron 1 of 56) 1646 NM_007118 7204 Hs.130031 NM_007118 HPRD:03537 TRIO ARHGEF23|tgat trio Rho guanine nucleotide exchange factor protein-coding 13-PTNLD9-TUMOR_peak_37280 chr3 193552406 193552726 + 13.50401 NA Intergenic Intergenic 159461 NR_027764 100128023 Hs.730112 NR_027764 DPPA2P3 - developmental pluripotency associated 2 pseudogene 3 pseudo 13-PTNLD9-TUMOR_peak_37074 chr3 186588672 186588846 + 13.50178 NA Intergenic Intergenic -14847 NR_046662 100874095 Hs.80485 NR_046662 ENSG00000226482 ADIPOQ-AS1 - ADIPOQ antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_10883 chr11 90198782 90199049 + 13.50178 NA intron (NR_104190, intron 1 of 6) AluSz|SINE|Alu 90110 NR_039711 100616186 NR_039711 miRBase:MI0016852 MIR4490 - microRNA 4490 ncRNA 13-PTNLD9-TUMOR_peak_49106 chr7 130849384 130849684 + 13.50178 NA intron (NM_001145354, intron 2 of 18) MIR3|SINE|MIR 54679 NM_001145354 4289 Hs.44693 NM_013255 HPRD:16129 MKLN1 TWA2 muskelin 1, intracellular mediator containing kelch motifs protein-coding 13-PTNLD9-TUMOR_peak_28796 chr2 157111309 157111611 + 13.50104 NA promoter-TSS (NR_110249) promoter-TSS (NR_110249) -17 NR_110250 101929378 Hs.171192 NR_110249 LOC101929378 - uncharacterized LOC101929378 ncRNA 13-PTNLD9-TUMOR_peak_4914 chr1 200863916 200864109 + 13.49572 NA promoter-TSS (NM_001142569) promoter-TSS (NM_001142569) 63 NM_001142569 55765 Hs.518997 NM_018265 HPRD:07712 C1orf106 - chromosome 1 open reading frame 106 protein-coding 13-PTNLD9-TUMOR_peak_4876 chr1 198126045 198126220 + 13.49473 NA promoter-TSS (NM_133494) promoter-TSS (NM_133494) 24 NM_133494 140609 Hs.24119 NM_133494 HPRD:06027 NEK7 - NIMA-related kinase 7 protein-coding 13-PTNLD9-TUMOR_peak_55908 chrX 55026628 55026792 + 13.48856 NA promoter-TSS (NM_001271748) promoter-TSS (NM_001271748) -46 NM_014481 27301 Hs.659558 NM_014481 APEX2 APE2|APEXL2|XTH2|ZGRF2 APEX nuclease (apurinic/apyrimidinic endonuclease) 2 protein-coding 13-PTNLD9-TUMOR_peak_44009 chr6 18161715 18161981 + 13.48856 NA intron (NM_153042, intron 4 of 17) intron (NM_153042, intron 4 of 17) 6229 NM_153042 221656 Hs.709336 NM_153042 HPRD:18524 KDM1B AOF1|C6orf193|LSD2|bA204B7.3|dJ298J15.2 lysine (K)-specific demethylase 1B protein-coding 13-PTNLD9-TUMOR_peak_54331 chr9 109782347 109782582 + 13.48856 NA intron (NR_031752, intron 1 of 3) intron (NR_031752, intron 1 of 3) 66252 NR_031752 100313841 NR_031752 miRBase:MI0010637 MIR548Q - microRNA 548q ncRNA 13-PTNLD9-TUMOR_peak_365 chr1 10313884 10314140 + 13.48856 NA intron (NM_015074, intron 2 of 46) intron (NM_015074, intron 2 of 46) 43248 NM_015074 23095 Hs.97858 NM_015074 HPRD:05818 KIF1B CMT2|CMT2A|CMT2A1|HMSNII|KLP|NBLST1 kinesin family member 1B protein-coding 13-PTNLD9-TUMOR_peak_26977 chr2 56089883 56090103 + 13.48856 NA Intergenic Intergenic 61305 NM_001039349 2202 Hs.76224 NM_004105 HPRD:03331 EFEMP1 DHRD|DRAD|FBLN3|FBNL|FIBL-3|MLVT|MTLV|S1-5 EGF containing fibulin-like extracellular matrix protein 1 protein-coding 13-PTNLD9-TUMOR_peak_42224 chr5 137566094 137566325 + 13.48856 NA Intergenic Intergenic -17177 NM_004661 8697 Hs.73625 NM_004661 HPRD:07221 CDC23 ANAPC8|APC8|CUT23 cell division cycle 23 protein-coding 13-PTNLD9-TUMOR_peak_30353 chr20 5053912 5054190 + 13.48856 NA Intergenic Intergenic 39682 NM_014145 29058 Hs.472024 NM_014145 HPRD:12762 TMEM230 C20orf30|HSPC274|dJ1116H23.2.1 transmembrane protein 230 protein-coding 13-PTNLD9-TUMOR_peak_8984 chr11 8854091 8854280 + 13.48856 NA intron (NM_005418, intron 3 of 22) intron (NM_005418, intron 3 of 22) -21303 NM_139157 6764 Hs.117715 NM_005418 HPRD:00780 ST5 DENND2B|HTS1|p126 suppression of tumorigenicity 5 protein-coding 13-PTNLD9-TUMOR_peak_54520 chr9 116880409 116880616 + 13.48856 NA Intergenic Intergenic -19175 NM_138424 113220 Hs.28149 NM_138424 HPRD:13914 KIF12 - kinesin family member 12 protein-coding 13-PTNLD9-TUMOR_peak_38588 chr4 75186264 75186518 + 13.48341 NA Intergenic Intergenic 12204 NM_001270991 255324 Hs.401237 NM_001013442 HPRD:10866 EPGN ALGV3072|EPG|PRO9904 epithelial mitogen protein-coding 13-PTNLD9-TUMOR_peak_28437 chr2 131090247 131090366 + 13.48341 NA Intergenic Intergenic 9650 NM_032357 84317 Hs.104203 NM_032357 HPRD:14428 CCDC115 ccp1 coiled-coil domain containing 115 protein-coding 13-PTNLD9-TUMOR_peak_1978 chr1 60521066 60521408 + 13.48341 NA intron (NM_152377, intron 2 of 11) intron (NM_152377, intron 2 of 11) 18205 NM_152377 127795 Hs.47385 NM_152377 HPRD:11338 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 13-PTNLD9-TUMOR_peak_30390 chr20 9536493 9536693 + 13.48341 NA intron (NM_177990, intron 7 of 9) MLT1H|LTR|ERVL-MaLR -40948 NR_109957 101929329 Hs.589878 NR_109957 ENSG00000225988 LAMP5-AS1 - LAMP5 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_21810 chr17 63584435 63584717 + 13.48341 NA Intergenic Intergenic -26836 NM_004655 8313 Hs.156527 NM_004655 HPRD:04935 AXIN2 AXIL|ODCRCS axin 2 protein-coding 13-PTNLD9-TUMOR_peak_13706 chr12 107234116 107234285 + 13.48341 NA intron (NM_018157, intron 4 of 8) intron (NM_018157, intron 4 of 8) -65591 NR_040246 100287944 Hs.742087 NR_040246 ENSG00000257545 LOC100287944 - uncharacterized LOC100287944 ncRNA 13-PTNLD9-TUMOR_peak_29627 chr2 205707965 205708081 + 13.48341 NA intron (NM_205863, intron 2 of 21) intron (NM_205863, intron 2 of 21) 297507 NM_057177 117583 Hs.657382 NM_057177 HPRD:09795 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3LC|PAR3beta|Par3Lb par-3 family cell polarity regulator beta protein-coding 13-PTNLD9-TUMOR_peak_4826 chr1 192609214 192609438 + 13.48341 NA intron (NM_002927, intron 3 of 6) intron (NM_002927, intron 3 of 6) 4058 NM_144766 6003 Hs.497220 NM_002927 HPRD:06222 RGS13 - regulator of G-protein signaling 13 protein-coding 13-PTNLD9-TUMOR_peak_11342 chr11 117309133 117309378 + 13.48341 NA intron (NM_020693, intron 24 of 32) MER5A1|DNA|hAT-Charlie 110684 NM_014956 22897 Hs.504009 NM_014956 HPRD:10854 CEP164 NPHP15 centrosomal protein 164kDa protein-coding 13-PTNLD9-TUMOR_peak_43389 chr6 711342 711535 + 13.48341 NA Intergenic Intergenic -18297 NM_018303 55770 Hs.484412 NM_018303 HPRD:11544 EXOC2 SEC5|SEC5L1|Sec5p exocyst complex component 2 protein-coding 13-PTNLD9-TUMOR_peak_31827 chr20 62485461 62485734 + 13.48099 NA Intergenic (CTGGGG)n|Simple_repeat|Simple_repeat -6969 NM_080622 140701 Hs.266774 NM_080622 HPRD:12746 ABHD16B C20orf135|dJ591C20.1 abhydrolase domain containing 16B protein-coding 13-PTNLD9-TUMOR_peak_22977 chr18 38448176 38448404 + 13.47617 NA Intergenic MER44B|DNA|TcMar-Tigger 652271 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 13-PTNLD9-TUMOR_peak_9030 chr11 10512260 10512421 + 13.47617 NA intron (NM_001025390, intron 6 of 14) intron (NM_001025390, intron 6 of 14) 17533 NR_039705 100616263 NR_039705 MIR4485 - microRNA 4485 ncRNA 13-PTNLD9-TUMOR_peak_17413 chr15 63270582 63270958 + 13.47617 NA Intergenic Intergenic -64068 NM_001018006 7168 Hs.133892 NM_000366 HPRD:01839 TPM1 C15orf13|CMD1Y|CMH3|HTM-alpha|LVNC9|TMSA tropomyosin 1 (alpha) protein-coding 13-PTNLD9-TUMOR_peak_5770 chr1 229546904 229547065 + 13.47617 NA Intergenic Intergenic 22859 NM_001100 58 Hs.1288 NM_001100 HPRD:00030 ACTA1 ACTA|ASMA|CFTD|CFTD1|CFTDM|MPFD|NEM1|NEM2|NEM3 actin, alpha 1, skeletal muscle protein-coding 13-PTNLD9-TUMOR_peak_37261 chr3 192619267 192619495 + 13.47617 NA intron (NM_178496, intron 1 of 1) intron (NM_178496, intron 1 of 1) 16569 NM_178496 151963 Hs.151443 NM_178496 HPRD:14092 MB21D2 C3orf59 Mab-21 domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_9269 chr11 19395801 19396072 + 13.47617 NA intron (NM_001111018, intron 1 of 37) intron (NM_001111018, intron 1 of 37) 23665 NM_001111018 89797 Hs.64341 NM_145117 HPRD:07385 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 13-PTNLD9-TUMOR_peak_52240 chr8 137315401 137315561 + 13.47617 NA Intergenic MLT1I|LTR|ERVL-MaLR 845765 NM_006558 10656 Hs.444558 NM_006558 HPRD:10007 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH domain containing, RNA binding, signal transduction associated 3 protein-coding 13-PTNLD9-TUMOR_peak_35804 chr3 128016731 128016869 + 13.47617 NA intron (NM_021937, intron 4 of 6) intron (NM_021937, intron 4 of 6) 144487 NM_021937 60678 Hs.477498 NM_021937 HPRD:07409 EEFSEC EFSEC|SELB eukaryotic elongation factor, selenocysteine-tRNA-specific protein-coding 13-PTNLD9-TUMOR_peak_32264 chr21 37749885 37750043 + 13.47617 NA Intergenic LTR86A1|LTR|ERVL -7725 NM_005441 8208 Hs.75238 NM_005441 CHAF1B CAF-1|CAF-IP60|CAF1|CAF1A|CAF1P60|MPHOSPH7|MPP7 chromatin assembly factor 1, subunit B (p60) protein-coding 13-PTNLD9-TUMOR_peak_30343 chr20 4153196 4153345 + 13.47617 NA intron (NM_001270691, intron 1 of 7) CpG -20467 NR_033917 728228 Hs.636379 NR_033917 ENSG00000230176 LINC01433 - long intergenic non-protein coding RNA 1433 ncRNA 13-PTNLD9-TUMOR_peak_3980 chr1 156897503 156897827 + 13.46885 NA intron (NM_144702, intron 8 of 14) CpG-1817 7241 NM_144702 149499 Hs.491734 NM_144702 HPRD:08737 LRRC71 C1orf92 leucine rich repeat containing 71 protein-coding 13-PTNLD9-TUMOR_peak_39327 chr4 129445594 129445728 + 13.46885 NA Intergenic Intergenic -235677 NM_006320 10424 Hs.507910 NM_006320 HPRD:09665 PGRMC2 DG6|PMBP progesterone receptor membrane component 2 protein-coding 13-PTNLD9-TUMOR_peak_43647 chr6 6750341 6750456 + 13.46569 NA Intergenic Intergenic -127339 NR_026970 285780 Hs.655737 NM_173675 HPRD:08165 LY86-AS1 LY86-AS|LY86AS LY86 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_6633 chr10 21567780 21567885 + 13.46569 NA Intergenic Intergenic 104601 NR_046284 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_42126 chr5 133928107 133928473 + 13.46569 NA Intergenic Intergenic 40243 NM_001033503 51128 Hs.432984 NM_016103 HPRD:09647 SAR1B ANDD|CMRD|GTBPB|SARA2 secretion associated, Ras related GTPase 1B protein-coding 13-PTNLD9-TUMOR_peak_21163 chr17 42385341 42385462 + 13.46569 NA promoter-TSS (NM_006695) promoter-TSS (NM_006695) 398 NR_110802 101926996 Hs.666688 NR_110802 LOC101926996 - uncharacterized LOC101926996 ncRNA 13-PTNLD9-TUMOR_peak_42003 chr5 130648066 130648242 + 13.46569 NA intron (NM_001038702, intron 1 of 4) L1PA3|LINE|L1 48452 NM_020240 56990 Hs.508829 NM_020240 HPRD:16695 CDC42SE2 SPEC2 CDC42 small effector 2 protein-coding 13-PTNLD9-TUMOR_peak_7658 chr10 72648225 72648417 + 13.46569 NA promoter-TSS (NM_001289797) promoter-TSS (NM_001289797) 222 NM_000281 5092 Hs.3192 NM_000281 HPRD:00523 PCBD1 DCOH|PCBD|PCD|PHS pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha protein-coding 13-PTNLD9-TUMOR_peak_26882 chr2 48333816 48334033 + 13.46569 NA Intergenic Intergenic -200992 NM_001190274 80204 Hs.352677 NM_012167 HPRD:06985 FBXO11 FBX11|PRMT9|UBR6|VIT1 F-box protein 11 protein-coding 13-PTNLD9-TUMOR_peak_29797 chr2 217639868 217640134 + 13.46569 NA Intergenic Intergenic -79729 NM_000599 3488 Hs.607212 NM_000599 HPRD:00901 IGFBP5 IBP5 insulin-like growth factor binding protein 5 protein-coding 13-PTNLD9-TUMOR_peak_40495 chr5 25083153 25083330 + 13.46569 NA Intergenic L1PA3|LINE|L1 -242549 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LOC340107 - uncharacterized LOC340107 ncRNA 13-PTNLD9-TUMOR_peak_3875 chr1 155569700 155569895 + 13.46569 NA Intergenic LTR5_Hs|LTR|ERVK -10164 NR_046295 55154 Hs.656547 NM_018116 HPRD:16904 MSTO1 MST misato 1, mitochondrial distribution and morphology regulator protein-coding 13-PTNLD9-TUMOR_peak_1686 chr1 48021070 48021355 + 13.46265 NA Intergenic Intergenic 119523 NM_004474 2306 Hs.166188 NM_004474 HPRD:03735 FOXD2 FKHL17|FREAC-9|FREAC9 forkhead box D2 protein-coding 13-PTNLD9-TUMOR_peak_33197 chr22 36724829 36725025 + 13.46190 NA intron (NM_002473, intron 3 of 40) intron (NM_002473, intron 3 of 40) -41974 NR_106877 102465491 NR_106877 MIR6819 hsa-mir-6819 microRNA 6819 ncRNA 13-PTNLD9-TUMOR_peak_22141 chr17 76141218 76141415 + 13.46190 NA Intergenic Intergenic -1118 NM_001163075 100141515 Hs.633034 NM_001163075 ENSG00000187997 C17orf99 - chromosome 17 open reading frame 99 protein-coding 13-PTNLD9-TUMOR_peak_18930 chr16 29417098 29417261 + 13.46158 NA Intergenic Intergenic -43487 NR_002454 606724 Hs.744975 NR_002454 LOC606724 - coronin, actin binding protein, 1A pseudogene pseudo 13-PTNLD9-TUMOR_peak_43324 chr5 179757818 179758173 + 13.46067 NA intron (NM_005110, intron 5 of 18) intron (NM_005110, intron 5 of 18) 22320 NM_005110 9945 Hs.696497 NM_005110 HPRD:04842 GFPT2 GFAT2 glutamine-fructose-6-phosphate transaminase 2 protein-coding 13-PTNLD9-TUMOR_peak_39022 chr4 107236697 107237136 + 13.46067 NA promoter-TSS (NM_001142416) promoter-TSS (NM_001142416) 63 NM_004757 9255 Hs.591680 NM_004757 HPRD:04676 AIMP1 EMAP2|EMAPII|HLD3|SCYE1|p43 aminoacyl tRNA synthetase complex-interacting multifunctional protein 1 protein-coding 13-PTNLD9-TUMOR_peak_18966 chr16 30006202 30006406 + 13.46067 NA intron (NM_003609, intron 3 of 6) intron (NM_003609, intron 3 of 6) 1113 NM_003609 8479 Hs.567370 NM_003609 HPRD:04531 HIRIP3 - HIRA interacting protein 3 protein-coding 13-PTNLD9-TUMOR_peak_19787 chr16 75599030 75599229 + 13.46067 NA Intergenic Intergenic -1120 NM_007285 11345 Hs.461379 NM_007285 HPRD:16246 GABARAPL2 ATG8|ATG8C|GATE-16|GATE16|GEF-2|GEF2 GABA(A) receptor-associated protein-like 2 protein-coding 13-PTNLD9-TUMOR_peak_53796 chr9 85900488 85900649 + 13.45849 NA intron (NM_001244960, intron 13 of 13) intron (NM_001244960, intron 13 of 13) -18366 NM_001244962 257019 Hs.127535 NM_174938 HPRD:07402 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_17350 chr15 58624184 58624668 + 13.45849 NA Intergenic Intergenic -99749 NM_000236 3990 Hs.654472 NM_000236 HPRD:01058 LIPC HDLCQ12|HL|HTGL|LIPH lipase, hepatic protein-coding 13-PTNLD9-TUMOR_peak_23482 chr18 74270919 74271598 + 13.45849 NA non-coding (NR_015417, exon 3 of 3) non-coding (NR_015417, exon 3 of 3) 30646 NR_015417 284276 Hs.390287 NR_015417 ENSG00000263812 LINC00908 - long intergenic non-protein coding RNA 908 ncRNA 13-PTNLD9-TUMOR_peak_41267 chr5 73313878 73314044 + 13.45849 NA Intergenic Intergenic 204618 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor (GEF) 28 protein-coding 13-PTNLD9-TUMOR_peak_73 chr1 1217500 1217750 + 13.44600 NA exon (NM_001130413, exon 4 of 18) exon (NM_001130413, exon 4 of 18) 1809 NM_001130413 6339 Hs.512681 NM_002978 HPRD:03209 SCNN1D ENaCd|ENaCdelta|SCNED|dNaCh sodium channel, non-voltage-gated 1, delta subunit protein-coding 13-PTNLD9-TUMOR_peak_50964 chr8 55361024 55361183 + 13.44600 NA Intergenic L1MC4|LINE|L1 -9392 NM_022454 64321 Hs.98367 NM_022454 HPRD:18085 SOX17 VUR3 SRY (sex determining region Y)-box 17 protein-coding 13-PTNLD9-TUMOR_peak_38771 chr4 84540295 84540469 + 13.43592 NA Intergenic Intergenic 82912 NM_032717 84803 Hs.99196 NM_032717 HPRD:14417 AGPAT9 AGPAT 10|AGPAT8|GPAT3|LPAAT-theta|MAG1 1-acylglycerol-3-phosphate O-acyltransferase 9 protein-coding 13-PTNLD9-TUMOR_peak_11040 chr11 101488659 101488946 + 13.43592 NA Intergenic Intergenic -34143 NM_004621 7225 Hs.159003 NM_004621 HPRD:04710 TRPC6 FSGS2|TRP6 transient receptor potential cation channel, subfamily C, member 6 protein-coding 13-PTNLD9-TUMOR_peak_19846 chr16 79905865 79906096 + 13.43592 NA Intergenic Intergenic 76834 NR_104661 101928248 Hs.659802 NR_104660 LOC101928248 - uncharacterized LOC101928248 ncRNA 13-PTNLD9-TUMOR_peak_11894 chr12 5112317 5112680 + 13.43592 NA Intergenic Intergenic -40587 NM_002234 3741 Hs.150208 NM_002234 HPRD:08888 KCNA5 ATFB7|HCK1|HK2|HPCN1|KV1.5|PCN1 potassium voltage-gated channel, shaker-related subfamily, member 5 protein-coding 13-PTNLD9-TUMOR_peak_26497 chr2 30570157 30570292 + 13.43592 NA intron (NR_122048, intron 1 of 1) AluJb|SINE|Alu 712 NR_122048 285043 Hs.429119 NR_122048 LOC285043 - uncharacterized LOC285043 ncRNA 13-PTNLD9-TUMOR_peak_54047 chr9 97105229 97105400 + 13.43592 NA intron (NR_033937, intron 2 of 2) Zaphod|DNA|hAT-Tip100 10556 NR_033937 100132077 Hs.679111 NR_033937 ENSG00000232063 LOC100132077 - uncharacterized LOC100132077 ncRNA 13-PTNLD9-TUMOR_peak_16169 chr14 70125454 70125660 + 13.43311 NA intron (NM_014734, intron 2 of 5) intron (NM_014734, intron 2 of 5) 47247 NM_014734 9766 Hs.440025 NM_014734 HPRD:10010 KIAA0247 - KIAA0247 protein-coding 13-PTNLD9-TUMOR_peak_34350 chr3 42694332 42694515 + 13.43116 NA promoter-TSS (NM_145166) promoter-TSS (NM_145166) -753 NM_145166 92999 Hs.409561 NM_145166 ZBTB47 ZNF651 zinc finger and BTB domain containing 47 protein-coding 13-PTNLD9-TUMOR_peak_4987 chr1 201857708 201858088 + 13.43116 NA promoter-TSS (NM_198149) promoter-TSS (NM_198149) 93 NM_198149 149345 Hs.632471 NM_198149 HPRD:12729 SHISA4 C1orf40|TMEM58 shisa family member 4 protein-coding 13-PTNLD9-TUMOR_peak_9026 chr11 10329662 10329806 + 13.42873 NA promoter-TSS (NR_103765) promoter-TSS (NR_103765) -126 NR_103765 100130460 Hs.501890 NR_103765 CAND1.11 - uncharacterized LOC100130460 ncRNA 13-PTNLD9-TUMOR_peak_43036 chr5 172204576 172204869 + 13.42873 NA Intergenic Intergenic -6519 NM_004417 1843 Hs.171695 NM_004417 HPRD:02835 DUSP1 CL100|HVH1|MKP-1|MKP1|PTPN10 dual specificity phosphatase 1 protein-coding 13-PTNLD9-TUMOR_peak_35574 chr3 122688523 122688839 + 13.42873 NA intron (NR_046079, intron 1 of 22) intron (NR_046079, intron 1 of 22) 6300 NM_001256347 54437 Hs.210870 NM_018987 HPRD:15322 SEMA5B SEMAG|SemG sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B protein-coding 13-PTNLD9-TUMOR_peak_20912 chr17 35135707 35135958 + 13.41881 NA Intergenic Intergenic -158940 NM_005568 3975 Hs.443727 NM_005568 HPRD:09067 LHX1 LIM-1|LIM1 LIM homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_29282 chr2 183780334 183780536 + 13.41881 NA Intergenic Intergenic -48937 NM_001463 2487 Hs.128453 NM_001463 HPRD:07282 FRZB FRE|FRITZ|FRP-3|FRZB-1|FRZB-PEN|FRZB1|FZRB|OS1|SFRP3|SRFP3|hFIZ frizzled-related protein protein-coding 13-PTNLD9-TUMOR_peak_41227 chr5 71737715 71737967 + 13.41881 NA Intergenic Intergenic 65408 NM_152625 167465 Hs.370303 NM_152625 HPRD:18329 ZNF366 DCSCRIPT zinc finger protein 366 protein-coding 13-PTNLD9-TUMOR_peak_12853 chr12 53216245 53216372 + 13.41881 NA intron (NM_175834, intron 7 of 8) intron (NM_175834, intron 7 of 8) -8408 NM_002272 3851 Hs.654610 NM_002272 HPRD:00478 KRT4 CK-4|CK4|CYK4|K4|WSN1 keratin 4 protein-coding 13-PTNLD9-TUMOR_peak_43624 chr6 5940868 5941015 + 13.41881 NA Intergenic Intergenic 63336 NM_001278711 51299 Hs.103291 NM_016588 HPRD:07592 NRN1 NRN|dJ380B8.2 neuritin 1 protein-coding 13-PTNLD9-TUMOR_peak_41025 chr5 61440316 61440527 + 13.41881 NA Intergenic Intergenic -161568 NM_001243953 3796 Hs.558351 NM_004520 KIF2A CDCBM3|HK2|KIF2 kinesin heavy chain member 2A protein-coding 13-PTNLD9-TUMOR_peak_2663 chr1 101666162 101666328 + 13.41881 NA Intergenic Intergenic 35839 NR_104626 101928370 Hs.534209 NR_104626 LOC101928370 - uncharacterized LOC101928370 ncRNA 13-PTNLD9-TUMOR_peak_48117 chr7 78101989 78102128 + 13.41841 NA intron (NM_001301128, intron 6 of 20) intron (NM_001301128, intron 6 of 20) -108015 NR_049853 100847045 NR_049853 MIR548AU - microRNA 548au ncRNA 13-PTNLD9-TUMOR_peak_9914 chr11 58396056 58396205 + 13.41841 NA Intergenic Intergenic 5984 NM_000614 1270 Hs.524920 NM_000614 HPRD:00347 CNTF HCNTF ciliary neurotrophic factor protein-coding 13-PTNLD9-TUMOR_peak_26611 chr2 38099055 38099250 + 13.41841 NA intron (NR_110012, intron 1 of 3) intron (NR_110012, intron 1 of 3) 3854 NR_110012 101929559 Hs.468200 NR_110011 ENSG00000237803 LINC00211 NCRNA00211 long intergenic non-protein coding RNA 211 ncRNA 13-PTNLD9-TUMOR_peak_51447 chr8 102388372 102388529 + 13.41841 NA Intergenic Intergenic 7329 NR_002182 83955 Hs.567608 NM_032031 ENSG00000228224 NACAP1 - nascent-polypeptide-associated complex alpha polypeptide pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_24507 chr19 21657534 21657891 + 13.41841 NA Intergenic CpG -8805 NR_037194 400680 Hs.710554 NR_037194 ENSG00000268658 LINC00664 - long intergenic non-protein coding RNA 664 ncRNA 13-PTNLD9-TUMOR_peak_43097 chr5 173632059 173632210 + 13.41841 NA Intergenic Intergenic -131223 NR_125806 101928176 Hs.436014 NR_125806 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 13-PTNLD9-TUMOR_peak_16147 chr14 69553853 69554139 + 13.41841 NA intron (NM_001284206, intron 6 of 8) intron (NM_001284206, intron 6 of 8) 65320 NM_001284207 8816 Hs.509780 NM_003861 HPRD:16032 DCAF5 BCRG2|BCRP2|D14S1461E|WDR22 DDB1 and CUL4 associated factor 5 protein-coding 13-PTNLD9-TUMOR_peak_40287 chr5 10192526 10192698 + 13.41841 NA Intergenic Intergenic 57409 NR_047669 134145 Hs.481569 NM_199133 FAM173B JS-2 family with sequence similarity 173, member B protein-coding 13-PTNLD9-TUMOR_peak_31116 chr20 42584104 42584345 + 13.41841 NA intron (NM_032883, intron 2 of 9) intron (NM_032883, intron 2 of 9) 9688 NM_001098798 84969 Hs.26608 NM_032883 HPRD:12734 TOX2 C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1 TOX high mobility group box family member 2 protein-coding 13-PTNLD9-TUMOR_peak_45107 chr6 43771903 43772103 + 13.41841 NA Intergenic Intergenic 32281 NM_001287044 7422 Hs.73793 NM_003376 HPRD:01889 VEGFA MVCD1|VEGF|VPF vascular endothelial growth factor A protein-coding 13-PTNLD9-TUMOR_peak_32272 chr21 38282242 38282513 + 13.41841 NA intron (NM_001242785, intron 6 of 11) intron (NM_001242785, intron 6 of 11) 56579 NM_001242784 3141 Hs.371350 NM_000411 HPRD:08360 HLCS HCS holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase) protein-coding 13-PTNLD9-TUMOR_peak_42163 chr5 134791955 134792302 + 13.41836 NA Intergenic Intergenic -4039 NM_001099221 497189 Hs.552091 NM_001099221 TIFAB - TRAF-interacting protein with forkhead-associated domain, family member B protein-coding 13-PTNLD9-TUMOR_peak_43586 chr6 4337074 4337297 + 13.41836 NA Intergenic LTR13A|LTR|ERVK 200879 NR_103764 100507506 Hs.665936 NR_103764 ENSG00000234817 LOC100507506 - uncharacterized LOC100507506 ncRNA 13-PTNLD9-TUMOR_peak_27477 chr2 86620808 86621033 + 13.41836 NA Intergenic ERVL-E-int|LTR|ERVL -47351 NM_018433 55818 Hs.557425 NM_018433 HPRD:11054 KDM3A JHDM2A|JHMD2A|JMJD1|JMJD1A|TSGA lysine (K)-specific demethylase 3A protein-coding 13-PTNLD9-TUMOR_peak_39987 chr4 185264903 185265214 + 13.41836 NA intron (NR_040108, intron 2 of 2) LTR33A|LTR|ERVL 10072 NR_040108 728175 Hs.590107 NR_040108 ENSG00000180712 LOC728175 - uncharacterized LOC728175 ncRNA 13-PTNLD9-TUMOR_peak_37497 chr3 197634951 197635732 + 13.41601 NA intron (NM_032263, intron 9 of 11) intron (NM_032263, intron 9 of 11) 41455 NM_001134435 84223 Hs.591675 NM_032263 HPRD:13746 IQCG CFAP122|DRC9 IQ motif containing G protein-coding 13-PTNLD9-TUMOR_peak_22313 chr17 80164128 80164372 + 13.41488 NA intron (NM_198082, intron 1 of 16) MER21A|LTR|ERVL 6439 NM_198082 284001 Hs.631724 NM_152675 HPRD:08041 CCDC57 - coiled-coil domain containing 57 protein-coding 13-PTNLD9-TUMOR_peak_53568 chr9 72287792 72288081 + 13.41488 NA promoter-TSS (NM_001163) promoter-TSS (NM_001163) -661 NM_001163 320 Hs.171939 NM_001163 HPRD:03879 APBA1 D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA amyloid beta (A4) precursor protein-binding, family A, member 1 protein-coding 13-PTNLD9-TUMOR_peak_38126 chr4 25815943 25816326 + 13.41488 NA intron (NM_001297594, intron 9 of 23) intron (NM_001297594, intron 9 of 23) 48519 NM_015187 23231 Hs.479384 NM_015187 HPRD:11105 SEL1L3 Sel-1L3 sel-1 suppressor of lin-12-like 3 (C. elegans) protein-coding 13-PTNLD9-TUMOR_peak_40295 chr5 10310697 10310829 + 13.41488 NA Intergenic Intergenic -2595 NM_138809 134147 Hs.192586 NM_138809 CMBL JS-1 carboxymethylenebutenolidase homolog (Pseudomonas) protein-coding 13-PTNLD9-TUMOR_peak_4963 chr1 201451320 201451464 + 13.41157 NA Intergenic Intergenic -13093 NM_012396 23612 Hs.268557 NM_012396 HPRD:09519 PHLDA3 TIH1 pleckstrin homology-like domain, family A, member 3 protein-coding 13-PTNLD9-TUMOR_peak_37455 chr3 196750247 196750705 + 13.41157 NA intron (NM_005929, intron 4 of 15) intron (NM_005929, intron 4 of 15) 6210 NM_033316 4241 Hs.184727 NM_005929 HPRD:01122 MFI2 CD228|MAP97|MTF1 antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5 protein-coding 13-PTNLD9-TUMOR_peak_36010 chr3 134071170 134071425 + 13.39627 NA Intergenic Intergenic 15407 NR_106885 102466744 NR_106885 MIR6827 hsa-mir-6827 microRNA 6827 ncRNA 13-PTNLD9-TUMOR_peak_49594 chr7 149569940 149570134 + 13.39582 NA promoter-TSS (NM_001100592) promoter-TSS (NM_001100592) -20 NM_145230 155066 Hs.556998 NM_145230 HPRD:12920 ATP6V0E2 ATP6V0E2L|C7orf32 ATPase, H+ transporting V0 subunit e2 protein-coding 13-PTNLD9-TUMOR_peak_9084 chr11 12112343 12112615 + 13.39406 NA Intergenic Intergenic -19644 NM_014632 9645 Hs.501928 NM_014632 HPRD:10085 MICAL2 MICAL-2|MICAL2PV1|MICAL2PV2 microtubule associated monooxygenase, calponin and LIM domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_11858 chr12 3564619 3564756 + 13.39406 NA intron (NM_001256536, intron 1 of 9) intron (NM_001256536, intron 1 of 9) -35677 NM_019854 56341 Hs.504530 NM_019854 HPRD:11029 PRMT8 HRMT1L3|HRMT1L4 protein arginine methyltransferase 8 protein-coding 13-PTNLD9-TUMOR_peak_9490 chr11 34195836 34196190 + 13.39406 NA intron (NM_145804, intron 3 of 16) CpG 68902 NM_001144030 55226 Hs.577281 NM_024662 HPRD:10964 NAT10 ALP|NET43 N-acetyltransferase 10 (GCN5-related) protein-coding 13-PTNLD9-TUMOR_peak_38816 chr4 87813008 87813396 + 13.39406 NA intron (NM_144645, intron 1 of 4) CpG 373 NM_144645 132989 Hs.339646 NM_144645 HPRD:14511 C4orf36 - chromosome 4 open reading frame 36 protein-coding 13-PTNLD9-TUMOR_peak_27085 chr2 65086432 65086613 + 13.39406 NA intron (NR_110224, intron 1 of 4) intron (NR_110224, intron 1 of 4) 4243 NR_110224 101927438 Hs.580313 NR_110224 LOC101927438 - uncharacterized LOC101927438 ncRNA 13-PTNLD9-TUMOR_peak_40001 chr4 185676533 185676707 + 13.38420 NA TTS (NM_001995) TTS (NM_001995) -21334 NM_024629 79682 Hs.575032 NM_024629 HPRD:14722 CENPU CENP50|CENPU50|KLIP1|MLF1IP|PBIP1 centromere protein U protein-coding 13-PTNLD9-TUMOR_peak_6112 chr1 244255635 244255860 + 13.38420 NA Intergenic Intergenic 39240 NM_006352 10472 Hs.69997 NM_006352 HPRD:12231 ZBTB18 C2H2-171|MRD22|RP58|TAZ-1|ZNF238 zinc finger and BTB domain containing 18 protein-coding 13-PTNLD9-TUMOR_peak_44447 chr6 30421480 30421727 + 13.38420 NA Intergenic Intergenic -35580 NM_005516 3133 Hs.650174 NM_005516 HPRD:00877 HLA-E EA1.2|EA2.1|HLA-6.2|MHC|QA1 major histocompatibility complex, class I, E protein-coding 13-PTNLD9-TUMOR_peak_17628 chr15 74249146 74249423 + 13.38420 NA Intergenic Intergenic -28695 NR_040068 100287616 Hs.599785 NR_040066 ENSG00000261801 LOXL1-AS1 - LOXL1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_21485 chr17 48895312 48895521 + 13.38420 NA Intergenic L2c|LINE|L2 -17189 NM_175575 124857 Hs.211475 NM_175575 HPRD:18303 WFIKKN2 GASP-1|WFDC20B|WFIKKNRP|hGASP-1 WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_11476 chr11 123016027 123016214 + 13.38420 NA intron (NM_024769, intron 1 of 6) intron (NM_024769, intron 1 of 6) 49887 NM_024769 79827 Hs.591949 NM_024769 HPRD:16513 CLMP ACAM|ASAM|CSBM|CSBS CXADR-like membrane protein protein-coding 13-PTNLD9-TUMOR_peak_8942 chr11 7626814 7627105 + 13.38420 NA promoter-TSS (NM_001256569) promoter-TSS (NM_001256569) -6 NM_001256569 8495 Hs.655714 NM_003621 HPRD:04391 PPFIBP2 Cclp1 PTPRF interacting protein, binding protein 2 (liprin beta 2) protein-coding 13-PTNLD9-TUMOR_peak_9970 chr11 60693430 60693647 + 13.38420 NA intron (NM_178031, intron 1 of 10) intron (NM_178031, intron 1 of 10) 1625 NM_017870 54972 Hs.118552 NM_017870 HPRD:11034 TMEM132A GBP|HSPA5BP1 transmembrane protein 132A protein-coding 13-PTNLD9-TUMOR_peak_8384 chr10 116173279 116173466 + 13.38420 NA Intergenic Intergenic -8835 NM_032550 84632 Hs.501106 NM_032550 HPRD:13902 AFAP1L2 KIAA1914|XB130 actin filament associated protein 1-like 2 protein-coding 13-PTNLD9-TUMOR_peak_17746 chr15 79090843 79091051 + 13.38420 NA intron (NM_014272, intron 2 of 23) intron (NM_014272, intron 2 of 23) 12826 NM_014272 11173 Hs.16441 NM_014272 HPRD:05422 ADAMTS7 ADAM-TS 7|ADAM-TS7|ADAMTS-7 ADAM metallopeptidase with thrombospondin type 1 motif, 7 protein-coding 13-PTNLD9-TUMOR_peak_8256 chr10 105250456 105250708 + 13.38420 NA intron (NR_120675, intron 3 of 3) intron (NR_120675, intron 3 of 3) -3153 NM_004210 9148 Hs.594708 NM_004210 HPRD:04815 NEURL1 NEUR1|NEURL|RNF67|bA416N2.1|neu|neu-1 neuralized E3 ubiquitin protein ligase 1 protein-coding 13-PTNLD9-TUMOR_peak_18355 chr16 4340337 4340783 + 13.37994 NA Intergenic Intergenic -17559 NM_003223 7023 Hs.513305 NM_003223 HPRD:11795 TFAP4 AP-4|bHLHc41 transcription factor AP-4 (activating enhancer binding protein 4) protein-coding 13-PTNLD9-TUMOR_peak_9273 chr11 19459483 19459657 + 13.37994 NA intron (NM_001111018, intron 1 of 37) Kanga1b|DNA|TcMar-Tc2 69206 NR_049725 100874012 Hs.434602 NR_049725 ENSG00000255043 NAV2-AS5 - NAV2 antisense RNA 5 ncRNA 13-PTNLD9-TUMOR_peak_23951 chr19 10728483 10728796 + 13.37994 NA intron (NM_001145056, intron 1 of 21) intron (NM_001145056, intron 1 of 21) -7532 NM_020428 57153 Hs.534560 NM_020428 HPRD:16198 SLC44A2 CTL2|PP1292 solute carrier family 44 (choline transporter), member 2 protein-coding 13-PTNLD9-TUMOR_peak_18527 chr16 11703461 11703639 + 13.37994 NA Intergenic MIRc|SINE|MIR -22228 NR_024320 9516 Hs.459940 NM_004862 HPRD:10354 LITAF PIG7|SIMPLE|TP53I7 lipopolysaccharide-induced TNF factor protein-coding 13-PTNLD9-TUMOR_peak_50193 chr8 19131471 19131716 + 13.37994 NA Intergenic Intergenic -28561 NR_038919 100128993 Hs.697742 NR_038919 LOC100128993 - uncharacterized LOC100128993 ncRNA 13-PTNLD9-TUMOR_peak_4192 chr1 162511651 162511908 + 13.37994 NA Intergenic Intergenic -19517 NM_003115 6675 Hs.492859 NM_003115 HPRD:04178 UAP1 AGX|AGX1|AGX2|SPAG2 UDP-N-acetylglucosamine pyrophosphorylase 1 protein-coding 13-PTNLD9-TUMOR_peak_32855 chr22 21905041 21905238 + 13.37636 NA exon (NM_001128635, exon 1 of 1).2 exon (NM_001128635, exon 1 of 1).2 234 NM_001128635 440804 Hs.568257 NM_001128635 ENSG00000196934 RIMBP3B RIM-BP3.2|RIM-BP3.B|RIMBP3.2 RIMS binding protein 3B protein-coding 13-PTNLD9-TUMOR_peak_40394 chr5 14926168 14926315 + 13.37111 NA Intergenic Intergenic -54354 NM_054027 56172 Hs.156727 NM_054027 HPRD:05509 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK ANKH inorganic pyrophosphate transport regulator protein-coding 13-PTNLD9-TUMOR_peak_27515 chr2 87785558 87785693 + 13.37111 NA intron (NR_024204, intron 3 of 3) intron (NR_024204, intron 3 of 3) 30651 NR_024206 112597 Hs.652166 NM_052871 HPRD:14654 LINC00152 C2orf59|NCRNA00152 long intergenic non-protein coding RNA 152 ncRNA 13-PTNLD9-TUMOR_peak_49152 chr7 132003626 132003764 + 13.37111 NA intron (NM_020911, intron 3 of 31) intron (NM_020911, intron 3 of 31) 257628 NM_020911 91584 Hs.511454 NM_020911 HPRD:10901 PLXNA4 FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003 plexin A4 protein-coding 13-PTNLD9-TUMOR_peak_11033 chr11 100647970 100648113 + 13.37111 NA intron (NM_152432, intron 2 of 23) intron (NM_152432, intron 2 of 23) 89634 NM_152432 143872 Hs.741465 NM_152432 ENSG00000165895 ARHGAP42 GRAF3 Rho GTPase activating protein 42 protein-coding 13-PTNLD9-TUMOR_peak_28664 chr2 147857559 147857710 + 13.37111 NA Intergenic Intergenic 513009 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein, cytoplasmic 1 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_21421 chr17 48045886 48046175 + 13.37111 NA promoter-TSS (NM_138281) promoter-TSS (NM_138281) -532 NM_138281 1748 Hs.591167 NM_001934 HPRD:03553 DLX4 BP1|DLX7|DLX8|DLX9 distal-less homeobox 4 protein-coding 13-PTNLD9-TUMOR_peak_24113 chr19 13166970 13167161 + 13.37111 NA intron (NM_001271043, intron 2 of 10) intron (NM_001271043, intron 2 of 10) 31670 NM_001271043 4784 Hs.257970 NM_002501 HPRD:01234 NFIX MRSHSS|NF1A|SOTOS2 nuclear factor I/X (CCAAT-binding transcription factor) protein-coding 13-PTNLD9-TUMOR_peak_6787 chr10 29452742 29453010 + 13.37111 NA Intergenic Intergenic -125114 NM_032517 84569 Hs.558572 NM_032517 HPRD:14336 LYZL1 KAAG648|LYC2|PRO1278|bA534G20.1 lysozyme-like 1 protein-coding 13-PTNLD9-TUMOR_peak_21534 chr17 53510573 53510947 + 13.37111 NA Intergenic Intergenic -11419 NM_012329 23531 Hs.463483 NM_012329 HPRD:06835 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation-associated protein-coding 13-PTNLD9-TUMOR_peak_47134 chr7 28725547 28725796 + 13.37111 NA promoter-TSS (NM_001011666) promoter-TSS (NM_001011666) -50 NM_001011666 9586 Hs.437075 NM_004904 HPRD:09896 CREB5 CRE-BPA cAMP responsive element binding protein 5 protein-coding 13-PTNLD9-TUMOR_peak_24970 chr19 40415452 40415816 + 13.37111 NA intron (NM_003890, intron 6 of 35) intron (NM_003890, intron 6 of 35) 24899 NM_003890 8857 Hs.111732 NM_003890 HPRD:10956 FCGBP FC(GAMMA)BP Fc fragment of IgG binding protein protein-coding 13-PTNLD9-TUMOR_peak_22189 chr17 76930049 76930546 + 13.37111 NA Intergenic Intergenic -8825 NM_003255 7077 Hs.633514 NM_003255 HPRD:01784 TIMP2 CSC-21K|DDC8 TIMP metallopeptidase inhibitor 2 protein-coding 13-PTNLD9-TUMOR_peak_7157 chr10 43851376 43851751 + 13.37111 NA Intergenic LTR8|LTR|ERV1 -15529 NM_001184963 53828 Hs.130497 NM_173160 HPRD:07019 FXYD4 CHIF FXYD domain containing ion transport regulator 4 protein-coding 13-PTNLD9-TUMOR_peak_14224 chr12 125120867 125121061 + 13.37111 NA Intergenic LTR8|LTR|ERV1 -68954 NM_001206654 9612 Hs.137510 NM_006312 HPRD:02910 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 13-PTNLD9-TUMOR_peak_19711 chr16 71029802 71029998 + 13.37111 NA intron (NM_001270974, intron 23 of 85) LTR16A1|LTR|ERVL -194839 NM_018052 55697 Hs.445061 NM_018052 HPRD:07660 VAC14 ArPIKfyve|TAX1BP2|TRX Vac14 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_32099 chr21 31519348 31519500 + 13.37111 NA Intergenic LTR19A|LTR|ERV1 19547 NM_012131 26285 Hs.258589 NM_012131 HPRD:10833 CLDN17 - claudin 17 protein-coding 13-PTNLD9-TUMOR_peak_23135 chr18 46428458 46428587 + 13.36161 NA Intergenic Intergenic 40655 NM_001190823 4092 Hs.465087 NM_005904 HPRD:04241 SMAD7 CRCS3|MADH7|MADH8 SMAD family member 7 protein-coding 13-PTNLD9-TUMOR_peak_32500 chr21 45005953 45006243 + 13.36161 NA intron (NM_007031, intron 8 of 8) Plat_L3|LINE|CR1 23772 NR_106718 102464825 NR_106718 MIR6070 hsa-mir-6070 microRNA 6070 ncRNA 13-PTNLD9-TUMOR_peak_27951 chr2 109253884 109254034 + 13.36161 NA intron (NM_001193484, intron 1 of 9) intron (NM_001193484, intron 1 of 9) 16257 NM_001193484 3987 Hs.597715 NM_004987 HPRD:03978 LIMS1 PINCH|PINCH-1|PINCH1 LIM and senescent cell antigen-like domains 1 protein-coding 13-PTNLD9-TUMOR_peak_39292 chr4 125861562 125861773 + 13.36161 NA Intergenic Intergenic -227780 NM_020337 57182 Hs.480694 NM_020337 HPRD:13843 ANKRD50 - ankyrin repeat domain 50 protein-coding 13-PTNLD9-TUMOR_peak_14494 chr13 29327761 29327950 + 13.36161 NA Intergenic Intergenic -34705 NM_181785 283537 Hs.117167 NM_181785 HPRD:14146 SLC46A3 FKSG16 solute carrier family 46, member 3 protein-coding 13-PTNLD9-TUMOR_peak_47287 chr7 41043215 41043506 + 13.36161 NA Intergenic Intergenic -23823 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 13-PTNLD9-TUMOR_peak_897 chr1 30063708 30064007 + 13.36161 NA Intergenic Intergenic -387231 NR_110758 101928460 Hs.434659 NR_110758 ENSG00000230523 LOC101928460 - uncharacterized LOC101928460 ncRNA 13-PTNLD9-TUMOR_peak_22791 chr18 21425039 21425255 + 13.36161 NA intron (NM_198129, intron 30 of 74) intron (NM_198129, intron 30 of 74) -27837 NM_001127718 3909 Hs.436367 NM_000227 HPRD:02883 LAMA3 BM600|E170|LAMNA|LOCS|lama3a laminin, alpha 3 protein-coding 13-PTNLD9-TUMOR_peak_26642 chr2 38920173 38920315 + 13.36161 NA intron (NM_138801, intron 4 of 6) intron (NM_138801, intron 4 of 6) 27192 NM_138801 130589 Hs.435012 NM_138801 HPRD:13559 GALM GLAT|HEL-S-63p|IBD1 galactose mutarotase (aldose 1-epimerase) protein-coding 13-PTNLD9-TUMOR_peak_38438 chr4 56169981 56170405 + 13.36161 NA Intergenic Intergenic -42195 NM_024592 79644 Hs.39311 NM_024592 HPRD:07825 SRD5A3 CDG1P|CDG1Q|KRIZI|SRD5A2L|SRD5A2L1 steroid 5 alpha-reductase 3 protein-coding 13-PTNLD9-TUMOR_peak_43620 chr6 5866764 5867227 + 13.36161 NA Intergenic L3|LINE|CR1 137282 NM_001278711 51299 Hs.103291 NM_016588 HPRD:07592 NRN1 NRN|dJ380B8.2 neuritin 1 protein-coding 13-PTNLD9-TUMOR_peak_53736 chr9 81638087 81638367 + 13.36161 NA Intergenic Intergenic 122354 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 13-PTNLD9-TUMOR_peak_41276 chr5 73553505 73553789 + 13.36161 NA Intergenic Intergenic 50503 NR_105009 102503429 Hs.519391 NR_105009 LINC01335 - long intergenic non-protein coding RNA 1335 ncRNA 13-PTNLD9-TUMOR_peak_303 chr1 8950527 8950788 + 13.35730 NA Intergenic AluY|SINE|Alu -11506 NM_001428 2023 Hs.517145 NM_001428 HPRD:01400 ENO1 ENO1L1|MPB1|NNE|PPH enolase 1, (alpha) protein-coding 13-PTNLD9-TUMOR_peak_27727 chr2 97172380 97172589 + 13.35730 NA intron (NR_104346, intron 1 of 3) intron (NR_104346, intron 1 of 3) -1362 NM_001285485 93082 Hs.149219 NM_001080535 HPRD:14296 NEURL3 LINCR neuralized E3 ubiquitin protein ligase 3 protein-coding 13-PTNLD9-TUMOR_peak_37569 chr4 1243780 1243952 + 13.35730 NA promoter-TSS (NM_001012614) promoter-TSS (NM_001012614) 638 NR_033339 92070 Hs.561314 NM_052861 CTBP1-AS2 C4orf42|CTBP1-AS1 CTBP1 antisense RNA 2 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_26427 chr2 28498986 28499221 + 13.35583 NA intron (NM_199193, intron 11 of 13) intron (NM_199193, intron 11 of 13) 34223 NR_038319 100505716 Hs.679092 NR_038319 ENSG00000223522 LOC100505716 - uncharacterized LOC100505716 ncRNA 13-PTNLD9-TUMOR_peak_30561 chr20 19945282 19945485 + 13.35583 NA intron (NM_001242581, intron 5 of 11) intron (NM_001242581, intron 5 of 11) -52551 NM_181528 51126 Hs.368783 NM_016100 HPRD:07136 NAA20 NAT3|NAT3P|NAT5|NAT5P|dJ1002M8.1 N(alpha)-acetyltransferase 20, NatB catalytic subunit protein-coding 13-PTNLD9-TUMOR_peak_44921 chr6 39219256 39219578 + 13.35583 NA Intergenic Intergenic -22166 NM_003740 8645 Hs.444448 NM_003740 HPRD:04604 KCNK5 K2p5.1|TASK-2|TASK2 potassium channel, subfamily K, member 5 protein-coding 13-PTNLD9-TUMOR_peak_2399 chr1 89464521 89464625 + 13.35583 NA Intergenic Intergenic -5930 NM_001008661 56267 Hs.481898 NM_001008661 HPRD:13752 CCBL2 KAT3|KATIII cysteine conjugate-beta lyase 2 protein-coding 13-PTNLD9-TUMOR_peak_31260 chr20 45593052 45593255 + 13.35583 NA intron (NM_005244, intron 1 of 15) intron (NM_005244, intron 1 of 15) 69890 NM_172110 2139 Hs.472877 NM_005244 HPRD:09041 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 13-PTNLD9-TUMOR_peak_30789 chr20 31683866 31684055 + 13.35583 NA intron (NM_182519, intron 10 of 15) intron (NM_182519, intron 10 of 15) 14642 NM_182519 149954 Hs.38961 NM_182519 HPRD:16645 BPIFB4 C20orf186|LPLUNC4|RY2G5|dJ726C3.5 BPI fold containing family B, member 4 protein-coding 13-PTNLD9-TUMOR_peak_1044 chr1 34338373 34338628 + 13.35583 NA intron (NR_038372, intron 3 of 7) MLT1F2-int|LTR|ERVL-MaLR 3943 NR_038372 402779 Hs.666207 NR_038372 ENSG00000231163 CSMD2-AS1 - CSMD2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_25774 chr19 58111141 58111270 + 13.35583 NA promoter-TSS (NM_020880) promoter-TSS (NM_020880) -48 NM_020880 348327 Hs.97111 NM_020880 HPRD:15822 ZNF530 - zinc finger protein 530 protein-coding 13-PTNLD9-TUMOR_peak_36309 chr3 148365658 148365796 + 13.35583 NA Intergenic AluY|SINE|Alu -49931 NM_009585 185 Hs.477887 NM_000685 HPRD:00107 AGTR1 AG2S|AGTR1B|AT1|AT1AR|AT1B|AT1BR|AT1R|AT2R1|HAT1R angiotensin II receptor, type 1 protein-coding 13-PTNLD9-TUMOR_peak_26624 chr2 38482018 38482241 + 13.35583 NA Intergenic AluJb|SINE|Alu 122303 NM_022374 64225 Hs.727652 NM_022374 HPRD:10662 ATL2 ARL3IP2|ARL6IP2|atlastin2 atlastin GTPase 2 protein-coding 13-PTNLD9-TUMOR_peak_5337 chr1 210361659 210361836 + 13.35583 NA Intergenic HERVH-int|LTR|ERV1 -44448 NM_019605 56256 Hs.600545 NM_019605 SERTAD4 DJ667H12.2 SERTA domain containing 4 protein-coding 13-PTNLD9-TUMOR_peak_54678 chr9 124454988 124455216 + 13.35583 NA intron (NM_032552, intron 2 of 16) intron (NM_032552, intron 2 of 16) -49962 NM_138709 153090 Hs.522378 NM_032552 HPRD:09903 DAB2IP AF9Q34|AIP-1|AIP1|DIP1/2 DAB2 interacting protein protein-coding 13-PTNLD9-TUMOR_peak_15740 chr14 51326695 51326857 + 13.35583 NA Intergenic Intergenic -12102 NM_001206673 145447 Hs.271896 NM_181533 ENSG00000131969 ABHD12B BEM46L3|C14orf29|c14_5314 abhydrolase domain containing 12B protein-coding 13-PTNLD9-TUMOR_peak_5723 chr1 228717550 228718515 + 13.34656 NA Intergenic HSAT4|Satellite|centr -18043 NM_001287262 100129094 Hs.730208 NM_001287262 BTNL10 BTN4|BUTR1 butyrophilin-like 10 protein-coding 13-PTNLD9-TUMOR_peak_54088 chr9 98075525 98075666 + 13.34016 NA intron (NM_000136, intron 1 of 14) CpG 3941 NM_001243743 2176 Hs.494529 NM_000136 HPRD:01967 FANCC FA3|FAC|FACC Fanconi anemia, complementation group C protein-coding 13-PTNLD9-TUMOR_peak_27588 chr2 90276867 90277009 + 13.34016 NA Intergenic CpG 1165054 NR_039635 100616399 NR_039635 miRBase:MI0016776 MIR4436A - microRNA 4436a ncRNA 13-PTNLD9-TUMOR_peak_45860 chr6 109053745 109054029 + 13.33290 NA Intergenic Intergenic -18970 NR_033376 387111 Hs.520310 NR_033376 ENSG00000203801 LINC00222 C6orf181|NCRNA00222|dJ354J5.2 long intergenic non-protein coding RNA 222 ncRNA 13-PTNLD9-TUMOR_peak_45744 chr6 92401157 92401405 + 13.33290 NA Intergenic Zaphod|DNA|hAT-Tip100 -1135 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility candidate 6 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_9486 chr11 34066555 34066773 + 13.33290 NA Intergenic Intergenic -6566 NM_005898 4076 Hs.471818 NM_005898 HPRD:03108 CAPRIN1 GPIAP1|GPIP137|GRIP137|M11S1|RNG105|p137GPI cell cycle associated protein 1 protein-coding 13-PTNLD9-TUMOR_peak_17879 chr15 85384151 85384317 + 13.33290 NA intron (NM_020778, intron 5 of 13) intron (NM_020778, intron 5 of 13) 24323 NM_020778 57538 Hs.459183 NM_020778 HPRD:11365 ALPK3 MAK|MIDORI alpha-kinase 3 protein-coding 13-PTNLD9-TUMOR_peak_50221 chr8 20266639 20266974 + 13.33290 NA Intergenic Intergenic 133522 NR_047509 100874051 Hs.385799 NR_047509 ENSG00000253733 LZTS1-AS1 - LZTS1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_48538 chr7 100323432 100323621 + 13.33290 NA Intergenic MIRc|SINE|MIR 5103 NM_000799 2056 Hs.2303 NM_000799 HPRD:00586 EPO EP|MVCD2 erythropoietin protein-coding 13-PTNLD9-TUMOR_peak_13056 chr12 58259074 58259472 + 13.33290 NA Intergenic CpG -18526 NM_005730 10106 Hs.524530 NM_005730 HPRD:12281 CTDSP2 OS4|PSR2|SCP2 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2 protein-coding 13-PTNLD9-TUMOR_peak_11618 chr11 129245832 129246067 + 13.33290 NA promoter-TSS (NM_003658) promoter-TSS (NM_003658) 68 NM_003658 8538 Hs.591944 NM_003658 HPRD:16074 BARX2 - BARX homeobox 2 protein-coding 13-PTNLD9-TUMOR_peak_6737 chr10 26757219 26757451 + 13.33290 NA intron (NM_019043, intron 2 of 14) L2c|LINE|L2 30069 NM_019043 54518 Hs.310421 NM_019043 HPRD:16420 APBB1IP INAG1|PREL1|RARP1|RIAM amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein protein-coding 13-PTNLD9-TUMOR_peak_3714 chr1 153462807 153463344 + 13.33156 NA Intergenic Intergenic -29938 NM_002963 6278 Hs.112408 NM_002963 HPRD:02645 S100A7 PSOR1|S100A7c S100 calcium binding protein A7 protein-coding 13-PTNLD9-TUMOR_peak_54680 chr9 124482618 124482982 + 13.32815 NA intron (NM_032552, intron 3 of 16) MIRb|SINE|MIR -22264 NM_138709 153090 Hs.522378 NM_032552 HPRD:09903 DAB2IP AF9Q34|AIP-1|AIP1|DIP1/2 DAB2 interacting protein protein-coding 13-PTNLD9-TUMOR_peak_41262 chr5 73163222 73163500 + 13.32428 NA intron (NM_001244364, intron 10 of 27) intron (NM_001244364, intron 10 of 27) 54018 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor (GEF) 28 protein-coding 13-PTNLD9-TUMOR_peak_6073 chr1 241870397 241870661 + 13.32428 NA intron (NM_144625, intron 7 of 26) L2a|LINE|L2 54949 NM_144625 128025 Hs.97527 NM_144625 HPRD:13412 WDR64 - WD repeat domain 64 protein-coding 13-PTNLD9-TUMOR_peak_18013 chr15 93374978 93375314 + 13.32428 NA Intergenic Intergenic 36432 NR_033769 728619 Hs.684129 NR_033769 ASB9P1 - ankyrin repeat and SOCS box containing 9 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_26149 chr2 12003894 12004236 + 13.32428 NA Intergenic Intergenic -26953 NR_036226 100422996 NR_036226 miRBase:MI0015872 MIR4262 - microRNA 4262 ncRNA 13-PTNLD9-TUMOR_peak_20768 chr17 27181885 27182094 + 13.32428 NA promoter-TSS (NM_005702) promoter-TSS (NM_005702) -54 NM_005702 26284 Hs.3426 NM_005702 HPRD:08466 ERAL1 ERA|ERAL1A|H-ERA|HERA-A|HERA-B Era-like 12S mitochondrial rRNA chaperone 1 protein-coding 13-PTNLD9-TUMOR_peak_36151 chr3 139770532 139770696 + 13.32428 NA intron (NM_022131, intron 1 of 16) MER5B|DNA|hAT-Charlie 116587 NM_022131 64084 Hs.158529 NM_022131 CLSTN2 ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma calsyntenin 2 protein-coding 13-PTNLD9-TUMOR_peak_5345 chr1 211688671 211688830 + 13.32428 NA Intergenic CpG -22491 NM_183059 343035 Hs.632495 NM_183059 HPRD:12726 RD3 C1orf36|LCA12 retinal degeneration 3 protein-coding 13-PTNLD9-TUMOR_peak_54084 chr9 97786039 97786194 + 13.32428 NA intron (NM_032823, intron 11 of 14) intron (NM_032823, intron 11 of 14) -41516 NR_106729 102466518 NR_106729 MIR6081 hsa-mir-6081 microRNA 6081 ncRNA 13-PTNLD9-TUMOR_peak_6015 chr1 237018087 237018268 + 13.32428 NA intron (NM_001291940, intron 17 of 31) intron (NM_001291940, intron 17 of 31) 59596 NM_000254 4548 Hs.498187 NM_000254 HPRD:01136 MTR HMAG|MS|cblG 5-methyltetrahydrofolate-homocysteine methyltransferase protein-coding 13-PTNLD9-TUMOR_peak_7275 chr10 48255028 48255246 + 13.32428 NA promoter-TSS (NM_001271703) promoter-TSS (NM_001271703) -67 NM_001271702 653145 Hs.535306 NM_001040084 ENSG00000165390 ANXA8 ANX8 annexin A8 protein-coding 13-PTNLD9-TUMOR_peak_50675 chr8 39797554 39797687 + 13.32428 NA intron (NM_194294, intron 1 of 10) intron (NM_194294, intron 1 of 10) 5146 NM_194294 169355 Hs.676257 NM_194294 HPRD:14113 IDO2 INDOL1 indoleamine 2,3-dioxygenase 2 protein-coding 13-PTNLD9-TUMOR_peak_13853 chr12 111334412 111334669 + 13.32428 NA intron (NM_001286243, intron 8 of 10) MER5B|DNA|hAT-Charlie 23864 NM_000432 4633 Hs.75535 NM_000432 HPRD:01181 MYL2 CMH10|MLC2 myosin, light chain 2, regulatory, cardiac, slow protein-coding 13-PTNLD9-TUMOR_peak_4968 chr1 201476075 201476418 + 13.32428 NA promoter-TSS (NM_001193571) promoter-TSS (NM_001193571) 141 NM_004078 1465 Hs.108080 NM_004078 HPRD:00470 CSRP1 CRP|CRP1|CSRP|CYRP|D1S181E|HEL-141 cysteine and glycine-rich protein 1 protein-coding 13-PTNLD9-TUMOR_peak_23273 chr18 55480619 55480807 + 13.32428 NA Intergenic Intergenic -10386 NM_005603 5205 Hs.216623 NM_005603 HPRD:03867 ATP8B1 ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1 ATPase, aminophospholipid transporter, class I, type 8B, member 1 protein-coding 13-PTNLD9-TUMOR_peak_56591 chrX 149108108 149108318 + 13.32049 NA intron (NR_027456, intron 1 of 11) intron (NR_027456, intron 1 of 11) 1447 NR_027456 100272228 Hs.496916 NR_027456 ENSG00000235703 LINC00894 - long intergenic non-protein coding RNA 894 ncRNA 13-PTNLD9-TUMOR_peak_13876 chr12 112450477 112450776 + 13.31834 NA promoter-TSS (NM_006817) promoter-TSS (NM_006817) 397 NM_001294314 89894 Hs.506815 NM_138341 HPRD:11275 TMEM116 - transmembrane protein 116 protein-coding 13-PTNLD9-TUMOR_peak_3899 chr1 155971733 155971992 + 13.30719 NA Intergenic Intergenic 18896 NM_003145 6746 Hs.74564 NM_003145 HPRD:02923 SSR2 TLAP|TRAP-BETA|TRAPB signal sequence receptor, beta (translocon-associated protein beta) protein-coding 13-PTNLD9-TUMOR_peak_25003 chr19 41172399 41172549 + 13.30719 NA 3' UTR (NM_004756, exon 10 of 10) 3' UTR (NM_004756, exon 10 of 10) 23553 NM_001289980 9253 Hs.326953 NM_004756 NUMBL CAG3A|CTG3a|NBL|NUMB-R|NUMBLIKE|NUMBR|TNRC23 numb homolog (Drosophila)-like protein-coding 13-PTNLD9-TUMOR_peak_49182 chr7 134117144 134117674 + 13.30719 NA Intergenic MER1A|DNA|hAT-Charlie 26479 NM_001628 231 Hs.521212 NM_001628 HPRD:00071 AKR1B1 ADR|ALDR1|ALR2|AR aldo-keto reductase family 1, member B1 (aldose reductase) protein-coding 13-PTNLD9-TUMOR_peak_47418 chr7 46691287 46691658 + 13.30719 NA Intergenic MIRc|SINE|MIR -730601 NM_001013398 3486 Hs.450230 NM_000598 HPRD:00899 IGFBP3 BP-53|IBP3 insulin-like growth factor binding protein 3 protein-coding 13-PTNLD9-TUMOR_peak_51074 chr8 67383669 67383834 + 13.30461 NA Intergenic Intergenic -21740 NM_152765 254778 Hs.268869 NM_152765 HPRD:14565 C8orf46 - chromosome 8 open reading frame 46 protein-coding 13-PTNLD9-TUMOR_peak_53068 chr9 34254725 34254916 + 13.30461 NA intron (NM_194313, intron 12 of 12) intron (NM_194313, intron 12 of 12) 74378 NM_194313 347240 Hs.710246 NM_194313 HPRD:12963 KIF24 C9orf48|bA571F15.4 kinesin family member 24 protein-coding 13-PTNLD9-TUMOR_peak_43373 chr6 188882 189043 + 13.30461 NA Intergenic Intergenic -40803 NR_109817 441123 NR_109817 ENSG00000170590 LINC00266-3 C6orf88|NCRNA00266-3|NCRNA00266C|dJ24O22.2 long intergenic non-protein coding RNA 266-3 ncRNA 13-PTNLD9-TUMOR_peak_31367 chr20 48178985 48179107 + 13.30461 NA intron (NM_000961, intron 1 of 9) intron (NM_000961, intron 1 of 9) 5661 NM_000961 5740 Hs.302085 NM_000961 HPRD:09046 PTGIS CYP8|CYP8A1|PGIS|PTGI prostaglandin I2 (prostacyclin) synthase protein-coding 13-PTNLD9-TUMOR_peak_47319 chr7 43251422 43251598 + 13.30461 NA intron (NM_015052, intron 2 of 29) Charlie2a|DNA|hAT-Charlie 61016 NR_037508 100500829 NR_037508 MIR3943 - microRNA 3943 ncRNA 13-PTNLD9-TUMOR_peak_21712 chr17 60798026 60798166 + 13.30461 NA promoter-TSS (NR_036146) promoter-TSS (NR_036146) -762 NR_036146 100422923 NR_036146 MIR548W - microRNA 548w ncRNA 13-PTNLD9-TUMOR_peak_31259 chr20 45443571 45443780 + 13.30461 NA Intergenic Intergenic -79588 NM_005244 2139 Hs.472877 NM_005244 HPRD:09041 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 13-PTNLD9-TUMOR_peak_17411 chr15 63142993 63143202 + 13.30461 NA Intergenic Intergenic 26941 NR_029709 406965 NR_029709 MIR190A MIR190|MIRN190|hsa-mir-190a|miR-190 microRNA 190a ncRNA 13-PTNLD9-TUMOR_peak_46913 chr7 14801227 14801406 + 13.30461 NA intron (NM_004080, intron 1 of 24) intron (NM_004080, intron 1 of 24) 79759 NM_145695 1607 Hs.567255 NM_004080 HPRD:06819 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase, beta 90kDa protein-coding 13-PTNLD9-TUMOR_peak_48518 chr7 100080948 100081247 + 13.30042 NA promoter-TSS (NM_173564) promoter-TSS (NM_173564) -453 NM_173564 222950 Hs.320086 NM_173564 HPRD:13427 NYAP1 C7orf51 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 1 protein-coding 13-PTNLD9-TUMOR_peak_19627 chr16 68299201 68299535 + 13.30042 NA intron (NM_003983, intron 1 of 10) L2b|LINE|L2 949 NM_001076785 9057 Hs.679580 NM_003983 HPRD:12031 SLC7A6 LAT-2|LAT3|y+LAT-2 solute carrier family 7 (amino acid transporter light chain, y+L system), member 6 protein-coding 13-PTNLD9-TUMOR_peak_49819 chr7 156690445 156690649 + 13.29353 NA Intergenic L2b|LINE|L2 -4645 NM_022458 64327 Hs.209989 NM_022458 HPRD:05700 LMBR1 ACHP|C7orf2|DIF14|PPD2|TPT|ZRS limb development membrane protein 1 protein-coding 13-PTNLD9-TUMOR_peak_16167 chr14 70120980 70121169 + 13.29353 NA intron (NM_014734, intron 1 of 5) L2b|LINE|L2 42764 NM_014734 9766 Hs.440025 NM_014734 HPRD:10010 KIAA0247 - KIAA0247 protein-coding 13-PTNLD9-TUMOR_peak_30394 chr20 9679955 9680115 + 13.29217 NA intron (NM_177990, intron 2 of 9) intron (NM_177990, intron 2 of 9) 139652 NM_177990 57144 Hs.32539 NM_020341 HPRD:06423 PAK7 PAK5 p21 protein (Cdc42/Rac)-activated kinase 7 protein-coding 13-PTNLD9-TUMOR_peak_27041 chr2 62899862 62900076 + 13.29217 NA Intergenic Intergenic -1017 NM_001142615 23301 Hs.271667 NM_015252 HPRD:10109 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_45908 chr6 111912656 111912857 + 13.29217 NA exon (NM_001164281, exon 2 of 9) exon (NM_001164281, exon 2 of 9) 14721 NR_028338 10758 Hs.561514 NM_147200 HPRD:06129 TRAF3IP2 ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13 TRAF3 interacting protein 2 protein-coding 13-PTNLD9-TUMOR_peak_39921 chr4 182335832 182336026 + 13.29217 NA Intergenic L1PA2|LINE|L1 -255627 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 13-PTNLD9-TUMOR_peak_52801 chr9 16213877 16214092 + 13.29217 NA intron (NR_073471, intron 3 of 3) intron (NR_073471, intron 3 of 3) 39121 NM_001271829 100129385 Hs.586441 NM_001271829 ENSG00000205549 C9orf92 Em:AL513424.1 chromosome 9 open reading frame 92 protein-coding 13-PTNLD9-TUMOR_peak_26922 chr2 53094304 53094441 + 13.29217 NA Intergenic Intergenic -900557 NM_001008708 494143 Hs.585944 NM_001008708 HPRD:17418 CHAC2 - ChaC, cation transport regulator homolog 2 (E. coli) protein-coding 13-PTNLD9-TUMOR_peak_27362 chr2 79664654 79664876 + 13.29217 NA Intergenic Intergenic 63205 NR_110289 101927987 Hs.574704 NR_110289 LOC101927987 - uncharacterized LOC101927987 ncRNA 13-PTNLD9-TUMOR_peak_49445 chr7 142461297 142461448 + 13.29164 NA TTS (NM_002769) TTS (NM_002769) 4053 NM_002769 5644 Hs.449281 NM_002769 HPRD:02039 PRSS1 TRP1|TRY1|TRY4|TRYP1 protease, serine, 1 (trypsin 1) protein-coding 13-PTNLD9-TUMOR_peak_26667 chr2 39951115 39951361 + 13.28495 NA Intergenic Intergenic 55178 NM_025264 80745 Hs.468254 NM_025264 HPRD:15506 THUMPD2 C2orf8 THUMP domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_16579 chr14 100752008 100752214 + 13.28495 NA Intergenic CpG 8417 NR_106822 102466730 NR_106822 MIR6764 hsa-mir-6764 microRNA 6764 ncRNA 13-PTNLD9-TUMOR_peak_5680 chr1 227950242 227950357 + 13.28495 NA intron (NM_053052, intron 3 of 4) intron (NM_053052, intron 3 of 4) -27187 NM_001161465 65094 Hs.555974 NM_023007 HPRD:07774 JMJD4 - jumonji domain containing 4 protein-coding 13-PTNLD9-TUMOR_peak_38880 chr4 90033518 90033684 + 13.28495 NA promoter-TSS (NM_145715) promoter-TSS (NM_145715) -367 NM_145715 166815 Hs.58924 NM_145715 HPRD:18186 TIGD2 HEL106 tigger transposable element derived 2 protein-coding 13-PTNLD9-TUMOR_peak_28431 chr2 130917928 130918173 + 13.28482 NA intron (NR_033232, intron 9 of 17) intron (NR_033232, intron 9 of 17) -15343 NM_207310 91409 Hs.29383 NM_207310 HPRD:08534 CCDC74B - coiled-coil domain containing 74B protein-coding 13-PTNLD9-TUMOR_peak_33897 chr3 14592766 14592955 + 13.28324 NA Intergenic Intergenic -11010 NM_001080423 80852 Hs.517819 NM_001080423 GRIP2 - glutamate receptor interacting protein 2 protein-coding 13-PTNLD9-TUMOR_peak_26622 chr2 38406208 38406672 + 13.28324 NA intron (NR_027252, intron 2 of 2) L2|LINE|L2 48193 NR_027252 285154 Hs.353894 NM_173652 HPRD:14592 CYP1B1-AS1 C2orf58 CYP1B1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_42826 chr5 158889804 158889968 + 13.28194 NA intron (NR_027110, intron 2 of 6) AluJb|SINE|Alu 3398 NR_027110 285627 Hs.552766 NR_027110 ENSG00000253298 LOC285627 - uncharacterized LOC285627 ncRNA 13-PTNLD9-TUMOR_peak_41762 chr5 112426629 112426759 + 13.28194 NA intron (NM_002387, intron 6 of 16) intron (NM_002387, intron 6 of 16) 114287 NM_001242377 167227 Hs.443875 NM_152624 HPRD:13125 DCP2 NUDT20 decapping mRNA 2 protein-coding 13-PTNLD9-TUMOR_peak_40411 chr5 16179017 16179378 + 13.28194 NA exon (NM_001102562, exon 1 of 4) exon (NM_001102562, exon 1 of 4) 700 NM_001102562 441061 Hs.662216 NM_001102562 ENSG00000183654 MARCH11 MARCH-XI membrane-associated ring finger (C3HC4) 11 protein-coding 13-PTNLD9-TUMOR_peak_11084 chr11 104261507 104261699 + 13.28194 NA Intergenic Intergenic 218427 NR_120585 102723895 Hs.48803 NR_120585 LOC102723895 - uncharacterized LOC102723895 ncRNA 13-PTNLD9-TUMOR_peak_19375 chr16 54682673 54682807 + 13.28194 NA Intergenic Intergenic 279950 NR_034106 643911 Hs.237396 NR_034105 CRNDE LINC00180|NCRNA00180 colorectal neoplasia differentially expressed (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_18699 chr16 19822508 19822997 + 13.28194 NA intron (NM_153208, intron 8 of 9) intron (NM_153208, intron 8 of 9) 73399 NM_016235 51704 Hs.148685 NM_016235 HPRD:16177 GPRC5B RAIG-2|RAIG2 G protein-coupled receptor, class C, group 5, member B protein-coding 13-PTNLD9-TUMOR_peak_27542 chr2 88650242 88650460 + 13.28194 NA Intergenic CpG 101702 NM_001135649 344167 Hs.716722 NM_001135649 FOXI3 - forkhead box I3 protein-coding 13-PTNLD9-TUMOR_peak_11922 chr12 5612971 5613187 + 13.28194 NA Intergenic Intergenic 9781 NM_002527 4908 Hs.99171 NM_002527 HPRD:01219 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 13-PTNLD9-TUMOR_peak_4941 chr1 201269085 201269258 + 13.28194 NA intron (NM_001005337, intron 2 of 13) intron (NM_001005337, intron 2 of 13) 16591 NM_000299 5317 Hs.497350 NM_000299 HPRD:03579 PKP1 B6P plakophilin 1 protein-coding 13-PTNLD9-TUMOR_peak_3446 chr1 148537294 148537475 + 13.27970 NA intron (NR_104217, intron 2 of 17) intron (NR_104217, intron 2 of 17) -20804 NM_001170755 284565 Hs.523572 NM_173638 HPRD:14710 NBPF15 AB14|AG3|NBPF16 neuroblastoma breakpoint family, member 15 protein-coding 13-PTNLD9-TUMOR_peak_43558 chr6 3841985 3842159 + 13.27765 NA Intergenic Intergenic -7560 NM_012135 26240 Hs.140944 NM_012135 HPRD:16883 FAM50B D6S2654E|X5L family with sequence similarity 50, member B protein-coding 13-PTNLD9-TUMOR_peak_13723 chr12 108079382 108079716 + 13.27765 NA promoter-TSS (NM_007062) promoter-TSS (NM_007062) -41 NM_007062 11137 Hs.506652 NM_007062 HPRD:11464 PWP1 IEF-SSP-9502 PWP1 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_13656 chr12 104982535 104982702 + 13.27765 NA intron (NM_018413, intron 1 of 2) L1MB3|LINE|L1 -2793 NR_037487 100500843 NR_037487 MIR3922 - microRNA 3922 ncRNA 13-PTNLD9-TUMOR_peak_34911 chr3 69290032 69290242 + 13.27765 NA intron (NM_015123, intron 7 of 22) intron (NM_015123, intron 7 of 22) -118391 NM_198271 56203 Hs.350621 NM_198271 HPRD:13993 LMOD3 - leiomodin 3 (fetal) protein-coding 13-PTNLD9-TUMOR_peak_32283 chr21 38593574 38593759 + 13.27765 NA non-coding (NR_026719, exon 3 of 3) non-coding (NR_026719, exon 3 of 3) 12862 NR_026719 257203 Hs.505159 NM_148675 HPRD:10925 DSCR9 NCRNA00038 Down syndrome critical region gene 9 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_52622 chr9 1979858 1980267 + 13.27765 NA Intergenic Intergenic -35157 NM_003070 6595 Hs.298990 NM_003070 HPRD:02483 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 13-PTNLD9-TUMOR_peak_31040 chr20 38912455 38912608 + 13.27765 NA Intergenic Intergenic 279428 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 - long intergenic non-protein coding RNA 1370 ncRNA 13-PTNLD9-TUMOR_peak_22110 chr17 75283136 75283341 + 13.26704 NA promoter-TSS (NM_001113492) promoter-TSS (NM_001113492) -735 NM_001113492 10801 Hs.440932 NM_006640 HPRD:10360 SEPT9 AF17q25|MSF|MSF1|NAPB|PNUTL4|SINT1|SeptD1 septin 9 protein-coding 13-PTNLD9-TUMOR_peak_4149 chr1 161424197 161424641 + 13.26249 NA Intergenic CpG -50786 NM_021642 2212 Hs.352642 NM_021642 HPRD:00906 FCGR2A CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|IGFR2 Fc fragment of IgG, low affinity IIa, receptor (CD32) protein-coding 13-PTNLD9-TUMOR_peak_35190 chr3 100119899 100120062 + 13.26084 NA promoter-TSS (NM_001085451) promoter-TSS (NM_001085451) -57 NM_001085451 348801 Hs.591294 NM_001085451 ENSG00000206535 LNP1 NP3 leukemia NUP98 fusion partner 1 protein-coding 13-PTNLD9-TUMOR_peak_42100 chr5 133580929 133581218 + 13.26084 NA Intergenic LTR18B|LTR|ERVL -19123 NM_002715 5515 Hs.105818 NM_002715 PPP2CA PP2Ac|PP2CA|PP2Calpha|RP-C protein phosphatase 2, catalytic subunit, alpha isozyme protein-coding 13-PTNLD9-TUMOR_peak_27701 chr2 96307559 96308001 + 13.26081 NA Intergenic Intergenic 50014 NM_138800 129868 Hs.232026 NM_138800 HPRD:15560 TRIM43 TRIM43A tripartite motif containing 43 protein-coding 13-PTNLD9-TUMOR_peak_38626 chr4 77447891 77448111 + 13.24790 NA intron (NM_020859, intron 1 of 10) intron (NM_020859, intron 1 of 10) -46720 NR_039654 100616299 NR_039654 MIR4450 - microRNA 4450 ncRNA 13-PTNLD9-TUMOR_peak_17024 chr15 35585747 35585915 + 13.24790 NA Intergenic Intergenic 56304 NR_003144 723972 Hs.631698 NR_003144 ENSG00000259516 ANP32AP1 - acidic (leucine-rich) nuclear phosphoprotein 32 family, member A pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_4163 chr1 161676421 161676562 + 13.24790 NA promoter-TSS (NM_001184867) promoter-TSS (NM_001184867) -271 NM_001184870 84824 Hs.266331 NM_032738 ENSG00000132185 FCRLA FCRL|FCRL1|FCRLM1|FCRLX|FCRLb|FCRLc1|FCRLc2|FCRLd|FCRLe|FCRX|FREB Fc receptor-like A protein-coding 13-PTNLD9-TUMOR_peak_2555 chr1 95017645 95017904 + 13.24790 NA Intergenic Intergenic -10361 NM_001993 2152 Hs.62192 NM_001993 HPRD:00603 F3 CD142|TF|TFA coagulation factor III (thromboplastin, tissue factor) protein-coding 13-PTNLD9-TUMOR_peak_40354 chr5 13632898 13633070 + 13.24790 NA Intergenic LTR33A|LTR|ERVL 311605 NM_001369 1767 Hs.212360 NM_001369 HPRD:04514 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein, axonemal, heavy chain 5 protein-coding 13-PTNLD9-TUMOR_peak_42898 chr5 167243071 167243285 + 13.24790 NA intron (NM_001122679, intron 2 of 28) intron (NM_001122679, intron 2 of 28) 416199 NR_109894 101927862 Hs.659376 NR_109894 ENSG00000253978 CTB-178M22.2 - uncharacterized LOC101927862 ncRNA 13-PTNLD9-TUMOR_peak_17131 chr15 42349601 42349935 + 13.24790 NA Intergenic Intergenic -6867 NM_001206670 123745 Hs.668060 NM_001080490 HPRD:13510 PLA2G4E - phospholipase A2, group IVE protein-coding 13-PTNLD9-TUMOR_peak_6160 chr1 246044552 246044721 + 13.24790 NA intron (NM_022743, intron 8 of 11) intron (NM_022743, intron 8 of 11) 536078 NM_022743 64754 Hs.567571 NM_022743 HPRD:12297 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_46633 chr7 419303 419609 + 13.24790 NA promoter-TSS (NR_033960) promoter-TSS (NR_033960) 65 NR_033960 442497 Hs.704269 NR_033960 ENSG00000249574 LOC442497 - uncharacterized LOC442497 ncRNA 13-PTNLD9-TUMOR_peak_5140 chr1 204367663 204367876 + 13.24790 NA Intergenic Intergenic 13176 NM_032833 84919 Hs.304376 NM_032833 HPRD:17892 PPP1R15B CREP protein phosphatase 1, regulatory subunit 15B protein-coding 13-PTNLD9-TUMOR_peak_49686 chr7 151403079 151403310 + 13.24216 NA intron (NM_001040633, intron 3 of 15) intron (NM_001040633, intron 3 of 15) -73850 NM_024429 51422 Hs.647072 NM_016203 HPRD:04119 PRKAG2 AAKG|AAKG2|CMH6|H91620p|WPWS protein kinase, AMP-activated, gamma 2 non-catalytic subunit protein-coding 13-PTNLD9-TUMOR_peak_31772 chr20 61077038 61077318 + 13.24216 NA Intergenic THE1C|LTR|ERVL-MaLR -26152 NM_080473 140628 Hs.352250 NM_080473 HPRD:17029 GATA5 GATAS|bB379O24.1 GATA binding protein 5 protein-coding 13-PTNLD9-TUMOR_peak_47479 chr7 50602651 50602809 + 13.24216 NA intron (NR_033845, intron 1 of 4) intron (NR_033845, intron 1 of 4) 3273 NR_033845 100129427 Hs.680434 NR_033845 ENSG00000226122 DDC-AS1 - DDC antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_39953 chr4 184270064 184270441 + 13.24216 NA Intergenic MER41B|LTR|ERV1 -26673 NM_001185149 100132463 Hs.727475 NM_001185149 ENSG00000185758 CLDN24 CLDN21 claudin 24 protein-coding 13-PTNLD9-TUMOR_peak_56645 chrX 152126498 152126905 + 13.24216 NA intron (NM_001178106, intron 17 of 23) MER57-int|LTR|ERV1 16486 NM_001178115 7739 Hs.16622 NM_007150 HPRD:02306 ZNF185 - zinc finger protein 185 (LIM domain) protein-coding 13-PTNLD9-TUMOR_peak_26091 chr2 10442645 10442864 + 13.24216 NA promoter-TSS (NM_002149) promoter-TSS (NM_002149) -276 NM_002149 3241 Hs.580427 NM_002149 HPRD:02564 HPCAL1 BDR1|HLP2|VILIP-3 hippocalcin-like 1 protein-coding 13-PTNLD9-TUMOR_peak_41716 chr5 110427959 110428108 + 13.24216 NA exon (NM_139281, exon 1 of 23) exon (NM_139281, exon 1 of 23) 163 NM_139281 134430 Hs.533237 NM_139281 HPRD:10305 WDR36 GLC1G|TA-WDRP|TAWDRP|UTP21 WD repeat domain 36 protein-coding 13-PTNLD9-TUMOR_peak_28445 chr2 131148859 131149078 + 13.23848 NA Intergenic CpG 35388 NM_001142370 26469 Hs.516390 NM_014369 HPRD:05961 PTPN18 BDP1|PTP-HSCF protein tyrosine phosphatase, non-receptor type 18 (brain-derived) protein-coding 13-PTNLD9-TUMOR_peak_8331 chr10 112174427 112174714 + 13.23848 NA Intergenic Intergenic -83055 NM_004419 1847 Hs.2128 NM_004419 HPRD:04349 DUSP5 DUSP|HVH3 dual specificity phosphatase 5 protein-coding 13-PTNLD9-TUMOR_peak_43376 chr6 292070 292467 + 13.23456 NA non-coding (NR_104473, exon 1 of 6) non-coding (NR_104473, exon 1 of 6) 211 NM_001286555 56940 Hs.29106 NM_020185 HPRD:13255 DUSP22 JKAP|JSP-1|JSP1|LMW-DSP2|LMWDSP2|MKP-x|MKPX|VHX dual specificity phosphatase 22 protein-coding 13-PTNLD9-TUMOR_peak_959 chr1 32178286 32178633 + 13.23456 NA Intergenic MIR|SINE|MIR -8691 NM_001856 1307 Hs.368921 NM_001856 HPRD:00381 COL16A1 447AA collagen, type XVI, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_44660 chr6 33173323 33173452 + 13.23175 NA intron (NM_014234, intron 4 of 8).2 intron (NM_014234, intron 4 of 8).2 973 NM_014234 7923 Hs.415058 NM_014234 HPRD:03248 HSD17B8 D6S2245E|FABG|FABGL|H2-KE6|HKE6|KE6|RING2|SDR30C1|dJ1033B10.9 hydroxysteroid (17-beta) dehydrogenase 8 protein-coding 13-PTNLD9-TUMOR_peak_32709 chr22 18841859 18842196 + 13.23175 NA Intergenic Intergenic -51709 NM_005675 8214 Hs.474185 NM_005675 HPRD:03177 DGCR6 - DiGeorge syndrome critical region gene 6 protein-coding 13-PTNLD9-TUMOR_peak_41341 chr5 76086518 76086917 + 13.23075 NA Intergenic Intergenic -28116 NM_005242 2150 Hs.744181 NM_005242 HPRD:02960 F2RL1 GPR11|PAR2 coagulation factor II (thrombin) receptor-like 1 protein-coding 13-PTNLD9-TUMOR_peak_39698 chr4 154669708 154669915 + 13.23075 NA exon (NM_173662, exon 3 of 9) exon (NM_173662, exon 3 of 9) 11576 NM_173662 285533 Hs.388364 NM_173662 HPRD:15262 RNF175 - ring finger protein 175 protein-coding 13-PTNLD9-TUMOR_peak_44360 chr6 28317644 28317796 + 13.23075 NA promoter-TSS (NM_024493) promoter-TSS (NM_024493) 29 NM_001242894 80317 Hs.380930 NM_024493 HPRD:11705 ZKSCAN3 ZF47|ZFP306|ZNF306|ZNF309|ZSCAN13|ZSCAN35|Zfp47|dJ874C20.1|dJ874C20.1.|zfp-47 zinc finger with KRAB and SCAN domains 3 protein-coding 13-PTNLD9-TUMOR_peak_37099 chr3 186904872 186905171 + 13.23075 NA Intergenic Intergenic -10253 NM_153708 132112 Hs.518480 NM_153708 HPRD:16449 RTP1 Z3CXXC1 receptor (chemosensory) transporter protein 1 protein-coding 13-PTNLD9-TUMOR_peak_37246 chr3 191965060 191965387 + 13.23075 NA intron (NR_046596, intron 1 of 4) intron (NR_046596, intron 1 of 4) 8804 NR_046596 100873986 Hs.581652 NR_046596 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_56273 chrX 100075197 100075404 + 13.23075 NA promoter-TSS (NM_001325) promoter-TSS (NM_001325) -48 NM_001325 1478 Hs.132370 NM_001325 HPRD:02652 CSTF2 CstF-64 cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa protein-coding 13-PTNLD9-TUMOR_peak_20460 chr17 9274397 9274713 + 13.23075 NA intron (NM_004853, intron 7 of 7) intron (NM_004853, intron 7 of 7) -192120 NR_110828 101928266 Hs.639880 NR_110828 ENSG00000262966 LOC101928266 - uncharacterized LOC101928266 ncRNA 13-PTNLD9-TUMOR_peak_23534 chr18 77348980 77349173 + 13.23075 NA Intergenic Intergenic -90725 NM_004715 9150 Hs.465490 NM_004715 HPRD:05377 CTDP1 CCFDN|FCP1 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1 protein-coding 13-PTNLD9-TUMOR_peak_36735 chr3 171874214 171874408 + 13.23075 NA intron (NM_001135095, intron 3 of 25) intron (NM_001135095, intron 3 of 25) 115967 NM_001135095 64778 Hs.744888 NM_022763 HPRD:10943 FNDC3B FAD104|PRO4979|YVTM2421 fibronectin type III domain containing 3B protein-coding 13-PTNLD9-TUMOR_peak_42690 chr5 150976844 150977020 + 13.23075 NA Intergenic Intergenic -28427 NM_001447 2196 Hs.591255 NM_001447 HPRD:05041 FAT2 CDHF8|CDHR9|HFAT2|MEGF1 FAT atypical cadherin 2 protein-coding 13-PTNLD9-TUMOR_peak_39569 chr4 147558172 147558353 + 13.22997 NA Intergenic CpG -1783 NM_004575 5458 Hs.266 NM_004575 HPRD:00220 POU4F2 BRN3.2|BRN3B|Brn-3b POU class 4 homeobox 2 protein-coding 13-PTNLD9-TUMOR_peak_5132 chr1 204263534 204263760 + 13.22997 NA intron (NM_014935, intron 1 of 22) MIRb|SINE|MIR 65410 NM_014935 22874 Hs.253146 NM_014935 HPRD:09685 PLEKHA6 PEPP-3|PEPP3 pleckstrin homology domain containing, family A member 6 protein-coding 13-PTNLD9-TUMOR_peak_15753 chr14 52267140 52267326 + 13.22997 NA Intergenic L1HS|LINE|L1 -59789 NM_053064 54331 Hs.187772 NM_053064 HPRD:16234 GNG2 - guanine nucleotide binding protein (G protein), gamma 2 protein-coding 13-PTNLD9-TUMOR_peak_54550 chr9 117573698 117573830 + 13.22997 NA Intergenic L1ME3F|LINE|L1 -5356 NM_005118 9966 Hs.23349 NM_005118 HPRD:04956 TNFSF15 TL1|TL1A|VEGI|VEGI192A tumor necrosis factor (ligand) superfamily, member 15 protein-coding 13-PTNLD9-TUMOR_peak_13125 chr12 63242341 63242593 + 13.22997 NA intron (NM_020700, intron 1 of 9) intron (NM_020700, intron 1 of 9) 86198 NM_020700 57460 Hs.435479 NM_020700 ENSG00000111110 PPM1H ARHCL1|NERPP-2C|URCC2 protein phosphatase, Mg2+/Mn2+ dependent, 1H protein-coding 13-PTNLD9-TUMOR_peak_15142 chr13 113540123 113540381 + 13.22997 NA 3' UTR (NM_015205, exon 30 of 30) 3' UTR (NM_015205, exon 30 of 30) 82700 NR_034002 100289410 Hs.667436 NR_034002 MCF2L-AS1 - MCF2L antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_41067 chr5 65163720 65163945 + 13.22997 NA Intergenic Intergenic -58550 NM_001253701 55914 Hs.591774 NM_018695 HPRD:06090 ERBB2IP ERBIN|HEL-S-78|LAP2 erbb2 interacting protein protein-coding 13-PTNLD9-TUMOR_peak_24141 chr19 13907637 13907854 + 13.22381 NA intron (NM_023072, intron 1 of 12) intron (NM_023072, intron 1 of 12) 1471 NM_023072 65249 Hs.466015 NM_023072 HPRD:15904 ZSWIM4 - zinc finger, SWIM-type containing 4 protein-coding 13-PTNLD9-TUMOR_peak_33641 chr3 8486050 8486392 + 13.22162 NA intron (NR_033378, intron 3 of 3) intron (NR_033378, intron 3 of 3) 57123 NR_033378 100288428 Hs.651576 NR_033378 ENSG00000227110 LMCD1-AS1 - LMCD1 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_24294 chr19 16934088 16934252 + 13.22162 NA Intergenic MER41A|LTR|ERV1 -6028 NM_015260 23309 Hs.13999 NM_015260 HPRD:09691 SIN3B - SIN3 transcription regulator family member B protein-coding 13-PTNLD9-TUMOR_peak_37806 chr4 6993681 6993932 + 13.22162 NA intron (NM_001286805, intron 1 of 11) MIRb|SINE|MIR 4571 NM_001286805 57533 Hs.518611 NM_020773 HPRD:11623 TBC1D14 - TBC1 domain family, member 14 protein-coding 13-PTNLD9-TUMOR_peak_36378 chr3 150087920 150088389 + 13.20962 NA Intergenic Intergenic -38634 NM_014779 9819 Hs.722470 NM_014779 HPRD:11101 TSC22D2 TILZ4a|TILZ4b|TILZ4c TSC22 domain family, member 2 protein-coding 13-PTNLD9-TUMOR_peak_28300 chr2 121832573 121833037 + 13.20409 NA Intergenic Intergenic 209973 NM_014553 29842 Hs.156471 NM_014553 HPRD:18175 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2-like 1 protein-coding 13-PTNLD9-TUMOR_peak_4410 chr1 172418156 172418544 + 13.20321 NA intron (NM_139240, intron 3 of 6) intron (NM_139240, intron 3 of 6) -3683 NM_001300760 92346 Hs.517991 NM_139240 HPRD:14291 C1orf105 - chromosome 1 open reading frame 105 protein-coding 13-PTNLD9-TUMOR_peak_37901 chr4 8558035 8558249 + 13.19958 NA Intergenic Intergenic -23822 NR_045511 27201 Hs.740355 NM_080819 GPR78 - G protein-coupled receptor 78 protein-coding 13-PTNLD9-TUMOR_peak_6167 chr1 246305791 246305958 + 13.19958 NA intron (NM_022743, intron 5 of 11) MER44C|DNA|TcMar-Tigger 274840 NM_022743 64754 Hs.567571 NM_022743 HPRD:12297 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_6385 chr10 6019502 6020031 + 13.19958 NA promoter-TSS (NM_002189) promoter-TSS (NM_002189) -192 NM_172200 3601 Hs.445124 NM_002189 HPRD:03045 IL15RA CD215 interleukin 15 receptor, alpha protein-coding 13-PTNLD9-TUMOR_peak_53662 chr9 77567618 77567918 + 13.19958 NA promoter-TSS (NM_017998) promoter-TSS (NM_017998) 34 NM_017998 55071 Hs.532296 NM_017998 HPRD:12957 C9orf40 - chromosome 9 open reading frame 40 protein-coding 13-PTNLD9-TUMOR_peak_30937 chr20 35476804 35476988 + 13.19958 NA intron (NM_080627, intron 1 of 14) MIRc|SINE|MIR 11380 NM_199181 140710 Hs.460807 NM_080627 HPRD:11116 SOGA1 C20orf117|KIAA0889|SOGA suppressor of glucose, autophagy associated 1 protein-coding 13-PTNLD9-TUMOR_peak_43020 chr5 171880201 171880378 + 13.19958 NA intron (NM_001017995, intron 1 of 12) intron (NM_001017995, intron 1 of 12) 1238 NM_001017995 285590 Hs.285666 NM_001017995 HPRD:18591 SH3PXD2B FAD49|FTHS|HOFI|KIAA1295|TKS4|TSK4 SH3 and PX domains 2B protein-coding 13-PTNLD9-TUMOR_peak_22828 chr18 24060846 24061419 + 13.19958 NA intron (NM_001258222, intron 2 of 4) L2a|LINE|L2 58173 NR_110762 100506787 Hs.734746 NR_110762 LOC100506787 - uncharacterized LOC100506787 ncRNA 13-PTNLD9-TUMOR_peak_22197 chr17 77034639 77034906 + 13.19958 NA intron (NM_198593, intron 1 of 3) MARNA|DNA|TcMar-Mariner 4391 NM_198593 114897 Hs.201398 NM_030968 ENSG00000173918 C1QTNF1 CTRP1|GIP|ZSIG37 C1q and tumor necrosis factor related protein 1 protein-coding 13-PTNLD9-TUMOR_peak_31169 chr20 43803205 43803560 + 13.19192 NA promoter-TSS (NM_002638) promoter-TSS (NM_002638) -158 NM_002638 5266 Hs.112341 NM_002638 HPRD:15947 PI3 ESI|SKALP|WAP3|WFDC14|cementoin peptidase inhibitor 3, skin-derived protein-coding 13-PTNLD9-TUMOR_peak_2779 chr1 110186058 110186207 + 13.19192 NA Intergenic CpG -12566 NM_147148 2948 Hs.348387 NM_000850 HPRD:00706 GSTM4 GSTM4-4|GTM4 glutathione S-transferase mu 4 protein-coding 13-PTNLD9-TUMOR_peak_55556 chrX 13845411 13845718 + 13.19192 NA intron (NM_001001994, intron 1 of 6) intron (NM_001001994, intron 1 of 6) -10250 NM_001001996 2824 Hs.495710 NM_005278 HPRD:02082 GPM6B M6B glycoprotein M6B protein-coding 13-PTNLD9-TUMOR_peak_43723 chr6 9503709 9503909 + 13.19192 NA Intergenic Eulor5A|DNA?|DNA? 851367 NR_004855 728655 Hs.214343 NR_004855 ENSG00000251164 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 13-PTNLD9-TUMOR_peak_11004 chr11 96220585 96220729 + 13.19192 NA intron (NR_047481, intron 1 of 4) L1PA6|LINE|L1 19384 NR_047481 100874053 Hs.742044 NR_047481 JRKL-AS1 - JRKL antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_16603 chr14 102500684 102500946 + 13.19192 NA intron (NM_001376, intron 56 of 77) intron (NM_001376, intron 56 of 77) 52697 NM_005348 3320 Hs.525600 NM_005348 HPRD:00777 HSP90AA1 EL52|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp89|Hsp90|LAP-2|LAP2 heat shock protein 90kDa alpha (cytosolic), class A member 1 protein-coding 13-PTNLD9-TUMOR_peak_1822 chr1 53975068 53975274 + 13.19192 NA intron (NM_147193, intron 8 of 9) intron (NM_147193, intron 8 of 9) 50099 NM_033067 63948 Hs.131654 NM_033067 HPRD:16828 DMRTB1 - DMRT-like family B with proline-rich C-terminal, 1 protein-coding 13-PTNLD9-TUMOR_peak_26534 chr2 33295028 33295184 + 13.19192 NA intron (NM_206943, intron 3 of 33) intron (NM_206943, intron 3 of 33) -64558 NM_001166264 4052 Hs.619315 NM_000627 HPRD:01039 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_13828 chr12 110869297 110869686 + 13.19192 NA Intergenic AluY|SINE|Alu 18725 NM_001278556 10094 Hs.524741 NM_001278556 HPRD:09175 ARPC3 ARC21|p21-Arc actin related protein 2/3 complex, subunit 3, 21kDa protein-coding 13-PTNLD9-TUMOR_peak_37910 chr4 8738262 8738525 + 13.19192 NA Intergenic Intergenic 135150 NM_018942 3166 Hs.104134 NM_018942 HPRD:00873 HMX1 H6|NKX5-3 H6 family homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_34953 chr3 72211477 72211767 + 13.19192 NA intron (NR_038221, intron 2 of 2) intron (NR_038221, intron 2 of 2) 11214 NR_038221 201617 Hs.382623 NR_038221 ENSG00000243083 LINC00870 - long intergenic non-protein coding RNA 870 ncRNA 13-PTNLD9-TUMOR_peak_11691 chr11 130965611 130965890 + 13.18431 NA Intergenic Intergenic -179368 NM_001301089 399979 Hs.444024 NM_014758 HPRD:18621 SNX19 CHET8 sorting nexin 19 protein-coding 13-PTNLD9-TUMOR_peak_32054 chr21 29094516 29094700 + 13.18431 NA promoter-TSS (NR_024357) promoter-TSS (NR_024357) -90 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 13-PTNLD9-TUMOR_peak_48099 chr7 77111010 77111213 + 13.18431 NA Intergenic Intergenic -55662 NM_002835 5782 Hs.61812 NM_002835 HPRD:02513 PTPN12 PTP-PEST|PTPG1 protein tyrosine phosphatase, non-receptor type 12 protein-coding 13-PTNLD9-TUMOR_peak_315 chr1 9224068 9224263 + 13.18431 NA Intergenic Intergenic -12329 NR_029610 407040 Hs.730325 NR_029610 miRBase:MI0000268 MIR34A MIRN34A|miRNA34A|mir-34 microRNA 34a ncRNA 13-PTNLD9-TUMOR_peak_43700 chr6 8083677 8083947 + 13.18194 NA intron (NM_004280, intron 3 of 3) intron (NM_004280, intron 3 of 3) 2954 NR_003703 100124533 NR_003703 SCARNA27 - small Cajal body-specific RNA 27 ncRNA 13-PTNLD9-TUMOR_peak_14514 chr13 30498783 30498992 + 13.18194 NA intron (NR_047501, intron 1 of 1) intron (NR_047501, intron 1 of 1) 1901 NR_047501 100861573 Hs.585619 NR_047501 ENSG00000224405 LINC00572 - long intergenic non-protein coding RNA 572 ncRNA 13-PTNLD9-TUMOR_peak_15290 chr14 22838568 22838785 + 13.18019 NA Intergenic ERVL-E-int|LTR|ERVL 219467 NM_001344 1603 Hs.82890 NM_001344 HPRD:02589 DAD1 OST2 defender against cell death 1 protein-coding 13-PTNLD9-TUMOR_peak_10374 chr11 67494536 67494795 + 13.18019 NA Intergenic HERVE-int|LTR|ERV1 -45980 NM_001031615 222 Hs.87539 NM_000695 HPRD:03559 ALDH3B2 ALDH8 aldehyde dehydrogenase 3 family, member B2 protein-coding 13-PTNLD9-TUMOR_peak_17937 chr15 89524939 89525073 + 13.18019 NA Intergenic Intergenic -68343 NM_001114614 4240 Hs.3745 NM_005928 HPRD:03789 MFGE8 BA46|EDIL1|HMFG|HsT19888|MFG-E8|MFGM|OAcGD3S|SED1|SPAG10|hP47 milk fat globule-EGF factor 8 protein protein-coding 13-PTNLD9-TUMOR_peak_29366 chr2 191702191 191702348 + 13.18019 NA Intergenic Intergenic -43278 NM_001256310 2744 Hs.116448 NM_014905 HPRD:00700 GLS AAD20|GAC|GAM|GLS1|KGA glutaminase protein-coding 13-PTNLD9-TUMOR_peak_50036 chr8 8168105 8168602 + 13.18019 NA Intergenic Intergenic 70991 NM_001080826 157285 Hs.583863 NM_001080826 ENSG00000182319 SGK223 PRAGMIN homolog of rat pragma of Rnd2 protein-coding 13-PTNLD9-TUMOR_peak_35357 chr3 111762567 111762729 + 13.18019 NA intron (NR_026734, intron 2 of 16) intron (NR_026734, intron 2 of 16) 4183 NR_026734 344805 Hs.435490 NM_001042575 ENSG00000176040 TMPRSS7 - transmembrane protease, serine 7 protein-coding 13-PTNLD9-TUMOR_peak_33552 chr3 2496700 2496883 + 13.18019 NA intron (NM_175607, intron 3 of 24) intron (NM_175607, intron 3 of 24) 216278 NM_001206955 152330 Hs.298705 NM_175607 HPRD:16239 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 13-PTNLD9-TUMOR_peak_31400 chr20 48650597 48650787 + 13.18019 NA Intergenic AluJr|SINE|Alu 7474 NR_051976 100887755 Hs.195705 NR_051976 TRERNA1 LINC00651|treRNA translation regulatory long non-coding RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_38682 chr4 79490483 79490758 + 13.17352 NA intron (NM_005139, intron 2 of 12) intron (NM_005139, intron 2 of 12) 17878 NM_005139 306 Hs.480042 NM_005139 HPRD:00111 ANXA3 ANX3 annexin A3 protein-coding 13-PTNLD9-TUMOR_peak_51604 chr8 110657453 110657674 + 13.17352 NA promoter-TSS (NM_001099753) promoter-TSS (NM_001099753) 259 NM_001099752 55638 Hs.390738 NM_017786 HPRD:07902 SYBU GOLSYN|OCSYN|SNPHL syntabulin (syntaxin-interacting) protein-coding 13-PTNLD9-TUMOR_peak_23170 chr18 47716719 47716883 + 13.17352 NA intron (NM_001080467, intron 1 of 39) intron (NM_001080467, intron 1 of 39) 4650 NM_001080467 4645 Hs.720076 NM_001080467 ENSG00000167306 MYO5B - myosin VB protein-coding 13-PTNLD9-TUMOR_peak_47857 chr7 72661122 72661284 + 13.17352 NA Intergenic Intergenic 26529 NR_003186 654816 Hs.655201 NR_003186 ENSG00000182487 NCF1B NCF-1B|SH3PXD1B neutrophil cytosolic factor 1B pseudogene pseudo 13-PTNLD9-TUMOR_peak_44487 chr6 30815766 30816035 + 13.17306 NA Intergenic MER21C|LTR|ERVL -34490 NM_001297652 780 Hs.631988 NM_001954 HPRD:02678 DDR1 CAK|CD167|DDR|EDDR1|HGK2|MCK10|NEP|NTRK4|PTK3|PTK3A|RTK6|TRKE discoidin domain receptor tyrosine kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_36422 chr3 151984531 151984655 + 13.17306 NA non-coding (NR_027038, exon 2 of 2) non-coding (NR_027038, exon 2 of 2) -1236 NM_021038 4154 Hs.201858 NM_021038 HPRD:07355 MBNL1 EXP|EXP35|EXP40|EXP42|MBNL muscleblind-like splicing regulator 1 protein-coding 13-PTNLD9-TUMOR_peak_32841 chr22 21738166 21738373 + 13.17070 NA exon (NM_001128635, exon 1 of 1) exon (NM_001128635, exon 1 of 1) 229 NM_001128635 440804 Hs.568257 NM_001128635 ENSG00000196934 RIMBP3B RIM-BP3.2|RIM-BP3.B|RIMBP3.2 RIMS binding protein 3B protein-coding 13-PTNLD9-TUMOR_peak_35813 chr3 128267678 128267843 + 13.17070 NA Intergenic Intergenic 27169 NM_007354 23434 Hs.194283 NM_007354 HPRD:13607 C3orf27 GR6 chromosome 3 open reading frame 27 ncRNA 13-PTNLD9-TUMOR_peak_16099 chr14 68831138 68831419 + 13.17070 NA intron (NM_133510, intron 8 of 10) intron (NM_133510, intron 8 of 10) 429353 NM_004926 677 Hs.85155 NM_004926 HPRD:03041 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein-like 1 protein-coding 13-PTNLD9-TUMOR_peak_50572 chr8 33064731 33065010 + 13.16761 NA Intergenic Intergenic 265794 NM_032664 84750 Hs.458713 NM_032664 ENSG00000172728 FUT10 - fucosyltransferase 10 (alpha (1,3) fucosyltransferase) protein-coding 13-PTNLD9-TUMOR_peak_55491 chrX 3436993 3437275 + 13.16761 NA Intergenic Intergenic -140394 NR_046643 100873944 NR_046643 PRKX-AS1 - PRKX antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_2650 chr1 100909365 100909570 + 13.16761 NA intron (NM_003672, intron 7 of 15) intron (NM_003672, intron 7 of 15) 91444 NM_033312 8556 Hs.127411 NM_003672 HPRD:04614 CDC14A cdc14|hCDC14 cell division cycle 14A protein-coding 13-PTNLD9-TUMOR_peak_15450 chr14 31634995 31635277 + 13.16761 NA intron (NM_015382, intron 10 of 42) AluSz|SINE|Alu 41593 NM_015382 25831 Hs.708017 NM_015382 HPRD:17098 HECTD1 EULIR HECT domain containing E3 ubiquitin protein ligase 1 protein-coding 13-PTNLD9-TUMOR_peak_27136 chr2 67487984 67488374 + 13.16761 NA intron (NR_110564, intron 1 of 4) intron (NR_110564, intron 1 of 4) -45728 NR_038844 644838 Hs.145561 NR_038844 ENSG00000236780 LOC644838 - uncharacterized LOC644838 ncRNA 13-PTNLD9-TUMOR_peak_7329 chr10 50373642 50373805 + 13.16761 NA intron (NM_001288743, intron 4 of 6) intron (NM_001288743, intron 4 of 6) 22722 NM_001288743 170371 Hs.385493 NM_001010863 C10orf128 - chromosome 10 open reading frame 128 protein-coding 13-PTNLD9-TUMOR_peak_46293 chr6 150724667 150724985 + 13.16761 NA 3' UTR (NM_001164695, exon 6 of 6) 3' UTR (NM_001164695, exon 6 of 6) 34798 NM_001164695 389434 Hs.310225 NM_203395 HPRD:16668 IYD C6orf71|DEHAL1|TDH4|dJ422F24.1 iodotyrosine deiodinase protein-coding 13-PTNLD9-TUMOR_peak_34426 chr3 46014282 46014441 + 13.16761 NA intron (NM_024513, intron 6 of 17) intron (NM_024513, intron 6 of 17) 22955 NM_024513 79443 Hs.200227 NM_024513 HPRD:06215 FYCO1 CATC2|CTRCT18|RUFY3|ZFYVE7 FYVE and coiled-coil domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_12600 chr12 43150906 43151064 + 13.16761 NA Intergenic Intergenic -110685 NR_110042 101927058 Hs.434238 NR_110042 ENSG00000257510 LOC101927058 - uncharacterized LOC101927058 ncRNA 13-PTNLD9-TUMOR_peak_13940 chr12 116844474 116844629 + 13.16761 NA Intergenic Intergenic 21572 NR_039683 100616309 NR_039683 miRBase:MI0016824 MIR4472-2 - microRNA 4472-2 ncRNA 13-PTNLD9-TUMOR_peak_52653 chr9 3912884 3913064 + 13.16761 NA intron (NM_001042413, intron 6 of 10) intron (NM_001042413, intron 6 of 10) 14328 NR_026663 84850 Hs.676113 NM_032764 ENSG00000237009 GLIS3-AS1 C9orf70 GLIS3 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_34988 chr3 73414986 73415173 + 13.16761 NA Intergenic Intergenic -155394 NR_121660 101927296 Hs.662049 NR_121660 LOC101927296 - uncharacterized LOC101927296 ncRNA 13-PTNLD9-TUMOR_peak_17968 chr15 90836675 90836951 + 13.16761 NA Intergenic Intergenic -27822 NR_102428 10519 Hs.715556 NM_006384 CIB1 CIB|CIBP|KIP1|PRKDCIP|SIP2-28 calcium and integrin binding 1 (calmyrin) protein-coding 13-PTNLD9-TUMOR_peak_51553 chr8 107218528 107218824 + 13.15742 NA Intergenic Intergenic -63730 NM_018002 55074 Hs.127286 NM_018002 HPRD:16126 OXR1 TLDC3 oxidation resistance 1 protein-coding 13-PTNLD9-TUMOR_peak_26862 chr2 47496806 47497236 + 13.15742 NA intron (NR_110207, intron 1 of 2) intron (NR_110207, intron 1 of 2) 75192 NR_110207 101927043 Hs.515976 NR_110207 ENSG00000234690 LOC101927043 - uncharacterized LOC101927043 ncRNA 13-PTNLD9-TUMOR_peak_39333 chr4 129522579 129522798 + 13.15742 NA Intergenic Intergenic -208090 NM_199320 79960 Hs.12420 NM_024900 HPRD:10151 JADE1 PHF17 jade family PHD finger 1 protein-coding 13-PTNLD9-TUMOR_peak_51746 chr8 120428179 120428789 + 13.14266 NA promoter-TSS (NM_002514) promoter-TSS (NM_002514) -68 NM_002514 4856 Hs.235935 NM_002514 HPRD:01291 NOV CCN3|IBP-9|IGFBP-9|IGFBP9|NOVh nephroblastoma overexpressed protein-coding 13-PTNLD9-TUMOR_peak_47253 chr7 37768341 37768763 + 13.14266 NA Intergenic Intergenic -11444 NM_181791 353345 Hs.688230 NM_181791 HPRD:16423 GPR141 PGR13 G protein-coupled receptor 141 protein-coding 13-PTNLD9-TUMOR_peak_5001 chr1 201992165 201992540 + 13.14266 NA Intergenic Intergenic 12662 NM_001114309 1999 Hs.603657 NM_004433 HPRD:03722 ELF3 EPR-1|ERT|ESE-1|ESX E74-like factor 3 (ets domain transcription factor, epithelial-specific ) protein-coding 13-PTNLD9-TUMOR_peak_4414 chr1 172445387 172445620 + 13.14266 NA Intergenic Intergenic 23470 NM_001300760 92346 Hs.517991 NM_139240 HPRD:14291 C1orf105 - chromosome 1 open reading frame 105 protein-coding 13-PTNLD9-TUMOR_peak_52564 chr8 146257674 146257897 + 13.13873 NA Intergenic LTR14C|LTR|ERVK -20039 NM_023080 65265 Hs.169615 NM_023080 HPRD:07951 C8orf33 - chromosome 8 open reading frame 33 protein-coding 13-PTNLD9-TUMOR_peak_26499 chr2 30585393 30585639 + 13.13861 NA Intergenic Intergenic 16004 NR_122048 285043 Hs.429119 NR_122048 LOC285043 - uncharacterized LOC285043 ncRNA 13-PTNLD9-TUMOR_peak_48430 chr7 98399677 98399970 + 13.13861 NA Intergenic Intergenic 67850 NM_001134451 222865 Hs.270753 NM_152913 HPRD:13226 TMEM130 - transmembrane protein 130 protein-coding 13-PTNLD9-TUMOR_peak_5068 chr1 203247690 203248024 + 13.13861 NA Intergenic Intergenic -8423 NR_117097 100506775 Hs.443859 NR_117097 LINC01353 - long intergenic non-protein coding RNA 1353 ncRNA 13-PTNLD9-TUMOR_peak_40029 chr4 186488608 186488758 + 13.13691 NA Intergenic Intergenic -31971 NR_047562 27295 Hs.701364 NM_014476 PDLIM3 ALP PDZ and LIM domain 3 protein-coding 13-PTNLD9-TUMOR_peak_5767 chr1 229432262 229432485 + 13.13691 NA intron (NR_073545, intron 4 of 7) intron (NR_073545, intron 4 of 7) -7756 NM_006542 10638 Hs.296169 NM_006542 HPRD:11597 SPHAR - S-phase response (cyclin related) protein-coding 13-PTNLD9-TUMOR_peak_39761 chr4 159570200 159570501 + 13.13691 NA intron (NR_045582, intron 15 of 15) intron (NR_045582, intron 15 of 15) 22852 NM_001008393 201725 Hs.380920 NM_001008393 HPRD:17319 C4orf46 RCDG1 chromosome 4 open reading frame 46 protein-coding 13-PTNLD9-TUMOR_peak_18001 chr15 92509244 92509495 + 13.13691 NA intron (NM_013272, intron 2 of 9) intron (NM_013272, intron 2 of 9) 112431 NM_013272 28232 Hs.311187 NM_013272 HPRD:07502 SLCO3A1 OATP-D|OATP3A1|OATPD|SLC21A11 solute carrier organic anion transporter family, member 3A1 protein-coding 13-PTNLD9-TUMOR_peak_20750 chr17 26684423 26684731 + 13.13691 NA promoter-TSS (NM_152464) promoter-TSS (NM_152464) 35 NM_001290145 26073 Hs.241543 NM_015584 HPRD:17874 POLDIP2 PDIP38|POLD4|p38 polymerase (DNA-directed), delta interacting protein 2 protein-coding 13-PTNLD9-TUMOR_peak_31753 chr20 60730428 60730946 + 13.13691 NA intron (NM_198935, intron 1 of 10) intron (NM_198935, intron 1 of 10) 11865 NM_198935 26039 Hs.154429 NM_015558 HPRD:09398 SS18L1 CREST|LP2261 synovial sarcoma translocation gene on chromosome 18-like 1 protein-coding 13-PTNLD9-TUMOR_peak_37168 chr3 189010899 189011135 + 13.13691 NA intron (NM_198485, intron 4 of 5) intron (NM_198485, intron 4 of 5) -52634 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_9976 chr11 60897332 60897500 + 13.13691 NA TTS (NM_017966) TTS (NM_017966) 27486 NM_014207 921 Hs.58685 NM_014207 HPRD:01078 CD5 LEU1|T1 CD5 molecule protein-coding 13-PTNLD9-TUMOR_peak_17145 chr15 43182768 43183028 + 13.13691 NA intron (NM_173500, intron 1 of 14) MER21C|LTR|ERVL 30109 NM_173500 146057 Hs.646511 NM_173500 HPRD:10288 TTBK2 SCA11|TTBK tau tubulin kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_53613 chr9 74408719 74408957 + 13.13691 NA Intergenic Intergenic -25038 NM_001135820 23670 Hs.494146 NM_013390 HPRD:09317 TMEM2 - transmembrane protein 2 protein-coding 13-PTNLD9-TUMOR_peak_45898 chr6 111303055 111303401 + 13.13691 NA promoter-TSS (NM_032194) promoter-TSS (NM_032194) 8 NM_032194 84154 Hs.372265 NM_032194 RPF2 BXDC1|bA397G5.4 ribosome production factor 2 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_5002 chr1 201998400 201998635 + 13.13691 NA Intergenic L2c|LINE|L2 18827 NM_001114309 1999 Hs.603657 NM_004433 HPRD:03722 ELF3 EPR-1|ERT|ESE-1|ESX E74-like factor 3 (ets domain transcription factor, epithelial-specific ) protein-coding 13-PTNLD9-TUMOR_peak_14258 chr12 125550105 125550267 + 13.13691 NA exon (NM_023928, exon 1 of 18) exon (NM_023928, exon 1 of 18) 261 NM_023928 65985 Hs.656073 NM_023928 HPRD:12391 AACS ACSF1|SUR-5 acetoacetyl-CoA synthetase protein-coding 13-PTNLD9-TUMOR_peak_14689 chr13 44817435 44817647 + 13.13691 NA Intergenic Intergenic -47205 NR_107046 102465876 NR_107046 MIR8079 hsa-mir-8079 microRNA 8079 ncRNA 13-PTNLD9-TUMOR_peak_32329 chr21 40191877 40192083 + 13.13026 NA intron (NM_001256295, intron 9 of 10) intron (NM_001256295, intron 9 of 10) 14225 NM_005239 2114 Hs.644231 NM_005239 HPRD:01263 ETS2 ETS2IT1 v-ets avian erythroblastosis virus E26 oncogene homolog 2 protein-coding 13-PTNLD9-TUMOR_peak_50363 chr8 23748174 23748378 + 13.13026 NA Intergenic AmnSINE1|SINE|Deu -35956 NM_003155 6781 Hs.25590 NM_003155 HPRD:03115 STC1 STC stanniocalcin 1 protein-coding 13-PTNLD9-TUMOR_peak_30306 chr20 3026539 3026743 + 13.13026 NA promoter-TSS (NM_030811) promoter-TSS (NM_030811) -34 NM_030811 64949 Hs.18946 NM_030811 HPRD:17595 MRPS26 C20orf193|GI008|MRP-S13|MRP-S26|MRPS13|NY-BR-87|RPMS13|dJ534B8.3 mitochondrial ribosomal protein S26 protein-coding 13-PTNLD9-TUMOR_peak_54023 chr9 95860989 95861121 + 13.11868 NA intron (NM_032310, intron 1 of 5) intron (NM_032310, intron 1 of 5) 2605 NM_032310 84270 Hs.434213 NM_032310 HPRD:12985 C9orf89 BinCARD|bA370F5.1 chromosome 9 open reading frame 89 protein-coding 13-PTNLD9-TUMOR_peak_2130 chr1 68148386 68148787 + 13.11845 NA Intergenic Intergenic -2274 NM_001199741 1647 Hs.80409 NM_001924 HPRD:00528 GADD45A DDIT1|GADD45 growth arrest and DNA-damage-inducible, alpha protein-coding 13-PTNLD9-TUMOR_peak_6813 chr10 30101116 30101348 + 13.11538 NA Intergenic Intergenic -76502 NM_003174 6840 Hs.499209 NM_003174 HPRD:04992 SVIL - supervillin protein-coding 13-PTNLD9-TUMOR_peak_10827 chr11 86171121 86171401 + 13.11538 NA intron (NM_001014811, intron 7 of 13) intron (NM_001014811, intron 7 of 13) 85483 NM_021827 60494 Hs.144913 NM_021827 HPRD:08032 CCDC81 - coiled-coil domain containing 81 protein-coding 13-PTNLD9-TUMOR_peak_13979 chr12 118124991 118125177 + 13.11538 NA intron (NM_173598, intron 4 of 19) intron (NM_173598, intron 4 of 19) 280944 NM_173598 283455 Hs.375836 NM_173598 HPRD:13952 KSR2 - kinase suppressor of ras 2 protein-coding 13-PTNLD9-TUMOR_peak_31436 chr20 49032153 49032466 + 13.11538 NA Intergenic Intergenic -94430 NR_109950 101927586 Hs.637665 NR_109950 ENSG00000233077 LINC01271 - long intergenic non-protein coding RNA 1271 ncRNA 13-PTNLD9-TUMOR_peak_44894 chr6 38372723 38373053 + 13.10555 NA intron (NM_001172418, intron 5 of 10) intron (NM_001172418, intron 5 of 10) 190955 NM_001172418 114781 Hs.603858 NM_052893 HPRD:12543 BTBD9 dJ322I12.1 BTB (POZ) domain containing 9 protein-coding 13-PTNLD9-TUMOR_peak_56168 chrX 75392801 75393022 + 13.10555 NA 5' UTR (NM_016500, exon 1 of 6) 5' UTR (NM_016500, exon 1 of 6) 140 NM_016500 51260 Hs.370100 NM_016500 HPRD:06659 PBDC1 CXorf26 polysaccharide biosynthesis domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_6165 chr1 246207046 246207291 + 13.10555 NA intron (NM_022743, intron 5 of 11) intron (NM_022743, intron 5 of 11) 373546 NM_022743 64754 Hs.567571 NM_022743 HPRD:12297 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_13777 chr12 109458709 109458878 + 13.10555 NA 5' UTR (NM_018711, exon 1 of 15) 5' UTR (NM_018711, exon 1 of 15) 252 NM_018711 55530 Hs.4221 NM_018711 HPRD:13224 SVOP - SV2 related protein homolog (rat) protein-coding 13-PTNLD9-TUMOR_peak_23288 chr18 55936102 55936428 + 13.10555 NA intron (NM_001243960, intron 5 of 28) intron (NM_001243960, intron 5 of 28) 47511 NM_001144966 23327 Hs.185677 NM_015277 HPRD:05903 NEDD4L NEDD4-2|NEDD4.2|RSP5|hNEDD4-2 neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_40345 chr5 11904575 11904743 + 13.10555 NA promoter-TSS (NM_001332) promoter-TSS (NM_001332) -504 NM_001288717 1501 Hs.314543 NM_001332 HPRD:09181 CTNND2 GT24|NPRAP catenin (cadherin-associated protein), delta 2 protein-coding 13-PTNLD9-TUMOR_peak_36604 chr3 160881140 160881354 + 13.10555 NA Intergenic MLT1J|LTR|ERVL-MaLR -57852 NM_015938 51068 Hs.598836 NM_015938 HPRD:13026 NMD3 - NMD3 ribosome export adaptor protein-coding 13-PTNLD9-TUMOR_peak_32065 chr21 29706828 29706996 + 13.10555 NA Intergenic AluJr|SINE|Alu -204728 NR_026553 118421 Hs.438549 NR_026552 HPRD:10733 LINC00161 C21orf100|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 13-PTNLD9-TUMOR_peak_16976 chr15 33360362 33360605 + 13.10422 NA promoter-TSS (NM_001103184) promoter-TSS (NM_001103184) -250 NM_001103184 342184 Hs.657649 NM_198500 HPRD:07031 FMN1 FMN|LD formin 1 protein-coding 13-PTNLD9-TUMOR_peak_8712 chr11 183319 183447 + 13.10302 NA Intergenic L1MC3|LINE|L1 -9697 NM_001097610 653486 Hs.127059 NM_001097610 LOC653486 - secretoglobin, family 1C, member 1-like protein-coding 13-PTNLD9-TUMOR_peak_49173 chr7 133537850 133537989 + 13.10130 NA intron (NM_021807, intron 11 of 17) intron (NM_021807, intron 11 of 17) -28278 NR_120513 101928861 Hs.675747 NR_120513 LOC101928861 - uncharacterized LOC101928861 ncRNA 13-PTNLD9-TUMOR_peak_41747 chr5 112020536 112020858 + 13.09324 NA Intergenic Intergenic -2112 NR_104673 102467216 Hs.174158 NR_104673 LOC102467216 - uncharacterized LOC102467216 ncRNA 13-PTNLD9-TUMOR_peak_47402 chr7 46178765 46178950 + 13.09324 NA Intergenic L1MD|LINE|L1 -217986 NM_001013398 3486 Hs.450230 NM_000598 HPRD:00899 IGFBP3 BP-53|IBP3 insulin-like growth factor binding protein 3 protein-coding 13-PTNLD9-TUMOR_peak_4608 chr1 180499653 180499985 + 13.09324 NA Intergenic Intergenic -27797 NM_032360 84320 Hs.200051 NM_032360 HPRD:12416 ACBD6 - acyl-CoA binding domain containing 6 protein-coding 13-PTNLD9-TUMOR_peak_27756 chr2 97580191 97580413 + 13.09324 NA intron (NM_001122646, intron 12 of 16) L1MC5|LINE|L1 -4541 NR_110209 101927053 Hs.677537 NR_110209 LOC101927053 - uncharacterized LOC101927053 ncRNA 13-PTNLD9-TUMOR_peak_29179 chr2 177134336 177134463 + 13.09324 NA intron (NM_006554, intron 1 of 9) CpG 276 NM_006554 10651 Hs.470728 NM_006554 HPRD:09777 MTX2 - metaxin 2 protein-coding 13-PTNLD9-TUMOR_peak_51491 chr8 103819635 103819960 + 13.08899 NA Intergenic Intergenic 56600 NM_148174 51582 Hs.459106 NM_015878 HPRD:07443 AZIN1 OAZI|OAZIN|ODC1L antizyme inhibitor 1 protein-coding 13-PTNLD9-TUMOR_peak_54627 chr9 123106632 123106790 + 13.08143 NA Intergenic Intergenic -99383 NR_029604 406939 NR_029604 miRBase:MI0000262 MIR147A MIR147|MIRN147|hsa-mir-147a microRNA 147a ncRNA 13-PTNLD9-TUMOR_peak_30068 chr2 235330948 235331296 + 13.08143 NA Intergenic Intergenic 74571 NM_005737 10123 Hs.111554 NM_005737 HPRD:11988 ARL4C ARL7|LAK ADP-ribosylation factor-like 4C protein-coding 13-PTNLD9-TUMOR_peak_12475 chr12 32721289 32721427 + 13.08143 NA intron (NM_139241, intron 2 of 16) intron (NM_139241, intron 2 of 16) 66317 NM_139241 121512 Hs.117835 NM_139241 HPRD:16891 FGD4 CMT4H|FRABP|ZFYVE6 FYVE, RhoGEF and PH domain containing 4 protein-coding 13-PTNLD9-TUMOR_peak_44445 chr6 30364749 30364876 + 13.08143 NA Intergenic Intergenic 51906 NM_001199121 79897 Hs.183232 NM_024839 HPRD:15275 RPP21 C6orf135|CAT60 ribonuclease P/MRP 21kDa subunit protein-coding 13-PTNLD9-TUMOR_peak_47381 chr7 44907049 44907167 + 13.08143 NA Intergenic Intergenic 14291 NR_039801 100616393 NR_039801 miRBase:MI0017285 MIR4657 - microRNA 4657 ncRNA 13-PTNLD9-TUMOR_peak_33471 chr22 47169830 47170151 + 13.08143 NA 5' UTR (NM_001284305, exon 1 of 13) 5' UTR (NM_001284305, exon 1 of 13) 166 NM_001284305 25771 Hs.435044 NM_014346 HPRD:15474 TBC1D22A C22orf4|HSC79E021 TBC1 domain family, member 22A protein-coding 13-PTNLD9-TUMOR_peak_33106 chr22 30958468 30958722 + 13.08143 NA intron (NM_004861, intron 1 of 3) intron (NM_004861, intron 1 of 3) 2281 NM_004861 9514 Hs.17958 NM_004861 HPRD:03806 GAL3ST1 CST galactose-3-O-sulfotransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_7761 chr10 75639456 75639706 + 13.08143 NA Intergenic Intergenic -5232 NM_172169 818 Hs.523045 NM_001222 HPRD:03672 CAMK2G CAMK|CAMK-II|CAMKG calcium/calmodulin-dependent protein kinase II gamma protein-coding 13-PTNLD9-TUMOR_peak_38635 chr4 77555498 77555742 + 13.08143 NA intron (NM_020859, intron 2 of 10) Eulor5A|DNA?|DNA? 60899 NR_039654 100616299 NR_039654 MIR4450 - microRNA 4450 ncRNA 13-PTNLD9-TUMOR_peak_54194 chr9 101137471 101137753 + 13.08143 NA intron (NM_005458, intron 11 of 18) L2b|LINE|L2 -119609 NM_001267571 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family, member 2 protein-coding 13-PTNLD9-TUMOR_peak_37186 chr3 189646072 189646366 + 13.08015 NA Intergenic Intergenic 98508 NR_030642 100126340 NR_030642 MIR944 MIRN944|hsa-mir-944 microRNA 944 ncRNA 13-PTNLD9-TUMOR_peak_34125 chr3 26479262 26479453 + 13.08015 NA Intergenic MLT1G|LTR|ERVL-MaLR -184943 NM_052953 116135 Hs.517868 NM_052953 HPRD:14318 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 13-PTNLD9-TUMOR_peak_2996 chr1 116832949 116833169 + 13.08015 NA Intergenic Intergenic -82736 NM_000701 476 Hs.371889 NM_000701 HPRD:01662 ATP1A1 - ATPase, Na+/K+ transporting, alpha 1 polypeptide protein-coding 13-PTNLD9-TUMOR_peak_16497 chr14 95065541 95065893 + 13.08015 NA Intergenic Intergenic -12997 NM_001085 12 Hs.534293 NM_001085 HPRD:00120 SERPINA3 AACT|ACT|GIG25 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3 protein-coding 13-PTNLD9-TUMOR_peak_13916 chr12 113669533 113669755 + 13.08015 NA intron (NM_017901, intron 2 of 27) intron (NM_017901, intron 2 of 27) 10401 NM_001143819 53373 Hs.524763 NM_017901 HPRD:18217 TPCN1 TPC1 two pore segment channel 1 protein-coding 13-PTNLD9-TUMOR_peak_3840 chr1 155102085 155102267 + 13.07810 NA intron (NM_182685, intron 1 of 3) intron (NM_182685, intron 1 of 3) 1827 NM_182685 1942 Hs.516664 NM_004428 HPRD:01858 EFNA1 B61|ECKLG|EFL1|EPLG1|LERK-1|LERK1|TNFAIP4 ephrin-A1 protein-coding 13-PTNLD9-TUMOR_peak_12815 chr12 52596984 52597484 + 13.07608 NA Intergenic Intergenic 7405 NM_001242696 283403 Hs.667179 NM_001242696 C12orf80 - chromosome 12 open reading frame 80 protein-coding 13-PTNLD9-TUMOR_peak_42105 chr5 133702820 133703002 + 13.07386 NA promoter-TSS (NM_016508) promoter-TSS (NM_016508) -146 NM_001113575 51265 Hs.719926 NM_016508 ENSG00000006837 CDKL3 NKIAMRE cyclin-dependent kinase-like 3 protein-coding 13-PTNLD9-TUMOR_peak_27681 chr2 95700108 95700313 + 13.06590 NA intron (NM_022440, intron 1 of 1) intron (NM_022440, intron 1 of 1) 8810 NM_022438 4118 Hs.80395 NM_002371 HPRD:01789 MAL - mal, T-cell differentiation protein protein-coding 13-PTNLD9-TUMOR_peak_10110 chr11 63381748 63382109 + 13.06590 NA promoter-TSS (NM_007069) promoter-TSS (NM_007069) 13 NM_001128203 11145 Hs.502775 NM_007069 HPRD:13671 PLA2G16 AdPLA|H-REV107-1|HRASLS3|HREV107|HREV107-1|HREV107-3|HRSL3 phospholipase A2, group XVI protein-coding 13-PTNLD9-TUMOR_peak_29290 chr2 183989308 183989733 + 13.06590 NA intron (NR_109856, intron 1 of 7) intron (NR_109856, intron 1 of 7) 437 NM_001287585 129401 Hs.180591 NM_138285 HPRD:10486 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35kDa protein-coding 13-PTNLD9-TUMOR_peak_6378 chr10 5855745 5855936 + 13.06568 NA promoter-TSS (NM_001494) promoter-TSS (NM_001494) -328 NM_001494 2665 Hs.299055 NM_001494 HPRD:02863 GDI2 HEL-S-46e|RABGDIB GDP dissociation inhibitor 2 protein-coding 13-PTNLD9-TUMOR_peak_30931 chr20 35450671 35450870 + 13.06306 NA intron (NM_080627, intron 3 of 14) intron (NM_080627, intron 3 of 14) 37506 NM_199181 140710 Hs.460807 NM_080627 HPRD:11116 SOGA1 C20orf117|KIAA0889|SOGA suppressor of glucose, autophagy associated 1 protein-coding 13-PTNLD9-TUMOR_peak_11942 chr12 6198222 6198495 + 13.04991 NA intron (NM_000552, intron 6 of 51) intron (NM_000552, intron 6 of 51) 35478 NM_000552 7450 Hs.440848 NM_000552 HPRD:01906 VWF F8VWF|VWD von Willebrand factor protein-coding 13-PTNLD9-TUMOR_peak_33938 chr3 15419779 15419985 + 13.04769 NA Intergenic MER66C|LTR|ERV1 -36981 NM_001018009 9467 Hs.257761 NM_004844 HPRD:12030 SH3BP5 SAB|SH3BP-5 SH3-domain binding protein 5 (BTK-associated) protein-coding 13-PTNLD9-TUMOR_peak_43017 chr5 171870554 171870757 + 13.04769 NA intron (NM_001017995, intron 1 of 12) intron (NM_001017995, intron 1 of 12) 10872 NM_001017995 285590 Hs.285666 NM_001017995 HPRD:18591 SH3PXD2B FAD49|FTHS|HOFI|KIAA1295|TKS4|TSK4 SH3 and PX domains 2B protein-coding 13-PTNLD9-TUMOR_peak_54750 chr9 126979706 126979876 + 13.04472 NA Intergenic MIR|SINE|MIR -40094 NM_001166167 10783 Hs.197071 NM_014397 HPRD:05348 NEK6 SID6-1512 NIMA-related kinase 6 protein-coding 13-PTNLD9-TUMOR_peak_44866 chr6 37315460 37315857 + 13.04472 NA Intergenic LTR43|LTR|ERV1 -6090 NR_046399 9025 Hs.485278 NM_003958 HPRD:11521 RNF8 hRNF8 ring finger protein 8, E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_22928 chr18 33215290 33215481 + 13.04472 NA Intergenic Intergenic -19148 NM_020474 2589 Hs.514806 NM_020474 HPRD:03781 GALNT1 GALNAC-T1 polypeptide N-acetylgalactosaminyltransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_48864 chr7 116441195 116441383 + 13.04472 NA Intergenic Intergenic -61274 NM_006136 830 Hs.446123 NM_006136 CAPZA2 CAPPA2|CAPZ capping protein (actin filament) muscle Z-line, alpha 2 protein-coding 13-PTNLD9-TUMOR_peak_38629 chr4 77483464 77483627 + 13.04472 NA intron (NM_020859, intron 2 of 10) intron (NM_020859, intron 2 of 10) -11176 NR_039654 100616299 NR_039654 MIR4450 - microRNA 4450 ncRNA 13-PTNLD9-TUMOR_peak_32000 chr21 20205315 20205591 + 13.04472 NA Intergenic MLT2D|LTR|ERVL -73323 NR_109925 101927797 Hs.551743 NR_109925 LOC101927797 - uncharacterized LOC101927797 ncRNA 13-PTNLD9-TUMOR_peak_47982 chr7 74617484 74617855 + 13.04472 NA intron (NR_002206, intron 9 of 23).2 MER117|DNA|hAT-Charlie -29867 NR_003187 654817 Hs.647047 NR_003187 HPRD:01990 NCF1C SH3PXD1C neutrophil cytosolic factor 1C pseudogene pseudo 13-PTNLD9-TUMOR_peak_32267 chr21 38028551 38028732 + 13.04472 NA Intergenic Intergenic -43350 NM_005069 6493 Hs.146186 NM_005069 HPRD:02935 SIM2 HMC13F06|HMC29C01|SIM|bHLHe15 single-minded family bHLH transcription factor 2 protein-coding 13-PTNLD9-TUMOR_peak_10821 chr11 85894220 85894432 + 13.04472 NA Intergenic L2b|LINE|L2 -61480 NM_152991 8726 Hs.503510 NM_003797 HPRD:09343 EED HEED|WAIT1 embryonic ectoderm development protein-coding 13-PTNLD9-TUMOR_peak_44706 chr6 33712035 33712389 + 13.04472 NA intron (NM_001142883, intron 1 of 6) intron (NM_001142883, intron 1 of 6) 2550 NM_054111 117283 Hs.17253 NM_054111 HPRD:07381 IP6K3 IHPK3|INSP6K3 inositol hexakisphosphate kinase 3 protein-coding 13-PTNLD9-TUMOR_peak_22991 chr18 39993011 39993169 + 13.03574 NA intron (NR_046456, intron 5 of 7) intron (NR_046456, intron 5 of 7) 226457 NR_046457 284260 Hs.652819 NR_046174 ENSG00000267586 LINC00907 - long intergenic non-protein coding RNA 907 ncRNA 13-PTNLD9-TUMOR_peak_4152 chr1 161493962 161494462 + 13.03574 NA 5' UTR (NM_002155, exon 1 of 1) 5' UTR (NM_002155, exon 1 of 1) 176 NM_002155 3310 Hs.654614 NM_002155 HPRD:00775 HSPA6 - heat shock 70kDa protein 6 (HSP70B') protein-coding 13-PTNLD9-TUMOR_peak_2537 chr1 94547581 94547749 + 13.03190 NA intron (NM_000350, intron 7 of 49) intron (NM_000350, intron 7 of 49) 39040 NM_000350 24 Hs.416707 NM_000350 HPRD:03408 ABCA4 ABC10|ABCR|ARMD2|CORD3|FFM|RMP|RP19|STGD|STGD1 ATP-binding cassette, sub-family A (ABC1), member 4 protein-coding 13-PTNLD9-TUMOR_peak_54414 chr9 112813339 112813573 + 13.03190 NA intron (NM_001004065, intron 1 of 3) intron (NM_001004065, intron 1 of 3) 2578 NM_001198656 11217 Hs.591908 NM_001004065 ENSG00000241978 AKAP2 AKAP-2|AKAPKL|PRKA2 A kinase (PRKA) anchor protein 2 protein-coding 13-PTNLD9-TUMOR_peak_35082 chr3 87276199 87276527 + 13.03190 NA promoter-TSS (NM_014043) promoter-TSS (NM_014043) -50 NM_014043 25978 Hs.476930 NM_014043 HPRD:13174 CHMP2B ALS17|CHMP2.5|DMT1|VPS2-2|VPS2B charged multivesicular body protein 2B protein-coding 13-PTNLD9-TUMOR_peak_7149 chr10 43714161 43714501 + 13.03190 NA intron (NM_145313, intron 1 of 12) intron (NM_145313, intron 1 of 12) 10856 NM_001282862 221002 Hs.125293 NM_145313 HPRD:15211 RASGEF1A CG4853 RasGEF domain family, member 1A protein-coding 13-PTNLD9-TUMOR_peak_38094 chr4 23375898 23376282 + 13.03190 NA intron (NR_039674, intron 1 of 2) intron (NR_039674, intron 1 of 2) 88636 NR_039674 100616252 NR_039674 miRBase:MI0016815 MIR548AJ2 - microRNA 548aj-2 ncRNA 13-PTNLD9-TUMOR_peak_26716 chr2 43358200 43358408 + 13.03190 NA Intergenic Intergenic -91622 NR_110585 102723854 Hs.570165 NR_110585 LOC102723854 - uncharacterized LOC102723854 ncRNA 13-PTNLD9-TUMOR_peak_40406 chr5 15501672 15501810 + 13.03190 NA 5' UTR (NM_001278317, exon 1 of 4) 5' UTR (NM_001278317, exon 1 of 4) 194 NM_001278317 23194 Hs.433057 NM_012304 HPRD:05740 FBXL7 FBL6|FBL7 F-box and leucine-rich repeat protein 7 protein-coding 13-PTNLD9-TUMOR_peak_27211 chr2 70485087 70485593 + 13.03075 NA exon (NM_016297, exon 1 of 6) exon (NM_016297, exon 1 of 6) 109 NM_016297 51449 Hs.567502 NM_016297 HPRD:11422 PCYOX1 PCL1 prenylcysteine oxidase 1 protein-coding 13-PTNLD9-TUMOR_peak_47967 chr7 74307083 74307246 + 13.03075 NA promoter-TSS (NR_040584) promoter-TSS (NR_040584) 277 NR_027776 5383 Hs.292996 NM_174930 HPRD:17867 PMS2P5 PMS2L5|PMS7 postmeiotic segregation increased 2 pseudogene 5 pseudo 13-PTNLD9-TUMOR_peak_21185 chr17 43017690 43018007 + 13.03075 NA intron (NM_001264573, intron 1 of 14) intron (NM_001264573, intron 1 of 14) -5799 NR_106841 102466734 NR_106841 MIR6783 hsa-mir-6783 microRNA 6783 ncRNA 13-PTNLD9-TUMOR_peak_2406 chr1 89728403 89728664 + 13.03075 NA intron (NM_001134486, intron 8 of 10) intron (NM_001134486, intron 8 of 10) 10011 NM_052942 115362 Hs.513726 NM_052942 HPRD:13571 GBP5 GBP-5 guanylate binding protein 5 protein-coding 13-PTNLD9-TUMOR_peak_51798 chr8 123699361 123699588 + 13.03075 NA Intergenic L2a|LINE|L2 -94427 NM_014943 22882 Hs.377090 NM_014943 HPRD:16458 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 13-PTNLD9-TUMOR_peak_54419 chr9 112874339 112874524 + 13.03075 NA intron (NM_001004065, intron 1 of 3) intron (NM_001004065, intron 1 of 3) -13350 NM_001136562 11217 Hs.591908 NM_001004065 ENSG00000241978 AKAP2 AKAP-2|AKAPKL|PRKA2 A kinase (PRKA) anchor protein 2 protein-coding 13-PTNLD9-TUMOR_peak_43081 chr5 173227369 173227849 + 13.02987 NA Intergenic Intergenic -9664 NR_108028 101928154 Hs.366725 NR_108028 LINC01485 - long intergenic non-protein coding RNA 1485 ncRNA 13-PTNLD9-TUMOR_peak_9212 chr11 17289254 17289386 + 13.02773 NA Intergenic MLT1L|LTR|ERVL-MaLR -8966 NM_005013 4925 Hs.654599 NM_005013 HPRD:09726 NUCB2 HEL-S-109|NEFA nucleobindin 2 protein-coding 13-PTNLD9-TUMOR_peak_17775 chr15 81069602 81069895 + 13.02773 NA Intergenic Intergenic -1936 NM_001293298 57214 Hs.459088 NM_018689 HPRD:10519 CEMIP CCSP1|KIAA1199|TMEM2L cell migration inducing protein, hyaluronan binding protein-coding 13-PTNLD9-TUMOR_peak_25044 chr19 42007324 42007543 + 13.02773 NA promoter-TSS (NR_040109) promoter-TSS (NR_040109) -879 NR_040109 100505495 Hs.648878 NR_040109 ENSG00000267107 PCAT19 LINC01190 prostate cancer associated transcript 19 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_49550 chr7 148409781 148409966 + 13.02773 NA intron (NM_003592, intron 1 of 21) MIR|SINE|MIR 13940 NM_003592 8454 Hs.146806 NM_003592 HPRD:04389 CUL1 - cullin 1 protein-coding 13-PTNLD9-TUMOR_peak_26043 chr2 9391862 9392088 + 13.02773 NA intron (NM_003887, intron 1 of 27) intron (NM_003887, intron 1 of 27) 45081 NM_003887 8853 Hs.555902 NM_003887 HPRD:04820 ASAP2 AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 protein-coding 13-PTNLD9-TUMOR_peak_31272 chr20 45970212 45970408 + 13.02773 NA intron (NM_001281772, intron 4 of 23) L1MC3|LINE|L1 15323 NM_001281781 23613 Hs.446240 NM_012408 HPRD:10166 ZMYND8 PRKCBP1|PRO2893|RACK7 zinc finger, MYND-type containing 8 protein-coding 13-PTNLD9-TUMOR_peak_13041 chr12 57852990 57853173 + 13.02773 NA promoter-TSS (NM_001160045) promoter-TSS (NM_001160045) -837 NM_001160045 2735 Hs.632702 NM_005269 HPRD:01311 GLI1 GLI GLI family zinc finger 1 protein-coding 13-PTNLD9-TUMOR_peak_22461 chr18 3269289 3269529 + 13.02773 NA intron (NM_001144945, intron 1 of 3) L2|LINE|L2 6692 NM_001144945 103910 Hs.190086 NM_033546 HPRD:10095 MYL12B MLC-B|MRLC2 myosin, light chain 12B, regulatory protein-coding 13-PTNLD9-TUMOR_peak_49075 chr7 130406861 130406984 + 13.02773 NA Intergenic Intergenic 11938 NM_138693 136259 Hs.125240 NM_138693 HPRD:13919 KLF14 BTEB5 Kruppel-like factor 14 protein-coding 13-PTNLD9-TUMOR_peak_27468 chr2 86332625 86333099 + 13.02773 NA promoter-TSS (NM_017952) promoter-TSS (NM_017952) 416 NM_015425 25885 Hs.531818 NM_015425 HPRD:10161 POLR1A A190|RPA1|RPA194|RPO1-4|RPO14 polymerase (RNA) I polypeptide A, 194kDa protein-coding 13-PTNLD9-TUMOR_peak_5247 chr1 206235407 206235548 + 13.02773 NA Intergenic Intergenic 11194 NM_000707 553 Hs.1372 NM_000707 AVPR1B AVPR3 arginine vasopressin receptor 1B protein-coding 13-PTNLD9-TUMOR_peak_37342 chr3 194482123 194482390 + 13.02773 NA intron (NR_037891, intron 3 of 3) intron (NR_037891, intron 3 of 3) 53106 NR_037891 100507391 Hs.590099 NR_037891 ENSG00000237222 LOC100507391 - uncharacterized LOC100507391 ncRNA 13-PTNLD9-TUMOR_peak_25895 chr1_gl000192_random 500970 501151 + 13.02592 NA Intergenic Intergenic -32377 NR_120328 102724558 Hs.712738 NR_120328 LOC102724558 - uncharacterized LOC102724558 ncRNA 13-PTNLD9-TUMOR_peak_26181 chr2 15814070 15814271 + 13.00692 NA Intergenic Intergenic -16736 NR_110201 101926966 Hs.502835 NR_110201 ENSG00000231031 LOC101926966 - uncharacterized LOC101926966 ncRNA 13-PTNLD9-TUMOR_peak_43852 chr6 13413722 13413913 + 13.00278 NA intron (NM_018988, intron 1 of 1) intron (NM_018988, intron 1 of 1) -5448 NM_001242630 54438 Hs.484686 NM_018988 HPRD:13574 GFOD1 ADG-90|C6orf114 glucose-fructose oxidoreductase domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_281 chr1 8433682 8433902 + 13.00278 NA intron (NM_001042682, intron 2 of 12) intron (NM_001042682, intron 2 of 12) 49955 NM_001042682 473 Hs.463041 NM_012102 HPRD:05566 RERE ARG|ARP|ATN1L|DNB1 arginine-glutamic acid dipeptide (RE) repeats protein-coding 13-PTNLD9-TUMOR_peak_22036 chr17 73892494 73892704 + 13.00278 NA intron (NM_001256124, intron 1 of 4) CpG 485 NM_173547 201292 Hs.189823 NM_173547 HPRD:15569 TRIM65 4732463G12Rik tripartite motif containing 65 protein-coding 13-PTNLD9-TUMOR_peak_22249 chr17 79045638 79046402 + 13.00278 NA intron (NM_006340, intron 3 of 14) intron (NM_006340, intron 3 of 14) 37073 NM_006340 10458 Hs.128316 NM_006340 HPRD:05686 BAIAP2 BAP2|FLAF3|IRSP53 BAI1-associated protein 2 protein-coding 13-PTNLD9-TUMOR_peak_22000 chr17 73545408 73546207 + 13.00278 NA intron (NM_001015002, intron 2 of 9) intron (NM_001015002, intron 2 of 9) 24024 NM_001031803 3993 Hs.514477 NM_004524 HPRD:10041 LLGL2 HGL|LGL2 lethal giant larvae homolog 2 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_11917 chr12 5548011 5548370 + 13.00278 NA intron (NM_001102654, intron 1 of 1) intron (NM_001102654, intron 1 of 1) 6910 NM_001102654 4908 Hs.99171 NM_002527 HPRD:01219 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 13-PTNLD9-TUMOR_peak_32109 chr21 32654544 32655001 + 12.99071 NA intron (NM_003253, intron 3 of 28) intron (NM_003253, intron 3 of 28) -243977 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 13-PTNLD9-TUMOR_peak_24442 chr19 19145172 19145343 + 12.98929 NA promoter-TSS (NM_014884) promoter-TSS (NM_014884) 870 NM_033415 93436 Hs.77876 NM_033415 HPRD:12488 ARMC6 R30923_1 armadillo repeat containing 6 protein-coding 13-PTNLD9-TUMOR_peak_32907 chr22 23484204 23484428 + 12.98929 NA promoter-TSS (NM_014433) promoter-TSS (NM_014433) -75 NM_014433 27156 Hs.526920 NM_014433 HPRD:16136 RTDR1 - rhabdoid tumor deletion region gene 1 protein-coding 13-PTNLD9-TUMOR_peak_243 chr1 7612531 7612749 + 12.98929 NA intron (NM_015215, intron 6 of 22) intron (NM_015215, intron 6 of 22) -218689 NM_004781 9341 Hs.66708 NM_004781 HPRD:04711 VAMP3 CEB vesicle-associated membrane protein 3 protein-coding 13-PTNLD9-TUMOR_peak_13055 chr12 58165842 58166093 + 12.98929 NA promoter-TSS (NM_023033) promoter-TSS (NM_023033) -53 NM_023033 4234 Hs.42957 NM_005371 HPRD:06834 METTL1 C12orf1|TRM8|TRMT8|YDL201w methyltransferase like 1 protein-coding 13-PTNLD9-TUMOR_peak_3841 chr1 155102371 155102577 + 12.98684 NA intron (NM_182685, intron 1 of 3) intron (NM_182685, intron 1 of 3) 2125 NM_182685 1942 Hs.516664 NM_004428 HPRD:01858 EFNA1 B61|ECKLG|EFL1|EPLG1|LERK-1|LERK1|TNFAIP4 ephrin-A1 protein-coding 13-PTNLD9-TUMOR_peak_27216 chr2 70584900 70585189 + 12.98467 NA Intergenic Intergenic -55824 NM_032822 84908 Hs.516077 NM_032822 HPRD:07866 FAM136A - family with sequence similarity 136, member A protein-coding 13-PTNLD9-TUMOR_peak_56347 chrX 109984556 109984719 + 12.98467 NA intron (NM_001143981, intron 4 of 11) intron (NM_001143981, intron 4 of 11) 54439 NM_145234 91851 Hs.496587 NM_145234 HPRD:02285 CHRDL1 CHL|MGC1|MGCN|NRLN1|VOPT|dA141H5.1 chordin-like 1 protein-coding 13-PTNLD9-TUMOR_peak_7766 chr10 75692150 75692360 + 12.98467 NA Intergenic Intergenic -9720 NM_001001791 414236 Hs.585453 NM_001001791 HPRD:16580 C10orf55 bA417O11.3 chromosome 10 open reading frame 55 protein-coding 13-PTNLD9-TUMOR_peak_46552 chr6 168489000 168489244 + 12.98467 NA Intergenic Intergenic -6885 NR_110312 79981 Hs.266746 NM_024919 HPRD:10997 FRMD1 bA164L23.1 FERM domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_22970 chr18 37205021 37205157 + 12.98467 NA intron (NR_024391, intron 2 of 3) intron (NR_024391, intron 2 of 3) -51596 NR_049847 100847025 NR_049847 miRBase:MI0019139 MIR5583-1 - microRNA 5583-1 ncRNA 13-PTNLD9-TUMOR_peak_24664 chr19 32508939 32509353 + 12.98467 NA Intergenic Intergenic -7622 NR_110674 100996665 Hs.443685 NR_110673 ENSG00000267779 CTC-360P9.3 - uncharacterized LOC100996665 ncRNA 13-PTNLD9-TUMOR_peak_26021 chr2 8738559 8738687 + 12.98467 NA Intergenic Intergenic -14701 NR_110257 101929567 Hs.634706 NR_110257 ENSG00000236008 LOC101929567 - uncharacterized LOC101929567 ncRNA 13-PTNLD9-TUMOR_peak_7886 chr10 82220599 82220895 + 12.98467 NA intron (NM_030927, intron 1 of 8) intron (NM_030927, intron 1 of 8) 6709 NM_001128309 81619 Hs.718943 NM_030927 HPRD:18196 TSPAN14 DC-TM4F2|TM4SF14 tetraspanin 14 protein-coding 13-PTNLD9-TUMOR_peak_52985 chr9 31542527 31542749 + 12.98467 NA Intergenic Intergenic -841963 NM_002197 48 Hs.567229 NM_002197 HPRD:00013 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1, soluble protein-coding 13-PTNLD9-TUMOR_peak_54348 chr9 110456348 110456521 + 12.98467 NA Intergenic Intergenic -204387 NM_004235 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel-like factor 4 (gut) protein-coding 13-PTNLD9-TUMOR_peak_43414 chr6 1313994 1314175 + 12.98258 NA exon (NM_033260, exon 1 of 1) exon (NM_033260, exon 1 of 1) 1409 NM_033260 94234 Hs.591352 NM_033260 HPRD:17015 FOXQ1 HFH1 forkhead box Q1 protein-coding 13-PTNLD9-TUMOR_peak_38212 chr4 39972453 39972799 + 12.98203 NA intron (NM_001100400, intron 2 of 15) AluJb|SINE|Alu 6950 NM_001100400 23244 Hs.331431 NM_015200 HPRD:11537 PDS5A SCC-112|SCC112 PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_32346 chr21 40419977 40420334 + 12.98203 NA Intergenic Intergenic -70455 NR_109962 101928435 Hs.385528 NR_109962 ENSG00000232837 LOC101928435 - uncharacterized LOC101928435 ncRNA 13-PTNLD9-TUMOR_peak_29999 chr2 232276606 232276940 + 12.98203 NA Intergenic CpG 16438 NM_145236 93010 Hs.299329 NM_145236 HPRD:12512 B3GNT7 beta3GnT7 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7 protein-coding 13-PTNLD9-TUMOR_peak_45906 chr6 111873491 111873867 + 12.98203 NA intron (NR_034109, intron 1 of 1) intron (NR_034109, intron 1 of 1) 14884 NM_001164283 10758 Hs.561514 NM_147200 HPRD:06129 TRAF3IP2 ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13 TRAF3 interacting protein 2 protein-coding 13-PTNLD9-TUMOR_peak_25167 chr19 46320488 46320664 + 12.98203 NA intron (NM_004819, intron 23 of 26) intron (NM_004819, intron 23 of 26) -1971 NM_030785 81492 Hs.146544 NM_030785 HPRD:09611 RSPH6A RSHL1|RSP4|RSP6|RSPH4B radial spoke head 6 homolog A (Chlamydomonas) protein-coding 13-PTNLD9-TUMOR_peak_40601 chr5 35479336 35479515 + 12.98203 NA Intergenic Intergenic -138564 NM_144722 79925 Hs.298863 NM_024867 HPRD:11181 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 13-PTNLD9-TUMOR_peak_34560 chr3 49720659 49721049 + 12.97985 NA TTS (NM_001640) TTS (NM_001640) 5342 NM_020998 4485 Hs.349110 NM_020998 HPRD:00798 MST1 D3F15S2|DNF15S2|HGFL|MSP|NF15S2 macrophage stimulating 1 (hepatocyte growth factor-like) protein-coding 13-PTNLD9-TUMOR_peak_47842 chr7 72300663 72300840 + 12.97542 NA intron (NR_024109, intron 1 of 2) intron (NR_024109, intron 1 of 2) 799 NR_024109 155370 Hs.585053 NR_001588 ENSG00000225648 SBDSP1 SBDSP Shwachman-Bodian-Diamond syndrome pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_41627 chr5 100515863 100516004 + 12.97330 NA Intergenic L1PA2|LINE|L1 -276944 NM_175052 7903 Hs.308628 NM_005668 HPRD:03970 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 13-PTNLD9-TUMOR_peak_51416 chr8 101819411 101819605 + 12.97330 NA Intergenic Intergenic -85193 NM_002568 26986 Hs.387804 NM_002568 HPRD:05247 PABPC1 PAB1|PABP|PABP1|PABPC2|PABPL1 poly(A) binding protein, cytoplasmic 1 protein-coding 13-PTNLD9-TUMOR_peak_33595 chr3 4958269 4958465 + 12.97330 NA Intergenic L1HS|LINE|L1 18457 NR_037903 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_11339 chr11 117151804 117152336 + 12.97330 NA exon (NM_207343, exon 9 of 15) exon (NM_207343, exon 9 of 15) -9992 NR_037803 100379571 Hs.736305 NR_037803 BACE1-AS BACE1-AS1|BACE1AS|FJ573250|NCRNA00177 BACE1 antisense RNA ncRNA 13-PTNLD9-TUMOR_peak_28962 chr2 165577178 165577371 + 12.97330 NA intron (NM_001278460, intron 7 of 13) intron (NM_001278460, intron 7 of 13) -32987 NR_033309 100337591 Hs.664357 NR_033309 SNORA70F U70F small nucleolar RNA, H/ACA box 70F snoRNA 13-PTNLD9-TUMOR_peak_38009 chr4 13486235 13486479 + 12.97330 NA promoter-TSS (NM_001159601) promoter-TSS (NM_001159601) -368 NM_001159601 9364 Hs.656060 NM_004249 HPRD:06699 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_13580 chr12 101254294 101254896 + 12.97330 NA intron (NM_001286615, intron 1 of 27) Tigger3b|DNA|TcMar-Tigger -40829 NM_001286616 121601 Hs.58785 NM_178826 HPRD:15527 ANO4 TMEM16D anoctamin 4 protein-coding 13-PTNLD9-TUMOR_peak_45861 chr6 109071716 109072341 + 12.97330 NA promoter-TSS (NR_033376) promoter-TSS (NR_033376) -829 NR_033376 387111 Hs.520310 NR_033376 ENSG00000203801 LINC00222 C6orf181|NCRNA00222|dJ354J5.2 long intergenic non-protein coding RNA 222 ncRNA 13-PTNLD9-TUMOR_peak_56680 chrX 153029495 153029704 + 12.97330 NA promoter-TSS (NM_001163257) promoter-TSS (NM_001163257) -52 NM_005393 5365 Hs.632833 NM_005393 HPRD:02198 PLXNB3 PLEXB3|PLEXR|PLXN6 plexin B3 protein-coding 13-PTNLD9-TUMOR_peak_29124 chr2 174723103 174723363 + 12.97330 NA Intergenic Intergenic 105714 NM_001017371 6670 Hs.531587 NM_003111 HPRD:03483 SP3 SPR2 Sp3 transcription factor protein-coding 13-PTNLD9-TUMOR_peak_10484 chr11 70245880 70246147 + 12.96994 NA intron (NM_138565, intron 1 of 16) intron (NM_138565, intron 1 of 16) 1401 NM_138565 2017 Hs.596164 NM_005231 HPRD:01268 CTTN EMS1 cortactin protein-coding 13-PTNLD9-TUMOR_peak_10221 chr11 65256697 65257082 + 12.96412 NA Intergenic Intergenic -8344 NR_002819 378938 Hs.621695 NR_002819 ENSG00000251562 MALAT1 HCN|LINC00047|MALAT-1|NCRNA00047|NEAT2|PRO2853|mascRNA metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_37975 chr4 10056208 10056563 + 12.95854 NA Intergenic Intergenic -14513 NM_001001290 56606 Hs.656895 NM_020041 HPRD:05848 SLC2A9 GLUT9|GLUTX|UAQTL2|URATv1 solute carrier family 2 (facilitated glucose transporter), member 9 protein-coding 13-PTNLD9-TUMOR_peak_27337 chr2 75833333 75833633 + 12.95854 NA Intergenic Intergenic -36635 NM_032181 84141 Hs.302346 NM_032181 HPRD:07827 EVA1A FAM176A|TMEM166 eva-1 homolog A (C. elegans) protein-coding 13-PTNLD9-TUMOR_peak_54884 chr9 131902316 131902508 + 12.95842 NA intron (NM_001271832, intron 7 of 8) intron (NM_001271832, intron 7 of 8) 28445 NM_001193397 5524 Hs.400740 NM_021131 HPRD:02858 PPP2R4 PP2A|PR53|PTPA protein phosphatase 2A activator, regulatory subunit 4 protein-coding 13-PTNLD9-TUMOR_peak_33082 chr22 30592240 30592566 + 12.95842 NA Intergenic Intergenic 50437 NM_001257135 3976 Hs.2250 NM_002309 HPRD:08869 LIF CDF|DIA|HILDA|MLPLI leukemia inhibitory factor protein-coding 13-PTNLD9-TUMOR_peak_18677 chr16 19176504 19176694 + 12.95842 NA Intergenic LTR32|LTR|ERVL -3039 NM_016524 51760 Hs.258326 NM_016524 SYT17 - synaptotagmin XVII protein-coding 13-PTNLD9-TUMOR_peak_52063 chr8 131008938 131009188 + 12.95842 NA intron (NR_046361, intron 1 of 13) intron (NR_046361, intron 1 of 13) 11636 NR_049826 100847051 NR_049826 miRBase:MI0018173 MIR5194 - microRNA 5194 ncRNA 13-PTNLD9-TUMOR_peak_23898 chr19 9731768 9731968 + 12.95842 NA promoter-TSS (NM_152289) promoter-TSS (NM_152289) 48 NM_152289 93134 Hs.720081 NM_152289 HPRD:15843 ZNF561 - zinc finger protein 561 protein-coding 13-PTNLD9-TUMOR_peak_37027 chr3 185304275 185304459 + 12.95169 NA intron (NM_021627, intron 1 of 16) CpG 336 NM_021627 59343 Hs.401388 NM_021627 SENP2 AXAM2|SMT3IP2 SUMO1/sentrin/SMT3 specific peptidase 2 protein-coding 13-PTNLD9-TUMOR_peak_7631 chr10 72015595 72016029 + 12.95131 NA intron (NM_022146, intron 3 of 3) intron (NM_022146, intron 3 of 3) -22622 NM_021129 5464 Hs.437403 NM_021129 HPRD:01527 PPA1 HEL-S-66p|IOPPP|PP|PP1|SID6-8061 pyrophosphatase (inorganic) 1 protein-coding 13-PTNLD9-TUMOR_peak_21592 chr17 55967814 55968122 + 12.95131 NA intron (NM_001271875, intron 1 of 10) intron (NM_001271875, intron 1 of 10) 12782 NM_001292025 404093 Hs.46679 NM_001271875 HPRD:13098 CUEDC1 - CUE domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_14034 chr12 120700094 120700260 + 12.95131 NA intron (NM_001243756, intron 1 of 10) intron (NM_001243756, intron 1 of 10) 3397 NM_002859 5829 Hs.446336 NM_002859 ENSG00000089159 PXN - paxillin protein-coding 13-PTNLD9-TUMOR_peak_2506 chr1 94146354 94146632 + 12.95131 NA intron (NM_001261408, intron 3 of 13) CpG 433 NM_001261409 8412 Hs.36958 NM_003567 HPRD:05268 BCAR3 NSP2|SH2D3B breast cancer anti-estrogen resistance 3 protein-coding 13-PTNLD9-TUMOR_peak_13788 chr12 109900286 109900541 + 12.95131 NA intron (NM_031954, intron 2 of 6) MER102b|DNA|hAT-Charlie 14742 NM_031954 83892 Hs.524731 NM_031954 HPRD:13762 KCTD10 BTBD28|ULRO61|hBACURD3 potassium channel tetramerization domain containing 10 protein-coding 13-PTNLD9-TUMOR_peak_16106 chr14 68943281 68943473 + 12.95131 NA intron (NM_133509, intron 10 of 10) intron (NM_133509, intron 10 of 10) 317254 NM_004926 677 Hs.85155 NM_004926 HPRD:03041 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein-like 1 protein-coding 13-PTNLD9-TUMOR_peak_48761 chr7 106358730 106358958 + 12.95018 NA Intergenic Intergenic -57210 NM_175884 168455 Hs.29692 NM_175884 HPRD:08202 CCDC71L C7orf74 coiled-coil domain containing 71-like protein-coding 13-PTNLD9-TUMOR_peak_54183 chr9 100955404 100955649 + 12.95018 NA promoter-TSS (NM_052820) promoter-TSS (NM_052820) -570 NM_052820 7464 Hs.113094 NM_003389 HPRD:03695 CORO2A CLIPINB|IR10|WDR2 coronin, actin binding protein, 2A protein-coding 13-PTNLD9-TUMOR_peak_50681 chr8 40030392 40030642 + 12.95018 NA Intergenic Intergenic 19530 NM_020130 56892 Hs.591849 NM_020130 HPRD:09650 C8orf4 TC-1|TC1 chromosome 8 open reading frame 4 protein-coding 13-PTNLD9-TUMOR_peak_15223 chr14 20107953 20108232 + 12.94137 NA Intergenic Intergenic 74399 NM_001197287 79334 Hs.554706 NM_001197287 OR11H2 C14orf15|OR11H2P|OR11H8P olfactory receptor, family 11, subfamily H, member 2 protein-coding 13-PTNLD9-TUMOR_peak_16117 chr14 69017088 69017270 + 12.93846 NA intron (NM_133509, intron 10 of 10) MamRep434|DNA|TcMar-Tigger 243452 NM_004926 677 Hs.85155 NM_004926 HPRD:03041 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein-like 1 protein-coding 13-PTNLD9-TUMOR_peak_10226 chr11 65275881 65276046 + 12.93846 NA Intergenic AluY|SINE|Alu -6845 NR_049839 100847035 NR_049839 MIR548AR - microRNA 548ar ncRNA 13-PTNLD9-TUMOR_peak_27991 chr2 110565428 110565559 + 12.93654 NA intron (NM_001037866, intron 5 of 19) L2|LINE|L2 13527 NM_005054 84220 Hs.469630 NM_005054 HPRD:04128 RGPD5 BS-63|BS63|HEL161|RGP5 RANBP2-like and GRIP domain containing 5 protein-coding 13-PTNLD9-TUMOR_peak_30128 chr2 238969296 238969731 + 12.93280 NA promoter-TSS (NM_016510) promoter-TSS (NM_016510) -52 NM_016510 51540 Hs.731909 NM_016510 HPRD:15303 SCLY SCL|hSCL selenocysteine lyase protein-coding 13-PTNLD9-TUMOR_peak_44308 chr6 27473394 27473677 + 12.93280 NA Intergenic Intergenic -32638 NM_007149 7738 Hs.158174 NM_007149 HPRD:03785 ZNF184 - zinc finger protein 184 protein-coding 13-PTNLD9-TUMOR_peak_3994 chr1 157648590 157648767 + 12.93280 NA intron (NM_052939, intron 14 of 14) intron (NM_052939, intron 14 of 14) 21969 NM_052939 115352 Hs.292449 NM_052939 HPRD:07352 FCRL3 CD307c|FCRH3|IFGP3|IRTA3|SPAP2 Fc receptor-like 3 protein-coding 13-PTNLD9-TUMOR_peak_23768 chr19 6087908 6088273 + 12.93280 NA intron (NM_000635, intron 1 of 17) intron (NM_000635, intron 1 of 17) 22574 NM_000635 5990 Hs.465709 NM_000635 HPRD:00824 RFX2 - regulatory factor X, 2 (influences HLA class II expression) protein-coding 13-PTNLD9-TUMOR_peak_25498 chr19 51568164 51568391 + 12.93280 NA promoter-TSS (NM_015596) promoter-TSS (NM_015596) 90 NM_015596 26085 Hs.165296 NM_015596 KLK13 KLK-L4|KLKL4 kallikrein-related peptidase 13 protein-coding 13-PTNLD9-TUMOR_peak_48321 chr7 92672847 92673289 + 12.93280 NA Intergenic Intergenic 74268 NM_001193307 54809 Hs.65641 NM_017654 HPRD:11531 SAMD9 C7orf5|DRIF1|NFTC|OEF1|OEF2 sterile alpha motif domain containing 9 protein-coding 13-PTNLD9-TUMOR_peak_39114 chr4 114327778 114328161 + 12.93280 NA Intergenic Intergenic 254531 NR_107049 102465878 NR_107049 MIR8082 hsa-mir-8082 microRNA 8082 ncRNA 13-PTNLD9-TUMOR_peak_51314 chr8 95132239 95132528 + 12.93280 NA Intergenic MER52A|LTR|ERV1 88432 NM_004063 1015 Hs.591853 NM_004063 HPRD:04312 CDH17 CDH16|HPT-1|HPT1 cadherin 17, LI cadherin (liver-intestine) protein-coding 13-PTNLD9-TUMOR_peak_2186 chr1 71217629 71217814 + 12.92446 NA Intergenic MER11D|LTR|ERVK -294468 NR_038420 100132618 Hs.720513 NR_038420 ZRANB2-AS1 - ZRANB2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_23420 chr18 67910448 67910571 + 12.92446 NA Intergenic Intergenic -37547 NM_173630 25914 Hs.654809 NM_173630 HPRD:11525 RTTN - rotatin protein-coding 13-PTNLD9-TUMOR_peak_50920 chr8 52580433 52580632 + 12.92446 NA intron (NM_144651, intron 1 of 22) intron (NM_144651, intron 1 of 22) 141473 NM_144651 137902 Hs.444882 NM_144651 HPRD:08693 PXDNL PMR1|PRM1|VPO2 peroxidasin homolog (Drosophila)-like protein-coding 13-PTNLD9-TUMOR_peak_39279 chr4 124939998 124940392 + 12.92446 NA Intergenic Intergenic 244776 NR_027106 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 13-PTNLD9-TUMOR_peak_45519 chr6 74652409 74652627 + 12.92446 NA Intergenic ERVL-E-int|LTR|ERVL -126649 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 13-PTNLD9-TUMOR_peak_27170 chr2 69391594 69391757 + 12.92446 NA intron (NM_053034, intron 13 of 14) L2c|LINE|L2 60861 NR_036073 100423030 NR_036073 MIR3126 - microRNA 3126 ncRNA 13-PTNLD9-TUMOR_peak_33282 chr22 39436495 39436860 + 12.92446 NA promoter-TSS (NM_145298) promoter-TSS (NM_145298) 4 NM_001006666 200316 Hs.659809 NM_145298 APOBEC3F A3F|ARP8|BK150C2.4.MRNA|KA6 apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F protein-coding 13-PTNLD9-TUMOR_peak_55534 chrX 11777568 11777723 + 12.92446 NA promoter-TSS (NM_006800) promoter-TSS (NM_006800) -90 NM_006800 10943 Hs.655288 NM_006800 HPRD:05344 MSL3 MSL3L1 male-specific lethal 3 homolog (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_38953 chr4 100731325 100731475 + 12.92446 NA Intergenic AluJb|SINE|Alu -6581 NM_014395 27071 Hs.436271 NM_014395 HPRD:05773 DAPP1 BAM32 dual adaptor of phosphotyrosine and 3-phosphoinositides protein-coding 13-PTNLD9-TUMOR_peak_54682 chr9 124603124 124603348 + 12.92446 NA intron (NM_001139442, intron 8 of 8) intron (NM_001139442, intron 8 of 8) 98172 NM_138709 153090 Hs.522378 NM_032552 HPRD:09903 DAB2IP AF9Q34|AIP-1|AIP1|DIP1/2 DAB2 interacting protein protein-coding 13-PTNLD9-TUMOR_peak_7188 chr10 45422768 45422922 + 12.92446 NA intron (NR_033842, intron 1 of 7) L3|LINE|CR1 16081 NM_001123376 643236 Hs.292788 NM_001123376 TMEM72 C10orf127|KSP37|bA285G1.3 transmembrane protein 72 protein-coding 13-PTNLD9-TUMOR_peak_15520 chr14 34589890 34590071 + 12.92446 NA Intergenic LTR16E1|LTR|ERVL -169696 NM_022073 112399 Hs.135507 NM_022073 HPRD:06972 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia-inducible factor 3 protein-coding 13-PTNLD9-TUMOR_peak_33121 chr22 31503635 31503873 + 12.92446 NA promoter-TSS (NM_080430) promoter-TSS (NM_080430) -203 NM_080430 140606 Hs.55940 NM_080430 HPRD:15320 SELM SEPM selenoprotein M protein-coding 13-PTNLD9-TUMOR_peak_13139 chr12 64372405 64372530 + 12.92446 NA intron (NM_020762, intron 1 of 21) L1MB8|LINE|L1 133926 NM_020762 57522 Hs.210751 NM_020762 HPRD:09406 SRGAP1 ARHGAP13 SLIT-ROBO Rho GTPase activating protein 1 protein-coding 13-PTNLD9-TUMOR_peak_32963 chr22 24907323 24907529 + 12.91938 NA intron (NM_016327, intron 4 of 9) L1MB7|LINE|L1 16175 NM_016327 51733 Hs.731656 NM_016327 HPRD:09451 UPB1 BUP1 ureidopropionase, beta protein-coding 13-PTNLD9-TUMOR_peak_20257 chr17 2415124 2415320 + 12.91938 NA promoter-TSS (NM_024086) promoter-TSS (NM_024086) -22 NM_024086 79066 Hs.632237 NM_024086 HPRD:14556 METTL16 METT10D methyltransferase like 16 protein-coding 13-PTNLD9-TUMOR_peak_54262 chr9 104211460 104211825 + 12.91938 NA Intergenic CpG -13580 NM_000035 229 Hs.530274 NM_000035 HPRD:01972 ALDOB ALDB|ALDO2 aldolase B, fructose-bisphosphate protein-coding 13-PTNLD9-TUMOR_peak_37764 chr4 6034658 6034869 + 12.91938 NA intron (NM_001099433, intron 19 of 20) intron (NM_001099433, intron 19 of 20) -109708 NR_039608 100616201 NR_039608 miRBase:MI0016749 MIR378D1 - microRNA 378d-1 ncRNA 13-PTNLD9-TUMOR_peak_26707 chr2 43249048 43249209 + 12.91938 NA Intergenic Intergenic 17554 NR_110585 102723854 Hs.570165 NR_110585 LOC102723854 - uncharacterized LOC102723854 ncRNA 13-PTNLD9-TUMOR_peak_8736 chr11 518641 518975 + 12.91382 NA Intergenic CpG -11525 NM_203387 6050 Hs.530687 NM_002939 HPRD:01412 RNH1 RAI|RNH ribonuclease/angiogenin inhibitor 1 protein-coding 13-PTNLD9-TUMOR_peak_40300 chr5 10366787 10367263 + 12.91382 NA intron (NM_001270661, intron 1 of 22) LTR3B_|LTR|ERVK 13274 NM_005885 10299 Hs.432862 NM_005885 HPRD:11095 MARCH6 DOA10|MARCH-VI|RNF176|TEB4 membrane-associated ring finger (C3HC4) 6, E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_49192 chr7 134304820 134305030 + 12.91382 NA Intergenic Intergenic -26606 NM_001724 669 Hs.198365 NM_001724 HPRD:01961 BPGM DPGM 2,3-bisphosphoglycerate mutase protein-coding 13-PTNLD9-TUMOR_peak_34293 chr3 39234912 39235151 + 12.91382 NA promoter-TSS (NM_001198621) promoter-TSS (NM_001198621) -946 NM_001198621 165904 Hs.447868 NM_194293 HPRD:16727 XIRP1 CMYA1|Xin xin actin-binding repeat containing 1 protein-coding 13-PTNLD9-TUMOR_peak_17987 chr15 91497997 91498170 + 12.91382 NA promoter-TSS (NM_033544) promoter-TSS (NM_033544) -23 NM_001017919 91433 Hs.655895 NM_033544 HPRD:18706 RCCD1 - RCC1 domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_701 chr1 24446685 24447146 + 12.91382 NA 3' UTR (NM_021258, exon 7 of 7) 3' UTR (NM_021258, exon 7 of 7) -8250 NM_152372 127294 Hs.523413 NM_152372 HPRD:08200 MYOM3 - myomesin 3 protein-coding 13-PTNLD9-TUMOR_peak_51030 chr8 61564249 61564421 + 12.91382 NA Intergenic CpG -26989 NM_017780 55636 Hs.20395 NM_017780 HPRD:10595 CHD7 CRG|HH5|IS3|KAL5 chromodomain helicase DNA binding protein 7 protein-coding 13-PTNLD9-TUMOR_peak_45648 chr6 86168024 86168242 + 12.91382 NA intron (NM_002526, intron 1 of 8) intron (NM_002526, intron 1 of 8) 8831 NM_002526 4907 Hs.153952 NM_002526 HPRD:00552 NT5E CALJA|CD73|E5NT|NT|NT5|NTE|eN|eNT 5'-nucleotidase, ecto (CD73) protein-coding 13-PTNLD9-TUMOR_peak_13801 chr12 110278576 110278780 + 12.91382 NA Intergenic Intergenic -7466 NM_021625 59341 Hs.506713 NM_021625 HPRD:05667 TRPV4 CMT2C|HMSN2C|OTRPC4|SMAL|SPSMA|SSQTL1|TRP12|VRL2|VROAC transient receptor potential cation channel, subfamily V, member 4 protein-coding 13-PTNLD9-TUMOR_peak_7667 chr10 72977951 72978316 + 12.90923 NA promoter-TSS (NR_038453) promoter-TSS (NR_038453) -148 NR_038453 728978 Hs.646725 NR_038453 ENSG00000237512 UNC5B-AS1 - UNC5B antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_24288 chr19 16692535 16692687 + 12.90808 NA intron (NM_004831, intron 1 of 2) intron (NM_004831, intron 1 of 2) -9418 NM_024881 79939 Hs.620596 NM_024881 HPRD:15373 SLC35E1 - solute carrier family 35, member E1 protein-coding 13-PTNLD9-TUMOR_peak_3651 chr1 151918938 151919105 + 12.90091 NA Intergenic Intergenic -36660 NM_053055 117145 Hs.164070 NM_053055 THEM4 CTMP thioesterase superfamily member 4 protein-coding 13-PTNLD9-TUMOR_peak_20049 chr16 87904140 87904590 + 12.90084 NA Intergenic Intergenic -1265 NM_003486 8140 Hs.513797 NM_003486 HPRD:02552 SLC7A5 4F2LC|CD98|D16S469E|E16|LAT1|MPE16|hLAT1 solute carrier family 7 (amino acid transporter light chain, L system), member 5 protein-coding 13-PTNLD9-TUMOR_peak_29864 chr2 220139381 220139598 + 12.88804 NA Intergenic Intergenic -4551 NM_001039550 3300 Hs.77768 NM_006736 HPRD:07249 DNAJB2 DSMA5|HSJ-1|HSJ1|HSPF3 DnaJ (Hsp40) homolog, subfamily B, member 2 protein-coding 13-PTNLD9-TUMOR_peak_37153 chr3 188550974 188551358 + 12.88417 NA intron (NM_001167671, intron 8 of 10) intron (NM_001167671, intron 8 of 10) 114262 NR_046873 100874043 Hs.616287 NR_046873 TPRG1-AS1 - TPRG1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_43231 chr5 177517990 177518237 + 12.88417 NA Intergenic L1MEg|LINE|L1 -22443 NM_015111 23138 Hs.101761 NM_015111 ENSG00000145911 N4BP3 LZTS4 NEDD4 binding protein 3 protein-coding 13-PTNLD9-TUMOR_peak_12401 chr12 28343680 28343883 + 12.88417 NA Intergenic CpG -66352 NM_018318 55297 Hs.653125 NM_018318 HPRD:16905 CCDC91 p56 coiled-coil domain containing 91 protein-coding 13-PTNLD9-TUMOR_peak_28357 chr2 127643830 127644302 + 12.88417 NA Intergenic CpG 220837 NM_139343 274 Hs.193163 NM_004305 HPRD:03150 BIN1 AMPH2|AMPHL|SH3P9 bridging integrator 1 protein-coding 13-PTNLD9-TUMOR_peak_27303 chr2 74633155 74633535 + 12.88417 NA Intergenic LTR43|LTR|ERV1 11499 NM_001145054 388963 Hs.445377 NM_001145054 ENSG00000159239 C2orf81 hCG40743 chromosome 2 open reading frame 81 protein-coding 13-PTNLD9-TUMOR_peak_52040 chr8 129913076 129913261 + 12.88417 NA Intergenic Intergenic -336243 NR_121673 101927774 Hs.628730 NR_121672 ENSG00000254275 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 13-PTNLD9-TUMOR_peak_8532 chr10 125755021 125755331 + 12.87534 NA Intergenic Intergenic 96764 NM_015892 51363 Hs.287537 NM_014863 HPRD:12203 CHST15 BRAG|GALNAC4S-6ST carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15 protein-coding 13-PTNLD9-TUMOR_peak_28213 chr2 119636218 119636571 + 12.87534 NA Intergenic Intergenic -30635 NM_001426 2019 Hs.271977 NM_001426 HPRD:08835 EN1 - engrailed homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_4275 chr1 166459551 166459749 + 12.87534 NA Intergenic Intergenic -113503 NR_002925 116123 Hs.348539 NM_138784 HPRD:14011 FMO9P - flavin containing monooxygenase 9 pseudogene pseudo 13-PTNLD9-TUMOR_peak_43453 chr6 2478425 2478707 + 12.87534 NA Intergenic Intergenic 156732 NM_152554 154386 Hs.680574 NM_152554 C6orf195 bA145H9.2 chromosome 6 open reading frame 195 protein-coding 13-PTNLD9-TUMOR_peak_49310 chr7 138470575 138471043 + 12.87534 NA intron (NM_130840, intron 1 of 20) intron (NM_130840, intron 1 of 20) -11930 NM_001085429 155006 Hs.567729 NM_001085429 ENSG00000214128 TMEM213 - transmembrane protein 213 protein-coding 13-PTNLD9-TUMOR_peak_40622 chr5 36690327 36690676 + 12.86936 NA Intergenic CpG 84044 NM_001289940 6507 Hs.481918 NM_004172 HPRD:02523 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 (glial high affinity glutamate transporter), member 3 protein-coding 13-PTNLD9-TUMOR_peak_23023 chr18 42523417 42523836 + 12.86936 NA intron (NM_015559, intron 3 of 5) intron (NM_015559, intron 3 of 5) 26505 NR_036203 100422829 NR_036203 miRBase:MI0015848 MIR4319 - microRNA 4319 ncRNA 13-PTNLD9-TUMOR_peak_2749 chr1 109756956 109757276 + 12.86936 NA intron (NM_006513, intron 1 of 10) intron (NM_006513, intron 1 of 10) 601 NM_006513 6301 Hs.531176 NM_006513 HPRD:09605 SARS SERRS|SERS seryl-tRNA synthetase protein-coding 13-PTNLD9-TUMOR_peak_37930 chr4 9075153 9075281 + 12.86936 NA Intergenic HERVS71-int|LTR|ERV1 123740 NM_001040071 650293 Hs.535167 NM_001040071 LOC650293 - seven transmembrane helix receptor protein-coding 13-PTNLD9-TUMOR_peak_10055 chr11 62168339 62168482 + 12.86936 NA Intergenic Intergenic -18097 NM_003357 7356 Hs.523732 NM_003357 HPRD:01884 SCGB1A1 CC10|CC16|CCPBP|CCSP|UGB|UP-1|UP1 secretoglobin, family 1A, member 1 (uteroglobin) protein-coding 13-PTNLD9-TUMOR_peak_15388 chr14 24766103 24766273 + 12.86828 NA intron (NM_138452, intron 2 of 8) intron (NM_138452, intron 2 of 8) 2478 NM_138452 115817 Hs.348350 NM_138452 HPRD:09914 DHRS1 SDR19C1 dehydrogenase/reductase (SDR family) member 1 protein-coding 13-PTNLD9-TUMOR_peak_44480 chr6 30749591 30749880 + 12.86828 NA Intergenic Intergenic -37408 NM_003897 8870 Hs.76095 NM_003897 HPRD:04295 IER3 DIF-2|DIF2|GLY96|IEX-1|IEX-1L|IEX1|PRG1 immediate early response 3 protein-coding 13-PTNLD9-TUMOR_peak_47073 chr7 23719646 23719866 + 12.86828 NA promoter-TSS (NM_001127364) promoter-TSS (NM_001127364) 23 NM_001300932 340277 Hs.592178 NM_199136 HPRD:14706 FAM221A C7orf46 family with sequence similarity 221, member A protein-coding 13-PTNLD9-TUMOR_peak_16005 chr14 64363024 64363349 + 12.86617 NA intron (NM_182914, intron 1 of 115) L4|LINE|RTE 43503 NM_182914 23224 Hs.745014 NM_015180 HPRD:09763 SYNE2 EDMD5|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing, nuclear envelope 2 protein-coding 13-PTNLD9-TUMOR_peak_35572 chr3 122671390 122671521 + 12.86617 NA intron (NM_001256348, intron 1 of 21) MIR|SINE|MIR 23526 NM_001256347 54437 Hs.210870 NM_018987 HPRD:15322 SEMA5B SEMAG|SemG sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B protein-coding 13-PTNLD9-TUMOR_peak_19729 chr16 71879700 71879842 + 12.86617 NA promoter-TSS (NM_001137675) promoter-TSS (NM_001137675) -123 NM_001137675 342371 Hs.743239 NM_001137675 ENSG00000224470 ATXN1L BOAT|BOAT1 ataxin 1-like protein-coding 13-PTNLD9-TUMOR_peak_43432 chr6 1637362 1637474 + 12.86617 NA intron (NM_001500, intron 9 of 10) intron (NM_001500, intron 9 of 10) 26737 NM_001453 2296 Hs.348883 NM_001453 HPRD:03054 FOXC1 ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3 forkhead box C1 protein-coding 13-PTNLD9-TUMOR_peak_46413 chr6 158478589 158478742 + 12.86617 NA intron (NM_003898, intron 6 of 26) LTR79|LTR|ERVL 40585 NM_001178088 8871 Hs.434494 NM_003898 HPRD:10259 SYNJ2 INPP5H synaptojanin 2 protein-coding 13-PTNLD9-TUMOR_peak_34037 chr3 21747361 21747588 + 12.86617 NA intron (NM_024697, intron 1 of 7) intron (NM_024697, intron 1 of 7) 45342 NM_024697 79750 Hs.21026 NM_024697 HPRD:07990 ZNF385D ZNF659 zinc finger protein 385D protein-coding 13-PTNLD9-TUMOR_peak_42799 chr5 157621616 157622018 + 12.86617 NA Intergenic Intergenic 214964 NR_109888 101927697 Hs.483960 NR_109888 LOC101927697 - uncharacterized LOC101927697 ncRNA 13-PTNLD9-TUMOR_peak_7887 chr10 82231520 82231735 + 12.86617 NA intron (NM_030927, intron 1 of 8) intron (NM_030927, intron 1 of 8) 17589 NM_001128309 81619 Hs.718943 NM_030927 HPRD:18196 TSPAN14 DC-TM4F2|TM4SF14 tetraspanin 14 protein-coding 13-PTNLD9-TUMOR_peak_2981 chr1 116257177 116257394 + 12.86617 NA intron (NM_001232, intron 8 of 10) intron (NM_001232, intron 8 of 10) 54141 NM_001232 845 Hs.57975 NM_001232 HPRD:00256 CASQ2 PDIB2 calsequestrin 2 (cardiac muscle) protein-coding 13-PTNLD9-TUMOR_peak_29158 chr2 175836677 175836838 + 12.86617 NA intron (NR_038133, intron 1 of 11) intron (NR_038133, intron 1 of 11) 33224 NM_001822 1123 Hs.380138 NM_001822 HPRD:00319 CHN1 ARHGAP2|CHN|DURS2|NC|RHOGAP2 chimerin 1 protein-coding 13-PTNLD9-TUMOR_peak_1278 chr1 40358962 40359147 + 12.86617 NA Intergenic MIRb|SINE|MIR 8633 NM_005376 4610 Hs.437922 NM_005376 HPRD:01279 MYCL LMYC|MYCL1|bHLHe38 v-myc avian myelocytomatosis viral oncogene lung carcinoma derived homolog protein-coding 13-PTNLD9-TUMOR_peak_24651 chr19 31631148 31631305 + 12.86617 NA Intergenic Intergenic 208964 NM_020856 57616 Hs.278436 NM_020856 HPRD:18351 TSHZ3 TSH3|ZNF537 teashirt zinc finger homeobox 3 protein-coding 13-PTNLD9-TUMOR_peak_36153 chr3 139835908 139836140 + 12.86617 NA intron (NM_022131, intron 1 of 16) intron (NM_022131, intron 1 of 16) 181997 NM_022131 64084 Hs.158529 NM_022131 CLSTN2 ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma calsyntenin 2 protein-coding 13-PTNLD9-TUMOR_peak_42152 chr5 134527147 134527367 + 12.86617 NA intron (NM_001277348, intron 3 of 5) CpG 56610 NR_037895 340073 Hs.434422 NR_037895 ENSG00000249647 C5orf66-AS2 - C5orf66 antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_22575 chr18 10132027 10132256 + 12.86586 NA Intergenic Intergenic 218186 NM_003574 9218 Hs.165195 NM_003574 HPRD:09299 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP (vesicle-associated membrane protein)-associated protein A, 33kDa protein-coding 13-PTNLD9-TUMOR_peak_30395 chr20 9898398 9898560 + 12.86586 NA Intergenic Intergenic -68502 NR_109861 101929371 Hs.619265 NR_109861 ENSG00000243961 LOC101929371 - uncharacterized LOC101929371 ncRNA 13-PTNLD9-TUMOR_peak_36737 chr3 171998282 171998456 + 12.86586 NA intron (NM_001135095, intron 6 of 25) intron (NM_001135095, intron 6 of 25) 167877 NM_198407 2693 Hs.130212 NM_004122 HPRD:03541 GHSR - growth hormone secretagogue receptor protein-coding 13-PTNLD9-TUMOR_peak_42084 chr5 133375365 133375537 + 12.86586 NA Intergenic Intergenic -34627 NM_003374 7416 Hs.519320 NM_003374 HPRD:05137 VDAC1 PORIN|VDAC-1 voltage-dependent anion channel 1 protein-coding 13-PTNLD9-TUMOR_peak_12411 chr12 29581727 29581914 + 12.86586 NA intron (NM_183378, intron 27 of 27) intron (NM_183378, intron 27 of 27) 39593 NR_073170 101055625 Hs.569158 NR_073170 ENSG00000257599 OVCH1-AS1 - OVCH1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_14834 chr13 67231376 67231599 + 12.86586 NA intron (NM_020403, intron 2 of 3) intron (NM_020403, intron 2 of 3) -167814 NR_046527 100874064 Hs.569284 NR_046527 ENSG00000228842 PCDH9-AS2 - PCDH9 antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_1874 chr1 55388610 55388747 + 12.86586 NA Intergenic Intergenic -35757 NM_014762 1718 Hs.498727 NM_014762 HPRD:05916 DHCR24 DCE|Nbla03646|SELADIN1|seladin-1 24-dehydrocholesterol reductase protein-coding 13-PTNLD9-TUMOR_peak_54407 chr9 112402574 112402765 + 12.86586 NA promoter-TSS (NM_001037293) promoter-TSS (NM_001037293) -399 NM_001037293 114299 Hs.591908 NM_053016 HPRD:17817 PALM2 AKAP2 paralemmin 2 protein-coding 13-PTNLD9-TUMOR_peak_36377 chr3 150066350 150066585 + 12.85927 NA Intergenic Intergenic -24933 NR_110187 101928022 Hs.555199 NR_110186 ENSG00000243550 LINC01214 - long intergenic non-protein coding RNA 1214 ncRNA 13-PTNLD9-TUMOR_peak_30228 chr2 243065804 243065922 + 12.85351 NA intron (NR_024437, intron 5 of 6) AluSz|SINE|Alu 35019 NR_024437 728323 Hs.471887 NR_024437 LOC728323 - uncharacterized LOC728323 ncRNA 13-PTNLD9-TUMOR_peak_39013 chr4 106394536 106394720 + 12.85351 NA intron (NM_176866, intron 1 of 7) CpG 599 NM_176866 27068 Hs.654957 NM_006903 HPRD:18494 PPA2 SID6-306 pyrophosphatase (inorganic) 2 protein-coding 13-PTNLD9-TUMOR_peak_35454 chr3 115507792 115508063 + 12.85143 NA Intergenic L2b|LINE|L2 165776 NM_001130064 2596 Hs.134974 NM_002045 HPRD:01198 GAP43 B-50|PP46 growth associated protein 43 protein-coding 13-PTNLD9-TUMOR_peak_46723 chr7 2673599 2673822 + 12.84988 NA intron (NM_025250, intron 1 of 13) intron (NM_025250, intron 1 of 13) 2107 NM_025250 80727 Hs.440899 NM_025250 HPRD:12333 TTYH3 - tweety family member 3 protein-coding 13-PTNLD9-TUMOR_peak_37141 chr3 188066448 188066684 + 12.83780 NA intron (NM_001167671, intron 2 of 10) intron (NM_001167671, intron 2 of 10) 123373 NM_001167671 4026 Hs.720220 NM_005578 HPRD:02828 LPP - LIM domain containing preferred translocation partner in lipoma protein-coding 13-PTNLD9-TUMOR_peak_448 chr1 12244288 12244479 + 12.83607 NA intron (NM_001066, intron 1 of 9) intron (NM_001066, intron 1 of 9) -7387 NR_039775 100616438 NR_039775 MIR4632 - microRNA 4632 ncRNA 13-PTNLD9-TUMOR_peak_40053 chr4 187606983 187607221 + 12.83607 NA intron (NM_005245, intron 2 of 26) intron (NM_005245, intron 2 of 26) 37885 NM_005245 2195 Hs.481371 NM_005245 HPRD:02986 FAT1 CDHF7|CDHR8|FAT|ME5|hFat1 FAT atypical cadherin 1 protein-coding 13-PTNLD9-TUMOR_peak_42927 chr5 168404934 168405463 + 12.83607 NA intron (NM_003062, intron 4 of 35) intron (NM_003062, intron 4 of 35) -35034 NR_109897 728095 Hs.145601 NR_109897 ENSG00000248222 CTB-174D11.1 - uncharacterized LOC728095 ncRNA 13-PTNLD9-TUMOR_peak_34259 chr3 37247653 37247832 + 12.83607 NA Intergenic HERVH-int|LTR|ERV1 -29891 NM_001134369 9209 Hs.740522 NM_006309 HPRD:10061 LRRFIP2 HUFI-2 leucine rich repeat (in FLII) interacting protein 2 protein-coding 13-PTNLD9-TUMOR_peak_17201 chr15 45112738 45112891 + 12.83607 NA Intergenic Intergenic 84254 NM_001301145 140691 Hs.745248 NM_080745 HPRD:11518 TRIM69 HSD-34|HSD34|RNF36|Trif tripartite motif containing 69 protein-coding 13-PTNLD9-TUMOR_peak_49446 chr7 142462726 142462890 + 12.82850 NA Intergenic Intergenic 5489 NM_002769 5644 Hs.449281 NM_002769 HPRD:02039 PRSS1 TRP1|TRY1|TRY4|TRYP1 protease, serine, 1 (trypsin 1) protein-coding 13-PTNLD9-TUMOR_peak_5190 chr1 205243377 205243744 + 12.82797 NA Intergenic Intergenic 18231 NM_001297613 9911 Hs.6360 NM_014858 HPRD:11040 TMCC2 HUCEP11 transmembrane and coiled-coil domain family 2 protein-coding 13-PTNLD9-TUMOR_peak_9352 chr11 26987109 26987259 + 12.82764 NA Intergenic L1PA2|LINE|L1 -28444 NM_203371 387758 Hs.712718 NM_203371 HPRD:17366 FIBIN - fin bud initiation factor homolog (zebrafish) protein-coding 13-PTNLD9-TUMOR_peak_20387 chr17 7255000 7255379 + 12.82764 NA promoter-TSS (NM_001002914) promoter-TSS (NM_001002914) -19 NM_001002914 147040 Hs.592112 NM_001002914 HPRD:13763 KCTD11 C17orf36|KCASH1|REN|REN/KCTD11 potassium channel tetramerization domain containing 11 protein-coding 13-PTNLD9-TUMOR_peak_23432 chr18 68101218 68101405 + 12.82764 NA Intergenic MLT1B|LTR|ERVL-MaLR -49484 NR_110764 101060542 Hs.586967 NR_110764 ENSG00000266278 LOC101060542 - uncharacterized LOC101060542 ncRNA 13-PTNLD9-TUMOR_peak_40019 chr4 186227155 186227492 + 12.82564 NA intron (NM_031953, intron 6 of 18) intron (NM_031953, intron 6 of 18) 72829 NM_018409 55805 Hs.558513 NM_018409 HPRD:10911 LRP2BP - LRP2 binding protein protein-coding 13-PTNLD9-TUMOR_peak_47094 chr7 25068227 25068525 + 12.82564 NA Intergenic Intergenic -48545 NM_015550 26031 Hs.520259 NM_015550 HPRD:09474 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein-like 3 protein-coding 13-PTNLD9-TUMOR_peak_6224 chr10 176200 176345 + 12.82564 NA Intergenic Intergenic -4133 NM_006624 10771 Hs.292265 NM_006624 HPRD:09830 ZMYND11 BRAM1|BS69 zinc finger, MYND-type containing 11 protein-coding 13-PTNLD9-TUMOR_peak_25883 chr1_gl000192_random 239657 239864 + 12.82564 NA intron (NR_103556, intron 17 of 45) LTR16A1|LTR|ERVL 167750 NR_103556 100288805 Hs.648712 NR_049745 HYDIN2 HYDINP1 HYDIN2, axonemal central pair apparatus protein (pseudogene) pseudo 13-PTNLD9-TUMOR_peak_26846 chr2 47257385 47257510 + 12.82084 NA intron (NM_001288955, intron 14 of 18) X7C_LINE|LINE|CR1 -88453 NM_001171511 90411 Hs.662152 NM_139279 HPRD:09693 MCFD2 F5F8D|F5F8D2|LMAN1IP|SDNSF multiple coagulation factor deficiency 2 protein-coding 13-PTNLD9-TUMOR_peak_37149 chr3 188400862 188401107 + 12.81835 NA intron (NM_001167671, intron 6 of 10) intron (NM_001167671, intron 6 of 10) -114530 NR_046623 100873917 Hs.674993 NR_046623 LPP-AS1 - LPP antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_11756 chr12 286003 286196 + 12.81835 NA 3' UTR (NM_001170738, exon 14 of 14) 3' UTR (NM_001170738, exon 14 of 14) -26712 NR_120475 101929384 Hs.569138 NR_120475 LOC101929384 - uncharacterized LOC101929384 ncRNA 13-PTNLD9-TUMOR_peak_43734 chr6 10403958 10404224 + 12.81835 NA intron (NM_001042425, intron 4 of 6) MIRb|SINE|MIR -8460 NR_033910 100130275 Hs.661431 NR_033910 TFAP2A-AS1 - TFAP2A antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_43753 chr6 10759509 10759803 + 12.81835 NA 3' UTR (NM_001286488, exon 6 of 6) 3' UTR (NM_001286488, exon 6 of 6) 11664 NR_104454 81853 Hs.95600 NM_030969 HPRD:15523 TMEM14B - transmembrane protein 14B protein-coding 13-PTNLD9-TUMOR_peak_10924 chr11 93575520 93575893 + 12.81289 NA intron (NM_001144871, intron 1 of 3) intron (NM_001144871, intron 1 of 3) 7962 NM_001144871 387804 Hs.512252 NM_001144871 VSTM5 C11orf90 V-set and transmembrane domain containing 5 protein-coding 13-PTNLD9-TUMOR_peak_44826 chr6 36702966 36703284 + 12.81289 NA Intergenic Intergenic 37497 NM_001257357 401258 Hs.485258 NM_207498 RAB44 RASD3|RASL13|dJ431A14.3 RAB44, member RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_36365 chr3 149796917 149797128 + 12.81289 NA Intergenic Intergenic 107956 NR_036538 646903 Hs.632559 NR_036538 LOC646903 - uncharacterized LOC646903 ncRNA 13-PTNLD9-TUMOR_peak_44637 chr6 32829015 32829179 + 12.81289 NA Intergenic L1MEf|LINE|L1 7159 NM_002800 5698 Hs.654585 NM_002800 HPRD:01514 PSMB9 LMP2|PSMB6i|RING12|beta1i proteasome (prosome, macropain) subunit, beta type, 9 protein-coding 13-PTNLD9-TUMOR_peak_35170 chr3 99262020 99262243 + 12.81289 NA Intergenic Intergenic -95309 NM_020351 1295 Hs.654548 NM_001850 HPRD:00372 COL8A1 C3orf7 collagen, type VIII, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_48195 chr7 84158755 84158950 + 12.81289 NA Intergenic Intergenic -2940 NR_110080 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 13-PTNLD9-TUMOR_peak_23202 chr18 48973785 48974153 + 12.81289 NA intron (NR_040074, intron 1 of 2) intron (NR_040074, intron 1 of 2) 55557 NR_040074 100287225 Hs.448920 NR_040074 ENSG00000227115 LOC100287225 - uncharacterized LOC100287225 ncRNA 13-PTNLD9-TUMOR_peak_48387 chr7 96975719 96976041 + 12.81289 NA Intergenic Intergenic 229975 NM_020186 57001 Hs.592269 NM_020186 HPRD:16471 ACN9 - ACN9 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_34022 chr3 19930724 19931034 + 12.81289 NA intron (NM_144715, intron 9 of 12) intron (NM_144715, intron 9 of 12) 44827 NM_144715 151651 Hs.733920 NM_144715 HPRD:08054 EFHB CFAP21 EF-hand domain family, member B protein-coding 13-PTNLD9-TUMOR_peak_33538 chr3 1128912 1129198 + 12.81289 NA Intergenic Intergenic -5287 NM_001289080 27255 Hs.387300 NM_014461 HPRD:06242 CNTN6 NB3 contactin 6 protein-coding 13-PTNLD9-TUMOR_peak_45624 chr6 84140762 84140979 + 12.81289 NA promoter-TSS (NM_002395) promoter-TSS (NM_002395) 68 NM_002395 4199 Hs.21160 NM_002395 HPRD:01102 ME1 HUMNDME|MES malic enzyme 1, NADP(+)-dependent, cytosolic protein-coding 13-PTNLD9-TUMOR_peak_50190 chr8 18992105 18992308 + 12.81289 NA Intergenic Intergenic 110826 NR_038919 100128993 Hs.697742 NR_038919 LOC100128993 - uncharacterized LOC100128993 ncRNA 13-PTNLD9-TUMOR_peak_20791 chr17 27992284 27992474 + 12.81289 NA intron (NM_001282129, intron 11 of 15) intron (NM_001282129, intron 11 of 15) -43938 NM_032854 84940 Hs.143046 NM_032854 HPRD:08607 CORO6 - coronin 6 protein-coding 13-PTNLD9-TUMOR_peak_34336 chr3 42103245 42103586 + 12.81289 NA Intergenic Intergenic -29331 NM_001042646 22906 Hs.535711 NM_014965 HPRD:09732 TRAK1 MILT1|OIP106 trafficking protein, kinesin binding 1 protein-coding 13-PTNLD9-TUMOR_peak_39272 chr4 124706726 124706991 + 12.80631 NA intron (NR_027106, intron 1 of 2) intron (NR_027106, intron 1 of 2) 11439 NR_027106 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 13-PTNLD9-TUMOR_peak_9686 chr11 46181325 46181565 + 12.80631 NA Intergenic Intergenic -12061 NR_120565 101928894 Hs.552679 NR_120565 ENSG00000255314 LOC101928894 - uncharacterized LOC101928894 ncRNA 13-PTNLD9-TUMOR_peak_2100 chr1 66708430 66708613 + 12.80631 NA intron (NM_001037340, intron 1 of 14) intron (NM_001037340, intron 1 of 14) -89270 NM_001037339 5142 Hs.198072 NM_002600 HPRD:02528 PDE4B DPDE4|PDEIVB phosphodiesterase 4B, cAMP-specific protein-coding 13-PTNLD9-TUMOR_peak_9602 chr11 42087858 42087992 + 12.80631 NA Intergenic LTR1|LTR|ERV1 187315 NR_038309 100507205 Hs.99310 NR_038309 LOC100507205 - uncharacterized LOC100507205 ncRNA 13-PTNLD9-TUMOR_peak_47293 chr7 41668643 41668855 + 12.80631 NA Intergenic Intergenic -64765 NR_027118 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_18780 chr16 23434878 23435000 + 12.80631 NA intron (NM_153603, intron 7 of 16) intron (NM_153603, intron 7 of 16) 29573 NM_153603 91949 Hs.185807 NM_153603 HPRD:07373 COG7 CDG2E component of oligomeric golgi complex 7 protein-coding 13-PTNLD9-TUMOR_peak_37592 chr4 1748029 1748395 + 12.80631 NA Intergenic Intergenic 24995 NM_006342 10460 Hs.104019 NM_006342 HPRD:05601 TACC3 ERIC-1|ERIC1 transforming, acidic coiled-coil containing protein 3 protein-coding 13-PTNLD9-TUMOR_peak_15266 chr14 21553232 21553409 + 12.80631 NA intron (NM_001278529, intron 18 of 23) intron (NM_001278529, intron 18 of 23) 13488 NM_016423 51222 Hs.250493 NM_016423 HPRD:05435 ZNF219 ZFP219 zinc finger protein 219 protein-coding 13-PTNLD9-TUMOR_peak_33115 chr22 31341775 31341968 + 12.80631 NA intron (NM_014941, intron 7 of 26) intron (NM_014941, intron 7 of 26) 22316 NM_014941 22880 Hs.555918 NM_014941 HPRD:11699 MORC2 ZCW3|ZCWCC1 MORC family CW-type zinc finger 2 protein-coding 13-PTNLD9-TUMOR_peak_27382 chr2 84128153 84128326 + 12.80631 NA Intergenic Tigger3b|DNA|TcMar-Tigger -389567 NR_003663 388965 Hs.664098 NM_001013648 HPRD:18390 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_7853 chr10 80926346 80926507 + 12.80631 NA intron (NM_020338, intron 4 of 24) intron (NM_020338, intron 4 of 24) 97634 NM_020338 57178 Hs.193118 NM_020338 HPRD:12115 ZMIZ1 MIZ|RAI17|TRAFIP10|ZIMP10|hZIMP10 zinc finger, MIZ-type containing 1 protein-coding 13-PTNLD9-TUMOR_peak_46830 chr7 6488101 6488297 + 12.80592 NA promoter-TSS (NM_139179) promoter-TSS (NM_139179) -556 NM_139179 221955 Hs.487498 NM_139179 HPRD:17324 DAGLB DAGLBETA|KCCR13L diacylglycerol lipase, beta protein-coding 13-PTNLD9-TUMOR_peak_49380 chr7 140227090 140227452 + 12.80592 NA exon (NM_015689, exon 13 of 18) exon (NM_015689, exon 13 of 18) -47902 NM_001291663 23608 Hs.744883 NM_013446 HPRD:09673 MKRN1 RNF61 makorin ring finger protein 1 protein-coding 13-PTNLD9-TUMOR_peak_49709 chr7 152038546 152038710 + 12.80064 NA intron (NM_170606, intron 2 of 58) MLT1I|LTR|ERVL-MaLR 94462 NM_170606 58508 Hs.647120 NM_021230 HPRD:06016 KMT2C HALR|MLL3 lysine (K)-specific methyltransferase 2C protein-coding 13-PTNLD9-TUMOR_peak_28030 chr2 111222997 111223168 + 12.80064 NA 3' UTR (NM_033514, exon 3 of 3).2 3' UTR (NM_033514, exon 3 of 3).2 7570 NR_027467 96626 Hs.535619 NM_033514 HPRD:17277 LIMS3 PINCH-3 LIM and senescent cell antigen-like domains 3 protein-coding 13-PTNLD9-TUMOR_peak_40379 chr5 14268424 14268598 + 12.79765 NA intron (NM_007118, intron 1 of 56) intron (NM_007118, intron 1 of 56) 124682 NM_007118 7204 Hs.130031 NM_007118 HPRD:03537 TRIO ARHGEF23|tgat trio Rho guanine nucleotide exchange factor protein-coding 13-PTNLD9-TUMOR_peak_35652 chr3 124705087 124705386 + 12.78786 NA intron (NM_020733, intron 14 of 16) intron (NM_020733, intron 14 of 16) -51641 NM_033049 56667 Hs.5940 NM_033049 HPRD:10101 MUC13 DRCC1|MUC-13 mucin 13, cell surface associated protein-coding 13-PTNLD9-TUMOR_peak_23062 chr18 43966849 43967026 + 12.78786 NA intron (NM_001256758, intron 1 of 5) intron (NM_001256758, intron 1 of 5) 52750 NM_001256758 494470 Hs.501114 NM_152470 ENSG00000141622 RNF165 ARKL2|RNF111L2 ring finger protein 165 protein-coding 13-PTNLD9-TUMOR_peak_13118 chr12 63105378 63105717 + 12.78786 NA intron (NM_020700, intron 6 of 9) intron (NM_020700, intron 6 of 9) 108081 NR_029661 406891 NR_029661 miRBase:MI0000434 MIRLET7I LET7I|MIRNLET7I|hsa-let-7i microRNA let-7i ncRNA 13-PTNLD9-TUMOR_peak_5153 chr1 204463592 204463948 + 12.78786 NA Intergenic CpG -4296 NM_002646 5287 Hs.497487 NM_002646 HPRD:04160 PIK3C2B C2-PI3K phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta protein-coding 13-PTNLD9-TUMOR_peak_35564 chr3 122417184 122417360 + 12.78786 NA intron (NM_017554, intron 5 of 16) intron (NM_017554, intron 5 of 16) 17600 NM_017554 54625 Hs.518203 NM_017554 HPRD:11421 PARP14 ARTD8|BAL2|PARP-14|pART8 poly (ADP-ribose) polymerase family, member 14 protein-coding 13-PTNLD9-TUMOR_peak_34062 chr3 23641778 23641941 + 12.78786 NA intron (NR_039621, intron 2 of 2) intron (NR_039621, intron 2 of 2) -205525 NM_182666 7324 Hs.164853 NM_003341 HPRD:04225 UBE2E1 UBCH6 ubiquitin-conjugating enzyme E2E 1 protein-coding 13-PTNLD9-TUMOR_peak_29223 chr2 179278321 179278475 + 12.78742 NA promoter-TSS (NR_110205) promoter-TSS (NR_110205) 12 NR_110205 101927027 Hs.715694 NR_110204 ENSG00000223960 LOC101927027 - uncharacterized LOC101927027 ncRNA 13-PTNLD9-TUMOR_peak_9889 chr11 57405199 57405328 + 12.78742 NA Intergenic Intergenic -3408 NR_029673 406919 NR_029673 miRBase:MI0000448 MIR130A MIRN130A|miRNA130A microRNA 130a ncRNA 13-PTNLD9-TUMOR_peak_26264 chr2 20435836 20436048 + 12.78742 NA Intergenic Intergenic -10748 NM_001006946 6382 Hs.224607 NM_002997 HPRD:01718 SDC1 CD138|SDC|SYND1|syndecan syndecan 1 protein-coding 13-PTNLD9-TUMOR_peak_47278 chr7 39773628 39773845 + 12.78366 NA intron (NR_026999, intron 1 of 11) LTR24|LTR|ERV1 569 NR_026999 349114 Hs.414183 NM_198284 LINC00265 NCRNA00265 long intergenic non-protein coding RNA 265 ncRNA 13-PTNLD9-TUMOR_peak_5852 chr1 233004955 233005220 + 12.78191 NA Intergenic Intergenic 64449 NM_019090 54627 Hs.160373 NM_019090 ENSG00000212916 MAP10 KIAA1383|MTR120 microtubule-associated protein 10 protein-coding 13-PTNLD9-TUMOR_peak_22638 chr18 12402911 12403048 + 12.78191 NA Intergenic Intergenic -4916 NM_001142405 10650 Hs.514718 NM_006553 HPRD:09981 SLMO1 C18orf43|HFL-EDDG1|PRELID3A slowmo homolog 1 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_13955 chr12 117293619 117293882 + 12.78191 NA Intergenic Intergenic 25482 NR_073189 8739 Hs.87247 NM_003806 HRK DP5|HARAKIRI harakiri, BCL2 interacting protein protein-coding 13-PTNLD9-TUMOR_peak_41796 chr5 114715718 114715887 + 12.78191 NA Intergenic Intergenic -83344 NM_001040440 153733 Hs.436121 NM_152549 HPRD:11346 CCDC112 MBC1 coiled-coil domain containing 112 protein-coding 13-PTNLD9-TUMOR_peak_49915 chr8 59436 59627 + 12.77772 NA Intergenic AluSq|SINE|Alu 57493 NM_001005504 441308 Hs.690459 NM_001005504 OR4F21 OR4F21P olfactory receptor, family 4, subfamily F, member 21 protein-coding 13-PTNLD9-TUMOR_peak_13065 chr12 58461450 58461699 + 12.76011 NA Intergenic ERVL-E-int|LTR|ERVL 126129 NM_033276 91419 Hs.61188 NM_033276 HPRD:17256 XRCC6BP1 KUB3 XRCC6 binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_46148 chr6 139139051 139139346 + 12.76011 NA intron (NM_001077706, intron 4 of 21) intron (NM_001077706, intron 4 of 21) 21950 NM_001195037 345930 Hs.660603 NM_001077706 ENSG00000203734 ECT2L ARHGEF32|C6orf91|FBXO49|LFDH|dJ509I19.2|dJ509I19.3|dJ509I19.5 epithelial cell transforming 2 like protein-coding 13-PTNLD9-TUMOR_peak_5303 chr1 207125602 207125774 + 12.76011 NA Intergenic Intergenic -5877 NM_002644 5284 Hs.497589 NM_002644 HPRD:01436 PIGR - polymeric immunoglobulin receptor protein-coding 13-PTNLD9-TUMOR_peak_17412 chr15 63189262 63189624 + 12.76011 NA Intergenic Intergenic 73287 NR_029709 406965 NR_029709 MIR190A MIR190|MIRN190|hsa-mir-190a|miR-190 microRNA 190a ncRNA 13-PTNLD9-TUMOR_peak_46211 chr6 145433886 145434276 + 12.76011 NA Intergenic Intergenic -621924 NR_038246 100507557 Hs.124537 NR_038244 ENSG00000235652 LOC100507557 - uncharacterized LOC100507557 ncRNA 13-PTNLD9-TUMOR_peak_41366 chr5 77623627 77623773 + 12.76011 NA Intergenic MER58A|DNA|hAT-Charlie -32627 NR_110885 9522 Hs.482587 NM_004866 HPRD:06072 SCAMP1 SCAMP|SCAMP37 secretory carrier membrane protein 1 protein-coding 13-PTNLD9-TUMOR_peak_43323 chr5 179751039 179751251 + 12.76011 NA intron (NM_005110, intron 9 of 18) intron (NM_005110, intron 9 of 18) 29170 NM_005110 9945 Hs.696497 NM_005110 HPRD:04842 GFPT2 GFAT2 glutamine-fructose-6-phosphate transaminase 2 protein-coding 13-PTNLD9-TUMOR_peak_34579 chr3 50158930 50159221 + 12.76011 NA Intergenic Intergenic -20654 NR_045388 100775107 Hs.439480 NR_045388 RBM5-AS1 LUST RBM5 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_2271 chr1 82136099 82136276 + 12.76011 NA Intergenic Intergenic -29268 NM_001297704 23266 Hs.24212 NM_012302 HPRD:06116 LPHN2 CIRL2|CL2|LEC1|LPHH1 latrophilin 2 protein-coding 13-PTNLD9-TUMOR_peak_23090 chr18 45471949 45472291 + 12.76011 NA Intergenic Intergenic -14603 NM_001003652 4087 Hs.12253 NM_005901 HPRD:03221 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding 13-PTNLD9-TUMOR_peak_44867 chr6 37321631 37321870 + 12.76011 NA promoter-TSS (NM_003958) promoter-TSS (NM_003958) 2 NM_183078 9025 Hs.485278 NM_003958 HPRD:11521 RNF8 hRNF8 ring finger protein 8, E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_54127 chr9 99637407 99637666 + 12.76011 NA Intergenic MIRb|SINE|MIR 6354 NR_038890 100132781 Hs.710921 NR_038890 LOC100132781 - cyclin Y-like 1 pseudogene pseudo 13-PTNLD9-TUMOR_peak_53111 chr9 35516598 35516737 + 12.74864 NA intron (NM_014806, intron 1 of 11) intron (NM_014806, intron 1 of 11) -21962 NM_001135999 9853 Hs.493796 NM_014806 HPRD:18009 RUSC2 Iporin RUN and SH3 domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_23265 chr18 55396584 55396818 + 12.74770 NA intron (NM_005603, intron 2 of 27) intron (NM_005603, intron 2 of 27) 73626 NM_005603 5205 Hs.216623 NM_005603 HPRD:03867 ATP8B1 ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1 ATPase, aminophospholipid transporter, class I, type 8B, member 1 protein-coding 13-PTNLD9-TUMOR_peak_55748 chrX 41331567 41331748 + 12.74770 NA intron (NM_022567, intron 1 of 1) intron (NM_022567, intron 1 of 1) 24944 NM_022567 60506 Hs.302019 NM_022567 HPRD:02232 NYX CLRP|CSNB1|CSNB1A|CSNB4|NBM1 nyctalopin protein-coding 13-PTNLD9-TUMOR_peak_26167 chr2 12753278 12753509 + 12.74770 NA Intergenic Intergenic -103605 NR_027303 28951 Hs.467751 NM_021643 HPRD:18224 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 13-PTNLD9-TUMOR_peak_18058 chr15 99270930 99271145 + 12.74770 NA intron (NM_001291858, intron 2 of 20) intron (NM_001291858, intron 2 of 20) -56618 NR_039864 100616432 NR_039864 MIR4714 - microRNA 4714 ncRNA 13-PTNLD9-TUMOR_peak_46145 chr6 138786233 138786505 + 12.74770 NA intron (NM_020464, intron 3 of 6) Tigger3c|DNA|TcMar-Tigger -29938 NR_036099 100423001 NR_036099 MIR3145 - microRNA 3145 ncRNA 13-PTNLD9-TUMOR_peak_50218 chr8 20002956 20003087 + 12.74770 NA 3' UTR (NM_001142324, exon 16 of 16) 3' UTR (NM_001142324, exon 16 of 16) 37696 NM_001142325 6570 Hs.158322 NM_003053 HPRD:01897 SLC18A1 CGAT|VAT1|VMAT1 solute carrier family 18 (vesicular monoamine transporter), member 1 protein-coding 13-PTNLD9-TUMOR_peak_33340 chr22 41799886 41800175 + 12.74770 NA Intergenic Intergenic 22097 NM_003216 7008 Hs.181159 NM_003216 HPRD:01783 TEF - thyrotrophic embryonic factor protein-coding 13-PTNLD9-TUMOR_peak_29577 chr2 203439420 203439606 + 12.74770 NA Intergenic Intergenic -60388 NM_173511 150864 Hs.471130 NM_173511 HPRD:12445 FAM117B ALS2CR13 family with sequence similarity 117, member B protein-coding 13-PTNLD9-TUMOR_peak_19925 chr16 84133265 84133459 + 12.74770 NA intron (NM_003791, intron 2 of 22) AluSx3|SINE|Alu 17186 NM_003791 8720 Hs.75890 NM_003791 HPRD:04522 MBTPS1 PCSK8|S1P|SKI-1 membrane-bound transcription factor peptidase, site 1 protein-coding 13-PTNLD9-TUMOR_peak_29169 chr2 176962348 176962552 + 12.74770 NA Intergenic CpG -2080 NM_021193 3238 Hs.450028 NM_021193 HPRD:00871 HOXD12 HOX4H homeobox D12 protein-coding 13-PTNLD9-TUMOR_peak_20590 chr17 18621996 18622223 + 12.74729 NA Intergenic Intergenic -3293 NM_001037330 147166 Hs.164324 NM_001037330 HPRD:18731 TRIM16L TRIM70 tripartite motif containing 16-like protein-coding 13-PTNLD9-TUMOR_peak_42112 chr5 133801621 133801774 + 12.74729 NA Intergenic CpG -30959 NR_105044 102546229 NR_105044 LOC102546229 - uncharacterized LOC102546229 ncRNA 13-PTNLD9-TUMOR_peak_52330 chr8 141796786 141796942 + 12.74729 NA intron (NM_153831, intron 14 of 31) intron (NM_153831, intron 14 of 31) -151218 NM_001164623 27161 Hs.743313 NM_012154 HPRD:06943 AGO2 EIF2C2|Q10 argonaute RISC catalytic component 2 protein-coding 13-PTNLD9-TUMOR_peak_46657 chr7 993263 993401 + 12.74729 NA intron (NM_001284308, intron 1 of 10) intron (NM_001284308, intron 1 of 10) 987 NM_006869 11033 Hs.602573 NM_006869 HPRD:09733 ADAP1 CENTA1|GCS1L|p42IP4 ArfGAP with dual PH domains 1 protein-coding 13-PTNLD9-TUMOR_peak_49429 chr7 142038582 142038789 + 12.74090 NA Intergenic Intergenic -66617 NR_036483 207147 Hs.604069 NR_036483 TRY2P - trypsinogen-like pseudogene pseudo 13-PTNLD9-TUMOR_peak_478 chr1 14631128 14631383 + 12.74066 NA Intergenic Intergenic -293958 NM_015209 23254 Hs.368823 NM_015209 HPRD:11122 KAZN KAZ kazrin, periplakin interacting protein protein-coding 13-PTNLD9-TUMOR_peak_21134 chr17 41656931 41657222 + 12.74066 NA Intergenic L2a|LINE|L2 -33276 NM_001079675 2118 Hs.434059 NM_001986 HPRD:02833 ETV4 E1A-F|E1AF|PEA3|PEAS3 ets variant 4 protein-coding 13-PTNLD9-TUMOR_peak_10423 chr11 68811827 68811962 + 12.74066 NA Intergenic Intergenic -4456 NM_139075 219931 Hs.131851 NM_139075 TPCN2 SHEP10|TPC2 two pore segment channel 2 protein-coding 13-PTNLD9-TUMOR_peak_26914 chr2 51180165 51180574 + 12.74066 NA intron (NM_004801, intron 2 of 21) MIRb|SINE|MIR 79305 NM_004801 9378 Hs.637685 NM_004801 HPRD:11858 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 13-PTNLD9-TUMOR_peak_13301 chr12 70381649 70381793 + 12.74066 NA Intergenic Intergenic 208989 NM_001024647 117177 Hs.258209 NM_022456 HPRD:10565 RAB3IP RABIN3 RAB3A interacting protein protein-coding 13-PTNLD9-TUMOR_peak_11975 chr12 6532835 6533131 + 12.74066 NA Intergenic Intergenic -21068 NM_001242 939 Hs.355307 NM_001242 HPRD:01723 CD27 S152|S152. LPFS2|T14|TNFRSF7|Tp55 CD27 molecule protein-coding 13-PTNLD9-TUMOR_peak_6921 chr10 34991143 34991274 + 12.73857 NA intron (NM_001184791, intron 1 of 20) AluJr|SINE|Alu 113045 NM_001184791 56288 Hs.131489 NM_019619 HPRD:05994 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 13-PTNLD9-TUMOR_peak_18682 chr16 19396067 19396270 + 12.73857 NA Intergenic Intergenic -25889 NM_001105249 79838 Hs.115838 NM_024780 HPRD:15516 TMC5 - transmembrane channel-like 5 protein-coding 13-PTNLD9-TUMOR_peak_6127 chr1 244899624 244899836 + 12.73857 NA Intergenic LTR8|LTR|ERV1 83380 NR_123736 51029 Hs.498317 NM_016076 HPRD:15153 DESI2 C1orf121|DESI|DESI1|DeSI-2|FAM152A|PNAS-4|PPPDE1 desumoylating isopeptidase 2 protein-coding 13-PTNLD9-TUMOR_peak_48607 chr7 101499829 101499975 + 12.73857 NA intron (NM_181552, intron 1 of 23) intron (NM_181552, intron 1 of 23) 39020 NM_181552 1523 Hs.191482 NM_001913 HPRD:00295 CUX1 CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GOLIM6|Nbla10317|p100|p110|p200|p75 cut-like homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_9071 chr11 11863435 11863763 + 12.73857 NA 5' UTR (NM_017944, exon 1 of 27) 5' UTR (NM_017944, exon 1 of 27) 629 NM_017944 55031 Hs.577256 NM_017944 ENSG00000170242 USP47 TRFP ubiquitin specific peptidase 47 protein-coding 13-PTNLD9-TUMOR_peak_24284 chr19 16679801 16679951 + 12.73748 NA intron (NM_024881, intron 2 of 5) AluSc|SINE|Alu 3317 NM_024881 79939 Hs.620596 NM_024881 HPRD:15373 SLC35E1 - solute carrier family 35, member E1 protein-coding 13-PTNLD9-TUMOR_peak_47957 chr7 74168377 74168722 + 12.73748 NA intron (NM_033001, intron 29 of 33) intron (NM_033001, intron 29 of 33) -19760 NM_000265 653361 Hs.647047 NM_000265 ENSG00000158517 NCF1 NCF1A|NOXO2|SH3PXD1A|p47phox neutrophil cytosolic factor 1 protein-coding 13-PTNLD9-TUMOR_peak_5587 chr1 224685961 224686187 + 12.72663 NA Intergenic Intergenic -64073 NM_001115113 80232 Hs.497873 NM_025160 HPRD:18298 WDR26 CDW2|GID7|MIP2 WD repeat domain 26 protein-coding 13-PTNLD9-TUMOR_peak_4222 chr1 164582527 164582678 + 12.72663 NA intron (NM_001204961, intron 2 of 7) L2b|LINE|L2 54005 NM_002585 5087 Hs.557097 NM_002585 HPRD:08889 PBX1 - pre-B-cell leukemia homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_9513 chr11 34621113 34621458 + 12.72663 NA Intergenic Intergenic -21303 NM_012153 26298 Hs.653859 NM_012153 EHF ESE3|ESE3B|ESEJ ets homologous factor protein-coding 13-PTNLD9-TUMOR_peak_5246 chr1 206234571 206234796 + 12.72663 NA Intergenic Intergenic 10400 NM_000707 553 Hs.1372 NM_000707 AVPR1B AVPR3 arginine vasopressin receptor 1B protein-coding 13-PTNLD9-TUMOR_peak_29598 chr2 204676437 204676643 + 12.70789 NA Intergenic Intergenic -55971 NM_001037631 1493 Hs.247824 NM_005214 HPRD:00474 CTLA4 CD|CD152|CELIAC3|CTLA-4|GRD4|GSE|IDDM12 cytotoxic T-lymphocyte-associated protein 4 protein-coding 13-PTNLD9-TUMOR_peak_50157 chr8 17385507 17385691 + 12.70789 NA intron (NM_001008539, intron 1 of 11) L2c|LINE|L2 -10687 NM_003046 6542 Hs.448520 NM_003046 HPRD:03524 SLC7A2 ATRC2|CAT2|HCAT2 solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 protein-coding 13-PTNLD9-TUMOR_peak_27511 chr2 87766407 87766574 + 12.70789 NA intron (NR_024206, intron 1 of 1) intron (NR_024206, intron 1 of 1) 11516 NR_024206 112597 Hs.652166 NM_052871 HPRD:14654 LINC00152 C2orf59|NCRNA00152 long intergenic non-protein coding RNA 152 ncRNA 13-PTNLD9-TUMOR_peak_27076 chr2 64870477 64870619 + 12.70789 NA intron (NM_014755, intron 1 of 1) intron (NM_014755, intron 1 of 1) 10498 NM_014755 9792 Hs.591569 NM_014755 HPRD:18040 SERTAD2 Sei-2|TRIP-Br2 SERTA domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_17769 chr15 80325574 80325832 + 12.70789 NA Intergenic Intergenic -26207 NM_001242917 54469 Hs.596679 NM_019006 HPRD:18314 ZFAND6 AWP1|ZA20D3|ZFAND5B zinc finger, AN1-type domain 6 protein-coding 13-PTNLD9-TUMOR_peak_39680 chr4 154126248 154126544 + 12.70789 NA intron (NM_015271, intron 1 of 11) intron (NM_015271, intron 1 of 11) 798 NM_015271 23321 Hs.435711 NM_015271 HPRD:10279 TRIM2 CMT2R|RNF86 tripartite motif containing 2 protein-coding 13-PTNLD9-TUMOR_peak_27882 chr2 102857324 102857572 + 12.70789 NA Intergenic Intergenic 54015 NM_003854 8808 Hs.659863 NM_003854 HPRD:05150 IL1RL2 IL-1Rrp2|IL-36R|IL1R-rp2|IL1RRP2 interleukin 1 receptor-like 2 protein-coding 13-PTNLD9-TUMOR_peak_13253 chr12 68630469 68630671 + 12.70789 NA Intergenic Intergenic -10999 NM_018402 55801 Hs.272350 NM_018402 HPRD:16140 IL26 AK155|IL-26 interleukin 26 protein-coding 13-PTNLD9-TUMOR_peak_41656 chr5 103110478 103110728 + 12.70789 NA Intergenic Intergenic -212101 NM_031438 83594 Hs.434289 NM_031438 HPRD:10123 NUDT12 - nudix (nucleoside diphosphate linked moiety X)-type motif 12 protein-coding 13-PTNLD9-TUMOR_peak_36083 chr3 137893464 137893811 + 12.70750 NA exon (NM_016216, exon 1 of 8) exon (NM_016216, exon 1 of 8) 154 NM_016216 51163 Hs.477700 NM_016216 HPRD:07384 DBR1 - debranching RNA lariats 1 protein-coding 13-PTNLD9-TUMOR_peak_53885 chr9 90214824 90214960 + 12.70750 NA intron (NM_001288729, intron 2 of 25) MER82|DNA|TcMar-Tigger 101442 NM_001288729 1612 Hs.380277 NM_004938 HPRD:02902 DAPK1 DAPK death-associated protein kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_36395 chr3 150586186 150586367 + 12.70750 NA Intergenic Intergenic 75747 NM_052995 7401 Hs.745448 NM_052995 HPRD:05905 CLRN1 RP61|USH3|USH3A clarin 1 protein-coding 13-PTNLD9-TUMOR_peak_15962 chr14 61992142 61992379 + 12.70750 NA intron (NM_006255, intron 10 of 13) intron (NM_006255, intron 10 of 13) 44652 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LOC101927780 - uncharacterized LOC101927780 ncRNA 13-PTNLD9-TUMOR_peak_51892 chr8 126283727 126283914 + 12.70703 NA intron (NM_173685, intron 5 of 7) intron (NM_173685, intron 5 of 7) -158743 NM_025195 10221 Hs.444947 NM_025195 HPRD:09863 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 13-PTNLD9-TUMOR_peak_18239 chr16 2262697 2262873 + 12.70690 NA 3' UTR (NM_001042371, exon 2 of 2) 3' UTR (NM_001042371, exon 2 of 2) -1716 NM_182563 283870 Hs.647399 NM_182563 BRICD5 C16orf79 BRICHOS domain containing 5 protein-coding 13-PTNLD9-TUMOR_peak_21046 chr17 39771720 39771994 + 12.69496 NA Intergenic Intergenic -2778 NM_005557 3868 Hs.655160 NM_005557 HPRD:01018 KRT16 CK16|FNEPPK|K16|K1CP|KRT16A|NEPPK|PC1 keratin 16 protein-coding 13-PTNLD9-TUMOR_peak_36269 chr3 144975824 144976024 + 12.69496 NA Intergenic L1PA3|LINE|L1 903358 NM_000935 5352 Hs.477866 NM_000935 HPRD:03519 PLOD2 LH2|TLH procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 protein-coding 13-PTNLD9-TUMOR_peak_49430 chr7 142103173 142103464 + 12.69496 NA Intergenic L2b|LINE|L2 -131250 NR_036483 207147 Hs.604069 NR_036483 TRY2P - trypsinogen-like pseudogene pseudo 13-PTNLD9-TUMOR_peak_51692 chr8 118859953 118860263 + 12.69353 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 263950 NM_000127 2131 Hs.492618 NM_000127 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_11478 chr11 123029970 123030120 + 12.69353 NA intron (NM_024769, intron 1 of 6) intron (NM_024769, intron 1 of 6) 35962 NM_024769 79827 Hs.591949 NM_024769 HPRD:16513 CLMP ACAM|ASAM|CSBM|CSBS CXADR-like membrane protein protein-coding 13-PTNLD9-TUMOR_peak_45734 chr6 91006500 91006707 + 12.69353 NA promoter-TSS (NM_001170794) promoter-TSS (NM_001170794) 24 NM_021813 60468 Hs.269764 NM_021813 HPRD:12012 BACH2 BTBD25 BTB and CNC homology 1, basic leucine zipper transcription factor 2 protein-coding 13-PTNLD9-TUMOR_peak_27287 chr2 74058063 74058434 + 12.69353 NA intron (NM_201647, intron 2 of 9) intron (NM_201647, intron 2 of 9) 2123 NM_213622 10617 Hs.469018 NM_006463 HPRD:05877 STAMBP AMSH|MICCAP STAM binding protein protein-coding 13-PTNLD9-TUMOR_peak_12408 chr12 29266029 29266383 + 12.69353 NA Intergenic L1M2|LINE|L1 -35730 NM_001271783 55711 Hs.728955 NM_018099 HPRD:14723 FAR2 MLSTD1|SDR10E2 fatty acyl CoA reductase 2 protein-coding 13-PTNLD9-TUMOR_peak_22914 chr18 32914840 32915087 + 12.69353 NA 3' UTR (NM_006965, exon 4 of 4) 3' UTR (NM_006965, exon 4 of 4) 9463 NM_006965 7572 Hs.514802 NM_006965 HPRD:01921 ZNF24 KOX17|RSG-A|ZNF191|ZSCAN3|Zfp191 zinc finger protein 24 protein-coding 13-PTNLD9-TUMOR_peak_47064 chr7 23397014 23397229 + 12.69353 NA intron (NM_006547, intron 5 of 14) intron (NM_006547, intron 5 of 14) 58181 NM_138446 115416 Hs.87385 NM_138446 MALSU1 C7orf30|mtRsfA mitochondrial assembly of ribosomal large subunit 1 protein-coding 13-PTNLD9-TUMOR_peak_51677 chr8 117943594 117943770 + 12.69353 NA Intergenic Intergenic -6782 NM_001025357 441376 Hs.437551 NM_001025357 AARD C8orf85 alanine and arginine rich domain containing protein protein-coding 13-PTNLD9-TUMOR_peak_49157 chr7 132149615 132149850 + 12.69353 NA intron (NM_001105543, intron 3 of 3) intron (NM_001105543, intron 3 of 3) 111591 NM_020911 91584 Hs.511454 NM_020911 HPRD:10901 PLXNA4 FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003 plexin A4 protein-coding 13-PTNLD9-TUMOR_peak_54420 chr9 112878896 112879100 + 12.69353 NA intron (NM_001004065, intron 1 of 3) intron (NM_001004065, intron 1 of 3) -8783 NM_001136562 11217 Hs.591908 NM_001004065 ENSG00000241978 AKAP2 AKAP-2|AKAPKL|PRKA2 A kinase (PRKA) anchor protein 2 protein-coding 13-PTNLD9-TUMOR_peak_4464 chr1 174959637 174959899 + 12.69353 NA 3' UTR (NM_001243764, exon 7 of 7) 3' UTR (NM_001243764, exon 7 of 7) -8803 NM_001007214 27101 Hs.508524 NM_014412 HPRD:07316 CACYBP GIG5|S100A6BP|SIP calcyclin binding protein protein-coding 13-PTNLD9-TUMOR_peak_42071 chr5 132946753 132946949 + 12.69046 NA intron (NM_015082, intron 1 of 15) CpG 1372 NM_015082 23105 Hs.483390 NM_015082 HPRD:17022 FSTL4 - follistatin-like 4 protein-coding 13-PTNLD9-TUMOR_peak_35616 chr3 123948460 123948705 + 12.69046 NA intron (NM_001024660, intron 2 of 59) intron (NM_001024660, intron 2 of 59) 96806 NR_049798 100847021 NR_049798 MIR5002 - microRNA 5002 ncRNA 13-PTNLD9-TUMOR_peak_28820 chr2 157909599 157909750 + 12.69046 NA Intergenic Intergenic -204666 NM_014568 11227 Hs.269027 NM_014568 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 13-PTNLD9-TUMOR_peak_51721 chr8 119683166 119683425 + 12.69046 NA intron (NR_038210, intron 3 of 4) L2a|LINE|L2 -49061 NR_109794 401474 Hs.359393 NM_207506 HPRD:15293 SAMD12 - sterile alpha motif domain containing 12 protein-coding 13-PTNLD9-TUMOR_peak_46236 chr6 148514217 148514661 + 12.69046 NA Intergenic Intergenic -149290 NM_015278 23328 Hs.193133 NM_015278 HPRD:06408 SASH1 SH3D6A|dJ323M4|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_46545 chr6 168250635 168250947 + 12.69046 NA intron (NM_001291964, intron 1 of 32) intron (NM_001291964, intron 1 of 32) 22476 NM_001291964 4301 Hs.614974 NM_005936 HPRD:01164 MLLT4 AF6 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4 protein-coding 13-PTNLD9-TUMOR_peak_27112 chr2 65857864 65858164 + 12.69046 NA Intergenic Intergenic -198358 NM_181784 200734 Hs.59332 NM_181784 HPRD:18100 SPRED2 Spred-2 sprouty-related, EVH1 domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_19265 chr16 48054834 48054957 + 12.69046 NA Intergenic L1PA2|LINE|L1 125786 NM_033226 94160 Hs.410111 NM_033226 HPRD:06128 ABCC12 MRP9 ATP-binding cassette, sub-family C (CFTR/MRP), member 12 protein-coding 13-PTNLD9-TUMOR_peak_27996 chr2 110663494 110663665 + 12.69016 NA 3' UTR (NM_033514, exon 3 of 3) 3' UTR (NM_033514, exon 3 of 3) 7570 NM_033514 96626 Hs.535619 NM_033514 HPRD:17277 LIMS3 PINCH-3 LIM and senescent cell antigen-like domains 3 protein-coding 13-PTNLD9-TUMOR_peak_54471 chr9 115516124 115516271 + 12.69016 NA intron (NM_001012994, intron 1 of 8) intron (NM_001012994, intron 1 of 8) 3063 NM_001012994 401548 Hs.522350 NM_001012994 ENSG00000148158 SNX30 ATG24A sorting nexin family member 30 protein-coding 13-PTNLD9-TUMOR_peak_10392 chr11 67782170 67782366 + 12.68093 NA intron (NM_001030010, intron 1 of 8) intron (NM_001030010, intron 1 of 8) 4493 NM_001290058 221 Hs.523841 NM_000694 HPRD:02716 ALDH3B1 ALDH4|ALDH7 aldehyde dehydrogenase 3 family, member B1 protein-coding 13-PTNLD9-TUMOR_peak_2414 chr1 89990581 89990766 + 12.68068 NA intron (NM_001134476, intron 1 of 7) CpG 276 NM_001134476 23507 Hs.482017 NM_015350 HPRD:18145 LRRC8B TA-LRRP|TALRRP leucine rich repeat containing 8 family, member B protein-coding 13-PTNLD9-TUMOR_peak_54374 chr9 111311506 111311770 + 12.67726 NA Intergenic Intergenic 306637 NM_006686 10880 Hs.534390 NM_006686 ACTL7B Tact1 actin-like 7B protein-coding 13-PTNLD9-TUMOR_peak_49523 chr7 144028560 144028834 + 12.67711 NA Intergenic Intergenic -9514 NR_046931 100873765 NR_046931 ENSG00000223280 RNU6-57P RNU6-57 RNA, U6 small nuclear 57, pseudogene snRNA 13-PTNLD9-TUMOR_peak_1850 chr1 54868648 54868786 + 12.66781 NA intron (NM_145716, intron 3 of 17) intron (NM_145716, intron 3 of 17) 3351 NM_001009955 23648 Hs.476706 NM_018070 HPRD:09578 SSBP3 CSDP|SSDP|SSDP1 single stranded DNA binding protein 3 protein-coding 13-PTNLD9-TUMOR_peak_25646 chr19 54943419 54943653 + 12.66781 NA intron (NM_001005367, intron 10 of 12) MIR|SINE|MIR -16804 NM_052925 114823 Hs.502378 NM_052925 HPRD:11226 LENG8 pp13842 leukocyte receptor cluster (LRC) member 8 protein-coding 13-PTNLD9-TUMOR_peak_20924 chr17 35849021 35849197 + 12.66781 NA promoter-TSS (NM_007026) promoter-TSS (NM_007026) -842 NM_007026 11072 Hs.91448 NM_007026 HPRD:09427 DUSP14 MKP-L|MKP6 dual specificity phosphatase 14 protein-coding 13-PTNLD9-TUMOR_peak_20067 chr16 88340945 88341092 + 12.66781 NA Intergenic L1MB7|LINE|L1 113131 NR_110944 101928880 Hs.634835 NR_110944 ENSG00000260420 LOC101928880 LA16c-444G7.2 uncharacterized LOC101928880 ncRNA 13-PTNLD9-TUMOR_peak_9617 chr11 43797638 43797803 + 12.65598 NA intron (NM_016142, intron 3 of 10) L1PA3|LINE|L1 95577 NM_016142 51144 Hs.132513 NM_016142 HPRD:09989 HSD17B12 KAR|SDR12C1 hydroxysteroid (17-beta) dehydrogenase 12 protein-coding 13-PTNLD9-TUMOR_peak_1458 chr1 43795951 43796151 + 12.65598 NA Intergenic Intergenic -7424 NM_005373 4352 Hs.82906 NM_005373 HPRD:01161 MPL C-MPL|CD110|MPLV|THCYT2|TPOR MPL proto-oncogene, thrombopoietin receptor protein-coding 13-PTNLD9-TUMOR_peak_28630 chr2 141032969 141033296 + 12.65598 NA intron (NM_018557, intron 84 of 90) intron (NM_018557, intron 84 of 90) 1378238 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_37722 chr4 4577078 4577441 + 12.65598 NA intron (NR_037888, intron 2 of 5) CpG 33401 NR_037888 100507266 Hs.276795 NR_037888 ENSG00000247708 STX18-AS1 - STX18 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_42491 chr5 145662975 145663283 + 12.65598 NA intron (NM_018989, intron 19 of 20) intron (NM_018989, intron 19 of 20) -55458 NM_002700 5459 Hs.553499 NM_002700 HPRD:03911 POU4F3 BRN3C|DFNA15 POU class 4 homeobox 3 protein-coding 13-PTNLD9-TUMOR_peak_23415 chr18 65930296 65930439 + 12.65598 NA Intergenic Intergenic 451986 NM_019022 54495 Hs.440534 NM_019022 HPRD:15591 TMX3 PDIA13|TXNDC10 thioredoxin-related transmembrane protein 3 protein-coding 13-PTNLD9-TUMOR_peak_33833 chr3 13263171 13263327 + 12.65268 NA Intergenic Intergenic -148632 NM_001134382 9922 Hs.475506 NM_014869 HPRD:11052 IQSEC1 ARF-GEP100|ARFGEP100|BRAG2|GEP100 IQ motif and Sec7 domain 1 protein-coding 13-PTNLD9-TUMOR_peak_31756 chr20 60849585 60849911 + 12.65206 NA intron (NM_014835, intron 6 of 13) intron (NM_014835, intron 6 of 13) -28204 NM_175573 11047 Hs.90107 NM_007002 HPRD:06440 ADRM1 ARM-1|ARM1|GP110 adhesion regulating molecule 1 protein-coding 13-PTNLD9-TUMOR_peak_7663 chr10 72847812 72848102 + 12.65206 NA Intergenic L2b|LINE|L2 -124335 NM_001244889 219699 Hs.522997 NM_170744 HPRD:08487 UNC5B UNC5H2|p53RDL1 unc-5 homolog B (C. elegans) protein-coding 13-PTNLD9-TUMOR_peak_38686 chr4 79567132 79567289 + 12.65206 NA promoter-TSS (NR_038308) promoter-TSS (NR_038308) 62 NR_038305 100505702 Hs.235795 NR_038303 LINC01094 - long intergenic non-protein coding RNA 1094 ncRNA 13-PTNLD9-TUMOR_peak_31379 chr20 48293392 48293518 + 12.65206 NA intron (NM_004776, intron 1 of 8) intron (NM_004776, intron 1 of 8) 36966 NM_004776 9334 Hs.370487 NM_004776 HPRD:06807 B4GALT5 B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5 protein-coding 13-PTNLD9-TUMOR_peak_48312 chr7 92327929 92328089 + 12.65206 NA intron (NM_001259, intron 4 of 7) intron (NM_001259, intron 4 of 7) -108301 NR_109929 257415 Hs.18564 NM_152789 HPRD:17557 FAM133B - family with sequence similarity 133, member B protein-coding 13-PTNLD9-TUMOR_peak_23772 chr19 6203619 6203855 + 12.65206 NA Intergenic AluY|SINE|Alu 68093 NM_001289177 81616 Hs.465720 NM_030924 HPRD:09824 ACSBG2 BGR|BRGL|PRTD-NY3|PRTDNY3 acyl-CoA synthetase bubblegum family member 2 protein-coding 13-PTNLD9-TUMOR_peak_11115 chr11 107363918 107364078 + 12.65206 NA Intergenic Intergenic -35426 NM_152434 143884 Hs.212140 NM_152434 HPRD:13102 CWF19L2 - CWF19-like 2, cell cycle control (S. pombe) protein-coding 13-PTNLD9-TUMOR_peak_16892 chr15 30113679 30113952 + 12.65206 NA promoter-TSS (NM_001301026) promoter-TSS (NM_001301026) -64 NM_001301026 7082 Hs.743990 NM_003257 HPRD:03002 TJP1 ZO-1 tight junction protein 1 protein-coding 13-PTNLD9-TUMOR_peak_49098 chr7 130683839 130684015 + 12.64989 NA intron (NR_109855, intron 2 of 4) intron (NR_109855, intron 2 of 4) 85704 NR_109780 100506860 Hs.635013 NR_109780 LOC100506860 - uncharacterized LOC100506860 ncRNA 13-PTNLD9-TUMOR_peak_26099 chr2 10554167 10554333 + 12.64668 NA intron (NM_134421, intron 3 of 5) intron (NM_134421, intron 3 of 5) 32725 NR_028374 100302743 Hs.730525 NR_028374 ENSG00000206633 SNORA80B ACA67B small nucleolar RNA, H/ACA box 80B snoRNA 13-PTNLD9-TUMOR_peak_47854 chr7 72614688 72615033 + 12.64668 NA intron (NR_002206, intron 19 of 23) intron (NR_002206, intron 19 of 23) -19814 NR_003186 654816 Hs.655201 NR_003186 ENSG00000182487 NCF1B NCF-1B|SH3PXD1B neutrophil cytosolic factor 1B pseudogene pseudo 13-PTNLD9-TUMOR_peak_50374 chr8 25037254 25037481 + 12.64657 NA Intergenic Intergenic -4920 NM_024940 80005 Hs.195403 NM_024940 HPRD:09925 DOCK5 - dedicator of cytokinesis 5 protein-coding 13-PTNLD9-TUMOR_peak_20314 chr17 4641737 4641846 + 12.64657 NA intron (NM_022059, intron 2 of 5) intron (NM_022059, intron 2 of 5) 1432 NM_001100812 58191 Hs.745037 NM_022059 HPRD:16103 CXCL16 CXCLG16|SR-PSOX|SRPSOX chemokine (C-X-C motif) ligand 16 protein-coding 13-PTNLD9-TUMOR_peak_45247 chr6 47666133 47666414 + 12.64657 NA promoter-TSS (NM_153838) promoter-TSS (NM_153838) -16 NM_153838 221393 Hs.150131 NM_153838 HPRD:17057 GPR115 PGR18 G protein-coupled receptor 115 protein-coding 13-PTNLD9-TUMOR_peak_51855 chr8 125153771 125153962 + 12.64657 NA intron (NR_103547, intron 1 of 4) MIR3|SINE|MIR 29897 NR_103547 157376 Hs.662360 NM_182525 HPRD:08138 FER1L6-AS2 C8orf78 FER1L6 antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_23530 chr18 77269319 77269499 + 12.64657 NA intron (NM_172387, intron 9 of 9) intron (NM_172387, intron 9 of 9) 109135 NM_172389 4772 Hs.534074 NM_006162 HPRD:02729 NFATC1 NF-ATC|NFAT2|NFATc nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1 protein-coding 13-PTNLD9-TUMOR_peak_28146 chr2 114086671 114086800 + 12.64657 NA Intergenic Intergenic -50237 NM_003466 7849 Hs.469728 NM_003466 HPRD:01335 PAX8 - paired box 8 protein-coding 13-PTNLD9-TUMOR_peak_36989 chr3 184241704 184241837 + 12.64657 NA Intergenic L1ME3C|LINE|L1 -37817 NM_004443 2049 Hs.2913 NM_004443 HPRD:03502 EPHB3 ETK2|HEK2|TYRO6 EPH receptor B3 protein-coding 13-PTNLD9-TUMOR_peak_35827 chr3 128564699 128564824 + 12.64657 NA Intergenic Intergenic 25623 NR_034179 653712 Hs.653243 NR_034179 ENSG00000231305 LOC653712 - intraflagellar transport 122 homolog (Chlamydomonas) pseudogene pseudo 13-PTNLD9-TUMOR_peak_49780 chr7 154958568 154958708 + 12.64657 NA Intergenic Intergenic -95371 NR_038945 100128264 Hs.248137 NR_038945 ENSG00000220575 HTR5AOS HTR5A-AS1 HTR5A opposite strand ncRNA 13-PTNLD9-TUMOR_peak_9906 chr11 57671287 57671498 + 12.64657 NA Intergenic Intergenic -119961 NM_001005212 219956 Hs.689841 NM_001005212 HPRD:17800 OR9Q1 - olfactory receptor, family 9, subfamily Q, member 1 protein-coding 13-PTNLD9-TUMOR_peak_5007 chr1 202055074 202055428 + 12.64546 NA Intergenic Intergenic -36778 NM_004767 9283 Hs.132049 NM_004767 GPR37L1 ET(B)R-LP-2|ETBR-LP-2 G protein-coupled receptor 37 like 1 protein-coding 13-PTNLD9-TUMOR_peak_27866 chr2 102589398 102589917 + 12.63271 NA Intergenic Intergenic -10270 NR_103791 100506328 Hs.516245 NR_103791 LINC01127 - long intergenic non-protein coding RNA 1127 ncRNA 13-PTNLD9-TUMOR_peak_1957 chr1 59509553 59509826 + 12.63271 NA intron (NR_110626, intron 2 of 2) intron (NR_110626, intron 2 of 2) 23541 NR_110626 101926925 NR_110626 LINC01358 - long intergenic non-protein coding RNA 1358 ncRNA 13-PTNLD9-TUMOR_peak_38437 chr4 56050556 56050711 + 12.63271 NA Intergenic Intergenic -58871 NM_002253 3791 Hs.479756 NM_002253 HPRD:01867 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor (a type III receptor tyrosine kinase) protein-coding 13-PTNLD9-TUMOR_peak_34534 chr3 49255996 49256351 + 12.63271 NA intron (NM_178173, intron 4 of 9) LTR18B|LTR|ERVL 19240 NM_001135197 339834 Hs.631931 NM_178173 HPRD:14172 CCDC36 CT74 coiled-coil domain containing 36 protein-coding 13-PTNLD9-TUMOR_peak_21399 chr17 47592708 47592993 + 12.63271 NA TTS (NM_002507) TTS (NM_002507) 4671 NR_106751 102465141 NR_106751 MIR6165 hsa-mir-6165 microRNA 6165 ncRNA 13-PTNLD9-TUMOR_peak_51253 chr8 87120875 87121149 + 12.63271 NA intron (NM_152565, intron 1 of 7) intron (NM_152565, intron 1 of 7) 9873 NM_152565 245972 Hs.436360 NM_152565 HPRD:16522 ATP6V0D2 ATP6D2|VMA6 ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d2 protein-coding 13-PTNLD9-TUMOR_peak_30132 chr2 239078538 239078729 + 12.63271 NA TTS (NM_030768) TTS (NM_030768) 10984 NM_001291832 151176 Hs.24951 NM_152521 FAM132B C1QTNF15|CTRP15 family with sequence similarity 132, member B protein-coding 13-PTNLD9-TUMOR_peak_3003 chr1 117032060 117032253 + 12.63271 NA Intergenic Intergenic -70912 NR_027646 84852 Hs.664752 NM_032766 ENSG00000203865 ATP1A1-AS1 ATP1A1OS|C1orf203 ATP1A1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_26793 chr2 46051039 46051205 + 12.63271 NA intron (NM_005400, intron 1 of 14) intron (NM_005400, intron 1 of 14) 172079 NM_005400 5581 Hs.580351 NM_005400 HPRD:01500 PRKCE PKCE|nPKC-epsilon protein kinase C, epsilon protein-coding 13-PTNLD9-TUMOR_peak_26729 chr2 43521058 43521212 + 12.63271 NA intron (NM_022065, intron 31 of 37) L3|LINE|CR1 66785 NR_027251 100129726 Hs.194480 NM_178529 LINC01126 - long intergenic non-protein coding RNA 1126 ncRNA 13-PTNLD9-TUMOR_peak_5620 chr1 225943092 225943292 + 12.63271 NA Intergenic MIRb|SINE|MIR -22323 NM_003133 6726 Hs.511425 NM_003133 HPRD:02830 SRP9 ALURBP signal recognition particle 9kDa protein-coding 13-PTNLD9-TUMOR_peak_54401 chr9 112107894 112108228 + 12.63271 NA Intergenic Intergenic -24817 NM_018424 54566 Hs.591901 NM_018424 HPRD:09940 EPB41L4B CG1|EHM2 erythrocyte membrane protein band 4.1 like 4B protein-coding 13-PTNLD9-TUMOR_peak_9370 chr11 27490218 27490483 + 12.63226 NA intron (NM_018490, intron 1 of 17) intron (NM_018490, intron 1 of 17) 3984 NM_018490 55366 Hs.502176 NM_018490 HPRD:05978 LGR4 BNMD17|GPR48 leucine-rich repeat containing G protein-coupled receptor 4 protein-coding 13-PTNLD9-TUMOR_peak_56712 chrX 153637608 153637798 + 12.62837 NA promoter-TSS (NM_006730) promoter-TSS (NM_006730) -128 NM_006730 1774 Hs.401929 NM_006730 HPRD:02096 DNASE1L1 DNAS1L1|DNASEX|DNL1L|G4.8|XIB deoxyribonuclease I-like 1 protein-coding 13-PTNLD9-TUMOR_peak_32519 chr21 45426227 45426337 + 12.62837 NA Intergenic L1MD1|LINE|L1 -5924 NM_003274 7109 Hs.126221 NM_003274 HPRD:03656 TRAPPC10 EHOC-1|EHOC1|GT334|TMEM1|TRS130|TRS30 trafficking protein particle complex 10 protein-coding 13-PTNLD9-TUMOR_peak_10518 chr11 71421503 71421691 + 12.62837 NA Intergenic HERVS71-int|LTR|ERV1 -76960 NM_018172 55199 Hs.567527 NM_018172 HPRD:13337 FAM86C1 FAM86C family with sequence similarity 86, member C1 protein-coding 13-PTNLD9-TUMOR_peak_37058 chr3 186306505 186306690 + 12.62837 NA Intergenic Intergenic 18132 NM_016306 51726 Hs.317192 NM_016306 HPRD:07485 DNAJB11 ABBP-2|ABBP2|DJ9|Dj-9|EDJ|ERdj3|ERj3|ERj3p|PRO1080|UNQ537 DnaJ (Hsp40) homolog, subfamily B, member 11 protein-coding 13-PTNLD9-TUMOR_peak_3412 chr1 147774545 147775369 + 12.62643 NA intron (NR_102404, intron 17 of 18).2 intron (NR_102404, intron 17 of 18).2 31721 NR_049810 100847044 NR_049810 MIR5087 - microRNA 5087 ncRNA 13-PTNLD9-TUMOR_peak_52347 chr8 142286674 142287118 + 12.62147 NA Intergenic Intergenic -22168 NM_001286646 57210 Hs.372492 NM_001080431 ENSG00000022567 SLC45A4 - solute carrier family 45, member 4 protein-coding 13-PTNLD9-TUMOR_peak_33587 chr3 4863205 4863433 + 12.61648 NA intron (NM_001168272, intron 59 of 60) intron (NM_001168272, intron 59 of 60) -70045 NR_004428 100126791 Hs.663059 NR_004428 ENSG00000235947 EGOT EGO|NCRNA00190 eosinophil granule ontogeny transcript (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_3809 chr1 154839687 154839860 + 12.61618 NA intron (NM_002249, intron 1 of 7) intron (NM_002249, intron 1 of 7) 2981 NM_001204087 3782 Hs.490765 NM_002249 HPRD:04283 KCNN3 KCa2.3|SK3|SKCA3|hSK3 potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3 protein-coding 13-PTNLD9-TUMOR_peak_18629 chr16 16168444 16168623 + 12.61618 NA intron (NM_004996, intron 14 of 30) intron (NM_004996, intron 14 of 30) 125099 NM_004996 4363 Hs.391464 NM_004996 HPRD:01153 ABCC1 ABC29|ABCC|GS-X|MRP|MRP1 ATP-binding cassette, sub-family C (CFTR/MRP), member 1 protein-coding 13-PTNLD9-TUMOR_peak_25216 chr19 47479523 47479978 + 12.60919 NA intron (NM_004491, intron 2 of 5) intron (NM_004491, intron 2 of 5) -44393 NM_002517 4861 Hs.79564 NM_002517 HPRD:09136 NPAS1 MOP5|PASD5|bHLHe11 neuronal PAS domain protein 1 protein-coding 13-PTNLD9-TUMOR_peak_32385 chr21 42797933 42798177 + 12.60919 NA promoter-TSS (NM_001178046) promoter-TSS (NM_001178046) 97 NM_002462 4599 Hs.517307 NM_002462 HPRD:00919 MX1 IFI-78K|IFI78|MX|MxA MX dynamin-like GTPase 1 protein-coding 13-PTNLD9-TUMOR_peak_31378 chr20 48291330 48291477 + 12.60919 NA intron (NM_004776, intron 1 of 8) intron (NM_004776, intron 1 of 8) 39018 NM_004776 9334 Hs.370487 NM_004776 HPRD:06807 B4GALT5 B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5 protein-coding 13-PTNLD9-TUMOR_peak_23355 chr18 59659620 59659827 + 12.60919 NA Intergenic Intergenic -99419 NM_173557 220441 Hs.165062 NM_173557 RNF152 - ring finger protein 152 protein-coding 13-PTNLD9-TUMOR_peak_20724 chr17 25572410 25572583 + 12.60919 NA Intergenic Intergenic 48526 NR_039748 100616277 NR_039748 miRBase:MI0016889 MIR4522 - microRNA 4522 ncRNA 13-PTNLD9-TUMOR_peak_45243 chr6 47619431 47619577 + 12.60919 NA Intergenic L2b|LINE|L2 -4822 NM_153839 222611 Hs.724860 NM_153839 HPRD:17055 GPR111 PGR20|hGPCR35 G protein-coupled receptor 111 protein-coding 13-PTNLD9-TUMOR_peak_8438 chr10 120264160 120264299 + 12.60491 NA Intergenic Intergenic 90931 NM_004248 2834 Hs.248119 NM_004248 HPRD:02937 PRLHR GPR10|GR3|PrRPR prolactin releasing hormone receptor protein-coding 13-PTNLD9-TUMOR_peak_48196 chr7 84267456 84267606 + 12.60491 NA Intergenic L3|LINE|CR1 105739 NR_110079 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 13-PTNLD9-TUMOR_peak_56696 chrX 153297630 153297867 + 12.60491 NA exon (NM_001110792, exon 2 of 3) exon (NM_001110792, exon 2 of 3) -12308 NR_031757 100313781 NR_031757 miRBase:MI0012489 MIR718 hsa-mir-718 microRNA 718 ncRNA 13-PTNLD9-TUMOR_peak_37890 chr4 8453670 8453815 + 12.60491 NA exon (NM_152544, exon 4 of 11) exon (NM_152544, exon 4 of 11) 11210 NM_152544 152992 Hs.566191 NM_024950 HPRD:08760 TRMT44 C4orf23|METTL19|TRM44 tRNA methyltransferase 44 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_22093 chr17 74966479 74966606 + 12.60491 NA Intergenic LTR10F|LTR|ERV1 97813 NM_198955 146664 Hs.144531 NM_144677 HPRD:14392 MGAT5B GnT-IX|GnT-VB mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B protein-coding 13-PTNLD9-TUMOR_peak_1936 chr1 59050192 59050479 + 12.60491 NA Intergenic Intergenic -7169 NM_002353 4070 Hs.23582 NM_002353 HPRD:00672 TACSTD2 EGP-1|EGP1|GA733-1|GA7331|GP50|M1S1|TROP2 tumor-associated calcium signal transducer 2 protein-coding 13-PTNLD9-TUMOR_peak_8496 chr10 123778970 123779302 + 12.60491 NA intron (NM_206862, intron 1 of 22) intron (NM_206862, intron 1 of 22) 30447 NM_206861 10579 Hs.501252 NM_006997 HPRD:05600 TACC2 AZU-1|ECTACC transforming, acidic coiled-coil containing protein 2 protein-coding 13-PTNLD9-TUMOR_peak_10502 chr11 70998372 70998607 + 12.60491 NA Intergenic MamRep1527|LTR|LTR -62647 NM_012309 22941 Hs.268726 NM_012309 HPRD:04479 SHANK2 AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 SH3 and multiple ankyrin repeat domains 2 protein-coding 13-PTNLD9-TUMOR_peak_13911 chr12 113634878 113634985 + 12.60491 NA intron (NM_138451, intron 2 of 2) intron (NM_138451, intron 2 of 2) 11600 NM_032848 84934 Hs.524762 NM_032848 HPRD:08606 RITA1 C12orf52|RITA RBPJ interacting and tubulin associated 1 protein-coding 13-PTNLD9-TUMOR_peak_41669 chr5 105790813 105791076 + 12.60491 NA Intergenic Intergenic 555771 NR_104671 102467213 Hs.570923 NR_104671 LOC102467213 - uncharacterized LOC102467213 ncRNA 13-PTNLD9-TUMOR_peak_5785 chr1 230220449 230220578 + 12.60491 NA intron (NM_004481, intron 1 of 15) intron (NM_004481, intron 1 of 15) 17571 NM_004481 2590 Hs.743964 NM_004481 HPRD:03782 GALNT2 GalNAc-T2 polypeptide N-acetylgalactosaminyltransferase 2 protein-coding 13-PTNLD9-TUMOR_peak_52003 chr8 128930654 128931135 + 12.59977 NA intron (NR_003367, intron 1 of 7) intron (NR_003367, intron 1 of 7) 28020 NR_003367 5820 Hs.133107 NR_003367 ENSG00000249859 PVT1 LINC00079|NCRNA00079 Pvt1 oncogene (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_27870 chr2 102602760 102603108 + 12.59977 NA TTS (NR_103791) TTS (NR_103791) 3007 NR_103791 100506328 Hs.516245 NR_103791 LINC01127 - long intergenic non-protein coding RNA 1127 ncRNA 13-PTNLD9-TUMOR_peak_7286 chr10 48427000 48427184 + 12.59977 NA intron (NM_004962, intron 2 of 2) intron (NM_004962, intron 2 of 2) -10220 NM_016204 2658 Hs.279463 NM_016204 HPRD:05492 GDF2 BMP-9|BMP9|HHT5 growth differentiation factor 2 protein-coding 13-PTNLD9-TUMOR_peak_23838 chr19 8356364 8356562 + 12.59977 NA Intergenic L2|LINE|L2 16777 NM_016579 51293 Hs.558499 NM_016579 HPRD:05929 CD320 8D6|8D6A|TCBLR CD320 molecule protein-coding 13-PTNLD9-TUMOR_peak_4704 chr1 183279902 183280334 + 12.59977 NA intron (NM_015039, intron 1 of 10) intron (NM_015039, intron 1 of 10) -6109 NM_170706 23057 Hs.497123 NM_015039 HPRD:09786 NMNAT2 C1orf15|PNAT2 nicotinamide nucleotide adenylyltransferase 2 protein-coding 13-PTNLD9-TUMOR_peak_20525 chr17 15563071 15563288 + 12.58881 NA intron (NM_006470, intron 3 of 8) intron (NM_006470, intron 3 of 8) 23014 NM_006470 10626 Hs.123534 NM_006470 HPRD:15552 TRIM16 EBBP tripartite motif containing 16 protein-coding 13-PTNLD9-TUMOR_peak_40431 chr5 16857838 16858042 + 12.58881 NA intron (NM_012334, intron 2 of 40) intron (NM_012334, intron 2 of 40) 78445 NM_012334 4651 Hs.481720 NM_012334 HPRD:03283 MYO10 - myosin X protein-coding 13-PTNLD9-TUMOR_peak_20041 chr16 87812766 87813048 + 12.58881 NA promoter-TSS (NR_120309) promoter-TSS (NR_120309) -153 NR_120309 102724467 Hs.587857 NR_120309 LOC102724467 - uncharacterized LOC102724467 ncRNA 13-PTNLD9-TUMOR_peak_40397 chr5 15009578 15009722 + 12.58881 NA Intergenic Intergenic -137763 NM_054027 56172 Hs.156727 NM_054027 HPRD:05509 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK ANKH inorganic pyrophosphate transport regulator protein-coding 13-PTNLD9-TUMOR_peak_11202 chr11 111789490 111789709 + 12.58881 NA promoter-TSS (NM_080659) promoter-TSS (NM_080659) -2 NM_080659 91894 Hs.97013 NM_080659 HPRD:14444 C11orf52 - chromosome 11 open reading frame 52 protein-coding 13-PTNLD9-TUMOR_peak_30941 chr20 35493720 35493871 + 12.58695 NA Intergenic Intergenic -1708 NM_080627 140710 Hs.460807 NM_080627 HPRD:11116 SOGA1 C20orf117|KIAA0889|SOGA suppressor of glucose, autophagy associated 1 protein-coding 13-PTNLD9-TUMOR_peak_2577 chr1 95391220 95391500 + 12.58124 NA promoter-TSS (NM_001286056) promoter-TSS (NM_001286056) 4 NM_001286056 1266 Hs.483454 NM_001839 HPRD:03848 CNN3 - calponin 3, acidic protein-coding 13-PTNLD9-TUMOR_peak_25462 chr19 51109451 51109675 + 12.58124 NA Intergenic CpG 1343 NR_004384 100126781 Hs.707968 NR_004384 SNAR-F - small ILF3/NF90-associated RNA F snRNA 13-PTNLD9-TUMOR_peak_3562 chr1 150524869 150525050 + 12.58124 NA TTS (NR_036211) TTS (NR_036211) 554 NR_036211 100422997 NR_036211 miRBase:MI0015856 MIR4257 - microRNA 4257 ncRNA 13-PTNLD9-TUMOR_peak_27516 chr2 87881794 87881990 + 12.57985 NA Intergenic Intergenic -47382 NR_039634 100616499 NR_039634 miRBase:MI0016775 MIR4435-1 - microRNA 4435-1 ncRNA 13-PTNLD9-TUMOR_peak_27115 chr2 65889915 65890097 + 12.57578 NA Intergenic Intergenic -230350 NM_181784 200734 Hs.59332 NM_181784 HPRD:18100 SPRED2 Spred-2 sprouty-related, EVH1 domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_516 chr1 16417879 16418015 + 12.57578 NA Intergenic Intergenic -17820 NM_182623 348487 Hs.126825 NM_182623 HPRD:08779 FAM131C C1orf117 family with sequence similarity 131, member C protein-coding 13-PTNLD9-TUMOR_peak_47088 chr7 24972575 24972793 + 12.57578 NA intron (NM_015550, intron 1 of 22) intron (NM_015550, intron 1 of 22) -40444 NR_104112 26031 Hs.520259 NM_015550 HPRD:09474 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein-like 3 protein-coding 13-PTNLD9-TUMOR_peak_37119 chr3 187482028 187482345 + 12.57578 NA Intergenic Intergenic -18673 NM_001706 604 Hs.478588 NM_001706 HPRD:00180 BCL6 BCL5|BCL6A|LAZ3|ZBTB27|ZNF51 B-cell CLL/lymphoma 6 protein-coding 13-PTNLD9-TUMOR_peak_37746 chr4 5573909 5574126 + 12.57578 NA intron (NM_147127, intron 19 of 21) MLT1A1|LTR|ERVL-MaLR 47134 NM_005750 10141 Hs.177972 NM_005750 HPRD:12826 C4orf6 aC1 chromosome 4 open reading frame 6 protein-coding 13-PTNLD9-TUMOR_peak_21039 chr17 39653101 39653359 + 12.57578 NA Intergenic Intergenic -7114 NM_003771 8689 Hs.248189 NM_003771 HPRD:05174 KRT36 HA6|KRTHA6|hHa6 keratin 36 protein-coding 13-PTNLD9-TUMOR_peak_5479 chr1 222628582 222628704 + 12.57578 NA Intergenic Intergenic 92801 NM_024746 79802 Hs.665660 NM_024746 HPRD:08587 HHIPL2 KIAA1822L HHIP-like 2 protein-coding 13-PTNLD9-TUMOR_peak_46735 chr7 3189499 3189846 + 12.57578 NA Intergenic Intergenic -106093 NM_032415 84433 Hs.648101 NM_032415 HPRD:06234 CARD11 BENTA|BIMP3|CARMA1|IMD11|PPBL caspase recruitment domain family, member 11 protein-coding 13-PTNLD9-TUMOR_peak_34533 chr3 49158182 49158472 + 12.57578 NA promoter-TSS (NM_001199161) promoter-TSS (NM_001199161) 44 NM_001199160 10869 Hs.255596 NM_006677 HPRD:18278 USP19 ZMYND9 ubiquitin specific peptidase 19 protein-coding 13-PTNLD9-TUMOR_peak_10289 chr11 66095903 66096078 + 12.57578 NA Intergenic Intergenic 8010 NM_004292 9610 Hs.1030 NM_004292 HPRD:05813 RIN1 - Ras and Rab interactor 1 protein-coding 13-PTNLD9-TUMOR_peak_50040 chr8 8299075 8299338 + 12.57578 NA Intergenic Intergenic -59862 NM_001080826 157285 Hs.583863 NM_001080826 ENSG00000182319 SGK223 PRAGMIN homolog of rat pragma of Rnd2 protein-coding 13-PTNLD9-TUMOR_peak_35932 chr3 131427164 131427387 + 12.57578 NA intron (NM_001289112, intron 3 of 15) L2|LINE|L2 -205415 NM_007208 11222 Hs.205163 NM_007208 HPRD:06175 MRPL3 COXPD9|MRL3|RPML3 mitochondrial ribosomal protein L3 protein-coding 13-PTNLD9-TUMOR_peak_38957 chr4 100763732 100764082 + 12.57578 NA intron (NM_014395, intron 3 of 8) intron (NM_014395, intron 3 of 8) 25926 NM_014395 27071 Hs.436271 NM_014395 HPRD:05773 DAPP1 BAM32 dual adaptor of phosphotyrosine and 3-phosphoinositides protein-coding 13-PTNLD9-TUMOR_peak_47235 chr7 36155190 36155659 + 12.57578 NA Intergenic Intergenic 20504 NR_108089 101928618 Hs.561704 NR_108089 ENSG00000261184 LOC101928618 - uncharacterized LOC101928618 ncRNA 13-PTNLD9-TUMOR_peak_40273 chr5 9468117 9468273 + 12.57578 NA intron (NM_003966, intron 1 of 22) MIRc|SINE|MIR -43250 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 CTD-2201E9.1 - uncharacterized LOC101929338 ncRNA 13-PTNLD9-TUMOR_peak_24231 chr19 15515623 15515845 + 12.57578 NA intron (NR_111971, intron 2 of 15) intron (NR_111971, intron 2 of 15) 14198 NR_111971 26993 Hs.399800 NM_014371 HPRD:10641 AKAP8L HA95|HAP95|NAKAP|NAKAP95 A kinase (PRKA) anchor protein 8-like protein-coding 13-PTNLD9-TUMOR_peak_26330 chr2 25328732 25328864 + 12.57578 NA intron (NM_014971, intron 4 of 22) intron (NM_014971, intron 4 of 22) 62761 NM_000939 5443 Hs.1897 NM_000939 HPRD:01462 POMC ACTH|CLIP|LPH|MSH|NPP|POC proopiomelanocortin protein-coding 13-PTNLD9-TUMOR_peak_54690 chr9 124816350 124816507 + 12.56648 NA intron (NM_001139442, intron 1 of 8) intron (NM_001139442, intron 1 of 8) 39457 NM_001139442 158135 Hs.438937 NM_194252 HPRD:10047 TTLL11 C9orf20|bA244O19.1 tubulin tyrosine ligase-like family, member 11 protein-coding 13-PTNLD9-TUMOR_peak_21666 chr17 57930707 57930866 + 12.56648 NA Intergenic L2c|LINE|L2 12159 NR_029493 406991 Hs.444569 NR_029493 miRBase:MI0000077 MIR21 MIRN21|hsa-mir-21|miR-21|miRNA21 microRNA 21 ncRNA 13-PTNLD9-TUMOR_peak_51435 chr8 102063674 102064213 + 12.56648 NA promoter-TSS (NR_033962) promoter-TSS (NR_033962) -339 NR_033962 441374 Hs.652045 NR_033962 ENSG00000248599 FLJ42969 - uncharacterized LOC441374 ncRNA 13-PTNLD9-TUMOR_peak_40886 chr5 54897032 54897401 + 12.56648 NA Intergenic Intergenic -66310 NM_176895 8611 Hs.696231 NM_003711 HPRD:06178 PPAP2A LLP1a|LPP1|PAP-2a|PAP2 phosphatidic acid phosphatase type 2A protein-coding 13-PTNLD9-TUMOR_peak_44286 chr6 27094967 27095076 + 12.56648 NA Intergenic Intergenic 5554 NM_021058 8970 Hs.591807 NM_021058 HIST1H2BJ H2B/r|H2BFR|H2BJ histone cluster 1, H2bj protein-coding 13-PTNLD9-TUMOR_peak_53435 chr9 66846796 66846923 + 12.55404 NA Intergenic ALR/Alpha|Satellite|centr -76108 NR_121570 101928381 Hs.708686 NR_121570 LOC101928381 - uncharacterized LOC101928381 ncRNA 13-PTNLD9-TUMOR_peak_22605 chr18 11640578 11640752 + 12.55390 NA Intergenic Intergenic 14275 NR_106975 102465690 NR_106975 MIR7153 hsa-mir-7153 microRNA 7153 ncRNA 13-PTNLD9-TUMOR_peak_11873 chr12 4273860 4274201 + 12.55337 NA Intergenic CpG -108872 NM_001759 894 Hs.376071 NM_001759 HPRD:00451 CCND2 KIAK0002 cyclin D2 protein-coding 13-PTNLD9-TUMOR_peak_18378 chr16 4550407 4550594 + 12.55337 NA intron (NM_001286267, intron 2 of 6) intron (NM_001286267, intron 2 of 6) 4641 NM_001127205 3163 Hs.284279 NM_002134 HPRD:00783 HMOX2 HO-2 heme oxygenase (decycling) 2 protein-coding 13-PTNLD9-TUMOR_peak_45904 chr6 111611498 111611651 + 12.55337 NA Intergenic LTR2B|LTR|ERV1 31092 NM_153369 91749 Hs.400572 NM_153369 KIAA1919 MFSD4B|NaGLT1 KIAA1919 protein-coding 13-PTNLD9-TUMOR_peak_38579 chr4 74570309 74570609 + 12.55337 NA Intergenic Intergenic -35764 NM_000584 3576 Hs.624 NM_000584 HPRD:00909 CXCL8 GCP-1|GCP1|IL8|LECT|LUCT|LYNAP|MDNCF|MONAP|NAF|NAP-1|NAP1 chemokine (C-X-C motif) ligand 8 protein-coding 13-PTNLD9-TUMOR_peak_39551 chr4 146600770 146600928 + 12.55337 NA promoter-TSS (NM_001080531) promoter-TSS (NM_001080531) -507 NM_001080531 646603 Hs.452865 NM_001080531 ENSG00000237136 C4orf51 - chromosome 4 open reading frame 51 protein-coding 13-PTNLD9-TUMOR_peak_29136 chr2 174904555 174904824 + 12.55337 NA Intergenic Intergenic -74259 NM_003111 6670 Hs.531587 NM_003111 HPRD:03483 SP3 SPR2 Sp3 transcription factor protein-coding 13-PTNLD9-TUMOR_peak_34103 chr3 25049824 25050025 + 12.55337 NA Intergenic Intergenic -165899 NM_001290216 5915 Hs.654490 NM_000965 HPRD:07183 RARB HAP|MCOPS12|NR1B2|RRB2 retinoic acid receptor, beta protein-coding 13-PTNLD9-TUMOR_peak_42969 chr5 170200334 170200501 + 12.55337 NA Intergenic Intergenic -10306 NM_001291985 2568 Hs.26225 NM_014211 HPRD:04105 GABRP - gamma-aminobutyric acid (GABA) A receptor, pi protein-coding 13-PTNLD9-TUMOR_peak_47516 chr7 54732192 54732376 + 12.55337 NA Intergenic CpG 94655 NM_014302 23480 Hs.488282 NM_014302 HPRD:15318 SEC61G SSS1 Sec61 gamma subunit protein-coding 13-PTNLD9-TUMOR_peak_16605 chr14 102537733 102537914 + 12.55337 NA Intergenic Intergenic 15689 NM_005348 3320 Hs.525600 NM_005348 HPRD:00777 HSP90AA1 EL52|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp89|Hsp90|LAP-2|LAP2 heat shock protein 90kDa alpha (cytosolic), class A member 1 protein-coding 13-PTNLD9-TUMOR_peak_53819 chr9 86940633 86940755 + 12.55337 NA intron (NM_022127, intron 2 of 18) intron (NM_022127, intron 2 of 18) 15000 NM_001199633 64078 Hs.535966 NM_022127 HPRD:12200 SLC28A3 CNT3 solute carrier family 28 (concentrative nucleoside transporter), member 3 protein-coding 13-PTNLD9-TUMOR_peak_13741 chr12 108765882 108766117 + 12.55318 NA Intergenic LTR33|LTR|ERVL -32905 NM_001142343 1240 Hs.197143 NM_004072 HPRD:03829 CMKLR1 CHEMERINR|ChemR23|DEZ|RVER1 chemokine-like receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_36412 chr3 151348920 151349234 + 12.55318 NA intron (NR_031678, intron 2 of 4) intron (NR_031678, intron 2 of 4) 1757 NR_031678 100313773 NR_031678 miRBase:MI0006412 MIR548H2 MIR548H-2|MIRN548H2 microRNA 548h-2 ncRNA 13-PTNLD9-TUMOR_peak_47346 chr7 44144908 44145266 + 12.55318 NA intron (NM_001129, intron 1 of 20) MIRb|SINE|MIR 1127 NM_001129 165 Hs.439463 NM_001129 HPRD:04281 AEBP1 ACLP AE binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_5615 chr1 225898659 225898772 + 12.55318 NA Intergenic L2c|LINE|L2 -57870 NM_018212 55740 Hs.497893 NM_018212 HPRD:12360 ENAH ENA|MENA|NDPP1 enabled homolog (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_1018 chr1 33446933 33447060 + 12.55318 NA Intergenic Intergenic -16582 NM_001127361 127544 Hs.591504 NM_153341 HPRD:13725 RNF19B IBRDC3|NKLAM ring finger protein 19B protein-coding 13-PTNLD9-TUMOR_peak_655 chr1 23076863 23077088 + 12.54986 NA intron (NM_004442, intron 1 of 15) MER113|DNA|hAT-Charlie 30965 NR_039832 100616391 NR_039832 MIR4684 - microRNA 4684 ncRNA 13-PTNLD9-TUMOR_peak_459 chr1 12656018 12656172 + 12.54986 NA intron (NM_004753, intron 1 of 5) CpG -17044 NR_106788 102466722 NR_106788 MIR6730 hsa-mir-6730 microRNA 6730 ncRNA 13-PTNLD9-TUMOR_peak_16935 chr15 31507113 31507278 + 12.54986 NA Intergenic Intergenic 15855 NM_001243538 283710 Hs.591097 NM_001243538 LOC283710 - uncharacterized LOC283710 protein-coding 13-PTNLD9-TUMOR_peak_52962 chr9 27529712 27529896 + 12.54986 NA promoter-TSS (NM_024761) promoter-TSS (NM_024761) 46 NM_024761 79817 Hs.369022 NM_024761 HPRD:14728 MOB3B C9orf35|MOB1D|MOBKL2B MOB kinase activator 3B protein-coding 13-PTNLD9-TUMOR_peak_47991 chr7 75024252 75024438 + 12.54986 NA promoter-TSS (NM_198924) promoter-TSS (NM_198924) -558 NM_198924 375593 Hs.632307 NM_198924 HPRD:18606 TRIM73 TRIM50B tripartite motif containing 73 protein-coding 13-PTNLD9-TUMOR_peak_35876 chr3 129679946 129680365 + 12.54986 NA Intergenic Intergenic -13081 NM_007117 7200 Hs.182231 NM_007117 HPRD:08944 TRH Pro-TRH|TRF thyrotropin-releasing hormone protein-coding 13-PTNLD9-TUMOR_peak_48435 chr7 98475990 98476194 + 12.54986 NA promoter-TSS (NM_003496) promoter-TSS (NM_003496) -21 NM_001244580 8295 Hs.203952 NM_003496 HPRD:04310 TRRAP PAF350/400|PAF400|STAF40|TR-AP|Tra1 transformation/transcription domain-associated protein protein-coding 13-PTNLD9-TUMOR_peak_8975 chr11 8739938 8740197 + 12.54485 NA intron (NM_139157, intron 3 of 18) L2a|LINE|L2 33081 NR_002977 677826 Hs.745552 NR_002977 SNORA45B ACA3-2|SNORA45 small nucleolar RNA, H/ACA box 45B snoRNA 13-PTNLD9-TUMOR_peak_29673 chr2 208118759 208119036 + 12.52737 NA intron (NR_110283, intron 1 of 3) intron (NR_110283, intron 1 of 3) 143 NR_110283 101927865 Hs.574609 NR_110283 ENSG00000234902 LOC101927865 - uncharacterized LOC101927865 ncRNA 13-PTNLD9-TUMOR_peak_4032 chr1 158975582 158975773 + 12.52737 NA Intergenic Intergenic -4005 NM_005531 3428 Hs.380250 NM_005531 HPRD:00969 IFI16 IFNGIP1|PYHIN2 interferon, gamma-inducible protein 16 protein-coding 13-PTNLD9-TUMOR_peak_49579 chr7 149083906 149084231 + 12.52737 NA Intergenic Intergenic 73985 NM_015694 27153 Hs.38512 NM_015694 HPRD:13849 ZNF777 - zinc finger protein 777 protein-coding 13-PTNLD9-TUMOR_peak_45896 chr6 111279847 111279970 + 12.52405 NA 5' UTR (NM_138408, exon 1 of 6) 5' UTR (NM_138408, exon 1 of 6) 145 NM_138408 112495 Hs.418520 NM_138408 HPRD:12886 GTF3C6 C6orf51|TFIIIC35|bA397G5.3 general transcription factor IIIC, polypeptide 6, alpha 35kDa protein-coding 13-PTNLD9-TUMOR_peak_17884 chr15 85473206 85473521 + 12.52405 NA intron (NM_001287761, intron 11 of 14) intron (NM_001287761, intron 11 of 14) 45471 NM_001287762 9154 Hs.459187 NM_004213 HPRD:07068 SLC28A1 CNT1|HCNT1 solute carrier family 28 (concentrative nucleoside transporter), member 1 protein-coding 13-PTNLD9-TUMOR_peak_50622 chr8 37749365 37749687 + 12.52405 NA intron (NM_001002814, intron 1 of 5) intron (NM_001002814, intron 1 of 5) 7489 NM_025151 80223 Hs.191179 NM_025151 HPRD:09787 RAB11FIP1 NOEL1A|RCP|rab11-FIP1 RAB11 family interacting protein 1 (class I) protein-coding 13-PTNLD9-TUMOR_peak_42240 chr5 138060219 138060584 + 12.52405 NA Intergenic Intergenic -28684 NM_001290309 1495 Hs.445981 NM_001903 HPRD:00285 CTNNA1 CAP102 catenin (cadherin-associated protein), alpha 1, 102kDa protein-coding 13-PTNLD9-TUMOR_peak_4409 chr1 172416814 172417061 + 12.51989 NA intron (NM_139240, intron 2 of 6) intron (NM_139240, intron 2 of 6) -3707 NM_002642 5279 Hs.188456 NM_002642 HPRD:03433 PIGC GPI2 phosphatidylinositol glycan anchor biosynthesis, class C protein-coding 13-PTNLD9-TUMOR_peak_3005 chr1 117057643 117057879 + 12.51907 NA intron (NM_001779, intron 5 of 5) intron (NM_001779, intron 5 of 5) 55954 NR_026665 965 Hs.34341 NM_001779 HPRD:01081 CD58 LFA-3|LFA3|ag3 CD58 molecule protein-coding 13-PTNLD9-TUMOR_peak_10358 chr11 67211093 67211312 + 12.51907 NA promoter-TSS (NM_020441) promoter-TSS (NM_020441) 90 NM_001018070 57175 Hs.6191 NM_020441 HPRD:16743 CORO1B CORONIN-2 coronin, actin binding protein, 1B protein-coding 13-PTNLD9-TUMOR_peak_47136 chr7 28895553 28895782 + 12.51907 NA Intergenic Intergenic 102362 NM_014817 9865 Hs.744120 NM_014817 TRIL - TLR4 interactor with leucine-rich repeats protein-coding 13-PTNLD9-TUMOR_peak_23186 chr18 48141291 48141516 + 12.51907 NA intron (NM_001292039, intron 1 of 4) Zaphod|DNA|hAT-Tip100 54919 NM_001292039 5596 Hs.433728 NM_002747 HPRD:01497 MAPK4 ERK-4|ERK4|PRKM4|p63-MAPK|p63MAPK mitogen-activated protein kinase 4 protein-coding 13-PTNLD9-TUMOR_peak_40027 chr4 186481126 186481346 + 12.51907 NA Intergenic MSTB|LTR|ERVL-MaLR -24524 NR_047562 27295 Hs.701364 NM_014476 PDLIM3 ALP PDZ and LIM domain 3 protein-coding 13-PTNLD9-TUMOR_peak_45547 chr6 79308729 79308957 + 12.51907 NA Intergenic LTR16A|LTR|ERVL -268418 NM_001010844 134728 Hs.656212 NM_001010844 HPRD:17157 IRAK1BP1 AIP70|SIMPL interleukin-1 receptor-associated kinase 1 binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_12652 chr12 46949880 46950191 + 12.51907 NA intron (NR_125380, intron 3 of 3) intron (NR_125380, intron 3 of 3) 172145 NR_125381 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 13-PTNLD9-TUMOR_peak_4150 chr1 161431711 161431937 + 12.51213 NA Intergenic CpG -43381 NM_021642 2212 Hs.352642 NM_021642 HPRD:00906 FCGR2A CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|IGFR2 Fc fragment of IgG, low affinity IIa, receptor (CD32) protein-coding 13-PTNLD9-TUMOR_peak_3625 chr1 151521445 151521567 + 12.51074 NA intron (NM_001126337, intron 1 of 11) intron (NM_001126337, intron 1 of 11) 3234 NR_030280 693139 NR_030280 MIR554 MIRN554|hsa-mir-554 microRNA 554 ncRNA 13-PTNLD9-TUMOR_peak_49904 chr7_gl000195_random 74415 74771 + 12.50958 NA intron (NM_001242480, intron 1 of 3) LTR25|LTR|ERV1 12126 NM_001242480 389831 Hs.743984 NM_001242480 LOC389831 - uncharacterized LOC389831 protein-coding 13-PTNLD9-TUMOR_peak_47302 chr7 42147220 42147353 + 12.50734 NA intron (NM_000168, intron 3 of 14) intron (NM_000168, intron 3 of 14) 129332 NM_000168 2737 Hs.21509 NM_000168 HPRD:01313 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 13-PTNLD9-TUMOR_peak_28109 chr2 113438353 113438513 + 12.50734 NA Intergenic Intergenic 34999 NM_005415 6574 Hs.187946 NM_005415 HPRD:08846 SLC20A1 GLVR1|Glvr-1|PIT1|PiT-1 solute carrier family 20 (phosphate transporter), member 1 protein-coding 13-PTNLD9-TUMOR_peak_27970 chr2 109533721 109533847 + 12.50734 NA intron (NM_022336, intron 5 of 11) L1MA5|LINE|L1 72044 NM_022336 10913 Hs.171971 NM_022336 HPRD:04974 EDAR DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1 ectodysplasin A receptor protein-coding 13-PTNLD9-TUMOR_peak_47288 chr7 41068657 41068962 + 12.50734 NA Intergenic Intergenic -49272 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 13-PTNLD9-TUMOR_peak_20520 chr17 15546157 15546407 + 12.50734 NA intron (NM_006470, intron 4 of 8) intron (NM_006470, intron 4 of 8) -23264 NM_001282540 374286 Hs.548021 NM_006382 HPRD:16699 CDRT1 C170RF1|C17ORF1|C17ORF1A|FBXW10B|FBXW10P1|HREP|SM25H2 CMT1A duplicated region transcript 1 protein-coding 13-PTNLD9-TUMOR_peak_42485 chr5 145407394 145407676 + 12.50734 NA intron (NM_152550, intron 5 of 9) intron (NM_152550, intron 5 of 9) 76411 NM_001029869 153770 Hs.162369 NM_001029869 HPRD:18737 PLAC8L1 - PLAC8-like 1 protein-coding 13-PTNLD9-TUMOR_peak_11185 chr11 111317419 111317526 + 12.50734 NA Intergenic Intergenic -28561 NR_046085 100132078 Hs.672662 NR_046085 ENSG00000255428 LOC100132078 - uncharacterized LOC100132078 ncRNA 13-PTNLD9-TUMOR_peak_45179 chr6 45642809 45643060 + 12.50734 NA Intergenic L1PA2|LINE|L1 252620 NM_001278478 860 Hs.535845 NM_004348 HPRD:02566 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA runt-related transcription factor 2 protein-coding 13-PTNLD9-TUMOR_peak_11645 chr11 129893193 129893388 + 12.50334 NA Intergenic Intergenic -20560 NM_020228 56980 Hs.275086 NM_020228 HPRD:11455 PRDM10 PFM7 PR domain containing 10 protein-coding 13-PTNLD9-TUMOR_peak_8979 chr11 8789169 8789366 + 12.50334 NA intron (NM_139157, intron 1 of 18) intron (NM_139157, intron 1 of 18) -1058 NR_120590 102724784 Hs.613276 NR_120590 LOC102724784 - uncharacterized LOC102724784 ncRNA 13-PTNLD9-TUMOR_peak_55094 chr9 140813282 140813614 + 12.50334 NA intron (NM_000718, intron 6 of 45) intron (NM_000718, intron 6 of 45) -26426 NR_121583 100133077 Hs.640081 NR_121583 ENSG00000203987 LOC100133077 - uncharacterized LOC100133077 ncRNA 13-PTNLD9-TUMOR_peak_51888 chr8 126226554 126226735 + 12.50334 NA intron (NM_173685, intron 5 of 7) intron (NM_173685, intron 5 of 7) 122561 NM_173685 286053 Hs.388297 NM_173685 HPRD:08131 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 non-SMC element 2, MMS21 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_23363 chr18 60118465 60118619 + 12.50334 NA Intergenic Intergenic -72116 NM_017742 54877 Hs.114191 NM_017742 HPRD:11696 ZCCHC2 C18orf49 zinc finger, CCHC domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_33666 chr3 8926416 8926685 + 12.50334 NA intron (NM_020165, intron 12 of 12) intron (NM_020165, intron 12 of 12) 78609 NM_020165 56852 Hs.375684 NM_020165 HPRD:09242 RAD18 RNF73 RAD18 E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_39619 chr4 151795652 151795841 + 12.50334 NA intron (NM_006726, intron 17 of 57) L1PA16|LINE|L1 140673 NM_001199282 987 Hs.480938 NM_006726 HPRD:07344 LRBA BGL|CDC4L|CVID8|LAB300|LBA LPS-responsive vesicle trafficking, beach and anchor containing protein-coding 13-PTNLD9-TUMOR_peak_23669 chr19 2723199 2723344 + 12.50334 NA Intergenic CpG -1881 NM_145173 148252 Hs.172753 NM_145173 HPRD:09710 DIRAS1 Di-Ras1|GBTS1|RIG DIRAS family, GTP-binding RAS-like 1 protein-coding 13-PTNLD9-TUMOR_peak_35992 chr3 133662752 133663012 + 12.49851 NA intron (NM_005630, intron 10 of 13) L2b|LINE|L2 -14226 NM_025041 80111 Hs.287691 NM_025041 HPRD:07981 C3orf36 - chromosome 3 open reading frame 36 protein-coding 13-PTNLD9-TUMOR_peak_55062 chr9 139977975 139978257 + 12.49851 NA 3' UTR (NM_207309, exon 9 of 9) 3' UTR (NM_207309, exon 9 of 9) 3153 NR_027447 100289341 Hs.593896 NR_027447 MAN1B1-AS1 - MAN1B1 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_16673 chr14 105439600 105439901 + 12.49412 NA intron (NM_138420, intron 1 of 6) intron (NM_138420, intron 1 of 6) 4944 NM_138420 113146 Hs.441783 NM_138420 ENSG00000185567 AHNAK2 C14orf78 AHNAK nucleoprotein 2 protein-coding 13-PTNLD9-TUMOR_peak_32874 chr22 22297068 22297230 + 12.48688 NA intron (NM_014634, intron 2 of 7) intron (NM_014634, intron 2 of 7) 10101 NM_014634 9647 Hs.112728 NM_014634 HPRD:10163 PPM1F CAMKP|CaMKPase|FEM-2|POPX2|hFEM-2 protein phosphatase, Mg2+/Mn2+ dependent, 1F protein-coding 13-PTNLD9-TUMOR_peak_24398 chr19 18415420 18415597 + 12.48688 NA Intergenic Intergenic 18493 NM_012321 25804 Hs.515255 NM_012321 HPRD:06284 LSM4 GRP|YER112W LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_45350 chr6 53722646 53722829 + 12.48203 NA intron (NM_018214, intron 2 of 13) intron (NM_018214, intron 2 of 13) 62959 NM_018214 55227 Hs.606493 NM_018214 ENSG00000137269 LRRC1 LANO|dJ523E19.1 leucine rich repeat containing 1 protein-coding 13-PTNLD9-TUMOR_peak_176 chr1 4663296 4663773 + 12.48203 NA Intergenic MER54B|LTR|ERVL -51571 NM_001042478 55966 Hs.25924 NM_018836 HPRD:15339 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 13-PTNLD9-TUMOR_peak_53141 chr9 35949031 35949264 + 12.48203 NA Intergenic Intergenic 9004 NM_019897 56656 Hs.553540 NM_019897 HPRD:17704 OR2S2 OR37A|OST715 olfactory receptor, family 2, subfamily S, member 2 protein-coding 13-PTNLD9-TUMOR_peak_43184 chr5 176728645 176729164 + 12.47927 NA intron (NM_001031677, intron 7 of 7) intron (NM_001031677, intron 7 of 7) 1841 NM_001031677 53917 Hs.16258 NM_130781 HPRD:06697 RAB24 - RAB24, member RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_48401 chr7 97557715 97557840 + 12.47746 NA Intergenic CpG 43861 NR_002822 389538 Hs.655977 NR_002822 MGC72080 - MGC72080 pseudogene pseudo 13-PTNLD9-TUMOR_peak_10373 chr11 67481479 67481599 + 12.47201 NA Intergenic Intergenic -32854 NM_001031615 222 Hs.87539 NM_000695 HPRD:03559 ALDH3B2 ALDH8 aldehyde dehydrogenase 3 family, member B2 protein-coding 13-PTNLD9-TUMOR_peak_2445 chr1 91486926 91487117 + 12.47182 NA promoter-TSS (NM_016620) promoter-TSS (NM_016620) 44 NM_016620 84146 Hs.173001 NM_016620 HPRD:15885 ZNF644 BM-005|MYP21|NatF|ZEP-2 zinc finger protein 644 protein-coding 13-PTNLD9-TUMOR_peak_42967 chr5 170172635 170173002 + 12.47182 NA Intergenic Intergenic -37905 NM_001291985 2568 Hs.26225 NM_014211 HPRD:04105 GABRP - gamma-aminobutyric acid (GABA) A receptor, pi protein-coding 13-PTNLD9-TUMOR_peak_11588 chr11 128077858 128078052 + 12.47182 NA Intergenic Intergenic 314250 NM_005238 2113 Hs.369438 NM_005238 HPRD:01260 ETS1 ETS-1|EWSR2|p54 v-ets avian erythroblastosis virus E26 oncogene homolog 1 protein-coding 13-PTNLD9-TUMOR_peak_15812 chr14 54831376 54831507 + 12.47100 NA Intergenic Intergenic -32232 NM_001130851 1033 Hs.84113 NM_005192 HPRD:00450 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin-dependent kinase inhibitor 3 protein-coding 13-PTNLD9-TUMOR_peak_41696 chr5 108137602 108137733 + 12.47100 NA intron (NM_005246, intron 3 of 19) MER44C|DNA|TcMar-Tigger 54144 NM_005246 2241 Hs.221472 NM_005246 FER FerT|PPP1R74|Pe1Fe10|Pe1Fe13|Pe1Fe3|Pe1Fe6|TYK3 fer (fps/fes related) tyrosine kinase protein-coding 13-PTNLD9-TUMOR_peak_42414 chr5 141655188 141655332 + 12.47100 NA Intergenic Intergenic 48722 NM_001293289 81848 Hs.323308 NM_030964 HPRD:10466 SPRY4 HH17 sprouty homolog 4 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_7467 chr10 61731763 61731962 + 12.47100 NA Intergenic L2a|LINE|L2 -11191 NR_024340 283025 Hs.522955 NM_001017982 ENSG00000235931 C10orf40 - chromosome 10 open reading frame 40 ncRNA 13-PTNLD9-TUMOR_peak_8539 chr10 126067538 126067716 + 12.47100 NA Intergenic Intergenic 39918 NM_000274 4942 Hs.523332 NM_000274 HPRD:02021 OAT GACR|HOGA|OATASE|OKT ornithine aminotransferase protein-coding 13-PTNLD9-TUMOR_peak_18509 chr16 11132773 11132999 + 12.47100 NA intron (NM_015226, intron 12 of 22) intron (NM_015226, intron 12 of 22) 94541 NM_001243403 23274 Hs.35490 NM_015226 HPRD:17185 CLEC16A Gop-1|KIAA0350 C-type lectin domain family 16, member A protein-coding 13-PTNLD9-TUMOR_peak_38808 chr4 87154844 87155074 + 12.47100 NA intron (NM_138982, intron 2 of 13) intron (NM_138982, intron 2 of 13) 114000 NR_110879 101929064 Hs.662221 NR_110879 ENSG00000250062 LOC101929064 - uncharacterized LOC101929064 ncRNA 13-PTNLD9-TUMOR_peak_18023 chr15 94314922 94315133 + 12.47100 NA Intergenic Intergenic -84762 NR_120321 101927153 Hs.371900 NR_120321 ENSG00000258476 LOC101927153 - uncharacterized LOC101927153 ncRNA 13-PTNLD9-TUMOR_peak_50240 chr8 21424027 21424133 + 12.47100 NA Intergenic Intergenic 222266 NM_001495 2675 Hs.441202 NM_001495 HPRD:11801 GFRA2 GDNFRB|NRTNR-ALPHA|NTNRA|RETL2|TRNR2 GDNF family receptor alpha 2 protein-coding 13-PTNLD9-TUMOR_peak_50509 chr8 29595049 29595181 + 12.47100 NA intron (NR_026765, intron 1 of 3) intron (NR_026765, intron 1 of 3) 10510 NR_026765 619351 Hs.566911 NR_026765 ENSG00000251191 LINC00589 C8orf75 long intergenic non-protein coding RNA 589 ncRNA 13-PTNLD9-TUMOR_peak_29474 chr2 198748236 198748376 + 12.47100 NA intron (NM_006226, intron 1 of 5) intron (NM_006226, intron 1 of 5) 78880 NM_006226 5334 Hs.153322 NM_006226 PLCL1 PLCE|PLCL|PLDL1|PPP1R127|PRIP phospholipase C-like 1 protein-coding 13-PTNLD9-TUMOR_peak_11227 chr11 112341248 112341375 + 12.47100 NA Intergenic Intergenic -11644 NR_120559 101928823 Hs.126118 NR_120559 ENSG00000254968 LOC101928823 - uncharacterized LOC101928823 ncRNA 13-PTNLD9-TUMOR_peak_36194 chr3 141112130 141112260 + 12.47100 NA intron (NM_001080412, intron 5 of 7) intron (NM_001080412, intron 5 of 7) 69140 NM_001080412 253461 Hs.518301 NM_152535 ENSG00000177311 ZBTB38 CIBZ|PPP1R171|ZNF921 zinc finger and BTB domain containing 38 protein-coding 13-PTNLD9-TUMOR_peak_46250 chr6 148736114 148736220 + 12.47100 NA intron (NM_015278, intron 2 of 19) intron (NM_015278, intron 2 of 19) 72438 NM_015278 23328 Hs.193133 NM_015278 HPRD:06408 SASH1 SH3D6A|dJ323M4|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_50351 chr8 23398465 23398622 + 12.47100 NA intron (NM_016612, intron 1 of 3) MIRb|SINE|MIR 12180 NM_016612 51312 Hs.596025 NM_016612 SLC25A37 MFRN|MFRN1|MSC|MSCP|PRO1278|PRO1584|PRO2217 solute carrier family 25 (mitochondrial iron transporter), member 37 protein-coding 13-PTNLD9-TUMOR_peak_29522 chr2 201631123 201631286 + 12.47100 NA intron (NR_001557, intron 19 of 30) intron (NR_001557, intron 19 of 30) -31304 NR_037886 100507140 Hs.382116 NR_037886 ENSG00000237166 LOC100507140 - uncharacterized LOC100507140 ncRNA 13-PTNLD9-TUMOR_peak_39901 chr4 177191906 177192078 + 12.47100 NA Intergenic Intergenic -1619 NM_080874 140458 Hs.591712 NM_080874 HPRD:10672 ASB5 ASB-5 ankyrin repeat and SOCS box containing 5 protein-coding 13-PTNLD9-TUMOR_peak_6348 chr10 4868729 4868911 + 12.47100 NA intron (NM_001271021, intron 1 of 7) CpG 451 NM_001040177 83592 Hs.657944 NM_031436 HPRD:07472 AKR1E2 AKR1CL2|AKRDC1|LoopADR|hTSP|htAKR aldo-keto reductase family 1, member E2 protein-coding 13-PTNLD9-TUMOR_peak_32241 chr21 36986957 36987182 + 12.47100 NA Intergenic LTR16E1|LTR|ERVL -34007 NR_073512 100506403 Hs.536609 NR_073512 ENSG00000159216 LOC100506403 - uncharacterized LOC100506403 ncRNA 13-PTNLD9-TUMOR_peak_38221 chr4 40336040 40336238 + 12.47100 NA Intergenic Intergenic -1207 NM_017581 55584 Hs.272278 NM_017581 HPRD:16092 CHRNA9 HSA243342|NACHRA9 cholinergic receptor, nicotinic, alpha 9 (neuronal) protein-coding 13-PTNLD9-TUMOR_peak_9021 chr11 9927589 9927791 + 12.47100 NA intron (NM_030962, intron 16 of 39) intron (NM_030962, intron 16 of 39) 67001 NR_120539 101928008 Hs.585524 NR_120539 ENSG00000255476 LOC101928008 - uncharacterized LOC101928008 ncRNA 13-PTNLD9-TUMOR_peak_32815 chr22 21258978 21259178 + 12.47100 NA Intergenic Intergenic -12636 NM_005207 1399 Hs.5613 NM_005207 HPRD:03596 CRKL - v-crk avian sarcoma virus CT10 oncogene homolog-like protein-coding 13-PTNLD9-TUMOR_peak_54434 chr9 113515144 113515331 + 12.47100 NA intron (NM_001166281, intron 7 of 11) intron (NM_001166281, intron 7 of 11) 84186 NM_001166280 4593 Hs.521653 NM_005592 HPRD:03190 MUSK - muscle, skeletal, receptor tyrosine kinase protein-coding 13-PTNLD9-TUMOR_peak_39543 chr4 146116862 146117003 + 12.47100 NA Intergenic Intergenic -16100 NM_001102653 54726 Hs.270851 NM_017493 HPRD:11033 OTUD4 DUBA6|HIN1|HSHIN1 OTU deubiquitinase 4 protein-coding 13-PTNLD9-TUMOR_peak_33145 chr22 32416122 32416497 + 12.47100 NA Intergenic Intergenic -22710 NM_000343 6523 Hs.1964 NM_000343 HPRD:01668 SLC5A1 D22S675|NAGT|SGLT1 solute carrier family 5 (sodium/glucose cotransporter), member 1 protein-coding 13-PTNLD9-TUMOR_peak_19760 chr16 74847114 74847254 + 12.47100 NA Intergenic Intergenic -38455 NM_024306 79152 Hs.461329 NM_024306 HPRD:16873 FA2H FAAH|FAH1|FAXDC1|SCS7|SPG35 fatty acid 2-hydroxylase protein-coding 13-PTNLD9-TUMOR_peak_34105 chr3 25469626 25469788 + 12.47100 NA promoter-TSS (NM_001290276) promoter-TSS (NM_001290276) -47 NM_001290266 5915 Hs.654490 NM_000965 HPRD:07183 RARB HAP|MCOPS12|NR1B2|RRB2 retinoic acid receptor, beta protein-coding 13-PTNLD9-TUMOR_peak_43755 chr6 10801598 10801719 + 12.47100 NA intron (NM_005906, intron 8 of 13) intron (NM_005906, intron 8 of 13) 37130 NM_001242957 4117 Hs.446125 NM_005906 HPRD:01101 MAK RP62|dJ417M14.2 male germ cell-associated kinase protein-coding 13-PTNLD9-TUMOR_peak_53624 chr9 74998989 74999126 + 12.47100 NA Intergenic L2a|LINE|L2 -18894 NM_006007 7763 Hs.406096 NM_006007 HPRD:05302 ZFAND5 ZA20D2|ZFAND5A|ZNF216 zinc finger, AN1-type domain 5 protein-coding 13-PTNLD9-TUMOR_peak_23451 chr18 71984138 71984325 + 12.47100 NA intron (NM_001174123, intron 1 of 13) intron (NM_001174123, intron 1 of 13) 1121 NM_001174123 644041 Hs.465414 NM_001174123 ENSG00000206043 C18orf63 DKFZP781G0119 chromosome 18 open reading frame 63 protein-coding 13-PTNLD9-TUMOR_peak_41962 chr5 127372798 127372906 + 12.47100 NA intron (NR_015360, intron 2 of 2) intron (NR_015360, intron 2 of 2) 45914 NR_015360 644873 Hs.340623 NR_015360 ENSG00000245937 LINC01184 - long intergenic non-protein coding RNA 1184 ncRNA 13-PTNLD9-TUMOR_peak_27539 chr2 88526987 88527318 + 12.47100 NA Intergenic Intergenic 54494 NM_018271 55258 Hs.739080 NM_018271 HPRD:07715 THNSL2 SOFAT|THS2|TSH2 threonine synthase-like 2 (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_38413 chr4 53719618 53719752 + 12.47100 NA Intergenic Intergenic -8810 NM_023940 65997 Hs.8035 NM_023940 HPRD:15216 RASL11B - RAS-like, family 11, member B protein-coding 13-PTNLD9-TUMOR_peak_52026 chr8 129401052 129401235 + 12.47100 NA Intergenic Intergenic 175782 NR_121672 101927774 Hs.628730 NR_121672 ENSG00000254275 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 13-PTNLD9-TUMOR_peak_24612 chr19 29452352 29452548 + 12.47100 NA Intergenic MLT1I|LTR|ERVL-MaLR -3588 NR_027318 148145 Hs.112651 NR_027318 ENSG00000267339 LINC00906 - long intergenic non-protein coding RNA 906 ncRNA 13-PTNLD9-TUMOR_peak_5331 chr1 209921154 209921366 + 12.47100 NA Intergenic CpG -8117 NM_025228 80342 Hs.147434 NM_025228 HPRD:16305 TRAF3IP3 T3JAM TRAF3 interacting protein 3 protein-coding 13-PTNLD9-TUMOR_peak_20412 chr17 7684899 7685060 + 12.47100 NA intron (NM_020877, intron 38 of 84) L2|LINE|L2 27341 NR_002778 118432 Hs.658086 NR_002778 RPL29P2 RPL29_10_1510 ribosomal protein L29 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_14883 chr13 77217751 77218019 + 12.47100 NA Intergenic Intergenic 242655 NM_138444 115207 Hs.644125 NM_138444 HPRD:11060 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 13-PTNLD9-TUMOR_peak_26110 chr2 10800102 10800224 + 12.47100 NA intron (NR_048552, intron 8 of 19) intron (NR_048552, intron 8 of 19) 29950 NM_024894 79954 Hs.222494 NM_024894 HPRD:07849 NOL10 PQBP5 nucleolar protein 10 protein-coding 13-PTNLD9-TUMOR_peak_30299 chr20 2795339 2795596 + 12.47100 NA promoter-TSS (NM_080739) promoter-TSS (NM_080739) -166 NM_001256538 128653 Hs.352187 NM_080739 HPRD:12748 C20orf141 dJ860F19.4 chromosome 20 open reading frame 141 protein-coding 13-PTNLD9-TUMOR_peak_54604 chr9 121094117 121094241 + 12.47100 NA Intergenic Intergenic 627726 NM_138554 7099 Hs.174312 NM_003266 HPRD:04325 TLR4 ARMD10|CD284|TLR-4|TOLL toll-like receptor 4 protein-coding 13-PTNLD9-TUMOR_peak_3068 chr1 119995796 119995998 + 12.47100 NA Intergenic Intergenic 38154 NM_000198 3284 Hs.654399 NM_000198 HPRD:01941 HSD3B2 HSD3B|HSDB|SDR11E2 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2 protein-coding 13-PTNLD9-TUMOR_peak_6837 chr10 30799632 30799771 + 12.47100 NA Intergenic Intergenic 76751 NM_005204 1326 Hs.432453 NM_005204 HPRD:01863 MAP3K8 COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT mitogen-activated protein kinase kinase kinase 8 protein-coding 13-PTNLD9-TUMOR_peak_20630 chr17 19230408 19230697 + 12.47100 NA intron (NM_014964, intron 7 of 10) L1ME3D|LINE|L1 17335 NR_031591 100302256 NR_031591 MIR1180 MIRN1180|hsa-mir-1180 microRNA 1180 ncRNA 13-PTNLD9-TUMOR_peak_18108 chr15 101763758 101763930 + 12.47100 NA intron (NM_014918, intron 2 of 2) intron (NM_014918, intron 2 of 2) 28293 NM_014918 22856 Hs.110488 NM_014918 HPRD:10493 CHSY1 CHSY|CSS1|ChSy-1|TPBS chondroitin sulfate synthase 1 protein-coding 13-PTNLD9-TUMOR_peak_10709 chr11 77271209 77271340 + 12.47100 NA Intergenic FordPrefect|DNA|hAT-Tip100 -29406 NM_173039 282679 Hs.503345 NM_173039 HPRD:16503 AQP11 AQPX1 aquaporin 11 protein-coding 13-PTNLD9-TUMOR_peak_3615 chr1 151416469 151416600 + 12.47100 NA intron (NM_001194937, intron 1 of 18) MER119|DNA|hAT-Charlie -1853 NM_207171 23126 Hs.489873 NM_015100 HPRD:11445 POGZ ZNF280E|ZNF635|ZNF635m pogo transposable element with ZNF domain protein-coding 13-PTNLD9-TUMOR_peak_41316 chr5 74965051 74965154 + 12.47100 NA exon (NM_001276713, exon 13 of 14) exon (NM_001276713, exon 13 of 14) 43178 NM_152408 134359 Hs.432726 NM_152408 HPRD:08188 POC5 C5orf37 POC5 centriolar protein protein-coding 13-PTNLD9-TUMOR_peak_5750 chr1 229099974 229100131 + 12.47100 NA Intergenic Intergenic 229228 NM_021205 58480 Hs.647774 NM_021205 HPRD:06965 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 13-PTNLD9-TUMOR_peak_22889 chr18 30241945 30242143 + 12.47100 NA Intergenic LTR78B|LTR|ERV1 110930 NM_020805 57565 Hs.446164 NM_020805 HPRD:17238 KLHL14 - kelch-like family member 14 protein-coding 13-PTNLD9-TUMOR_peak_48796 chr7 107685724 107685874 + 12.47100 NA intron (NM_007356, intron 28 of 33) intron (NM_007356, intron 28 of 33) -41995 NM_002291 3912 Hs.650585 NM_002291 HPRD:01029 LAMB1 CLM|LIS5 laminin, beta 1 protein-coding 13-PTNLD9-TUMOR_peak_894 chr1 29598335 29598458 + 12.47100 NA intron (NM_133177, intron 7 of 30) intron (NM_133177, intron 7 of 30) 35368 NM_001195001 10076 Hs.19718 NM_005704 HPRD:03908 PTPRU FMI|PCP-2|PTP|PTP-J|PTP-PI|PTP-RO|PTPPSI|PTPRO|PTPU2|R-PTP-PSI|R-PTP-U|hPTP-J protein tyrosine phosphatase, receptor type, U protein-coding 13-PTNLD9-TUMOR_peak_21717 chr17 60970443 60970630 + 12.47100 NA intron (NR_036146, intron 3 of 3) intron (NR_036146, intron 3 of 3) -84794 NM_152598 162333 Hs.665663 NM_152598 HPRD:08762 MARCH10 MARCH-X|RNF190 membrane-associated ring finger (C3HC4) 10, E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_19614 chr16 67951930 67952064 + 12.47100 NA intron (NM_006742, intron 2 of 2) L3|LINE|CR1 13781 NM_001907 1506 Hs.654546 NM_001907 CTRL CTRL1 chymotrypsin-like protein-coding 13-PTNLD9-TUMOR_peak_54232 chr9 102729090 102729244 + 12.47100 NA intron (NM_017919, intron 6 of 7) L3|LINE|CR1 60252 NM_017919 55014 Hs.704031 NM_017919 STX17 - syntaxin 17 protein-coding 13-PTNLD9-TUMOR_peak_29829 chr2 219208476 219208610 + 12.47100 NA intron (NM_022572, intron 7 of 8) intron (NM_022572, intron 7 of 8) 1909 NR_106868 102466197 NR_106868 MIR6810 hsa-mir-6810 microRNA 6810 ncRNA 13-PTNLD9-TUMOR_peak_55003 chr9 137341523 137341696 + 12.47100 NA Intergenic Intergenic 43181 NM_001291921 6256 Hs.590886 NM_002957 RXRA NR2B1 retinoid X receptor, alpha protein-coding 13-PTNLD9-TUMOR_peak_8377 chr10 116006770 116006988 + 12.47100 NA intron (NM_001272046, intron 1 of 13) intron (NM_001272046, intron 1 of 13) 7866 NM_001272046 340706 Hs.197741 NM_198496 VWA2 AMACO|CCSP-2|NET42 von Willebrand factor A domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_56613 chrX 150042185 150042371 + 12.47100 NA intron (NM_031462, intron 1 of 10) intron (NM_031462, intron 1 of 10) 25011 NM_001184808 83692 Hs.522805 NM_031462 ENSG00000102181 CD99L2 CD99B|MIC2L1 CD99 molecule-like 2 protein-coding 13-PTNLD9-TUMOR_peak_3031 chr1 117780447 117780579 + 12.47100 NA Intergenic Intergenic -26931 NR_045604 79679 Hs.546434 NM_024626 HPRD:06429 VTCN1 B7-H4|B7H4|B7S1|B7X|B7h.5|PRO1291|VCTN1 V-set domain containing T cell activation inhibitor 1 protein-coding 13-PTNLD9-TUMOR_peak_50901 chr8 49549828 49550089 + 12.47100 NA intron (NR_105002, intron 2 of 3) L1MC3|LINE|L1 16995 NR_105004 101929217 Hs.547790 NR_105004 ENSG00000253455 LOC101929217 - uncharacterized LOC101929217 ncRNA 13-PTNLD9-TUMOR_peak_14750 chr13 49887965 49888359 + 12.47100 NA intron (NM_001287339, intron 9 of 9) intron (NM_001287339, intron 9 of 9) 66115 NM_030911 81602 Hs.388220 NM_030911 HPRD:16693 CDADC1 NYD-SP15|bA103J18.1 cytidine and dCMP deaminase domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_16452 chr14 92159790 92160021 + 12.47100 NA intron (NM_024764, intron 7 of 26) intron (NM_024764, intron 7 of 26) 38508 NM_024764 79820 Hs.131755 NM_024764 HPRD:16613 CATSPERB C14orf161|CatSper(beta) catsper channel auxiliary subunit beta protein-coding 13-PTNLD9-TUMOR_peak_31971 chr21 17936161 17936443 + 12.47100 NA intron (NR_111005, intron 6 of 6) intron (NR_111005, intron 6 of 6) 24154 NR_029480 406885 NR_029480 miRBase:MI0000064 MIRLET7C LET7C|MIRNLET7C|hsa-let-7c|let-7c microRNA let-7c ncRNA 13-PTNLD9-TUMOR_peak_12790 chr12 52208198 52208368 + 12.47100 NA Intergenic CpG 17418 NM_001013690 401720 Hs.648218 NM_001013690 FIGNL2 - fidgetin-like 2 protein-coding 13-PTNLD9-TUMOR_peak_26474 chr2 29971096 29971257 + 12.47100 NA intron (NM_004304, intron 1 of 28) intron (NM_004304, intron 1 of 28) 173301 NM_004304 238 Hs.654469 NM_004304 HPRD:00104 ALK CD246|NBLST3 anaplastic lymphoma receptor tyrosine kinase protein-coding 13-PTNLD9-TUMOR_peak_14387 chr13 20933590 20933765 + 12.47100 NA Intergenic L1MB7|LINE|L1 74308 NR_039721 100616304 NR_039721 MIR4499 - microRNA 4499 ncRNA 13-PTNLD9-TUMOR_peak_45396 chr6 57132871 57133083 + 12.47100 NA Intergenic Intergenic -4833 NR_109774 100506188 Hs.485640 NR_109774 LOC100506188 - uncharacterized LOC100506188 ncRNA 13-PTNLD9-TUMOR_peak_30088 chr2 236367563 236367774 + 12.47100 NA Intergenic AluJo|SINE|Alu -35065 NM_001037131 116987 Hs.435039 NM_014914 HPRD:16359 AGAP1 AGAP-1|CENTG2|GGAP1|cnt-g2 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 protein-coding 13-PTNLD9-TUMOR_peak_45447 chr6 69800125 69800280 + 12.47100 NA intron (NM_001704, intron 17 of 31) intron (NM_001704, intron 17 of 31) 454570 NM_001704 577 Hs.13261 NM_001704 HPRD:04064 BAI3 - brain-specific angiogenesis inhibitor 3 protein-coding 13-PTNLD9-TUMOR_peak_43258 chr5 177945821 177946101 + 12.47100 NA intron (NM_173465, intron 2 of 28) CpG 71595 NM_173465 91522 Hs.660026 NM_173465 HPRD:16733 COL23A1 - collagen, type XXIII, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_29140 chr2 175128831 175129012 + 12.47100 NA Intergenic MER44D|DNA|TcMar-Tigger -15556 NM_013341 29789 Hs.157351 NM_013341 HPRD:15194 OLA1 DOC45|GBP45|GTBP9|GTPBP9 Obg-like ATPase 1 protein-coding 13-PTNLD9-TUMOR_peak_32290 chr21 38919352 38919601 + 12.47100 NA Intergenic Intergenic 126874 NM_001396 1859 Hs.368240 NM_001396 HPRD:09018 DYRK1A DYRK|DYRK1|HP86|MNB|MNBH|MRD7 dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A protein-coding 13-PTNLD9-TUMOR_peak_26968 chr2 55818038 55818182 + 12.47100 NA intron (NM_001282850, intron 4 of 15) intron (NM_001282850, intron 4 of 15) 26750 NM_001122964 57223 Hs.516182 NM_020463 HPRD:13854 SMEK2 FLFL2|PP4R3B|PSY2|smk1 SMEK homolog 2, suppressor of mek1 (Dictyostelium) protein-coding 13-PTNLD9-TUMOR_peak_6355 chr10 5359620 5359887 + 12.47100 NA Intergenic Intergenic -47223 NM_053049 114131 Hs.511775 NM_053049 HPRD:12066 UCN3 SCP|SPC|UCNIII urocortin 3 protein-coding 13-PTNLD9-TUMOR_peak_47826 chr7 71240725 71240888 + 12.47100 NA Intergenic MER5B|DNA|hAT-Charlie -468050 NR_037477 100500836 NR_037477 miRBase:MI0016419 MIR3914-1 - microRNA 3914-1 ncRNA 13-PTNLD9-TUMOR_peak_23108 chr18 45712943 45713093 + 12.47100 NA Intergenic Intergenic -49338 NM_001039360 201501 Hs.515388 NM_001039360 ENSG00000184828 ZBTB7C APM-1|APM1|ZBTB36|ZNF857C zinc finger and BTB domain containing 7C protein-coding 13-PTNLD9-TUMOR_peak_16601 chr14 102447071 102447266 + 12.47100 NA intron (NM_001376, intron 5 of 77) intron (NM_001376, intron 5 of 77) 16303 NM_001376 1778 Hs.614080 NM_001376 HPRD:02524 DYNC1H1 DHC1|DHC1a|DNCH1|DNCL|DNECL|DYHC|Dnchc1|HL-3|SMALED1|p22 dynein, cytoplasmic 1, heavy chain 1 protein-coding 13-PTNLD9-TUMOR_peak_46404 chr6 157849872 157850105 + 12.47100 NA intron (NM_153746, intron 1 of 8) intron (NM_153746, intron 1 of 8) 47431 NM_024630 79683 Hs.596214 NM_024630 HPRD:15711 ZDHHC14 NEW1CP zinc finger, DHHC-type containing 14 protein-coding 13-PTNLD9-TUMOR_peak_27540 chr2 88565234 88565377 + 12.47100 NA Intergenic Intergenic 92647 NM_018271 55258 Hs.739080 NM_018271 HPRD:07715 THNSL2 SOFAT|THS2|TSH2 threonine synthase-like 2 (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_16396 chr14 88851923 88852096 + 12.47100 NA promoter-TSS (NM_018418) promoter-TSS (NM_018418) 21 NM_001040428 55812 Hs.525518 NM_018418 HPRD:15431 SPATA7 HEL-S-296|HSD-3.1|HSD3|LCA3 spermatogenesis associated 7 protein-coding 13-PTNLD9-TUMOR_peak_30130 chr2 239045944 239046100 + 12.47100 NA Intergenic (GGCTG)n|Simple_repeat|Simple_repeat -1341 NM_198582 377007 Hs.591595 NM_198582 HPRD:13472 KLHL30 - kelch-like family member 30 protein-coding 13-PTNLD9-TUMOR_peak_27452 chr2 85956181 85956340 + 12.47100 NA Intergenic Intergenic -24649 NM_032827 84913 Hs.135569 NM_032827 ATOH8 HATH6|bHLHa21 atonal homolog 8 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_10637 chr11 74915999 74916214 + 12.47100 NA 3' UTR (NM_007256, exon 14 of 14) 3' UTR (NM_007256, exon 14 of 14) -35844 NM_001195528 100507050 Hs.577323 NM_001195528 ENSG00000261594 TPBGL - trophoblast glycoprotein-like protein-coding 13-PTNLD9-TUMOR_peak_43402 chr6 1104235 1104477 + 12.47100 NA Intergenic Intergenic -2789 NR_027115 285768 Hs.209463 NR_027115 LOC285768 - uncharacterized LOC285768 ncRNA 13-PTNLD9-TUMOR_peak_50595 chr8 36892298 36892423 + 12.47100 NA Intergenic MIR3|SINE|MIR 250518 NM_001031836 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium channel, subfamily U, member 1 protein-coding 13-PTNLD9-TUMOR_peak_21363 chr17 46583335 46583490 + 12.47100 NA Intergenic Intergenic 24860 NM_002144 3211 Hs.99992 NM_002144 HOXB1 HCFP3|HOX2|HOX2I|Hox-2.9 homeobox B1 protein-coding 13-PTNLD9-TUMOR_peak_18485 chr16 10522778 10522901 + 12.47100 NA non-coding (NR_045815, exon 1 of 10) non-coding (NR_045815, exon 1 of 10) 114 NR_045815 80063 Hs.513343 NM_024997 HPRD:16517 ATF7IP2 MCAF2 activating transcription factor 7 interacting protein 2 protein-coding 13-PTNLD9-TUMOR_peak_29509 chr2 201397332 201397488 + 12.47100 NA intron (NM_152524, intron 1 of 8) L2c|LINE|L2 6545 NM_001160033 151246 Hs.655182 NM_152524 HPRD:11555 SGOL2 SGO2|TRIPIN shugoshin-like 2 (S. pombe) protein-coding 13-PTNLD9-TUMOR_peak_38175 chr4 37664851 37665009 + 12.47100 NA intron (NM_001085400, intron 1 of 6) intron (NM_001085400, intron 1 of 6) 23069 NM_001085399 768211 Hs.283378 NM_001085399 ENSG00000181826 RELL1 - RELT-like 1 protein-coding 13-PTNLD9-TUMOR_peak_12355 chr12 26555645 26555795 + 12.47100 NA intron (NM_002223, intron 52 of 56) MamRep605|Unknown|Unknown 207214 NM_005086 8082 Hs.183428 NM_005086 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 13-PTNLD9-TUMOR_peak_46101 chr6 135246997 135247329 + 12.47100 NA intron (NM_170771, intron 5 of 5) L2a|LINE|L2 24097 NM_170771 64577 Hs.486520 NM_022568 HPRD:06974 ALDH8A1 ALDH12|DJ352A20.2 aldehyde dehydrogenase 8 family, member A1 protein-coding 13-PTNLD9-TUMOR_peak_45763 chr6 94494960 94495143 + 12.47100 NA Intergenic Intergenic 78250 NR_015362 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 13-PTNLD9-TUMOR_peak_32441 chr21 44093060 44093350 + 12.47100 NA intron (NM_001001575, intron 1 of 14) intron (NM_001001575, intron 1 of 14) 19343 NM_001001572 5152 Hs.473927 NM_002606 HPRD:09115 PDE9A HSPDE9A2 phosphodiesterase 9A protein-coding 13-PTNLD9-TUMOR_peak_11233 chr11 112408788 112409052 + 12.47100 NA intron (NR_104155, intron 3 of 3) MLT2C2|LTR|ERVL 17605 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LOC387810 - uncharacterized LOC387810 ncRNA 13-PTNLD9-TUMOR_peak_29520 chr2 201621787 201621927 + 12.47100 NA intron (NR_001557, intron 15 of 30) intron (NR_001557, intron 15 of 30) -21957 NR_037886 100507140 Hs.382116 NR_037886 ENSG00000237166 LOC100507140 - uncharacterized LOC100507140 ncRNA 13-PTNLD9-TUMOR_peak_15408 chr14 25330300 25330515 + 12.47100 NA intron (NM_014178, intron 2 of 5) intron (NM_014178, intron 2 of 5) 188688 NM_014178 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 amisyn syntaxin binding protein 6 (amisyn) protein-coding 13-PTNLD9-TUMOR_peak_40987 chr5 58858919 58859112 + 12.47100 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) 23309 NM_006203 5144 Hs.117545 NM_006203 HPRD:02530 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D, cAMP-specific protein-coding 13-PTNLD9-TUMOR_peak_45354 chr6 53820982 53821151 + 12.47100 NA Intergenic Intergenic -42622 NR_046832 100874282 Hs.571169 NR_046832 ENSG00000236996 MLIP-IT1 - MLIP intronic transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_32018 chr21 25418226 25418523 + 12.47100 NA Intergenic MLT1H|LTR|ERVL-MaLR 275316 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LOC101927869 - uncharacterized LOC101927869 ncRNA 13-PTNLD9-TUMOR_peak_29146 chr2 175307678 175307832 + 12.47100 NA intron (NM_001267050, intron 14 of 16) intron (NM_001267050, intron 14 of 16) 44061 NM_001267050 151556 Hs.516604 NM_152529 HPRD:17066 GPR155 DEP.7|DEPDC3|PGR22 G protein-coupled receptor 155 protein-coding 13-PTNLD9-TUMOR_peak_20905 chr17 34842391 34842558 + 12.47100 NA promoter-TSS (NM_001281433) promoter-TSS (NM_001281433) 3 NR_104009 9326 Hs.2210 NM_004773 HPRD:05139 ZNHIT3 TRIP3 zinc finger, HIT-type containing 3 protein-coding 13-PTNLD9-TUMOR_peak_16528 chr14 97746932 97747097 + 12.47100 NA Intergenic L2b|LINE|L2 -178139 NR_110165 101929241 Hs.650839 NR_110165 ENSG00000246084 LOC101929241 - uncharacterized LOC101929241 ncRNA 13-PTNLD9-TUMOR_peak_5355 chr1 212408121 212408304 + 12.47100 NA Intergenic Intergenic -50667 NM_006243 5525 Hs.744012 NM_006243 HPRD:03384 PPP2R5A B56A|PR61A protein phosphatase 2, regulatory subunit B', alpha protein-coding 13-PTNLD9-TUMOR_peak_16007 chr14 64685170 64685415 + 12.47100 NA intron (NM_182914, intron 109 of 115) intron (NM_182914, intron 109 of 115) 2620 NM_182910 23224 Hs.745014 NM_015180 HPRD:09763 SYNE2 EDMD5|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing, nuclear envelope 2 protein-coding 13-PTNLD9-TUMOR_peak_4846 chr1 193940834 193941057 + 12.47100 NA Intergenic Intergenic 667070 NR_125789 101929184 Hs.146728 NR_125789 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 13-PTNLD9-TUMOR_peak_35432 chr3 114119645 114119904 + 12.47100 NA intron (NM_015642, intron 6 of 9) intron (NM_015642, intron 6 of 9) -17285 NM_001164342 26137 Hs.202577 NM_015642 HPRD:05822 ZBTB20 DPZF|HOF|ODA-8S|ZNF288 zinc finger and BTB domain containing 20 protein-coding 13-PTNLD9-TUMOR_peak_15435 chr14 30760528 30760746 + 12.47100 NA Intergenic MIR|SINE|MIR -267692 NM_017769 55632 Hs.509008 NM_017769 HPRD:13851 G2E3 KIAA1333|PHF7B G2/M-phase specific E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_40952 chr5 56989017 56989168 + 12.47100 NA Intergenic Intergenic 42605 NR_104668 101928505 Hs.119998 NR_104668 LOC101928505 - uncharacterized LOC101928505 ncRNA 13-PTNLD9-TUMOR_peak_29188 chr2 178008233 178008371 + 12.47100 NA Intergenic Intergenic -69120 NM_194247 220988 Hs.516539 NM_194247 ENSG00000170144 HNRNPA3 2610510D13Rik|D10S102|FBRNP|HNRPA3 heterogeneous nuclear ribonucleoprotein A3 protein-coding 13-PTNLD9-TUMOR_peak_15793 chr14 53937198 53937344 + 12.47100 NA Intergenic L1M1|LINE|L1 317199 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 13-PTNLD9-TUMOR_peak_47185 chr7 31014514 31014668 + 12.47100 NA exon (NM_000823, exon 9 of 13) exon (NM_000823, exon 9 of 13) 10955 NM_000823 2692 Hs.767 NM_000823 HPRD:00748 GHRHR GHRFR|GRFR|IGHD1B growth hormone releasing hormone receptor protein-coding 13-PTNLD9-TUMOR_peak_34146 chr3 28891656 28891898 + 12.47100 NA Intergenic MLT1K|LTR|ERVL-MaLR 275008 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 13-PTNLD9-TUMOR_peak_50177 chr8 18007008 18007205 + 12.47100 NA Intergenic L1M3c|LINE|L1 -20865 NM_001291962 9 Hs.591847 NM_000662 HPRD:00149 NAT1 AAC1|MNAT|NAT-1|NATI N-acetyltransferase 1 (arylamine N-acetyltransferase) protein-coding 13-PTNLD9-TUMOR_peak_54937 chr9 133837919 133838268 + 12.47100 NA Intergenic Intergenic -23638 NM_001145106 84929 Hs.133205 NM_032843 HPRD:16895 FIBCD1 - fibrinogen C domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_30210 chr2 242549734 242549948 + 12.47100 NA intron (NM_015963, intron 2 of 5) CpG 7075 NM_001164356 51078 Hs.435759 NM_015963 HPRD:11630 THAP4 PP238 THAP domain containing 4 protein-coding 13-PTNLD9-TUMOR_peak_29215 chr2 178837709 178837855 + 12.47100 NA intron (NM_001077197, intron 3 of 20) intron (NM_001077197, intron 3 of 20) -50218 NM_001077358 50940 Hs.570273 NM_016953 HPRD:05391 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 13-PTNLD9-TUMOR_peak_15440 chr14 31159808 31159999 + 12.47100 NA intron (NM_001283033, intron 11 of 21) L1HS|LINE|L1 68378 NM_001257376 23256 Hs.369168 NM_016106 HPRD:10210 SCFD1 C14orf163|RA410|SLY1|SLY1P|STXBP1L2 sec1 family domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_26300 chr2 23724932 23725223 + 12.47100 NA intron (NM_052920, intron 2 of 13) intron (NM_052920, intron 2 of 13) 116779 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch-like family member 29 protein-coding 13-PTNLD9-TUMOR_peak_21144 chr17 41956039 41956202 + 12.47100 NA intron (NM_001278370, intron 12 of 12) intron (NM_001278370, intron 12 of 12) 21881 NM_001278376 4355 Hs.514208 NM_005374 HPRD:02837 MPP2 DLG2 membrane protein, palmitoylated 2 (MAGUK p55 subfamily member 2) protein-coding 13-PTNLD9-TUMOR_peak_29890 chr2 221712333 221712764 + 12.47100 NA Intergenic Intergenic 724462 NM_004438 2043 Hs.371218 NM_004438 HPRD:03719 EPHA4 HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 13-PTNLD9-TUMOR_peak_35646 chr3 124564403 124564598 + 12.47100 NA intron (NM_002213, intron 4 of 14) intron (NM_002213, intron 4 of 14) 41644 NM_002213 3693 Hs.536663 NM_002213 HPRD:00949 ITGB5 - integrin, beta 5 protein-coding 13-PTNLD9-TUMOR_peak_30516 chr20 17891565 17891938 + 12.47100 NA Intergenic MER66D|LTR|ERV1 51838 NR_003045 692086 Hs.680747 NR_003045 SNORD17 HBI-43 small nucleolar RNA, C/D box 17 snoRNA 13-PTNLD9-TUMOR_peak_27177 chr2 69828358 69828556 + 12.47100 NA intron (NM_014911, intron 2 of 21) intron (NM_014911, intron 2 of 21) 42520 NM_014911 22848 Hs.468878 NM_014911 AAK1 - AP2 associated kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_8821 chr11 2713950 2714092 + 12.47100 NA non-coding (NR_002728, exon 1 of 1) non-coding (NR_002728, exon 1 of 1) 7207 NR_002728 10984 Hs.604823 NR_002728 ENSG00000269821 KCNQ1OT1 KCNQ1-AS2|KCNQ10T1|KvDMR1|KvLQT1-AS|LIT1|NCRNA00012 KCNQ1 opposite strand/antisense transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_30078 chr2 235749034 235749185 + 12.47100 NA Intergenic Intergenic -111519 NM_014521 23677 Hs.516777 NM_014521 HPRD:09285 SH3BP4 BOG25|TTP SH3-domain binding protein 4 protein-coding 13-PTNLD9-TUMOR_peak_22921 chr18 33058611 33058782 + 12.47100 NA intron (NM_001098817, intron 5 of 6) intron (NM_001098817, intron 5 of 6) 19259 NM_001098817 125476 Hs.464903 NM_194281 HPRD:10719 INO80C C18orf37|IES6|hIes6 INO80 complex subunit C protein-coding 13-PTNLD9-TUMOR_peak_4988 chr1 201865166 201865296 + 12.47100 NA TTS (NM_012134) TTS (NM_012134) 7426 NM_198149 149345 Hs.632471 NM_198149 HPRD:12729 SHISA4 C1orf40|TMEM58 shisa family member 4 protein-coding 13-PTNLD9-TUMOR_peak_45357 chr6 54284775 54284947 + 12.47100 NA Intergenic Intergenic 111658 NM_014464 27283 Hs.127011 NM_014464 HPRD:09483 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 13-PTNLD9-TUMOR_peak_17550 chr15 70145983 70146164 + 12.47100 NA Intergenic Intergenic 18500 NR_026764 414926 Hs.569502 NR_026764 ENSG00000259703 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 13-PTNLD9-TUMOR_peak_29910 chr2 224477934 224478062 + 12.47100 NA Intergenic Intergenic -10781 NM_003469 7857 Hs.516726 NM_003469 HPRD:06762 SCG2 CHGC|EM66|SN|SgII secretogranin II protein-coding 13-PTNLD9-TUMOR_peak_41021 chr5 60968889 60969068 + 12.47100 NA intron (NR_109910, intron 6 of 7) intron (NR_109910, intron 6 of 7) 25281 NR_109910 101928651 Hs.662309 NR_109910 ENSG00000248529 LOC101928651 - uncharacterized LOC101928651 ncRNA 13-PTNLD9-TUMOR_peak_11492 chr11 123545132 123545295 + 12.47100 NA Intergenic Intergenic -19898 NM_001040151 55800 Hs.4865 NM_018400 HPRD:10497 SCN3B ATFB16|BRGDA7|HSA243396|SCNB3 sodium channel, voltage-gated, type III, beta subunit protein-coding 13-PTNLD9-TUMOR_peak_10788 chr11 82762837 82763102 + 12.47100 NA intron (NM_014488, intron 1 of 5) intron (NM_014488, intron 1 of 5) -10329 NR_033347 100379250 Hs.725115 NR_033347 ENSG00000207221 SNORA70E U70E small nucleolar RNA, H/ACA box 70E snoRNA 13-PTNLD9-TUMOR_peak_9684 chr11 46087984 46088143 + 12.47100 NA intron (NM_001101802, intron 5 of 17) AluJr|SINE|Alu 54922 NM_001101802 51317 Hs.502458 NM_016621 ENSG00000135365 PHF21A BHC80 PHD finger protein 21A protein-coding 13-PTNLD9-TUMOR_peak_22521 chr18 7812505 7812740 + 12.47100 NA intron (NM_001105244, intron 2 of 32) intron (NM_001105244, intron 2 of 32) 245308 NM_001105244 5797 Hs.49774 NM_002845 HPRD:01479 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase, receptor type, M protein-coding 13-PTNLD9-TUMOR_peak_54234 chr9 102850605 102850822 + 12.47100 NA intron (NM_015051, intron 1 of 11) L2a|LINE|L2 10617 NM_015051 23071 Hs.154023 NM_015051 HPRD:10290 ERP44 PDIA10|TXNDC4 endoplasmic reticulum protein 44 protein-coding 13-PTNLD9-TUMOR_peak_40892 chr5 55147082 55147212 + 12.47100 NA promoter-TSS (NM_139017) promoter-TSS (NM_139017) -60 NM_001242638 133396 Hs.55378 NM_139017 HPRD:17145 IL31RA CRL|CRL3|GLM-R|GLMR|GPL|IL-31RA|PLCA2|PRO21384|hGLM-R interleukin 31 receptor A protein-coding 13-PTNLD9-TUMOR_peak_14434 chr13 24530367 24530513 + 12.47100 NA Intergenic Intergenic -6986 NR_073430 400110 Hs.744780 NM_207439 ANKRD20A19P - ankyrin repeat domain 20 family, member A19, pseudogene pseudo 13-PTNLD9-TUMOR_peak_31168 chr20 43786682 43786995 + 12.47100 NA Intergenic L1M3de|LINE|L1 -16702 NM_002638 5266 Hs.112341 NM_002638 HPRD:15947 PI3 ESI|SKALP|WAP3|WFDC14|cementoin peptidase inhibitor 3, skin-derived protein-coding 13-PTNLD9-TUMOR_peak_55502 chrX 7364983 7365174 + 12.47100 NA Intergenic MER5A|DNA|hAT-Charlie 227606 NM_000351 412 Hs.522578 NM_000351 HPRD:02389 STS ARSC|ARSC1|ASC|ES|SSDD|XLI steroid sulfatase (microsomal), isozyme S protein-coding 13-PTNLD9-TUMOR_peak_14578 chr13 34295993 34296202 + 12.47100 NA Intergenic Intergenic -45125 NM_001243476 90627 Hs.156551 NM_052851 HPRD:11607 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR-related lipid transfer (START) domain containing 13 protein-coding 13-PTNLD9-TUMOR_peak_16996 chr15 33877116 33877292 + 12.47100 NA intron (NM_001243996, intron 15 of 102) intron (NM_001243996, intron 15 of 102) 274027 NM_001243996 6263 Hs.709373 NM_001036 HPRD:01620 RYR3 RYR-3 ryanodine receptor 3 protein-coding 13-PTNLD9-TUMOR_peak_39005 chr4 105649689 105649870 + 12.47100 NA Intergenic Intergenic -233721 NM_025212 80319 Hs.12248 NM_025212 HPRD:16773 CXXC4 IDAX CXXC finger protein 4 protein-coding 13-PTNLD9-TUMOR_peak_25151 chr19 46133879 46134009 + 12.47100 NA intron (NM_001193268, intron 9 of 21) ORSL-2b|DNA|hAT-Tip100 8401 NR_029886 442902 NR_029886 MIR330 MIRN330|hsa-mir-330 microRNA 330 ncRNA 13-PTNLD9-TUMOR_peak_39305 chr4 128553912 128554231 + 12.47100 NA promoter-TSS (NM_015693) promoter-TSS (NM_015693) -16 NM_015693 27152 Hs.391481 NM_015693 INTU INT|PDZD6|PDZK6 inturned planar cell polarity protein protein-coding 13-PTNLD9-TUMOR_peak_2249 chr1 78567359 78567530 + 12.47100 NA intron (NM_017655, intron 3 of 5) intron (NM_017655, intron 3 of 5) 55855 NM_017655 54810 Hs.659356 NM_017655 GIPC2 SEMCAP-2|SEMCAP2 GIPC PDZ domain containing family, member 2 protein-coding 13-PTNLD9-TUMOR_peak_28667 chr2 148036602 148036750 + 12.47100 NA Intergenic Intergenic -565410 NM_001278580 92 Hs.470174 NM_001616 HPRD:00025 ACVR2A ACTRII|ACVR2 activin A receptor, type IIA protein-coding 13-PTNLD9-TUMOR_peak_46753 chr7 4199436 4199690 + 12.47100 NA intron (NM_152744, intron 31 of 44) MER2B|DNA|TcMar-Tigger 30246 NM_001079653 221935 Hs.653013 NM_152744 HPRD:07388 SDK1 - sidekick cell adhesion molecule 1 protein-coding 13-PTNLD9-TUMOR_peak_18776 chr16 23297430 23297729 + 12.47100 NA Intergenic L1MC4|LINE|L1 -16012 NM_000336 6338 Hs.414614 NM_000336 HPRD:02861 SCNN1B BESC1|ENaCb|ENaCbeta|SCNEB sodium channel, non-voltage-gated 1, beta subunit protein-coding 13-PTNLD9-TUMOR_peak_43617 chr6 5542350 5542516 + 12.47100 NA intron (NM_006567, intron 4 of 6) MER41B|LTR|ERV1 153072 NR_110842 101927950 Hs.571136 NR_110842 ENSG00000270174 LOC101927950 - uncharacterized LOC101927950 ncRNA 13-PTNLD9-TUMOR_peak_2289 chr1 83597388 83597562 + 12.47100 NA Intergenic Intergenic -145584 NR_110633 101927498 NR_110632 ENSG00000236268 LINC01361 - long intergenic non-protein coding RNA 1361 ncRNA 13-PTNLD9-TUMOR_peak_7589 chr10 70997474 70997576 + 12.47100 NA intron (NM_025130, intron 4 of 17) MIRc|SINE|MIR -5279 NR_120648 101928994 Hs.562925 NR_120648 ENSG00000229261 LOC101928994 - uncharacterized LOC101928994 ncRNA 13-PTNLD9-TUMOR_peak_12472 chr12 32589997 32590287 + 12.47100 NA Intergenic Intergenic -64899 NM_139241 121512 Hs.117835 NM_139241 HPRD:16891 FGD4 CMT4H|FRABP|ZFYVE6 FYVE, RhoGEF and PH domain containing 4 protein-coding 13-PTNLD9-TUMOR_peak_44485 chr6 30796312 30796571 + 12.47100 NA Intergenic Intergenic -53949 NM_001297652 780 Hs.631988 NM_001954 HPRD:02678 DDR1 CAK|CD167|DDR|EDDR1|HGK2|MCK10|NEP|NTRK4|PTK3|PTK3A|RTK6|TRKE discoidin domain receptor tyrosine kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_33270 chr22 39114530 39114681 + 12.47100 NA intron (NM_004286, intron 4 of 11) intron (NM_004286, intron 4 of 11) 12798 NM_004286 9567 Hs.276925 NM_004286 HPRD:03765 GTPBP1 GP-1|GP1|HSPC018 GTP binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_9954 chr11 59724757 59724911 + 12.47100 NA Intergenic Intergenic -82914 NM_173801 219990 Hs.132310 NM_173801 HPRD:08207 OOSP2 PLAC1L|TMEM122 oocyte secreted protein 2 protein-coding 13-PTNLD9-TUMOR_peak_56288 chrX 102407204 102407414 + 12.47100 NA Intergenic AluJb|SINE|Alu -59287 NM_022052 56000 Hs.60386 NM_022052 HPRD:02261 NXF3 - nuclear RNA export factor 3 protein-coding 13-PTNLD9-TUMOR_peak_6809 chr10 30073405 30073646 + 12.47100 NA Intergenic Intergenic -48795 NM_003174 6840 Hs.499209 NM_003174 HPRD:04992 SVIL - supervillin protein-coding 13-PTNLD9-TUMOR_peak_33035 chr22 27908462 27908572 + 12.47100 NA Intergenic Intergenic 288969 NM_002430 4330 Hs.268515 NM_002430 HPRD:08862 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 meningioma (disrupted in balanced translocation) 1 protein-coding 13-PTNLD9-TUMOR_peak_5152 chr1 204449158 204449267 + 12.47100 NA intron (NM_002646, intron 2 of 33) intron (NM_002646, intron 2 of 33) 10262 NM_002646 5287 Hs.497487 NM_002646 HPRD:04160 PIK3C2B C2-PI3K phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta protein-coding 13-PTNLD9-TUMOR_peak_38410 chr4 53683082 53683182 + 12.47100 NA Intergenic L1HS|LINE|L1 26971 NR_040106 152578 Hs.383806 NR_040106 ENSG00000250302 LOC152578 - uncharacterized LOC152578 ncRNA 13-PTNLD9-TUMOR_peak_54963 chr9 135645581 135645710 + 12.47100 NA intron (NM_152572, intron 11 of 12) CpG -99857 NM_022779 64794 Hs.660767 NM_022779 HPRD:10860 DDX31 PPP1R25 DEAD (Asp-Glu-Ala-Asp) box polypeptide 31 protein-coding 13-PTNLD9-TUMOR_peak_51725 chr8 119922770 119922895 + 12.47100 NA Intergenic Intergenic 41551 NM_002546 4982 Hs.81791 NM_002546 HPRD:04032 TNFRSF11B OCIF|OPG|TR1 tumor necrosis factor receptor superfamily, member 11b protein-coding 13-PTNLD9-TUMOR_peak_26939 chr2 54439693 54439842 + 12.47100 NA intron (NM_138448, intron 3 of 3) intron (NM_138448, intron 3 of 3) 43642 NM_001003937 388951 Hs.620508 NM_001003937 HPRD:11652 TSPYL6 - TSPY-like 6 protein-coding 13-PTNLD9-TUMOR_peak_6956 chr10 36913632 36913741 + 12.47100 NA Intergenic FLAM_A|SINE|Alu -501099 NM_052997 91074 Hs.373787 NM_052997 HPRD:10125 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 13-PTNLD9-TUMOR_peak_41498 chr5 90088699 90088823 + 12.47100 NA intron (NR_003149, intron 70 of 89) MER6A|DNA|TcMar-Tigger 234144 NR_003149 84059 Hs.591777 NM_032119 HPRD:09111 GPR98 FEB4|MASS1|USH2B|USH2C|VLGR1|VLGR1b G protein-coupled receptor 98 protein-coding 13-PTNLD9-TUMOR_peak_29814 chr2 218786146 218786281 + 12.47100 NA intron (NM_022648, intron 1 of 32) intron (NM_022648, intron 1 of 32) -20862 NR_106867 102465485 NR_106867 MIR6809 hsa-mir-6809 microRNA 6809 ncRNA 13-PTNLD9-TUMOR_peak_18562 chr16 14109964 14110148 + 12.47100 NA promoter-TSS (NR_110909) promoter-TSS (NR_110909) -181 NR_110909 101927311 NR_110909 LOC101927311 - uncharacterized LOC101927311 ncRNA 13-PTNLD9-TUMOR_peak_42455 chr5 142916038 142916198 + 12.47100 NA Intergenic Intergenic -101041 NM_001018075 2908 Hs.122926 NM_000176 HPRD:00679 NR3C1 GCCR|GCR|GR|GRL nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) protein-coding 13-PTNLD9-TUMOR_peak_1911 chr1 57242786 57242890 + 12.47100 NA intron (NM_001004303, intron 4 of 19) AluYa5|SINE|Alu 42531 NM_001004303 199920 Hs.437655 NM_001004303 HPRD:14120 C1orf168 - chromosome 1 open reading frame 168 protein-coding 13-PTNLD9-TUMOR_peak_30463 chr20 14269617 14269872 + 12.47100 NA intron (NM_080676, intron 3 of 16) intron (NM_080676, intron 3 of 16) 48569 NM_198391 23767 Hs.41296 NM_013281 HPRD:05313 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 13-PTNLD9-TUMOR_peak_47412 chr7 46584074 46584205 + 12.47100 NA Intergenic Intergenic -623268 NM_001013398 3486 Hs.450230 NM_000598 HPRD:00899 IGFBP3 BP-53|IBP3 insulin-like growth factor binding protein 3 protein-coding 13-PTNLD9-TUMOR_peak_48750 chr7 106101472 106101658 + 12.47100 NA Intergenic MER41B|LTR|ERV1 -175927 NM_005746 10135 Hs.489615 NM_005746 HPRD:09938 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 13-PTNLD9-TUMOR_peak_15630 chr14 44157183 44157337 + 12.47100 NA Intergenic Intergenic 819239 NM_032135 84075 Hs.307086 NM_032135 HPRD:12638 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 13-PTNLD9-TUMOR_peak_38239 chr4 41527269 41527488 + 12.47100 NA intron (NM_001289122, intron 3 of 25) intron (NM_001289122, intron 3 of 25) -87411 NM_001112719 22998 Hs.335163 NM_014988 HPRD:11125 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 13-PTNLD9-TUMOR_peak_1938 chr1 59084056 59084230 + 12.47100 NA Intergenic MLT1J|LTR|ERVL-MaLR -40977 NM_002353 4070 Hs.23582 NM_002353 HPRD:00672 TACSTD2 EGP-1|EGP1|GA733-1|GA7331|GP50|M1S1|TROP2 tumor-associated calcium signal transducer 2 protein-coding 13-PTNLD9-TUMOR_peak_42304 chr5 139525403 139525622 + 12.46679 NA Intergenic (CGG)n|Simple_repeat|Simple_repeat 19991 NM_001007189 492311 Hs.696360 NM_001007189 HPRD:17411 IGIP C5orf53 IgA-inducing protein protein-coding 13-PTNLD9-TUMOR_peak_37410 chr3 195739929 195740086 + 12.46679 NA Intergenic Intergenic -22857 NR_003264 255812 Hs.566872 NR_003264 ENSG00000185485 SDHAP1 SDHAL1|SDHALP1 succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_16929 chr15 31214770 31215038 + 12.46679 NA intron (NM_014967, intron 8 of 14) intron (NM_014967, intron 8 of 14) 18828 NM_001146096 22909 Hs.584863 NM_014967 HPRD:17205 FAN1 KIAA1018|KMIN|MTMR15 FANCD2/FANCI-associated nuclease 1 protein-coding 13-PTNLD9-TUMOR_peak_9392 chr11 28857887 28858153 + 12.46679 NA Intergenic Intergenic -358925 NR_107035 102466876 NR_107035 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 13-PTNLD9-TUMOR_peak_54796 chr9 129874484 129874638 + 12.46679 NA intron (NM_012098, intron 1 of 4) intron (NM_012098, intron 1 of 4) 10483 NM_012098 23452 Hs.653262 NM_012098 HPRD:05415 ANGPTL2 ARP2|HARP angiopoietin-like 2 protein-coding 13-PTNLD9-TUMOR_peak_28328 chr2 122925275 122925380 + 12.46679 NA Intergenic Intergenic 412206 NR_048557 7247 Hs.75066 NM_004622 HPRD:08993 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 13-PTNLD9-TUMOR_peak_29818 chr2 218903906 218904161 + 12.46679 NA intron (NR_034176, intron 2 of 13) intron (NR_034176, intron 2 of 13) 4376 NR_034176 285180 Hs.570069 NM_198483 HPRD:13539 RUFY4 - RUN and FYVE domain containing 4 protein-coding 13-PTNLD9-TUMOR_peak_52368 chr8 142578744 142578876 + 12.46679 NA Intergenic Intergenic -61480 NR_102364 389690 Hs.689547 NM_207414 HPRD:13480 MROH5 - maestro heat-like repeat family member 5 protein-coding 13-PTNLD9-TUMOR_peak_29265 chr2 182656141 182656288 + 12.46679 NA Intergenic Intergenic -100229 NM_001287504 6744 Hs.196983 NM_006751 HPRD:00353 SSFA2 CS-1|CS1|KRAP|SPAG13 sperm specific antigen 2 protein-coding 13-PTNLD9-TUMOR_peak_33887 chr3 14371033 14371256 + 12.46495 NA Intergenic Intergenic 22924 NR_110135 101927565 Hs.306905 NR_110135 ENSG00000251576 LINC01267 - long intergenic non-protein coding RNA 1267 ncRNA 13-PTNLD9-TUMOR_peak_44304 chr6 27446591 27446779 + 12.46495 NA Intergenic Intergenic -5788 NM_007149 7738 Hs.158174 NM_007149 HPRD:03785 ZNF184 - zinc finger protein 184 protein-coding 13-PTNLD9-TUMOR_peak_37620 chr4 2464321 2464645 + 12.46495 NA intron (NM_001193282, intron 15 of 15) CpG-19507 -6312 NM_001185010 6047 Hs.66394 NM_002938 HPRD:04167 RNF4 SLX5|SNURF ring finger protein 4 protein-coding 13-PTNLD9-TUMOR_peak_9113 chr11 12821750 12821912 + 12.46495 NA intron (NM_021961, intron 3 of 12) MIRc|SINE|MIR 125862 NM_021961 7003 Hs.655331 NM_021961 HPRD:01802 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain family member 1 (SV40 transcriptional enhancer factor) protein-coding 13-PTNLD9-TUMOR_peak_43669 chr6 7239162 7239280 + 12.46495 NA intron (NM_001003698, intron 10 of 11) intron (NM_001003698, intron 10 of 11) 74326 NM_001292008 6745 Hs.114033 NM_003144 HPRD:02924 SSR1 TRAPA signal sequence receptor, alpha protein-coding 13-PTNLD9-TUMOR_peak_30533 chr20 18565371 18565541 + 12.45943 NA Intergenic Intergenic -3100 NM_080820 92675 Hs.659442 NM_080820 ENSG00000125821 DTD1 C20orf88|DUE-B|DUEB|HARS2|bA379J5.3|bA555E18.1|pqn-68 D-tyrosyl-tRNA deacylase 1 protein-coding 13-PTNLD9-TUMOR_peak_31443 chr20 49094876 49095027 + 12.45637 NA Intergenic LTR1|LTR|ERV1 -31907 NM_002827 5770 Hs.417549 NM_002827 HPRD:01477 PTPN1 PTP1B protein tyrosine phosphatase, non-receptor type 1 protein-coding 13-PTNLD9-TUMOR_peak_31302 chr20 46473130 46473287 + 12.45637 NA Intergenic MLT1D|LTR|ERVL-MaLR -57848 NM_198596 55959 Hs.162016 NM_018837 HPRD:18130 SULF2 HSULF-2 sulfatase 2 protein-coding 13-PTNLD9-TUMOR_peak_8269 chr10 105541231 105541560 + 12.45637 NA intron (NM_014631, intron 2 of 13) intron (NM_014631, intron 2 of 13) 34858 NR_038940 100505839 Hs.655149 NR_038940 SH3PXD2A-AS1 - SH3PXD2A antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_32691 chr22 18544203 18544360 + 12.45637 NA Intergenic Intergenic -16405 NM_017929 55670 Hs.517400 NM_017929 PEX26 PBD7A|PBD7B|PEX26M1T|Pex26pM1T peroxisomal biogenesis factor 26 protein-coding 13-PTNLD9-TUMOR_peak_29293 chr2 184792847 184792979 + 12.45637 NA Intergenic LTR72|LTR|ERV1 -670180 NM_194250 91752 Hs.159528 NM_194250 HPRD:12804 ZNF804A C2orf10 zinc finger protein 804A protein-coding 13-PTNLD9-TUMOR_peak_35609 chr3 123588994 123589246 + 12.45637 NA intron (NM_053025, intron 2 of 33) intron (NM_053025, intron 2 of 33) 14029 NM_053026 4638 Hs.477375 NM_005965 HPRD:02952 MYLK AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK myosin light chain kinase protein-coding 13-PTNLD9-TUMOR_peak_41417 chr5 80316501 80316925 + 12.45637 NA intron (NM_006909, intron 1 of 26) MIRb|SINE|MIR -59987 NR_105015 102524628 Hs.737159 NR_105015 RASGRF2-AS1 - RASGRF2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_40541 chr5 32325295 32325514 + 12.45637 NA Intergenic L2c|LINE|L2 -12290 NM_001294343 54545 Hs.481836 NM_019061 HPRD:05933 MTMR12 3-PAP|PIP3AP myotubularin related protein 12 protein-coding 13-PTNLD9-TUMOR_peak_45517 chr6 74435023 74435188 + 12.45637 NA intron (NM_001159588, intron 3 of 31) intron (NM_001159588, intron 3 of 31) -29251 NR_110889 101928489 Hs.660059 NR_110889 LOC101928489 - uncharacterized LOC101928489 ncRNA 13-PTNLD9-TUMOR_peak_11907 chr12 5357511 5357660 + 12.45637 NA Intergenic Intergenic -5268 NR_120477 101929584 Hs.436529 NR_120476 ENSG00000256115 LOC101929584 - uncharacterized LOC101929584 ncRNA 13-PTNLD9-TUMOR_peak_8741 chr11 576365 576505 + 12.44775 NA promoter-TSS (NM_020901) promoter-TSS (NM_020901) -11 NM_001286581 57661 Hs.325838 NM_020901 HPRD:13870 PHRF1 PPP1R125|RNF221 PHD and ring finger domains 1 protein-coding 13-PTNLD9-TUMOR_peak_14806 chr13 53325366 53325600 + 12.44461 NA Intergenic Intergenic -11536 NM_007015 11061 Hs.421391 NM_007015 HPRD:05511 LECT1 BRICD3|CHM-I|CHM1|MYETS1 leukocyte cell derived chemotaxin 1 protein-coding 13-PTNLD9-TUMOR_peak_9597 chr11 41302751 41302962 + 12.44461 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 178330 NM_001258419 57689 Hs.745123 NM_020929 HPRD:12303 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 13-PTNLD9-TUMOR_peak_954 chr1 32093734 32093900 + 12.44461 NA TTS (NM_001525) TTS (NM_001525) 10516 NM_001525 3061 Hs.388226 NM_001525 HPRD:03863 HCRTR1 OX1R hypocretin (orexin) receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_8958 chr11 8280464 8280673 + 12.44461 NA intron (NM_001270428, intron 1 of 3) intron (NM_001270428, intron 1 of 3) 4857 NR_073006 4004 Hs.654426 NM_002315 HPRD:01738 LMO1 RBTN1|RHOM1|TTG1 LIM domain only 1 (rhombotin 1) protein-coding 13-PTNLD9-TUMOR_peak_50394 chr8 26187476 26187587 + 12.44461 NA intron (NM_002717, intron 2 of 9) L1MEc|LINE|L1 36799 NM_001177591 5520 Hs.146339 NM_002717 HPRD:09223 PPP2R2A B55A|B55ALPHA|PR52A|PR55A protein phosphatase 2, regulatory subunit B, alpha protein-coding 13-PTNLD9-TUMOR_peak_50972 chr8 55466924 55467239 + 12.44461 NA Intergenic Intergenic -61546 NM_006269 6101 Hs.732820 NM_006269 HPRD:04896 RP1 DCDC4A|ORP1 retinitis pigmentosa 1 (autosomal dominant) protein-coding 13-PTNLD9-TUMOR_peak_45749 chr6 93357448 93357596 + 12.44461 NA Intergenic Intergenic 771778 NM_001288630 2045 Hs.73962 NM_004440 HPRD:03721 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 13-PTNLD9-TUMOR_peak_38843 chr4 88894564 88894822 + 12.44461 NA Intergenic Intergenic -2109 NM_001040060 6696 Hs.313 NM_000582 HPRD:01325 SPP1 BNSP|BSPI|ETA-1|OPN secreted phosphoprotein 1 protein-coding 13-PTNLD9-TUMOR_peak_44450 chr6 30449965 30450251 + 12.44461 NA Intergenic Intergenic -7075 NM_005516 3133 Hs.650174 NM_005516 HPRD:00877 HLA-E EA1.2|EA2.1|HLA-6.2|MHC|QA1 major histocompatibility complex, class I, E protein-coding 13-PTNLD9-TUMOR_peak_50645 chr8 38262798 38262939 + 12.44417 NA intron (NM_001286819, intron 8 of 10) intron (NM_001286819, intron 8 of 10) 18219 NM_001199660 137994 Hs.696457 NM_144652 HPRD:08060 LETM2 - leucine zipper-EF-hand containing transmembrane protein 2 protein-coding 13-PTNLD9-TUMOR_peak_18525 chr16 11629307 11629677 + 12.44417 NA Intergenic Intergenic 50737 NM_004862 9516 Hs.459940 NM_004862 HPRD:10354 LITAF PIG7|SIMPLE|TP53I7 lipopolysaccharide-induced TNF factor protein-coding 13-PTNLD9-TUMOR_peak_28070 chr2 112251484 112251602 + 12.44332 NA intron (NR_024373, intron 1 of 1) intron (NR_024373, intron 1 of 1) 1149 NR_015395 541471 Hs.560805 NR_015395 ENSG00000172965 MIR4435-1HG AGD2|LINC00978 MIR4435-1 host gene (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_32809 chr22 21051741 21052081 + 12.44332 NA Intergenic Intergenic -3491 NR_026815 84222 Hs.546454 NM_032262 HPRD:13197 TMEM191A TMEM191AP transmembrane protein 191A (pseudogene) pseudo 13-PTNLD9-TUMOR_peak_54809 chr9 130341340 130341565 + 12.43983 NA promoter-TSS (NM_001035534) promoter-TSS (NM_001035534) -166 NM_001035534 64855 Hs.522401 NM_022833 HPRD:10804 FAM129B C9orf88|MEG-3|MINERVA|OC58|bA356B19.6 family with sequence similarity 129, member B protein-coding 13-PTNLD9-TUMOR_peak_27157 chr2 68478319 68478476 + 12.43983 NA intron (NM_000945, intron 1 of 5) intron (NM_000945, intron 1 of 5) 1254 NM_000945 5534 Hs.280604 NM_000945 HPRD:03195 PPP3R1 CALNB1|CNB|CNB1 protein phosphatase 3, regulatory subunit B, alpha protein-coding 13-PTNLD9-TUMOR_peak_3081 chr1 120279995 120280246 + 12.43755 NA intron (NM_006623, intron 8 of 11) intron (NM_006623, intron 8 of 11) 25701 NM_006623 26227 Hs.487296 NM_006623 HPRD:06047 PHGDH 3-PGDH|3PGDH|HEL-S-113|NLS|PDG|PGAD|PGD|PGDH|PHGDHD|SERA phosphoglycerate dehydrogenase protein-coding 13-PTNLD9-TUMOR_peak_15968 chr14 62031476 62031646 + 12.43353 NA non-coding (NR_110416, exon 4 of 5) non-coding (NR_110416, exon 4 of 5) 5351 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LOC101927780 - uncharacterized LOC101927780 ncRNA 13-PTNLD9-TUMOR_peak_48039 chr7 75943691 75943856 + 12.43353 NA Intergenic Intergenic 11898 NM_001540 3315 Hs.520973 NM_001540 HPRD:09076 HSPB1 CMT2F|HEL-S-102|HMN2B|HS.76067|HSP27|HSP28|Hsp25|SRP27 heat shock 27kDa protein 1 protein-coding 13-PTNLD9-TUMOR_peak_19447 chr16 57661399 57661735 + 12.43018 NA promoter-TSS (NM_001145773) promoter-TSS (NM_001145773) -571 NM_201525 9289 Hs.513633 NM_005682 HPRD:06824 GPR56 BFPP|BPPR|TM7LN4|TM7XN1 G protein-coupled receptor 56 protein-coding 13-PTNLD9-TUMOR_peak_5530 chr1 223895463 223895910 + 12.42101 NA intron (NM_001146068, intron 1 of 20) intron (NM_001146068, intron 1 of 20) -4433 NM_001748 824 Hs.350899 NM_001748 HPRD:00254 CAPN2 CANP2|CANPL2|CANPml|mCANP calpain 2, (m/II) large subunit protein-coding 13-PTNLD9-TUMOR_peak_8851 chr11 3419645 3420015 + 12.41900 NA intron (NR_024248, intron 3 of 10) intron (NR_024248, intron 3 of 10) -6685 NR_044999 10821 Hs.637689 NR_044999 ENSG00000189398 OR7E12P HG1058|OR11-3|OR7E58P|OR7E79P|OR7E81P|OST021 olfactory receptor, family 7, subfamily E, member 12 pseudogene pseudo 13-PTNLD9-TUMOR_peak_10658 chr11 75287611 75287950 + 12.41900 NA Intergenic Intergenic 14679 NM_001235 871 Hs.596449 NM_001235 HPRD:02968 SERPINH1 AsTP3|CBP1|CBP2|HSP47|OI10|PPROM|RA-A47|SERPINH2|gp46 serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1) protein-coding 13-PTNLD9-TUMOR_peak_47948 chr7 74026572 74026888 + 12.41900 NA Intergenic Intergenic -45261 NM_032999 2969 Hs.647041 NM_001518 HPRD:03399 GTF2I BAP135|BTKAP1|DIWS|GTFII-I|IB291|SPIN|TFII-I|WBS|WBSCR6 general transcription factor IIi protein-coding 13-PTNLD9-TUMOR_peak_39748 chr4 158942006 158942152 + 12.41900 NA Intergenic Intergenic 151639 NM_016613 51313 Hs.567498 NM_016613 HPRD:13194 FAM198B AD036|C4orf18 family with sequence similarity 198, member B protein-coding 13-PTNLD9-TUMOR_peak_40864 chr5 53940183 53940338 + 12.41900 NA Intergenic Intergenic 58892 NR_104659 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 13-PTNLD9-TUMOR_peak_40410 chr5 16057403 16057653 + 12.41900 NA Intergenic Intergenic 122369 NM_001102562 441061 Hs.662216 NM_001102562 ENSG00000183654 MARCH11 MARCH-XI membrane-associated ring finger (C3HC4) 11 protein-coding 13-PTNLD9-TUMOR_peak_9576 chr11 37525717 37526036 + 12.41900 NA Intergenic Intergenic -906047 NM_001243786 5897 Hs.714519 NM_000536 HPRD:08913 RAG2 RAG-2 recombination activating gene 2 protein-coding 13-PTNLD9-TUMOR_peak_49315 chr7 138636786 138636980 + 12.41900 NA intron (NM_001164665, intron 1 of 19) MER5B|DNA|hAT-Charlie 29181 NM_020910 57670 Hs.605380 NM_020910 ENSG00000122778 KIAA1549 - KIAA1549 protein-coding 13-PTNLD9-TUMOR_peak_42555 chr5 148358730 148358914 + 12.41900 NA Intergenic Intergenic 83915 NM_024577 79628 Hs.483784 NM_024577 SH3TC2 CMT4C|MNMN SH3 domain and tetratricopeptide repeats 2 protein-coding 13-PTNLD9-TUMOR_peak_4611 chr1 180541224 180541707 + 12.41442 NA Intergenic L2c|LINE|L2 13355 NR_125716 148756 NR_125716 OVAAL LINC01131|OVAL ovarian adenocarcinoma amplified long non-coding RNA ncRNA 13-PTNLD9-TUMOR_peak_29640 chr2 206613495 206613701 + 12.41442 NA intron (NM_003872, intron 10 of 16) intron (NM_003872, intron 10 of 16) 66374 NM_201264 8828 Hs.471200 NM_003872 HPRD:03643 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 13-PTNLD9-TUMOR_peak_12678 chr12 48218994 48219379 + 12.41368 NA Intergenic Intergenic -5423 NM_015401 51564 Hs.200063 NM_015401 HPRD:09133 HDAC7 HD7A|HDAC7A histone deacetylase 7 protein-coding 13-PTNLD9-TUMOR_peak_6288 chr10 3098553 3098791 + 12.41116 NA Intergenic Intergenic -11040 NM_002627 5214 Hs.26010 NM_002627 HPRD:01384 PFKP ATP-PFK|PFK-C|PFK-P|PFKF phosphofructokinase, platelet protein-coding 13-PTNLD9-TUMOR_peak_585 chr1 19360543 19361060 + 12.41116 NA Intergenic Intergenic -77975 NM_001136265 126917 Hs.466625 NM_001136265 ENSG00000169991 IFFO2 - intermediate filament family orphan 2 protein-coding 13-PTNLD9-TUMOR_peak_50299 chr8 22508512 22508672 + 12.41116 NA intron (NM_018688, intron 1 of 8) MLT1F|LTR|ERVL-MaLR -8870 NR_027715 80094 Hs.675917 NM_025026 BIN3-IT1 - BIN3 intronic transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_47173 chr7 30634408 30634615 + 12.41116 NA 5' UTR (NM_002047, exon 1 of 17) 5' UTR (NM_002047, exon 1 of 17) 330 NM_002047 2617 Hs.404321 NM_002047 HPRD:02617 GARS CMT2D|DSMAV|GlyRS|HMN5|SMAD1 glycyl-tRNA synthetase protein-coding 13-PTNLD9-TUMOR_peak_29038 chr2 170672418 170672597 + 12.41116 NA intron (NM_001293186, intron 5 of 7) Tigger3a|DNA|TcMar-Tigger 8934 NM_014168 29081 Hs.470553 NM_014168 ENSG00000138382 METTL5 HSPC133 methyltransferase like 5 protein-coding 13-PTNLD9-TUMOR_peak_39083 chr4 111437599 111437800 + 12.41116 NA intron (NM_001977, intron 8 of 19) intron (NM_001977, intron 8 of 19) 40470 NM_001977 2028 Hs.435765 NM_001977 ENPEP APA|CD249|gp160 glutamyl aminopeptidase (aminopeptidase A) protein-coding 13-PTNLD9-TUMOR_peak_47184 chr7 30971248 30971508 + 12.41116 NA Intergenic Intergenic 10259 NM_001185062 358 Hs.76152 NM_000385 HPRD:00140 AQP1 AQP-CHIP|CHIP28|CO aquaporin 1 (Colton blood group) protein-coding 13-PTNLD9-TUMOR_peak_36484 chr3 156201270 156201447 + 12.41116 NA intron (NM_172160, intron 8 of 13) intron (NM_172160, intron 8 of 13) -36664 NR_046618 100874084 Hs.131282 NR_046618 ENSG00000242370 KCNAB1-AS1 - KCNAB1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_9231 chr11 18268296 18268458 + 12.41116 NA intron (NM_030754, intron 2 of 3) MER5B|DNA|hAT-Charlie 1844 NM_001127380 6289 Hs.731376 NM_030754 HPRD:00098 SAA2 - serum amyloid A2 protein-coding 13-PTNLD9-TUMOR_peak_51978 chr8 128556095 128556353 + 12.41116 NA Intergenic Intergenic -61840 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLo-1|LINC00860 cancer susceptibility candidate 8 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_1222 chr1 38974068 38974202 + 12.41116 NA Intergenic Intergenic -293696 NR_038928 339442 Hs.434245 NR_038928 ENSG00000237290 LINC01343 - long intergenic non-protein coding RNA 1343 ncRNA 13-PTNLD9-TUMOR_peak_15591 chr14 38092855 38093004 + 12.41116 NA Intergenic MIR|SINE|MIR -28604 NM_004496 3169 Hs.163484 NM_004496 HPRD:03801 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 13-PTNLD9-TUMOR_peak_1930 chr1 58898594 58898834 + 12.41116 NA Intergenic Intergenic 113732 NM_145243 115209 Hs.425769 NM_145243 HPRD:14879 OMA1 2010001O09Rik|DAB1|MPRP-1|YKR087C|ZMPOMA1|peptidase OMA1 zinc metallopeptidase protein-coding 13-PTNLD9-TUMOR_peak_54066 chr9 97610607 97610726 + 12.41116 NA intron (NM_032823, intron 5 of 14) AluY|SINE|Alu 38422 NR_031755 100313780 NR_031755 MIR2278 - microRNA 2278 ncRNA 13-PTNLD9-TUMOR_peak_41978 chr5 129103653 129103891 + 12.41116 NA Intergenic Intergenic 19888 NM_001257308 100127206 Hs.582534 NM_001257308 KIAA1024L - KIAA1024-like protein-coding 13-PTNLD9-TUMOR_peak_1929 chr1 58897689 58897804 + 12.41116 NA Intergenic Intergenic 114700 NM_145243 115209 Hs.425769 NM_145243 HPRD:14879 OMA1 2010001O09Rik|DAB1|MPRP-1|YKR087C|ZMPOMA1|peptidase OMA1 zinc metallopeptidase protein-coding 13-PTNLD9-TUMOR_peak_45619 chr6 83661300 83661429 + 12.41116 NA intron (NM_198920, intron 9 of 9) intron (NM_198920, intron 9 of 9) 114181 NM_198920 90025 Hs.148609 NM_198920 HPRD:12861 UBE3D C6orf157|H10BH|UBE2CBP|YJR141W ubiquitin protein ligase E3D protein-coding 13-PTNLD9-TUMOR_peak_4595 chr1 180086741 180086937 + 12.40610 NA Intergenic HAL1|LINE|L1 -37129 NM_002826 5768 Hs.744925 NM_002826 HPRD:06785 QSOX1 Q6|QSCN6 quiescin Q6 sulfhydryl oxidase 1 protein-coding 13-PTNLD9-TUMOR_peak_40961 chr5 57185380 57185610 + 12.40610 NA TTS (NR_109900) TTS (NR_109900) 9494 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LOC101928539 - uncharacterized LOC101928539 ncRNA 13-PTNLD9-TUMOR_peak_43482 chr6 2903050 2903222 + 12.40610 NA intron (NM_004155, intron 1 of 6) intron (NM_004155, intron 1 of 6) 410 NM_004155 5272 Hs.104879 NM_004155 HPRD:03480 SERPINB9 CAP-3|CAP3|PI-9|PI9 serpin peptidase inhibitor, clade B (ovalbumin), member 9 protein-coding 13-PTNLD9-TUMOR_peak_27234 chr2 71250834 71250951 + 12.40610 NA promoter-TSS (NR_002185) promoter-TSS (NR_002185) -313 NR_002185 79315 Hs.327033 NR_002185 ENSG00000205847 OR7E91P - olfactory receptor, family 7, subfamily E, member 91 pseudogene pseudo 13-PTNLD9-TUMOR_peak_6022 chr1 237317548 237317744 + 12.40610 NA intron (NM_001035, intron 1 of 104) intron (NM_001035, intron 1 of 104) 111944 NM_001035 6262 Hs.109514 NM_001035 HPRD:01619 RYR2 ARVC2|ARVD2|RYR-2|RyR|VTSIP ryanodine receptor 2 (cardiac) protein-coding 13-PTNLD9-TUMOR_peak_44814 chr6 36558142 36558305 + 12.40411 NA Intergenic Intergenic -3867 NR_036610 6428 Hs.405144 NM_003017 SRSF3 SFRS3|SRp20 serine/arginine-rich splicing factor 3 protein-coding 13-PTNLD9-TUMOR_peak_10945 chr11 94480422 94480649 + 12.40411 NA Intergenic Intergenic -20973 NM_001301007 154810 Hs.503594 NM_130847 HPRD:12451 AMOTL1 JEAP angiomotin like 1 protein-coding 13-PTNLD9-TUMOR_peak_37822 chr4 7212666 7212784 + 12.40411 NA intron (NM_020777, intron 1 of 26) intron (NM_020777, intron 1 of 26) 18351 NM_020777 57537 Hs.479099 NM_020777 HPRD:12099 SORCS2 - sortilin-related VPS10 domain containing receptor 2 protein-coding 13-PTNLD9-TUMOR_peak_42918 chr5 167792151 167792798 + 12.40411 NA intron (NM_015238, intron 1 of 22) intron (NM_015238, intron 1 of 22) 73409 NM_001161662 23286 Hs.484047 NM_015238 HPRD:10033 WWC1 HBEBP3|HBEBP36|KIBRA|MEMRYQTL|PPP1R168 WW and C2 domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_11994 chr12 6723571 6723744 + 12.40411 NA Intergenic Intergenic -7058 NM_001273 1108 Hs.162233 NM_001273 HPRD:04472 CHD4 CHD-4|Mi-2b|Mi2-BETA chromodomain helicase DNA binding protein 4 protein-coding 13-PTNLD9-TUMOR_peak_49451 chr7 142490758 142490908 + 12.40273 NA Intergenic MIRb|SINE|MIR 10925 NM_002770 5645 Hs.449281 NM_002770 PRSS2 TRY2|TRY8|TRYP2 protease, serine, 2 (trypsin 2) protein-coding 13-PTNLD9-TUMOR_peak_24379 chr19 18214897 18215043 + 12.40269 NA intron (NM_015016, intron 1 of 26) AluSz|SINE|Alu -5344 NM_001290024 3594 Hs.567294 NM_005535 HPRD:03363 IL12RB1 CD212|IL-12R-BETA1|IL12RB interleukin 12 receptor, beta 1 protein-coding 13-PTNLD9-TUMOR_peak_44758 chr6 35232702 35232950 + 12.40269 NA intron (NM_003427, intron 1 of 13) intron (NM_003427, intron 1 of 13) 5335 NM_001292032 7629 Hs.388024 NM_003427 HPRD:01929 ZNF76 D6S229E|ZNF523|Zfp523 zinc finger protein 76 protein-coding 13-PTNLD9-TUMOR_peak_11334 chr11 117069745 117070071 + 12.40269 NA promoter-TSS (NM_001001522) promoter-TSS (NM_001001522) -132 NM_003186 6876 Hs.410977 NM_003186 HPRD:02891 TAGLN SM22|SMCC|TAGLN1|WS3-10 transgelin protein-coding 13-PTNLD9-TUMOR_peak_10290 chr11 66103804 66104137 + 12.40269 NA promoter-TSS (NM_004292) promoter-TSS (NM_004292) 30 NM_004292 9610 Hs.1030 NM_004292 HPRD:05813 RIN1 - Ras and Rab interactor 1 protein-coding 13-PTNLD9-TUMOR_peak_1476 chr1 43941728 43941893 + 12.40269 NA Intergenic Intergenic -22150 NM_001243526 81888 Hs.709864 NM_031207 HPRD:11039 HYI HT036 hydroxypyruvate isomerase (putative) protein-coding 13-PTNLD9-TUMOR_peak_48580 chr7 100882181 100882414 + 12.39923 NA promoter-TSS (NM_001185080) promoter-TSS (NM_001185080) -196 NM_001185080 24146 Hs.38738 NM_014343 HPRD:13065 CLDN15 - claudin 15 protein-coding 13-PTNLD9-TUMOR_peak_48952 chr7 127661428 127661754 + 12.39923 NA intron (NM_014390, intron 16 of 23) intron (NM_014390, intron 16 of 23) 9411 NM_022143 64101 Hs.655003 NM_022143 HPRD:10060 LRRC4 NGL-2 leucine rich repeat containing 4 protein-coding 13-PTNLD9-TUMOR_peak_49601 chr7 149757748 149757895 + 12.39923 NA Intergenic Intergenic -186870 NR_027040 401431 Hs.556998 NM_001008745 HPRD:17391 ATP6V0E2-AS1 - ATP6V0E2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_44558 chr6 31685401 31685577 + 12.39778 NA TTS (NM_025261).2 TTS (NM_025261).2 2356 NM_021246 58530 Hs.591792 NM_021246 HPRD:16192 LY6G6D C6orf23|G6D|LY6-D|MEGT1|NG25 lymphocyte antigen 6 complex, locus G6D protein-coding 13-PTNLD9-TUMOR_peak_18198 chr16 1660633 1660771 + 12.38460 NA 5' UTR (NM_014714, exon 2 of 31) 5' UTR (NM_014714, exon 2 of 31) 1407 NM_014714 9742 Hs.389438 NM_014714 HPRD:11093 IFT140 MZSDS|SRTD9|WDTC2|c305C8.4|c380F5.1|gs114 intraflagellar transport 140 protein-coding 13-PTNLD9-TUMOR_peak_52567 chr8_gl000196_random 28464 28698 + 12.38256 NA NA AluJb|SINE|Alu NA NA 13-PTNLD9-TUMOR_peak_9344 chr11 26578239 26578370 + 12.38256 NA intron (NM_031418, intron 13 of 26) intron (NM_031418, intron 13 of 26) 15511 NM_145650 143662 Hs.407152 NM_145650 HPRD:16349 MUC15 MUC-15|PAS3|PASIII mucin 15, cell surface associated protein-coding 13-PTNLD9-TUMOR_peak_2197 chr1 73649133 73649417 + 12.38256 NA Intergenic LTR10F|LTR|ERV1 -122578 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 13-PTNLD9-TUMOR_peak_8169 chr10 102295515 102295693 + 12.38256 NA promoter-TSS (NM_017902) promoter-TSS (NM_017902) -37 NM_017902 55662 Hs.500788 NM_017902 HIF1AN FIH1 hypoxia inducible factor 1, alpha subunit inhibitor protein-coding 13-PTNLD9-TUMOR_peak_50484 chr8 28938678 28938840 + 12.38256 NA intron (NM_015254, intron 37 of 39) intron (NM_015254, intron 37 of 39) 181851 NM_015254 23303 Hs.444767 NM_015254 HPRD:09556 KIF13B GAKIN kinesin family member 13B protein-coding 13-PTNLD9-TUMOR_peak_15823 chr14 55166050 55166204 + 12.38256 NA intron (NM_001161576, intron 1 of 10) intron (NM_001161576, intron 1 of 10) -55379 NM_001161577 23034 Hs.98259 NM_015589 HPRD:10209 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 13-PTNLD9-TUMOR_peak_38568 chr4 73497039 73497271 + 12.38256 NA Intergenic Intergenic -62639 NM_014243 9508 Hs.590919 NM_014243 HPRD:06893 ADAMTS3 ADAMTS-4 ADAM metallopeptidase with thrombospondin type 1 motif, 3 protein-coding 13-PTNLD9-TUMOR_peak_26805 chr2 46480374 46480496 + 12.38256 NA Intergenic Intergenic -44106 NM_001430 2034 Hs.468410 NM_001430 HPRD:06787 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 13-PTNLD9-TUMOR_peak_11716 chr11 133764990 133765138 + 12.38256 NA Intergenic Intergenic 3412 NR_039846 100616119 NR_039846 miRBase:MI0017330 MIR4697 - microRNA 4697 ncRNA 13-PTNLD9-TUMOR_peak_34646 chr3 52104937 52105060 + 12.38256 NA Intergenic Intergenic -5870 NR_027331 100128378 Hs.640106 NM_001123039 LINC00696 C3orf74 long intergenic non-protein coding RNA 696 ncRNA 13-PTNLD9-TUMOR_peak_46607 chr6 171043538 171043671 + 12.37498 NA Intergenic Intergenic -149824 NM_001199461 5134 Hs.367900 NM_002598 HPRD:02922 PDCD2 RP8|ZMYND7 programmed cell death 2 protein-coding 13-PTNLD9-TUMOR_peak_36506 chr3 156799478 156799699 + 12.37498 NA non-coding (NR_034007, exon 4 of 4) non-coding (NR_034007, exon 4 of 4) -8082 NR_034008 100498859 Hs.633655 NR_034008 ENSG00000241135 LINC00881 - long intergenic non-protein coding RNA 881 ncRNA 13-PTNLD9-TUMOR_peak_55038 chr9 139462576 139462700 + 12.37396 NA Intergenic L1MB5|LINE|L1 20344 NR_121577 101928483 Hs.170035 NR_121577 MIR4674HG - MIR4674 host gene (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_46778 chr7 5231175 5231391 + 12.37396 NA intron (NM_001033519, intron 1 of 11) intron (NM_001033519, intron 1 of 11) 1448 NM_001278299 26100 Hs.122363 NM_015610 HPRD:15679 WIPI2 ATG18B|Atg21|WIPI-2 WD repeat domain, phosphoinositide interacting 2 protein-coding 13-PTNLD9-TUMOR_peak_3549 chr1 150266200 150266334 + 12.37396 NA promoter-TSS (NM_031901) promoter-TSS (NM_031901) 5 NM_018997 54460 Hs.405880 NM_018997 HPRD:14784 MRPS21 MRP-S21|RPMS21 mitochondrial ribosomal protein S21 protein-coding 13-PTNLD9-TUMOR_peak_19485 chr16 58549230 58549736 + 12.37396 NA promoter-TSS (NM_024860) promoter-TSS (NM_024860) 100 NM_001160305 79918 Hs.731691 NM_024860 HPRD:07956 SETD6 - SET domain containing 6 protein-coding 13-PTNLD9-TUMOR_peak_40324 chr5 10663807 10664160 + 12.37396 NA Intergenic Intergenic 97404 NM_004394 1611 Hs.75189 NM_004394 HPRD:02977 DAP - death-associated protein protein-coding 13-PTNLD9-TUMOR_peak_25347 chr19 49482233 49482410 + 12.37396 NA intron (NR_027763, intron 7 of 14) MIR|SINE|MIR 13755 NM_000146 2512 Hs.433670 NM_000146 HPRD:00616 FTL LFTD|NBIA3 ferritin, light polypeptide protein-coding 13-PTNLD9-TUMOR_peak_44716 chr6 33807921 33808528 + 12.37396 NA Intergenic Intergenic -36431 NM_002418 4295 Hs.2813 NM_002418 HPRD:15931 MLN - motilin protein-coding 13-PTNLD9-TUMOR_peak_37420 chr3 195943254 195943386 + 12.37396 NA promoter-TSS (NM_152672) promoter-TSS (NM_152672) -63 NM_152672 200931 Hs.630585 NM_152672 HPRD:17810 SLC51A OSTA|OSTalpha solute carrier family 51, alpha subunit protein-coding 13-PTNLD9-TUMOR_peak_11624 chr11 129487581 129487748 + 12.37396 NA promoter-TSS (NR_120582) promoter-TSS (NR_120582) -500 NR_120582 101929557 Hs.385785 NR_120582 LINC01395 - long intergenic non-protein coding RNA 1395 ncRNA 13-PTNLD9-TUMOR_peak_2518 chr1 94220105 94220311 + 12.36860 NA intron (NM_001261408, intron 2 of 13) Tigger3b|DNA|TcMar-Tigger -72814 NM_003567 8412 Hs.36958 NM_003567 HPRD:05268 BCAR3 NSP2|SH2D3B breast cancer anti-estrogen resistance 3 protein-coding 13-PTNLD9-TUMOR_peak_3291 chr1 145214868 145215084 + 12.36831 NA intron (NM_203458, intron 1 of 4) MER5B|DNA|hAT-Charlie 5863 NM_203458 388677 Hs.655156 NM_203458 HPRD:14833 NOTCH2NL N2N notch 2 N-terminal like protein-coding 13-PTNLD9-TUMOR_peak_36966 chr3 183959313 183959896 + 12.36085 NA TTS (NR_024534) TTS (NR_024534) 411 NR_030410 100187716 NR_030410 MIR1224 MIRN1224 microRNA 1224 ncRNA 13-PTNLD9-TUMOR_peak_38735 chr4 83666432 83666627 + 12.36085 NA intron (NM_001037582, intron 1 of 4) MamRep605|Unknown|Unknown 8054 NR_030301 693160 NR_030301 MIR575 MIRN575|hsa-mir-575 microRNA 575 ncRNA 13-PTNLD9-TUMOR_peak_11902 chr12 5231320 5231626 + 12.36085 NA Intergenic L1PA2|LINE|L1 78388 NM_002234 3741 Hs.150208 NM_002234 HPRD:08888 KCNA5 ATFB7|HCK1|HK2|HPCN1|KV1.5|PCN1 potassium voltage-gated channel, shaker-related subfamily, member 5 protein-coding 13-PTNLD9-TUMOR_peak_27533 chr2 88315887 88316092 + 12.36085 NA Intergenic U2|snRNA|snRNA -30680 NM_001024457 400966 Hs.728970 NM_001024457 ENSG00000187627 RGPD1 RGP1|RGPD2|RanBP2L2 RANBP2-like and GRIP domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_25264 chr19 48233437 48233609 + 12.36085 NA intron (NM_014601, intron 4 of 5) intron (NM_014601, intron 4 of 5) -15270 NM_015710 29997 Hs.421907 NM_015710 HPRD:16142 GLTSCR2 PICT-1|PICT1 glioma tumor suppressor candidate region gene 2 protein-coding 13-PTNLD9-TUMOR_peak_29747 chr2 213576716 213576891 + 12.36085 NA Intergenic Intergenic -173451 NM_005235 2066 Hs.390729 NM_005235 HPRD:02767 ERBB4 ALS19|HER4|p180erbB4 v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 4 protein-coding 13-PTNLD9-TUMOR_peak_33683 chr3 9391522 9391702 + 12.36085 NA Intergenic Intergenic -13105 NM_001114092 25917 Hs.443081 NM_015453 HPRD:15507 THUMPD3 - THUMP domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_26621 chr2 38401814 38402004 + 12.36085 NA intron (NR_027252, intron 2 of 2) intron (NR_027252, intron 2 of 2) 43662 NR_027252 285154 Hs.353894 NM_173652 HPRD:14592 CYP1B1-AS1 C2orf58 CYP1B1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_41302 chr5 74532688 74532866 + 12.35674 NA promoter-TSS (NM_001164443) promoter-TSS (NM_001164443) -74 NM_001164443 256006 Hs.482533 NM_001164443 ENSG00000145700 ANKRD31 - ankyrin repeat domain 31 protein-coding 13-PTNLD9-TUMOR_peak_17649 chr15 74680483 74680663 + 12.35674 NA Intergenic MER115|DNA|hAT-Tip100 -20492 NM_000781 1583 Hs.303980 NM_000781 HPRD:00326 CYP11A1 CYP11A|CYPXIA1|P450SCC cytochrome P450, family 11, subfamily A, polypeptide 1 protein-coding 13-PTNLD9-TUMOR_peak_35123 chr3 94160079 94160267 + 12.35674 NA Intergenic Intergenic -378106 NM_001195643 200895 Hs.718516 NM_176815 HPRD:11246 DHFRL1 DHFRP4 dihydrofolate reductase-like 1 protein-coding 13-PTNLD9-TUMOR_peak_3415 chr1 147833250 147833399 + 12.35674 NA intron (NR_102404, intron 17 of 18).2 intron (NR_102404, intron 17 of 18).2 -26646 NR_049810 100847044 NR_049810 MIR5087 - microRNA 5087 ncRNA 13-PTNLD9-TUMOR_peak_28299 chr2 121796460 121796723 + 12.35674 NA Intergenic Intergenic 241724 NM_005270 2736 Hs.111867 NM_005270 HPRD:01312 GLI2 HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 13-PTNLD9-TUMOR_peak_52838 chr9 18459960 18460293 + 12.35674 NA Intergenic Intergenic -13953 NM_052866 92949 Hs.741483 NM_052866 HPRD:16462 ADAMTSL1 ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN ADAMTS-like 1 protein-coding 13-PTNLD9-TUMOR_peak_4780 chr1 186019606 186019778 + 12.35674 NA intron (NM_031935, intron 42 of 106) L2|LINE|L2 -245713 NM_001127709 10216 Hs.647723 NM_005807 HPRD:05047 PRG4 CACP|HAPO|JCAP|MSF|SZP|bG174L6.2 proteoglycan 4 protein-coding 13-PTNLD9-TUMOR_peak_7466 chr10 61725241 61725417 + 12.35674 NA Intergenic LTR81C|LTR|Gypsy -4658 NR_024340 283025 Hs.522955 NM_001017982 ENSG00000235931 C10orf40 - chromosome 10 open reading frame 40 ncRNA 13-PTNLD9-TUMOR_peak_56541 chrX 135213332 135213448 + 12.35674 NA Intergenic Tigger7|DNA|TcMar-Tigger -15471 NR_027621 2273 Hs.435369 NM_001449 HPRD:02157 FHL1 FHL-1|FHL1A|FHL1B|FLH1A|KYOT|SLIM|SLIM-1|SLIM1|SLIMMER|XMPMA four and a half LIM domains 1 protein-coding 13-PTNLD9-TUMOR_peak_31290 chr20 46333887 46334300 + 12.35674 NA intron (NM_198596, intron 3 of 20) intron (NM_198596, intron 3 of 20) 80715 NM_018837 55959 Hs.162016 NM_018837 HPRD:18130 SULF2 HSULF-2 sulfatase 2 protein-coding 13-PTNLD9-TUMOR_peak_13542 chr12 97092833 97093155 + 12.35674 NA Intergenic MER51A|LTR|ERV1 -208007 NM_001135177 121441 Hs.270084 NM_152905 HPRD:02655 NEDD1 GCP-WD|TUBGCP7 neural precursor cell expressed, developmentally down-regulated 1 protein-coding 13-PTNLD9-TUMOR_peak_38463 chr4 57410832 57411001 + 12.35674 NA intron (NM_001256475, intron 1 of 8) CpG 14141 NM_001256475 100506564 Hs.573073 NM_001256475 ENSG00000249693 THEGL - theg spermatid protein-like protein-coding 13-PTNLD9-TUMOR_peak_19322 chr16 50840358 50840652 + 12.35674 NA Intergenic Intergenic 64476 NM_001042412 1540 Hs.578973 NM_015247 HPRD:05427 CYLD BRSS|CDMT|CYLD1|CYLDI|EAC|MFT|MFT1|SBS|TEM|USPL2 cylindromatosis (turban tumor syndrome) protein-coding 13-PTNLD9-TUMOR_peak_50908 chr8 49834401 49834612 + 12.35674 NA promoter-TSS (NM_003068) promoter-TSS (NM_003068) -507 NM_003068 6591 Hs.360174 NM_003068 HPRD:03689 SNAI2 SLUG|SLUGH1|SNAIL2|WS2D snail family zinc finger 2 protein-coding 13-PTNLD9-TUMOR_peak_22493 chr18 5237791 5238176 + 12.35674 NA promoter-TSS (NR_026849) promoter-TSS (NR_026849) 45 NR_026849 147525 Hs.657197 NM_152471 LINC00526 C18orf18|HsT959 long intergenic non-protein coding RNA 526 ncRNA 13-PTNLD9-TUMOR_peak_9117 chr11 12835284 12835459 + 12.35674 NA intron (NM_021961, intron 3 of 12) intron (NM_021961, intron 3 of 12) 139402 NM_021961 7003 Hs.655331 NM_021961 HPRD:01802 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain family member 1 (SV40 transcriptional enhancer factor) protein-coding 13-PTNLD9-TUMOR_peak_4210 chr1 163804066 163804340 + 12.35674 NA Intergenic Intergenic -411222 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3, subunit J pseudogene pseudo 13-PTNLD9-TUMOR_peak_26124 chr2 11133314 11133579 + 12.35674 NA Intergenic Intergenic 81383 NM_002236 3754 Hs.23735 NM_002236 HPRD:04808 KCNF1 IK8|KCNF|KV5.1|kH1 potassium voltage-gated channel, subfamily F, member 1 protein-coding 13-PTNLD9-TUMOR_peak_30039 chr2 234156464 234156720 + 12.35674 NA Intergenic Intergenic -3625 NM_001190266 55054 Hs.529322 NM_017974 HPRD:16498 ATG16L1 APG16L|ATG16A|ATG16L|IBD10|WDR30 autophagy related 16-like 1 (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_56343 chrX 109472793 109473054 + 12.35674 NA intron (NM_001025580, intron 1 of 4) L1PA6|LINE|L1 -4635 NR_004379 692226 NR_004379 SNORD96B U96b small nucleolar RNA, C/D box 96B snoRNA 13-PTNLD9-TUMOR_peak_18026 chr15 94720429 94720667 + 12.35674 NA Intergenic Intergenic -69381 NR_120320 101927112 Hs.134687 NR_120320 ENSG00000259724 LOC101927112 - uncharacterized LOC101927112 ncRNA 13-PTNLD9-TUMOR_peak_44 chr1 901728 901941 + 12.34914 NA promoter-TSS (NM_001160184) promoter-TSS (NM_001160184) -43 NM_001160184 84069 Hs.528691 NM_032129 HPRD:13190 PLEKHN1 - pleckstrin homology domain containing, family N member 1 protein-coding 13-PTNLD9-TUMOR_peak_7233 chr10 47078779 47079007 + 12.34914 NA Intergenic LTR33|LTR|ERVL -4641 NM_005972 5540 Hs.524719 NM_005972 HPRD:03476 NPY4R NPY4-R|PP1|PPYR1|Y4 neuropeptide Y receptor Y4 protein-coding 13-PTNLD9-TUMOR_peak_33895 chr3 14494517 14494856 + 12.34914 NA intron (NR_103507, intron 5 of 13) intron (NR_103507, intron 5 of 13) 50610 NM_001134368 6533 Hs.529488 NM_003043 HPRD:01734 SLC6A6 TAUT solute carrier family 6 (neurotransmitter transporter), member 6 protein-coding 13-PTNLD9-TUMOR_peak_21591 chr17 55956533 55956760 + 12.33544 NA intron (NM_001292025, intron 3 of 10) MER117|DNA|hAT-Charlie 24104 NM_001292025 404093 Hs.46679 NM_001271875 HPRD:13098 CUEDC1 - CUE domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_10112 chr11 63435507 63435706 + 12.33544 NA intron (NM_001290048, intron 1 of 12) intron (NM_001290048, intron 1 of 12) 3596 NM_015459 25923 Hs.356719 NM_015459 HPRD:13170 ATL3 HSN1F atlastin GTPase 3 protein-coding 13-PTNLD9-TUMOR_peak_11129 chr11 107879931 107880090 + 12.33332 NA 5' UTR (NM_003478, exon 1 of 19) 5' UTR (NM_003478, exon 1 of 19) 602 NM_003478 8065 Hs.440320 NM_003478 HPRD:03444 CUL5 VACM-1|VACM1 cullin 5 protein-coding 13-PTNLD9-TUMOR_peak_15307 chr14 23294215 23294364 + 12.33332 NA Intergenic Intergenic -4803 NM_180982 122704 Hs.355935 NM_178336 HPRD:14770 MRPL52 - mitochondrial ribosomal protein L52 protein-coding 13-PTNLD9-TUMOR_peak_7673 chr10 73053494 73053700 + 12.33332 NA exon (NM_170744, exon 13 of 17) exon (NM_170744, exon 13 of 17) -25413 NR_033414 55315 Hs.438419 NM_018344 HPRD:11570 SLC29A3 ENT3|HCLAP|HJCD|PHID solute carrier family 29 (equilibrative nucleoside transporter), member 3 protein-coding 13-PTNLD9-TUMOR_peak_37002 chr3 184482947 184483200 + 12.33332 NA intron (NR_110043, intron 2 of 2) intron (NR_110043, intron 2 of 2) 7870 NR_110043 101928992 Hs.507129 NR_110043 ENSG00000229433 LOC101928992 - uncharacterized LOC101928992 ncRNA 13-PTNLD9-TUMOR_peak_19991 chr16 85648673 85648865 + 12.32994 NA intron (NM_001278184, intron 1 of 14) CpG-9602 1927 NM_001278184 23199 Hs.461647 NM_014615 HPRD:11066 GSE1 KIAA0182 Gse1 coiled-coil protein protein-coding 13-PTNLD9-TUMOR_peak_13768 chr12 109232189 109232515 + 12.32892 NA intron (NM_001161330, intron 2 of 13) intron (NM_001161330, intron 2 of 13) -11025 NM_001161331 54434 Hs.199763 NM_018984 HPRD:09486 SSH1 SSH1L slingshot protein phosphatase 1 protein-coding 13-PTNLD9-TUMOR_peak_49802 chr7 155458720 155458853 + 12.32892 NA intron (NM_053043, intron 2 of 17) MLT2B1|LTR|ERVL 21583 NM_053043 155435 Hs.591815 NM_053043 HPRD:17310 RBM33 PRR8 RNA binding motif protein 33 protein-coding 13-PTNLD9-TUMOR_peak_5230 chr1 205782802 205782945 + 12.32892 NA promoter-TSS (NM_173854) promoter-TSS (NM_173854) -712 NM_173854 254428 Hs.20274 NM_173854 HPRD:15388 SLC41A1 MgtE solute carrier family 41 (magnesium transporter), member 1 protein-coding 13-PTNLD9-TUMOR_peak_27289 chr2 74136489 74136756 + 12.32892 NA intron (NM_001615, intron 5 of 8) Tigger3|DNA|TcMar-Tigger 16529 NM_001199893 72 Hs.516105 NM_001615 HPRD:00016 ACTG2 ACT|ACTA3|ACTE|ACTL3|ACTSG|VSCM actin, gamma 2, smooth muscle, enteric protein-coding 13-PTNLD9-TUMOR_peak_6105 chr1 244014343 244014487 + 12.32892 NA Intergenic CpG -7529 NM_001206729 10000 Hs.498292 NM_005465 HPRD:06441 AKT3 MPPH|PKB-GAMMA|PKBG|PRKBG|RAC-PK-gamma|RAC-gamma|STK-2 v-akt murine thymoma viral oncogene homolog 3 protein-coding 13-PTNLD9-TUMOR_peak_56 chr1 1009584 1009791 + 12.32273 NA promoter-TSS (NM_001205252) promoter-TSS (NM_001205252) 0 NM_001205252 401934 Hs.568137 NM_001205252 RNF223 - ring finger protein 223 protein-coding 13-PTNLD9-TUMOR_peak_23885 chr19 9247315 9247486 + 12.32273 NA Intergenic MER20|DNA|hAT-Charlie -3656 NM_020933 57693 Hs.465829 NM_020933 HPRD:11706 ZNF317 - zinc finger protein 317 protein-coding 13-PTNLD9-TUMOR_peak_17482 chr15 67066806 67066916 + 12.32134 NA intron (NR_027654, intron 4 of 4) intron (NR_027654, intron 4 of 4) 65931 NM_001142861 4091 Hs.153863 NM_005585 HPRD:04240 SMAD6 AOVD2|HsT17432|MADH6|MADH7 SMAD family member 6 protein-coding 13-PTNLD9-TUMOR_peak_52760 chr9 13750261 13750566 + 12.32134 NA Intergenic Intergenic -177557 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA 13-PTNLD9-TUMOR_peak_17322 chr15 55513464 55513686 + 12.32134 NA intron (NM_183234, intron 6 of 6) intron (NM_183234, intron 6 of 6) -24344 NM_016304 51187 Hs.274772 NM_016304 RSL24D1 C15orf15|HRP-L30-iso|L30|RLP24|RPL24|RPL24L|TVAS3 ribosomal L24 domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_46294 chr6 150730098 150730252 + 12.32134 NA Intergenic LTR33A_|LTR|ERVL 40147 NM_001164695 389434 Hs.310225 NM_203395 HPRD:16668 IYD C6orf71|DEHAL1|TDH4|dJ422F24.1 iodotyrosine deiodinase protein-coding 13-PTNLD9-TUMOR_peak_7983 chr10 91038057 91038183 + 12.32134 NA Intergenic Intergenic -23586 NM_001547 3433 Hs.437609 NM_001547 HPRD:00913 IFIT2 G10P2|GARG-39|IFI-54|IFI-54K|IFI54|IFIT-2|ISG-54 K|ISG-54K|ISG54|P54|cig42 interferon-induced protein with tetratricopeptide repeats 2 protein-coding 13-PTNLD9-TUMOR_peak_35079 chr3 86972170 86972449 + 12.32134 NA Intergenic Intergenic 67948 NM_016206 389136 Hs.606507 NM_016206 HPRD:13431 VGLL3 VGL-3|VGL3 vestigial-like family member 3 protein-coding 13-PTNLD9-TUMOR_peak_18908 chr16 29040657 29040905 + 12.32134 NA Intergenic Intergenic 44394 NM_014387 27040 Hs.632179 NM_014387 HPRD:03832 LAT LAT1|pp36 linker for activation of T cells protein-coding 13-PTNLD9-TUMOR_peak_34945 chr3 71865385 71865513 + 12.32134 NA Intergenic Intergenic -31092 NM_021935 60675 Hs.528665 NM_021935 HPRD:08446 PROK2 BV8|HH4|KAL4|MIT1|PK2 prokineticin 2 protein-coding 13-PTNLD9-TUMOR_peak_46575 chr6 169613173 169613361 + 12.32134 NA Intergenic Intergenic 40942 NM_003247 7058 Hs.371147 NM_003247 HPRD:01766 THBS2 TSP2 thrombospondin 2 protein-coding 13-PTNLD9-TUMOR_peak_8055 chr10 97007037 97007271 + 12.32134 NA intron (NM_020992, intron 4 of 6) intron (NM_020992, intron 4 of 6) 43751 NM_020992 9124 Hs.368525 NM_020992 HPRD:09326 PDLIM1 CLIM1|CLP-36|CLP36|HEL-S-112|hCLIM1 PDZ and LIM domain 1 protein-coding 13-PTNLD9-TUMOR_peak_7567 chr10 70166650 70167224 + 12.32021 NA promoter-TSS (NM_017987) promoter-TSS (NM_017987) 9 NR_103475 55680 Hs.653144 NM_017987 HPRD:11526 RUFY2 RABIP4R|ZFYVE13 RUN and FYVE domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_3638 chr1 151735831 151736154 + 12.32021 NA promoter-TSS (NM_001301371) promoter-TSS (NM_001301371) 36 NM_001301371 51686 Hs.713789 NM_016178 HPRD:18670 OAZ3 AZ3|OAZ-t|TISP15 ornithine decarboxylase antizyme 3 protein-coding 13-PTNLD9-TUMOR_peak_9923 chr11 58735779 58736137 + 12.32021 NA intron (NR_033853, intron 5 of 5) intron (NR_033853, intron 5 of 5) 25236 NM_080661 92292 Hs.38085 NM_080661 HPRD:14447 GLYATL1 GATF-C|GNAT glycine-N-acyltransferase-like 1 protein-coding 13-PTNLD9-TUMOR_peak_54841 chr9 130911301 130911749 + 12.32021 NA promoter-TSS (NM_005564) promoter-TSS (NM_005564) -207 NM_005564 3934 Hs.204238 NM_005564 HPRD:02551 LCN2 24p3|MSFI|NGAL lipocalin 2 protein-coding 13-PTNLD9-TUMOR_peak_48323 chr7 92747341 92747484 + 12.32021 NA promoter-TSS (NM_001193307) promoter-TSS (NM_001193307) -76 NM_017654 54809 Hs.65641 NM_017654 HPRD:11531 SAMD9 C7orf5|DRIF1|NFTC|OEF1|OEF2 sterile alpha motif domain containing 9 protein-coding 13-PTNLD9-TUMOR_peak_4148 chr1 161416920 161417146 + 12.31743 NA Intergenic CpG -58172 NM_021642 2212 Hs.352642 NM_021642 HPRD:00906 FCGR2A CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|IGFR2 Fc fragment of IgG, low affinity IIa, receptor (CD32) protein-coding 13-PTNLD9-TUMOR_peak_9368 chr11 27486098 27486247 + 12.31622 NA intron (NM_018490, intron 1 of 17) intron (NM_018490, intron 1 of 17) 8162 NM_018490 55366 Hs.502176 NM_018490 HPRD:05978 LGR4 BNMD17|GPR48 leucine-rich repeat containing G protein-coupled receptor 4 protein-coding 13-PTNLD9-TUMOR_peak_3724 chr1 153540293 153540507 + 12.30903 NA Intergenic Intergenic -2094 NM_005978 6273 Hs.516484 NM_005978 HPRD:01508 S100A2 CAN19|S100L S100 calcium binding protein A2 protein-coding 13-PTNLD9-TUMOR_peak_4363 chr1 169555572 169555841 + 12.30726 NA promoter-TSS (NM_000130) promoter-TSS (NM_000130) 63 NM_000130 2153 Hs.30054 NM_000130 F5 FVL|PCCF|RPRGL1|THPH2 coagulation factor V (proaccelerin, labile factor) protein-coding 13-PTNLD9-TUMOR_peak_20039 chr16 87799560 87799713 + 12.30726 NA promoter-TSS (NM_017566) promoter-TSS (NM_017566) -38 NM_001184856 54758 Hs.123450 NM_017566 HPRD:11180 KLHDC4 - kelch domain containing 4 protein-coding 13-PTNLD9-TUMOR_peak_33743 chr3 10641963 10642142 + 12.30726 NA Intergenic Intergenic 26440 NR_046766 100874325 Hs.143004 NR_046766 ATP2B2-IT2 - ATP2B2 intronic transcript 2 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_37828 chr4 7330795 7330971 + 12.30726 NA intron (NM_020777, intron 1 of 26) intron (NM_020777, intron 1 of 26) 18706 NR_039961 100616471 NR_039961 MIR4798 - microRNA 4798 ncRNA 13-PTNLD9-TUMOR_peak_42718 chr5 152931238 152931626 + 12.30726 NA intron (NM_001258020, intron 3 of 16) intron (NM_001258020, intron 3 of 16) 59700 NM_001258022 2890 Hs.519693 NM_000827 HPRD:00695 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate receptor, ionotropic, AMPA 1 protein-coding 13-PTNLD9-TUMOR_peak_41772 chr5 112849309 112849690 + 12.30726 NA 5' UTR (NM_022828, exon 1 of 30) 5' UTR (NM_022828, exon 1 of 30) 108 NM_022828 64848 Hs.231942 NM_022828 HPRD:11690 YTHDC2 CAHL YTH domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_55025 chr9 138843842 138844097 + 12.30726 NA intron (NM_016172, intron 3 of 9) intron (NM_016172, intron 3 of 9) 9257 NM_016172 10422 Hs.9194 NM_016172 HPRD:12170 UBAC1 GBDR1|UBADC1 UBA domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_12855 chr12 53241206 53241490 + 12.30726 NA intron (NM_001300814, intron 2 of 8) intron (NM_001300814, intron 2 of 8) 719 NM_001300814 196374 Hs.665267 NM_173352 HPRD:17171 KRT78 CK-78|K5B|K78|Kb40 keratin 78 protein-coding 13-PTNLD9-TUMOR_peak_54027 chr9 95922362 95922465 + 12.30726 NA Intergenic Intergenic -24799 NM_006648 65268 Hs.654856 NM_006648 HPRD:06951 WNK2 NY-CO-43|P/OKcl.13|PRKWNK2|SDCCAG43 WNK lysine deficient protein kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_22205 chr17 77826624 77826801 + 12.30726 NA Intergenic MER63C|DNA|hAT-Blackjack -13499 NM_003655 8535 Hs.405046 NM_003655 HPRD:04357 CBX4 NBP16|PC2 chromobox homolog 4 protein-coding 13-PTNLD9-TUMOR_peak_1576 chr1 45671753 45672331 + 12.30726 NA 5' UTR (NM_020883, exon 1 of 14) 5' UTR (NM_020883, exon 1 of 14) 208 NM_020883 57643 Hs.656613 NM_020883 ENSG00000162415 ZSWIM5 - zinc finger, SWIM-type containing 5 protein-coding 13-PTNLD9-TUMOR_peak_26159 chr2 12461257 12461749 + 12.30726 NA intron (NR_110196, intron 4 of 5) intron (NR_110196, intron 4 of 5) 314261 NR_110196 100506457 Hs.197824 NR_110196 ENSG00000224184 LOC100506457 - uncharacterized LOC100506457 ncRNA 13-PTNLD9-TUMOR_peak_30938 chr20 35486968 35487170 + 12.30519 NA intron (NM_080627, intron 1 of 14) intron (NM_080627, intron 1 of 14) 1207 NM_199181 140710 Hs.460807 NM_080627 HPRD:11116 SOGA1 C20orf117|KIAA0889|SOGA suppressor of glucose, autophagy associated 1 protein-coding 13-PTNLD9-TUMOR_peak_22016 chr17 73689730 73689983 + 12.30519 NA intron (NM_013260, intron 4 of 10) intron (NM_013260, intron 4 of 10) 26457 NM_013260 29115 Hs.655088 NM_013260 HPRD:17094 SAP30BP HCNGP|HTRG|HTRP SAP30 binding protein protein-coding 13-PTNLD9-TUMOR_peak_29794 chr2 217530008 217530210 + 12.30181 NA TTS (NM_000597) TTS (NM_000597) 30163 NM_000599 3488 Hs.607212 NM_000599 HPRD:00901 IGFBP5 IBP5 insulin-like growth factor binding protein 5 protein-coding 13-PTNLD9-TUMOR_peak_40355 chr5 13735917 13736027 + 12.30181 NA exon (NM_001369, exon 67 of 79) exon (NM_001369, exon 67 of 79) 208617 NM_001369 1767 Hs.212360 NM_001369 HPRD:04514 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein, axonemal, heavy chain 5 protein-coding 13-PTNLD9-TUMOR_peak_45075 chr6 43231332 43231464 + 12.30181 NA intron (NM_032538, intron 13 of 14) intron (NM_032538, intron 13 of 14) 20176 NM_032538 84630 Hs.485436 NM_032538 HPRD:11653 TTBK1 BDTK tau tubulin kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_11249 chr11 113272495 113272703 + 12.30181 NA Intergenic Intergenic 14086 NM_178510 255239 Hs.448473 NM_178510 HPRD:10580 ANKK1 PKK2 ankyrin repeat and kinase domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_13805 chr12 110338012 110338159 + 12.30181 NA promoter-TSS (NM_032300) promoter-TSS (NM_032300) 6 NM_001143852 84260 Hs.410924 NM_032300 HPRD:14403 TCHP TpMs trichoplein, keratin filament binding protein-coding 13-PTNLD9-TUMOR_peak_51380 chr8 100787159 100787386 + 12.30181 NA intron (NM_152564, intron 40 of 61) L2c|LINE|L2 118970 NM_004374 1345 Hs.351875 NM_004374 HPRD:00494 COX6C - cytochrome c oxidase subunit VIc protein-coding 13-PTNLD9-TUMOR_peak_229 chr1 7196379 7196565 + 12.30181 NA intron (NM_015215, intron 4 of 22) L2|LINE|L2 351088 NR_038934 23261 Hs.397705 NM_015215 HPRD:16681 CAMTA1 CANPMR calmodulin binding transcription activator 1 protein-coding 13-PTNLD9-TUMOR_peak_24359 chr19 18016553 18016677 + 12.30181 NA Intergenic AluY|SINE|Alu -27209 NM_001136203 115098 Hs.100043 NM_138442 HPRD:14008 CCDC124 - coiled-coil domain containing 124 protein-coding 13-PTNLD9-TUMOR_peak_19616 chr16 68027266 68027369 + 12.30181 NA intron (NM_022355, intron 1 of 10) CpG 6104 NM_022355 64174 Hs.372633 NM_022355 HPRD:07011 DPEP2 MBD2 dipeptidase 2 protein-coding 13-PTNLD9-TUMOR_peak_11327 chr11 116960597 116960804 + 12.30181 NA intron (NM_025164, intron 1 of 23) intron (NM_025164, intron 1 of 23) 8431 NM_025164 23387 Hs.167451 NM_025164 HPRD:11121 SIK3 QSK|SIK-3 SIK family kinase 3 protein-coding 13-PTNLD9-TUMOR_peak_9232 chr11 18289550 18289715 + 12.30181 NA intron (NM_199161, intron 2 of 3) MER5B|DNA|hAT-Charlie 1824 NM_001178006 6288 Hs.632144 NM_000331 HPRD:00097 SAA1 PIG4|SAA|SAA2|TP53I4 serum amyloid A1 protein-coding 13-PTNLD9-TUMOR_peak_34216 chr3 33156725 33156884 + 12.29862 NA intron (NM_006371, intron 1 of 6) intron (NM_006371, intron 1 of 6) 1354 NM_006371 10491 Hs.517888 NM_006371 HPRD:16110 CRTAP CASP|LEPREL3|OI7 cartilage associated protein protein-coding 13-PTNLD9-TUMOR_peak_3966 chr1 156695722 156695866 + 12.29842 NA intron (NM_030980, intron 1 of 2) intron (NM_030980, intron 1 of 2) 1911 NM_030980 81875 Hs.301904 NM_030980 HPRD:07788 ISG20L2 - interferon stimulated exonuclease gene 20kDa-like 2 protein-coding 13-PTNLD9-TUMOR_peak_18922 chr16 29283061 29283237 + 12.29362 NA Intergenic Intergenic -30459 NR_002939 440352 Hs.658149 NR_002939 SNX29P2 RUNDC2C sorting nexin 29 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_21211 chr17 43250180 43250550 + 12.28972 NA Intergenic Intergenic 12101 NM_144608 124790 Hs.56382 NM_144608 HPRD:08129 HEXIM2 - hexamethylene bis-acetamide inducible 2 protein-coding 13-PTNLD9-TUMOR_peak_45451 chr6 70506064 70506205 + 12.28483 NA intron (NM_018368, intron 1 of 15) intron (NM_018368, intron 1 of 15) 915 NM_018368 55788 Hs.271643 NM_018368 HPRD:12877 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_36223 chr3 141807401 141807586 + 12.28483 NA intron (NM_001178138, intron 3 of 13) FRAM|SINE|Alu -59986 NM_006286 7029 Hs.379018 NM_006286 HPRD:03696 TFDP2 DP2 transcription factor Dp-2 (E2F dimerization partner 2) protein-coding 13-PTNLD9-TUMOR_peak_28699 chr2 150278891 150279272 + 12.28483 NA intron (NM_194317, intron 1 of 4) L1MA8|LINE|L1 92052 NM_194317 130574 Hs.21929 NM_194317 HPRD:14676 LYPD6 - LY6/PLAUR domain containing 6 protein-coding 13-PTNLD9-TUMOR_peak_21973 chr17 73127500 73127970 + 12.28483 NA exon (NM_001252377, exon 1 of 4) exon (NM_001252377, exon 1 of 4) 155 NM_001252377 30833 Hs.67201 NM_014595 HPRD:11833 NT5C DNT|DNT1|HEL74|P5N2|PN-I|PN-II|UMPH2|cdN|dNT-1 5', 3'-nucleotidase, cytosolic protein-coding 13-PTNLD9-TUMOR_peak_19943 chr16 84676784 84676997 + 12.28444 NA Intergenic Intergenic -5241 NM_024731 79786 Hs.222731 NM_024731 HPRD:12675 KLHL36 C16orf44 kelch-like family member 36 protein-coding 13-PTNLD9-TUMOR_peak_20595 chr17 18762800 18762958 + 12.28444 NA intron (NM_001243941, intron 1 of 9) intron (NM_001243941, intron 1 of 9) 1498 NM_001243941 5636 Hs.632236 NM_002767 HPRD:04789 PRPSAP2 PAP41 phosphoribosyl pyrophosphate synthetase-associated protein 2 protein-coding 13-PTNLD9-TUMOR_peak_19331 chr16 52028534 52028822 + 12.28444 NA Intergenic Intergenic 79169 NM_001242473 388276 Hs.534669 NM_001242473 ENSG00000261190 C16orf97 - chromosome 16 open reading frame 97 protein-coding 13-PTNLD9-TUMOR_peak_6661 chr10 22907142 22907429 + 12.28444 NA intron (NM_005028, intron 1 of 9) intron (NM_005028, intron 1 of 9) 96218 NM_005028 5305 Hs.57079 NM_005028 HPRD:11931 PIP4K2A PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK phosphatidylinositol-5-phosphate 4-kinase, type II, alpha protein-coding 13-PTNLD9-TUMOR_peak_48140 chr7 80110618 80110778 + 12.28444 NA intron (NM_001102386, intron 3 of 7) MER4D|LTR|ERV1 30544 NM_001102386 346562 Hs.335049 NM_001102386 ENSG00000214415 GNAT3 GDCA guanine nucleotide binding protein, alpha transducing 3 protein-coding 13-PTNLD9-TUMOR_peak_24937 chr19 39689818 39689948 + 12.28444 NA exon (NM_001001414, exon 4 of 6) exon (NM_001001414, exon 4 of 6) 2279 NM_001001414 342897 Hs.726934 NM_001001414 HPRD:17357 NCCRP1 FBXO50|NCCRP-1 non-specific cytotoxic cell receptor protein 1 homolog (zebrafish) protein-coding 13-PTNLD9-TUMOR_peak_31765 chr20 60953321 60953490 + 12.28358 NA Intergenic Intergenic -8716 NM_001024 6227 Hs.190968 NM_001024 HPRD:01605 RPS21 HLDF|S21 ribosomal protein S21 protein-coding 13-PTNLD9-TUMOR_peak_7819 chr10 79374587 79374708 + 12.27923 NA intron (NM_001271519, intron 1 of 28) intron (NM_001271519, intron 1 of 28) 22930 NM_001271520 3778 Hs.144795 NM_002247 HPRD:15967 KCNMA1 BKTM|KCa1.1|MaxiK|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|mSLO1 potassium large conductance calcium-activated channel, subfamily M, alpha member 1 protein-coding 13-PTNLD9-TUMOR_peak_34041 chr3 22030081 22030261 + 12.27923 NA Intergenic L1PA2|LINE|L1 31540 NR_046876 100874221 Hs.160616 NR_046876 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_32687 chr22 18515204 18515611 + 12.27923 NA intron (NR_024417, intron 1 of 1) (TAAG)n|Simple_repeat|Simple_repeat 3256 NR_024417 100192420 Hs.589947 NR_024417 ENSG00000235295 FLJ41941 - uncharacterized LOC100192420 ncRNA 13-PTNLD9-TUMOR_peak_23602 chr19 1132218 1132399 + 12.27923 NA promoter-TSS (NM_001100122) promoter-TSS (NM_001100122) -35 NM_001100122 22904 Hs.408708 NM_014963 HPRD:17203 SBNO2 KIAA0963|SNO|STNO strawberry notch homolog 2 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_7194 chr10 45470484 45470606 + 12.27461 NA intron (NM_032023, intron 3 of 10) GC_rich|Low_complexity|Low_complexity 3785 NM_007021 11067 Hs.93675 NM_007021 HPRD:12558 C10orf10 DEPP|FIG|Fseg chromosome 10 open reading frame 10 protein-coding 13-PTNLD9-TUMOR_peak_32828 chr22 21474111 21474346 + 12.26933 NA intron (NR_037566, intron 5 of 5) intron (NR_037566, intron 5 of 5) 16923 NR_037566 400892 Hs.745077 NM_207474 BCRP2 BCR-2|BCR2|BCRL2 breakpoint cluster region pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_6089 chr1 243221117 243221346 + 12.26391 NA intron (NR_029401, intron 16 of 17) intron (NR_029401, intron 16 of 17) 43815 NR_029401 731275 Hs.722350 NR_029401 LINC01347 - long intergenic non-protein coding RNA 1347 ncRNA 13-PTNLD9-TUMOR_peak_17784 chr15 81589724 81590027 + 12.26322 NA intron (NM_001172128, intron 13 of 18) intron (NM_001172128, intron 13 of 18) 621 NM_004513 3603 Hs.459095 NM_004513 HPRD:04329 IL16 LCF|NIL16|PRIL16|prIL-16 interleukin 16 protein-coding 13-PTNLD9-TUMOR_peak_34169 chr3 30653457 30653634 + 12.26034 NA intron (NM_003242, intron 1 of 6) intron (NM_003242, intron 1 of 6) 5551 NM_003242 7048 Hs.82028 NM_003242 HPRD:01823 TGFBR2 AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TGFR-2|TGFbeta-RII transforming growth factor, beta receptor II (70/80kDa) protein-coding 13-PTNLD9-TUMOR_peak_39650 chr4 152986020 152986193 + 12.26034 NA Intergenic Intergenic -35799 NR_121628 100996286 Hs.322462 NR_121627 ENSG00000245954 LOC100996286 - uncharacterized LOC100996286 ncRNA 13-PTNLD9-TUMOR_peak_8386 chr10 116279039 116279313 + 12.26034 NA intron (NM_001003407, intron 6 of 21) intron (NM_001003407, intron 6 of 21) 7509 NM_006720 3983 Hs.438236 NM_002313 HPRD:03819 ABLIM1 ABLIM|LIMAB1|LIMATIN|abLIM-1 actin binding LIM protein 1 protein-coding 13-PTNLD9-TUMOR_peak_12920 chr12 54455202 54455410 + 12.26034 NA intron (NR_026655, intron 1 of 1) intron (NR_026655, intron 1 of 1) 3268 NR_026655 440101 Hs.350378 NR_026655 ENSG00000248265 FLJ12825 - uncharacterized LOC440101 ncRNA 13-PTNLD9-TUMOR_peak_24653 chr19 31645097 31645253 + 12.26034 NA Intergenic Intergenic 195015 NM_020856 57616 Hs.278436 NM_020856 HPRD:18351 TSHZ3 TSH3|ZNF537 teashirt zinc finger homeobox 3 protein-coding 13-PTNLD9-TUMOR_peak_14530 chr13 30995727 30995914 + 12.26034 NA intron (NR_125771, intron 1 of 1) CpG 561 NR_125771 103724387 NR_125771 LINC01058 - long intergenic non-protein coding RNA 1058 ncRNA 13-PTNLD9-TUMOR_peak_8462 chr10 121497491 121497641 + 12.26034 NA intron (NM_014937, intron 1 of 19) intron (NM_014937, intron 1 of 19) 12007 NM_014937 22876 Hs.369755 NM_014937 HPRD:11048 INPP5F MSTPO47|SAC2|hSAC2 inositol polyphosphate-5-phosphatase F protein-coding 13-PTNLD9-TUMOR_peak_46056 chr6 131646670 131646885 + 12.26034 NA Intergenic HERVH-int|LTR|ERV1 75478 NM_004842 9465 Hs.486483 NM_004842 HPRD:16065 AKAP7 AKAP15|AKAP18 A kinase (PRKA) anchor protein 7 protein-coding 13-PTNLD9-TUMOR_peak_48808 chr7 107998948 107999321 + 12.26034 NA intron (NM_005010, intron 2 of 27) intron (NM_005010, intron 2 of 27) 97707 NM_001193584 4897 Hs.21422 NM_005010 HPRD:07207 NRCAM - neuronal cell adhesion molecule protein-coding 13-PTNLD9-TUMOR_peak_14875 chr13 76334385 76334755 + 12.26034 NA promoter-TSS (NM_015842) promoter-TSS (NM_015842) -227 NM_015842 4008 Hs.207631 NM_005358 HPRD:05078 LMO7 FBX20|FBXO20|LOMP LIM domain 7 protein-coding 13-PTNLD9-TUMOR_peak_2812 chr1 110739664 110739775 + 12.26034 NA intron (NM_001010898, intron 10 of 11) intron (NM_001010898, intron 10 of 11) 12890 NR_046546 100873974 Hs.130515 NR_046546 KCNC4-AS1 - KCNC4 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_39656 chr4 153181105 153181327 + 12.26034 NA Intergenic Intergenic -77591 NR_104273 102191832 Hs.712524 NR_104273 ENSG00000270751 DEAR DEspR dual endothelin-1(VEGFsp)/angiotensin II receptor pseudogene pseudo 13-PTNLD9-TUMOR_peak_44828 chr6 36727056 36727174 + 12.26034 NA intron (NM_020939, intron 12 of 20) intron (NM_020939, intron 12 of 20) 61487 NM_001257357 401258 Hs.485258 NM_207498 RAB44 RASD3|RASL13|dJ431A14.3 RAB44, member RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_24902 chr19 39070036 39070220 + 12.26034 NA intron (NM_000540, intron 99 of 105) AluSx|SINE|Alu 38547 NM_007181 11184 Hs.95424 NM_007181 HPRD:03583 MAP4K1 HPK1 mitogen-activated protein kinase kinase kinase kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_29475 chr2 198753838 198753984 + 12.26034 NA intron (NM_006226, intron 1 of 5) MIR3|SINE|MIR 84485 NM_006226 5334 Hs.153322 NM_006226 PLCL1 PLCE|PLCL|PLDL1|PPP1R127|PRIP phospholipase C-like 1 protein-coding 13-PTNLD9-TUMOR_peak_54392 chr9 111864248 111864414 + 12.26034 NA intron (NM_032012, intron 3 of 17) intron (NM_032012, intron 3 of 17) 17894 NM_032012 23731 Hs.308074 NM_032012 HPRD:09866 TMEM245 C9orf5|CG-2|CG2 transmembrane protein 245 protein-coding 13-PTNLD9-TUMOR_peak_10425 chr11 68868988 68869216 + 12.25832 NA Intergenic Intergenic 52752 NM_139075 219931 Hs.131851 NM_139075 TPCN2 SHEP10|TPC2 two pore segment channel 2 protein-coding 13-PTNLD9-TUMOR_peak_11190 chr11 111432699 111433051 + 12.25832 NA TTS (NM_001258391) TTS (NM_001258391) 21642 NM_178834 143903 Hs.503831 NM_178834 HPRD:17299 LAYN - layilin protein-coding 13-PTNLD9-TUMOR_peak_29405 chr2 192788502 192788626 + 12.25832 NA Intergenic Intergenic -76558 NM_004657 8436 Hs.26530 NM_004657 HPRD:09470 SDPR CAVIN2|PS-p68|SDR|cavin-2 serum deprivation response protein-coding 13-PTNLD9-TUMOR_peak_12638 chr12 46553898 46554167 + 12.25832 NA Intergenic Intergenic 106246 NM_001278389 81539 Hs.533770 NM_030674 HPRD:12245 SLC38A1 ATA1|NAT2|SAT1|SNAT1 solute carrier family 38, member 1 protein-coding 13-PTNLD9-TUMOR_peak_55889 chrX 53215616 53215851 + 12.25832 NA Intergenic ERVL-E-int|LTR|ERVL 8937 NR_106955 102465539 NR_106955 MIR6895 hsa-mir-6895 microRNA 6895 ncRNA 13-PTNLD9-TUMOR_peak_12380 chr12 27496624 27496855 + 12.25832 NA intron (NM_001248003, intron 1 of 14) intron (NM_001248003, intron 1 of 14) 10952 NM_001248002 56938 Hs.445447 NM_020183 ARNTL2 BMAL2|CLIF|MOP9|PASD9|bHLHe6 aryl hydrocarbon receptor nuclear translocator-like 2 protein-coding 13-PTNLD9-TUMOR_peak_50396 chr8 26253174 26253563 + 12.25832 NA intron (NM_004331, intron 3 of 5) L1PA2|LINE|L1 12845 NM_004331 665 Hs.131226 NM_004331 HPRD:07288 BNIP3L BNIP3a|NIX BCL2/adenovirus E1B 19kDa interacting protein 3-like protein-coding 13-PTNLD9-TUMOR_peak_5433 chr1 220921517 220922236 + 12.25832 NA exon (NM_017898, exon 1 of 8) exon (NM_017898, exon 1 of 8) 200 NM_017898 54996 Hs.369042 NM_017898 HPRD:08628 MARC2 MOSC2 mitochondrial amidoxime reducing component 2 protein-coding 13-PTNLD9-TUMOR_peak_15101 chr13 110658712 110658925 + 12.25832 NA Intergenic Intergenic -219904 NM_003749 8660 Hs.442344 NM_003749 HPRD:02878 IRS2 IRS-2 insulin receptor substrate 2 protein-coding 13-PTNLD9-TUMOR_peak_38097 chr4 23730086 23730402 + 12.25832 NA Intergenic Intergenic 161456 NM_013261 10891 Hs.527078 NM_013261 HPRD:05155 PPARGC1A LEM6|PGC-1(alpha)|PGC-1v|PGC1|PGC1A|PPARGC1 peroxisome proliferator-activated receptor gamma, coactivator 1 alpha protein-coding 13-PTNLD9-TUMOR_peak_36894 chr3 181341799 181342028 + 12.25832 NA intron (NR_075090, intron 2 of 2) L2c|LINE|L2 13791 NR_004053 347689 Hs.654932 NR_004053 SOX2-OT NCRNA00043|SOX2OT SOX2 overlapping transcript ncRNA 13-PTNLD9-TUMOR_peak_25181 chr19 46714461 46714754 + 12.25832 NA intron (NR_027003, intron 1 of 5) intron (NR_027003, intron 1 of 5) 1108 NR_027003 93429 Hs.569940 NR_027003 ENSG00000268460 DKFZp434J0226 - uncharacterized LOC93429 ncRNA 13-PTNLD9-TUMOR_peak_49360 chr7 139759250 139759420 + 12.25272 NA intron (NM_022750, intron 1 of 11) intron (NM_022750, intron 1 of 11) 4186 NM_022750 64761 Hs.12646 NM_022750 HPRD:15696 PARP12 ARTD12|MST109|MSTP109|ZC3H1|ZC3HDC1 poly (ADP-ribose) polymerase family, member 12 protein-coding 13-PTNLD9-TUMOR_peak_801 chr1 27334783 27334996 + 12.25062 NA intron (NM_052943, intron 1 of 1) intron (NM_052943, intron 1 of 1) 4444 NM_052943 115572 Hs.632378 NM_052943 HPRD:16882 FAM46B - family with sequence similarity 46, member B protein-coding 13-PTNLD9-TUMOR_peak_31093 chr20 40858871 40858997 + 12.24732 NA intron (NM_133170, intron 16 of 31) intron (NM_133170, intron 16 of 31) -455189 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 13-PTNLD9-TUMOR_peak_51312 chr8 95070676 95070857 + 12.24732 NA Intergenic Intergenic 141487 NM_001161781 54704 Hs.22265 NM_018444 HPRD:16185 PDP1 PDH|PDP|PDPC|PPM2C pyruvate dehyrogenase phosphatase catalytic subunit 1 protein-coding 13-PTNLD9-TUMOR_peak_15758 chr14 52519108 52519404 + 12.24732 NA intron (NM_007361, intron 5 of 21) intron (NM_007361, intron 5 of 21) 16690 NM_007361 22795 Hs.369840 NM_007361 HPRD:05654 NID2 NID-2 nidogen 2 (osteonidogen) protein-coding 13-PTNLD9-TUMOR_peak_22576 chr18 10235209 10235365 + 12.24732 NA Intergenic Intergenic 179080 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 13-PTNLD9-TUMOR_peak_32854 chr22 21898831 21898949 + 12.24732 NA Intergenic Intergenic -4846 NM_001256355 7332 Hs.108104 NM_003347 HPRD:04762 UBE2L3 E2-F1|L-UBC|UBCH7|UbcM4 ubiquitin-conjugating enzyme E2L 3 protein-coding 13-PTNLD9-TUMOR_peak_31388 chr20 48421889 48422089 + 12.24732 NA Intergenic Tigger3a|DNA|TcMar-Tigger -7261 NR_048538 23315 Hs.444202 NM_015266 HPRD:18062 SLC9A8 NHE-8|NHE8 solute carrier family 9, subfamily A (NHE8, cation proton antiporter 8), member 8 protein-coding 13-PTNLD9-TUMOR_peak_43881 chr6 14117875 14118049 + 12.24732 NA promoter-TSS (NM_004233) promoter-TSS (NM_004233) 97 NM_004233 9308 Hs.595133 NM_004233 HPRD:05170 CD83 BL11|HB15 CD83 molecule protein-coding 13-PTNLD9-TUMOR_peak_34410 chr3 45224783 45225024 + 12.24732 NA Intergenic Intergenic -36989 NM_178181 64866 Hs.476093 NM_022842 HPRD:16696 CDCP1 CD318|SIMA135|TRASK CUB domain containing protein 1 protein-coding 13-PTNLD9-TUMOR_peak_42053 chr5 132155923 132156069 + 12.24732 NA Intergenic Intergenic 6006 NM_133456 134549 Hs.519574 NM_133456 HPRD:10655 SHROOM1 APXL2 shroom family member 1 protein-coding 13-PTNLD9-TUMOR_peak_23533 chr18 77336297 77336644 + 12.24732 NA Intergenic Intergenic -103331 NM_004715 9150 Hs.465490 NM_004715 HPRD:05377 CTDP1 CCFDN|FCP1 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1 protein-coding 13-PTNLD9-TUMOR_peak_41088 chr5 66125745 66125931 + 12.24732 NA intron (NM_015183, intron 1 of 27) intron (NM_015183, intron 1 of 27) 1234 NM_015183 375449 Hs.595458 NM_015183 HPRD:14195 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 13-PTNLD9-TUMOR_peak_48540 chr7 100399889 100400129 + 12.24732 NA TTS (NM_004444) TTS (NM_004444) 25134 NM_004444 2050 Hs.437008 NM_004444 HPRD:02481 EPHB4 HTK|MYK1|TYRO11 EPH receptor B4 protein-coding 13-PTNLD9-TUMOR_peak_16597 chr14 102198129 102198266 + 12.24732 NA non-coding (NR_026774, exon 3 of 4) non-coding (NR_026774, exon 3 of 4) 1423 NR_026774 145200 Hs.150840 NR_026774 ENSG00000258512 LINC00239 C14orf72|NCRNA00239 long intergenic non-protein coding RNA 239 ncRNA 13-PTNLD9-TUMOR_peak_14992 chr13 99223261 99223621 + 12.24732 NA intron (NM_001286649, intron 1 of 9) intron (NM_001286649, intron 1 of 9) 5964 NM_001032296 8428 Hs.508514 NM_003576 HPRD:10385 STK24 HEL-S-95|MST3|MST3B|STE20|STK3 serine/threonine kinase 24 protein-coding 13-PTNLD9-TUMOR_peak_56317 chrX 106898168 106898374 + 12.24732 NA Intergenic Intergenic 26617 NM_002764 5631 Hs.56 NM_002764 HPRD:02413 PRPS1 ARTS|CMTX5|DFN2|DFNX1|PPRibP|PRS-I|PRSI phosphoribosyl pyrophosphate synthetase 1 protein-coding 13-PTNLD9-TUMOR_peak_4646 chr1 181448353 181448514 + 12.24732 NA Intergenic Intergenic -4253 NM_001205293 777 Hs.437444 NM_000721 HPRD:03006 CACNA1E BII|CACH6|CACNL1A6|Cav2.3 calcium channel, voltage-dependent, R type, alpha 1E subunit protein-coding 13-PTNLD9-TUMOR_peak_3381 chr1 147072583 147072799 + 12.24415 NA intron (NM_004326, intron 1 of 9) intron (NM_004326, intron 1 of 9) 59420 NM_004326 607 Hs.415209 NM_004326 HPRD:04000 BCL9 LGS B-cell CLL/lymphoma 9 protein-coding 13-PTNLD9-TUMOR_peak_50667 chr8 38795143 38795445 + 12.24086 NA intron (NM_021623, intron 3 of 12) intron (NM_021623, intron 3 of 12) -36374 NM_153692 203100 Hs.661014 NM_153692 HPRD:08818 HTRA4 - HtrA serine peptidase 4 protein-coding 13-PTNLD9-TUMOR_peak_19886 chr16 81555039 81555173 + 12.24020 NA intron (NM_030629, intron 1 of 20) intron (NM_030629, intron 1 of 20) -12401 NR_107008 102465840 NR_107008 MIR7854 hsa-mir-7854 microRNA 7854 ncRNA 13-PTNLD9-TUMOR_peak_11604 chr11 128584873 128585157 + 12.24020 NA intron (NM_001271010, intron 1 of 9) MIRb|SINE|MIR -19097 NR_038908 100507392 Hs.657715 NR_038908 ENSG00000254703 SENCR FLI1-AS1|lncRNA9 smooth muscle and endothelial cell enriched migration/differentiation-associated long non-coding RNA ncRNA 13-PTNLD9-TUMOR_peak_47221 chr7 34214960 34215166 + 12.24020 NA Intergenic L1PA2|LINE|L1 270540 NM_133468 168667 Hs.660998 NM_133468 HPRD:16368 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 13-PTNLD9-TUMOR_peak_42054 chr5 132165690 132165901 + 12.24020 NA intron (NM_001172700, intron 1 of 9) CpG 795 NM_001172700 134549 Hs.519574 NM_133456 HPRD:10655 SHROOM1 APXL2 shroom family member 1 protein-coding 13-PTNLD9-TUMOR_peak_40121 chr5 42416 42533 + 12.24020 NA Intergenic Intergenic -97899 NM_052909 153478 Hs.535800 NM_052909 PLEKHG4B - pleckstrin homology domain containing, family G (with RhoGef domain) member 4B protein-coding 13-PTNLD9-TUMOR_peak_44843 chr6 36992524 36992689 + 12.23887 NA intron (NM_173558, intron 13 of 15) intron (NM_173558, intron 13 of 15) 19183 NM_173558 221472 Hs.509664 NM_173558 HPRD:05478 FGD2 ZFYVE4 FYVE, RhoGEF and PH domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_9978 chr11 60920641 60921019 + 12.23887 NA intron (NM_017966, intron 1 of 4) THE1D|LTR|ERVL-MaLR 8086 NM_017966 55048 Hs.523715 NM_017966 HPRD:15652 VPS37C - vacuolar protein sorting 37 homolog C (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_14185 chr12 123921088 123921402 + 12.23887 NA promoter-TSS (NM_145058) promoter-TSS (NM_145058) 19 NM_145058 196383 Hs.488173 NM_145058 HPRD:10084 RILPL2 RLP2 Rab interacting lysosomal protein-like 2 protein-coding 13-PTNLD9-TUMOR_peak_11032 chr11 100647014 100647484 + 12.23887 NA intron (NM_152432, intron 2 of 23) intron (NM_152432, intron 2 of 23) 88842 NM_152432 143872 Hs.741465 NM_152432 ENSG00000165895 ARHGAP42 GRAF3 Rho GTPase activating protein 42 protein-coding 13-PTNLD9-TUMOR_peak_5678 chr1 227915831 227916073 + 12.23887 NA promoter-TSS (NR_024486) promoter-TSS (NR_024486) -288 NR_024485 100130093 Hs.745334 NR_024485 ENSG00000143740 LOC100130093 - uncharacterized LOC100130093 ncRNA 13-PTNLD9-TUMOR_peak_2796 chr1 110518406 110518692 + 12.23887 NA Intergenic Intergenic -8838 NM_006621 10768 Hs.743973 NM_006621 HPRD:07613 AHCYL1 DCAL|IRBIT|PPP1R78|PRO0233|XPVKONA adenosylhomocysteinase-like 1 protein-coding 13-PTNLD9-TUMOR_peak_47895 chr7 73242603 73242747 + 12.23552 NA Intergenic MIRc|SINE|MIR -2518 NM_001305 1364 Hs.647036 NM_001305 HPRD:04218 CLDN4 CPE-R|CPER|CPETR|CPETR1|WBSCR8|hCPE-R claudin 4 protein-coding 13-PTNLD9-TUMOR_peak_24355 chr19 17974622 17974864 + 12.23109 NA TTS (NM_000980) TTS (NM_000980) 1346 NR_000012 26780 Hs.684118 NR_000012 SNORA68 RNU68|U68 small nucleolar RNA, H/ACA box 68 snoRNA 13-PTNLD9-TUMOR_peak_2573 chr1 95320354 95320808 + 12.22890 NA intron (NM_001301079, intron 8 of 13) intron (NM_001301079, intron 8 of 13) 34481 NM_152369 126969 Hs.483423 NM_152369 HPRD:14637 SLC44A3 CTL3 solute carrier family 44, member 3 protein-coding 13-PTNLD9-TUMOR_peak_21469 chr17 48610005 48610121 + 12.22890 NA promoter-TSS (NM_017957) promoter-TSS (NM_017957) 15 NM_017957 55040 Hs.670090 NM_017957 HPRD:06272 EPN3 - epsin 3 protein-coding 13-PTNLD9-TUMOR_peak_4576 chr1 179264133 179264256 + 12.21815 NA intron (NR_045530, intron 1 of 13) intron (NR_045530, intron 1 of 13) 1345 NR_045530 6646 Hs.445588 NM_003101 HPRD:00033 SOAT1 ACACT|ACAT|ACAT-1|ACAT1|SOAT|STAT sterol O-acyltransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_22346 chr17 80479981 80480297 + 12.21815 NA intron (NM_004514, intron 1 of 8) AluJo|SINE|Alu 2545 NM_004514 3607 Hs.591140 NM_004514 HPRD:00982 FOXK2 ILF|ILF-1|ILF1 forkhead box K2 protein-coding 13-PTNLD9-TUMOR_peak_46563 chr6 168962519 168963101 + 12.21328 NA intron (NM_022138, intron 7 of 12) intron (NM_022138, intron 7 of 12) 120979 NM_001166412 64094 Hs.487200 NM_022138 HPRD:06244 SMOC2 DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1 SPARC related modular calcium binding 2 protein-coding 13-PTNLD9-TUMOR_peak_48317 chr7 92462319 92462515 + 12.21328 NA exon (NM_001145306, exon 2 of 8) exon (NM_001145306, exon 2 of 8) 814 NM_001259 1021 Hs.119882 NM_001259 HPRD:04533 CDK6 PLSTIRE cyclin-dependent kinase 6 protein-coding 13-PTNLD9-TUMOR_peak_47884 chr7 73149178 73149393 + 12.21221 NA promoter-TSS (NR_026690) promoter-TSS (NR_026690) -114 NR_026690 171022 Hs.650513 NR_026690 ENSG00000225969 ABHD11-AS1 LINC00035|NCRNA00035|WBSCR26 ABHD11 antisense RNA 1 (tail to tail) ncRNA 13-PTNLD9-TUMOR_peak_31373 chr20 48209619 48209876 + 12.21221 NA Intergenic Intergenic -25040 NM_000961 5740 Hs.302085 NM_000961 HPRD:09046 PTGIS CYP8|CYP8A1|PGIS|PTGI prostaglandin I2 (prostacyclin) synthase protein-coding 13-PTNLD9-TUMOR_peak_54569 chr9 118028492 118028726 + 12.20986 NA intron (NM_017418, intron 2 of 7) L2c|LINE|L2 124512 NM_017418 50514 Hs.148841 NM_017418 HPRD:16068 DEC1 CTS9 deleted in esophageal cancer 1 protein-coding 13-PTNLD9-TUMOR_peak_25979 chr2 3698637 3698828 + 12.20973 NA Intergenic CpG -7054 NM_018436 55821 Hs.97899 NM_018436 HPRD:10642 ALLC ALC allantoicase protein-coding 13-PTNLD9-TUMOR_peak_26874 chr2 47856880 47857232 + 12.20973 NA Intergenic Intergenic -59586 NM_022055 56660 Hs.591586 NM_022055 KCNK12 K2p12.1|THIK-2|THIK2 potassium channel, subfamily K, member 12 protein-coding 13-PTNLD9-TUMOR_peak_49221 chr7 134976665 134977005 + 12.20973 NA Intergenic MIRb|SINE|MIR 60104 NM_182489 346673 Hs.592279 NM_182489 HPRD:18123 STRA8 - stimulated by retinoic acid 8 protein-coding 13-PTNLD9-TUMOR_peak_40582 chr5 34564084 34564289 + 12.20973 NA Intergenic Intergenic -92247 NM_015577 26064 Hs.431400 NM_015577 HPRD:09416 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 13-PTNLD9-TUMOR_peak_55419 chrUn_gl000227 114982 115144 + 12.20973 NA Intergenic Intergenic -40818 NR_109817 441123 NR_109817 ENSG00000170590 LINC00266-3 C6orf88|NCRNA00266-3|NCRNA00266C|dJ24O22.2 long intergenic non-protein coding RNA 266-3 ncRNA 13-PTNLD9-TUMOR_peak_54122 chr9 99416772 99416919 + 12.20973 NA intron (NM_153698, intron 2 of 5) intron (NM_153698, intron 2 of 5) 754 NM_153698 195827 Hs.44640 NM_153698 AAED1 C9orf21 AhpC/TSA antioxidant enzyme domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_27837 chr2 101417911 101418171 + 12.20973 NA Intergenic Intergenic -18572 NM_002518 4862 Hs.156832 NM_002518 HPRD:09137 NPAS2 MOP4|PASD4|bHLHe9 neuronal PAS domain protein 2 protein-coding 13-PTNLD9-TUMOR_peak_29595 chr2 204548698 204548988 + 12.20973 NA Intergenic Intergenic -22355 NM_006139 940 Hs.443123 NM_006139 HPRD:01727 CD28 Tp44 CD28 molecule protein-coding 13-PTNLD9-TUMOR_peak_32460 chr21 44445729 44446302 + 12.20973 NA intron (NM_001286258, intron 8 of 9) intron (NM_001286258, intron 8 of 9) 50025 NM_000071 875 Hs.533013 NM_000071 HPRD:01994 CBS HIP4 cystathionine-beta-synthase protein-coding 13-PTNLD9-TUMOR_peak_22534 chr18 8948495 8948976 + 12.20973 NA Intergenic LTR67B|LTR|ERVL -153893 NM_021074 4729 Hs.464572 NM_021074 HPRD:02757 NDUFV2 CI-24k NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa protein-coding 13-PTNLD9-TUMOR_peak_38917 chr4 96226098 96226477 + 12.20973 NA intron (NM_003728, intron 2 of 15) intron (NM_003728, intron 2 of 15) 213645 NM_001256794 658 Hs.598475 NM_001203 HPRD:04457 BMPR1B ALK-6|ALK6|CDw293 bone morphogenetic protein receptor, type IB protein-coding 13-PTNLD9-TUMOR_peak_13939 chr12 116827806 116828036 + 12.20973 NA Intergenic Intergenic 38202 NR_039683 100616309 NR_039683 miRBase:MI0016824 MIR4472-2 - microRNA 4472-2 ncRNA 13-PTNLD9-TUMOR_peak_46105 chr6 135819505 135819648 + 12.20973 NA promoter-TSS (NM_001134830) promoter-TSS (NM_001134830) 637 NR_026805 100131814 Hs.734007 NR_026805 ENSG00000231028 LINC00271 C6orf217|NCRNA00271 long intergenic non-protein coding RNA 271 ncRNA 13-PTNLD9-TUMOR_peak_42917 chr5 167773511 167773715 + 12.19995 NA intron (NM_015238, intron 1 of 22) intron (NM_015238, intron 1 of 22) 54548 NM_001161662 23286 Hs.484047 NM_015238 HPRD:10033 WWC1 HBEBP3|HBEBP36|KIBRA|MEMRYQTL|PPP1R168 WW and C2 domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_46774 chr7 5128212 5128414 + 12.19995 NA Intergenic Intergenic 16622 NR_015343 389458 Hs.733005 NM_203393 RBAKDN - RBAK downstream neighbor (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_44959 chr6 40995842 40996205 + 12.19995 NA 3' UTR (NM_173561, exon 9 of 9) 3' UTR (NM_173561, exon 9 of 9) -5004 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 13-PTNLD9-TUMOR_peak_42203 chr5 136834967 136835127 + 12.19995 NA promoter-TSS (NM_004598) promoter-TSS (NM_004598) -29 NM_004598 6695 Hs.596136 NM_004598 HPRD:11887 SPOCK1 SPOCK|TESTICAN|TIC1 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1 protein-coding 13-PTNLD9-TUMOR_peak_50673 chr8 39347149 39347334 + 12.19995 NA intron (NR_073423, intron 12 of 21) MLT1F2|LTR|ERVL-MaLR 33267 NR_024106 1587 Hs.98848 NR_001569 ENSG00000197475 ADAM3A ADAM3|CYRN1|tMDCI ADAM metallopeptidase domain 3A (pseudogene) pseudo 13-PTNLD9-TUMOR_peak_42880 chr5 161958087 161958229 + 12.19995 NA Intergenic L1HS|LINE|L1 463510 NM_198904 2566 Hs.7195 NM_000816 HPRD:00663 GABRG2 CAE2|ECA2|GEFSP3 gamma-aminobutyric acid (GABA) A receptor, gamma 2 protein-coding 13-PTNLD9-TUMOR_peak_493 chr1 15656642 15656867 + 12.19995 NA intron (NM_052929, intron 14 of 30) L1MC4a|LINE|L1 -79637 NM_024329 79180 Hs.465374 NM_024329 HPRD:13266 EFHD2 SWS1 EF-hand domain family, member D2 protein-coding 13-PTNLD9-TUMOR_peak_19721 chr16 71460606 71460878 + 12.19995 NA Intergenic Intergenic 35375 NM_145911 7571 Hs.656643 NM_145911 HPRD:01915 ZNF23 KOX16|ZNF359|ZNF612|Zfp612 zinc finger protein 23 protein-coding 13-PTNLD9-TUMOR_peak_26046 chr2 9450639 9450827 + 12.19995 NA intron (NM_003887, intron 3 of 27) intron (NM_003887, intron 3 of 27) 103839 NM_003887 8853 Hs.555902 NM_003887 HPRD:04820 ASAP2 AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 protein-coding 13-PTNLD9-TUMOR_peak_21286 chr17 44889723 44889864 + 12.19995 NA intron (NM_030753, intron 1 of 4) intron (NM_030753, intron 1 of 4) 6333 NM_030753 7473 Hs.445884 NM_030753 HPRD:01318 WNT3 INT4 wingless-type MMTV integration site family, member 3 protein-coding 13-PTNLD9-TUMOR_peak_40195 chr5 1568610 1568911 + 12.19773 NA Intergenic L1MC|LINE|L1 25886 NR_003263 728609 Hs.379186 NR_003263 SDHAP3 SDHACL|SDHAL succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 3 pseudo 13-PTNLD9-TUMOR_peak_51115 chr8 70269071 70269204 + 12.19773 NA Intergenic L1PA3|LINE|L1 91342 NR_110433 100505739 Hs.127115 NR_110433 LOC100505739 - uncharacterized LOC100505739 ncRNA 13-PTNLD9-TUMOR_peak_31454 chr20 49287141 49287291 + 12.19773 NA intron (NM_001290268, intron 1 of 21) intron (NM_001290268, intron 1 of 21) 20851 NR_110890 140876 Hs.372578 NM_080829 HPRD:12757 FAM65C C20orf175|C20orf176|dJ530I15.2|dJ530I15.3 family with sequence similarity 65, member C protein-coding 13-PTNLD9-TUMOR_peak_43157 chr5 175842852 175843008 + 12.19773 NA intron (NM_007097, intron 1 of 5) intron (NM_007097, intron 1 of 5) 640 NR_045724 1212 Hs.484241 NM_001834 HPRD:00352 CLTB LCB clathrin, light chain B protein-coding 13-PTNLD9-TUMOR_peak_30992 chr20 37088956 37089196 + 12.19773 NA Intergenic MamGypLTR1a|LTR|Gypsy 11064 NR_002986 677837 Hs.16936 NR_002986 ENSG00000199266 SNORA60 ACA60 small nucleolar RNA, H/ACA box 60 snoRNA 13-PTNLD9-TUMOR_peak_34496 chr3 48475305 48475465 + 12.19773 NA 5' UTR (NM_001256965, exon 3 of 4) 5' UTR (NM_001256965, exon 3 of 4) -3925 NM_001130082 5364 Hs.476209 NM_002673 HPRD:03032 PLXNB1 PLEXIN-B1|PLXN5|SEP plexin B1 protein-coding 13-PTNLD9-TUMOR_peak_1296 chr1 40605917 40606384 + 12.19773 NA Intergenic MLT1D|LTR|ERVL-MaLR -20891 NM_012421 6018 Hs.205627 NM_012421 HPRD:01614 RLF ZN-15L|ZNF292L rearranged L-myc fusion protein-coding 13-PTNLD9-TUMOR_peak_11002 chr11 96144190 96144408 + 12.19598 NA Intergenic L1PA2|LINE|L1 21141 NM_003772 8690 Hs.105940 NM_003772 HPRD:04443 JRKL HHMJG JRK-like protein-coding 13-PTNLD9-TUMOR_peak_3923 chr1 156232425 156232581 + 12.19598 NA intron (NM_015327, intron 13 of 21) intron (NM_015327, intron 13 of 21) -14595 NM_001272113 79957 Hs.235873 NM_024897 HPRD:17820 PAQR6 - progestin and adipoQ receptor family member VI protein-coding 13-PTNLD9-TUMOR_peak_36250 chr3 143162735 143162862 + 12.19598 NA intron (NM_173653, intron 12 of 15) intron (NM_173653, intron 12 of 15) 101710 NR_048544 100885796 Hs.581618 NR_048544 ENSG00000240012 SLC9A9-AS1 - SLC9A9 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_45962 chr6 117488921 117489373 + 12.19598 NA Intergenic Intergenic -97574 NM_182645 245806 Hs.99324 NM_153453 HPRD:18282 VGLL2 VGL2|VITO1 vestigial-like family member 2 protein-coding 13-PTNLD9-TUMOR_peak_39712 chr4 155473385 155473492 + 12.19598 NA Intergenic Intergenic -1853 NM_002669 5356 Hs.249996 NM_002669 HPRD:16181 PLRG1 Cwc1|PRL1|PRP46|PRPF46|TANGO4 pleiotropic regulator 1 protein-coding 13-PTNLD9-TUMOR_peak_18472 chr16 10130801 10131071 + 12.19598 NA intron (NM_000833, intron 3 of 13) intron (NM_000833, intron 3 of 13) 144988 NM_001134408 2903 Hs.411472 NM_000833 HPRD:00698 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate receptor, ionotropic, N-methyl D-aspartate 2A protein-coding 13-PTNLD9-TUMOR_peak_54303 chr9 107826769 107827221 + 12.19598 NA Intergenic Intergenic -136468 NM_005502 19 Hs.659274 NM_005502 HPRD:02501 ABCA1 ABC-1|ABC1|CERP|HDLDT1|TGD ATP-binding cassette, sub-family A (ABC1), member 1 protein-coding 13-PTNLD9-TUMOR_peak_49161 chr7 132335389 132335548 + 12.19598 NA intron (NR_046323, intron 1 of 4) intron (NR_046323, intron 1 of 4) 1915 NR_046323 286023 Hs.671875 NM_173682 HPRD:08276 FLJ40288 - uncharacterized FLJ40288 ncRNA 13-PTNLD9-TUMOR_peak_2428 chr1 90372195 90372418 + 12.19598 NA intron (NM_001134479, intron 2 of 2) intron (NM_001134479, intron 2 of 2) 84826 NM_018103 55144 Hs.482087 NM_018103 HPRD:11287 LRRC8D LRRC5 leucine rich repeat containing 8 family, member D protein-coding 13-PTNLD9-TUMOR_peak_48745 chr7 105857014 105857189 + 12.19598 NA Intergenic MLT1J|LTR|ERVL-MaLR 68537 NM_005746 10135 Hs.489615 NM_005746 HPRD:09938 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 13-PTNLD9-TUMOR_peak_22843 chr18 25502113 25502321 + 12.19598 NA Intergenic MIR|SINE|MIR 255228 NM_001792 1000 Hs.464829 NM_001792 HPRD:00226 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2, type 1, N-cadherin (neuronal) protein-coding 13-PTNLD9-TUMOR_peak_11379 chr11 118798742 118798991 + 12.19431 NA Intergenic Intergenic -17253 NM_182557 283149 Hs.414740 NM_182557 BCL9L BCL9-2|DLNB11 B-cell CLL/lymphoma 9-like protein-coding 13-PTNLD9-TUMOR_peak_49534 chr7 144539721 144539970 + 12.19431 NA Intergenic MER92C|LTR|ERV1 -6699 NM_001042482 27010 Hs.660232 NM_022445 HPRD:06967 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 13-PTNLD9-TUMOR_peak_46546 chr6 168256637 168256813 + 12.19413 NA intron (NM_001291964, intron 1 of 32) MER44B|DNA|TcMar-Tigger 28410 NM_001291964 4301 Hs.614974 NM_005936 HPRD:01164 MLLT4 AF6 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4 protein-coding 13-PTNLD9-TUMOR_peak_11823 chr12 2629366 2629576 + 12.19413 NA intron (NM_001129832, intron 9 of 47) intron (NM_001129832, intron 9 of 47) 151915 NR_046579 100874235 Hs.667644 NR_046579 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_34920 chr3 69608167 69608519 + 12.19413 NA Intergenic Intergenic -172888 NM_015123 23150 Hs.371681 NM_015123 ENSG00000114541 FRMD4B 6030440G05Rik|GRSP1 FERM domain containing 4B protein-coding 13-PTNLD9-TUMOR_peak_55650 chrX 23822058 23822476 + 12.19413 NA Intergenic MER34|LTR|ERV1 20992 NR_027783 6303 Hs.28491 NM_002970 HPRD:02431 SAT1 DC21|KFSD|KFSDX|SAT|SSAT|SSAT-1 spermidine/spermine N1-acetyltransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_16596 chr14 102197560 102197871 + 12.19413 NA non-coding (NR_026774, exon 2 of 4) non-coding (NR_026774, exon 2 of 4) 941 NR_026774 145200 Hs.150840 NR_026774 ENSG00000258512 LINC00239 C14orf72|NCRNA00239 long intergenic non-protein coding RNA 239 ncRNA 13-PTNLD9-TUMOR_peak_11824 chr12 2629659 2629815 + 12.19413 NA intron (NM_001129832, intron 9 of 47) intron (NM_001129832, intron 9 of 47) 151649 NR_046579 100874235 Hs.667644 NR_046579 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_28671 chr2 148393284 148393425 + 12.19413 NA Intergenic Intergenic -208732 NM_001278580 92 Hs.470174 NM_001616 HPRD:00025 ACVR2A ACTRII|ACVR2 activin A receptor, type IIA protein-coding 13-PTNLD9-TUMOR_peak_26170 chr2 12842961 12843151 + 12.19413 NA Intergenic Intergenic -13942 NR_027303 28951 Hs.467751 NM_021643 HPRD:18224 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 13-PTNLD9-TUMOR_peak_34742 chr3 57102471 57102865 + 12.19413 NA intron (NM_181727, intron 1 of 1) intron (NM_181727, intron 1 of 1) 8199 NM_181727 353324 Hs.129794 NM_181727 HPRD:15426 SPATA12 SRG5 spermatogenesis associated 12 protein-coding 13-PTNLD9-TUMOR_peak_11996 chr12 6745132 6745583 + 12.18655 NA promoter-TSS (NM_020400) promoter-TSS (NM_020400) -60 NM_020400 57121 Hs.155538 NM_020400 HPRD:09495 LPAR5 GPR92|GPR93|KPG_010|LPA5 lysophosphatidic acid receptor 5 protein-coding 13-PTNLD9-TUMOR_peak_27550 chr2 88927588 88927941 + 12.18618 NA promoter-TSS (NM_004836) promoter-TSS (NM_004836) -670 NM_004836 9451 Hs.591589 NM_004836 HPRD:04942 EIF2AK3 PEK|PERK|WRS eukaryotic translation initiation factor 2-alpha kinase 3 protein-coding 13-PTNLD9-TUMOR_peak_24074 chr19 12885837 12886002 + 12.18432 NA intron (NM_013312, intron 1 of 22) CpG 515 NM_001100176 29911 Hs.30792 NM_013312 HPRD:09698 HOOK2 HK2 hook microtubule-tethering protein 2 protein-coding 13-PTNLD9-TUMOR_peak_16732 chr15 20409743 20409995 + 12.18432 NA Intergenic Intergenic -78128 NR_038836 646096 Hs.448789 NR_038836 CHEK2P2 - checkpoint kinase 2 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_4628 chr1 181082237 181082401 + 12.18398 NA Intergenic Intergenic 24681 NM_016545 51278 Hs.15725 NM_016545 HPRD:06210 IER5 SBBI48 immediate early response 5 protein-coding 13-PTNLD9-TUMOR_peak_54426 chr9 113017773 113017969 + 12.18398 NA intron (NM_001244938, intron 1 of 3) CpG 1049 NM_003329 7295 Hs.435136 NM_003329 HPRD:01761 TXN TRDX|TRX|TRX1 thioredoxin protein-coding 13-PTNLD9-TUMOR_peak_42603 chr5 149295314 149295497 + 12.17290 NA intron (NM_000440, intron 5 of 21) MER65C|LTR|ERV1 17135 NR_110534 644762 Hs.730366 NR_110534 LOC644762 - mitochondrial fission factor pseudogene pseudo 13-PTNLD9-TUMOR_peak_11866 chr12 4120848 4121048 + 12.17290 NA Intergenic Intergenic -138334 NM_001286521 57097 Hs.657268 NM_020367 HPRD:15101 PARP11 ARTD11|C12orf6|MIB006 poly (ADP-ribose) polymerase family, member 11 protein-coding 13-PTNLD9-TUMOR_peak_1693 chr1 48192054 48192178 + 12.17290 NA Intergenic Intergenic 270446 NM_001194986 388630 Hs.61504 NM_001194986 ENSG00000269113 TRABD2B TIKI2 TraB domain containing 2B protein-coding 13-PTNLD9-TUMOR_peak_3971 chr1 156720078 156720341 + 12.16496 NA intron (NM_001126050, intron 1 of 5) intron (NM_001126050, intron 1 of 5) 1334 NM_004494 3068 Hs.743948 NM_004494 HPRD:02079 HDGF HMG1L2 hepatoma-derived growth factor protein-coding 13-PTNLD9-TUMOR_peak_53002 chr9 32572388 32572498 + 12.16115 NA intron (NM_182739, intron 1 of 2) intron (NM_182739, intron 1 of 2) 739 NM_001199987 4712 Hs.493668 NM_002493 HPRD:04504 NDUFB6 B17|CI NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6, 17kDa protein-coding 13-PTNLD9-TUMOR_peak_33437 chr22 46330595 46330859 + 12.16115 NA intron (NM_058238, intron 2 of 3) intron (NM_058238, intron 2 of 3) 42281 NM_058238 7477 Hs.512714 NM_058238 HPRD:03573 WNT7B - wingless-type MMTV integration site family, member 7B protein-coding 13-PTNLD9-TUMOR_peak_31334 chr20 47450503 47450681 + 12.16115 NA Intergenic AluY|SINE|Alu -6172 NM_020820 57580 Hs.153310 NM_020820 HPRD:06066 PREX1 P-REX1 phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1 protein-coding 13-PTNLD9-TUMOR_peak_16521 chr14 96968384 96968844 + 12.16115 NA promoter-TSS (NM_032632) promoter-TSS (NM_032632) 49 NR_122121 730202 Hs.647565 NR_122121 LOC730202 - uncharacterized LOC730202 ncRNA 13-PTNLD9-TUMOR_peak_39731 chr4 157852495 157852712 + 12.16115 NA intron (NR_036641, intron 1 of 6) intron (NR_036641, intron 1 of 6) 39943 NM_016205 56034 Hs.570855 NM_016205 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 13-PTNLD9-TUMOR_peak_49670 chr7 151201078 151201227 + 12.16115 NA intron (NM_005614, intron 1 of 7) intron (NM_005614, intron 1 of 7) 15858 NM_005614 6009 Hs.283521 NM_005614 HPRD:03188 RHEB RHEB2 Ras homolog enriched in brain protein-coding 13-PTNLD9-TUMOR_peak_1241 chr1 39571009 39571113 + 12.15951 NA intron (NM_012090, intron 1 of 92) CpG 21222 NM_012090 23499 Hs.472475 NM_012090 HPRD:09750 MACF1 ABP620|ACF7|MACF|OFC4 microtubule-actin crosslinking factor 1 protein-coding 13-PTNLD9-TUMOR_peak_7859 chr10 81107046 81107362 + 12.15771 NA promoter-TSS (NM_005729) promoter-TSS (NM_005729) -16 NM_005729 10105 Hs.381072 NM_005729 HPRD:06839 PPIF CYP3|CyP-M|Cyp-D|CypD peptidylprolyl isomerase F protein-coding 13-PTNLD9-TUMOR_peak_47722 chr7 64838936 64839220 + 12.15771 NA intron (NM_001287534, intron 1 of 1) CpG 366 NM_007139 168374 Hs.9521 NM_007139 HPRD:04919 ZNF92 HEL-203|HPF12|HTF12|TF12 zinc finger protein 92 protein-coding 13-PTNLD9-TUMOR_peak_53025 chr9 33231414 33231582 + 12.15582 NA Intergenic LTR16C|LTR|ERVL -8698 NM_014471 27290 Hs.555934 NM_014471 HPRD:11598 SPINK4 HEL136|PEC-60|PEC60 serine peptidase inhibitor, Kazal type 4 protein-coding 13-PTNLD9-TUMOR_peak_40862 chr5 53867274 53867633 + 12.15243 NA Intergenic Intergenic 53860 NM_001102575 112574 Hs.432755 NM_052870 HPRD:15407 SNX18 SH3PX2|SH3PXD3B|SNAG1 sorting nexin 18 protein-coding 13-PTNLD9-TUMOR_peak_177 chr1 4710627 4710786 + 12.15243 NA Intergenic Intergenic -4399 NM_001042478 55966 Hs.25924 NM_018836 HPRD:15339 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 13-PTNLD9-TUMOR_peak_26845 chr2 47254013 47254188 + 12.15243 NA intron (NM_001288955, intron 13 of 18) intron (NM_001288955, intron 13 of 18) -85106 NM_001171511 90411 Hs.662152 NM_139279 HPRD:09693 MCFD2 F5F8D|F5F8D2|LMAN1IP|SDNSF multiple coagulation factor deficiency 2 protein-coding 13-PTNLD9-TUMOR_peak_17696 chr15 75996095 75996250 + 12.15243 NA intron (NM_001897, intron 1 of 9) intron (NM_001897, intron 1 of 9) 9017 NM_001897 1464 Hs.513044 NM_001897 HPRD:03105 CSPG4 HMW-MAA|MCSP|MCSPG|MEL-CSPG|MSK16|NG2 chondroitin sulfate proteoglycan 4 protein-coding 13-PTNLD9-TUMOR_peak_16945 chr15 31683965 31684135 + 12.15243 NA Intergenic CpG 64967 NM_015995 51621 Hs.525752 NM_015995 HPRD:05620 KLF13 BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1 Kruppel-like factor 13 protein-coding 13-PTNLD9-TUMOR_peak_47059 chr7 23312821 23312995 + 12.15243 NA intron (NM_001005340, intron 9 of 10) intron (NM_001005340, intron 9 of 10) -26032 NM_138446 115416 Hs.87385 NM_138446 MALSU1 C7orf30|mtRsfA mitochondrial assembly of ribosomal large subunit 1 protein-coding 13-PTNLD9-TUMOR_peak_6011 chr1 236695083 236695306 + 12.15243 NA intron (NM_201543, intron 3 of 10) MER68|LTR|ERVL -7386 NR_034040 100287902 Hs.677376 NR_034040 ENSG00000223776 LGALS8-AS1 - LGALS8 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_36190 chr3 141085155 141085704 + 12.14329 NA intron (NM_001080412, intron 1 of 7) intron (NM_001080412, intron 1 of 7) 42374 NM_001080412 253461 Hs.518301 NM_152535 ENSG00000177311 ZBTB38 CIBZ|PPP1R171|ZNF921 zinc finger and BTB domain containing 38 protein-coding 13-PTNLD9-TUMOR_peak_26338 chr2 25565369 25565527 + 12.14061 NA promoter-TSS (NM_022552) promoter-TSS (NM_022552) 11 NM_175629 1788 Hs.515840 NM_022552 HPRD:04141 DNMT3A DNMT3A2|M.HsaIIIA|TBRS DNA (cytosine-5-)-methyltransferase 3 alpha protein-coding 13-PTNLD9-TUMOR_peak_47178 chr7 30886144 30886264 + 12.14061 NA intron (NM_032222, intron 9 of 17) intron (NM_032222, intron 9 of 17) -65211 NM_198098 358 Hs.76152 NM_000385 HPRD:00140 AQP1 AQP-CHIP|CHIP28|CO aquaporin 1 (Colton blood group) protein-coding 13-PTNLD9-TUMOR_peak_53829 chr9 87555367 87555488 + 12.14061 NA intron (NM_001018064, intron 13 of 16) intron (NM_001018064, intron 13 of 16) 270135 NM_001018064 4915 Hs.494312 NM_006180 HPRD:02712 NTRK2 GP145-TrkB|TRKB|trk-B neurotrophic tyrosine kinase, receptor, type 2 protein-coding 13-PTNLD9-TUMOR_peak_23241 chr18 53835776 53835942 + 12.14061 NA Intergenic Intergenic -31092 NR_040025 100505474 Hs.662191 NR_040025 ENSG00000267712 LOC100505474 - uncharacterized LOC100505474 ncRNA 13-PTNLD9-TUMOR_peak_48025 chr7 75738328 75738503 + 12.14061 NA Intergenic MER61A|LTR|ERV1 61078 NM_005918 4191 Hs.520967 NM_005918 HPRD:01099 MDH2 M-MDH|MDH|MGC:3559|MOR1 malate dehydrogenase 2, NAD (mitochondrial) protein-coding 13-PTNLD9-TUMOR_peak_54807 chr9 130318337 130318611 + 12.14061 NA intron (NM_001035534, intron 1 of 13) intron (NM_001035534, intron 1 of 13) 12922 NM_022833 64855 Hs.522401 NM_022833 HPRD:10804 FAM129B C9orf88|MEG-3|MINERVA|OC58|bA356B19.6 family with sequence similarity 129, member B protein-coding 13-PTNLD9-TUMOR_peak_29416 chr2 194212401 194212649 + 12.14061 NA Intergenic MER41A|LTR|ERV1 597954 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1, prostate-specific transcript (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_45713 chr6 90142763 90143004 + 12.14061 NA promoter-TSS (NM_014942) promoter-TSS (NM_014942) -14 NM_014942 22881 Hs.702213 NM_014942 HPRD:09798 ANKRD6 - ankyrin repeat domain 6 protein-coding 13-PTNLD9-TUMOR_peak_50862 chr8 48190813 48191047 + 12.14061 NA intron (NR_104581, intron 1 of 16) AluJb|SINE|Alu 17460 NM_001080394 23514 Hs.381058 NM_001080394 ENSG00000164808 SPIDR KIAA0146 scaffolding protein involved in DNA repair protein-coding 13-PTNLD9-TUMOR_peak_55617 chrX 19964185 19964326 + 12.14061 NA intron (NM_198279, intron 7 of 10) L1PA2|LINE|L1 24127 NM_198279 256643 Hs.28896 NM_198279 HPRD:06620 CXorf23 - chromosome X open reading frame 23 protein-coding 13-PTNLD9-TUMOR_peak_8032 chr10 95048727 95049003 + 12.14061 NA Intergenic Intergenic 193209 NM_133337 26509 Hs.602086 NM_013451 HPRD:06857 MYOF FER1L3 myoferlin protein-coding 13-PTNLD9-TUMOR_peak_27094 chr2 65202417 65202828 + 12.14061 NA Intergenic Intergenic -12957 NM_001193493 6509 Hs.654352 NM_003038 HPRD:02576 SLC1A4 ASCT1|SATT solute carrier family 1 (glutamate/neutral amino acid transporter), member 4 protein-coding 13-PTNLD9-TUMOR_peak_38188 chr4 38190376 38190699 + 12.14061 NA Intergenic MER5B|DNA|hAT-Charlie 68962 NM_001253915 23216 Hs.176503 NM_015173 HPRD:18161 TBC1D1 TBC|TBC1 TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1 protein-coding 13-PTNLD9-TUMOR_peak_34174 chr3 30790869 30791055 + 12.14061 NA intron (NM_207359, intron 14 of 14) intron (NM_207359, intron 14 of 14) 142968 NM_003242 7048 Hs.82028 NM_003242 HPRD:01823 TGFBR2 AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TGFR-2|TGFbeta-RII transforming growth factor, beta receptor II (70/80kDa) protein-coding 13-PTNLD9-TUMOR_peak_47567 chr7 56183810 56183938 + 12.14061 NA exon (NM_001145712, exon 1 of 2) exon (NM_001145712, exon 1 of 2) 216 NM_001145712 389493 Hs.177948 NM_001145712 ENSG00000185290 NUPR1L - nuclear protein, transcriptional regulator, 1-like protein-coding 13-PTNLD9-TUMOR_peak_41281 chr5 73682852 73682999 + 12.14061 NA Intergenic Intergenic 64614 NR_105010 101929082 Hs.434316 NR_105010 ENSG00000249343 LINC01333 - long intergenic non-protein coding RNA 1333 ncRNA 13-PTNLD9-TUMOR_peak_26612 chr2 38134633 38134923 + 12.14061 NA Intergenic Intergenic -17684 NM_001170791 151393 Hs.591566 NM_144713 HPRD:08741 RMDN2 FAM82A|FAM82A1|PRO34163|PYST9371|RMD-2|RMD2|RMD4 regulator of microtubule dynamics 2 protein-coding 13-PTNLD9-TUMOR_peak_30500 chr20 17517705 17517894 + 12.14061 NA intron (NM_001278608, intron 3 of 9) intron (NM_001278608, intron 3 of 9) -5785 NM_001195 631 Hs.129702 NM_001195 HPRD:04494 BFSP1 CP115|CP94|CTRCT33|LIFL-H beaded filament structural protein 1, filensin protein-coding 13-PTNLD9-TUMOR_peak_26876 chr2 47951503 47951949 + 12.14061 NA Intergenic MLT1K|LTR|ERVL-MaLR -58495 NM_001281492 2956 Hs.445052 NM_000179 HPRD:07202 MSH6 GTBP|GTMBP|HNPCC5|HSAP|p160 mutS homolog 6 protein-coding 13-PTNLD9-TUMOR_peak_22607 chr18 11655344 11655471 + 12.14061 NA promoter-TSS (NR_106975) promoter-TSS (NR_106975) -467 NR_106975 102465690 NR_106975 MIR7153 hsa-mir-7153 microRNA 7153 ncRNA 13-PTNLD9-TUMOR_peak_34122 chr3 26147721 26147909 + 12.14061 NA Intergenic MER72B|LTR|ERV1 -232629 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 13-PTNLD9-TUMOR_peak_17655 chr15 74753434 74753749 + 12.14061 NA promoter-TSS (NM_201265) promoter-TSS (NM_201265) -15 NR_038449 440288 Hs.611046 NR_038448 ENSG00000247240 UBL7-AS1 - UBL7 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_40958 chr5 57133540 57133731 + 12.13628 NA Intergenic Intergenic 61354 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LOC101928539 - uncharacterized LOC101928539 ncRNA 13-PTNLD9-TUMOR_peak_10064 chr11 62306798 62307038 + 12.13628 NA intron (NM_024060, intron 1 of 5) intron (NM_024060, intron 1 of 5) 7414 NM_024060 79026 Hs.502756 NM_001620 HPRD:14684 AHNAK AHNAKRS AHNAK nucleoprotein protein-coding 13-PTNLD9-TUMOR_peak_2813 chr1 110748494 110748719 + 12.13628 NA Intergenic Intergenic 4003 NR_046546 100873974 Hs.130515 NR_046546 KCNC4-AS1 - KCNC4 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_32856 chr22 21910426 21910642 + 12.13628 NA intron (NM_001256355, intron 1 of 3) AluJb|SINE|Alu -4784 NM_001128633 150221 Hs.447643 NM_001128633 ENSG00000183246 RIMBP3C RIM-BP3.3|RIMBP3.3 RIMS binding protein 3C protein-coding 13-PTNLD9-TUMOR_peak_23058 chr18 43901213 43901404 + 12.13628 NA Intergenic L1MB4|LINE|L1 -12879 NM_152470 494470 Hs.501114 NM_152470 ENSG00000141622 RNF165 ARKL2|RNF111L2 ring finger protein 165 protein-coding 13-PTNLD9-TUMOR_peak_8763 chr11 844295 844588 + 12.13277 NA promoter-TSS (NM_001025237) promoter-TSS (NM_001025237) -5 NM_001025237 7106 Hs.654836 NM_003271 HPRD:04033 TSPAN4 NAG-2|NAG2|TETRASPAN|TM4SF7|TSPAN-4 tetraspanin 4 protein-coding 13-PTNLD9-TUMOR_peak_32605 chr21 47469389 47469578 + 12.11777 NA Intergenic Intergenic -48550 NM_001849 1292 Hs.420269 NM_001849 HPRD:02110 COL6A2 PP3610 collagen, type VI, alpha 2 protein-coding 13-PTNLD9-TUMOR_peak_36195 chr3 141120817 141121231 + 12.11777 NA intron (NM_001080412, intron 6 of 7) CpG 77969 NM_001080412 253461 Hs.518301 NM_152535 ENSG00000177311 ZBTB38 CIBZ|PPP1R171|ZNF921 zinc finger and BTB domain containing 38 protein-coding 13-PTNLD9-TUMOR_peak_42994 chr5 171106374 171106658 + 12.11777 NA Intergenic Intergenic -106360 NM_001289970 644994 Hs.591740 NM_001289970 SMIM23 C5orf50 small integral membrane protein 23 protein-coding 13-PTNLD9-TUMOR_peak_23632 chr19 1605835 1606066 + 12.11777 NA promoter-TSS (NM_006830) promoter-TSS (NM_006830) -467 NM_006830 10975 Hs.8372 NM_006830 HPRD:15628 UQCR11 0710008D09Rik|QCR10|UQCR ubiquinol-cytochrome c reductase, complex III subunit XI protein-coding 13-PTNLD9-TUMOR_peak_3091 chr1 120602184 120602388 + 12.11534 NA intron (NM_024408, intron 1 of 33) intron (NM_024408, intron 1 of 33) 10031 NM_001200001 4853 Hs.487360 NM_024408 HPRD:02606 NOTCH2 AGS2|HJCYS|hN2 notch 2 protein-coding 13-PTNLD9-TUMOR_peak_23932 chr19 10457313 10457491 + 12.11375 NA Intergenic L1MC1|LINE|L1 -7057 NM_002162 3385 Hs.654563 NM_002162 HPRD:00889 ICAM3 CD50|CDW50|ICAM-R intercellular adhesion molecule 3 protein-coding 13-PTNLD9-TUMOR_peak_47329 chr7 43768934 43769373 + 12.11375 NA promoter-TSS (NM_018224) promoter-TSS (NM_018224) -13 NM_018224 55744 Hs.654779 NM_018224 HPRD:07700 COA1 C7orf44|MITRAC15 cytochrome c oxidase assembly factor 1 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_21062 chr17 39929556 39929735 + 12.11375 NA intron (NM_002230, intron 1 of 13) intron (NM_002230, intron 1 of 13) 13319 NM_002230 3728 Hs.514174 NM_002230 HPRD:01414 JUP ARVD12|CTNNG|DP3|DPIII|PDGB|PKGB junction plakoglobin protein-coding 13-PTNLD9-TUMOR_peak_38441 chr4 56212692 56212922 + 12.11375 NA intron (NM_024592, intron 1 of 4) CpG 419 NM_024592 79644 Hs.39311 NM_024592 HPRD:07825 SRD5A3 CDG1P|CDG1Q|KRIZI|SRD5A2L|SRD5A2L1 steroid 5 alpha-reductase 3 protein-coding 13-PTNLD9-TUMOR_peak_3790 chr1 154492876 154493021 + 12.11375 NA intron (NM_182499, intron 5 of 12) intron (NM_182499, intron 5 of 12) 18253 NM_001098475 126668 Hs.387671 NM_182499 HPRD:13196 TDRD10 - tudor domain containing 10 protein-coding 13-PTNLD9-TUMOR_peak_13381 chr12 76742157 76742423 + 12.11375 NA promoter-TSS (NM_024685) promoter-TSS (NM_024685) -68 NM_024685 79738 Hs.96322 NM_024685 HPRD:08036 BBS10 C12orf58 Bardet-Biedl syndrome 10 protein-coding 13-PTNLD9-TUMOR_peak_42769 chr5 155902922 155903145 + 12.11375 NA intron (NM_001128209, intron 2 of 7) intron (NM_001128209, intron 2 of 7) 149266 NM_000337 6444 Hs.387207 NM_000337 HPRD:03246 SGCD 35DAG|CMD1L|DAGD|SG-delta|SGCDP|SGD sarcoglycan, delta (35kDa dystrophin-associated glycoprotein) protein-coding 13-PTNLD9-TUMOR_peak_5495 chr1 222990959 222991165 + 12.10878 NA intron (NM_032890, intron 1 of 9) intron (NM_032890, intron 1 of 9) 2631 NM_032890 84976 Hs.528817 NM_032890 HPRD:06326 DISP1 DISPA dispatched homolog 1 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_54237 chr9 102972370 102972544 + 12.10878 NA intron (NM_014425, intron 3 of 16) intron (NM_014425, intron 3 of 16) 110955 NR_051962 27130 Hs.558477 NM_014425 HPRD:08356 INVS INV|NPH2|NPHP2 inversin protein-coding 13-PTNLD9-TUMOR_peak_4520 chr1 177896192 177896512 + 12.10878 NA Intergenic Intergenic 42698 NM_033127 89866 Hs.149540 NM_033127 HPRD:11491 SEC16B LZTR2|PGPR-p117|RGPR|SEC16S SEC16 homolog B (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_26832 chr2 47100861 47101032 + 12.10878 NA Intergenic Intergenic 42061 NM_139279 90411 Hs.662152 NM_139279 HPRD:09693 MCFD2 F5F8D|F5F8D2|LMAN1IP|SDNSF multiple coagulation factor deficiency 2 protein-coding 13-PTNLD9-TUMOR_peak_32087 chr21 30603279 30603451 + 12.10878 NA intron (NR_027072, intron 1 of 1) intron (NR_027072, intron 1 of 1) 37550 NR_027072 193629 Hs.720711 NM_138968 ENSG00000215533 LINC00189 C21orf109|NCRNA00189 long intergenic non-protein coding RNA 189 ncRNA 13-PTNLD9-TUMOR_peak_6144 chr1 245425267 245425446 + 12.10613 NA intron (NM_018012, intron 2 of 14) intron (NM_018012, intron 2 of 14) 107069 NM_018012 55083 Hs.368096 NM_018012 ENSG00000162849 KIF26B - kinesin family member 26B protein-coding 13-PTNLD9-TUMOR_peak_4996 chr1 201952373 201952529 + 12.09921 NA intron (NM_020216, intron 1 of 10) CpG 685 NM_020216 6051 Hs.497391 NM_020216 HPRD:04055 RNPEP - arginyl aminopeptidase (aminopeptidase B) protein-coding 13-PTNLD9-TUMOR_peak_10393 chr11 67795558 67795787 + 12.09365 NA 3' UTR (NM_001290059, exon 9 of 9) 3' UTR (NM_001290059, exon 9 of 9) -2412 NM_002496 4728 Hs.90443 NM_002496 HPRD:03683 NDUFS8 CI-23k|CI23KD|TYKY NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q reductase) protein-coding 13-PTNLD9-TUMOR_peak_17824 chr15 83174837 83175062 + 12.09119 NA intron (NR_026811, intron 1 of 7).3 intron (NR_026811, intron 1 of 7).3 8024 NR_102747 727751 Hs.546614 NR_102747 LOC727751 - golgin A2 pseudogene pseudo 13-PTNLD9-TUMOR_peak_45119 chr6 43960681 43960925 + 12.09119 NA Intergenic Intergenic -7534 NM_001171992 221416 Hs.531926 NM_153246 HPRD:14640 C6orf223 - chromosome 6 open reading frame 223 protein-coding 13-PTNLD9-TUMOR_peak_6514 chr10 13344101 13344488 + 12.09119 NA Intergenic CpG -2164 NM_006214 5264 Hs.498732 NM_006214 HPRD:03609 PHYH LN1|LNAP1|PAHX|PHYH1|RD phytanoyl-CoA 2-hydroxylase protein-coding 13-PTNLD9-TUMOR_peak_92 chr1 1568894 1569277 + 12.09119 NA intron (NM_006983, intron 4 of 7) CpG-122 926 NR_002946 8511 Hs.671760 NR_002946 HPRD:04502 MMP23A MIFR|MIFR-1|MMP21 matrix metallopeptidase 23A (pseudogene) pseudo 13-PTNLD9-TUMOR_peak_30975 chr20 36621289 36621491 + 12.09035 NA intron (NM_014657, intron 8 of 8) intron (NM_014657, intron 8 of 8) 40443 NM_014657 9675 Hs.655481 NM_014657 HPRD:13799 TTI1 KIAA0406|smg-10 TELO2 interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_3767 chr1 153974194 153974471 + 12.09035 NA exon (NM_207308, exon 36 of 40) exon (NM_207308, exon 36 of 40) 11093 NM_001030 6232 Hs.546291 NM_001030 HPRD:04744 RPS27 MPS-1|MPS1|S27 ribosomal protein S27 protein-coding 13-PTNLD9-TUMOR_peak_53628 chr9 75083861 75084101 + 12.08766 NA Intergenic Intergenic -52736 NM_138691 117531 Hs.670211 NM_138691 HPRD:05988 TMC1 DFNA36|DFNB11|DFNB7 transmembrane channel-like 1 protein-coding 13-PTNLD9-TUMOR_peak_49989 chr8 6752425 6752722 + 12.08766 NA Intergenic MIR3|SINE|MIR -17044 NM_005218 1672 Hs.32949 NM_005218 HPRD:03634 DEFB1 BD1|DEFB-1|DEFB101|HBD1 defensin, beta 1 protein-coding 13-PTNLD9-TUMOR_peak_19362 chr16 53855983 53856140 + 12.08766 NA intron (NM_001080432, intron 2 of 8) MLT1I|LTR|ERVL-MaLR 118186 NM_001080432 79068 Hs.528833 NM_001080432 FTO ALKBH9 fat mass and obesity associated protein-coding 13-PTNLD9-TUMOR_peak_4240 chr1 165098929 165099086 + 12.08766 NA Intergenic Intergenic 226471 NM_001174069 4009 Hs.667312 NM_177398 HPRD:02623 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1, alpha protein-coding 13-PTNLD9-TUMOR_peak_35008 chr3 75334834 75334962 + 12.08766 NA Intergenic Intergenic 71271 NR_039646 100616394 NR_039646 miRBase:MI0016787 MIR4444-1 MIR4444|hsa-mir-4444-1 microRNA 4444-1 ncRNA 13-PTNLD9-TUMOR_peak_37135 chr3 187983887 187984193 + 12.08766 NA intron (NM_005578, intron 2 of 10) intron (NM_005578, intron 2 of 10) 40847 NM_001167671 4026 Hs.720220 NM_005578 HPRD:02828 LPP - LIM domain containing preferred translocation partner in lipoma protein-coding 13-PTNLD9-TUMOR_peak_22827 chr18 24009620 24009820 + 12.08766 NA intron (NR_110762, intron 3 of 3) intron (NR_110762, intron 3 of 3) 6761 NR_110762 100506787 Hs.734746 NR_110762 LOC100506787 - uncharacterized LOC100506787 ncRNA 13-PTNLD9-TUMOR_peak_56663 chrX 152599572 152599733 + 12.08766 NA promoter-TSS (NM_001080485) promoter-TSS (NM_001080485) 39 NM_001080485 10838 Hs.348963 NM_020636 ENSG00000063587 ZNF275 - zinc finger protein 275 protein-coding 13-PTNLD9-TUMOR_peak_15503 chr14 34206746 34207002 + 12.08766 NA intron (NM_001165893, intron 6 of 10) intron (NM_001165893, intron 6 of 10) 213410 NM_022073 112399 Hs.135507 NM_022073 HPRD:06972 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia-inducible factor 3 protein-coding 13-PTNLD9-TUMOR_peak_42443 chr5 142585039 142585265 + 12.08766 NA intron (NM_015071, intron 20 of 22) intron (NM_015071, intron 20 of 22) 198102 NM_000176 2908 Hs.122926 NM_000176 HPRD:00679 NR3C1 GCCR|GCR|GR|GRL nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) protein-coding 13-PTNLD9-TUMOR_peak_12769 chr12 51512545 51512747 + 12.08766 NA intron (NM_005653, intron 1 of 14) intron (NM_005653, intron 1 of 14) -35192 NM_030809 81566 Hs.524425 NM_030809 HPRD:12608 CSRNP2 C12orf2|C12orf22|FAM130A1|PPP1R72|TAIP-12 cysteine-serine-rich nuclear protein 2 protein-coding 13-PTNLD9-TUMOR_peak_18680 chr16 19295646 19295847 + 12.08766 NA Intergenic Intergenic -1359 NM_001256720 728276 Hs.632180 NM_001256720 CLEC19A - C-type lectin domain family 19, member A protein-coding 13-PTNLD9-TUMOR_peak_10867 chr11 88070848 88070991 + 12.08766 NA promoter-TSS (NM_001114173) promoter-TSS (NM_001114173) 22 NM_001114173 1075 Hs.128065 NM_001814 HPRD:03841 CTSC CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS cathepsin C protein-coding 13-PTNLD9-TUMOR_peak_56622 chrX 150893500 150893686 + 12.08168 NA Intergenic Intergenic 9085 NM_033085 89885 Hs.301960 NM_033085 HPRD:02346 FATE1 CT43|FATE fetal and adult testis expressed 1 protein-coding 13-PTNLD9-TUMOR_peak_28906 chr2 161887193 161887458 + 12.08168 NA Intergenic MLT1K|LTR|ERVL-MaLR -106141 NM_133484 10010 Hs.132257 NM_004180 HPRD:04870 TANK I-TRAF|ITRAF|TRAF2 TRAF family member-associated NFKB activator protein-coding 13-PTNLD9-TUMOR_peak_13486 chr12 93861157 93861598 + 12.08168 NA intron (NM_014050, intron 1 of 5) CpG 111 NM_014050 28977 Hs.199579 NM_014050 HPRD:14761 MRPL42 L31MT|L42MT|MRP-L31|MRP-L42|MRP-S32|MRPL31|MRPS32|PTD007|RPML31|S32MT mitochondrial ribosomal protein L42 protein-coding 13-PTNLD9-TUMOR_peak_53189 chr9 37602917 37603191 + 12.08168 NA Intergenic Intergenic -10418 NM_001134484 401505 Hs.130774 NM_001001790 HPRD:16672 TOMM5 C9orf105|Tom5|bA613M10.3 translocase of outer mitochondrial membrane 5 homolog (yeast) protein-coding 13-PTNLD9-TUMOR_peak_15363 chr14 24578077 24578246 + 12.08168 NA Intergenic Intergenic -5745 NM_001163484 80344 Hs.525251 NM_025230 HPRD:18297 DCAF11 PRO2389|WDR23 DDB1 and CUL4 associated factor 11 protein-coding 13-PTNLD9-TUMOR_peak_47133 chr7 28651575 28651955 + 12.08168 NA intron (NM_182898, intron 5 of 10) intron (NM_182898, intron 5 of 10) -73956 NM_001011666 9586 Hs.437075 NM_004904 HPRD:09896 CREB5 CRE-BPA cAMP responsive element binding protein 5 protein-coding 13-PTNLD9-TUMOR_peak_50269 chr8 22061424 22061566 + 12.08168 NA intron (NR_033403, intron 16 of 19) intron (NR_033403, intron 16 of 19) 28356 NM_001099335 9796 Hs.334688 NM_014759 HPRD:16345 PHYHIP DYRK1AP3|PAHX-AP|PAHXAP1 phytanoyl-CoA 2-hydroxylase interacting protein protein-coding 13-PTNLD9-TUMOR_peak_31244 chr20 45004502 45004668 + 12.08168 NA intron (NM_182764, intron 10 of 20) intron (NM_182764, intron 10 of 20) -11488 NM_173073 51006 Hs.593344 NM_015945 HPRD:15371 SLC35C2 BA394O2.1|C20orf5|CGI-15|OVCOV1 solute carrier family 35 (GDP-fucose transporter), member C2 protein-coding 13-PTNLD9-TUMOR_peak_38603 chr4 76487111 76487334 + 12.08168 NA intron (NM_001206981, intron 2 of 2) intron (NM_001206981, intron 2 of 2) 5964 NR_046429 152816 Hs.24510 NM_178497 HPRD:08040 C4orf26 AI2A4 chromosome 4 open reading frame 26 protein-coding 13-PTNLD9-TUMOR_peak_33029 chr22 27635127 27635304 + 12.08168 NA Intergenic Intergenic 335960 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000223704 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 13-PTNLD9-TUMOR_peak_3780 chr1 154392790 154392970 + 12.07962 NA intron (NM_181359, intron 1 of 8) MIRc|SINE|MIR 15211 NM_181359 3570 Hs.135087 NM_000565 HPRD:01000 IL6R CD126|IL-6R-1|IL-6RA|IL6Q|IL6RA|IL6RQ|gp80 interleukin 6 receptor protein-coding 13-PTNLD9-TUMOR_peak_20094 chr16 88828251 88828564 + 12.07962 NA intron (NM_001142864, intron 1 of 50) intron (NM_001142864, intron 1 of 50) 19232 NR_120387 339059 Hs.449817 NR_120387 HPRD:08282 LOC339059 - uncharacterized LOC339059 ncRNA 13-PTNLD9-TUMOR_peak_24130 chr19 13732318 13732621 + 12.07823 NA Intergenic MER5A1|DNA|hAT-Charlie -115195 NM_023035 773 Hs.501632 NM_000068 HPRD:03004 CACNA1A APCA|BI|CACNL1A4|CAV2.1|EA2|FHM|HPCA|MHP|MHP1|SCA6 calcium channel, voltage-dependent, P/Q type, alpha 1A subunit protein-coding 13-PTNLD9-TUMOR_peak_35023 chr3 75658419 75658606 + 12.07823 NA Intergenic SATR1|Satellite|Satellite -21402 NR_031714 100302212 NR_031714 miRBase:MI0006657 MIR1324 MIRN1324|hsa-mir-1324 microRNA 1324 ncRNA 13-PTNLD9-TUMOR_peak_27451 chr2 85934487 85934592 + 12.07823 NA Intergenic Intergenic 13125 NM_006433 10578 Hs.105806 NM_006433 HPRD:01788 GNLY 519|D2S69E|LAG-2|LAG2|NKG5|TLA519 granulysin protein-coding 13-PTNLD9-TUMOR_peak_37322 chr3 194247869 194248213 + 12.07823 NA Intergenic Intergenic 40172 NR_033929 401106 Hs.407087 NR_033929 LINC00884 - long intergenic non-protein coding RNA 884 ncRNA 13-PTNLD9-TUMOR_peak_26843 chr2 47235912 47236086 + 12.07823 NA intron (NM_001288955, intron 9 of 18) intron (NM_001288955, intron 9 of 18) -67005 NM_001171511 90411 Hs.662152 NM_139279 HPRD:09693 MCFD2 F5F8D|F5F8D2|LMAN1IP|SDNSF multiple coagulation factor deficiency 2 protein-coding 13-PTNLD9-TUMOR_peak_35861 chr3 129344799 129344975 + 12.07146 NA Intergenic AluY|SINE|Alu -19305 NM_015103 23129 Hs.301685 NM_015103 HPRD:05046 PLXND1 PLEXD1 plexin D1 protein-coding 13-PTNLD9-TUMOR_peak_54367 chr9 110947275 110947519 + 12.06605 NA Intergenic Intergenic 670878 NM_006686 10880 Hs.534390 NM_006686 ACTL7B Tact1 actin-like 7B protein-coding 13-PTNLD9-TUMOR_peak_43867 chr6 13725910 13726125 + 12.06605 NA Intergenic Intergenic -14221 NM_005493 10048 Hs.708182 NM_005493 HPRD:04835 RANBP9 BPM-L|BPM90|RANBPM|RanBP7 RAN binding protein 9 protein-coding 13-PTNLD9-TUMOR_peak_10407 chr11 68122061 68122230 + 12.06605 NA intron (NM_001291902, intron 2 of 22) intron (NM_001291902, intron 2 of 22) 42068 NM_002335 4041 Hs.6347 NM_002335 HPRD:04616 LRP5 BMND1|EVR1|EVR4|HBM|LR3|LRP-5|LRP7|OPPG|OPS|OPTA1|VBCH2 low density lipoprotein receptor-related protein 5 protein-coding 13-PTNLD9-TUMOR_peak_27558 chr2 89348255 89348456 + 12.06605 NA Intergenic LTR16C|LTR|ERVL 236471 NR_039635 100616399 NR_039635 miRBase:MI0016776 MIR4436A - microRNA 4436a ncRNA 13-PTNLD9-TUMOR_peak_27254 chr2 72439028 72439141 + 12.06605 NA intron (NM_015189, intron 20 of 21) intron (NM_015189, intron 20 of 21) -64093 NM_019885 56603 Hs.91546 NM_019885 HPRD:05550 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450, family 26, subfamily B, polypeptide 1 protein-coding 13-PTNLD9-TUMOR_peak_4393 chr1 171757986 171758148 + 12.06605 NA intron (NM_001007239, intron 4 of 7) intron (NM_001007239, intron 4 of 7) 7306 NM_001007239 51603 Hs.494705 NM_014955 HPRD:13821 METTL13 5630401D24Rik|KIAA0859|feat methyltransferase like 13 protein-coding 13-PTNLD9-TUMOR_peak_2395 chr1 89239879 89240221 + 12.06605 NA intron (NM_006256, intron 6 of 21) MER21C|LTR|ERVL -89163 NR_110682 101927891 Hs.637231 NR_110682 ENSG00000237505 PKN2-AS1 - PKN2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_31719 chr20 57556100 57556274 + 12.06561 NA promoter-TSS (NM_198976) promoter-TSS (NM_198976) -76 NM_198976 51497 Hs.517148 NM_016397 HPRD:16096 NELFCD NELF-C|NELF-D|TH1|TH1L negative elongation factor complex member C/D protein-coding 13-PTNLD9-TUMOR_peak_31271 chr20 45962872 45963244 + 12.06561 NA intron (NM_001281772, intron 4 of 23) intron (NM_001281772, intron 4 of 23) 15812 NR_024594 100131496 Hs.662547 NR_024594 ENSG00000267882 LOC100131496 - uncharacterized LOC100131496 ncRNA 13-PTNLD9-TUMOR_peak_35602 chr3 123469675 123469839 + 12.06561 NA intron (NM_053025, intron 5 of 33) intron (NM_053025, intron 5 of 33) 61266 NR_046629 100873940 Hs.667316 NR_046629 MYLK-AS2 - MYLK antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_26498 chr2 30584983 30585216 + 12.06561 NA Intergenic Intergenic 15587 NR_122048 285043 Hs.429119 NR_122048 LOC285043 - uncharacterized LOC285043 ncRNA 13-PTNLD9-TUMOR_peak_18189 chr16 1232282 1232583 + 12.06561 NA intron (NM_001005407, intron 2 of 33) intron (NM_001005407, intron 2 of 33) 29191 NM_001005407 8912 Hs.459642 NM_021098 HPRD:07442 CACNA1H CACNA1HB|Cav3.2|ECA6|EIG6 calcium channel, voltage-dependent, T type, alpha 1H subunit protein-coding 13-PTNLD9-TUMOR_peak_41107 chr5 67112067 67112216 + 12.06561 NA Intergenic Intergenic -373563 NR_105003 102467655 Hs.544102 NR_105003 LOC102467655 - uncharacterized LOC102467655 ncRNA 13-PTNLD9-TUMOR_peak_937 chr1 31655292 31655495 + 12.06561 NA exon (NM_024522, exon 5 of 7) exon (NM_024522, exon 5 of 7) 57341 NM_024522 79570 Hs.470259 NM_024522 HPRD:07786 NKAIN1 FAM77C Na+/K+ transporting ATPase interacting 1 protein-coding 13-PTNLD9-TUMOR_peak_13917 chr12 113679625 113679782 + 12.06446 NA intron (NM_017901, intron 2 of 27) L2a|LINE|L2 -2363 NM_001301214 53373 Hs.524763 NM_017901 HPRD:18217 TPCN1 TPC1 two pore segment channel 1 protein-coding 13-PTNLD9-TUMOR_peak_48395 chr7 97501432 97501596 + 12.06308 NA promoter-TSS (NM_001178077) promoter-TSS (NM_001178077) -37 NM_133436 440 Hs.489207 NM_001673 HPRD:00153 ASNS ASNSD|TS11 asparagine synthetase (glutamine-hydrolyzing) protein-coding 13-PTNLD9-TUMOR_peak_21252 chr17 44337383 44337787 + 12.06308 NA Intergenic CpG 16655 NR_026901 644172 Hs.448859 NR_026901 LOC644172 - mitogen-activated protein kinase 8 interacting protein 1 pseudogene pseudo 13-PTNLD9-TUMOR_peak_5548 chr1 224087593 224087800 + 12.05790 NA Intergenic AluSq|SINE|Alu -54022 NM_005426 7159 Hs.523968 NM_005426 HPRD:11803 TP53BP2 53BP2|ASPP2|BBP|P53BP2|PPP1R13A tumor protein p53 binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_32524 chr21 45557992 45558133 + 12.05790 NA intron (NM_198155, intron 4 of 5) intron (NM_198155, intron 4 of 5) 4568 NM_004649 8209 Hs.413482 NM_004649 HPRD:09044 C21orf33 ES1|GT335|HES1|KNPH|KNPI chromosome 21 open reading frame 33 protein-coding 13-PTNLD9-TUMOR_peak_18945 chr16 29616184 29616320 + 12.05790 NA Intergenic Intergenic 8786 NR_002593 81893 Hs.677169 NM_031211 HPRD:13964 SLC7A5P1 DC49|LAT1-3TM|MLAS|hLAT1-3TM solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_56650 chrX 152240679 152240891 + 12.05790 NA promoter-TSS (NM_032882).2 promoter-TSS (NM_032882).2 -12 NM_032882 84968 Hs.533301 NM_032882 HPRD:06637 PNMA6A MA6|PNMA6|PNMA6C paraneoplastic Ma antigen family member 6A protein-coding 13-PTNLD9-TUMOR_peak_50718 chr8 41688233 41688476 + 12.05790 NA intron (NM_001142446, intron 1 of 42) intron (NM_001142446, intron 1 of 42) -33214 NM_020476 286 Hs.654438 NM_000037 HPRD:01693 ANK1 ANK|SPH1|SPH2 ankyrin 1, erythrocytic protein-coding 13-PTNLD9-TUMOR_peak_32631 chr22 16375563 16375722 + 12.04596 NA Intergenic Intergenic 74162 NM_001005239 81061 Hs.554706 NM_001005239 OR11H1 OR22-1 olfactory receptor, family 11, subfamily H, member 1 protein-coding 13-PTNLD9-TUMOR_peak_36996 chr3 184370317 184370533 + 12.04596 NA Intergenic Intergenic 59411 NM_022149 64110 Hs.306123 NM_022149 HPRD:14348 MAGEF1 - melanoma antigen family F, 1 protein-coding 13-PTNLD9-TUMOR_peak_21770 chr17 62503004 62503135 + 12.04345 NA promoter-TSS (NM_138363) promoter-TSS (NM_138363) -89 NM_138363 90799 Hs.569713 NM_138363 HPRD:11279 CEP95 CCDC45 centrosomal protein 95kDa protein-coding 13-PTNLD9-TUMOR_peak_22165 chr17 76370958 76371116 + 12.04345 NA Intergenic Intergenic -3662 NR_110602 9489 Hs.654671 NM_024419 HPRD:17841 PGS1 - phosphatidylglycerophosphate synthase 1 protein-coding 13-PTNLD9-TUMOR_peak_40238 chr5 6710326 6710486 + 12.04345 NA Intergenic Intergenic -2582 NR_103771 100505625 Hs.550028 NR_103771 ENSG00000248677 LOC100505625 - uncharacterized LOC100505625 ncRNA 13-PTNLD9-TUMOR_peak_23052 chr18 43753429 43753689 + 12.03824 NA promoter-TSS (NM_145055) promoter-TSS (NM_145055) -429 NM_001008239 147339 Hs.116486 NM_145055 HPRD:12690 C18orf25 ARKL1|RNF111L1 chromosome 18 open reading frame 25 protein-coding 13-PTNLD9-TUMOR_peak_2501 chr1 94104586 94104846 + 12.03824 NA intron (NM_001261408, intron 5 of 13) intron (NM_001261408, intron 5 of 13) -25014 NM_001261410 8412 Hs.36958 NM_003567 HPRD:05268 BCAR3 NSP2|SH2D3B breast cancer anti-estrogen resistance 3 protein-coding 13-PTNLD9-TUMOR_peak_30660 chr20 25228740 25229001 + 12.03824 NA exon (NM_002862, exon 1 of 20) exon (NM_002862, exon 1 of 20) 164 NM_002862 5834 Hs.368157 NM_002862 HPRD:00720 PYGB GPBB phosphorylase, glycogen; brain protein-coding 13-PTNLD9-TUMOR_peak_25592 chr19 53696558 53696731 + 12.03824 NA promoter-TSS (NM_024733) promoter-TSS (NM_024733) -25 NM_024733 79788 Hs.745230 NM_024733 HPRD:07856 ZNF665 ZFP160L zinc finger protein 665 protein-coding 13-PTNLD9-TUMOR_peak_8506 chr10 124025510 124025693 + 12.03521 NA Intergenic MER74A|LTR|ERVL -5220 NM_144587 118663 Hs.422466 NM_144587 HPRD:12594 BTBD16 C10orf87 BTB (POZ) domain containing 16 protein-coding 13-PTNLD9-TUMOR_peak_22441 chr18 2302663 2302848 + 12.03521 NA Intergenic Intergenic 268734 NM_022840 64863 Hs.126888 NM_022840 HPRD:14390 METTL4 HsT661 methyltransferase like 4 protein-coding 13-PTNLD9-TUMOR_peak_2458 chr1 92075228 92075355 + 12.03521 NA Intergenic Intergenic 108626 NM_001134420 8317 Hs.533573 NM_003503 HPRD:10345 CDC7 CDC7L1|HsCDC7|Hsk1|huCDC7 cell division cycle 7 protein-coding 13-PTNLD9-TUMOR_peak_10989 chr11 95961824 95961978 + 12.03521 NA intron (NM_032427, intron 1 of 4) intron (NM_032427, intron 1 of 4) -112701 NR_036125 100422991 NR_036125 miRBase:MI0014197 MIR1260B - microRNA 1260b ncRNA 13-PTNLD9-TUMOR_peak_18577 chr16 14591968 14592172 + 12.03521 NA intron (NM_001134477, intron 21 of 23) intron (NM_001134477, intron 21 of 23) 132058 NM_002582 5073 Hs.253197 NM_002582 HPRD:07250 PARN DAN poly(A)-specific ribonuclease protein-coding 13-PTNLD9-TUMOR_peak_21330 chr17 46013461 46013782 + 12.03521 NA intron (NR_103857, intron 1 of 2) intron (NR_103857, intron 1 of 2) 5149 NR_103857 100506325 Hs.656008 NR_103856 ENSG00000234494 LOC100506325 - uncharacterized LOC100506325 ncRNA 13-PTNLD9-TUMOR_peak_51940 chr8 127466445 127466580 + 12.03521 NA Intergenic Intergenic 104199 NM_174911 157638 Hs.741352 NM_174911 HPRD:11403 FAM84B BCMP101|NSE2 family with sequence similarity 84, member B protein-coding 13-PTNLD9-TUMOR_peak_7561 chr10 69855064 69855202 + 12.03521 NA Intergenic Intergenic -10741 NM_001256267 84665 Hs.55205 NM_032578 HPRD:10536 MYPN CMD1DD|CMH22|MYOP|RCM4 myopalladin protein-coding 13-PTNLD9-TUMOR_peak_40335 chr5 10962314 10962478 + 12.03521 NA Intergenic LTR18B|LTR|ERVL -201009 NM_001291963 1611 Hs.75189 NM_004394 HPRD:02977 DAP - death-associated protein protein-coding 13-PTNLD9-TUMOR_peak_45697 chr6 89733855 89734152 + 12.03521 NA Intergenic L2b|LINE|L2 -56426 NM_006813 10957 Hs.75969 NM_006813 HPRD:08412 PNRC1 B4-2|PNAS-145|PROL2|PRR2 proline-rich nuclear receptor coactivator 1 protein-coding 13-PTNLD9-TUMOR_peak_43944 chr6 16339309 16339526 + 12.03521 NA intron (NM_001128164, intron 6 of 7) intron (NM_001128164, intron 6 of 7) 100606 NM_006877 2766 Hs.484741 NM_006877 HPRD:00754 GMPR GMPR1 guanosine monophosphate reductase protein-coding 13-PTNLD9-TUMOR_peak_5719 chr1 228652381 228652531 + 12.03521 NA Intergenic CpG 2681 NR_039812 100616308 NR_039812 miRBase:MI0017296 MIR4666A MIR4666|hsa-mir-4666a microRNA 4666a ncRNA 13-PTNLD9-TUMOR_peak_54549 chr9 117568348 117568650 + 12.03521 NA promoter-TSS (NM_005118) promoter-TSS (NM_005118) -91 NM_005118 9966 Hs.23349 NM_005118 HPRD:04956 TNFSF15 TL1|TL1A|VEGI|VEGI192A tumor necrosis factor (ligand) superfamily, member 15 protein-coding 13-PTNLD9-TUMOR_peak_22685 chr18 14826970 14827309 + 12.03521 NA intron (NM_001145029, intron 26 of 35) MER44D|DNA|TcMar-Tigger -3026 NR_036153 100422907 NR_036153 MIR3156-2 - microRNA 3156-2 ncRNA 13-PTNLD9-TUMOR_peak_39287 chr4 125552994 125553174 + 12.03521 NA Intergenic Intergenic -73495 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LOC101927087 - uncharacterized LOC101927087 ncRNA 13-PTNLD9-TUMOR_peak_26261 chr2 20291175 20291758 + 12.03521 NA Intergenic Intergenic -39677 NM_014713 9741 Hs.467807 NM_014713 HPRD:13959 LAPTM4A HUMORF13|LAPTM4|MBNT|Mtrp lysosomal protein transmembrane 4 alpha protein-coding 13-PTNLD9-TUMOR_peak_21576 chr17 55500223 55500367 + 12.03521 NA intron (NM_138962, intron 6 of 13) intron (NM_138962, intron 6 of 13) 100663 NR_110808 101927557 Hs.639984 NR_110808 ENSG00000266100 LOC101927557 - uncharacterized LOC101927557 ncRNA 13-PTNLD9-TUMOR_peak_7877 chr10 81964012 81964275 + 12.03466 NA 5' UTR (NM_001278408, exon 1 of 17) 5' UTR (NM_001278408, exon 1 of 17) 104 NM_001278408 311 Hs.530291 NM_001157 HPRD:03983 ANXA11 ANX11|CAP50 annexin A11 protein-coding 13-PTNLD9-TUMOR_peak_34268 chr3 38067288 38067470 + 12.03466 NA intron (NM_006225, intron 1 of 14) intron (NM_006225, intron 1 of 14) -1101 NR_024071 5333 Hs.80776 NM_006225 HPRD:09073 PLCD1 NDNC3|PLC-III phospholipase C, delta 1 protein-coding 13-PTNLD9-TUMOR_peak_5082 chr1 203432946 203433172 + 12.03466 NA Intergenic Intergenic -11824 NM_002725 5549 Hs.632481 NM_002725 HPRD:03556 PRELP MST161|MSTP161|SLRR2A proline/arginine-rich end leucine-rich repeat protein protein-coding 13-PTNLD9-TUMOR_peak_49613 chr7 150020170 150020748 + 12.02702 NA 5' UTR (NM_001142928, exon 1 of 3) 5' UTR (NM_001142928, exon 1 of 3) 163 NM_023942 65999 Hs.647119 NM_023942 HPRD:08326 LRRC61 HSPC295 leucine rich repeat containing 61 protein-coding 13-PTNLD9-TUMOR_peak_35712 chr3 125802477 125802642 + 12.02619 NA intron (NM_001008485, intron 1 of 11) CpG 575 NM_017836 54946 Hs.573007 NM_017836 HPRD:11580 SLC41A3 SLC41A1-L2 solute carrier family 41, member 3 protein-coding 13-PTNLD9-TUMOR_peak_6364 chr10 5590961 5591099 + 12.02619 NA Intergenic Intergenic -22821 NR_120497 100132159 Hs.239600 NR_120496 CALML3-AS1 - CALML3 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_24247 chr19 15940266 15940466 + 12.02619 NA intron (NR_015379, intron 1 of 2) HERVH-int|LTR|ERV1 609 NR_015379 652995 Hs.644234 NR_015379 ENSG00000214049 UCA1 CUDR|LINC00178|NCRNA00178|UCAT1 urothelial cancer associated 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_9444 chr11 32915844 32916009 + 12.02619 NA intron (NM_001076786, intron 1 of 12) intron (NM_001076786, intron 1 of 12) 1202 NM_001076786 79832 Hs.369368 NM_024774 HPRD:08645 QSER1 - glutamine and serine rich 1 protein-coding 13-PTNLD9-TUMOR_peak_9502 chr11 34366467 34366745 + 12.02363 NA intron (NM_145804, intron 1 of 16) L2a|LINE|L2 12949 NM_145804 25841 Hs.23361 NM_145804 HPRD:10624 ABTB2 ABTB2A|BTBD22 ankyrin repeat and BTB (POZ) domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_41896 chr5 124078705 124078890 + 12.02363 NA intron (NM_020747, intron 1 of 8) intron (NM_020747, intron 1 of 8) 2008 NM_020747 57507 Hs.266616 NM_020747 HPRD:18357 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 13-PTNLD9-TUMOR_peak_20548 chr17 17059411 17059685 + 12.02345 NA intron (NM_015134, intron 13 of 22) intron (NM_015134, intron 13 of 22) 50098 NM_178836 201164 Hs.729079 NM_178836 HPRD:14126 PLD6 ZUC phospholipase D family, member 6 protein-coding 13-PTNLD9-TUMOR_peak_3698 chr1 153031904 153032168 + 12.02345 NA Intergenic Intergenic -2048 NM_005988 6700 Hs.355542 NM_005988 HPRD:01649 SPRR2A - small proline-rich protein 2A protein-coding 13-PTNLD9-TUMOR_peak_5508 chr1 223382209 223382336 + 12.02345 NA Intergenic HERVP71A-int|LTR|ERV1 -65648 NM_003268 7100 Hs.604542 NM_003268 HPRD:04326 TLR5 MELIOS|SLE1|SLEB1|TIL3 toll-like receptor 5 protein-coding 13-PTNLD9-TUMOR_peak_14414 chr13 22257212 22257591 + 12.02345 NA intron (NM_002010, intron 2 of 2) intron (NM_002010, intron 2 of 2) 12186 NM_002010 2254 Hs.111 NM_002010 HPRD:02951 FGF9 FGF-9|GAF|HBFG-9|HBGF-9|SYNS3 fibroblast growth factor 9 protein-coding 13-PTNLD9-TUMOR_peak_11130 chr11 107986364 107986772 + 12.02345 NA Intergenic MER51E|LTR|ERV1 -5690 NM_000019 38 Hs.232375 NM_000019 HPRD:01946 ACAT1 ACAT|MAT|T2|THIL acetyl-CoA acetyltransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_36098 chr3 138213300 138213499 + 12.02345 NA 3' UTR (NM_024491, exon 18 of 18) 3' UTR (NM_024491, exon 18 of 18) 59984 NM_031913 83850 Hs.477711 NM_031913 HPRD:13054 ESYT3 CHR3SYT|E-Syt3|FAM62C extended synaptotagmin-like protein 3 protein-coding 13-PTNLD9-TUMOR_peak_6711 chr10 24780034 24780191 + 12.02345 NA intron (NM_001282767, intron 6 of 18) intron (NM_001282767, intron 6 of 18) 24678 NM_001282770 56243 Hs.445885 NM_019590 HPRD:11132 KIAA1217 SKT KIAA1217 protein-coding 13-PTNLD9-TUMOR_peak_19452 chr16 57791238 57791356 + 12.02345 NA TTS (NM_005550) TTS (NM_005550) 14967 NR_106830 102465463 NR_106830 MIR6772 hsa-mir-6772 microRNA 6772 ncRNA 13-PTNLD9-TUMOR_peak_6497 chr10 12429779 12430130 + 12.02345 NA intron (NM_020397, intron 1 of 9) intron (NM_020397, intron 1 of 9) 38371 NM_153498 57118 Hs.659517 NM_020397 HPRD:06409 CAMK1D CKLiK|CaM-K1|CaMKID calcium/calmodulin-dependent protein kinase ID protein-coding 13-PTNLD9-TUMOR_peak_782 chr1 27014395 27014577 + 12.02345 NA Intergenic Intergenic -8036 NM_006015 8289 Hs.468972 NM_006015 HPRD:04319 ARID1A B120|BAF250|BAF250a|BM029|C1orf4|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1 AT rich interactive domain 1A (SWI-like) protein-coding 13-PTNLD9-TUMOR_peak_27742 chr2 97452767 97452946 + 12.02288 NA intron (NM_020184, intron 1 of 6) intron (NM_020184, intron 1 of 6) -11159 NR_036074 100422928 NR_036074 MIR3127 - microRNA 3127 ncRNA 13-PTNLD9-TUMOR_peak_17642 chr15 74528422 74528698 + 12.02288 NA promoter-TSS (NM_025055) promoter-TSS (NM_025055) -70 NM_025055 80125 Hs.383206 NM_025055 HPRD:09959 CCDC33 CT61 coiled-coil domain containing 33 protein-coding 13-PTNLD9-TUMOR_peak_33468 chr22 46943251 46943602 + 12.02288 NA Intergenic Intergenic -10359 NM_014246 9620 Hs.252387 NM_014246 HPRD:05160 CELSR1 CDHF9|FMI2|HFMI2|ME2 cadherin, EGF LAG seven-pass G-type receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_11516 chr11 124768391 124768578 + 12.02288 NA promoter-TSS (NM_019055) promoter-TSS (NM_019055) -653 NM_001301088 54538 Hs.524121 NM_019055 HPRD:09604 ROBO4 ECSM4|MRB roundabout, axon guidance receptor, homolog 4 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_4376 chr1 171226398 171226596 + 12.02288 NA promoter-TSS (NM_001282692) promoter-TSS (NM_001282692) -565 NM_001282692 2326 Hs.1424 NM_002021 HPRD:00631 FMO1 - flavin containing monooxygenase 1 protein-coding 13-PTNLD9-TUMOR_peak_3935 chr1 156415712 156415851 + 12.02288 NA Intergenic Intergenic -16597 NM_006365 10485 Hs.380027 NM_006365 HPRD:09899 C1orf61 CROC4 chromosome 1 open reading frame 61 protein-coding 13-PTNLD9-TUMOR_peak_2429 chr1 90376443 90376644 + 12.02288 NA intron (NM_001134479, intron 2 of 2) intron (NM_001134479, intron 2 of 2) 83982 NR_002830 492303 Hs.550796 NR_002830 GEMIN8P4 - gem (nuclear organelle) associated protein 8 pseudogene 4 pseudo 13-PTNLD9-TUMOR_peak_2837 chr1 111683161 111683401 + 12.02288 NA promoter-TSS (NM_178454) promoter-TSS (NM_178454) -443 NM_178454 128338 Hs.485606 NM_178454 HPRD:14685 DRAM2 PRO180|TMEM77|WWFQ154 DNA-damage regulated autophagy modulator 2 protein-coding 13-PTNLD9-TUMOR_peak_51096 chr8 68251771 68251996 + 12.02288 NA intron (NM_006421, intron 1 of 38) intron (NM_006421, intron 1 of 38) 4029 NM_006421 10565 Hs.656902 NM_006421 HPRD:09163 ARFGEF1 ARFGEP1|BIG1|P200 ADP-ribosylation factor guanine nucleotide-exchange factor 1 (brefeldin A-inhibited) protein-coding 13-PTNLD9-TUMOR_peak_36462 chr3 154950406 154950628 + 12.01964 NA Intergenic Intergenic -8217 NR_125399 101928190 Hs.121410 NR_125399 ENSG00000241336 LINC01487 - long intergenic non-protein coding RNA 1487 ncRNA 13-PTNLD9-TUMOR_peak_36249 chr3 143006308 143006597 + 12.01964 NA intron (NM_173653, intron 14 of 15) intron (NM_173653, intron 14 of 15) -54636 NR_048544 100885796 Hs.581618 NR_048544 ENSG00000240012 SLC9A9-AS1 - SLC9A9 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_9909 chr11 57826572 57826706 + 12.01964 NA intron (NM_001005212, intron 2 of 2) intron (NM_001005212, intron 2 of 2) 28214 NM_001005186 219952 Hs.690432 NM_001005186 HPRD:15068 OR6Q1 OR11-226 olfactory receptor, family 6, subfamily Q, member 1 protein-coding 13-PTNLD9-TUMOR_peak_55772 chrX 46184826 46185210 + 12.01964 NA TTS (NR_110388) TTS (NR_110388) 2091 NR_110388 101927574 Hs.350952 NR_110388 LINC01186 - long intergenic non-protein coding RNA 1186 ncRNA 13-PTNLD9-TUMOR_peak_9406 chr11 30445541 30445724 + 12.01964 NA intron (NM_001584, intron 3 of 5) intron (NM_001584, intron 3 of 5) 100983 NM_152316 120534 Hs.502208 NM_152316 ARL14EP ARF7EP|C11orf46|dJ299F11.1 ADP-ribosylation factor-like 14 effector protein protein-coding 13-PTNLD9-TUMOR_peak_2576 chr1 95349740 95349943 + 12.01964 NA intron (NM_001301079, intron 11 of 13) intron (NM_001301079, intron 11 of 13) 41523 NM_001286056 1266 Hs.483454 NM_001839 HPRD:03848 CNN3 - calponin 3, acidic protein-coding 13-PTNLD9-TUMOR_peak_51800 chr8 123730514 123730675 + 12.01964 NA Intergenic MLT1I|LTR|ERVL-MaLR -63307 NM_014943 22882 Hs.377090 NM_014943 HPRD:16458 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 13-PTNLD9-TUMOR_peak_50383 chr8 25991367 25991514 + 12.01964 NA Intergenic Intergenic -88800 NM_022659 64641 Hs.491292 NM_022659 HPRD:16848 EBF2 COE2|EBF-2|O/E-3|OE-3 early B-cell factor 2 protein-coding 13-PTNLD9-TUMOR_peak_36374 chr3 150026251 150026731 + 12.01964 NA intron (NR_110187, intron 1 of 1) intron (NR_110187, intron 1 of 1) 15043 NR_110186 101928022 Hs.555199 NR_110186 ENSG00000243550 LINC01214 - long intergenic non-protein coding RNA 1214 ncRNA 13-PTNLD9-TUMOR_peak_18889 chr16 28648367 28648532 + 12.01289 NA Intergenic Intergenic -13542 NM_177536 6817 Hs.567342 NM_001055 HPRD:01372 SULT1A1 HAST1/HAST2|P-PST|PST|ST1A1|ST1A3|STP|STP1|TSPST1 sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1 protein-coding 13-PTNLD9-TUMOR_peak_31374 chr20 48212292 48212642 + 12.00061 NA Intergenic Intergenic -27760 NM_000961 5740 Hs.302085 NM_000961 HPRD:09046 PTGIS CYP8|CYP8A1|PGIS|PTGI prostaglandin I2 (prostacyclin) synthase protein-coding 13-PTNLD9-TUMOR_peak_31495 chr20 50104512 50104753 + 11.99915 NA intron (NM_001258296, intron 3 of 10) intron (NM_001258296, intron 3 of 10) -35118 NR_036162 100422889 NR_036162 MIR3194 - microRNA 3194 ncRNA 13-PTNLD9-TUMOR_peak_700 chr1 24429238 24429795 + 11.99915 NA intron (NM_152372, intron 5 of 36) intron (NM_152372, intron 5 of 36) 9149 NM_152372 127294 Hs.523413 NM_152372 HPRD:08200 MYOM3 - myomesin 3 protein-coding 13-PTNLD9-TUMOR_peak_37255 chr3 192553771 192553944 + 11.99915 NA intron (NM_178496, intron 1 of 1) intron (NM_178496, intron 1 of 1) 82093 NM_178496 151963 Hs.151443 NM_178496 HPRD:14092 MB21D2 C3orf59 Mab-21 domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_37871 chr4 8125081 8125325 + 11.99915 NA intron (NM_001130085, intron 1 of 17) intron (NM_001130085, intron 1 of 17) 35356 NM_001130083 84448 Hs.233404 NM_032432 ENSG00000163995 ABLIM2 - actin binding LIM protein family, member 2 protein-coding 13-PTNLD9-TUMOR_peak_11286 chr11 114309041 114309278 + 11.99915 NA promoter-TSS (NM_015523) promoter-TSS (NM_015523) -949 NM_015523 25996 Hs.677190 NM_015523 HPRD:06192 REXO2 REX2|RFN|SFN RNA exonuclease 2 protein-coding 13-PTNLD9-TUMOR_peak_26712 chr2 43303092 43303234 + 11.99915 NA Intergenic Intergenic -36481 NR_110585 102723854 Hs.570165 NR_110585 LOC102723854 - uncharacterized LOC102723854 ncRNA 13-PTNLD9-TUMOR_peak_19372 chr16 54482080 54482247 + 11.99580 NA Intergenic Intergenic -161785 NM_024336 79191 Hs.499205 NM_024336 HPRD:17162 IRX3 IRX-1|IRXB1 iroquois homeobox 3 protein-coding 13-PTNLD9-TUMOR_peak_36704 chr3 170746586 170747017 + 11.98985 NA Intergenic Intergenic -2033 NM_000340 6514 Hs.167584 NM_000340 HPRD:00685 SLC2A2 GLUT2 solute carrier family 2 (facilitated glucose transporter), member 2 protein-coding 13-PTNLD9-TUMOR_peak_269 chr1 8261377 8261608 + 11.98985 NA Intergenic Intergenic -116653 NM_001080397 50651 Hs.463036 NM_001080397 ENSG00000162426 SLC45A1 DNB5 solute carrier family 45, member 1 protein-coding 13-PTNLD9-TUMOR_peak_17800 chr15 82790260 82790485 + 11.98985 NA intron (NR_026811, intron 1 of 7) intron (NR_026811, intron 1 of 7) 8027 NR_033936 80154 Hs.454640 NM_025084 GOLGA2P10 - golgin A2 pseudogene 10 pseudo 13-PTNLD9-TUMOR_peak_1751 chr1 51433809 51434010 + 11.98985 NA promoter-TSS (NM_001262) promoter-TSS (NM_001262) -458 NM_001262 1031 Hs.525324 NM_001262 HPRD:04534 CDKN2C INK4C|p18|p18-INK4C cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4) protein-coding 13-PTNLD9-TUMOR_peak_42013 chr5 131563162 131563321 + 11.98985 NA promoter-TSS (NM_004199) promoter-TSS (NM_004199) -306 NM_001017973 8974 Hs.519568 NM_004199 HPRD:11862 P4HA2 - prolyl 4-hydroxylase, alpha polypeptide II protein-coding 13-PTNLD9-TUMOR_peak_44116 chr6 24330408 24330548 + 11.98822 NA intron (NM_016356, intron 2 of 9) intron (NM_016356, intron 2 of 9) -26653 NM_181337 353219 Hs.697888 NM_181337 HPRD:09741 KAAG1 RU2AS kidney associated antigen 1 protein-coding 13-PTNLD9-TUMOR_peak_36311 chr3 148584114 148584443 + 11.98330 NA intron (NM_001870, intron 2 of 10) L2c|LINE|L2 1235 NM_001870 1359 Hs.646 NM_001870 HPRD:00270 CPA3 MC-CPA carboxypeptidase A3 (mast cell) protein-coding 13-PTNLD9-TUMOR_peak_28869 chr2 160612421 160612617 + 11.98330 NA intron (NM_001282807, intron 5 of 8) intron (NM_001282807, intron 5 of 8) 22117 NM_001282807 64844 Hs.529272 NM_022826 MARCH7 AXO|AXOT|MARCH-VII|RNF177 membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_14156 chr12 123210674 123210837 + 11.98330 NA Intergenic Intergenic 4374 NM_032554 27198 Hs.610873 NM_032554 HCAR1 GPR104|GPR81|HCA1|LACR1|TA-GPCR|TAGPCR hydroxycarboxylic acid receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_39765 chr4 159644419 159644640 + 11.98330 NA promoter-TSS (NM_005038) promoter-TSS (NM_005038) 23 NM_005038 5481 Hs.183958 NM_005038 HPRD:11875 PPID CYP-40|CYPD peptidylprolyl isomerase D protein-coding 13-PTNLD9-TUMOR_peak_53778 chr9 84946945 84947333 + 11.98330 NA Intergenic Intergenic 343452 NM_001001670 389763 Hs.209545 NM_001001670 HPRD:13531 SPATA31D1 FAM75D1 SPATA31 subfamily D, member 1 protein-coding 13-PTNLD9-TUMOR_peak_27790 chr2 99224766 99225093 + 11.98330 NA promoter-TSS (NM_014044) promoter-TSS (NM_014044) 52 NM_001008215 493753 Hs.596537 NM_001008215 HPRD:17563 COA5 6330578E17Rik|C2orf64|Pet191 cytochrome c oxidase assembly factor 5 protein-coding 13-PTNLD9-TUMOR_peak_5474 chr1 222247027 222247293 + 11.98330 NA Intergenic Intergenic -331642 NM_007207 11221 Hs.497822 NM_007207 HPRD:12320 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 13-PTNLD9-TUMOR_peak_31507 chr20 50573978 50574160 + 11.98330 NA Intergenic AluSx|SINE|Alu -94617 NR_110016 101927678 Hs.683840 NR_110016 ENSG00000227964 LINC01429 - long intergenic non-protein coding RNA 1429 ncRNA 13-PTNLD9-TUMOR_peak_46521 chr6 167028667 167028827 + 11.98330 NA intron (NM_001006932, intron 2 of 21) intron (NM_001006932, intron 2 of 21) 11979 NM_021135 6196 Hs.655277 NM_021135 HPRD:03403 RPS6KA2 HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|pp90RSK3 ribosomal protein S6 kinase, 90kDa, polypeptide 2 protein-coding 13-PTNLD9-TUMOR_peak_12182 chr12 12993024 12993165 + 11.97980 NA Intergenic Intergenic 26814 NM_201224 51202 Hs.719938 NM_016355 HPRD:10863 DDX47 E4-DBP|HQ0256|MSTP162|RRP3 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 protein-coding 13-PTNLD9-TUMOR_peak_14105 chr12 122205724 122205903 + 11.97980 NA intron (NM_001080825, intron 6 of 11) intron (NM_001080825, intron 6 of 11) 25781 NM_019034 54509 Hs.644504 NM_019034 HPRD:15246 RHOF ARHF|RIF ras homolog family member F (in filopodia) protein-coding 13-PTNLD9-TUMOR_peak_34063 chr3 23709874 23710053 + 11.97980 NA Intergenic MER81|DNA|hAT-Blackjack -137421 NM_182666 7324 Hs.164853 NM_003341 HPRD:04225 UBE2E1 UBCH6 ubiquitin-conjugating enzyme E2E 1 protein-coding 13-PTNLD9-TUMOR_peak_5108 chr1 203618708 203618866 + 11.97980 NA intron (NM_001684, intron 1 of 20) AluJb|SINE|Alu 22872 NM_001684 493 Hs.343522 NM_001684 HPRD:00159 ATP2B4 ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x ATPase, Ca++ transporting, plasma membrane 4 protein-coding 13-PTNLD9-TUMOR_peak_55047 chr9 139760763 139760942 + 11.97980 NA promoter-TSS (NM_001281299) promoter-TSS (NM_001281299) -64 NM_003792 8721 Hs.174050 NM_003792 HPRD:09235 EDF1 EDF-1|MBF1 endothelial differentiation-related factor 1 protein-coding 13-PTNLD9-TUMOR_peak_2158 chr1 68639812 68640055 + 11.97980 NA intron (NM_001193334, intron 1 of 10) intron (NM_001193334, intron 1 of 10) 9360 NR_031664 100302279 NR_031664 MIR1262 MIRN1262|hsa-mir-1262 microRNA 1262 ncRNA 13-PTNLD9-TUMOR_peak_31370 chr20 48200192 48200499 + 11.97980 NA Intergenic Intergenic -15638 NM_000961 5740 Hs.302085 NM_000961 HPRD:09046 PTGIS CYP8|CYP8A1|PGIS|PTGI prostaglandin I2 (prostacyclin) synthase protein-coding 13-PTNLD9-TUMOR_peak_35120 chr3 93781633 93781859 + 11.97229 NA promoter-TSS (NM_176815) promoter-TSS (NM_176815) 85 NM_176815 200895 Hs.718516 NM_176815 HPRD:11246 DHFRL1 DHFRP4 dihydrofolate reductase-like 1 protein-coding 13-PTNLD9-TUMOR_peak_13444 chr12 88429179 88429582 + 11.97229 NA 5' UTR (NM_001009894, exon 1 of 7) 5' UTR (NM_001009894, exon 1 of 7) 112 NM_001009894 91298 Hs.591009 NM_001009894 HPRD:13199 C12orf29 - chromosome 12 open reading frame 29 protein-coding 13-PTNLD9-TUMOR_peak_32941 chr22 24342978 24343216 + 11.97229 NA intron (NR_003081, intron 2 of 3) intron (NR_003081, intron 2 of 3) 4161 NR_003081 25774 Hs.652490 NM_015371 GSTTP1 GSTT4|HS322B1A glutathione S-transferase theta pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_11093 chr11 104905822 104906009 + 11.97229 NA promoter-TSS (NM_001223) promoter-TSS (NM_001223) -31 NM_033292 834 Hs.2490 NM_001223 HPRD:00977 CASP1 ICE|IL1BC|P45 caspase 1, apoptosis-related cysteine peptidase protein-coding 13-PTNLD9-TUMOR_peak_17865 chr15 85114026 85114196 + 11.97229 NA promoter-TSS (NR_003661) promoter-TSS (NR_003661) -85 NR_003661 388165 Hs.498348 NM_207382 HPRD:13471 UBE2Q2P1 UBE2QP1 ubiquitin-conjugating enzyme E2Q family member 2 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_27921 chr2 106072123 106072287 + 11.97229 NA Intergenic Intergenic -16975 NM_201557 2274 Hs.443687 NM_001450 HPRD:04026 FHL2 AAG11|DRAL|FHL-2|SLIM-3|SLIM3 four and a half LIM domains 2 protein-coding 13-PTNLD9-TUMOR_peak_52068 chr8 131074286 131074566 + 11.97229 NA intron (NM_018482, intron 27 of 29) L2a|LINE|L2 22588 NR_045385 100507117 Hs.106015 NR_045385 ASAP1-IT2 - ASAP1 intronic transcript 2 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_2098 chr1 65900494 65900800 + 11.97229 NA 3' UTR (NM_017526, exon 4 of 4) 3' UTR (NM_017526, exon 4 of 4) 14248 NM_001198681 54741 Hs.23581 NM_017526 HPRD:13987 LEPROT LEPR|OB-RGRP|OBRGRP|VPS55 leptin receptor overlapping transcript protein-coding 13-PTNLD9-TUMOR_peak_9706 chr11 46942416 46942567 + 11.97229 NA Intergenic Intergenic -2318 NM_002334 4038 Hs.4930 NM_002334 HPRD:18517 LRP4 CLSS|LRP-4|LRP10|MEGF7|SOST2 low density lipoprotein receptor-related protein 4 protein-coding 13-PTNLD9-TUMOR_peak_32368 chr21 41421352 41421639 + 11.97229 NA intron (NR_073202, intron 30 of 32) intron (NR_073202, intron 30 of 32) 162863 NR_039917 100616148 NR_039917 MIR4760 - microRNA 4760 ncRNA 13-PTNLD9-TUMOR_peak_15916 chr14 59800598 59800782 + 11.97229 NA intron (NM_001270520, intron 15 of 24) intron (NM_001270520, intron 15 of 24) 70531 NM_014992 23002 Hs.19156 NM_014992 HPRD:09433 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 13-PTNLD9-TUMOR_peak_13953 chr12 117251071 117251387 + 11.97229 NA intron (NM_001109903, intron 7 of 11) L2c|LINE|L2 68003 NR_073189 8739 Hs.87247 NM_003806 HRK DP5|HARAKIRI harakiri, BCL2 interacting protein protein-coding 13-PTNLD9-TUMOR_peak_49982 chr8 6698306 6698474 + 11.96521 NA intron (NR_045217, intron 2 of 2) intron (NR_045217, intron 2 of 2) -5224 NM_207411 389610 Hs.558840 NM_207411 XKR5 HARL2754|UNQ2754|XRG5A|XRG5BM XK, Kell blood group complex subunit-related family, member 5 protein-coding 13-PTNLD9-TUMOR_peak_13061 chr12 58329727 58330041 + 11.96521 NA promoter-TSS (NR_038269) promoter-TSS (NR_038269) 63 NR_038269 100506844 Hs.90286 NR_038269 LOC100506844 - uncharacterized LOC100506844 ncRNA 13-PTNLD9-TUMOR_peak_4651 chr1 181906187 181906327 + 11.96521 NA Intergenic Intergenic 124590 NM_001009992 127665 Hs.684328 NM_001009992 HPRD:18361 ZNF648 - zinc finger protein 648 protein-coding 13-PTNLD9-TUMOR_peak_11179 chr11 110850494 110850873 + 11.96521 NA Intergenic Intergenic -266771 NM_001258418 57569 Hs.6136 NM_020809 HPRD:10657 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 13-PTNLD9-TUMOR_peak_343 chr1 9719591 9719860 + 11.96521 NA intron (NM_005026, intron 1 of 23) L1MB3|LINE|L1 -5081 NR_027045 644997 Hs.568595 NM_001045478 ENSG00000179840 C1orf200 - chromosome 1 open reading frame 200 ncRNA 13-PTNLD9-TUMOR_peak_8295 chr10 106697414 106697609 + 11.96521 NA intron (NM_014978, intron 3 of 26) intron (NM_014978, intron 3 of 26) -271537 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_56188 chrX 77395058 77395273 + 11.96521 NA promoter-TSS (NM_015975) promoter-TSS (NM_015975) 14 NM_015975 51616 Hs.592248 NM_015975 HPRD:06739 TAF9B DN-7|DN7|TAF9L|TAFII31L|TFIID-31 TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa protein-coding 13-PTNLD9-TUMOR_peak_38958 chr4 100815499 100815649 + 11.96521 NA non-coding (NR_024170, exon 1 of 6) non-coding (NR_024170, exon 1 of 6) 129 NR_024170 8649 Hs.433332 NM_021970 HPRD:04485 LAMTOR3 MAP2K1IP1|MAPBP|MAPKSP1|MP1|PRO0633|Ragulator3 late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 protein-coding 13-PTNLD9-TUMOR_peak_34698 chr3 54076619 54076752 + 11.96521 NA Intergenic Intergenic -80008 NM_018398 55799 Hs.656687 NM_018398 HPRD:05907 CACNA2D3 HSA272268 calcium channel, voltage-dependent, alpha 2/delta subunit 3 protein-coding 13-PTNLD9-TUMOR_peak_26597 chr2 37760499 37760627 + 11.96521 NA Intergenic AluYc|SINE|Alu 138779 NM_006449 10602 Hs.369574 NM_006449 HPRD:09364 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein (Rho GTPase binding) 3 protein-coding 13-PTNLD9-TUMOR_peak_50891 chr8 49282710 49282899 + 11.96521 NA Intergenic L1MD2|LINE|L1 -181323 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 13-PTNLD9-TUMOR_peak_4332 chr1 168312057 168312223 + 11.96521 NA Intergenic Intergenic -32622 NR_030284 693142 NR_030284 miRBase:MI0003563 MIR557 MIRN557|hsa-mir-557 microRNA 557 ncRNA 13-PTNLD9-TUMOR_peak_34654 chr3 52271595 52271833 + 11.96457 NA intron (NM_007284, intron 1 of 8) intron (NM_007284, intron 1 of 8) 1469 NM_007284 11344 Hs.436439 NM_007284 HPRD:08464 TWF2 A6RP|A6r|PTK9L twinfilin actin-binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_44431 chr6 30069831 30069980 + 11.96457 NA TTS (NM_007028) TTS (NM_007028) 10962 NM_007028 11074 Hs.493275 NM_007028 HPRD:10281 TRIM31 C6orf13|HCG1|HCGI|RNF tripartite motif containing 31 protein-coding 13-PTNLD9-TUMOR_peak_20057 chr16 88125392 88125598 + 11.96024 NA Intergenic Intergenic 9096 NR_120310 400553 Hs.592071 NR_120310 ENSG00000205037 LOC400553 - uncharacterized LOC400553 ncRNA 13-PTNLD9-TUMOR_peak_7702 chr10 73599987 73600184 + 11.96024 NA intron (NM_001042465, intron 1 of 14) intron (NM_001042465, intron 1 of 14) 10997 NM_002778 5660 Hs.523004 NM_002778 HPRD:01460 PSAP GLBA|SAP1 prosaposin protein-coding 13-PTNLD9-TUMOR_peak_8861 chr11 3533366 3533709 + 11.96024 NA Intergenic HERVS71-int|LTR|ERV1 -114153 NR_002720 7221 Hs.131910 NR_002720 ENSG00000182048 TRPC2 - transient receptor potential cation channel, subfamily C, member 2, pseudogene pseudo 13-PTNLD9-TUMOR_peak_29370 chr2 191812531 191812734 + 11.96024 NA intron (NM_014905, intron 14 of 17) intron (NM_014905, intron 14 of 17) 66344 NM_007315 6772 Hs.642990 NM_007315 HPRD:02777 STAT1 CANDF7|ISGF-3|STAT91 signal transducer and activator of transcription 1, 91kDa protein-coding 13-PTNLD9-TUMOR_peak_28715 chr2 151336120 151336298 + 11.96024 NA intron (NM_005168, intron 3 of 5) intron (NM_005168, intron 3 of 5) 8000 NM_005168 390 Hs.6838 NM_005168 HPRD:04233 RND3 ARHE|Rho8|RhoE|memB Rho family GTPase 3 protein-coding 13-PTNLD9-TUMOR_peak_42037 chr5 131800507 131800673 + 11.96024 NA intron (NR_045116, intron 3 of 3) intron (NR_045116, intron 3 of 3) 25875 NM_002198 3659 Hs.436061 NM_002198 HPRD:00961 IRF1 IRF-1|MAR interferon regulatory factor 1 protein-coding 13-PTNLD9-TUMOR_peak_7516 chr10 64577801 64577970 + 11.95657 NA intron (NM_001136178, intron 2 of 3) CpG-2873 1042 NM_001136178 1959 Hs.1395 NM_000399 HPRD:00551 EGR2 AT591|CMT1D|CMT4E|KROX20 early growth response 2 protein-coding 13-PTNLD9-TUMOR_peak_28462 chr2 131862186 131862356 + 11.95657 NA promoter-TSS (NM_017958) promoter-TSS (NM_017958) -149 NR_049792 55041 Hs.469944 NM_017958 HPRD:15144 PLEKHB2 EVT2 pleckstrin homology domain containing, family B (evectins) member 2 protein-coding 13-PTNLD9-TUMOR_peak_12536 chr12 38050646 38050819 + 11.95642 NA Intergenic ALR/Alpha|Satellite|centr -659825 NM_001013620 144245 Hs.259305 NM_001013620 ALG10B ALG10|KCR1 ALG10B, alpha-1,2-glucosyltransferase protein-coding 13-PTNLD9-TUMOR_peak_18630 chr16 16169834 16170293 + 11.95407 NA intron (NM_004996, intron 14 of 30) intron (NM_004996, intron 14 of 30) 126629 NM_004996 4363 Hs.391464 NM_004996 HPRD:01153 ABCC1 ABC29|ABCC|GS-X|MRP|MRP1 ATP-binding cassette, sub-family C (CFTR/MRP), member 1 protein-coding 13-PTNLD9-TUMOR_peak_9077 chr11 12063996 12064199 + 11.95407 NA Intergenic L2b|LINE|L2 -33180 NM_013253 27122 Hs.292156 NM_013253 HPRD:05659 DKK3 REIC|RIG dickkopf WNT signaling pathway inhibitor 3 protein-coding 13-PTNLD9-TUMOR_peak_5903 chr1 234651594 234651962 + 11.95407 NA Intergenic Intergenic 15747 NR_038426 100506795 Hs.448989 NR_038426 ENSG00000231768 LINC01354 - long intergenic non-protein coding RNA 1354 ncRNA 13-PTNLD9-TUMOR_peak_25233 chr19 47756671 47757037 + 11.95202 NA Intergenic AluJr|SINE|Alu -2877 NM_015603 26093 Hs.227782 NM_015603 HPRD:10813 CCDC9 - coiled-coil domain containing 9 protein-coding 13-PTNLD9-TUMOR_peak_49580 chr7 149086120 149086323 + 11.94628 NA Intergenic L1ME3A|LINE|L1 71832 NM_015694 27153 Hs.38512 NM_015694 HPRD:13849 ZNF777 - zinc finger protein 777 protein-coding 13-PTNLD9-TUMOR_peak_21216 chr17 43321158 43321466 + 11.94628 NA exon (NM_005892, exon 18 of 27) exon (NM_005892, exon 18 of 27) -3980 NR_110325 100133991 Hs.668927 NR_024434 ENSG00000267278 MAP3K14-AS1 - MAP3K14 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_18222 chr16 2065437 2065745 + 11.93684 NA Intergenic AluJb|SINE|Alu -3930 NM_001099456 283869 Hs.233533 NM_001099456 ENSG00000183971 NPW L8|L8C|PPL8|PPNPW neuropeptide W protein-coding 13-PTNLD9-TUMOR_peak_53811 chr9 86549626 86549763 + 11.93684 NA Intergenic MER92C|LTR|ERV1 -13314 NM_001271928 55582 Hs.697514 NM_017576 HPRD:11179 KIF27 - kinesin family member 27 protein-coding 13-PTNLD9-TUMOR_peak_21586 chr17 55911663 55912074 + 11.93684 NA Intergenic Intergenic 15565 NM_016070 51649 Hs.5836 NM_016070 MRPS23 HSPC329|MRP-S23 mitochondrial ribosomal protein S23 protein-coding 13-PTNLD9-TUMOR_peak_45584 chr6 81167160 81167330 + 11.93684 NA Intergenic Intergenic 350901 NM_183050 594 Hs.654441 NM_000056 HPRD:02011 BCKDHB E1B|dJ279A18.1 branched chain keto acid dehydrogenase E1, beta polypeptide protein-coding 13-PTNLD9-TUMOR_peak_46849 chr7 6911100 6911388 + 11.93684 NA Intergenic HERVE-int|LTR|ERV1 -45318 NM_198097 221960 Hs.567779 NM_198097 HPRD:12916 CCZ1B C7orf28B|H_NH0577018.2 CCZ1 vacuolar protein trafficking and biogenesis associated homolog B (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_32988 chr22 25506883 25507204 + 11.93684 NA intron (NR_038941, intron 2 of 4) GA-rich|Low_complexity|Low_complexity 1616 NR_038941 100128531 Hs.662126 NR_038941 ENSG00000203280 LOC100128531 - uncharacterized LOC100128531 ncRNA 13-PTNLD9-TUMOR_peak_19059 chr16 31129815 31130131 + 11.93289 NA intron (NM_182958, intron 1 of 9) L2c|LINE|L2 988 NM_032188 84148 Hs.533803 NM_032188 HPRD:11381 KAT8 MOF|MYST1|ZC2HC8|hMOF K(lysine) acetyltransferase 8 protein-coding 13-PTNLD9-TUMOR_peak_33936 chr3 15369588 15369748 + 11.93269 NA intron (NM_001018009, intron 2 of 8) intron (NM_001018009, intron 2 of 8) 4468 NM_004844 9467 Hs.257761 NM_004844 HPRD:12030 SH3BP5 SAB|SH3BP-5 SH3-domain binding protein 5 (BTK-associated) protein-coding 13-PTNLD9-TUMOR_peak_27693 chr2 96095540 96095722 + 11.93269 NA Intergenic Intergenic 27183 NM_016044 51011 Hs.531247 NM_016044 HPRD:13287 FAHD2A - fumarylacetoacetate hydrolase domain containing 2A protein-coding 13-PTNLD9-TUMOR_peak_45184 chr6 45885302 45885567 + 11.93150 NA intron (NR_045672, intron 1 of 2) intron (NR_045672, intron 1 of 2) 19900 NR_045674 53405 Hs.485489 NM_016929 HPRD:06292 CLIC5 MST130|MSTP130 chloride intracellular channel 5 protein-coding 13-PTNLD9-TUMOR_peak_32281 chr21 38581036 38581273 + 11.93150 NA intron (NR_026719, intron 2 of 2) intron (NR_026719, intron 2 of 2) 350 NR_026719 257203 Hs.505159 NM_148675 HPRD:10925 DSCR9 NCRNA00038 Down syndrome critical region gene 9 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_1833 chr1 54378727 54379101 + 11.93150 NA Intergenic LTR16A1|LTR|ERVL 19053 NM_213593 1733 Hs.251415 NM_000792 HPRD:01002 DIO1 5DI|TXDI1 deiodinase, iodothyronine, type I protein-coding 13-PTNLD9-TUMOR_peak_53642 chr9 75752320 75752551 + 11.93150 NA Intergenic Intergenic -14346 NM_000700 301 Hs.494173 NM_000700 HPRD:01060 ANXA1 ANX1|LPC1 annexin A1 protein-coding 13-PTNLD9-TUMOR_peak_53381 chr9 46861946 46862115 + 11.93150 NA Intergenic CpG 98239 NR_046203 643648 Hs.640178 NR_046203 LINC01189 - long intergenic non-protein coding RNA 1189 ncRNA 13-PTNLD9-TUMOR_peak_12923 chr12 54608554 54608720 + 11.93150 NA Intergenic Intergenic 16623 NR_039851 100616400 NR_039851 miRBase:MI0017335 MIR3198-2 - microRNA 3198-2 ncRNA 13-PTNLD9-TUMOR_peak_15639 chr14 45179745 45179855 + 11.93150 NA Intergenic L1HS|LINE|L1 -186707 NM_001017923 122525 Hs.82098 NM_001017923 HPRD:18544 C14orf28 DRIP-1|DRIP1|c14_5270 chromosome 14 open reading frame 28 protein-coding 13-PTNLD9-TUMOR_peak_22566 chr18 9899160 9899460 + 11.93150 NA Intergenic Intergenic 13587 NM_001098529 84203 Hs.98712 NM_032243 HPRD:11654 TXNDC2 SPTRX|SPTRX1 thioredoxin domain containing 2 (spermatozoa) protein-coding 13-PTNLD9-TUMOR_peak_9287 chr11 19940932 19941103 + 11.93150 NA intron (NM_182964, intron 6 of 37) intron (NM_182964, intron 6 of 37) -103085 NM_001111019 89797 Hs.64341 NM_145117 HPRD:07385 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 13-PTNLD9-TUMOR_peak_35619 chr3 123986403 123986541 + 11.93150 NA intron (NM_001024660, intron 4 of 59) MER5B|DNA|hAT-Charlie -106707 NR_106731 102464832 NR_106731 MIR6083 hsa-mir-6083 microRNA 6083 ncRNA 13-PTNLD9-TUMOR_peak_4323 chr1 168082291 168082491 + 11.93150 NA intron (NM_001267611, intron 1 of 5) intron (NM_001267611, intron 1 of 5) 23283 NM_001267612 23432 Hs.271809 NM_007369 HPRD:17070 GPR161 RE2 G protein-coupled receptor 161 protein-coding 13-PTNLD9-TUMOR_peak_2558 chr1 95045478 95045678 + 11.93150 NA Intergenic L1PA11|LINE|L1 -38165 NM_001993 2152 Hs.62192 NM_001993 HPRD:00603 F3 CD142|TF|TFA coagulation factor III (thromboplastin, tissue factor) protein-coding 13-PTNLD9-TUMOR_peak_13095 chr12 60599401 60599548 + 11.93150 NA Intergenic MSTD|LTR|ERVL-MaLR 516356 NR_073056 9194 Hs.88156 NM_004731 HPRD:06791 SLC16A7 MCT2 solute carrier family 16 (monocarboxylate transporter), member 7 protein-coding 13-PTNLD9-TUMOR_peak_53332 chr9 44420020 44420240 + 11.93150 NA Intergenic CpG 35545 NR_121564 101927827 Hs.738704 NR_121564 ENSG00000229311 LOC101927827 - uncharacterized LOC101927827 ncRNA 13-PTNLD9-TUMOR_peak_31615 chr20 54011274 54011447 + 11.93150 NA Intergenic L2b|LINE|L2 -28221 NR_110629 102723578 Hs.446269 NR_110629 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 13-PTNLD9-TUMOR_peak_53700 chr9 79481787 79481989 + 11.92532 NA intron (NM_015225, intron 1 of 18) intron (NM_015225, intron 1 of 18) 39115 NM_015225 158471 Hs.262857 NM_015225 HPRD:12970 PRUNE2 A214N16.3|BMCC1|BNIPXL|C9orf65|KIAA0367|bA214N16.3 prune homolog 2 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_23421 chr18 67947922 67948056 + 11.92532 NA Intergenic MER41B|LTR|ERV1 -8148 NM_004232 9306 Hs.44439 NM_004232 HPRD:05491 SOCS6 CIS-4|CIS4|HSPC060|SOCS-4|SOCS-6|SOCS4|SSI4|STAI4|STATI4 suppressor of cytokine signaling 6 protein-coding 13-PTNLD9-TUMOR_peak_35335 chr3 111527401 111527566 + 11.92532 NA intron (NM_001134437, intron 1 of 17) intron (NM_001134437, intron 1 of 17) -50544 NM_001134438 90102 Hs.603252 NM_145753 HPRD:06611 PHLDB2 LL5b|LL5beta pleckstrin homology-like domain, family B, member 2 protein-coding 13-PTNLD9-TUMOR_peak_21486 chr17 48922968 48923254 + 11.92532 NA Intergenic Intergenic 10506 NM_175575 124857 Hs.211475 NM_175575 HPRD:18303 WFIKKN2 GASP-1|WFDC20B|WFIKKNRP|hGASP-1 WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_23943 chr19 10644362 10644755 + 11.92532 NA Intergenic Intergenic -10012 NR_104025 84971 Hs.512799 NM_032885 HPRD:07005 ATG4D APG4-D|APG4D|AUTL4 autophagy related 4D, cysteine peptidase protein-coding 13-PTNLD9-TUMOR_peak_27265 chr2 73207692 73207947 + 11.92532 NA intron (NM_144579, intron 10 of 13) intron (NM_144579, intron 10 of 13) 63215 NM_004097 2016 Hs.516090 NM_004097 HPRD:08963 EMX1 - empty spiracles homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_23733 chr19 4831675 4831867 + 11.92532 NA promoter-TSS (NM_182919) promoter-TSS (NM_182919) -17 NM_182919 148022 Hs.29344 NM_014261 HPRD:06350 TICAM1 IIAE6|MyD88-3|PRVTIRB|TICAM-1|TRIF toll-like receptor adaptor molecule 1 protein-coding 13-PTNLD9-TUMOR_peak_48192 chr7 84041493 84041790 + 11.92532 NA Intergenic Intergenic -120151 NR_110080 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 13-PTNLD9-TUMOR_peak_29028 chr2 170111411 170111647 + 11.92532 NA intron (NM_004525, intron 19 of 78) intron (NM_004525, intron 19 of 78) 107593 NM_004525 4036 Hs.657729 NM_004525 HPRD:02509 LRP2 DBS|GP330 low density lipoprotein receptor-related protein 2 protein-coding 13-PTNLD9-TUMOR_peak_19696 chr16 70611288 70611569 + 11.92532 NA 3' UTR (NM_012426, exon 26 of 26) 3' UTR (NM_012426, exon 26 of 26) -2370 NM_001172771 146433 Hs.461214 NM_152456 HPRD:14582 IL34 C16orf77|IL-34 interleukin 34 protein-coding 13-PTNLD9-TUMOR_peak_48146 chr7 80352216 80352392 + 11.92532 NA Intergenic Intergenic 76335 NM_001289908 948 Hs.120949 NM_000072 HPRD:01430 CD36 BDPLT10|CHDS7|FAT|GP3B|GP4|GPIV|PASIV|SCARB3 CD36 molecule (thrombospondin receptor) protein-coding 13-PTNLD9-TUMOR_peak_26186 chr2 15870634 15871045 + 11.92532 NA Intergenic Intergenic 39933 NR_110201 101926966 Hs.502835 NR_110201 ENSG00000231031 LOC101926966 - uncharacterized LOC101926966 ncRNA 13-PTNLD9-TUMOR_peak_6753 chr10 27529397 27529559 + 11.92297 NA non-coding (NR_073196, exon 1 of 10) non-coding (NR_073196, exon 1 of 10) 330 NM_001301252 91452 Hs.530597 NM_145698 HPRD:12415 ACBD5 - acyl-CoA binding domain containing 5 protein-coding 13-PTNLD9-TUMOR_peak_22772 chr18 20864140 20864300 + 11.92130 NA Intergenic MER41B|LTR|ERV1 128431 NM_138375 91768 Hs.11108 NM_138375 HPRD:16461 CABLES1 CABL1|CABLES|HsT2563|IK3-1 Cdk5 and Abl enzyme substrate 1 protein-coding 13-PTNLD9-TUMOR_peak_28576 chr2 137003867 137004020 + 11.92130 NA Intergenic Intergenic -128218 NM_003467 7852 Hs.593413 NM_003467 HPRD:01217 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM chemokine (C-X-C motif) receptor 4 protein-coding 13-PTNLD9-TUMOR_peak_19993 chr16 85780125 85780308 + 11.92130 NA intron (NR_107005, intron 6 of 6) intron (NR_107005, intron 6 of 6) 4473 NM_206967 404550 Hs.461655 NM_206967 HPRD:14460 C16orf74 - chromosome 16 open reading frame 74 protein-coding 13-PTNLD9-TUMOR_peak_36667 chr3 169530705 169530865 + 11.91817 NA promoter-TSS (NM_001172780) promoter-TSS (NM_001172780) -211 NM_153353 151827 Hs.591289 NM_153353 HPRD:14519 LRRC34 - leucine rich repeat containing 34 protein-coding 13-PTNLD9-TUMOR_peak_47025 chr7 21978975 21979178 + 11.91817 NA intron (NM_018719, intron 1 of 9) intron (NM_018719, intron 1 of 9) 6466 NM_018719 55536 Hs.744069 NM_018719 HPRD:11481 CDCA7L JPO2|R1|RAM2 cell division cycle associated 7-like protein-coding 13-PTNLD9-TUMOR_peak_47853 chr7 72604580 72604952 + 11.91743 NA intron (NR_002206, intron 9 of 23) MER117|DNA|hAT-Charlie -29908 NR_003186 654816 Hs.655201 NR_003186 ENSG00000182487 NCF1B NCF-1B|SH3PXD1B neutrophil cytosolic factor 1B pseudogene pseudo 13-PTNLD9-TUMOR_peak_37766 chr4 6274680 6274824 + 11.91380 NA intron (NM_001145853, intron 1 of 7) intron (NM_001145853, intron 1 of 7) 3175 NM_006005 7466 Hs.518602 NM_006005 HPRD:05864 WFS1 CTRCT41|WFRS|WFS|WFSL Wolfram syndrome 1 (wolframin) protein-coding 13-PTNLD9-TUMOR_peak_2897 chr1 113346917 113347042 + 11.90766 NA Intergenic Intergenic 46286 NR_103746 100996702 Hs.632431 NR_103746 ENSG00000215866 LINC01356 - long intergenic non-protein coding RNA 1356 ncRNA 13-PTNLD9-TUMOR_peak_32108 chr21 32608408 32608604 + 11.90766 NA intron (NM_003253, intron 7 of 28) FordPrefect_a|DNA|hAT-Tip100 -197711 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 13-PTNLD9-TUMOR_peak_2651 chr1 101062684 101062895 + 11.90766 NA Intergenic MLT1J2|LTR|ERVL-MaLR 49771 NR_038914 100128787 Hs.536050 NR_038914 LINC01349 - long intergenic non-protein coding RNA 1349 ncRNA 13-PTNLD9-TUMOR_peak_43067 chr5 172899381 172899546 + 11.90766 NA Intergenic Intergenic -107174 NR_027108 285593 Hs.409730 NR_027108 ENSG00000253955 LOC285593 - uncharacterized LOC285593 ncRNA 13-PTNLD9-TUMOR_peak_43611 chr6 5205319 5205505 + 11.90766 NA intron (NM_001164840, intron 2 of 2) intron (NM_001164840, intron 2 of 2) 55771 NM_001164840 57128 Hs.387755 NM_020408 HPRD:12855 LYRM4 C6orf149|CGI-203|COXPD19|ISD11 LYR motif containing 4 protein-coding 13-PTNLD9-TUMOR_peak_9409 chr11 31136051 31136293 + 11.90766 NA Intergenic L2a|LINE|L2 -121939 NM_020869 100506627 Hs.530438 NM_020869 DCDC5 - doublecortin domain containing 5 protein-coding 13-PTNLD9-TUMOR_peak_31544 chr20 51879020 51879251 + 11.90766 NA intron (NM_173485, intron 2 of 2) intron (NM_173485, intron 2 of 2) 77313 NM_001193421 128553 Hs.473117 NM_173485 HPRD:10730 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 13-PTNLD9-TUMOR_peak_42566 chr5 148514132 148514333 + 11.90766 NA Intergenic Intergenic -6814 NM_001301015 22885 Hs.49688 NM_014945 HPRD:12411 ABLIM3 - actin binding LIM protein family, member 3 protein-coding 13-PTNLD9-TUMOR_peak_46316 chr6 151373482 151373735 + 11.90766 NA intron (NM_001242768, intron 26 of 27) L2c|LINE|L2 186139 NM_001242768 25902 Hs.591343 NM_015440 HPRD:09967 MTHFD1L FTHFSDC1|MTC1THFS|dJ292B18.2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like protein-coding 13-PTNLD9-TUMOR_peak_47905 chr7 73330998 73331184 + 11.90766 NA Intergenic Intergenic 55602 NM_182504 135886 Hs.647026 NM_182504 HPRD:15662 WBSCR28 - Williams-Beuren syndrome chromosome region 28 protein-coding 13-PTNLD9-TUMOR_peak_22507 chr18 6741375 6741566 + 11.90766 NA Intergenic Intergenic -92962 NM_001010000 79822 Hs.183114 NM_030672 HPRD:10961 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 13-PTNLD9-TUMOR_peak_27180 chr2 69879426 69879611 + 11.90766 NA Intergenic Intergenic -8541 NM_014911 22848 Hs.468878 NM_014911 AAK1 - AP2 associated kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_6804 chr10 29957657 29957892 + 11.90766 NA intron (NM_003174, intron 2 of 35) intron (NM_003174, intron 2 of 35) -33873 NM_021738 6840 Hs.499209 NM_003174 HPRD:04992 SVIL - supervillin protein-coding 13-PTNLD9-TUMOR_peak_47564 chr7 56160732 56160866 + 11.90766 NA promoter-TSS (NM_006213) promoter-TSS (NM_006213) -110 NR_047689 5260 Hs.730821 NM_006213 PHKG1 PHKG phosphorylase kinase, gamma 1 (muscle) protein-coding 13-PTNLD9-TUMOR_peak_33102 chr22 30818934 30819069 + 11.90201 NA 3' UTR (NM_001204204, exon 10 of 10) 3' UTR (NM_001204204, exon 10 of 10) -2610 NM_016498 51537 Hs.713636 NM_016498 HPRD:17612 MTFP1 MTP18 mitochondrial fission process 1 protein-coding 13-PTNLD9-TUMOR_peak_31440 chr20 49057326 49057614 + 11.89456 NA Intergenic Plat_L3|LINE|CR1 -69388 NM_002827 5770 Hs.417549 NM_002827 HPRD:01477 PTPN1 PTP1B protein tyrosine phosphatase, non-receptor type 1 protein-coding 13-PTNLD9-TUMOR_peak_23899 chr19 9732472 9732634 + 11.89456 NA promoter-TSS (NM_152289) promoter-TSS (NM_152289) 395 NR_122038 284385 Hs.651747 NM_001242812 ENSG00000267106 ZNF561-AS1 C19orf82 ZNF561 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_38412 chr4 53691568 53691924 + 11.89456 NA Intergenic Intergenic 35585 NR_040106 152578 Hs.383806 NR_040106 ENSG00000250302 LOC152578 - uncharacterized LOC152578 ncRNA 13-PTNLD9-TUMOR_peak_9968 chr11 60682969 60683111 + 11.89456 NA intron (NM_024092, intron 1 of 3) MER5B|DNA|hAT-Charlie 1669 NM_024092 79073 Hs.13662 NM_024092 HPRD:14687 TMEM109 - transmembrane protein 109 protein-coding 13-PTNLD9-TUMOR_peak_49359 chr7 139702156 139702304 + 11.89456 NA intron (NR_029394, intron 9 of 12) MIR3|SINE|MIR 61291 NM_022750 64761 Hs.12646 NM_022750 HPRD:15696 PARP12 ARTD12|MST109|MSTP109|ZC3H1|ZC3HDC1 poly (ADP-ribose) polymerase family, member 12 protein-coding 13-PTNLD9-TUMOR_peak_31983 chr21 18983969 18984122 + 11.88932 NA intron (NM_001130914, intron 1 of 5) CpG 1223 NM_006806 10950 Hs.473420 NM_006806 HPRD:10415 BTG3 ANA|TOB5|TOB55|TOFA BTG family, member 3 protein-coding 13-PTNLD9-TUMOR_peak_5764 chr1 229364952 229365333 + 11.88932 NA Intergenic Intergenic -41667 NM_001271998 5867 Hs.296169 NM_004578 HPRD:01541 RAB4A HRES-1|HRES-1/RAB4|HRES1|RAB4 RAB4A, member RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_25894 chr1_gl000192_random 499950 500152 + 11.88879 NA Intergenic Intergenic -31368 NR_120328 102724558 Hs.712738 NR_120328 LOC102724558 - uncharacterized LOC102724558 ncRNA 13-PTNLD9-TUMOR_peak_27510 chr2 87756024 87756142 + 11.88768 NA intron (NR_024206, intron 1 of 1) intron (NR_024206, intron 1 of 1) 1109 NR_024206 112597 Hs.652166 NM_052871 HPRD:14654 LINC00152 C2orf59|NCRNA00152 long intergenic non-protein coding RNA 152 ncRNA 13-PTNLD9-TUMOR_peak_10573 chr11 72906360 72906638 + 11.88768 NA Intergenic Intergenic -22844 NM_176072 5029 Hs.339 NM_002564 HPRD:02499 P2RY2 HP2U|P2RU1|P2U|P2U1|P2UR|P2Y2|P2Y2R purinergic receptor P2Y, G-protein coupled, 2 protein-coding 13-PTNLD9-TUMOR_peak_30657 chr20 25177161 25177367 + 11.88198 NA non-coding (NR_109994, exon 1 of 6) non-coding (NR_109994, exon 1 of 6) 264 NR_109994 101926889 Hs.585997 NR_109994 LOC101926889 - uncharacterized LOC101926889 ncRNA 13-PTNLD9-TUMOR_peak_12622 chr12 45609727 45609903 + 11.88198 NA promoter-TSS (NM_001204803) promoter-TSS (NM_001204803) -26 NR_037144 51054 Hs.233495 NM_015899 HPRD:15143 PLEKHA8P1 PLEKHA9 pleckstrin homology domain containing, family A member 8 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_40311 chr5 10513970 10514145 + 11.88198 NA Intergenic MER68B|LTR|ERVL -11217 NR_104606 101929412 Hs.508287 NR_104606 ENSG00000249396 LOC101929412 - uncharacterized LOC101929412 ncRNA 13-PTNLD9-TUMOR_peak_15264 chr14 21455126 21455269 + 11.88193 NA Intergenic Intergenic -2768 NM_022734 64745 Hs.512693 NM_022734 HPRD:13379 METTL17 METT11D1 methyltransferase like 17 protein-coding 13-PTNLD9-TUMOR_peak_17817 chr15 83031673 83031898 + 11.88193 NA intron (NR_004847, intron 1 of 4) intron (NR_004847, intron 1 of 4) 7944 NR_004847 100134869 Hs.735222 NR_004847 UBE2Q2P2 UBE2Q2P3|UBE2QP2 ubiquitin-conjugating enzyme E2Q family member 2 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_47883 chr7 73140190 73140297 + 11.88193 NA Intergenic Intergenic -6226 NM_004603 6804 Hs.647024 NM_004603 HPRD:01721 STX1A HPC-1|P35-1|STX1|SYN1A syntaxin 1A (brain) protein-coding 13-PTNLD9-TUMOR_peak_47739 chr7 65512487 65512686 + 11.88193 NA Intergenic L2c|LINE|L2 -28190 NM_000048 435 Hs.632015 NM_000048 HPRD:01948 ASL ASAL argininosuccinate lyase protein-coding 13-PTNLD9-TUMOR_peak_9216 chr11 17425655 17425859 + 11.88193 NA intron (NM_001287174, intron 28 of 38) L1M5|LINE|L1 -14879 NM_001166290 3767 Hs.248141 NM_000525 HPRD:09022 KCNJ11 BIR|HHF2|IKATP|KIR6.2|PHHI|TNDM3 potassium inwardly-rectifying channel, subfamily J, member 11 protein-coding 13-PTNLD9-TUMOR_peak_39678 chr4 154058454 154058583 + 11.88046 NA Intergenic Intergenic -15752 NM_001130067 23321 Hs.435711 NM_015271 HPRD:10279 TRIM2 CMT2R|RNF86 tripartite motif containing 2 protein-coding 13-PTNLD9-TUMOR_peak_34408 chr3 45187809 45187994 + 11.88046 NA promoter-TSS (NM_178181) promoter-TSS (NM_178181) 13 NM_022842 64866 Hs.476093 NM_022842 HPRD:16696 CDCP1 CD318|SIMA135|TRASK CUB domain containing protein 1 protein-coding 13-PTNLD9-TUMOR_peak_30549 chr20 19532864 19533014 + 11.88046 NA intron (NM_020689, intron 3 of 16) intron (NM_020689, intron 3 of 16) -267699 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 13-PTNLD9-TUMOR_peak_13936 chr12 116755881 116756208 + 11.88046 NA Intergenic Intergenic -41053 NM_015335 23389 Hs.603766 NM_015335 HPRD:10579 MED13L PROSIT240|THRAP2|TRAP240L mediator complex subunit 13-like protein-coding 13-PTNLD9-TUMOR_peak_14569 chr13 33859914 33860131 + 11.88046 NA promoter-TSS (NM_178006) promoter-TSS (NM_178006) -121 NM_178006 90627 Hs.156551 NM_052851 HPRD:11607 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR-related lipid transfer (START) domain containing 13 protein-coding 13-PTNLD9-TUMOR_peak_45503 chr6 74097637 74097863 + 11.88046 NA Intergenic AluSx|SINE|Alu -6535 NM_018665 55510 Hs.125507 NM_018665 HPRD:10448 DDX43 CT13|HAGE DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 protein-coding 13-PTNLD9-TUMOR_peak_39967 chr4 184651046 184651232 + 11.88046 NA Intergenic L2a|LINE|L2 70719 NM_199053 60684 Hs.443240 NM_021942 HPRD:10968 TRAPPC11 C4orf41|FOIGR|GRY|LGMD2S trafficking protein particle complex 11 protein-coding 13-PTNLD9-TUMOR_peak_40216 chr5 3531549 3531926 + 11.88046 NA intron (NR_033898, intron 2 of 4) intron (NR_033898, intron 2 of 4) 4471 NR_033898 285577 Hs.582442 NR_033898 ENSG00000248118 LINC01019 - long intergenic non-protein coding RNA 1019 ncRNA 13-PTNLD9-TUMOR_peak_19716 chr16 71166156 71166334 + 11.88046 NA intron (NM_001270974, intron 8 of 85) L1ME5|LINE|L1 98380 NM_001270974 54768 Hs.461229 NM_017558 HPRD:11042 HYDIN CILD5|HYDIN1|HYDIN2|PPP1R31 HYDIN, axonemal central pair apparatus protein protein-coding 13-PTNLD9-TUMOR_peak_26812 chr2 46557025 46557188 + 11.87952 NA intron (NM_001430, intron 1 of 15) intron (NM_001430, intron 1 of 15) 32565 NM_001430 2034 Hs.468410 NM_001430 HPRD:06787 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 13-PTNLD9-TUMOR_peak_37463 chr3 197033283 197033487 + 11.87952 NA Intergenic L1MB8|LINE|L1 -7242 NM_001290983 1739 Hs.292549 NM_004087 HPRD:03007 DLG1 DLGH1|SAP-97|SAP97|dJ1061C18.1.1|hdlg discs, large homolog 1 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_4284 chr1 166895104 166895269 + 11.87952 NA intron (NM_199351, intron 7 of 9) intron (NM_199351, intron 7 of 9) 49375 NM_199351 387597 Hs.444835 NM_199351 HPRD:12724 ILDR2 C1orf32|dJ782G3.1 immunoglobulin-like domain containing receptor 2 protein-coding 13-PTNLD9-TUMOR_peak_19837 chr16 79463456 79463756 + 11.87952 NA Intergenic Intergenic 171016 NM_005360 4094 Hs.134859 NM_005360 HPRD:01518 MAF CCA4|c-MAF v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog protein-coding 13-PTNLD9-TUMOR_peak_11457 chr11 122513193 122513537 + 11.87952 NA Intergenic Intergenic -13033 NM_032873 84959 Hs.444075 NM_032873 HPRD:16463 UBASH3B STS-1|STS1|TULA-2|p70 ubiquitin associated and SH3 domain containing B protein-coding 13-PTNLD9-TUMOR_peak_33829 chr3 13227402 13227584 + 11.87952 NA Intergenic Intergenic -112876 NM_001134382 9922 Hs.475506 NM_014869 HPRD:11052 IQSEC1 ARF-GEP100|ARFGEP100|BRAG2|GEP100 IQ motif and Sec7 domain 1 protein-coding 13-PTNLD9-TUMOR_peak_873 chr1 28921237 28921474 + 11.87952 NA TTS (NM_152304) TTS (NM_152304) 2348 NM_001193532 115273 Hs.652321 NM_152304 RAB42 - RAB42, member RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_42317 chr5 139697544 139697706 + 11.87952 NA Intergenic L2c|LINE|L2 -14936 NM_002622 5201 Hs.483564 NM_002622 HPRD:05357 PFDN1 PDF|PFD1 prefoldin subunit 1 protein-coding 13-PTNLD9-TUMOR_peak_6129 chr1 244941772 244941931 + 11.87952 NA Intergenic Intergenic -56788 NM_198076 116228 Hs.411490 NM_198076 HPRD:13307 COX20 FAM36A COX20 cytochrome C oxidase assembly factor protein-coding 13-PTNLD9-TUMOR_peak_29625 chr2 205530121 205530308 + 11.87952 NA intron (NM_205863, intron 1 of 21) intron (NM_205863, intron 1 of 21) 119698 NM_057177 117583 Hs.657382 NM_057177 HPRD:09795 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3LC|PAR3beta|Par3Lb par-3 family cell polarity regulator beta protein-coding 13-PTNLD9-TUMOR_peak_35455 chr3 115509703 115509862 + 11.87861 NA Intergenic Intergenic 167631 NM_001130064 2596 Hs.134974 NM_002045 HPRD:01198 GAP43 B-50|PP46 growth associated protein 43 protein-coding 13-PTNLD9-TUMOR_peak_18920 chr16 29280223 29280406 + 11.87403 NA Intergenic MLT1B|LTR|ERVL-MaLR -33294 NR_002939 440352 Hs.658149 NR_002939 SNX29P2 RUNDC2C sorting nexin 29 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_49836 chr7 157130110 157130271 + 11.87103 NA intron (NM_058246, intron 1 of 9) CpG 479 NM_058246 10049 Hs.490745 NM_005494 HPRD:07107 DNAJB6 DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|MRJ|MSJ-1 DnaJ (Hsp40) homolog, subfamily B, member 6 protein-coding 13-PTNLD9-TUMOR_peak_9465 chr11 33711880 33712323 + 11.85851 NA Intergenic LTR44|LTR|ERV1 10185 NM_001166692 100131378 Hs.709466 NM_001166692 C11orf91 - chromosome 11 open reading frame 91 protein-coding 13-PTNLD9-TUMOR_peak_23272 chr18 55474143 55474409 + 11.85851 NA Intergenic Intergenic -3949 NM_005603 5205 Hs.216623 NM_005603 HPRD:03867 ATP8B1 ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1 ATPase, aminophospholipid transporter, class I, type 8B, member 1 protein-coding 13-PTNLD9-TUMOR_peak_50931 chr8 53625761 53625908 + 11.85615 NA intron (NM_001083617, intron 1 of 23) intron (NM_001083617, intron 1 of 23) 1192 NM_001083617 9821 Hs.196102 NM_014781 HPRD:06019 RB1CC1 ATG17|CC1|FIP200|PPP1R131 RB1-inducible coiled-coil 1 protein-coding 13-PTNLD9-TUMOR_peak_18515 chr16 11405625 11405796 + 11.85615 NA Intergenic AluJr|SINE|Alu -30518 NM_002761 5619 Hs.2909 NM_002761 HPRD:01688 PRM1 CT94.1|P1 protamine 1 protein-coding 13-PTNLD9-TUMOR_peak_20165 chr16 90015026 90015227 + 11.85240 NA promoter-TSS (NM_001242821) promoter-TSS (NM_001242821) -13 NM_001242816 54849 Hs.62771 NM_017702 HPRD:07882 DEF8 - differentially expressed in FDCP 8 homolog (mouse) protein-coding 13-PTNLD9-TUMOR_peak_42288 chr5 139107325 139107498 + 11.85240 NA Intergenic AluJb|SINE|Alu 18397 NR_105052 101929696 Hs.147408 NR_105052 ENSG00000249131 LOC101929696 - uncharacterized LOC101929696 ncRNA 13-PTNLD9-TUMOR_peak_40751 chr5 43484372 43484554 + 11.85240 NA promoter-TSS (NM_022483) promoter-TSS (NM_022483) -471 NM_022483 64417 Hs.732093 NM_022483 HPRD:07965 C5orf28 - chromosome 5 open reading frame 28 protein-coding 13-PTNLD9-TUMOR_peak_46924 chr7 16385983 16386488 + 11.85240 NA intron (NM_001101417, intron 2 of 8) intron (NM_001101417, intron 2 of 8) 74712 NM_001101426 729920 Hs.636502 NM_001101417 ISPD MDDGA7|Nip|hCG_1745121 isoprenoid synthase domain containing protein-coding 13-PTNLD9-TUMOR_peak_31425 chr20 48884171 48884414 + 11.85240 NA intron (NM_001278655, intron 1 of 3) intron (NM_001278655, intron 1 of 3) 269 NM_001278655 100506115 Hs.235484 NM_001278655 LINC01272 - long intergenic non-protein coding RNA 1272 protein-coding 13-PTNLD9-TUMOR_peak_17100 chr15 41138204 41138337 + 11.85240 NA intron (NM_001032367, intron 1 of 9) intron (NM_001032367, intron 1 of 9) 1627 NM_001032367 6692 Hs.233950 NM_003710 HPRD:05494 SPINT1 HAI|HAI1|MANSC2 serine peptidase inhibitor, Kunitz type 1 protein-coding 13-PTNLD9-TUMOR_peak_5592 chr1 224752972 224753192 + 11.85048 NA Intergenic Intergenic -51097 NM_152495 149111 Hs.731723 NM_152495 HPRD:08799 CNIH3 CNIH-3 cornichon family AMPA receptor auxiliary protein 3 protein-coding 13-PTNLD9-TUMOR_peak_34784 chr3 58594434 58594703 + 11.85048 NA intron (NM_001282714, intron 1 of 4) intron (NM_001282714, intron 1 of 4) 18769 NM_001282714 11170 Hs.506357 NM_007177 HPRD:09753 FAM107A DRR1|TU3A family with sequence similarity 107, member A protein-coding 13-PTNLD9-TUMOR_peak_40407 chr5 15585322 15585552 + 11.85048 NA intron (NM_001278317, intron 1 of 3) intron (NM_001278317, intron 1 of 3) 29674 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 13-PTNLD9-TUMOR_peak_43896 chr6 14733015 14733229 + 11.85048 NA Intergenic Intergenic -447437 NR_108096 102216342 Hs.563409 NR_108096 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 13-PTNLD9-TUMOR_peak_13893 chr12 113059107 113059236 + 11.85048 NA Intergenic L1PA2|LINE|L1 -170378 NM_014954 22895 Hs.21239 NM_014954 HPRD:15273 RPH3A - rabphilin 3A protein-coding 13-PTNLD9-TUMOR_peak_51998 chr8 128872068 128872362 + 11.85048 NA Intergenic Intergenic -30659 NR_003367 5820 Hs.133107 NR_003367 ENSG00000249859 PVT1 LINC00079|NCRNA00079 Pvt1 oncogene (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_27898 chr2 103531663 103531846 + 11.85048 NA Intergenic Intergenic 153264 NM_144632 130827 Hs.436203 NM_144632 HPRD:08698 TMEM182 - transmembrane protein 182 protein-coding 13-PTNLD9-TUMOR_peak_31777 chr20 61200352 61200691 + 11.84628 NA Intergenic Intergenic 38402 NR_029676 406923 NR_029676 MIR133A2 MIRN133A2 microRNA 133a-2 ncRNA 13-PTNLD9-TUMOR_peak_24456 chr19 19488692 19488903 + 11.84377 NA Intergenic Intergenic -7845 NM_017660 54815 Hs.118964 NM_017660 HPRD:11741 GATAD2A p66alpha GATA zinc finger domain containing 2A protein-coding 13-PTNLD9-TUMOR_peak_26373 chr2 26947115 26947276 + 11.84377 NA intron (NM_002246, intron 1 of 1) intron (NM_002246, intron 1 of 1) 31614 NM_002246 3777 Hs.645288 NM_002246 KCNK3 K2p3.1|OAT1|PPH4|TASK|TASK-1|TBAK1 potassium channel, subfamily K, member 3 protein-coding 13-PTNLD9-TUMOR_peak_22583 chr18 10413102 10413240 + 11.84377 NA non-coding (NR_110775, exon 1 of 3) non-coding (NR_110775, exon 1 of 3) 1196 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 13-PTNLD9-TUMOR_peak_18754 chr16 22309103 22309243 + 11.84012 NA intron (NM_001258035, intron 1 of 19) CpG 477 NM_001258035 55718 Hs.460298 NM_018119 HPRD:15155 POLR3E RPC5|SIN polymerase (RNA) III (DNA directed) polypeptide E (80kD) protein-coding 13-PTNLD9-TUMOR_peak_48525 chr7 100182495 100182684 + 11.83302 NA intron (NM_002319, intron 1 of 17) intron (NM_002319, intron 1 of 17) 1222 NM_002319 4034 Hs.125742 NM_002319 HPRD:10062 LRCH4 LRN|LRRN1|LRRN4|PP14183 leucine-rich repeats and calponin homology (CH) domain containing 4 protein-coding 13-PTNLD9-TUMOR_peak_22177 chr17 76642040 76642281 + 11.83292 NA Intergenic Intergenic -14021 NR_110849 101928710 Hs.464224 NR_110848 ENSG00000267123 LOC101928710 - uncharacterized LOC101928710 ncRNA 13-PTNLD9-TUMOR_peak_45026 chr6 42259863 42260022 + 11.83292 NA intron (NM_033502, intron 4 of 17) intron (NM_033502, intron 4 of 17) -74309 NM_018141 55173 Hs.380887 NM_018141 HPRD:14775 MRPS10 MRP-S10|PNAS-122 mitochondrial ribosomal protein S10 protein-coding 13-PTNLD9-TUMOR_peak_23491 chr18 74695179 74695409 + 11.83292 NA intron (NM_001025101, intron 8 of 8) intron (NM_001025101, intron 8 of 8) 33761 NM_002385 4155 Hs.551713 NM_002385 HPRD:01158 MBP - myelin basic protein protein-coding 13-PTNLD9-TUMOR_peak_43108 chr5 173959604 173959822 + 11.83292 NA Intergenic Intergenic -191862 NM_002449 4488 Hs.89404 NM_002449 HPRD:00421 MSX2 CRS2|FPP|HOX8|MSH|PFM|PFM1 msh homeobox 2 protein-coding 13-PTNLD9-TUMOR_peak_21479 chr17 48739215 48739609 + 11.83292 NA intron (NM_001144070, intron 8 of 11) intron (NM_001144070, intron 8 of 11) 27194 NM_003786 8714 Hs.463421 NM_003786 HPRD:06826 ABCC3 ABC31|EST90757|MLP2|MOAT-D|MRP3|cMOAT2 ATP-binding cassette, sub-family C (CFTR/MRP), member 3 protein-coding 13-PTNLD9-TUMOR_peak_30180 chr2 241195473 241195683 + 11.83292 NA Intergenic Intergenic -115505 NM_148961 150677 Hs.148586 NM_148961 HPRD:09714 OTOS OTOSP otospiralin protein-coding 13-PTNLD9-TUMOR_peak_33774 chr3 11540663 11540912 + 11.83292 NA intron (NM_001136031, intron 17 of 17) MER119|DNA|hAT-Charlie 69611 NM_001128221 9686 Hs.740389 NM_014667 HPRD:11672 VGLL4 VGL-4 vestigial-like family member 4 protein-coding 13-PTNLD9-TUMOR_peak_6930 chr10 35178447 35178654 + 11.83292 NA Intergenic LTR3B_|LTR|ERVK 73854 NR_108043 100505601 Hs.549790 NR_108043 PARD3-AS1 - PARD3 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_25336 chr19 49339103 49339279 + 11.83292 NA intron (NM_016246, intron 1 of 8) intron (NM_016246, intron 1 of 8) 743 NM_016246 51171 Hs.18788 NM_016246 HPRD:16801 HSD17B14 DHRS10|SDR47C1|retSDR3 hydroxysteroid (17-beta) dehydrogenase 14 protein-coding 13-PTNLD9-TUMOR_peak_54199 chr9 101469516 101469705 + 11.83292 NA intron (NM_005458, intron 1 of 18) CpG 1869 NM_005458 9568 Hs.198612 NM_005458 HPRD:09552 GABBR2 GABABR2|GPR51|GPRC3B|HG20|HRIHFB2099 gamma-aminobutyric acid (GABA) B receptor, 2 protein-coding 13-PTNLD9-TUMOR_peak_48673 chr7 102786626 102786857 + 11.82980 NA intron (NM_198990, intron 1 of 5) AluSx|SINE|Alu 2828 NM_198990 222236 Hs.324271 NM_198990 HPRD:14809 NAPEPLD FMP30|NAPE-PLD N-acyl phosphatidylethanolamine phospholipase D protein-coding 13-PTNLD9-TUMOR_peak_4346 chr1 168606011 168606289 + 11.82953 NA Intergenic MER65C|LTR|ERV1 60439 NM_002995 6375 Hs.546295 NM_002995 HPRD:02595 XCL1 ATAC|LPTN|LTN|SCM-1|SCM-1a|SCM1|SCM1A|SCYC1 chemokine (C motif) ligand 1 protein-coding 13-PTNLD9-TUMOR_peak_36757 chr3 172391058 172391165 + 11.82953 NA intron (NM_020792, intron 1 of 4) HUERS-P3b-int|LTR|ERV1 37897 NM_001146278 57552 Hs.444099 NM_020792 HPRD:07489 NCEH1 AADACL1|NCEH neutral cholesterol ester hydrolase 1 protein-coding 13-PTNLD9-TUMOR_peak_8940 chr11 7505929 7506108 + 11.82953 NA promoter-TSS (NM_198474) promoter-TSS (NM_198474) -582 NM_198474 283298 Hs.503500 NM_198474 HPRD:17661 OLFML1 UNQ564 olfactomedin-like 1 protein-coding 13-PTNLD9-TUMOR_peak_21401 chr17 47633803 47633940 + 11.82953 NA intron (NR_103773, intron 1 of 2) CpG 17555 NR_103773 100288866 Hs.720309 NR_103773 ENSG00000249906 LOC100288866 - uncharacterized LOC100288866 ncRNA 13-PTNLD9-TUMOR_peak_12198 chr12 13288774 13289054 + 11.82953 NA Intergenic Intergenic -32284 NM_001206842 83445 Hs.240053 NM_031289 HPRD:11015 GSG1 - germ cell associated 1 protein-coding 13-PTNLD9-TUMOR_peak_30614 chr20 23426337 23426478 + 11.82953 NA TTS (NM_138283) TTS (NM_138283) 6085 NM_138283 128817 Hs.352134 NM_138283 HPRD:16770 CSTL1 CTES1|RCET11|dJ322G13.4 cystatin-like 1 protein-coding 13-PTNLD9-TUMOR_peak_1520 chr1 44506589 44506707 + 11.82953 NA Intergenic Charlie1|DNA|hAT-Charlie -9484 NM_001024845 6536 Hs.442590 NM_006934 HPRD:03010 SLC6A9 GLYT1 solute carrier family 6 (neurotransmitter transporter, glycine), member 9 protein-coding 13-PTNLD9-TUMOR_peak_16269 chr14 75152955 75153073 + 11.82953 NA intron (NM_001039479, intron 2 of 19) intron (NM_001039479, intron 2 of 19) 26793 NM_001039479 9870 Hs.497417 NM_014821 HPRD:13794 AREL1 KIAA0317 apoptosis resistant E3 ubiquitin protein ligase 1 protein-coding 13-PTNLD9-TUMOR_peak_11757 chr12 291885 292022 + 11.82953 NA Intergenic Intergenic -20858 NR_120475 101929384 Hs.569138 NR_120475 LOC101929384 - uncharacterized LOC101929384 ncRNA 13-PTNLD9-TUMOR_peak_34981 chr3 73022474 73022751 + 11.82953 NA intron (NM_001080393, intron 6 of 6) L2a|LINE|L2 -23507 NM_174907 151987 Hs.431092 NM_174907 HPRD:11453 PPP4R2 PP4R2 protein phosphatase 4, regulatory subunit 2 protein-coding 13-PTNLD9-TUMOR_peak_4238 chr1 165019583 165019722 + 11.82953 NA Intergenic L2|LINE|L2 -275774 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 13-PTNLD9-TUMOR_peak_10869 chr11 88269170 88269342 + 11.82953 NA intron (NM_001143831, intron 7 of 8) intron (NM_001143831, intron 7 of 8) 31512 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_4796 chr1 186970651 186971059 + 11.82953 NA Intergenic Intergenic 172823 NM_024420 5321 Hs.497200 NM_024420 HPRD:08986 PLA2G4A PLA2G4|cPLA2-alpha phospholipase A2, group IVA (cytosolic, calcium-dependent) protein-coding 13-PTNLD9-TUMOR_peak_52031 chr8 129567049 129567390 + 11.82953 NA intron (NR_121672, intron 2 of 7) intron (NR_121672, intron 2 of 7) 9706 NR_121672 101927774 Hs.628730 NR_121672 ENSG00000254275 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 13-PTNLD9-TUMOR_peak_35369 chr3 112077416 112077544 + 11.82953 NA intron (NM_001004196, intron 6 of 6) intron (NM_001004196, intron 6 of 6) 25564 NM_005944 4345 Hs.79015 NM_005944 ENSG00000091972 CD200 MOX1|MOX2|MRC|OX-2 CD200 molecule protein-coding 13-PTNLD9-TUMOR_peak_11594 chr11 128337528 128337776 + 11.82953 NA intron (NM_001143820, intron 8 of 9) intron (NM_001143820, intron 8 of 9) 54553 NM_005238 2113 Hs.369438 NM_005238 HPRD:01260 ETS1 ETS-1|EWSR2|p54 v-ets avian erythroblastosis virus E26 oncogene homolog 1 protein-coding 13-PTNLD9-TUMOR_peak_17721 chr15 78112595 78112808 + 11.82953 NA promoter-TSS (NM_001301191) promoter-TSS (NM_001301191) -27 NM_001301187 84894 Hs.656765 NM_032808 HPRD:14322 LINGO1 LERN1|LRRN6A|UNQ201 leucine rich repeat and Ig domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_26866 chr2 47550305 47550479 + 11.82953 NA intron (NR_110207, intron 1 of 2) intron (NR_110207, intron 1 of 2) 21821 NR_110207 101927043 Hs.515976 NR_110207 ENSG00000234690 LOC101927043 - uncharacterized LOC101927043 ncRNA 13-PTNLD9-TUMOR_peak_326 chr1 9360307 9360473 + 11.82953 NA intron (NM_025106, intron 1 of 2) ERVL-B4-int|LTR|ERVL 7449 NM_025106 80176 Hs.8261 NM_025106 HPRD:18106 SPSB1 SSB-1|SSB1 splA/ryanodine receptor domain and SOCS box containing 1 protein-coding 13-PTNLD9-TUMOR_peak_43832 chr6 13012609 13012822 + 11.82344 NA intron (NM_030948, intron 4 of 14) intron (NM_030948, intron 4 of 14) 283103 NM_001242698 100130357 Hs.657498 NM_001242698 LOC100130357 - uncharacterized LOC100130357 protein-coding 13-PTNLD9-TUMOR_peak_13833 chr12 110939204 110939333 + 11.82344 NA promoter-TSS (NM_001286532) promoter-TSS (NM_001286532) 677 NR_104099 51699 Hs.600114 NM_016226 HPRD:09499 VPS29 DC15|PEP11 vacuolar protein sorting 29 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_36760 chr3 172467151 172467287 + 11.81541 NA Intergenic Intergenic -1256 NM_001258316 1894 Hs.518299 NM_018098 HPRD:11860 ECT2 ARHGEF31 epithelial cell transforming 2 protein-coding 13-PTNLD9-TUMOR_peak_10695 chr11 76481746 76482202 + 11.81044 NA Intergenic Intergenic -11383 NM_001258210 25987 Hs.8361 NM_015516 HPRD:12152 TSKU E2IG4|LRRC54|TSK tsukushi, small leucine rich proteoglycan protein-coding 13-PTNLD9-TUMOR_peak_17589 chr15 71586980 71587179 + 11.81044 NA intron (NM_024817, intron 5 of 16) intron (NM_024817, intron 5 of 16) -105681 NR_120350 101929196 Hs.680472 NR_120348 LOC101929196 - uncharacterized LOC101929196 ncRNA 13-PTNLD9-TUMOR_peak_54301 chr9 107755942 107756187 + 11.81044 NA Intergenic Intergenic -65537 NM_005502 19 Hs.659274 NM_005502 HPRD:02501 ABCA1 ABC-1|ABC1|CERP|HDLDT1|TGD ATP-binding cassette, sub-family A (ABC1), member 1 protein-coding 13-PTNLD9-TUMOR_peak_36593 chr3 160168797 160168963 + 11.81044 NA Intergenic LTR24|LTR|ERV1 -1254 NM_173084 286827 Hs.212957 NM_173084 HPRD:15568 TRIM59 MRF1|RNF104|TRIM57|TSBF1 tripartite motif containing 59 protein-coding 13-PTNLD9-TUMOR_peak_36756 chr3 172384669 172384872 + 11.80922 NA intron (NM_020792, intron 1 of 4) HUERS-P3b-int|LTR|ERV1 44238 NM_001146278 57552 Hs.444099 NM_020792 HPRD:07489 NCEH1 AADACL1|NCEH neutral cholesterol ester hydrolase 1 protein-coding 13-PTNLD9-TUMOR_peak_11774 chr12 679693 679877 + 11.80922 NA intron (NM_016533, intron 1 of 3) intron (NM_016533, intron 1 of 3) 39794 NM_001294345 4815 Hs.655804 NM_016533 HPRD:09530 NINJ2 - ninjurin 2 protein-coding 13-PTNLD9-TUMOR_peak_37258 chr3 192597172 192597468 + 11.80922 NA intron (NM_178496, intron 1 of 1) intron (NM_178496, intron 1 of 1) 38630 NM_178496 151963 Hs.151443 NM_178496 HPRD:14092 MB21D2 C3orf59 Mab-21 domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_53596 chr9 73169023 73169529 + 11.80525 NA intron (NM_001007471, intron 21 of 24) intron (NM_001007471, intron 21 of 24) -139703 NM_001206 687 Hs.150557 NM_001206 HPRD:04211 KLF9 BTEB|BTEB1 Kruppel-like factor 9 protein-coding 13-PTNLD9-TUMOR_peak_25715 chr19 56117640 56117883 + 11.80525 NA Intergenic Intergenic 6031 NM_153219 147807 Hs.440291 NM_153219 HPRD:15817 ZNF524 - zinc finger protein 524 protein-coding 13-PTNLD9-TUMOR_peak_36043 chr3 135789331 135789472 + 11.80525 NA intron (NM_181897, intron 5 of 12) intron (NM_181897, intron 5 of 12) 47824 NM_181897 5523 Hs.518155 NM_002718 HPRD:09225 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2, regulatory subunit B'', alpha protein-coding 13-PTNLD9-TUMOR_peak_44225 chr6 26243479 26243647 + 11.80525 NA Intergenic Intergenic 2909 NM_003540 8361 Hs.247816 NM_003540 HIST1H4F H4|H4/c|H4FC histone cluster 1, H4f protein-coding 13-PTNLD9-TUMOR_peak_43583 chr6 4321189 4321384 + 11.80525 NA Intergenic Intergenic 184980 NR_103764 100507506 Hs.665936 NR_103764 ENSG00000234817 LOC100507506 - uncharacterized LOC100507506 ncRNA 13-PTNLD9-TUMOR_peak_41104 chr5 67066334 67066737 + 11.80525 NA Intergenic Intergenic -419169 NR_105003 102467655 Hs.544102 NR_105003 LOC102467655 - uncharacterized LOC102467655 ncRNA 13-PTNLD9-TUMOR_peak_586 chr1 19401414 19402167 + 11.80525 NA intron (NM_020765, intron 105 of 105) intron (NM_020765, intron 105 of 105) -118964 NM_001136265 126917 Hs.466625 NM_001136265 ENSG00000169991 IFFO2 - intermediate filament family orphan 2 protein-coding 13-PTNLD9-TUMOR_peak_34578 chr3 50126261 50126400 + 11.80525 NA promoter-TSS (NM_005778) promoter-TSS (NM_005778) -11 NM_005778 10181 Hs.439480 NM_005778 HPRD:06052 RBM5 G15|LUCA15|RMB5 RNA binding motif protein 5 protein-coding 13-PTNLD9-TUMOR_peak_52088 chr8 131533431 131533755 + 11.80525 NA Intergenic Intergenic -77687 NM_018482 50807 Hs.655552 NM_018482 HPRD:05809 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 13-PTNLD9-TUMOR_peak_34539 chr3 49415654 49416213 + 11.80525 NA intron (NM_001664, intron 1 of 4) AluJb|SINE|Alu -20142 NM_000581 2876 Hs.76686 NM_000581 HPRD:11749 GPX1 GPXD|GSHPX1 glutathione peroxidase 1 protein-coding 13-PTNLD9-TUMOR_peak_10439 chr11 69069195 69069658 + 11.79589 NA Intergenic Intergenic 7821 NM_001300924 26579 Hs.523848 NM_138768 HPRD:16130 MYEOV OCIM myeloma overexpressed protein-coding 13-PTNLD9-TUMOR_peak_38832 chr4 88029295 88029443 + 11.79354 NA exon (NM_005935, exon 10 of 20) exon (NM_005935, exon 10 of 20) 101216 NM_005935 4299 Hs.480190 NM_005935 HPRD:08871 AFF1 AF4|MLLT2|PBM1 AF4/FMR2 family, member 1 protein-coding 13-PTNLD9-TUMOR_peak_39491 chr4 142297135 142297327 + 11.79354 NA Intergenic L1PA16|LINE|L1 -43460 NR_121625 100507639 Hs.535010 NR_121625 ENSG00000248810 LOC100507639 - uncharacterized LOC100507639 ncRNA 13-PTNLD9-TUMOR_peak_42722 chr5 153498446 153498668 + 11.79354 NA Intergenic MIRb|SINE|MIR -71738 NM_198321 55568 Hs.631797 NM_017540 HPRD:12157 GALNT10 GALNACT10|PPGALNACT10|PPGANTASE10 polypeptide N-acetylgalactosaminyltransferase 10 protein-coding 13-PTNLD9-TUMOR_peak_9497 chr11 34272727 34272908 + 11.79354 NA intron (NM_145804, intron 1 of 16) intron (NM_145804, intron 1 of 16) 106738 NM_145804 25841 Hs.23361 NM_145804 HPRD:10624 ABTB2 ABTB2A|BTBD22 ankyrin repeat and BTB (POZ) domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_10642 chr11 75091777 75091911 + 11.79354 NA Intergenic Intergenic -18691 NM_001260506 6188 Hs.546286 NM_001005 HPRD:10941 RPS3 S3 ribosomal protein S3 protein-coding 13-PTNLD9-TUMOR_peak_46737 chr7 3256791 3257015 + 11.79354 NA Intergenic Intergenic -84177 NM_152744 221935 Hs.653013 NM_152744 HPRD:07388 SDK1 - sidekick cell adhesion molecule 1 protein-coding 13-PTNLD9-TUMOR_peak_25183 chr19 46774931 46775306 + 11.79354 NA intron (NR_046936, intron 3 of 3) ERV3-16A3_LTR|LTR|ERVL -25185 NM_152795 64344 Hs.420830 NM_022462 HPRD:17104 HIF3A HIF-3A|IPAS|MOP7|PASD7|bHLHe17 hypoxia inducible factor 3, alpha subunit protein-coding 13-PTNLD9-TUMOR_peak_21774 chr17 62703369 62703629 + 11.79354 NA Intergenic Intergenic -45113 NM_022739 64750 Hs.515011 NM_022739 SMURF2 - SMAD specific E3 ubiquitin protein ligase 2 protein-coding 13-PTNLD9-TUMOR_peak_30989 chr20 36904375 36904497 + 11.79354 NA intron (NR_104170, intron 1 of 1) Tigger3b|DNA|TcMar-Tigger -15262 NM_001029864 85449 Hs.472690 NM_001029864 ENSG00000149633 KIAA1755 - KIAA1755 protein-coding 13-PTNLD9-TUMOR_peak_29184 chr2 177477591 177477727 + 11.79354 NA Intergenic Intergenic -11879 NR_031648 100302142 NR_031648 MIR1246 MIRN1246|hsa-mir-1246 microRNA 1246 ncRNA 13-PTNLD9-TUMOR_peak_27251 chr2 72110202 72110371 + 11.79354 NA Intergenic Intergenic 264705 NM_001277742 56603 Hs.91546 NM_019885 HPRD:05550 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450, family 26, subfamily B, polypeptide 1 protein-coding 13-PTNLD9-TUMOR_peak_17887 chr15 85535875 85536007 + 11.79354 NA intron (NM_173454, intron 1 of 20) intron (NM_173454, intron 1 of 20) 10736 NM_173454 5151 Hs.9333 NM_002605 HPRD:09114 PDE8A HsT19550 phosphodiesterase 8A protein-coding 13-PTNLD9-TUMOR_peak_38087 chr4 22636229 22636378 + 11.79354 NA Intergenic LTR12E|LTR|ERV1 -58234 NR_102355 57733 Hs.653107 NM_020973 HPRD:09428 GBA3 CBG|CBGL1|GLUC|KLRP glucosidase, beta, acid 3 protein-coding 13-PTNLD9-TUMOR_peak_37754 chr4 5865313 5865560 + 11.79354 NA intron (NM_001014809, intron 2 of 13) intron (NM_001014809, intron 2 of 13) 24104 NM_001288662 1400 Hs.135270 NM_001313 HPRD:03913 CRMP1 CRMP-1|DPYSL1|DRP-1|DRP1|ULIP-3 collapsin response mediator protein 1 protein-coding 13-PTNLD9-TUMOR_peak_7941 chr10 88704312 88704514 + 11.79354 NA intron (NM_024756, intron 4 of 6) MER117|DNA|hAT-Charlie 13012 NM_024756 79812 Hs.524479 NM_024756 HPRD:10601 MMRN2 EMILIN-3|EMILIN3|ENDOGLYX-1 multimerin 2 protein-coding 13-PTNLD9-TUMOR_peak_12477 chr12 32832428 32832713 + 11.79022 NA intron (NM_001278463, intron 1 of 18) CpG 436 NM_001278466 10059 Hs.556296 NM_005690 HPRD:04833 DNM1L DLP1|DRP1|DVLP|DYMPLE|EMPF|HDYNIV dynamin 1-like protein-coding 13-PTNLD9-TUMOR_peak_49823 chr7 156735371 156735678 + 11.79022 NA Intergenic CpG -6893 NM_138400 64434 Hs.15825 NM_138400 HPRD:18485 NOM1 C7orf3|PPP1R113|SGD1 nucleolar protein with MIF4G domain 1 protein-coding 13-PTNLD9-TUMOR_peak_1594 chr1 46056088 46056268 + 11.79022 NA intron (NM_001195193, intron 1 of 12) AluY|SINE|Alu 6518 NM_002482 4678 Hs.319334 NM_002482 HPRD:04423 NASP FLB7527|PRO1999 nuclear autoantigenic sperm protein (histone-binding) protein-coding 13-PTNLD9-TUMOR_peak_15541 chr14 35182980 35183242 + 11.79022 NA promoter-TSS (NM_021914) promoter-TSS (NM_021914) -88 NM_021914 1073 Hs.180141 NM_021914 HPRD:03262 CFL2 NEM7 cofilin 2 (muscle) protein-coding 13-PTNLD9-TUMOR_peak_37315 chr3 194206249 194206523 + 11.78864 NA Intergenic Intergenic -1483 NR_033929 401106 Hs.407087 NR_033929 LINC00884 - long intergenic non-protein coding RNA 884 ncRNA 13-PTNLD9-TUMOR_peak_26503 chr2 31094898 31095208 + 11.78710 NA Intergenic MSTB1|LTR|ERVL-MaLR -64742 NM_144575 92291 Hs.660911 NM_144575 HPRD:07008 CAPN13 - calpain 13 protein-coding 13-PTNLD9-TUMOR_peak_11754 chr12 253911 254065 + 11.78710 NA intron (NR_033859, intron 1 of 9) intron (NR_033859, intron 1 of 9) 4344 NR_033859 574538 Hs.589138 NR_033859 ENSG00000249695 LOC574538 - uncharacterized LOC574538 ncRNA 13-PTNLD9-TUMOR_peak_42820 chr5 158768903 158769091 + 11.78710 NA intron (NR_037889, intron 2 of 4) intron (NR_037889, intron 2 of 4) 10471 NR_037889 285626 Hs.449275 NR_037889 ENSG00000249738 LOC285626 - uncharacterized LOC285626 ncRNA 13-PTNLD9-TUMOR_peak_53872 chr9 89734283 89734465 + 11.78710 NA Intergenic Intergenic -29185 NM_001001709 401535 Hs.657740 NM_001001709 HPRD:16988 C9orf170 - chromosome 9 open reading frame 170 protein-coding 13-PTNLD9-TUMOR_peak_51485 chr8 103770825 103771029 + 11.78518 NA Intergenic Intergenic -102797 NM_005655 7071 Hs.435001 NM_005655 HPRD:03527 KLF10 EGR-alpha|EGRA|TIEG|TIEG1 Kruppel-like factor 10 protein-coding 13-PTNLD9-TUMOR_peak_39371 chr4 135465447 135465816 + 11.77842 NA Intergenic Intergenic -342728 NM_001114734 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein, cytoplasmic 4-like protein-coding 13-PTNLD9-TUMOR_peak_48183 chr7 83306515 83306678 + 11.77842 NA Intergenic Intergenic -28117 NM_012431 9723 Hs.528721 NM_012431 HPRD:11545 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E protein-coding 13-PTNLD9-TUMOR_peak_52566 chr8 146300654 146301076 + 11.77842 NA Intergenic L1PA6|LINE|L1 23041 NM_023080 65265 Hs.169615 NM_023080 HPRD:07951 C8orf33 - chromosome 8 open reading frame 33 protein-coding 13-PTNLD9-TUMOR_peak_37089 chr3 186717765 186717993 + 11.77842 NA intron (NM_173216, intron 2 of 7) AluJr|SINE|Alu -21786 NM_003032 6480 Hs.207459 NM_003032 HPRD:00184 ST6GAL1 SIAT1|ST6GalI|ST6N ST6 beta-galactosamide alpha-2,6-sialyltranferase 1 protein-coding 13-PTNLD9-TUMOR_peak_30154 chr2 240186914 240187214 + 11.77842 NA intron (NM_006037, intron 2 of 26) intron (NM_006037, intron 2 of 26) -40093 NR_036229 100423043 NR_036229 miRBase:MI0015875 MIR4269 - microRNA 4269 ncRNA 13-PTNLD9-TUMOR_peak_8601 chr10 129721283 129721714 + 11.77842 NA intron (NM_006504, intron 1 of 20) intron (NM_006504, intron 1 of 20) 16173 NM_006504 5791 Hs.127022 NM_006504 HPRD:02956 PTPRE HPTPE|PTPE|R-PTP-EPSILON protein tyrosine phosphatase, receptor type, E protein-coding 13-PTNLD9-TUMOR_peak_9690 chr11 46318554 46318675 + 11.77842 NA intron (NM_052854, intron 1 of 11) intron (NM_052854, intron 1 of 11) 19425 NM_052854 90993 Hs.405961 NM_052854 HPRD:16751 CREB3L1 OASIS cAMP responsive element binding protein 3-like 1 protein-coding 13-PTNLD9-TUMOR_peak_14300 chr12 129308474 129308677 + 11.77842 NA promoter-TSS (NM_145648) promoter-TSS (NM_145648) -34 NM_145648 121260 Hs.507260 NM_145648 ENSG00000139370 SLC15A4 PHT1|PTR4 solute carrier family 15 (oligopeptide transporter), member 4 protein-coding 13-PTNLD9-TUMOR_peak_33748 chr3 10814221 10814392 + 11.77842 NA Intergenic Intergenic -8429 NR_027102 285370 Hs.157613 NR_027102 ENSG00000226567 LINC00606 - long intergenic non-protein coding RNA 606 ncRNA 13-PTNLD9-TUMOR_peak_4406 chr1 172386761 172386971 + 11.77842 NA Intergenic Intergenic -2962 NM_139240 92346 Hs.517991 NM_139240 HPRD:14291 C1orf105 - chromosome 1 open reading frame 105 protein-coding 13-PTNLD9-TUMOR_peak_20321 chr17 4813250 4813412 + 11.77842 NA Intergenic Intergenic -6962 NM_000080 1145 Hs.654535 NM_000080 HPRD:00008 CHRNE ACHRE|CMS1D|CMS1E|CMS2A|FCCMS|SCCMS cholinergic receptor, nicotinic, epsilon (muscle) protein-coding 13-PTNLD9-TUMOR_peak_43608 chr6 5112763 5113050 + 11.77842 NA intron (NR_104418, intron 1 of 1) L2b|LINE|L2 27186 NM_001145115 648791 Hs.653089 NM_001145115 ENSG00000219607 PPP1R3G - protein phosphatase 1, regulatory subunit 3G protein-coding 13-PTNLD9-TUMOR_peak_12221 chr12 14413613 14413919 + 11.77842 NA Intergenic Intergenic -104800 NM_018179 55729 Hs.504856 NM_018179 HPRD:09811 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 13-PTNLD9-TUMOR_peak_39446 chr4 140894176 140894364 + 11.77842 NA intron (NM_018717, intron 1 of 5) intron (NM_018717, intron 1 of 5) 180963 NM_018717 55534 Hs.586165 NM_018717 HPRD:10066 MAML3 CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3 mastermind-like 3 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_45108 chr6 43799075 43799223 + 11.77842 NA Intergenic L2b|LINE|L2 59427 NM_001287044 7422 Hs.73793 NM_003376 HPRD:01889 VEGFA MVCD1|VEGF|VPF vascular endothelial growth factor A protein-coding 13-PTNLD9-TUMOR_peak_46923 chr7 16308673 16308871 + 11.77842 NA non-coding (NR_038946, exon 5 of 5) non-coding (NR_038946, exon 5 of 5) 58661 NR_038947 100506025 Hs.649029 NR_038946 ENSG00000229688 ISPD-AS1 - ISPD antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_46434 chr6 159268109 159268433 + 11.77842 NA intron (NR_028496, intron 2 of 2) MLT1B|LTR|ERVL-MaLR 10393 NR_028496 202459 Hs.487035 NM_145303 HPRD:14130 OSTCP1 DC2L|OSTCL oligosaccharyltransferase complex subunit pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_32453 chr21 44360354 44360491 + 11.77842 NA Intergenic Intergenic -34198 NM_001286258 5316 Hs.431043 NM_004571 HPRD:03653 PKNOX1 PREP1|pkonx1c PBX/knotted 1 homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_26207 chr2 16824462 16824670 + 11.77842 NA intron (NM_030797, intron 1 of 11) intron (NM_030797, intron 1 of 11) 22568 NM_030797 81553 Hs.467769 NM_030797 HPRD:07729 FAM49A - family with sequence similarity 49, member A protein-coding 13-PTNLD9-TUMOR_peak_30326 chr20 3800844 3801361 + 11.77842 NA promoter-TSS (NM_018347) promoter-TSS (NM_018347) -69 NM_001204446 55317 Hs.104806 NM_018347 HPRD:16649 AP5S1 C20orf29 adaptor-related protein complex 5, sigma 1 subunit protein-coding 13-PTNLD9-TUMOR_peak_52842 chr9 19110999 19111135 + 11.77842 NA Intergenic AluSz|SINE|Alu -8127 NM_001270890 54801 Hs.533468 NM_017645 HPRD:13302 HAUS6 Dgt6|FAM29A HAUS augmin-like complex, subunit 6 protein-coding 13-PTNLD9-TUMOR_peak_2375 chr1 88178036 88178321 + 11.77842 NA Intergenic L2c|LINE|L2 -340840 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 13-PTNLD9-TUMOR_peak_51805 chr8 123792437 123792618 + 11.77537 NA Intergenic CpG -1374 NM_014943 22882 Hs.377090 NM_014943 HPRD:16458 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 13-PTNLD9-TUMOR_peak_14253 chr12 125425218 125425446 + 11.77209 NA Intergenic L2a|LINE|L2 25239 NR_049820 100847004 NR_049820 miRBase:MI0018167 MIR5188 - microRNA 5188 ncRNA 13-PTNLD9-TUMOR_peak_39484 chr4 142141417 142141727 + 11.76907 NA promoter-TSS (NM_001292002) promoter-TSS (NM_001292002) -469 NM_001292002 27309 Hs.120766 NM_014487 HPRD:15775 ZNF330 HSA6591|NOA36 zinc finger protein 330 protein-coding 13-PTNLD9-TUMOR_peak_10327 chr11 66822551 66822892 + 11.76907 NA Intergenic Intergenic -1568 NM_014578 29984 Hs.15114 NM_014578 HPRD:05776 RHOD ARHD|RHOHP1|RHOM|Rho ras homolog family member D protein-coding 13-PTNLD9-TUMOR_peak_2495 chr1 94033027 94033244 + 11.76907 NA intron (NM_001261408, intron 12 of 13) intron (NM_001261408, intron 12 of 13) -24390 NR_034091 100129046 Hs.729244 NR_034091 LOC100129046 - uncharacterized LOC100129046 ncRNA 13-PTNLD9-TUMOR_peak_47048 chr7 22771046 22771204 + 11.76907 NA exon (NM_000600, exon 5 of 5) exon (NM_000600, exon 5 of 5) 4359 NM_000600 3569 Hs.654458 NM_000600 HPRD:00970 IL6 BSF2|HGF|HSF|IFNB2|IL-6 interleukin 6 protein-coding 13-PTNLD9-TUMOR_peak_53365 chr9 45792887 45793042 + 11.76731 NA Intergenic Intergenic -323979 NR_103714 100289124 Hs.567050 NM_001024608 ENSG00000237198 FAM27E2 FAM27E1 family with sequence similarity 27, member E2 ncRNA 13-PTNLD9-TUMOR_peak_31297 chr20 46424170 46424342 + 11.76731 NA Intergenic Intergenic -8896 NM_198596 55959 Hs.162016 NM_018837 HPRD:18130 SULF2 HSULF-2 sulfatase 2 protein-coding 13-PTNLD9-TUMOR_peak_15692 chr14 50234249 50234480 + 11.76731 NA promoter-TSS (NM_014315) promoter-TSS (NM_014315) -423 NM_014315 23588 Hs.509264 NM_014315 HPRD:08824 KLHDC2 HCLP-1|HCLP1|LCP kelch domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_6008 chr1 236686592 236686732 + 11.75758 NA promoter-TSS (NM_006499) promoter-TSS (NM_006499) -77 NM_006499 3964 Hs.4082 NM_006499 HPRD:09356 LGALS8 Gal-8|PCTA-1|PCTA1|Po66-CBP lectin, galactoside-binding, soluble, 8 protein-coding 13-PTNLD9-TUMOR_peak_31638 chr20 55205219 55205452 + 11.74746 NA intron (NM_003222, intron 1 of 6) CpG-16801 977 NM_003222 7022 Hs.473152 NM_003222 HPRD:03361 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma) protein-coding 13-PTNLD9-TUMOR_peak_5553 chr1 224131899 224132030 + 11.74746 NA Intergenic AluSz|SINE|Alu -98290 NM_005426 7159 Hs.523968 NM_005426 HPRD:11803 TP53BP2 53BP2|ASPP2|BBP|P53BP2|PPP1R13A tumor protein p53 binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_17999 chr15 92486383 92486574 + 11.74746 NA intron (NM_013272, intron 2 of 9) L1MB2|LINE|L1 89540 NM_013272 28232 Hs.311187 NM_013272 HPRD:07502 SLCO3A1 OATP-D|OATP3A1|OATPD|SLC21A11 solute carrier organic anion transporter family, member 3A1 protein-coding 13-PTNLD9-TUMOR_peak_19672 chr16 70032049 70032154 + 11.74286 NA intron (NR_003610, intron 16 of 25) intron (NR_003610, intron 16 of 25) -32148 NR_036265 100422922 NR_036265 miRBase:MI0015977 MIR1972-2 - microRNA 1972-2 ncRNA 13-PTNLD9-TUMOR_peak_36007 chr3 134053902 134054061 + 11.74161 NA Intergenic Intergenic 32723 NR_106885 102466744 NR_106885 MIR6827 hsa-mir-6827 microRNA 6827 ncRNA 13-PTNLD9-TUMOR_peak_36253 chr3 143426769 143427074 + 11.74136 NA intron (NM_173653, intron 4 of 15) intron (NM_173653, intron 4 of 15) 140452 NM_173653 285195 Hs.302257 NM_173653 HPRD:12226 SLC9A9 AUTS16|NHE9 solute carrier family 9, subfamily A (NHE9, cation proton antiporter 9), member 9 protein-coding 13-PTNLD9-TUMOR_peak_7212 chr10 46508621 46508793 + 11.74136 NA Intergenic Intergenic 111351 NM_001042357 26095 Hs.440733 NM_015605 HPRD:10898 PTPN20B CT126|PTPN20A|bA142I17.1|bA42B19.1|hPTPN20 protein tyrosine phosphatase, non-receptor type 20B protein-coding 13-PTNLD9-TUMOR_peak_37771 chr4 6345685 6346158 + 11.74136 NA intron (NM_020416, intron 6 of 8) MamGypLTR1d|LTR|Gypsy 37676 NM_181876 5522 Hs.479069 NM_020416 HPRD:09345 PPP2R2C B55-GAMMA|IMYPNO|IMYPNO1|PR52|PR55G protein phosphatase 2, regulatory subunit B, gamma protein-coding 13-PTNLD9-TUMOR_peak_484 chr1 15303814 15304195 + 11.74136 NA intron (NM_001017999, intron 2 of 7) intron (NM_001017999, intron 2 of 7) 31589 NM_001017999 23254 Hs.368823 NM_015209 HPRD:11122 KAZN KAZ kazrin, periplakin interacting protein protein-coding 13-PTNLD9-TUMOR_peak_52353 chr8 142328171 142328476 + 11.74136 NA Intergenic Intergenic -22325 NR_024441 731779 Hs.586414 NR_024441 ENSG00000253595 LINC01300 - long intergenic non-protein coding RNA 1300 ncRNA 13-PTNLD9-TUMOR_peak_38726 chr4 82765985 82766187 + 11.74136 NA Intergenic Intergenic -373004 NM_001300736 153020 Hs.591696 NM_152545 HPRD:17955 RASGEF1B GPIG4 RasGEF domain family, member 1B protein-coding 13-PTNLD9-TUMOR_peak_43151 chr5 175608525 175608741 + 11.74136 NA intron (NR_036494, intron 6 of 25) AluJb|SINE|Alu 17665 NR_036494 643201 Hs.390285 NR_036494 ENSG00000248596 LOC643201 - centrosomal protein 192kDa pseudogene pseudo 13-PTNLD9-TUMOR_peak_23987 chr19 11249355 11249741 + 11.74123 NA Intergenic Intergenic 16936 NM_182513 147841 Hs.381225 NM_182513 SPC24 SPBC24 SPC24, NDC80 kinetochore complex component protein-coding 13-PTNLD9-TUMOR_peak_32842 chr22 21744465 21744583 + 11.74008 NA Intergenic Intergenic 6484 NM_001128635 440804 Hs.568257 NM_001128635 ENSG00000196934 RIMBP3B RIM-BP3.2|RIM-BP3.B|RIMBP3.2 RIMS binding protein 3B protein-coding 13-PTNLD9-TUMOR_peak_13628 chr12 104350751 104351336 + 11.74008 NA promoter-TSS (NM_001135570) promoter-TSS (NM_001135570) -50 NM_001135570 728568 Hs.42547 NM_001135570 ENSG00000204954 C12orf73 - chromosome 12 open reading frame 73 protein-coding 13-PTNLD9-TUMOR_peak_49277 chr7 137372654 137372965 + 11.74008 NA intron (NM_004717, intron 2 of 33) intron (NM_004717, intron 2 of 33) 158800 NM_004717 9162 Hs.242947 NM_004717 HPRD:07238 DGKI DGK-IOTA diacylglycerol kinase, iota protein-coding 13-PTNLD9-TUMOR_peak_31123 chr20 42805947 42806076 + 11.73773 NA 3' UTR (NM_175913, exon 2 of 2) 3' UTR (NM_175913, exon 2 of 2) 10207 NM_175913 57158 Hs.441737 NM_020433 HPRD:12006 JPH2 CMH17|JP-2|JP2 junctophilin 2 protein-coding 13-PTNLD9-TUMOR_peak_45242 chr6 47452430 47452726 + 11.73773 NA intron (NM_012120, intron 1 of 17) intron (NM_012120, intron 1 of 17) 7053 NM_012120 23607 Hs.485518 NM_012120 HPRD:05026 CD2AP CMS CD2-associated protein protein-coding 13-PTNLD9-TUMOR_peak_45681 chr6 88518156 88518313 + 11.73773 NA intron (NR_110869, intron 2 of 4) intron (NR_110869, intron 2 of 4) 23656 NR_110869 101928911 Hs.571178 NR_110869 LOC101928911 - uncharacterized LOC101928911 ncRNA 13-PTNLD9-TUMOR_peak_52503 chr8 145244418 145244737 + 11.73773 NA intron (NM_001099281, intron 6 of 11) intron (NM_001099281, intron 6 of 11) 41029 NM_001288814 727957 Hs.443139 NM_032450 ENSG00000179832 MROH1 HEATR7A maestro heat-like repeat family member 1 protein-coding 13-PTNLD9-TUMOR_peak_3677 chr1 152365450 152365696 + 11.73773 NA Intergenic Intergenic 21177 NM_016190 49860 Hs.242057 NM_016190 HPRD:12720 CRNN C1orf10|DRC1|PDRC1|SEP53 cornulin protein-coding 13-PTNLD9-TUMOR_peak_55876 chrX 52881992 52882158 + 11.73773 NA Intergenic Intergenic 14257 NM_130776 170626 Hs.43879 NM_130776 HPRD:06676 XAGE3 CT12.3a|CT12.3b|GAGED4|PLAC6|XAGE-3|pp9012 X antigen family, member 3 protein-coding 13-PTNLD9-TUMOR_peak_56674 chrX 152933452 152933566 + 11.73773 NA Intergenic Intergenic 5234 NM_001135740 139728 Hs.436667 NM_198452 ENSG00000130822 PNCK BSTK3|CaMK1b pregnancy up-regulated nonubiquitous CaM kinase protein-coding 13-PTNLD9-TUMOR_peak_33949 chr3 15780058 15780225 + 11.73773 NA intron (NM_001195098, intron 4 of 27) MER11B|LTR|ERVK 17917 NM_001195099 23243 Hs.335239 NM_015199 HPRD:10651 ANKRD28 PITK|PPP1R65 ankyrin repeat domain 28 protein-coding 13-PTNLD9-TUMOR_peak_31962 chr21 17055392 17055628 + 11.73773 NA Intergenic Intergenic -46834 NM_013396 29761 Hs.743994 NM_013396 HPRD:05296 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 13-PTNLD9-TUMOR_peak_46013 chr6 125684261 125684525 + 11.73773 NA Intergenic Intergenic -61111 NM_016063 51020 Hs.32826 NM_016063 HPRD:12897 HDDC2 C6orf74|NS5ATP2|dJ167O5.2 HD domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_45911 chr6 112033679 112033862 + 11.73773 NA intron (NM_153047, intron 2 of 10) MIRb|SINE|MIR 7495 NM_153047 2534 Hs.390567 NM_002037 HPRD:00655 FYN SLK|SYN|p59-FYN FYN proto-oncogene, Src family tyrosine kinase protein-coding 13-PTNLD9-TUMOR_peak_24729 chr19 34992526 34992707 + 11.73773 NA TTS (NM_001080436) TTS (NM_001080436) 19736 NM_001080436 126374 Hs.585010 NM_001080436 WTIP - Wilms tumor 1 interacting protein protein-coding 13-PTNLD9-TUMOR_peak_23243 chr18 54049831 54050016 + 11.73773 NA Intergenic Intergenic -245156 NR_040025 100505474 Hs.662191 NR_040025 ENSG00000267712 LOC100505474 - uncharacterized LOC100505474 ncRNA 13-PTNLD9-TUMOR_peak_29409 chr2 193280888 193281100 + 11.73773 NA Intergenic Intergenic -221350 NM_016192 23671 Hs.144513 NM_016192 HPRD:05760 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR transmembrane protein with EGF-like and two follistatin-like domains 2 protein-coding 13-PTNLD9-TUMOR_peak_26771 chr2 45355861 45356197 + 11.73773 NA Intergenic L2|LINE|L2 -119487 NM_016932 10736 Hs.101937 NM_016932 HPRD:05408 SIX2 - SIX homeobox 2 protein-coding 13-PTNLD9-TUMOR_peak_18870 chr16 28273265 28273449 + 11.72876 NA Intergenic Intergenic -30483 NM_001024401 388228 Hs.97837 NM_001024401 HPRD:18608 SBK1 SBK SH3 domain binding kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_36235 chr3 142442705 142442978 + 11.72876 NA promoter-TSS (NM_003304) promoter-TSS (NM_003304) -425 NM_003304 7220 Hs.250687 NM_003304 HPRD:11894 TRPC1 HTRP-1|TRP1 transient receptor potential cation channel, subfamily C, member 1 protein-coding 13-PTNLD9-TUMOR_peak_22220 chr17 78099940 78100100 + 11.72876 NA Intergenic L1ME1|LINE|L1 20962 NM_014740 9775 Hs.389649 NM_014740 HPRD:06482 EIF4A3 DDX48|MUK34|NMP265|NUK34|RCPS|eIF4AIII eukaryotic translation initiation factor 4A3 protein-coding 13-PTNLD9-TUMOR_peak_27846 chr2 101737206 101737351 + 11.72876 NA intron (NM_001102426, intron 1 of 19) intron (NM_001102426, intron 1 of 19) 30568 NM_001102426 11138 Hs.442657 NM_007063 HPRD:06752 TBC1D8 AD3|HBLP1|TBC1D8A|VRP TBC1 domain family, member 8 (with GRAM domain) protein-coding 13-PTNLD9-TUMOR_peak_26595 chr2 37617652 37617859 + 11.72876 NA Intergenic Intergenic 46002 NM_012413 25797 Hs.79033 NM_012413 HPRD:06140 QPCT GCT|QC|sQC glutaminyl-peptide cyclotransferase protein-coding 13-PTNLD9-TUMOR_peak_31008 chr20 37554887 37555086 + 11.72876 NA promoter-TSS (NM_030919) promoter-TSS (NM_030919) 31 NM_030919 81610 Hs.726442 NM_030919 HPRD:12744 FAM83D C20orf129|CHICA|dJ616B8.3 family with sequence similarity 83, member D protein-coding 13-PTNLD9-TUMOR_peak_11591 chr11 128286959 128287140 + 11.72861 NA Intergenic L2c|LINE|L2 105156 NM_005238 2113 Hs.369438 NM_005238 HPRD:01260 ETS1 ETS-1|EWSR2|p54 v-ets avian erythroblastosis virus E26 oncogene homolog 1 protein-coding 13-PTNLD9-TUMOR_peak_26349 chr2 26231892 26232182 + 11.72861 NA Intergenic Intergenic -24692 NM_016131 10890 Hs.467960 NM_016131 HPRD:06692 RAB10 - RAB10, member RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_52584 chr9 304691 304829 + 11.72861 NA intron (NM_001193536, intron 4 of 46) intron (NM_001193536, intron 4 of 46) 31712 NM_001193536 81704 Hs.132599 NM_203447 HPRD:10920 DOCK8 HEL-205|MRD2|ZIR8 dedicator of cytokinesis 8 protein-coding 13-PTNLD9-TUMOR_peak_14450 chr13 25576601 25576743 + 11.72861 NA Intergenic Intergenic -34065 NR_026730 646405 Hs.620592 NM_001126062 TPTE2P1 - transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_48585 chr7 100907769 100907895 + 11.72861 NA Intergenic Intergenic -19461 NM_016068 51024 Hs.423968 NM_016068 HPRD:12352 FIS1 TTC11 fission 1 (mitochondrial outer membrane) homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_38227 chr4 40674981 40675237 + 11.72861 NA Intergenic Intergenic -43226 NM_001098634 54502 Hs.518727 NM_019027 ENSG00000163694 RBM47 NET18 RNA binding motif protein 47 protein-coding 13-PTNLD9-TUMOR_peak_43562 chr6 3912174 3912349 + 11.72861 NA Intergenic Intergenic 62629 NM_012135 26240 Hs.140944 NM_012135 HPRD:16883 FAM50B D6S2654E|X5L family with sequence similarity 50, member B protein-coding 13-PTNLD9-TUMOR_peak_5353 chr1 212208384 212208628 + 11.72861 NA promoter-TSS (NM_016448) promoter-TSS (NM_016448) -389 NM_016448 51514 Hs.656473 NM_016448 HPRD:17952 DTL CDT2|DCAF2|L2DTL|RAMP denticleless E3 ubiquitin protein ligase homolog (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_37944 chr4 9481498 9481748 + 11.72861 NA Intergenic HERVE-int|LTR|ERV1 35363 NM_001040448 644414 Hs.590200 NM_001040448 ENSG00000186146 DEFB131 DEFB-31 defensin, beta 131 protein-coding 13-PTNLD9-TUMOR_peak_36714 chr3 171002229 171002373 + 11.72861 NA intron (NM_001161565, intron 2 of 30) LTR16A|LTR|ERVL 175896 NM_001161564 23043 Hs.34024 NM_015028 HPRD:18206 TNIK - TRAF2 and NCK interacting kinase protein-coding 13-PTNLD9-TUMOR_peak_36438 chr3 152927503 152927686 + 11.72861 NA Intergenic Intergenic 47593 NM_002886 5912 Hs.98643 NM_002886 RAP2B - RAP2B, member of RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_15079 chr13 108578447 108578626 + 11.72861 NA Intergenic L1PA2|LINE|L1 -59076 NM_001080396 728215 Hs.535394 NM_001080396 ENSG00000204442 FAM155A - family with sequence similarity 155, member A protein-coding 13-PTNLD9-TUMOR_peak_8818 chr11 2471422 2471556 + 11.72861 NA intron (NM_000218, intron 1 of 15) intron (NM_000218, intron 1 of 15) 5268 NM_000218 3784 Hs.95162 NM_000218 HPRD:06341 KCNQ1 ATFB1|ATFB3|JLNS1|KCNA8|KCNA9|KVLQT1|Kv1.9|Kv7.1|LQT|LQT1|RWS|SQT2|WRS potassium voltage-gated channel, KQT-like subfamily, member 1 protein-coding 13-PTNLD9-TUMOR_peak_606 chr1 20822756 20823012 + 11.72861 NA Intergenic Intergenic -10156 NM_018584 55450 Hs.731383 NM_018584 HPRD:13112 CAMK2N1 PRO1489 calcium/calmodulin-dependent protein kinase II inhibitor 1 protein-coding 13-PTNLD9-TUMOR_peak_10902 chr11 92090705 92090881 + 11.72861 NA intron (NM_001008781, intron 1 of 24) intron (NM_001008781, intron 1 of 24) 5531 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10 FAT atypical cadherin 3 protein-coding 13-PTNLD9-TUMOR_peak_10678 chr11 76029951 76030070 + 11.72861 NA Intergenic Intergenic 61870 NM_004705 5612 Hs.503315 NM_004705 HPRD:09567 PRKRIR DAP4|P52rIPK|THAP0|THAP12 protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) protein-coding 13-PTNLD9-TUMOR_peak_3017 chr1 117493404 117493667 + 11.72861 NA intron (NM_020440, intron 4 of 8) intron (NM_020440, intron 4 of 8) 40846 NM_020440 5738 Hs.418093 NM_020440 HPRD:03124 PTGFRN CD315|CD9P-1|EWI-F|FPRP|SMAP-6 prostaglandin F2 receptor inhibitor protein-coding 13-PTNLD9-TUMOR_peak_47310 chr7 42898318 42898437 + 11.72861 NA Intergenic Intergenic 53312 NM_001099858 79020 Hs.698120 NM_024054 HPRD:09861 C7orf25 - chromosome 7 open reading frame 25 protein-coding 13-PTNLD9-TUMOR_peak_5510 chr1 223406986 223407166 + 11.72861 NA intron (NM_017982, intron 5 of 8) intron (NM_017982, intron 5 of 8) -90452 NM_003268 7100 Hs.604542 NM_003268 HPRD:04326 TLR5 MELIOS|SLE1|SLEB1|TIL3 toll-like receptor 5 protein-coding 13-PTNLD9-TUMOR_peak_30751 chr20 30437350 30437531 + 11.72811 NA Intergenic CpG -4020 NM_004118 2307 Hs.516971 NM_004118 HPRD:04246 FOXS1 FKHL18|FREAC10 forkhead box S1 protein-coding 13-PTNLD9-TUMOR_peak_10719 chr11 77734229 77734462 + 11.72811 NA promoter-TSS (NM_023930) promoter-TSS (NM_023930) -25 NM_023930 65987 Hs.709780 NM_023930 HPRD:13764 KCTD14 - potassium channel tetramerization domain containing 14 protein-coding 13-PTNLD9-TUMOR_peak_53342 chr9 44742694 44742836 + 11.72811 NA Intergenic L1MC4|LINE|L1 -247471 NR_027421 100132948 Hs.645763 NM_001024942 ENSG00000154537 FAM27C FAM27A|FAM27A1|FAM27A3 family with sequence similarity 27, member C ncRNA 13-PTNLD9-TUMOR_peak_5460 chr1 221882439 221882620 + 11.72811 NA intron (NR_111940, intron 1 of 2) intron (NR_111940, intron 1 of 2) 27713 NR_111939 11221 Hs.497822 NM_007207 HPRD:12320 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 13-PTNLD9-TUMOR_peak_29504 chr2 201270303 201270611 + 11.72811 NA intron (NM_001282735, intron 3 of 12) intron (NM_001282735, intron 3 of 12) 96784 NM_001282744 26010 Hs.120323 NM_015535 HPRD:10916 SPATS2L DNAPTP6|SGNP spermatogenesis associated, serine-rich 2-like protein-coding 13-PTNLD9-TUMOR_peak_10156 chr11 64126512 64126648 + 11.72551 NA promoter-TSS (NM_001006944) promoter-TSS (NM_001006944) -45 NM_001006944 8986 Hs.105584 NM_003942 HPRD:04677 RPS6KA4 MSK2|RSK-B ribosomal protein S6 kinase, 90kDa, polypeptide 4 protein-coding 13-PTNLD9-TUMOR_peak_40735 chr5 43064916 43065245 + 11.71771 NA TTS (NR_034127) TTS (NR_034127) 1993 NR_034127 100132356 Hs.726831 NM_175919 LOC100132356 - uncharacterized LOC100132356 ncRNA 13-PTNLD9-TUMOR_peak_49424 chr7 141804461 141804921 + 11.71771 NA intron (NM_004668, intron 47 of 47) intron (NM_004668, intron 47 of 47) -6858 NM_001293626 93432 Hs.647098 NM_001008748 ENSG00000257743 LOC93432 - maltase-glucoamylase (alpha-glucosidase) protein-coding 13-PTNLD9-TUMOR_peak_39427 chr4 140477552 140477849 + 11.71771 NA promoter-TSS (NM_030648) promoter-TSS (NM_030648) -123 NM_030648 80854 Hs.480792 NM_030648 HPRD:16226 SETD7 KMT7|SET7|SET7/9|SET9 SET domain containing (lysine methyltransferase) 7 protein-coding 13-PTNLD9-TUMOR_peak_44784 chr6 35693967 35694156 + 11.71550 NA TTS (NR_027117) TTS (NR_027117) 2299 NM_001145775 2289 Hs.407190 NM_004117 HPRD:04019 FKBP5 AIG6|FKBP51|FKBP54|P54|PPIase|Ptg-10 FK506 binding protein 5 protein-coding 13-PTNLD9-TUMOR_peak_35858 chr3 129209187 129209386 + 11.71524 NA intron (NM_052989, intron 16 of 29) intron (NM_052989, intron 16 of 29) -38196 NM_000539 6010 Hs.247565 NM_000539 HPRD:01584 RHO CSNBAD1|OPN2|RP4 rhodopsin protein-coding 13-PTNLD9-TUMOR_peak_38622 chr4 77227303 77227949 + 11.70505 NA 5' UTR (NM_003943, exon 1 of 2) 5' UTR (NM_003943, exon 1 of 2) 447 NM_003943 8987 Hs.109590 NM_003943 HPRD:08460 STBD1 GENEX3414 starch binding domain 1 protein-coding 13-PTNLD9-TUMOR_peak_18162 chr16 762805 763004 + 11.70505 NA Intergenic L1MB3|LINE|L1 -2269 NM_024042 79006 Hs.533772 NM_024042 METRN C16orf23|c380A1.2 meteorin, glial cell differentiation regulator protein-coding 13-PTNLD9-TUMOR_peak_37042 chr3 185815613 185815840 + 11.69618 NA intron (NM_004454, intron 5 of 12) intron (NM_004454, intron 5 of 12) 11175 NM_004454 2119 Hs.43697 NM_004454 HPRD:09035 ETV5 ERM ets variant 5 protein-coding 13-PTNLD9-TUMOR_peak_2007 chr1 61918861 61919281 + 11.69618 NA intron (NM_001145511, intron 10 of 10) intron (NM_001145511, intron 10 of 10) -199881 NR_104180 645030 Hs.632410 NR_104180 NFIA-AS1 - NFIA antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_29309 chr2 187440160 187440309 + 11.69618 NA Intergenic Intergenic -14556 NM_002210 3685 Hs.436873 NM_002210 HPRD:01903 ITGAV CD51|MSK8|VNRA|VTNR integrin, alpha V protein-coding 13-PTNLD9-TUMOR_peak_40688 chr5 40108986 40109292 + 11.69618 NA Intergenic HERVK11-int|LTR|ERVK 56746 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 13-PTNLD9-TUMOR_peak_19254 chr16 47178324 47178462 + 11.69618 NA promoter-TSS (NM_001201477) promoter-TSS (NM_001201477) 414 NR_110904 101927102 Hs.634652 NR_110903 LOC101927102 - uncharacterized LOC101927102 ncRNA 13-PTNLD9-TUMOR_peak_21878 chr17 67410663 67410996 + 11.69618 NA promoter-TSS (NM_002758) promoter-TSS (NM_002758) -9 NM_002758 5608 Hs.463978 NM_002758 MAP2K6 MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3 mitogen-activated protein kinase kinase 6 protein-coding 13-PTNLD9-TUMOR_peak_52136 chr8 133519775 133520168 + 11.69618 NA Intergenic Intergenic -26967 NM_004519 3786 Hs.374023 NM_004519 HPRD:09077 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel, KQT-like subfamily, member 3 protein-coding 13-PTNLD9-TUMOR_peak_27527 chr2 87992507 87992748 + 11.69618 NA Intergenic LTR51|LTR|ERV1 -54979 NM_002665 5342 Hs.652169 NM_002665 PLGLB2 PLGP1 plasminogen-like B2 protein-coding 13-PTNLD9-TUMOR_peak_2402 chr1 89530956 89531161 + 11.69618 NA promoter-TSS (NM_002053) promoter-TSS (NM_002053) -15 NM_002053 2633 Hs.62661 NM_002053 HPRD:02681 GBP1 - guanylate binding protein 1, interferon-inducible protein-coding 13-PTNLD9-TUMOR_peak_14186 chr12 124003776 124003977 + 11.69100 NA intron (NM_178314, intron 2 of 6) intron (NM_178314, intron 2 of 6) 14389 NM_178314 353116 Hs.530315 NM_178314 HPRD:13435 RILPL1 GOSPEL|RLP1 Rab interacting lysosomal protein-like 1 protein-coding 13-PTNLD9-TUMOR_peak_35783 chr3 127465462 127465690 + 11.69100 NA intron (NM_001003794, intron 3 of 7) intron (NM_001003794, intron 3 of 7) 73795 NR_033429 80325 Hs.107812 NM_032548 HPRD:10513 ABTB1 BPOZ|BTB3|BTBD21|EF1ABP ankyrin repeat and BTB (POZ) domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_41693 chr5 108083458 108083630 + 11.68828 NA promoter-TSS (NM_005246) promoter-TSS (NM_005246) 21 NM_005246 2241 Hs.221472 NM_005246 FER FerT|PPP1R74|Pe1Fe10|Pe1Fe13|Pe1Fe3|Pe1Fe6|TYK3 fer (fps/fes related) tyrosine kinase protein-coding 13-PTNLD9-TUMOR_peak_14031 chr12 120675687 120675903 + 11.68828 NA intron (NM_001243756, intron 1 of 10) intron (NM_001243756, intron 1 of 10) 12169 NM_025157 5829 Hs.446336 NM_002859 ENSG00000089159 PXN - paxillin protein-coding 13-PTNLD9-TUMOR_peak_30563 chr20 19957610 19957969 + 11.68700 NA intron (NM_001242581, intron 8 of 11) intron (NM_001242581, intron 8 of 11) -40145 NM_181528 51126 Hs.368783 NM_016100 HPRD:07136 NAA20 NAT3|NAT3P|NAT5|NAT5P|dJ1002M8.1 N(alpha)-acetyltransferase 20, NatB catalytic subunit protein-coding 13-PTNLD9-TUMOR_peak_14234 chr12 125211824 125212189 + 11.68660 NA Intergenic Intergenic 136513 NM_005505 949 Hs.731377 NM_005505 HPRD:03024 SCARB1 CD36L1|CLA-1|CLA1|HDLQTL6|SR-BI|SRB1 scavenger receptor class B, member 1 protein-coding 13-PTNLD9-TUMOR_peak_17638 chr15 74485623 74485961 + 11.68660 NA TTS (NM_001142620) TTS (NM_001142620) 9428 NM_022369 64220 Hs.24553 NM_022369 HPRD:18122 STRA6 MCOPCB8|MCOPS9 stimulated by retinoic acid 6 protein-coding 13-PTNLD9-TUMOR_peak_47267 chr7 38903262 38903503 + 11.68226 NA intron (NM_080631, intron 3 of 27) intron (NM_080631, intron 3 of 27) 45418 NM_080631 27072 Hs.592184 NM_014396 HPRD:10402 VPS41 HVPS41|HVSP41|hVps41p vacuolar protein sorting 41 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_40662 chr5 38783323 38783704 + 11.68226 NA intron (NR_109951, intron 2 of 3) MIR3|SINE|MIR 62418 NR_109951 101929768 Hs.546623 NR_109951 OSMR-AS1 CTD-2127H9.1 OSMR antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_29963 chr2 228717985 228718252 + 11.68226 NA Intergenic MER5B|DNA|hAT-Charlie -18209 NM_178821 164781 Hs.424594 NM_178821 HPRD:08079 DAW1 ODA16|WDR69 dynein assembly factor with WDR repeat domains 1 protein-coding 13-PTNLD9-TUMOR_peak_28089 chr2 113012489 113012750 + 11.68226 NA promoter-TSS (NM_032494) promoter-TSS (NM_032494) 45 NM_032494 84524 Hs.418416 NM_032494 HPRD:11695 ZC3H8 Fliz1|ZC3HDC8 zinc finger CCCH-type containing 8 protein-coding 13-PTNLD9-TUMOR_peak_39970 chr4 184678328 184678542 + 11.68226 NA Intergenic Intergenic 98015 NM_199053 60684 Hs.443240 NM_021942 HPRD:10968 TRAPPC11 C4orf41|FOIGR|GRY|LGMD2S trafficking protein particle complex 11 protein-coding 13-PTNLD9-TUMOR_peak_47082 chr7 24826645 24826844 + 11.68226 NA Intergenic Intergenic -29105 NM_001127454 1687 Hs.520708 NM_004403 HPRD:02996 DFNA5 ICERE-1 deafness, autosomal dominant 5 protein-coding 13-PTNLD9-TUMOR_peak_32956 chr22 24699390 24699779 + 11.68226 NA intron (NR_103546, intron 3 of 19) intron (NR_103546, intron 3 of 19) 32799 NM_015330 23384 Hs.474384 NM_015330 HPRD:11080 SPECC1L CYTSA|OBLFC1 sperm antigen with calponin homology and coiled-coil domains 1-like protein-coding 13-PTNLD9-TUMOR_peak_25077 chr19 43979416 43979663 + 11.68226 NA 3' UTR (NM_198850, exon 16 of 16) 3' UTR (NM_198850, exon 16 of 16) -9708 NM_014400 27076 Hs.631594 NM_014400 HPRD:10783 LYPD3 C4.4A LY6/PLAUR domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_6344 chr10 4813043 4813228 + 11.68226 NA Intergenic Intergenic -55234 NM_001271021 83592 Hs.657944 NM_031436 HPRD:07472 AKR1E2 AKR1CL2|AKRDC1|LoopADR|hTSP|htAKR aldo-keto reductase family 1, member E2 protein-coding 13-PTNLD9-TUMOR_peak_51705 chr8 119147006 119147217 + 11.68226 NA Intergenic Intergenic -23053 NM_000127 2131 Hs.492618 NM_000127 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_9251 chr11 18951798 18951942 + 11.68226 NA Intergenic Intergenic 4679 NM_147199 259249 Hs.711459 NM_147199 HPRD:06246 MRGPRX1 GPCR|MGRG2|MRGX1|SNSR4 MAS-related GPR, member X1 protein-coding 13-PTNLD9-TUMOR_peak_13739 chr12 108726899 108727145 + 11.68226 NA intron (NM_004072, intron 1 of 2) intron (NM_004072, intron 1 of 2) 6072 NM_001142344 1240 Hs.197143 NM_004072 HPRD:03829 CMKLR1 CHEMERINR|ChemR23|DEZ|RVER1 chemokine-like receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_35390 chr3 112465596 112465774 + 11.67907 NA intron (NR_110017, intron 1 of 4) LTR64|LTR|ERV1 2481 NR_110017 101929694 Hs.385630 NR_110017 ENSG00000240893 LOC101929694 - uncharacterized LOC101929694 ncRNA 13-PTNLD9-TUMOR_peak_25070 chr19 42927717 42927913 + 11.67907 NA promoter-TSS (NR_073179) promoter-TSS (NR_073179) -92 NR_073179 100996307 Hs.466840 NR_073179 ENSG00000213904 LIPE-AS1 - LIPE antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_55773 chrX 46187059 46187258 + 11.67907 NA promoter-TSS (NR_110388) promoter-TSS (NR_110388) -49 NR_110388 101927574 Hs.350952 NR_110388 LINC01186 - long intergenic non-protein coding RNA 1186 ncRNA 13-PTNLD9-TUMOR_peak_41764 chr5 112502557 112502923 + 11.67907 NA intron (NM_001085377, intron 3 of 18) L3b|LINE|CR1 127872 NM_002387 4163 Hs.593171 NM_002387 HPRD:01157 MCC MCC1 mutated in colorectal cancers protein-coding 13-PTNLD9-TUMOR_peak_45500 chr6 73974299 73974464 + 11.67907 NA intron (NM_001251874, intron 2 of 4) intron (NM_001251874, intron 2 of 4) -1474 NM_030568 80759 Hs.433062 NM_030568 HPRD:10790 KHDC1 C6orf148|NDG1|bA257K9.4 KH homology domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_53864 chr9 89230165 89230459 + 11.67907 NA Intergenic Intergenic -260910 NM_001185059 79670 Hs.597057 NM_024617 HPRD:11697 ZCCHC6 PAPD6|TUT7 zinc finger, CCHC domain containing 6 protein-coding 13-PTNLD9-TUMOR_peak_13889 chr12 112847342 112847542 + 11.67907 NA promoter-TSS (NM_000970) promoter-TSS (NM_000970) 1 NM_001024662 6128 Hs.546283 NM_000970 HPRD:04745 RPL6 L6|SHUJUN-2|TAXREB107|TXREB1 ribosomal protein L6 protein-coding 13-PTNLD9-TUMOR_peak_42092 chr5 133474157 133474312 + 11.67907 NA intron (NR_033449, intron 2 of 7) intron (NR_033449, intron 2 of 7) 22884 NR_033449 6932 Hs.573153 NM_003202 HPRD:01797 TCF7 TCF-1 transcription factor 7 (T-cell specific, HMG-box) protein-coding 13-PTNLD9-TUMOR_peak_36569 chr3 159480156 159480286 + 11.67755 NA intron (NM_001197108, intron 1 of 6) intron (NM_001197108, intron 1 of 6) 6180 NR_121669 100874433 Hs.601476 NR_121669 IQCJ-SCHIP1-AS1 uaz98 IQCJ-SCHIP1 readthrough antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_48740 chr7 105709502 105709788 + 11.67446 NA Intergenic L2b|LINE|L2 43146 NM_182715 6856 Hs.80919 NM_006754 HPRD:15459 SYPL1 H-SP1|SYPL synaptophysin-like 1 protein-coding 13-PTNLD9-TUMOR_peak_51715 chr8 119560817 119561023 + 11.67047 NA intron (NR_109794, intron 2 of 4) L1PA3|LINE|L1 -72320 NR_038210 552860 Hs.571527 NR_038210 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_53211 chr9 38069759 38069929 + 11.67047 NA promoter-TSS (NM_003028) promoter-TSS (NM_003028) -634 NM_003028 6461 Hs.521482 NM_003028 SHB bA3J10.2 Src homology 2 domain containing adaptor protein B protein-coding 13-PTNLD9-TUMOR_peak_43741 chr6 10441239 10441399 + 11.67047 NA Intergenic Intergenic 1369 NR_049872 100846998 NR_049872 miRBase:MI0019294 MIR5689 - microRNA 5689 ncRNA 13-PTNLD9-TUMOR_peak_43395 chr6 1040134 1040263 + 11.67047 NA intron (NR_027115, intron 1 of 4) intron (NR_027115, intron 1 of 4) 61369 NR_027116 285768 Hs.209463 NR_027115 LOC285768 - uncharacterized LOC285768 ncRNA 13-PTNLD9-TUMOR_peak_34655 chr3 52278228 52278636 + 11.65988 NA Intergenic Intergenic -1377 NM_144641 132160 Hs.373560 NM_144641 HPRD:12350 PPM1M PP2C-eta|PP2CE|PP2Ceta protein phosphatase, Mg2+/Mn2+ dependent, 1M protein-coding 13-PTNLD9-TUMOR_peak_42704 chr5 151121343 151121497 + 11.65988 NA TTS (NM_004045) TTS (NM_004045) 16790 NM_004045 475 Hs.125213 NM_004045 HPRD:03779 ATOX1 ATX1|HAH1 antioxidant 1 copper chaperone protein-coding 13-PTNLD9-TUMOR_peak_26058 chr2 9699165 9699507 + 11.65784 NA Intergenic MLT1F2|LTR|ERVL-MaLR -3419 NM_003183 6868 Hs.404914 NM_003183 HPRD:04703 ADAM17 ADAM18|CD156B|CSVP|NISBD|TACE ADAM metallopeptidase domain 17 protein-coding 13-PTNLD9-TUMOR_peak_34583 chr3 50204817 50204967 + 11.65335 NA intron (NM_004186, intron 2 of 18) intron (NM_004186, intron 2 of 18) 12044 NM_004186 6405 Hs.32981 NM_004186 HPRD:03079 SEMA3F SEMA-IV|SEMA4|SEMAK sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F protein-coding 13-PTNLD9-TUMOR_peak_38225 chr4 40578996 40579439 + 11.65335 NA intron (NM_001098634, intron 1 of 6) intron (NM_001098634, intron 1 of 6) 52666 NM_001098634 54502 Hs.518727 NM_019027 ENSG00000163694 RBM47 NET18 RNA binding motif protein 47 protein-coding 13-PTNLD9-TUMOR_peak_7297 chr10 48958792 48959068 + 11.65335 NA intron (NR_111968, intron 1 of 5) intron (NR_111968, intron 1 of 5) -6301 NR_003611 399761 Hs.571994 NM_001040053 ENSG00000204164 BMS1P5 BMS1LP1|BMS1LP5|BMS1P1|bA556L1.3 BMS1 pseudogene 5 pseudo 13-PTNLD9-TUMOR_peak_39809 chr4 166033815 166034285 + 11.65335 NA promoter-TSS (NM_001100389) promoter-TSS (NM_001100389) -26 NM_001100389 201931 Hs.704511 NM_152681 TMEM192 - transmembrane protein 192 protein-coding 13-PTNLD9-TUMOR_peak_29524 chr2 201676852 201677370 + 11.65335 NA promoter-TSS (NM_001207068) promoter-TSS (NM_001207068) 55 NM_001207068 9689 Hs.355983 NM_014670 HPRD:16570 BZW1 BZAP45|Nbla10236 basic leucine zipper and W2 domains 1 protein-coding 13-PTNLD9-TUMOR_peak_27741 chr2 97437657 97437857 + 11.65335 NA intron (NM_020184, intron 1 of 6) intron (NM_020184, intron 1 of 6) 11118 NM_020184 26504 Hs.175043 NM_020184 HPRD:07420 CNNM4 ACDP4 cyclin and CBS domain divalent metal cation transport mediator 4 protein-coding 13-PTNLD9-TUMOR_peak_5746 chr1 228977947 228978255 + 11.65169 NA Intergenic Intergenic 107277 NM_021205 58480 Hs.647774 NM_021205 HPRD:06965 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 13-PTNLD9-TUMOR_peak_50744 chr8 42195455 42195638 + 11.65169 NA promoter-TSS (NM_002690) promoter-TSS (NM_002690) -427 NM_002690 5423 Hs.654484 NM_002690 HPRD:07517 POLB - polymerase (DNA directed), beta protein-coding 13-PTNLD9-TUMOR_peak_19316 chr16 50661370 50661644 + 11.65169 NA intron (NM_033119, intron 6 of 9) intron (NM_033119, intron 6 of 9) -41259 NR_110908 101927272 Hs.460777 NR_110908 ENSG00000260249 LOC101927272 - uncharacterized LOC101927272 ncRNA 13-PTNLD9-TUMOR_peak_20991 chr17 38109517 38109762 + 11.65169 NA Intergenic Intergenic -9587 NM_178171 284110 Hs.448873 NM_178171 HPRD:17081 GSDMA GSDM|GSDM1 gasdermin A protein-coding 13-PTNLD9-TUMOR_peak_8113 chr10 99331505 99331676 + 11.65169 NA promoter-TSS (NM_020349) promoter-TSS (NM_020349) -608 NM_001291218 26287 Hs.73708 NM_020349 HPRD:12460 ANKRD2 ARPP ankyrin repeat domain 2 (stretch responsive muscle) protein-coding 13-PTNLD9-TUMOR_peak_22116 chr17 75470087 75470272 + 11.65169 NA intron (NM_001293698, intron 1 of 9) intron (NM_001293698, intron 1 of 9) -1146 NM_001113495 10801 Hs.440932 NM_006640 HPRD:10360 SEPT9 AF17q25|MSF|MSF1|NAPB|PNUTL4|SINT1|SeptD1 septin 9 protein-coding 13-PTNLD9-TUMOR_peak_37692 chr4 3931354 3931539 + 11.65169 NA Intergenic HERVH-int|LTR|ERV1 25702 NR_024253 348926 Hs.591720 NR_024253 FAM86EP - family with sequence similarity 86, member A pseudogene pseudo 13-PTNLD9-TUMOR_peak_40281 chr5 9790992 9791117 + 11.65169 NA intron (NR_027112, intron 4 of 12) intron (NR_027112, intron 4 of 12) 112882 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LOC285692 - uncharacterized LOC285692 ncRNA 13-PTNLD9-TUMOR_peak_50298 chr8 22479943 22480137 + 11.64571 NA intron (NM_018688, intron 8 of 8) intron (NM_018688, intron 8 of 8) 17501 NM_021174 57805 Hs.744848 NM_021174 HPRD:09159 CCAR2 DBC-1|DBC1|KIAA1967|NET35|p30 DBC|p30DBC cell cycle and apoptosis regulator 2 protein-coding 13-PTNLD9-TUMOR_peak_17249 chr15 48623530 48623667 + 11.64571 NA promoter-TSS (NM_001948) promoter-TSS (NM_001948) -23 NM_001025249 1854 Hs.527980 NM_001948 HPRD:03165 DUT dUTPase deoxyuridine triphosphatase protein-coding 13-PTNLD9-TUMOR_peak_44147 chr6 24858492 24858803 + 11.63535 NA intron (NM_001286447, intron 8 of 13) intron (NM_001286447, intron 8 of 13) 18946 NM_015864 9750 Hs.559459 NM_014722 HPRD:12881 FAM65B C6orf32|DIFF40|DIFF48|MYONAP|PL48 family with sequence similarity 65, member B protein-coding 13-PTNLD9-TUMOR_peak_28096 chr2 113238662 113239081 + 11.63535 NA promoter-TSS (NM_153712) promoter-TSS (NM_153712) -872 NM_153712 150465 Hs.358997 NM_153712 TTL - tubulin tyrosine ligase protein-coding 13-PTNLD9-TUMOR_peak_29102 chr2 173701131 173701466 + 11.62910 NA intron (NM_001100397, intron 1 of 27) intron (NM_001100397, intron 1 of 27) 14983 NM_001100397 11069 Hs.470646 NM_007023 HPRD:06929 RAPGEF4 2|CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor (GEF) 4 protein-coding 13-PTNLD9-TUMOR_peak_16402 chr14 89290945 89291295 + 11.62910 NA exon (NM_198310, exon 2 of 14) exon (NM_198310, exon 2 of 14) 623 NM_001288782 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 13-PTNLD9-TUMOR_peak_43208 chr5 176973443 176973662 + 11.62910 NA intron (NM_001190946, intron 1 of 8) intron (NM_001190946, intron 1 of 8) 7996 NR_024019 54540 Hs.484289 NM_019057 HPRD:07671 FAM193B IRIZIO family with sequence similarity 193, member B protein-coding 13-PTNLD9-TUMOR_peak_26295 chr2 23574377 23574640 + 11.62910 NA Intergenic Intergenic -33790 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch-like family member 29 protein-coding 13-PTNLD9-TUMOR_peak_11592 chr11 128287542 128287750 + 11.62910 NA Intergenic Intergenic 104559 NM_005238 2113 Hs.369438 NM_005238 HPRD:01260 ETS1 ETS-1|EWSR2|p54 v-ets avian erythroblastosis virus E26 oncogene homolog 1 protein-coding 13-PTNLD9-TUMOR_peak_47039 chr7 22441320 22441512 + 11.62910 NA Intergenic Intergenic -44883 NM_012294 9771 Hs.174768 NM_012294 HPRD:15208 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor (GEF) 5 protein-coding 13-PTNLD9-TUMOR_peak_13089 chr12 60366862 60367073 + 11.62910 NA Intergenic LTR16A|LTR|ERVL 283849 NR_073056 9194 Hs.88156 NM_004731 HPRD:06791 SLC16A7 MCT2 solute carrier family 16 (monocarboxylate transporter), member 7 protein-coding 13-PTNLD9-TUMOR_peak_37224 chr3 190580509 190580833 + 11.62910 NA promoter-TSS (NM_001146686) promoter-TSS (NM_001146686) -206 NM_001146686 647309 Hs.518490 NM_001146686 ENSG00000205835 GMNC GEMC1 geminin coiled-coil domain containing protein-coding 13-PTNLD9-TUMOR_peak_30758 chr20 30619333 30619457 + 11.62910 NA 3' UTR (NM_080625, exon 9 of 9) 3' UTR (NM_080625, exon 9 of 9) -20596 NM_001172131 3055 Hs.655210 NM_002110 HPRD:00796 HCK JTK9|p59Hck|p61Hck HCK proto-oncogene, Src family tyrosine kinase protein-coding 13-PTNLD9-TUMOR_peak_28559 chr2 135761949 135762071 + 11.62910 NA intron (NM_001018047, intron 3 of 8) intron (NM_001018047, intron 3 of 8) 20238 NM_025052 80122 Hs.659395 NM_025052 HPRD:08016 MAP3K19 RCK|YSK4 mitogen-activated protein kinase kinase kinase 19 protein-coding 13-PTNLD9-TUMOR_peak_45323 chr6 53033395 53033549 + 11.62910 NA Intergenic Intergenic -19848 NM_003643 8521 Hs.28346 NM_003643 HPRD:04757 GCM1 GCMA|hGCMa glial cells missing homolog 1 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_52110 chr8 132044827 132044965 + 11.62910 NA intron (NM_001115, intron 1 of 17) intron (NM_001115, intron 1 of 17) 7939 NM_001115 114 Hs.591859 NM_001115 HPRD:00051 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 (brain) protein-coding 13-PTNLD9-TUMOR_peak_50500 chr8 29387039 29387263 + 11.62910 NA Intergenic Intergenic -178884 NM_001394 1846 Hs.417962 NM_001394 HPRD:04123 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 13-PTNLD9-TUMOR_peak_16790 chr15 22999598 22999837 + 11.62910 NA intron (NM_001033028, intron 14 of 15) intron (NM_001033028, intron 14 of 15) 34710 NM_001008894 81614 Hs.591003 NM_030922 HPRD:16290 NIPA2 - non imprinted in Prader-Willi/Angelman syndrome 2 protein-coding 13-PTNLD9-TUMOR_peak_36463 chr3 155043343 155043510 + 11.62910 NA Intergenic MER61A|LTR|ERV1 -31937 NR_037902 100507537 Hs.518341 NR_037902 ENSG00000240045 LOC100507537 - uncharacterized LOC100507537 ncRNA 13-PTNLD9-TUMOR_peak_38370 chr4 49333364 49333562 + 11.62818 NA Intergenic Intergenic 344804 NM_001286791 80157 Hs.479703 NM_025087 HPRD:08638 CWH43 CWH43-C cell wall biogenesis 43 C-terminal homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_18826 chr16 24863708 24863964 + 11.62793 NA intron (NM_001258413, intron 2 of 15) intron (NM_001258413, intron 2 of 15) 6284 NM_052944 115584 Hs.164118 NM_052944 ENSG00000158865 SLC5A11 KST1|RKST1|SGLT6|SMIT2 solute carrier family 5 (sodium/inositol cotransporter), member 11 protein-coding 13-PTNLD9-TUMOR_peak_18825 chr16 24863097 24863232 + 11.62793 NA intron (NM_001258413, intron 2 of 15) MIR|SINE|MIR 5612 NM_052944 115584 Hs.164118 NM_052944 ENSG00000158865 SLC5A11 KST1|RKST1|SGLT6|SMIT2 solute carrier family 5 (sodium/inositol cotransporter), member 11 protein-coding 13-PTNLD9-TUMOR_peak_29899 chr2 223383451 223384072 + 11.62718 NA intron (NM_152386, intron 2 of 4) intron (NM_152386, intron 2 of 4) 94439 NM_152386 130367 Hs.591604 NM_152386 SGPP2 SPP2 sphingosine-1-phosphate phosphatase 2 protein-coding 13-PTNLD9-TUMOR_peak_53019 chr9 33161109 33161297 + 11.62718 NA intron (NM_001497, intron 1 of 5) intron (NM_001497, intron 1 of 5) -5743 NR_108110 101929639 Hs.545818 NR_108108 B4GALT1-AS1 - B4GALT1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_52023 chr8 129339266 129339444 + 11.62718 NA Intergenic Intergenic 176993 NR_031613 100302281 NR_031613 miRBase:MI0006341 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 13-PTNLD9-TUMOR_peak_22929 chr18 33310663 33311196 + 11.62718 NA Intergenic LTR18B|LTR|ERVL 76396 NM_020474 2589 Hs.514806 NM_020474 HPRD:03781 GALNT1 GALNAC-T1 polypeptide N-acetylgalactosaminyltransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_44515 chr6 31105399 31105545 + 11.62718 NA 3' UTR (NM_014069, exon 2 of 2) 3' UTR (NM_014069, exon 2 of 2) 1655 NM_014069 170680 Hs.146824 NM_014069 HPRD:17921 PSORS1C2 C6orf17|SPR1 psoriasis susceptibility 1 candidate 2 protein-coding 13-PTNLD9-TUMOR_peak_36925 chr3 182983853 182984026 + 11.62718 NA intron (NM_032047, intron 1 of 1) intron (NM_032047, intron 1 of 1) 12907 NM_032047 84002 Hs.718506 NM_032047 HPRD:12511 B3GNT5 B3GN-T5|beta3Gn-T5 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 protein-coding 13-PTNLD9-TUMOR_peak_2219 chr1 76734978 76735102 + 11.62718 NA intron (NM_152996, intron 1 of 4) intron (NM_152996, intron 1 of 4) 194651 NM_001160011 256435 Hs.337040 NM_152996 ST6GALNAC3 PRO7177|SIAT7C|ST6GALNACIII|STY ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding 13-PTNLD9-TUMOR_peak_17071 chr15 40447405 40447551 + 11.62718 NA Intergenic Intergenic -5732 NM_001211 701 Hs.513645 NM_001211 HPRD:04176 BUB1B BUB1beta|BUBR1|Bub1A|MAD3L|MVA1|SSK1|hBUBR1 BUB1 mitotic checkpoint serine/threonine kinase B protein-coding 13-PTNLD9-TUMOR_peak_28966 chr2 165697737 165698055 + 11.62718 NA promoter-TSS (NM_014900) promoter-TSS (NM_014900) 32 NM_014900 22837 Hs.470457 NM_014900 HPRD:10844 COBLL1 COBLR1 cordon-bleu WH2 repeat protein-like 1 protein-coding 13-PTNLD9-TUMOR_peak_44459 chr6 30540129 30540271 + 11.62718 NA intron (NM_001090, intron 1 of 23).3 L2c|LINE|L2 1030 NM_001025091 23 Hs.655285 NM_001090 HPRD:09139 ABCF1 ABC27|ABC50 ATP-binding cassette, sub-family F (GCN20), member 1 protein-coding 13-PTNLD9-TUMOR_peak_4544 chr1 178602306 178602478 + 11.62718 NA Intergenic Intergenic -44492 NR_039622 100616328 NR_039622 miRBase:MI0016763 MIR4424 - microRNA 4424 ncRNA 13-PTNLD9-TUMOR_peak_43199 chr5 176881499 176881698 + 11.61610 NA intron (NM_030567, intron 2 of 3) CpG 6272 NM_001174102 80758 Hs.534492 NM_030567 HPRD:15186 PRR7 - proline rich 7 (synaptic) protein-coding 13-PTNLD9-TUMOR_peak_26558 chr2 36579959 36580091 + 11.61610 NA Intergenic Intergenic 2688 NR_037631 100288911 Hs.432924 NR_037631 LOC100288911 - uncharacterized LOC100288911 ncRNA 13-PTNLD9-TUMOR_peak_54909 chr9 132646777 132646936 + 11.61610 NA Intergenic Intergenic 14972 NR_106914 102466750 NR_106914 MIR6855 hsa-mir-6855 microRNA 6855 ncRNA 13-PTNLD9-TUMOR_peak_30444 chr20 12990402 12990578 + 11.61610 NA intron (NM_018327, intron 1 of 11) intron (NM_018327, intron 1 of 11) 863 NM_018327 55304 Hs.425023 NM_018327 HPRD:12765 SPTLC3 C20orf38|LCB2B|LCB3|SPT3|SPTLC2L|dJ718P11|dJ718P11.1|hLCB2b serine palmitoyltransferase, long chain base subunit 3 protein-coding 13-PTNLD9-TUMOR_peak_35214 chr3 101567829 101568034 + 11.61610 NA promoter-TSS (NM_031419) promoter-TSS (NM_031419) -427 NM_031419 64332 Hs.319171 NM_031419 HPRD:09217 NFKBIZ IKBZ|INAP|MAIL nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta protein-coding 13-PTNLD9-TUMOR_peak_22171 chr17 76397050 76397210 + 11.61610 NA intron (NR_111989, intron 5 of 8) intron (NR_111989, intron 5 of 8) 22431 NM_024419 9489 Hs.654671 NM_024419 HPRD:17841 PGS1 - phosphatidylglycerophosphate synthase 1 protein-coding 13-PTNLD9-TUMOR_peak_43152 chr5 175626195 175626592 + 11.61610 NA promoter-TSS (NR_036494) promoter-TSS (NR_036494) -95 NR_036494 643201 Hs.390285 NR_036494 ENSG00000248596 LOC643201 - centrosomal protein 192kDa pseudogene pseudo 13-PTNLD9-TUMOR_peak_32327 chr21 40177419 40177595 + 11.60692 NA promoter-TSS (NM_005239) promoter-TSS (NM_005239) -248 NM_005239 2114 Hs.644231 NM_005239 HPRD:01263 ETS2 ETS2IT1 v-ets avian erythroblastosis virus E26 oncogene homolog 2 protein-coding 13-PTNLD9-TUMOR_peak_32894 chr22 22752007 22752201 + 11.60692 NA Intergenic Intergenic 99641 NR_027293 96610 Hs.449601 NM_080926 HPRD:14302 BMS1P20 - BMS1 pseudogene 20 pseudo 13-PTNLD9-TUMOR_peak_51899 chr8 126340753 126340996 + 11.60692 NA intron (NM_173685, intron 5 of 7) intron (NM_173685, intron 5 of 7) -101689 NM_025195 10221 Hs.444947 NM_025195 HPRD:09863 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 13-PTNLD9-TUMOR_peak_11424 chr11 120177323 120177514 + 11.60692 NA intron (NM_014352, intron 8 of 12) intron (NM_014352, intron 8 of 12) -18420 NM_174926 219902 Hs.643516 NM_174926 HPRD:14461 TMEM136 - transmembrane protein 136 protein-coding 13-PTNLD9-TUMOR_peak_18051 chr15 98635225 98635322 + 11.60692 NA Intergenic L1PA3|LINE|L1 -3291 NR_120325 101927332 NR_120325 LOC101927332 - uncharacterized LOC101927332 ncRNA 13-PTNLD9-TUMOR_peak_18224 chr16 2083490 2083787 + 11.60692 NA intron (NM_001252073, intron 1 of 5) intron (NM_001252073, intron 1 of 5) 373 NM_001252076 9351 Hs.440896 NM_004785 HPRD:05946 SLC9A3R2 E3KARP|NHE3RF2|NHERF-2|NHERF2|OCTS2|SIP-1|SIP1|TKA-1 solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 regulator 2 protein-coding 13-PTNLD9-TUMOR_peak_22148 chr17 76247157 76247486 + 11.60692 NA Intergenic Intergenic 19930 NM_001204212 283999 Hs.632228 NM_001145529 ENSG00000204278 TMEM235 ARGM1 transmembrane protein 235 protein-coding 13-PTNLD9-TUMOR_peak_3992 chr1 157512588 157512728 + 11.60692 NA exon (NM_031281, exon 6 of 17) exon (NM_031281, exon 6 of 17) 9652 NM_031281 83416 Hs.415950 NM_031281 HPRD:16169 FCRL5 BXMAS1|CD307|CD307e|FCRH5|IRTA2|PRO820 Fc receptor-like 5 protein-coding 13-PTNLD9-TUMOR_peak_17747 chr15 79152399 79152679 + 11.60692 NA Intergenic Intergenic -12584 NM_001265603 10933 Hs.374503 NM_006791 HPRD:09532 MORF4L1 Eaf3|HsT17725|MEAF3|MORFRG15|MRG15|S863-6 mortality factor 4 like 1 protein-coding 13-PTNLD9-TUMOR_peak_23473 chr18 73350276 73350532 + 11.60692 NA Intergenic Intergenic -210815 NM_001037331 284274 Hs.666744 NM_001037331 SMIM21 C18orf62 small integral membrane protein 21 protein-coding 13-PTNLD9-TUMOR_peak_28354 chr2 127415597 127415810 + 11.60692 NA intron (NM_016815, intron 1 of 2) intron (NM_016815, intron 1 of 2) 2192 NM_002101 2995 Hs.59138 NM_002101 HPRD:00193 GYPC CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 13-PTNLD9-TUMOR_peak_25704 chr19 56037710 56038139 + 11.60692 NA Intergenic Intergenic 10511 NM_001101401 646643 Hs.532676 NM_001101401 ENSG00000187550 SBK2 SGK069 SH3 domain binding kinase family, member 2 protein-coding 13-PTNLD9-TUMOR_peak_34838 chr3 64174807 64175167 + 11.60501 NA intron (NR_046702, intron 1 of 3) intron (NR_046702, intron 1 of 3) 1767 NR_046702 100874243 Hs.670840 NR_046702 ENSG00000226017 PRICKLE2-AS3 - PRICKLE2 antisense RNA 3 ncRNA 13-PTNLD9-TUMOR_peak_54129 chr9 99676813 99676983 + 11.60501 NA Intergenic Zaphod|DNA|hAT-Tip100 5541 NR_028350 441454 Hs.653264 NR_028350 LOC441454 - prothymosin, alpha pseudogene pseudo 13-PTNLD9-TUMOR_peak_26664 chr2 39858907 39859166 + 11.60501 NA Intergenic Intergenic -33602 NM_001167959 130733 Hs.40808 NM_152390 HPRD:14577 TMEM178A TMEM178 transmembrane protein 178A protein-coding 13-PTNLD9-TUMOR_peak_49804 chr7 155546167 155546381 + 11.60501 NA intron (NM_053043, intron 14 of 17) intron (NM_053043, intron 14 of 17) 58693 NM_000193 6469 Hs.164537 NM_000193 SHH HHG1|HLP3|HPE3|MCOPCB5|SMMCI|TPT|TPTPS sonic hedgehog protein-coding 13-PTNLD9-TUMOR_peak_42241 chr5 138060880 138061325 + 11.60501 NA Intergenic Intergenic -27983 NM_001290309 1495 Hs.445981 NM_001903 HPRD:00285 CTNNA1 CAP102 catenin (cadherin-associated protein), alpha 1, 102kDa protein-coding 13-PTNLD9-TUMOR_peak_8242 chr10 104990940 104991326 + 11.60501 NA Intergenic Intergenic -14511 NM_001143909 729020 Hs.458437 NM_001143909 ENSG00000235376 RPEL1 - ribulose-5-phosphate-3-epimerase-like 1 protein-coding 13-PTNLD9-TUMOR_peak_31808 chr20 62176568 62176752 + 11.60115 NA intron (NM_080823, intron 1 of 7) intron (NM_080823, intron 1 of 7) 2197 NM_080823 6725 NM_080823 HPRD:10250 SRMS C20orf148|SRM|dJ697K14.1 src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites protein-coding 13-PTNLD9-TUMOR_peak_49191 chr7 134298621 134299091 + 11.60115 NA Intergenic L3|LINE|CR1 -32675 NM_001724 669 Hs.198365 NM_001724 HPRD:01961 BPGM DPGM 2,3-bisphosphoglycerate mutase protein-coding 13-PTNLD9-TUMOR_peak_20064 chr16 88278803 88279380 + 11.59931 NA Intergenic Intergenic 51204 NR_110944 101928880 Hs.634835 NR_110944 ENSG00000260420 LOC101928880 LA16c-444G7.2 uncharacterized LOC101928880 ncRNA 13-PTNLD9-TUMOR_peak_53496 chr9 69779250 69779363 + 11.59772 NA Intergenic Intergenic -21522 NR_121570 101928381 Hs.708686 NR_121570 LOC101928381 - uncharacterized LOC101928381 ncRNA 13-PTNLD9-TUMOR_peak_54150 chr9 100281267 100281428 + 11.59684 NA intron (NM_003275, intron 1 of 9) intron (NM_003275, intron 1 of 9) 17426 NM_003275 7111 Hs.404289 NM_003275 HPRD:01838 TMOD1 D9S57E|ETMOD|TMOD tropomodulin 1 protein-coding 13-PTNLD9-TUMOR_peak_33203 chr22 36858164 36858485 + 11.59684 NA Intergenic Intergenic 19363 NM_012473 25828 Hs.211929 NM_012473 HPRD:07161 TXN2 MT-TRX|MTRX|TRX2 thioredoxin 2 protein-coding 13-PTNLD9-TUMOR_peak_4232 chr1 164740943 164741206 + 11.59589 NA intron (NR_038072, intron 1 of 3) intron (NR_038072, intron 1 of 3) 2804 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 13-PTNLD9-TUMOR_peak_2627 chr1 100113795 100113943 + 11.59589 NA intron (NM_017734, intron 1 of 7) intron (NM_017734, intron 1 of 7) 2438 NM_017734 54873 Hs.483993 NM_017734 HPRD:06673 PALMD C1orf11|PALML palmdelphin protein-coding 13-PTNLD9-TUMOR_peak_44190 chr6 26020898 26021127 + 11.59085 NA promoter-TSS (NM_003538) promoter-TSS (NM_003538) 294 NM_003529 8350 Hs.546315 NM_003529 HPRD:04155 HIST1H3A H3/A|H3FA histone cluster 1, H3a protein-coding 13-PTNLD9-TUMOR_peak_53488 chr9 69659738 69659933 + 11.58089 NA intron (NR_024443, intron 3 of 3) intron (NR_024443, intron 3 of 3) 8474 NR_024443 100133920 Hs.645503 NR_024443 LOC100133920 - uncharacterized LOC100133920 ncRNA 13-PTNLD9-TUMOR_peak_33626 chr3 7724635 7724837 + 11.57973 NA intron (NM_000844, intron 9 of 9) MIRb|SINE|MIR -147765 NR_046606 100873937 Hs.570608 NR_046606 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_42049 chr5 132010384 132010822 + 11.57973 NA intron (NM_000589, intron 2 of 3) intron (NM_000589, intron 2 of 3) 925 NM_000589 3565 Hs.73917 NM_000589 HPRD:00989 IL4 BCGF-1|BCGF1|BSF-1|BSF1|IL-4 interleukin 4 protein-coding 13-PTNLD9-TUMOR_peak_16405 chr14 89507209 89507358 + 11.57973 NA Intergenic Intergenic 216786 NM_001288782 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 13-PTNLD9-TUMOR_peak_19825 chr16 78812183 78812501 + 11.57973 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 679032 NR_120435 51741 Hs.461453 NM_016373 HPRD:05501 WWOX D16S432E|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 13-PTNLD9-TUMOR_peak_6662 chr10 22937640 22937874 + 11.57973 NA intron (NM_005028, intron 1 of 9) intron (NM_005028, intron 1 of 9) 65746 NM_005028 5305 Hs.57079 NM_005028 HPRD:11931 PIP4K2A PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK phosphatidylinositol-5-phosphate 4-kinase, type II, alpha protein-coding 13-PTNLD9-TUMOR_peak_33930 chr3 15342316 15342467 + 11.57973 NA intron (NM_001018009, intron 3 of 8) intron (NM_001018009, intron 3 of 8) 31745 NM_004844 9467 Hs.257761 NM_004844 HPRD:12030 SH3BP5 SAB|SH3BP-5 SH3-domain binding protein 5 (BTK-associated) protein-coding 13-PTNLD9-TUMOR_peak_32944 chr22 24397306 24397464 + 11.57973 NA intron (NR_003082, intron 2 of 4) intron (NR_003082, intron 2 of 4) 4514 NR_003082 653399 Hs.652398 NR_003082 ENSG00000239334 GSTTP2 - glutathione S-transferase theta pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_2290 chr1 83616964 83617176 + 11.57973 NA Intergenic Intergenic -165179 NR_110633 101927498 NR_110632 ENSG00000236268 LINC01361 - long intergenic non-protein coding RNA 1361 ncRNA 13-PTNLD9-TUMOR_peak_52195 chr8 134931688 134932110 + 11.57973 NA Intergenic Intergenic 33160 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 13-PTNLD9-TUMOR_peak_27734 chr2 97303578 97303818 + 11.57973 NA promoter-TSS (NR_047658) promoter-TSS (NR_047658) 99 NR_047658 55683 Hs.516341 NM_017991 HPRD:07643 KANSL3 KIAA1310|NSL3|Rcd1 KAT8 regulatory NSL complex subunit 3 protein-coding 13-PTNLD9-TUMOR_peak_28691 chr2 149933501 149933635 + 11.57973 NA intron (NM_177964, intron 1 of 6) intron (NM_177964, intron 1 of 6) 38587 NM_177964 130576 Hs.357567 NM_177964 HPRD:14045 LYPD6B CT116|LYPD7 LY6/PLAUR domain containing 6B protein-coding 13-PTNLD9-TUMOR_peak_22190 chr17 76954762 76954963 + 11.57973 NA Intergenic Intergenic 21199 NM_005567 3959 Hs.514535 NM_005567 HPRD:02796 LGALS3BP 90K|BTBD17B|CyCAP|M2BP|MAC-2-BP|TANGO10B|gp90 lectin, galactoside-binding, soluble, 3 binding protein protein-coding 13-PTNLD9-TUMOR_peak_42270 chr5 138897547 138897961 + 11.57861 NA Intergenic CpG -35411 NM_198282 340061 Hs.379754 NM_198282 TMEM173 ERIS|MITA|MPYS|NET23|SAVI|STING transmembrane protein 173 protein-coding 13-PTNLD9-TUMOR_peak_20677 chr17 21249453 21249723 + 11.57324 NA Intergenic L1MB5|LINE|L1 -30111 NM_021012 3768 Hs.200629 NM_021012 HPRD:09083 KCNJ12 IRK-2|IRK2|KCNJN1|Kir2.2|Kir2.2v|hIRK|hIRK1|hkir2.2x|kcnj12x potassium inwardly-rectifying channel, subfamily J, member 12 protein-coding 13-PTNLD9-TUMOR_peak_307 chr1 9046380 9046586 + 11.57205 NA Intergenic Intergenic 39921 NM_207420 155184 Hs.531239 NM_207420 HPRD:15365 SLC2A7 GLUT7 solute carrier family 2 (facilitated glucose transporter), member 7 protein-coding 13-PTNLD9-TUMOR_peak_43633 chr6 6547348 6547533 + 11.57205 NA intron (NR_026970, intron 3 of 7) intron (NR_026970, intron 3 of 7) -41494 NM_004271 9450 Hs.653138 NM_004271 LY86 MD-1|MMD-1|dJ80N2.1 lymphocyte antigen 86 protein-coding 13-PTNLD9-TUMOR_peak_2645 chr1 100779127 100779281 + 11.57205 NA Intergenic L1MC1|LINE|L1 32407 NR_030279 693138 NR_030279 MIR553 MIRN553|hsa-mir-553 microRNA 553 ncRNA 13-PTNLD9-TUMOR_peak_13864 chr12 112007918 112008125 + 11.57205 NA intron (NM_002973, intron 1 of 24) L3|LINE|CR1 29459 NM_002973 6311 Hs.76253 NM_002973 HPRD:03307 ATXN2 ASL13|ATX2|SCA2|TNRC13 ataxin 2 protein-coding 13-PTNLD9-TUMOR_peak_54092 chr9 98145835 98145949 + 11.57205 NA Intergenic Intergenic -65901 NM_001243744 2176 Hs.494529 NM_000136 HPRD:01967 FANCC FA3|FAC|FACC Fanconi anemia, complementation group C protein-coding 13-PTNLD9-TUMOR_peak_31380 chr20 48317199 48317323 + 11.57205 NA intron (NM_004776, intron 1 of 8) MER44B|DNA|TcMar-Tigger 13160 NM_004776 9334 Hs.370487 NM_004776 HPRD:06807 B4GALT5 B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5 protein-coding 13-PTNLD9-TUMOR_peak_41216 chr5 71507046 71507414 + 11.57205 NA Intergenic Intergenic 41936 NR_039967 100616377 NR_039967 MIR4803 - microRNA 4803 ncRNA 13-PTNLD9-TUMOR_peak_18949 chr16 29691323 29691476 + 11.57205 NA intron (NM_014298, intron 1 of 3) AluY|SINE|Alu 958 NM_014298 23475 Hs.513484 NM_014298 QPRT HEL-S-90n|QPRTase quinolinate phosphoribosyltransferase protein-coding 13-PTNLD9-TUMOR_peak_12704 chr12 49259616 49259878 + 11.57205 NA promoter-TSS (NM_014470) promoter-TSS (NM_014470) -94 NM_014470 27289 Hs.124940 NM_014470 HPRD:12357 RND1 ARHS|RHO6|RHOS Rho family GTPase 1 protein-coding 13-PTNLD9-TUMOR_peak_50393 chr8 26162567 26162713 + 11.57205 NA intron (NM_002717, intron 2 of 9) L1MB2|LINE|L1 11908 NM_001177591 5520 Hs.146339 NM_002717 HPRD:09223 PPP2R2A B55A|B55ALPHA|PR52A|PR55A protein phosphatase 2, regulatory subunit B, alpha protein-coding 13-PTNLD9-TUMOR_peak_11598 chr11 128377270 128377399 + 11.57205 NA intron (NM_001143820, intron 3 of 9) intron (NM_001143820, intron 3 of 9) 14871 NM_005238 2113 Hs.369438 NM_005238 HPRD:01260 ETS1 ETS-1|EWSR2|p54 v-ets avian erythroblastosis virus E26 oncogene homolog 1 protein-coding 13-PTNLD9-TUMOR_peak_30008 chr2 232477257 232477430 + 11.56658 NA Intergenic Intergenic 19768 NM_152614 165100 Hs.98104 NM_152614 HPRD:14602 C2orf57 - chromosome 2 open reading frame 57 protein-coding 13-PTNLD9-TUMOR_peak_34501 chr3 48507496 48507675 + 11.56658 NA TTS (NM_130384) TTS (NM_130384) 666 NM_007248 11277 Hs.707026 NM_007248 HPRD:09423 TREX1 AGS1|CRV|DRN3|HERNS three prime repair exonuclease 1 protein-coding 13-PTNLD9-TUMOR_peak_52159 chr8 134223744 134224081 + 11.56647 NA intron (NM_001204870, intron 1 of 1) intron (NM_001204870, intron 1 of 1) 20630 NM_001204869 8840 Hs.492974 NM_003882 WISP1 CCN4|WISP1c|WISP1i|WISP1tc WNT1 inducible signaling pathway protein 1 protein-coding 13-PTNLD9-TUMOR_peak_41509 chr5 90592510 90592691 + 11.56647 NA Intergenic Intergenic 17619 NR_103548 100505994 Hs.628363 NR_103548 ENSG00000248323 LUCAT1 SCAL1 lung cancer associated transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_43539 chr6 3527267 3527499 + 11.56452 NA Intergenic Intergenic -70590 NM_015482 63027 Hs.713588 NM_015482 HPRD:12904 SLC22A23 C6orf85 solute carrier family 22, member 23 protein-coding 13-PTNLD9-TUMOR_peak_5594 chr1 224820386 224820506 + 11.56452 NA intron (NM_152495, intron 1 of 5) intron (NM_152495, intron 1 of 5) 16267 NM_152495 149111 Hs.731723 NM_152495 HPRD:08799 CNIH3 CNIH-3 cornichon family AMPA receptor auxiliary protein 3 protein-coding 13-PTNLD9-TUMOR_peak_29635 chr2 206571610 206572077 + 11.56452 NA intron (NM_003872, intron 2 of 16) intron (NM_003872, intron 2 of 16) 24619 NM_201264 8828 Hs.471200 NM_003872 HPRD:03643 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 13-PTNLD9-TUMOR_peak_4953 chr1 201404559 201405021 + 11.56452 NA Intergenic Intergenic -13916 NM_003281 7135 Hs.320890 NM_003281 HPRD:01842 TNNI1 SSTNI|TNN1 troponin I type 1 (skeletal, slow) protein-coding 13-PTNLD9-TUMOR_peak_24469 chr19 19739701 19739897 + 11.56402 NA promoter-TSS (NM_004720) promoter-TSS (NM_004720) -760 NM_004720 9170 Hs.122575 NM_004720 ENSG00000064547 LPAR2 EDG-4|EDG4|LPA-2|LPA2 lysophosphatidic acid receptor 2 protein-coding 13-PTNLD9-TUMOR_peak_52249 chr8 138158644 138158772 + 11.56323 NA Intergenic Intergenic 267123 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 13-PTNLD9-TUMOR_peak_19289 chr16 49621487 49621689 + 11.56323 NA intron (NM_015069, intron 5 of 7) intron (NM_015069, intron 5 of 7) 213780 NM_144602 123970 Hs.125875 NM_144602 HPRD:14560 C16orf78 - chromosome 16 open reading frame 78 protein-coding 13-PTNLD9-TUMOR_peak_14279 chr12 127153175 127153458 + 11.56323 NA intron (NR_110034, intron 1 of 2) MIR|SINE|MIR 21548 NR_110035 100996671 Hs.121392 NR_110034 LOC100996671 - uncharacterized LOC100996671 ncRNA 13-PTNLD9-TUMOR_peak_20600 chr17 18941314 18941706 + 11.56323 NA intron (NM_006613, intron 2 of 4) intron (NM_006613, intron 2 of 4) 8826 NM_006613 10750 Hs.567416 NM_006613 GRAP - GRB2-related adaptor protein protein-coding 13-PTNLD9-TUMOR_peak_13452 chr12 89556511 89556881 + 11.56323 NA Intergenic Intergenic -143227 NR_038385 728084 Hs.132563 NR_038385 ENSG00000246363 LOC728084 - uncharacterized LOC728084 ncRNA 13-PTNLD9-TUMOR_peak_30987 chr20 36815156 36815367 + 11.56323 NA Intergenic Intergenic -21561 NM_198951 7052 Hs.517033 NM_004613 HPRD:01825 TGM2 G-ALPHA-h|GNAH|HEL-S-45|TG2|TGC transglutaminase 2 protein-coding 13-PTNLD9-TUMOR_peak_35991 chr3 133635027 133635391 + 11.56323 NA Intergenic Intergenic 13447 NM_025041 80111 Hs.287691 NM_025041 HPRD:07981 C3orf36 - chromosome 3 open reading frame 36 protein-coding 13-PTNLD9-TUMOR_peak_15658 chr14 47907915 47908306 + 11.56323 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) -95661 NR_103766 161357 Hs.436380 NM_182830 HPRD:14352 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 13-PTNLD9-TUMOR_peak_32418 chr21 43619626 43619804 + 11.56323 NA promoter-TSS (NM_207627) promoter-TSS (NM_207627) -84 NM_207627 9619 Hs.124649 NM_004915 HPRD:04355 ABCG1 ABC8|WHITE1 ATP-binding cassette, sub-family G (WHITE), member 1 protein-coding 13-PTNLD9-TUMOR_peak_45937 chr6 114338391 114338635 + 11.56323 NA Intergenic HERVH-int|LTR|ERV1 45528 NM_153612 222537 Hs.645477 NM_153612 HPRD:13674 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate (glucosamine) 3-O-sulfotransferase 5 protein-coding 13-PTNLD9-TUMOR_peak_48985 chr7 128378150 128378297 + 11.54639 NA Intergenic Intergenic -1123 NM_001199672 813 Hs.7753 NM_001219 CALU - calumenin protein-coding 13-PTNLD9-TUMOR_peak_39939 chr4 183786801 183786951 + 11.54147 NA Intergenic AluJr4|SINE|Alu 51754 NM_001921 1635 Hs.183850 NM_001921 HPRD:09623 DCTD - dCMP deaminase protein-coding 13-PTNLD9-TUMOR_peak_49214 chr7 134862181 134862391 + 11.54147 NA Intergenic HERV3-int|LTR|ERV1 -6708 NM_001243751 78996 Hs.732134 NM_024033 HPRD:08333 C7orf49 MRI chromosome 7 open reading frame 49 protein-coding 13-PTNLD9-TUMOR_peak_3447 chr1 148538304 148538496 + 11.54084 NA intron (NR_104217, intron 2 of 17) intron (NR_104217, intron 2 of 17) -19788 NM_001170755 284565 Hs.523572 NM_173638 HPRD:14710 NBPF15 AB14|AG3|NBPF16 neuroblastoma breakpoint family, member 15 protein-coding 13-PTNLD9-TUMOR_peak_53944 chr9 92276489 92276637 + 11.53679 NA intron (NR_024280, intron 1 of 5) intron (NR_024280, intron 1 of 5) 21865 NR_024280 100129066 Hs.125947 NR_024280 UNQ6494 - uncharacterized LOC100129066 ncRNA 13-PTNLD9-TUMOR_peak_25247 chr19 47933428 47933659 + 11.53195 NA exon (NM_015063, exon 10 of 10) exon (NM_015063, exon 10 of 10) -10758 NM_020160 56917 Hs.380923 NM_020160 HPRD:14386 MEIS3 MRG2 Meis homeobox 3 protein-coding 13-PTNLD9-TUMOR_peak_38728 chr4 82964246 82964554 + 11.53195 NA Intergenic Intergenic 330749 NM_031369 3184 Hs.480073 NM_002138 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa) protein-coding 13-PTNLD9-TUMOR_peak_45872 chr6 109416652 109416826 + 11.53195 NA 5' UTR (NM_001271853, exon 1 of 11) 5' UTR (NM_001271853, exon 1 of 11) 383 NM_001271853 285753 Hs.632616 NM_173830 HPRD:10792 CEP57L1 C6orf182|bA487F23.2|cep57R centrosomal protein 57kDa-like 1 protein-coding 13-PTNLD9-TUMOR_peak_32790 chr22 20461124 20461274 + 11.53195 NA exon (NM_015672, exon 1 of 1) exon (NM_015672, exon 1 of 1) 587 NM_015672 85376 Hs.115429 NM_015672 ENSG00000196622 RIMBP3 RIM-BP3|RIM-BP3.1|RIM-BP3.A|RIMBP3.1|RIMBP3A RIMS binding protein 3 protein-coding 13-PTNLD9-TUMOR_peak_49775 chr7 154720402 154720621 + 11.53162 NA intron (NR_024476, intron 1 of 7) LTR48|LTR|ERV1 284 NR_024476 100132707 Hs.586358 NR_024476 ENSG00000214106 PAXIP1OS PAXIP1-AS2 PAXIP1 opposite strand ncRNA 13-PTNLD9-TUMOR_peak_33765 chr3 11227813 11228140 + 11.53162 NA intron (NM_001098212, intron 1 of 1) intron (NM_001098212, intron 1 of 1) 31762 NM_001098212 3269 Hs.1570 NM_000861 HPRD:02544 HRH1 H1-R|hisH1 histamine receptor H1 protein-coding 13-PTNLD9-TUMOR_peak_53919 chr9 91390016 91390307 + 11.53138 NA Intergenic Intergenic -29341 NR_036252 100423015 NR_036252 miRBase:MI0015898 MIR4289 - microRNA 4289 ncRNA 13-PTNLD9-TUMOR_peak_25780 chr19 58201210 58201404 + 11.53138 NA TTS (NM_001270938) TTS (NM_001270938) 7970 NM_138347 90233 Hs.109540 NM_138347 HPRD:11727 ZNF551 - zinc finger protein 551 protein-coding 13-PTNLD9-TUMOR_peak_36474 chr3 155899461 155899623 + 11.53138 NA intron (NM_003471, intron 1 of 13) L2a|LINE|L2 38791 NM_003471 7881 Hs.654519 NM_003471 HPRD:03089 KCNAB1 AKR6A3|KCNA1B|KV-BETA-1|Kvb1.3|hKvBeta3|hKvb3 potassium voltage-gated channel, shaker-related subfamily, beta member 1 protein-coding 13-PTNLD9-TUMOR_peak_9175 chr11 15096472 15096719 + 11.53138 NA intron (NM_000728, intron 2 of 4) intron (NM_000728, intron 2 of 4) 1449 NM_000728 797 Hs.534305 NM_000728 HPRD:11742 CALCB CALC2|CGRP-II|CGRP2 calcitonin-related polypeptide beta protein-coding 13-PTNLD9-TUMOR_peak_50952 chr8 55084434 55084607 + 11.53138 NA Intergenic Intergenic 36739 NM_014175 29088 Hs.18349 NM_014175 MRPL15 L15mt|MRP-L15|MRP-L7|RPML7 mitochondrial ribosomal protein L15 protein-coding 13-PTNLD9-TUMOR_peak_1155 chr1 36902441 36902737 + 11.53138 NA intron (NM_206837, intron 2 of 4) L1MC3|LINE|L1 13497 NM_145047 127700 Hs.202207 NM_145047 HPRD:16393 OSCP1 C1orf102|NOR1 organic solute carrier partner 1 protein-coding 13-PTNLD9-TUMOR_peak_46983 chr7 20147335 20147491 + 11.53138 NA intron (NR_110114, intron 1 of 5) intron (NR_110114, intron 1 of 5) 32636 NR_110114 101927668 Hs.715900 NR_110114 ENSG00000243004 LOC101927668 - uncharacterized LOC101927668 ncRNA 13-PTNLD9-TUMOR_peak_42667 chr5 150452360 150452510 + 11.52422 NA intron (NM_001252390, intron 1 of 17) intron (NM_001252390, intron 1 of 17) -7743 NM_001258455 10318 Hs.355141 NM_006058 HPRD:09216 TNIP1 ABIN-1|NAF1|VAN|nip40-1 TNFAIP3 interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_44673 chr6 33314889 33315023 + 11.52422 NA Intergenic HERVH-int|LTR|ERV1 -24163 NM_001141970 1616 Hs.336916 NM_001350 HPRD:04424 DAXX BING2|DAP6|EAP1 death-domain associated protein protein-coding 13-PTNLD9-TUMOR_peak_51854 chr8 125117162 125117350 + 11.52422 NA intron (NM_001039112, intron 39 of 40) L2a|LINE|L2 -64233 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_6382 chr10 5986480 5986725 + 11.52422 NA Intergenic Intergenic 32972 NM_002189 3601 Hs.445124 NM_002189 HPRD:03045 IL15RA CD215 interleukin 15 receptor, alpha protein-coding 13-PTNLD9-TUMOR_peak_54701 chr9 124974821 124975078 + 11.52422 NA intron (NM_001242335, intron 5 of 6) L2a|LINE|L2 9070 NM_001242335 26468 Hs.103137 NM_014368 HPRD:10498 LHX6 LHX6.1 LIM homeobox 6 protein-coding 13-PTNLD9-TUMOR_peak_1553 chr1 45182973 45183276 + 11.52422 NA intron (NM_001145636, intron 6 of 11) L2c|LINE|L2 -22366 NM_006845 11004 Hs.720061 NM_006845 HPRD:05172 KIF2C CT139|KNSL6|MCAK kinesin family member 2C protein-coding 13-PTNLD9-TUMOR_peak_35994 chr3 133727473 133727911 + 11.52422 NA intron (NM_005630, intron 1 of 13) intron (NM_005630, intron 1 of 13) 21228 NM_005630 6578 Hs.518270 NM_005630 HPRD:03269 SLCO2A1 MATR1|OATP2A1|PGT|PHOAR2|SLC21A2 solute carrier organic anion transporter family, member 2A1 protein-coding 13-PTNLD9-TUMOR_peak_31405 chr20 48703328 48703603 + 11.52422 NA intron (NM_022442, intron 2 of 3) AluY|SINE|Alu 26270 NM_001257399 7335 Hs.420529 NM_021988 ENSG00000244687 UBE2V1 CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A ubiquitin-conjugating enzyme E2 variant 1 protein-coding 13-PTNLD9-TUMOR_peak_46726 chr7 2726934 2727287 + 11.52422 NA promoter-TSS (NM_001284355) promoter-TSS (NM_001284355) -726 NM_001284355 155185 Hs.42221 NM_133463 HPRD:17232 AMZ1 - archaelysin family metallopeptidase 1 protein-coding 13-PTNLD9-TUMOR_peak_13846 chr12 111182845 111182995 + 11.52422 NA Intergenic Intergenic -2137 NM_002710 5501 Hs.79081 NM_002710 HPRD:08911 PPP1CC PP-1G|PP1C|PPP1G protein phosphatase 1, catalytic subunit, gamma isozyme protein-coding 13-PTNLD9-TUMOR_peak_6717 chr10 25007486 25007649 + 11.52422 NA intron (NM_020824, intron 2 of 25) intron (NM_020824, intron 2 of 25) 5030 NM_020824 57584 Hs.524195 NM_020824 HPRD:06445 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 13-PTNLD9-TUMOR_peak_25610 chr19 54295953 54296487 + 11.51862 NA TTS (NM_144687) TTS (NM_144687) 4261 NR_029866 442918 NR_029866 miRBase:MI0000781 MIR373 MIRN373|hsa-mir-373|miRNA373 microRNA 373 ncRNA 13-PTNLD9-TUMOR_peak_42767 chr5 155829467 155829604 + 11.51862 NA intron (NM_001128209, intron 2 of 7) LTR43|LTR|ERV1 75768 NM_000337 6444 Hs.387207 NM_000337 HPRD:03246 SGCD 35DAG|CMD1L|DAGD|SG-delta|SGCDP|SGD sarcoglycan, delta (35kDa dystrophin-associated glycoprotein) protein-coding 13-PTNLD9-TUMOR_peak_7913 chr10 86299802 86300073 + 11.51862 NA Intergenic Intergenic 114999 NM_001284242 54462 Hs.461988 NM_018999 HPRD:13832 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine-rich protein 2 protein-coding 13-PTNLD9-TUMOR_peak_18914 chr16 29155675 29155834 + 11.51862 NA Intergenic Intergenic 69591 NR_003369 653390 Hs.720348 NR_003369 ENSG00000103472 RRN3P2 - RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_33654 chr3 8705285 8705668 + 11.51862 NA Intergenic Intergenic -11712 NM_001256749 51066 Hs.736935 NM_015931 HPRD:11267 SSUH2 C3orf32|SSU-2|fls485 ssu-2 homolog (C. elegans) protein-coding 13-PTNLD9-TUMOR_peak_54512 chr9 116420377 116420486 + 11.51862 NA Intergenic Intergenic 63997 NM_001276262 5998 Hs.494875 NM_017790 HPRD:03720 RGS3 C2PA|RGP3 regulator of G-protein signaling 3 protein-coding 13-PTNLD9-TUMOR_peak_51478 chr8 103743331 103743440 + 11.51862 NA Intergenic L2a|LINE|L2 -75255 NM_005655 7071 Hs.435001 NM_005655 HPRD:03527 KLF10 EGR-alpha|EGRA|TIEG|TIEG1 Kruppel-like factor 10 protein-coding 13-PTNLD9-TUMOR_peak_25869 chr1_gl000191_random 79238 79436 + 11.51825 NA Intergenic Intergenic -29056 NM_054016 10772 Hs.3530 NM_006625 HPRD:05562 SRSF10 FUSIP1|FUSIP2|NSSR|PPP1R149|SFRS13|SFRS13A|SRp38|SRrp40|TASR|TASR1|TASR2 serine/arginine-rich splicing factor 10 protein-coding 13-PTNLD9-TUMOR_peak_5752 chr1 229160506 229160644 + 11.51825 NA Intergenic Intergenic -246234 NM_001271998 5867 Hs.296169 NM_004578 HPRD:01541 RAB4A HRES-1|HRES-1/RAB4|HRES1|RAB4 RAB4A, member RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_16109 chr14 68968533 68968771 + 11.51825 NA intron (NM_133509, intron 10 of 10) intron (NM_133509, intron 10 of 10) 291979 NM_004926 677 Hs.85155 NM_004926 HPRD:03041 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein-like 1 protein-coding 13-PTNLD9-TUMOR_peak_13083 chr12 60045289 60045528 + 11.51825 NA intron (NM_001270622, intron 1 of 5) intron (NM_001270622, intron 1 of 5) -37710 NR_073055 9194 Hs.88156 NM_004731 HPRD:06791 SLC16A7 MCT2 solute carrier family 16 (monocarboxylate transporter), member 7 protein-coding 13-PTNLD9-TUMOR_peak_26557 chr2 36567080 36567317 + 11.51825 NA Intergenic Intergenic 15515 NR_037631 100288911 Hs.432924 NR_037631 LOC100288911 - uncharacterized LOC100288911 ncRNA 13-PTNLD9-TUMOR_peak_48768 chr7 106420452 106420645 + 11.51825 NA Intergenic MER115|DNA|hAT-Tip100 -85175 NM_001282426 5294 Hs.32942 NM_002649 HPRD:03135 PIK3CG PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma protein-coding 13-PTNLD9-TUMOR_peak_53968 chr9 93563919 93564233 + 11.51825 NA promoter-TSS (NM_001174168) promoter-TSS (NM_001174168) 114 NM_001135052 6850 Hs.371720 NM_003177 HPRD:02514 SYK p72-Syk spleen tyrosine kinase protein-coding 13-PTNLD9-TUMOR_peak_18182 chr16 1047540 1047746 + 11.51825 NA Intergenic CpG 15835 NM_014587 30812 Hs.243678 NM_014587 HPRD:16175 SOX8 - SRY (sex determining region Y)-box 8 protein-coding 13-PTNLD9-TUMOR_peak_26214 chr2 17484272 17484621 + 11.51825 NA Intergenic Intergenic 215260 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 13-PTNLD9-TUMOR_peak_2067 chr1 64496202 64496352 + 11.51825 NA intron (NM_001083592, intron 2 of 6) L3|LINE|CR1 81611 NR_110666 101927034 Hs.680824 NR_110665 ENSG00000223949 ROR1-AS1 - ROR1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_12403 chr12 28722753 28723279 + 11.51825 NA Intergenic Intergenic 312883 NM_018318 55297 Hs.653125 NM_018318 HPRD:16905 CCDC91 p56 coiled-coil domain containing 91 protein-coding 13-PTNLD9-TUMOR_peak_2136 chr1 68189400 68189626 + 11.51825 NA intron (NM_018841, intron 2 of 3) intron (NM_018841, intron 2 of 3) 38653 NM_001924 1647 Hs.80409 NM_001924 HPRD:00528 GADD45A DDIT1|GADD45 growth arrest and DNA-damage-inducible, alpha protein-coding 13-PTNLD9-TUMOR_peak_10322 chr11 66738348 66738577 + 11.51825 NA Intergenic Intergenic -4292 NM_001136485 254439 Hs.232604 NM_001136485 ENSG00000173237 C11orf86 - chromosome 11 open reading frame 86 protein-coding 13-PTNLD9-TUMOR_peak_16036 chr14 65212614 65212732 + 11.51825 NA TTS (NM_001024858) TTS (NM_001024858) 39731 NR_107009 102465841 NR_107009 MIR7855 hsa-mir-7855 microRNA 7855 ncRNA 13-PTNLD9-TUMOR_peak_47161 chr7 30212727 30213021 + 11.51825 NA Intergenic Intergenic 38322 NM_152793 222166 Hs.200100 NM_152793 HPRD:07635 MTURN C7orf41|Ells1 maturin, neural progenitor differentiation regulator homolog (Xenopus) protein-coding 13-PTNLD9-TUMOR_peak_54148 chr9 100273431 100273592 + 11.51812 NA intron (NM_003275, intron 1 of 9) intron (NM_003275, intron 1 of 9) 9590 NM_003275 7111 Hs.404289 NM_003275 HPRD:01838 TMOD1 D9S57E|ETMOD|TMOD tropomodulin 1 protein-coding 13-PTNLD9-TUMOR_peak_22342 chr17 80452498 80452758 + 11.50735 NA Intergenic tRNA-Met-i|tRNA|tRNA -24966 NM_004514 3607 Hs.591140 NM_004514 HPRD:00982 FOXK2 ILF|ILF-1|ILF1 forkhead box K2 protein-coding 13-PTNLD9-TUMOR_peak_17492 chr15 67399334 67399612 + 11.50481 NA intron (NM_005902, intron 1 of 8) L2a|LINE|L2 -18581 NM_001145102 4088 Hs.727986 NM_005902 HPRD:04380 SMAD3 HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3 SMAD family member 3 protein-coding 13-PTNLD9-TUMOR_peak_32129 chr21 33251794 33251938 + 11.50481 NA intron (NM_014586, intron 1 of 10) intron (NM_014586, intron 1 of 10) 6238 NM_014586 30811 Hs.109437 NM_014586 HPRD:09410 HUNK - hormonally up-regulated Neu-associated kinase protein-coding 13-PTNLD9-TUMOR_peak_11595 chr11 128366692 128367259 + 11.50481 NA intron (NM_001143820, intron 3 of 9) intron (NM_001143820, intron 3 of 9) 25230 NM_005238 2113 Hs.369438 NM_005238 HPRD:01260 ETS1 ETS-1|EWSR2|p54 v-ets avian erythroblastosis virus E26 oncogene homolog 1 protein-coding 13-PTNLD9-TUMOR_peak_45174 chr6 45575594 45575878 + 11.50481 NA Intergenic Intergenic 185422 NM_001278478 860 Hs.535845 NM_004348 HPRD:02566 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA runt-related transcription factor 2 protein-coding 13-PTNLD9-TUMOR_peak_24369 chr19 18117921 18118081 + 11.50011 NA promoter-TSS (NM_015683) promoter-TSS (NM_015683) -976 NM_015683 27106 Hs.515249 NM_015683 HPRD:12492 ARRDC2 CLONE24945 arrestin domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_8865 chr11 3602274 3602599 + 11.49828 NA Intergenic CpG -45254 NR_002720 7221 Hs.131910 NR_002720 ENSG00000182048 TRPC2 - transient receptor potential cation channel, subfamily C, member 2, pseudogene pseudo 13-PTNLD9-TUMOR_peak_11162 chr11 109963254 109963574 + 11.49828 NA promoter-TSS (NM_033390) promoter-TSS (NM_033390) -673 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 13-PTNLD9-TUMOR_peak_18104 chr15 101668134 101668256 + 11.48379 NA Intergenic Intergenic 123942 NM_014918 22856 Hs.110488 NM_014918 HPRD:10493 CHSY1 CHSY|CSS1|ChSy-1|TPBS chondroitin sulfate synthase 1 protein-coding 13-PTNLD9-TUMOR_peak_41383 chr5 78442177 78442330 + 11.48379 NA Intergenic Intergenic 34649 NM_001713 635 Hs.80756 NM_001713 HPRD:04200 BHMT BHMT1|HEL-S-61p betaine--homocysteine S-methyltransferase protein-coding 13-PTNLD9-TUMOR_peak_41466 chr5 86564261 86564469 + 11.48379 NA promoter-TSS (NM_022650) promoter-TSS (NM_022650) 295 NM_002890 5921 Hs.664080 NM_002890 HPRD:00745 RASA1 CM-AVM|CMAVM|GAP|PKWS|RASA|RASGAP|p120GAP|p120RASGAP RAS p21 protein activator (GTPase activating protein) 1 protein-coding 13-PTNLD9-TUMOR_peak_24367 chr19 18107788 18107888 + 11.48379 NA intron (NM_002248, intron 10 of 10) intron (NM_002248, intron 10 of 10) -4103 NM_001025604 27106 Hs.515249 NM_015683 HPRD:12492 ARRDC2 CLONE24945 arrestin domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_33071 chr22 30018158 30018283 + 11.48379 NA intron (NM_181831, intron 1 of 14) intron (NM_181831, intron 1 of 14) 18675 NM_181832 4771 Hs.187898 NM_000268 HPRD:06980 NF2 ACN|BANF|SCH neurofibromin 2 (merlin) protein-coding 13-PTNLD9-TUMOR_peak_35349 chr3 111642307 111642466 + 11.48379 NA intron (NM_001134437, intron 6 of 17) L2b|LINE|L2 -55337 NM_018394 55347 Hs.477115 NM_018394 HPRD:07751 ABHD10 - abhydrolase domain containing 10 protein-coding 13-PTNLD9-TUMOR_peak_7225 chr10 46983751 46983912 + 11.48379 NA Intergenic MLT1M|LTR|ERVL-MaLR -9715 NM_014696 9721 Hs.523375 NM_014696 GPRIN2 GRIN2|KIAA0514 G protein regulated inducer of neurite outgrowth 2 protein-coding 13-PTNLD9-TUMOR_peak_31281 chr20 46067601 46068035 + 11.48288 NA Intergenic Intergenic -62783 NM_001174087 8202 Hs.592142 NM_006534 HPRD:03570 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 13-PTNLD9-TUMOR_peak_45836 chr6 107194656 107194866 + 11.48288 NA intron (NR_033557, intron 1 of 6) intron (NR_033557, intron 1 of 6) 40539 NR_033557 100422737 Hs.634681 NR_033557 ENSG00000235142 LOC100422737 - uncharacterized LOC100422737 ncRNA 13-PTNLD9-TUMOR_peak_32371 chr21 42003072 42003334 + 11.48288 NA promoter-TSS (NR_046774) promoter-TSS (NR_046774) -510 NR_046774 100874326 Hs.679746 NR_046774 DSCAM-IT1 zag4 DSCAM intronic transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_21711 chr17 60796019 60796151 + 11.48288 NA intron (NM_001100875, intron 8 of 10) intron (NM_001100875, intron 8 of 10) -2773 NR_036146 100422923 NR_036146 MIR548W - microRNA 548w ncRNA 13-PTNLD9-TUMOR_peak_17509 chr15 68234103 68234244 + 11.48288 NA Intergenic Intergenic -101790 NR_125730 103625684 NR_125730 RNU6-2 U6-2 RNA, U6 small nuclear 2 snRNA 13-PTNLD9-TUMOR_peak_33540 chr3 1237694 1237870 + 11.48288 NA intron (NM_001289080, intron 2 of 22) intron (NM_001289080, intron 2 of 22) 103440 NM_001289081 27255 Hs.387300 NM_014461 HPRD:06242 CNTN6 NB3 contactin 6 protein-coding 13-PTNLD9-TUMOR_peak_33798 chr3 12549942 12550412 + 11.48288 NA intron (NM_001145394, intron 7 of 12) intron (NM_001145394, intron 7 of 12) 24167 NM_001145392 80746 Hs.335550 NM_025265 HPRD:10576 TSEN2 PCH2B|SEN2|SEN2L TSEN2 tRNA splicing endonuclease subunit protein-coding 13-PTNLD9-TUMOR_peak_33819 chr3 12936237 12936485 + 11.48288 NA Intergenic Intergenic -53280 NM_001007073 6161 Hs.265174 NM_000994 HPRD:17995 RPL32 L32 ribosomal protein L32 protein-coding 13-PTNLD9-TUMOR_peak_43169 chr5 176211302 176211447 + 11.48288 NA Intergenic MLT1K|LTR|ERVL-MaLR -26186 NM_133369 90249 Hs.33191 NM_133369 ENSG00000113763 UNC5A UNC5H1 unc-5 homolog A (C. elegans) protein-coding 13-PTNLD9-TUMOR_peak_6840 chr10 30872707 30872948 + 11.48288 NA Intergenic Intergenic 45820 NM_183058 119180 Hs.522610 NM_183058 HPRD:14337 LYZL2 - lysozyme-like 2 protein-coding 13-PTNLD9-TUMOR_peak_25783 chr19 58310666 58310894 + 11.48288 NA Intergenic LTR10C|LTR|ERV1 15501 NM_024762 79818 Hs.560727 NM_024762 HPRD:15835 ZNF552 - zinc finger protein 552 protein-coding 13-PTNLD9-TUMOR_peak_56229 chrX 87462923 87463022 + 11.48288 NA Intergenic L1PA2|LINE|L1 -539254 NM_033048 53336 Hs.458292 NM_033048 HPRD:06474 CPXCR1 CT77 CPX chromosome region, candidate 1 protein-coding 13-PTNLD9-TUMOR_peak_16975 chr15 33271943 33272192 + 11.48288 NA intron (NM_001277313, intron 7 of 20) intron (NM_001277313, intron 7 of 20) 88166 NM_001103184 342184 Hs.657649 NM_198500 HPRD:07031 FMN1 FMN|LD formin 1 protein-coding 13-PTNLD9-TUMOR_peak_42978 chr5 170845815 170845962 + 11.48109 NA promoter-TSS (NM_003862) promoter-TSS (NM_003862) -779 NM_003862 8817 Hs.87191 NM_003862 HPRD:04766 FGF18 FGF-18|ZFGF5 fibroblast growth factor 18 protein-coding 13-PTNLD9-TUMOR_peak_35498 chr3 119298248 119298791 + 11.47760 NA 5' UTR (NM_001125, exon 1 of 5) 5' UTR (NM_001125, exon 1 of 5) 239 NM_001291950 141 Hs.99884 NM_001125 HPRD:04359 ADPRH ARH1 ADP-ribosylarginine hydrolase protein-coding 13-PTNLD9-TUMOR_peak_4691 chr1 183134182 183134360 + 11.47760 NA Intergenic Intergenic -20903 NM_005562 3918 Hs.591484 NM_005562 HPRD:01031 LAMC2 B2T|BM600|CSF|EBR2|EBR2A|LAMB2T|LAMNB2 laminin, gamma 2 protein-coding 13-PTNLD9-TUMOR_peak_42067 chr5 132625811 132625955 + 11.47477 NA intron (NM_015082, intron 6 of 15) intron (NM_015082, intron 6 of 15) 137515 NR_031621 100302134 NR_031621 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 13-PTNLD9-TUMOR_peak_17723 chr15 78180301 78180443 + 11.47477 NA Intergenic Intergenic 38816 NR_027024 645752 Hs.546408 NR_027024 LOC645752 - golgin A6 family, member A pseudogene pseudo 13-PTNLD9-TUMOR_peak_32913 chr22 23606525 23607037 + 11.47477 NA non-coding (NR_033408, exon 1 of 1) non-coding (NR_033408, exon 1 of 1) 1827 NR_033408 26226 Hs.729589 NR_033408 FBXW4P1 FBW3|FBXW3|SHFM3P1 F-box and WD repeat domain containing 4 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_46202 chr6 144537292 144537810 + 11.47477 NA Intergenic CpG 65897 NM_003764 8676 Hs.118958 NM_003764 STX11 FHL4|HLH4|HPLH4 syntaxin 11 protein-coding 13-PTNLD9-TUMOR_peak_54599 chr9 119674269 119674400 + 11.47477 NA intron (NM_014010, intron 9 of 21) intron (NM_014010, intron 9 of 21) 224753 NM_012210 22954 Hs.591910 NM_012210 HPRD:03797 TRIM32 BBS11|HT2A|LGMD2H|TATIP tripartite motif containing 32 protein-coding 13-PTNLD9-TUMOR_peak_10069 chr11 62346837 62347002 + 11.47477 NA intron (NM_022830, intron 4 of 8) L1MC4|LINE|L1 -5459 NM_001404 1937 Hs.144835 NM_001404 HPRD:11745 EEF1G EF1G|GIG35 eukaryotic translation elongation factor 1 gamma protein-coding 13-PTNLD9-TUMOR_peak_29882 chr2 220549863 220550086 + 11.47477 NA Intergenic MER61B|LTR|ERV1 57682 NR_048551 6508 Hs.1176 NM_005070 HPRD:00109 SLC4A3 AE3|SLC2C solute carrier family 4 (anion exchanger), member 3 protein-coding 13-PTNLD9-TUMOR_peak_33867 chr3 13927054 13927163 + 11.47477 NA Intergenic Intergenic -5490 NM_004625 7476 Hs.72290 NM_004625 WNT7A - wingless-type MMTV integration site family, member 7A protein-coding 13-PTNLD9-TUMOR_peak_4946 chr1 201327773 201327937 + 11.47477 NA TTS (NM_001001430) TTS (NM_001001430) 18973 NM_001276346 7139 Hs.533613 NM_000364 HPRD:01844 TNNT2 CMD1D|CMH2|CMPD2|LVNC6|RCM3|TnTC|cTnT troponin T type 2 (cardiac) protein-coding 13-PTNLD9-TUMOR_peak_27090 chr2 65103573 65103770 + 11.47477 NA Intergenic Intergenic -12906 NR_110224 101927438 Hs.580313 NR_110224 LOC101927438 - uncharacterized LOC101927438 ncRNA 13-PTNLD9-TUMOR_peak_42991 chr5 171042353 171042497 + 11.47477 NA Intergenic Intergenic -170451 NM_001289970 644994 Hs.591740 NM_001289970 SMIM23 C5orf50 small integral membrane protein 23 protein-coding 13-PTNLD9-TUMOR_peak_1364 chr1 41942485 41942775 + 11.46832 NA Intergenic Intergenic 7714 NM_001956 1907 Hs.1407 NM_001956 HPRD:07173 EDN2 ET2|PPET2 endothelin 2 protein-coding 13-PTNLD9-TUMOR_peak_21053 chr17 39811971 39812239 + 11.46832 NA Intergenic Intergenic -15654 NR_033415 284116 Hs.725790 NR_033415 ENSG00000214514 KRT42P - keratin 42 pseudogene pseudo 13-PTNLD9-TUMOR_peak_45128 chr6 44026330 44026550 + 11.46810 NA Intergenic Intergenic 58103 NM_153246 221416 Hs.531926 NM_153246 HPRD:14640 C6orf223 - chromosome 6 open reading frame 223 protein-coding 13-PTNLD9-TUMOR_peak_4965 chr1 201463527 201463720 + 11.46810 NA intron (NM_001193570, intron 2 of 5) intron (NM_001193570, intron 2 of 5) 2078 NM_001193572 1465 Hs.108080 NM_004078 HPRD:00470 CSRP1 CRP|CRP1|CSRP|CYRP|D1S181E|HEL-141 cysteine and glycine-rich protein 1 protein-coding 13-PTNLD9-TUMOR_peak_13759 chr12 109117024 109117358 + 11.46425 NA intron (NM_014325, intron 1 of 10) intron (NM_014325, intron 1 of 10) 7428 NM_001276471 23603 Hs.330384 NM_014325 HPRD:09244 CORO1C HCRNN4 coronin, actin binding protein, 1C protein-coding 13-PTNLD9-TUMOR_peak_45102 chr6 43691701 43691833 + 11.46425 NA Intergenic Intergenic -36218 NM_018135 55168 Hs.520149 NM_018135 HPRD:14780 MRPS18A HumanS18b|MRP-S18-3|MRPS18-3|S18bmt mitochondrial ribosomal protein S18A protein-coding 13-PTNLD9-TUMOR_peak_10953 chr11 94801795 94802003 + 11.46425 NA non-coding (NR_103726, exon 2 of 2) non-coding (NR_103726, exon 2 of 2) 1858 NR_103726 10929 Hs.476680 NM_032102 SRSF8 DSM-1|SFRS2B|SRP46 serine/arginine-rich splicing factor 8 protein-coding 13-PTNLD9-TUMOR_peak_18766 chr16 22618050 22618286 + 11.46425 NA Intergenic MLT1J|LTR|ERVL-MaLR 61149 NR_003676 653786 Hs.564945 NR_003676 ENSG00000257838 LOC653786 - otoancorin pseudogene pseudo 13-PTNLD9-TUMOR_peak_41590 chr5 97071019 97071451 + 11.46425 NA Intergenic MLT1H-int|LTR|ERVL-MaLR 230835 NR_105028 102546227 Hs.582516 NR_105028 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 13-PTNLD9-TUMOR_peak_14161 chr12 123356665 123356851 + 11.46425 NA intron (NM_024667, intron 1 of 3) intron (NM_024667, intron 1 of 3) 23954 NM_024667 79720 Hs.507162 NM_024667 HPRD:07794 VPS37B - vacuolar protein sorting 37 homolog B (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_11542 chr11 125985924 125986077 + 11.46425 NA Intergenic Intergenic -52813 NM_001243597 50937 Hs.38034 NM_016952 HPRD:16372 CDON CDO|CDON1|HPE11|ORCAM cell adhesion associated, oncogene regulated protein-coding 13-PTNLD9-TUMOR_peak_41581 chr5 96378759 96379081 + 11.46425 NA Intergenic Intergenic 84764 NM_175920 4012 Hs.527199 NM_005575 HPRD:01041 LNPEP CAP|IRAP|P-LAP|PLAP leucyl/cystinyl aminopeptidase protein-coding 13-PTNLD9-TUMOR_peak_31650 chr20 55450191 55450368 + 11.46425 NA Intergenic Intergenic 245921 NM_003222 7022 Hs.473152 NM_003222 HPRD:03361 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma) protein-coding 13-PTNLD9-TUMOR_peak_48270 chr7 90396180 90396385 + 11.46425 NA intron (NM_001287135, intron 4 of 14) LTR18B|LTR|ERVL 57152 NM_001287136 5218 Hs.258576 NM_012395 HPRD:15121 CDK14 PFTAIRE1|PFTK1 cyclin-dependent kinase 14 protein-coding 13-PTNLD9-TUMOR_peak_29449 chr2 197264933 197265114 + 11.46425 NA intron (NM_020760, intron 2 of 28) intron (NM_020760, intron 2 of 28) 140275 NR_110226 101927482 Hs.191841 NR_110225 ENSG00000229056 LOC101927482 - uncharacterized LOC101927482 ncRNA 13-PTNLD9-TUMOR_peak_18395 chr16 4932628 4933077 + 11.46425 NA TTS (NM_001288656) TTS (NM_001288656) 34471 NM_001288656 29855 Hs.440219 NM_016936 HPRD:11660 UBN1 VT|VT4 ubinuclein 1 protein-coding 13-PTNLD9-TUMOR_peak_46729 chr7 2860932 2861246 + 11.44404 NA intron (NM_001293092, intron 1 of 2) intron (NM_001293092, intron 1 of 2) -6196 NM_001282441 2768 Hs.487341 NM_007353 HPRD:05093 GNA12 NNX3|RMP|gep guanine nucleotide binding protein (G protein) alpha 12 protein-coding 13-PTNLD9-TUMOR_peak_28127 chr2 113882153 113882336 + 11.44404 NA intron (NM_173843, intron 2 of 5) MIR|SINE|MIR -2894 NM_173842 3557 Hs.81134 NM_000577 HPRD:00978 IL1RN DIRA|ICIL-1RA|IL-1RN|IL-1ra|IL-1ra3|IL1F3|IL1RA|IRAP|MVCD4 interleukin 1 receptor antagonist protein-coding 13-PTNLD9-TUMOR_peak_9377 chr11 27883738 27883878 + 11.44404 NA Intergenic MIR3|SINE|MIR -140203 NM_170731 627 Hs.502182 NM_001709 HPRD:00214 BDNF ANON2|BULN2 brain-derived neurotrophic factor protein-coding 13-PTNLD9-TUMOR_peak_51500 chr8 103922137 103922305 + 11.44404 NA Intergenic Intergenic -45824 NM_015878 51582 Hs.459106 NM_015878 HPRD:07443 AZIN1 OAZI|OAZIN|ODC1L antizyme inhibitor 1 protein-coding 13-PTNLD9-TUMOR_peak_40868 chr5 54038283 54038688 + 11.44404 NA intron (NR_104658, intron 1 of 2) LTR16A2|LTR|ERVL 1601 NR_104658 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 13-PTNLD9-TUMOR_peak_48053 chr7 76067354 76067536 + 11.44158 NA intron (NM_007155, intron 6 of 8) intron (NM_007155, intron 6 of 8) 13173 NM_001110354 7784 Hs.656137 NM_007155 HPRD:01690 ZP3 ZP3A|ZP3B|ZPC|Zp-3 zona pellucida glycoprotein 3 (sperm receptor) protein-coding 13-PTNLD9-TUMOR_peak_31269 chr20 45946062 45946344 + 11.43647 NA intron (NM_001281772, intron 4 of 23) intron (NM_001281772, intron 4 of 23) -1043 NR_024594 100131496 Hs.662547 NR_024594 ENSG00000267882 LOC100131496 - uncharacterized LOC100131496 ncRNA 13-PTNLD9-TUMOR_peak_31687 chr20 56292994 56293125 + 11.43647 NA Intergenic L2a|LINE|L2 -6467 NM_199171 56937 Hs.517155 NM_020182 HPRD:09415 PMEPA1 STAG1|TMEPAI prostate transmembrane protein, androgen induced 1 protein-coding 13-PTNLD9-TUMOR_peak_5143 chr1 204386333 204386486 + 11.43647 NA Intergenic Intergenic -5464 NM_032833 84919 Hs.304376 NM_032833 HPRD:17892 PPP1R15B CREP protein phosphatase 1, regulatory subunit 15B protein-coding 13-PTNLD9-TUMOR_peak_51551 chr8 107099460 107099596 + 11.43451 NA Intergenic LTR2B|LTR|ERV1 -26797 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 - ZFPM2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_4468 chr1 174998936 174999096 + 11.43451 NA Intergenic Intergenic -6425 NR_037606 63931 Hs.654858 NM_022100 HPRD:14777 MRPS14 DJ262D12.2|HSMRPS14|MRP-S14|S14mt mitochondrial ribosomal protein S14 protein-coding 13-PTNLD9-TUMOR_peak_18539 chr16 12130977 12131177 + 11.43451 NA intron (NM_032167, intron 4 of 20) MER58A|DNA|hAT-Charlie 60475 NM_032167 92017 Hs.458401 NM_032167 HPRD:17437 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 13-PTNLD9-TUMOR_peak_29015 chr2 169453854 169454048 + 11.43451 NA intron (NM_203463, intron 3 of 9) LTR32|LTR|ERVL 14498 NR_039933 100616356 NR_039933 MIR4774 - microRNA 4774 ncRNA 13-PTNLD9-TUMOR_peak_13398 chr12 79817915 79818086 + 11.43451 NA intron (NM_005639, intron 9 of 10) intron (NM_005639, intron 9 of 10) 4963 NR_031700 100302136 NR_031700 MIR1252 MIRN1252|hsa-mir-1252 microRNA 1252 ncRNA 13-PTNLD9-TUMOR_peak_1839 chr1 54587121 54587487 + 11.43451 NA Intergenic Intergenic 31375 NM_201546 200008 Hs.568555 NM_201546 CDCP2 - CUB domain containing protein 2 protein-coding 13-PTNLD9-TUMOR_peak_32325 chr21 40170540 40170663 + 11.43451 NA Intergenic L2a|LINE|L2 -6630 NM_001256295 2114 Hs.644231 NM_005239 HPRD:01263 ETS2 ETS2IT1 v-ets avian erythroblastosis virus E26 oncogene homolog 2 protein-coding 13-PTNLD9-TUMOR_peak_45269 chr6 51378727 51378951 + 11.43451 NA Intergenic Intergenic 573584 NM_170724 5314 Hs.662050 NM_138694 HPRD:05987 PKHD1 ARPKD|FCYT|TIGM1 polycystic kidney and hepatic disease 1 (autosomal recessive) protein-coding 13-PTNLD9-TUMOR_peak_7320 chr10 49879621 49879914 + 11.43451 NA Intergenic Intergenic -13751 NM_020945 57705 Hs.287379 NM_020945 ENSG00000128815 WDFY4 C10orf64 WDFY family member 4 protein-coding 13-PTNLD9-TUMOR_peak_7455 chr10 61387169 61387445 + 11.43451 NA Intergenic AluJb|SINE|Alu 82342 NM_194298 220963 Hs.499709 NM_194298 HPRD:15348 SLC16A9 C10orf36|MCT9 solute carrier family 16, member 9 protein-coding 13-PTNLD9-TUMOR_peak_52292 chr8 140892015 140892160 + 11.43451 NA intron (NM_031466, intron 21 of 22) MIRb|SINE|MIR -176788 NM_001282534 51305 Hs.493037 NM_001282534 HPRD:16167 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium channel, subfamily K, member 9 protein-coding 13-PTNLD9-TUMOR_peak_39102 chr4 113445013 113445188 + 11.43451 NA Intergenic CpG -7772 NM_024019 63973 Hs.744415 NM_024019 HPRD:06976 NEUROG2 Atoh4|Math4A|NGN2|bHLHa8|ngn-2 neurogenin 2 protein-coding 13-PTNLD9-TUMOR_peak_54291 chr9 107631337 107631512 + 11.43451 NA intron (NM_005502, intron 5 of 49) intron (NM_005502, intron 5 of 49) 59103 NM_005502 19 Hs.659274 NM_005502 HPRD:02501 ABCA1 ABC-1|ABC1|CERP|HDLDT1|TGD ATP-binding cassette, sub-family A (ABC1), member 1 protein-coding 13-PTNLD9-TUMOR_peak_23629 chr19 1507858 1508114 + 11.43451 NA intron (NM_213604, intron 7 of 11) CpG 5202 NM_213604 339366 Hs.371674 NM_213604 HPRD:15504 ADAMTSL5 THSD6 ADAMTS-like 5 protein-coding 13-PTNLD9-TUMOR_peak_46649 chr7 899115 899244 + 11.43451 NA intron (NM_025154, intron 12 of 17) intron (NM_025154, intron 12 of 17) -17012 NM_015949 51608 Hs.107387 NM_015949 HPRD:12909 GET4 C7orf20|CEE|TRC35 golgi to ER traffic protein 4 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_41345 chr5 76163681 76163945 + 11.43451 NA intron (NM_130772, intron 1 of 4) intron (NM_130772, intron 1 of 4) 17987 NM_130772 170591 Hs.482563 NM_130772 S100Z Gm625|S100-zeta S100 calcium binding protein Z protein-coding 13-PTNLD9-TUMOR_peak_48950 chr7 127645286 127645484 + 11.43451 NA intron (NM_014390, intron 16 of 23) intron (NM_014390, intron 16 of 23) 7823 NR_027330 27099 Hs.657377 NM_014411 SND1-IT1 C7orf54|NAG8|NSG-X SND1 intronic transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_11469 chr11 122674241 122674384 + 11.43451 NA intron (NM_032873, intron 11 of 13) intron (NM_032873, intron 11 of 13) -34943 NM_019604 56253 Hs.159523 NM_019604 HPRD:16760 CRTAM CD355 cytotoxic and regulatory T cell molecule protein-coding 13-PTNLD9-TUMOR_peak_54628 chr9 123128927 123129222 + 11.43451 NA Intergenic MLT1D|LTR|ERVL-MaLR -121746 NR_029604 406939 NR_029604 miRBase:MI0000262 MIR147A MIR147|MIRN147|hsa-mir-147a microRNA 147a ncRNA 13-PTNLD9-TUMOR_peak_16492 chr14 94812631 94813018 + 11.43133 NA Intergenic Intergenic 20215 NM_006220 390502 Hs.525557 NM_006220 SERPINA2 ARGS|ATR|PIL|SERPINA2P|psiATR serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 2 (gene/pseudogene) protein-coding 13-PTNLD9-TUMOR_peak_24863 chr19 38328269 38328447 + 11.43133 NA intron (NR_040015, intron 2 of 5) L1PA2|LINE|L1 17478 NR_040015 100631378 Hs.726940 NR_040015 ENSG00000225868 LOC100631378 - uncharacterized 100631378 ncRNA 13-PTNLD9-TUMOR_peak_34668 chr3 52804928 52805273 + 11.43133 NA promoter-TSS (NM_001193533) promoter-TSS (NM_001193533) -135 NM_001193533 6787 Hs.631921 NM_003157 HPRD:11880 NEK4 NRK2|STK2|pp12301 NIMA-related kinase 4 protein-coding 13-PTNLD9-TUMOR_peak_49543 chr7 148198871 148199100 + 11.43133 NA Intergenic LTR9B|LTR|ERV1 -88672 NM_145304 202865 Hs.352212 NM_145304 HPRD:12921 C7orf33 - chromosome 7 open reading frame 33 protein-coding 13-PTNLD9-TUMOR_peak_55794 chrX 47221542 47221750 + 11.43133 NA Intergenic Intergenic -8353 NM_003446 7712 Hs.89897 NM_003446 ZNF157 HZF22 zinc finger protein 157 protein-coding 13-PTNLD9-TUMOR_peak_5756 chr1 229297622 229297876 + 11.43133 NA Intergenic AluJo|SINE|Alu -109060 NM_001271998 5867 Hs.296169 NM_004578 HPRD:01541 RAB4A HRES-1|HRES-1/RAB4|HRES1|RAB4 RAB4A, member RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_321 chr1 9302658 9302897 + 11.43133 NA intron (NM_001282587, intron 1 of 4) intron (NM_001282587, intron 1 of 4) 2874 NM_001282587 9563 Hs.463511 NM_004285 HPRD:00681 H6PD CORTRD1|G6PDH|GDH hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase) protein-coding 13-PTNLD9-TUMOR_peak_13802 chr12 110283201 110283336 + 11.43133 NA Intergenic CpG -12056 NM_021625 59341 Hs.506713 NM_021625 HPRD:05667 TRPV4 CMT2C|HMSN2C|OTRPC4|SMAL|SPSMA|SSQTL1|TRP12|VRL2|VROAC transient receptor potential cation channel, subfamily V, member 4 protein-coding 13-PTNLD9-TUMOR_peak_37921 chr4 8978303 8978623 + 11.43133 NA Intergenic HERVE-int|LTR|ERV1 26986 NM_001040071 650293 Hs.535167 NM_001040071 LOC650293 - seven transmembrane helix receptor protein-coding 13-PTNLD9-TUMOR_peak_4060 chr1 159869886 159870131 + 11.43079 NA promoter-TSS (NM_012337) promoter-TSS (NM_012337) -102 NM_012337 25790 Hs.647705 NM_012337 HPRD:05514 CFAP45 CCDC19|NESG1 cilia and flagella associated protein 45 protein-coding 13-PTNLD9-TUMOR_peak_3845 chr1 155140102 155140577 + 11.43079 NA Intergenic Intergenic 5465 NM_173852 200185 Hs.516671 NM_173852 HPRD:17253 KRTCAP2 KCP2 keratinocyte associated protein 2 protein-coding 13-PTNLD9-TUMOR_peak_34635 chr3 51976910 51977084 + 11.43079 NA intron (NM_001003931, intron 1 of 10) intron (NM_001003931, intron 1 of 10) 636 NM_001003931 10039 Hs.271742 NM_005485 HPRD:06370 PARP3 ADPRT3|ADPRTL2|ADPRTL3|ARTD3|IRT1|PADPRT-3 poly (ADP-ribose) polymerase family, member 3 protein-coding 13-PTNLD9-TUMOR_peak_44727 chr6 34203876 34204141 + 11.41719 NA promoter-TSS (NM_002131) promoter-TSS (NM_002131) -569 NM_145903 3159 Hs.518805 NM_002131 HPRD:02829 HMGA1 HMG-R|HMGA1A|HMGIY high mobility group AT-hook 1 protein-coding 13-PTNLD9-TUMOR_peak_3277 chr1 145128059 145128214 + 11.41719 NA intron (NM_001277444, intron 20 of 24) intron (NM_001277444, intron 20 of 24) 31729 NM_004892 9554 Hs.632438 NM_004892 SEC22B ERS-24|SEC22L1 SEC22 vesicle trafficking protein homolog B (S. cerevisiae) (gene/pseudogene) protein-coding 13-PTNLD9-TUMOR_peak_40944 chr5 56623833 56624177 + 11.41043 NA Intergenic LTR8A|LTR|ERV1 114104 NM_001127236 65056 Hs.444279 NM_022913 HPRD:16333 GPBP1 GPBP|SSH6|VASCULIN GC-rich promoter binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_38769 chr4 84482590 84482798 + 11.41043 NA intron (NM_001256421, intron 3 of 12) intron (NM_001256421, intron 3 of 12) 25224 NM_032717 84803 Hs.99196 NM_032717 HPRD:14417 AGPAT9 AGPAT 10|AGPAT8|GPAT3|LPAAT-theta|MAG1 1-acylglycerol-3-phosphate O-acyltransferase 9 protein-coding 13-PTNLD9-TUMOR_peak_31613 chr20 53870416 53870629 + 11.41043 NA Intergenic Intergenic -169059 NR_110629 102723578 Hs.446269 NR_110629 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 13-PTNLD9-TUMOR_peak_17534 chr15 69683005 69683162 + 11.41043 NA intron (NM_001104554, intron 6 of 8) intron (NM_001104554, intron 6 of 8) -23502 NM_138555 9493 Hs.270845 NM_004856 HPRD:05455 KIF23 CHO1|KNSL5|MKLP-1|MKLP1 kinesin family member 23 protein-coding 13-PTNLD9-TUMOR_peak_16077 chr14 68117529 68117718 + 11.41043 NA TTS (NM_006370) TTS (NM_006370) 23979 NM_006370 10490 Hs.741177 NM_006370 HPRD:04440 VTI1B VTI1|VTI1-LIKE|VTI1L|VTI2|v-SNARE|vti1-rp1 vesicle transport through interaction with t-SNAREs 1B protein-coding 13-PTNLD9-TUMOR_peak_5166 chr1 204667465 204667576 + 11.41043 NA Intergenic AluY|SINE|Alu -12923 NM_201630 10446 Hs.26312 NM_006338 HPRD:16109 LRRN2 FIGLER7|GAC1|LRANK1|LRRN5 leucine rich repeat neuronal 2 protein-coding 13-PTNLD9-TUMOR_peak_7949 chr10 88894282 88894430 + 11.41043 NA intron (NM_019054, intron 2 of 8) intron (NM_019054, intron 2 of 8) 39403 NM_019054 54537 Hs.500419 NM_019054 HPRD:09944 FAM35A FAM35A1|bA163M19.1 family with sequence similarity 35, member A protein-coding 13-PTNLD9-TUMOR_peak_56522 chrX 134070682 134070850 + 11.41043 NA Intergenic L2a|LINE|L2 -21469 NM_019556 56180 Hs.590789 NM_019556 HPRD:06483 MOSPD1 DJ473B4 motile sperm domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_52802 chr9 16247313 16247435 + 11.41043 NA intron (NR_073471, intron 1 of 3) intron (NR_073471, intron 1 of 3) 5731 NM_001271829 100129385 Hs.586441 NM_001271829 ENSG00000205549 C9orf92 Em:AL513424.1 chromosome 9 open reading frame 92 protein-coding 13-PTNLD9-TUMOR_peak_37299 chr3 193859122 193859293 + 11.40651 NA Intergenic CpG 5276 NM_005524 3280 Hs.250666 NM_005524 HPRD:00770 HES1 HES-1|HHL|HRY|bHLHb39 hes family bHLH transcription factor 1 protein-coding 13-PTNLD9-TUMOR_peak_49906 chr7_gl000195_random 103359 103496 + 11.40529 NA Intergenic Intergenic -16708 NM_001242480 389831 Hs.743984 NM_001242480 LOC389831 - uncharacterized LOC389831 protein-coding 13-PTNLD9-TUMOR_peak_21933 chr17 72439003 72439453 + 11.40529 NA intron (NM_022036, intron 2 of 3) intron (NM_022036, intron 2 of 3) 9392 NM_018653 55890 Hs.446438 NM_018653 GPRC5C RAIG-3|RAIG3 G protein-coupled receptor, class C, group 5, member C protein-coding 13-PTNLD9-TUMOR_peak_49212 chr7 134856489 134856648 + 11.40462 NA promoter-TSS (NM_001243754) promoter-TSS (NM_001243754) -990 NM_001243751 78996 Hs.732134 NM_024033 HPRD:08333 C7orf49 MRI chromosome 7 open reading frame 49 protein-coding 13-PTNLD9-TUMOR_peak_10649 chr11 75177106 75177245 + 11.40462 NA intron (NM_030792, intron 3 of 16) intron (NM_030792, intron 3 of 16) -35501 NM_001039548 283212 Hs.292451 NM_173583 HPRD:08747 KLHL35 - kelch-like family member 35 protein-coding 13-PTNLD9-TUMOR_peak_33708 chr3 9944456 9944705 + 11.40462 NA promoter-TSS (NM_153480) promoter-TSS (NM_153480) 68 NM_001193380 132014 Hs.390823 NM_144640 HPRD:17143 IL17RE - interleukin 17 receptor E protein-coding 13-PTNLD9-TUMOR_peak_14108 chr12 122222444 122222673 + 11.39645 NA intron (NM_019034, intron 2 of 4) MIRc|SINE|MIR 9036 NM_019034 54509 Hs.644504 NM_019034 HPRD:15246 RHOF ARHF|RIF ras homolog family member F (in filopodia) protein-coding 13-PTNLD9-TUMOR_peak_41427 chr5 81051318 81051480 + 11.39645 NA Intergenic Intergenic -4327 NM_001256736 23635 Hs.102735 NM_012446 SSBP2 HSPC116|SOSS-B2 single-stranded DNA binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_49598 chr7 149659904 149660295 + 11.39645 NA Intergenic Intergenic -89148 NR_027040 401431 Hs.556998 NM_001008745 HPRD:17391 ATP6V0E2-AS1 - ATP6V0E2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_10477 chr11 70093638 70094114 + 11.39498 NA Intergenic Intergenic -22930 NR_045286 8500 Hs.530749 NM_003626 HPRD:11451 PPFIA1 LIP.1|LIP1|LIPRIN protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_40629 chr5 36876724 36876906 + 11.39498 NA promoter-TSS (NM_133433) promoter-TSS (NM_133433) -19 NR_046262 646719 Hs.355684 NR_046262 LOC646719 - uncharacterized LOC646719 ncRNA 13-PTNLD9-TUMOR_peak_883 chr1 29208657 29208800 + 11.39498 NA Intergenic Intergenic -4875 NM_001166005 2035 Hs.175437 NM_004437 HPRD:00558 EPB41 4.1R|EL1|HE erythrocyte membrane protein band 4.1 protein-coding 13-PTNLD9-TUMOR_peak_36329 chr3 149080979 149081111 + 11.39264 NA Intergenic L2a|LINE|L2 -14520 NR_109810 100874091 Hs.549633 NR_046650 TM4SF1-AS1 - TM4SF1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_36929 chr3 183088688 183088832 + 11.38786 NA intron (NM_015078, intron 3 of 29) intron (NM_015078, intron 3 of 29) 57297 NM_015078 23101 Hs.208267 NM_015078 HPRD:08308 MCF2L2 ARHGEF22 MCF.2 cell line derived transforming sequence-like 2 protein-coding 13-PTNLD9-TUMOR_peak_46305 chr6 151077415 151077635 + 11.38786 NA intron (NM_001029884, intron 3 of 16) intron (NM_001029884, intron 3 of 16) -109290 NM_001242769 25902 Hs.591343 NM_015440 HPRD:09967 MTHFD1L FTHFSDC1|MTC1THFS|dJ292B18.2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like protein-coding 13-PTNLD9-TUMOR_peak_1972 chr1 60139630 60139831 + 11.38786 NA exon (NM_018291, exon 14 of 16) exon (NM_018291, exon 14 of 16) 59238 NR_039861 100616409 NR_039861 miRBase:MI0017345 MIR4711 - microRNA 4711 ncRNA 13-PTNLD9-TUMOR_peak_43222 chr5 177318907 177319122 + 11.38786 NA Intergenic Intergenic 16752 NR_003615 728554 Hs.535769 NR_003615 ENSG00000170089 LOC728554 - THO complex 3 pseudogene pseudo 13-PTNLD9-TUMOR_peak_49077 chr7 130538442 130538603 + 11.38786 NA Intergenic Intergenic 23047 NR_029503 407021 NR_029503 MIR29A MIRN29|MIRN29A|hsa-mir-29|hsa-mir-29a|miRNA29A microRNA 29a ncRNA 13-PTNLD9-TUMOR_peak_25871 chr1_gl000191_random 92433 92666 + 11.38786 NA Intergenic Intergenic -42268 NM_054016 10772 Hs.3530 NM_006625 HPRD:05562 SRSF10 FUSIP1|FUSIP2|NSSR|PPP1R149|SFRS13|SFRS13A|SRp38|SRrp40|TASR|TASR1|TASR2 serine/arginine-rich splicing factor 10 protein-coding 13-PTNLD9-TUMOR_peak_5993 chr1 236083529 236083666 + 11.38786 NA Intergenic Intergenic -36589 NM_001301365 1130 Hs.532411 NM_000081 HPRD:06060 LYST CHS|CHS1 lysosomal trafficking regulator protein-coding 13-PTNLD9-TUMOR_peak_42526 chr5 147100855 147101021 + 11.38786 NA intron (NM_001270941, intron 1 of 21) L1PA2|LINE|L1 61473 NM_014790 9832 Hs.740461 NM_014790 HPRD:11090 JAKMIP2 JAMIP2|NECC1 janus kinase and microtubule interacting protein 2 protein-coding 13-PTNLD9-TUMOR_peak_21837 chr17 65301970 65302313 + 11.38736 NA Intergenic AluJb|SINE|Alu 60580 NM_174871 5718 Hs.592689 NM_002816 PSMD12 Rpn5|p55 proteasome (prosome, macropain) 26S subunit, non-ATPase, 12 protein-coding 13-PTNLD9-TUMOR_peak_48947 chr7 127578753 127578972 + 11.38736 NA intron (NM_014390, intron 15 of 23) intron (NM_014390, intron 15 of 23) -58700 NR_027330 27099 Hs.657377 NM_014411 SND1-IT1 C7orf54|NAG8|NSG-X SND1 intronic transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_42191 chr5 136118879 136118979 + 11.38736 NA Intergenic L1PA2|LINE|L1 -417765 NM_001167576 57113 Hs.591263 NM_020389 HPRD:18228 TRPC7 TRP7 transient receptor potential cation channel, subfamily C, member 7 protein-coding 13-PTNLD9-TUMOR_peak_43866 chr6 13724562 13724775 + 11.38736 NA Intergenic LTR16A1|LTR|ERVL -12872 NM_005493 10048 Hs.708182 NM_005493 HPRD:04835 RANBP9 BPM-L|BPM90|RANBPM|RanBP7 RAN binding protein 9 protein-coding 13-PTNLD9-TUMOR_peak_4974 chr1 201673447 201673566 + 11.38736 NA intron (NR_046696, intron 2 of 2) intron (NR_046696, intron 2 of 2) -15130 NR_049823 100847050 NR_049823 MIR5191 - microRNA 5191 ncRNA 13-PTNLD9-TUMOR_peak_45726 chr6 90712860 90713076 + 11.38736 NA intron (NM_021813, intron 6 of 8) L2a|LINE|L2 108780 NM_032602 84694 Hs.334499 NM_032602 HPRD:13104 GJA10 CX62 gap junction protein, alpha 10, 62kDa protein-coding 13-PTNLD9-TUMOR_peak_4896 chr1 200145433 200145614 + 11.38736 NA 3' UTR (NM_003822, exon 7 of 7) 3' UTR (NM_003822, exon 7 of 7) 133570 NM_001276464 2494 Hs.33446 NM_003822 HPRD:06830 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5, group A, member 2 protein-coding 13-PTNLD9-TUMOR_peak_41122 chr5 67729951 67730428 + 11.38736 NA Intergenic Intergenic 141793 NM_001242466 5295 Hs.132225 NM_181504 HPRD:01381 PIK3R1 AGM7|GRB1|p85|p85-ALPHA phosphoinositide-3-kinase, regulatory subunit 1 (alpha) protein-coding 13-PTNLD9-TUMOR_peak_25888 chr1_gl000192_random 376065 376243 + 11.38736 NA intron (NR_103556, intron 3 of 45) L1ME5|LINE|L1 31356 NR_103556 100288805 Hs.648712 NR_049745 HYDIN2 HYDINP1 HYDIN2, axonemal central pair apparatus protein (pseudogene) pseudo 13-PTNLD9-TUMOR_peak_48410 chr7 97748670 97748821 + 11.38736 NA intron (NM_014916, intron 1 of 13) intron (NM_014916, intron 1 of 13) 12548 NM_014916 22853 Hs.444179 NM_014916 HPRD:13994 LMTK2 AATYK2|BREK|KPI-2|KPI2|LMR2|PPP1R100|cprk lemur tyrosine kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_47944 chr7 73895313 73895471 + 11.38653 NA intron (NM_005685, intron 1 of 26) intron (NM_005685, intron 1 of 26) 27272 NM_001199207 9569 Hs.647056 NM_005685 HPRD:08379 GTF2IRD1 BEN|CREAM1|GTF3|MUSTRD1|RBAP2|WBS|WBSCR11|WBSCR12|hMusTRD1alpha1 GTF2I repeat domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_16125 chr14 69251740 69251882 + 11.37934 NA Intergenic MIRc|SINE|MIR 8820 NM_004926 677 Hs.85155 NM_004926 HPRD:03041 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein-like 1 protein-coding 13-PTNLD9-TUMOR_peak_11758 chr12 322324 322587 + 11.37406 NA intron (NM_001122848, intron 1 of 15) intron (NM_001122848, intron 1 of 15) 158 NM_003044 6539 Hs.437174 NM_003044 HPRD:04358 SLC6A12 BGT-1|BGT1|GAT2 solute carrier family 6 (neurotransmitter transporter), member 12 protein-coding 13-PTNLD9-TUMOR_peak_10542 chr11 71847387 71847647 + 11.37406 NA intron (NM_000804, intron 2 of 4) intron (NM_000804, intron 2 of 4) 746 NM_000804 2352 Hs.352 NM_000804 HPRD:03918 FOLR3 FR-G|FR-gamma|gamma-hFR folate receptor 3 (gamma) protein-coding 13-PTNLD9-TUMOR_peak_41910 chr5 124744457 124744950 + 11.37406 NA Intergenic Intergenic -84251 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LOC101927460 - uncharacterized LOC101927460 ncRNA 13-PTNLD9-TUMOR_peak_45141 chr6 44202547 44202698 + 11.37406 NA TTS (NM_004955) TTS (NM_004955) 11259 NM_001078177 2030 Hs.25450 NM_004955 HPRD:03724 SLC29A1 ENT1 solute carrier family 29 (equilibrative nucleoside transporter), member 1 protein-coding 13-PTNLD9-TUMOR_peak_3290 chr1 145209976 145210288 + 11.37331 NA intron (NM_203458, intron 1 of 4) intron (NM_203458, intron 1 of 4) 1019 NM_203458 388677 Hs.655156 NM_203458 HPRD:14833 NOTCH2NL N2N notch 2 N-terminal like protein-coding 13-PTNLD9-TUMOR_peak_53457 chr9 67297816 67297986 + 11.36954 NA Intergenic Intergenic -8409 NR_002817 375719 Hs.658215 NR_002817 AQP7P1 bA251O17.3 aquaporin 7 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_21617 chr17 56415421 56415599 + 11.36487 NA intron (NR_038416, intron 1 of 2) intron (NR_038416, intron 1 of 2) 947 NR_038417 100506779 Hs.718477 NR_038410 ENSG00000265148 BZRAP1-AS1 - BZRAP1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_9652 chr11 45202503 45202641 + 11.36487 NA intron (NM_001256695, intron 1 of 7) CpG 33678 NM_001256695 56981 Hs.178715 NM_020229 HPRD:11456 PRDM11 PFM8 PR domain containing 11 protein-coding 13-PTNLD9-TUMOR_peak_36396 chr3 150588300 150588486 + 11.36487 NA Intergenic Intergenic 73630 NM_052995 7401 Hs.745448 NM_052995 HPRD:05905 CLRN1 RP61|USH3|USH3A clarin 1 protein-coding 13-PTNLD9-TUMOR_peak_11779 chr12 741301 741829 + 11.36487 NA intron (NR_122124, intron 2 of 4) intron (NR_122124, intron 2 of 4) 1508 NR_122124 100049716 Hs.655804 NR_122124 ENSG00000177406 LOC100049716 - uncharacterized LOC100049716 ncRNA 13-PTNLD9-TUMOR_peak_31818 chr20 62330550 62330755 + 11.36289 NA TTS (NR_037882) TTS (NR_037882) 2648 NM_003823 8771 Hs.434878 NM_003823 HPRD:04527 TNFRSF6B DCR3|DJ583P15.1.1|M68|M68E|TR6 tumor necrosis factor receptor superfamily, member 6b, decoy protein-coding 13-PTNLD9-TUMOR_peak_12819 chr12 52625767 52625949 + 11.36289 NA Intergenic Intergenic -1096 NM_005556 3855 Hs.411501 NM_005556 HPRD:01014 KRT7 CK7|K2C7|K7|SCL keratin 7 protein-coding 13-PTNLD9-TUMOR_peak_3102 chr1 120663240 120663385 + 11.35867 NA Intergenic Intergenic -50995 NM_024408 4853 Hs.487360 NM_024408 HPRD:02606 NOTCH2 AGS2|HJCYS|hN2 notch 2 protein-coding 13-PTNLD9-TUMOR_peak_35690 chr3 125450928 125451290 + 11.35867 NA Intergenic Intergenic 58286 NR_031687 100302204 NR_031687 miRBase:MI0006421 MIR548I1 MIR548I-1|MIRN548I1|hsa-mir-548i-1 microRNA 548i-1 ncRNA 13-PTNLD9-TUMOR_peak_44954 chr6 40926006 40926171 + 11.35867 NA intron (NR_110873, intron 1 of 5) intron (NR_110873, intron 1 of 5) 64931 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 13-PTNLD9-TUMOR_peak_47997 chr7 75115478 75115677 + 11.35867 NA promoter-TSS (NM_001099415) promoter-TSS (NM_001099415) -12 NM_001099415 100101267 Hs.712563 NM_001099415 ENSG00000135213 POM121C POM121-2 POM121 transmembrane nucleoporin C protein-coding 13-PTNLD9-TUMOR_peak_50604 chr8 37378960 37379211 + 11.35775 NA promoter-TSS (NR_121621) promoter-TSS (NR_121621) -181 NR_121621 100507420 Hs.105962 NR_121620 LOC100507420 - uncharacterized LOC100507420 ncRNA 13-PTNLD9-TUMOR_peak_6946 chr10 35835926 35836124 + 11.35775 NA intron (NM_181698, intron 9 of 11) intron (NM_181698, intron 9 of 11) -58313 NM_153368 219770 Hs.638922 NM_153368 HPRD:13103 GJD4 CX40.1 gap junction protein, delta 4, 40.1kDa protein-coding 13-PTNLD9-TUMOR_peak_23849 chr19 8488845 8489031 + 11.35775 NA intron (NM_001005416, intron 2 of 3) intron (NM_001005416, intron 2 of 3) 10751 NM_016496 51257 Hs.631861 NM_016496 HPRD:14361 MARCH2 MARCH-II|RNF172 membrane-associated ring finger (C3HC4) 2, E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_35850 chr3 129102256 129102366 + 11.35775 NA non-coding (NR_003111, exon 4 of 4) non-coding (NR_003111, exon 4 of 4) 13880 NR_002992 677797 Hs.711399 NR_002992 ENSG00000207088 SNORA7B ACA7B small nucleolar RNA, H/ACA box 7B snoRNA 13-PTNLD9-TUMOR_peak_11098 chr11 105590282 105590456 + 11.35775 NA intron (NM_001077243, intron 3 of 16) intron (NM_001077243, intron 3 of 16) 108958 NR_046356 2893 Hs.503743 NM_000829 HPRD:00694 GRIA4 GLUR4|GLUR4C|GLURD|GluA4 glutamate receptor, ionotropic, AMPA 4 protein-coding 13-PTNLD9-TUMOR_peak_52056 chr8 130719936 130720477 + 11.35775 NA Intergenic MER45B|DNA|hAT-Tip100 78928 NM_031415 56169 Hs.133244 NM_031415 HPRD:12222 GSDMC MLZE gasdermin C protein-coding 13-PTNLD9-TUMOR_peak_12958 chr12 55743564 55743692 + 11.35775 NA Intergenic L1PA2|LINE|L1 -15267 NM_001005497 390323 Hs.554554 NM_001005497 HPRD:15061 OR6C75 - olfactory receptor, family 6, subfamily C, member 75 protein-coding 13-PTNLD9-TUMOR_peak_33407 chr22 44485103 44485330 + 11.35775 NA intron (NM_001243385, intron 1 of 12) intron (NM_001243385, intron 1 of 12) 20219 NM_001243385 29780 Hs.475074 NM_013327 HPRD:16284 PARVB CGI-56 parvin, beta protein-coding 13-PTNLD9-TUMOR_peak_29431 chr2 196425954 196426114 + 11.35775 NA Intergenic L2c|LINE|L2 -95498 NM_001127257 57181 Hs.650158 NM_020342 HPRD:10572 SLC39A10 LZT-Hs2 solute carrier family 39 (zinc transporter), member 10 protein-coding 13-PTNLD9-TUMOR_peak_45680 chr6 88506427 88506580 + 11.35775 NA intron (NR_110869, intron 2 of 4) intron (NR_110869, intron 2 of 4) 11925 NR_110869 101928911 Hs.571178 NR_110869 LOC101928911 - uncharacterized LOC101928911 ncRNA 13-PTNLD9-TUMOR_peak_13570 chr12 99594619 99594754 + 11.35775 NA intron (NM_152788, intron 14 of 25) intron (NM_152788, intron 14 of 25) -45818 NM_001204067 56899 Hs.506458 NM_020140 HPRD:07426 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 13-PTNLD9-TUMOR_peak_54972 chr9 136085544 136085763 + 11.35775 NA Intergenic Intergenic -1016 NR_110243 29989 Hs.449629 NM_014581 HPRD:05209 OBP2B LCN14|OBPIIb odorant binding protein 2B protein-coding 13-PTNLD9-TUMOR_peak_32905 chr22 23271006 23271164 + 11.35775 NA Intergenic Intergenic 41125 NM_001178126 100423062 Hs.449585 NM_001178126 ENSG00000254709 IGLL5 - immunoglobulin lambda-like polypeptide 5 protein-coding 13-PTNLD9-TUMOR_peak_45803 chr6 102114193 102114445 + 11.35775 NA intron (NM_021956, intron 3 of 15) MER77B|LTR|ERVL 267458 NM_021956 2898 Hs.98262 NM_021956 HPRD:00692 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate receptor, ionotropic, kainate 2 protein-coding 13-PTNLD9-TUMOR_peak_6635 chr10 21581712 21581995 + 11.35775 NA Intergenic Intergenic 118622 NR_046284 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_20603 chr17 18965630 18966135 + 11.34560 NA Intergenic AluSx|SINE|Alu -15546 NM_006613 10750 Hs.567416 NM_006613 GRAP - GRB2-related adaptor protein protein-coding 13-PTNLD9-TUMOR_peak_32805 chr22 20885679 20885815 + 11.34467 NA intron (NM_001293237, intron 1 of 16) MIR3|SINE|MIR 23412 NM_001293237 51586 Hs.517421 NM_015889 HPRD:12117 MED15 ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7 mediator complex subunit 15 protein-coding 13-PTNLD9-TUMOR_peak_2060 chr1 64358736 64359052 + 11.34467 NA intron (NM_001083592, intron 1 of 6) intron (NM_001083592, intron 1 of 6) 119204 NM_001083592 4919 Hs.128753 NM_005012 HPRD:03821 ROR1 NTRKR1|dJ537F10.1 receptor tyrosine kinase-like orphan receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_9285 chr11 19799229 19799362 + 11.34467 NA intron (NM_182964, intron 1 of 37) intron (NM_182964, intron 1 of 37) -17666 NR_039843 100616426 NR_039843 miRBase:MI0017327 MIR4694 - microRNA 4694 ncRNA 13-PTNLD9-TUMOR_peak_22001 chr17 73553238 73553493 + 11.34467 NA intron (NM_001015002, intron 3 of 9) intron (NM_001015002, intron 3 of 9) -30774 NR_003587 80022 Hs.390817 NM_001080847 ENSG00000266714 MYO15B MYO15BP myosin XVB pseudogene pseudo 13-PTNLD9-TUMOR_peak_36855 chr3 178389708 178389925 + 11.34467 NA intron (NM_001278911, intron 1 of 4) intron (NM_001278911, intron 1 of 4) 113328 NM_001278911 10242 Hs.478368 NM_005832 HPRD:05557 KCNMB2 - potassium large conductance calcium-activated channel, subfamily M, beta member 2 protein-coding 13-PTNLD9-TUMOR_peak_47862 chr7 72742503 72742703 + 11.34467 NA promoter-TSS (NM_178125) promoter-TSS (NM_178125) 368 NM_003602 8468 Hs.661266 NM_003602 HPRD:05326 FKBP6 FKBP36 FK506 binding protein 6, 36kDa protein-coding 13-PTNLD9-TUMOR_peak_30116 chr2 238398211 238398449 + 11.33967 NA intron (NR_104019, intron 1 of 16) intron (NR_104019, intron 1 of 16) 2468 NM_001281473 79083 Hs.102406 NM_024101 HPRD:09409 MLPH SLAC2-A melanophilin protein-coding 13-PTNLD9-TUMOR_peak_29056 chr2 171742946 171743179 + 11.33967 NA Intergenic Intergenic -41886 NM_001201428 26003 Hs.431317 NM_015530 HPRD:08303 GORASP2 GOLPH6|GRASP55|GRS2|p59 golgi reassembly stacking protein 2, 55kDa protein-coding 13-PTNLD9-TUMOR_peak_15505 chr14 34384412 34384619 + 11.33967 NA Intergenic Intergenic 35769 NM_022073 112399 Hs.135507 NM_022073 HPRD:06972 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia-inducible factor 3 protein-coding 13-PTNLD9-TUMOR_peak_2665 chr1 101719584 101719792 + 11.33967 NA Intergenic Intergenic 17383 NM_001400 1901 Hs.154210 NM_001400 HPRD:03578 S1PR1 CD363|CHEDG1|D1S3362|ECGF1|EDG-1|EDG1|S1P1 sphingosine-1-phosphate receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_12856 chr12 53241589 53241712 + 11.33967 NA intron (NM_001300814, intron 2 of 8) intron (NM_001300814, intron 2 of 8) 417 NM_001300814 196374 Hs.665267 NM_173352 HPRD:17171 KRT78 CK-78|K5B|K78|Kb40 keratin 78 protein-coding 13-PTNLD9-TUMOR_peak_32551 chr21 46266381 46266565 + 11.33967 NA Intergenic Intergenic 27345 NM_004339 754 Hs.474010 NM_004339 HPRD:04807 PTTG1IP C21orf1|C21orf3|PBF pituitary tumor-transforming 1 interacting protein protein-coding 13-PTNLD9-TUMOR_peak_35770 chr3 127293956 127294109 + 11.33967 NA TTS (NR_106883) TTS (NR_106883) 142 NR_106883 102466199 NR_106883 MIR6825 hsa-mir-6825 microRNA 6825 ncRNA 13-PTNLD9-TUMOR_peak_4434 chr1 173238663 173238841 + 11.33967 NA intron (NR_037845, intron 2 of 2) Tigger7|DNA|TcMar-Tigger -62300 NM_003326 7292 Hs.181097 NM_003326 HPRD:04668 TNFSF4 CD134L|CD252|GP34|OX-40L|OX4OL|TXGP1 tumor necrosis factor (ligand) superfamily, member 4 protein-coding 13-PTNLD9-TUMOR_peak_5820 chr1 231531222 231531457 + 11.33967 NA intron (NM_022051, intron 1 of 4) MER119|DNA|hAT-Charlie 29451 NM_022051 54583 Hs.444450 NM_022051 HPRD:06971 EGLN1 C1orf12|ECYT3|HIF-PH2|HIFPH2|HPH-2|HPH2|PHD2|SM20|ZMYND6 egl-9 family hypoxia-inducible factor 1 protein-coding 13-PTNLD9-TUMOR_peak_26229 chr2 18480844 18480990 + 11.33967 NA Intergenic Intergenic 261042 NM_020905 57665 Hs.120319 NM_020905 HPRD:10190 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 (all-trans/9-cis/11-cis) protein-coding 13-PTNLD9-TUMOR_peak_46189 chr6 143380850 143381050 + 11.33967 NA intron (NM_001286587, intron 1 of 6) intron (NM_001286587, intron 1 of 6) 450 NM_001286587 51390 Hs.567501 NM_016108 HPRD:16346 AIG1 AIG-1|dJ95L4.1 androgen-induced 1 protein-coding 13-PTNLD9-TUMOR_peak_22733 chr18 19862567 19862774 + 11.33967 NA Intergenic Intergenic 113272 NM_005257 2627 Hs.514746 NM_005257 HPRD:09043 GATA6 - GATA binding protein 6 protein-coding 13-PTNLD9-TUMOR_peak_39402 chr4 139603919 139604347 + 11.33967 NA Intergenic Intergenic -332780 NM_012118 25819 Hs.639842 NM_012118 HPRD:16337 CCRN4L CCR4L|Ccr4c|NOC CCR4 carbon catabolite repression 4-like (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_4864 chr1 197099906 197100049 + 11.33967 NA intron (NM_001206846, intron 7 of 26) intron (NM_001206846, intron 7 of 26) 15847 NM_018136 259266 Hs.121028 NM_018136 HPRD:08384 ASPM ASP|Calmbp1|MCPH5 asp (abnormal spindle) homolog, microcephaly associated (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_19460 chr16 57927858 57928120 + 11.33967 NA intron (NM_001297, intron 31 of 32) L1MC4a|LINE|L1 77031 NM_001135639 1258 Hs.147062 NM_001297 HPRD:07204 CNGB1 CNCG2|CNCG3L|CNCG4|CNG4|CNGB1B|GAR1|GARP|GARP2|RCNC2|RCNCb|RCNCbeta|RP45 cyclic nucleotide gated channel beta 1 protein-coding 13-PTNLD9-TUMOR_peak_36379 chr3 150089545 150089967 + 11.32955 NA Intergenic Intergenic -37032 NM_014779 9819 Hs.722470 NM_014779 HPRD:11101 TSC22D2 TILZ4a|TILZ4b|TILZ4c TSC22 domain family, member 2 protein-coding 13-PTNLD9-TUMOR_peak_46829 chr7 6483351 6483566 + 11.32955 NA intron (NM_001142936, intron 2 of 12) intron (NM_001142936, intron 2 of 12) 4185 NM_001142936 221955 Hs.487498 NM_139179 HPRD:17324 DAGLB DAGLBETA|KCCR13L diacylglycerol lipase, beta protein-coding 13-PTNLD9-TUMOR_peak_47745 chr7 65580172 65580348 + 11.32597 NA intron (NM_001040648, intron 1 of 2) intron (NM_001040648, intron 1 of 2) 455 NM_014478 27297 Hs.300684 NM_014478 HPRD:12089 CRCP CGRP-RCP|CGRPRCP|RCP|RCP9 CGRP receptor component protein-coding 13-PTNLD9-TUMOR_peak_9163 chr11 14380469 14380818 + 11.32597 NA promoter-TSS (NM_001102669) promoter-TSS (NM_001102669) 87 NM_012250 22800 Hs.502004 NM_012250 HPRD:02518 RRAS2 TC21 related RAS viral (r-ras) oncogene homolog 2 protein-coding 13-PTNLD9-TUMOR_peak_10015 chr11 61515256 61515380 + 11.32597 NA TTS (NM_006133) TTS (NM_006133) -4803 NM_001127392 745 Hs.473109 NM_013279 HPRD:12213 MYRF C11orf9|MRF|Ndt80|pqn-47 myelin regulatory factor protein-coding 13-PTNLD9-TUMOR_peak_4130 chr1 161123582 161123851 + 11.32597 NA 5' UTR (NM_016406, exon 1 of 6) 5' UTR (NM_016406, exon 1 of 6) 182 NM_016406 51506 Hs.301412 NM_016406 HPRD:15643 UFC1 HSPC155 ubiquitin-fold modifier conjugating enzyme 1 protein-coding 13-PTNLD9-TUMOR_peak_47956 chr7 74158260 74158655 + 11.32464 NA intron (NM_033001, intron 19 of 33) MER117|DNA|hAT-Charlie -15201 NR_110044 101926943 Hs.654772 NR_110044 ENSG00000232729 LOC101926943 - uncharacterized LOC101926943 ncRNA 13-PTNLD9-TUMOR_peak_49731 chr7 152917546 152917800 + 11.32282 NA Intergenic Intergenic 191646 NR_125776 103724390 Hs.614280 NR_125776 LINC01287 TCONS_l2_00027522 long intergenic non-protein coding RNA 1287 ncRNA 13-PTNLD9-TUMOR_peak_43055 chr5 172411441 172411553 + 11.32282 NA intron (NM_003945, intron 1 of 3) intron (NM_003945, intron 1 of 3) 734 NM_003945 8992 Hs.484188 NM_003945 ATP6V0E1 ATP6H|ATP6V0E|M9.2|Vma21|Vma21p ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1 protein-coding 13-PTNLD9-TUMOR_peak_43044 chr5 172296157 172296535 + 11.32282 NA intron (NM_001031711, intron 1 of 9) intron (NM_001031711, intron 1 of 9) 35123 NM_001031711 57222 Hs.509163 NM_020462 HPRD:13836 ERGIC1 ERGIC-32|ERGIC32|NET24 endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1 protein-coding 13-PTNLD9-TUMOR_peak_29554 chr2 202305025 202305255 + 11.32141 NA intron (NM_015049, intron 1 of 15) intron (NM_015049, intron 1 of 15) 11179 NM_015049 66008 Hs.152774 NM_015049 HPRD:09547 TRAK2 ALS2CR3|CALS-C|GRIF-1|GRIF1|MILT2|OIP98 trafficking protein, kinesin binding 2 protein-coding 13-PTNLD9-TUMOR_peak_7742 chr10 75118503 75118651 + 11.32141 NA promoter-TSS (NM_145170) promoter-TSS (NM_145170) 40 NM_145170 118491 Hs.591367 NM_145170 HPRD:15583 TTC18 - tetratricopeptide repeat domain 18 protein-coding 13-PTNLD9-TUMOR_peak_41906 chr5 124473305 124473506 + 11.32141 NA intron (NR_109882, intron 2 of 5) MamGypLTR2c|LTR|Gypsy 100881 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 13-PTNLD9-TUMOR_peak_22966 chr18 36131923 36132145 + 11.32141 NA Intergenic Intergenic 894936 NR_036202 100422857 NR_036202 miRBase:MI0015847 MIR4318 - microRNA 4318 ncRNA 13-PTNLD9-TUMOR_peak_51456 chr8 102703108 102703301 + 11.32141 NA intron (NM_001040624, intron 7 of 7) intron (NM_001040624, intron 7 of 7) 100235 NM_032041 83988 Hs.492427 NM_032041 HPRD:09466 NCALD - neurocalcin delta protein-coding 13-PTNLD9-TUMOR_peak_13470 chr12 91807355 91807627 + 11.32141 NA Intergenic MER58A|DNA|hAT-Charlie -230685 NM_001920 1634 Hs.156316 NM_001920 HPRD:00501 DCN CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B decorin protein-coding 13-PTNLD9-TUMOR_peak_10533 chr11 71736303 71736431 + 11.32141 NA intron (NR_104476, intron 4 of 24) AluSx|SINE|Alu 11030 NR_104178 100128494 Hs.713607 NR_104178 LOC100128494 - uncharacterized LOC100128494 ncRNA 13-PTNLD9-TUMOR_peak_43192 chr5 176817591 176817728 + 11.32141 NA TTS (NM_001167579) TTS (NM_001167579) 6227 NM_001167579 6569 Hs.936 NM_003052 HPRD:08918 SLC34A1 FRTS2|NAPI-3|NPHLOP1|NPT2|NPTIIa|SLC11|SLC17A2 solute carrier family 34 (type II sodium/phosphate contransporter), member 1 protein-coding 13-PTNLD9-TUMOR_peak_2564 chr1 95119680 95119855 + 11.32141 NA Intergenic Intergenic -112354 NM_001993 2152 Hs.62192 NM_001993 HPRD:00603 F3 CD142|TF|TFA coagulation factor III (thromboplastin, tissue factor) protein-coding 13-PTNLD9-TUMOR_peak_38966 chr4 102278173 102278440 + 11.32141 NA Intergenic MLT1I|LTR|ERVL-MaLR 9372 NR_033874 90024 Hs.534513 NR_033874 ENSG00000254531 FLJ20021 - uncharacterized LOC90024 ncRNA 13-PTNLD9-TUMOR_peak_2235 chr1 78005043 78005168 + 11.32141 NA intron (NM_012093, intron 13 of 13) intron (NM_012093, intron 13 of 13) 143238 NM_015534 26009 Hs.480506 NM_015534 HPRD:15907 ZZZ3 ATAC1 zinc finger, ZZ-type containing 3 protein-coding 13-PTNLD9-TUMOR_peak_53670 chr9 78098698 78098830 + 11.32141 NA Intergenic L1ME2|LINE|L1 239980 NR_031679 100302287 NR_031679 MIR548H3 MIR548H-3|MIRN548H3|hsa-mir-548h-3 microRNA 548h-3 ncRNA 13-PTNLD9-TUMOR_peak_34196 chr3 32355223 32355409 + 11.32141 NA intron (NM_178868, intron 1 of 3) MER61B|LTR|ERV1 75145 NM_178868 152189 Hs.154986 NM_178868 HPRD:06989 CMTM8 CKLFSF8|CKLFSF8-V2 CKLF-like MARVEL transmembrane domain containing 8 protein-coding 13-PTNLD9-TUMOR_peak_20496 chr17 12359015 12359154 + 11.32141 NA Intergenic L1PA2|LINE|L1 -94201 NR_034145 284034 Hs.376614 NR_034144 HPRD:08176 LINC00670 - long intergenic non-protein coding RNA 670 ncRNA 13-PTNLD9-TUMOR_peak_51808 chr8 123818249 123818424 + 11.32141 NA intron (NM_014943, intron 1 of 3) L2c|LINE|L2 24435 NM_014943 22882 Hs.377090 NM_014943 HPRD:16458 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 13-PTNLD9-TUMOR_peak_7793 chr10 77177394 77177666 + 11.32141 NA Intergenic Intergenic 8615 NR_110304 101929234 Hs.694695 NR_110304 ENSG00000272692 LOC101929234 - uncharacterized LOC101929234 ncRNA 13-PTNLD9-TUMOR_peak_4875 chr1 197936330 197936444 + 11.32141 NA Intergenic Intergenic 49870 NM_020204 56956 Hs.442578 NM_020204 HPRD:07299 LHX9 - LIM homeobox 9 protein-coding 13-PTNLD9-TUMOR_peak_11580 chr11 127732421 127732551 + 11.32141 NA Intergenic LTR32|LTR|ERVL 591521 NR_120580 101929497 Hs.737442 NR_120580 ENSG00000273409 LOC101929497 - uncharacterized LOC101929497 ncRNA 13-PTNLD9-TUMOR_peak_34380 chr3 44277463 44277592 + 11.32141 NA Intergenic Intergenic -5851 NM_001145030 375337 Hs.132125 NM_001145030 ENSG00000173769 TOPAZ1 C3orf77 testis and ovary specific PAZ domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_30160 chr2 240386986 240387174 + 11.32141 NA Intergenic Intergenic -64437 NM_006037 9759 Hs.20516 NM_006037 HPRD:05610 HDAC4 AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA histone deacetylase 4 protein-coding 13-PTNLD9-TUMOR_peak_42932 chr5 168552737 168552928 + 11.32141 NA intron (NM_003062, intron 4 of 35) intron (NM_003062, intron 4 of 35) 112600 NR_109897 728095 Hs.145601 NR_109897 ENSG00000248222 CTB-174D11.1 - uncharacterized LOC728095 ncRNA 13-PTNLD9-TUMOR_peak_17057 chr15 39505605 39505971 + 11.32141 NA Intergenic Intergenic -37097 NM_207445 400360 Hs.376109 NM_207445 HPRD:13437 C15orf54 - chromosome 15 open reading frame 54 protein-coding 13-PTNLD9-TUMOR_peak_10908 chr11 92869983 92870103 + 11.32141 NA Intergenic L1HS|LINE|L1 60578 NM_001286139 120103 Hs.148766 NM_152313 SLC36A4 PAT4 solute carrier family 36 (proton/amino acid symporter), member 4 protein-coding 13-PTNLD9-TUMOR_peak_9641 chr11 44855446 44855592 + 11.32141 NA intron (NM_130783, intron 1 of 8) intron (NM_130783, intron 1 of 8) 69543 NM_130783 90139 Hs.385634 NM_130783 HPRD:17435 TSPAN18 TSPAN tetraspanin 18 protein-coding 13-PTNLD9-TUMOR_peak_46158 chr6 140030141 140030299 + 11.32141 NA Intergenic Intergenic -61990 NR_038399 100132735 Hs.62646 NR_038399 LOC100132735 - uncharacterized LOC100132735 ncRNA 13-PTNLD9-TUMOR_peak_46504 chr6 165424507 165424653 + 11.32141 NA Intergenic MER41C|LTR|ERV1 298531 NM_144980 168090 Hs.144734 NM_144980 HPRD:12844 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 13-PTNLD9-TUMOR_peak_8143 chr10 100220706 100220946 + 11.32141 NA intron (NM_001166244, intron 10 of 10) intron (NM_001166244, intron 10 of 10) -14122 NM_000195 3257 Hs.404568 NM_000195 HPRD:05403 HPS1 HPS Hermansky-Pudlak syndrome 1 protein-coding 13-PTNLD9-TUMOR_peak_17177 chr15 44290948 44291115 + 11.32141 NA intron (NR_104455, intron 1 of 14) intron (NR_104455, intron 1 of 14) -120662 NR_003571 728758 Hs.658099 NR_003571 PIN4P1 - protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_1916 chr1 57298084 57298242 + 11.32141 NA Intergenic Intergenic -12794 NM_001004303 199920 Hs.437655 NM_001004303 HPRD:14120 C1orf168 - chromosome 1 open reading frame 168 protein-coding 13-PTNLD9-TUMOR_peak_15066 chr13 106825650 106825923 + 11.32141 NA Intergenic Intergenic -203125 NR_034119 728192 Hs.559194 NR_034119 LINC00460 - long intergenic non-protein coding RNA 460 ncRNA 13-PTNLD9-TUMOR_peak_16246 chr14 74286686 74286790 + 11.32141 NA Intergenic Intergenic -31796 NM_001146154 145482 Hs.632344 NM_152444 HPRD:09782 PTGR2 HEL-S-298|PGR2|ZADH1 prostaglandin reductase 2 protein-coding 13-PTNLD9-TUMOR_peak_11166 chr11 110122584 110122771 + 11.32141 NA intron (NM_001260495, intron 2 of 8) intron (NM_001260495, intron 2 of 8) 44760 NM_001260495 5962 Hs.263671 NM_002906 HPRD:01534 RDX DFNB24 radixin protein-coding 13-PTNLD9-TUMOR_peak_31247 chr20 45052674 45052791 + 11.32141 NA Intergenic ERVL-E-int|LTR|ERVL -17461 NM_133171 63916 Hs.210469 NM_022086 HPRD:12103 ELMO2 CED-12|CED12|ELMO-2 engulfment and cell motility 2 protein-coding 13-PTNLD9-TUMOR_peak_36328 chr3 149070387 149070497 + 11.32141 NA Intergenic Intergenic -18894 NM_138786 116441 Hs.22026 NM_138786 HPRD:14018 TM4SF18 L6D transmembrane 4 L six family member 18 protein-coding 13-PTNLD9-TUMOR_peak_30985 chr20 36801801 36801962 + 11.32141 NA Intergenic Intergenic -8181 NM_198951 7052 Hs.517033 NM_004613 HPRD:01825 TGM2 G-ALPHA-h|GNAH|HEL-S-45|TG2|TGC transglutaminase 2 protein-coding 13-PTNLD9-TUMOR_peak_19717 chr16 71264542 71264767 + 11.32141 NA promoter-TSS (NM_001198543) promoter-TSS (NM_001198543) -29 NM_001198543 54768 Hs.461229 NM_017558 HPRD:11042 HYDIN CILD5|HYDIN1|HYDIN2|PPP1R31 HYDIN, axonemal central pair apparatus protein protein-coding 13-PTNLD9-TUMOR_peak_14726 chr13 46928946 46929200 + 11.32141 NA intron (NM_001286766, intron 8 of 12) intron (NM_001286766, intron 8 of 12) 32562 NM_001286762 80183 Hs.98117 NM_025113 HPRD:12615 KIAA0226L C13orf18 KIAA0226-like protein-coding 13-PTNLD9-TUMOR_peak_54390 chr9 111798414 111798607 + 11.32141 NA exon (NM_032012, exon 16 of 18) exon (NM_032012, exon 16 of 18) 10068 NR_029506 407036 NR_029506 MIR32 MIRN32|hsa-mir-32|miR-32|miRNA32 microRNA 32 ncRNA 13-PTNLD9-TUMOR_peak_14467 chr13 27628507 27628638 + 11.32141 NA Intergenic L2b|LINE|L2 -71098 NR_046547 100874070 Hs.524923 NR_046547 USP12-AS1 - USP12 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_41986 chr5 129850783 129850941 + 11.32141 NA Intergenic L1P4a|LINE|L1 610339 NM_175856 337876 Hs.213137 NM_175856 HPRD:16766 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 13-PTNLD9-TUMOR_peak_22983 chr18 39520527 39520651 + 11.32141 NA Intergenic Intergenic -14610 NM_002647 5289 Hs.464971 NM_002647 PIK3C3 VPS34|hVps34 phosphatidylinositol 3-kinase, catalytic subunit type 3 protein-coding 13-PTNLD9-TUMOR_peak_50143 chr8 16553542 16553696 + 11.32141 NA Intergenic LTR16A1|LTR|ERVL 306055 NM_019851 26281 Hs.199905 NM_019851 FGF20 FGF-20|RHDA2 fibroblast growth factor 20 protein-coding 13-PTNLD9-TUMOR_peak_9708 chr11 47026351 47026515 + 11.32141 NA intron (NR_103472, intron 2 of 7) intron (NR_103472, intron 2 of 7) 68193 NR_103472 79096 Hs.368296 NM_024113 HPRD:08332 C11orf49 - chromosome 11 open reading frame 49 protein-coding 13-PTNLD9-TUMOR_peak_22717 chr18 19019499 19019849 + 11.32141 NA intron (NM_001142966, intron 8 of 32) intron (NM_001142966, intron 8 of 32) 161019 NM_052911 114799 Hs.464733 NM_052911 HPRD:16868 ESCO1 A930014I12Rik|CTF|ECO1|EFO1|ESO1 establishment of sister chromatid cohesion N-acetyltransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_28046 chr2 111790390 111790500 + 11.32141 NA intron (NM_001142807, intron 15 of 17) intron (NM_001142807, intron 15 of 17) 82720 NR_122074 400997 Hs.652337 NR_122074 HPRD:16971 LOC400997 - uncharacterized LOC400997 ncRNA 13-PTNLD9-TUMOR_peak_26976 chr2 56037131 56037368 + 11.32141 NA Intergenic Intergenic 114049 NM_001039349 2202 Hs.76224 NM_004105 HPRD:03331 EFEMP1 DHRD|DRAD|FBLN3|FBNL|FIBL-3|MLVT|MTLV|S1-5 EGF containing fibulin-like extracellular matrix protein 1 protein-coding 13-PTNLD9-TUMOR_peak_15118 chr13 111199318 111199468 + 11.32141 NA intron (NM_017817, intron 1 of 1) intron (NM_017817, intron 1 of 1) 14678 NM_017817 55647 Hs.743563 NM_017817 HPRD:06694 RAB20 - RAB20, member RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_33671 chr3 9130789 9130911 + 11.32141 NA intron (NM_001033117, intron 3 of 21) AluYc|SINE|Alu -103327 NR_121664 101927416 Hs.475364 NR_121663 LOC101927416 - uncharacterized LOC101927416 ncRNA 13-PTNLD9-TUMOR_peak_46964 chr7 18498582 18498764 + 11.32141 NA intron (NM_001204144, intron 3 of 12) intron (NM_001204144, intron 3 of 12) -36696 NM_001204146 9734 Hs.196054 NM_014707 HPRD:05944 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 13-PTNLD9-TUMOR_peak_14516 chr13 30576770 30577059 + 11.32141 NA Intergenic L1MB3|LINE|L1 66246 NR_033889 440131 Hs.132371 NM_001010918 LINC00544 - long intergenic non-protein coding RNA 544 ncRNA 13-PTNLD9-TUMOR_peak_37654 chr4 3347951 3348089 + 11.32141 NA intron (NM_198229, intron 3 of 17) MER101-int|LTR|ERV1 -23704 NM_198227 6002 Hs.527061 NM_002926 HPRD:03943 RGS12 - regulator of G-protein signaling 12 protein-coding 13-PTNLD9-TUMOR_peak_9070 chr11 11762030 11762291 + 11.32141 NA Intergenic Intergenic 42609 NR_107037 102465870 NR_107037 MIR8070 hsa-mir-8070 microRNA 8070 ncRNA 13-PTNLD9-TUMOR_peak_30346 chr20 4488064 4488184 + 11.32141 NA Intergenic Intergenic -178673 NM_001080121 5621 Hs.472010 NM_000311 HPRD:01453 PRNP ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30 prion protein protein-coding 13-PTNLD9-TUMOR_peak_33477 chr22 47380925 47381164 + 11.32141 NA intron (NM_001284303, intron 7 of 10) intron (NM_001284303, intron 7 of 10) -69106 NR_122047 642757 Hs.632786 NR_122047 TBC1D22A-AS1 - TBC1D22A antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_49991 chr8 6767283 6767587 + 11.32141 NA Intergenic Intergenic 16163 NM_001926 1671 Hs.711 NM_001926 HPRD:02719 DEFA6 DEF6|HD-6 defensin, alpha 6, Paneth cell-specific protein-coding 13-PTNLD9-TUMOR_peak_27139 chr2 67788746 67788950 + 11.32141 NA Intergenic Intergenic 164406 NM_019002 54465 Hs.353022 NM_019002 HPRD:13282 ETAA1 ETAA16 Ewing tumor-associated antigen 1 protein-coding 13-PTNLD9-TUMOR_peak_8056 chr10 97020417 97020589 + 11.32141 NA intron (NM_020992, intron 4 of 6) intron (NM_020992, intron 4 of 6) 30402 NM_020992 9124 Hs.368525 NM_020992 HPRD:09326 PDLIM1 CLIM1|CLP-36|CLP36|HEL-S-112|hCLIM1 PDZ and LIM domain 1 protein-coding 13-PTNLD9-TUMOR_peak_23105 chr18 45680005 45680182 + 11.32141 NA Intergenic Intergenic -16413 NM_001039360 201501 Hs.515388 NM_001039360 ENSG00000184828 ZBTB7C APM-1|APM1|ZBTB36|ZNF857C zinc finger and BTB domain containing 7C protein-coding 13-PTNLD9-TUMOR_peak_19667 chr16 69951829 69951977 + 11.32141 NA intron (NM_001270454, intron 10 of 23) intron (NM_001270454, intron 10 of 23) -6983 NM_199424 11060 Hs.408458 NM_007014 HPRD:03812 WWP2 AIP2|WWp2-like WW domain containing E3 ubiquitin protein ligase 2 protein-coding 13-PTNLD9-TUMOR_peak_25583 chr19 53541109 53541228 + 11.32141 NA Intergenic CpG -6823 NM_001191055 100271846 Hs.420445 NM_001191055 ENSG00000268964 ERVV-2 ENVV2|HERV-V2 endogenous retrovirus group V, member 2 protein-coding 13-PTNLD9-TUMOR_peak_54699 chr9 124960908 124961132 + 11.32141 NA intron (NM_001286828, intron 3 of 3) L1ME5|LINE|L1 22999 NM_001242335 26468 Hs.103137 NM_014368 HPRD:10498 LHX6 LHX6.1 LIM homeobox 6 protein-coding 13-PTNLD9-TUMOR_peak_14858 chr13 73847974 73848151 + 11.32141 NA Intergenic Intergenic 215132 NM_001730 688 Hs.508234 NM_001730 HPRD:04212 KLF5 BTEB2|CKLF|IKLF Kruppel-like factor 5 (intestinal) protein-coding 13-PTNLD9-TUMOR_peak_35352 chr3 111655096 111655223 + 11.32141 NA intron (NM_001134438, intron 6 of 17) intron (NM_001134438, intron 6 of 17) -42564 NM_018394 55347 Hs.477115 NM_018394 HPRD:07751 ABHD10 - abhydrolase domain containing 10 protein-coding 13-PTNLD9-TUMOR_peak_15511 chr14 34512975 34513280 + 11.32141 NA Intergenic Intergenic -92843 NM_022073 112399 Hs.135507 NM_022073 HPRD:06972 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia-inducible factor 3 protein-coding 13-PTNLD9-TUMOR_peak_34664 chr3 52640776 52640988 + 11.32141 NA intron (NM_018313, intron 17 of 29) intron (NM_018313, intron 17 of 29) 70261 NM_001124767 440957 Hs.660577 NM_001124767 SMIM4 C3orf78 small integral membrane protein 4 protein-coding 13-PTNLD9-TUMOR_peak_27339 chr2 75873807 75873990 + 11.32141 NA promoter-TSS (NM_014763) promoter-TSS (NM_014763) -11 NM_014763 9801 Hs.44024 NM_014763 MRPL19 L19mt|MRP-L15|MRP-L19|MRPL15|RLX1|RPML15 mitochondrial ribosomal protein L19 protein-coding 13-PTNLD9-TUMOR_peak_37181 chr3 189484346 189484465 + 11.32141 NA intron (NM_003722, intron 3 of 13) intron (NM_003722, intron 3 of 13) -23044 NM_001114980 8626 Hs.137569 NM_003722 HPRD:04469 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 13-PTNLD9-TUMOR_peak_1739 chr1 50152008 50152121 + 11.32141 NA intron (NM_032785, intron 3 of 13) L1P4e|LINE|L1 -214307 NR_046839 100874313 Hs.551277 NR_046839 AGBL4-IT1 - AGBL4 intronic transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_7870 chr10 81709144 81709346 + 11.32141 NA promoter-TSS (NM_003019) promoter-TSS (NM_003019) -384 NM_003019 6441 Hs.253495 NM_003019 HPRD:01522 SFTPD COLEC7|PSP-D|SFTP4|SP-D surfactant protein D protein-coding 13-PTNLD9-TUMOR_peak_51921 chr8 126606232 126606547 + 11.32141 NA Intergenic Intergenic 161938 NM_001282985 10221 Hs.444947 NM_025195 HPRD:09863 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 13-PTNLD9-TUMOR_peak_50481 chr8 28706226 28706409 + 11.32141 NA intron (NM_018250, intron 3 of 16) intron (NM_018250, intron 3 of 16) 41115 NM_001172562 55756 Hs.162397 NM_018250 HPRD:07706 INTS9 CPSF2L|INT9|RC74 integrator complex subunit 9 protein-coding 13-PTNLD9-TUMOR_peak_43906 chr6 15285134 15285274 + 11.32141 NA intron (NM_001267040, intron 1 of 17) intron (NM_001267040, intron 1 of 17) 36118 NM_001267040 3720 Hs.269059 NM_004973 HPRD:03355 JARID2 JMJ jumonji, AT rich interactive domain 2 protein-coding 13-PTNLD9-TUMOR_peak_16634 chr14 103621478 103621627 + 11.32141 NA Intergenic Intergenic 28888 NM_006291 7127 Hs.525607 NM_006291 HPRD:04487 TNFAIP2 B94|EXOC3L3 tumor necrosis factor, alpha-induced protein 2 protein-coding 13-PTNLD9-TUMOR_peak_31548 chr20 51977852 51977978 + 11.32141 NA intron (NM_173485, intron 2 of 2) intron (NM_173485, intron 2 of 2) 176093 NM_001193421 128553 Hs.473117 NM_173485 HPRD:10730 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 13-PTNLD9-TUMOR_peak_16285 chr14 75688983 75689199 + 11.32141 NA Intergenic Intergenic -45742 NM_006827 10972 Hs.74137 NM_006827 HPRD:12013 TMED10 P24(DELTA)|S31I125|S31III125|TMP21|Tmp-21-I|p23 transmembrane emp24-like trafficking protein 10 (yeast) protein-coding 13-PTNLD9-TUMOR_peak_12787 chr12 52146393 52146548 + 11.32141 NA intron (NM_014191, intron 14 of 26) intron (NM_014191, intron 14 of 26) 79231 NM_001013690 401720 Hs.648218 NM_001013690 FIGNL2 - fidgetin-like 2 protein-coding 13-PTNLD9-TUMOR_peak_15918 chr14 59810472 59810591 + 11.32141 NA intron (NM_001270520, intron 16 of 24) intron (NM_001270520, intron 16 of 24) 80372 NM_014992 23002 Hs.19156 NM_014992 HPRD:09433 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 13-PTNLD9-TUMOR_peak_47284 chr7 40477220 40477416 + 11.32141 NA intron (NM_024728, intron 9 of 14) intron (NM_024728, intron 9 of 14) 302743 NM_001193312 79783 Hs.586313 NM_024728 HPRD:09859 SUGCT C7orf10|DERP13|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 13-PTNLD9-TUMOR_peak_14919 chr13 80851105 80851252 + 11.32141 NA Intergenic Intergenic 63908 NM_005842 10253 Hs.18676 NM_005842 HPRD:03916 SPRY2 hSPRY2 sprouty homolog 2 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_47315 chr7 43058127 43058309 + 11.32141 NA Intergenic Intergenic 86279 NM_031903 64983 Hs.50252 NM_031903 HPRD:14752 MRPL32 L32mt|MRP-L32|bMRP-59b mitochondrial ribosomal protein L32 protein-coding 13-PTNLD9-TUMOR_peak_55871 chrX 52090040 52090254 + 11.32141 NA Intergenic Intergenic -10363 NR_107055 102466880 NR_107055 MIR8088 hsa-mir-8088 microRNA 8088 ncRNA 13-PTNLD9-TUMOR_peak_2688 chr1 105249460 105249710 + 11.32141 NA Intergenic Intergenic 633940 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing, apoptosis associated protein 3 pseudogene pseudo 13-PTNLD9-TUMOR_peak_46591 chr6 170468306 170468431 + 11.32141 NA Intergenic Intergenic 103289 NR_002787 154449 Hs.447751 NR_002787 ENSG00000230960 LOC154449 - uncharacterized LOC154449 ncRNA 13-PTNLD9-TUMOR_peak_24660 chr19 31909096 31909230 + 11.32141 NA Intergenic Intergenic -68973 NM_020856 57616 Hs.278436 NM_020856 HPRD:18351 TSHZ3 TSH3|ZNF537 teashirt zinc finger homeobox 3 protein-coding 13-PTNLD9-TUMOR_peak_28340 chr2 124478548 124478701 + 11.32141 NA Intergenic MLT1D|LTR|ERVL-MaLR -304240 NM_130773 129684 Hs.660653 NM_130773 HPRD:16732 CNTNAP5 caspr5 contactin associated protein-like 5 protein-coding 13-PTNLD9-TUMOR_peak_39936 chr4 183499642 183499834 + 11.32141 NA intron (NM_001080477, intron 2 of 26) intron (NM_001080477, intron 2 of 26) 254601 NM_001080477 55714 Hs.130438 NM_001080477 ENSG00000218336 TENM3 MCOPCB9|ODZ3|TNM3|Ten-m3 teneurin transmembrane protein 3 protein-coding 13-PTNLD9-TUMOR_peak_27100 chr2 65547175 65547403 + 11.32141 NA intron (NM_001128210, intron 4 of 5) intron (NM_001128210, intron 4 of 5) 46642 NM_001128210 200734 Hs.59332 NM_181784 HPRD:18100 SPRED2 Spred-2 sprouty-related, EVH1 domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_43966 chr6 16965181 16965363 + 11.32141 NA Intergenic Intergenic -137217 NM_001190766 401236 Hs.677399 NM_001190766 ENSG00000230873 STMND1 - stathmin domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_27826 chr2 101010702 101010888 + 11.32141 NA intron (NM_004854, intron 6 of 6) intron (NM_004854, intron 6 of 6) 23335 NM_004854 9486 Hs.516370 NM_004854 HPRD:07332 CHST10 HNK-1ST|HNK1ST carbohydrate sulfotransferase 10 protein-coding 13-PTNLD9-TUMOR_peak_7623 chr10 71840626 71840837 + 11.32141 NA intron (NM_018649, intron 2 of 8) AluJb|SINE|Alu 28374 NM_018649 55506 Hs.499953 NM_018649 HPRD:13625 H2AFY2 macroH2A2 H2A histone family, member Y2 protein-coding 13-PTNLD9-TUMOR_peak_7508 chr10 64214542 64214650 + 11.32141 NA intron (NM_199450, intron 3 of 4) L2c|LINE|L2 -65611 NM_199452 22891 Hs.22653 NM_014951 HPRD:06380 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 13-PTNLD9-TUMOR_peak_21724 chr17 61352838 61352971 + 11.32141 NA intron (NM_025185, intron 7 of 24) intron (NM_025185, intron 7 of 24) 165303 NM_001017917 1534 Hs.355264 NM_001915 HPRD:02485 CYB561 CYB561A1|FRRS2 cytochrome b561 protein-coding 13-PTNLD9-TUMOR_peak_46361 chr6 154996861 154996999 + 11.32141 NA Intergenic Intergenic -57582 NM_001286188 22828 Hs.591329 NM_014892 HPRD:11487 SCAF8 RBM16 SR-related CTD-associated factor 8 protein-coding 13-PTNLD9-TUMOR_peak_28841 chr2 159456797 159456988 + 11.32141 NA intron (NM_001005476, intron 3 of 20) intron (NM_001005476, intron 3 of 20) 143416 NM_001005476 8502 Hs.407580 NM_003628 HPRD:05043 PKP4 p0071 plakophilin 4 protein-coding 13-PTNLD9-TUMOR_peak_26523 chr2 32360619 32360767 + 11.32141 NA intron (NM_199436, intron 8 of 15) intron (NM_199436, intron 8 of 15) -30217 NM_001193515 55676 Hs.23248 NM_017964 HPRD:15368 SLC30A6 MST103|MSTP103|ZNT6 solute carrier family 30 (zinc transporter), member 6 protein-coding 13-PTNLD9-TUMOR_peak_54707 chr9 125164770 125164900 + 11.32141 NA Intergenic Intergenic 27234 NM_001271165 5742 Hs.201978 NM_000962 HPRD:07518 PTGS1 COX1|COX3|PCOX1|PES-1|PGG/HS|PGHS-1|PGHS1|PHS1|PTGHS prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) protein-coding 13-PTNLD9-TUMOR_peak_6771 chr10 28670880 28671054 + 11.32141 NA Intergenic Intergenic -92688 NR_107053 102465880 NR_107053 MIR8086 hsa-mir-8086 microRNA 8086 ncRNA 13-PTNLD9-TUMOR_peak_27025 chr2 61998036 61998146 + 11.32141 NA Intergenic Intergenic 83187 NR_037710 84140 Hs.440466 NM_032180 ENSG00000170264 FAM161A RP28 family with sequence similarity 161, member A protein-coding 13-PTNLD9-TUMOR_peak_51961 chr8 127854063 127854295 + 11.32141 NA Intergenic LTR10F|LTR|ERV1 -171220 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_48600 chr7 101245822 101245932 + 11.32141 NA Intergenic Intergenic 26699 NM_138403 93408 Hs.247831 NM_138403 HPRD:17620 MYL10 MYLC2PL|PLRLC myosin, light chain 10, regulatory protein-coding 13-PTNLD9-TUMOR_peak_14729 chr13 47169822 47170008 + 11.32141 NA intron (NM_001164211, intron 1 of 19) intron (NM_001164211, intron 1 of 19) 42619 NM_015116 23143 Hs.507971 NM_015116 HPRD:14307 LRCH1 CHDC1|NP81 leucine-rich repeats and calponin homology (CH) domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_46499 chr6 164235613 164235828 + 11.32141 NA Intergenic Intergenic 400045 NM_001301085 9444 Hs.510324 NM_006775 HPRD:06691 QKI Hqk|QK|QK1|QK3|hqkI QKI, KH domain containing, RNA binding protein-coding 13-PTNLD9-TUMOR_peak_46078 chr6 133890765 133890912 + 11.32141 NA intron (NR_109982, intron 4 of 8) intron (NR_109982, intron 4 of 8) -251447 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 13-PTNLD9-TUMOR_peak_19086 chr16 31870829 31870937 + 11.32141 NA Intergenic LTR13|LTR|ERVK -14196 NM_003414 10308 Hs.460645 NM_003414 HPRD:06883 ZNF267 HZF2 zinc finger protein 267 protein-coding 13-PTNLD9-TUMOR_peak_9560 chr11 36453463 36453639 + 11.32141 NA intron (NM_001160168, intron 3 of 5) intron (NM_001160168, intron 3 of 5) 31004 NM_001160169 79899 Hs.19987 NM_024841 HPRD:07854 PRR5L PROTOR2 proline rich 5 like protein-coding 13-PTNLD9-TUMOR_peak_9994 chr11 61082849 61083091 + 11.32141 NA intron (NM_001923, intron 12 of 26) intron (NM_001923, intron 12 of 26) -17684 NM_015533 26007 Hs.6278 NM_015533 HPRD:13180 DAK NET45 dihydroxyacetone kinase 2 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_4880 chr1 198412627 198412794 + 11.32141 NA Intergenic Intergenic 97365 NM_133262 127124 Hs.127743 NM_133262 HPRD:16526 ATP6V1G3 ATP6G3|Vma10 ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G3 protein-coding 13-PTNLD9-TUMOR_peak_11574 chr11 127355515 127355803 + 11.32141 NA Intergenic Intergenic 214694 NR_120580 101929497 Hs.737442 NR_120580 ENSG00000273409 LOC101929497 - uncharacterized LOC101929497 ncRNA 13-PTNLD9-TUMOR_peak_22254 chr17 79116665 79116781 + 11.32141 NA intron (NM_001080395, intron 1 of 13) intron (NM_001080395, intron 1 of 13) -9615 NR_031652 100302229 NR_031652 MIR1250 MIRN1250|hsa-mir-1250 microRNA 1250 ncRNA 13-PTNLD9-TUMOR_peak_40661 chr5 38720135 38720304 + 11.32141 NA intron (NR_104631, intron 1 of 4) intron (NR_104631, intron 1 of 4) 156 NR_104631 101926904 Hs.634191 NR_104631 LINC01265 - long intergenic non-protein coding RNA 1265 ncRNA 13-PTNLD9-TUMOR_peak_41726 chr5 111016478 111016968 + 11.32141 NA intron (NR_040093, intron 2 of 6) intron (NR_040093, intron 2 of 6) 75225 NM_001142483 9315 Hs.36053 NM_004772 HPRD:09545 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 13-PTNLD9-TUMOR_peak_22756 chr18 20436917 20437125 + 11.32141 NA Intergenic Intergenic -70221 NR_110782 101927571 Hs.335020 NR_110782 ENSG00000266850 LOC101927571 - uncharacterized LOC101927571 ncRNA 13-PTNLD9-TUMOR_peak_43481 chr6 2892060 2892219 + 11.32141 NA exon (NM_004155, exon 6 of 7) exon (NM_004155, exon 6 of 7) 7917 NR_110841 101927730 Hs.713231 NR_110841 LOC101927730 - uncharacterized LOC101927730 ncRNA 13-PTNLD9-TUMOR_peak_20781 chr17 27568079 27568278 + 11.32141 NA Intergenic Intergenic -5697 NM_005208 1411 Hs.46275 NM_005208 HPRD:00429 CRYBA1 CRYB1|CTRCT10 crystallin, beta A1 protein-coding 13-PTNLD9-TUMOR_peak_9585 chr11 39387442 39387632 + 11.32141 NA Intergenic Intergenic 717129 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 13-PTNLD9-TUMOR_peak_10430 chr11 68988075 68988411 + 11.32141 NA Intergenic Intergenic -49213 NR_104161 338694 Hs.564235 NR_104161 ENSG00000261070 LOC338694 - uncharacterized LOC338694 ncRNA 13-PTNLD9-TUMOR_peak_6913 chr10 34506458 34506659 + 11.32141 NA intron (NM_001184791, intron 18 of 20) intron (NM_001184791, intron 18 of 20) -444950 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 13-PTNLD9-TUMOR_peak_14632 chr13 40857737 40858127 + 11.32141 NA Intergenic Intergenic -63293 NR_033877 400123 Hs.577960 NR_033877 LINC00548 - long intergenic non-protein coding RNA 548 ncRNA 13-PTNLD9-TUMOR_peak_39319 chr4 129244245 129244480 + 11.32141 NA Intergenic Intergenic -34378 NM_006320 10424 Hs.507910 NM_006320 HPRD:09665 PGRMC2 DG6|PMBP progesterone receptor membrane component 2 protein-coding 13-PTNLD9-TUMOR_peak_42437 chr5 142421689 142421849 + 11.32141 NA intron (NM_015071, intron 14 of 22) intron (NM_015071, intron 14 of 22) -173294 NR_046680 100874239 Hs.570896 NR_046680 ENSG00000226272 ARHGAP26-AS1 - ARHGAP26 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_40469 chr5 19531816 19532032 + 11.32141 NA intron (NM_001291956, intron 11 of 14) intron (NM_001291956, intron 11 of 14) 354457 NM_001291957 1016 Hs.317632 NM_004934 HPRD:04314 CDH18 CDH14|CDH14L|CDH24 cadherin 18, type 2 protein-coding 13-PTNLD9-TUMOR_peak_6802 chr10 29907449 29907775 + 11.32141 NA intron (NM_003174, intron 3 of 35) intron (NM_003174, intron 3 of 35) 16289 NM_021738 6840 Hs.499209 NM_003174 HPRD:04992 SVIL - supervillin protein-coding 13-PTNLD9-TUMOR_peak_47162 chr7 30246144 30246306 + 11.32141 NA Intergenic Intergenic 71673 NM_152793 222166 Hs.200100 NM_152793 HPRD:07635 MTURN C7orf41|Ells1 maturin, neural progenitor differentiation regulator homolog (Xenopus) protein-coding 13-PTNLD9-TUMOR_peak_14687 chr13 44733751 44733998 + 11.32141 NA intron (NM_024058, intron 2 of 2) intron (NM_024058, intron 2 of 2) -1516 NR_046843 100874377 Hs.652552 NR_046843 SMIM2-IT1 C13orf44-IT1 SMIM2 intronic transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_40562 chr5 33343895 33344011 + 11.32141 NA Intergenic Intergenic -96849 NM_001258437 6897 Hs.481860 NM_152295 HPRD:01762 TARS ThrRS threonyl-tRNA synthetase protein-coding 13-PTNLD9-TUMOR_peak_29092 chr2 173205988 173206130 + 11.32141 NA Intergenic Intergenic -86255 NM_000210 3655 Hs.133397 NM_000210 HPRD:00945 ITGA6 CD49f|ITGA6B|VLA-6 integrin, alpha 6 protein-coding 13-PTNLD9-TUMOR_peak_5127 chr1 204140924 204141158 + 11.32141 NA Intergenic Intergenic -5576 NM_000537 5972 Hs.3210 NM_000537 HPRD:01564 REN HNFJ2 renin protein-coding 13-PTNLD9-TUMOR_peak_41745 chr5 111972091 111972335 + 11.32141 NA Intergenic L2b|LINE|L2 8080 NR_104672 102467214 Hs.124613 NR_104672 LOC102467214 - uncharacterized LOC102467214 ncRNA 13-PTNLD9-TUMOR_peak_21514 chr17 50105116 50105250 + 11.32141 NA intron (NM_001082533, intron 3 of 9) MIRb|SINE|MIR 130949 NM_020178 56934 Hs.463466 NM_020178 HPRD:05224 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase X protein-coding 13-PTNLD9-TUMOR_peak_8489 chr10 123313389 123313752 + 11.32141 NA intron (NR_073009, intron 2 of 16) intron (NR_073009, intron 2 of 16) 39911 NM_001144913 2263 Hs.533683 NM_000141 HPRD:01492 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 13-PTNLD9-TUMOR_peak_29981 chr2 230931823 230931945 + 11.32141 NA intron (NM_152527, intron 1 of 4) intron (NM_152527, intron 1 of 4) 1831 NM_152527 151473 Hs.504317 NM_152527 HPRD:15347 SLC16A14 MCT14 solute carrier family 16, member 14 protein-coding 13-PTNLD9-TUMOR_peak_51962 chr8 127860899 127861057 + 11.32141 NA Intergenic Intergenic -164421 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_41224 chr5 71683960 71684128 + 11.32141 NA Intergenic Intergenic 67850 NM_001284404 79810 Hs.126906 NM_024754 HPRD:15193 PTCD2 - pentatricopeptide repeat domain 2 protein-coding 13-PTNLD9-TUMOR_peak_2709 chr1 108190778 108190917 + 11.32141 NA intron (NM_006113, intron 19 of 26) intron (NM_006113, intron 19 of 26) 40279 NM_001079874 10451 Hs.267659 NM_006113 HPRD:05706 VAV3 - vav 3 guanine nucleotide exchange factor protein-coding 13-PTNLD9-TUMOR_peak_38184 chr4 38093335 38093492 + 11.32141 NA intron (NM_001253912, intron 15 of 20) intron (NM_001253912, intron 15 of 20) -18389 NM_001253913 23216 Hs.176503 NM_015173 HPRD:18161 TBC1D1 TBC|TBC1 TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1 protein-coding 13-PTNLD9-TUMOR_peak_46908 chr7 12963720 12963940 + 11.32141 NA Intergenic Intergenic 236919 NM_005738 10124 Hs.245540 NM_005738 HPRD:11987 ARL4A ARL4 ADP-ribosylation factor-like 4A protein-coding 13-PTNLD9-TUMOR_peak_14413 chr13 22211476 22211695 + 11.32141 NA Intergenic MER5A|DNA|hAT-Charlie -33230 NM_152726 221154 Hs.412103 NM_152726 HPRD:16852 MICU2 1110008L20Rik|EFHA1 mitochondrial calcium uptake 2 protein-coding 13-PTNLD9-TUMOR_peak_7826 chr10 79679538 79679713 + 11.32141 NA intron (NM_004747, intron 1 of 31) intron (NM_004747, intron 1 of 31) 6723 NM_004747 9231 Hs.652690 NM_004747 HPRD:04972 DLG5 LP-DLG|P-DLG5|PDLG discs, large homolog 5 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_38450 chr4 56759820 56760325 + 11.32141 NA intron (NM_001024924, intron 15 of 18) intron (NM_001024924, intron 15 of 18) 40256 NM_178237 55763 Hs.269665 NM_018261 HPRD:07615 EXOC1 BM-102|SEC3|SEC3L1|SEC3P exocyst complex component 1 protein-coding 13-PTNLD9-TUMOR_peak_8779 chr11 1320495 1320664 + 11.32141 NA intron (NM_019009, intron 1 of 5) intron (NM_019009, intron 1 of 5) 10313 NM_019009 54472 Hs.368527 NM_019009 HPRD:05887 TOLLIP IL-1RAcPIP toll interacting protein protein-coding 13-PTNLD9-TUMOR_peak_14937 chr13 91097491 91097732 + 11.32141 NA Intergenic MLT2D|LTR|ERVL -47931 NR_120414 101927224 Hs.385801 NR_120414 LINC01049 - long intergenic non-protein coding RNA 1049 ncRNA 13-PTNLD9-TUMOR_peak_50890 chr8 49236862 49236989 + 11.32141 NA Intergenic Intergenic -227202 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 13-PTNLD9-TUMOR_peak_12359 chr12 26801570 26801712 + 11.32141 NA intron (NM_002223, intron 21 of 56) intron (NM_002223, intron 21 of 56) 184490 NM_002223 3709 Hs.512235 NM_002223 HPRD:02536 ITPR2 CFAP48|IP3R2 inositol 1,4,5-trisphosphate receptor, type 2 protein-coding 13-PTNLD9-TUMOR_peak_18624 chr16 16014032 16014147 + 11.32141 NA Intergenic AluJb|SINE|Alu -29345 NM_004996 4363 Hs.391464 NM_004996 HPRD:01153 ABCC1 ABC29|ABCC|GS-X|MRP|MRP1 ATP-binding cassette, sub-family C (CFTR/MRP), member 1 protein-coding 13-PTNLD9-TUMOR_peak_22964 chr18 35836471 35836593 + 11.32141 NA Intergenic Intergenic 599434 NR_036202 100422857 NR_036202 miRBase:MI0015847 MIR4318 - microRNA 4318 ncRNA 13-PTNLD9-TUMOR_peak_16880 chr15 29396053 29396251 + 11.32141 NA intron (NM_001130414, intron 8 of 12) CpG 165868 NM_138704 56160 Hs.94011 NM_138704 HPRD:10503 NDNL2 HCA4|MAGEG1|MAGEL3|NSE3|NSMCE3 necdin-like 2 protein-coding 13-PTNLD9-TUMOR_peak_15054 chr13 105223996 105224179 + 11.32141 NA Intergenic Intergenic -894129 NM_001161814 267012 Hs.381382 NM_172370 HPRD:07591 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 13-PTNLD9-TUMOR_peak_40704 chr5 41371904 41372115 + 11.32141 NA intron (NM_001005473, intron 2 of 2) intron (NM_001005473, intron 2 of 2) -110469 NM_001115131 729 Hs.481992 NM_000065 HPRD:01956 C6 - complement component 6 protein-coding 13-PTNLD9-TUMOR_peak_43610 chr6 5190833 5190990 + 11.32141 NA intron (NM_001164840, intron 2 of 2) Tigger3|DNA|TcMar-Tigger -42355 NR_037462 100500900 NR_037462 MIR3691 - microRNA 3691 ncRNA 13-PTNLD9-TUMOR_peak_30397 chr20 10055285 10055457 + 11.32141 NA intron (NR_040710, intron 3 of 4) intron (NR_040710, intron 3 of 4) 39674 NM_198798 63926 Hs.70903 NM_022096 HPRD:10652 ANKEF1 ANKRD5|dJ839B4.6 ankyrin repeat and EF-hand domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_38455 chr4 57173580 57173866 + 11.32141 NA exon (NM_020722, exon 5 of 11) exon (NM_020722, exon 5 of 11) 79951 NM_001286669 132949 Hs.104347 NM_181806 HPRD:12398 AASDH ACSF4|LYS2|NRPS1098|NRPS998 aminoadipate-semialdehyde dehydrogenase protein-coding 13-PTNLD9-TUMOR_peak_17692 chr15 75953518 75953706 + 11.32141 NA Intergenic Intergenic 12264 NM_153271 257364 Hs.8705 NM_153271 SNX33 SH3PX3|SH3PXD3C|SNX30 sorting nexin 33 protein-coding 13-PTNLD9-TUMOR_peak_444 chr1 12112175 12112353 + 11.32141 NA Intergenic Intergenic -11170 NM_001243 943 Hs.1314 NM_001243 HPRD:01074 TNFRSF8 CD30|D1S166E|Ki-1 tumor necrosis factor receptor superfamily, member 8 protein-coding 13-PTNLD9-TUMOR_peak_5894 chr1 234569453 234569604 + 11.32141 NA intron (NM_005646, intron 13 of 29) L2c|LINE|L2 45321 NM_005646 6894 Hs.498115 NM_005646 HPRD:05445 TARBP1 TRM3|TRP-185|TRP185 TAR (HIV-1) RNA binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_38130 chr4 25971863 25972097 + 11.32141 NA Intergenic Intergenic 56166 NM_001145432 389203 Hs.479386 NM_001145432 ENSG00000250317 SMIM20 C4orf52 small integral membrane protein 20 protein-coding 13-PTNLD9-TUMOR_peak_16388 chr14 85903621 85903802 + 11.32141 NA Intergenic Intergenic 43452 NR_102738 100996280 Hs.135735 NR_102737 ENSG00000259107 LINC00911 - long intergenic non-protein coding RNA 911 ncRNA 13-PTNLD9-TUMOR_peak_33021 chr22 27283534 27283744 + 11.32141 NA Intergenic Intergenic -15616 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000223704 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 13-PTNLD9-TUMOR_peak_55640 chrX 22544573 22544784 + 11.32141 NA intron (NR_073010, intron 4 of 5) intron (NR_073010, intron 4 of 5) 253648 NM_152577 158506 Hs.132485 NM_152577 HPRD:06545 ZNF645 CT138|HAKAIL zinc finger protein 645 protein-coding 13-PTNLD9-TUMOR_peak_27812 chr2 100096993 100097120 + 11.32141 NA intron (NM_016316, intron 1 of 22) intron (NM_016316, intron 1 of 22) 9424 NM_016316 51455 Hs.443077 NM_016316 HPRD:16202 REV1 REV1L REV1, polymerase (DNA directed) protein-coding 13-PTNLD9-TUMOR_peak_13850 chr12 111316459 111316629 + 11.32141 NA intron (NM_001286243, intron 4 of 10) L1MA9|LINE|L1 31780 NM_152591 160762 Hs.437141 NM_152591 HPRD:08765 CCDC63 ODA5 coiled-coil domain containing 63 protein-coding 13-PTNLD9-TUMOR_peak_15861 chr14 56656122 56656328 + 11.32141 NA intron (NM_021255, intron 2 of 5) intron (NM_021255, intron 2 of 5) 71132 NM_021255 57161 Hs.657926 NM_021255 HPRD:17835 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 13-PTNLD9-TUMOR_peak_46047 chr6 129634110 129634310 + 11.32141 NA exon (NM_000426, exon 23 of 65) exon (NM_000426, exon 23 of 65) 397160 NM_033515 93663 Hs.486458 NM_033515 HPRD:12474 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 13-PTNLD9-TUMOR_peak_34343 chr3 42485457 42485609 + 11.32141 NA Intergenic Intergenic -33468 NM_144634 131375 Hs.234895 NM_144634 HPRD:14338 LYZL4 1810009N24Rik|LYC4 lysozyme-like 4 protein-coding 13-PTNLD9-TUMOR_peak_35072 chr3 85787158 85787332 + 11.32141 NA intron (NM_001256504, intron 3 of 10) intron (NM_001256504, intron 3 of 10) 11613 NM_153184 253559 Hs.164578 NM_153184 HPRD:11046 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 13-PTNLD9-TUMOR_peak_18700 chr16 20125801 20125957 + 11.32141 NA Intergenic Intergenic -40779 NM_001002911 124274 Hs.446875 NM_001002911 GPR139 GPRg1|PGR3 G protein-coupled receptor 139 protein-coding 13-PTNLD9-TUMOR_peak_47160 chr7 30182478 30182626 + 11.32141 NA intron (NM_152793, intron 1 of 2) L4|LINE|RTE 8000 NM_152793 222166 Hs.200100 NM_152793 HPRD:07635 MTURN C7orf41|Ells1 maturin, neural progenitor differentiation regulator homolog (Xenopus) protein-coding 13-PTNLD9-TUMOR_peak_29453 chr2 197770330 197770603 + 11.32141 NA intron (NM_024989, intron 4 of 26) L1HS|LINE|L1 20988 NM_024989 80055 Hs.229988 NM_024989 HPRD:10147 PGAP1 Bst1|ISPD3024|MRT42|SPG67 post-GPI attachment to proteins 1 protein-coding 13-PTNLD9-TUMOR_peak_43435 chr6 1717196 1717350 + 11.32141 NA intron (NM_001500, intron 9 of 10) intron (NM_001500, intron 9 of 10) 106592 NM_001453 2296 Hs.348883 NM_001453 HPRD:03054 FOXC1 ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3 forkhead box C1 protein-coding 13-PTNLD9-TUMOR_peak_44928 chr6 39461094 39461273 + 11.32141 NA intron (NM_001289021, intron 12 of 21) L2a|LINE|L2 -62033 NM_001289024 221458 Hs.588202 NM_145027 HPRD:10786 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 13-PTNLD9-TUMOR_peak_23676 chr19 2867199 2867388 + 11.32141 NA promoter-TSS (NM_024967) promoter-TSS (NM_024967) -40 NM_024967 80032 Hs.287433 NM_024967 HPRD:15839 ZNF556 - zinc finger protein 556 protein-coding 13-PTNLD9-TUMOR_peak_35290 chr3 108800907 108801040 + 11.32141 NA intron (NM_014429, intron 8 of 27) L1MA4|LINE|L1 36020 NM_014429 27136 Hs.591296 NM_014429 HPRD:04439 MORC1 CT33|MORC|ZCW6 MORC family CW-type zinc finger 1 protein-coding 13-PTNLD9-TUMOR_peak_56082 chrX 68329624 68329874 + 11.32141 NA Intergenic Intergenic 55616 NM_145119 64219 Hs.522679 NM_022368 HPRD:02335 PJA1 PRAJA1|RNF70 praja ring finger 1, E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_20531 chr17 15931550 15931696 + 11.32141 NA 3' UTR (NM_017775, exon 10 of 10) 3' UTR (NM_017775, exon 10 of 10) -28617 NM_001042697 125150 Hs.593985 NM_001042697 ENSG00000214941 ZSWIM7 SWS1 zinc finger, SWIM-type containing 7 protein-coding 13-PTNLD9-TUMOR_peak_35222 chr3 104078493 104078669 + 11.32141 NA Intergenic Intergenic -132476 NR_030330 693127 NR_030330 miRBase:MI0003612 MIR548A3 MIRN548A3 microRNA 548a-3 ncRNA 13-PTNLD9-TUMOR_peak_51812 chr8 123981947 123982081 + 11.32141 NA intron (NM_014943, intron 3 of 3) intron (NM_014943, intron 3 of 3) 72649 NM_024295 79139 Hs.241576 NM_024295 HPRD:12302 DERL1 DER-1|DER1 derlin 1 protein-coding 13-PTNLD9-TUMOR_peak_590 chr1 19777469 19777578 + 11.32141 NA intron (NM_001206541, intron 1 of 8) intron (NM_001206541, intron 1 of 8) 33678 NM_001282162 832 Hs.432760 NM_004930 HPRD:11872 CAPZB CAPB|CAPPB|CAPZ capping protein (actin filament) muscle Z-line, beta protein-coding 13-PTNLD9-TUMOR_peak_819 chr1 27755212 27755330 + 11.32141 NA exon (NM_006990, exon 2 of 9) exon (NM_006990, exon 2 of 9) 36123 NM_005281 2827 Hs.66542 NM_005281 HPRD:02587 GPR3 ACCA G protein-coupled receptor 3 protein-coding 13-PTNLD9-TUMOR_peak_34227 chr3 34405929 34406047 + 11.32141 NA Intergenic Intergenic 565925 NM_001162429 10015 Hs.475896 NM_013374 HPRD:06425 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 13-PTNLD9-TUMOR_peak_32313 chr21 39832167 39832324 + 11.32141 NA intron (NM_001243432, intron 3 of 11) intron (NM_001243432, intron 3 of 11) 38183 NM_001136155 2078 Hs.473819 NM_004449 HPRD:01298 ERG erg-3|p55 v-ets avian erythroblastosis virus E26 oncogene homolog protein-coding 13-PTNLD9-TUMOR_peak_26475 chr2 30034420 30034627 + 11.32141 NA intron (NM_004304, intron 1 of 28) intron (NM_004304, intron 1 of 28) 109954 NM_004304 238 Hs.654469 NM_004304 HPRD:00104 ALK CD246|NBLST3 anaplastic lymphoma receptor tyrosine kinase protein-coding 13-PTNLD9-TUMOR_peak_50973 chr8 55474015 55474175 + 11.32141 NA Intergenic Intergenic -54532 NM_006269 6101 Hs.732820 NM_006269 HPRD:04896 RP1 DCDC4A|ORP1 retinitis pigmentosa 1 (autosomal dominant) protein-coding 13-PTNLD9-TUMOR_peak_8342 chr10 112625339 112625509 + 11.32141 NA Intergenic Intergenic 5238 NR_026932 282997 Hs.599931 NR_026932 PDCD4-AS1 - PDCD4 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_7637 chr10 72124289 72124522 + 11.32141 NA intron (NM_001278214, intron 1 of 3) intron (NM_001278214, intron 1 of 3) 12130 NM_001278213 55222 Hs.7778 NM_018205 HPRD:14314 LRRC20 - leucine rich repeat containing 20 protein-coding 13-PTNLD9-TUMOR_peak_46355 chr6 154665071 154665306 + 11.32141 NA intron (NM_001130700, intron 1 of 11) LTR9B|LTR|ERV1 12712 NM_015553 26034 Hs.146100 NM_015553 HPRD:17851 IPCEF1 PIP3-E interaction protein for cytohesin exchange factors 1 protein-coding 13-PTNLD9-TUMOR_peak_46509 chr6 166526183 166526325 + 11.32141 NA Intergenic Intergenic 55903 NM_001270484 6862 Hs.389457 NM_003181 HPRD:03236 T SAVA|TFT T, brachyury homolog (mouse) protein-coding 13-PTNLD9-TUMOR_peak_17349 chr15 58553074 58553481 + 11.32141 NA Intergenic Intergenic 122869 NM_020980 366 Hs.104624 NM_020980 HPRD:04223 AQP9 AQP-9|HsT17287|SSC1 aquaporin 9 protein-coding 13-PTNLD9-TUMOR_peak_56308 chrX 106045731 106045897 + 11.32141 NA promoter-TSS (NM_017752) promoter-TSS (NM_017752) -105 NM_198881 54885 Hs.351798 NM_017752 HPRD:06529 TBC1D8B - TBC1 domain family, member 8B (with GRAM domain) protein-coding 13-PTNLD9-TUMOR_peak_50925 chr8 52921109 52921280 + 11.32141 NA Intergenic Intergenic -109448 NM_001286783 115294 Hs.671268 NM_052937 HPRD:08313 PCMTD1 - protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_12669 chr12 48137921 48138074 + 11.32141 NA intron (NM_001098531, intron 16 of 27) intron (NM_001098531, intron 16 of 27) 14184 NM_001098532 10411 Hs.8578 NM_006105 HPRD:06928 RAPGEF3 CAMP-GEFI|EPAC|EPAC1|HSU79275|bcm910 Rap guanine nucleotide exchange factor (GEF) 3 protein-coding 13-PTNLD9-TUMOR_peak_1060 chr1 35063549 35063744 + 11.32141 NA Intergenic Intergenic -157002 NM_005268 2709 Hs.198249 NM_005268 HPRD:06840 GJB5 CX31.1 gap junction protein, beta 5, 31.1kDa protein-coding 13-PTNLD9-TUMOR_peak_21107 chr17 40976254 40976438 + 11.32141 NA promoter-TSS (NM_003766) promoter-TSS (NM_003766) -36 NM_003766 8678 Hs.716464 NM_003766 HPRD:05087 BECN1 ATG6|VPS30|beclin1 beclin 1, autophagy related protein-coding 13-PTNLD9-TUMOR_peak_14567 chr13 33825382 33825569 + 11.32141 NA intron (NM_001243476, intron 5 of 17) intron (NM_001243476, intron 5 of 17) -26216 NR_046693 100874241 Hs.662433 NR_046693 ENSG00000236581 STARD13-AS STARD13-AS2 STARD13 antisense RNA ncRNA 13-PTNLD9-TUMOR_peak_33401 chr22 44194506 44194757 + 11.32141 NA intron (NM_022785, intron 2 of 31) intron (NM_022785, intron 2 of 31) 13586 NM_022785 64800 Hs.658996 NM_022785 HPRD:13391 EFCAB6 DJBP|HSCBCIP1|dJ185D5.1 EF-hand calcium binding domain 6 protein-coding 13-PTNLD9-TUMOR_peak_26166 chr2 12728246 12728612 + 11.32141 NA Intergenic MER44B|DNA|TcMar-Tigger -128569 NR_027303 28951 Hs.467751 NM_021643 HPRD:18224 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 13-PTNLD9-TUMOR_peak_13482 chr12 93591937 93592197 + 11.32141 NA intron (NR_040096, intron 3 of 4) intron (NR_040096, intron 3 of 4) 23925 NR_120492 102724933 Hs.663947 NR_120492 LOC102724933 - uncharacterized LOC102724933 ncRNA 13-PTNLD9-TUMOR_peak_46474 chr6 161883249 161883450 + 11.32141 NA intron (NM_004562, intron 9 of 11) intron (NM_004562, intron 9 of 11) -188242 NM_020133 56895 Hs.353175 NM_020133 HPRD:12437 AGPAT4 1-AGPAT4|LPAAT-delta|dJ473J16.2 1-acylglycerol-3-phosphate O-acyltransferase 4 protein-coding 13-PTNLD9-TUMOR_peak_41464 chr5 86416431 86416659 + 11.32141 NA intron (NR_105018, intron 1 of 3) intron (NR_105018, intron 1 of 3) 580 NR_105018 101929380 NR_105018 LOC101929380 - uncharacterized LOC101929380 ncRNA 13-PTNLD9-TUMOR_peak_55749 chrX 41350866 41351039 + 11.32141 NA Intergenic Intergenic 44239 NM_022567 60506 Hs.302019 NM_022567 HPRD:02232 NYX CLRP|CSNB1|CSNB1A|CSNB4|NBM1 nyctalopin protein-coding 13-PTNLD9-TUMOR_peak_50552 chr8 31497664 31497797 + 11.32141 NA exon (NM_013962, exon 1 of 5) exon (NM_013962, exon 1 of 5) 462 NM_013962 3084 Hs.453951 NM_004495 HPRD:00802 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 13-PTNLD9-TUMOR_peak_56070 chrX 67791690 67791887 + 11.32141 NA Intergenic Intergenic 73164 NM_173834 286451 Hs.82719 NM_173834 HPRD:06639 YIPF6 FinGER6 Yip1 domain family, member 6 protein-coding 13-PTNLD9-TUMOR_peak_6757 chr10 27772310 27772424 + 11.32141 NA Intergenic Intergenic -20736 NR_046172 22931 Hs.406799 NM_021252 HPRD:03731 RAB18 RAB18LI1|WARBM3 RAB18, member RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_31335 chr20 47458468 47458621 + 11.32141 NA Intergenic Intergenic -14124 NM_020820 57580 Hs.153310 NM_020820 HPRD:06066 PREX1 P-REX1 phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1 protein-coding 13-PTNLD9-TUMOR_peak_22999 chr18 40614666 40614911 + 11.32141 NA intron (NM_002930, intron 1 of 4) MER31B|LTR|ERV1 80869 NM_001272077 6014 Hs.464985 NM_002930 HPRD:15253 RIT2 RIBA|RIN|ROC2 Ras-like without CAAX 2 protein-coding 13-PTNLD9-TUMOR_peak_46497 chr6 164167023 164167262 + 11.32141 NA Intergenic Intergenic 331467 NM_001301085 9444 Hs.510324 NM_006775 HPRD:06691 QKI Hqk|QK|QK1|QK3|hqkI QKI, KH domain containing, RNA binding protein-coding 13-PTNLD9-TUMOR_peak_43533 chr6 3428050 3428334 + 11.32141 NA intron (NM_001286456, intron 1 of 3) intron (NM_001286456, intron 1 of 3) 17055 NR_104448 63027 Hs.713588 NM_015482 HPRD:12904 SLC22A23 C6orf85 solute carrier family 22, member 23 protein-coding 13-PTNLD9-TUMOR_peak_17155 chr15 43559166 43559368 + 11.32141 NA promoter-TSS (NM_004245) promoter-TSS (NM_004245) -212 NM_201631 9333 Hs.129719 NM_004245 HPRD:11949 TGM5 TGASE5|TGASEX|TGM6|TGMX|TGX transglutaminase 5 protein-coding 13-PTNLD9-TUMOR_peak_41557 chr5 95414869 95415046 + 11.32141 NA TTS (NR_030309) TTS (NR_030309) 115 NR_030309 693168 NR_030309 miRBase:MI0003590 MIR583 MIRN583|hsa-mir-583 microRNA 583 ncRNA 13-PTNLD9-TUMOR_peak_17561 chr15 70449424 70449552 + 11.32141 NA Intergenic Intergenic -59232 NM_001105192 7090 Hs.287362 NM_005078 HPRD:02558 TLE3 ESG|ESG3|GRG3|HsT18976 transducin-like enhancer of split 3 protein-coding 13-PTNLD9-TUMOR_peak_55545 chrX 13416634 13416918 + 11.32141 NA Intergenic Intergenic 63416 NR_045260 100133123 Hs.449499 NR_045260 ENSG00000226985 LINC01203 - long intergenic non-protein coding RNA 1203 ncRNA 13-PTNLD9-TUMOR_peak_2053 chr1 64197346 64197491 + 11.32141 NA Intergenic Intergenic -42272 NM_005012 4919 Hs.128753 NM_005012 HPRD:03821 ROR1 NTRKR1|dJ537F10.1 receptor tyrosine kinase-like orphan receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_45197 chr6 46040737 46040884 + 11.32141 NA intron (NM_001114086, intron 1 of 5) intron (NM_001114086, intron 1 of 5) 7275 NM_001114086 53405 Hs.485489 NM_016929 HPRD:06292 CLIC5 MST130|MSTP130 chloride intracellular channel 5 protein-coding 13-PTNLD9-TUMOR_peak_34688 chr3 53604838 53604995 + 11.32141 NA intron (NM_000720, intron 3 of 48) L2c|LINE|L2 75840 NM_000720 776 Hs.476358 NM_000720 HPRD:00247 CACNA1D CACH3|CACN4|CACNL1A2|CCHL1A2|Cav1.3|PASNA|SANDD calcium channel, voltage-dependent, L type, alpha 1D subunit protein-coding 13-PTNLD9-TUMOR_peak_31307 chr20 46680740 46681082 + 11.32141 NA Intergenic Intergenic -62050 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 13-PTNLD9-TUMOR_peak_13749 chr12 108982851 108982988 + 11.32141 NA TTS (NM_181724) TTS (NM_181724) 8975 NM_181724 338773 Hs.449718 NM_181724 HPRD:11260 TMEM119 OBIF transmembrane protein 119 protein-coding 13-PTNLD9-TUMOR_peak_52153 chr8 134125117 134125304 + 11.32141 NA intron (NM_003235, intron 43 of 47) intron (NM_003235, intron 43 of 47) -9900 NM_001282964 6503 Hs.75367 NM_006748 HPRD:03060 SLA SLA1|SLAP Src-like-adaptor protein-coding 13-PTNLD9-TUMOR_peak_20797 chr17 28246479 28246675 + 11.32141 NA intron (NM_001282129, intron 1 of 15) intron (NM_001282129, intron 1 of 15) -10297 NM_001145053 374786 Hs.662411 NM_198529 HPRD:13528 EFCAB5 - EF-hand calcium binding domain 5 protein-coding 13-PTNLD9-TUMOR_peak_12417 chr12 29896889 29897032 + 11.32141 NA intron (NM_175861, intron 5 of 17) intron (NM_175861, intron 5 of 17) 39783 NM_001193451 83857 Hs.401954 NM_175861 HPRD:12472 TMTC1 OLF|TMTC1A transmembrane and tetratricopeptide repeat containing 1 protein-coding 13-PTNLD9-TUMOR_peak_33061 chr22 29613298 29613525 + 11.32141 NA intron (NM_001267895, intron 3 of 14) MIR3|SINE|MIR 11510 NM_001267895 129080 Hs.289106 NM_133455 HPRD:09936 EMID1 EMI5|EMU1 EMI domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_16182 chr14 70512824 70512964 + 11.32141 NA exon (NM_182932, exon 7 of 7) exon (NM_182932, exon 7 of 7) 34040 NM_182936 6547 Hs.337696 NM_033262 HPRD:09723 SLC8A3 NCX3 solute carrier family 8 (sodium/calcium exchanger), member 3 protein-coding 13-PTNLD9-TUMOR_peak_39816 chr4 166893176 166893372 + 11.32141 NA intron (NM_012464, intron 1 of 20) ERV3-16A3_I-int|LTR|ERVL 98864 NM_012464 7092 Hs.106513 NM_012464 HPRD:07074 TLL1 ASD6|TLL tolloid-like 1 protein-coding 13-PTNLD9-TUMOR_peak_43096 chr5 173586619 173586826 + 11.32141 NA Intergenic Intergenic 114115 NM_015980 51617 Hs.559412 NM_015980 HPRD:13664 HMP19 - HMP19 protein protein-coding 13-PTNLD9-TUMOR_peak_46089 chr6 134684457 134684738 + 11.32141 NA Intergenic Intergenic -45401 NM_001143676 6446 Hs.510078 NM_005627 HPRD:04264 SGK1 SGK serum/glucocorticoid regulated kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_9224 chr11 18007145 18007283 + 11.32141 NA intron (NR_104040, intron 8 of 11) intron (NR_104040, intron 8 of 11) 27495 NM_012139 26297 Hs.32470 NM_012139 HPRD:06926 SERGEF DELGEF|Gnefr secretion regulating guanine nucleotide exchange factor protein-coding 13-PTNLD9-TUMOR_peak_30066 chr2 235166924 235167045 + 11.32141 NA Intergenic Intergenic 207638 NM_006944 6694 Hs.444488 NM_006944 HPRD:04029 SPP2 SPP-24|SPP24 secreted phosphoprotein 2, 24kDa protein-coding 13-PTNLD9-TUMOR_peak_53830 chr9 87562293 87562587 + 11.32141 NA intron (NM_001018064, intron 13 of 16) L2c|LINE|L2 277148 NM_001018064 4915 Hs.494312 NM_006180 HPRD:02712 NTRK2 GP145-TrkB|TRKB|trk-B neurotrophic tyrosine kinase, receptor, type 2 protein-coding 13-PTNLD9-TUMOR_peak_37185 chr3 189627519 189627689 + 11.32141 NA Intergenic MIR|SINE|MIR 79893 NR_030642 100126340 NR_030642 MIR944 MIRN944|hsa-mir-944 microRNA 944 ncRNA 13-PTNLD9-TUMOR_peak_5577 chr1 224447823 224447981 + 11.32141 NA intron (NM_001243147, intron 17 of 21) intron (NM_001243147, intron 17 of 21) -3059 NR_031574 100313769 NR_031574 MIR320B2 MIR320B-2|MIRN320B2 microRNA 320b-2 ncRNA 13-PTNLD9-TUMOR_peak_22417 chr18 1002735 1002897 + 11.32141 NA Intergenic Intergenic 97619 NM_001117 116 Hs.531719 NM_001117 HPRD:02369 ADCYAP1 PACAP adenylate cyclase activating polypeptide 1 (pituitary) protein-coding 13-PTNLD9-TUMOR_peak_47701 chr7 63505729 63506001 + 11.32141 NA promoter-TSS (NM_001159522) promoter-TSS (NM_001159522) 44 NM_001159522 442319 Hs.640774 NM_001159522 ENSG00000257482 ZNF727P ZNF727 zinc finger protein 727, pseudogene protein-coding 13-PTNLD9-TUMOR_peak_56993 chrY 26416920 26417061 + 11.32141 NA Intergenic Intergenic -56012 NR_001555 84559 Hs.531603 NR_001555 ENSG00000172332 GOLGA2P2Y GOLGA2LY|GOLGA2LY1|GOLGA2P2 golgin A2 pseudogene 2, Y-linked pseudo 13-PTNLD9-TUMOR_peak_9336 chr11 25087348 25087518 + 11.32141 NA intron (NM_001009909, intron 10 of 11) intron (NM_001009909, intron 10 of 11) 568917 NM_001252008 338645 Hs.144138 NM_001009909 HPRD:17348 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 13-PTNLD9-TUMOR_peak_13464 chr12 90484761 90485240 + 11.32141 NA Intergenic Intergenic 382268 NR_028138 338758 Hs.601766 NR_028138 ENSG00000271614 LINC00936 - long intergenic non-protein coding RNA 936 ncRNA 13-PTNLD9-TUMOR_peak_51792 chr8 123501946 123502193 + 11.32141 NA Intergenic Intergenic -291832 NM_014943 22882 Hs.377090 NM_014943 HPRD:16458 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 13-PTNLD9-TUMOR_peak_14564 chr13 33403999 33404291 + 11.32141 NA intron (NR_047020, intron 4 of 4) intron (NR_047020, intron 4 of 4) 81645 NR_047020 100874167 Hs.406290 NR_047020 LINC00423 - long intergenic non-protein coding RNA 423 ncRNA 13-PTNLD9-TUMOR_peak_54594 chr9 119395336 119395588 + 11.32141 NA intron (NM_198187, intron 2 of 8) intron (NM_198187, intron 2 of 8) 54032 NM_198186 23245 Hs.601562 NM_014010 HPRD:12498 ASTN2 bA67K19.1 astrotactin 2 protein-coding 13-PTNLD9-TUMOR_peak_40729 chr5 42858893 42859058 + 11.32141 NA Intergenic Intergenic -46951 NM_001085486 6414 Hs.275775 NM_005410 HPRD:03286 SEPP1 SELP|SeP selenoprotein P, plasma, 1 protein-coding 13-PTNLD9-TUMOR_peak_21277 chr17 44704933 44705043 + 11.32141 NA intron (NR_040116, intron 3 of 19) intron (NR_040116, intron 3 of 19) 36888 NR_033799 728806 Hs.735097 NR_033799 NSFP1 NSFP N-ethylmaleimide-sensitive factor pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_41475 chr5 87733909 87734035 + 11.32141 NA intron (NR_105021, intron 1 of 5) intron (NR_105021, intron 1 of 5) 935 NR_105021 102546226 Hs.535810 NR_105021 LOC102546226 - uncharacterized LOC102546226 ncRNA 13-PTNLD9-TUMOR_peak_21149 chr17 42092353 42092491 + 11.32141 NA promoter-TSS (NM_032376) promoter-TSS (NM_032376) -77 NM_032376 84336 Hs.514211 NM_032376 HPRD:14623 TMEM101 - transmembrane protein 101 protein-coding 13-PTNLD9-TUMOR_peak_19301 chr16 49967028 49967156 + 11.32141 NA Intergenic Intergenic -75262 NM_001271620 23090 Hs.530930 NM_015069 HPRD:05189 ZNF423 Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104 zinc finger protein 423 protein-coding 13-PTNLD9-TUMOR_peak_55579 chrX 16178915 16179230 + 11.32141 NA Intergenic Intergenic -6532 NM_001277307 645864 Hs.632792 NM_001277307 ENSG00000182798 MAGEB17 - melanoma antigen family B, 17 protein-coding 13-PTNLD9-TUMOR_peak_56436 chrX 122898873 122899061 + 11.32141 NA Intergenic Intergenic -32063 NM_001081550 57187 Hs.149991 NM_020449 HPRD:02317 THOC2 CXorf3|THO2|dJ506G2.1|hTREX120 THO complex 2 protein-coding 13-PTNLD9-TUMOR_peak_43680 chr6 7496607 7496773 + 11.32141 NA Intergenic Intergenic -45180 NM_001008844 1832 Hs.519873 NM_004415 HPRD:00513 DSP DP|DPI|DPII desmoplakin protein-coding 13-PTNLD9-TUMOR_peak_5304 chr1 207180762 207180955 + 11.32141 NA Intergenic Intergenic 25243 NM_023938 79098 Hs.32417 NM_023938 HPRD:15294 C1orf116 SARG chromosome 1 open reading frame 116 protein-coding 13-PTNLD9-TUMOR_peak_45990 chr6 122792789 122793109 + 11.32141 NA promoter-TSS (NM_020755) promoter-TSS (NM_020755) 3 NM_020755 57515 Hs.146668 NM_020755 HPRD:15480 SERINC1 TDE1L|TDE2|TMS-2|TMS2 serine incorporator 1 protein-coding 13-PTNLD9-TUMOR_peak_21513 chr17 50104590 50104698 + 11.32141 NA intron (NM_001082533, intron 3 of 9) MER1A|DNA|hAT-Charlie 131488 NM_020178 56934 Hs.463466 NM_020178 HPRD:05224 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase X protein-coding 13-PTNLD9-TUMOR_peak_6561 chr10 15514869 15515073 + 11.32141 NA Intergenic Intergenic -101913 NM_001010924 221061 Hs.66762 NM_001010924 HPRD:18581 FAM171A1 C10orf38 family with sequence similarity 171, member A1 protein-coding 13-PTNLD9-TUMOR_peak_48893 chr7 121068994 121069154 + 11.32141 NA Intergenic AluJr4|SINE|Alu -32652 NM_001040020 10447 Hs.434053 NM_014888 HPRD:12270 FAM3C ILEI family with sequence similarity 3, member C protein-coding 13-PTNLD9-TUMOR_peak_5388 chr1 215287574 215287708 + 11.32141 NA intron (NM_001017424, intron 2 of 6) intron (NM_001017424, intron 2 of 6) 31081 NM_014217 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium channel, subfamily K, member 2 protein-coding 13-PTNLD9-TUMOR_peak_45984 chr6 121842074 121842285 + 11.32141 NA Intergenic Intergenic 85456 NM_000165 2697 Hs.74471 NM_000165 HPRD:00414 GJA1 AVSD3|CMDR|CX43|GJAL|HLHS1|HSS|ODDD gap junction protein, alpha 1, 43kDa protein-coding 13-PTNLD9-TUMOR_peak_57000 chrY 27545384 27545522 + 11.32141 NA Intergenic Intergenic -56005 NR_001555 84559 Hs.531603 NR_001555 ENSG00000172332 GOLGA2P2Y GOLGA2LY|GOLGA2LY1|GOLGA2P2 golgin A2 pseudogene 2, Y-linked pseudo 13-PTNLD9-TUMOR_peak_26932 chr2 53733066 53733256 + 11.32141 NA Intergenic LTR32|LTR|ERVL -261768 NM_001008708 494143 Hs.585944 NM_001008708 HPRD:17418 CHAC2 - ChaC, cation transport regulator homolog 2 (E. coli) protein-coding 13-PTNLD9-TUMOR_peak_50478 chr8 28527294 28527434 + 11.32141 NA Intergenic Intergenic -31626 NR_073469 2137 Hs.491354 NM_001440 HPRD:09306 EXTL3 BOTV|EXTL1L|EXTR1|REGR|RPR exostosin-like glycosyltransferase 3 protein-coding 13-PTNLD9-TUMOR_peak_54775 chr9 128275911 128276100 + 11.32141 NA intron (NM_001006620, intron 6 of 10) intron (NM_001006620, intron 6 of 10) 193508 NM_001006619 79109 Hs.495138 NM_024117 HPRD:17464 MAPKAP1 JC310|MIP1|SIN1|SIN1b|SIN1g mitogen-activated protein kinase associated protein 1 protein-coding 13-PTNLD9-TUMOR_peak_35061 chr3 83983761 83984158 + 11.32141 NA Intergenic MER61E|LTR|ERV1 934767 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 13-PTNLD9-TUMOR_peak_41029 chr5 61564077 61564315 + 11.32141 NA Intergenic Intergenic -37793 NM_001243953 3796 Hs.558351 NM_004520 KIF2A CDCBM3|HK2|KIF2 kinesin heavy chain member 2A protein-coding 13-PTNLD9-TUMOR_peak_18021 chr15 94218692 94218821 + 11.32141 NA Intergenic L1PA2|LINE|L1 -181033 NR_120321 101927153 Hs.371900 NR_120321 ENSG00000258476 LOC101927153 - uncharacterized LOC101927153 ncRNA 13-PTNLD9-TUMOR_peak_30489 chr20 16816432 16816602 + 11.32141 NA Intergenic L1PB1|LINE|L1 87519 NM_020157 56914 Hs.41119 NM_020157 HPRD:07300 OTOR FDP|MIAL1 otoraplin protein-coding 13-PTNLD9-TUMOR_peak_21687 chr17 58894657 58894839 + 11.32141 NA intron (NM_017679, intron 7 of 23) intron (NM_017679, intron 7 of 23) 139576 NM_001099432 54828 Hs.655028 NM_017679 HPRD:06313 BCAS3 GAOB1|MAAB breast carcinoma amplified sequence 3 protein-coding 13-PTNLD9-TUMOR_peak_38900 chr4 93155638 93155776 + 11.32141 NA Intergenic L1ME5|LINE|L1 -69843 NM_001286838 2895 Hs.162727 NM_001510 HPRD:06781 GRID2 GluD2 glutamate receptor, ionotropic, delta 2 protein-coding 13-PTNLD9-TUMOR_peak_39442 chr4 140746805 140746995 + 11.32141 NA intron (NM_018717, intron 3 of 5) intron (NM_018717, intron 3 of 5) 159978 NM_002413 4258 Hs.81874 NM_002413 HPRD:03436 MGST2 GST2|MGST-II microsomal glutathione S-transferase 2 protein-coding 13-PTNLD9-TUMOR_peak_40513 chr5 31066779 31067085 + 11.32141 NA Intergenic Intergenic -126830 NM_004932 1004 Hs.124776 NM_004932 HPRD:04305 CDH6 CAD6|KCAD cadherin 6, type 2, K-cadherin (fetal kidney) protein-coding 13-PTNLD9-TUMOR_peak_30118 chr2 238480711 238480840 + 11.32141 NA Intergenic Intergenic 5558 NM_015893 51052 Hs.247710 NM_015893 HPRD:04046 PRLH PRH|PRRP prolactin releasing hormone protein-coding 13-PTNLD9-TUMOR_peak_5835 chr1 232372954 232373083 + 11.32141 NA Intergenic Intergenic 278225 NM_020808 57568 Hs.745009 NM_020808 HPRD:15346 SIPA1L2 SPAL2 signal-induced proliferation-associated 1 like 2 protein-coding 13-PTNLD9-TUMOR_peak_46039 chr6 127687475 127687779 + 11.32141 NA Intergenic Intergenic -22873 NM_001105545 55862 Hs.486410 NM_018479 HPRD:13260 ECHDC1 HEL-S-76|MMCD|dJ351K20.2 enoyl CoA hydratase domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_39702 chr4 155006124 155006245 + 11.32141 NA Intergenic MIRc|SINE|MIR -295956 NM_003013 6423 Hs.481022 NM_003013 HPRD:16041 SFRP2 FRP-2|SARP1|SDF-5 secreted frizzled-related protein 2 protein-coding 13-PTNLD9-TUMOR_peak_22965 chr18 35881723 35881823 + 11.32141 NA Intergenic Kanga1d|DNA|TcMar-Tc2 644675 NR_036202 100422857 NR_036202 miRBase:MI0015847 MIR4318 - microRNA 4318 ncRNA 13-PTNLD9-TUMOR_peak_37717 chr4 4432339 4432562 + 11.32141 NA intron (NM_016930, intron 7 of 10) intron (NM_016930, intron 7 of 10) 43760 NM_014392 27065 Hs.518595 NM_014392 HPRD:09624 NSG1 D4S234|D4S234E|NEEP21|P21 neuron specific gene family member 1 protein-coding 13-PTNLD9-TUMOR_peak_11884 chr12 4671260 4671424 + 11.32141 NA Intergenic CpG 23392 NM_001130862 10635 Hs.730696 NM_006479 ENSG00000111247 RAD51AP1 PIR51 RAD51 associated protein 1 protein-coding 13-PTNLD9-TUMOR_peak_46415 chr6 158563945 158564126 + 11.32141 NA intron (NM_032861, intron 8 of 16) L2b|LINE|L2 25277 NM_032861 84947 Hs.154706 NM_032861 HPRD:10223 SERAC1 - serine active site containing 1 protein-coding 13-PTNLD9-TUMOR_peak_13443 chr12 88214679 88214890 + 11.32141 NA Intergenic Intergenic -36296 NR_033410 400058 Hs.572212 NR_033410 MKRN9P MKRN5|MKRN9|MKRNP6|RNF65|ZNF127L3 makorin ring finger protein 9, pseudogene pseudo 13-PTNLD9-TUMOR_peak_2046 chr1 64100228 64100485 + 11.32141 NA intron (NM_002633, intron 4 of 10) intron (NM_002633, intron 4 of 10) 11469 NM_001172818 5236 Hs.1869 NM_002633 HPRD:01389 PGM1 CDG1T|GSD14 phosphoglucomutase 1 protein-coding 13-PTNLD9-TUMOR_peak_50501 chr8 29399827 29399952 + 11.32141 NA Intergenic MER11D|LTR|ERVK -191622 NM_001394 1846 Hs.417962 NM_001394 HPRD:04123 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 13-PTNLD9-TUMOR_peak_17583 chr15 71341297 71341539 + 11.32141 NA intron (NM_001199017, intron 15 of 15) intron (NM_001199017, intron 15 of 15) 66421 NM_001102658 196993 Hs.646533 NM_001102658 ENSG00000225362 CT62 - cancer/testis antigen 62 protein-coding 13-PTNLD9-TUMOR_peak_20092 chr16 88821651 88822107 + 11.31616 NA intron (NM_001142864, intron 1 of 50) LTR47B|LTR|ERVL 12704 NR_120387 339059 Hs.449817 NR_120387 HPRD:08282 LOC339059 - uncharacterized LOC339059 ncRNA 13-PTNLD9-TUMOR_peak_98 chr1 1632113 1632496 + 11.31616 NA intron (NR_002946, intron 2 of 5).2 CpG-130 926 NR_002946 8511 Hs.671760 NR_002946 HPRD:04502 MMP23A MIFR|MIFR-1|MMP21 matrix metallopeptidase 23A (pseudogene) pseudo 13-PTNLD9-TUMOR_peak_54722 chr9 125675463 125675701 + 11.30903 NA promoter-TSS (NM_006626) promoter-TSS (NM_006626) 25 NM_006626 10773 Hs.654596 NM_006626 HPRD:09341 ZBTB6 ZID|ZNF482 zinc finger and BTB domain containing 6 protein-coding 13-PTNLD9-TUMOR_peak_1952 chr1 59349047 59349303 + 11.30903 NA intron (NR_108106, intron 1 of 1) L3|LINE|CR1 98352 NR_034015 100131060 Hs.680604 NR_034014 ENSG00000234807 LINC01135 - long intergenic non-protein coding RNA 1135 ncRNA 13-PTNLD9-TUMOR_peak_27854 chr2 101944370 101944628 + 11.30903 NA Intergenic Intergenic 18587 NR_049881 100847007 NR_049881 miRBase:MI0019303 MIR5696 - microRNA 5696 ncRNA 13-PTNLD9-TUMOR_peak_26703 chr2 43214495 43214625 + 11.30903 NA Intergenic AluSp|SINE|Alu 52122 NR_110585 102723854 Hs.570165 NR_110585 LOC102723854 - uncharacterized LOC102723854 ncRNA 13-PTNLD9-TUMOR_peak_12440 chr12 31556156 31556290 + 11.30903 NA intron (NM_144973, intron 14 of 20) intron (NM_144973, intron 14 of 20) -77064 NM_001135812 58516 Hs.505154 NM_021238 HPRD:16588 FAM60A C12orf14|TERA family with sequence similarity 60, member A protein-coding 13-PTNLD9-TUMOR_peak_50947 chr8 54866627 54866758 + 11.30903 NA exon (NM_170587, exon 5 of 6) exon (NM_170587, exon 5 of 6) 68324 NM_201437 6917 Hs.491745 NM_006756 HPRD:03252 TCEA1 GTF2S|SII|TCEA|TF2S|TFIIS transcription elongation factor A (SII), 1 protein-coding 13-PTNLD9-TUMOR_peak_53035 chr9 33350369 33350583 + 11.30903 NA intron (NM_002504, intron 15 of 23) intron (NM_002504, intron 15 of 23) 52041 NM_001170 364 Hs.455323 NM_001170 HPRD:04277 AQP7 AQP7L|AQP9|AQPap|GLYCQTL aquaporin 7 protein-coding 13-PTNLD9-TUMOR_peak_40604 chr5 35877132 35877358 + 11.30903 NA non-coding (NR_120485, exon 6 of 6) non-coding (NR_120485, exon 6 of 6) 20268 NR_120485 3575 Hs.591742 NM_002185 HPRD:00893 IL7R CD127|CDW127|IL-7R-alpha|IL7RA|ILRA interleukin 7 receptor protein-coding 13-PTNLD9-TUMOR_peak_20199 chr17 618005 618224 + 11.30903 NA promoter-TSS (NM_001128159) promoter-TSS (NM_001128159) -18 NM_018289 55275 Hs.461819 NM_018289 HPRD:07720 VPS53 HCCS1|PCH2E|hVps53L|pp13624 vacuolar protein sorting 53 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_52131 chr8 133288760 133288986 + 11.30903 NA intron (NM_004519, intron 1 of 14) L3|LINE|CR1 170636 NM_001204824 3786 Hs.374023 NM_004519 HPRD:09077 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel, KQT-like subfamily, member 3 protein-coding 13-PTNLD9-TUMOR_peak_49492 chr7 143132490 143132636 + 11.30628 NA intron (NR_033897, intron 2 of 4) intron (NR_033897, intron 2 of 4) -7983 NM_177437 338398 Hs.688222 NM_177437 HPRD:18159 TAS2R60 T2R56|T2R60 taste receptor, type 2, member 60 protein-coding 13-PTNLD9-TUMOR_peak_29448 chr2 197158966 197159153 + 11.30628 NA intron (NM_020760, intron 13 of 28) intron (NM_020760, intron 13 of 28) 34311 NR_110226 101927482 Hs.191841 NR_110225 ENSG00000229056 LOC101927482 - uncharacterized LOC101927482 ncRNA 13-PTNLD9-TUMOR_peak_11724 chr11 133894399 133894604 + 11.30628 NA Intergenic Intergenic -7666 NR_027276 100128239 Hs.423734 NR_027276 ENSG00000204241 LOC100128239 - uncharacterized LOC100128239 ncRNA 13-PTNLD9-TUMOR_peak_4590 chr1 179846917 179847058 + 11.30165 NA promoter-TSS (NM_001199260) promoter-TSS (NM_001199260) -46 NM_145034 163590 Hs.571797 NM_022347 HPRD:10048 TOR1AIP2 IFRG15|LULL1|NET9 torsin A interacting protein 2 protein-coding 13-PTNLD9-TUMOR_peak_24332 chr19 17577055 17577263 + 11.29998 NA Intergenic LTR13|LTR|ERVK -4141 NM_198580 376497 Hs.363138 NM_198580 HPRD:11863 SLC27A1 ACSVL5|FATP|FATP1 solute carrier family 27 (fatty acid transporter), member 1 protein-coding 13-PTNLD9-TUMOR_peak_12555 chr12 38786439 38786629 + 11.29762 NA Intergenic Intergenic 75977 NM_001013620 144245 Hs.259305 NM_001013620 ALG10B ALG10|KCR1 ALG10B, alpha-1,2-glucosyltransferase protein-coding 13-PTNLD9-TUMOR_peak_20366 chr17 6734997 6735193 + 11.29762 NA promoter-TSS (NM_053285) promoter-TSS (NM_053285) -35 NM_053285 83659 Hs.462108 NM_053285 TEKT1 - tektin 1 protein-coding 13-PTNLD9-TUMOR_peak_51112 chr8 69983835 69983969 + 11.29762 NA intron (NR_039986, intron 1 of 4) intron (NR_039986, intron 1 of 4) 32523 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LOC100505718 - uncharacterized LOC100505718 ncRNA 13-PTNLD9-TUMOR_peak_41397 chr5 79270823 79270983 + 11.29762 NA Intergenic Intergenic 16185 NM_001167741 345778 Hs.531418 NM_001010891 MTX3 - metaxin 3 protein-coding 13-PTNLD9-TUMOR_peak_16084 chr14 68400850 68400986 + 11.29762 NA intron (NM_133510, intron 7 of 10) intron (NM_133510, intron 7 of 10) 114422 NM_133510 5890 Hs.172587 NM_002877 HPRD:04255 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 13-PTNLD9-TUMOR_peak_22851 chr18 28547789 28547930 + 11.29762 NA Intergenic Intergenic 74922 NM_001941 1825 Hs.41690 NM_001941 HPRD:02604 DSC3 CDHF3|DSC|DSC1|DSC2|DSC4|HT-CP desmocollin 3 protein-coding 13-PTNLD9-TUMOR_peak_44038 chr6 19734345 19734674 + 11.29762 NA Intergenic Intergenic -103092 NM_001546 3400 Hs.519601 NM_001546 ID4 IDB4|bHLHb27 inhibitor of DNA binding 4, dominant negative helix-loop-helix protein protein-coding 13-PTNLD9-TUMOR_peak_42384 chr5 141126837 141126988 + 11.29762 NA Intergenic Intergenic -65112 NM_022481 64411 Hs.726187 NM_022481 HPRD:09441 ARAP3 CENTD3|DRAG1 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3 protein-coding 13-PTNLD9-TUMOR_peak_17066 chr15 40361413 40361652 + 11.29762 NA Intergenic Intergenic 30020 NR_040059 100131089 Hs.386000 NR_040059 ENSG00000248508 SRP14-AS1 - SRP14 antisense RNA1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_45811 chr6 104937360 104937489 + 11.29762 NA Intergenic L1PA2|LINE|L1 370370 NR_104424 57531 Hs.434340 NM_020771 HPRD:17086 HACE1 - HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 13-PTNLD9-TUMOR_peak_51897 chr8 126322059 126322211 + 11.29762 NA intron (NM_173685, intron 5 of 7) intron (NM_173685, intron 5 of 7) -120428 NM_025195 10221 Hs.444947 NM_025195 HPRD:09863 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 13-PTNLD9-TUMOR_peak_50689 chr8 40755304 40755441 + 11.29762 NA promoter-TSS (NM_024645) promoter-TSS (NM_024645) -29 NM_001135731 79698 Hs.591850 NM_024645 HPRD:07837 ZMAT4 - zinc finger, matrin-type 4 protein-coding 13-PTNLD9-TUMOR_peak_26004 chr2 7913505 7913775 + 11.29762 NA Intergenic Intergenic 126146 NR_110256 101929551 Hs.116006 NR_110256 LOC101929551 - uncharacterized LOC101929551 ncRNA 13-PTNLD9-TUMOR_peak_21605 chr17 56138023 56138162 + 11.29762 NA Intergenic Intergenic 22473 NR_110809 101927666 Hs.552237 NR_110809 ENSG00000266290 LOC101927666 - uncharacterized LOC101927666 ncRNA 13-PTNLD9-TUMOR_peak_24684 chr19 33589277 33589406 + 11.29762 NA intron (NM_018025, intron 8 of 19) intron (NM_018025, intron 8 of 19) 17555 NM_018025 55094 Hs.466436 NM_018025 HPRD:11008 GPATCH1 ECGP|GPATC1 G patch domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_12306 chr12 22596459 22596583 + 11.29727 NA Intergenic MamGypLTR3|LTR|Gypsy 100959 NM_001286175 9847 Hs.271014 NM_014802 HPRD:11087 C2CD5 CDP138|KIAA0528 C2 calcium-dependent domain containing 5 protein-coding 13-PTNLD9-TUMOR_peak_53709 chr9 80084918 80085138 + 11.29727 NA intron (NR_121184, intron 2 of 4) intron (NR_121184, intron 2 of 4) 22463 NR_121184 101927422 Hs.434324 NR_121184 ENSG00000231373 GNA14-AS1 - GNA14 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_32532 chr21 45643397 45643518 + 11.29727 NA intron (NM_001283050, intron 6 of 6) intron (NM_001283050, intron 6 of 6) 17430 NM_001283050 23308 Hs.14155 NM_015259 HPRD:05757 ICOSLG B7-H2|B7H2|B7RP-1|B7RP1|CD275|GL50|ICOS-L|ICOSL|LICOS inducible T-cell co-stimulator ligand protein-coding 13-PTNLD9-TUMOR_peak_11471 chr11 122727415 122727649 + 11.29727 NA intron (NM_019604, intron 5 of 9) intron (NM_019604, intron 5 of 9) 18277 NM_019604 56253 Hs.159523 NM_019604 HPRD:16760 CRTAM CD355 cytotoxic and regulatory T cell molecule protein-coding 13-PTNLD9-TUMOR_peak_32402 chr21 43170802 43170942 + 11.29727 NA intron (NM_020639, intron 3 of 7) AluJb|SINE|Alu -3871 NR_106872 102465488 NR_106872 MIR6814 hsa-mir-6814 microRNA 6814 ncRNA 13-PTNLD9-TUMOR_peak_8058 chr10 97028360 97028597 + 11.29727 NA intron (NM_020992, intron 3 of 6) intron (NM_020992, intron 3 of 6) 22427 NM_020992 9124 Hs.368525 NM_020992 HPRD:09326 PDLIM1 CLIM1|CLP-36|CLP36|HEL-S-112|hCLIM1 PDZ and LIM domain 1 protein-coding 13-PTNLD9-TUMOR_peak_37171 chr3 189071453 189071637 + 11.29727 NA Intergenic Intergenic -113162 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_48351 chr7 94641369 94641515 + 11.29727 NA intron (NM_017650, intron 2 of 15) MSTA|LTR|ERVL-MaLR 102232 NM_001166161 55607 Hs.21816 NM_017650 ENSG00000158528 PPP1R9A NRB1|NRBI|Neurabin-I protein phosphatase 1, regulatory subunit 9A protein-coding 13-PTNLD9-TUMOR_peak_9284 chr11 19775003 19775512 + 11.29727 NA intron (NM_182964, intron 1 of 37) intron (NM_182964, intron 1 of 37) 6372 NR_039843 100616426 NR_039843 miRBase:MI0017327 MIR4694 - microRNA 4694 ncRNA 13-PTNLD9-TUMOR_peak_32255 chr21 37502603 37502724 + 11.29727 NA Intergenic CpG -3725 NR_040084 100133286 Hs.728809 NR_040084 ENSG00000230212 LOC100133286 - uncharacterized LOC100133286 ncRNA 13-PTNLD9-TUMOR_peak_34946 chr3 71979565 71979807 + 11.29727 NA Intergenic L2c|LINE|L2 -145329 NM_021935 60675 Hs.528665 NM_021935 HPRD:08446 PROK2 BV8|HH4|KAL4|MIT1|PK2 prokineticin 2 protein-coding 13-PTNLD9-TUMOR_peak_45023 chr6 42134284 42134789 + 11.29727 NA intron (NM_000409, intron 2 of 5) intron (NM_000409, intron 2 of 5) 11392 NM_000409 2978 Hs.92858 NM_000409 HPRD:02648 GUCA1A C6orf131|COD3|CORD14|GCAP|GCAP1|GUCA|GUCA1|dJ139D8.6 guanylate cyclase activator 1A (retina) protein-coding 13-PTNLD9-TUMOR_peak_12201 chr12 13326601 13326778 + 11.29186 NA Intergenic Intergenic -22913 NM_001423 2012 Hs.719042 NM_001423 HPRD:11892 EMP1 CL-20|EMP-1|TMP epithelial membrane protein 1 protein-coding 13-PTNLD9-TUMOR_peak_44721 chr6 34027156 34027315 + 11.29186 NA intron (NM_001256809, intron 3 of 8) intron (NM_001256809, intron 3 of 8) 46524 NM_001256813 2914 Hs.429018 NM_000841 HPRD:04978 GRM4 GPRC1D|MGLUR4|mGlu4 glutamate receptor, metabotropic 4 protein-coding 13-PTNLD9-TUMOR_peak_37183 chr3 189559384 189559607 + 11.29186 NA intron (NM_003722, intron 4 of 13) intron (NM_003722, intron 4 of 13) 11784 NR_030642 100126340 NR_030642 MIR944 MIRN944|hsa-mir-944 microRNA 944 ncRNA 13-PTNLD9-TUMOR_peak_25456 chr19 50979597 50980154 + 11.29186 NA exon (NM_175063, exon 1 of 8) exon (NM_175063, exon 1 of 8) 128 NM_138411 112703 Hs.448941 NM_138411 HPRD:18718 FAM71E1 - family with sequence similarity 71, member E1 protein-coding 13-PTNLD9-TUMOR_peak_18317 chr16 3313640 3313880 + 11.29186 NA promoter-TSS (NR_033904) promoter-TSS (NR_033904) -8 NR_033904 283876 Hs.592092 NR_033904 ENSG00000006194 LINC00921 - long intergenic non-protein coding RNA 921 ncRNA 13-PTNLD9-TUMOR_peak_37205 chr3 190040153 190040343 + 11.28603 NA promoter-TSS (NM_021101) promoter-TSS (NM_021101) -13 NM_021101 9076 Hs.439060 NM_021101 HPRD:04760 CLDN1 CLD1|ILVASC|SEMP1 claudin 1 protein-coding 13-PTNLD9-TUMOR_peak_20310 chr17 4613002 4613205 + 11.28603 NA promoter-TSS (NM_199004) promoter-TSS (NM_199004) -686 NM_004313 409 Hs.435811 NM_004313 HPRD:00147 ARRB2 ARB2|ARR2|BARR2 arrestin, beta 2 protein-coding 13-PTNLD9-TUMOR_peak_24047 chr19 12404664 12404882 + 11.28603 NA intron (NM_001164276, intron 1 of 4) LTR26E|LTR|ERV1 941 NM_001164276 51710 Hs.296731 NM_016264 HPRD:01927 ZNF44 GIOT-2|KOX7|ZNF|ZNF504|ZNF55|ZNF58 zinc finger protein 44 protein-coding 13-PTNLD9-TUMOR_peak_963 chr1 32201252 32201478 + 11.28603 NA intron (NM_001294335, intron 23 of 32) intron (NM_001294335, intron 23 of 32) 22971 NR_036216 100423028 NR_036216 MIR4254 - microRNA 4254 ncRNA 13-PTNLD9-TUMOR_peak_16936 chr15 31507630 31508252 + 11.28603 NA Intergenic CpG 15109 NM_001243538 283710 Hs.591097 NM_001243538 LOC283710 - uncharacterized LOC283710 protein-coding 13-PTNLD9-TUMOR_peak_30815 chr20 32400096 32400255 + 11.27785 NA intron (NM_176812, intron 1 of 4) intron (NM_176812, intron 1 of 4) 1065 NM_176812 128866 Hs.472471 NM_176812 HPRD:16642 CHMP4B C20orf178|CHMP4A|CTPP3|CTRCT31|SNF7|SNF7-2|Shax1|VPS32B|Vps32-2|dJ553F4.4 charged multivesicular body protein 4B protein-coding 13-PTNLD9-TUMOR_peak_5690 chr1 228169150 228169256 + 11.27785 NA Intergenic AluSz|SINE|Alu -25520 NM_033131 89780 Hs.336930 NM_033131 HPRD:05897 WNT3A - wingless-type MMTV integration site family, member 3A protein-coding 13-PTNLD9-TUMOR_peak_5901 chr1 234635497 234635680 + 11.27552 NA Intergenic Eulor6D|DNA?|DNA? -20739 NM_005646 6894 Hs.498115 NM_005646 HPRD:05445 TARBP1 TRM3|TRP-185|TRP185 TAR (HIV-1) RNA binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_5106 chr1 203597860 203598021 + 11.27458 NA intron (NM_001684, intron 1 of 20) intron (NM_001684, intron 1 of 20) 2025 NM_001684 493 Hs.343522 NM_001684 HPRD:00159 ATP2B4 ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x ATPase, Ca++ transporting, plasma membrane 4 protein-coding 13-PTNLD9-TUMOR_peak_33101 chr22 30816517 30816687 + 11.26757 NA intron (NM_012429, intron 11 of 11) intron (NM_012429, intron 11 of 11) -5009 NM_016498 51537 Hs.713636 NM_016498 HPRD:17612 MTFP1 MTP18 mitochondrial fission process 1 protein-coding 13-PTNLD9-TUMOR_peak_36169 chr3 140224155 140224345 + 11.26757 NA TTS (NR_108084) TTS (NR_108084) 3381 NR_108084 101927808 Hs.581236 NR_108084 ENSG00000250433 CLSTN2-AS1 - CLSTN2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_3372 chr1 146895364 146895567 + 11.26757 NA intron (NR_038423, intron 3 of 3) L1PA2|LINE|L1 94234 NR_038423 100289211 Hs.323484 NR_038423 LINC00624 - long intergenic non-protein coding RNA 624 ncRNA 13-PTNLD9-TUMOR_peak_19038 chr16 30960316 30960509 + 11.26757 NA promoter-TSS (NM_152288) promoter-TSS (NM_152288) 7 NM_152288 93129 Hs.745104 NM_152288 HPRD:14431 ORAI3 TMEM142C ORAI calcium release-activated calcium modulator 3 protein-coding 13-PTNLD9-TUMOR_peak_45301 chr6 52705654 52705903 + 11.26396 NA intron (NM_153699, intron 1 of 6) intron (NM_153699, intron 1 of 6) 5115 NM_153699 221357 Hs.646984 NM_153699 HPRD:09620 GSTA5 - glutathione S-transferase alpha 5 protein-coding 13-PTNLD9-TUMOR_peak_17661 chr15 74945867 74946129 + 11.26396 NA intron (NM_001142444, intron 5 of 7) intron (NM_001142444, intron 5 of 7) 38663 NM_001130028 1198 Hs.584748 NM_001292 HPRD:04290 CLK3 PHCLK3|PHCLK3/152 CDC-like kinase 3 protein-coding 13-PTNLD9-TUMOR_peak_19835 chr16 79406485 79406723 + 11.26396 NA Intergenic Intergenic 228018 NM_005360 4094 Hs.134859 NM_005360 HPRD:01518 MAF CCA4|c-MAF v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog protein-coding 13-PTNLD9-TUMOR_peak_11404 chr11 119290962 119291079 + 11.26396 NA exon (NM_006288, exon 3 of 4) exon (NM_006288, exon 3 of 4) 3226 NM_006288 7070 Hs.644697 NM_006288 THY1 CD90 Thy-1 cell surface antigen protein-coding 13-PTNLD9-TUMOR_peak_51552 chr8 107215827 107215988 + 11.26396 NA Intergenic Intergenic -66499 NM_018002 55074 Hs.127286 NM_018002 HPRD:16126 OXR1 TLDC3 oxidation resistance 1 protein-coding 13-PTNLD9-TUMOR_peak_4484 chr1 175483602 175484149 + 11.26396 NA intron (NM_003285, intron 2 of 22) intron (NM_003285, intron 2 of 22) 228877 NM_003285 7143 Hs.659864 NM_003285 HPRD:03589 TNR TN-R tenascin R protein-coding 13-PTNLD9-TUMOR_peak_43103 chr5 173837986 173838095 + 11.26396 NA intron (NR_125806, intron 1 of 5) intron (NR_125806, intron 1 of 5) 74683 NR_125806 101928176 Hs.436014 NR_125806 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 13-PTNLD9-TUMOR_peak_35966 chr3 133166681 133166861 + 11.26396 NA intron (NM_003571, intron 2 of 6) MER5B|DNA|hAT-Charlie 47932 NM_003571 8419 Hs.659862 NM_003571 HPRD:04444 BFSP2 CP47|CP49|CTRCT12|LIFL-L|PHAKOSIN beaded filament structural protein 2, phakinin protein-coding 13-PTNLD9-TUMOR_peak_2988 chr1 116681783 116681952 + 11.26396 NA Intergenic Intergenic 27491 NM_152367 126868 Hs.376194 NM_152367 HPRD:08245 MAB21L3 C1orf161 mab-21-like 3 (C. elegans) protein-coding 13-PTNLD9-TUMOR_peak_20612 chr17 19039467 19039859 + 11.26396 NA intron (NM_001129778, intron 2 of 3) intron (NM_001129778, intron 2 of 3) 8881 NM_001129778 400581 Hs.661470 NM_001129778 GRAPL - GRB2-related adaptor protein-like protein-coding 13-PTNLD9-TUMOR_peak_37911 chr4 8767386 8767531 + 11.25726 NA Intergenic (CTCA)n|Simple_repeat|Simple_repeat 106085 NM_018942 3166 Hs.104134 NM_018942 HPRD:00873 HMX1 H6|NKX5-3 H6 family homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_17082 chr15 40660077 40660480 + 11.25726 NA exon (NM_033510, exon 8 of 8) exon (NM_033510, exon 8 of 8) 9844 NM_033510 85455 Hs.355645 NM_033510 HPRD:06327 DISP2 DISPB|HsT16908 dispatched homolog 2 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_38661 chr4 78558133 78558360 + 11.25726 NA Intergenic LTR18A|LTR|ERVL 125339 NM_006419 10563 Hs.100431 NM_006419 HPRD:05513 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 chemokine (C-X-C motif) ligand 13 protein-coding 13-PTNLD9-TUMOR_peak_27878 chr2 102759126 102759240 + 11.25726 NA promoter-TSS (NM_000877) promoter-TSS (NM_000877) -53 NM_000877 3554 Hs.701982 NM_000877 HPRD:00994 IL1R1 CD121A|D2S1473|IL-1R-alpha|IL1R|IL1RA|P80 interleukin 1 receptor, type I protein-coding 13-PTNLD9-TUMOR_peak_51649 chr8 116981849 116982009 + 11.25726 NA non-coding (NR_046215, exon 10 of 14) non-coding (NR_046215, exon 10 of 14) -300674 NM_014112 7227 Hs.657018 NM_014112 HPRD:05091 TRPS1 GC79|LGCR trichorhinophalangeal syndrome I protein-coding 13-PTNLD9-TUMOR_peak_20336 chr17 5419601 5419787 + 11.25726 NA intron (NM_014922, intron 14 of 15) L3|LINE|CR1 -15375 NM_001162371 728392 Hs.104305 NM_001162371 LOC728392 - uncharacterized LOC728392 protein-coding 13-PTNLD9-TUMOR_peak_13920 chr12 113697491 113697706 + 11.25726 NA intron (NM_001301214, intron 1 of 26) MLT1K|LTR|ERVL-MaLR 15532 NM_001301214 53373 Hs.524763 NM_017901 HPRD:18217 TPCN1 TPC1 two pore segment channel 1 protein-coding 13-PTNLD9-TUMOR_peak_9137 chr11 13354385 13354561 + 11.25726 NA intron (NM_001178, intron 3 of 19) intron (NM_001178, intron 3 of 19) 55199 NM_001297722 406 Hs.65734 NM_001178 HPRD:03973 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator-like protein-coding 13-PTNLD9-TUMOR_peak_8128 chr10 99600050 99600229 + 11.25726 NA intron (NR_108035, intron 1 of 2) intron (NR_108035, intron 1 of 2) 9416 NR_108035 100505561 Hs.351904 NR_108035 LINC00866 - long intergenic non-protein coding RNA 866 ncRNA 13-PTNLD9-TUMOR_peak_16270 chr14 75179746 75179916 + 11.25726 NA promoter-TSS (NM_015962) promoter-TSS (NM_015962) -19 NM_015962 51077 Hs.579828 NM_015962 HPRD:12633 FCF1 Bka|C14orf111|UTP24 FCF1 rRNA-processing protein protein-coding 13-PTNLD9-TUMOR_peak_51717 chr8 119597265 119597533 + 11.25726 NA intron (NR_109794, intron 1 of 4) L1MB3|LINE|L1 -35841 NR_038210 552860 Hs.571527 NR_038210 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_14896 chr13 78096217 78096450 + 11.25726 NA Intergenic Intergenic -13476 NM_144777 8796 Hs.534699 NM_003843 HPRD:09161 SCEL - sciellin protein-coding 13-PTNLD9-TUMOR_peak_170 chr1 3713015 3713217 + 11.25726 NA promoter-TSS (NM_020710) promoter-TSS (NM_020710) -48 NM_020710 57470 Hs.268488 NM_020710 HPRD:13837 LRRC47 - leucine rich repeat containing 47 protein-coding 13-PTNLD9-TUMOR_peak_47031 chr7 22040973 22041157 + 11.25726 NA Intergenic Intergenic -55523 NM_001127370 55536 Hs.744069 NM_018719 HPRD:11481 CDCA7L JPO2|R1|RAM2 cell division cycle associated 7-like protein-coding 13-PTNLD9-TUMOR_peak_51296 chr8 93770613 93770956 + 11.25726 NA intron (NR_046114, intron 1 of 2) intron (NR_046114, intron 1 of 2) 27504 NR_046114 441369 Hs.521683 NR_046114 ENSG00000248858 FLJ46284 - uncharacterized LOC441369 ncRNA 13-PTNLD9-TUMOR_peak_44908 chr6 38941028 38941196 + 11.25726 NA intron (NM_001206927, intron 83 of 92) intron (NM_001206927, intron 83 of 92) -20229 NR_038401 100131047 Hs.670957 NR_038401 LOC100131047 - uncharacterized LOC100131047 ncRNA 13-PTNLD9-TUMOR_peak_14940 chr13 91369749 91370022 + 11.25726 NA Intergenic Intergenic 208966 NR_027039 144776 Hs.434120 NR_027039 ENSG00000231674 LINC00410 - long intergenic non-protein coding RNA 410 ncRNA 13-PTNLD9-TUMOR_peak_14501 chr13 30031578 30031707 + 11.25726 NA intron (NM_001033602, intron 7 of 13) L1ME2|LINE|L1 28865 NM_015233 23281 Hs.22287 NM_015233 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated tumor suppressor candidate 2 protein-coding 13-PTNLD9-TUMOR_peak_41872 chr5 122243051 122243182 + 11.25726 NA intron (NM_014035, intron 1 of 6) intron (NM_014035, intron 1 of 6) 61956 NM_014035 28966 Hs.483200 NM_014035 HPRD:15413 SNX24 PRO1284 sorting nexin 24 protein-coding 13-PTNLD9-TUMOR_peak_9029 chr11 10509819 10510050 + 11.25726 NA intron (NM_001025390, intron 6 of 14) intron (NM_001025390, intron 6 of 14) 19939 NR_039705 100616263 NR_039705 MIR4485 - microRNA 4485 ncRNA 13-PTNLD9-TUMOR_peak_51423 chr8 101912309 101912510 + 11.25562 NA Intergenic Intergenic 50390 NM_001135702 7534 Hs.492407 NM_003406 HPRD:03183 YWHAZ 14-3-3-zeta|HEL-S-3|HEL4|KCIP-1|YWHAD tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta protein-coding 13-PTNLD9-TUMOR_peak_31760 chr20 60925151 60925440 + 11.25562 NA intron (NM_005560, intron 6 of 79) intron (NM_005560, intron 6 of 79) -2771 NR_109922 101928158 Hs.473256 NR_109922 ENSG00000228812 LAMA5-AS1 - LAMA5 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_48625 chr7 101934921 101935133 + 11.25562 NA intron (NM_020979, intron 1 of 6) intron (NM_020979, intron 1 of 6) -1342 NR_036245 100422858 NR_036245 MIR4285 - microRNA 4285 ncRNA 13-PTNLD9-TUMOR_peak_28063 chr2 112125940 112126133 + 11.25505 NA intron (NR_015395, intron 1 of 1) intron (NR_015395, intron 1 of 1) -47368 NR_039634 100616499 NR_039634 miRBase:MI0016775 MIR4435-1 - microRNA 4435-1 ncRNA 13-PTNLD9-TUMOR_peak_56654 chrX 152343369 152343581 + 11.25505 NA Intergenic CpG 5216 NM_032882 84968 Hs.533301 NM_032882 HPRD:06637 PNMA6A MA6|PNMA6|PNMA6C paraneoplastic Ma antigen family member 6A protein-coding 13-PTNLD9-TUMOR_peak_11232 chr11 112397532 112397695 + 11.25505 NA intron (NR_120559, intron 2 of 2) intron (NR_120559, intron 2 of 2) 28912 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LOC387810 - uncharacterized LOC387810 ncRNA 13-PTNLD9-TUMOR_peak_28547 chr2 134877401 134877725 + 11.25505 NA Intergenic CpG -7133 NR_037450 100500878 NR_037450 miRBase:MI0016080 MIR3679 - microRNA 3679 ncRNA 13-PTNLD9-TUMOR_peak_28475 chr2 132431473 132431760 + 11.25505 NA Intergenic CpG 37018 NR_108087 101927994 Hs.635757 NR_108087 ENSG00000224559 LINC01087 - long intergenic non-protein coding RNA 1087 ncRNA 13-PTNLD9-TUMOR_peak_48544 chr7 100434995 100435179 + 11.25505 NA Intergenic CpG -9944 NM_004444 2050 Hs.437008 NM_004444 HPRD:02481 EPHB4 HTK|MYK1|TYRO11 EPH receptor B4 protein-coding 13-PTNLD9-TUMOR_peak_31177 chr20 43966483 43966709 + 11.25402 NA intron (NM_002999, intron 1 of 4) intron (NM_002999, intron 1 of 4) 10468 NM_002999 6385 Hs.632267 NM_002999 HPRD:08366 SDC4 SYND4 syndecan 4 protein-coding 13-PTNLD9-TUMOR_peak_40974 chr5 58186992 58187466 + 11.25307 NA Intergenic Intergenic 108530 NM_001197223 5144 Hs.117545 NM_006203 HPRD:02530 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D, cAMP-specific protein-coding 13-PTNLD9-TUMOR_peak_1410 chr1 42801556 42801847 + 11.25307 NA promoter-TSS (NM_001198852) promoter-TSS (NM_001198852) -153 NM_001198850 22887 Hs.26023 NM_014947 HPRD:13549 FOXJ3 - forkhead box J3 protein-coding 13-PTNLD9-TUMOR_peak_36090 chr3 138100896 138101133 + 11.25307 NA intron (NM_001085049, intron 2 of 5) intron (NM_001085049, intron 2 of 5) 33044 NM_001252090 22808 Hs.527021 NM_012219 HPRD:06662 MRAS M-RAs|R-RAS3|RRAS3 muscle RAS oncogene homolog protein-coding 13-PTNLD9-TUMOR_peak_51309 chr8 94944971 94945150 + 11.25307 NA Intergenic Intergenic 15781 NM_001161781 54704 Hs.22265 NM_018444 HPRD:16185 PDP1 PDH|PDP|PDPC|PPM2C pyruvate dehyrogenase phosphatase catalytic subunit 1 protein-coding 13-PTNLD9-TUMOR_peak_29424 chr2 195937693 195937836 + 11.25307 NA Intergenic L1PA2|LINE|L1 342445 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LOC101927431 - uncharacterized LOC101927431 ncRNA 13-PTNLD9-TUMOR_peak_21794 chr17 63103696 63103844 + 11.25307 NA intron (NR_110801, intron 2 of 2) MSTD|LTR|ERVL-MaLR 6840 NR_110801 100507002 Hs.729924 NR_110801 ENSG00000263470 LOC100507002 - uncharacterized LOC100507002 ncRNA 13-PTNLD9-TUMOR_peak_19583 chr16 67345705 67345979 + 11.25073 NA intron (NM_001100915, intron 2 of 15) intron (NM_001100915, intron 2 of 15) 14819 NM_001100915 146212 Hs.299127 NM_001100915 ENSG00000168676 KCTD19 - potassium channel tetramerization domain containing 19 protein-coding 13-PTNLD9-TUMOR_peak_11065 chr11 102617639 102618168 + 11.25073 NA Intergenic L1PA3|LINE|L1 -22218 NM_002424 4317 Hs.161839 NM_002424 HPRD:00385 MMP8 CLG1|HNC|MMP-8|PMNL-CL matrix metallopeptidase 8 (neutrophil collagenase) protein-coding 13-PTNLD9-TUMOR_peak_55506 chrX 7895377 7895548 + 11.25073 NA promoter-TSS (NM_004650) promoter-TSS (NM_004650) 13 NM_004650 8228 Hs.264 NM_004650 HPRD:02112 PNPLA4 DXS1283E|GS2|iPLA2eta patatin-like phospholipase domain containing 4 protein-coding 13-PTNLD9-TUMOR_peak_35188 chr3 99988698 99988919 + 11.25073 NA intron (NM_001199198, intron 1 of 18) intron (NM_001199198, intron 1 of 18) 9147 NM_001199198 55773 Hs.477003 NM_018309 HPRD:07727 TBC1D23 NS4ATP1 TBC1 domain family, member 23 protein-coding 13-PTNLD9-TUMOR_peak_15913 chr14 59744997 59745167 + 11.25073 NA intron (NM_001270520, intron 2 of 24) MER44D|DNA|TcMar-Tigger 14923 NM_014992 23002 Hs.19156 NM_014992 HPRD:09433 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 13-PTNLD9-TUMOR_peak_50204 chr8 19521220 19521374 + 11.25073 NA intron (NR_024040, intron 1 of 9) intron (NR_024040, intron 1 of 9) 18797 NM_018371 55790 Hs.613729 NM_018371 HPRD:13114 CSGALNACT1 CSGalNAcT-1|ChGn|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_54873 chr9 131674857 131675057 + 11.25073 NA intron (NM_001127245, intron 2 of 2) intron (NM_001127245, intron 2 of 2) -8217 NM_174933 254295 Hs.709447 NM_174933 HPRD:17850 PHYHD1 - phytanoyl-CoA dioxygenase domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_10570 chr11 72868350 72868813 + 11.25073 NA Intergenic Intergenic -15438 NM_014824 9873 Hs.744959 NM_014824 HPRD:13321 FCHSD2 NWK|SH3MD3 FCH and double SH3 domains 2 protein-coding 13-PTNLD9-TUMOR_peak_4381 chr1 171324911 171325110 + 11.25073 NA Intergenic Intergenic 16975 NR_002719 7151 Hs.661092 NR_002719 TOP1P1 - topoisomerase (DNA) I pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_49620 chr7 150118273 150118439 + 11.25073 NA Intergenic Intergenic -12386 NR_034033 285972 Hs.647110 NR_034033 ENSG00000242258 LINC00996 - long intergenic non-protein coding RNA 996 ncRNA 13-PTNLD9-TUMOR_peak_28621 chr2 139880399 139880616 + 11.25073 NA Intergenic MLT1F2|LTR|ERVL-MaLR 225613 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_23798 chr19 7197237 7197479 + 11.25073 NA intron (NM_001079817, intron 2 of 20) CpG 96653 NM_001079817 3643 Hs.465744 NM_000208 HPRD:00975 INSR CD220|HHF5 insulin receptor protein-coding 13-PTNLD9-TUMOR_peak_45351 chr6 53791443 53791585 + 11.24982 NA Intergenic L4|LINE|RTE -72174 NR_046832 100874282 Hs.571169 NR_046832 ENSG00000236996 MLIP-IT1 - MLIP intronic transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_39032 chr4 108745472 108745613 + 11.24982 NA promoter-TSS (NM_001136258) promoter-TSS (NM_001136258) -179 NM_001136258 166929 Hs.595423 NM_152621 HPRD:11323 SGMS2 SMS2 sphingomyelin synthase 2 protein-coding 13-PTNLD9-TUMOR_peak_4261 chr1 165601216 165601364 + 11.24982 NA intron (NM_004528, intron 1 of 5) intron (NM_004528, intron 1 of 5) 1180 NM_004528 4259 Hs.191734 NM_004528 HPRD:05192 MGST3 GST-III microsomal glutathione S-transferase 3 protein-coding 13-PTNLD9-TUMOR_peak_36088 chr3 138067086 138067664 + 11.24855 NA promoter-TSS (NM_001252090) promoter-TSS (NM_001252090) -133 NM_001252093 22808 Hs.527021 NM_012219 HPRD:06662 MRAS M-RAs|R-RAS3|RRAS3 muscle RAS oncogene homolog protein-coding 13-PTNLD9-TUMOR_peak_32890 chr22 22697320 22697536 + 11.23959 NA Intergenic Intergenic 44965 NR_027293 96610 Hs.449601 NM_080926 HPRD:14302 BMS1P20 - BMS1 pseudogene 20 pseudo 13-PTNLD9-TUMOR_peak_654 chr1 23066280 23066440 + 11.23959 NA intron (NM_004442, intron 1 of 15) intron (NM_004442, intron 1 of 15) 20350 NR_039832 100616391 NR_039832 MIR4684 - microRNA 4684 ncRNA 13-PTNLD9-TUMOR_peak_33689 chr3 9594011 9594175 + 11.23959 NA exon (NM_198560, exon 2 of 4) exon (NM_198560, exon 2 of 4) 1393 NM_198560 375323 Hs.56782 NM_198560 LHFPL4 - lipoma HMGIC fusion partner-like 4 protein-coding 13-PTNLD9-TUMOR_peak_11462 chr11 122556966 122557148 + 11.23959 NA intron (NM_032873, intron 1 of 13) intron (NM_032873, intron 1 of 13) 30659 NM_032873 84959 Hs.444075 NM_032873 HPRD:16463 UBASH3B STS-1|STS1|TULA-2|p70 ubiquitin associated and SH3 domain containing B protein-coding 13-PTNLD9-TUMOR_peak_8228 chr10 104455319 104455474 + 11.23959 NA intron (NM_004311, intron 3 of 5) AluSp|SINE|Alu 18794 NM_004311 403 Hs.182215 NM_004311 HPRD:05260 ARL3 ARFL3 ADP-ribosylation factor-like 3 protein-coding 13-PTNLD9-TUMOR_peak_11586 chr11 128026486 128026636 + 11.23959 NA Intergenic Intergenic 365644 NM_005238 2113 Hs.369438 NM_005238 HPRD:01260 ETS1 ETS-1|EWSR2|p54 v-ets avian erythroblastosis virus E26 oncogene homolog 1 protein-coding 13-PTNLD9-TUMOR_peak_17154 chr15 43546029 43546399 + 11.23959 NA intron (NM_201631, intron 4 of 12) intron (NM_201631, intron 4 of 12) 12841 NM_004245 9333 Hs.129719 NM_004245 HPRD:11949 TGM5 TGASE5|TGASEX|TGM6|TGMX|TGX transglutaminase 5 protein-coding 13-PTNLD9-TUMOR_peak_37421 chr3 196006356 196006533 + 11.23959 NA intron (NM_005017, intron 2 of 9) intron (NM_005017, intron 2 of 9) 8140 NM_005017 5130 Hs.135997 NM_005017 HPRD:00438 PCYT1A CCTA|CT|CTA|CTPCT|PCYT1|SMDCRD phosphate cytidylyltransferase 1, choline, alpha protein-coding 13-PTNLD9-TUMOR_peak_30647 chr20 25003473 25003662 + 11.23959 NA intron (NM_001252677, intron 5 of 11) intron (NM_001252677, intron 5 of 11) 9775 NM_001252676 84532 Hs.529353 NM_032501 HPRD:12413 ACSS1 ACAS2L|ACECS1|AceCS2L acyl-CoA synthetase short-chain family member 1 protein-coding 13-PTNLD9-TUMOR_peak_29055 chr2 171729858 171730001 + 11.23959 NA Intergenic Intergenic -55019 NM_001201428 26003 Hs.431317 NM_015530 HPRD:08303 GORASP2 GOLPH6|GRASP55|GRS2|p59 golgi reassembly stacking protein 2, 55kDa protein-coding 13-PTNLD9-TUMOR_peak_31955 chr21 16594406 16594620 + 11.22200 NA Intergenic Intergenic -157387 NM_003489 8204 Hs.155017 NM_003489 HPRD:03927 NRIP1 RIP140 nuclear receptor interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_39807 chr4 165878016 165878257 + 11.22200 NA promoter-TSS (NM_153027) promoter-TSS (NM_153027) 36 NM_153027 152756 Hs.178648 NM_153027 HPRD:08714 FAM218A C4orf39 family with sequence similarity 218, member A protein-coding 13-PTNLD9-TUMOR_peak_22354 chr17 80594567 80594745 + 11.22200 NA intron (NM_019613, intron 2 of 9) LTR10G|LTR|ERV1 11755 NM_019613 56270 Hs.132161 NM_019613 HPRD:15669 WDR45B WDR45L|WIPI-3|WIPI3 WD repeat domain 45B protein-coding 13-PTNLD9-TUMOR_peak_13156 chr12 64855436 64855805 + 11.22200 NA intron (NM_013254, intron 3 of 20) MER77B|LTR|ERVL 9780 NM_013254 29110 Hs.505874 NM_013254 HPRD:05322 TBK1 NAK|T2K TANK-binding kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_47375 chr7 44809356 44809630 + 11.22200 NA TTS (NM_174929) TTS (NM_174929) 13706 NM_174929 83637 Hs.77978 NM_031449 HPRD:13225 ZMIZ2 NET27|TRAFIP20|ZIMP7|hZIMP7 zinc finger, MIZ-type containing 2 protein-coding 13-PTNLD9-TUMOR_peak_18471 chr16 10130184 10130464 + 11.22200 NA intron (NM_000833, intron 3 of 13) AluY|SINE|Alu 145600 NM_001134408 2903 Hs.411472 NM_000833 HPRD:00698 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate receptor, ionotropic, N-methyl D-aspartate 2A protein-coding 13-PTNLD9-TUMOR_peak_2389 chr1 88807951 88808116 + 11.22200 NA Intergenic L1PA2|LINE|L1 -341889 NM_006256 5586 Hs.440833 NM_006256 HPRD:03972 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 13-PTNLD9-TUMOR_peak_9126 chr11 13139734 13139985 + 11.22200 NA Intergenic FordPrefect|DNA|hAT-Tip100 108889 NM_001080521 644943 Hs.134650 NM_001080521 RASSF10 - Ras association (RalGDS/AF-6) domain family (N-terminal) member 10 protein-coding 13-PTNLD9-TUMOR_peak_31543 chr20 51833329 51833838 + 11.22200 NA intron (NM_001193421, intron 1 of 2) intron (NM_001193421, intron 1 of 2) 31761 NM_001193421 128553 Hs.473117 NM_173485 HPRD:10730 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 13-PTNLD9-TUMOR_peak_7613 chr10 71529235 71529377 + 11.22200 NA Intergenic Intergenic -32338 NM_080802 1305 Hs.695934 NM_005203 HPRD:00383 COL13A1 COLXIIIA1 collagen, type XIII, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_7526 chr10 65281558 65281903 + 11.22200 NA intron (NM_001001330, intron 1 of 7) CpG 607 NM_001001330 221035 Hs.499833 NM_001001330 HPRD:16582 REEP3 C10orf74 receptor accessory protein 3 protein-coding 13-PTNLD9-TUMOR_peak_37796 chr4 6774185 6774619 + 11.22072 NA Intergenic Intergenic -10057 NM_001100590 9778 Hs.79276 NM_014743 HPRD:11070 KIAA0232 - KIAA0232 protein-coding 13-PTNLD9-TUMOR_peak_8726 chr11 394002 394257 + 11.22072 NA promoter-TSS (NM_007183) promoter-TSS (NM_007183) -88 NM_007183 11187 Hs.534395 NM_007183 HPRD:05711 PKP3 - plakophilin 3 protein-coding 13-PTNLD9-TUMOR_peak_36500 chr3 156534688 156535060 + 11.22072 NA promoter-TSS (NR_038387) promoter-TSS (NR_038387) -23 NR_038387 730091 Hs.659905 NR_038387 ENSG00000240875 LINC00886 - long intergenic non-protein coding RNA 886 ncRNA 13-PTNLD9-TUMOR_peak_49060 chr7 129915623 129915918 + 11.22056 NA intron (NM_001869, intron 6 of 10) intron (NM_001869, intron 6 of 10) 9067 NM_001869 1358 Hs.490038 NM_001869 HPRD:02821 CPA2 - carboxypeptidase A2 (pancreatic) protein-coding 13-PTNLD9-TUMOR_peak_52850 chr9 19229828 19230181 + 11.22056 NA promoter-TSS (NM_017925) promoter-TSS (NM_017925) -759 NR_073201 55667 Hs.249591 NM_017925 HPRD:12927 DENND4C C9orf55|C9orf55B|bA513M16.3 DENN/MADD domain containing 4C protein-coding 13-PTNLD9-TUMOR_peak_13256 chr12 68978455 68978860 + 11.21463 NA Intergenic Intergenic -25962 NM_001251922 5908 Hs.369920 NM_015646 HPRD:01546 RAP1B K-REV|RAL1B RAP1B, member of RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_21716 chr17 60902280 60902451 + 11.21463 NA intron (NR_036146, intron 3 of 3) intron (NR_036146, intron 3 of 3) -16623 NM_152598 162333 Hs.665663 NM_152598 HPRD:08762 MARCH10 MARCH-X|RNF190 membrane-associated ring finger (C3HC4) 10, E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_48810 chr7 108165831 108165993 + 11.21246 NA intron (NM_001256011, intron 1 of 10) intron (NM_001256011, intron 1 of 10) 850 NM_001256008 50640 Hs.617340 NM_015723 HPRD:13741 PNPLA8 IPLA2(GAMMA)|IPLA2-2|IPLA2G|iPLA2gamma patatin-like phospholipase domain containing 8 protein-coding 13-PTNLD9-TUMOR_peak_20305 chr17 4417008 4417153 + 11.20612 NA intron (NM_001124758, intron 2 of 12) intron (NM_001124758, intron 2 of 12) 14951 NM_001124758 124976 Hs.22824 NM_001124758 SPNS2 - spinster homolog 2 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_37046 chr3 185928224 185928491 + 11.20612 NA intron (NM_001080744, intron 20 of 23) intron (NM_001080744, intron 20 of 23) -101456 NM_004454 2119 Hs.43697 NM_004454 HPRD:09035 ETV5 ERM ets variant 5 protein-coding 13-PTNLD9-TUMOR_peak_6939 chr10 35595857 35596118 + 11.20612 NA intron (NM_181698, intron 3 of 11) intron (NM_181698, intron 3 of 11) -29815 NM_145012 219771 Hs.14745 NM_145012 HPRD:10700 CCNY C10orf9|CBCP1|CCNX|CFP1 cyclin Y protein-coding 13-PTNLD9-TUMOR_peak_27109 chr2 65681163 65681397 + 11.20612 NA Intergenic Intergenic -21624 NM_181784 200734 Hs.59332 NM_181784 HPRD:18100 SPRED2 Spred-2 sprouty-related, EVH1 domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_29960 chr2 228568068 228568436 + 11.20612 NA intron (NM_025243, intron 1 of 5) intron (NM_025243, intron 1 of 5) 14493 NM_025243 80704 Hs.221597 NM_025243 HPRD:07311 SLC19A3 BBGD|THMD2|THTR2 solute carrier family 19 (thiamine transporter), member 3 protein-coding 13-PTNLD9-TUMOR_peak_42805 chr5 157912680 157913028 + 11.20612 NA Intergenic Intergenic -76073 NR_109888 101927697 Hs.483960 NR_109888 LOC101927697 - uncharacterized LOC101927697 ncRNA 13-PTNLD9-TUMOR_peak_54592 chr9 119355227 119355473 + 11.20612 NA intron (NM_198187, intron 4 of 8) intron (NM_198187, intron 4 of 8) 88788 NR_033973 100128505 Hs.675821 NR_033973 ENSG00000229105 ASTN2-AS1 - ASTN2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_2135 chr1 68179166 68179320 + 11.20612 NA intron (NM_018841, intron 2 of 3) intron (NM_018841, intron 2 of 3) 28383 NM_001924 1647 Hs.80409 NM_001924 HPRD:00528 GADD45A DDIT1|GADD45 growth arrest and DNA-damage-inducible, alpha protein-coding 13-PTNLD9-TUMOR_peak_53769 chr9 84402828 84403023 + 11.20612 NA Intergenic Intergenic 98297 NR_109772 101927502 Hs.528628 NR_109772 ENSG00000233926 LOC101927502 - uncharacterized LOC101927502 ncRNA 13-PTNLD9-TUMOR_peak_45305 chr6 52742092 52742275 + 11.20612 NA Intergenic Intergenic -31290 NM_153699 221357 Hs.646984 NM_153699 HPRD:09620 GSTA5 - glutathione S-transferase alpha 5 protein-coding 13-PTNLD9-TUMOR_peak_45909 chr6 111926975 111927316 + 11.20612 NA non-coding (NR_028338, exon 1 of 10) non-coding (NR_028338, exon 1 of 10) 332 NR_028338 10758 Hs.561514 NM_147200 HPRD:06129 TRAF3IP2 ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13 TRAF3 interacting protein 2 protein-coding 13-PTNLD9-TUMOR_peak_1820 chr1 53914770 53914916 + 11.20612 NA Intergenic MIRb|SINE|MIR -9150 NR_002314 163742 Hs.99394 NR_002314 ENSG00000236253 SLC25A3P1 - solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_44148 chr6 24865509 24865640 + 11.20612 NA exon (NM_015864, exon 7 of 14) exon (NM_015864, exon 7 of 14) 12019 NM_015864 9750 Hs.559459 NM_014722 HPRD:12881 FAM65B C6orf32|DIFF40|DIFF48|MYONAP|PL48 family with sequence similarity 65, member B protein-coding 13-PTNLD9-TUMOR_peak_34328 chr3 41725325 41725469 + 11.20612 NA intron (NM_017886, intron 27 of 36) intron (NM_017886, intron 27 of 36) 278263 NM_017886 54986 Hs.656192 NM_017886 HPRD:07928 ULK4 FAM7C1|REC01035 unc-51 like kinase 4 protein-coding 13-PTNLD9-TUMOR_peak_5094 chr1 203503751 203503940 + 11.20612 NA Intergenic Intergenic 40574 NM_014359 26254 Hs.632468 NM_014359 HPRD:05498 OPTC OPT opticin protein-coding 13-PTNLD9-TUMOR_peak_41415 chr5 80237382 80237627 + 11.20612 NA Intergenic Intergenic -19004 NM_006909 5924 Hs.162129 NM_006909 HPRD:07588 RASGRF2 GRF2|RAS-GRF2 Ras protein-specific guanine nucleotide-releasing factor 2 protein-coding 13-PTNLD9-TUMOR_peak_32503 chr21 45079348 45079528 + 11.20612 NA promoter-TSS (NM_007031) promoter-TSS (NM_007031) 6 NM_015056 23076 Hs.565725 NM_015056 HPRD:10009 RRP1B KIAA0179|NNP1L|Nnp1|PPP1R136|RRP1 ribosomal RNA processing 1B protein-coding 13-PTNLD9-TUMOR_peak_12238 chr12 15104123 15104272 + 11.20436 NA intron (NM_001175, intron 1 of 5) intron (NM_001175, intron 1 of 5) 10365 NM_001175 397 Hs.504877 NM_001175 HPRD:04162 ARHGDIB D4|GDIA2|GDID4|LYGDI|Ly-GDI|RAP1GN1|RhoGDI2 Rho GDP dissociation inhibitor (GDI) beta protein-coding 13-PTNLD9-TUMOR_peak_51676 chr8 117938996 117939297 + 11.20436 NA Intergenic MIR|SINE|MIR -11318 NM_001025357 441376 Hs.437551 NM_001025357 AARD C8orf85 alanine and arginine rich domain containing protein protein-coding 13-PTNLD9-TUMOR_peak_43674 chr6 7347924 7348177 + 11.20436 NA intron (NM_205864, intron 8 of 10) L1PB1|LINE|L1 -34503 NM_003144 6745 Hs.114033 NM_003144 HPRD:02924 SSR1 TRAPA signal sequence receptor, alpha protein-coding 13-PTNLD9-TUMOR_peak_45494 chr6 73659970 73660401 + 11.20436 NA intron (NM_001160133, intron 1 of 14) intron (NM_001160133, intron 1 of 14) 17291 NR_036244 100423005 NR_036244 miRBase:MI0015890 MIR4282 - microRNA 4282 ncRNA 13-PTNLD9-TUMOR_peak_42473 chr5 144911073 144911209 + 11.20436 NA Intergenic Intergenic 303791 NM_138492 153768 Hs.314261 NM_138492 HPRD:14479 PRELID2 - PRELI domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_12066 chr12 8147942 8148138 + 11.20436 NA Intergenic Intergenic -37319 NM_018416 55810 Hs.120844 NM_018416 HPRD:17014 FOXJ2 FHX forkhead box J2 protein-coding 13-PTNLD9-TUMOR_peak_41900 chr5 124237874 124238209 + 11.20436 NA Intergenic Intergenic -134483 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 13-PTNLD9-TUMOR_peak_30253 chr20 1099046 1099340 + 11.20436 NA promoter-TSS (NM_006814) promoter-TSS (NM_006814) -47 NM_006814 9491 Hs.471917 NM_006814 HPRD:17919 PSMF1 PI31 proteasome (prosome, macropain) inhibitor subunit 1 (PI31) protein-coding 13-PTNLD9-TUMOR_peak_126 chr1 2331472 2331649 + 11.20436 NA intron (NM_007033, intron 4 of 6) intron (NM_007033, intron 4 of 6) 8346 NM_007033 11079 Hs.525527 NM_007033 HPRD:17967 RER1 - retention in endoplasmic reticulum sorting receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_31667 chr20 55968731 55969044 + 11.20412 NA intron (NM_001291780, intron 4 of 4) intron (NM_001291780, intron 4 of 4) 2433 NM_001291780 55544 Hs.236361 NM_017495 HPRD:15268 RBM38 HSRNASEB|RNPC1|SEB4B|SEB4D|dJ800J21.2 RNA binding motif protein 38 protein-coding 13-PTNLD9-TUMOR_peak_1329 chr1 41329887 41330074 + 11.19896 NA Intergenic MIRc|SINE|MIR -1962 NM_133467 163732 Hs.355820 NM_133467 HPRD:06011 CITED4 - Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4 protein-coding 13-PTNLD9-TUMOR_peak_21208 chr17 43248338 43248573 + 11.19445 NA Intergenic Intergenic 10191 NM_144608 124790 Hs.56382 NM_144608 HPRD:08129 HEXIM2 - hexamethylene bis-acetamide inducible 2 protein-coding 13-PTNLD9-TUMOR_peak_35812 chr3 128266315 128266495 + 11.19428 NA Intergenic Intergenic 28524 NM_007354 23434 Hs.194283 NM_007354 HPRD:13607 C3orf27 GR6 chromosome 3 open reading frame 27 ncRNA 13-PTNLD9-TUMOR_peak_44775 chr6 35436009 35436598 + 11.19428 NA intron (NM_007104, intron 1 of 5) CpG 125 NM_007104 4736 Hs.148340 NM_007104 HPRD:10199 RPL10A CSA19|Csa-19|L10A|NEDD6 ribosomal protein L10a protein-coding 13-PTNLD9-TUMOR_peak_52464 chr8 144897097 144897275 + 11.19244 NA intron (NM_182706, intron 1 of 36) intron (NM_182706, intron 1 of 36) 363 NM_015356 23513 Hs.436329 NM_015356 HPRD:06984 SCRIB CRIB1|SCRB1|SCRIB1|Vartul scribbled planar cell polarity protein protein-coding 13-PTNLD9-TUMOR_peak_27013 chr2 61698162 61698599 + 11.18513 NA promoter-TSS (NM_014709) promoter-TSS (NM_014709) -531 NM_014709 9736 Hs.644708 NM_014709 HPRD:11665 USP34 - ubiquitin specific peptidase 34 protein-coding 13-PTNLD9-TUMOR_peak_2025 chr1 62787252 62787379 + 11.18513 NA Intergenic Intergenic -2232 NM_181712 163782 Hs.283398 NM_181712 HPRD:14109 KANK4 ANKRD38|dJ1078M7.1 KN motif and ankyrin repeat domains 4 protein-coding 13-PTNLD9-TUMOR_peak_4985 chr1 201851982 201852135 + 11.18513 NA 3' UTR (NM_018085, exon 24 of 24) 3' UTR (NM_018085, exon 24 of 24) -5739 NR_030775 149345 Hs.632471 NM_198149 HPRD:12729 SHISA4 C1orf40|TMEM58 shisa family member 4 protein-coding 13-PTNLD9-TUMOR_peak_5089 chr1 203476378 203476723 + 11.18513 NA intron (NM_014359, intron 7 of 7) intron (NM_014359, intron 7 of 7) 13279 NM_014359 26254 Hs.632468 NM_014359 HPRD:05498 OPTC OPT opticin protein-coding 13-PTNLD9-TUMOR_peak_39064 chr4 110482097 110482238 + 11.18513 NA intron (NM_017918, intron 1 of 7) intron (NM_017918, intron 1 of 7) 812 NM_017918 55013 Hs.234149 NM_017918 CCDC109B EMRE|MCUb coiled-coil domain containing 109B protein-coding 13-PTNLD9-TUMOR_peak_53821 chr9 86954921 86955081 + 11.18513 NA intron (NM_022127, intron 2 of 18) intron (NM_022127, intron 2 of 18) 693 NM_001199633 64078 Hs.535966 NM_022127 HPRD:12200 SLC28A3 CNT3 solute carrier family 28 (concentrative nucleoside transporter), member 3 protein-coding 13-PTNLD9-TUMOR_peak_12602 chr12 43363290 43363431 + 11.18168 NA Intergenic Intergenic -323060 NR_110042 101927058 Hs.434238 NR_110042 ENSG00000257510 LOC101927058 - uncharacterized LOC101927058 ncRNA 13-PTNLD9-TUMOR_peak_19271 chr16 48387616 48387755 + 11.18168 NA 3' UTR (NM_031490, exon 15 of 15) 3' UTR (NM_031490, exon 15 of 15) -1911 NR_040677 100507577 Hs.744137 NR_040677 ENSG00000102910 LOC100507577 - uncharacterized LOC100507577 ncRNA 13-PTNLD9-TUMOR_peak_52157 chr8 134215203 134215383 + 11.18168 NA intron (NM_001204870, intron 1 of 1) intron (NM_001204870, intron 1 of 1) 12011 NM_001204869 8840 Hs.492974 NM_003882 WISP1 CCN4|WISP1c|WISP1i|WISP1tc WNT1 inducible signaling pathway protein 1 protein-coding 13-PTNLD9-TUMOR_peak_9546 chr11 35843797 35843914 + 11.18168 NA Intergenic Intergenic -121757 NM_174902 143458 Hs.745134 NM_174902 HPRD:14063 LDLRAD3 LRAD3 low density lipoprotein receptor class A domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_50335 chr8 23145449 23145644 + 11.18168 NA promoter-TSS (NM_001136108) promoter-TSS (NM_001136108) -66 NM_001136108 203069 Hs.458644 NM_001136108 ENSG00000104679 R3HCC1 - R3H domain and coiled-coil containing 1 protein-coding 13-PTNLD9-TUMOR_peak_40285 chr5 10018897 10019066 + 11.18168 NA Intergenic Intergenic -115045 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LOC285692 - uncharacterized LOC285692 ncRNA 13-PTNLD9-TUMOR_peak_25403 chr19 50296811 50296978 + 11.18168 NA intron (NM_130787, intron 6 of 22) L2b|LINE|L2 1771 NR_106857 102465479 NR_106857 MIR6799 hsa-mir-6799 microRNA 6799 ncRNA 13-PTNLD9-TUMOR_peak_30339 chr20 4050553 4050705 + 11.18168 NA Intergenic MLT2D|LTR|ERVL -54413 NM_001134338 11237 Hs.589884 NM_007219 HPRD:10198 RNF24 G1L ring finger protein 24 protein-coding 13-PTNLD9-TUMOR_peak_26662 chr2 39811832 39812026 + 11.18168 NA intron (NR_037875, intron 5 of 5) intron (NR_037875, intron 5 of 5) -80709 NM_001167959 130733 Hs.40808 NM_152390 HPRD:14577 TMEM178A TMEM178 transmembrane protein 178A protein-coding 13-PTNLD9-TUMOR_peak_13895 chr12 113344646 113344832 + 11.18168 NA promoter-TSS (NM_001032409) promoter-TSS (NM_001032409) 0 NM_016816 4938 Hs.524760 NM_002534 HPRD:08879 OAS1 IFI-4|OIAS|OIASI 2'-5'-oligoadenylate synthetase 1, 40/46kDa protein-coding 13-PTNLD9-TUMOR_peak_35617 chr3 123969019 123969206 + 11.18168 NA intron (NM_001024660, intron 3 of 59) intron (NM_001024660, intron 3 of 59) 117336 NR_049798 100847021 NR_049798 MIR5002 - microRNA 5002 ncRNA 13-PTNLD9-TUMOR_peak_18343 chr16 4104008 4104270 + 11.18168 NA intron (NM_001116, intron 2 of 10) L2a|LINE|L2 62047 NM_001116 115 Hs.391860 NM_001116 HPRD:04489 ADCY9 AC9 adenylate cyclase 9 protein-coding 13-PTNLD9-TUMOR_peak_17675 chr15 75397167 75397517 + 11.18059 NA Intergenic Intergenic 61732 NM_001301105 60490 Hs.458922 NM_021823 HPRD:14377 PPCDC PPC-DC|coaC phosphopantothenoylcysteine decarboxylase protein-coding 13-PTNLD9-TUMOR_peak_7136 chr10 43248737 43248843 + 11.18059 NA Intergenic CpG -29164 NM_014753 9790 Hs.10848 NM_014753 HPRD:10689 BMS1 ACC|BMS1L BMS1 ribosome biogenesis factor protein-coding 13-PTNLD9-TUMOR_peak_16473 chr14 93439745 93439946 + 11.18059 NA intron (NM_001142593, intron 5 of 10) intron (NM_001142593, intron 5 of 10) 50400 NM_001275 1113 Hs.150793 NM_001275 HPRD:07170 CHGA CGA chromogranin A (parathyroid secretory protein 1) protein-coding 13-PTNLD9-TUMOR_peak_39154 chr4 119186988 119187303 + 11.18059 NA Intergenic LTR12C|LTR|ERV1 -12772 NR_034010 100093630 Hs.535762 NR_003584 ENSG00000269893 SNHG8 LINC00060|NCRNA00060 small nucleolar RNA host gene 8 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_33248 chr22 38301166 38301294 + 11.18059 NA promoter-TSS (NM_033386) promoter-TSS (NM_033386) -925 NM_033386 85377 Hs.517610 NM_033386 HPRD:11363 MICALL1 MICAL-L1|MIRAB13 MICAL-like 1 protein-coding 13-PTNLD9-TUMOR_peak_33693 chr3 9711928 9712046 + 11.18059 NA intron (NM_001077525, intron 5 of 18) intron (NM_001077525, intron 5 of 18) 20870 NM_022485 64419 Hs.475382 NM_022485 HPRD:08654 MTMR14 C3orf29 myotubularin related protein 14 protein-coding 13-PTNLD9-TUMOR_peak_42064 chr5 132449131 132449338 + 11.18059 NA Intergenic Intergenic 61572 NM_002154 3308 Hs.90093 NM_002154 HSPA4 APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY heat shock 70kDa protein 4 protein-coding 13-PTNLD9-TUMOR_peak_18975 chr16 30135686 30135981 + 11.18059 NA Intergenic Intergenic -1203 NM_002746 5595 Hs.861 NM_002746 HPRD:03479 MAPK3 ERK-1|ERK1|ERT2|HS44KDAP|HUMKER1A|P44ERK1|P44MAPK|PRKM3|p44-ERK1|p44-MAPK mitogen-activated protein kinase 3 protein-coding 13-PTNLD9-TUMOR_peak_52317 chr8 141502189 141502312 + 11.18059 NA Intergenic AluSz|SINE|Alu -19147 NM_017444 54108 Hs.279704 NM_017444 HPRD:06275 CHRAC1 CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1 chromatin accessibility complex 1 protein-coding 13-PTNLD9-TUMOR_peak_24375 chr19 18156969 18157241 + 11.17665 NA Intergenic L2a|LINE|L2 38128 NM_001286826 27106 Hs.515249 NM_015683 HPRD:12492 ARRDC2 CLONE24945 arrestin domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_31536 chr20 51697943 51698091 + 11.17665 NA intron (NM_173485, intron 1 of 2) Tigger9b|DNA|TcMar-Tigger -103805 NM_001193421 128553 Hs.473117 NM_173485 HPRD:10730 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 13-PTNLD9-TUMOR_peak_6217 chr1 249167927 249168165 + 11.17665 NA Intergenic Intergenic -14731 NM_001193328 55657 Hs.377705 NM_017865 HPRD:07922 ZNF692 AREBP|Zfp692 zinc finger protein 692 protein-coding 13-PTNLD9-TUMOR_peak_55305 chrUn_gl000222 144167 144282 + 11.17665 NA Intergenic SATR1|Satellite|Satellite -54914 NR_037925 647476 Hs.274541 NR_037925 FLJ20518 - FSHD region gene 2 family, member C pseudogene pseudo 13-PTNLD9-TUMOR_peak_54153 chr9 100307226 100307395 + 11.17665 NA intron (NM_001166116, intron 2 of 9) intron (NM_001166116, intron 2 of 9) 43389 NM_003275 7111 Hs.404289 NM_003275 HPRD:01838 TMOD1 D9S57E|ETMOD|TMOD tropomodulin 1 protein-coding 13-PTNLD9-TUMOR_peak_48443 chr7 98808008 98808174 + 11.17665 NA Intergenic Intergenic -3002 NM_001145715 402569 Hs.253050 NM_001145715 ENSG00000185467 KPNA7 - karyopherin alpha 7 (importin alpha 8) protein-coding 13-PTNLD9-TUMOR_peak_9306 chr11 20408709 20409531 + 11.17665 NA promoter-TSS (NM_001145167) promoter-TSS (NM_001145167) 44 NM_005788 10196 Hs.152337 NM_005788 HPRD:11934 PRMT3 HRMT1L3 protein arginine methyltransferase 3 protein-coding 13-PTNLD9-TUMOR_peak_1029 chr1 33685633 33685769 + 11.17665 NA Intergenic Intergenic -36473 NM_152493 149076 Hs.743358 NM_152493 HPRD:13394 ZNF362 RN|lin-29 zinc finger protein 362 protein-coding 13-PTNLD9-TUMOR_peak_12084 chr12 8549305 8549497 + 11.17665 NA Intergenic CpG -6053 NR_024420 389634 Hs.434403 NM_001012988 HPRD:18395 LINC00937 - long intergenic non-protein coding RNA 937 ncRNA 13-PTNLD9-TUMOR_peak_24374 chr19 18155808 18156017 + 11.17665 NA Intergenic Intergenic 36935 NM_001286826 27106 Hs.515249 NM_015683 HPRD:12492 ARRDC2 CLONE24945 arrestin domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_52359 chr8 142396961 142397118 + 11.17005 NA Intergenic Intergenic -19674 NM_005293 2843 Hs.188859 NM_005293 HPRD:03550 GPR20 - G protein-coupled receptor 20 protein-coding 13-PTNLD9-TUMOR_peak_35579 chr3 122803672 122803823 + 11.17005 NA intron (NR_028444, intron 1 of 15) intron (NR_028444, intron 1 of 15) 17891 NR_028444 10954 Hs.477352 NM_006810 HPRD:08334 PDIA5 PDIR protein disulfide isomerase family A, member 5 protein-coding 13-PTNLD9-TUMOR_peak_49555 chr7 148639023 148639200 + 11.16398 NA Intergenic AluSc|SINE|Alu -57670 NM_001203248 2146 Hs.444082 NM_004456 HPRD:03342 EZH2 ENX-1|ENX1|EZH1|EZH2b|KMT6|KMT6A|WVS|WVS2 enhancer of zeste 2 polycomb repressive complex 2 subunit protein-coding 13-PTNLD9-TUMOR_peak_32342 chr21 40393220 40393364 + 11.16398 NA Intergenic Intergenic -43592 NR_109962 101928435 Hs.385528 NR_109962 ENSG00000232837 LOC101928435 - uncharacterized LOC101928435 ncRNA 13-PTNLD9-TUMOR_peak_13884 chr12 112559812 112560053 + 11.16398 NA Intergenic Intergenic -3417 NM_001143906 10906 Hs.5148 NM_006700 HPRD:10994 TRAFD1 FLN29 TRAF-type zinc finger domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_35814 chr3 128268213 128268505 + 11.16398 NA Intergenic Intergenic 26570 NM_007354 23434 Hs.194283 NM_007354 HPRD:13607 C3orf27 GR6 chromosome 3 open reading frame 27 ncRNA 13-PTNLD9-TUMOR_peak_12586 chr12 42137676 42138007 + 11.15830 NA Intergenic LTR52-int|LTR|ERVL 306300 NM_013377 29951 Hs.380044 NM_013377 HPRD:15116 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 13-PTNLD9-TUMOR_peak_3637 chr1 151712551 151712714 + 11.15830 NA Intergenic HERV16-int|LTR|ERVL 18619 NM_001144956 284485 Hs.297967 NM_001144956 ENSG00000178796 RIIAD1 C1orf230|NCRNA00166 regulatory subunit of type II PKA R-subunit (RIIa) domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_37264 chr3 192852836 192852957 + 11.15830 NA Intergenic Intergenic -106021 NM_020386 57110 Hs.36761 NM_020386 HPRD:07577 HRASLS A-C1|H-REV107|HRASLS1|HRSL1|HSD28 HRAS-like suppressor protein-coding 13-PTNLD9-TUMOR_peak_25694 chr19 55986294 55986559 + 11.15632 NA Intergenic Intergenic -1273 NM_033113 89887 Hs.525209 NM_033113 HPRD:18317 ZNF628 ZEC|Zfp628 zinc finger protein 628 protein-coding 13-PTNLD9-TUMOR_peak_41089 chr5 66187424 66187605 + 11.15533 NA intron (NM_015183, intron 1 of 27) L2|LINE|L2 62910 NM_015183 375449 Hs.595458 NM_015183 HPRD:14195 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 13-PTNLD9-TUMOR_peak_2352 chr1 86983161 86983298 + 11.15533 NA Intergenic MER45B|DNA|hAT-Tip100 -29530 NR_024602 22802 Hs.567422 NM_012128 HPRD:16719 CLCA4 CaCC|CaCC2 chloride channel accessory 4 protein-coding 13-PTNLD9-TUMOR_peak_46220 chr6 146678704 146678828 + 11.15533 NA exon (NM_001278064, exon 5 of 8) exon (NM_001278064, exon 5 of 8) -186062 NM_006834 10981 Hs.287714 NM_006834 HPRD:06700 RAB32 - RAB32, member RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_2615 chr1 99611778 99611994 + 11.15533 NA intron (NR_033940, intron 2 of 2) MER52C|LTR|ERV1 -117962 NM_001166252 9890 Hs.13245 NM_014839 HPRD:07425 LPPR4 LPR4|PHP1|PRG-1|PRG1 lipid phosphate phosphatase-related protein type 4 protein-coding 13-PTNLD9-TUMOR_peak_6193 chr1 247578898 247579113 + 11.15533 NA promoter-TSS (NM_001127461) promoter-TSS (NM_001127461) -453 NM_001127461 114548 Hs.159483 NM_004895 HPRD:05915 NLRP3 AGTAVPRL|AII|AVP|C1orf7|CIAS1|CLR1.1|FCAS|FCU|MWS|NALP3|PYPAF1 NLR family, pyrin domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_31780 chr20 61334974 61335083 + 11.15533 NA Intergenic Intergenic -5161 NM_002531 4923 Hs.590869 NM_002531 HPRD:01218 NTSR1 NTR neurotensin receptor 1 (high affinity) protein-coding 13-PTNLD9-TUMOR_peak_50707 chr8 41516625 41516866 + 11.15533 NA intron (NM_020480, intron 2 of 2) MER82|DNA|TcMar-Tigger -1217 NR_106984 102465696 NR_106984 MIR486-2 hsa-mir-486-2 microRNA 486-2 ncRNA 13-PTNLD9-TUMOR_peak_48604 chr7 101435721 101435888 + 11.15533 NA Intergenic Intergenic -23380 NM_001913 1523 Hs.191482 NM_001913 HPRD:00295 CUX1 CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GOLIM6|Nbla10317|p100|p110|p200|p75 cut-like homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_27449 chr2 85906441 85906551 + 11.15533 NA Intergenic Intergenic -10632 NM_198843 6439 Hs.512690 NM_000542 HPRD:01523 SFTPB PSP-B|SFTB3|SFTP3|SMDP1|SP-B surfactant protein B protein-coding 13-PTNLD9-TUMOR_peak_29122 chr2 174569903 174570031 + 11.15533 NA Intergenic L1PA2|LINE|L1 258980 NM_001017371 6670 Hs.531587 NM_003111 HPRD:03483 SP3 SPR2 Sp3 transcription factor protein-coding 13-PTNLD9-TUMOR_peak_19367 chr16 54227570 54227856 + 11.15533 NA Intergenic Intergenic 92665 NM_024336 79191 Hs.499205 NM_024336 HPRD:17162 IRX3 IRX-1|IRXB1 iroquois homeobox 3 protein-coding 13-PTNLD9-TUMOR_peak_11238 chr11 112667181 112667360 + 11.15533 NA Intergenic Intergenic -164699 NM_181351 4684 Hs.503878 NM_000615 HPRD:00301 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 13-PTNLD9-TUMOR_peak_39320 chr4 129275706 129275927 + 11.15533 NA Intergenic Intergenic -65832 NM_006320 10424 Hs.507910 NM_006320 HPRD:09665 PGRMC2 DG6|PMBP progesterone receptor membrane component 2 protein-coding 13-PTNLD9-TUMOR_peak_50325 chr8 22907382 22907669 + 11.15533 NA intron (NM_003842, intron 1 of 8) PABL_A-int|LTR|ERV1 -18217 NR_038873 286059 Hs.306673 NR_038873 ENSG00000246130 LOC286059 - tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain pseudogene pseudo 13-PTNLD9-TUMOR_peak_28829 chr2 158485105 158485284 + 11.15533 NA 5' UTR (NM_145259, exon 1 of 9) 5' UTR (NM_145259, exon 1 of 9) 205 NM_001111032 130399 Hs.562901 NM_145259 HPRD:10608 ACVR1C ACVRLK7|ALK7 activin A receptor, type IC protein-coding 13-PTNLD9-TUMOR_peak_22768 chr18 20760176 20760540 + 11.15533 NA intron (NM_138375, intron 1 of 9) intron (NM_138375, intron 1 of 9) 24569 NM_138375 91768 Hs.11108 NM_138375 HPRD:16461 CABLES1 CABL1|CABLES|HsT2563|IK3-1 Cdk5 and Abl enzyme substrate 1 protein-coding 13-PTNLD9-TUMOR_peak_37140 chr3 188063104 188063332 + 11.15039 NA intron (NM_001167671, intron 2 of 10) intron (NM_001167671, intron 2 of 10) 120025 NM_001167671 4026 Hs.720220 NM_005578 HPRD:02828 LPP - LIM domain containing preferred translocation partner in lipoma protein-coding 13-PTNLD9-TUMOR_peak_45100 chr6 43667448 43667631 + 11.15039 NA Intergenic Intergenic -11990 NM_018135 55168 Hs.520149 NM_018135 HPRD:14780 MRPS18A HumanS18b|MRP-S18-3|MRPS18-3|S18bmt mitochondrial ribosomal protein S18A protein-coding 13-PTNLD9-TUMOR_peak_28202 chr2 118900070 118900456 + 11.15039 NA Intergenic L1PA2|LINE|L1 54213 NM_016133 51141 Hs.7089 NM_016133 HPRD:16361 INSIG2 - insulin induced gene 2 protein-coding 13-PTNLD9-TUMOR_peak_49644 chr7 150808259 150808368 + 11.14808 NA intron (NM_001042535, intron 1 of 8) intron (NM_001042535, intron 1 of 8) 24514 NM_001042535 116988 Hs.647075 NM_031946 HPRD:16707 AGAP3 AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3 ArfGAP with GTPase domain, ankyrin repeat and PH domain 3 protein-coding 13-PTNLD9-TUMOR_peak_3897 chr1 155951095 155951442 + 11.14109 NA Intergenic Intergenic -2932 NM_001162384 9181 Hs.743352 NM_004723 HPRD:10458 ARHGEF2 GEF|GEF-H1|GEFH1|LFP40|P40 Rho/Rac guanine nucleotide exchange factor (GEF) 2 protein-coding 13-PTNLD9-TUMOR_peak_24309 chr19 17393572 17393698 + 11.13882 NA intron (NR_103530, intron 3 of 7) CpG-13202 1181 NM_001278443 126549 Hs.721610 NM_152363 HPRD:08801 ANKLE1 ANKRD41|LEM3|LEMD6 ankyrin repeat and LEM domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_25974 chr2 3583610 3584179 + 11.13882 NA Intergenic Intergenic 22067 NM_001286834 246243 Hs.568006 NM_002936 HPRD:04989 RNASEH1 H1RNA|RNH1 ribonuclease H1 protein-coding 13-PTNLD9-TUMOR_peak_4305 chr1 167569612 167569748 + 11.13882 NA Intergenic Intergenic -29794 NM_052862 92241 Hs.493867 NM_052862 HPRD:10077 RCSD1 CAPZIP|MK2S4 RCSD domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_50957 chr8 55172609 55172713 + 11.13882 NA Intergenic Intergenic 124880 NM_014175 29088 Hs.18349 NM_014175 MRPL15 L15mt|MRP-L15|MRP-L7|RPML7 mitochondrial ribosomal protein L15 protein-coding 13-PTNLD9-TUMOR_peak_28605 chr2 139293942 139294089 + 11.13882 NA intron (NM_001001664, intron 1 of 10) L1M4b|LINE|L1 34665 NM_001001664 339745 Hs.333297 NM_001001664 HPRD:11261 SPOPL BTBD33 speckle-type POZ protein-like protein-coding 13-PTNLD9-TUMOR_peak_49919 chr8 224478 224749 + 11.13882 NA Intergenic Intergenic 42063 NM_001287254 169270 Hs.591388 NM_173539 HPRD:11731 ZNF596 - zinc finger protein 596 protein-coding 13-PTNLD9-TUMOR_peak_52632 chr9 2621388 2621539 + 11.13882 NA promoter-TSS (NM_003383) promoter-TSS (NM_003383) -330 NM_001018056 7436 Hs.370422 NM_003383 HPRD:01895 VLDLR CARMQ1|CHRMQ1|VLDLRCH very low density lipoprotein receptor protein-coding 13-PTNLD9-TUMOR_peak_45210 chr6 46701911 46702128 + 11.13882 NA intron (NM_001168357, intron 1 of 11) intron (NM_001168357, intron 1 of 11) 1132 NM_005084 7941 Hs.584823 NM_005084 HPRD:03407 PLA2G7 LDL-PLA2|LP-PLA2|PAFAD|PAFAH phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma) protein-coding 13-PTNLD9-TUMOR_peak_32878 chr22 22465433 22465660 + 11.13861 NA Intergenic Intergenic -128306 NM_001282113 8940 Hs.436401 NM_003935 HPRD:04662 TOP3B TOP3B1 topoisomerase (DNA) III beta protein-coding 13-PTNLD9-TUMOR_peak_24766 chr19 36036285 36036583 + 11.13861 NA promoter-TSS (NM_032635) promoter-TSS (NM_032635) -68 NM_001242598 10430 Hs.9234 NM_032635 HPRD:17633 TMEM147 NIFIE14 transmembrane protein 147 protein-coding 13-PTNLD9-TUMOR_peak_51310 chr8 94948307 94948454 + 11.13861 NA Intergenic LTR62|LTR|ERVL 19101 NM_001161781 54704 Hs.22265 NM_018444 HPRD:16185 PDP1 PDH|PDP|PDPC|PPM2C pyruvate dehyrogenase phosphatase catalytic subunit 1 protein-coding 13-PTNLD9-TUMOR_peak_10231 chr11 65316610 65316829 + 11.13785 NA intron (NM_001130144, intron 11 of 27) intron (NM_001130144, intron 11 of 27) 8980 NM_001130144 4054 Hs.289019 NM_021070 HPRD:03649 LTBP3 LTBP-3|LTBP2|STHAG6|pp6425 latent transforming growth factor beta binding protein 3 protein-coding 13-PTNLD9-TUMOR_peak_10446 chr11 69259354 69259523 + 11.13785 NA Intergenic Intergenic -40891 NR_120543 101928292 Hs.736219 NR_120542 LINC01488 - long intergenic non-protein coding RNA 1488 ncRNA 13-PTNLD9-TUMOR_peak_5923 chr1 234857635 234858023 + 11.13707 NA Intergenic Intergenic -1960 NR_038856 100506810 Hs.586634 NR_038856 ENSG00000227630 LINC01132 - long intergenic non-protein coding RNA 1132 ncRNA 13-PTNLD9-TUMOR_peak_27501 chr2 87568728 87568927 + 11.13617 NA Intergenic Intergenic -186147 NR_024204 112597 Hs.652166 NM_052871 HPRD:14654 LINC00152 C2orf59|NCRNA00152 long intergenic non-protein coding RNA 152 ncRNA 13-PTNLD9-TUMOR_peak_44262 chr6 26554343 26554537 + 11.13617 NA Intergenic Intergenic 15868 NM_006353 10473 Hs.236774 NM_006353 HMGN4 HMG17L3|NHC high mobility group nucleosomal binding domain 4 protein-coding 13-PTNLD9-TUMOR_peak_1571 chr1 45476866 45477110 + 11.13300 NA promoter-TSS (NM_000374) promoter-TSS (NM_000374) 39 NM_024602 79654 Hs.525084 NM_024602 HPRD:13383 HECTD3 - HECT domain containing E3 ubiquitin protein ligase 3 protein-coding 13-PTNLD9-TUMOR_peak_4010 chr1 158015524 158015724 + 11.12471 NA intron (NM_001286349, intron 1 of 12) MER21C|LTR|ERVL 52561 NM_018240 55243 Hs.272234 NM_018240 HPRD:06306 KIRREL NEPH1 kin of IRRE like (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_22677 chr18 14415855 14416016 + 11.12471 NA Intergenic Intergenic 78513 NR_026756 284233 Hs.607579 NR_026756 ENSG00000265787 CYP4F35P - cytochrome P450, family 4, subfamily F, polypeptide 35, pseudogene pseudo 13-PTNLD9-TUMOR_peak_26537 chr2 33591646 33591811 + 11.12471 NA intron (NM_000627, intron 27 of 29) MIRb|SINE|MIR -69688 NM_170672 25780 Hs.143674 NM_015376 HPRD:15213 RASGRP3 GRP3 RAS guanyl releasing protein 3 (calcium and DAG-regulated) protein-coding 13-PTNLD9-TUMOR_peak_54466 chr9 115176129 115176380 + 11.12471 NA intron (NM_032303, intron 4 of 10) LTR10C|LTR|ERV1 34065 NM_032303 84263 Hs.59486 NM_032303 HPRD:13679 HSDL2 C9orf99|SDR13C1 hydroxysteroid dehydrogenase like 2 protein-coding 13-PTNLD9-TUMOR_peak_28724 chr2 151773569 151773902 + 11.12471 NA Intergenic Intergenic 288324 NR_110245 101929282 Hs.126866 NR_110244 LOC101929282 - uncharacterized LOC101929282 ncRNA 13-PTNLD9-TUMOR_peak_10857 chr11 87080325 87080537 + 11.12471 NA Intergenic Intergenic 331545 NR_033149 65084 Hs.188591 NM_022918 TMEM135 PMP52 transmembrane protein 135 protein-coding 13-PTNLD9-TUMOR_peak_22979 chr18 38655252 38655390 + 11.12471 NA Intergenic MamGypLTR3|LTR|Gypsy 445240 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 13-PTNLD9-TUMOR_peak_43021 chr5 171906065 171906246 + 11.12471 NA Intergenic Intergenic -24628 NM_001017995 285590 Hs.285666 NM_001017995 HPRD:18591 SH3PXD2B FAD49|FTHS|HOFI|KIAA1295|TKS4|TSK4 SH3 and PX domains 2B protein-coding 13-PTNLD9-TUMOR_peak_33228 chr22 37948904 37949107 + 11.12471 NA Intergenic Intergenic -7466 NM_152243 11135 Hs.225356 NM_152243 HPRD:07303 CDC42EP1 BORG5|CEP1|MSE55 CDC42 effector protein (Rho GTPase binding) 1 protein-coding 13-PTNLD9-TUMOR_peak_30272 chr20 1785927 1786096 + 11.12471 NA Intergenic MER115|DNA|hAT-Tip100 -25619 NR_037142 100289473 Hs.641525 NR_037142 ENSG00000232528 LOC100289473 - cytoskeleton associated protein 2-like pseudogene pseudo 13-PTNLD9-TUMOR_peak_4890 chr1 199728396 199728827 + 11.12471 NA Intergenic Intergenic -268119 NM_003822 2494 Hs.33446 NM_003822 HPRD:06830 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5, group A, member 2 protein-coding 13-PTNLD9-TUMOR_peak_29560 chr2 202711316 202711519 + 11.12471 NA intron (NM_001261435, intron 8 of 13) Kanga1b|DNA|TcMar-Tc2 40115 NM_001261436 65061 Hs.348711 NM_139158 HPRD:12449 CDK15 ALS2CR7|PFTAIRE2|PFTK2 cyclin-dependent kinase 15 protein-coding 13-PTNLD9-TUMOR_peak_12826 chr12 52673418 52673788 + 11.11836 NA Intergenic Intergenic 11696 NM_002281 3887 Hs.658118 NM_002281 HPRD:03691 KRT81 HB1|Hb-1|KRTHB1|MLN137|ghHkb1|hHAKB2-1 keratin 81 protein-coding 13-PTNLD9-TUMOR_peak_7922 chr10 87403714 87403889 + 11.11517 NA intron (NM_017551, intron 13 of 15) intron (NM_017551, intron 13 of 15) 66313 NR_038986 100507470 Hs.585483 NR_038986 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_52343 chr8 142216146 142216262 + 11.11517 NA Intergenic CpG 22469 NM_001080431 57210 Hs.372492 NM_001080431 ENSG00000022567 SLC45A4 - solute carrier family 45, member 4 protein-coding 13-PTNLD9-TUMOR_peak_22484 chr18 3652850 3653107 + 11.11517 NA intron (NM_001242764, intron 4 of 9) intron (NM_001242764, intron 4 of 9) 49243 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_35009 chr3 75411235 75411590 + 11.11517 NA Intergenic HERVE-int|LTR|ERV1 72854 NR_024241 692099 Hs.591652 NR_024241 ENSG00000244026 FAM86DP FAM86D family with sequence similarity 86, member D, pseudogene pseudo 13-PTNLD9-TUMOR_peak_22586 chr18 10525159 10525385 + 11.11517 NA promoter-TSS (NM_003826) promoter-TSS (NM_003826) -601 NM_003826 8774 Hs.464622 NM_003826 HPRD:04448 NAPG GAMMASNAP N-ethylmaleimide-sensitive factor attachment protein, gamma protein-coding 13-PTNLD9-TUMOR_peak_28721 chr2 151383428 151383603 + 11.11268 NA Intergenic Intergenic -39306 NM_001254738 390 Hs.6838 NM_005168 HPRD:04233 RND3 ARHE|Rho8|RhoE|memB Rho family GTPase 3 protein-coding 13-PTNLD9-TUMOR_peak_45162 chr6 44767909 44768449 + 11.11268 NA Intergenic Intergenic 364801 NR_039785 100616352 NR_039785 MIR4642 - microRNA 4642 ncRNA 13-PTNLD9-TUMOR_peak_32427 chr21 43805235 43805673 + 11.11268 NA intron (NR_046020, intron 6 of 12) intron (NR_046020, intron 6 of 12) 3804 NM_032404 64699 Hs.208600 NM_024022 HPRD:05696 TMPRSS3 DFNB10|DFNB8|ECHOS1|TADG12 transmembrane protease, serine 3 protein-coding 13-PTNLD9-TUMOR_peak_38615 chr4 76912050 76912227 + 11.11268 NA promoter-TSS (NM_018115) promoter-TSS (NM_018115) -23 NM_018115 55153 Hs.632604 NM_018115 HPRD:10214 SDAD1 - SDA1 domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_3804 chr1 154713888 154714046 + 11.11268 NA intron (NM_001204087, intron 3 of 8) intron (NM_001204087, intron 3 of 8) -113511 NM_001025107 103 Hs.12341 NM_001111 HPRD:07528 ADAR ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136 adenosine deaminase, RNA-specific protein-coding 13-PTNLD9-TUMOR_peak_32170 chr21 34733254 34733830 + 11.11268 NA Intergenic Intergenic 36328 NM_000629 3454 Hs.529400 NM_000629 HPRD:00126 IFNAR1 AVP|IFN-alpha-REC|IFNAR|IFNBR|IFRC interferon (alpha, beta and omega) receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_15411 chr14 25517831 25517964 + 11.11268 NA intron (NM_014178, intron 1 of 5) intron (NM_014178, intron 1 of 5) 1198 NM_014178 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 amisyn syntaxin binding protein 6 (amisyn) protein-coding 13-PTNLD9-TUMOR_peak_49992 chr8 6966989 6967116 + 11.11268 NA Intergenic Intergenic -52793 NM_021010 1670 Hs.655233 NM_021010 HPRD:02720 DEFA5 DEF5|HD-5 defensin, alpha 5, Paneth cell-specific protein-coding 13-PTNLD9-TUMOR_peak_52351 chr8 142313859 142314062 + 11.10757 NA Intergenic Intergenic -36688 NR_024441 731779 Hs.586414 NR_024441 ENSG00000253595 LINC01300 - long intergenic non-protein coding RNA 1300 ncRNA 13-PTNLD9-TUMOR_peak_53320 chr9 43574087 43574339 + 11.10516 NA Intergenic Intergenic 56517 NM_001145196 389730 Hs.455299 NM_001145196 ENSG00000185775 SPATA31A6 FAM75A6 SPATA31 subfamily A, member 6 protein-coding 13-PTNLD9-TUMOR_peak_1136 chr1 36665884 36666090 + 11.10516 NA Intergenic L2b|LINE|L2 -24030 NM_005119 9967 Hs.744057 NM_005119 HPRD:07543 THRAP3 TRAP150 thyroid hormone receptor associated protein 3 protein-coding 13-PTNLD9-TUMOR_peak_53801 chr9 86136365 86136643 + 11.10471 NA intron (NM_001244959, intron 1 of 14) intron (NM_001244959, intron 1 of 14) 16844 NM_001244959 257019 Hs.127535 NM_174938 HPRD:07402 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_22829 chr18 24067524 24067742 + 11.10471 NA intron (NM_001258222, intron 2 of 4) intron (NM_001258222, intron 2 of 4) 60867 NM_001142730 284252 Hs.526630 NM_198991 HPRD:11059 KCTD1 C18orf5|SENS potassium channel tetramerization domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_52021 chr8 129279825 129280069 + 11.10471 NA Intergenic Intergenic 117585 NR_031613 100302281 NR_031613 miRBase:MI0006341 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 13-PTNLD9-TUMOR_peak_13944 chr12 116893461 116893748 + 11.10471 NA Intergenic Intergenic -27481 NR_039683 100616309 NR_039683 miRBase:MI0016824 MIR4472-2 - microRNA 4472-2 ncRNA 13-PTNLD9-TUMOR_peak_40440 chr5 17000500 17000628 + 11.10471 NA Intergenic Intergenic -64179 NM_012334 4651 Hs.481720 NM_012334 HPRD:03283 MYO10 - myosin X protein-coding 13-PTNLD9-TUMOR_peak_37532 chr4 619031 619376 + 11.10471 NA promoter-TSS (NM_001145291) promoter-TSS (NM_001145291) -160 NM_000283 5158 Hs.623810 NM_000283 HPRD:01571 PDE6B CSNB3|CSNBAD2|PDEB|RP40|rd1 phosphodiesterase 6B, cGMP-specific, rod, beta protein-coding 13-PTNLD9-TUMOR_peak_40038 chr4 186733345 186733484 + 11.10471 NA promoter-TSS (NM_001145670) promoter-TSS (NM_001145670) -4 NM_003603 8470 Hs.619806 NM_003603 HPRD:12473 SORBS2 ARGBP2|PRO0618 sorbin and SH3 domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_27587 chr2 90190457 90190658 + 11.10471 NA Intergenic LTR16C|LTR|ERVL 1078673 NR_039635 100616399 NR_039635 miRBase:MI0016776 MIR4436A - microRNA 4436a ncRNA 13-PTNLD9-TUMOR_peak_42622 chr5 149674817 149675141 + 11.10471 NA TTS (NM_001012301) TTS (NM_001012301) -5576 NM_171825 815 Hs.743976 NM_015981 HPRD:06532 CAMK2A CAMKA calcium/calmodulin-dependent protein kinase II alpha protein-coding 13-PTNLD9-TUMOR_peak_45285 chr6 52416394 52416581 + 11.10471 NA intron (NM_012288, intron 1 of 10) intron (NM_012288, intron 1 of 10) 25375 NM_012288 9697 Hs.520182 NM_012288 HPRD:16338 TRAM2 - translocation associated membrane protein 2 protein-coding 13-PTNLD9-TUMOR_peak_7536 chr10 65850702 65850873 + 11.10471 NA Intergenic Intergenic 569664 NM_001001330 221035 Hs.499833 NM_001001330 HPRD:16582 REEP3 C10orf74 receptor accessory protein 3 protein-coding 13-PTNLD9-TUMOR_peak_38151 chr4 27241410 27241570 + 11.10471 NA Intergenic Intergenic 379177 NM_020860 57620 Hs.744950 NM_020860 HPRD:11609 STIM2 - stromal interaction molecule 2 protein-coding 13-PTNLD9-TUMOR_peak_28521 chr2 133728210 133728426 + 11.10471 NA intron (NM_207481, intron 7 of 17) intron (NM_207481, intron 7 of 17) -295449 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 LOC101928161 - uncharacterized LOC101928161 ncRNA 13-PTNLD9-TUMOR_peak_50605 chr8 37396513 37396686 + 11.10471 NA Intergenic Intergenic -17695 NR_121621 100507420 Hs.105962 NR_121620 LOC100507420 - uncharacterized LOC100507420 ncRNA 13-PTNLD9-TUMOR_peak_48916 chr7 126341192 126341370 + 11.10471 NA intron (NM_001127323, intron 7 of 10) intron (NM_001127323, intron 7 of 10) 356957 NR_030323 693177 NR_030323 MIR592 MIRN592|hsa-mir-592 microRNA 592 ncRNA 13-PTNLD9-TUMOR_peak_24131 chr19 13792534 13792818 + 11.10471 NA Intergenic MER66A|LTR|ERV1 -66077 NM_030818 81576 Hs.24998 NM_030818 HPRD:11304 CCDC130 - coiled-coil domain containing 130 protein-coding 13-PTNLD9-TUMOR_peak_27371 chr2 80538528 80538660 + 11.10471 NA intron (NM_001282600, intron 1 of 11) intron (NM_001282600, intron 1 of 11) -1910 NM_001282599 1496 Hs.167368 NM_004389 HPRD:00228 CTNNA2 CAP-R|CAPR|CT114|CTNR catenin (cadherin-associated protein), alpha 2 protein-coding 13-PTNLD9-TUMOR_peak_19542 chr16 66751815 66752036 + 11.10471 NA Intergenic Intergenic -21315 NM_178818 146223 Hs.643961 NM_178818 HPRD:07435 CMTM4 CKLFSF4 CKLF-like MARVEL transmembrane domain containing 4 protein-coding 13-PTNLD9-TUMOR_peak_4066 chr1 159893115 159893270 + 11.10421 NA intron (NM_003564, intron 1 of 4) intron (NM_003564, intron 1 of 4) 315 NM_001277224 8407 Hs.517168 NM_003564 HPRD:06864 TAGLN2 HA1756 transgelin 2 protein-coding 13-PTNLD9-TUMOR_peak_25488 chr19 51504908 51505075 + 11.10405 NA promoter-TSS (NM_144507) promoter-TSS (NM_144507) -33 NM_001281431 11202 Hs.104570 NM_007196 HPRD:05733 KLK8 HNP|NP|NRPN|PRSS19|TADG14 kallikrein-related peptidase 8 protein-coding 13-PTNLD9-TUMOR_peak_56653 chrX 152338141 152338353 + 11.10405 NA promoter-TSS (NM_032882) promoter-TSS (NM_032882) -12 NM_032882 84968 Hs.533301 NM_032882 HPRD:06637 PNMA6A MA6|PNMA6|PNMA6C paraneoplastic Ma antigen family member 6A protein-coding 13-PTNLD9-TUMOR_peak_32497 chr21 44936802 44937155 + 11.10106 NA Intergenic Intergenic -38875 NR_026863 114038 Hs.592161 NM_153752 HPRD:10770 LINC00313 C21orf84|NCRNA00313 long intergenic non-protein coding RNA 313 ncRNA 13-PTNLD9-TUMOR_peak_4161 chr1 161591919 161592083 + 11.10106 NA TTS (NM_001271036) TTS (NM_001271036) 8836 NM_001271036 2215 Hs.372679 NM_000570 HPRD:09951 FCGR3B CD16|CD16b|FCG3|FCGR3|FCR-10|FCRIII|FCRIIIb Fc fragment of IgG, low affinity IIIb, receptor (CD16b) protein-coding 13-PTNLD9-TUMOR_peak_430 chr1 11847700 11847872 + 11.10106 NA 3' UTR (NM_005957, exon 12 of 12) 3' UTR (NM_005957, exon 12 of 12) -18367 NM_001256959 1185 Hs.193043 NM_001286 HPRD:04102 CLCN6 CLC-6 chloride channel, voltage-sensitive 6 protein-coding 13-PTNLD9-TUMOR_peak_22329 chr17 80255306 80255524 + 11.09909 NA Intergenic Intergenic 20065 NM_006137 924 Hs.36972 NM_006137 HPRD:01732 CD7 GP40|LEU-9|TP41|Tp40 CD7 molecule protein-coding 13-PTNLD9-TUMOR_peak_40020 chr4 186228428 186228642 + 11.09825 NA intron (NM_031953, intron 6 of 18) intron (NM_031953, intron 6 of 18) 71617 NM_018409 55805 Hs.558513 NM_018409 HPRD:10911 LRP2BP - LRP2 binding protein protein-coding 13-PTNLD9-TUMOR_peak_23301 chr18 56312831 56313012 + 11.09825 NA Intergenic HERVH-int|LTR|ERV1 -16732 NM_052947 115701 Hs.628152 NM_052947 HPRD:11019 ALPK2 HAK alpha-kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_30606 chr20 23142980 23143164 + 11.09825 NA Intergenic L2a|LINE|L2 -29799 NR_034149 200261 Hs.352228 NM_182535 HPRD:14124 LINC00656 - long intergenic non-protein coding RNA 656 ncRNA 13-PTNLD9-TUMOR_peak_31140 chr20 43201253 43202055 + 11.09825 NA intron (NM_007066, intron 1 of 3) intron (NM_007066, intron 1 of 3) -9536 NM_001281445 11142 Hs.472831 NM_007066 HPRD:05379 PKIG PKI-gamma protein kinase (cAMP-dependent, catalytic) inhibitor gamma protein-coding 13-PTNLD9-TUMOR_peak_20143 chr16 89707521 89707853 + 11.09825 NA Intergenic LTR13_|LTR|ERVK -16465 NM_153025 124045 Hs.655171 NM_153025 HPRD:08105 SPATA33 C16orf55 spermatogenesis associated 33 protein-coding 13-PTNLD9-TUMOR_peak_36270 chr3 144976188 144976377 + 11.09825 NA Intergenic L1PA3|LINE|L1 903000 NM_000935 5352 Hs.477866 NM_000935 HPRD:03519 PLOD2 LH2|TLH procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 protein-coding 13-PTNLD9-TUMOR_peak_22166 chr17 76371768 76372143 + 11.08860 NA Intergenic Intergenic -2744 NR_110602 9489 Hs.654671 NM_024419 HPRD:17841 PGS1 - phosphatidylglycerophosphate synthase 1 protein-coding 13-PTNLD9-TUMOR_peak_25028 chr19 41682120 41682346 + 11.08048 NA Intergenic Intergenic -16882 NM_030622 29785 Hs.98370 NM_030622 HPRD:07481 CYP2S1 - cytochrome P450, family 2, subfamily S, polypeptide 1 protein-coding 13-PTNLD9-TUMOR_peak_35860 chr3 129330826 129331186 + 11.08048 NA Intergenic Intergenic -5424 NM_015103 23129 Hs.301685 NM_015103 HPRD:05046 PLXND1 PLEXD1 plexin D1 protein-coding 13-PTNLD9-TUMOR_peak_33217 chr22 37593704 37593948 + 11.08048 NA Intergenic Intergenic -9496 NM_031910 114904 Hs.22011 NM_031910 HPRD:12718 C1QTNF6 CTFP6|CTRP6|ZACRP6 C1q and tumor necrosis factor related protein 6 protein-coding 13-PTNLD9-TUMOR_peak_20066 chr16 88337837 88337979 + 11.08048 NA Intergenic Intergenic 110021 NR_110944 101928880 Hs.634835 NR_110944 ENSG00000260420 LOC101928880 LA16c-444G7.2 uncharacterized LOC101928880 ncRNA 13-PTNLD9-TUMOR_peak_39171 chr4 119756206 119756496 + 11.08048 NA intron (NM_014822, intron 1 of 22) intron (NM_014822, intron 1 of 22) 975 NM_014822 9871 Hs.189641 NM_014822 HPRD:06218 SEC24D - SEC24 family member D protein-coding 13-PTNLD9-TUMOR_peak_49458 chr7 142553788 142553919 + 11.08048 NA intron (NM_001280794, intron 1 of 18) intron (NM_001280794, intron 1 of 18) 1077 NM_001280794 2051 Hs.380089 NM_004445 HPRD:04133 EPHB6 HEP EPH receptor B6 protein-coding 13-PTNLD9-TUMOR_peak_51714 chr8 119558947 119559092 + 11.08048 NA intron (NR_109794, intron 2 of 4) intron (NR_109794, intron 2 of 4) -74221 NR_038210 552860 Hs.571527 NR_038210 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_4959 chr1 201431123 201431282 + 11.07949 NA Intergenic Intergenic 7097 NR_073080 23612 Hs.268557 NM_012396 HPRD:09519 PHLDA3 TIH1 pleckstrin homology-like domain, family A, member 3 protein-coding 13-PTNLD9-TUMOR_peak_12735 chr12 50135816 50136077 + 11.07340 NA exon (NM_001098576, exon 1 of 10) exon (NM_001098576, exon 1 of 10) 354 NM_001098576 7009 Hs.743965 NM_003217 HPRD:02851 TMBIM6 BAXI1|BI-1|TEGT transmembrane BAX inhibitor motif containing 6 protein-coding 13-PTNLD9-TUMOR_peak_36596 chr3 160283884 160284121 + 11.07340 NA promoter-TSS (NM_002268) promoter-TSS (NM_002268) -626 NM_002268 3840 Hs.467866 NM_002268 HPRD:04275 KPNA4 IPOA3|QIP1|SRP3 karyopherin alpha 4 (importin alpha 3) protein-coding 13-PTNLD9-TUMOR_peak_42655 chr5 150138544 150138712 + 11.07340 NA promoter-TSS (NM_016221) promoter-TSS (NM_016221) 29 NM_016221 51164 Hs.675564 NM_016221 HPRD:13126 DCTN4 DYN4|P62 dynactin 4 (p62) protein-coding 13-PTNLD9-TUMOR_peak_49909 chr7_gl000195_random 143027 143224 + 11.07290 NA Intergenic Intergenic -56406 NM_001242480 389831 Hs.743984 NM_001242480 LOC389831 - uncharacterized LOC389831 protein-coding 13-PTNLD9-TUMOR_peak_15282 chr14 21944725 21944877 + 11.07290 NA promoter-TSS (NM_014828) promoter-TSS (NM_014828) 31 NM_001163380 84932 Hs.22399 NM_032846 HPRD:06312 RAB2B - RAB2B, member RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_50443 chr8 27567185 27567402 + 11.06772 NA Intergenic Intergenic -8009 NR_037418 100500871 NR_037418 miRBase:MI0016014 MIR3622B - microRNA 3622b ncRNA 13-PTNLD9-TUMOR_peak_8197 chr10 103769680 103769827 + 11.06772 NA exon (NM_024541, exon 12 of 26) exon (NM_024541, exon 12 of 26) 46179 NM_024541 79591 Hs.16004 NM_024541 HPRD:12588 C10orf76 - chromosome 10 open reading frame 76 protein-coding 13-PTNLD9-TUMOR_peak_32590 chr21 47027128 47027303 + 11.06772 NA Intergenic Tigger3c|DNA|TcMar-Tigger -64830 NM_194255 6573 Hs.84190 NM_003056 HPRD:02691 SLC19A1 CHMD|FOLT|IFC1|REFC|RFC1 solute carrier family 19 (folate transporter), member 1 protein-coding 13-PTNLD9-TUMOR_peak_22667 chr18 13791302 13791475 + 11.06772 NA Intergenic L1ME3A|LINE|L1 -34155 NM_005913 4161 Hs.248145 NM_005913 HPRD:08965 MC5R MC2 melanocortin 5 receptor protein-coding 13-PTNLD9-TUMOR_peak_24876 chr19 38549150 38549307 + 11.06772 NA intron (NM_015073, intron 2 of 21) intron (NM_015073, intron 2 of 21) 151367 NM_015073 23094 Hs.655502 NM_015073 HPRD:18755 SIPA1L3 SPAL3 signal-induced proliferation-associated 1 like 3 protein-coding 13-PTNLD9-TUMOR_peak_51251 chr8 86987090 86987268 + 11.06772 NA Intergenic Intergenic 94672 NM_033126 85481 Hs.680136 NM_033126 HPRD:15192 PSKH2 - protein serine kinase H2 protein-coding 13-PTNLD9-TUMOR_peak_14718 chr13 46447735 46447902 + 11.06772 NA Intergenic Intergenic -21972 NM_198849 283514 Hs.368483 NM_198849 HPRD:14145 SIAH3 - siah E3 ubiquitin protein ligase family member 3 protein-coding 13-PTNLD9-TUMOR_peak_24743 chr19 35579529 35579689 + 11.06772 NA intron (NR_024561, intron 1 of 3) intron (NR_024561, intron 1 of 3) 17566 NR_024561 100128675 Hs.633989 NR_024561 ENSG00000227392 HPN-AS1 - HPN antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_38129 chr4 25955391 25955671 + 11.06772 NA Intergenic Intergenic 39717 NM_001145432 389203 Hs.479386 NM_001145432 ENSG00000250317 SMIM20 C4orf52 small integral membrane protein 20 protein-coding 13-PTNLD9-TUMOR_peak_42256 chr5 138440640 138440825 + 11.06772 NA intron (NM_022464, intron 3 of 9) intron (NM_022464, intron 3 of 9) 93333 NM_022464 64374 Hs.483521 NM_022464 HPRD:12150 SIL1 BAP|MSS|ULG5 SIL1 nucleotide exchange factor protein-coding 13-PTNLD9-TUMOR_peak_39288 chr4 125563264 125563450 + 11.06772 NA Intergenic Intergenic 70530 NM_001167882 57182 Hs.480694 NM_020337 HPRD:13843 ANKRD50 - ankyrin repeat domain 50 protein-coding 13-PTNLD9-TUMOR_peak_794 chr1 27234171 27234417 + 11.06772 NA Intergenic Intergenic 6273 NM_021969 8431 Hs.427055 NM_021969 HPRD:05219 NR0B2 SHP|SHP1 nuclear receptor subfamily 0, group B, member 2 protein-coding 13-PTNLD9-TUMOR_peak_19659 chr16 69432064 69432308 + 11.06772 NA Intergenic Intergenic -12295 NM_005652 7014 Hs.63335 NM_005652 HPRD:03610 TERF2 TRBF2|TRF2 telomeric repeat binding factor 2 protein-coding 13-PTNLD9-TUMOR_peak_43264 chr5 178062334 178062620 + 11.06772 NA Intergenic LTR44|LTR|ERV1 -8423 NM_020666 57396 Hs.406557 NM_020666 HPRD:12140 CLK4 - CDC-like kinase 4 protein-coding 13-PTNLD9-TUMOR_peak_30851 chr20 33528115 33528250 + 11.06747 NA intron (NM_000178, intron 6 of 12) intron (NM_000178, intron 6 of 12) 15419 NM_000178 2937 Hs.82327 NM_000178 HPRD:03000 GSS GSHS|HEL-S-64p|HEL-S-88n glutathione synthetase protein-coding 13-PTNLD9-TUMOR_peak_54059 chr9 97505923 97506278 + 11.06747 NA intron (NM_032823, intron 1 of 14) intron (NM_032823, intron 1 of 14) -15831 NM_001193329 84909 Hs.434253 NM_032823 HPRD:07476 C9orf3 AOPEP|AP-O|APO|C90RF3|ONPEP chromosome 9 open reading frame 3 protein-coding 13-PTNLD9-TUMOR_peak_17348 chr15 58439055 58439167 + 11.06747 NA intron (NM_020980, intron 1 of 5) intron (NM_020980, intron 1 of 5) 8703 NM_020980 366 Hs.104624 NM_020980 HPRD:04223 AQP9 AQP-9|HsT17287|SSC1 aquaporin 9 protein-coding 13-PTNLD9-TUMOR_peak_33759 chr3 11102564 11102850 + 11.06747 NA Intergenic Intergenic -41797 NR_046647 100874090 Hs.628542 NR_046647 ENSG00000232287 SLC6A1-AS1 - SLC6A1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_26875 chr2 47859190 47859423 + 11.06747 NA Intergenic Intergenic -61836 NM_022055 56660 Hs.591586 NM_022055 KCNK12 K2p12.1|THIK-2|THIK2 potassium channel, subfamily K, member 12 protein-coding 13-PTNLD9-TUMOR_peak_8181 chr10 102802857 102802969 + 11.06747 NA Intergenic Intergenic 11917 NM_030971 81855 Hs.283844 NM_030971 HPRD:15329 SFXN3 BA108L7.2|SFX3 sideroflexin 3 protein-coding 13-PTNLD9-TUMOR_peak_36271 chr3 145636181 145636288 + 11.06747 NA Intergenic L1PA3|LINE|L1 243048 NM_000935 5352 Hs.477866 NM_000935 HPRD:03519 PLOD2 LH2|TLH procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 protein-coding 13-PTNLD9-TUMOR_peak_21084 chr17 40481098 40481218 + 11.06747 NA intron (NM_139276, intron 14 of 23) intron (NM_139276, intron 14 of 23) 41084 NM_001288720 6776 Hs.437058 NM_003152 HPRD:03301 STAT5A MGF|STAT5 signal transducer and activator of transcription 5A protein-coding 13-PTNLD9-TUMOR_peak_40954 chr5 57099814 57100032 + 11.06747 NA Intergenic Intergenic 95066 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LOC101928539 - uncharacterized LOC101928539 ncRNA 13-PTNLD9-TUMOR_peak_37987 chr4 10462988 10463172 + 11.06314 NA Intergenic CpG -4048 NM_053042 85460 Hs.455089 NM_053042 HPRD:13889 ZNF518B - zinc finger protein 518B protein-coding 13-PTNLD9-TUMOR_peak_24453 chr19 19336001 19336183 + 11.06314 NA intron (NM_004386, intron 6 of 14) CpG-13339 13310 NM_004386 1463 Hs.169047 NM_004386 HPRD:02897 NCAN CSPG3 neurocan protein-coding 13-PTNLD9-TUMOR_peak_15387 chr14 24750112 24750375 + 11.06314 NA Intergenic Intergenic -9410 NM_004581 5875 Hs.377992 NM_004581 HPRD:03547 RABGGTA PTAR3 Rab geranylgeranyltransferase, alpha subunit protein-coding 13-PTNLD9-TUMOR_peak_42155 chr5 134582705 134582998 + 11.06314 NA intron (NR_037895, intron 2 of 3) intron (NR_037895, intron 2 of 3) 1016 NR_037895 340073 Hs.434422 NR_037895 ENSG00000249647 C5orf66-AS2 - C5orf66 antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_54452 chr9 114720395 114720814 + 11.06314 NA Intergenic Intergenic 26224 NR_039814 100616114 NR_039814 MIR4668 - microRNA 4668 ncRNA 13-PTNLD9-TUMOR_peak_26278 chr2 20817768 20817967 + 11.05675 NA 3' UTR (NM_022460, exon 7 of 7) 3' UTR (NM_022460, exon 7 of 7) -25559 NR_046836 100874343 Hs.591546 NR_046836 ENSG00000231948 HS1BP3-IT1 - HS1BP3 intronic transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_24222 chr19 15360860 15360997 + 11.05675 NA intron (NM_014299, intron 11 of 11) intron (NM_014299, intron 11 of 11) -17070 NM_001142886 79852 Hs.156457 NM_024794 HPRD:12410 EPHX3 ABHD9|EH3 epoxide hydrolase 3 protein-coding 13-PTNLD9-TUMOR_peak_34060 chr3 23537089 23537280 + 11.05675 NA intron (NR_039621, intron 1 of 2) intron (NR_039621, intron 1 of 2) 161558 NR_039621 100616384 NR_039621 MIR548AC - microRNA 548ac ncRNA 13-PTNLD9-TUMOR_peak_31100 chr20 41845192 41845391 + 11.05675 NA Intergenic LTR16C|LTR|ERVL -26734 NM_133170 11122 Hs.526879 NM_007050 HPRD:06690 PTPRT RPTPrho protein tyrosine phosphatase, receptor type, T protein-coding 13-PTNLD9-TUMOR_peak_37244 chr3 191872851 191873102 + 11.05675 NA intron (NM_021032, intron 4 of 4) L1PA2|LINE|L1 -83443 NR_046596 100873986 Hs.581652 NR_046596 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_46845 chr7 6746532 6746708 + 11.05675 NA promoter-TSS (NM_016265) promoter-TSS (NM_016265) -54 NM_016265 7559 Hs.431471 NM_006956 HPRD:11835 ZNF12 GIOT-3|HZF11|KOX3|ZNF325 zinc finger protein 12 protein-coding 13-PTNLD9-TUMOR_peak_37938 chr4 9171520 9171718 + 11.05452 NA Intergenic Intergenic -40764 NM_001256852 100287144 Hs.741130 NM_001256852 ENSG00000231396 USP17L10 - ubiquitin specific peptidase 17-like family member 10 protein-coding 13-PTNLD9-TUMOR_peak_40682 chr5 39699394 39699678 + 11.05452 NA Intergenic L2a|LINE|L2 179003 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LOC101926940 - uncharacterized LOC101926940 ncRNA 13-PTNLD9-TUMOR_peak_32069 chr21 30172412 30172595 + 11.05452 NA Intergenic Intergenic 85192 NR_047510 29104 Hs.163846 NM_013240 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 (putative) protein-coding 13-PTNLD9-TUMOR_peak_24618 chr19 29892611 29892747 + 11.05452 NA intron (NR_040029, intron 3 of 9) intron (NR_040029, intron 3 of 9) 123980 NR_040029 284395 Hs.631601 NR_040029 ENSG00000264515 LOC284395 - uncharacterized LOC284395 ncRNA 13-PTNLD9-TUMOR_peak_10914 chr11 93227574 93227909 + 11.05452 NA intron (NM_020179, intron 2 of 2) intron (NM_020179, intron 2 of 2) 48805 NM_020179 56935 Hs.438064 NM_020179 HPRD:17008 SMCO4 C11orf75|FN5 single-pass membrane protein with coiled-coil domains 4 protein-coding 13-PTNLD9-TUMOR_peak_26859 chr2 47445244 47445446 + 11.05452 NA intron (NR_110207, intron 2 of 2) intron (NR_110207, intron 2 of 2) -41605 NM_001743 805 Hs.468442 NM_001743 HPRD:00242 CALM2 CAMII|PHKD|PHKD2 calmodulin 2 (phosphorylase kinase, delta) protein-coding 13-PTNLD9-TUMOR_peak_6080 chr1 242153495 242153721 + 11.05452 NA Intergenic MLT1G|LTR|ERVL-MaLR 8777 NM_001004343 440738 Hs.534971 NM_001004343 HPRD:14226 MAP1LC3C ATG8J|LC3C microtubule-associated protein 1 light chain 3 gamma protein-coding 13-PTNLD9-TUMOR_peak_29415 chr2 194082956 194083067 + 11.05452 NA Intergenic L1HS|LINE|L1 468440 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1, prostate-specific transcript (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_36247 chr3 142854147 142854261 + 11.05452 NA Intergenic Intergenic 15586 NM_004267 9435 Hs.8786 NM_004267 CHST2 C6ST|GST-2|GST2|Gn6ST-1|HEL-S-75|glcNAc6ST-1 carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2 protein-coding 13-PTNLD9-TUMOR_peak_24790 chr19 36370731 36370891 + 11.05452 NA TTS (NM_005166) TTS (NM_005166) 11410 NM_005166 333 Hs.74565 NM_005166 HPRD:00102 APLP1 APLP amyloid beta (A4) precursor-like protein 1 protein-coding 13-PTNLD9-TUMOR_peak_1265 chr1 40119314 40119559 + 11.05452 NA Intergenic Intergenic -14088 NM_014571 26508 Hs.472566 NM_014571 HPRD:16419 HEYL HESR3|HEY3|HRT3|bHLHb33 hes-related family bHLH transcription factor with YRPW motif-like protein-coding 13-PTNLD9-TUMOR_peak_27341 chr2 75904572 75904668 + 11.05452 NA intron (NM_001201334, intron 12 of 16) MER20|DNA|hAT-Charlie 30711 NM_014763 9801 Hs.44024 NM_014763 MRPL19 L19mt|MRP-L15|MRP-L19|MRPL15|RLX1|RPML15 mitochondrial ribosomal protein L19 protein-coding 13-PTNLD9-TUMOR_peak_52283 chr8 139977173 139977329 + 11.05452 NA Intergenic Intergenic -51015 NM_152888 169044 Hs.117169 NM_152888 HPRD:09885 COL22A1 - collagen, type XXII, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_3294 chr1 145219075 145219265 + 11.04644 NA intron (NM_203458, intron 1 of 4) intron (NM_203458, intron 1 of 4) 10057 NM_203458 388677 Hs.655156 NM_203458 HPRD:14833 NOTCH2NL N2N notch 2 N-terminal like protein-coding 13-PTNLD9-TUMOR_peak_501 chr1 16006752 16006953 + 11.04625 NA Intergenic AluSz6|SINE|Alu -3975 NM_015164 23207 Hs.646775 NM_015164 ENSG00000116786 PLEKHM2 SKIP pleckstrin homology domain containing, family M (with RUN domain) member 2 protein-coding 13-PTNLD9-TUMOR_peak_33602 chr3 5059651 5059972 + 11.04625 NA Intergenic Intergenic 38714 NM_003670 8553 Hs.744856 NM_003670 HPRD:16050 BHLHE40 BHLHB2|DEC1|HLHB2|SHARP-2|STRA13|Stra14 basic helix-loop-helix family, member e40 protein-coding 13-PTNLD9-TUMOR_peak_49225 chr7 135020534 135020721 + 11.04625 NA Intergenic Intergenic 103896 NM_182489 346673 Hs.592279 NM_182489 HPRD:18123 STRA8 - stimulated by retinoic acid 8 protein-coding 13-PTNLD9-TUMOR_peak_43422 chr6 1486064 1486187 + 11.04625 NA Intergenic Intergenic -95479 NR_106778 102466720 NR_106778 MIR6720 hsa-mir-6720 microRNA 6720 ncRNA 13-PTNLD9-TUMOR_peak_1754 chr1 51435653 51435786 + 11.04625 NA promoter-TSS (NM_078626) promoter-TSS (NM_078626) 77 NM_078626 1031 Hs.525324 NM_001262 HPRD:04534 CDKN2C INK4C|p18|p18-INK4C cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4) protein-coding 13-PTNLD9-TUMOR_peak_30662 chr20 25290498 25290744 + 11.04408 NA intron (NM_001042472, intron 6 of 12) intron (NM_001042472, intron 6 of 12) 61915 NM_002862 5834 Hs.368157 NM_002862 HPRD:00720 PYGB GPBB phosphorylase, glycogen; brain protein-coding 13-PTNLD9-TUMOR_peak_50098 chr8 12073745 12073870 + 11.04120 NA Intergenic Intergenic -22183 NM_001083537 85002 Hs.675799 NM_001083537 HPRD:17515 FAM86B1 - family with sequence similarity 86, member B1 protein-coding 13-PTNLD9-TUMOR_peak_4948 chr1 201346087 201346252 + 11.04120 NA intron (NM_001276347, intron 1 of 15) intron (NM_001276347, intron 1 of 15) 659 NM_001276346 7139 Hs.533613 NM_000364 HPRD:01844 TNNT2 CMD1D|CMH2|CMPD2|LVNC6|RCM3|TnTC|cTnT troponin T type 2 (cardiac) protein-coding 13-PTNLD9-TUMOR_peak_56586 chrX 148622207 148622587 + 11.04120 NA promoter-TSS (NM_178124) promoter-TSS (NM_178124) -122 NM_178124 91966 Hs.534641 NM_178124 HPRD:06625 CXorf40A CXorf40|EOLA1 chromosome X open reading frame 40A protein-coding 13-PTNLD9-TUMOR_peak_30413 chr20 10655481 10655586 + 11.03579 NA promoter-TSS (NM_000214) promoter-TSS (NM_000214) -839 NM_000214 182 Hs.224012 NM_000214 HPRD:03562 JAG1 AGS|AHD|AWS|CD339|HJ1|JAGL1 jagged 1 protein-coding 13-PTNLD9-TUMOR_peak_12379 chr12 27484298 27484600 + 11.02507 NA Intergenic Intergenic -1338 NM_001248005 56938 Hs.445447 NM_020183 ARNTL2 BMAL2|CLIF|MOP9|PASD9|bHLHe6 aryl hydrocarbon receptor nuclear translocator-like 2 protein-coding 13-PTNLD9-TUMOR_peak_44608 chr6 32122477 32122611 + 11.02507 NA promoter-TSS (NR_037169) promoter-TSS (NR_037169) -402 NR_037172 100507547 Hs.549204 NR_037169 ENSG00000204314 LOC100507547 - uncharacterized LOC100507547 ncRNA 13-PTNLD9-TUMOR_peak_48963 chr7 127851823 127851991 + 11.02507 NA Intergenic Intergenic 3982 NR_029596 406917 NR_029596 miRBase:MI0000252 MIR129-1 MIR-129b|MIRN129-1 microRNA 129-1 ncRNA 13-PTNLD9-TUMOR_peak_37555 chr4 1033769 1034103 + 11.02382 NA Intergenic Intergenic 27684 NM_021923 53834 Hs.193326 NM_021923 HPRD:16163 FGFRL1 FGFR5|FHFR fibroblast growth factor receptor-like 1 protein-coding 13-PTNLD9-TUMOR_peak_36490 chr3 156348328 156348769 + 11.02334 NA Intergenic Intergenic -43657 NM_015508 25976 Hs.744050 NM_015508 HPRD:18192 TIPARP ARTD14|PARP7|pART14 TCDD-inducible poly(ADP-ribose) polymerase protein-coding 13-PTNLD9-TUMOR_peak_51542 chr8 106530684 106530822 + 11.02212 NA intron (NM_012082, intron 3 of 7) intron (NM_012082, intron 3 of 7) 199606 NM_012082 23414 Hs.431009 NM_012082 HPRD:04737 ZFPM2 DIH3|FOG2|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 13-PTNLD9-TUMOR_peak_22202 chr17 77303074 77303257 + 11.02212 NA intron (NM_001082575, intron 3 of 14) intron (NM_001082575, intron 3 of 14) 209065 NM_001082575 146713 Hs.135229 NM_001025448 HPRD:18730 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding protein, fox-1 homolog (C. elegans) 3 protein-coding 13-PTNLD9-TUMOR_peak_25680 chr19 55838991 55839105 + 11.02212 NA Intergenic ERV3-16A3_LTR|LTR|ERVL -2340 NM_001282011 284417 Hs.382625 NM_001085488 ENSG00000180061 TMEM150B TMEM224 transmembrane protein 150B protein-coding 13-PTNLD9-TUMOR_peak_24719 chr19 34808304 34808772 + 11.02212 NA intron (NM_014686, intron 2 of 13) MIR|SINE|MIR -47107 NM_001184722 2821 Hs.466471 NM_000175 HPRD:01394 GPI AMF|GNPI|NLK|PGI|PHI|SA-36|SA36 glucose-6-phosphate isomerase protein-coding 13-PTNLD9-TUMOR_peak_38198 chr4 38820069 38820307 + 11.02212 NA Intergenic LTR78B|LTR|ERV1 -13776 NM_003263 7096 Hs.621817 NM_003263 HPRD:03119 TLR1 CD281|TIL|TIL. LPRS5|rsc786 toll-like receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_27803 chr2 99529041 99529302 + 11.02212 NA intron (NM_207362, intron 1 of 9) intron (NM_207362, intron 1 of 9) 23513 NM_207362 343990 Hs.469398 NM_207362 HPRD:14620 KIAA1211L C2orf55 KIAA1211-like protein-coding 13-PTNLD9-TUMOR_peak_15868 chr14 57579005 57579171 + 11.02212 NA Intergenic L1PA2|LINE|L1 -156518 NM_018229 55745 Hs.597349 NM_018229 HPRD:12630 AP5M1 C14orf108|MUDENG|Mu5|MuD adaptor-related protein complex 5, mu 1 subunit protein-coding 13-PTNLD9-TUMOR_peak_28773 chr2 153962821 153962998 + 11.02212 NA Intergenic Intergenic 372413 NM_019845 56475 Hs.100890 NM_019845 HPRD:18002 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator candidate protein-coding 13-PTNLD9-TUMOR_peak_55031 chr9 139249258 139249420 + 11.02212 NA promoter-TSS (NM_001200003) promoter-TSS (NM_001200003) 87 NM_001200003 26086 Hs.239370 NM_015597 HPRD:17075 GPSM1 AGS3 G-protein signaling modulator 1 protein-coding 13-PTNLD9-TUMOR_peak_11349 chr11 117588526 117589039 + 11.02212 NA intron (NM_020693, intron 3 of 32) intron (NM_020693, intron 3 of 32) 79194 NM_020693 57453 Hs.659513 NM_020693 HPRD:10921 DSCAML1 - Down syndrome cell adhesion molecule like 1 protein-coding 13-PTNLD9-TUMOR_peak_16671 chr14 105399658 105399897 + 11.02212 NA TTS (NM_138790) TTS (NM_138790) 8590 NM_138790 122618 Hs.407101 NM_138790 HPRD:11230 PLD4 C14orf175 phospholipase D family, member 4 protein-coding 13-PTNLD9-TUMOR_peak_34368 chr3 43775366 43775555 + 11.02212 NA Intergenic MIR3|SINE|MIR 43085 NM_016006 51099 Hs.19385 NM_016006 ABHD5 CDS|CGI58|IECN2|NCIE2 abhydrolase domain containing 5 protein-coding 13-PTNLD9-TUMOR_peak_39754 chr4 159082854 159083021 + 11.02212 NA intron (NM_016613, intron 2 of 4) intron (NM_016613, intron 2 of 4) 10781 NM_016613 51313 Hs.567498 NM_016613 HPRD:13194 FAM198B AD036|C4orf18 family with sequence similarity 198, member B protein-coding 13-PTNLD9-TUMOR_peak_33090 chr22 30631712 30632092 + 11.02212 NA Intergenic Intergenic 10938 NM_001257135 3976 Hs.2250 NM_002309 HPRD:08869 LIF CDF|DIA|HILDA|MLPLI leukemia inhibitory factor protein-coding 13-PTNLD9-TUMOR_peak_31267 chr20 45923909 45924242 + 11.01545 NA intron (NM_001281772, intron 6 of 23) AluJb|SINE|Alu -23171 NR_024594 100131496 Hs.662547 NR_024594 ENSG00000267882 LOC100131496 - uncharacterized LOC100131496 ncRNA 13-PTNLD9-TUMOR_peak_4172 chr1 162111541 162111676 + 11.01545 NA intron (NM_001164757, intron 1 of 9) intron (NM_001164757, intron 1 of 9) -15289 NR_039798 100616386 NR_039798 MIR4654 - microRNA 4654 ncRNA 13-PTNLD9-TUMOR_peak_16240 chr14 74211636 74211846 + 11.01545 NA intron (NM_001043318, intron 1 of 11) intron (NM_001043318, intron 1 of 11) -13709 NR_039727 100616158 NR_039727 miRBase:MI0016868 MIR4505 - microRNA 4505 ncRNA 13-PTNLD9-TUMOR_peak_36147 chr3 139667899 139668128 + 11.01488 NA intron (NM_022131, intron 1 of 16) intron (NM_022131, intron 1 of 16) 13986 NM_022131 64084 Hs.158529 NM_022131 CLSTN2 ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma calsyntenin 2 protein-coding 13-PTNLD9-TUMOR_peak_36647 chr3 167814242 167814385 + 11.01488 NA promoter-TSS (NM_014498) promoter-TSS (NM_014498) -896 NM_014498 27333 Hs.143600 NM_014498 HPRD:08429 GOLIM4 GIMPC|GOLPH4|GPP130|P138 golgi integral membrane protein 4 protein-coding 13-PTNLD9-TUMOR_peak_54327 chr9 109683257 109683415 + 11.01395 NA intron (NR_031752, intron 2 of 3) intron (NR_031752, intron 2 of 3) 57958 NM_021224 58499 Hs.370379 NM_021224 HPRD:10333 ZNF462 Zfp462 zinc finger protein 462 protein-coding 13-PTNLD9-TUMOR_peak_37505 chr3 197873043 197873230 + 11.01395 NA Intergenic Intergenic -6101 NM_001145248 728262 Hs.744675 NM_001145248 FAM157A - family with sequence similarity 157, member A protein-coding 13-PTNLD9-TUMOR_peak_16181 chr14 70499258 70499428 + 11.01171 NA TTS (NM_022137) TTS (NM_022137) 47591 NM_182936 6547 Hs.337696 NM_033262 HPRD:09723 SLC8A3 NCX3 solute carrier family 8 (sodium/calcium exchanger), member 3 protein-coding 13-PTNLD9-TUMOR_peak_26658 chr2 39740912 39741077 + 11.01171 NA intron (NR_037875, intron 3 of 5) intron (NR_037875, intron 3 of 5) 76437 NR_037875 728730 Hs.655344 NR_037875 ENSG00000231312 LOC728730 - uncharacterized LOC728730 ncRNA 13-PTNLD9-TUMOR_peak_30341 chr20 4066005 4066467 + 11.01171 NA Intergenic Intergenic -63190 NM_175840 54498 Hs.433337 NM_175839 HPRD:11587 SMOX C20orf16|PAO|PAO-1|PAO1|PAOH|PAOH1|SMO spermine oxidase protein-coding 13-PTNLD9-TUMOR_peak_22858 chr18 28772881 28773179 + 11.01171 NA Intergenic Intergenic -30211 NM_004948 1823 Hs.567260 NM_004948 HPRD:00511 DSC1 CDHF1|DG2/DG3 desmocollin 1 protein-coding 13-PTNLD9-TUMOR_peak_22324 chr17 80239810 80240007 + 11.01171 NA Intergenic Intergenic -8290 NR_110578 1453 Hs.631725 NM_001893 HPRD:02920 CSNK1D ASPS|CKIdelta|FASPS2|HCKID casein kinase 1, delta protein-coding 13-PTNLD9-TUMOR_peak_37268 chr3 193019313 193019532 + 11.01171 NA intron (NM_198505, intron 23 of 29) L2c|LINE|L2 -5611 NR_046758 100874218 Hs.407490 NR_046758 ATP13A5-AS1 - ATP13A5 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_2466 chr1 92335110 92335262 + 11.01171 NA intron (NM_001195684, intron 2 of 17) AluSz|SINE|Alu 16650 NM_003243 7049 Hs.482390 NM_003243 HPRD:02846 TGFBR3 BGCAN|betaglycan transforming growth factor, beta receptor III protein-coding 13-PTNLD9-TUMOR_peak_378 chr1 10659385 10659878 + 11.01171 NA intron (NM_004565, intron 4 of 8) intron (NM_004565, intron 4 of 8) 124628 NM_004565 5195 Hs.149983 NM_004565 HPRD:03477 PEX14 NAPP2|PBD13A|Pex14p|dJ734G22.2 peroxisomal biogenesis factor 14 protein-coding 13-PTNLD9-TUMOR_peak_17777 chr15 81235638 81235800 + 11.01171 NA intron (NM_018689, intron 27 of 28) L2a|LINE|L2 46486 NM_015154 23184 Hs.578450 NM_015154 HPRD:12129 MESDC2 BOCA|MESD mesoderm development candidate 2 protein-coding 13-PTNLD9-TUMOR_peak_21048 chr17 39781014 39781147 + 11.01171 NA promoter-TSS (NM_000422) promoter-TSS (NM_000422) -198 NM_000422 3872 Hs.2785 NM_000422 HPRD:01019 KRT17 K17|PC|PC2|PCHC1 keratin 17 protein-coding 13-PTNLD9-TUMOR_peak_54297 chr9 107715380 107715531 + 11.01171 NA Intergenic Intergenic -24928 NM_005502 19 Hs.659274 NM_005502 HPRD:02501 ABCA1 ABC-1|ABC1|CERP|HDLDT1|TGD ATP-binding cassette, sub-family A (ABC1), member 1 protein-coding 13-PTNLD9-TUMOR_peak_52996 chr9 32524957 32525144 + 11.01171 NA intron (NM_014314, intron 1 of 17) LTR3A|LTR|ERVK 1272 NM_014314 23586 Hs.190622 NM_014314 HPRD:13131 DDX58 RIG-I|RIGI|RLR-1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 58 protein-coding 13-PTNLD9-TUMOR_peak_11612 chr11 128894001 128894182 + 11.01171 NA promoter-TSS (NM_014715) promoter-TSS (NM_014715) -3 NM_014715 9743 Hs.440379 NM_014715 HPRD:12257 ARHGAP32 GC-GAP|GRIT|PX-RICS|RICS|p200RhoGAP|p250GAP Rho GTPase activating protein 32 protein-coding 13-PTNLD9-TUMOR_peak_11937 chr12 6172505 6172619 + 11.01171 NA intron (NM_000552, intron 12 of 51) intron (NM_000552, intron 12 of 51) 61274 NM_000552 7450 Hs.440848 NM_000552 HPRD:01906 VWF F8VWF|VWD von Willebrand factor protein-coding 13-PTNLD9-TUMOR_peak_26904 chr2 49475709 49475935 + 11.01171 NA Intergenic Intergenic -94156 NM_181446 2492 Hs.1428 NM_000145 HPRD:00639 FSHR FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 13-PTNLD9-TUMOR_peak_46388 chr6 157508293 157508826 + 11.01171 NA intron (NM_020732, intron 13 of 19) intron (NM_020732, intron 13 of 19) 236732 NM_018452 729515 Hs.157212 NM_018452 ENSG00000215712 TMEM242 BM033|C6orf35 transmembrane protein 242 protein-coding 13-PTNLD9-TUMOR_peak_7929 chr10 87984898 87985090 + 11.01171 NA intron (NM_017551, intron 2 of 15) intron (NM_017551, intron 2 of 15) 39551 NR_029907 442911 NR_029907 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 13-PTNLD9-TUMOR_peak_51129 chr8 71153206 71153503 + 11.01171 NA intron (NM_006540, intron 2 of 22) intron (NM_006540, intron 2 of 22) 162666 NM_006540 10499 Hs.446678 NM_006540 HPRD:09066 NCOA2 GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75 nuclear receptor coactivator 2 protein-coding 13-PTNLD9-TUMOR_peak_24463 chr19 19652063 19652203 + 11.01171 NA intron (NM_153221, intron 4 of 7) intron (NM_153221, intron 4 of 7) 3059 NM_153221 148113 Hs.279574 NM_153221 HPRD:16714 CILP2 CLIP-2 cartilage intermediate layer protein 2 protein-coding 13-PTNLD9-TUMOR_peak_40631 chr5 36887804 36887952 + 11.01171 NA intron (NM_015384, intron 1 of 45) L2|LINE|L2 11017 NM_133433 25836 Hs.481927 NM_015384 HPRD:10560 NIPBL CDLS|CDLS1|IDN3|IDN3-B|Scc2 Nipped-B homolog (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_46071 chr6 133008518 133008793 + 11.01171 NA intron (NM_004666, intron 5 of 6) HAL1|LINE|L1 26539 NM_004666 8876 Hs.12114 NM_004666 HPRD:04651 VNN1 HDLCQ8|Tiff66 vanin 1 protein-coding 13-PTNLD9-TUMOR_peak_36508 chr3 156805230 156805460 + 11.01093 NA intron (NR_034007, intron 3 of 3) intron (NR_034007, intron 3 of 3) -2325 NR_034008 100498859 Hs.633655 NR_034008 ENSG00000241135 LINC00881 - long intergenic non-protein coding RNA 881 ncRNA 13-PTNLD9-TUMOR_peak_29690 chr2 208575672 208575863 + 11.00984 NA promoter-TSS (NM_152523) promoter-TSS (NM_152523) -497 NM_001142300 151195 Hs.471234 NM_152523 HPRD:08809 CCNYL1 - cyclin Y-like 1 protein-coding 13-PTNLD9-TUMOR_peak_40162 chr5 903213 903441 + 11.00445 NA intron (NM_004237, intron 5 of 12) LTR13|LTR|ERVK 10358 NM_004237 9319 Hs.436187 NM_004237 HPRD:05145 TRIP13 16E1BP thyroid hormone receptor interactor 13 protein-coding 13-PTNLD9-TUMOR_peak_36990 chr3 184259005 184259106 + 11.00445 NA Intergenic Intergenic -20532 NM_004443 2049 Hs.2913 NM_004443 HPRD:03502 EPHB3 ETK2|HEK2|TYRO6 EPH receptor B3 protein-coding 13-PTNLD9-TUMOR_peak_44975 chr6 41499687 41499826 + 11.00445 NA Intergenic Intergenic -14408 NM_001012426 116113 Hs.131436 NM_138457 HPRD:10600 FOXP4 hFKHLA forkhead box P4 protein-coding 13-PTNLD9-TUMOR_peak_13320 chr12 71225495 71225670 + 11.00445 NA intron (NM_002849, intron 2 of 13) intron (NM_002849, intron 2 of 13) -42872 NM_001207015 5801 Hs.506076 NM_002849 HPRD:04169 PTPRR EC-PTP|PCPTP1|PTP-SL|PTPBR7|PTPRQ protein tyrosine phosphatase, receptor type, R protein-coding 13-PTNLD9-TUMOR_peak_2825 chr1 111019852 111020048 + 11.00445 NA Intergenic MIR3|SINE|MIR -3438 NR_003599 643160 Hs.532720 NR_003599 ENSG00000240194 CYMP - chymosin pseudogene pseudo 13-PTNLD9-TUMOR_peak_39533 chr4 145588093 145588208 + 11.00445 NA intron (NM_022475, intron 4 of 12) intron (NM_022475, intron 4 of 12) -20979 NR_037595 646576 Hs.632595 NR_037595 ENSG00000248890 HHIP-AS1 - HHIP antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_41536 chr5 93576426 93576593 + 11.00445 NA intron (NM_001145678, intron 20 of 20) intron (NM_001145678, intron 20 of 20) -129105 NM_001163418 83989 Hs.600086 NM_032042 HPRD:13210 FAM172A C5orf21 family with sequence similarity 172, member A protein-coding 13-PTNLD9-TUMOR_peak_26783 chr2 45902426 45902809 + 11.00445 NA intron (NM_005400, intron 1 of 14) intron (NM_005400, intron 1 of 14) 23574 NM_005400 5581 Hs.580351 NM_005400 HPRD:01500 PRKCE PKCE|nPKC-epsilon protein kinase C, epsilon protein-coding 13-PTNLD9-TUMOR_peak_40073 chr4 189862888 189863145 + 11.00445 NA Intergenic Intergenic 486284 NR_033869 401164 Hs.435756 NR_033869 ENSG00000249378 LINC01060 - long intergenic non-protein coding RNA 1060 ncRNA 13-PTNLD9-TUMOR_peak_6870 chr10 32250745 32250955 + 11.00445 NA Intergenic MER50-int|LTR|ERV1 -33046 NM_001270698 94134 Hs.499264 NM_018287 HPRD:06446 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 13-PTNLD9-TUMOR_peak_49140 chr7 131642535 131642647 + 11.00445 NA Intergenic Intergenic 47612 NR_110836 101928782 Hs.571369 NR_110836 ENSG00000224865 LOC101928782 - uncharacterized LOC101928782 ncRNA 13-PTNLD9-TUMOR_peak_14280 chr12 127256896 127257208 + 11.00445 NA promoter-TSS (NR_033878) promoter-TSS (NR_033878) -244 NR_033878 387895 Hs.534660 NR_033878 LINC00944 - long intergenic non-protein coding RNA 944 ncRNA 13-PTNLD9-TUMOR_peak_27093 chr2 65171669 65171916 + 11.00445 NA Intergenic L2|LINE|L2 -12211 NR_036586 400958 Hs.591565 NR_036586 LOC400958 - uncharacterized LOC400958 ncRNA 13-PTNLD9-TUMOR_peak_750 chr1 26420900 26421081 + 11.00445 NA Intergenic Intergenic -16666 NM_001243532 149420 Hs.468801 NM_152835 HPRD:15110 PDIK1L CLIK1L|STK35L2 PDLIM1 interacting kinase 1 like protein-coding 13-PTNLD9-TUMOR_peak_31796 chr20 61838371 61838622 + 11.00445 NA intron (NM_017798, intron 3 of 4) intron (NM_017798, intron 3 of 4) 9042 NM_017798 54915 Hs.744852 NM_017798 HPRD:11691 YTHDF1 C20orf21 YTH domain family, member 1 protein-coding 13-PTNLD9-TUMOR_peak_48636 chr7 102120538 102120635 + 11.00031 NA Intergenic LTR13|LTR|ERVK -1205 NM_006234 5439 Hs.654952 NM_006234 HPRD:16038 POLR2J POLR2J1|RPB11|RPB11A|RPB11m|hRPB14 polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa protein-coding 13-PTNLD9-TUMOR_peak_28135 chr2 113975987 113976152 + 10.99594 NA 3' UTR (NM_003466, exon 12 of 12) 3' UTR (NM_003466, exon 12 of 12) -17035 NR_047570 654433 Hs.656660 NR_015377 ENSG00000189223 PAX8-AS1 - PAX8 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_19639 chr16 68741440 68741960 + 10.98809 NA Intergenic Intergenic -29495 NM_004360 999 Hs.461086 NM_004360 HPRD:01885 CDH1 Arc-1|CD324|CDHE|ECAD|LCAM|UVO cadherin 1, type 1, E-cadherin (epithelial) protein-coding 13-PTNLD9-TUMOR_peak_841 chr1 28286360 28286747 + 10.98809 NA promoter-TSS (NM_018053) promoter-TSS (NM_018053) 49 NM_018053 55113 Hs.55024 NM_018053 HPRD:07661 XKR8 XRG8|hXkr8 XK, Kell blood group complex subunit-related family, member 8 protein-coding 13-PTNLD9-TUMOR_peak_31386 chr20 48391920 48392174 + 10.98809 NA Intergenic Intergenic -37203 NR_048538 23315 Hs.444202 NM_015266 HPRD:18062 SLC9A8 NHE-8|NHE8 solute carrier family 9, subfamily A (NHE8, cation proton antiporter 8), member 8 protein-coding 13-PTNLD9-TUMOR_peak_52477 chr8 145014405 145014562 + 10.98450 NA promoter-TSS (NM_201384) promoter-TSS (NM_201384) -725 NM_201384 5339 Hs.434248 NM_000445 HPRD:03180 PLEC EBS1|EBSO|HD1|LGMD2Q|PCN|PLEC1|PLEC1b|PLTN plectin protein-coding 13-PTNLD9-TUMOR_peak_48452 chr7 99005722 99005906 + 10.98422 NA promoter-TSS (NM_003910) promoter-TSS (NM_003910) 491 NM_014891 11333 Hs.632296 NM_014891 HPRD:06149 PDAP1 HASPP28|PAP|PAP1 PDGFA associated protein 1 protein-coding 13-PTNLD9-TUMOR_peak_4681 chr1 182991483 182991652 + 10.98422 NA Intergenic Intergenic -1028 NM_002293 3915 Hs.609663 NM_002293 HPRD:01030 LAMC1 LAMB2 laminin, gamma 1 (formerly LAMB2) protein-coding 13-PTNLD9-TUMOR_peak_43812 chr6 12290159 12290696 + 10.98340 NA promoter-TSS (NM_001955) promoter-TSS (NM_001955) -102 NM_001168319 1906 Hs.511899 NM_001955 HPRD:07030 EDN1 ARCND3|ET1|HDLCQ7|PPET1|QME endothelin 1 protein-coding 13-PTNLD9-TUMOR_peak_1628 chr1 46908080 46908270 + 10.97728 NA intron (NR_045483, intron 7 of 8) MIRb|SINE|MIR 7201 NR_121680 101929651 Hs.638707 NR_121680 ENSG00000224863 LINC01398 - long intergenic non-protein coding RNA 1398 ncRNA 13-PTNLD9-TUMOR_peak_7595 chr10 71120585 71120761 + 10.97728 NA intron (NM_033497, intron 6 of 20) intron (NM_033497, intron 6 of 20) 42070 NM_000188 3098 Hs.370365 NM_000188 HPRD:00809 HK1 HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1 hexokinase 1 protein-coding 13-PTNLD9-TUMOR_peak_43008 chr5 171615720 171615893 + 10.97728 NA promoter-TSS (NM_005990) promoter-TSS (NM_005990) -460 NM_005990 6793 Hs.744005 NM_005990 HPRD:06796 STK10 LOK|PRO2729 serine/threonine kinase 10 protein-coding 13-PTNLD9-TUMOR_peak_46717 chr7 2491166 2491347 + 10.97728 NA Intergenic Intergenic 13858 NR_108066 101927181 Hs.288853 NR_108066 LOC101927181 - uncharacterized LOC101927181 ncRNA 13-PTNLD9-TUMOR_peak_49889 chr7 158791422 158791551 + 10.97728 NA Intergenic Intergenic -9559 NR_024394 154822 Hs.544783 NM_198345 ENSG00000231419 LINC00689 - long intergenic non-protein coding RNA 689 ncRNA 13-PTNLD9-TUMOR_peak_38749 chr4 84006236 84006405 + 10.97728 NA Intergenic LTR13A|LTR|ERVK 24692 NM_001130716 51316 Hs.546392 NM_016619 HPRD:06335 PLAC8 C15|DGIC|onzin placenta-specific 8 protein-coding 13-PTNLD9-TUMOR_peak_30409 chr20 10415725 10416102 + 10.97728 NA promoter-TSS (NM_001009608) promoter-TSS (NM_001009608) -38 NM_001009608 128710 Hs.668782 NM_001009608 HPRD:12516 SLX4IP C20orf94|bA204H22.1|bA254M13.1|dJ1099D15.3 SLX4 interacting protein protein-coding 13-PTNLD9-TUMOR_peak_44184 chr6 25962653 25963099 + 10.97728 NA promoter-TSS (NM_006355) promoter-TSS (NM_006355) -41 NM_006355 10475 Hs.584851 NM_006355 HPRD:15555 TRIM38 RNF15|RORET tripartite motif containing 38 protein-coding 13-PTNLD9-TUMOR_peak_24371 chr19 18132123 18132566 + 10.97728 NA Intergenic Intergenic 13367 NM_001286826 27106 Hs.515249 NM_015683 HPRD:12492 ARRDC2 CLONE24945 arrestin domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_1574 chr1 45484423 45484551 + 10.97728 NA exon (NM_020883, exon 14 of 14) exon (NM_020883, exon 14 of 14) 6682 NR_036510 7389 Hs.78601 NM_000374 HPRD:01441 UROD PCT|UPD uroporphyrinogen decarboxylase protein-coding 13-PTNLD9-TUMOR_peak_52816 chr9 16722118 16722270 + 10.97728 NA intron (NM_017637, intron 3 of 6) intron (NM_017637, intron 3 of 6) 148592 NM_017637 54796 Hs.656581 NM_017637 HPRD:12274 BNC2 BSN2 basonuclin 2 protein-coding 13-PTNLD9-TUMOR_peak_14166 chr12 123431454 123431665 + 10.97728 NA intron (NM_001243013, intron 5 of 10) intron (NM_001243013, intron 5 of 10) 19497 NM_203444 23457 Hs.511951 NM_019624 HPRD:09262 ABCB9 EST122234|TAPL ATP-binding cassette, sub-family B (MDR/TAP), member 9 protein-coding 13-PTNLD9-TUMOR_peak_24999 chr19 41152117 41152390 + 10.97728 NA Intergenic Intergenic 43774 NM_001289980 9253 Hs.326953 NM_004756 NUMBL CAG3A|CTG3a|NBL|NUMB-R|NUMBLIKE|NUMBR|TNRC23 numb homolog (Drosophila)-like protein-coding 13-PTNLD9-TUMOR_peak_34083 chr3 24171183 24171319 + 10.97728 NA intron (NM_001128176, intron 9 of 10) intron (NM_001128176, intron 9 of 10) -21564 NR_121667 101927854 Hs.570625 NR_121667 LOC101927854 - uncharacterized LOC101927854 ncRNA 13-PTNLD9-TUMOR_peak_10843 chr11 86383106 86383522 + 10.97728 NA promoter-TSS (NM_001014811) promoter-TSS (NM_001014811) -74 NM_001014811 10873 Hs.199743 NM_006680 HPRD:06862 ME3 NADP-ME malic enzyme 3, NADP(+)-dependent, mitochondrial protein-coding 13-PTNLD9-TUMOR_peak_55477 chrX 1935600 1935822 + 10.97537 NA Intergenic Intergenic 201685 NM_001171039 438 Hs.522572 NM_004043 HPRD:02058 ASMT ASMTY|HIOMT|HIOMTY acetylserotonin O-methyltransferase protein-coding 13-PTNLD9-TUMOR_peak_48754 chr7 106209075 106209509 + 10.97537 NA Intergenic Intergenic 92342 NM_175884 168455 Hs.29692 NM_175884 HPRD:08202 CCDC71L C7orf74 coiled-coil domain containing 71-like protein-coding 13-PTNLD9-TUMOR_peak_31986 chr21 19045697 19045861 + 10.97537 NA Intergenic Intergenic -60511 NM_001130914 10950 Hs.473420 NM_006806 HPRD:10415 BTG3 ANA|TOB5|TOB55|TOFA BTG family, member 3 protein-coding 13-PTNLD9-TUMOR_peak_11331 chr11 117008456 117008677 + 10.97537 NA Intergenic Intergenic -6434 NR_110268 5049 Hs.728488 NM_002572 HPRD:03940 PAFAH1B2 HEL-S-303 platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa) protein-coding 13-PTNLD9-TUMOR_peak_27439 chr2 85804565 85804755 + 10.97537 NA promoter-TSS (NM_003761) promoter-TSS (NM_003761) 46 NM_003761 8673 Hs.714302 NM_003761 HPRD:04415 VAMP8 EDB|VAMP-8 vesicle-associated membrane protein 8 protein-coding 13-PTNLD9-TUMOR_peak_33619 chr3 6811631 6811772 + 10.97537 NA intron (NR_110125, intron 2 of 3) L1PA3|LINE|L1 35435 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 13-PTNLD9-TUMOR_peak_44546 chr6 31546394 31546526 + 10.97537 NA TTS (NM_000594).3 TTS (NM_000594).3 3116 NM_000594 7124 Hs.241570 NM_000594 HPRD:01855 TNF DIF|TNF-alpha|TNFA|TNFSF2 tumor necrosis factor protein-coding 13-PTNLD9-TUMOR_peak_56783 chrY 1885600 1885822 + 10.97537 NA Intergenic Intergenic 201685 NM_001171039 438 Hs.522572 NM_004043 HPRD:02058 ASMT ASMTY|HIOMT|HIOMTY acetylserotonin O-methyltransferase protein-coding 13-PTNLD9-TUMOR_peak_53704 chr9 79558744 79559432 + 10.97537 NA Intergenic L2|LINE|L2 -38085 NM_015225 158471 Hs.262857 NM_015225 HPRD:12970 PRUNE2 A214N16.3|BMCC1|BNIPXL|C9orf65|KIAA0367|bA214N16.3 prune homolog 2 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_23991 chr19 11264704 11264947 + 10.96851 NA intron (NM_182513, intron 1 of 4) L1MB3|LINE|L1 1659 NM_182513 147841 Hs.381225 NM_182513 SPC24 SPBC24 SPC24, NDC80 kinetochore complex component protein-coding 13-PTNLD9-TUMOR_peak_42670 chr5 150463037 150463157 + 10.95711 NA intron (NM_001252390, intron 1 of 17) intron (NM_001252390, intron 1 of 17) -2448 NM_001258454 10318 Hs.355141 NM_006058 HPRD:09216 TNIP1 ABIN-1|NAF1|VAN|nip40-1 TNFAIP3 interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_33382 chr22 43093623 43093846 + 10.95577 NA intron (NM_017436, intron 1 of 2) intron (NM_017436, intron 1 of 2) 23142 NM_017436 53947 Hs.105956 NM_017436 HPRD:06390 A4GALT A14GALT|A4GALT1|Gb3S|P(k)|P1|P1PK|PK alpha 1,4-galactosyltransferase protein-coding 13-PTNLD9-TUMOR_peak_27182 chr2 69902723 69902898 + 10.95577 NA Intergenic L1MB3|LINE|L1 -31833 NM_014911 22848 Hs.468878 NM_014911 AAK1 - AP2 associated kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_38098 chr4 23936626 23936805 + 10.95577 NA Intergenic Intergenic -45015 NM_013261 10891 Hs.527078 NM_013261 HPRD:05155 PPARGC1A LEM6|PGC-1(alpha)|PGC-1v|PGC1|PGC1A|PPARGC1 peroxisome proliferator-activated receptor gamma, coactivator 1 alpha protein-coding 13-PTNLD9-TUMOR_peak_27800 chr2 99493455 99493566 + 10.95577 NA intron (NM_207362, intron 1 of 9) MER117|DNA|hAT-Charlie 59174 NM_207362 343990 Hs.469398 NM_207362 HPRD:14620 KIAA1211L C2orf55 KIAA1211-like protein-coding 13-PTNLD9-TUMOR_peak_7619 chr10 71702393 71702677 + 10.95577 NA intron (NM_080798, intron 29 of 34) MIR|SINE|MIR -109822 NM_018649 55506 Hs.499953 NM_018649 HPRD:13625 H2AFY2 macroH2A2 H2A histone family, member Y2 protein-coding 13-PTNLD9-TUMOR_peak_37178 chr3 189339863 189340016 + 10.95577 NA Intergenic Intergenic -9277 NM_001114978 8626 Hs.137569 NM_003722 HPRD:04469 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 13-PTNLD9-TUMOR_peak_53542 chr9 71130380 71130575 + 10.95577 NA intron (NM_021965, intron 10 of 10) intron (NM_021965, intron 10 of 10) 25306 NM_153237 169693 Hs.663056 NM_153237 HPRD:18569 TMEM252 C9orf71 transmembrane protein 252 protein-coding 13-PTNLD9-TUMOR_peak_53599 chr9 73283780 73284007 + 10.95577 NA intron (NM_001007471, intron 9 of 24) intron (NM_001007471, intron 9 of 24) 141107 NR_029621 406987 NR_029621 MIR204 MIRN204|miRNA204 microRNA 204 ncRNA 13-PTNLD9-TUMOR_peak_41790 chr5 114603502 114603614 + 10.95577 NA 3' UTR (NM_152549, exon 10 of 10) 3' UTR (NM_152549, exon 10 of 10) -4989 NM_005023 5229 Hs.254006 NM_005023 HPRD:03612 PGGT1B BGGI|GGTI protein geranylgeranyltransferase type I, beta subunit protein-coding 13-PTNLD9-TUMOR_peak_33731 chr3 10247420 10247594 + 10.95577 NA intron (NM_001570, intron 3 of 12) MER113A|DNA|hAT-Charlie 40944 NM_001570 3656 Hs.449207 NM_001570 HPRD:04491 IRAK2 IRAK-2 interleukin-1 receptor-associated kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_15078 chr13 108456520 108456813 + 10.95577 NA intron (NR_046848, intron 1 of 1) L2b|LINE|L2 31140 NR_046848 100874375 Hs.653972 NR_046848 FAM155A-IT1 - FAM155A intronic transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_29808 chr2 218258353 218258762 + 10.95577 NA intron (NR_026597, intron 8 of 12) intron (NR_026597, intron 8 of 12) 362759 NR_026597 729582 Hs.572788 NR_026597 ENSG00000231672 DIRC3 - disrupted in renal carcinoma 3 ncRNA 13-PTNLD9-TUMOR_peak_33092 chr22 30651919 30652206 + 10.95577 NA Intergenic Intergenic -9222 NM_002309 3976 Hs.2250 NM_002309 HPRD:08869 LIF CDF|DIA|HILDA|MLPLI leukemia inhibitory factor protein-coding 13-PTNLD9-TUMOR_peak_8046 chr10 96122716 96122894 + 10.95577 NA promoter-TSS (NM_022451) promoter-TSS (NM_022451) -122 NM_022451 64318 Hs.74899 NM_022451 HPRD:12562 NOC3L AD24|C10orf117|FAD24 nucleolar complex associated 3 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_40473 chr5 21152806 21153136 + 10.95577 NA Intergenic Intergenic -306618 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - glucuronidase, beta pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_28760 chr2 153370317 153370441 + 10.95577 NA intron (NM_052905, intron 1 of 25) intron (NM_052905, intron 1 of 25) 178628 NM_052905 114793 Hs.654630 NM_052905 HPRD:13545 FMNL2 FHOD2 formin-like 2 protein-coding 13-PTNLD9-TUMOR_peak_12275 chr12 19842851 19842986 + 10.95577 NA Intergenic Intergenic 249403 NM_001267043 121536 Hs.126497 NM_153207 AEBP2 - AE binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_39477 chr4 141847926 141848102 + 10.95577 NA intron (NM_020724, intron 4 of 6) intron (NM_020724, intron 4 of 6) -170543 NM_015130 23158 Hs.480819 NM_015130 HPRD:11115 TBC1D9 MDR1 TBC1 domain family, member 9 (with GRAM domain) protein-coding 13-PTNLD9-TUMOR_peak_25513 chr19 51925310 51925475 + 10.95577 NA Intergenic CpG -4335 NM_001171157 89790 Hs.284813 NM_033130 HPRD:07307 SIGLEC10 PRO940|SIGLEC-10|SLG2 sialic acid binding Ig-like lectin 10 protein-coding 13-PTNLD9-TUMOR_peak_10967 chr11 95220715 95220921 + 10.95577 NA Intergenic Intergenic -255113 NM_001271594 143686 Hs.120633 NM_144665 HPRD:09682 SESN3 SEST3 sestrin 3 protein-coding 13-PTNLD9-TUMOR_peak_5744 chr1 228966919 228967116 + 10.95577 NA Intergenic Intergenic 96193 NM_021205 58480 Hs.647774 NM_021205 HPRD:06965 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 13-PTNLD9-TUMOR_peak_17945 chr15 89645111 89645416 + 10.95577 NA intron (NM_007011, intron 2 of 14) intron (NM_007011, intron 2 of 14) 13882 NM_152924 11057 Hs.122337 NM_007011 HPRD:09791 ABHD2 HS1-2|LABH2|PHPS1-2 abhydrolase domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_55565 chrX 14507713 14507861 + 10.95577 NA Intergenic MER61A|LTR|ERV1 -39633 NM_001118885 2742 Hs.2700 NM_002063 HPRD:02379 GLRA2 GLR glycine receptor, alpha 2 protein-coding 13-PTNLD9-TUMOR_peak_14512 chr13 30493060 30493206 + 10.95577 NA non-coding (NR_047501, exon 2 of 2) non-coding (NR_047501, exon 2 of 2) 7655 NR_047501 100861573 Hs.585619 NR_047501 ENSG00000224405 LINC00572 - long intergenic non-protein coding RNA 572 ncRNA 13-PTNLD9-TUMOR_peak_24700 chr19 34262525 34262704 + 10.95577 NA intron (NM_022467, intron 3 of 3) intron (NM_022467, intron 3 of 3) -25137 NM_001129994 79047 Hs.221873 NM_024076 HPRD:13765 KCTD15 - potassium channel tetramerization domain containing 15 protein-coding 13-PTNLD9-TUMOR_peak_6527 chr10 13656863 13657192 + 10.95577 NA intron (NM_003675, intron 8 of 9) intron (NM_003675, intron 8 of 9) 28088 NM_003675 8559 Hs.729158 NM_003675 HPRD:05407 PRPF18 PRP18|hPrp18 pre-mRNA processing factor 18 protein-coding 13-PTNLD9-TUMOR_peak_1393 chr1 42296506 42296837 + 10.95577 NA intron (NM_024503, intron 1 of 8) L2a|LINE|L2 87707 NM_024503 59269 Hs.403972 NM_024503 HPRD:09442 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 13-PTNLD9-TUMOR_peak_42360 chr5 140767432 140767724 + 10.95474 NA exon (NM_032098, exon 1 of 1) exon (NM_032098, exon 1 of 1) 126 NM_003736 8641 Hs.368160 NM_003736 HPRD:07215 PCDHGB4 CDH20|FIB2|PCDH-GAMMA-B4 protocadherin gamma subfamily B, 4 protein-coding 13-PTNLD9-TUMOR_peak_34493 chr3 48443779 48443887 + 10.95474 NA Intergenic Intergenic 27039 NM_002673 5364 Hs.476209 NM_002673 HPRD:03032 PLXNB1 PLEXIN-B1|PLXN5|SEP plexin B1 protein-coding 13-PTNLD9-TUMOR_peak_8251 chr10 105128325 105128532 + 10.95474 NA intron (NM_006951, intron 1 of 10) CpG 704 NM_006951 6877 Hs.96103 NM_006951 HPRD:11876 TAF5 TAF2D|TAFII100 TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 100kDa protein-coding 13-PTNLD9-TUMOR_peak_32091 chr21 30754452 30754628 + 10.95474 NA Intergenic Intergenic 9719 NR_046564 100874322 Hs.326404 NR_046564 BACH1-IT2 - BACH1 intronic transcript 2 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_46438 chr6 159309231 159309508 + 10.95474 NA promoter-TSS (NM_001195032) promoter-TSS (NM_001195032) -250 NM_001195032 100130967 Hs.32804 NM_001195032 C6orf99 yR211F11.1 chromosome 6 open reading frame 99 protein-coding 13-PTNLD9-TUMOR_peak_27861 chr2 102354051 102354193 + 10.95474 NA intron (NM_145686, intron 2 of 30) intron (NM_145686, intron 2 of 30) 39584 NM_145687 9448 Hs.701013 NM_004834 HPRD:05235 MAP4K4 FLH21957|HEL-S-31|HGK|MEKKK4|NIK mitogen-activated protein kinase kinase kinase kinase 4 protein-coding 13-PTNLD9-TUMOR_peak_26817 chr2 46720656 46720877 + 10.95474 NA Intergenic Intergenic 14062 NM_001145051 388946 Hs.733348 NM_001145051 ENSG00000187600 TMEM247 - transmembrane protein 247 protein-coding 13-PTNLD9-TUMOR_peak_4478 chr1 175190930 175191067 + 10.95474 NA Intergenic Intergenic -28769 NM_001162894 9674 Hs.518138 NM_014656 HPRD:13776 KIAA0040 - KIAA0040 protein-coding 13-PTNLD9-TUMOR_peak_21104 chr17 40896948 40897194 + 10.95474 NA promoter-TSS (NM_001991) promoter-TSS (NM_001991) 0 NM_001991 2145 Hs.194669 NM_001991 HPRD:03397 EZH1 KMT6B enhancer of zeste 1 polycomb repressive complex 2 subunit protein-coding 13-PTNLD9-TUMOR_peak_6899 chr10 33425875 33426036 + 10.95474 NA Intergenic MIRb|SINE|MIR -178662 NM_002211 3688 Hs.643813 NM_002211 HPRD:00628 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) protein-coding 13-PTNLD9-TUMOR_peak_327 chr1 9363235 9363361 + 10.95474 NA intron (NM_025106, intron 1 of 2) ERVL-int|LTR|ERVL 10357 NM_025106 80176 Hs.8261 NM_025106 HPRD:18106 SPSB1 SSB-1|SSB1 splA/ryanodine receptor domain and SOCS box containing 1 protein-coding 13-PTNLD9-TUMOR_peak_33673 chr3 9184138 9184343 + 10.95474 NA intron (NM_001033117, intron 1 of 21) intron (NM_001033117, intron 1 of 21) -49937 NR_121664 101927416 Hs.475364 NR_121663 LOC101927416 - uncharacterized LOC101927416 ncRNA 13-PTNLD9-TUMOR_peak_415 chr1 11376841 11377174 + 10.95474 NA Intergenic Intergenic 43752 NM_013319 29914 Hs.522933 NM_013319 HPRD:15487 UBIAD1 SCCD|TERE1 UbiA prenyltransferase domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_21554 chr17 54768476 54768646 + 10.95474 NA Intergenic Intergenic 97501 NM_005450 9241 Hs.248201 NM_005450 HPRD:04291 NOG SYM1|SYNS1 noggin protein-coding 13-PTNLD9-TUMOR_peak_2256 chr1 79115445 79115589 + 10.95474 NA promoter-TSS (NM_006417) promoter-TSS (NM_006417) 40 NM_006417 10561 Hs.82316 NM_006417 HPRD:09998 IFI44 MTAP44|TLDC5|p44 interferon-induced protein 44 protein-coding 13-PTNLD9-TUMOR_peak_52282 chr8 139964910 139965392 + 10.95144 NA Intergenic Intergenic -38915 NM_152888 169044 Hs.117169 NM_152888 HPRD:09885 COL22A1 - collagen, type XXII, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_35364 chr3 111847818 111848007 + 10.95144 NA intron (NM_001190259, intron 2 of 5) intron (NM_001190259, intron 2 of 5) 4240 NM_001190260 257144 Hs.49614 NM_152785 HPRD:09695 GCSAM GCAT2|GCET2|HGAL germinal center-associated, signaling and motility protein-coding 13-PTNLD9-TUMOR_peak_54178 chr9 100881442 100881578 + 10.95144 NA 5' UTR (NM_014788, exon 1 of 6) 5' UTR (NM_014788, exon 1 of 6) 125 NM_014788 9830 Hs.575631 NM_014788 HPRD:05948 TRIM14 - tripartite motif containing 14 protein-coding 13-PTNLD9-TUMOR_peak_15856 chr14 56269931 56270060 + 10.95144 NA Intergenic MIRc|SINE|MIR -6603 NR_026797 645687 Hs.569345 NR_026796 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 13-PTNLD9-TUMOR_peak_22458 chr18 3247686 3247891 + 10.94580 NA 5' UTR (NM_006471, exon 1 of 4) 5' UTR (NM_006471, exon 1 of 4) 260 NM_006471 10627 Hs.190086 NM_006471 HPRD:14735 MYL12A HEL-S-24|MLCB|MRCL3|MRLC3|MYL2B myosin, light chain 12A, regulatory, non-sarcomeric protein-coding 13-PTNLD9-TUMOR_peak_12796 chr12 52419574 52419928 + 10.94580 NA intron (NM_001202233, intron 1 of 7) intron (NM_001202233, intron 1 of 7) 3135 NM_001202233 3164 Hs.524430 NM_002135 HPRD:00744 NR4A1 GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3 nuclear receptor subfamily 4, group A, member 1 protein-coding 13-PTNLD9-TUMOR_peak_46801 chr7 5733246 5733521 + 10.94580 NA intron (NM_207111, intron 13 of 16) intron (NM_207111, intron 13 of 16) -13291 NR_046834 100874342 Hs.665728 NR_046834 RNF216-IT1 - RNF216 intronic transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_1949 chr1 59321358 59321609 + 10.94580 NA intron (NR_108106, intron 1 of 1) intron (NR_108106, intron 1 of 1) 70660 NR_034015 100131060 Hs.680604 NR_034014 ENSG00000234807 LINC01135 - long intergenic non-protein coding RNA 1135 ncRNA 13-PTNLD9-TUMOR_peak_14144 chr12 122906571 122906810 + 10.94343 NA intron (NM_198240, intron 1 of 23) CpG 426 NM_001247997 6249 Hs.524809 NM_002956 HPRD:01568 CLIP1 CLIP|CLIP-170|CLIP170|CYLN1|RSN CAP-GLY domain containing linker protein 1 protein-coding 13-PTNLD9-TUMOR_peak_12643 chr12 46662689 46662955 + 10.94343 NA 5' UTR (NM_030674, exon 1 of 17) 5' UTR (NM_030674, exon 1 of 17) 386 NM_001278387 81539 Hs.533770 NM_030674 HPRD:12245 SLC38A1 ATA1|NAT2|SAT1|SNAT1 solute carrier family 38, member 1 protein-coding 13-PTNLD9-TUMOR_peak_49615 chr7 150037292 150037643 + 10.94343 NA intron (NM_002889, intron 2 of 5) CpG 1296 NM_002889 5919 Hs.647064 NM_002889 HPRD:03577 RARRES2 HP10433|TIG2 retinoic acid receptor responder (tazarotene induced) 2 protein-coding 13-PTNLD9-TUMOR_peak_14002 chr12 119621013 119621246 + 10.94343 NA intron (NM_014365, intron 1 of 2) intron (NM_014365, intron 1 of 2) 4534 NM_014365 26353 Hs.400095 NM_014365 HPRD:06420 HSPB8 CMT2L|DHMN2|E2IG1|H11|HMN2|HMN2A|HSP22 heat shock 22kDa protein 8 protein-coding 13-PTNLD9-TUMOR_peak_55888 chrX 53123091 53123609 + 10.93479 NA promoter-TSS (NR_110456) promoter-TSS (NR_110456) 11 NR_110456 102723508 Hs.633244 NR_110456 KANTR LINC01155|Spasm KDM5C adjacent non-coding transcript ncRNA 13-PTNLD9-TUMOR_peak_19312 chr16 50508126 50508423 + 10.93479 NA Intergenic L2a|LINE|L2 -73967 NM_033119 85407 Hs.187578 NM_033119 NKD1 Naked1 naked cuticle homolog 1 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_37701 chr4 4056832 4057088 + 10.93479 NA Intergenic Intergenic -99812 NR_024253 348926 Hs.591720 NR_024253 FAM86EP - family with sequence similarity 86, member A pseudogene pseudo 13-PTNLD9-TUMOR_peak_32472 chr21 44614176 44614344 + 10.93479 NA Intergenic Intergenic 25142 NM_000394 1409 Hs.184085 NM_000394 HPRD:00427 CRYAA CRYA1|CTRCT9|HSPB4 crystallin, alpha A protein-coding 13-PTNLD9-TUMOR_peak_37319 chr3 194219061 194219278 + 10.93479 NA Intergenic AluJb|SINE|Alu 11300 NR_033929 401106 Hs.407087 NR_033929 LINC00884 - long intergenic non-protein coding RNA 884 ncRNA 13-PTNLD9-TUMOR_peak_17996 chr15 92410925 92411196 + 10.93479 NA intron (NM_013272, intron 1 of 9) intron (NM_013272, intron 1 of 9) 14122 NM_013272 28232 Hs.311187 NM_013272 HPRD:07502 SLCO3A1 OATP-D|OATP3A1|OATPD|SLC21A11 solute carrier organic anion transporter family, member 3A1 protein-coding 13-PTNLD9-TUMOR_peak_35606 chr3 123537770 123537941 + 10.93479 NA intron (NM_053025, intron 3 of 33) MIRb|SINE|MIR 65294 NM_053026 4638 Hs.477375 NM_005965 HPRD:02952 MYLK AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK myosin light chain kinase protein-coding 13-PTNLD9-TUMOR_peak_25561 chr19 53165988 53166195 + 10.93479 NA intron (NM_001277949, intron 1 of 4) intron (NM_001277949, intron 1 of 4) -24447 NM_001277952 55769 Hs.467210 NM_018300 HPRD:01935 ZNF83 HPF1|ZNF816B zinc finger protein 83 protein-coding 13-PTNLD9-TUMOR_peak_43942 chr6 16333876 16334108 + 10.93479 NA intron (NM_001128164, intron 6 of 7) intron (NM_001128164, intron 6 of 7) 95181 NM_006877 2766 Hs.484741 NM_006877 HPRD:00754 GMPR GMPR1 guanosine monophosphate reductase protein-coding 13-PTNLD9-TUMOR_peak_34914 chr3 69341407 69341551 + 10.93348 NA intron (NM_015123, intron 4 of 22) L2c|LINE|L2 93976 NM_015123 23150 Hs.371681 NM_015123 ENSG00000114541 FRMD4B 6030440G05Rik|GRSP1 FERM domain containing 4B protein-coding 13-PTNLD9-TUMOR_peak_26777 chr2 45503042 45503239 + 10.93348 NA Intergenic Intergenic -21060 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 13-PTNLD9-TUMOR_peak_12936 chr12 54773510 54773657 + 10.93348 NA intron (NM_001290004, intron 3 of 8) intron (NM_001290004, intron 3 of 8) 4931 NM_001290001 25946 Hs.505653 NM_015481 HPRD:16448 ZNF385A HZF|RZF|ZFP385|ZNF385 zinc finger protein 385A protein-coding 13-PTNLD9-TUMOR_peak_21047 chr17 39775246 39775421 + 10.93348 NA TTS (NM_000422) TTS (NM_000422) 5549 NM_000422 3872 Hs.2785 NM_000422 HPRD:01019 KRT17 K17|PC|PC2|PCHC1 keratin 17 protein-coding 13-PTNLD9-TUMOR_peak_33740 chr3 10501914 10502146 + 10.93348 NA intron (NM_001001331, intron 1 of 22) intron (NM_001001331, intron 1 of 22) 45238 NM_001001331 491 Hs.268942 NM_001683 HPRD:00160 ATP2B2 PMCA2|PMCA2a|PMCA2i ATPase, Ca++ transporting, plasma membrane 2 protein-coding 13-PTNLD9-TUMOR_peak_36519 chr3 156966441 156966737 + 10.93348 NA Intergenic L4|LINE|RTE -88107 NM_020307 57018 Hs.4859 NM_020307 CCNL1 ANIA6A|PRO1073|ania-6a cyclin L1 protein-coding 13-PTNLD9-TUMOR_peak_46219 chr6 146285494 146285700 + 10.93348 NA promoter-TSS (NM_173082) promoter-TSS (NM_173082) -364 NM_173082 257218 Hs.723297 NM_173082 HPRD:10476 SHPRH bA545I5.2 SNF2 histone linker PHD RING helicase, E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_22132 chr17 75883709 75883944 + 10.93348 NA Intergenic CpG -3657 NR_028337 400624 Hs.514521 NM_001001685 FLJ45079 - FLJ45079 protein ncRNA 13-PTNLD9-TUMOR_peak_695 chr1 24349225 24349458 + 10.93348 NA Intergenic Intergenic -42388 NM_006625 10772 Hs.3530 NM_006625 HPRD:05562 SRSF10 FUSIP1|FUSIP2|NSSR|PPP1R149|SFRS13|SFRS13A|SRp38|SRrp40|TASR|TASR1|TASR2 serine/arginine-rich splicing factor 10 protein-coding 13-PTNLD9-TUMOR_peak_44708 chr6 33739221 33739682 + 10.93348 NA 3' UTR (NM_001143944, exon 8 of 8) 3' UTR (NM_001143944, exon 8 of 8) 15268 NM_001143944 221496 Hs.444845 NM_181336 HPRD:13984 LEMD2 NET25|dJ482C21.1 LEM domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_23234 chr18 52626648 52626843 + 10.93348 NA promoter-TSS (NM_025214) promoter-TSS (NM_025214) -6 NM_025214 80323 Hs.120790 NM_025214 HPRD:18034 CCDC68 SE57-1 coiled-coil domain containing 68 protein-coding 13-PTNLD9-TUMOR_peak_50859 chr8 48079046 48079208 + 10.93348 NA Intergenic Intergenic -21803 NR_037168 100287846 Hs.21550 NR_037168 LOC100287846 - patched 1 pseudogene pseudo 13-PTNLD9-TUMOR_peak_17125 chr15 42187049 42187231 + 10.93348 NA promoter-TSS (NM_016642) promoter-TSS (NM_016642) -865 NM_016642 51332 Hs.709819 NM_016642 HPRD:10438 SPTBN5 BSPECV|HUBSPECV|HUSPECV spectrin, beta, non-erythrocytic 5 protein-coding 13-PTNLD9-TUMOR_peak_20204 chr17 836657 837013 + 10.93348 NA intron (NM_022463, intron 1 of 7) intron (NM_022463, intron 1 of 7) 46163 NM_022463 64359 Hs.527989 NM_022463 HPRD:14858 NXN NRX|TRG-4 nucleoredoxin protein-coding 13-PTNLD9-TUMOR_peak_32462 chr21 44466136 44466433 + 10.92568 NA Intergenic Intergenic 29756 NM_000071 875 Hs.533013 NM_000071 HPRD:01994 CBS HIP4 cystathionine-beta-synthase protein-coding 13-PTNLD9-TUMOR_peak_15920 chr14 59828010 59828196 + 10.92568 NA intron (NM_001270520, intron 22 of 24) intron (NM_001270520, intron 22 of 24) 97944 NM_014992 23002 Hs.19156 NM_014992 HPRD:09433 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 13-PTNLD9-TUMOR_peak_43198 chr5 176874819 176875327 + 10.92568 NA promoter-TSS (NM_001174102) promoter-TSS (NM_001174102) -128 NR_038915 340037 Hs.570879 NR_038915 PRR7-AS1 - PRR7 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_24364 chr19 18044616 18044835 + 10.92217 NA intron (NM_001136203, intron 1 of 4) L2b|LINE|L2 901 NM_001136203 115098 Hs.100043 NM_138442 HPRD:14008 CCDC124 - coiled-coil domain containing 124 protein-coding 13-PTNLD9-TUMOR_peak_8858 chr11 3498150 3498384 + 10.91416 NA Intergenic HERVE-int|LTR|ERV1 -85122 NR_044999 10821 Hs.637689 NR_044999 ENSG00000189398 OR7E12P HG1058|OR11-3|OR7E58P|OR7E79P|OR7E81P|OST021 olfactory receptor, family 7, subfamily E, member 12 pseudogene pseudo 13-PTNLD9-TUMOR_peak_18278 chr16 2908524 2908812 + 10.91416 NA promoter-TSS (NM_022119) promoter-TSS (NM_022119) -497 NM_022119 64063 Hs.459709 NM_022119 HPRD:08336 PRSS22 BSSP-4|hBSSP-4 protease, serine, 22 protein-coding 13-PTNLD9-TUMOR_peak_48241 chr7 87974696 87974847 + 10.91416 NA Intergenic Intergenic -38543 NM_001205315 79689 Hs.521008 NM_024636 HPRD:11637 STEAP4 STAMP2|TIARP|TNFAIP9 STEAP family member 4 protein-coding 13-PTNLD9-TUMOR_peak_24159 chr19 14097182 14097577 + 10.91416 NA intron (NM_002918, intron 2 of 20) intron (NM_002918, intron 2 of 20) 19755 NM_002918 5989 Hs.655215 NM_002918 HPRD:02476 RFX1 EFC|RFX regulatory factor X, 1 (influences HLA class II expression) protein-coding 13-PTNLD9-TUMOR_peak_37793 chr4 6751245 6751435 + 10.91313 NA Intergenic Intergenic -33119 NM_001100590 9778 Hs.79276 NM_014743 HPRD:11070 KIAA0232 - KIAA0232 protein-coding 13-PTNLD9-TUMOR_peak_20182 chr16 90231905 90232039 + 10.91038 NA Intergenic Intergenic -89634 NM_001098173 11105 Hs.406695 NM_052996 HPRD:17903 PRDM7 PFM4|ZNF910 PR domain containing 7 protein-coding 13-PTNLD9-TUMOR_peak_18045 chr15 98539220 98539396 + 10.90924 NA Intergenic Intergenic 35375 NM_183376 91947 Hs.6093 NM_183376 HPRD:10664 ARRDC4 - arrestin domain containing 4 protein-coding 13-PTNLD9-TUMOR_peak_41757 chr5 112383583 112383736 + 10.90924 NA intron (NM_002387, intron 14 of 16) intron (NM_002387, intron 14 of 16) 71252 NM_001242377 167227 Hs.443875 NM_152624 HPRD:13125 DCP2 NUDT20 decapping mRNA 2 protein-coding 13-PTNLD9-TUMOR_peak_659 chr1 23158618 23158792 + 10.90556 NA intron (NM_004442, intron 3 of 15) MIRb|SINE|MIR 31014 NR_036214 100422914 NR_036214 miRBase:MI0015860 MIR4253 - microRNA 4253 ncRNA 13-PTNLD9-TUMOR_peak_21569 chr17 55123776 55124033 + 10.90556 NA non-coding (NR_002818, exon 1 of 1) non-coding (NR_002818, exon 1 of 1) 1065 NR_002818 376412 Hs.132299 NR_002818 ENSG00000261192 RNF126P1 - ring finger protein 126 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_738 chr1 25833535 25833664 + 10.90556 NA Intergenic L1PA2|LINE|L1 -36477 NM_015627 26119 Hs.590911 NM_015627 HPRD:05765 LDLRAP1 ARH|ARH1|ARH2|FHCB1|FHCB2 low density lipoprotein receptor adaptor protein 1 protein-coding 13-PTNLD9-TUMOR_peak_584 chr1 19337614 19337847 + 10.90556 NA Intergenic Intergenic -54904 NM_001136265 126917 Hs.466625 NM_001136265 ENSG00000169991 IFFO2 - intermediate filament family orphan 2 protein-coding 13-PTNLD9-TUMOR_peak_16891 chr15 30041848 30042127 + 10.90556 NA intron (NM_001301025, intron 9 of 28) LTR41|LTR|ERVL 71764 NM_001301026 7082 Hs.743990 NM_003257 HPRD:03002 TJP1 ZO-1 tight junction protein 1 protein-coding 13-PTNLD9-TUMOR_peak_26019 chr2 8707278 8707456 + 10.90556 NA non-coding (NR_110257, exon 6 of 6) non-coding (NR_110257, exon 6 of 6) 16555 NR_110257 101929567 Hs.634706 NR_110257 ENSG00000236008 LOC101929567 - uncharacterized LOC101929567 ncRNA 13-PTNLD9-TUMOR_peak_28187 chr2 117746006 117746156 + 10.90556 NA Intergenic Intergenic -826174 NM_006773 8886 Hs.744922 NM_006773 HPRD:05894 DDX18 MrDb DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 protein-coding 13-PTNLD9-TUMOR_peak_7419 chr10 55358701 55358991 + 10.90556 NA Intergenic LTR34|LTR|ERV1 -827386 NM_000242 4153 Hs.499674 NM_000242 HPRD:01107 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose-binding lectin (protein C) 2, soluble protein-coding 13-PTNLD9-TUMOR_peak_19262 chr16 48037209 48037442 + 10.90556 NA Intergenic MLT1K|LTR|ERVL-MaLR -116284 NR_110649 100507534 Hs.407601 NR_110649 ENSG00000261325 LOC100507534 - uncharacterized LOC100507534 ncRNA 13-PTNLD9-TUMOR_peak_6028 chr1 238042655 238042810 + 10.90556 NA intron (NM_021186, intron 12 of 12) intron (NM_021186, intron 12 of 12) 11490 NM_021186 57829 Hs.136241 NM_021186 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 13-PTNLD9-TUMOR_peak_36339 chr3 149167645 149167768 + 10.90556 NA Intergenic Intergenic -24662 NM_004617 7104 Hs.133527 NM_004617 TM4SF4 ILTMP|il-TMP transmembrane 4 L six family member 4 protein-coding 13-PTNLD9-TUMOR_peak_21369 chr17 46869092 46869287 + 10.90110 NA intron (NM_001130918, intron 8 of 15) intron (NM_001130918, intron 8 of 15) 2497 NM_173623 284076 Hs.91930 NM_173623 HPRD:08763 TTLL6 TTL.6 tubulin tyrosine ligase-like family, member 6 protein-coding 13-PTNLD9-TUMOR_peak_13251 chr12 68434379 68434521 + 10.90110 NA Intergenic Intergenic 51225 NR_104124 100885789 Hs.439832 NR_104124 ENSG00000255733 IFNG-AS1 GS1-410F4.2|Tmevpg1 IFNG antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_11895 chr12 5131756 5131994 + 10.90110 NA Intergenic Intergenic -21210 NM_002234 3741 Hs.150208 NM_002234 HPRD:08888 KCNA5 ATFB7|HCK1|HK2|HPCN1|KV1.5|PCN1 potassium voltage-gated channel, shaker-related subfamily, member 5 protein-coding 13-PTNLD9-TUMOR_peak_36839 chr3 177995558 177995691 + 10.90110 NA Intergenic Intergenic -141365 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 13-PTNLD9-TUMOR_peak_10834 chr11 86235177 86235351 + 10.90110 NA intron (NM_001014811, intron 3 of 13) intron (NM_001014811, intron 3 of 13) 147976 NM_001014811 10873 Hs.199743 NM_006680 HPRD:06862 ME3 NADP-ME malic enzyme 3, NADP(+)-dependent, mitochondrial protein-coding 13-PTNLD9-TUMOR_peak_9458 chr11 33499678 33499801 + 10.90110 NA Intergenic Intergenic -64138 NM_012194 25758 Hs.502266 NM_012194 ENSG00000110427 KIAA1549L C11orf41|C11orf69|G2 KIAA1549-like protein-coding 13-PTNLD9-TUMOR_peak_21246 chr17 44140693 44140914 + 10.90110 NA intron (NM_015443, intron 6 of 14) intron (NM_015443, intron 6 of 14) 64187 NM_001007532 246744 Hs.661831 NM_001007532 HPRD:06142 STH MAPTIT saitohin protein-coding 13-PTNLD9-TUMOR_peak_8346 chr10 113235485 113235764 + 10.90110 NA Intergenic Intergenic 398834 NM_000681 150 Hs.249159 NM_000681 HPRD:00078 ADRA2A ADRA2|ADRA2R|ADRAR|ALPHA2AAR|ZNF32 adrenoceptor alpha 2A protein-coding 13-PTNLD9-TUMOR_peak_40664 chr5 38809981 38810144 + 10.90110 NA intron (NR_109951, intron 1 of 3) intron (NR_109951, intron 1 of 3) 35869 NR_109951 101929768 Hs.546623 NR_109951 OSMR-AS1 CTD-2127H9.1 OSMR antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_7846 chr10 80724867 80725077 + 10.90110 NA intron (NR_015429, intron 3 of 7) intron (NR_015429, intron 3 of 7) 102233 NR_024429 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_4402 chr1 172255984 172256193 + 10.90110 NA intron (NM_001136127, intron 15 of 19) intron (NM_001136127, intron 15 of 19) -133740 NM_139240 92346 Hs.517991 NM_139240 HPRD:14291 C1orf105 - chromosome 1 open reading frame 105 protein-coding 13-PTNLD9-TUMOR_peak_30122 chr2 238539850 238539980 + 10.90110 NA intron (NM_001137550, intron 1 of 23) intron (NM_001137550, intron 1 of 23) 3691 NM_001137550 9208 Hs.471779 NM_004735 HPRD:04460 LRRFIP1 FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP leucine rich repeat (in FLII) interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_5282 chr1 206686576 206687304 + 10.89629 NA intron (NM_182663, intron 1 of 5) intron (NM_182663, intron 1 of 5) 6077 NM_182663 83593 Hs.497579 NM_031437 HPRD:06117 RASSF5 Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3 Ras association (RalGDS/AF-6) domain family member 5 protein-coding 13-PTNLD9-TUMOR_peak_11768 chr12 618081 618246 + 10.89478 NA intron (NM_173593, intron 1 of 19) intron (NM_173593, intron 1 of 19) 48620 NM_173593 283358 Hs.504416 NM_173593 HPRD:12514 B4GALNT3 - beta-1,4-N-acetyl-galactosaminyl transferase 3 protein-coding 13-PTNLD9-TUMOR_peak_28401 chr2 129120539 129120758 + 10.89478 NA Intergenic Intergenic -44477 NM_004807 9394 Hs.512841 NM_004807 HPRD:07274 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_44674 chr6 33343121 33343301 + 10.89478 NA Intergenic AluJb|SINE|Alu -16102 NM_002263 3833 Hs.436912 NM_002263 ENSG00000237649 KIFC1 HSET|KNSL2 kinesin family member C1 protein-coding 13-PTNLD9-TUMOR_peak_36156 chr3 139905297 139905698 + 10.88921 NA intron (NM_022131, intron 2 of 16) intron (NM_022131, intron 2 of 16) 251470 NM_022131 64084 Hs.158529 NM_022131 CLSTN2 ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma calsyntenin 2 protein-coding 13-PTNLD9-TUMOR_peak_34054 chr3 23171354 23171577 + 10.88921 NA Intergenic Intergenic -73319 NM_152653 7325 Hs.475688 NM_152653 UBE2E2 UBCH8 ubiquitin-conjugating enzyme E2E 2 protein-coding 13-PTNLD9-TUMOR_peak_6621 chr10 20220608 20220738 + 10.88921 NA intron (NM_001282736, intron 1 of 12) intron (NM_001282736, intron 1 of 12) 115301 NM_032812 84898 Hs.99472 NM_032812 HPRD:08440 PLXDC2 TEM7R plexin domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_50091 chr8 11711473 11711713 + 10.88921 NA intron (NM_001908, intron 1 of 9) intron (NM_001908, intron 1 of 9) 14053 NM_147781 1508 Hs.520898 NM_001908 HPRD:00287 CTSB APPS|CPSB cathepsin B protein-coding 13-PTNLD9-TUMOR_peak_18386 chr16 4730033 4730324 + 10.88921 NA intron (NM_015246, intron 12 of 16) intron (NM_015246, intron 12 of 16) 8859 NR_106827 102466731 NR_106827 MIR6769A hsa-mir-6769a microRNA 6769a ncRNA 13-PTNLD9-TUMOR_peak_29030 chr2 170335943 170336269 + 10.88921 NA promoter-TSS (NM_152384) promoter-TSS (NM_152384) 100 NM_152384 129880 Hs.233398 NM_152384 HPRD:10353 BBS5 - Bardet-Biedl syndrome 5 protein-coding 13-PTNLD9-TUMOR_peak_40930 chr5 56059890 56060173 + 10.88921 NA Intergenic Intergenic -50869 NM_005921 4214 Hs.653654 NM_005921 ENSG00000095015 MAP3K1 MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6 mitogen-activated protein kinase kinase kinase 1, E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_14552 chr13 32420663 32420867 + 10.88921 NA promoter-TSS (NR_027062) promoter-TSS (NR_027062) -155 NR_027062 196549 Hs.507667 NM_145293 EEF1DP3 - eukaryotic translation elongation factor 1 delta pseudogene 3 pseudo 13-PTNLD9-TUMOR_peak_50302 chr8 22530606 22530865 + 10.88921 NA Intergenic Intergenic -4074 NM_018688 55909 Hs.433722 NM_018688 HPRD:05904 BIN3 - bridging integrator 3 protein-coding 13-PTNLD9-TUMOR_peak_28014 chr2 110962468 110962668 + 10.88921 NA promoter-TSS (NM_000272) promoter-TSS (NM_000272) 71 NM_001128179 4867 Hs.280388 NM_000272 HPRD:02019 NPHP1 JBTS4|NPH1|SLSN1 nephronophthisis 1 (juvenile) protein-coding 13-PTNLD9-TUMOR_peak_6088 chr1 243209687 243209815 + 10.88596 NA Intergenic AluSz|SINE|Alu 55295 NR_029401 731275 Hs.722350 NR_029401 LINC01347 - long intergenic non-protein coding RNA 1347 ncRNA 13-PTNLD9-TUMOR_peak_21340 chr17 46103500 46103674 + 10.88025 NA TTS (NM_016429) TTS (NM_016429) 11026 NR_029687 406943 NR_029687 MIR152 MIRN152 microRNA 152 ncRNA 13-PTNLD9-TUMOR_peak_3727 chr1 153551011 153551274 + 10.87796 NA Intergenic L2c|LINE|L2 -12836 NM_005978 6273 Hs.516484 NM_005978 HPRD:01508 S100A2 CAN19|S100L S100 calcium binding protein A2 protein-coding 13-PTNLD9-TUMOR_peak_40655 chr5 38599215 38599352 + 10.87796 NA intron (NR_103554, intron 2 of 8) intron (NR_103554, intron 2 of 8) -3776 NM_002310 3977 Hs.133421 NM_002310 HPRD:01048 LIFR CD118|LIF-R|SJS2|STWS|SWS leukemia inhibitory factor receptor alpha protein-coding 13-PTNLD9-TUMOR_peak_16573 chr14 100670348 100670529 + 10.87796 NA Intergenic FAM|SINE|Alu -34664 NM_003403 7528 Hs.388927 NM_003403 YY1 DELTA|INO80S|NF-E1|UCRBP|YIN-YANG-1 YY1 transcription factor protein-coding 13-PTNLD9-TUMOR_peak_49280 chr7 137505459 137505609 + 10.87796 NA intron (NM_004717, intron 1 of 33) intron (NM_004717, intron 1 of 33) 26075 NM_004717 9162 Hs.242947 NM_004717 HPRD:07238 DGKI DGK-IOTA diacylglycerol kinase, iota protein-coding 13-PTNLD9-TUMOR_peak_26714 chr2 43314160 43314303 + 10.87796 NA Intergenic Intergenic -47549 NR_110585 102723854 Hs.570165 NR_110585 LOC102723854 - uncharacterized LOC102723854 ncRNA 13-PTNLD9-TUMOR_peak_54805 chr9 130281614 130281947 + 10.87796 NA intron (NM_001035534, intron 5 of 13) intron (NM_001035534, intron 5 of 13) 49616 NM_022833 64855 Hs.522401 NM_022833 HPRD:10804 FAM129B C9orf88|MEG-3|MINERVA|OC58|bA356B19.6 family with sequence similarity 129, member B protein-coding 13-PTNLD9-TUMOR_peak_10338 chr11 67056363 67056504 + 10.87796 NA promoter-TSS (NM_207354) promoter-TSS (NM_207354) -329 NM_207354 338692 Hs.438673 NM_207354 HPRD:17349 ANKRD13D - ankyrin repeat domain 13 family, member D protein-coding 13-PTNLD9-TUMOR_peak_24674 chr19 33182586 33182744 + 10.87796 NA promoter-TSS (NM_001105570) promoter-TSS (NM_001105570) -202 NM_001105570 390916 Hs.203961 NM_001105570 ENSG00000213965 NUDT19 RP2 nudix (nucleoside diphosphate linked moiety X)-type motif 19 protein-coding 13-PTNLD9-TUMOR_peak_43082 chr5 173229795 173229956 + 10.87589 NA Intergenic Intergenic -11930 NR_108028 101928154 Hs.366725 NR_108028 LINC01485 - long intergenic non-protein coding RNA 1485 ncRNA 13-PTNLD9-TUMOR_peak_20619 chr17 19092018 19092235 + 10.86906 NA Intergenic AluSx|SINE|Alu -29941 NM_001291905 388436 Hs.677375 NM_001291905 LOC388436 - uncharacterized protein ENSP00000382042 protein-coding 13-PTNLD9-TUMOR_peak_43673 chr6 7314130 7314280 + 10.86705 NA promoter-TSS (NM_001292008) promoter-TSS (NM_001292008) -658 NM_003144 6745 Hs.114033 NM_003144 HPRD:02924 SSR1 TRAPA signal sequence receptor, alpha protein-coding 13-PTNLD9-TUMOR_peak_50880 chr8 48650963 48651114 + 10.86705 NA promoter-TSS (NM_005195) promoter-TSS (NM_005195) -312 NM_005195 1052 Hs.440829 NM_005195 CEBPD C/EBP-delta|CELF|CRP3|NF-IL6-beta CCAAT/enhancer binding protein (C/EBP), delta protein-coding 13-PTNLD9-TUMOR_peak_49406 chr7 141251080 141251290 + 10.86705 NA 5' UTR (NM_018238, exon 1 of 16) 5' UTR (NM_018238, exon 1 of 16) 107 NM_018238 55750 Hs.743318 NM_018238 AGK CATC5|CTRCT38|MTDPS10|MULK acylglycerol kinase protein-coding 13-PTNLD9-TUMOR_peak_25551 chr19 53037164 53037398 + 10.86705 NA intron (NM_001039886, intron 2 of 4) LTR24|LTR|ERV1 6372 NM_001039886 388558 Hs.729294 NM_001039886 ENSG00000198482 ZNF808 - zinc finger protein 808 protein-coding 13-PTNLD9-TUMOR_peak_17446 chr15 65133560 65133940 + 10.85646 NA promoter-TSS (NM_001195059) promoter-TSS (NM_001195059) -332 NM_001195059 80301 Hs.709337 NM_025201 HPRD:15910 PLEKHO2 PLEKHQ1|PP1628|pp9099 pleckstrin homology domain containing, family O member 2 protein-coding 13-PTNLD9-TUMOR_peak_29392 chr2 192483587 192483803 + 10.85646 NA Intergenic MER68|LTR|ERVL -59103 NM_001254736 64859 Hs.591610 NM_022837 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_36672 chr3 169716616 169716862 + 10.85646 NA TTS (NM_003262) TTS (NM_003262) 32159 NM_003262 7095 Hs.744859 NM_003262 HPRD:03706 SEC62 Dtrp1|HTP1|TLOC1|TP-1 SEC62 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_7927 chr10 87875822 87875936 + 10.85646 NA intron (NM_017551, intron 4 of 15) Tigger3a|DNA|TcMar-Tigger 148666 NR_029907 442911 NR_029907 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 13-PTNLD9-TUMOR_peak_4668 chr1 182544782 182544891 + 10.85646 NA intron (NM_021133, intron 6 of 6) MIRb|SINE|MIR 13558 NM_021133 6041 Hs.518545 NM_021133 HPRD:01590 RNASEL PRCA1|RNS4 ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent) protein-coding 13-PTNLD9-TUMOR_peak_9572 chr11 36890051 36890261 + 10.85646 NA Intergenic L2c|LINE|L2 -270327 NM_001243786 5897 Hs.714519 NM_000536 HPRD:08913 RAG2 RAG-2 recombination activating gene 2 protein-coding 13-PTNLD9-TUMOR_peak_11578 chr11 127521128 127521404 + 10.85646 NA Intergenic Intergenic 380301 NR_120580 101929497 Hs.737442 NR_120580 ENSG00000273409 LOC101929497 - uncharacterized LOC101929497 ncRNA 13-PTNLD9-TUMOR_peak_17841 chr15 83654890 83655032 + 10.85646 NA promoter-TSS (NM_031452) promoter-TSS (NM_031452) 6 NM_031452 83640 Hs.80624 NM_031452 HPRD:12845 FAM103A1 C15orf18|HsT19360|RAM family with sequence similarity 103, member A1 protein-coding 13-PTNLD9-TUMOR_peak_11356 chr11 117947466 117947725 + 10.85464 NA promoter-TSS (NM_001083947) promoter-TSS (NM_001083947) -132 NM_019894 56649 Hs.161985 NM_019894 TMPRSS4 CAPH2|MT-SP2|TMPRSS3 transmembrane protease, serine 4 protein-coding 13-PTNLD9-TUMOR_peak_15137 chr13 113348532 113348649 + 10.85464 NA intron (NM_032189, intron 1 of 28) MIR|SINE|MIR 3947 NM_032189 23250 Hs.29189 NM_015205 HPRD:12059 ATP11A ATPIH|ATPIS ATPase, class VI, type 11A protein-coding 13-PTNLD9-TUMOR_peak_38641 chr4 77625297 77625524 + 10.85464 NA intron (NM_020859, intron 2 of 10) L2a|LINE|L2 130689 NR_039654 100616299 NR_039654 MIR4450 - microRNA 4450 ncRNA 13-PTNLD9-TUMOR_peak_48392 chr7 97250820 97251100 + 10.85464 NA Intergenic LTR16A2|LTR|ERVL -110311 NM_003182 6863 Hs.2563 NM_003182 HPRD:08876 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin, precursor 1 protein-coding 13-PTNLD9-TUMOR_peak_25346 chr19 49469099 49469268 + 10.85325 NA intron (NM_000146, intron 2 of 3) CpG-14126 617 NM_000146 2512 Hs.433670 NM_000146 HPRD:00616 FTL LFTD|NBIA3 ferritin, light polypeptide protein-coding 13-PTNLD9-TUMOR_peak_39166 chr4 119563212 119563317 + 10.85176 NA Intergenic AluSz|SINE|Alu 12180 NR_103825 729218 Hs.448518 NR_103825 LOC729218 - uncharacterized LOC729218 pseudo 13-PTNLD9-TUMOR_peak_53000 chr9 32552224 32552425 + 10.85176 NA promoter-TSS (NR_102376) promoter-TSS (NR_102376) 92 NR_102377 100129250 Hs.664395 NR_033991 ENSG00000235453 TOPORS-AS1 C9orf133 TOPORS antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_50010 chr8 7538012 7538257 + 10.85176 NA Intergenic CpG -88972 NR_046351 441328 Hs.694406 NM_001164447 FAM90A10P FAM90A10 putative protein FAM90A10 pseudo 13-PTNLD9-TUMOR_peak_19643 chr16 68794827 68795022 + 10.85176 NA intron (NM_004360, intron 2 of 15) intron (NM_004360, intron 2 of 15) 23729 NM_004360 999 Hs.461086 NM_004360 HPRD:01885 CDH1 Arc-1|CD324|CDHE|ECAD|LCAM|UVO cadherin 1, type 1, E-cadherin (epithelial) protein-coding 13-PTNLD9-TUMOR_peak_35996 chr3 133758021 133758193 + 10.84640 NA Intergenic Intergenic -9187 NM_005630 6578 Hs.518270 NM_005630 HPRD:03269 SLCO2A1 MATR1|OATP2A1|PGT|PHOAR2|SLC21A2 solute carrier organic anion transporter family, member 2A1 protein-coding 13-PTNLD9-TUMOR_peak_52098 chr8 131687925 131688098 + 10.84640 NA Intergenic Intergenic -232105 NM_018482 50807 Hs.655552 NM_018482 HPRD:05809 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 13-PTNLD9-TUMOR_peak_43125 chr5 174641279 174641472 + 10.84640 NA Intergenic Intergenic -218641 NR_046113 441116 Hs.533036 NM_001004348 HPRD:16911 FLJ16171 - FLJ16171 protein ncRNA 13-PTNLD9-TUMOR_peak_13084 chr12 60051129 60051326 + 10.84640 NA intron (NM_001270622, intron 2 of 5) intron (NM_001270622, intron 2 of 5) -31891 NR_073055 9194 Hs.88156 NM_004731 HPRD:06791 SLC16A7 MCT2 solute carrier family 16 (monocarboxylate transporter), member 7 protein-coding 13-PTNLD9-TUMOR_peak_20652 chr17 19969698 19969902 + 10.84640 NA intron (NM_001243439, intron 1 of 14) intron (NM_001243439, intron 1 of 14) -20535 NM_001033553 92521 Hs.431045 NM_152904 HPRD:12301 SPECC1 CYTSB|HCMOGT-1|HCMOGT1|NSP sperm antigen with calponin homology and coiled-coil domains 1 protein-coding 13-PTNLD9-TUMOR_peak_33005 chr22 26143469 26143823 + 10.84640 NA intron (NM_032608, intron 1 of 43) L3|LINE|CR1 5526 NM_032608 84700 Hs.417959 NM_032608 HPRD:09529 MYO18B - myosin XVIIIB protein-coding 13-PTNLD9-TUMOR_peak_49921 chr8 273902 274056 + 10.84640 NA Intergenic Intergenic 59195 NR_103537 157693 Hs.591390 NR_103537 FAM87A - family with sequence similarity 87, member A ncRNA 13-PTNLD9-TUMOR_peak_1960 chr1 59594499 59594779 + 10.84640 NA Intergenic Intergenic 17840 NR_027120 729467 Hs.662291 NR_027120 ENSG00000224609 HSD52 - uncharacterized LOC729467 ncRNA 13-PTNLD9-TUMOR_peak_19766 chr16 75150589 75150723 + 10.84640 NA promoter-TSS (NM_153486) promoter-TSS (NM_153486) 14 NM_194436 197257 Hs.380929 NM_153486 HPRD:06318 LDHD DLD lactate dehydrogenase D protein-coding 13-PTNLD9-TUMOR_peak_10895 chr11 91680450 91680600 + 10.84640 NA Intergenic Intergenic -404737 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10 FAT atypical cadherin 3 protein-coding 13-PTNLD9-TUMOR_peak_42069 chr5 132775572 132775686 + 10.84640 NA intron (NM_015082, intron 3 of 15) intron (NM_015082, intron 3 of 15) -12231 NR_031621 100302134 NR_031621 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 13-PTNLD9-TUMOR_peak_23793 chr19 6828405 6828556 + 10.84640 NA exon (NM_005428, exon 11 of 27) exon (NM_005428, exon 11 of 27) 55801 NM_005428 7409 Hs.116237 NM_005428 HPRD:01284 VAV1 VAV vav 1 guanine nucleotide exchange factor protein-coding 13-PTNLD9-TUMOR_peak_35144 chr3 97483310 97483620 + 10.84640 NA promoter-TSS (NM_032146) promoter-TSS (NM_032146) 100 NR_103511 84100 Hs.373801 NM_032146 HPRD:10588 ARL6 BBS3|RP55 ADP-ribosylation factor-like 6 protein-coding 13-PTNLD9-TUMOR_peak_50521 chr8 29970529 29970802 + 10.84640 NA intron (NM_001128208, intron 3 of 3) AluSz|SINE|Alu 17743 NM_015344 23484 Hs.146585 NM_015344 HPRD:09551 LEPROTL1 HSPC112|Vps55|my047 leptin receptor overlapping transcript-like 1 protein-coding 13-PTNLD9-TUMOR_peak_52642 chr9 3181636 3181874 + 10.84640 NA non-coding (NR_121585, exon 1 of 5) non-coding (NR_121585, exon 1 of 5) 166 NR_121585 101929247 Hs.547178 NR_121585 LINC01231 - long intergenic non-protein coding RNA 1231 ncRNA 13-PTNLD9-TUMOR_peak_2677 chr1 103646291 103646426 + 10.84640 NA Intergenic Intergenic -72306 NM_001854 1301 Hs.523446 NM_001854 HPRD:00375 COL11A1 CO11A1|COLL6|STL2 collagen, type XI, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_7947 chr10 88842068 88842262 + 10.84545 NA intron (NM_005271, intron 1 of 12) intron (NM_005271, intron 1 of 12) 12611 NM_005271 2746 Hs.500409 NM_005271 HPRD:11748 GLUD1 GDH|GDH1|GLUD glutamate dehydrogenase 1 protein-coding 13-PTNLD9-TUMOR_peak_36415 chr3 151553984 151554099 + 10.84545 NA intron (NR_110202, intron 1 of 3) intron (NR_110202, intron 1 of 3) 22180 NM_001086 13 Hs.506908 NM_001086 HPRD:02640 AADAC CES5A1|DAC arylacetamide deacetylase protein-coding 13-PTNLD9-TUMOR_peak_54739 chr9 126147713 126147903 + 10.84545 NA intron (NM_020946, intron 20 of 21) intron (NM_020946, intron 20 of 21) 16750 NR_104603 286204 Hs.568340 NM_173689 HPRD:13093 CRB2 - crumbs family member 2 protein-coding 13-PTNLD9-TUMOR_peak_2353 chr1 87150491 87150750 + 10.84545 NA Intergenic L1HS|LINE|L1 -19633 NM_016009 51100 Hs.136309 NM_016009 HPRD:15333 SH3GLB1 Bif-1|PPP1R70|dJ612B15.2 SH3-domain GRB2-like endophilin B1 protein-coding 13-PTNLD9-TUMOR_peak_20245 chr17 2262614 2263072 + 10.84545 NA intron (NM_014853, intron 2 of 23) intron (NM_014853, intron 2 of 23) 22035 NM_001098509 9905 Hs.513861 NM_014853 HPRD:15284 SGSM2 RUTBC1 small G protein signaling modulator 2 protein-coding 13-PTNLD9-TUMOR_peak_22669 chr18 13801080 13801303 + 10.84545 NA Intergenic CpG -24352 NM_005913 4161 Hs.248145 NM_005913 HPRD:08965 MC5R MC2 melanocortin 5 receptor protein-coding 13-PTNLD9-TUMOR_peak_6944 chr10 35736958 35737456 + 10.84545 NA intron (NM_001282853, intron 2 of 10) L2a|LINE|L2 111405 NM_001282853 219771 Hs.14745 NM_145012 HPRD:10700 CCNY C10orf9|CBCP1|CCNX|CFP1 cyclin Y protein-coding 13-PTNLD9-TUMOR_peak_43144 chr5 175493697 175493836 + 10.84545 NA intron (NM_001265615, intron 1 of 19) intron (NM_001265615, intron 1 of 19) 3054 NM_001265615 202134 Hs.368516 NM_001079529 ENSG00000182230 FAM153B - family with sequence similarity 153, member B protein-coding 13-PTNLD9-TUMOR_peak_20060 chr16 88268362 88268545 + 10.84224 NA Intergenic Intergenic 40566 NR_110944 101928880 Hs.634835 NR_110944 ENSG00000260420 LOC101928880 LA16c-444G7.2 uncharacterized LOC101928880 ncRNA 13-PTNLD9-TUMOR_peak_1124 chr1 36560350 36560672 + 10.84224 NA TTS (NM_005202) TTS (NM_005202) 6058 NM_017825 54936 Hs.18021 NM_017825 HPRD:12432 ADPRHL2 ARH3 ADP-ribosylhydrolase like 2 protein-coding 13-PTNLD9-TUMOR_peak_6154 chr1 245878652 245878923 + 10.84189 NA Intergenic Intergenic 560500 NM_018012 55083 Hs.368096 NM_018012 ENSG00000162849 KIF26B - kinesin family member 26B protein-coding 13-PTNLD9-TUMOR_peak_48073 chr7 76266471 76266621 + 10.84189 NA Intergenic Intergenic -9926 NM_012230 22932 Hs.488877 NM_012230 HPRD:15974 POMZP3 POM-ZP3|POM121 POM121 and ZP3 fusion protein-coding 13-PTNLD9-TUMOR_peak_6311 chr10 3528665 3528810 + 10.84189 NA Intergenic Intergenic 298736 NM_001300 1316 Hs.4055 NM_001300 HPRD:03632 KLF6 BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9 Kruppel-like factor 6 protein-coding 13-PTNLD9-TUMOR_peak_15963 chr14 61994540 61994706 + 10.84189 NA intron (NM_006255, intron 10 of 13) intron (NM_006255, intron 10 of 13) 42289 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LOC101927780 - uncharacterized LOC101927780 ncRNA 13-PTNLD9-TUMOR_peak_52535 chr8 145740343 145740697 + 10.83853 NA intron (NM_004260, intron 8 of 21) intron (NM_004260, intron 8 of 21) 2690 NM_004260 9401 Hs.31442 NM_004260 HPRD:04805 RECQL4 RECQ4 RecQ protein-like 4 protein-coding 13-PTNLD9-TUMOR_peak_37307 chr3 194030660 194030931 + 10.82916 NA promoter-TSS (NR_024480) promoter-TSS (NR_024480) -202 NR_024480 100131551 Hs.128066 NR_024480 ENSG00000214145 LINC00887 - long intergenic non-protein coding RNA 887 ncRNA 13-PTNLD9-TUMOR_peak_34584 chr3 50263639 50263809 + 10.82030 NA promoter-TSS (NM_001282620) promoter-TSS (NM_001282620) -396 NM_001282619 2771 Hs.77269 NM_002070 HPRD:00764 GNAI2 GIP|GNAI2B|H_LUCA15.1|H_LUCA16.1 guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2 protein-coding 13-PTNLD9-TUMOR_peak_16143 chr14 69506108 69506280 + 10.81466 NA Intergenic Intergenic 59795 NR_073422 161159 Hs.603341 NR_073422 ENSG00000259062 ACTN1-AS1 C14orf84 ACTN1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_3946 chr1 156480575 156480774 + 10.81466 NA Intergenic Intergenic -10040 NM_005920 4209 Hs.314327 NM_005920 HPRD:02810 MEF2D - myocyte enhancer factor 2D protein-coding 13-PTNLD9-TUMOR_peak_20874 chr17 33569883 33570085 + 10.81466 NA promoter-TSS (NM_144975) promoter-TSS (NM_144975) -102 NM_144975 162394 Hs.709347 NM_144975 SLFN5 - schlafen family member 5 protein-coding 13-PTNLD9-TUMOR_peak_36937 chr3 183281075 183281235 + 10.81466 NA Intergenic AluSc8|SINE|Alu -7656 NM_130446 89857 Hs.659147 NM_130446 HPRD:10035 KLHL6 - kelch-like family member 6 protein-coding 13-PTNLD9-TUMOR_peak_26680 chr2 42329227 42329627 + 10.81466 NA Intergenic Intergenic 54266 NM_138370 91461 Hs.408542 NM_138370 HPRD:18707 PKDCC SGK493|Vlk protein kinase domain containing, cytoplasmic protein-coding 13-PTNLD9-TUMOR_peak_11225 chr11 112192594 112192923 + 10.81466 NA Intergenic Intergenic -61175 NM_001145024 349633 Hs.632097 NM_001145024 ENSG00000188771 PLET1 C11orf34 placenta expressed transcript 1 protein-coding 13-PTNLD9-TUMOR_peak_43284 chr5 178741168 178741392 + 10.80803 NA intron (NM_021599, intron 2 of 10) intron (NM_021599, intron 2 of 10) 31151 NM_021599 9509 Hs.23871 NM_014244 HPRD:05173 ADAMTS2 ADAM-TS2|ADAMTS-2|ADAMTS-3|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI ADAM metallopeptidase with thrombospondin type 1 motif, 2 protein-coding 13-PTNLD9-TUMOR_peak_51302 chr8 94850075 94850299 + 10.80803 NA Intergenic L2b|LINE|L2 78160 NR_039602 100616169 NR_039602 miRBase:MI0003840 MIR378D2 - microRNA 378d-2 ncRNA 13-PTNLD9-TUMOR_peak_26047 chr2 9455512 9455630 + 10.80803 NA intron (NM_003887, intron 3 of 27) intron (NM_003887, intron 3 of 27) 108072 NM_004763 9270 Hs.467662 NM_004763 HPRD:06194 ITGB1BP1 ICAP-1A|ICAP-1B|ICAP-1alpha|ICAP1|ICAP1A|ICAP1B integrin beta 1 binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_8894 chr11 4680215 4680367 + 10.80803 NA Intergenic HERV1_LTRa|LTR|ERV1 15135 NM_152430 143503 Hs.470038 NM_152430 HPRD:14996 OR51E1 D-GPCR|DGPCR|GPR136|GPR164|OR51E1P|OR52A3P|POGR|PSGR2 olfactory receptor, family 51, subfamily E, member 1 protein-coding 13-PTNLD9-TUMOR_peak_29239 chr2 180133179 180133290 + 10.80803 NA Intergenic MLT1M|LTR|ERVL-MaLR -3884 NM_178123 91404 Hs.30977 NM_178123 HPRD:11549 SESTD1 SOLO SEC14 and spectrin domains 1 protein-coding 13-PTNLD9-TUMOR_peak_52461 chr8 144822495 144822905 + 10.80803 NA intron (NR_033849, intron 3 of 3) CpG-26161 6390 NR_033849 100128338 Hs.493171 NR_033849 ENSG00000203499 FAM83H-AS1 - FAM83H antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_28045 chr2 111689341 111689467 + 10.80803 NA intron (NM_001142807, intron 11 of 17) L1ME1|LINE|L1 183761 NR_122074 400997 Hs.652337 NR_122074 HPRD:16971 LOC400997 - uncharacterized LOC400997 ncRNA 13-PTNLD9-TUMOR_peak_54956 chr9 135145321 135145563 + 10.80803 NA intron (NM_015046, intron 24 of 25) intron (NM_015046, intron 24 of 25) 84930 NM_015046 23064 Hs.460317 NM_015046 HPRD:07622 SETX ALS4|AOA2|SCAR1|bA479K20.2 senataxin protein-coding 13-PTNLD9-TUMOR_peak_9590 chr11 39988859 39988990 + 10.80803 NA Intergenic AluY|SINE|Alu 325756 NR_047674 57689 Hs.745123 NM_020929 HPRD:12303 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 13-PTNLD9-TUMOR_peak_35754 chr3 126824710 126824883 + 10.80803 NA Intergenic Intergenic -87178 NM_001007534 285311 Hs.591284 NM_001007534 HPRD:16949 C3orf56 - chromosome 3 open reading frame 56 protein-coding 13-PTNLD9-TUMOR_peak_7825 chr10 79658966 79659169 + 10.80803 NA intron (NM_004747, intron 1 of 31) intron (NM_004747, intron 1 of 31) 27281 NM_004747 9231 Hs.652690 NM_004747 HPRD:04972 DLG5 LP-DLG|P-DLG5|PDLG discs, large homolog 5 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_24515 chr19 21950325 21950504 + 10.80803 NA promoter-TSS (NM_173531) promoter-TSS (NM_173531) 16 NM_173531 163227 Hs.365142 NM_173531 HPRD:10359 ZNF100 - zinc finger protein 100 protein-coding 13-PTNLD9-TUMOR_peak_56078 chrX 68215899 68216256 + 10.80803 NA Intergenic Intergenic 167237 NM_004429 1947 Hs.144700 NM_004429 HPRD:02072 EFNB1 CFND|CFNS|EFB1|EFL3|EPLG2|Elk-L|LERK2 ephrin-B1 protein-coding 13-PTNLD9-TUMOR_peak_15018 chr13 101285757 101286071 + 10.80803 NA intron (NM_001286453, intron 9 of 15) Tigger3a|DNA|TcMar-Tigger 41275 NM_001079669 84899 Hs.190983 NM_032813 HPRD:07864 TMTC4 - transmembrane and tetratricopeptide repeat containing 4 protein-coding 13-PTNLD9-TUMOR_peak_1181 chr1 38000092 38000318 + 10.80504 NA 3' UTR (NM_024700, exon 4 of 4) 3' UTR (NM_024700, exon 4 of 4) 19740 NM_024700 79753 Hs.47232 NM_024700 HPRD:06999 SNIP1 PMRED Smad nuclear interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_4034 chr1 158985394 158985594 + 10.80504 NA intron (NM_001206567, intron 2 of 10) intron (NM_001206567, intron 2 of 10) 5812 NM_001206567 3428 Hs.380250 NM_005531 HPRD:00969 IFI16 IFNGIP1|PYHIN2 interferon, gamma-inducible protein 16 protein-coding 13-PTNLD9-TUMOR_peak_49080 chr7 130572070 130572237 + 10.80504 NA intron (NR_110472, intron 2 of 3) intron (NR_110472, intron 2 of 3) -9855 NR_029517 407024 NR_029517 miRBase:MI0000105 MIR29B1 MIRN29B1|miRNA29B1 microRNA 29b-1 ncRNA 13-PTNLD9-TUMOR_peak_51840 chr8 124692697 124692938 + 10.80504 NA TTS (NM_004306) TTS (NM_004306) -27627 NM_001081675 340359 Hs.450252 NM_001081675 ENSG00000175946 KLHL38 C8ORFK36 kelch-like family member 38 protein-coding 13-PTNLD9-TUMOR_peak_51916 chr8 126568682 126568810 + 10.80504 NA Intergenic Intergenic 124295 NM_001282985 10221 Hs.444947 NM_025195 HPRD:09863 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 13-PTNLD9-TUMOR_peak_19578 chr16 67311271 67311416 + 10.80504 NA promoter-TSS (NM_001129727) promoter-TSS (NM_001129727) -70 NM_015432 25894 Hs.188781 NM_015432 HPRD:10890 PLEKHG4 ARHGEF44|PRTPHN1|SCA4 pleckstrin homology domain containing, family G (with RhoGef domain) member 4 protein-coding 13-PTNLD9-TUMOR_peak_52321 chr8 141601264 141601757 + 10.80504 NA intron (NM_012154, intron 1 of 18) intron (NM_012154, intron 1 of 18) 44136 NM_012154 27161 Hs.743313 NM_012154 HPRD:06943 AGO2 EIF2C2|Q10 argonaute RISC catalytic component 2 protein-coding 13-PTNLD9-TUMOR_peak_38785 chr4 85515075 85515238 + 10.80189 NA intron (NM_001263, intron 1 of 12) LTR23|LTR|ERV1 11099 NM_001263 1040 Hs.654899 NM_001263 HPRD:11944 CDS1 CDS CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 1 protein-coding 13-PTNLD9-TUMOR_peak_21242 chr17 43819670 43819947 + 10.80189 NA intron (NM_001256299, intron 3 of 14) intron (NM_001256299, intron 3 of 14) -41838 NM_001145146 1394 Hs.417628 NM_004382 HPRD:08830 CRHR1 CRF-R|CRF-R-1|CRF-R1|CRF1|CRFR-1|CRFR1|CRH-R-1|CRH-R1|CRH-R1h|CRHR|CRHR1L|CRHR1f corticotropin releasing hormone receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_7789 chr10 77107042 77107248 + 10.80189 NA intron (NR_038226, intron 2 of 3) intron (NR_038226, intron 2 of 3) 51004 NR_038226 253264 Hs.662111 NR_038223 ENSG00000226051 ZNF503-AS1 - ZNF503 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_54209 chr9 101782162 101782515 + 10.80189 NA intron (NM_001855, intron 11 of 41) intron (NM_001855, intron 11 of 41) 76343 NM_001855 1306 Hs.409034 NM_001855 HPRD:00380 COL15A1 - collagen, type XV, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_32357 chr21 40760581 40760723 + 10.80189 NA intron (NM_001146218, intron 1 of 4) CpG 960 NM_001146218 7485 Hs.198308 NM_004627 HPRD:04224 WRB CHD5 tryptophan rich basic protein protein-coding 13-PTNLD9-TUMOR_peak_51081 chr8 67448036 67448319 + 10.80189 NA Intergenic Intergenic 42686 NM_152765 254778 Hs.268869 NM_152765 HPRD:14565 C8orf46 - chromosome 8 open reading frame 46 protein-coding 13-PTNLD9-TUMOR_peak_45473 chr6 71998086 71998667 + 10.80189 NA promoter-TSS (NM_024576) promoter-TSS (NM_024576) -101 NM_024576 79627 Hs.648434 NM_024576 OGFRL1 dJ331H24.1 opioid growth factor receptor-like 1 protein-coding 13-PTNLD9-TUMOR_peak_46615 chr7 82240 82465 + 10.80189 NA Intergenic CpG -67366 NR_108065 100507642 Hs.557780 NR_108064 LOC100507642 - uncharacterized LOC100507642 ncRNA 13-PTNLD9-TUMOR_peak_30872 chr20 33945564 33945693 + 10.80189 NA intron (NM_199487, intron 6 of 8) intron (NM_199487, intron 6 of 8) 54317 NM_018244 55245 Hs.726290 NM_018244 HPRD:12770 UQCC1 BFZB|C20orf44|CBP3|UQCC ubiquinol-cytochrome c reductase complex assembly factor 1 protein-coding 13-PTNLD9-TUMOR_peak_43269 chr5 178168031 178168368 + 10.80189 NA Intergenic MLT1J|LTR|ERVL-MaLR -10496 NM_005649 6940 Hs.484324 NM_005649 HPRD:03900 ZNF354A EZNF|HEL104|HKL1|KID-1|KID1|TCF17 zinc finger protein 354A protein-coding 13-PTNLD9-TUMOR_peak_26995 chr2 58961581 58961704 + 10.79220 NA intron (NR_033873, intron 2 of 13) intron (NR_033873, intron 2 of 13) 213754 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 13-PTNLD9-TUMOR_peak_28742 chr2 152779475 152779648 + 10.79220 NA intron (NM_001005746, intron 2 of 13) intron (NM_001005746, intron 2 of 13) 50924 NM_001005747 785 Hs.120725 NM_000726 HPRD:09057 CACNB4 CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6 calcium channel, voltage-dependent, beta 4 subunit protein-coding 13-PTNLD9-TUMOR_peak_2829 chr1 111098001 111098154 + 10.79220 NA Intergenic CpG -36280 NM_005549 3744 Hs.248140 NM_005549 HPRD:03882 KCNA10 Kcn1|Kv1.8 potassium voltage-gated channel, shaker-related subfamily, member 10 protein-coding 13-PTNLD9-TUMOR_peak_8309 chr10 111103151 111103386 + 10.79220 NA Intergenic Intergenic 172853 NR_046928 100873762 NR_046928 RNU6-53P RNU6-53 RNA, U6 small nuclear 53, pseudogene snRNA 13-PTNLD9-TUMOR_peak_21673 chr17 58114587 58114698 + 10.79220 NA Intergenic L1MD2|LINE|L1 5824 NR_039890 100616210 NR_039890 miRBase:MI0017374 MIR4737 - microRNA 4737 ncRNA 13-PTNLD9-TUMOR_peak_17378 chr15 59886731 59887088 + 10.79220 NA Intergenic Intergenic -17073 NM_004751 9245 Hs.194710 NM_004751 HPRD:06018 GCNT3 C2/4GnT|C24GNT|C2GNT2|C2GNTM|GNTM glucosaminyl (N-acetyl) transferase 3, mucin type protein-coding 13-PTNLD9-TUMOR_peak_39694 chr4 154598197 154598483 + 10.79220 NA Intergenic Intergenic -7101 NM_003264 7097 Hs.519033 NM_003264 TLR2 CD282|TIL4 toll-like receptor 2 protein-coding 13-PTNLD9-TUMOR_peak_44509 chr6 31055429 31055634 + 10.79220 NA Intergenic Intergenic 24801 NM_014070 29113 Hs.272214 NM_014070 HPRD:12856 C6orf15 STG chromosome 6 open reading frame 15 protein-coding 13-PTNLD9-TUMOR_peak_4258 chr1 165581388 165581575 + 10.79220 NA Intergenic HAL1b|LINE|L1 -18629 NM_004528 4259 Hs.191734 NM_004528 HPRD:05192 MGST3 GST-III microsomal glutathione S-transferase 3 protein-coding 13-PTNLD9-TUMOR_peak_15172 chr13 114610739 114610947 + 10.79220 NA intron (NM_001278674, intron 3 of 7) intron (NM_001278674, intron 3 of 7) 12767 NM_001278674 643365 Hs.740982 NM_001039767 LINC00452 - long intergenic non-protein coding RNA 452 protein-coding 13-PTNLD9-TUMOR_peak_4241 chr1 165114185 165114292 + 10.79220 NA Intergenic Intergenic 211240 NM_001174069 4009 Hs.667312 NM_177398 HPRD:02623 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1, alpha protein-coding 13-PTNLD9-TUMOR_peak_28278 chr2 121352564 121352838 + 10.79220 NA Intergenic Intergenic -128776 NR_027181 84931 Hs.334519 NM_032845 HPRD:08604 LINC01101 - long intergenic non-protein coding RNA 1101 ncRNA 13-PTNLD9-TUMOR_peak_9347 chr11 26621089 26621300 + 10.79220 NA exon (NM_031418, exon 17 of 27) exon (NM_031418, exon 17 of 27) -27379 NM_001135091 143662 Hs.407152 NM_145650 HPRD:16349 MUC15 MUC-15|PAS3|PASIII mucin 15, cell surface associated protein-coding 13-PTNLD9-TUMOR_peak_11345 chr11 117454153 117454492 + 10.79220 NA intron (NM_020693, intron 3 of 32) intron (NM_020693, intron 3 of 32) 213654 NM_020693 57453 Hs.659513 NM_020693 HPRD:10921 DSCAML1 - Down syndrome cell adhesion molecule like 1 protein-coding 13-PTNLD9-TUMOR_peak_27055 chr2 64089975 64090203 + 10.79220 NA intron (NM_001001521, intron 3 of 9) intron (NM_001001521, intron 3 of 9) 21075 NM_006759 7360 Hs.516217 NM_006759 HPRD:08934 UGP2 UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 UDP-glucose pyrophosphorylase 2 protein-coding 13-PTNLD9-TUMOR_peak_32675 chr22 18320177 18320401 + 10.79220 NA intron (NM_001122731, intron 19 of 19) intron (NM_001122731, intron 19 of 19) 60233 NR_103718 200298 Hs.517397 NR_103718 ENSG00000269220 LINC00528 C22orf37 long intergenic non-protein coding RNA 528 ncRNA 13-PTNLD9-TUMOR_peak_22994 chr18 40026220 40026546 + 10.79220 NA intron (NR_046456, intron 5 of 7) MamRep1527|LTR|LTR 259750 NR_046457 284260 Hs.652819 NR_046174 ENSG00000267586 LINC00907 - long intergenic non-protein coding RNA 907 ncRNA 13-PTNLD9-TUMOR_peak_14650 chr13 41768405 41768817 + 10.79220 NA promoter-TSS (NM_032138) promoter-TSS (NM_032138) 91 NM_032138 84078 Hs.63841 NM_032138 KBTBD7 - kelch repeat and BTB (POZ) domain containing 7 protein-coding 13-PTNLD9-TUMOR_peak_11243 chr11 112798936 112799203 + 10.78970 NA Intergenic HERVK3-int|LTR|ERVK -32900 NM_181351 4684 Hs.503878 NM_000615 HPRD:00301 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 13-PTNLD9-TUMOR_peak_8749 chr11 707856 708010 + 10.78970 NA intron (NM_022772, intron 1 of 20) intron (NM_022772, intron 1 of 20) 1813 NM_022772 64787 Hs.55016 NM_022772 HPRD:10940 EPS8L2 EPS8R2 EPS8-like 2 protein-coding 13-PTNLD9-TUMOR_peak_35936 chr3 131853549 131853682 + 10.78970 NA Intergenic L2c|LINE|L2 -95165 NM_153429 131034 Hs.199877 NM_130808 HPRD:05017 CPNE4 COPN4|CPN4 copine IV protein-coding 13-PTNLD9-TUMOR_peak_44563 chr6 31702542 31702938 + 10.78460 NA intron (NM_001287593, intron 2 of 6).7 intron (NM_001287593, intron 2 of 6).7 1582 NM_001287594 1192 Hs.414565 NM_001288 HPRD:04188 CLIC1 G6|NCC27 chloride intracellular channel 1 protein-coding 13-PTNLD9-TUMOR_peak_4126 chr1 161085165 161085346 + 10.77996 NA intron (NM_012394, intron 1 of 3) MER44D|DNA|TcMar-Tigger -2607 NM_001185092 4817 Hs.146406 NM_005600 HPRD:07056 NIT1 - nitrilase 1 protein-coding 13-PTNLD9-TUMOR_peak_18288 chr16 3018896 3019027 + 10.77764 NA promoter-TSS (NM_152341) promoter-TSS (NM_152341) -285 NM_001284512 124222 Hs.351474 NM_152341 HPRD:08697 PAQR4 - progestin and adipoQ receptor family member IV protein-coding 13-PTNLD9-TUMOR_peak_47338 chr7 44032514 44032768 + 10.77683 NA intron (NR_003655, intron 4 of 15) MIRc|SINE|MIR -7848 NM_175064 285955 Hs.645483 NM_175064 HPRD:11677 SPDYE1 Ringo1|SPDYE|WBSCR19 speedy/RINGO cell cycle regulator family member E1 protein-coding 13-PTNLD9-TUMOR_peak_39430 chr4 140517292 140517727 + 10.77545 NA Intergenic Intergenic -39932 NM_030648 80854 Hs.480792 NM_030648 HPRD:16226 SETD7 KMT7|SET7|SET7/9|SET9 SET domain containing (lysine methyltransferase) 7 protein-coding 13-PTNLD9-TUMOR_peak_16332 chr14 77589944 77590250 + 10.77545 NA Intergenic Intergenic 18037 NM_174976 283576 Hs.525485 NM_174976 HPRD:12655 ZDHHC22 C14orf59 zinc finger, DHHC-type containing 22 protein-coding 13-PTNLD9-TUMOR_peak_4705 chr1 183287575 183287861 + 10.77545 NA intron (NM_015039, intron 1 of 10) intron (NM_015039, intron 1 of 10) -13709 NM_170706 23057 Hs.497123 NM_015039 HPRD:09786 NMNAT2 C1orf15|PNAT2 nicotinamide nucleotide adenylyltransferase 2 protein-coding 13-PTNLD9-TUMOR_peak_42127 chr5 133968394 133968642 + 10.77545 NA promoter-TSS (NM_001033503) promoter-TSS (NM_001033503) 15 NM_001033503 51128 Hs.432984 NM_016103 HPRD:09647 SAR1B ANDD|CMRD|GTBPB|SARA2 secretion associated, Ras related GTPase 1B protein-coding 13-PTNLD9-TUMOR_peak_51909 chr8 126510489 126510693 + 10.77545 NA Intergenic Intergenic 66140 NM_001282985 10221 Hs.444947 NM_025195 HPRD:09863 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 13-PTNLD9-TUMOR_peak_24634 chr19 30291152 30291343 + 10.77545 NA Intergenic L2|LINE|L2 -11654 NM_001238 898 Hs.244723 NM_001238 HPRD:00455 CCNE1 CCNE cyclin E1 protein-coding 13-PTNLD9-TUMOR_peak_47743 chr7 65576012 65576170 + 10.76890 NA Intergenic L2c|LINE|L2 -3714 NM_001142414 27297 Hs.300684 NM_014478 HPRD:12089 CRCP CGRP-RCP|CGRPRCP|RCP|RCP9 CGRP receptor component protein-coding 13-PTNLD9-TUMOR_peak_24092 chr19 13024697 13024853 + 10.76890 NA intron (NM_001105578, intron 2 of 5) L2b|LINE|L2 5311 NM_001105578 256126 Hs.655173 NM_001105578 SYCE2 CESC1 synaptonemal complex central element protein 2 protein-coding 13-PTNLD9-TUMOR_peak_31848 chr20 62918120 62918264 + 10.76657 NA Intergenic (TTAGGG)n|Simple_repeat|Simple_repeat -3546 NR_040415 140849 Hs.745565 NR_040415 LINC00266-1 C20orf69|NCRNA00266|NCRNA00266-1|bA476I15.3 long intergenic non-protein coding RNA 266-1 ncRNA 13-PTNLD9-TUMOR_peak_17360 chr15 58839526 58839783 + 10.76011 NA intron (NM_000236, intron 5 of 8) intron (NM_000236, intron 5 of 8) -48720 NR_120338 101928694 Hs.655781 NR_120338 ENSG00000259293 LOC101928694 - uncharacterized LOC101928694 ncRNA 13-PTNLD9-TUMOR_peak_38433 chr4 55147619 55147889 + 10.76011 NA intron (NM_006206, intron 16 of 22) intron (NM_006206, intron 16 of 22) 52490 NM_006206 5156 Hs.74615 NM_006206 HPRD:01429 PDGFRA CD140A|PDGFR-2|PDGFR2|RHEPDGFRA platelet-derived growth factor receptor, alpha polypeptide protein-coding 13-PTNLD9-TUMOR_peak_35547 chr3 122029289 122029483 + 10.76011 NA Intergenic Intergenic -14625 NM_005213 1475 Hs.518198 NM_005213 HPRD:01697 CSTA AREI|STF1|STFA cystatin A (stefin A) protein-coding 13-PTNLD9-TUMOR_peak_42516 chr5 146828369 146828586 + 10.76011 NA intron (NM_001197294, intron 1 of 13) intron (NM_001197294, intron 1 of 13) 4783 NM_001387 1809 Hs.519659 NM_001387 HPRD:03104 DPYSL3 CRMP-4|CRMP4|DRP-3|DRP3|LCRMP|ULIP|ULIP-1 dihydropyrimidinase-like 3 protein-coding 13-PTNLD9-TUMOR_peak_11497 chr11 123693431 123693591 + 10.76011 NA Intergenic Intergenic -16454 NM_001005325 390261 Hs.557924 NM_001005325 HPRD:15065 OR6M1 OR11-271 olfactory receptor, family 6, subfamily M, member 1 protein-coding 13-PTNLD9-TUMOR_peak_15292 chr14 23005973 23006126 + 10.76011 NA Intergenic Intergenic 52094 NM_001344 1603 Hs.82890 NM_001344 HPRD:02589 DAD1 OST2 defender against cell death 1 protein-coding 13-PTNLD9-TUMOR_peak_14167 chr12 123436943 123437099 + 10.76011 NA intron (NM_001243013, intron 2 of 10) intron (NM_001243013, intron 2 of 10) 14035 NM_203444 23457 Hs.511951 NM_019624 HPRD:09262 ABCB9 EST122234|TAPL ATP-binding cassette, sub-family B (MDR/TAP), member 9 protein-coding 13-PTNLD9-TUMOR_peak_17744 chr15 79030597 79030736 + 10.76011 NA Intergenic Intergenic -13713 NR_036495 646938 Hs.449783 NR_036495 ENSG00000238166 LOC646938 - TBC1 domain family, member 2B pseudogene pseudo 13-PTNLD9-TUMOR_peak_18407 chr16 5091935 5092085 + 10.76011 NA intron (NR_038913, intron 1 of 1) MLT1C|LTR|ERVL-MaLR -8068 NM_016256 51172 Hs.21334 NM_016256 HPRD:12145 NAGPA APAA|UCE N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase protein-coding 13-PTNLD9-TUMOR_peak_8959 chr11 8350463 8350715 + 10.76011 NA Intergenic Intergenic -60407 NM_001270428 4004 Hs.654426 NM_002315 HPRD:01738 LMO1 RBTN1|RHOM1|TTG1 LIM domain only 1 (rhombotin 1) protein-coding 13-PTNLD9-TUMOR_peak_46401 chr6 157744192 157744418 + 10.76011 NA intron (NM_018452, intron 1 of 3) CpG 986 NM_018452 729515 Hs.157212 NM_018452 ENSG00000215712 TMEM242 BM033|C6orf35 transmembrane protein 242 protein-coding 13-PTNLD9-TUMOR_peak_26201 chr2 16606989 16607196 + 10.76011 NA Intergenic Intergenic 240042 NM_030797 81553 Hs.467769 NM_030797 HPRD:07729 FAM49A - family with sequence similarity 49, member A protein-coding 13-PTNLD9-TUMOR_peak_27488 chr2 86931622 86931862 + 10.76011 NA intron (NM_001198954, intron 1 of 7) MLT1F2|LTR|ERVL-MaLR -15672 NM_022780 64795 Hs.75277 NM_022780 HPRD:07841 RMND5A CTLH|GID2|GID2A|RMD5|p44CTLH required for meiotic nuclear division 5 homolog A (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_43771 chr6 11273166 11273382 + 10.76011 NA intron (NM_001142393, intron 2 of 7) intron (NM_001142393, intron 2 of 7) -40359 NM_001271033 4739 Hs.37982 NM_006403 HPRD:11888 NEDD9 CAS-L|CAS2|CASL|CASS2|HEF1 neural precursor cell expressed, developmentally down-regulated 9 protein-coding 13-PTNLD9-TUMOR_peak_3008 chr1 117169743 117169891 + 10.76011 NA intron (NM_001007237, intron 2 of 10) intron (NM_001007237, intron 2 of 10) 39761 NM_001542 3321 Hs.171057 NM_001542 HPRD:04602 IGSF3 EWI-3|V8 immunoglobulin superfamily, member 3 protein-coding 13-PTNLD9-TUMOR_peak_22113 chr17 75327673 75327843 + 10.76011 NA intron (NM_006640, intron 1 of 10) intron (NM_006640, intron 1 of 10) 12161 NM_006640 10801 Hs.440932 NM_006640 HPRD:10360 SEPT9 AF17q25|MSF|MSF1|NAPB|PNUTL4|SINT1|SeptD1 septin 9 protein-coding 13-PTNLD9-TUMOR_peak_47021 chr7 21582565 21582692 + 10.76011 NA promoter-TSS (NM_001277115) promoter-TSS (NM_001277115) -205 NM_001277115 8701 Hs.520245 NM_001277115 HPRD:09134 DNAH11 CILD7|DNAHBL|DNAHC11|DNHBL|DPL11 dynein, axonemal, heavy chain 11 protein-coding 13-PTNLD9-TUMOR_peak_10943 chr11 94465342 94465519 + 10.76011 NA Intergenic Intergenic -36078 NM_001301007 154810 Hs.503594 NM_130847 HPRD:12451 AMOTL1 JEAP angiomotin like 1 protein-coding 13-PTNLD9-TUMOR_peak_39710 chr4 155450985 155451123 + 10.76011 NA Intergenic Intergenic 20531 NM_001201564 5356 Hs.249996 NM_002669 HPRD:16181 PLRG1 Cwc1|PRL1|PRP46|PRPF46|TANGO4 pleiotropic regulator 1 protein-coding 13-PTNLD9-TUMOR_peak_41286 chr5 73871654 73871790 + 10.76011 NA Intergenic Intergenic -64126 NM_001292004 3074 Hs.69293 NM_000521 HPRD:06043 HEXB ENC-1AS|HEL-248 hexosaminidase B (beta polypeptide) protein-coding 13-PTNLD9-TUMOR_peak_27487 chr2 86930872 86931055 + 10.76011 NA intron (NM_001198954, intron 1 of 7) LTR3B|LTR|ERVK -16451 NM_022780 64795 Hs.75277 NM_022780 HPRD:07841 RMND5A CTLH|GID2|GID2A|RMD5|p44CTLH required for meiotic nuclear division 5 homolog A (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_16336 chr14 77770118 77770268 + 10.76011 NA intron (NM_013382, intron 4 of 20) L2a|LINE|L2 17032 NM_013382 29954 Hs.132989 NM_013382 HPRD:09592 POMT2 LGMD2N|MDDGA2|MDDGB2|MDDGC2 protein-O-mannosyltransferase 2 protein-coding 13-PTNLD9-TUMOR_peak_1284 chr1 40409286 40409466 + 10.76011 NA Intergenic MER21-int|LTR|ERVL -11408 NM_001136493 84879 Hs.655177 NM_032793 HPRD:07861 MFSD2A MFSD2|NLS1 major facilitator superfamily domain containing 2A protein-coding 13-PTNLD9-TUMOR_peak_236 chr1 7531067 7531264 + 10.75868 NA intron (NM_015215, intron 6 of 22) intron (NM_015215, intron 6 of 22) -300164 NM_004781 9341 Hs.66708 NM_004781 HPRD:04711 VAMP3 CEB vesicle-associated membrane protein 3 protein-coding 13-PTNLD9-TUMOR_peak_35016 chr3 75551437 75551577 + 10.75868 NA Intergenic HERVS71-int|LTR|ERV1 -67241 NR_024241 692099 Hs.591652 NR_024241 ENSG00000244026 FAM86DP FAM86D family with sequence similarity 86, member D, pseudogene pseudo 13-PTNLD9-TUMOR_peak_28486 chr2 132804872 132805029 + 10.75868 NA Intergenic MLT1A0|LTR|ERVL-MaLR 114575 NR_027019 554226 Hs.380689 NR_027019 ENSG00000163046 ANKRD30BL ANKRD30BP3|NCRNA00164 ankyrin repeat domain 30B-like pseudo 13-PTNLD9-TUMOR_peak_9452 chr11 33270342 33270491 + 10.75855 NA Intergenic Intergenic -7802 NM_001278163 10114 Hs.201918 NM_005734 HPRD:05111 HIPK3 DYRK6|FIST3|PKY|YAK1 homeodomain interacting protein kinase 3 protein-coding 13-PTNLD9-TUMOR_peak_23699 chr19 3626783 3627232 + 10.75855 NA promoter-TSS (NM_001080543) promoter-TSS (NM_001080543) -194 NM_021231 58509 Hs.128425 NM_021231 ENSG00000105298 CACTIN C19orf29|NY-REN-24|fSAPc cactin, spliceosome C complex subunit protein-coding 13-PTNLD9-TUMOR_peak_4113 chr1 160916861 160917253 + 10.75855 NA intron (NM_080878, intron 7 of 7) LTR5B|LTR|ERVK 7532 NM_080878 142683 Hs.385631 NM_080878 HPRD:17166 ITLN2 HL-2|HL2 intelectin 2 protein-coding 13-PTNLD9-TUMOR_peak_39253 chr4 123588083 123588284 + 10.75855 NA intron (NR_104126, intron 10 of 10) intron (NR_104126, intron 10 of 10) -45971 NM_021803 59067 Hs.567559 NM_021803 HPRD:05650 IL21 CVID11|IL-21|Za11 interleukin 21 protein-coding 13-PTNLD9-TUMOR_peak_39077 chr4 111208392 111208566 + 10.75855 NA Intergenic L2a|LINE|L2 -88659 NM_024090 79071 Hs.412939 NM_024090 HPRD:13269 ELOVL6 FACE|FAE|LCE ELOVL fatty acid elongase 6 protein-coding 13-PTNLD9-TUMOR_peak_21510 chr17 49780920 49781301 + 10.75855 NA intron (NM_001082533, intron 5 of 9) X2_LINE|LINE|CR1 367034 NR_122104 440446 Hs.626751 NR_122104 HPRD:13466 LOC440446 - uncharacterized LOC440446 ncRNA 13-PTNLD9-TUMOR_peak_5111 chr1 203643342 203643608 + 10.75855 NA intron (NM_001684, intron 1 of 20) intron (NM_001684, intron 1 of 20) 47560 NM_001684 493 Hs.343522 NM_001684 HPRD:00159 ATP2B4 ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x ATPase, Ca++ transporting, plasma membrane 4 protein-coding 13-PTNLD9-TUMOR_peak_14909 chr13 80055935 80056094 + 10.75855 NA promoter-TSS (NR_046685) promoter-TSS (NR_046685) -648 NR_046685 100874208 Hs.602801 NR_046685 ENSG00000232132 NDFIP2-AS1 - NDFIP2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_37239 chr3 191751094 191751330 + 10.75855 NA Intergenic LTR16A|LTR|ERVL -205207 NR_046596 100873986 Hs.581652 NR_046596 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_25543 chr19 52873061 52873221 + 10.75855 NA promoter-TSS (NM_001145434) promoter-TSS (NM_001145434) -29 NM_001145434 400713 Hs.502314 NM_001145434 ENSG00000221923 ZNF880 - zinc finger protein 880 protein-coding 13-PTNLD9-TUMOR_peak_44329 chr6 27794044 27794206 + 10.75720 NA Intergenic LTR5_Hs|LTR|ERVK 2222 NM_021968 8363 Hs.278483 NM_021968 HPRD:11917 HIST1H4J H4/e|H4F2iv|H4FE|dJ160A22.2 histone cluster 1, H4j protein-coding 13-PTNLD9-TUMOR_peak_30735 chr20 30196334 30196497 + 10.75575 NA Intergenic CpG 1426 NR_036161 100422904 NR_036161 miRBase:MI0014238 MIR3193 - microRNA 3193 ncRNA 13-PTNLD9-TUMOR_peak_43528 chr6 3391023 3391226 + 10.75260 NA intron (NR_104448, intron 3 of 11) intron (NR_104448, intron 3 of 11) 54123 NR_104448 63027 Hs.713588 NM_015482 HPRD:12904 SLC22A23 C6orf85 solute carrier family 22, member 23 protein-coding 13-PTNLD9-TUMOR_peak_22161 chr17 76347602 76348076 + 10.75024 NA Intergenic Intergenic 8321 NM_003955 9021 Hs.527973 NM_003955 HPRD:05006 SOCS3 ATOD4|CIS3|Cish3|SOCS-3|SSI-3|SSI3 suppressor of cytokine signaling 3 protein-coding 13-PTNLD9-TUMOR_peak_48815 chr7 108210917 108211089 + 10.75024 NA promoter-TSS (NM_001130475) promoter-TSS (NM_001130475) -791 NM_001287599 168451 Hs.707689 NM_182529 HPRD:15498 THAP5 - THAP domain containing 5 protein-coding 13-PTNLD9-TUMOR_peak_8789 chr11 1568332 1568639 + 10.75024 NA Intergenic CpG 24665 NM_004420 1850 Hs.41688 NM_004420 HPRD:03617 DUSP8 C11orf81|HB5|HVH-5|HVH8 dual specificity phosphatase 8 protein-coding 13-PTNLD9-TUMOR_peak_5736 chr1 228773883 228774036 + 10.74346 NA Intergenic CpG -6435 NR_037962 58480 Hs.647774 NM_021205 HPRD:06965 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 13-PTNLD9-TUMOR_peak_41027 chr5 61529355 61529493 + 10.74163 NA Intergenic Intergenic -72565 NM_001243953 3796 Hs.558351 NM_004520 KIF2A CDCBM3|HK2|KIF2 kinesin heavy chain member 2A protein-coding 13-PTNLD9-TUMOR_peak_27766 chr2 98206693 98207077 + 10.74163 NA promoter-TSS (NM_025190) promoter-TSS (NM_025190) -457 NM_025190 57730 Hs.532921 NM_020970 ANKRD36B KIAA1641 ankyrin repeat domain 36B protein-coding 13-PTNLD9-TUMOR_peak_9571 chr11 36796865 36797014 + 10.74163 NA Intergenic Intergenic -177110 NM_001243786 5897 Hs.714519 NM_000536 HPRD:08913 RAG2 RAG-2 recombination activating gene 2 protein-coding 13-PTNLD9-TUMOR_peak_42532 chr5 147326104 147326240 + 10.74163 NA Intergenic L1PA3|LINE|L1 -40071 NM_206966 389336 Hs.660038 NM_206966 HPRD:14491 C5orf46 SSSP1 chromosome 5 open reading frame 46 protein-coding 13-PTNLD9-TUMOR_peak_39881 chr4 174529795 174530144 + 10.73820 NA Intergenic L1PA4|LINE|L1 78360 NR_003679 79804 Hs.61435 NR_003679 ENSG00000237125 HAND2-AS1 DEIN|NBLA00301 HAND2 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_12919 chr12 54432733 54432892 + 10.73820 NA intron (NM_014620, intron 1 of 3) intron (NM_014620, intron 1 of 3) 5078 NR_030753 693200 NR_030753 MIR615 MIRN615|hsa-mir-615 microRNA 615 ncRNA 13-PTNLD9-TUMOR_peak_45341 chr6 53590728 53590930 + 10.73820 NA Intergenic Intergenic -60323 NM_001003760 401265 Hs.131064 NM_001003760 HPRD:13923 KLHL31 BKLHD6|KBTBD1|KLHL|bA345L23.2 kelch-like family member 31 protein-coding 13-PTNLD9-TUMOR_peak_15051 chr13 104535553 104535828 + 10.73820 NA Intergenic Intergenic -600842 NR_049840 100847092 NR_049840 MIR548AS - microRNA 548as ncRNA 13-PTNLD9-TUMOR_peak_47139 chr7 28973013 28973195 + 10.73820 NA Intergenic Intergenic 24925 NM_014817 9865 Hs.744120 NM_014817 TRIL - TLR4 interactor with leucine-rich repeats protein-coding 13-PTNLD9-TUMOR_peak_20828 chr17 30115262 30115570 + 10.73820 NA Intergenic Intergenic 70910 NM_018405 55352 Hs.462729 NM_018405 HPRD:13675 COPRS C17orf79|COPR5|HSA272196|TTP1 coordinator of PRMT5, differentiation stimulator protein-coding 13-PTNLD9-TUMOR_peak_35199 chr3 100633143 100633496 + 10.73820 NA intron (NM_015429, intron 2 of 34) intron (NM_015429, intron 2 of 34) 79015 NM_015429 25890 Hs.477015 NM_015429 HPRD:09380 ABI3BP NESHBP|TARSH ABI family, member 3 (NESH) binding protein protein-coding 13-PTNLD9-TUMOR_peak_26437 chr2 28806951 28807124 + 10.73820 NA intron (NM_001170585, intron 24 of 56) L2b|LINE|L2 88099 NM_153021 151056 Hs.444933 NM_153021 HPRD:15141 PLB1 PLB|PLB/LIP|hPLB phospholipase B1 protein-coding 13-PTNLD9-TUMOR_peak_43327 chr5 179894143 179894454 + 10.73820 NA Intergenic Intergenic -27119 NM_015455 57472 Hs.608380 NM_015455 HPRD:12341 CNOT6 CCR4|Ccr4a CCR4-NOT transcription complex, subunit 6 protein-coding 13-PTNLD9-TUMOR_peak_51984 chr8 128707281 128707434 + 10.73820 NA Intergenic LTR16A1|LTR|ERVL 38856 NR_117101 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility candidate 11 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_44090 chr6 22026053 22026189 + 10.73820 NA intron (NR_015410, intron 7 of 11) intron (NR_015410, intron 7 of 11) 121301 NR_034143 729177 Hs.730673 NR_034143 ENSG00000260455 CASC14 - cancer susceptibility candidate 14 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_30258 chr20 1370418 1370617 + 10.73820 NA intron (NM_054014, intron 2 of 3) intron (NM_054014, intron 2 of 3) 3088 NR_106929 102465524 NR_106929 MIR6869 hsa-mir-6869 microRNA 6869 ncRNA 13-PTNLD9-TUMOR_peak_42542 chr5 147648210 147648407 + 10.73820 NA promoter-TSS (NM_001040129) promoter-TSS (NM_001040129) -115 NM_001040129 153218 Hs.483771 NM_001040129 ENSG00000214510 SPINK13 HBVDNAPTP1|HESPINTOR|LiESP6|SPINK5L3 serine peptidase inhibitor, Kazal type 13 (putative) protein-coding 13-PTNLD9-TUMOR_peak_27191 chr2 70006507 70006668 + 10.73820 NA intron (NM_001153, intron 1 of 12) intron (NM_001153, intron 1 of 12) 37460 NM_001153 307 Hs.422986 NM_001153 HPRD:00112 ANXA4 ANX4|HEL-S-274|PIG28|ZAP36 annexin A4 protein-coding 13-PTNLD9-TUMOR_peak_52837 chr9 18442763 18442879 + 10.73820 NA Intergenic Intergenic -31258 NM_052866 92949 Hs.741483 NM_052866 HPRD:16462 ADAMTSL1 ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN ADAMTS-like 1 protein-coding 13-PTNLD9-TUMOR_peak_2850 chr1 112084518 112084674 + 10.73820 NA intron (NM_001081976, intron 1 of 5) intron (NM_001081976, intron 1 of 5) 22001 NM_001081976 140 Hs.281342 NM_000677 HPRD:08984 ADORA3 A3AR|AD026|bA552M11.5 adenosine A3 receptor protein-coding 13-PTNLD9-TUMOR_peak_26059 chr2 9705626 9705792 + 10.73820 NA Intergenic Intergenic -9792 NM_003183 6868 Hs.404914 NM_003183 HPRD:04703 ADAM17 ADAM18|CD156B|CSVP|NISBD|TACE ADAM metallopeptidase domain 17 protein-coding 13-PTNLD9-TUMOR_peak_54391 chr9 111827666 111827863 + 10.73820 NA intron (NM_032012, intron 9 of 17) intron (NM_032012, intron 9 of 17) -19186 NR_029506 407036 NR_029506 MIR32 MIRN32|hsa-mir-32|miR-32|miRNA32 microRNA 32 ncRNA 13-PTNLD9-TUMOR_peak_37724 chr4 4668566 4668822 + 10.73820 NA intron (NR_037888, intron 4 of 5) intron (NR_037888, intron 4 of 5) 124836 NR_037888 100507266 Hs.276795 NR_037888 ENSG00000247708 STX18-AS1 - STX18 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_48370 chr7 95722914 95723079 + 10.73820 NA intron (NM_001278422, intron 15 of 15) intron (NM_001278422, intron 15 of 15) 126072 NR_030322 693176 NR_030322 MIR591 MIRN591|hsa-mir-591 microRNA 591 ncRNA 13-PTNLD9-TUMOR_peak_6097 chr1 243628088 243628393 + 10.73626 NA intron (NM_006642, intron 16 of 17) intron (NM_006642, intron 16 of 17) 118762 NR_039824 100616343 NR_039824 MIR4677 - microRNA 4677 ncRNA 13-PTNLD9-TUMOR_peak_29676 chr2 208199520 208199794 + 10.73626 NA Intergenic Intergenic -80617 NR_110283 101927865 Hs.574609 NR_110283 ENSG00000234902 LOC101927865 - uncharacterized LOC101927865 ncRNA 13-PTNLD9-TUMOR_peak_28728 chr2 152117926 152118482 + 10.73626 NA intron (NM_198557, intron 1 of 3) CpG 185 NM_198557 375287 Hs.302442 NM_198557 HPRD:10992 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 13-PTNLD9-TUMOR_peak_28331 chr2 122994112 122994370 + 10.73626 NA Intergenic Intergenic 481120 NR_048557 7247 Hs.75066 NM_004622 HPRD:08993 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 13-PTNLD9-TUMOR_peak_10559 chr11 72463640 72463924 + 10.73626 NA promoter-TSS (NM_001040118) promoter-TSS (NM_001040118) -348 NM_001040118 116985 Hs.503165 NM_015242 HPRD:09440 ARAP1 CENTD2 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1 protein-coding 13-PTNLD9-TUMOR_peak_1816 chr1 53879324 53879589 + 10.73305 NA Intergenic L2a|LINE|L2 26237 NR_002314 163742 Hs.99394 NR_002314 ENSG00000236253 SLC25A3P1 - solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_45389 chr6 56955137 56955398 + 10.73305 NA intron (NM_001257273, intron 1 of 3) CpG 439 NM_015555 26036 Hs.485628 NM_015555 HPRD:10332 ZNF451 COASTER|dJ417I1.1 zinc finger protein 451 protein-coding 13-PTNLD9-TUMOR_peak_16107 chr14 68946116 68946297 + 10.73305 NA intron (NM_133509, intron 10 of 10) MER39|LTR|ERV1 314425 NM_004926 677 Hs.85155 NM_004926 HPRD:03041 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein-like 1 protein-coding 13-PTNLD9-TUMOR_peak_18152 chr16 676902 677152 + 10.73305 NA intron (NM_001172663, intron 6 of 6) intron (NM_001172663, intron 6 of 6) -3985 NM_053284 117166 Hs.345818 NM_053284 HPRD:12153 WFIKKN1 C16orf12|RJD2|WFDC20A|WFIKKN WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_37328 chr3 194295984 194296201 + 10.72737 NA Intergenic LTR8|LTR|ERV1 -8905 NR_047574 100507297 Hs.586059 NR_047573 TMEM44-AS1 - TMEM44 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_36014 chr3 134092548 134092728 + 10.72346 NA intron (NM_001278683, intron 1 of 9) CpG 789 NM_001278685 51421 Hs.426312 NM_016201 HPRD:16485 AMOTL2 LCCP angiomotin like 2 protein-coding 13-PTNLD9-TUMOR_peak_53473 chr9 68377705 68377810 + 10.72321 NA Intergenic CpG 76618 NR_033907 642236 Hs.529357 NR_033907 LOC642236 - FSHD region gene 1 pseudogene pseudo 13-PTNLD9-TUMOR_peak_30808 chr20 32319765 32319890 + 10.72272 NA non-coding (NR_104259, exon 1 of 14) non-coding (NR_104259, exon 1 of 14) 261 NM_001282935 84905 Hs.516989 NM_032819 HPRD:15781 ZNF341 - zinc finger protein 341 protein-coding 13-PTNLD9-TUMOR_peak_7128 chr10 42816352 42816578 + 10.71911 NA Intergenic (CATTC)n|Satellite|Satellite 47028 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 13-PTNLD9-TUMOR_peak_48771 chr7 106482353 106482707 + 10.71506 NA Intergenic L2|LINE|L2 -23193 NM_001282426 5294 Hs.32942 NM_002649 HPRD:03135 PIK3CG PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma protein-coding 13-PTNLD9-TUMOR_peak_7368 chr10 52086812 52086980 + 10.71506 NA intron (NM_147156, intron 8 of 10) intron (NM_147156, intron 8 of 10) -78526 NM_001143974 56624 Hs.512645 NM_019893 ENSG00000188611 ASAH2 BCDase|HNAC1|LCDase|N-CDase|NCDase N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2 protein-coding 13-PTNLD9-TUMOR_peak_4461 chr1 174768859 174768998 + 10.71506 NA promoter-TSS (NM_001243765) promoter-TSS (NM_001243765) -107 NM_001243765 9910 Hs.585378 NM_014857 HPRD:16464 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1-like protein-coding 13-PTNLD9-TUMOR_peak_15784 chr14 53477785 53478078 + 10.71506 NA Intergenic Intergenic -60116 NM_006832 10979 Hs.509343 NM_006832 HPRD:06374 FERMT2 KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 fermitin family member 2 protein-coding 13-PTNLD9-TUMOR_peak_11341 chr11 117198405 117198695 + 10.71506 NA promoter-TSS (NM_014956) promoter-TSS (NM_014956) -21 NM_014956 22897 Hs.504009 NM_014956 HPRD:10854 CEP164 NPHP15 centrosomal protein 164kDa protein-coding 13-PTNLD9-TUMOR_peak_10753 chr11 78948812 78948978 + 10.71506 NA intron (NM_001098816, intron 2 of 33) Tigger15a|DNA|TcMar-Tigger 164258 NR_030598 100126333 NR_030598 miRBase:MI0005543 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 13-PTNLD9-TUMOR_peak_34266 chr3 38034269 38034472 + 10.71506 NA promoter-TSS (NM_015873) promoter-TSS (NM_015873) -708 NM_015873 50853 Hs.103665 NM_015873 HPRD:18283 VILL - villin-like protein-coding 13-PTNLD9-TUMOR_peak_38889 chr4 91048462 91048690 + 10.71506 NA promoter-TSS (NM_001145065) promoter-TSS (NM_001145065) -108 NM_001145065 401145 Hs.654735 NM_207491 HPRD:17561 CCSER1 FAM190A coiled-coil serine-rich protein 1 protein-coding 13-PTNLD9-TUMOR_peak_49980 chr8 6506412 6506916 + 10.71506 NA intron (NR_125386, intron 1 of 4) intron (NR_125386, intron 1 of 4) -26923 NR_107022 102465861 NR_107022 MIR8055 hsa-mir-8055 microRNA 8055 ncRNA 13-PTNLD9-TUMOR_peak_4804 chr1 187831690 187831939 + 10.71254 NA Intergenic Intergenic 1033782 NM_024420 5321 Hs.497200 NM_024420 HPRD:08986 PLA2G4A PLA2G4|cPLA2-alpha phospholipase A2, group IVA (cytosolic, calcium-dependent) protein-coding 13-PTNLD9-TUMOR_peak_55747 chrX 41301412 41301880 + 10.71254 NA Intergenic CpG -5067 NM_022567 60506 Hs.302019 NM_022567 HPRD:02232 NYX CLRP|CSNB1|CSNB1A|CSNB4|NBM1 nyctalopin protein-coding 13-PTNLD9-TUMOR_peak_42785 chr5 157078708 157078876 + 10.71254 NA exon (NM_178424, exon 1 of 5) exon (NM_178424, exon 1 of 5) 636 NM_007017 11063 Hs.744348 NM_007017 HPRD:09461 SOX30 - SRY (sex determining region Y)-box 30 protein-coding 13-PTNLD9-TUMOR_peak_11344 chr11 117390411 117390683 + 10.71254 NA intron (NM_020693, intron 6 of 32) AluJo|SINE|Alu 191976 NM_014956 22897 Hs.504009 NM_014956 HPRD:10854 CEP164 NPHP15 centrosomal protein 164kDa protein-coding 13-PTNLD9-TUMOR_peak_2880 chr1 113086755 113086893 + 10.71254 NA intron (NM_138728, intron 12 of 13) intron (NM_138728, intron 12 of 13) 35454 NM_024494 7482 Hs.258575 NM_004185 WNT2B WNT13 wingless-type MMTV integration site family, member 2B protein-coding 13-PTNLD9-TUMOR_peak_28822 chr2 158102983 158103215 + 10.71254 NA Intergenic Intergenic -11241 NM_014568 11227 Hs.269027 NM_014568 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 13-PTNLD9-TUMOR_peak_46280 chr6 150247422 150247546 + 10.71254 NA Intergenic L1M4|LINE|L1 -3270 NM_001001788 353091 Hs.558792 NM_001001788 HPRD:16467 RAET1G ULBP5 retinoic acid early transcript 1G protein-coding 13-PTNLD9-TUMOR_peak_11635 chr11 129716889 129717133 + 10.71254 NA intron (NM_138788, intron 1 of 5) intron (NM_138788, intron 1 of 5) 31270 NM_138788 120224 Hs.504301 NM_138788 HPRD:14020 TMEM45B - transmembrane protein 45B protein-coding 13-PTNLD9-TUMOR_peak_47807 chr7 69942098 69942383 + 10.71254 NA intron (NM_001127231, intron 5 of 17) intron (NM_001127231, intron 5 of 17) -655283 NM_022479 64409 Hs.488591 NM_022479 HPRD:15655 WBSCR17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T5L Williams-Beuren syndrome chromosome region 17 protein-coding 13-PTNLD9-TUMOR_peak_29663 chr2 207779992 207780131 + 10.71254 NA Intergenic LTR40a|LTR|ERVL -24217 NM_173077 130749 Hs.684103 NM_173077 HPRD:07098 CPO - carboxypeptidase O protein-coding 13-PTNLD9-TUMOR_peak_46203 chr6 144585502 144585709 + 10.71254 NA Intergenic Intergenic -27268 NM_007124 7402 Hs.133135 NM_007124 HPRD:00547 UTRN DMDL|DRP|DRP1 utrophin protein-coding 13-PTNLD9-TUMOR_peak_26701 chr2 43196956 43197095 + 10.71254 NA Intergenic Intergenic 69657 NR_110585 102723854 Hs.570165 NR_110585 LOC102723854 - uncharacterized LOC102723854 ncRNA 13-PTNLD9-TUMOR_peak_48352 chr7 94734134 94734323 + 10.71254 NA intron (NM_017650, intron 2 of 15) intron (NM_017650, intron 2 of 15) 195018 NM_001166161 55607 Hs.21816 NM_017650 ENSG00000158528 PPP1R9A NRB1|NRBI|Neurabin-I protein phosphatase 1, regulatory subunit 9A protein-coding 13-PTNLD9-TUMOR_peak_46928 chr7 16460576 16460972 + 10.70889 NA exon (NM_001101426, exon 1 of 10) exon (NM_001101426, exon 1 of 10) 173 NM_001101426 729920 Hs.636502 NM_001101417 ISPD MDDGA7|Nip|hCG_1745121 isoprenoid synthase domain containing protein-coding 13-PTNLD9-TUMOR_peak_53432 chr9 66835798 66835917 + 10.70329 NA Intergenic ALR/Alpha|Satellite|centr -87110 NR_121570 101928381 Hs.708686 NR_121570 LOC101928381 - uncharacterized LOC101928381 ncRNA 13-PTNLD9-TUMOR_peak_25011 chr19 41283408 41283575 + 10.70182 NA promoter-TSS (NR_037791) promoter-TSS (NR_037791) -633 NM_016154 53916 Hs.631539 NM_016154 HPRD:11473 RAB4B - RAB4B, member RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_24062 chr19 12750979 12751181 + 10.69696 NA Intergenic CpG 26511 NM_001173498 4125 Hs.356769 NM_000528 HPRD:02007 MAN2B1 LAMAN|MANB mannosidase, alpha, class 2B, member 1 protein-coding 13-PTNLD9-TUMOR_peak_37321 chr3 194242319 194242555 + 10.69696 NA Intergenic L1MC4a|LINE|L1 34568 NR_033929 401106 Hs.407087 NR_033929 LINC00884 - long intergenic non-protein coding RNA 884 ncRNA 13-PTNLD9-TUMOR_peak_31231 chr20 44844679 44844818 + 10.69696 NA intron (NM_021248, intron 5 of 11) intron (NM_021248, intron 5 of 11) 92389 NM_021248 64405 Hs.472861 NM_021248 HPRD:13018 CDH22 C20orf25|dJ998H6.1 cadherin 22, type 2 protein-coding 13-PTNLD9-TUMOR_peak_45133 chr6 44083740 44083871 + 10.69696 NA intron (NM_032111, intron 2 of 2) intron (NM_032111, intron 2 of 2) 11386 NM_032111 64928 Hs.311190 NM_032111 HPRD:14741 MRPL14 L14mt|L32mt|MRP-L14|MRP-L32|MRPL32|RMPL32|RPML32 mitochondrial ribosomal protein L14 protein-coding 13-PTNLD9-TUMOR_peak_42611 chr5 149401452 149401650 + 10.69696 NA intron (NM_014983, intron 6 of 19) intron (NM_014983, intron 6 of 19) -20821 NM_030953 81789 Hs.169333 NM_030953 HPRD:18190 TIGD6 - tigger transposable element derived 6 protein-coding 13-PTNLD9-TUMOR_peak_36407 chr3 151063774 151063898 + 10.69696 NA intron (NM_022788, intron 1 of 2) intron (NM_022788, intron 1 of 2) -5193 NM_176876 64805 Hs.591281 NM_022788 P2RY12 ADPG-R|BDPLT8|HORK3|P2T(AC)|P2Y(12)R|P2Y(AC)|P2Y(ADP)|P2Y(cyc)|P2Y12|SP1999 purinergic receptor P2Y, G-protein coupled, 12 protein-coding 13-PTNLD9-TUMOR_peak_522 chr1 16481580 16481728 + 10.69696 NA intron (NM_004431, intron 1 of 16) CpG 928 NM_004431 1969 Hs.171596 NM_004431 HPRD:01494 EPHA2 ARCC2|CTPA|CTPP1|CTRCT6|ECK EPH receptor A2 protein-coding 13-PTNLD9-TUMOR_peak_28600 chr2 139179508 139179794 + 10.69696 NA Intergenic Intergenic -79699 NM_001001664 339745 Hs.333297 NM_001001664 HPRD:11261 SPOPL BTBD33 speckle-type POZ protein-like protein-coding 13-PTNLD9-TUMOR_peak_4537 chr1 178313711 178314193 + 10.69696 NA intron (NM_004841, intron 1 of 15) intron (NM_004841, intron 1 of 15) 3346 NM_004841 9462 Hs.496139 NM_004841 HPRD:05845 RASAL2 NGAP RAS protein activator like 2 protein-coding 13-PTNLD9-TUMOR_peak_9303 chr11 20382272 20382512 + 10.69696 NA Intergenic MLT1J|LTR|ERVL-MaLR -2839 NM_006410 10553 Hs.90753 NM_006410 HPRD:09288 HTATIP2 CC3|SDR44U1|TIP30 HIV-1 Tat interactive protein 2, 30kDa protein-coding 13-PTNLD9-TUMOR_peak_25622 chr19 54481457 54481848 + 10.69682 NA intron (NM_031895, intron 2 of 3) CpG -3909 NR_030632 100126325 NR_030632 MIR935 MIRN935|hsa-mir-935 microRNA 935 ncRNA 13-PTNLD9-TUMOR_peak_11947 chr12 6277058 6277241 + 10.69443 NA Intergenic MIR|SINE|MIR -32333 NM_001769 928 Hs.114286 NM_001769 HPRD:00880 CD9 BTCC-1|DRAP-27|MIC3|MRP-1|TSPAN-29|TSPAN29 CD9 molecule protein-coding 13-PTNLD9-TUMOR_peak_15210 chr14 19682979 19683132 + 10.68522 NA intron (NR_110526, intron 7 of 7).2 intron (NR_110526, intron 7 of 7).2 -2039 NR_073459 414763 Hs.617315 NR_073459 ENSG00000215394 BMS1P18 C14orf17|LINC00516 BMS1 pseudogene 18 pseudo 13-PTNLD9-TUMOR_peak_5891 chr1 234462425 234462602 + 10.68509 NA Intergenic Intergenic 20300 NR_039818 100616380 NR_039818 MIR4671 - microRNA 4671 ncRNA 13-PTNLD9-TUMOR_peak_11467 chr11 122621997 122622204 + 10.68509 NA intron (NM_032873, intron 1 of 13) intron (NM_032873, intron 1 of 13) -87155 NM_019604 56253 Hs.159523 NM_019604 HPRD:16760 CRTAM CD355 cytotoxic and regulatory T cell molecule protein-coding 13-PTNLD9-TUMOR_peak_43105 chr5 173846603 173846794 + 10.68509 NA intron (NR_125806, intron 1 of 5) intron (NR_125806, intron 1 of 5) 83341 NR_125806 101928176 Hs.436014 NR_125806 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 13-PTNLD9-TUMOR_peak_50405 chr8 26453139 26453368 + 10.68509 NA intron (NM_001197293, intron 3 of 13) intron (NM_001197293, intron 3 of 13) 17332 NM_001244604 1808 Hs.593187 NM_001386 HPRD:03914 DPYSL2 CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2 dihydropyrimidinase-like 2 protein-coding 13-PTNLD9-TUMOR_peak_19424 chr16 57023345 57023734 + 10.68509 NA Intergenic CpG -27447 NM_032206 84166 Hs.528836 NM_032206 HPRD:14831 NLRC5 CLR16.1|NOD27|NOD4 NLR family, CARD domain containing 5 protein-coding 13-PTNLD9-TUMOR_peak_53958 chr9 93106269 93106690 + 10.68509 NA intron (NR_109795, intron 2 of 2) intron (NR_109795, intron 2 of 2) 89292 NR_109795 101927873 Hs.598482 NR_109795 LINC01508 - long intergenic non-protein coding RNA 1508 ncRNA 13-PTNLD9-TUMOR_peak_1967 chr1 59953110 59953335 + 10.68509 NA intron (NM_001113411, intron 6 of 16) intron (NM_001113411, intron 6 of 16) -28079 NM_001278224 55277 Hs.444301 NM_018291 HPRD:07721 FGGY - FGGY carbohydrate kinase domain containing protein-coding 13-PTNLD9-TUMOR_peak_2282 chr1 82825315 82825519 + 10.68509 NA Intergenic HERVH-int|LTR|ERV1 559335 NM_012302 23266 Hs.24212 NM_012302 HPRD:06116 LPHN2 CIRL2|CL2|LEC1|LPHH1 latrophilin 2 protein-coding 13-PTNLD9-TUMOR_peak_23016 chr18 42313459 42313593 + 10.68509 NA intron (NM_001130110, intron 2 of 3) intron (NM_001130110, intron 2 of 3) 52663 NM_015559 26040 Hs.435458 NM_015559 HPRD:10224 SETBP1 SEB SET binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_27464 chr2 86161286 86161439 + 10.68509 NA Intergenic LTR64|LTR|ERV1 44959 NR_110569 101928113 Hs.625888 NR_110569 ST3GAL5-AS1 - ST3GAL5 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_41628 chr5 100614112 100614352 + 10.68509 NA Intergenic Intergenic -375243 NM_175052 7903 Hs.308628 NM_005668 HPRD:03970 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 13-PTNLD9-TUMOR_peak_5518 chr1 223656231 223656444 + 10.68509 NA Intergenic MIR|SINE|MIR 89622 NM_152610 164127 Hs.192090 NM_152610 HPRD:08761 CCDC185 C1orf65 coiled-coil domain containing 185 protein-coding 13-PTNLD9-TUMOR_peak_52954 chr9 27117779 27118006 + 10.68509 NA intron (NM_001290078, intron 1 of 20) intron (NM_001290078, intron 1 of 20) 8753 NM_001290078 7010 Hs.89640 NM_000459 HPRD:02571 TEK CD202B|TIE-2|TIE2|VMCM|VMCM1 TEK tyrosine kinase, endothelial protein-coding 13-PTNLD9-TUMOR_peak_11213 chr11 111993838 111994057 + 10.68509 NA Intergenic MER67C|LTR|ERV1 36399 NM_001276506 6392 Hs.356270 NM_003002 HPRD:04069 SDHD CBT1|CII-4|CWS3|PGL|PGL1|QPs3|SDH4|cybS succinate dehydrogenase complex, subunit D, integral membrane protein protein-coding 13-PTNLD9-TUMOR_peak_16121 chr14 69154546 69154724 + 10.67563 NA Intergenic L1MC4a|LINE|L1 105996 NM_004926 677 Hs.85155 NM_004926 HPRD:03041 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein-like 1 protein-coding 13-PTNLD9-TUMOR_peak_21066 chr17 39956987 39957367 + 10.67563 NA Intergenic Intergenic 11274 NM_006455 10609 Hs.446459 NM_006455 HPRD:10126 LEPREL4 NO55|NOL55|SC65 leprecan-like 4 protein-coding 13-PTNLD9-TUMOR_peak_44341 chr6 27870612 27871067 + 10.67563 NA Intergenic Intergenic 9335 NM_033057 81697 Hs.307111 NM_033057 HPRD:17695 OR2B2 OR2B2Q|OR2B9|OR6-1|dJ193B12.4|hs6M1-10 olfactory receptor, family 2, subfamily B, member 2 protein-coding 13-PTNLD9-TUMOR_peak_10233 chr11 65327540 65327792 + 10.67563 NA Intergenic L2c|LINE|L2 -1967 NM_021070 4054 Hs.289019 NM_021070 HPRD:03649 LTBP3 LTBP-3|LTBP2|STHAG6|pp6425 latent transforming growth factor beta binding protein 3 protein-coding 13-PTNLD9-TUMOR_peak_14028 chr12 120669171 120669460 + 10.67408 NA intron (NM_001243756, intron 1 of 10) intron (NM_001243756, intron 1 of 10) 18649 NM_025157 5829 Hs.446336 NM_002859 ENSG00000089159 PXN - paxillin protein-coding 13-PTNLD9-TUMOR_peak_23960 chr19 10812029 10812306 + 10.67233 NA promoter-TSS (NM_031209) promoter-TSS (NM_031209) 55 NM_031209 81890 Hs.631638 NM_031209 HPRD:17943 QTRT1 FP3235|TGT|TGUT queuine tRNA-ribosyltransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_34614 chr3 50664941 50665113 + 10.67233 NA intron (NM_001243925, intron 2 of 10) intron (NM_001243925, intron 2 of 10) 10465 NM_001243925 7867 Hs.234521 NM_004635 HPRD:03678 MAPKAPK3 3PK|MAPKAP-K3|MAPKAP3|MAPKAPK-3|MK-3 mitogen-activated protein kinase-activated protein kinase 3 protein-coding 13-PTNLD9-TUMOR_peak_42676 chr5 150603295 150603797 + 10.67233 NA 5' UTR (NM_015621, exon 1 of 9) 5' UTR (NM_015621, exon 1 of 9) 108 NM_015621 26112 Hs.655336 NM_015621 HPRD:13152 CCDC69 - coiled-coil domain containing 69 protein-coding 13-PTNLD9-TUMOR_peak_48422 chr7 98048347 98048460 + 10.67233 NA Intergenic Intergenic -17976 NM_018842 55971 Hs.656063 NM_018842 HPRD:11270 BAIAP2L1 IRTKS BAI1-associated protein 2-like 1 protein-coding 13-PTNLD9-TUMOR_peak_55805 chrX 47521736 47521908 + 10.67233 NA Intergenic Intergenic -3243 NM_004182 8409 Hs.172791 NM_004182 HPRD:02209 UXT ART-27|STAP1 ubiquitously-expressed, prefoldin-like chaperone protein-coding 13-PTNLD9-TUMOR_peak_9595 chr11 40350791 40351116 + 10.67233 NA intron (NM_001258419, intron 3 of 6) L3|LINE|CR1 -36273 NR_047673 57689 Hs.745123 NM_020929 HPRD:12303 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 13-PTNLD9-TUMOR_peak_47291 chr7 41188254 41188535 + 10.67233 NA Intergenic Intergenic 47192 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 13-PTNLD9-TUMOR_peak_29703 chr2 209234496 209234781 + 10.67233 NA intron (NR_073601, intron 1 of 12) MER34-int|LTR|ERV1 10069 NR_073601 5746 Hs.570296 NM_005048 HPRD:03276 PTH2R PTHR2 parathyroid hormone 2 receptor protein-coding 13-PTNLD9-TUMOR_peak_20825 chr17 29908124 29908318 + 10.67233 NA Intergenic Intergenic 5791 NR_029856 100126356 NR_029856 miRBase:MI0000769 MIR365B MIR365-2|MIRN365-2|hsa-mir-365b microRNA 365b ncRNA 13-PTNLD9-TUMOR_peak_6700 chr10 24646743 24646886 + 10.67233 NA intron (NM_001282767, intron 2 of 18) intron (NM_001282767, intron 2 of 18) 82200 NR_030334 693188 NR_030334 MIR603 MIRN603|hsa-mir-603 microRNA 603 ncRNA 13-PTNLD9-TUMOR_peak_27845 chr2 101681423 101681538 + 10.67233 NA intron (NM_001102426, intron 2 of 19) intron (NM_001102426, intron 2 of 19) 62789 NM_001098577 6160 Hs.469473 NM_000993 HPRD:17994 RPL31 L31 ribosomal protein L31 protein-coding 13-PTNLD9-TUMOR_peak_10153 chr11 64099266 64099681 + 10.66965 NA Intergenic Intergenic -8217 NM_032251 283234 Hs.98564 NM_032251 HPRD:10986 CCDC88B BRLZ|CCDC88|HKRP3|gipie coiled-coil domain containing 88B protein-coding 13-PTNLD9-TUMOR_peak_45654 chr6 86353466 86353965 + 10.66965 NA promoter-TSS (NM_001159677) promoter-TSS (NM_001159677) -672 NM_006372 10492 Hs.571177 NM_006372 HPRD:06734 SYNCRIP GRY-RBP|GRYRBP|HNRNPQ|HNRPQ1|NSAP1|PP68|hnRNP-Q synaptotagmin binding, cytoplasmic RNA interacting protein protein-coding 13-PTNLD9-TUMOR_peak_14182 chr12 123850127 123850469 + 10.66656 NA promoter-TSS (NR_107039) promoter-TSS (NR_107039) -908 NR_107039 102466877 NR_107039 MIR8072 hsa-mir-8072 microRNA 8072 ncRNA 13-PTNLD9-TUMOR_peak_33864 chr3 13895508 13895622 + 10.66656 NA intron (NM_004625, intron 3 of 3) intron (NM_004625, intron 3 of 3) 26053 NM_004625 7476 Hs.72290 NM_004625 WNT7A - wingless-type MMTV integration site family, member 7A protein-coding 13-PTNLD9-TUMOR_peak_16195 chr14 71107780 71108052 + 10.66526 NA promoter-TSS (NM_015351) promoter-TSS (NM_015351) 99 NR_110071 101928075 Hs.737532 NR_110071 ENSG00000245466 LOC101928075 - uncharacterized LOC101928075 ncRNA 13-PTNLD9-TUMOR_peak_5115 chr1 203720187 203720541 + 10.66526 NA Intergenic Intergenic -13920 NM_017773 54900 Hs.272794 NM_017773 HPRD:08312 LAX1 LAX lymphocyte transmembrane adaptor 1 protein-coding 13-PTNLD9-TUMOR_peak_17102 chr15 41158110 41158413 + 10.66526 NA Intergenic Intergenic 8226 NM_133639 171177 Hs.447901 NM_133639 HPRD:10191 RHOV ARHV|CHP|WRCH2 ras homolog family member V protein-coding 13-PTNLD9-TUMOR_peak_35443 chr3 114964401 114964569 + 10.66526 NA Intergenic Intergenic -98358 NM_015642 26137 Hs.202577 NM_015642 HPRD:05822 ZBTB20 DPZF|HOF|ODA-8S|ZNF288 zinc finger and BTB domain containing 20 protein-coding 13-PTNLD9-TUMOR_peak_40919 chr5 55816832 55816939 + 10.66526 NA intron (NM_001287053, intron 4 of 5) intron (NM_001287053, intron 4 of 5) -39289 NR_104664 102467147 Hs.650177 NR_104664 LOC102467147 - uncharacterized LOC102467147 ncRNA 13-PTNLD9-TUMOR_peak_56529 chrX 134186139 134186462 + 10.66526 NA promoter-TSS (NM_001134321) promoter-TSS (NM_001134321) -79 NM_001134321 26071 Hs.460924 NM_015582 HPRD:06485 FAM127B CXX1b|MAR8A family with sequence similarity 127, member B protein-coding 13-PTNLD9-TUMOR_peak_4046 chr1 159568000 159568328 + 10.66526 NA Intergenic Intergenic 10548 NM_001639 325 Hs.507080 NM_001639 HPRD:00101 APCS HEL-S-92n|PTX2|SAP amyloid P component, serum protein-coding 13-PTNLD9-TUMOR_peak_6054 chr1 240388633 240388825 + 10.66526 NA intron (NM_020066, intron 6 of 17) intron (NM_020066, intron 6 of 17) 133544 NM_020066 56776 Hs.24889 NM_020066 HPRD:10449 FMN2 - formin 2 protein-coding 13-PTNLD9-TUMOR_peak_20806 chr17 28927360 28927549 + 10.66526 NA intron (NR_015341, intron 2 of 8) CpG -23882 NR_033420 6459 Hs.684860 NR_033420 SH3GL1P2 CNSA-P2|SH3GLP2 SH3-domain GRB2-like 1 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_27780 chr2 98795667 98796052 + 10.66526 NA intron (NM_144992, intron 8 of 27) intron (NM_144992, intron 8 of 27) 92264 NM_144992 200403 Hs.269977 NM_144992 HPRD:14510 VWA3B - von Willebrand factor A domain containing 3B protein-coding 13-PTNLD9-TUMOR_peak_13344 chr12 72351897 72352055 + 10.66526 NA intron (NM_173353, intron 5 of 10) intron (NM_173353, intron 5 of 10) 19350 NM_173353 121278 Hs.736576 NM_173353 HPRD:09594 TPH2 ADHD7|NTPH tryptophan hydroxylase 2 protein-coding 13-PTNLD9-TUMOR_peak_6743 chr10 26973732 26973841 + 10.66526 NA Intergenic L2c|LINE|L2 -12809 NM_014317 23590 Hs.558468 NM_014317 HPRD:09591 PDSS1 COQ1|COQ10D2|DPS|SPS|TPRT|TPT|TPT 1|hDPS1 prenyl (decaprenyl) diphosphate synthase, subunit 1 protein-coding 13-PTNLD9-TUMOR_peak_23286 chr18 55907289 55907460 + 10.66526 NA intron (NM_001144971, intron 3 of 30) intron (NM_001144971, intron 3 of 30) 18620 NM_001144966 23327 Hs.185677 NM_015277 HPRD:05903 NEDD4L NEDD4-2|NEDD4.2|RSP5|hNEDD4-2 neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_49090 chr7 130626381 130626546 + 10.66179 NA TTS (NR_109855) TTS (NR_109855) 28240 NR_109780 100506860 Hs.635013 NR_109780 LOC100506860 - uncharacterized LOC100506860 ncRNA 13-PTNLD9-TUMOR_peak_9263 chr11 19218056 19218384 + 10.66179 NA intron (NM_003476, intron 2 of 6) intron (NM_003476, intron 2 of 6) 13898 NM_003476 8048 Hs.83577 NM_003476 HPRD:07525 CSRP3 CLP|CMD1M|CMH12|CRP3|LMO4|MLP cysteine and glycine-rich protein 3 (cardiac LIM protein) protein-coding 13-PTNLD9-TUMOR_peak_43661 chr6 7051159 7051362 + 10.66179 NA Intergenic Intergenic -56570 NM_001168344 6239 Hs.298248 NM_002955 HPRD:03733 RREB1 FINB|HNT|LZ321|RREB-1|Zep-1 ras responsive element binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_11214 chr11 111999284 111999744 + 10.66179 NA Intergenic Intergenic 35326 NM_001243211 3606 Hs.83077 NM_001562 HPRD:02976 IL18 IGIF|IL-18|IL-1g|IL1F4 interleukin 18 protein-coding 13-PTNLD9-TUMOR_peak_31823 chr20 62372275 62372674 + 10.66179 NA intron (NM_020062, intron 2 of 7) intron (NM_020062, intron 2 of 7) 1263 NM_020062 56731 Hs.435126 NM_020062 SLC2A4RG GEF|HDBP-1|HDBP1|Si-1-2|Si-1-2-19 SLC2A4 regulator protein-coding 13-PTNLD9-TUMOR_peak_7214 chr10 46520322 46520560 + 10.65881 NA Intergenic L2|LINE|L2 99617 NM_001042357 26095 Hs.440733 NM_015605 HPRD:10898 PTPN20B CT126|PTPN20A|bA142I17.1|bA42B19.1|hPTPN20 protein tyrosine phosphatase, non-receptor type 20B protein-coding 13-PTNLD9-TUMOR_peak_4954 chr1 201405184 201405338 + 10.65881 NA Intergenic Intergenic -14387 NM_003281 7135 Hs.320890 NM_003281 HPRD:01842 TNNI1 SSTNI|TNN1 troponin I type 1 (skeletal, slow) protein-coding 13-PTNLD9-TUMOR_peak_33288 chr22 39610544 39610680 + 10.65881 NA Intergenic Intergenic 26302 NM_033016 5155 Hs.1976 NM_002608 HPRD:01815 PDGFB IBGC5|PDGF-2|PDGF2|SIS|SSV|c-sis platelet-derived growth factor beta polypeptide protein-coding 13-PTNLD9-TUMOR_peak_17595 chr15 72084988 72085121 + 10.65881 NA Intergenic Intergenic -17834 NM_014249 10002 Hs.187354 NM_014249 NR2E3 ESCS|PNR|RNR|RP37|rd7 nuclear receptor subfamily 2, group E, member 3 protein-coding 13-PTNLD9-TUMOR_peak_51726 chr8 119963856 119964639 + 10.65881 NA 5' UTR (NM_002546, exon 1 of 5) 5' UTR (NM_002546, exon 1 of 5) 136 NM_002546 4982 Hs.81791 NM_002546 HPRD:04032 TNFRSF11B OCIF|OPG|TR1 tumor necrosis factor receptor superfamily, member 11b protein-coding 13-PTNLD9-TUMOR_peak_47360 chr7 44526401 44526595 + 10.65881 NA intron (NM_015332, intron 1 of 5) MIR3|SINE|MIR 3887 NM_015332 23386 Hs.488171 NM_015332 NUDCD3 NudCL NudC domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_15969 chr14 62035321 62035448 + 10.64286 NA intron (NR_110417, intron 1 of 3) intron (NR_110417, intron 1 of 3) 1528 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LOC101927780 - uncharacterized LOC101927780 ncRNA 13-PTNLD9-TUMOR_peak_18528 chr16 11706259 11706445 + 10.64286 NA Intergenic Intergenic -25030 NR_024320 9516 Hs.459940 NM_004862 HPRD:10354 LITAF PIG7|SIMPLE|TP53I7 lipopolysaccharide-induced TNF factor protein-coding 13-PTNLD9-TUMOR_peak_33783 chr3 11812530 11812801 + 10.64286 NA Intergenic Intergenic -50423 NM_014667 9686 Hs.740389 NM_014667 HPRD:11672 VGLL4 VGL-4 vestigial-like family member 4 protein-coding 13-PTNLD9-TUMOR_peak_43845 chr6 13361385 13361650 + 10.64286 NA Intergenic Intergenic -32702 NM_001258457 51256 Hs.484678 NM_016495 HPRD:18165 TBC1D7 MGCPH|PIG51|TBC7 TBC1 domain family, member 7 protein-coding 13-PTNLD9-TUMOR_peak_11441 chr11 121337358 121337598 + 10.63769 NA intron (NM_003105, intron 1 of 47) intron (NM_003105, intron 1 of 47) 14566 NM_003105 6653 Hs.368592 NM_003105 HPRD:03595 SORL1 C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250 sortilin-related receptor, L(DLR class) A repeats containing protein-coding 13-PTNLD9-TUMOR_peak_15554 chr14 35807080 35807350 + 10.63699 NA Intergenic MIRb|SINE|MIR 45692 NM_002791 5687 Hs.446260 NM_002791 HPRD:04171 PSMA6 IOTA|PROS27|p27K proteasome (prosome, macropain) subunit, alpha type, 6 protein-coding 13-PTNLD9-TUMOR_peak_29387 chr2 192419921 192420082 + 10.63197 NA Intergenic Intergenic -122797 NM_001254736 64859 Hs.591610 NM_022837 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_11851 chr12 3346142 3346260 + 10.63197 NA intron (NM_006675, intron 3 of 8) L2b|LINE|L2 -144314 NM_001256536 56341 Hs.504530 NM_019854 HPRD:11029 PRMT8 HRMT1L3|HRMT1L4 protein arginine methyltransferase 8 protein-coding 13-PTNLD9-TUMOR_peak_15035 chr13 102108336 102108476 + 10.63197 NA intron (NM_001271755, intron 2 of 9) intron (NM_001271755, intron 2 of 9) 3462 NM_001271755 9358 Hs.696554 NM_004791 HPRD:07253 ITGBL1 OSCP|TIED integrin, beta-like 1 (with EGF-like repeat domains) protein-coding 13-PTNLD9-TUMOR_peak_51288 chr8 91683211 91683413 + 10.63197 NA Intergenic Intergenic -25179 NM_001008495 169200 Hs.567759 NM_001008495 HPRD:16822 TMEM64 - transmembrane protein 64 protein-coding 13-PTNLD9-TUMOR_peak_6957 chr10 37014554 37014793 + 10.63197 NA Intergenic Intergenic -400112 NM_052997 91074 Hs.373787 NM_052997 HPRD:10125 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 13-PTNLD9-TUMOR_peak_16877 chr15 29211498 29211619 + 10.63197 NA Intergenic Intergenic -2282 NM_005503 321 Hs.618112 NM_005503 HPRD:04090 APBA2 D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L amyloid beta (A4) precursor protein-binding, family A, member 2 protein-coding 13-PTNLD9-TUMOR_peak_44792 chr6 35778975 35779258 + 10.63197 NA intron (NM_182548, intron 1 of 3) MIR|SINE|MIR 6045 NM_182548 222662 Hs.367947 NM_182548 HPRD:13989 LHFPL5 DFNB67|TMHS|dJ510O8.8 lipoma HMGIC fusion partner-like 5 protein-coding 13-PTNLD9-TUMOR_peak_33416 chr22 45501062 45501605 + 10.63197 NA Intergenic L1MC4|LINE|L1 47132 NR_038957 100506714 Hs.189902 NR_038956 NUP50-AS1 - NUP50 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_33539 chr3 1225476 1225583 + 10.63197 NA intron (NM_001289080, intron 2 of 22) MLT1F2|LTR|ERVL-MaLR 91187 NM_001289081 27255 Hs.387300 NM_014461 HPRD:06242 CNTN6 NB3 contactin 6 protein-coding 13-PTNLD9-TUMOR_peak_55818 chrX 48456125 48456256 + 10.63197 NA promoter-TSS (NM_001166426) promoter-TSS (NM_001166426) -34 NM_001166426 64743 Hs.521973 NM_017883 HPRD:06753 WDR13 MG21 WD repeat domain 13 protein-coding 13-PTNLD9-TUMOR_peak_45647 chr6 86159654 86160060 + 10.63197 NA 5' UTR (NM_001204813, exon 1 of 8) 5' UTR (NM_001204813, exon 1 of 8) 555 NM_002526 4907 Hs.153952 NM_002526 HPRD:00552 NT5E CALJA|CD73|E5NT|NT|NT5|NTE|eN|eNT 5'-nucleotidase, ecto (CD73) protein-coding 13-PTNLD9-TUMOR_peak_11669 chr11 130473521 130473689 + 10.63197 NA Intergenic Intergenic -63025 NR_107019 102466873 NR_107019 MIR8052 hsa-mir-8052 microRNA 8052 ncRNA 13-PTNLD9-TUMOR_peak_9229 chr11 18137117 18137365 + 10.63197 NA intron (NR_026576, intron 1 of 2) intron (NR_026576, intron 1 of 2) 438 NR_026576 6290 Hs.454496 NR_026576 ENSG00000166787 SAA3P SAA3 serum amyloid A3 pseudogene pseudo 13-PTNLD9-TUMOR_peak_29170 chr2 176987381 176987942 + 10.63197 NA exon (NM_014213, exon 1 of 2) exon (NM_014213, exon 1 of 2) 248 NM_014213 3235 Hs.236646 NM_014213 HOXD9 HOX4|HOX4C|Hox-4.3|Hox-5.2 homeobox D9 protein-coding 13-PTNLD9-TUMOR_peak_23414 chr18 65618453 65618693 + 10.63197 NA Intergenic Intergenic -434606 NM_032160 92126 Hs.124673 NM_032160 HPRD:10720 DSEL C18orf4 dermatan sulfate epimerase-like protein-coding 13-PTNLD9-TUMOR_peak_10767 chr11 79807947 79808109 + 10.63197 NA Intergenic Intergenic -656333 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ODZ4|TNM4|Ten-M4 teneurin transmembrane protein 4 protein-coding 13-PTNLD9-TUMOR_peak_5030 chr1 202284851 202284959 + 10.63197 NA intron (NM_001017403, intron 17 of 17) intron (NM_001017403, intron 17 of 17) 26189 NM_014176 29089 Hs.5199 NM_014176 HPRD:13704 UBE2T PIG50 ubiquitin-conjugating enzyme E2T (putative) protein-coding 13-PTNLD9-TUMOR_peak_49093 chr7 130666919 130667112 + 10.62998 NA intron (NR_109851, intron 4 of 5) intron (NR_109851, intron 4 of 5) 68792 NR_109780 100506860 Hs.635013 NR_109780 LOC100506860 - uncharacterized LOC100506860 ncRNA 13-PTNLD9-TUMOR_peak_1904 chr1 56982655 56982801 + 10.62998 NA intron (NM_003713, intron 4 of 5) intron (NM_003713, intron 4 of 5) 62529 NM_003713 8613 Hs.405156 NM_003713 HPRD:06179 PPAP2B Dri42|LPP3|PAP2B|VCIP phosphatidic acid phosphatase type 2B protein-coding 13-PTNLD9-TUMOR_peak_1589 chr1 46035843 46036028 + 10.62998 NA TTS (NM_001202413) TTS (NM_001202413) -13725 NM_152298 4678 Hs.319334 NM_002482 HPRD:04423 NASP FLB7527|PRO1999 nuclear autoantigenic sperm protein (histone-binding) protein-coding 13-PTNLD9-TUMOR_peak_35361 chr3 111816362 111816548 + 10.62998 NA intron (NM_001171747, intron 2 of 3) intron (NM_001171747, intron 2 of 3) 11273 NM_024616 79669 Hs.434247 NM_024616 HPRD:08018 C3orf52 TTMP chromosome 3 open reading frame 52 protein-coding 13-PTNLD9-TUMOR_peak_42614 chr5 149522614 149522795 + 10.62998 NA intron (NM_002609, intron 1 of 22) MER44D|DNA|TcMar-Tigger 12718 NM_002609 5159 Hs.509067 NM_002609 HPRD:01423 PDGFRB CD140B|IBGC4|IMF1|JTK12|PDGFR|PDGFR-1|PDGFR1 platelet-derived growth factor receptor, beta polypeptide protein-coding 13-PTNLD9-TUMOR_peak_16259 chr14 75038701 75039140 + 10.62998 NA intron (NM_000428, intron 3 of 35) intron (NM_000428, intron 3 of 35) 40114 NM_000428 4053 Hs.512776 NM_000428 HPRD:03650 LTBP2 C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3 latent transforming growth factor beta binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_51461 chr8 102844029 102844325 + 10.62998 NA intron (NM_001040628, intron 4 of 7) intron (NM_001040628, intron 4 of 7) -40738 NM_032041 83988 Hs.492427 NM_032041 HPRD:09466 NCALD - neurocalcin delta protein-coding 13-PTNLD9-TUMOR_peak_31471 chr20 49472469 49472727 + 10.62998 NA intron (NM_198799, intron 4 of 4) intron (NM_198799, intron 4 of 4) 53730 NM_001282532 23394 Hs.293736 NM_015339 HPRD:09793 ADNP ADNP1|MRD28 activity-dependent neuroprotector homeobox protein-coding 13-PTNLD9-TUMOR_peak_24511 chr19 21688648 21688926 + 10.62998 NA intron (NM_001001415, intron 1 of 3) CpG 350 NM_001001415 353088 Hs.572567 NM_001001415 HPRD:18342 ZNF429 - zinc finger protein 429 protein-coding 13-PTNLD9-TUMOR_peak_33290 chr22 39649608 39649888 + 10.62998 NA Intergenic Intergenic -8791 NM_002608 5155 Hs.1976 NM_002608 HPRD:01815 PDGFB IBGC5|PDGF-2|PDGF2|SIS|SSV|c-sis platelet-derived growth factor beta polypeptide protein-coding 13-PTNLD9-TUMOR_peak_6821 chr10 30317663 30317922 + 10.62998 NA exon (NM_020848, exon 3 of 4) exon (NM_020848, exon 3 of 4) 30696 NM_020848 57608 Hs.533953 NM_020848 ENSG00000165757 KIAA1462 JCAD KIAA1462 protein-coding 13-PTNLD9-TUMOR_peak_21125 chr17 41478808 41478986 + 10.62998 NA TTS (NM_001661) TTS (NM_001661) 2544 NM_001661 379 Hs.183153 NM_001661 HPRD:02842 ARL4D ARF4L|ARL6 ADP-ribosylation factor-like 4D protein-coding 13-PTNLD9-TUMOR_peak_25548 chr19 52996463 52996678 + 10.62628 NA intron (NM_001099694, intron 3 of 5) CpG -34339 NM_001039886 388558 Hs.729294 NM_001039886 ENSG00000198482 ZNF808 - zinc finger protein 808 protein-coding 13-PTNLD9-TUMOR_peak_40178 chr5 1140522 1140710 + 10.62628 NA Intergenic Intergenic -28444 NM_006598 10723 Hs.172613 NM_006598 HPRD:09221 SLC12A7 KCC4 solute carrier family 12 (potassium/chloride transporter), member 7 protein-coding 13-PTNLD9-TUMOR_peak_1530 chr1 44759474 44759692 + 10.61992 NA intron (NM_024066, intron 6 of 8) intron (NM_024066, intron 6 of 8) -49628 NR_110056 100874278 Hs.132497 NR_046817 ERI3-IT1 - ERI3 intronic transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_6091 chr1 243268551 243268657 + 10.61992 NA Intergenic L1MA9|LINE|L1 -3558 NR_029401 731275 Hs.722350 NR_029401 LINC01347 - long intergenic non-protein coding RNA 1347 ncRNA 13-PTNLD9-TUMOR_peak_26844 chr2 47243717 47243938 + 10.61992 NA intron (NM_001288955, intron 10 of 18) intron (NM_001288955, intron 10 of 18) -74833 NM_001171511 90411 Hs.662152 NM_139279 HPRD:09693 MCFD2 F5F8D|F5F8D2|LMAN1IP|SDNSF multiple coagulation factor deficiency 2 protein-coding 13-PTNLD9-TUMOR_peak_7218 chr10 46769057 46769333 + 10.61992 NA Intergenic Intergenic -6303 NR_003611 399761 Hs.571994 NM_001040053 ENSG00000204164 BMS1P5 BMS1LP1|BMS1LP5|BMS1P1|bA556L1.3 BMS1 pseudogene 5 pseudo 13-PTNLD9-TUMOR_peak_7293 chr10 48707667 48707905 + 10.61992 NA Intergenic L2|LINE|L2 99199 NM_001042357 26095 Hs.440733 NM_015605 HPRD:10898 PTPN20B CT126|PTPN20A|bA142I17.1|bA42B19.1|hPTPN20 protein tyrosine phosphatase, non-receptor type 20B protein-coding 13-PTNLD9-TUMOR_peak_7621 chr10 71753156 71753556 + 10.61992 NA Intergenic SVA_E|Other|Other -59001 NM_018649 55506 Hs.499953 NM_018649 HPRD:13625 H2AFY2 macroH2A2 H2A histone family, member Y2 protein-coding 13-PTNLD9-TUMOR_peak_33861 chr3 13868854 13868980 + 10.61992 NA intron (NM_004625, intron 3 of 3) intron (NM_004625, intron 3 of 3) 52701 NM_004625 7476 Hs.72290 NM_004625 WNT7A - wingless-type MMTV integration site family, member 7A protein-coding 13-PTNLD9-TUMOR_peak_6801 chr10 29900829 29901155 + 10.61846 NA intron (NM_003174, intron 3 of 35) intron (NM_003174, intron 3 of 35) -9717 NR_030634 100126327 NR_030634 miRBase:MI0005760 MIR938 MIRN938|hsa-mir-938 microRNA 938 ncRNA 13-PTNLD9-TUMOR_peak_54706 chr9 125130231 125130334 + 10.61846 NA Intergenic Intergenic -2527 NM_001271368 5742 Hs.201978 NM_000962 HPRD:07518 PTGS1 COX1|COX3|PCOX1|PES-1|PGG/HS|PGHS-1|PGHS1|PHS1|PTGHS prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) protein-coding 13-PTNLD9-TUMOR_peak_24520 chr19 22469061 22469258 + 10.61846 NA promoter-TSS (NM_001242680) promoter-TSS (NM_001242680) -93 NM_001242680 100287226 Hs.531629 NM_001242680 ENSG00000196350 ZNF729 - zinc finger protein 729 protein-coding 13-PTNLD9-TUMOR_peak_49949 chr8 1908242 1908401 + 10.61846 NA Intergenic Intergenic -13723 NM_014867 9920 Hs.5333 NM_014867 HPRD:17195 KBTBD11 KLHDC7C kelch repeat and BTB (POZ) domain containing 11 protein-coding 13-PTNLD9-TUMOR_peak_23403 chr18 62384396 62384511 + 10.61846 NA Intergenic AluJr|SINE|Alu -457163 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LOC400654 - uncharacterized LOC400654 ncRNA 13-PTNLD9-TUMOR_peak_3687 chr1 152629022 152629169 + 10.61846 NA Intergenic Intergenic -6792 NM_178430 353141 Hs.490225 NM_178430 HPRD:17261 LCE2D LEP12|SPRL1A late cornified envelope 2D protein-coding 13-PTNLD9-TUMOR_peak_17680 chr15 75477100 75477382 + 10.61846 NA Intergenic AluJb|SINE|Alu -16980 NM_015492 56905 Hs.17936 NM_015492 HPRD:13154 C15orf39 - chromosome 15 open reading frame 39 protein-coding 13-PTNLD9-TUMOR_peak_51646 chr8 116576245 116576416 + 10.61846 NA intron (NM_001282902, intron 4 of 5) intron (NM_001282902, intron 4 of 5) 103909 NM_001282902 7227 Hs.657018 NM_014112 HPRD:05091 TRPS1 GC79|LGCR trichorhinophalangeal syndrome I protein-coding 13-PTNLD9-TUMOR_peak_48286 chr7 91195357 91195578 + 10.61846 NA Intergenic Intergenic 301684 NM_003505 8321 Hs.94234 NM_003505 HPRD:04558 FZD1 - frizzled class receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_56697 chrX 153311933 153312194 + 10.61846 NA intron (NM_001110792, intron 1 of 2) intron (NM_001110792, intron 1 of 2) -26623 NR_031757 100313781 NR_031757 miRBase:MI0012489 MIR718 hsa-mir-718 microRNA 718 ncRNA 13-PTNLD9-TUMOR_peak_2330 chr1 85839948 85840113 + 10.61846 NA intron (NM_001134445, intron 2 of 6) LTR78|LTR|ERV1 90859 NM_012137 23576 Hs.713411 NM_012137 HPRD:09203 DDAH1 DDAH|HEL-S-16 dimethylarginine dimethylaminohydrolase 1 protein-coding 13-PTNLD9-TUMOR_peak_4204 chr1 163137946 163138061 + 10.61846 NA intron (NR_110699, intron 2 of 3) intron (NR_110699, intron 2 of 3) 6538 NR_110699 101928404 Hs.683933 NR_110699 ENSG00000232892 LOC101928404 - uncharacterized LOC101928404 ncRNA 13-PTNLD9-TUMOR_peak_6433 chr10 7738579 7738795 + 10.61846 NA Intergenic Intergenic -6549 NM_002216 3698 Hs.75285 NM_002216 HPRD:00890 ITIH2 H2P|SHAP inter-alpha-trypsin inhibitor heavy chain 2 protein-coding 13-PTNLD9-TUMOR_peak_29670 chr2 208031491 208031643 + 10.61486 NA promoter-TSS (NM_003709) promoter-TSS (NM_003709) 13 NM_001270942 8609 Hs.59908 NM_003709 HPRD:07279 KLF7 UKLF Kruppel-like factor 7 (ubiquitous) protein-coding 13-PTNLD9-TUMOR_peak_29194 chr2 178107286 178107440 + 10.61074 NA intron (NM_006164, intron 1 of 4) intron (NM_006164, intron 1 of 4) 13375 NR_036075 100422824 NR_036075 MIR3128 - microRNA 3128 ncRNA 13-PTNLD9-TUMOR_peak_20239 chr17 1947232 1947361 + 10.61074 NA TTS (NM_080822) TTS (NM_080822) 2019 NM_080822 124641 Hs.513856 NM_080822 HPRD:07437 OVCA2 - ovarian tumor suppressor candidate 2 protein-coding 13-PTNLD9-TUMOR_peak_53685 chr9 78934445 78934688 + 10.61074 NA intron (NM_001190482, intron 29 of 36) LTR13A|LTR|ERVK 74878 NM_018339 55312 Hs.37558 NM_018339 HPRD:17969 RFK RIFK riboflavin kinase protein-coding 13-PTNLD9-TUMOR_peak_45205 chr6 46459662 46460109 + 10.61074 NA promoter-TSS (NM_001251974) promoter-TSS (NM_001251974) -81 NM_001251973 10231 Hs.440168 NM_005822 HPRD:05342 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 13-PTNLD9-TUMOR_peak_15515 chr14 34550776 34550924 + 10.60632 NA Intergenic Intergenic -130566 NM_022073 112399 Hs.135507 NM_022073 HPRD:06972 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia-inducible factor 3 protein-coding 13-PTNLD9-TUMOR_peak_24706 chr19 34311936 34312245 + 10.60632 NA Intergenic Intergenic 24339 NM_024076 79047 Hs.221873 NM_024076 HPRD:13765 KCTD15 - potassium channel tetramerization domain containing 15 protein-coding 13-PTNLD9-TUMOR_peak_48011 chr7 75573354 75573465 + 10.60632 NA TTS (NR_002955) TTS (NR_002955) 308 NR_002955 677801 Hs.689708 NR_002955 ENSG00000201643 SNORA14A ACA14a small nucleolar RNA, H/ACA box 14A snoRNA 13-PTNLD9-TUMOR_peak_14271 chr12 126540148 126540403 + 10.60632 NA Intergenic Intergenic -40263 NR_110053 101927464 Hs.443932 NR_110053 ENSG00000256342 LOC101927464 - uncharacterized LOC101927464 ncRNA 13-PTNLD9-TUMOR_peak_49230 chr7 135247645 135247827 + 10.60632 NA intron (NM_015135, intron 1 of 42) L2b|LINE|L2 5074 NM_015135 23165 Hs.743250 NM_015135 HPRD:17653 NUP205 C7orf14 nucleoporin 205kDa protein-coding 13-PTNLD9-TUMOR_peak_3343 chr1 145991536 145991646 + 10.60632 NA intron (NR_104217, intron 2 of 17).2 AluY|SINE|Alu -46114 NR_111936 100034743 Hs.696575 NR_003377 ENSG00000215860 PDZK1P2 OTTHUMT00000038524|PDZK1P1 PDZ domain containing 1 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_52490 chr8 145137103 145137263 + 10.60207 NA promoter-TSS (NM_003801) promoter-TSS (NM_003801) -341 NM_003801 8733 Hs.627962 NM_003801 HPRD:04334 GPAA1 GAA1|hGAA1 glycosylphosphatidylinositol anchor attachment 1 protein-coding 13-PTNLD9-TUMOR_peak_22010 chr17 73642295 73642448 + 10.59052 NA promoter-TSS (NM_001162997) promoter-TSS (NM_001162997) -275 NM_001162997 100130933 Hs.662541 NM_001162997 ENSG00000259120 SMIM6 C17orf110 small integral membrane protein 6 protein-coding 13-PTNLD9-TUMOR_peak_22138 chr17 76124724 76124833 + 10.59052 NA promoter-TSS (NM_001127198) promoter-TSS (NM_001127198) 83 NM_001127198 11322 Hs.632227 NM_007267 HPRD:08386 TMC6 EV1|EVER1|EVIN1|LAK-4P transmembrane channel-like 6 protein-coding 13-PTNLD9-TUMOR_peak_35365 chr3 111848269 111848454 + 10.59052 NA intron (NM_001190259, intron 2 of 5) intron (NM_001190259, intron 2 of 5) 3791 NM_001190260 257144 Hs.49614 NM_152785 HPRD:09695 GCSAM GCAT2|GCET2|HGAL germinal center-associated, signaling and motility protein-coding 13-PTNLD9-TUMOR_peak_26511 chr2 31607378 31607536 + 10.59052 NA intron (NM_000379, intron 9 of 35) intron (NM_000379, intron 9 of 35) 30154 NM_000379 7498 Hs.250 NM_000379 HPRD:06363 XDH XO|XOR xanthine dehydrogenase protein-coding 13-PTNLD9-TUMOR_peak_2511 chr1 94171754 94171875 + 10.59005 NA intron (NM_001261408, intron 2 of 13) intron (NM_001261408, intron 2 of 13) -24420 NM_003567 8412 Hs.36958 NM_003567 HPRD:05268 BCAR3 NSP2|SH2D3B breast cancer anti-estrogen resistance 3 protein-coding 13-PTNLD9-TUMOR_peak_5709 chr1 228558871 228559324 + 10.59005 NA exon (NM_001098623, exon 94 of 105) exon (NM_001098623, exon 94 of 105) 25713 NR_106800 102465444 NR_106800 MIR6742 hsa-mir-6742 microRNA 6742 ncRNA 13-PTNLD9-TUMOR_peak_50666 chr8 38794599 38794862 + 10.59005 NA intron (NM_021623, intron 3 of 12) intron (NM_021623, intron 3 of 12) 35977 NM_021623 59339 Hs.369123 NM_021623 ENSG00000169499 PLEKHA2 TAPP2 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 2 protein-coding 13-PTNLD9-TUMOR_peak_5189 chr1 205242735 205242969 + 10.59005 NA TTS (NM_001242925) TTS (NM_001242925) 17523 NM_001297613 9911 Hs.6360 NM_014858 HPRD:11040 TMCC2 HUCEP11 transmembrane and coiled-coil domain family 2 protein-coding 13-PTNLD9-TUMOR_peak_52563 chr8 146253010 146253191 + 10.59005 NA Intergenic HERVK-int|LTR|ERVK -24724 NM_023080 65265 Hs.169615 NM_023080 HPRD:07951 C8orf33 - chromosome 8 open reading frame 33 protein-coding 13-PTNLD9-TUMOR_peak_1377 chr1 42012232 42012506 + 10.58766 NA intron (NM_001127714, intron 4 of 7) intron (NM_001127714, intron 4 of 7) -62025 NM_001956 1907 Hs.1407 NM_001956 HPRD:07173 EDN2 ET2|PPET2 endothelin 2 protein-coding 13-PTNLD9-TUMOR_peak_14129 chr12 122502870 122503020 + 10.58766 NA Intergenic Intergenic -13689 NM_014938 22877 Hs.437153 NM_014938 MLXIP MIR|MONDOA|bHLHe36 MLX interacting protein protein-coding 13-PTNLD9-TUMOR_peak_4683 chr1 182998821 182999119 + 10.58766 NA intron (NM_002293, intron 1 of 27) intron (NM_002293, intron 1 of 27) 6375 NM_002293 3915 Hs.609663 NM_002293 HPRD:01030 LAMC1 LAMB2 laminin, gamma 1 (formerly LAMB2) protein-coding 13-PTNLD9-TUMOR_peak_42768 chr5 155829732 155829908 + 10.58766 NA intron (NM_001128209, intron 2 of 7) LTR43|LTR|ERV1 76053 NM_000337 6444 Hs.387207 NM_000337 HPRD:03246 SGCD 35DAG|CMD1L|DAGD|SG-delta|SGCDP|SGD sarcoglycan, delta (35kDa dystrophin-associated glycoprotein) protein-coding 13-PTNLD9-TUMOR_peak_49264 chr7 136815599 136815808 + 10.58766 NA intron (NR_046103, intron 1 of 3) L1PREC2|LINE|L1 33385 NR_046103 349160 Hs.660713 NR_046103 ENSG00000234352 LOC349160 - uncharacterized LOC349160 ncRNA 13-PTNLD9-TUMOR_peak_28375 chr2 128173560 128173858 + 10.58766 NA Intergenic CpG -2287 NM_000312 5624 Hs.224698 NM_000312 HPRD:01466 PROC APC|PC|PROC1|THPH3|THPH4 protein C (inactivator of coagulation factors Va and VIIIa) protein-coding 13-PTNLD9-TUMOR_peak_28117 chr2 113627224 113627415 + 10.58766 NA Intergenic Intergenic -32963 NM_000576 3553 Hs.126256 NM_000576 HPRD:00985 IL1B IL-1|IL1-BETA|IL1F2 interleukin 1, beta protein-coding 13-PTNLD9-TUMOR_peak_36302 chr3 147372764 147373344 + 10.58766 NA Intergenic Intergenic 233940 NR_121655 440982 Hs.535724 NR_121655 LOC440982 - uncharacterized LOC440982 ncRNA 13-PTNLD9-TUMOR_peak_25663 chr19 55580797 55580969 + 10.58766 NA promoter-TSS (NM_138412) promoter-TSS (NM_138412) 31 NM_138412 112724 Hs.327631 NM_138412 HPRD:17963 RDH13 SDR7C3 retinol dehydrogenase 13 (all-trans/9-cis) protein-coding 13-PTNLD9-TUMOR_peak_37047 chr3 185977448 185977572 + 10.58126 NA intron (NM_001080744, intron 15 of 23) intron (NM_001080744, intron 15 of 23) 102513 NM_001080745 1608 Hs.683449 NM_001346 HPRD:03510 DGKG DAGK3|DGK-GAMMA diacylglycerol kinase, gamma 90kDa protein-coding 13-PTNLD9-TUMOR_peak_13845 chr12 111182127 111182318 + 10.58126 NA Intergenic Intergenic -1439 NM_002710 5501 Hs.79081 NM_002710 HPRD:08911 PPP1CC PP-1G|PP1C|PPP1G protein phosphatase 1, catalytic subunit, gamma isozyme protein-coding 13-PTNLD9-TUMOR_peak_523 chr1 16482551 16482742 + 10.58126 NA promoter-TSS (NM_004431) promoter-TSS (NM_004431) -64 NM_004431 1969 Hs.171596 NM_004431 HPRD:01494 EPHA2 ARCC2|CTPA|CTPP1|CTRCT6|ECK EPH receptor A2 protein-coding 13-PTNLD9-TUMOR_peak_35583 chr3 123128670 123128972 + 10.58126 NA intron (NM_183357, intron 1 of 20) intron (NM_183357, intron 1 of 20) 6368 NM_001199642 111 Hs.593292 NM_183357 HPRD:08973 ADCY5 AC5|FDFM adenylate cyclase 5 protein-coding 13-PTNLD9-TUMOR_peak_31767 chr20 60961995 60962208 + 10.58126 NA promoter-TSS (NM_001024) promoter-TSS (NM_001024) -20 NM_001024 6227 Hs.190968 NM_001024 HPRD:01605 RPS21 HLDF|S21 ribosomal protein S21 protein-coding 13-PTNLD9-TUMOR_peak_55736 chrX 40333406 40333731 + 10.58004 NA Intergenic Intergenic -106648 NM_005765 10159 Hs.495960 NM_005765 HPRD:06454 ATP6AP2 APT6M8-9|ATP6IP2|ATP6M8-9|ELDF10|M8-9|MRXE|MRXSH|MSTP009|PRR|RENR|XMRE|XPDS ATPase, H+ transporting, lysosomal accessory protein 2 protein-coding 13-PTNLD9-TUMOR_peak_29134 chr2 174870072 174870268 + 10.58004 NA Intergenic Intergenic -39740 NM_003111 6670 Hs.531587 NM_003111 HPRD:03483 SP3 SPR2 Sp3 transcription factor protein-coding 13-PTNLD9-TUMOR_peak_33225 chr22 37921486 37921667 + 10.58004 NA Intergenic Intergenic -6366 NM_014550 29775 Hs.57973 NM_014550 HPRD:06233 CARD10 BIMP1|CARMA3 caspase recruitment domain family, member 10 protein-coding 13-PTNLD9-TUMOR_peak_2961 chr1 115857508 115857685 + 10.58004 NA intron (NM_002506, intron 1 of 2) L2a|LINE|L2 23261 NM_002506 4803 Hs.2561 NM_002506 HPRD:08874 NGF Beta-NGF|HSAN5|NGFB nerve growth factor (beta polypeptide) protein-coding 13-PTNLD9-TUMOR_peak_2142 chr1 68232055 68232389 + 10.58004 NA intron (NM_018841, intron 2 of 3) intron (NM_018841, intron 2 of 3) -65749 NR_040077 100289178 Hs.677603 NR_040077 ENSG00000232284 GNG12-AS1 - GNG12 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_38010 chr4 13707209 13707626 + 10.58004 NA intron (NR_121681, intron 2 of 3) intron (NR_121681, intron 2 of 3) 50614 NR_121681 101929071 Hs.543714 NR_121681 ENSG00000250634 LINC01182 - long intergenic non-protein coding RNA 1182 ncRNA 13-PTNLD9-TUMOR_peak_10492 chr11 70718159 70718317 + 10.58004 NA TTS (NR_037437) TTS (NR_037437) 235 NR_037437 100500844 NR_037437 MIR3664 - microRNA 3664 ncRNA 13-PTNLD9-TUMOR_peak_255 chr1 8048739 8048934 + 10.58004 NA Intergenic Intergenic 27122 NM_001123377 11315 Hs.419640 NM_007262 HPRD:03961 PARK7 DJ-1|DJ1|HEL-S-67p parkinson protein 7 protein-coding 13-PTNLD9-TUMOR_peak_20883 chr17 33914294 33914468 + 10.58004 NA promoter-TSS (NM_001282) promoter-TSS (NM_001282) 99 NM_001030006 163 Hs.514819 NM_001282 HPRD:03015 AP2B1 ADTB2|AP105B|AP2-BETA|CLAPB1 adaptor-related protein complex 2, beta 1 subunit protein-coding 13-PTNLD9-TUMOR_peak_29242 chr2 180460814 180460983 + 10.58004 NA intron (NM_152520, intron 3 of 9) MLT1E3|LTR|ERVL-MaLR -10265 NR_104234 151126 Hs.655005 NM_152520 HPRD:15823 ZNF385B ZNF533 zinc finger protein 385B protein-coding 13-PTNLD9-TUMOR_peak_11553 chr11 126215974 126216167 + 10.58004 NA TTS (NM_014026) TTS (NM_014026) 9412 NR_033839 399972 Hs.585206 NR_033839 ST3GAL4-AS1 DCPS-AS1 ST3GAL4 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_1473 chr1 43919559 43919761 + 10.57834 NA promoter-TSS (NM_001243526) promoter-TSS (NM_001243526) 0 NM_031207 81888 Hs.709864 NM_031207 HPRD:11039 HYI HT036 hydroxypyruvate isomerase (putative) protein-coding 13-PTNLD9-TUMOR_peak_41065 chr5 65107849 65107981 + 10.57834 NA intron (NM_020726, intron 11 of 12) intron (NM_020726, intron 11 of 12) 89892 NM_020726 57486 Hs.247460 NM_020726 HPRD:07495 NLN AGTBP|EP24.16|MEP|MOP neurolysin (metallopeptidase M3 family) protein-coding 13-PTNLD9-TUMOR_peak_37194 chr3 189794477 189794687 + 10.57834 NA intron (NM_001134418, intron 1 of 14) intron (NM_001134418, intron 1 of 14) 44326 NM_018192 55214 Hs.374191 NM_018192 HPRD:17270 LEPREL1 MCVD|MLAT4|P3H2 leprecan-like 1 protein-coding 13-PTNLD9-TUMOR_peak_7602 chr10 71199597 71199732 + 10.57636 NA Intergenic AluSx1|SINE|Alu -11562 NM_012339 23555 Hs.499941 NM_012339 HPRD:15511 TSPAN15 2700063A19Rik|NET-7|NET7|TM4SF15 tetraspanin 15 protein-coding 13-PTNLD9-TUMOR_peak_5895 chr1 234613951 234614471 + 10.57636 NA exon (NM_005646, exon 1 of 30) exon (NM_005646, exon 1 of 30) 638 NM_005646 6894 Hs.498115 NM_005646 HPRD:05445 TARBP1 TRM3|TRP-185|TRP185 TAR (HIV-1) RNA binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_29460 chr2 198063720 198063825 + 10.57188 NA intron (NM_001195144, intron 1 of 27) intron (NM_001195144, intron 1 of 27) 103471 NR_046837 101927547 Hs.687027 NR_046837 ANKRD44-IT1 - ANKRD44 intronic transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_14154 chr12 123184616 123185055 + 10.57188 NA Intergenic Intergenic 3069 NM_177551 338442 Hs.524812 NM_177551 HPRD:16453 HCAR2 GPR109A|HCA2|HM74a|HM74b|NIACR1|PUMAG|Puma-g hydroxycarboxylic acid receptor 2 protein-coding 13-PTNLD9-TUMOR_peak_30399 chr20 10073741 10074130 + 10.57188 NA intron (NR_040710, intron 3 of 4) intron (NR_040710, intron 3 of 4) 58238 NM_198798 63926 Hs.70903 NM_022096 HPRD:10652 ANKEF1 ANKRD5|dJ839B4.6 ankyrin repeat and EF-hand domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_28408 chr2 129351592 129351839 + 10.57188 NA Intergenic Intergenic -270459 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 13-PTNLD9-TUMOR_peak_21357 chr17 46550020 46550521 + 10.57188 NA Intergenic Intergenic 28075 NR_110804 101927166 Hs.149244 NR_110804 LOC101927166 - uncharacterized LOC101927166 ncRNA 13-PTNLD9-TUMOR_peak_12364 chr12 27071948 27072124 + 10.57188 NA intron (NM_018164, intron 8 of 16) AluJr|SINE|Alu 19218 NM_018164 55726 Hs.505077 NM_018164 HPRD:07689 ASUN C12orf11|GCT1|Mat89Bb|NET48|SPATA30 asunder spermatogenesis regulator protein-coding 13-PTNLD9-TUMOR_peak_29365 chr2 191700154 191700269 + 10.57188 NA Intergenic L3|LINE|CR1 -45336 NM_001256310 2744 Hs.116448 NM_014905 HPRD:00700 GLS AAD20|GAC|GAM|GLS1|KGA glutaminase protein-coding 13-PTNLD9-TUMOR_peak_34435 chr3 46437031 46437243 + 10.57188 NA intron (NR_125406, intron 1 of 3) intron (NR_125406, intron 1 of 3) 11413 NR_125406 102724297 Hs.622021 NR_125406 LOC102724297 - uncharacterized LOC102724297 ncRNA 13-PTNLD9-TUMOR_peak_7665 chr10 72968925 72969047 + 10.57188 NA Intergenic Intergenic -3306 NM_001244889 219699 Hs.522997 NM_170744 HPRD:08487 UNC5B UNC5H2|p53RDL1 unc-5 homolog B (C. elegans) protein-coding 13-PTNLD9-TUMOR_peak_23101 chr18 45652179 45652299 + 10.57188 NA intron (NM_001039360, intron 1 of 2) intron (NM_001039360, intron 1 of 2) 11441 NM_001039360 201501 Hs.515388 NM_001039360 ENSG00000184828 ZBTB7C APM-1|APM1|ZBTB36|ZNF857C zinc finger and BTB domain containing 7C protein-coding 13-PTNLD9-TUMOR_peak_10982 chr11 95829295 95829517 + 10.57188 NA intron (NM_032427, intron 1 of 4) intron (NM_032427, intron 1 of 4) -172035 NM_016156 8898 Hs.181326 NM_016156 HPRD:04650 MTMR2 CMT4B|CMT4B1 myotubularin related protein 2 protein-coding 13-PTNLD9-TUMOR_peak_53311 chr9 43179114 43179213 + 10.57188 NA Intergenic Intergenic -33679 NR_027472 642929 Hs.584288 NR_027472 LOC642929 - general transcription factor II, i pseudogene pseudo 13-PTNLD9-TUMOR_peak_26959 chr2 55450546 55450744 + 10.57188 NA intron (NM_152385, intron 2 of 12) CpG -8394 NM_001135592 6233 Hs.311640 NM_002954 HPRD:01878 RPS27A CEP80|HEL112|S27A|UBA80|UBC|UBCEP1|UBCEP80 ribosomal protein S27a protein-coding 13-PTNLD9-TUMOR_peak_20977 chr17 37607503 37607676 + 10.57188 NA promoter-TSS (NM_004774) promoter-TSS (NM_004774) -62 NM_004774 5469 Hs.643754 NM_004774 HPRD:05055 MED1 CRSP1|CRSP200|DRIP205|DRIP230|PBP|PPARBP|PPARGBP|RB18A|TRAP220|TRIP2 mediator complex subunit 1 protein-coding 13-PTNLD9-TUMOR_peak_51369 chr8 99370773 99370926 + 10.57188 NA Intergenic Intergenic -64228 NM_024759 79815 Hs.309489 NM_024759 NIPAL2 NPAL2 NIPA-like domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_44192 chr6 26026597 26026768 + 10.56797 NA TTS (NM_003544) TTS (NM_003544) 798 NM_003544 8366 Hs.143080 NM_003544 HPRD:11920 HIST1H4B H4/I|H4FI histone cluster 1, H4b protein-coding 13-PTNLD9-TUMOR_peak_44209 chr6 26156489 26156849 + 10.56761 NA exon (NM_005321, exon 1 of 1) exon (NM_005321, exon 1 of 1) 110 NM_005321 3008 Hs.248133 NM_005321 HPRD:07513 HIST1H1E H1.4|H1E|H1F4|H1s-4|dJ221C16.5 histone cluster 1, H1e protein-coding 13-PTNLD9-TUMOR_peak_46427 chr6 159067591 159067880 + 10.56413 NA Intergenic Intergenic -1917 NM_001291602 6993 Hs.445999 NM_006519 HPRD:15987 DYNLT1 CW-1|TCTEL1|tctex-1 dynein, light chain, Tctex-type 1 protein-coding 13-PTNLD9-TUMOR_peak_18637 chr16 16317227 16317432 + 10.55577 NA promoter-TSS (NM_001171) promoter-TSS (NM_001171) -1 NM_001079528 368 Hs.442182 NM_001171 HPRD:04453 ABCC6 ABC34|ARA|EST349056|GACI2|MLP1|MOAT-E|MOATE|MRP6|PXE|PXE1|URG7 ATP-binding cassette, sub-family C (CFTR/MRP), member 6 protein-coding 13-PTNLD9-TUMOR_peak_5017 chr1 202101454 202101618 + 10.55577 NA TTS (NM_138795) TTS (NM_138795) 9507 NM_004767 9283 Hs.132049 NM_004767 GPR37L1 ET(B)R-LP-2|ETBR-LP-2 G protein-coupled receptor 37 like 1 protein-coding 13-PTNLD9-TUMOR_peak_6641 chr10 21658025 21658231 + 10.55577 NA Intergenic Intergenic 127442 NR_031736 100302129 NR_031736 MIR1915 MIRN1915|hsa-mir-1915 microRNA 1915 ncRNA 13-PTNLD9-TUMOR_peak_27499 chr2 87542713 87542880 + 10.55577 NA Intergenic Intergenic -212178 NR_024204 112597 Hs.652166 NM_052871 HPRD:14654 LINC00152 C2orf59|NCRNA00152 long intergenic non-protein coding RNA 152 ncRNA 13-PTNLD9-TUMOR_peak_25190 chr19 47033970 47034236 + 10.55577 NA intron (NM_001205281, intron 1 of 3) intron (NM_001205281, intron 1 of 3) -34934 NM_020709 57469 Hs.7193 NM_020709 ENSG00000204851 PNMAL2 - paraneoplastic Ma antigen family-like 2 protein-coding 13-PTNLD9-TUMOR_peak_20052 chr16 87959072 87959350 + 10.55577 NA intron (NM_001739, intron 2 of 6) intron (NM_001739, intron 2 of 6) 10901 NM_001739 763 Hs.177446 NM_001739 HPRD:00262 CA5A CA5|CA5AD|CAV|CAVA carbonic anhydrase VA, mitochondrial protein-coding 13-PTNLD9-TUMOR_peak_8982 chr11 8835266 8835514 + 10.55577 NA intron (NM_005418, intron 3 of 22) intron (NM_005418, intron 3 of 22) -2508 NM_139157 6764 Hs.117715 NM_005418 HPRD:00780 ST5 DENND2B|HTS1|p126 suppression of tumorigenicity 5 protein-coding 13-PTNLD9-TUMOR_peak_18923 chr16 29283400 29283628 + 10.55232 NA Intergenic Intergenic -30094 NR_002939 440352 Hs.658149 NR_002939 SNX29P2 RUNDC2C sorting nexin 29 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_12137 chr12 11653558 11653745 + 10.54566 NA Intergenic CpG -47313 NR_033890 338817 Hs.733066 NR_033890 ENSG00000247157 LINC01252 - long intergenic non-protein coding RNA 1252 ncRNA 13-PTNLD9-TUMOR_peak_33443 chr22 46403004 46403180 + 10.54566 NA non-coding (NR_027240, exon 1 of 1) non-coding (NR_027240, exon 1 of 1) 596 NR_027240 730668 Hs.640071 NR_027240 LOC730668 - dynein heavy chain -like pseudogene pseudo 13-PTNLD9-TUMOR_peak_19537 chr16 66642567 66642703 + 10.54566 NA intron (NR_037619, intron 2 of 4) intron (NR_037619, intron 2 of 4) 4001 NR_037619 123920 Hs.298198 NM_144601 HPRD:16259 CMTM3 BNAS2|CKLFSF3 CKLF-like MARVEL transmembrane domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_56599 chrX 149657962 149658198 + 10.54566 NA intron (NM_001177466, intron 3 of 5) LTR16B|LTR|ERVL 44360 NM_005491 10046 Hs.20136 NM_005491 HPRD:02126 MAMLD1 CG1|CXorf6|F18|HYSP2 mastermind-like domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_6672 chr10 23634897 23635100 + 10.54566 NA Intergenic Intergenic -1226 NM_153714 256815 Hs.522360 NM_153714 HPRD:12585 C10orf67 - chromosome 10 open reading frame 67 protein-coding 13-PTNLD9-TUMOR_peak_23365 chr18 60152957 60153162 + 10.54566 NA Intergenic Intergenic -37599 NM_017742 54877 Hs.114191 NM_017742 HPRD:11696 ZCCHC2 C18orf49 zinc finger, CCHC domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_34090 chr3 24279827 24280156 + 10.54566 NA intron (NM_000461, intron 2 of 9) intron (NM_000461, intron 2 of 9) 87176 NR_121667 101927854 Hs.570625 NR_121667 LOC101927854 - uncharacterized LOC101927854 ncRNA 13-PTNLD9-TUMOR_peak_27869 chr2 102601922 102602162 + 10.54445 NA TTS (NR_103791) TTS (NR_103791) 2115 NR_103791 100506328 Hs.516245 NR_103791 LINC01127 - long intergenic non-protein coding RNA 1127 ncRNA 13-PTNLD9-TUMOR_peak_14559 chr13 33002261 33002590 + 10.54368 NA promoter-TSS (NM_052818) promoter-TSS (NM_052818) -110 NM_001079691 90634 Hs.732118 NM_052818 HPRD:12384 N4BP2L1 CG018 NEDD4 binding protein 2-like 1 protein-coding 13-PTNLD9-TUMOR_peak_16570 chr14 100584463 100584651 + 10.54368 NA intron (NM_016337, intron 3 of 13) intron (NM_016337, intron 3 of 13) 41455 NM_206918 123099 Hs.159643 NM_206918 DEGS2 C14orf66|DES2|FADS8 delta(4)-desaturase, sphingolipid 2 protein-coding 13-PTNLD9-TUMOR_peak_3979 chr1 156890175 156890449 + 10.54368 NA promoter-TSS (NM_144702) promoter-TSS (NM_144702) -112 NM_144702 149499 Hs.491734 NM_144702 HPRD:08737 LRRC71 C1orf92 leucine rich repeat containing 71 protein-coding 13-PTNLD9-TUMOR_peak_36282 chr3 145968840 145969050 + 10.54368 NA promoter-TSS (NM_001128305) promoter-TSS (NM_001128305) 21 NM_001177304 57088 Hs.477869 NM_020353 HPRD:07401 PLSCR4 TRA1 phospholipid scramblase 4 protein-coding 13-PTNLD9-TUMOR_peak_35451 chr3 115377697 115377956 + 10.54368 NA intron (NM_002045, intron 1 of 2) intron (NM_002045, intron 1 of 2) 35675 NM_001130064 2596 Hs.134974 NM_002045 HPRD:01198 GAP43 B-50|PP46 growth associated protein 43 protein-coding 13-PTNLD9-TUMOR_peak_10435 chr11 69048065 69048260 + 10.54368 NA Intergenic MIR|SINE|MIR -13443 NM_001300923 26579 Hs.523848 NM_138768 HPRD:16130 MYEOV OCIM myeloma overexpressed protein-coding 13-PTNLD9-TUMOR_peak_29687 chr2 208497331 208497726 + 10.54368 NA Intergenic Intergenic -7555 NM_001127395 151194 Hs.664764 NM_145280 HPRD:14090 METTL21A FAM119A|HCA557b|HSPA-KMT methyltransferase like 21A protein-coding 13-PTNLD9-TUMOR_peak_11752 chr12 240995 241175 + 10.54368 NA intron (NM_001170738, intron 3 of 13) intron (NM_001170738, intron 3 of 13) 17247 NR_033859 574538 Hs.589138 NR_033859 ENSG00000249695 LOC574538 - uncharacterized LOC574538 ncRNA 13-PTNLD9-TUMOR_peak_12891 chr12 53689196 53689332 + 10.54368 NA promoter-TSS (NM_145897) promoter-TSS (NM_145897) 29 NM_002624 5204 Hs.655327 NM_002624 ENSG00000123349 PFDN5 MM-1|MM1|PFD5 prefoldin subunit 5 protein-coding 13-PTNLD9-TUMOR_peak_4792 chr1 186649385 186649607 + 10.54368 NA promoter-TSS (NM_000963) promoter-TSS (NM_000963) 63 NM_000963 5743 Hs.196384 NM_000963 HPRD:02599 PTGS2 COX-2|COX2|GRIPGHS|PGG/HS|PGHS-2|PHS-2|hCox-2 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase) protein-coding 13-PTNLD9-TUMOR_peak_18735 chr16 21532866 21533244 + 10.53461 NA Intergenic Intergenic -1290 NR_002594 387254 Hs.448808 NR_002594 SLC7A5P2 IMAA|MMAA solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_2376 chr1 88244699 88245089 + 10.52780 NA Intergenic Charlie8|DNA|hAT-Charlie -407556 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 13-PTNLD9-TUMOR_peak_12630 chr12 45839858 45840124 + 10.52780 NA Intergenic L1PB1|LINE|L1 153525 NM_001142678 196527 Hs.505339 NM_001025356 HPRD:18746 ANO6 BDPLT7|SCTS|TMEM16F anoctamin 6 protein-coding 13-PTNLD9-TUMOR_peak_28119 chr2 113699380 113699562 + 10.52780 NA Intergenic Intergenic 26701 NM_173205 27178 Hs.166371 NM_014439 HPRD:05695 IL37 FIL1|FIL1(ZETA)|FIL1Z|IL-1F7|IL-1H|IL-1H4|IL-1RP1|IL-37|IL1F7|IL1H4|IL1RP1 interleukin 37 protein-coding 13-PTNLD9-TUMOR_peak_8963 chr11 8378775 8378950 + 10.52780 NA Intergenic Intergenic -88680 NM_001270428 4004 Hs.654426 NM_002315 HPRD:01738 LMO1 RBTN1|RHOM1|TTG1 LIM domain only 1 (rhombotin 1) protein-coding 13-PTNLD9-TUMOR_peak_15272 chr14 21686369 21686500 + 10.52780 NA intron (NM_001077443, intron 4 of 7) intron (NM_001077443, intron 4 of 7) -11375 NR_038971 283624 Hs.525210 NR_038970 ENSG00000258441 LINC00641 - long intergenic non-protein coding RNA 641 ncRNA 13-PTNLD9-TUMOR_peak_35720 chr3 126006399 126006572 + 10.52780 NA Intergenic Intergenic 69751 NM_014079 28999 Hs.272215 NM_014079 HPRD:07568 KLF15 KKLF Kruppel-like factor 15 protein-coding 13-PTNLD9-TUMOR_peak_15961 chr14 61960004 61960235 + 10.52780 NA intron (NM_006255, intron 10 of 13) MLT1J|LTR|ERVL-MaLR 76793 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LOC101927780 - uncharacterized LOC101927780 ncRNA 13-PTNLD9-TUMOR_peak_54561 chr9 117919736 117919896 + 10.52780 NA intron (NM_017418, intron 1 of 7) intron (NM_017418, intron 1 of 7) 15719 NM_017418 50514 Hs.148841 NM_017418 HPRD:16068 DEC1 CTS9 deleted in esophageal cancer 1 protein-coding 13-PTNLD9-TUMOR_peak_44881 chr6 37659917 37660033 + 10.52780 NA intron (NM_153487, intron 1 of 16) intron (NM_153487, intron 1 of 16) 5791 NM_153487 266727 Hs.437993 NM_153487 HPRD:14374 MDGA1 GPIM|MAMDC3 MAM domain containing glycosylphosphatidylinositol anchor 1 protein-coding 13-PTNLD9-TUMOR_peak_37943 chr4 9457164 9457300 + 10.52780 NA Intergenic HERVE-int|LTR|ERV1 10972 NM_001040448 644414 Hs.590200 NM_001040448 ENSG00000186146 DEFB131 DEFB-31 defensin, beta 131 protein-coding 13-PTNLD9-TUMOR_peak_33474 chr22 47225966 47226213 + 10.52780 NA intron (NR_104292, intron 5 of 13) intron (NR_104292, intron 5 of 13) 56265 NM_001284305 25771 Hs.435044 NM_014346 HPRD:15474 TBC1D22A C22orf4|HSC79E021 TBC1 domain family, member 22A protein-coding 13-PTNLD9-TUMOR_peak_10907 chr11 92738556 92738728 + 10.52780 NA Intergenic Intergenic 35853 NM_005959 4544 Hs.569039 NM_005959 HPRD:02882 MTNR1B FGQTL2|MEL-1B-R|MT2 melatonin receptor 1B protein-coding 13-PTNLD9-TUMOR_peak_7266 chr10 48032875 48033103 + 10.52780 NA Intergenic Intergenic -122954 NR_033407 1517 Hs.568350 NR_033407 CTSLP2 CTSL1P2|CTSL1P5|CTSL1P7|CTSLL2|CTSLL5|CTSLL7|CTSLP5|CTSLP7|bA144G6.6|bA342C24.4 cathepsin L pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_41884 chr5 123150049 123150182 + 10.52780 NA Intergenic Intergenic 269004 NM_004384 1456 Hs.129206 NM_004384 HPRD:05034 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1, gamma 3 protein-coding 13-PTNLD9-TUMOR_peak_51113 chr8 70033084 70033302 + 10.52780 NA Intergenic L1MDa|LINE|L1 -16768 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LOC100505718 - uncharacterized LOC100505718 ncRNA 13-PTNLD9-TUMOR_peak_1821 chr1 53935921 53936151 + 10.52780 NA Intergenic Intergenic 10964 NM_033067 63948 Hs.131654 NM_033067 HPRD:16828 DMRTB1 - DMRT-like family B with proline-rich C-terminal, 1 protein-coding 13-PTNLD9-TUMOR_peak_43729 chr6 10190255 10190536 + 10.52780 NA Intergenic MER70B|LTR|ERVL -222156 NR_033910 100130275 Hs.661431 NR_033910 TFAP2A-AS1 - TFAP2A antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_44179 chr6 25458857 25459008 + 10.52780 NA intron (NM_017640, intron 8 of 36) MIR|SINE|MIR 179276 NM_001173977 55604 Hs.649550 NM_017640 HPRD:11285 LRRC16A CARMIL|CARMIL1|CARMIL1a|LRRC16|dJ501N12.1|dJ501N12.5 leucine rich repeat containing 16A protein-coding 13-PTNLD9-TUMOR_peak_39466 chr4 141556962 141557093 + 10.52780 NA intron (NM_015130, intron 15 of 20) intron (NM_015130, intron 15 of 20) 7207 NR_077215 644962 Hs.676500 NR_077215 TNRC18P1 - TNRC18P1 pseudo 13-PTNLD9-TUMOR_peak_54064 chr9 97580576 97580815 + 10.52780 NA intron (NM_032823, intron 5 of 14) intron (NM_032823, intron 5 of 14) 8451 NR_031755 100313780 NR_031755 MIR2278 - microRNA 2278 ncRNA 13-PTNLD9-TUMOR_peak_45633 chr6 84815385 84815593 + 10.52780 NA Intergenic ERVL-int|LTR|ERVL 72069 NM_138409 112609 Hs.370055 NM_138409 HPRD:12843 MRAP2 BMIQ18|C6orf117|bA51G5.2 melanocortin 2 receptor accessory protein 2 protein-coding 13-PTNLD9-TUMOR_peak_18071 chr15 99939949 99940086 + 10.52780 NA Intergenic Intergenic 142287 NR_073383 7190 Hs.656611 NR_073383 HSP90B2P GRP94P1|GRP94b|HSP|HSPCP2|TRA1P1|TRAP1 heat shock protein 90kDa beta (Grp94), member 2, pseudogene pseudo 13-PTNLD9-TUMOR_peak_16511 chr14 96572438 96572689 + 10.52780 NA Intergenic Intergenic 66902 NM_001282464 56967 Hs.6434 NM_020215 C14orf132 C14orf88 chromosome 14 open reading frame 132 protein-coding 13-PTNLD9-TUMOR_peak_39623 chr4 151936394 151936714 + 10.52770 NA promoter-TSS (NM_001199282) promoter-TSS (NM_001199282) 95 NM_006726 987 Hs.480938 NM_006726 HPRD:07344 LRBA BGL|CDC4L|CVID8|LAB300|LBA LPS-responsive vesicle trafficking, beach and anchor containing protein-coding 13-PTNLD9-TUMOR_peak_17083 chr15 40672116 40672337 + 10.52520 NA Intergenic L2a|LINE|L2 -2696 NM_001142762 90417 Hs.525796 NM_033286 HPRD:12669 KNSTRN C15orf23|SKAP|TRAF4AF1 kinetochore-localized astrin/SPAG5 binding protein protein-coding 13-PTNLD9-TUMOR_peak_22810 chr18 22204808 22205021 + 10.52520 NA Intergenic L1PA2|LINE|L1 -3232 NR_040033 729950 Hs.585850 NR_040033 ENSG00000265485 LOC729950 - uncharacterized LOC729950 ncRNA 13-PTNLD9-TUMOR_peak_24737 chr19 35351514 35351635 + 10.52520 NA Intergenic L1PA4|LINE|L1 -27801 NR_033982 400685 Hs.730118 NR_033982 ENSG00000267767 LOC400685 - uncharacterized LOC400685 ncRNA 13-PTNLD9-TUMOR_peak_39090 chr4 111985521 111985742 + 10.52520 NA Intergenic Intergenic -422352 NM_001204399 5308 Hs.643588 NM_000325 HPRD:03328 PITX2 ARP1|Brx1|IDG2|IGDS|IGDS2|IHG2|IRID2|Otlx2|PTX2|RGS|RIEG|RIEG1|RS paired-like homeodomain 2 protein-coding 13-PTNLD9-TUMOR_peak_43616 chr6 5457346 5457621 + 10.52520 NA intron (NM_006567, intron 4 of 6) intron (NM_006567, intron 4 of 6) 195899 NM_006567 10667 Hs.484547 NM_006567 HPRD:09946 FARS2 COXPD14|FARS1|HSPC320|PheRS|dJ520B18.2 phenylalanyl-tRNA synthetase 2, mitochondrial protein-coding 13-PTNLD9-TUMOR_peak_35057 chr3 82386776 82386888 + 10.52520 NA Intergenic L1HS|LINE|L1 -575882 NM_000158 2632 Hs.436062 NM_000158 HPRD:01985 GBE1 APBD|GBE|GSD4 glucan (1,4-alpha-), branching enzyme 1 protein-coding 13-PTNLD9-TUMOR_peak_5566 chr1 224294300 224294620 + 10.52520 NA Intergenic LTR41|LTR|ERVL -7329 NR_049764 23219 Hs.64691 NM_015176 HPRD:12367 FBXO28 CENP-30|Fbx28 F-box protein 28 protein-coding 13-PTNLD9-TUMOR_peak_12780 chr12 51818828 51819011 + 10.52520 NA promoter-TSS (NM_001258403) promoter-TSS (NM_001258403) 18 NM_001258403 9498 Hs.4749 NM_004858 HPRD:05430 SLC4A8 NBC3|NDCBE solute carrier family 4, sodium bicarbonate cotransporter, member 8 protein-coding 13-PTNLD9-TUMOR_peak_6370 chr10 5652815 5653000 + 10.52520 NA Intergenic Intergenic 55651 NR_037164 79754 Hs.445899 NM_024701 HPRD:10667 ASB13 - ankyrin repeat and SOCS box containing 13 protein-coding 13-PTNLD9-TUMOR_peak_20306 chr17 4424530 4424909 + 10.52520 NA intron (NM_001124758, intron 2 of 12) intron (NM_001124758, intron 2 of 12) 22590 NM_001124758 124976 Hs.22824 NM_001124758 SPNS2 - spinster homolog 2 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_54067 chr9 97629613 97629741 + 10.52520 NA intron (NM_032823, intron 5 of 14) intron (NM_032823, intron 5 of 14) 57433 NR_031755 100313780 NR_031755 MIR2278 - microRNA 2278 ncRNA 13-PTNLD9-TUMOR_peak_18888 chr16 28647879 28648140 + 10.52120 NA Intergenic MIRb|SINE|MIR -13102 NM_177536 6817 Hs.567342 NM_001055 HPRD:01372 SULT1A1 HAST1/HAST2|P-PST|PST|ST1A1|ST1A3|STP|STP1|TSPST1 sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1 protein-coding 13-PTNLD9-TUMOR_peak_28147 chr2 114087754 114087978 + 10.52120 NA Intergenic MIRc|SINE|MIR -51368 NM_003466 7849 Hs.469728 NM_003466 HPRD:01335 PAX8 - paired box 8 protein-coding 13-PTNLD9-TUMOR_peak_6640 chr10 21653411 21653668 + 10.52120 NA Intergenic LTR88b|LTR|Gypsy? 132031 NR_031736 100302129 NR_031736 MIR1915 MIRN1915|hsa-mir-1915 microRNA 1915 ncRNA 13-PTNLD9-TUMOR_peak_23275 chr18 55505070 55505412 + 10.52120 NA Intergenic LTR8|LTR|ERV1 -34914 NM_005603 5205 Hs.216623 NM_005603 HPRD:03867 ATP8B1 ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1 ATPase, aminophospholipid transporter, class I, type 8B, member 1 protein-coding 13-PTNLD9-TUMOR_peak_21709 chr17 60771785 60771919 + 10.52120 NA TTS (NM_006039) TTS (NM_006039) -27006 NR_036146 100422923 NR_036146 MIR548W - microRNA 548w ncRNA 13-PTNLD9-TUMOR_peak_21333 chr17 46024441 46024638 + 10.52120 NA 3' UTR (NM_018129, exon 7 of 7) 3' UTR (NM_018129, exon 7 of 7) 5650 NM_018129 55163 Hs.631742 NM_018129 PNPO HEL-S-302|PDXPO pyridoxamine 5'-phosphate oxidase protein-coding 13-PTNLD9-TUMOR_peak_21930 chr17 72376848 72377070 + 10.52120 NA Intergenic Intergenic 13314 NM_181790 350383 Hs.574368 NM_181790 HPRD:16424 GPR142 PGR2 G protein-coupled receptor 142 protein-coding 13-PTNLD9-TUMOR_peak_6799 chr10 29887872 29888103 + 10.52120 NA intron (NM_003174, intron 3 of 35) intron (NM_003174, intron 3 of 35) 3288 NR_030634 100126327 NR_030634 miRBase:MI0005760 MIR938 MIRN938|hsa-mir-938 microRNA 938 ncRNA 13-PTNLD9-TUMOR_peak_43042 chr5 172244027 172244136 + 10.51615 NA Intergenic MIRc|SINE|MIR -17142 NM_001031711 57222 Hs.509163 NM_020462 HPRD:13836 ERGIC1 ERGIC-32|ERGIC32|NET24 endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1 protein-coding 13-PTNLD9-TUMOR_peak_427 chr1 11796917 11797294 + 10.51615 NA intron (NM_001040195, intron 1 of 3) intron (NM_001040195, intron 1 of 3) 963 NM_020350 57085 Hs.464438 NM_020350 HPRD:16379 AGTRAP ATRAP angiotensin II receptor-associated protein protein-coding 13-PTNLD9-TUMOR_peak_19566 chr16 67212144 67212351 + 10.51615 NA exon (NM_001040715, exon 5 of 7) exon (NM_001040715, exon 5 of 7) 4491 NM_003946 8996 Hs.513667 NM_003946 HPRD:05572 NOL3 ARC|FCM|MYP|NOP|NOP30 nucleolar protein 3 (apoptosis repressor with CARD domain) protein-coding 13-PTNLD9-TUMOR_peak_9503 chr11 34368229 34368412 + 10.51615 NA intron (NM_145804, intron 1 of 16) MIR3|SINE|MIR 11235 NM_145804 25841 Hs.23361 NM_145804 HPRD:10624 ABTB2 ABTB2A|BTBD22 ankyrin repeat and BTB (POZ) domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_16114 chr14 69014375 69014611 + 10.51607 NA intron (NM_133509, intron 10 of 10) intron (NM_133509, intron 10 of 10) 246138 NM_004926 677 Hs.85155 NM_004926 HPRD:03041 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein-like 1 protein-coding 13-PTNLD9-TUMOR_peak_53370 chr9 46179212 46179362 + 10.51367 NA Intergenic Intergenic 62344 NR_103714 100289124 Hs.567050 NM_001024608 ENSG00000237198 FAM27E2 FAM27E1 family with sequence similarity 27, member E2 ncRNA 13-PTNLD9-TUMOR_peak_46921 chr7 16169172 16169317 + 10.50531 NA intron (NM_001101417, intron 8 of 8) intron (NM_001101417, intron 8 of 8) -80867 NR_038946 100506025 Hs.649029 NR_038946 ENSG00000229688 ISPD-AS1 - ISPD antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_20205 chr17 855020 855342 + 10.50531 NA intron (NM_022463, intron 1 of 7) intron (NM_022463, intron 1 of 7) 27817 NM_022463 64359 Hs.527989 NM_022463 HPRD:14858 NXN NRX|TRG-4 nucleoredoxin protein-coding 13-PTNLD9-TUMOR_peak_17984 chr15 91445556 91445924 + 10.50531 NA Intergenic CpG -1680 NM_006122 4122 Hs.116459 NM_006122 HPRD:02994 MAN2A2 MANA2X mannosidase, alpha, class 2A, member 2 protein-coding 13-PTNLD9-TUMOR_peak_13981 chr12 118230412 118230597 + 10.50531 NA intron (NM_173598, intron 3 of 19) intron (NM_173598, intron 3 of 19) 175524 NM_173598 283455 Hs.375836 NM_173598 HPRD:13952 KSR2 - kinase suppressor of ras 2 protein-coding 13-PTNLD9-TUMOR_peak_2659 chr1 101491784 101491911 + 10.50531 NA promoter-TSS (NM_015958) promoter-TSS (NM_015958) 445 NR_109849 102606465 Hs.593669 NR_109849 LOC102606465 - uncharterized LOC102606465 ncRNA 13-PTNLD9-TUMOR_peak_43951 chr6 16684016 16684352 + 10.50531 NA intron (NM_001128164, intron 2 of 7) intron (NM_001128164, intron 2 of 7) 77537 NM_001128164 6310 Hs.434961 NM_000332 HPRD:03333 ATXN1 ATX1|D6S504E|SCA1 ataxin 1 protein-coding 13-PTNLD9-TUMOR_peak_18272 chr16 2771081 2771204 + 10.50531 NA promoter-TSS (NM_031948) promoter-TSS (NM_031948) -590 NM_031948 83886 Hs.332878 NM_031948 PRSS27 CAPH2|MPN protease, serine 27 protein-coding 13-PTNLD9-TUMOR_peak_17429 chr15 64298936 64299176 + 10.50445 NA intron (NM_014326, intron 2 of 11) intron (NM_014326, intron 2 of 11) 39465 NM_014326 23604 Hs.237886 NM_014326 HPRD:09905 DAPK2 DRP-1|DRP1 death-associated protein kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_10104 chr11 63299031 63299167 + 10.50445 NA intron (NR_049833, intron 1 of 3) MER66C|LTR|ERV1 -5174 NM_004585 5920 Hs.17466 NM_004585 HPRD:05479 RARRES3 HRASLS4|HRSL4|PLA1/2-3|RIG1|TIG3 retinoic acid receptor responder (tazarotene induced) 3 protein-coding 13-PTNLD9-TUMOR_peak_29733 chr2 211826198 211826351 + 10.50445 NA Intergenic T-rich|Low_complexity|Low_complexity 343979 NR_002763 29034 Hs.658398 NR_002763 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_41189 chr5 70190983 70191138 + 10.50445 NA Intergenic AluYa5|SINE|Alu -5430 NM_021967 8293 Hs.726820 NM_021967 HPRD:04308 SERF1A 4F5|FAM2A|H4F5|SERF1|SMAM1 small EDRK-rich factor 1A (telomeric) protein-coding 13-PTNLD9-TUMOR_peak_28706 chr2 150845973 150846350 + 10.50445 NA Intergenic Intergenic -401831 NM_015702 27249 Hs.5324 NM_015702 HPRD:10781 MMADHC C2orf25|CL25022|cblD methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria protein-coding 13-PTNLD9-TUMOR_peak_34780 chr3 58549487 58549646 + 10.50445 NA TTS (NM_007177) TTS (NM_007177) 13925 NM_001076778 11170 Hs.506357 NM_007177 HPRD:09753 FAM107A DRR1|TU3A family with sequence similarity 107, member A protein-coding 13-PTNLD9-TUMOR_peak_46981 chr7 20104334 20104480 + 10.50445 NA intron (NR_110114, intron 1 of 5) intron (NR_110114, intron 1 of 5) 75642 NR_110114 101927668 Hs.715900 NR_110114 ENSG00000243004 LOC101927668 - uncharacterized LOC101927668 ncRNA 13-PTNLD9-TUMOR_peak_52087 chr8 131515444 131515602 + 10.50445 NA Intergenic LTR8A|LTR|ERV1 -59617 NM_018482 50807 Hs.655552 NM_018482 HPRD:05809 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 13-PTNLD9-TUMOR_peak_10897 chr11 91712044 91712194 + 10.50445 NA Intergenic Intergenic -373143 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10 FAT atypical cadherin 3 protein-coding 13-PTNLD9-TUMOR_peak_13163 chr12 65065181 65065308 + 10.50445 NA intron (NR_040718, intron 1 of 3) intron (NR_040718, intron 1 of 3) -48859 NR_037515 100500856 NR_037515 MIR548Z - microRNA 548z ncRNA 13-PTNLD9-TUMOR_peak_4932 chr1 201228580 201228978 + 10.50343 NA Intergenic Intergenic -23801 NM_001005337 5317 Hs.497350 NM_000299 HPRD:03579 PKP1 B6P plakophilin 1 protein-coding 13-PTNLD9-TUMOR_peak_4082 chr1 160066567 160066818 + 10.50343 NA intron (NM_001206665, intron 2 of 7) intron (NM_001206665, intron 2 of 7) 1747 NM_052868 93185 Hs.332012 NM_052868 HPRD:09438 IGSF8 CD316|CD81P3|EWI-2|EWI2|KCT-4|LIR-D1|PGRL immunoglobulin superfamily, member 8 protein-coding 13-PTNLD9-TUMOR_peak_16739 chr15 20530991 20531095 + 10.50343 NA Intergenic MER34B-int|LTR|ERV1 43046 NR_038836 646096 Hs.448789 NR_038836 CHEK2P2 - checkpoint kinase 2 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_3963 chr1 156675891 156676038 + 10.49718 NA promoter-TSS (NM_001878) promoter-TSS (NM_001878) -356 NM_001199723 1382 Hs.405662 NM_001878 HPRD:08353 CRABP2 CRABP-II|RBP6 cellular retinoic acid binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_49636 chr7 150723935 150724060 + 10.49388 NA Intergenic Intergenic -1512 NM_001282291 11194 Hs.647118 NM_007188 HPRD:10400 ABCB8 EST328128|M-ABC1|MABC1 ATP-binding cassette, sub-family B (MDR/TAP), member 8 protein-coding 13-PTNLD9-TUMOR_peak_26465 chr2 29336781 29337059 + 10.48585 NA promoter-TSS (NR_109844) promoter-TSS (NR_109844) -824 NR_109844 79745 Hs.122927 NM_024692 HPRD:08634 CLIP4 RSNL2 CAP-GLY domain containing linker protein family, member 4 protein-coding 13-PTNLD9-TUMOR_peak_48325 chr7 93220527 93220926 + 10.48585 NA Intergenic L1PA2|LINE|L1 -16684 NM_001164737 799 Hs.489127 NM_001742 HPRD:00239 CALCR CRT|CT-R|CTR|CTR1 calcitonin receptor protein-coding 13-PTNLD9-TUMOR_peak_39080 chr4 111332305 111332491 + 10.48585 NA Intergenic L1PA2|LINE|L1 -64831 NM_001977 2028 Hs.435765 NM_001977 ENPEP APA|CD249|gp160 glutamyl aminopeptidase (aminopeptidase A) protein-coding 13-PTNLD9-TUMOR_peak_14098 chr12 122109838 122109985 + 10.48585 NA Intergenic MER113|DNA|hAT-Charlie -2351 NM_173855 283385 Hs.434154 NM_173855 HPRD:17330 MORN3 - MORN repeat containing 3 protein-coding 13-PTNLD9-TUMOR_peak_35372 chr3 112097960 112098092 + 10.48585 NA Intergenic MLT1J-int|LTR|ERVL-MaLR 46110 NM_005944 4345 Hs.79015 NM_005944 ENSG00000091972 CD200 MOX1|MOX2|MRC|OX-2 CD200 molecule protein-coding 13-PTNLD9-TUMOR_peak_7583 chr10 70821162 70821408 + 10.48585 NA Intergenic Intergenic -26543 NM_002727 5552 Hs.1908 NM_002727 HPRD:01513 SRGN PPG|PRG|PRG1 serglycin protein-coding 13-PTNLD9-TUMOR_peak_32225 chr21 36509227 36509456 + 10.48585 NA Intergenic MER77B|LTR|ERVL -87746 NM_001754 861 Hs.149261 NM_001754 HPRD:01043 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBFA2|EVI-1|PEBP2aB runt-related transcription factor 1 protein-coding 13-PTNLD9-TUMOR_peak_17682 chr15 75497178 75497321 + 10.48127 NA intron (NM_015492, intron 1 of 2) intron (NM_015492, intron 1 of 2) 3028 NM_015492 56905 Hs.17936 NM_015492 HPRD:13154 C15orf39 - chromosome 15 open reading frame 39 protein-coding 13-PTNLD9-TUMOR_peak_22570 chr18 9914925 9915122 + 10.48127 NA intron (NM_194434, intron 1 of 5) CpG 1068 NM_003574 9218 Hs.165195 NM_003574 HPRD:09299 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP (vesicle-associated membrane protein)-associated protein A, 33kDa protein-coding 13-PTNLD9-TUMOR_peak_28048 chr2 111874707 111874824 + 10.48127 NA intron (NM_001142807, intron 17 of 17) intron (NM_001142807, intron 17 of 17) -1600 NR_122074 400997 Hs.652337 NR_122074 HPRD:16971 LOC400997 - uncharacterized LOC400997 ncRNA 13-PTNLD9-TUMOR_peak_10157 chr11 64216267 64216568 + 10.47901 NA promoter-TSS (NR_073177) promoter-TSS (NR_073177) -112 NR_073177 100996455 Hs.634142 NR_073177 ENSG00000181908 LOC100996455 - uncharacterized LOC100996455 ncRNA 13-PTNLD9-TUMOR_peak_18409 chr16 5131264 5131376 + 10.47901 NA intron (NM_019109, intron 10 of 12) intron (NM_019109, intron 10 of 12) 9510 NM_019109 56052 Hs.592086 NM_019109 ALG1 CDG1K|HMAT1|HMT-1|HMT1|MT-1|Mat-1|hMat-1 ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase protein-coding 13-PTNLD9-TUMOR_peak_54159 chr9 100503544 100503928 + 10.47901 NA Intergenic CpG -44045 NM_000380 7507 Hs.654364 NM_000380 HPRD:02045 XPA XP1|XPAC xeroderma pigmentosum, complementation group A protein-coding 13-PTNLD9-TUMOR_peak_22735 chr18 19894506 19894646 + 10.47901 NA Intergenic Intergenic 103302 NM_172241 64693 Hs.406709 NM_022663 HPRD:16395 CTAGE1 CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2 cutaneous T-cell lymphoma-associated antigen 1 protein-coding 13-PTNLD9-TUMOR_peak_2694 chr1 106207254 106207445 + 10.47901 NA Intergenic ERVL-B4-int|LTR|ERVL -1391918 NM_018137 55170 Hs.26006 NM_018137 HPRD:10505 PRMT6 HRMT1L6 protein arginine methyltransferase 6 protein-coding 13-PTNLD9-TUMOR_peak_11552 chr11 126202209 126202445 + 10.47901 NA intron (NM_014026, intron 3 of 5) intron (NM_014026, intron 3 of 5) 23155 NR_033839 399972 Hs.585206 NR_033839 ST3GAL4-AS1 DCPS-AS1 ST3GAL4 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_34964 chr3 72541501 72541673 + 10.47901 NA Intergenic MER91A|DNA|hAT-Tip100 -45813 NM_012234 23429 Hs.7910 NM_012234 RYBP AAP1|DEDAF|YEAF1 RING1 and YY1 binding protein protein-coding 13-PTNLD9-TUMOR_peak_8057 chr10 97026576 97026794 + 10.47901 NA intron (NM_020992, intron 3 of 6) intron (NM_020992, intron 3 of 6) 24220 NM_020992 9124 Hs.368525 NM_020992 HPRD:09326 PDLIM1 CLIM1|CLP-36|CLP36|HEL-S-112|hCLIM1 PDZ and LIM domain 1 protein-coding 13-PTNLD9-TUMOR_peak_53787 chr9 85549907 85550180 + 10.47901 NA Intergenic Intergenic 128000 NM_152573 158158 Hs.129136 NM_152573 HPRD:08337 RASEF RAB45 RAS and EF-hand domain containing protein-coding 13-PTNLD9-TUMOR_peak_11407 chr11 119454941 119455243 + 10.47901 NA Intergenic Intergenic 144343 NM_203286 5818 Hs.334846 NM_002855 HPRD:07200 PVRL1 CD111|CLPED1|ED4|HIgR|HV1S|HVEC|OFC7|PRR|PRR1|PVRR|PVRR1|SK-12|nectin-1 poliovirus receptor-related 1 (herpesvirus entry mediator C) protein-coding 13-PTNLD9-TUMOR_peak_1542 chr1 45053715 45053895 + 10.47901 NA intron (NM_018150, intron 2 of 14) intron (NM_018150, intron 2 of 14) 42640 NR_049849 100847089 NR_049849 MIR5584 - microRNA 5584 ncRNA 13-PTNLD9-TUMOR_peak_37235 chr3 191600233 191600377 + 10.47901 NA Intergenic MIR|SINE|MIR -356114 NR_046596 100873986 Hs.581652 NR_046596 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_36656 chr3 168830080 168830276 + 10.47901 NA intron (NM_001105077, intron 9 of 16) intron (NM_001105077, intron 9 of 16) 33915 NM_001105077 2122 Hs.744090 NM_004991 HPRD:01310 MECOM AML1-EVI-1|EVI1|MDS1|MDS1-EVI1|PRDM3 MDS1 and EVI1 complex locus protein-coding 13-PTNLD9-TUMOR_peak_56397 chrX 117861195 117861607 + 10.47901 NA promoter-TSS (NM_001560) promoter-TSS (NM_001560) -158 NM_001560 3597 Hs.496646 NM_001560 HPRD:02125 IL13RA1 CD213A1|IL-13Ra|NR4 interleukin 13 receptor, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_56655 chrX 152368005 152368341 + 10.47901 NA Intergenic MSTD-int|LTR|ERVL-MaLR 29914 NM_032882 84968 Hs.533301 NM_032882 HPRD:06637 PNMA6A MA6|PNMA6|PNMA6C paraneoplastic Ma antigen family member 6A protein-coding 13-PTNLD9-TUMOR_peak_30374 chr20 8094984 8095117 + 10.47901 NA Intergenic L1PA3|LINE|L1 -17862 NM_182734 23236 Hs.431173 NM_015192 HPRD:06177 PLCB1 EIEE12|PI-PLC|PLC-154|PLC-I|PLC154|PLCB1A|PLCB1B phospholipase C, beta 1 (phosphoinositide-specific) protein-coding 13-PTNLD9-TUMOR_peak_14155 chr12 123198083 123198519 + 10.47901 NA Intergenic Intergenic 3138 NM_006018 8843 Hs.458425 NM_006018 HPRD:06917 HCAR3 GPR109B|HCA3|HM74|PUMAG|Puma-g hydroxycarboxylic acid receptor 3 protein-coding 13-PTNLD9-TUMOR_peak_39179 chr4 119947070 119947448 + 10.47901 NA intron (NM_001286755, intron 2 of 2) intron (NM_001286755, intron 2 of 2) -109680 NM_016599 51778 Hs.732122 NM_016599 HPRD:05724 MYOZ2 C4orf5|CMH16|CS-1 myozenin 2 protein-coding 13-PTNLD9-TUMOR_peak_38775 chr4 84788133 84788280 + 10.47901 NA Intergenic Intergenic 330736 NM_032717 84803 Hs.99196 NM_032717 HPRD:14417 AGPAT9 AGPAT 10|AGPAT8|GPAT3|LPAAT-theta|MAG1 1-acylglycerol-3-phosphate O-acyltransferase 9 protein-coding 13-PTNLD9-TUMOR_peak_25219 chr19 47551175 47551336 + 10.47864 NA intron (NM_017854, intron 1 of 2) intron (NM_017854, intron 1 of 2) 627 NM_017854 54958 Hs.105606 NM_017854 HPRD:07920 TMEM160 - transmembrane protein 160 protein-coding 13-PTNLD9-TUMOR_peak_34058 chr3 23448201 23448336 + 10.47665 NA intron (NR_039621, intron 1 of 2) intron (NR_039621, intron 1 of 2) 72642 NR_039621 100616384 NR_039621 MIR548AC - microRNA 548ac ncRNA 13-PTNLD9-TUMOR_peak_8338 chr10 112424873 112425033 + 10.47665 NA intron (NM_001134363, intron 1 of 13) L1MC5|LINE|L1 20798 NM_001134363 282996 Hs.116630 NM_001134363 ENSG00000203867 RBM20 - RNA binding motif protein 20 protein-coding 13-PTNLD9-TUMOR_peak_39204 chr4 121787243 121787449 + 10.47665 NA intron (NM_001300824, intron 2 of 13) intron (NM_001300824, intron 2 of 13) 56675 NM_018699 11107 Hs.666782 NM_018699 HPRD:17902 PRDM5 BCS2|PFM2 PR domain containing 5 protein-coding 13-PTNLD9-TUMOR_peak_19618 chr16 68065927 68066224 + 10.47665 NA intron (NM_017803, intron 2 of 16) intron (NM_017803, intron 2 of 16) -8305 NM_018380 55794 Hs.458313 NM_018380 HPRD:06357 DDX28 MDDX28 DEAD (Asp-Glu-Ala-Asp) box polypeptide 28 protein-coding 13-PTNLD9-TUMOR_peak_54623 chr9 122817622 122817759 + 10.47665 NA Intergenic L1PA2|LINE|L1 189638 NR_029604 406939 NR_029604 miRBase:MI0000262 MIR147A MIR147|MIRN147|hsa-mir-147a microRNA 147a ncRNA 13-PTNLD9-TUMOR_peak_45907 chr6 111910633 111910912 + 10.47665 NA intron (NR_028338, intron 3 of 9) intron (NR_028338, intron 3 of 9) 16705 NR_028338 10758 Hs.561514 NM_147200 HPRD:06129 TRAF3IP2 ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13 TRAF3 interacting protein 2 protein-coding 13-PTNLD9-TUMOR_peak_12776 chr12 51664841 51665011 + 10.47665 NA promoter-TSS (NM_001033873) promoter-TSS (NM_001033873) -724 NM_001031628 57228 Hs.652389 NM_001031628 HPRD:14256 SMAGP hSMAGP small cell adhesion glycoprotein protein-coding 13-PTNLD9-TUMOR_peak_46112 chr6 136724878 136725014 + 10.47665 NA intron (NM_003980, intron 3 of 17) intron (NM_003980, intron 3 of 17) 63067 NM_001198615 9053 Hs.486548 NM_003980 HPRD:04982 MAP7 E-MAP-115|EMAP115 microtubule-associated protein 7 protein-coding 13-PTNLD9-TUMOR_peak_54192 chr9 101076733 101076886 + 10.47665 NA intron (NM_005458, intron 13 of 18) intron (NM_005458, intron 13 of 18) -58806 NM_001267571 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family, member 2 protein-coding 13-PTNLD9-TUMOR_peak_55657 chrX 24483134 24483412 + 10.47665 NA promoter-TSS (NM_005391) promoter-TSS (NM_005391) -71 NM_001142386 5165 Hs.296031 NM_005391 HPRD:03956 PDK3 CMTX6|GS1-358P8.4 pyruvate dehydrogenase kinase, isozyme 3 protein-coding 13-PTNLD9-TUMOR_peak_53319 chr9 43513963 43514187 + 10.47665 NA Intergenic Intergenic 116655 NM_001145196 389730 Hs.455299 NM_001145196 ENSG00000185775 SPATA31A6 FAM75A6 SPATA31 subfamily A, member 6 protein-coding 13-PTNLD9-TUMOR_peak_54870 chr9 131629884 131630200 + 10.47665 NA intron (NM_001287390, intron 1 of 14) L1MB5|LINE|L1 14312 NM_001287390 883 Hs.495250 NM_004059 HPRD:02769 CCBL1 GTK|KAT1|KATI cysteine conjugate-beta lyase, cytoplasmic protein-coding 13-PTNLD9-TUMOR_peak_33575 chr3 4573211 4573373 + 10.47665 NA intron (NM_001168272, intron 4 of 60) L2c|LINE|L2 38260 NM_002222 3708 Hs.567295 NM_002222 HPRD:00925 ITPR1 ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29 inositol 1,4,5-trisphosphate receptor, type 1 protein-coding 13-PTNLD9-TUMOR_peak_46291 chr6 150590913 150591185 + 10.47665 NA Intergenic Intergenic -98979 NM_203395 389434 Hs.310225 NM_203395 HPRD:16668 IYD C6orf71|DEHAL1|TDH4|dJ422F24.1 iodotyrosine deiodinase protein-coding 13-PTNLD9-TUMOR_peak_1958 chr1 59522989 59523259 + 10.47665 NA intron (NR_110626, intron 2 of 2) intron (NR_110626, intron 2 of 2) 36976 NR_110626 101926925 NR_110626 LINC01358 - long intergenic non-protein coding RNA 1358 ncRNA 13-PTNLD9-TUMOR_peak_15584 chr14 37641480 37641625 + 10.47665 NA exon (NM_001171170, exon 1 of 11) exon (NM_001171170, exon 1 of 11) 313 NM_030631 89874 Hs.730857 NM_030631 SLC25A21 ODC|ODC1 solute carrier family 25 (mitochondrial oxoadipate carrier), member 21 protein-coding 13-PTNLD9-TUMOR_peak_50506 chr8 29522710 29522970 + 10.47665 NA Intergenic Intergenic 82785 NR_026765 619351 Hs.566911 NR_026765 ENSG00000251191 LINC00589 C8orf75 long intergenic non-protein coding RNA 589 ncRNA 13-PTNLD9-TUMOR_peak_8616 chr10 130713029 130713484 + 10.47665 NA Intergenic Intergenic -552198 NM_002412 4255 Hs.501522 NM_002412 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 13-PTNLD9-TUMOR_peak_55635 chrX 22154479 22154725 + 10.47665 NA intron (NM_001282754, intron 12 of 20) intron (NM_001282754, intron 12 of 20) 36498 NR_046639 100873942 Hs.633194 NR_046639 ENSG00000224204 PHEX-AS1 - PHEX antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_46173 chr6 142621967 142622154 + 10.47665 NA promoter-TSS (NM_198569) promoter-TSS (NM_198569) -996 NM_001032394 57211 Hs.743302 NM_020455 HPRD:17059 GPR126 APG1|DREG|PS1TP2|VIGR G protein-coupled receptor 126 protein-coding 13-PTNLD9-TUMOR_peak_6905 chr10 33848101 33848251 + 10.47665 NA Intergenic Intergenic 213432 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 13-PTNLD9-TUMOR_peak_37191 chr3 189772106 189772352 + 10.47665 NA intron (NM_001134418, intron 1 of 14) L3|LINE|CR1 66679 NM_018192 55214 Hs.374191 NM_018192 HPRD:17270 LEPREL1 MCVD|MLAT4|P3H2 leprecan-like 1 protein-coding 13-PTNLD9-TUMOR_peak_19275 chr16 48478592 48478833 + 10.47665 NA Intergenic Intergenic -59483 NM_003031 6477 Hs.706828 NM_003031 HPRD:03736 SIAH1 SIAH1A siah E3 ubiquitin protein ligase 1 protein-coding 13-PTNLD9-TUMOR_peak_14870 chr13 76209948 76210171 + 10.47665 NA promoter-TSS (NR_120412) promoter-TSS (NR_120412) 71 NR_120411 101927155 Hs.564550 NR_120410 ENSG00000261105 LMO7-AS1 UCHL3-AS1 LMO7 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_836 chr1 28201761 28202097 + 10.46778 NA intron (NM_004848, intron 1 of 4) intron (NM_004848, intron 1 of 4) 2875 NM_001039477 9473 Hs.10649 NM_004848 HPRD:12728 THEMIS2 C1orf38|ICB-1 thymocyte selection associated family member 2 protein-coding 13-PTNLD9-TUMOR_peak_42382 chr5 141093246 141093432 + 10.46778 NA Intergenic Intergenic -31539 NM_022481 64411 Hs.726187 NM_022481 HPRD:09441 ARAP3 CENTD3|DRAG1 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3 protein-coding 13-PTNLD9-TUMOR_peak_44550 chr6 31619739 31620018 + 10.46778 NA promoter-TSS (NR_045828).5 promoter-TSS (NR_045828).5 292 NM_001098534 7917 Hs.440900 NM_004639 HPRD:00808 BAG6 BAG-6|BAT3|D6S52E|G3 BCL2-associated athanogene 6 protein-coding 13-PTNLD9-TUMOR_peak_7847 chr10 80828683 80828827 + 10.46778 NA promoter-TSS (NM_020338) promoter-TSS (NM_020338) -37 NM_020338 57178 Hs.193118 NM_020338 HPRD:12115 ZMIZ1 MIZ|RAI17|TRAFIP10|ZIMP10|hZIMP10 zinc finger, MIZ-type containing 1 protein-coding 13-PTNLD9-TUMOR_peak_37313 chr3 194054458 194054715 + 10.46778 NA Intergenic CpG 17471 NM_001080513 1370 Hs.528368 NM_001309 HPRD:11928 CPN2 ACBP carboxypeptidase N, polypeptide 2 protein-coding 13-PTNLD9-TUMOR_peak_18000 chr15 92491598 92491891 + 10.46297 NA intron (NM_013272, intron 2 of 9) intron (NM_013272, intron 2 of 9) 94806 NM_013272 28232 Hs.311187 NM_013272 HPRD:07502 SLCO3A1 OATP-D|OATP3A1|OATPD|SLC21A11 solute carrier organic anion transporter family, member 3A1 protein-coding 13-PTNLD9-TUMOR_peak_33278 chr22 39378093 39378448 + 10.46297 NA promoter-TSS (NM_004900) promoter-TSS (NM_004900) -134 NM_001270411 9582 Hs.226307 NM_004900 HPRD:06169 APOBEC3B A3B|APOBEC1L|ARCD3|ARP4|DJ742C19.2|PHRBNL|bK150C2.2 apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B protein-coding 13-PTNLD9-TUMOR_peak_46897 chr7 12106320 12106463 + 10.46297 NA Intergenic LTR10A|LTR|ERV1 -144457 NM_001134232 54664 Hs.396358 NM_018374 TMEM106B - transmembrane protein 106B protein-coding 13-PTNLD9-TUMOR_peak_40383 chr5 14420401 14420526 + 10.46297 NA intron (NM_007118, intron 34 of 56) intron (NM_007118, intron 34 of 56) -161428 NM_019018 54491 Hs.155085 NM_019018 FAM105A NET20 family with sequence similarity 105, member A protein-coding 13-PTNLD9-TUMOR_peak_8039 chr10 95226242 95226369 + 10.46297 NA intron (NM_133337, intron 1 of 52) intron (NM_133337, intron 1 of 52) 15769 NM_133337 26509 Hs.602086 NM_013451 HPRD:06857 MYOF FER1L3 myoferlin protein-coding 13-PTNLD9-TUMOR_peak_32946 chr22 24542345 24542601 + 10.46297 NA intron (NM_012295, intron 29 of 36) intron (NM_012295, intron 29 of 36) -34971 NM_019601 56241 Hs.131819 NM_019601 HPRD:18132 SUSD2 BK65A6.2 sushi domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_49159 chr7 132201314 132201488 + 10.46297 NA intron (NM_181775, intron 2 of 4) L2b|LINE|L2 59922 NM_020911 91584 Hs.511454 NM_020911 HPRD:10901 PLXNA4 FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003 plexin A4 protein-coding 13-PTNLD9-TUMOR_peak_15007 chr13 100084960 100085349 + 10.46297 NA Intergenic Intergenic -26600 NR_039765 100616144 NR_039765 MIR548AN - microRNA 548an ncRNA 13-PTNLD9-TUMOR_peak_52133 chr8 133333743 133334055 + 10.46297 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) 125610 NM_001204824 3786 Hs.374023 NM_004519 HPRD:09077 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel, KQT-like subfamily, member 3 protein-coding 13-PTNLD9-TUMOR_peak_23079 chr18 44849624 44849949 + 10.46297 NA Intergenic Intergenic -74232 NM_001278063 652991 Hs.585834 NM_001037802 ENSG00000215474 SKOR2 CORL2|FUSSEL18 SKI family transcriptional corepressor 2 protein-coding 13-PTNLD9-TUMOR_peak_10511 chr11 71300579 71300861 + 10.46297 NA Intergenic HERVE-int|LTR|ERV1 -6799 NM_001005405 440051 Hs.679617 NM_001005405 HPRD:17248 KRTAP5-11 KRTAP5-5|KRTAP5-6|KRTAP5.11 keratin associated protein 5-11 protein-coding 13-PTNLD9-TUMOR_peak_37644 chr4 3049258 3049551 + 10.46297 NA Intergenic LTR13_|LTR|ERVK -26833 NM_002111 3064 Hs.518450 NM_002111 HPRD:00883 HTT HD|IT15 huntingtin protein-coding 13-PTNLD9-TUMOR_peak_44432 chr6 30075671 30075794 + 10.46297 NA intron (NM_007028, intron 6 of 8) intron (NM_007028, intron 6 of 8) 5135 NM_007028 11074 Hs.493275 NM_007028 HPRD:10281 TRIM31 C6orf13|HCG1|HCGI|RNF tripartite motif containing 31 protein-coding 13-PTNLD9-TUMOR_peak_55994 chrX 61722657 61722885 + 10.45724 NA Intergenic ALR/Alpha|Satellite|centr 848447 NM_001012968 139886 Hs.612782 NM_001012968 HPRD:12556 SPIN4 - spindlin family, member 4 protein-coding 13-PTNLD9-TUMOR_peak_7497 chr10 63810895 63811118 + 10.45678 NA intron (NM_001244638, intron 2 of 6) intron (NM_001244638, intron 2 of 6) 2036 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT rich interactive domain 5B (MRF1-like) protein-coding 13-PTNLD9-TUMOR_peak_23427 chr18 68048889 68049061 + 10.45678 NA non-coding (NR_110764, exon 3 of 3) non-coding (NR_110764, exon 3 of 3) 2852 NR_110764 101060542 Hs.586967 NR_110764 ENSG00000266278 LOC101060542 - uncharacterized LOC101060542 ncRNA 13-PTNLD9-TUMOR_peak_45086 chr6 43460114 43460476 + 10.45678 NA intron (NM_001146017, intron 1 of 9) intron (NM_001146017, intron 1 of 9) 2973 NM_001146017 93643 Hs.520145 NM_080604 HPRD:10269 TJAP1 PILT|TJP4 tight junction associated protein 1 (peripheral) protein-coding 13-PTNLD9-TUMOR_peak_27425 chr2 85660930 85661205 + 10.45423 NA promoter-TSS (NM_198482) promoter-TSS (NM_198482) -851 NM_198482 284948 Hs.209542 NM_198482 HPRD:14156 SH2D6 - SH2 domain containing 6 protein-coding 13-PTNLD9-TUMOR_peak_15214 chr14 19892257 19892406 + 10.45423 NA intron (NR_122112, intron 7 of 7) intron (NR_122112, intron 7 of 7) -2038 NR_073459 414763 Hs.617315 NR_073459 ENSG00000215394 BMS1P18 C14orf17|LINC00516 BMS1 pseudogene 18 pseudo 13-PTNLD9-TUMOR_peak_49783 chr7 155021975 155022247 + 10.45184 NA Intergenic Intergenic -67375 NM_198337 3638 Hs.520819 NM_005542 HPRD:03633 INSIG1 CL-6|CL6 insulin induced gene 1 protein-coding 13-PTNLD9-TUMOR_peak_41204 chr5 70751741 70752161 + 10.45184 NA intron (NM_018429, intron 1 of 38) intron (NM_018429, intron 1 of 38) 509 NM_018429 55814 Hs.258272 NM_018429 HPRD:06114 BDP1 HSA238520|TAF3B1|TFC5|TFIIIB''|TFIIIB150|TFIIIB90|TFNR B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB protein-coding 13-PTNLD9-TUMOR_peak_54345 chr9 110390706 110391196 + 10.45184 NA Intergenic L2b|LINE|L2 -138904 NM_004235 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel-like factor 4 (gut) protein-coding 13-PTNLD9-TUMOR_peak_6881 chr10 32430570 32430698 + 10.44985 NA Intergenic Intergenic -85263 NM_004521 3799 Hs.327736 NM_004521 HPRD:07214 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 13-PTNLD9-TUMOR_peak_26853 chr2 47304047 47304326 + 10.44163 NA TTS (NM_020458) TTS (NM_020458) 78331 NM_173649 285051 Hs.531575 NM_173649 HPRD:08273 C2orf61 - chromosome 2 open reading frame 61 protein-coding 13-PTNLD9-TUMOR_peak_6149 chr1 245534609 245534807 + 10.43309 NA intron (NM_018012, intron 3 of 14) intron (NM_018012, intron 3 of 14) 216421 NM_018012 55083 Hs.368096 NM_018012 ENSG00000162849 KIF26B - kinesin family member 26B protein-coding 13-PTNLD9-TUMOR_peak_38935 chr4 99581411 99581544 + 10.43309 NA Intergenic Intergenic -1665 NM_005723 10098 Hs.118118 NM_005723 HPRD:15513 TSPAN5 NET-4|NET4|TM4SF9|TSPAN-5 tetraspanin 5 protein-coding 13-PTNLD9-TUMOR_peak_54535 chr9 117168009 117168112 + 10.43309 NA intron (NM_001083885, intron 9 of 11) intron (NM_001083885, intron 9 of 11) -11375 NM_030767 80709 Hs.494895 NM_030767 HPRD:16148 AKNA - AT-hook transcription factor protein-coding 13-PTNLD9-TUMOR_peak_31012 chr20 37671014 37671153 + 10.43309 NA Intergenic Intergenic 80102 NM_021931 60625 Hs.444520 NM_021931 HPRD:13145 DHX35 C20orf15|DDX35|KAIA0875 DEAH (Asp-Glu-Ala-His) box polypeptide 35 protein-coding 13-PTNLD9-TUMOR_peak_9965 chr11 60599243 60599556 + 10.43309 NA Intergenic Intergenic -10030 NM_024098 79080 Hs.4253 NM_024098 HPRD:08322 CCDC86 - coiled-coil domain containing 86 protein-coding 13-PTNLD9-TUMOR_peak_10426 chr11 68883176 68883356 + 10.43309 NA Intergenic Intergenic 55764 NR_104161 338694 Hs.564235 NR_104161 ENSG00000261070 LOC338694 - uncharacterized LOC338694 ncRNA 13-PTNLD9-TUMOR_peak_20126 chr16 89436444 89436779 + 10.43309 NA intron (NM_001256182, intron 3 of 13) intron (NM_001256182, intron 3 of 13) 49070 NM_001242885 100287036 Hs.656995 NM_001242885 LOC100287036 - uncharacterized LOC100287036 protein-coding 13-PTNLD9-TUMOR_peak_39800 chr4 164415667 164415862 + 10.43309 NA promoter-TSS (NM_018352) promoter-TSS (NM_018352) 91 NM_018352 55319 Hs.267446 NM_018352 HPRD:07739 TMA16 C4orf43 translation machinery associated 16 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_545 chr1 16950491 16950832 + 10.43309 NA intron (NR_026752, intron 5 of 6) intron (NR_026752, intron 5 of 6) 6740 NR_026752 84809 Hs.631865 NR_026752 ENSG00000215908 CROCCP2 CROCCL1 ciliary rootlet coiled-coil, rootletin pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_32952 chr22 24655599 24655757 + 10.43309 NA intron (NR_003714, intron 4 of 6) intron (NR_003714, intron 4 of 6) 8089 NR_003714 29774 Hs.534980 NM_014549 HPRD:16807 POM121L9P DKFZP434P211|UNQ2565 POM121 transmembrane nucleoporin-like 9, pseudogene pseudo 13-PTNLD9-TUMOR_peak_7937 chr10 88471052 88471222 + 10.43309 NA intron (NM_001171610, intron 9 of 13) CpG 42711 NM_007078 11155 Hs.657271 NM_007078 HPRD:16172 LDB3 CMD1C|CMPD3|CYPHER|LDB3Z1|LDB3Z4|LVNC3|MFM4|ORACLE|PDLIM6|ZASP LIM domain binding 3 protein-coding 13-PTNLD9-TUMOR_peak_33555 chr3 3110168 3110423 + 10.43309 NA 3' UTR (NM_000564, exon 13 of 13) 3' UTR (NM_000564, exon 13 of 13) -7466 NR_046554 100873975 Hs.581502 NR_046554 CNTN4-AS1 - CNTN4 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_4784 chr1 186181807 186181923 + 10.43309 NA intron (NR_031642, intron 2 of 3) intron (NR_031642, intron 2 of 3) -83540 NM_001127709 10216 Hs.647723 NM_005807 HPRD:05047 PRG4 CACP|HAPO|JCAP|MSF|SZP|bG174L6.2 proteoglycan 4 protein-coding 13-PTNLD9-TUMOR_peak_20636 chr17 19289724 19290056 + 10.43309 NA intron (NM_002404, intron 2 of 5) intron (NM_002404, intron 2 of 5) 642 NM_002404 4239 Hs.296049 NM_002404 HPRD:02789 MFAP4 - microfibrillar-associated protein 4 protein-coding 13-PTNLD9-TUMOR_peak_9530 chr11 35121006 35121163 + 10.43309 NA Intergenic Intergenic 38495 NR_120528 100507144 Hs.673491 NR_120528 ENSG00000255521 LOC100507144 - uncharacterized LOC100507144 ncRNA 13-PTNLD9-TUMOR_peak_13966 chr12 117596795 117597006 + 10.43309 NA intron (NM_033624, intron 9 of 11) intron (NM_033624, intron 9 of 11) 31400 NM_033624 23014 Hs.740376 NM_015002 HPRD:09948 FBXO21 FBX21 F-box protein 21 protein-coding 13-PTNLD9-TUMOR_peak_12818 chr12 52609443 52609677 + 10.43003 NA intron (NR_027358, intron 3 of 4) intron (NR_027358, intron 3 of 4) 4846 NR_027358 283404 Hs.662443 NR_027358 ENSG00000258279 LINC00592 - long intergenic non-protein coding RNA 592 ncRNA 13-PTNLD9-TUMOR_peak_5060 chr1 203103116 203103323 + 10.43003 NA intron (NM_001048230, intron 2 of 2) MIR3|SINE|MIR 6383 NM_001048230 134 Hs.77867 NM_000674 HPRD:00042 ADORA1 RDC7 adenosine A1 receptor protein-coding 13-PTNLD9-TUMOR_peak_1726 chr1 49085234 49085483 + 10.43003 NA intron (NM_032785, intron 9 of 13) intron (NM_032785, intron 9 of 13) -147478 NM_019073 54558 Hs.538103 NM_019073 HPRD:15430 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 13-PTNLD9-TUMOR_peak_47478 chr7 50599106 50599296 + 10.43003 NA promoter-TSS (NR_033845) promoter-TSS (NR_033845) -256 NR_033845 100129427 Hs.680434 NR_033845 ENSG00000226122 DDC-AS1 - DDC antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_8126 chr10 99582308 99582430 + 10.43003 NA Intergenic MIR3|SINE|MIR 27186 NR_108035 100505561 Hs.351904 NR_108035 LINC00866 - long intergenic non-protein coding RNA 866 ncRNA 13-PTNLD9-TUMOR_peak_54689 chr9 124815791 124816218 + 10.43003 NA intron (NM_001139442, intron 1 of 8) intron (NM_001139442, intron 1 of 8) 39881 NM_001139442 158135 Hs.438937 NM_194252 HPRD:10047 TTLL11 C9orf20|bA244O19.1 tubulin tyrosine ligase-like family, member 11 protein-coding 13-PTNLD9-TUMOR_peak_27705 chr2 96426922 96427080 + 10.43003 NA Intergenic Intergenic 65728 NR_103734 150759 Hs.503463 NR_103734 LINC00342 NCRNA00342 long intergenic non-protein coding RNA 342 ncRNA 13-PTNLD9-TUMOR_peak_209 chr1 6661281 6661602 + 10.42979 NA intron (NM_014851, intron 1 of 3) intron (NM_014851, intron 1 of 3) 1488 NM_014851 9903 Hs.7764 NM_014851 HPRD:17239 KLHL21 - kelch-like family member 21 protein-coding 13-PTNLD9-TUMOR_peak_4760 chr1 185226714 185226900 + 10.42979 NA intron (NM_017673, intron 16 of 18) L1PA2|LINE|L1 59654 NM_006469 10625 Hs.497183 NM_006469 HPRD:10004 IVNS1ABP FLARA3|HSPC068|KLHL39|ND1|NS-1|NS1-BP|NS1BP influenza virus NS1A binding protein protein-coding 13-PTNLD9-TUMOR_peak_53289 chr9 41954801 41955189 + 10.42729 NA promoter-TSS (NR_015363) promoter-TSS (NR_015363) 81 NR_015363 389741 Hs.380240 NM_203448 GLIDR LINC01172 glioblastoma down-regulated RNA ncRNA 13-PTNLD9-TUMOR_peak_41120 chr5 67616011 67616178 + 10.42712 NA Intergenic Intergenic 27698 NM_001242466 5295 Hs.132225 NM_181504 HPRD:01381 PIK3R1 AGM7|GRB1|p85|p85-ALPHA phosphoinositide-3-kinase, regulatory subunit 1 (alpha) protein-coding 13-PTNLD9-TUMOR_peak_28881 chr2 161064728 161064898 + 10.42712 NA Intergenic Intergenic -7989 NM_001282388 3694 Hs.470399 NM_000888 HPRD:00947 ITGB6 - integrin, beta 6 protein-coding 13-PTNLD9-TUMOR_peak_6709 chr10 24755287 24755476 + 10.42712 NA promoter-TSS (NM_001282770) promoter-TSS (NM_001282770) -53 NM_001282770 56243 Hs.445885 NM_019590 HPRD:11132 KIAA1217 SKT KIAA1217 protein-coding 13-PTNLD9-TUMOR_peak_35665 chr3 124844617 124844995 + 10.42712 NA intron (NM_024628, intron 6 of 13) intron (NM_024628, intron 6 of 13) 25590 NR_049815 100847039 NR_049815 MIR5092 - microRNA 5092 ncRNA 13-PTNLD9-TUMOR_peak_50943 chr8 54798535 54798809 + 10.42566 NA intron (NR_104579, intron 1 of 3) intron (NR_104579, intron 1 of 3) 5240 NR_104579 8601 Hs.368733 NM_003702 HPRD:06225 RGS20 RGSZ1|ZGAP1|g(z)GAP|gz-GAP regulator of G-protein signaling 20 protein-coding 13-PTNLD9-TUMOR_peak_42475 chr5 144938595 144938810 + 10.42566 NA Intergenic AluY|SINE|Alu 276230 NM_138492 153768 Hs.314261 NM_138492 HPRD:14479 PRELID2 - PRELI domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_5811 chr1 231181199 231181474 + 10.42566 NA Intergenic MIRb|SINE|MIR -5341 NM_198552 375061 Hs.38516 NM_198552 HPRD:11845 FAM89A C1orf153 family with sequence similarity 89, member A protein-coding 13-PTNLD9-TUMOR_peak_44772 chr6 35393148 35393341 + 10.42566 NA TTS (NM_177435) TTS (NM_177435) -26894 NM_021922 2178 Hs.302003 NM_021922 HPRD:02943 FANCE FACE|FAE Fanconi anemia, complementation group E protein-coding 13-PTNLD9-TUMOR_peak_947 chr1 32028668 32028881 + 10.42566 NA Intergenic MER41B|LTR|ERV1 -13312 NM_001204414 64129 Hs.199368 NM_022164 HPRD:07122 TINAGL1 ARG1|LCN7|LIECG3|TINAGRP tubulointerstitial nephritis antigen-like 1 protein-coding 13-PTNLD9-TUMOR_peak_4775 chr1 185543653 185543844 + 10.42566 NA intron (NR_110793, intron 2 of 3) intron (NR_110793, intron 2 of 3) 53872 NR_110793 101929093 Hs.535227 NR_110793 ENSG00000228309 LINC01350 GS1-204I12.1 long intergenic non-protein coding RNA 1350 ncRNA 13-PTNLD9-TUMOR_peak_54786 chr9 129479400 129479651 + 10.42566 NA Intergenic LTR5A|LTR|ERVK -87760 NM_014007 23099 Hs.355581 NM_014007 HPRD:08346 ZBTB43 ZBTB22B|ZNF-X|ZNF297B zinc finger and BTB domain containing 43 protein-coding 13-PTNLD9-TUMOR_peak_54582 chr9 118863941 118864064 + 10.42566 NA Intergenic Intergenic -52069 NM_002581 5069 Hs.643599 NM_002581 HPRD:01448 PAPPA ASBABP2|DIPLA1|IGFBP-4ase|PAPA|PAPP-A|PAPPA1 pregnancy-associated plasma protein A, pappalysin 1 protein-coding 13-PTNLD9-TUMOR_peak_7370 chr10 52156854 52156974 + 10.42566 NA intron (NM_147156, intron 6 of 10) intron (NM_147156, intron 6 of 10) -148544 NM_001143974 56624 Hs.512645 NM_019893 ENSG00000188611 ASAH2 BCDase|HNAC1|LCDase|N-CDase|NCDase N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2 protein-coding 13-PTNLD9-TUMOR_peak_17621 chr15 73680724 73681066 + 10.42566 NA Intergenic Intergenic -19290 NM_005477 10021 Hs.86941 NM_005477 HPRD:09240 HCN4 SSS2 hyperpolarization activated cyclic nucleotide-gated potassium channel 4 protein-coding 13-PTNLD9-TUMOR_peak_17150 chr15 43425648 43425906 + 10.42566 NA promoter-TSS (NM_024956) promoter-TSS (NM_024956) 55 NM_024956 80021 Hs.511175 NM_024956 HPRD:08669 TMEM62 - transmembrane protein 62 protein-coding 13-PTNLD9-TUMOR_peak_31605 chr20 53260300 53260610 + 10.42566 NA intron (NM_177959, intron 7 of 7) intron (NM_177959, intron 7 of 7) 168198 NM_177959 55816 Hs.473133 NM_018431 HPRD:16317 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 13-PTNLD9-TUMOR_peak_18781 chr16 23436058 23436173 + 10.42566 NA exon (NM_153603, exon 7 of 17) exon (NM_153603, exon 7 of 17) 28397 NM_153603 91949 Hs.185807 NM_153603 HPRD:07373 COG7 CDG2E component of oligomeric golgi complex 7 protein-coding 13-PTNLD9-TUMOR_peak_9011 chr11 9622293 9622421 + 10.42566 NA Intergenic L2c|LINE|L2 26123 NM_001143976 7465 Hs.249441 NM_003390 HPRD:01907 WEE1 WEE1A|WEE1hu WEE1 G2 checkpoint kinase protein-coding 13-PTNLD9-TUMOR_peak_26120 chr2 11043623 11043936 + 10.42566 NA Intergenic SVA_F|Other|Other -8284 NM_002236 3754 Hs.23735 NM_002236 HPRD:04808 KCNF1 IK8|KCNF|KV5.1|kH1 potassium voltage-gated channel, subfamily F, member 1 protein-coding 13-PTNLD9-TUMOR_peak_2163 chr1 68810016 68810194 + 10.42198 NA Intergenic MER103C|DNA|hAT-Charlie 105537 NM_000329 6121 Hs.2133 NM_000329 HPRD:01569 RPE65 BCO3|LCA2|RP20|mRPE65|rd12|sRPE65 retinal pigment epithelium-specific protein 65kDa protein-coding 13-PTNLD9-TUMOR_peak_47285 chr7 40958559 40958741 + 10.42198 NA Intergenic L2c|LINE|L2 60887 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 13-PTNLD9-TUMOR_peak_40340 chr5 11414217 11414536 + 10.42198 NA intron (NM_001288717, intron 3 of 20) MLT1D|LTR|ERVL-MaLR 174653 NM_001288715 1501 Hs.314543 NM_001332 HPRD:09181 CTNND2 GT24|NPRAP catenin (cadherin-associated protein), delta 2 protein-coding 13-PTNLD9-TUMOR_peak_603 chr1 20608423 20608617 + 10.42198 NA Intergenic L2b|LINE|L2 -8892 NM_001039500 127731 Hs.205178 NM_144623 HPRD:08732 VWA5B1 - von Willebrand factor A domain containing 5B1 protein-coding 13-PTNLD9-TUMOR_peak_17555 chr15 70315648 70315826 + 10.42198 NA Intergenic Intergenic 56070 NR_030714 693214 NR_030714 MIR629 MIRN629|hsa-mir-629 microRNA 629 ncRNA 13-PTNLD9-TUMOR_peak_48727 chr7 105358964 105359303 + 10.42198 NA intron (NM_020725, intron 3 of 11) intron (NM_020725, intron 3 of 11) -39524 NM_138495 222255 Hs.745056 NM_020725 HPRD:12508 ATXN7L1 ATXN7L4 ataxin 7-like 1 protein-coding 13-PTNLD9-TUMOR_peak_47839 chr7 72266725 72266879 + 10.42198 NA intron (NM_001145440, intron 6 of 14) intron (NM_001145440, intron 6 of 14) 32011 NM_001145440 441250 Hs.488614 NM_001145440 ENSG00000254184 TYW1B LINC00069|NCRNA00069|RSAFD2 tRNA-yW synthesizing protein 1 homolog B (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_6163 chr1 246161217 246161474 + 10.42198 NA intron (NM_022743, intron 5 of 11) intron (NM_022743, intron 5 of 11) 419369 NM_022743 64754 Hs.567571 NM_022743 HPRD:12297 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_38835 chr4 88312339 88312584 + 10.42198 NA promoter-TSS (NM_016245) promoter-TSS (NM_016245) -6 NM_016245 51170 Hs.594923 NM_016245 HPRD:10881 HSD17B11 17-BETA-HSD11|17-BETA-HSDXI|17BHSD11|DHRS8|PAN1B|RETSDR2|SDR16C2 hydroxysteroid (17-beta) dehydrogenase 11 protein-coding 13-PTNLD9-TUMOR_peak_51672 chr8 117886442 117886581 + 10.42198 NA promoter-TSS (NR_033886) promoter-TSS (NR_033886) -152 NR_033886 644660 Hs.706174 NR_033886 ENSG00000253327 RAD21-AS1 C8orf81|NCRNA00255 RAD21 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_33670 chr3 9118844 9118981 + 10.42198 NA intron (NM_001033117, intron 4 of 21) intron (NM_001033117, intron 4 of 21) -113753 NM_020165 56852 Hs.375684 NM_020165 HPRD:09242 RAD18 RNF73 RAD18 E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_51401 chr8 101472159 101472350 + 10.41822 NA Intergenic Intergenic 77263 NR_039681 100616451 NR_039681 miRBase:MI0016822 MIR4471 - microRNA 4471 ncRNA 13-PTNLD9-TUMOR_peak_32740 chr22 19794083 19794280 + 10.41822 NA intron (NM_053004, intron 6 of 7) intron (NM_053004, intron 6 of 7) 48190 NM_024627 79680 Hs.105642 NM_024627 HPRD:13382 C22orf29 BOP chromosome 22 open reading frame 29 protein-coding 13-PTNLD9-TUMOR_peak_49631 chr7 150671777 150671979 + 10.41822 NA exon (NM_172056, exon 2 of 9) exon (NM_172056, exon 2 of 9) 3524 NM_172056 3757 Hs.647099 NM_000238 HPRD:01069 KCNH2 ERG1|HERG|HERG1|Kv11.1|LQT2|SQT1 potassium voltage-gated channel, subfamily H (eag-related), member 2 protein-coding 13-PTNLD9-TUMOR_peak_43320 chr5 179720518 179720755 + 10.41791 NA Intergenic Intergenic -1565 NM_139068 5601 Hs.484371 NM_002752 HPRD:04206 MAPK9 JNK-55|JNK2|JNK2A|JNK2ALPHA|JNK2B|JNK2BETA|PRKM9|SAPK|SAPK1a|p54a|p54aSAPK mitogen-activated protein kinase 9 protein-coding 13-PTNLD9-TUMOR_peak_20567 chr17 17739619 17739745 + 10.41791 NA intron (NM_001005291, intron 1 of 19) CpG 643 NM_001005291 6720 Hs.592123 NM_004176 HPRD:01701 SREBF1 SREBP-1c|SREBP1|bHLHd1 sterol regulatory element binding transcription factor 1 protein-coding 13-PTNLD9-TUMOR_peak_53359 chr9 45439780 45439965 + 10.39748 NA Intergenic TAR1|Satellite|telo -434582 NR_121606 102723709 Hs.743015 NR_121606 LOC102723709 - uncharacterized LOC102723709 ncRNA 13-PTNLD9-TUMOR_peak_15203 chr14 19479167 19479295 + 10.39748 NA Intergenic MLT1M|LTR|ERVL-MaLR -69120 NR_046104 642426 Hs.578301 NR_046104 ENSG00000257504 LOC642426 - uncharacterized LOC642426 ncRNA 13-PTNLD9-TUMOR_peak_49469 chr7 142705134 142705259 + 10.39748 NA Intergenic Intergenic 19023 NM_001001658 135924 Hs.553594 NM_001001658 HPRD:15088 OR9A2 - olfactory receptor, family 9, subfamily A, member 2 protein-coding 13-PTNLD9-TUMOR_peak_6010 chr1 236687799 236688010 + 10.39748 NA promoter-TSS (NR_034040) promoter-TSS (NR_034040) -96 NR_034040 100287902 Hs.677376 NR_034040 ENSG00000223776 LGALS8-AS1 - LGALS8 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_10310 chr11 66445880 66446059 + 10.39748 NA promoter-TSS (NM_001286135) promoter-TSS (NM_001286135) -577 NM_001286135 83759 Hs.618713 NM_031492 HPRD:15230 RBM4B RBM30|RBM4L|ZCCHC15|ZCCHC21B|ZCRB3B RNA binding motif protein 4B protein-coding 13-PTNLD9-TUMOR_peak_7305 chr10 49199871 49200126 + 10.39484 NA Intergenic Intergenic 7827 NM_001137548 644054 Hs.99249 NM_001137548 ENSG00000188279 FAM25C bA164N7.4 family with sequence similarity 25, member C protein-coding 13-PTNLD9-TUMOR_peak_6056 chr1 240656267 240656686 + 10.39256 NA exon (NM_022469, exon 2 of 2) exon (NM_022469, exon 2 of 2) 118986 NM_022469 64388 Hs.98206 NM_022469 HPRD:16390 GREM2 CKTSF1B2|DAND3|PRDC gremlin 2, DAN family BMP antagonist protein-coding 13-PTNLD9-TUMOR_peak_51053 chr8 66557339 66557481 + 10.39256 NA intron (NM_014637, intron 1 of 7) CpG 522 NM_014637 9650 Hs.584788 NM_014637 HPRD:12389 MTFR1 CHPPR|FAM54A2 mitochondrial fission regulator 1 protein-coding 13-PTNLD9-TUMOR_peak_51211 chr8 82754975 82755098 + 10.39256 NA promoter-TSS (NM_152837) promoter-TSS (NM_152837) -515 NM_022133 64089 Hs.492121 NM_022133 HPRD:15411 SNX16 - sorting nexin 16 protein-coding 13-PTNLD9-TUMOR_peak_33313 chr22 40894495 40894836 + 10.39256 NA intron (NM_001282661, intron 3 of 13) L2a|LINE|L2 -23139 NR_109965 101927257 Hs.662725 NR_109965 ENSG00000232564 LOC101927257 - uncharacterized LOC101927257 ncRNA 13-PTNLD9-TUMOR_peak_32216 chr21 36167883 36168074 + 10.38794 NA intron (NM_001754, intron 8 of 8) intron (NM_001754, intron 8 of 8) 49856 NR_038885 100506385 Hs.120179 NR_038885 ENSG00000234380 LINC01426 - long intergenic non-protein coding RNA 1426 ncRNA 13-PTNLD9-TUMOR_peak_24513 chr19 21777298 21777497 + 10.38794 NA Intergenic BSR/Beta|Satellite|Satellite 88960 NM_001001415 353088 Hs.572567 NM_001001415 HPRD:18342 ZNF429 - zinc finger protein 429 protein-coding 13-PTNLD9-TUMOR_peak_3046 chr1 118364450 118364630 + 10.38794 NA Intergenic LTR18A|LTR|ERVL 107762 NM_017686 54834 Hs.310809 NM_017686 HPRD:06576 GDAP2 MACROD3 ganglioside induced differentiation associated protein 2 protein-coding 13-PTNLD9-TUMOR_peak_47132 chr7 28610022 28610150 + 10.38794 NA exon (NM_004904, exon 5 of 11) exon (NM_004904, exon 5 of 11) -115635 NM_001011666 9586 Hs.437075 NM_004904 HPRD:09896 CREB5 CRE-BPA cAMP responsive element binding protein 5 protein-coding 13-PTNLD9-TUMOR_peak_35685 chr3 125351994 125352145 + 10.38794 NA Intergenic LTR8A|LTR|ERV1 -37688 NM_022776 114885 Hs.477440 NM_022776 HPRD:09481 OSBPL11 ORP-11|ORP11|OSBP12|TCCCIA00292 oxysterol binding protein-like 11 protein-coding 13-PTNLD9-TUMOR_peak_25435 chr19 50670590 50670945 + 10.38794 NA Intergenic Intergenic -4229 NM_152358 126123 Hs.414175 NM_152358 HPRD:14578 IZUMO2 C19orf41|PLAL6978|PRO21961|SCRL IZUMO family member 2 protein-coding 13-PTNLD9-TUMOR_peak_47467 chr7 49657722 49658007 + 10.38794 NA Intergenic MLT1F2|LTR|ERVL-MaLR -155393 NM_198570 375567 Hs.629302 NM_198570 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_33973 chr3 16412478 16412849 + 10.38679 NA intron (NM_015150, intron 5 of 9) intron (NM_015150, intron 5 of 9) 105996 NM_138381 92106 Hs.655449 NM_138381 HPRD:14446 OXNAD1 - oxidoreductase NAD-binding domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_20096 chr16 88848876 88849039 + 10.38679 NA intron (NM_001142864, intron 1 of 50) intron (NM_001142864, intron 1 of 50) 2415 NM_001142864 9780 Hs.377001 NM_001142864 HPRD:10945 PIEZO1 DHS|FAM38A|Mib piezo-type mechanosensitive ion channel component 1 protein-coding 13-PTNLD9-TUMOR_peak_5051 chr1 202928379 202928581 + 10.38639 NA promoter-TSS (NM_001290629) promoter-TSS (NM_001290629) -780 NM_001290629 51094 Hs.5298 NM_015999 HPRD:06402 ADIPOR1 ACDCR1|CGI45|PAQR1|TESBP1A adiponectin receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_5135 chr1 204289607 204289808 + 10.38639 NA intron (NM_014935, intron 1 of 22) intron (NM_014935, intron 1 of 22) 39350 NM_014935 22874 Hs.253146 NM_014935 HPRD:09685 PLEKHA6 PEPP-3|PEPP3 pleckstrin homology domain containing, family A member 6 protein-coding 13-PTNLD9-TUMOR_peak_45675 chr6 88410472 88410647 + 10.38639 NA intron (NM_018064, intron 1 of 4) intron (NM_018064, intron 1 of 4) 1426 NM_018064 55122 Hs.485915 NM_018064 HPRD:12864 AKIRIN2 C6orf166|FBI1|dJ486L4.2 akirin 2 protein-coding 13-PTNLD9-TUMOR_peak_44514 chr6 31097056 31097302 + 10.38488 NA intron (NM_014068, intron 2 of 5) intron (NM_014068, intron 2 of 5) -8927 NM_001264 1041 Hs.310958 NM_001264 HPRD:03998 CDSN D6S586E|HTSS|HTSS1|HYPT2|PSS|S corneodesmosin protein-coding 13-PTNLD9-TUMOR_peak_53609 chr9 74296769 74297106 + 10.38336 NA Intergenic Intergenic 86863 NM_013390 23670 Hs.494146 NM_013390 HPRD:09317 TMEM2 - transmembrane protein 2 protein-coding 13-PTNLD9-TUMOR_peak_52295 chr8 140971361 140971545 + 10.38336 NA intron (NM_031466, intron 19 of 22) CpG -256154 NM_001282534 51305 Hs.493037 NM_001282534 HPRD:16167 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium channel, subfamily K, member 9 protein-coding 13-PTNLD9-TUMOR_peak_54440 chr9 114246312 114246796 + 10.38336 NA intron (NM_001080398, intron 2 of 50) CpG-26894 471 NM_001080398 23392 Hs.368255 NM_001080398 ENSG00000136813 KIAA0368 ECM29 KIAA0368 protein-coding 13-PTNLD9-TUMOR_peak_32219 chr21 36260384 36260566 + 10.38241 NA 5' UTR (NM_001001890, exon 1 of 6) 5' UTR (NM_001001890, exon 1 of 6) 512 NM_001122607 861 Hs.149261 NM_001754 HPRD:01043 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBFA2|EVI-1|PEBP2aB runt-related transcription factor 1 protein-coding 13-PTNLD9-TUMOR_peak_47259 chr7 37960724 37960894 + 10.38127 NA promoter-TSS (NM_001242948) promoter-TSS (NM_001242948) -112 NM_001242948 54749 Hs.563491 NM_017549 HPRD:16865 EPDR1 EPDR|MERP-1|MERP1|UCC1 ependymin related 1 protein-coding 13-PTNLD9-TUMOR_peak_15303 chr14 23263824 23264052 + 10.38127 NA intron (NM_001126105, intron 3 of 10) intron (NM_001126105, intron 3 of 10) 21163 NR_040448 9056 Hs.513147 NM_003982 HPRD:04667 SLC7A7 LAT3|LPI|MOP-2|Y+LAT1|y+LAT-1 solute carrier family 7 (amino acid transporter light chain, y+L system), member 7 protein-coding 13-PTNLD9-TUMOR_peak_38616 chr4 77069036 77069147 + 10.38127 NA intron (NR_103782, intron 1 of 11) CpG 577 NR_103780 53371 Hs.430435 NM_017426 HPRD:06352 NUP54 - nucleoporin 54kDa protein-coding 13-PTNLD9-TUMOR_peak_28580 chr2 137409055 137409203 + 10.38127 NA Intergenic L2|LINE|L2 -339333 NM_001080427 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin, type I, domain containing 7B protein-coding 13-PTNLD9-TUMOR_peak_12159 chr12 12550997 12551531 + 10.38127 NA intron (NM_001300742, intron 2 of 3) intron (NM_001300742, intron 2 of 3) 41251 NM_058169 118426 Hs.720779 NM_058169 HPRD:17439 LOH12CR1 LOH1CR12 loss of heterozygosity, 12, chromosomal region 1 protein-coding 13-PTNLD9-TUMOR_peak_12913 chr12 54239314 54239577 + 10.38127 NA Intergenic Intergenic -88627 NR_104332 102216268 Hs.742074 NR_104332 CISTR CISTR-ACT|CISTRACT|re52431 chondrogenesis-associated transcript ncRNA 13-PTNLD9-TUMOR_peak_30182 chr2 241309538 241309788 + 10.38127 NA Intergenic Intergenic -65452 NM_002081 2817 Hs.328232 NM_002081 HPRD:02671 GPC1 glypican glypican 1 protein-coding 13-PTNLD9-TUMOR_peak_10400 chr11 67917689 67917844 + 10.38127 NA Intergenic Intergenic -28908 NM_001277 1119 Hs.77221 NM_001277 HPRD:00327 CHKA CHK|CK|CKI|EK choline kinase alpha protein-coding 13-PTNLD9-TUMOR_peak_50347 chr8 23347597 23347766 + 10.37540 NA Intergenic MIR|SINE|MIR -32437 NM_001128930 9583 Hs.444389 NM_004901 HPRD:09618 ENTPD4 LALP70|LAP70|LYSAL1|NTPDase-4|UDPase ectonucleoside triphosphate diphosphohydrolase 4 protein-coding 13-PTNLD9-TUMOR_peak_4421 chr1 172875896 172876151 + 10.37540 NA Intergenic Intergenic 144080 NM_005092 8995 Hs.248197 NM_005092 TNFSF18 AITRL|GITRL|TL6|hGITRL tumor necrosis factor (ligand) superfamily, member 18 protein-coding 13-PTNLD9-TUMOR_peak_19641 chr16 68778789 68778941 + 10.37540 NA intron (NM_004360, intron 2 of 15) intron (NM_004360, intron 2 of 15) 7670 NM_004360 999 Hs.461086 NM_004360 HPRD:01885 CDH1 Arc-1|CD324|CDHE|ECAD|LCAM|UVO cadherin 1, type 1, E-cadherin (epithelial) protein-coding 13-PTNLD9-TUMOR_peak_27787 chr2 99096482 99096983 + 10.37540 NA intron (NM_001134225, intron 1 of 24) intron (NM_001134225, intron 1 of 24) 35411 NM_001134224 3631 Hs.469386 NM_001566 HPRD:02949 INPP4A INPP4|TVAS1 inositol polyphosphate-4-phosphatase, type I, 107kDa protein-coding 13-PTNLD9-TUMOR_peak_29514 chr2 201502763 201502905 + 10.37540 NA intron (NM_001159, intron 22 of 34) intron (NM_001159, intron 22 of 34) 52103 NM_001159 316 Hs.406238 NM_001159 HPRD:07537 AOX1 AO|AOH1 aldehyde oxidase 1 protein-coding 13-PTNLD9-TUMOR_peak_39478 chr4 141917922 141918214 + 10.37540 NA intron (NM_020724, intron 1 of 6) intron (NM_020724, intron 1 of 6) 136548 NM_020724 57484 Hs.659104 NM_020724 HPRD:15258 RNF150 - ring finger protein 150 protein-coding 13-PTNLD9-TUMOR_peak_27143 chr2 67853805 67854129 + 10.37540 NA Intergenic Intergenic 198727 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LOC101927701 - uncharacterized LOC101927701 ncRNA 13-PTNLD9-TUMOR_peak_12363 chr12 27037940 27038109 + 10.37540 NA Intergenic LTR41B|LTR|ERVL -51893 NM_002223 3709 Hs.512235 NM_002223 HPRD:02536 ITPR2 CFAP48|IP3R2 inositol 1,4,5-trisphosphate receptor, type 2 protein-coding 13-PTNLD9-TUMOR_peak_37249 chr3 192204954 192205089 + 10.37540 NA intron (NM_004113, intron 2 of 5) intron (NM_004113, intron 2 of 5) -78183 NM_021032 2257 Hs.390250 NM_004113 HPRD:03303 FGF12 FGF12B|FHF1 fibroblast growth factor 12 protein-coding 13-PTNLD9-TUMOR_peak_19399 chr16 56390444 56390550 + 10.37540 NA 3' UTR (NM_020988, exon 9 of 9) 3' UTR (NM_020988, exon 9 of 9) 68953 NM_001144 267 Hs.295137 NM_001144 HPRD:09130 AMFR GP78|RNF45 autocrine motility factor receptor, E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_17616 chr15 72978439 72978656 + 10.37540 NA promoter-TSS (NM_001252678) promoter-TSS (NM_001252678) 27 NR_045566 585 Hs.208681 NM_033028 HPRD:08982 BBS4 - Bardet-Biedl syndrome 4 protein-coding 13-PTNLD9-TUMOR_peak_29192 chr2 178097008 178097217 + 10.37540 NA intron (NM_001145413, intron 4 of 4) intron (NM_001145413, intron 4 of 4) 19658 NR_039646 100616394 NR_039646 miRBase:MI0016787 MIR4444-1 MIR4444|hsa-mir-4444-1 microRNA 4444-1 ncRNA 13-PTNLD9-TUMOR_peak_2879 chr1 113066967 113067190 + 10.37540 NA 3' UTR (NM_017744, exon 15 of 15) 3' UTR (NM_017744, exon 15 of 15) 15708 NM_024494 7482 Hs.258575 NM_004185 WNT2B WNT13 wingless-type MMTV integration site family, member 2B protein-coding 13-PTNLD9-TUMOR_peak_41855 chr5 121304979 121305226 + 10.37540 NA intron (NM_152546, intron 1 of 7) MamRep605|Unknown|Unknown 7446 NM_152546 153443 Hs.107622 NM_152546 HPRD:08685 SRFBP1 BUD22|P49|Rlb1|STRAP|p49/STRAP serum response factor binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_33598 chr3 5020879 5021010 + 10.36902 NA promoter-TSS (NM_003670) promoter-TSS (NM_003670) -153 NM_003670 8553 Hs.744856 NM_003670 HPRD:16050 BHLHE40 BHLHB2|DEC1|HLHB2|SHARP-2|STRA13|Stra14 basic helix-loop-helix family, member e40 protein-coding 13-PTNLD9-TUMOR_peak_5704 chr1 228350705 228350991 + 10.36860 NA TTS (NR_103539) TTS (NR_103539) 1701 NR_103539 574432 Hs.568467 NR_103539 ENSG00000203684 IBA57-AS1 C1orf148 IBA57 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_28257 chr2 121011269 121011422 + 10.35944 NA intron (NM_002881, intron 1 of 4) intron (NM_002881, intron 1 of 4) 931 NM_002881 5899 Hs.469820 NM_002881 HPRD:01550 RALB - v-ral simian leukemia viral oncogene homolog B protein-coding 13-PTNLD9-TUMOR_peak_3346 chr1 146081564 146081734 + 10.35700 NA intron (NR_110864, intron 1 of 22).2 intron (NR_110864, intron 1 of 22).2 984 NR_046188 200030 Hs.721588 NM_183372 HPRD:14123 NBPF11 NBPF24 neuroblastoma breakpoint family, member 11 protein-coding 13-PTNLD9-TUMOR_peak_1428 chr1 43424152 43424397 + 10.35635 NA promoter-TSS (NR_033967) promoter-TSS (NR_033967) -446 NR_033967 440584 Hs.260928 NR_033967 ENSG00000227533 SLC2A1-AS1 - SLC2A1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_18204 chr16 1820503 1820704 + 10.35635 NA TTS (NM_001040439) TTS (NM_001040439) 1107 NM_002513 4832 Hs.514065 NM_002513 HPRD:03488 NME3 DR-nm23|NDPK-C|NDPKC|NM23-H3|NM23H3|c371H6.2 NME/NM23 nucleoside diphosphate kinase 3 protein-coding 13-PTNLD9-TUMOR_peak_43963 chr6 16769498 16769671 + 10.35582 NA Intergenic Intergenic -7863 NM_000332 6310 Hs.434961 NM_000332 HPRD:03333 ATXN1 ATX1|D6S504E|SCA1 ataxin 1 protein-coding 13-PTNLD9-TUMOR_peak_52667 chr9 4490089 4490575 + 10.35582 NA promoter-TSS (NM_004170) promoter-TSS (NM_004170) -95 NM_004170 6505 Hs.444915 NM_004170 HPRD:00597 SLC1A1 EAAC1|EAAT3|SCZD18 solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1 protein-coding 13-PTNLD9-TUMOR_peak_37635 chr4 2807540 2807756 + 10.35582 NA intron (NM_001122681, intron 1 of 12) intron (NM_001122681, intron 1 of 12) -6298 NM_001145855 6452 Hs.167679 NM_003023 HPRD:03657 SH3BP2 3BP-2|3BP2|CRBM|CRPM SH3-domain binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_13350 chr12 72451122 72451404 + 10.35582 NA Intergenic Tigger13a|DNA|TcMar-Tigger 118637 NM_173353 121278 Hs.736576 NM_173353 HPRD:09594 TPH2 ADHD7|NTPH tryptophan hydroxylase 2 protein-coding 13-PTNLD9-TUMOR_peak_37655 chr4 3371770 3371959 + 10.35582 NA 5' UTR (NM_198227, exon 1 of 16) 5' UTR (NM_198227, exon 1 of 16) 140 NM_198227 6002 Hs.527061 NM_002926 HPRD:03943 RGS12 - regulator of G-protein signaling 12 protein-coding 13-PTNLD9-TUMOR_peak_32730 chr22 19419368 19419566 + 10.35502 NA promoter-TSS (NM_003325) promoter-TSS (NM_003325) -248 NM_003325 7290 Hs.474206 NM_003325 HPRD:02583 HIRA DGCR1|TUP1|TUPLE1 histone cell cycle regulator protein-coding 13-PTNLD9-TUMOR_peak_12679 chr12 48220248 48220437 + 10.35502 NA Intergenic Intergenic -6579 NM_015401 51564 Hs.200063 NM_015401 HPRD:09133 HDAC7 HD7A|HDAC7A histone deacetylase 7 protein-coding 13-PTNLD9-TUMOR_peak_32606 chr21 47473134 47473508 + 10.35502 NA Intergenic L1ME2|LINE|L1 -44712 NM_001849 1292 Hs.420269 NM_001849 HPRD:02110 COL6A2 PP3610 collagen, type VI, alpha 2 protein-coding 13-PTNLD9-TUMOR_peak_2463 chr1 92292732 92292850 + 10.34919 NA intron (NR_036634, intron 2 of 17) intron (NR_036634, intron 2 of 17) 59045 NM_003243 7049 Hs.482390 NM_003243 HPRD:02846 TGFBR3 BGCAN|betaglycan transforming growth factor, beta receptor III protein-coding 13-PTNLD9-TUMOR_peak_5943 chr1 235116820 235116948 + 10.34919 NA Intergenic Intergenic 174368 NR_002956 677802 Hs.744743 NR_002956 SNORA14B ACA14b small nucleolar RNA, H/ACA box 14B snoRNA 13-PTNLD9-TUMOR_peak_51562 chr8 107670652 107670782 + 10.34919 NA intron (NM_181354, intron 1 of 13) intron (NM_181354, intron 1 of 13) 681 NM_181354 55074 Hs.127286 NM_018002 HPRD:16126 OXR1 TLDC3 oxidation resistance 1 protein-coding 13-PTNLD9-TUMOR_peak_8531 chr10 125754254 125754463 + 10.34919 NA Intergenic Intergenic 97582 NM_015892 51363 Hs.287537 NM_014863 HPRD:12203 CHST15 BRAG|GALNAC4S-6ST carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15 protein-coding 13-PTNLD9-TUMOR_peak_18592 chr16 14918462 14918637 + 10.34919 NA promoter-TSS (NR_023387) promoter-TSS (NR_023387) 10 NR_023387 730013 Hs.460057 NR_023387 ENSG00000255277 ABCC6P2 - ATP-binding cassette, sub-family C, member 6 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_37256 chr3 192569725 192569927 + 10.34315 NA intron (NM_178496, intron 1 of 1) intron (NM_178496, intron 1 of 1) 66124 NM_178496 151963 Hs.151443 NM_178496 HPRD:14092 MB21D2 C3orf59 Mab-21 domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_29636 chr2 206579061 206579207 + 10.34315 NA intron (NM_003872, intron 2 of 16) intron (NM_003872, intron 2 of 16) 31910 NM_201264 8828 Hs.471200 NM_003872 HPRD:03643 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 13-PTNLD9-TUMOR_peak_13069 chr12 58758709 58758875 + 10.34315 NA Intergenic Intergenic 416706 NR_120452 101927653 Hs.130744 NR_120452 LOC101927653 - uncharacterized LOC101927653 ncRNA 13-PTNLD9-TUMOR_peak_31489 chr20 49988946 49989053 + 10.34315 NA Intergenic Intergenic 80515 NR_036162 100422889 NR_036162 MIR3194 - microRNA 3194 ncRNA 13-PTNLD9-TUMOR_peak_47822 chr7 71098493 71098834 + 10.34315 NA intron (NM_022479, intron 6 of 10) intron (NM_022479, intron 6 of 10) -325907 NR_037477 100500836 NR_037477 miRBase:MI0016419 MIR3914-1 - microRNA 3914-1 ncRNA 13-PTNLD9-TUMOR_peak_865 chr1 28726447 28726579 + 10.34315 NA intron (NM_001048183, intron 1 of 13) L2a|LINE|L2 30420 NM_001048183 65979 Hs.225641 NM_023923 HPRD:07816 PHACTR4 PPP1R124 phosphatase and actin regulator 4 protein-coding 13-PTNLD9-TUMOR_peak_4924 chr1 201083380 201083769 + 10.34315 NA 3' UTR (NM_001270601, exon 1 of 1) 3' UTR (NM_001270601, exon 1 of 1) 926 NM_001270601 647219 Hs.143949 NM_001270601 ASCL5 bHLHa47 achaete-scute family bHLH transcription factor 5 protein-coding 13-PTNLD9-TUMOR_peak_18330 chr16 3550831 3551287 + 10.34315 NA 5' UTR (NM_015041, exon 1 of 12) 5' UTR (NM_015041, exon 1 of 12) 114 NM_015041 23059 Hs.155995 NM_015041 HPRD:10013 CLUAP1 CFAP22|FAP22 clusterin associated protein 1 protein-coding 13-PTNLD9-TUMOR_peak_34009 chr3 18372191 18372305 + 10.34035 NA Intergenic L1PA3|LINE|L1 94581 NM_002971 6304 Hs.517717 NM_002971 HPRD:03647 SATB1 - SATB homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_24366 chr19 18055267 18055398 + 10.34035 NA TTS (NM_138442) TTS (NM_138442) -6779 NM_002248 3780 Hs.158173 NM_002248 KCNN1 KCa2.1|SK1|SKCA1|hSK1 potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1 protein-coding 13-PTNLD9-TUMOR_peak_42430 chr5 142092811 142093178 + 10.34035 NA Intergenic Intergenic -15359 NM_001144935 2246 Hs.483635 NM_000800 HPRD:00567 FGF1 AFGF|ECGF|ECGF-beta|ECGFA|ECGFB|FGF-1|FGF-alpha|FGFA|GLIO703|HBGF-1|HBGF1 fibroblast growth factor 1 (acidic) protein-coding 13-PTNLD9-TUMOR_peak_15659 chr14 47911563 47911700 + 10.34035 NA intron (NM_001113498, intron 1 of 16) L2a|LINE|L2 -99182 NR_103766 161357 Hs.436380 NM_182830 HPRD:14352 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 13-PTNLD9-TUMOR_peak_10237 chr11 65374538 65374803 + 10.34035 NA intron (NM_002419, intron 5 of 9) intron (NM_002419, intron 5 of 9) 7050 NM_002419 4296 Hs.502872 NM_002419 HPRD:02502 MAP3K11 MEKK11|MLK-3|MLK3|PTK1|SPRK mitogen-activated protein kinase kinase kinase 11 protein-coding 13-PTNLD9-TUMOR_peak_51068 chr8 67132188 67132374 + 10.34035 NA Intergenic Intergenic 27932 NR_039979 100505659 Hs.529729 NR_039979 ENSG00000253138 LINC00967 - long intergenic non-protein coding RNA 967 ncRNA 13-PTNLD9-TUMOR_peak_21423 chr17 48075716 48075852 + 10.34035 NA Intergenic Intergenic -3196 NM_005220 1747 Hs.134194 NM_005220 HPRD:02752 DLX3 AI4|TDO distal-less homeobox 3 protein-coding 13-PTNLD9-TUMOR_peak_50102 chr8 12249094 12249305 + 10.34035 NA intron (NR_026789, intron 4 of 4) L1PBa|LINE|L1 8675 NR_024044 245912 Hs.721640 NR_024044 DEFB109P1 DEFB-9|DEFB109|DEFB109A defensin, beta 109, pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_18073 chr15 99975416 99975770 + 10.34035 NA Intergenic Intergenic -130540 NM_005587 4205 Hs.268675 NM_005587 HPRD:02807 MEF2A ADCAD1|RSRFC4|RSRFC9|mef2 myocyte enhancer factor 2A protein-coding 13-PTNLD9-TUMOR_peak_36095 chr3 138168276 138168476 + 10.34035 NA intron (NM_031913, intron 1 of 22) MER5A|DNA|hAT-Charlie 14961 NM_031913 83850 Hs.477711 NM_031913 HPRD:13054 ESYT3 CHR3SYT|E-Syt3|FAM62C extended synaptotagmin-like protein 3 protein-coding 13-PTNLD9-TUMOR_peak_3278 chr1 145129779 145130098 + 10.33728 NA intron (NM_001277444, intron 20 of 24) intron (NM_001277444, intron 20 of 24) 33531 NM_004892 9554 Hs.632438 NM_004892 SEC22B ERS-24|SEC22L1 SEC22 vesicle trafficking protein homolog B (S. cerevisiae) (gene/pseudogene) protein-coding 13-PTNLD9-TUMOR_peak_55666 chrX 26338286 26338512 + 10.33315 NA Intergenic L1HS|LINE|L1 104113 NM_001271752 347541 Hs.224079 NM_001271752 ENSG00000188408 MAGEB5 CT3.3|MAGE-B5 melanoma antigen family B, 5 protein-coding 13-PTNLD9-TUMOR_peak_25699 chr19 56003225 56003420 + 10.33315 NA intron (NM_001195267, intron 6 of 12) intron (NM_001195267, intron 6 of 12) 3452 NM_001195267 284297 Hs.554182 NM_182571 HPRD:11444 SSC5D - scavenger receptor cysteine rich family, 5 domains protein-coding 13-PTNLD9-TUMOR_peak_31762 chr20 60936940 60937196 + 10.32490 NA intron (NM_005560, intron 2 of 79) intron (NM_005560, intron 2 of 79) 5300 NM_005560 3911 Hs.473256 NM_005560 HPRD:03020 LAMA5 - laminin, alpha 5 protein-coding 13-PTNLD9-TUMOR_peak_30425 chr20 11286072 11286337 + 10.32470 NA Intergenic Intergenic -32173 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 13-PTNLD9-TUMOR_peak_22712 chr18 18654989 18655125 + 10.32470 NA intron (NM_005406, intron 1 of 32) L2|LINE|L2 36755 NM_005406 6093 Hs.306307 NM_005406 ROCK1 P160ROCK|ROCK-I Rho-associated, coiled-coil containing protein kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_10365 chr11 67365093 67365245 + 10.32470 NA Intergenic SVA_C|Other|Other -9154 NM_007103 4723 Hs.7744 NM_007103 HPRD:01191 NDUFV1 CI-51K|CI51KD|UQOR1 NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa protein-coding 13-PTNLD9-TUMOR_peak_5441 chr1 221099113 221099296 + 10.32470 NA Intergenic Intergenic -45722 NR_046901 100873924 Hs.645593 NR_046901 HLX-AS1 - HLX antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_56289 chrX 102469927 102470061 + 10.32470 NA promoter-TSS (NM_001080425) promoter-TSS (NM_001080425) -26 NM_001080425 56271 Hs.184736 NM_001080425 ENSG00000102409 BEX4 BEXL1 brain expressed, X-linked 4 protein-coding 13-PTNLD9-TUMOR_peak_27829 chr2 101226921 101227200 + 10.32470 NA Intergenic Intergenic 47642 NM_024065 79031 Hs.469459 NM_024065 PDCL3 HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1 phosducin-like 3 protein-coding 13-PTNLD9-TUMOR_peak_26271 chr2 20701059 20701233 + 10.32470 NA Intergenic LTR5A|LTR|ERVK 54311 NM_004040 388 Hs.502876 NM_004040 HPRD:01321 RHOB ARH6|ARHB|MST081|MSTP081|RHOH6 ras homolog family member B protein-coding 13-PTNLD9-TUMOR_peak_13241 chr12 68192590 68192754 + 10.32470 NA Intergenic Intergenic -69417 NR_110063 101927901 Hs.369609 NR_110063 ENSG00000255970 LOC101927901 - uncharacterized LOC101927901 ncRNA 13-PTNLD9-TUMOR_peak_23489 chr18 74601180 74601339 + 10.32470 NA intron (NM_007345, intron 9 of 30) intron (NM_007345, intron 9 of 30) 65143 NM_007345 7776 Hs.719137 NM_007345 HPRD:05301 ZNF236 ZNF236A|ZNF236B zinc finger protein 236 protein-coding 13-PTNLD9-TUMOR_peak_19243 chr16 46687822 46687934 + 10.32470 NA Intergenic SVA_D|Other|Other -32567 NM_024745 79801 Hs.123253 NM_024745 HPRD:11557 SHCBP1 PAL SHC SH2-domain binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_53190 chr9 37650899 37651039 + 10.32470 NA promoter-TSS (NM_014907) promoter-TSS (NM_014907) -83 NM_014907 22844 Hs.163990 NM_014907 HPRD:17018 FRMPD1 FRMD2 FERM and PDZ domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_54439 chr9 114119049 114119220 + 10.32470 NA Intergenic L1MEb|LINE|L1 -28421 NM_205859 26248 Hs.381312 NM_205859 HPRD:17701 OR2K2 HSHTPCRH06|HTPCRH06|OR2AN1P|OR2AR1P olfactory receptor, family 2, subfamily K, member 2 protein-coding 13-PTNLD9-TUMOR_peak_28743 chr2 152882283 152882590 + 10.32470 NA intron (NM_001005746, intron 2 of 13) intron (NM_001005746, intron 2 of 13) -51951 NM_001005747 785 Hs.120725 NM_000726 HPRD:09057 CACNB4 CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6 calcium channel, voltage-dependent, beta 4 subunit protein-coding 13-PTNLD9-TUMOR_peak_46916 chr7 15170435 15170568 + 10.32470 NA Intergenic Intergenic -289426 NM_004080 1607 Hs.567255 NM_004080 HPRD:06819 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase, beta 90kDa protein-coding 13-PTNLD9-TUMOR_peak_52108 chr8 131893152 131893366 + 10.32470 NA intron (NM_001115, intron 8 of 17) intron (NM_001115, intron 8 of 17) 159576 NM_001115 114 Hs.591859 NM_001115 HPRD:00051 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 (brain) protein-coding 13-PTNLD9-TUMOR_peak_50340 chr8 23211539 23211805 + 10.32470 NA intron (NM_002318, intron 3 of 13) intron (NM_002318, intron 3 of 13) 17951 NR_038323 100507156 Hs.661130 NR_038323 ENSG00000253837 LOC100507156 - uncharacterized LOC100507156 ncRNA 13-PTNLD9-TUMOR_peak_19960 chr16 85028482 85028594 + 10.32470 NA intron (NM_001145548, intron 2 of 8) intron (NM_001145548, intron 2 of 8) 16603 NM_017740 55625 Hs.461610 NM_017740 HPRD:15722 ZDHHC7 DHHC7|SERZ-B|SERZ1|ZNF370 zinc finger, DHHC-type containing 7 protein-coding 13-PTNLD9-TUMOR_peak_46336 chr6 152085105 152085399 + 10.32470 NA intron (NM_001122742, intron 2 of 9) MER81|DNA|hAT-Blackjack -41556 NM_001291230 2099 Hs.208124 NM_000125 HPRD:00589 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_30058 chr2 234883277 234883510 + 10.32470 NA intron (NM_024080, intron 17 of 25) intron (NM_024080, intron 17 of 25) 57350 NM_024080 79054 Hs.366053 NM_024080 HPRD:09454 TRPM8 LTRPC6|TRPP8 transient receptor potential cation channel, subfamily M, member 8 protein-coding 13-PTNLD9-TUMOR_peak_2896 chr1 113334863 113335078 + 10.32470 NA Intergenic MER4B|LTR|ERV1 58295 NR_103746 100996702 Hs.632431 NR_103746 ENSG00000215866 LINC01356 - long intergenic non-protein coding RNA 1356 ncRNA 13-PTNLD9-TUMOR_peak_26808 chr2 46533515 46533747 + 10.32470 NA intron (NM_001430, intron 1 of 15) intron (NM_001430, intron 1 of 15) 9090 NM_001430 2034 Hs.468410 NM_001430 HPRD:06787 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 13-PTNLD9-TUMOR_peak_34697 chr3 53961592 53961806 + 10.32470 NA Intergenic L1PA2|LINE|L1 -35710 NM_021237 58515 Hs.58471 NM_021237 HPRD:07448 SELK HSPC297|SelK selenoprotein K protein-coding 13-PTNLD9-TUMOR_peak_41595 chr5 97803982 97804106 + 10.32470 NA Intergenic L1PA17|LINE|L1 -300955 NM_001012761 285704 Hs.526902 NM_173670 HPRD:15243 RGMB DRAGON repulsive guidance molecule family member b protein-coding 13-PTNLD9-TUMOR_peak_23832 chr19 8219789 8220034 + 10.32470 NA Intergenic Intergenic -7526 NM_032447 84467 Hs.370362 NM_032447 HPRD:10538 FBN3 - fibrillin 3 protein-coding 13-PTNLD9-TUMOR_peak_49210 chr7 134854456 134854633 + 10.31991 NA promoter-TSS (NM_001243753) promoter-TSS (NM_001243753) -318 NM_001243755 78996 Hs.732134 NM_024033 HPRD:08333 C7orf49 MRI chromosome 7 open reading frame 49 protein-coding 13-PTNLD9-TUMOR_peak_38559 chr4 71859056 71859514 + 10.31892 NA promoter-TSS (NM_000788) promoter-TSS (NM_000788) 20 NM_000788 1633 Hs.709 NM_000788 HPRD:00507 DCK - deoxycytidine kinase protein-coding 13-PTNLD9-TUMOR_peak_24955 chr19 39971722 39971892 + 10.31892 NA intron (NM_001001563, intron 1 of 10) intron (NM_001001563, intron 1 of 10) 755 NM_001001563 92609 Hs.590956 NM_001001563 HPRD:12118 TIMM50 TIM50|TIM50L translocase of inner mitochondrial membrane 50 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_3685 chr1 152477559 152477875 + 10.31892 NA Intergenic Intergenic -5603 NM_178438 254910 Hs.516410 NM_178438 HPRD:17265 LCE5A LEP18|SPRL5A late cornified envelope 5A protein-coding 13-PTNLD9-TUMOR_peak_31819 chr20 62338224 62338364 + 10.31892 NA promoter-TSS (NM_001083113) promoter-TSS (NM_001083113) -500 NM_001083113 84619 Hs.590868 NM_032527 HPRD:15736 ZGPAT GPATC6|GPATCH6|KIAA1847|ZC3H9|ZC3HDC9|ZIP zinc finger, CCCH-type with G patch domain protein-coding 13-PTNLD9-TUMOR_peak_36076 chr3 137787532 137787650 + 10.31892 NA TTS (NM_001170538) TTS (NM_001170538) 44731 NM_001170538 199221 Hs.351403 NM_173543 HPRD:08145 DZIP1L DZIP2 DAZ interacting zinc finger protein 1-like protein-coding 13-PTNLD9-TUMOR_peak_6550 chr10 15001827 15002140 + 10.31892 NA intron (NM_001080836, intron 1 of 2) intron (NM_001080836, intron 1 of 2) 545 NM_001080836 644890 Hs.257249 NM_001080836 ENSG00000197889 MEIG1 SPATA39|bA2K17.3 meiosis/spermiogenesis associated 1 protein-coding 13-PTNLD9-TUMOR_peak_42914 chr5 167752368 167752528 + 10.31537 NA intron (NM_015238, intron 1 of 22) intron (NM_015238, intron 1 of 22) 33383 NM_001161662 23286 Hs.484047 NM_015238 HPRD:10033 WWC1 HBEBP3|HBEBP36|KIBRA|MEMRYQTL|PPP1R168 WW and C2 domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_21463 chr17 48506178 48506398 + 10.31537 NA intron (NM_001288968, intron 2 of 16) L2c|LINE|L2 2769 NM_001288969 80221 Hs.288959 NM_025149 HPRD:13380 ACSF2 ACSMW|AVYV493 acyl-CoA synthetase family member 2 protein-coding 13-PTNLD9-TUMOR_peak_43642 chr6 6695263 6695408 + 10.31537 NA Intergenic LTR1|LTR|ERV1 -72276 NR_026970 285780 Hs.655737 NM_173675 HPRD:08165 LY86-AS1 LY86-AS|LY86AS LY86 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_35563 chr3 122399516 122399707 + 10.31537 NA promoter-TSS (NM_017554) promoter-TSS (NM_017554) -61 NM_017554 54625 Hs.518203 NM_017554 HPRD:11421 PARP14 ARTD8|BAL2|PARP-14|pART8 poly (ADP-ribose) polymerase family, member 14 protein-coding 13-PTNLD9-TUMOR_peak_30015 chr2 232526804 232527228 + 10.31537 NA Intergenic CpG -46219 NM_002823 5757 Hs.459927 NM_002823 HPRD:01778 PTMA TMSA prothymosin, alpha protein-coding 13-PTNLD9-TUMOR_peak_24681 chr19 33549173 33549435 + 10.31012 NA intron (NM_033103, intron 1 of 14) intron (NM_033103, intron 1 of 14) 6520 NM_033103 85415 Hs.466435 NM_033103 HPRD:10192 RHPN2 P76RBE|RHOBP rhophilin, Rho GTPase binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_26839 chr2 47195155 47195392 + 10.31012 NA intron (NM_001288955, intron 3 of 18) intron (NM_001288955, intron 3 of 18) -26279 NM_001171511 90411 Hs.662152 NM_139279 HPRD:09693 MCFD2 F5F8D|F5F8D2|LMAN1IP|SDNSF multiple coagulation factor deficiency 2 protein-coding 13-PTNLD9-TUMOR_peak_12721 chr12 49663107 49663241 + 10.31012 NA intron (NM_032704, intron 1 of 3) intron (NM_032704, intron 1 of 3) 4309 NM_032704 84790 Hs.652390 NM_032704 HPRD:06747 TUBA1C TUBA6|bcm948 tubulin, alpha 1c protein-coding 13-PTNLD9-TUMOR_peak_48996 chr7 128503642 128503783 + 10.30531 NA intron (NM_004231, intron 1 of 1) intron (NM_004231, intron 1 of 1) 855 NM_004231 9296 Hs.78089 NM_004231 HPRD:06198 ATP6V1F ATP6S14|VATF|Vma7 ATPase, H+ transporting, lysosomal 14kDa, V1 subunit F protein-coding 13-PTNLD9-TUMOR_peak_36127 chr3 139108857 139109174 + 10.30531 NA promoter-TSS (NM_004766) promoter-TSS (NM_004766) 370 NR_121609 100507291 Hs.97661 NR_121608 LOC100507291 - uncharacterized LOC100507291 ncRNA 13-PTNLD9-TUMOR_peak_3967 chr1 156698197 156698323 + 10.30531 NA promoter-TSS (NM_015997) promoter-TSS (NM_015997) -3 NM_015997 51093 Hs.512597 NM_015997 HPRD:10824 RRNAD1 C1orf66|CGI-41 ribosomal RNA adenine dimethylase domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_26260 chr2 20267787 20268062 + 10.29959 NA Intergenic Intergenic -16135 NM_014713 9741 Hs.467807 NM_014713 HPRD:13959 LAPTM4A HUMORF13|LAPTM4|MBNT|Mtrp lysosomal protein transmembrane 4 alpha protein-coding 13-PTNLD9-TUMOR_peak_322 chr1 9310643 9310782 + 10.29959 NA intron (NM_001282587, intron 3 of 4) intron (NM_001282587, intron 3 of 4) 10809 NM_001282587 9563 Hs.463511 NM_004285 HPRD:00681 H6PD CORTRD1|G6PDH|GDH hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase) protein-coding 13-PTNLD9-TUMOR_peak_46024 chr6 126133533 126133796 + 10.29959 NA intron (NM_001199620, intron 3 of 17) intron (NM_001199620, intron 3 of 17) 21755 NM_001199621 135112 Hs.171426 NM_181782 HPRD:14814 NCOA7 ERAP140|ESNA1|NCOA7-AS|Nbla00052|Nbla10993|TLDC4|dJ187J11.3 nuclear receptor coactivator 7 protein-coding 13-PTNLD9-TUMOR_peak_6415 chr10 7344396 7344721 + 10.29959 NA intron (NM_001018039, intron 4 of 20) intron (NM_001018039, intron 4 of 20) 106745 NM_001018039 57713 Hs.407983 NM_001018039 ENSG00000198879 SFMBT2 - Scm-like with four mbt domains 2 protein-coding 13-PTNLD9-TUMOR_peak_12830 chr12 52702353 52702507 + 10.29959 NA 3' UTR (NM_002284, exon 9 of 9) 3' UTR (NM_002284, exon 9 of 9) 6781 NM_002284 3892 Hs.278658 NM_002284 HPRD:03567 KRT86 HB6|Hb1|KRTHB1|KRTHB6|MNX|hHb6 keratin 86 protein-coding 13-PTNLD9-TUMOR_peak_9234 chr11 18334726 18334922 + 10.29959 NA intron (NM_181508, intron 1 of 21) LTR23|LTR|ERV1 8897 NM_181508 11234 Hs.437599 NM_007216 HPRD:07395 HPS5 AIBP63 Hermansky-Pudlak syndrome 5 protein-coding 13-PTNLD9-TUMOR_peak_36819 chr3 177233839 177234331 + 10.29959 NA intron (NR_047568, intron 1 of 3) intron (NR_047568, intron 1 of 3) 74376 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 13-PTNLD9-TUMOR_peak_5850 chr1 232990013 232990254 + 10.29856 NA Intergenic Intergenic 49495 NM_019090 54627 Hs.160373 NM_019090 ENSG00000212916 MAP10 KIAA1383|MTR120 microtubule-associated protein 10 protein-coding 13-PTNLD9-TUMOR_peak_16351 chr14 78266419 78266862 + 10.29856 NA intron (NM_020421, intron 1 of 10) CpG 214 NM_020421 57143 Hs.413208 NM_020421 HPRD:10630 ADCK1 - aarF domain containing kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_16393 chr14 87598391 87598545 + 10.29856 NA Intergenic Intergenic 226346 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LOC283585 - uncharacterized LOC283585 ncRNA 13-PTNLD9-TUMOR_peak_21135 chr17 41662817 41663045 + 10.29856 NA Intergenic Intergenic -39131 NM_001079675 2118 Hs.434059 NM_001986 HPRD:02833 ETV4 E1A-F|E1AF|PEA3|PEAS3 ets variant 4 protein-coding 13-PTNLD9-TUMOR_peak_50364 chr8 23754607 23754862 + 10.29856 NA Intergenic Intergenic -42414 NM_003155 6781 Hs.25590 NM_003155 HPRD:03115 STC1 STC stanniocalcin 1 protein-coding 13-PTNLD9-TUMOR_peak_33054 chr22 29290347 29290467 + 10.29856 NA intron (NM_001206998, intron 1 of 8) intron (NM_001206998, intron 1 of 8) 10652 NM_001206998 84133 Hs.604200 NM_032173 ENSG00000183579 ZNRF3 BK747E2.3|RNF203 zinc and ring finger 3 protein-coding 13-PTNLD9-TUMOR_peak_19242 chr16 46683522 46683649 + 10.29856 NA Intergenic Intergenic -28274 NM_024745 79801 Hs.123253 NM_024745 HPRD:11557 SHCBP1 PAL SHC SH2-domain binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_7759 chr10 75587265 75587393 + 10.29856 NA intron (NM_172171, intron 13 of 20) intron (NM_172171, intron 13 of 20) -15740 NM_003635 8509 Hs.654758 NM_003635 HPRD:04465 NDST2 HSST2|NST2 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2 protein-coding 13-PTNLD9-TUMOR_peak_11843 chr12 3155781 3155936 + 10.29856 NA Intergenic Intergenic -30663 NM_001168320 10867 Hs.504517 NM_006675 HPRD:14823 TSPAN9 NET-5|NET5|PP1057 tetraspanin 9 protein-coding 13-PTNLD9-TUMOR_peak_17295 chr15 52263919 52264119 + 10.29856 NA promoter-TSS (NM_138792) promoter-TSS (NM_138792) -21 NM_138792 123169 Hs.567662 NM_138792 HPRD:11231 LEO1 RDL Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_16687 chr14 105579095 105579274 + 10.29856 NA Intergenic CpG 18700 NR_110546 102723354 Hs.569410 NR_110546 LOC102723354 - uncharacterized LOC102723354 ncRNA 13-PTNLD9-TUMOR_peak_47243 chr7 36432406 36432515 + 10.29856 NA intron (NM_001284301, intron 1 of 22) intron (NM_001284301, intron 1 of 22) -2726 NM_001100425 23366 Hs.6224 NM_015314 HPRD:17197 KIAA0895 - KIAA0895 protein-coding 13-PTNLD9-TUMOR_peak_15581 chr14 37451428 37451626 + 10.29856 NA intron (NM_030631, intron 1 of 9) intron (NM_030631, intron 1 of 9) -29931 NR_039725 100616280 NR_039725 MIR4503 - microRNA 4503 ncRNA 13-PTNLD9-TUMOR_peak_12067 chr12 8148306 8148488 + 10.29856 NA Intergenic L2|LINE|L2 -36962 NM_018416 55810 Hs.120844 NM_018416 HPRD:17014 FOXJ2 FHX forkhead box J2 protein-coding 13-PTNLD9-TUMOR_peak_42429 chr5 142078759 142078904 + 10.29856 NA Intergenic Intergenic -1196 NM_001144935 2246 Hs.483635 NM_000800 HPRD:00567 FGF1 AFGF|ECGF|ECGF-beta|ECGFA|ECGFB|FGF-1|FGF-alpha|FGFA|GLIO703|HBGF-1|HBGF1 fibroblast growth factor 1 (acidic) protein-coding 13-PTNLD9-TUMOR_peak_21072 chr17 40171976 40172158 + 10.28182 NA promoter-TSS (NM_001144928) promoter-TSS (NM_001144928) -20 NM_001144927 28511 Hs.632252 NM_017595 HPRD:07261 NKIRAS2 KBRAS2|kappaB-Ras2 NFKB inhibitor interacting Ras-like 2 protein-coding 13-PTNLD9-TUMOR_peak_54037 chr9 96847650 96847811 + 10.28182 NA intron (NM_152422, intron 2 of 8) intron (NM_152422, intron 2 of 8) 1019 NM_001253829 138639 Hs.437943 NM_152422 HPRD:06689 PTPDC1 PTP9Q22 protein tyrosine phosphatase domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_784 chr1 27021999 27022188 + 10.28182 NA promoter-TSS (NM_139135) promoter-TSS (NM_139135) -429 NM_006015 8289 Hs.468972 NM_006015 HPRD:04319 ARID1A B120|BAF250|BAF250a|BM029|C1orf4|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1 AT rich interactive domain 1A (SWI-like) protein-coding 13-PTNLD9-TUMOR_peak_36994 chr3 184318754 184319022 + 10.28182 NA Intergenic Intergenic 39301 NM_004443 2049 Hs.2913 NM_004443 HPRD:03502 EPHB3 ETK2|HEK2|TYRO6 EPH receptor B3 protein-coding 13-PTNLD9-TUMOR_peak_30629 chr20 24079643 24079811 + 10.28182 NA Intergenic Intergenic -100676 NR_040102 400839 Hs.651965 NR_040102 ENSG00000230133 FLJ33581 - uncharacterized LOC400839 ncRNA 13-PTNLD9-TUMOR_peak_39579 chr4 148503667 148503889 + 10.28182 NA Intergenic Intergenic -34761 NM_018241 55751 Hs.203896 NM_018241 TMEM184C TMEM34 transmembrane protein 184C protein-coding 13-PTNLD9-TUMOR_peak_10831 chr11 86208474 86208740 + 10.28182 NA intron (NM_001014811, intron 5 of 13) intron (NM_001014811, intron 5 of 13) 122829 NM_021827 60494 Hs.144913 NM_021827 HPRD:08032 CCDC81 - coiled-coil domain containing 81 protein-coding 13-PTNLD9-TUMOR_peak_34480 chr3 48128963 48129127 + 10.28149 NA intron (NM_002375, intron 1 of 18) intron (NM_002375, intron 1 of 18) 1724 NM_030885 4134 Hs.517949 NM_002375 HPRD:01141 MAP4 - microtubule-associated protein 4 protein-coding 13-PTNLD9-TUMOR_peak_15042 chr13 103248607 103248782 + 10.28149 NA promoter-TSS (NM_003291) promoter-TSS (NM_003291) -592 NM_003291 7174 Hs.432424 NM_003291 HPRD:01834 TPP2 TPP-2 tripeptidyl peptidase II protein-coding 13-PTNLD9-TUMOR_peak_10194 chr11 64879218 64879386 + 10.28130 NA promoter-TSS (NM_003273) promoter-TSS (NM_003273) -24 NR_102367 7108 Hs.31130 NM_003273 HPRD:04564 TM7SF2 ANG1|DHCR14A|NET47 transmembrane 7 superfamily member 2 protein-coding 13-PTNLD9-TUMOR_peak_32837 chr22 21644759 21644906 + 10.28019 NA intron (NR_024583, intron 4 of 6) intron (NR_024583, intron 4 of 6) 8118 NR_024583 29797 Hs.396963 NM_001029950 POM121L8P DKFZp434K191 POM121 transmembrane nucleoporin-like 8 pseudogene pseudo 13-PTNLD9-TUMOR_peak_3275 chr1 145114169 145114305 + 10.27704 NA intron (NM_004892, intron 4 of 5) L2a|LINE|L2 17830 NM_004892 9554 Hs.632438 NM_004892 SEC22B ERS-24|SEC22L1 SEC22 vesicle trafficking protein homolog B (S. cerevisiae) (gene/pseudogene) protein-coding 13-PTNLD9-TUMOR_peak_20618 chr17 19091690 19091821 + 10.27687 NA Intergenic CpG -29570 NM_001291905 388436 Hs.677375 NM_001291905 LOC388436 - uncharacterized protein ENSP00000382042 protein-coding 13-PTNLD9-TUMOR_peak_54794 chr9 129748120 129748345 + 10.27507 NA intron (NM_014636, intron 4 of 18) intron (NM_014636, intron 4 of 18) 23728 NM_001190728 9649 Hs.432842 NM_014636 HPRD:11479 RALGPS1 RALGEF2|RALGPS1A Ral GEF with PH domain and SH3 binding motif 1 protein-coding 13-PTNLD9-TUMOR_peak_38907 chr4 95331974 95332188 + 10.27507 NA Intergenic Intergenic -40927 NM_001011516 10611 Hs.480311 NM_006457 HPRD:05799 PDLIM5 ENH|ENH1|LIM PDZ and LIM domain 5 protein-coding 13-PTNLD9-TUMOR_peak_44448 chr6 30434126 30434433 + 10.27507 NA Intergenic CpG -22904 NM_005516 3133 Hs.650174 NM_005516 HPRD:00877 HLA-E EA1.2|EA2.1|HLA-6.2|MHC|QA1 major histocompatibility complex, class I, E protein-coding 13-PTNLD9-TUMOR_peak_34997 chr3 73835726 73835935 + 10.27507 NA Intergenic Intergenic -161758 NM_015009 23024 Hs.743998 NM_015009 HPRD:15115 PDZRN3 LNX3|SEMACAP3 PDZ domain containing ring finger 3 protein-coding 13-PTNLD9-TUMOR_peak_5187 chr1 205225393 205225540 + 10.27507 NA 5' UTR (NM_001297613, exon 1 of 4) 5' UTR (NM_001297613, exon 1 of 4) 137 NM_001297613 9911 Hs.6360 NM_014858 HPRD:11040 TMCC2 HUCEP11 transmembrane and coiled-coil domain family 2 protein-coding 13-PTNLD9-TUMOR_peak_11277 chr11 114156369 114156677 + 10.27507 NA Intergenic Intergenic -10012 NM_006169 4837 Hs.503911 NM_006169 HPRD:02478 NNMT - nicotinamide N-methyltransferase protein-coding 13-PTNLD9-TUMOR_peak_19929 chr16 84220611 84220788 + 10.27507 NA promoter-TSS (NM_005679) promoter-TSS (NM_005679) -23 NM_001243156 9013 Hs.153022 NM_005679 HPRD:05364 TAF1C MGC:39976|SL1|TAFI110|TAFI95 TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa protein-coding 13-PTNLD9-TUMOR_peak_10662 chr11 75409033 75409262 + 10.27507 NA Intergenic L1ME3C|LINE|L1 -19787 NM_025098 80168 Hs.288568 NM_025098 MOGAT2 DGAT2L5|MGAT2 monoacylglycerol O-acyltransferase 2 protein-coding 13-PTNLD9-TUMOR_peak_38174 chr4 37550730 37550997 + 10.27507 NA intron (NM_001104629, intron 1 of 3) Harlequin-int|LTR|ERV1 -34992 NM_018302 55286 Hs.107527 NM_018302 HPRD:07725 C4orf19 - chromosome 4 open reading frame 19 protein-coding 13-PTNLD9-TUMOR_peak_47331 chr7 43903822 43903945 + 10.27507 NA Intergenic HERVK9-int|LTR|ERVK 5262 NM_032014 64951 Hs.284286 NM_032014 HPRD:17593 MRPS24 MRP-S24|S24mt|bMRP-47|bMRP47 mitochondrial ribosomal protein S24 protein-coding 13-PTNLD9-TUMOR_peak_49880 chr7 158613916 158614231 + 10.26347 NA intron (NM_020728, intron 1 of 21) L4|LINE|RTE 8246 NM_020728 57488 Hs.490795 NM_020728 HPRD:13053 ESYT2 CHR2SYT|E-Syt2|FAM62B extended synaptotagmin-like protein 2 protein-coding 13-PTNLD9-TUMOR_peak_40427 chr5 16809980 16810218 + 10.26080 NA intron (NM_012334, intron 3 of 40) intron (NM_012334, intron 3 of 40) 126286 NM_012334 4651 Hs.481720 NM_012334 HPRD:03283 MYO10 - myosin X protein-coding 13-PTNLD9-TUMOR_peak_18171 chr16 818513 818794 + 10.26080 NA exon (NM_001177355, exon 18 of 18) exon (NM_001177355, exon 18 of 18) -1530 NR_030384 724032 NR_030384 miRBase:MI0003670 MIR662 MIRN662|hsa-mir-662 microRNA 662 ncRNA 13-PTNLD9-TUMOR_peak_10657 chr11 75273740 75273867 + 10.26080 NA intron (NM_001235, intron 1 of 4) intron (NM_001235, intron 1 of 4) 702 NM_001235 871 Hs.596449 NM_001235 HPRD:02968 SERPINH1 AsTP3|CBP1|CBP2|HSP47|OI10|PPROM|RA-A47|SERPINH2|gp46 serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1) protein-coding 13-PTNLD9-TUMOR_peak_19533 chr16 66547117 66547325 + 10.26080 NA intron (NR_073520, intron 8 of 8) Tigger15a|DNA|TcMar-Tigger 36507 NM_001272050 7084 Hs.512619 NM_004614 HPRD:01770 TK2 MTDPS2|MTTK thymidine kinase 2, mitochondrial protein-coding 13-PTNLD9-TUMOR_peak_29202 chr2 178417221 178417583 + 10.26080 NA exon (NM_152517, exon 1 of 1) exon (NM_152517, exon 1 of 1) 122 NM_152517 150737 Hs.447659 NM_152517 TTC30B IFT70|fleer tetratricopeptide repeat domain 30B protein-coding 13-PTNLD9-TUMOR_peak_46536 chr6 167681452 167681674 + 10.25942 NA Intergenic Intergenic -23240 NM_001143947 54346 Hs.567508 NM_018974 HPRD:12148 UNC93A Unc-93A|dJ366N23.1|dJ366N23.2 unc-93 homolog A (C. elegans) protein-coding 13-PTNLD9-TUMOR_peak_23893 chr19 9546152 9546385 + 10.25942 NA promoter-TSS (NM_001271314) promoter-TSS (NM_001271314) -14 NM_001271314 10781 Hs.656185 NM_006631 HPRD:06882 ZNF266 HZF1 zinc finger protein 266 protein-coding 13-PTNLD9-TUMOR_peak_31523 chr20 51214927 51215151 + 10.25942 NA Intergenic L1PA13|LINE|L1 -22338 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 13-PTNLD9-TUMOR_peak_40275 chr5 9523627 9523783 + 10.25942 NA intron (NM_003966, intron 1 of 22) intron (NM_003966, intron 1 of 22) 12260 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 CTD-2201E9.1 - uncharacterized LOC101929338 ncRNA 13-PTNLD9-TUMOR_peak_46727 chr7 2797635 2797773 + 10.25942 NA intron (NM_007353, intron 2 of 3) intron (NM_007353, intron 2 of 3) 5070 NM_001282440 2768 Hs.487341 NM_007353 HPRD:05093 GNA12 NNX3|RMP|gep guanine nucleotide binding protein (G protein) alpha 12 protein-coding 13-PTNLD9-TUMOR_peak_35897 chr3 130313627 130313911 + 10.25942 NA intron (NM_001102608, intron 17 of 35) THE1B|LTR|ERVL-MaLR 34591 NM_001102608 131873 Hs.591282 NM_001102608 ENSG00000206384 COL6A6 - collagen, type VI, alpha 6 protein-coding 13-PTNLD9-TUMOR_peak_14242 chr12 125313912 125314114 + 10.25942 NA intron (NM_001082959, intron 1 of 11) L2a|LINE|L2 34506 NM_005505 949 Hs.731377 NM_005505 HPRD:03024 SCARB1 CD36L1|CLA-1|CLA1|HDLQTL6|SR-BI|SRB1 scavenger receptor class B, member 1 protein-coding 13-PTNLD9-TUMOR_peak_17643 chr15 74532509 74532738 + 10.25942 NA intron (NM_025055, intron 1 of 18) intron (NM_025055, intron 1 of 18) 3993 NM_025055 80125 Hs.383206 NM_025055 HPRD:09959 CCDC33 CT61 coiled-coil domain containing 33 protein-coding 13-PTNLD9-TUMOR_peak_16136 chr14 69408586 69408972 + 10.25942 NA intron (NM_001102, intron 1 of 20) intron (NM_001102, intron 1 of 20) 37304 NM_001130004 87 Hs.509765 NM_001102 HPRD:00020 ACTN1 BDPLT15 actinin, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_32997 chr22 25796872 25797288 + 10.25942 NA Intergenic Intergenic -19536 NM_001135772 91355 Hs.634058 NM_182492 HPRD:13200 LRP5L - low density lipoprotein receptor-related protein 5-like protein-coding 13-PTNLD9-TUMOR_peak_22087 chr17 74823871 74824083 + 10.25942 NA Intergenic Intergenic 28851 NR_110837 101928514 Hs.617206 NR_110837 LOC101928514 - uncharacterized LOC101928514 ncRNA 13-PTNLD9-TUMOR_peak_42362 chr5 140777659 140777948 + 10.25942 NA exon (NM_032099, exon 1 of 1) exon (NM_032099, exon 1 of 1) 108 NM_018925 56101 Hs.368160 NM_018925 PCDHGB5 PCDH-GAMMA-B5 protocadherin gamma subfamily B, 5 protein-coding 13-PTNLD9-TUMOR_peak_45281 chr6 52226849 52227026 + 10.25942 NA promoter-TSS (NM_133367) promoter-TSS (NM_133367) 11 NM_133367 85315 Hs.239388 NM_133367 HPRD:07415 PAQR8 C6orf33|LMPB1|MPRB progestin and adipoQ receptor family member VIII protein-coding 13-PTNLD9-TUMOR_peak_19859 chr16 80966729 80966989 + 10.25942 NA Intergenic Intergenic -73244 NM_001270474 55839 Hs.726537 NM_018455 HPRD:12528 CENPN BM039|C16orf60|CENP-N|ICEN32 centromere protein N protein-coding 13-PTNLD9-TUMOR_peak_12828 chr12 52674726 52675019 + 10.25531 NA Intergenic Intergenic 10427 NM_002281 3887 Hs.658118 NM_002281 HPRD:03691 KRT81 HB1|Hb-1|KRTHB1|MLN137|ghHkb1|hHAKB2-1 keratin 81 protein-coding 13-PTNLD9-TUMOR_peak_1255 chr1 39861174 39861392 + 10.25446 NA intron (NM_012090, intron 52 of 92) intron (NM_012090, intron 52 of 92) -13893 NM_015038 643314 Hs.658760 NM_015038 ENSG00000255103 KIAA0754 - KIAA0754 protein-coding 13-PTNLD9-TUMOR_peak_17299 chr15 52395809 52395940 + 10.25398 NA Intergenic Intergenic 9098 NM_020396 10017 Hs.283672 NM_020396 HPRD:06071 BCL2L10 BCL-B|Boo|Diva BCL2-like 10 (apoptosis facilitator) protein-coding 13-PTNLD9-TUMOR_peak_2418 chr1 90218457 90218640 + 10.25398 NA Intergenic L1PA2|LINE|L1 -68025 NM_001134479 55144 Hs.482087 NM_018103 HPRD:11287 LRRC8D LRRC5 leucine rich repeat containing 8 family, member D protein-coding 13-PTNLD9-TUMOR_peak_17868 chr15 85143586 85143738 + 10.25398 NA promoter-TSS (NM_017894) promoter-TSS (NM_017894) -587 NM_181877 54993 Hs.594023 NM_017894 HPRD:15898 ZSCAN2 ZFP29|ZNF854 zinc finger and SCAN domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_21920 chr17 71336333 71336635 + 10.25398 NA intron (NM_001144952, intron 44 of 44) L1MB5|LINE|L1 -28341 NM_012121 23580 Hs.3903 NM_012121 HPRD:08383 CDC42EP4 BORG4|CEP4|KAIA1777 CDC42 effector protein (Rho GTPase binding) 4 protein-coding 13-PTNLD9-TUMOR_peak_11361 chr11 118045774 118046105 + 10.25398 NA intron (NM_004588, intron 1 of 3) MIRb|SINE|MIR 1398 NM_004588 6327 Hs.129783 NM_004588 HPRD:03208 SCN2B ATFB14 sodium channel, voltage-gated, type II, beta subunit protein-coding 13-PTNLD9-TUMOR_peak_1940 chr1 59165489 59165840 + 10.25398 NA promoter-TSS (NM_001085487) promoter-TSS (NM_001085487) 83 NM_001085487 114803 Hs.744921 NM_001085487 ENSG00000162601 MYSM1 2A-DUB|2ADUB Myb-like, SWIRM and MPN domains 1 protein-coding 13-PTNLD9-TUMOR_peak_47798 chr7 69006988 69007369 + 10.25398 NA Intergenic AluSz|SINE|Alu 55303 NR_108105 100507468 Hs.362492 NR_108105 LOC100507468 - uncharacterized LOC100507468 ncRNA 13-PTNLD9-TUMOR_peak_35217 chr3 101772346 101772511 + 10.25398 NA Intergenic Intergenic 112725 NR_026934 152225 Hs.376768 NR_026934 ENSG00000214407 LOC152225 - uncharacterized LOC152225 ncRNA 13-PTNLD9-TUMOR_peak_21376 chr17 47049707 47049998 + 10.25398 NA Intergenic C-rich|Low_complexity|Low_complexity -3897 NM_004123 2695 Hs.1454 NM_004123 HPRD:15925 GIP - gastric inhibitory polypeptide protein-coding 13-PTNLD9-TUMOR_peak_1154 chr1 36886517 36886661 + 10.25398 NA intron (NM_145047, intron 7 of 9) intron (NM_145047, intron 7 of 9) -23096 NM_032881 84967 Hs.603131 NM_032881 HPRD:14326 LSM10 MST074|MSTP074 LSM10, U7 small nuclear RNA associated protein-coding 13-PTNLD9-TUMOR_peak_19564 chr16 67194858 67195015 + 10.25240 NA intron (NM_018378, intron 1 of 2) intron (NM_018378, intron 1 of 2) 1045 NM_018378 55336 Hs.710714 NM_018378 HPRD:16430 FBXL8 FBL8 F-box and leucine-rich repeat protein 8 protein-coding 13-PTNLD9-TUMOR_peak_50408 chr8 26498476 26498676 + 10.25122 NA intron (NM_001197293, intron 8 of 13) intron (NM_001197293, intron 8 of 13) 62655 NM_001244604 1808 Hs.593187 NM_001386 HPRD:03914 DPYSL2 CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2 dihydropyrimidinase-like 2 protein-coding 13-PTNLD9-TUMOR_peak_53940 chr9 92221155 92221352 + 10.25122 NA 3' UTR (NM_006705, exon 4 of 4) 3' UTR (NM_006705, exon 4 of 4) 1326 NM_006705 10912 Hs.9701 NM_006705 HPRD:05383 GADD45G CR6|DDIT2|GADD45gamma|GRP17 growth arrest and DNA-damage-inducible, gamma protein-coding 13-PTNLD9-TUMOR_peak_20591 chr17 18625174 18625486 + 10.24814 NA promoter-TSS (NM_001037330) promoter-TSS (NM_001037330) -72 NM_001037330 147166 Hs.164324 NM_001037330 HPRD:18731 TRIM16L TRIM70 tripartite motif containing 16-like protein-coding 13-PTNLD9-TUMOR_peak_17629 chr15 74274994 74275264 + 10.24814 NA TTS (NM_001256677) TTS (NM_001256677) 9560 NM_001256675 9399 Hs.194816 NM_004809 HPRD:16314 STOML1 SLP-1|STORP|hUNC-24 stomatin (EPB72)-like 1 protein-coding 13-PTNLD9-TUMOR_peak_4995 chr1 201952069 201952244 + 10.24814 NA exon (NM_020216, exon 1 of 11) exon (NM_020216, exon 1 of 11) 390 NM_020216 6051 Hs.497391 NM_020216 HPRD:04055 RNPEP - arginyl aminopeptidase (aminopeptidase B) protein-coding 13-PTNLD9-TUMOR_peak_49702 chr7 151689544 151689644 + 10.24814 NA intron (NR_033169, intron 6 of 9) MLT1C|LTR|ERVL-MaLR -33184 NM_022087 63917 Hs.647109 NM_022087 HPRD:13560 GALNT11 GALNACT11 polypeptide N-acetylgalactosaminyltransferase 11 protein-coding 13-PTNLD9-TUMOR_peak_33922 chr3 15170666 15170877 + 10.24814 NA Intergenic Intergenic -30116 NM_022340 64145 Hs.475565 NM_022340 HPRD:15732 ZFYVE20 Rabenosyn-5 zinc finger, FYVE domain containing 20 protein-coding 13-PTNLD9-TUMOR_peak_48751 chr7 106125565 106125808 + 10.24814 NA Intergenic Intergenic 175948 NM_175884 168455 Hs.29692 NM_175884 HPRD:08202 CCDC71L C7orf74 coiled-coil domain containing 71-like protein-coding 13-PTNLD9-TUMOR_peak_54824 chr9 130681672 130682021 + 10.24814 NA Intergenic Intergenic -2541 NM_175040 27090 Hs.3972 NM_014403 HPRD:05902 ST6GALNAC4 IV|SIAT3-C|SIAT3C|SIAT7-D|SIAT7D|ST6GALNACIV|ST6GalNAc ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4 protein-coding 13-PTNLD9-TUMOR_peak_35267 chr3 107700592 107700909 + 10.24667 NA Intergenic Intergenic 98698 NR_015394 285205 Hs.134882 NR_015394 ENSG00000240423 LINC00636 - long intergenic non-protein coding RNA 636 ncRNA 13-PTNLD9-TUMOR_peak_46877 chr7 8301683 8301928 + 10.24589 NA promoter-TSS (NM_022307) promoter-TSS (NM_022307) -50 NR_125740 100505938 Hs.729535 NR_125740 LOC100505938 - uncharacterized LOC100505938 ncRNA 13-PTNLD9-TUMOR_peak_43163 chr5 175980380 175980657 + 10.24589 NA intron (NM_017675, intron 1 of 31) intron (NM_017675, intron 1 of 31) 4175 NM_017675 54825 Hs.4205 NM_017675 HPRD:15103 CDHR2 PCDH24|PCLKC cadherin-related family member 2 protein-coding 13-PTNLD9-TUMOR_peak_7291 chr10 48695909 48696132 + 10.24589 NA Intergenic Intergenic 110965 NM_001042357 26095 Hs.440733 NM_015605 HPRD:10898 PTPN20B CT126|PTPN20A|bA142I17.1|bA42B19.1|hPTPN20 protein tyrosine phosphatase, non-receptor type 20B protein-coding 13-PTNLD9-TUMOR_peak_34640 chr3 52039708 52040037 + 10.24589 NA Intergenic Intergenic -9914 NM_000992 6159 Hs.425125 NM_000992 HPRD:03495 RPL29 HIP|HUMRPL29|L29|RPL29P10|RPL29_3_370 ribosomal protein L29 protein-coding 13-PTNLD9-TUMOR_peak_10994 chr11 96042322 96042632 + 10.24589 NA intron (NM_032427, intron 1 of 4) intron (NM_032427, intron 1 of 4) -32125 NR_036125 100422991 NR_036125 miRBase:MI0014197 MIR1260B - microRNA 1260b ncRNA 13-PTNLD9-TUMOR_peak_4621 chr1 181042827 181043150 + 10.24589 NA Intergenic MIR3|SINE|MIR -14650 NM_016545 51278 Hs.15725 NM_016545 HPRD:06210 IER5 SBBI48 immediate early response 5 protein-coding 13-PTNLD9-TUMOR_peak_22158 chr17 76338534 76338791 + 10.22997 NA Intergenic Intergenic 17498 NM_003955 9021 Hs.527973 NM_003955 HPRD:05006 SOCS3 ATOD4|CIS3|Cish3|SOCS-3|SSI-3|SSI3 suppressor of cytokine signaling 3 protein-coding 13-PTNLD9-TUMOR_peak_10108 chr11 63342446 63342606 + 10.22533 NA intron (NM_001128203, intron 4 of 4) intron (NM_001128203, intron 4 of 4) -11671 NM_017878 54979 Hs.272805 NM_017878 HPRD:13670 HRASLS2 PLA1/2-2 HRAS-like suppressor 2 protein-coding 13-PTNLD9-TUMOR_peak_31604 chr20 53235827 53236022 + 10.22533 NA intron (NM_177959, intron 6 of 7) intron (NM_177959, intron 6 of 7) 143667 NM_177959 55816 Hs.473133 NM_018431 HPRD:16317 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 13-PTNLD9-TUMOR_peak_41084 chr5 65850067 65850385 + 10.22533 NA Intergenic Intergenic -41950 NM_001164664 375449 Hs.595458 NM_015183 HPRD:14195 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 13-PTNLD9-TUMOR_peak_12927 chr12 54656308 54656458 + 10.22533 NA intron (NM_012117, intron 1 of 4) intron (NM_012117, intron 1 of 4) -3013 NM_001127321 23468 Hs.349283 NM_012117 HPRD:05131 CBX5 HEL25|HP1|HP1A chromobox homolog 5 protein-coding 13-PTNLD9-TUMOR_peak_35983 chr3 133387697 133387866 + 10.22533 NA Intergenic LTR16C|LTR|ERVL -7044 NM_007027 11073 Hs.593379 NM_007027 HPRD:09678 TOPBP1 TOP2BP1 topoisomerase (DNA) II binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_17105 chr15 41234044 41234252 + 10.22533 NA Intergenic CpG -11488 NM_001142776 79094 Hs.155569 NM_024111 HPRD:14634 CHAC1 - ChaC, cation transport regulator homolog 1 (E. coli) protein-coding 13-PTNLD9-TUMOR_peak_26797 chr2 46157641 46157841 + 10.22533 NA intron (NM_005400, intron 2 of 14) intron (NM_005400, intron 2 of 14) 278698 NM_005400 5581 Hs.580351 NM_005400 HPRD:01500 PRKCE PKCE|nPKC-epsilon protein kinase C, epsilon protein-coding 13-PTNLD9-TUMOR_peak_4195 chr1 162660842 162660999 + 10.22533 NA intron (NM_006182, intron 2 of 17) intron (NM_006182, intron 2 of 17) 58692 NM_001014796 4921 Hs.275757 NM_006182 HPRD:01868 DDR2 MIG20a|NTRKR3|TKT|TYRO10 discoidin domain receptor tyrosine kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_14508 chr13 30250827 30251004 + 10.22533 NA Intergenic Intergenic -81090 NM_003045 6541 Hs.14846 NM_003045 HPRD:00091 SLC7A1 ATRC1|CAT-1|ERR|HCAT1|REC1L solute carrier family 7 (cationic amino acid transporter, y+ system), member 1 protein-coding 13-PTNLD9-TUMOR_peak_11050 chr11 102049023 102049263 + 10.22533 NA intron (NM_001282098, intron 3 of 6) intron (NM_001282098, intron 3 of 6) 65972 NM_001195045 10413 Hs.503692 NM_006106 HPRD:09424 YAP1 COB1|YAP|YAP2|YAP65|YKI Yes-associated protein 1 protein-coding 13-PTNLD9-TUMOR_peak_25291 chr19 48844371 48844516 + 10.22533 NA intron (NM_018273, intron 6 of 7) intron (NM_018273, intron 6 of 7) 15814 NM_001425 2014 Hs.9999 NM_001425 HPRD:18514 EMP3 YMP epithelial membrane protein 3 protein-coding 13-PTNLD9-TUMOR_peak_31769 chr20 61002509 61002774 + 10.22533 NA promoter-TSS (NM_080833) promoter-TSS (NM_080833) -12 NM_080833 140893 Hs.180374 NM_080833 HPRD:12751 RBBP8NL C20orf151 RBBP8 N-terminal like protein-coding 13-PTNLD9-TUMOR_peak_11501 chr11 123951387 123951597 + 10.22533 NA Intergenic Intergenic -34619 NM_198315 4013 Hs.152944 NM_014622 HPRD:04238 VWA5A BCSC-1|BCSC1|LOH11CR2A von Willebrand factor A domain containing 5A protein-coding 13-PTNLD9-TUMOR_peak_41066 chr5 65157960 65158071 + 10.22533 NA Intergenic AluJb|SINE|Alu -64367 NM_001253701 55914 Hs.591774 NM_018695 HPRD:06090 ERBB2IP ERBIN|HEL-S-78|LAP2 erbb2 interacting protein protein-coding 13-PTNLD9-TUMOR_peak_22501 chr18 6414534 6414635 + 10.22533 NA intron (NM_173464, intron 1 of 19) CpG 326 NM_173464 91133 Hs.128279 NM_173464 HPRD:08198 L3MBTL4 HsT1031 l(3)mbt-like 4 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_52235 chr8 136918371 136918568 + 10.22533 NA Intergenic Intergenic 448753 NM_006558 10656 Hs.444558 NM_006558 HPRD:10007 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH domain containing, RNA binding, signal transduction associated 3 protein-coding 13-PTNLD9-TUMOR_peak_31546 chr20 51948129 51948352 + 10.22533 NA intron (NM_173485, intron 2 of 2) LTR33|LTR|ERVL 146418 NM_001193421 128553 Hs.473117 NM_173485 HPRD:10730 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 13-PTNLD9-TUMOR_peak_17114 chr15 41694602 41694743 + 10.22533 NA promoter-TSS (NR_045620) promoter-TSS (NR_045620) -14 NM_016013 51103 Hs.106529 NM_016013 HPRD:09500 NDUFAF1 CGI65|CIA30 NADH dehydrogenase (ubiquinone) complex I, assembly factor 1 protein-coding 13-PTNLD9-TUMOR_peak_46539 chr6 168083802 168084020 + 10.22533 NA intron (NR_117092, intron 1 of 3) intron (NR_117092, intron 1 of 3) 556 NR_117092 441178 Hs.628956 NM_001025489 LOC441178 - uncharacterized LOC441178 ncRNA 13-PTNLD9-TUMOR_peak_12026 chr12 7053063 7053407 + 10.22439 NA promoter-TSS (NM_138425) promoter-TSS (NM_138425) 32 NM_138425 113246 Hs.405913 NM_138425 HPRD:13609 C12orf57 C10|GRCC10|TEMTYS chromosome 12 open reading frame 57 protein-coding 13-PTNLD9-TUMOR_peak_32536 chr21 45669177 45669544 + 10.22417 NA intron (NM_175867, intron 10 of 11) MER49|LTR|ERV1 -8473 NM_015259 23308 Hs.14155 NM_015259 HPRD:05757 ICOSLG B7-H2|B7H2|B7RP-1|B7RP1|CD275|GL50|ICOS-L|ICOSL|LICOS inducible T-cell co-stimulator ligand protein-coding 13-PTNLD9-TUMOR_peak_44724 chr6 34164131 34164460 + 10.21981 NA Intergenic CpG -40282 NM_145903 3159 Hs.518805 NM_002131 HPRD:02829 HMGA1 HMG-R|HMGA1A|HMGIY high mobility group AT-hook 1 protein-coding 13-PTNLD9-TUMOR_peak_52164 chr8 134260340 134260490 + 10.21981 NA intron (NM_001258432, intron 9 of 13) intron (NM_001258432, intron 9 of 13) 49132 NM_001258432 10397 Hs.372914 NM_006096 HPRD:05586 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 13-PTNLD9-TUMOR_peak_48735 chr7 105683292 105683492 + 10.21981 NA Intergenic Intergenic 69399 NM_182715 6856 Hs.80919 NM_006754 HPRD:15459 SYPL1 H-SP1|SYPL synaptophysin-like 1 protein-coding 13-PTNLD9-TUMOR_peak_10312 chr11 66486095 66486395 + 10.21981 NA intron (NM_006946, intron 2 of 36) intron (NM_006946, intron 2 of 36) 2625 NM_006946 6712 Hs.26915 NM_006946 HPRD:05404 SPTBN2 GTRAP41|SCA5|SCAR14 spectrin, beta, non-erythrocytic 2 protein-coding 13-PTNLD9-TUMOR_peak_30885 chr20 34252784 34253007 + 10.21981 NA promoter-TSS (NM_001198863) promoter-TSS (NM_001198863) -17 NM_152928 8904 Hs.246413 NM_003915 HPRD:05014 CPNE1 COPN1|CPN1 copine I protein-coding 13-PTNLD9-TUMOR_peak_7708 chr10 73734213 73734485 + 10.21981 NA intron (NM_004273, intron 1 of 2) intron (NM_004273, intron 1 of 2) 10229 NM_004273 9469 Hs.158304 NM_004273 HPRD:07052 CHST3 C6ST|C6ST1|HSD carbohydrate (chondroitin 6) sulfotransferase 3 protein-coding 13-PTNLD9-TUMOR_peak_5619 chr1 225935442 225935574 + 10.21981 NA Intergenic AluJo|SINE|Alu -30007 NM_003133 6726 Hs.511425 NM_003133 HPRD:02830 SRP9 ALURBP signal recognition particle 9kDa protein-coding 13-PTNLD9-TUMOR_peak_14231 chr12 125197720 125197942 + 10.21981 NA Intergenic L2a|LINE|L2 -145821 NM_001206654 9612 Hs.137510 NM_006312 HPRD:02910 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 13-PTNLD9-TUMOR_peak_23831 chr19 8208109 8208368 + 10.21981 NA intron (NM_032447, intron 5 of 62) intron (NM_032447, intron 5 of 62) 4147 NM_032447 84467 Hs.370362 NM_032447 HPRD:10538 FBN3 - fibrillin 3 protein-coding 13-PTNLD9-TUMOR_peak_12062 chr12 8111331 8111592 + 10.21981 NA Intergenic Intergenic -22569 NM_006931 6515 Hs.419240 NM_006931 HPRD:00686 SLC2A3 GLUT3 solute carrier family 2 (facilitated glucose transporter), member 3 protein-coding 13-PTNLD9-TUMOR_peak_36384 chr3 150188328 150188516 + 10.21473 NA Intergenic Tigger3b|DNA|TcMar-Tigger 61634 NM_014779 9819 Hs.722470 NM_014779 HPRD:11101 TSC22D2 TILZ4a|TILZ4b|TILZ4c TSC22 domain family, member 2 protein-coding 13-PTNLD9-TUMOR_peak_37350 chr3 194592719 194592987 + 10.21473 NA Intergenic Intergenic 163703 NR_037891 100507391 Hs.590099 NR_037891 ENSG00000237222 LOC100507391 - uncharacterized LOC100507391 ncRNA 13-PTNLD9-TUMOR_peak_45525 chr6 75915563 75916008 + 10.21473 NA promoter-TSS (NM_004370) promoter-TSS (NM_004370) -162 NM_004370 1303 Hs.101302 NM_004370 HPRD:00377 COL12A1 BA209D8.1|COL12A1L|DJ234P15.1 collagen, type XII, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_49213 chr7 134861892 134862080 + 10.21473 NA Intergenic HERV3-int|LTR|ERV1 -6408 NM_001243751 78996 Hs.732134 NM_024033 HPRD:08333 C7orf49 MRI chromosome 7 open reading frame 49 protein-coding 13-PTNLD9-TUMOR_peak_9426 chr11 32334570 32334894 + 10.21473 NA Intergenic Intergenic 117631 NM_001198552 7490 Hs.591980 NM_000378 HPRD:06163 WT1 AWT1|EWS-WT1|GUD|NPHS4|WAGR|WIT-2|WT33 Wilms tumor 1 protein-coding 13-PTNLD9-TUMOR_peak_32470 chr21 44595249 44595433 + 10.21473 NA Intergenic MIRb|SINE|MIR 6223 NM_000394 1409 Hs.184085 NM_000394 HPRD:00427 CRYAA CRYA1|CTRCT9|HSPB4 crystallin, alpha A protein-coding 13-PTNLD9-TUMOR_peak_44491 chr6 30852732 30852893 + 10.21264 NA promoter-TSS (NM_001202523).2 promoter-TSS (NM_001202523).2 55 NM_001202523 780 Hs.631988 NM_001954 HPRD:02678 DDR1 CAK|CD167|DDR|EDDR1|HGK2|MCK10|NEP|NTRK4|PTK3|PTK3A|RTK6|TRKE discoidin domain receptor tyrosine kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_37452 chr3 196705656 196705767 + 10.21019 NA Intergenic Intergenic -9969 NM_025163 80235 Hs.518403 NM_025163 HPRD:18076 PIGZ GPI-MT-IV|PIG-Z|SMP3 phosphatidylinositol glycan anchor biosynthesis, class Z protein-coding 13-PTNLD9-TUMOR_peak_38818 chr4 87825408 87825792 + 10.21019 NA Intergenic LTR12D|LTR|ERV1 -12025 NM_144645 132989 Hs.339646 NM_144645 HPRD:14511 C4orf36 - chromosome 4 open reading frame 36 protein-coding 13-PTNLD9-TUMOR_peak_25352 chr19 49578226 49578366 + 10.21019 NA Intergenic LTR13|LTR|ERVK -2098 NM_031886 3743 Hs.306973 NM_031886 HPRD:01445 KCNA7 HAK6|KV1.7 potassium voltage-gated channel, shaker-related subfamily, member 7 protein-coding 13-PTNLD9-TUMOR_peak_12460 chr12 32204523 32204857 + 10.21019 NA Intergenic LTR44|LTR|ERV1 -55495 NM_001003398 636 Hs.505202 NM_001714 HPRD:03730 BICD1 BICD bicaudal D homolog 1 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_1400 chr1 42500890 42501026 + 10.21019 NA intron (NR_038261, intron 1 of 3) CpG 638 NR_038261 59269 Hs.403972 NM_024503 HPRD:09442 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 13-PTNLD9-TUMOR_peak_17260 chr15 49462258 49462424 + 10.21019 NA promoter-TSS (NR_039866) promoter-TSS (NR_039866) 128 NM_002044 2585 Hs.122006 NM_002044 HPRD:00657 GALK2 GK2 galactokinase 2 protein-coding 13-PTNLD9-TUMOR_peak_40318 chr5 10590809 10590947 + 10.21019 NA intron (NM_001164440, intron 1 of 3) L1MEg|LINE|L1 26443 NM_001164440 651746 Hs.26039 NM_001164440 ANKRD33B - ankyrin repeat domain 33B protein-coding 13-PTNLD9-TUMOR_peak_52140 chr8 133739862 133740188 + 10.21019 NA intron (NM_001145153, intron 5 of 8) intron (NM_001145153, intron 5 of 8) 32889 NM_144649 137835 Hs.293842 NM_144649 HPRD:08154 TMEM71 - transmembrane protein 71 protein-coding 13-PTNLD9-TUMOR_peak_19482 chr16 58493387 58493518 + 10.21019 NA Intergenic MamSINE1|SINE|tRNA -4097 NM_020465 65009 Hs.322430 NM_020465 HPRD:14817 NDRG4 BDM1|SMAP-8|SMAP8 NDRG family member 4 protein-coding 13-PTNLD9-TUMOR_peak_40593 chr5 34717847 34718109 + 10.21019 NA intron (NM_001145525, intron 4 of 19) intron (NM_001145525, intron 4 of 19) 30314 NM_001145523 26064 Hs.431400 NM_015577 HPRD:09416 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 13-PTNLD9-TUMOR_peak_32102 chr21 32090682 32090914 + 10.21019 NA TTS (NM_001164435) TTS (NM_001164435) 297 NM_001164435 100288323 Hs.580877 NM_001164435 ENSG00000231068 KRTAP21-3 - keratin associated protein 21-3 protein-coding 13-PTNLD9-TUMOR_peak_20442 chr17 8311788 8311999 + 10.21019 NA Intergenic Intergenic -10749 NM_001146684 643904 Hs.526550 NM_001146684 ENSG00000189051 RNF222 - ring finger protein 222 protein-coding 13-PTNLD9-TUMOR_peak_793 chr1 27216682 27216846 + 10.21019 NA TTS (NM_022078) TTS (NM_022078) 105 NM_018066 54707 Hs.14333 NM_018066 GPN2 ATPBD1B GPN-loop GTPase 2 protein-coding 13-PTNLD9-TUMOR_peak_29207 chr2 178499144 178499261 + 10.21019 NA intron (NM_001077197, intron 20 of 20) AluY|SINE|Alu -15508 NM_152275 92104 Hs.128384 NM_152275 TTC30A - tetratricopeptide repeat domain 30A protein-coding 13-PTNLD9-TUMOR_peak_53536 chr9 70717827 70717929 + 10.21019 NA Intergenic Intergenic -138927 NM_001286836 220869 Hs.355950 NM_001024916 HPRD:14134 CBWD5 DC36 COBW domain containing 5 protein-coding 13-PTNLD9-TUMOR_peak_41601 chr5 98274295 98274430 + 10.21019 NA Intergenic Intergenic 9524 NR_036530 100289230 Hs.552095 NR_036530 LOC100289230 - uncharacterized LOC100289230 ncRNA 13-PTNLD9-TUMOR_peak_43511 chr6 3162868 3163238 + 10.20990 NA Intergenic CpG -5270 NM_001069 7280 Hs.654543 NM_001069 HPRD:01852 TUBB2A CDCBM5|TUBB|TUBB2|dJ40E16.7 tubulin, beta 2A class IIa protein-coding 13-PTNLD9-TUMOR_peak_11335 chr11 117077339 117077598 + 10.20990 NA exon (NM_004716, exon 16 of 17) exon (NM_004716, exon 16 of 17) -4838 NR_045215 100652768 Hs.732365 NR_045215 LOC100652768 - uncharacterized LOC100652768 ncRNA 13-PTNLD9-TUMOR_peak_50755 chr8 42509836 42510180 + 10.20990 NA Intergenic MER5A|DNA|hAT-Charlie -42554 NM_000749 1142 Hs.654576 NM_000749 HPRD:00336 CHRNB3 - cholinergic receptor, nicotinic, beta 3 (neuronal) protein-coding 13-PTNLD9-TUMOR_peak_47371 chr7 44679406 44679637 + 10.20990 NA intron (NM_001003941, intron 2 of 8) intron (NM_001003941, intron 2 of 8) 33400 NM_002541 4967 Hs.488181 NM_002541 HPRD:08938 OGDH AKGDH|E1k|OGDC oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide) protein-coding 13-PTNLD9-TUMOR_peak_24405 chr19 18511243 18511412 + 10.20990 NA Intergenic L1MC|LINE|L1 -2912 NM_145256 126364 Hs.332156 NM_145256 HPRD:09597 LRRC25 MAPA leucine rich repeat containing 25 protein-coding 13-PTNLD9-TUMOR_peak_39768 chr4 159731941 159732133 + 10.20990 NA intron (NM_020840, intron 1 of 16) intron (NM_020840, intron 1 of 16) 41855 NM_020840 57600 Hs.652441 NM_020840 ENSG00000052795 FNIP2 FNIPL|MAPO1 folliculin interacting protein 2 protein-coding 13-PTNLD9-TUMOR_peak_33255 chr22 38597928 38598159 + 10.20990 NA promoter-TSS (NM_001161573) promoter-TSS (NM_001161573) 104 NM_001161574 23764 Hs.517617 NM_012323 HPRD:05343 MAFF U-MAF|hMafF v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog F protein-coding 13-PTNLD9-TUMOR_peak_32879 chr22 22465830 22466064 + 10.20990 NA Intergenic Intergenic -128707 NM_001282113 8940 Hs.436401 NM_003935 HPRD:04662 TOP3B TOP3B1 topoisomerase (DNA) III beta protein-coding 13-PTNLD9-TUMOR_peak_3248 chr1 144577924 144578058 + 10.20487 NA intron (NM_001278267, intron 52 of 130) intron (NM_001278267, intron 52 of 130) 34728 NR_003242 767846 Hs.657186 NR_003242 PFN1P2 C1orf152|COAS3 profilin 1 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_1655 chr1 47272374 47272647 + 10.20203 NA intron (NM_001099772, intron 1 of 11) intron (NM_001099772, intron 1 of 11) 7840 NM_000779 1580 Hs.436317 NM_000779 HPRD:00491 CYP4B1 CYPIVB1|P-450HP cytochrome P450, family 4, subfamily B, polypeptide 1 protein-coding 13-PTNLD9-TUMOR_peak_46987 chr7 20254801 20254924 + 10.19784 NA intron (NM_182762, intron 1 of 6) intron (NM_182762, intron 1 of 6) 2151 NM_182762 346389 Hs.598388 NM_182762 HPRD:12381 MACC1 7A5|SH3BP4L metastasis associated in colon cancer 1 protein-coding 13-PTNLD9-TUMOR_peak_51391 chr8 101250553 101250795 + 10.19617 NA intron (NM_172218, intron 16 of 18) intron (NM_172218, intron 16 of 18) 64813 NM_015435 25897 Hs.292882 NM_015435 HPRD:06176 RNF19A RNF19 ring finger protein 19A, RBR E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_16310 chr14 76863076 76863275 + 10.19617 NA intron (NM_004452, intron 1 of 10) intron (NM_004452, intron 1 of 10) 25485 NM_004452 2103 Hs.435845 NM_004452 HPRD:03700 ESRRB DFNB35|ERR2|ERRb|ESRL2|NR3B2 estrogen-related receptor beta protein-coding 13-PTNLD9-TUMOR_peak_40032 chr4 186577843 186577981 + 10.19617 NA 5' UTR (NM_001145675, exon 1 of 15) 5' UTR (NM_001145675, exon 1 of 15) 211 NM_001145675 8470 Hs.619806 NM_003603 HPRD:12473 SORBS2 ARGBP2|PRO0618 sorbin and SH3 domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_39301 chr4 128063118 128063289 + 10.19617 NA Intergenic Intergenic -490884 NM_015693 27152 Hs.391481 NM_015693 INTU INT|PDZD6|PDZK6 inturned planar cell polarity protein protein-coding 13-PTNLD9-TUMOR_peak_37763 chr4 6013554 6013664 + 10.19617 NA Intergenic Intergenic -88554 NR_039608 100616201 NR_039608 miRBase:MI0016749 MIR378D1 - microRNA 378d-1 ncRNA 13-PTNLD9-TUMOR_peak_23767 chr19 6076783 6076966 + 10.19617 NA intron (NM_000635, intron 1 of 17) intron (NM_000635, intron 1 of 17) 33790 NM_000635 5990 Hs.465709 NM_000635 HPRD:00824 RFX2 - regulatory factor X, 2 (influences HLA class II expression) protein-coding 13-PTNLD9-TUMOR_peak_31968 chr21 17127208 17127397 + 10.19617 NA intron (NM_001283041, intron 1 of 25) intron (NM_001283041, intron 1 of 25) 24958 NM_001283041 29761 Hs.743994 NM_013396 HPRD:05296 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 13-PTNLD9-TUMOR_peak_21034 chr17 39288269 39288511 + 10.19617 NA Intergenic Intergenic -7971 NM_031854 83755 Hs.572443 NM_031854 HPRD:13941 KRTAP4-12 KAP4.12|KRTAP4.12 keratin associated protein 4-12 protein-coding 13-PTNLD9-TUMOR_peak_22839 chr18 24716284 24716402 + 10.19617 NA intron (NM_001256316, intron 2 of 4) intron (NM_001256316, intron 2 of 4) 48959 NM_001256316 83539 Hs.44584 NM_031422 ENSG00000154080 CHST9 GALNAC4ST-2 carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9 protein-coding 13-PTNLD9-TUMOR_peak_17441 chr15 64799599 64799753 + 10.19617 NA intron (NM_015042, intron 1 of 8) intron (NM_015042, intron 1 of 8) 8057 NM_015042 23060 Hs.595451 NM_015042 HPRD:18754 ZNF609 - zinc finger protein 609 protein-coding 13-PTNLD9-TUMOR_peak_56988 chrY 21154717 21154872 + 10.19617 NA promoter-TSS (NM_013230) promoter-TSS (NM_013230) 6 NR_117090 100133941 Hs.644105 NM_013230 CD24 CD24A CD24 molecule protein-coding 13-PTNLD9-TUMOR_peak_5597 chr1 224895872 224896076 + 10.19617 NA intron (NM_152495, intron 3 of 5) intron (NM_152495, intron 3 of 5) 91795 NM_152495 149111 Hs.731723 NM_152495 HPRD:08799 CNIH3 CNIH-3 cornichon family AMPA receptor auxiliary protein 3 protein-coding 13-PTNLD9-TUMOR_peak_27393 chr2 85116060 85116192 + 10.19617 NA Intergenic L2b|LINE|L2 -7757 NM_001277053 129293 Hs.469134 NM_001080824 ENSG00000186854 TRABD2A C2orf89|TIKI1 TraB domain containing 2A protein-coding 13-PTNLD9-TUMOR_peak_15855 chr14 56247128 56247388 + 10.19617 NA TTS (NR_026797) TTS (NR_026797) 14295 NR_004844 645683 Hs.663461 NR_004844 ENSG00000177350 RPL13AP3 RPL13A_11_1370 ribosomal protein L13a pseudogene 3 pseudo 13-PTNLD9-TUMOR_peak_12973 chr12 56334111 56334283 + 10.19617 NA exon (NM_201445, exon 12 of 25) exon (NM_201445, exon 12 of 25) 8385 NM_201554 1606 Hs.524488 NM_001345 HPRD:00517 DGKA DAGK|DAGK1|DGK-alpha diacylglycerol kinase, alpha 80kDa protein-coding 13-PTNLD9-TUMOR_peak_53809 chr9 86500573 86500730 + 10.19617 NA intron (NM_017576, intron 9 of 17) AluJb|SINE|Alu 35729 NM_001271927 55582 Hs.697514 NM_017576 HPRD:11179 KIF27 - kinesin family member 27 protein-coding 13-PTNLD9-TUMOR_peak_14930 chr13 88323576 88323681 + 10.19617 NA promoter-TSS (NR_033829) promoter-TSS (NR_033829) -410 NR_033829 642345 Hs.508337 NR_033829 ENSG00000228824 MIR4500HG - MIR4500 host gene (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_43271 chr5 178266465 178266599 + 10.19617 NA Intergenic Intergenic -20422 NM_058230 117608 Hs.724051 NM_058230 ZNF354B KID2 zinc finger protein 354B protein-coding 13-PTNLD9-TUMOR_peak_6654 chr10 22567137 22567347 + 10.19617 NA Intergenic AluY|SINE|Alu 26241 NR_038921 100130992 Hs.48501 NR_038921 LOC100130992 - uncharacterized LOC100130992 ncRNA 13-PTNLD9-TUMOR_peak_32297 chr21 39008878 39009101 + 10.19617 NA intron (NM_002240, intron 3 of 3) intron (NM_002240, intron 3 of 3) 216387 NM_001396 1859 Hs.368240 NM_001396 HPRD:09018 DYRK1A DYRK|DYRK1|HP86|MNB|MNBH|MRD7 dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A protein-coding 13-PTNLD9-TUMOR_peak_29301 chr2 186835199 186835321 + 10.19617 NA Intergenic LTR22A|LTR|ERVK 115784 NR_110218 101927217 Hs.130011 NR_110218 LINC01473 - long intergenic non-protein coding RNA 1473 ncRNA 13-PTNLD9-TUMOR_peak_37627 chr4 2601622 2601769 + 10.19617 NA Intergenic AluSz6|SINE|Alu -25464 NM_001256667 8603 Hs.652364 NM_003704 HPRD:09850 FAM193A C4orf8 family with sequence similarity 193, member A protein-coding 13-PTNLD9-TUMOR_peak_35896 chr3 130236560 130236685 + 10.19617 NA Intergenic Intergenic -42556 NM_001102608 131873 Hs.591282 NM_001102608 ENSG00000206384 COL6A6 - collagen, type VI, alpha 6 protein-coding 13-PTNLD9-TUMOR_peak_54457 chr9 114792452 114792651 + 10.19617 NA intron (NR_036085, intron 3 of 3) intron (NR_036085, intron 3 of 3) 98171 NR_039814 100616114 NR_039814 MIR4668 - microRNA 4668 ncRNA 13-PTNLD9-TUMOR_peak_43623 chr6 5906041 5906174 + 10.19617 NA Intergenic MLT1F2|LTR|ERVL-MaLR 98170 NM_001278711 51299 Hs.103291 NM_016588 HPRD:07592 NRN1 NRN|dJ380B8.2 neuritin 1 protein-coding 13-PTNLD9-TUMOR_peak_34186 chr3 31787618 31787832 + 10.19617 NA intron (NM_017784, intron 5 of 11) L1ME5|LINE|L1 42020 NR_049771 100874206 Hs.662428 NR_049771 ENSG00000232490 OSBPL10-AS1 - OSBPL10 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_17364 chr15 59086192 59086393 + 10.19617 NA intron (NM_001040450, intron 2 of 8) L2|LINE|L2 22899 NM_001040450 54629 Hs.591122 NM_019092 HPRD:13835 FAM63B - family with sequence similarity 63, member B protein-coding 13-PTNLD9-TUMOR_peak_4103 chr1 160501250 160501392 + 10.19617 NA Intergenic SVA_A|Other|Other -8269 NM_052931 114836 Hs.492348 NM_052931 HPRD:05920 SLAMF6 CD352|KALI|KALIb|Ly108|NTB-A|NTBA|SF2000 SLAM family member 6 protein-coding 13-PTNLD9-TUMOR_peak_55753 chrX 42389363 42389542 + 10.19617 NA Intergenic LTR16A2|LTR|ERVL 248034 NR_002191 80316 Hs.127689 NM_025210 PPP1R2P9 I-4 protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 9 pseudo 13-PTNLD9-TUMOR_peak_2795 chr1 110502640 110502811 + 10.19617 NA Intergenic Intergenic -24662 NM_006621 10768 Hs.743973 NM_006621 HPRD:07613 AHCYL1 DCAL|IRBIT|PPP1R78|PRO0233|XPVKONA adenosylhomocysteinase-like 1 protein-coding 13-PTNLD9-TUMOR_peak_593 chr1 19948772 19948931 + 10.19617 NA intron (NR_033758, intron 3 of 4) intron (NR_033758, intron 3 of 4) 14550 NR_077246 644068 Hs.660760 NR_077246 RPS14P3 RPS14_1_16 ribosomal protein S14 pseudogene 3 pseudo 13-PTNLD9-TUMOR_peak_56647 chrX 152201047 152201323 + 10.19617 NA Intergenic Intergenic -23581 NM_013364 29944 Hs.449627 NM_013364 HPRD:06677 PNMA3 MA3|MA5 paraneoplastic Ma antigen 3 protein-coding 13-PTNLD9-TUMOR_peak_54125 chr9 99540191 99540575 + 10.19617 NA promoter-TSS (NM_014930) promoter-TSS (NM_014930) -55 NM_014930 22869 Hs.75264 NM_014930 HPRD:18348 ZNF510 - zinc finger protein 510 protein-coding 13-PTNLD9-TUMOR_peak_21038 chr17 39621074 39621262 + 10.19617 NA intron (NM_002278, intron 3 of 6) intron (NM_002278, intron 3 of 6) 2470 NM_002278 3882 Hs.41752 NM_002278 HPRD:04134 KRT32 HA2|HKA2|KRTHA2|hHa2 keratin 32 protein-coding 13-PTNLD9-TUMOR_peak_47545 chr7 55614638 55614854 + 10.19617 NA intron (NM_030796, intron 1 of 4) intron (NM_030796, intron 1 of 4) 5720 NM_001284282 81552 Hs.488307 NM_030796 HPRD:08526 VOPP1 ECOP|GASP vesicular, overexpressed in cancer, prosurvival protein 1 protein-coding 13-PTNLD9-TUMOR_peak_56404 chrX 118175222 118175389 + 10.19617 NA Intergenic Intergenic 65010 NM_001289109 79836 Hs.144266 NM_024778 HPRD:06708 LONRF3 RNF127 LON peptidase N-terminal domain and ring finger 3 protein-coding 13-PTNLD9-TUMOR_peak_712 chr1 24643727 24643833 + 10.19617 NA Intergenic Intergenic -2032 NM_198173 57822 Hs.657920 NM_021180 HPRD:12210 GRHL3 SOM|TFCP2L4|VWS2 grainyhead-like 3 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_46083 chr6 134381660 134381847 + 10.19617 NA Intergenic LTR67B|LTR|ERVL -7964 NM_145176 154091 Hs.486508 NM_145176 SLC2A12 GLUT12|GLUT8 solute carrier family 2 (facilitated glucose transporter), member 12 protein-coding 13-PTNLD9-TUMOR_peak_37467 chr3 197051698 197051873 + 10.19617 NA Intergenic Intergenic -25642 NM_001290983 1739 Hs.292549 NM_004087 HPRD:03007 DLG1 DLGH1|SAP-97|SAP97|dJ1061C18.1.1|hdlg discs, large homolog 1 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_40907 chr5 55566500 55566686 + 10.19617 NA Intergenic Intergenic -37407 NM_024669 79722 Hs.436214 NM_024669 HPRD:07758 ANKRD55 - ankyrin repeat domain 55 protein-coding 13-PTNLD9-TUMOR_peak_46255 chr6 148762829 148762999 + 10.19617 NA intron (NM_015278, intron 4 of 19) intron (NM_015278, intron 4 of 19) 99185 NM_015278 23328 Hs.193133 NM_015278 HPRD:06408 SASH1 SH3D6A|dJ323M4|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_41858 chr5 121465107 121465378 + 10.19617 NA promoter-TSS (NM_207317) promoter-TSS (NM_207317) 27 NM_207317 133923 Hs.729673 NM_207317 HPRD:13411 ZNF474 - zinc finger protein 474 protein-coding 13-PTNLD9-TUMOR_peak_35142 chr3 97406717 97406944 + 10.19617 NA intron (NM_001080448, intron 14 of 17) MLT1I|LTR|ERVL-MaLR -76535 NM_001278293 84100 Hs.373801 NM_032146 HPRD:10588 ARL6 BBS3|RP55 ADP-ribosylation factor-like 6 protein-coding 13-PTNLD9-TUMOR_peak_45493 chr6 73650127 73650263 + 10.19617 NA intron (NM_001160133, intron 1 of 14) intron (NM_001160133, intron 1 of 14) 27281 NR_036244 100423005 NR_036244 miRBase:MI0015890 MIR4282 - microRNA 4282 ncRNA 13-PTNLD9-TUMOR_peak_32414 chr21 43506487 43506619 + 10.19617 NA intron (NM_001004416, intron 4 of 22) intron (NM_001004416, intron 4 of 22) 15127 NM_173568 89766 Hs.242520 NM_173568 HPRD:08775 UMODL1 - uromodulin-like 1 protein-coding 13-PTNLD9-TUMOR_peak_6750 chr10 27208544 27208692 + 10.19617 NA Intergenic AluSg|SINE|Alu 22312 NR_026795 387644 Hs.529965 NR_026795 ENSG00000232224 LINC00202-1 C10orf51|LINC00202|NCRNA00202|bB27G4.1 long intergenic non-protein coding RNA 202-1 ncRNA 13-PTNLD9-TUMOR_peak_45938 chr6 115061849 115061966 + 10.19617 NA Intergenic Intergenic -677866 NM_153612 222537 Hs.645477 NM_153612 HPRD:13674 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate (glucosamine) 3-O-sulfotransferase 5 protein-coding 13-PTNLD9-TUMOR_peak_55651 chrX 23919219 23919395 + 10.19617 NA intron (NM_024122, intron 1 of 8) intron (NM_024122, intron 1 of 8) 6750 NR_026545 79135 Hs.495851 NM_024122 HPRD:06657 APOO FAM121B apolipoprotein O protein-coding 13-PTNLD9-TUMOR_peak_7999 chr10 92502067 92502196 + 10.19617 NA 3' UTR (NM_019859, exon 4 of 4) 3' UTR (NM_019859, exon 4 of 4) 115540 NM_000872 3363 Hs.73739 NM_000872 HPRD:01639 HTR7 5-HT7 5-hydroxytryptamine (serotonin) receptor 7, adenylate cyclase-coupled protein-coding 13-PTNLD9-TUMOR_peak_17436 chr15 64541761 64541886 + 10.19617 NA intron (NM_022048, intron 4 of 11) intron (NM_022048, intron 4 of 11) -86469 NM_000942 5479 Hs.434937 NM_000942 HPRD:00458 PPIB CYP-S1|CYPB|HEL-S-39|OI9|SCYLP peptidylprolyl isomerase B (cyclophilin B) protein-coding 13-PTNLD9-TUMOR_peak_23096 chr18 45557509 45557648 + 10.19617 NA intron (NM_001039360, intron 2 of 2) intron (NM_001039360, intron 2 of 2) -100061 NM_001003652 4087 Hs.12253 NM_005901 HPRD:03221 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding 13-PTNLD9-TUMOR_peak_50600 chr8 37022580 37022805 + 10.19617 NA Intergenic Intergenic 328739 NR_121620 100507420 Hs.105962 NR_121620 LOC100507420 - uncharacterized LOC100507420 ncRNA 13-PTNLD9-TUMOR_peak_12316 chr12 24649809 24650038 + 10.19617 NA intron (NM_152989, intron 1 of 17) intron (NM_152989, intron 1 of 17) 65460 NM_152989 6660 Hs.657542 NM_006940 HPRD:18086 SOX5 L-SOX5|L-SOX5B|L-SOX5F SRY (sex determining region Y)-box 5 protein-coding 13-PTNLD9-TUMOR_peak_35999 chr3 134010837 134011004 + 10.19617 NA Intergenic Intergenic -41334 NM_001005861 6259 Hs.654562 NM_002958 HPRD:02751 RYK D3S3195|JTK5|JTK5A|RYK1 receptor-like tyrosine kinase protein-coding 13-PTNLD9-TUMOR_peak_8948 chr11 7987019 7987207 + 10.19617 NA Intergenic Intergenic -2054 NM_176821 338322 Hs.449636 NM_176821 HPRD:14802 NLRP10 CLR11.1|NALP10|NOD8|PAN5|PYNOD NLR family, pyrin domain containing 10 protein-coding 13-PTNLD9-TUMOR_peak_37444 chr3 196552092 196552208 + 10.19617 NA intron (NM_002577, intron 13 of 14) AluSz|SINE|Alu -42577 NM_152699 205564 Hs.240770 NM_152699 HPRD:10222 SENP5 - SUMO1/sentrin specific peptidase 5 protein-coding 13-PTNLD9-TUMOR_peak_651 chr1 22927194 22927351 + 10.19617 NA exon (NM_020526, exon 14 of 17) exon (NM_020526, exon 14 of 17) 32587 NR_106742 102466615 NR_106742 MIR6127 hsa-mir-6127 microRNA 6127 ncRNA 13-PTNLD9-TUMOR_peak_2387 chr1 88793445 88793554 + 10.19617 NA Intergenic Intergenic -356423 NM_006256 5586 Hs.440833 NM_006256 HPRD:03972 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 13-PTNLD9-TUMOR_peak_45693 chr6 89440436 89440622 + 10.19617 NA intron (NM_001286426, intron 12 of 14) L1MCa|LINE|L1 -191441 NR_110867 101928936 Hs.533080 NR_110867 LOC101928936 - uncharacterized LOC101928936 ncRNA 13-PTNLD9-TUMOR_peak_28044 chr2 111574149 111574279 + 10.19617 NA intron (NM_001142807, intron 9 of 17) intron (NM_001142807, intron 9 of 17) 84064 NM_001142807 55289 Hs.253320 NM_018308 HPRD:12418 ACOXL - acyl-CoA oxidase-like protein-coding 13-PTNLD9-TUMOR_peak_604 chr1 20685201 20685447 + 10.19617 NA TTS (NR_033887) TTS (NR_033887) 67912 NM_001039500 127731 Hs.205178 NM_144623 HPRD:08732 VWA5B1 - von Willebrand factor A domain containing 5B1 protein-coding 13-PTNLD9-TUMOR_peak_15410 chr14 25476325 25476597 + 10.19617 NA intron (NM_014178, intron 1 of 5) intron (NM_014178, intron 1 of 5) 42634 NM_014178 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 amisyn syntaxin binding protein 6 (amisyn) protein-coding 13-PTNLD9-TUMOR_peak_52758 chr9 13721572 13721793 + 10.19617 NA Intergenic Intergenic -206288 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA 13-PTNLD9-TUMOR_peak_11289 chr11 114548935 114549204 + 10.19617 NA promoter-TSS (NM_182495) promoter-TSS (NM_182495) -131 NM_182495 120406 Hs.446760 NM_182495 HPRD:08055 NXPE2 FAM55B neurexophilin and PC-esterase domain family, member 2 protein-coding 13-PTNLD9-TUMOR_peak_34148 chr3 29106951 29107247 + 10.19617 NA Intergenic Intergenic 215331 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 13-PTNLD9-TUMOR_peak_27548 chr2 88909046 88909158 + 10.19617 NA intron (NM_004836, intron 2 of 16) Charlie1a|DNA|hAT-Charlie 17992 NM_004836 9451 Hs.591589 NM_004836 HPRD:04942 EIF2AK3 PEK|PERK|WRS eukaryotic translation initiation factor 2-alpha kinase 3 protein-coding 13-PTNLD9-TUMOR_peak_34706 chr3 54916636 54916755 + 10.19617 NA intron (NM_018398, intron 21 of 37) intron (NM_018398, intron 21 of 37) 18587 NR_046666 100874237 Hs.570583 NR_046666 ENSG00000243715 CACNA2D3-AS1 - CACNA2D3 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_50053 chr8 9045591 9045824 + 10.19617 NA promoter-TSS (NR_125431) promoter-TSS (NR_125431) -802 NR_125431 101929128 NR_125431 LOC101929128 - uncharacterized LOC101929128 ncRNA 13-PTNLD9-TUMOR_peak_27249 chr2 71977056 71977244 + 10.19617 NA Intergenic Intergenic 283318 NM_001130987 8291 Hs.252180 NM_003494 HPRD:04307 DYSF FER1L1|LGMD2B|MMD1 dysferlin protein-coding 13-PTNLD9-TUMOR_peak_26507 chr2 31520660 31520933 + 10.19617 NA Intergenic MIRc|SINE|MIR 63916 NM_014600 30845 Hs.368808 NM_014600 EHD3 PAST3 EH-domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_1221 chr1 38964496 38964602 + 10.19617 NA Intergenic Intergenic -284110 NR_038928 339442 Hs.434245 NR_038928 ENSG00000237290 LINC01343 - long intergenic non-protein coding RNA 1343 ncRNA 13-PTNLD9-TUMOR_peak_39500 chr4 142774484 142774860 + 10.19617 NA Intergenic MER68|LTR|ERVL 216923 NM_000585 3600 Hs.168132 NM_000585 HPRD:02776 IL15 IL-15 interleukin 15 protein-coding 13-PTNLD9-TUMOR_peak_41315 chr5 74952618 74952776 + 10.19617 NA intron (NM_001276713, intron 9 of 13) intron (NM_001276713, intron 9 of 13) 45396 NM_001276713 728780 Hs.370455 NM_001271529 ENSG00000189045 ANKDD1B - ankyrin repeat and death domain containing 1B protein-coding 13-PTNLD9-TUMOR_peak_7864 chr10 81248167 81248292 + 10.19617 NA Intergenic Intergenic -24128 NM_001099692 143244 Hs.104825 NM_001099692 ENSG00000253626 EIF5AL1 EIF5AP1|bA342M3.3 eukaryotic translation initiation factor 5A-like 1 protein-coding 13-PTNLD9-TUMOR_peak_52052 chr8 130548196 130548342 + 10.19617 NA Intergenic Intergenic 250865 NM_031415 56169 Hs.133244 NM_031415 HPRD:12222 GSDMC MLZE gasdermin C protein-coding 13-PTNLD9-TUMOR_peak_6336 chr10 4558055 4558300 + 10.19617 NA Intergenic L2a|LINE|L2 109516 NR_108056 100507059 Hs.158438 NR_108054 LINC00703 - long intergenic non-protein coding RNA 703 ncRNA 13-PTNLD9-TUMOR_peak_39057 chr4 110085308 110085436 + 10.19617 NA intron (NM_198721, intron 3 of 36) MLT1J2|LTR|ERVL-MaLR 138151 NM_001256074 84570 Hs.658842 NM_032518 HPRD:09886 COL25A1 AMY|CLAC|CLAC-P|CLACP collagen, type XXV, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_33164 chr22 33513003 33513209 + 10.19617 NA Intergenic LTR33B|LTR|ERVL -58729 NM_001135774 8224 Hs.608750 NM_003490 HPRD:04083 SYN3 - synapsin III protein-coding 13-PTNLD9-TUMOR_peak_19720 chr16 71403442 71403764 + 10.19617 NA intron (NR_027910, intron 1 of 9) intron (NR_027910, intron 1 of 9) 10987 NM_007088 794 Hs.106857 NM_001740 HPRD:00230 CALB2 CAB29|CAL2|CR calbindin 2 protein-coding 13-PTNLD9-TUMOR_peak_26710 chr2 43278667 43278782 + 10.19617 NA Intergenic MIR|SINE|MIR -12042 NR_110585 102723854 Hs.570165 NR_110585 LOC102723854 - uncharacterized LOC102723854 ncRNA 13-PTNLD9-TUMOR_peak_11791 chr12 1123402 1123512 + 10.19617 NA intron (NR_027948, intron 1 of 19) AluSx|SINE|Alu -13457 NM_001301248 23085 Hs.601216 NM_178039 HPRD:06181 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 13-PTNLD9-TUMOR_peak_54472 chr9 115526712 115526980 + 10.19617 NA intron (NM_001012994, intron 1 of 8) intron (NM_001012994, intron 1 of 8) 13712 NM_001012994 401548 Hs.522350 NM_001012994 ENSG00000148158 SNX30 ATG24A sorting nexin family member 30 protein-coding 13-PTNLD9-TUMOR_peak_15878 chr14 58181309 58181480 + 10.19617 NA intron (NM_001206920, intron 1 of 7) L2c|LINE|L2 151198 NM_001206920 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35, member F4 protein-coding 13-PTNLD9-TUMOR_peak_47485 chr7 50937167 50937298 + 10.19617 NA Intergenic Intergenic -76073 NM_001001555 2887 Hs.164060 NM_005311 HPRD:03312 GRB10 GRB-IR|Grb-10|IRBP|MEG1|RSS growth factor receptor-bound protein 10 protein-coding 13-PTNLD9-TUMOR_peak_26861 chr2 47476676 47476874 + 10.19617 NA intron (NR_110207, intron 1 of 2) intron (NR_110207, intron 1 of 2) -73035 NM_001743 805 Hs.468442 NM_001743 HPRD:00242 CALM2 CAMII|PHKD|PHKD2 calmodulin 2 (phosphorylase kinase, delta) protein-coding 13-PTNLD9-TUMOR_peak_35005 chr3 75063275 75063413 + 10.19617 NA Intergenic MLT1E1|LTR|ERVL-MaLR -200283 NR_049831 100846999 NR_049831 MIR4444-2 - microRNA 4444-2 ncRNA 13-PTNLD9-TUMOR_peak_18003 chr15 92661830 92661979 + 10.19617 NA intron (NM_013272, intron 4 of 9) intron (NM_013272, intron 4 of 9) 264966 NM_013272 28232 Hs.311187 NM_013272 HPRD:07502 SLCO3A1 OATP-D|OATP3A1|OATPD|SLC21A11 solute carrier organic anion transporter family, member 3A1 protein-coding 13-PTNLD9-TUMOR_peak_17334 chr15 57098122 57098233 + 10.19617 NA Intergenic MER44C|DNA|TcMar-Tigger -71893 NM_001288589 54816 Hs.511477 NM_017661 HPRD:15448 ZNF280D SUHW4|ZNF634 zinc finger protein 280D protein-coding 13-PTNLD9-TUMOR_peak_54596 chr9 119632917 119633230 + 10.19617 NA intron (NM_014010, intron 9 of 21) intron (NM_014010, intron 9 of 21) 183492 NM_012210 22954 Hs.591910 NM_012210 HPRD:03797 TRIM32 BBS11|HT2A|LGMD2H|TATIP tripartite motif containing 32 protein-coding 13-PTNLD9-TUMOR_peak_38278 chr4 48221392 48221519 + 10.19617 NA intron (NM_003215, intron 2 of 17) LTR13A|LTR|ERVK 50359 NM_003215 7006 Hs.479670 NM_003215 HPRD:02786 TEC PSCTK4 tec protein tyrosine kinase protein-coding 13-PTNLD9-TUMOR_peak_11927 chr12 5926543 5926665 + 10.19617 NA intron (NM_001278596, intron 7 of 25) intron (NM_001278596, intron 7 of 25) 127821 NM_001278596 57101 Hs.148970 NM_020373 HPRD:11634 ANO2 C12orf3|TMEM16B anoctamin 2, calcium activated chloride channel protein-coding 13-PTNLD9-TUMOR_peak_30207 chr2 242479952 242480178 + 10.19617 NA Intergenic Intergenic -18081 NM_032515 666 Hs.293753 NM_032515 HPRD:05657 BOK BCL2L9|BOKL BCL2-related ovarian killer protein-coding 13-PTNLD9-TUMOR_peak_16551 chr14 99423598 99423786 + 10.19617 NA Intergenic Intergenic 245742 NM_182560 283598 Hs.448754 NM_182560 HPRD:08075 C14orf177 - chromosome 14 open reading frame 177 protein-coding 13-PTNLD9-TUMOR_peak_29869 chr2 220227324 220227499 + 10.19617 NA Intergenic MLT1F|LTR|ERVL-MaLR 25251 NM_012100 23549 Hs.258551 NM_012100 HPRD:09924 DNPEP ASPEP|DAP aspartyl aminopeptidase protein-coding 13-PTNLD9-TUMOR_peak_306 chr1 9002025 9002135 + 10.19617 NA Intergenic Intergenic -3813 NM_001270500 765 Hs.100322 NM_001215 HPRD:00264 CA6 CA-VI|GUSTIN carbonic anhydrase VI protein-coding 13-PTNLD9-TUMOR_peak_7324 chr10 50029837 50030074 + 10.19617 NA intron (NM_020945, intron 34 of 61) MIRb|SINE|MIR 92325 NM_001006939 474354 Hs.202438 NM_001006939 HPRD:17450 LRRC18 UNQ933|UNQ9338|VKGE9338 leucine rich repeat containing 18 protein-coding 13-PTNLD9-TUMOR_peak_30376 chr20 8395631 8395755 + 10.19617 NA intron (NM_015192, intron 3 of 31) intron (NM_015192, intron 3 of 31) 282781 NM_015192 23236 Hs.431173 NM_015192 HPRD:06177 PLCB1 EIEE12|PI-PLC|PLC-154|PLC-I|PLC154|PLCB1A|PLCB1B phospholipase C, beta 1 (phosphoinositide-specific) protein-coding 13-PTNLD9-TUMOR_peak_34277 chr3 38289035 38289189 + 10.19617 NA intron (NM_005109, intron 13 of 17) intron (NM_005109, intron 13 of 17) -18186 NM_004256 9390 Hs.225941 NM_004256 HPRD:06810 SLC22A13 OAT10|OCTL1|OCTL3|ORCTL-3|ORCTL3 solute carrier family 22 (organic anion/urate transporter), member 13 protein-coding 13-PTNLD9-TUMOR_peak_34175 chr3 30811994 30812158 + 10.19617 NA intron (NM_207359, intron 14 of 14) intron (NM_207359, intron 14 of 14) 124077 NM_207359 339896 Hs.657052 NM_207359 HPRD:13557 GADL1 ADC|CSADC|HuADC|HuCSADC glutamate decarboxylase-like 1 protein-coding 13-PTNLD9-TUMOR_peak_48753 chr7 106183056 106183331 + 10.19617 NA Intergenic Intergenic 118441 NM_175884 168455 Hs.29692 NM_175884 HPRD:08202 CCDC71L C7orf74 coiled-coil domain containing 71-like protein-coding 13-PTNLD9-TUMOR_peak_2437 chr1 90852413 90852638 + 10.19617 NA Intergenic Intergenic 330269 NM_020063 343472 Hs.451956 NM_020063 BARHL2 - BarH-like homeobox 2 protein-coding 13-PTNLD9-TUMOR_peak_29638 chr2 206599275 206599403 + 10.19617 NA intron (NM_003872, intron 7 of 16) intron (NM_003872, intron 7 of 16) 52115 NM_201264 8828 Hs.471200 NM_003872 HPRD:03643 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 13-PTNLD9-TUMOR_peak_8258 chr10 105287283 105287451 + 10.19617 NA intron (NM_004210, intron 1 of 5) MER41B|LTR|ERV1 -10168 NR_120675 102724341 Hs.599425 NR_120675 NEURL1-AS1 - NEURL1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_12310 chr12 23882382 23882582 + 10.19617 NA intron (NM_006940, intron 6 of 14) intron (NM_006940, intron 6 of 14) -144936 NM_178010 6660 Hs.657542 NM_006940 HPRD:18086 SOX5 L-SOX5|L-SOX5B|L-SOX5F SRY (sex determining region Y)-box 5 protein-coding 13-PTNLD9-TUMOR_peak_12217 chr12 14219024 14219220 + 10.19617 NA Intergenic Intergenic -86100 NM_000834 2904 Hs.654430 NM_000834 GRIN2B GluN2B|MRD6|NMDAR2B|NR2B|hNR3 glutamate receptor, ionotropic, N-methyl D-aspartate 2B protein-coding 13-PTNLD9-TUMOR_peak_40356 chr5 13810185 13810344 + 10.19617 NA exon (NM_001369, exon 45 of 79) exon (NM_001369, exon 45 of 79) 134325 NM_001369 1767 Hs.212360 NM_001369 HPRD:04514 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein, axonemal, heavy chain 5 protein-coding 13-PTNLD9-TUMOR_peak_30548 chr20 19512110 19512437 + 10.19617 NA intron (NM_020689, intron 3 of 16) intron (NM_020689, intron 3 of 16) -247033 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 13-PTNLD9-TUMOR_peak_1350 chr1 41807838 41807980 + 10.19617 NA Intergenic Intergenic -19694 NM_001291281 100132074 Hs.559677 NM_001291281 ENSG00000204060 FOXO6 - forkhead box O6 protein-coding 13-PTNLD9-TUMOR_peak_43783 chr6 11575882 11576081 + 10.19617 NA 3' UTR (NM_001100829, exon 3 of 3) 3' UTR (NM_001100829, exon 3 of 3) 37521 NM_001100829 100113407 Hs.146317 NM_001100829 ENSG00000205269 TMEM170B - transmembrane protein 170B protein-coding 13-PTNLD9-TUMOR_peak_1505 chr1 44345145 44345331 + 10.19617 NA intron (NR_073018, intron 6 of 10) L2a|LINE|L2 40944 NR_106727 102464830 NR_106727 MIR6079 hsa-mir-6079 microRNA 6079 ncRNA 13-PTNLD9-TUMOR_peak_31172 chr20 43895785 43895890 + 10.19617 NA Intergenic Intergenic -12632 NM_003064 6590 Hs.517070 NM_003064 HPRD:00121 SLPI ALK1|ALP|BLPI|HUSI|HUSI-I|MPI|WAP4|WFDC4 secretory leukocyte peptidase inhibitor protein-coding 13-PTNLD9-TUMOR_peak_33161 chr22 33420785 33420989 + 10.19617 NA intron (NM_001135774, intron 1 of 13) MER65D|LTR|ERV1 -18081 NM_003490 8224 Hs.608750 NM_003490 HPRD:04083 SYN3 - synapsin III protein-coding 13-PTNLD9-TUMOR_peak_29770 chr2 216197745 216197912 + 10.19617 NA intron (NM_004044, intron 8 of 15) intron (NM_004044, intron 8 of 15) 21149 NM_004044 471 Hs.90280 NM_004044 HPRD:03434 ATIC AICAR|AICARFT|HEL-S-70p|IMPCHASE|PURH 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase protein-coding 13-PTNLD9-TUMOR_peak_50046 chr8 8522082 8522356 + 10.19617 NA Intergenic L2b|LINE|L2 -37447 NM_194284 137075 Hs.183617 NM_194284 HPRD:13069 CLDN23 CLDNL|hCG1646163 claudin 23 protein-coding 13-PTNLD9-TUMOR_peak_45824 chr6 106533992 106534355 + 10.19617 NA promoter-TSS (NM_001198) promoter-TSS (NM_001198) -22 NM_001198 639 Hs.436023 NM_001198 HPRD:04572 PRDM1 BLIMP1|PRDI-BF1 PR domain containing 1, with ZNF domain protein-coding 13-PTNLD9-TUMOR_peak_19527 chr16 66442695 66442909 + 10.19617 NA intron (NR_046242, intron 1 of 1) MER81|DNA|hAT-Blackjack 375 NR_046242 100505865 Hs.314372 NR_046242 LINC00920 - long intergenic non-protein coding RNA 920 ncRNA 13-PTNLD9-TUMOR_peak_28381 chr2 128334032 128334176 + 10.19617 NA intron (NM_001080527, intron 7 of 46) intron (NM_001080527, intron 7 of 46) 40726 NM_001080527 4648 Hs.154578 NM_001080527 ENSG00000169994 MYO7B - myosin VIIB protein-coding 13-PTNLD9-TUMOR_peak_30874 chr20 33999766 33999911 + 10.19617 NA 5' UTR (NM_001184977, exon 1 of 8) 5' UTR (NM_001184977, exon 1 of 8) 107 NM_018244 55245 Hs.726290 NM_018244 HPRD:12770 UQCC1 BFZB|C20orf44|CBP3|UQCC ubiquinol-cytochrome c reductase complex assembly factor 1 protein-coding 13-PTNLD9-TUMOR_peak_8082 chr10 98100191 98100289 + 10.19617 NA Intergenic Intergenic 16676 NM_001284323 93377 Hs.12449 NM_033207 HPRD:15521 OPALIN HTMP10|TMEM10|TMP10 oligodendrocytic myelin paranodal and inner loop protein protein-coding 13-PTNLD9-TUMOR_peak_644 chr1 22612113 22612505 + 10.19617 NA Intergenic CpG -142790 NM_030761 54361 Hs.25766 NM_030761 HPRD:04601 WNT4 SERKAL|WNT-4 wingless-type MMTV integration site family, member 4 protein-coding 13-PTNLD9-TUMOR_peak_6509 chr10 13188559 13188724 + 10.19617 NA Intergenic MLT1A|LTR|ERVL-MaLR -14913 NM_018518 55388 Hs.198363 NM_018518 HPRD:11297 MCM10 CNA43|DNA43 minichromosome maintenance complex component 10 protein-coding 13-PTNLD9-TUMOR_peak_8617 chr10 130846842 130847185 + 10.19617 NA Intergenic Intergenic -418441 NM_002412 4255 Hs.501522 NM_002412 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 13-PTNLD9-TUMOR_peak_52134 chr8 133430482 133430675 + 10.19617 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) 28931 NM_001204824 3786 Hs.374023 NM_004519 HPRD:09077 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel, KQT-like subfamily, member 3 protein-coding 13-PTNLD9-TUMOR_peak_10747 chr11 78729607 78729824 + 10.19617 NA intron (NM_001098816, intron 6 of 33) intron (NM_001098816, intron 6 of 33) 383438 NR_030598 100126333 NR_030598 miRBase:MI0005543 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 13-PTNLD9-TUMOR_peak_23240 chr18 53791617 53791768 + 10.19617 NA intron (NR_040026, intron 1 of 8) intron (NR_040026, intron 1 of 8) 13075 NR_040026 100505474 Hs.662191 NR_040025 ENSG00000267712 LOC100505474 - uncharacterized LOC100505474 ncRNA 13-PTNLD9-TUMOR_peak_39664 chr4 153600958 153601193 + 10.19617 NA exon (NM_152680, exon 1 of 7) exon (NM_152680, exon 1 of 7) 242 NM_152680 201799 Hs.518900 NM_152680 TMEM154 - transmembrane protein 154 protein-coding 13-PTNLD9-TUMOR_peak_12845 chr12 52938305 52938526 + 10.19617 NA exon (NM_033448, exon 9 of 9) exon (NM_033448, exon 9 of 9) 8516 NM_033448 112802 Hs.660007 NM_033448 HPRD:09745 KRT71 HYPT13|K6IRS1|KRT6IRS|KRT6IRS1 keratin 71 protein-coding 13-PTNLD9-TUMOR_peak_30383 chr20 9100486 9100714 + 10.19617 NA intron (NM_001172646, intron 1 of 37) intron (NM_001172646, intron 1 of 37) 50899 NM_001172646 5332 Hs.472101 NM_000933 HPRD:02885 PLCB4 ARCND2|PI-PLC phospholipase C, beta 4 protein-coding 13-PTNLD9-TUMOR_peak_40031 chr4 186495071 186495277 + 10.19617 NA Intergenic Intergenic -38462 NR_047562 27295 Hs.701364 NM_014476 PDLIM3 ALP PDZ and LIM domain 3 protein-coding 13-PTNLD9-TUMOR_peak_47803 chr7 69558626 69558737 + 10.19617 NA intron (NM_001127231, intron 2 of 17) intron (NM_001127231, intron 2 of 17) 494776 NM_001127231 26053 Hs.21631 NM_015570 HPRD:06276 AUTS2 FBRSL2|MRD26 autism susceptibility candidate 2 protein-coding 13-PTNLD9-TUMOR_peak_55740 chrX 40869385 40869671 + 10.19617 NA Intergenic LTR33C|LTR|ERVL -75360 NM_001039590 8239 Hs.77578 NM_004652 HPRD:02091 USP9X DFFRX|FAF|FAM|MRX99 ubiquitin specific peptidase 9, X-linked protein-coding 13-PTNLD9-TUMOR_peak_34318 chr3 40634971 40635092 + 10.19617 NA Intergenic Intergenic 68662 NM_001098414 285268 Hs.19977 NM_198484 ZNF621 - zinc finger protein 621 protein-coding 13-PTNLD9-TUMOR_peak_32583 chr21 46867820 46868006 + 10.19617 NA intron (NM_130445, intron 2 of 42) intron (NM_130445, intron 2 of 42) -7511 NM_030582 80781 Hs.517356 NM_030582 HPRD:00382 COL18A1 KNO|KNO1|KS collagen, type XVIII, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_6823 chr10 30357872 30358056 + 10.19617 NA Intergenic MER74B|LTR|ERVL -9476 NM_020848 57608 Hs.533953 NM_020848 ENSG00000165757 KIAA1462 JCAD KIAA1462 protein-coding 13-PTNLD9-TUMOR_peak_36793 chr3 176634754 176634977 + 10.19617 NA Intergenic MER31B|LTR|ERV1 -100076 NR_110819 101928684 Hs.639352 NR_110819 ENSG00000228308 LINC01209 - long intergenic non-protein coding RNA 1209 ncRNA 13-PTNLD9-TUMOR_peak_14808 chr13 53405199 53405365 + 10.19617 NA Intergenic Charlie1a|DNA|hAT-Charlie 17493 NM_032949 5100 Hs.19492 NM_002590 HPRD:04660 PCDH8 ARCADLIN|PAPC protocadherin 8 protein-coding 13-PTNLD9-TUMOR_peak_5783 chr1 230182921 230183086 + 10.19617 NA Intergenic MSTB1|LTR|ERVL-MaLR -10533 NM_001291866 2590 Hs.743964 NM_004481 HPRD:03782 GALNT2 GalNAc-T2 polypeptide N-acetylgalactosaminyltransferase 2 protein-coding 13-PTNLD9-TUMOR_peak_13201 chr12 66388202 66388340 + 10.19617 NA Intergenic Tigger2a|DNA|TcMar-Tigger 29235 NR_106722 102464827 NR_106722 MIR6074 hsa-mir-6074 microRNA 6074 ncRNA 13-PTNLD9-TUMOR_peak_41264 chr5 73234495 73234696 + 10.19617 NA intron (NM_001080479, intron 36 of 36) intron (NM_001080479, intron 36 of 36) 125252 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor (GEF) 28 protein-coding 13-PTNLD9-TUMOR_peak_9302 chr11 20253144 20253303 + 10.19617 NA Intergenic L1MB4|LINE|L1 -71353 NM_001029865 120237 Hs.558604 NM_001029865 HPRD:18721 DBX1 - developing brain homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_26544 chr2 34073680 34073918 + 10.19617 NA Intergenic MER4B-int|LTR|ERV1 -120515 NR_003143 151325 Hs.528847 NM_207329 HPRD:14793 MYADML - myeloid-associated differentiation marker-like (pseudogene) pseudo 13-PTNLD9-TUMOR_peak_51006 chr8 58991576 58991786 + 10.19617 NA intron (NM_147189, intron 4 of 4) intron (NM_147189, intron 4 of 4) 84568 NM_147189 90362 Hs.154652 NM_147189 HPRD:14609 FAM110B C8orf72 family with sequence similarity 110, member B protein-coding 13-PTNLD9-TUMOR_peak_39108 chr4 113778728 113778887 + 10.19617 NA intron (NM_001127493, intron 1 of 46) intron (NM_001127493, intron 1 of 46) 39568 NM_001127493 287 Hs.620557 NM_001148 HPRD:00110 ANK2 ANK-2|LQT4|brank-2 ankyrin 2, neuronal protein-coding 13-PTNLD9-TUMOR_peak_55797 chrX 47400664 47400810 + 10.19617 NA Intergenic Intergenic -19762 NM_001654 369 Hs.446641 NM_001654 HPRD:02405 ARAF A-RAF|ARAF1|PKS2|RAFA1 A-Raf proto-oncogene, serine/threonine kinase protein-coding 13-PTNLD9-TUMOR_peak_10631 chr11 74494562 74494758 + 10.19617 NA intron (NM_001098638, intron 1 of 5) intron (NM_001098638, intron 1 of 5) 34747 NM_001098638 254225 Hs.370145 NM_001098638 ENSG00000166439 RNF169 - ring finger protein 169 protein-coding 13-PTNLD9-TUMOR_peak_11879 chr12 4593740 4593877 + 10.19617 NA Intergenic MIR|SINE|MIR -39028 NM_020996 2251 Hs.166015 NM_020996 HPRD:00623 FGF6 HBGF-6|HST2 fibroblast growth factor 6 protein-coding 13-PTNLD9-TUMOR_peak_16714 chr14 107183278 107183397 + 10.19617 NA Intergenic Intergenic 244892 NR_027457 338005 Hs.322826 NR_027457 ENSG00000187156 LINC00221 C14orf98|NCRNA00221 long intergenic non-protein coding RNA 221 ncRNA 13-PTNLD9-TUMOR_peak_2149 chr1 68345924 68346199 + 10.19617 NA intron (NR_040077, intron 1 of 9) intron (NR_040077, intron 1 of 9) -46906 NM_018841 55970 Hs.431101 NM_018841 HPRD:13592 GNG12 - guanine nucleotide binding protein (G protein), gamma 12 protein-coding 13-PTNLD9-TUMOR_peak_13489 chr12 94179143 94179249 + 10.19617 NA intron (NM_003805, intron 2 of 2) intron (NM_003805, intron 2 of 2) -47597 NR_110092 101928731 Hs.659971 NR_110092 LOC101928731 - uncharacterized LOC101928731 ncRNA 13-PTNLD9-TUMOR_peak_33165 chr22 34249897 34250025 + 10.19617 NA intron (NM_133642, intron 1 of 14) intron (NM_133642, intron 1 of 14) 66455 NM_133642 9215 Hs.474667 NM_004737 HPRD:04665 LARGE MDC1D|MDDGA6|MDDGB6 like-glycosyltransferase protein-coding 13-PTNLD9-TUMOR_peak_14646 chr13 41568261 41568415 + 10.19617 NA intron (NM_172373, intron 1 of 8) intron (NM_172373, intron 1 of 8) -11920 NM_001145353 1997 Hs.135646 NM_172373 HPRD:01808 ELF1 - E74-like factor 1 (ets domain transcription factor) protein-coding 13-PTNLD9-TUMOR_peak_17699 chr15 76094481 76094666 + 10.19617 NA Intergenic Intergenic -39917 NR_036198 100423035 NR_036198 miRBase:MI0015843 MIR4313 - microRNA 4313 ncRNA 13-PTNLD9-TUMOR_peak_38508 chr4 60770213 60770339 + 10.19617 NA Intergenic ERVL-B4-int|LTR|ERVL -1592563 NM_015236 23284 Hs.28391 NM_015236 HPRD:10055 LPHN3 CIRL3|LEC3 latrophilin 3 protein-coding 13-PTNLD9-TUMOR_peak_17568 chr15 70667450 70667698 + 10.19617 NA Intergenic Intergenic -277318 NM_001105192 7090 Hs.287362 NM_005078 HPRD:02558 TLE3 ESG|ESG3|GRG3|HsT18976 transducin-like enhancer of split 3 protein-coding 13-PTNLD9-TUMOR_peak_18119 chr15 102251157 102251268 + 10.19617 NA intron (NM_152334, intron 5 of 18) intron (NM_152334, intron 5 of 18) 13433 NM_152334 123283 Hs.657163 NM_152334 HPRD:15469 TARSL2 - threonyl-tRNA synthetase-like 2 protein-coding 13-PTNLD9-TUMOR_peak_8406 chr10 118468005 118468169 + 10.19617 NA intron (NM_025015, intron 1 of 11) intron (NM_025015, intron 1 of 11) 33998 NM_025015 259217 Hs.648448 NM_025015 ENSG00000165868 HSPA12A - heat shock 70kDa protein 12A protein-coding 13-PTNLD9-TUMOR_peak_19490 chr16 58695196 58695387 + 10.19617 NA Intergenic Intergenic 23383 NM_018231 55238 Hs.10499 NM_018231 SLC38A7 SNAT7 solute carrier family 38, member 7 protein-coding 13-PTNLD9-TUMOR_peak_14845 chr13 72865479 72865707 + 10.19617 NA Intergenic Intergenic -424263 NM_004392 1602 Hs.129452 NM_004392 HPRD:16031 DACH1 DACH dachshund family transcription factor 1 protein-coding 13-PTNLD9-TUMOR_peak_16635 chr14 103664986 103665324 + 10.19617 NA Intergenic MER4D|LTR|ERV1 -9790 NR_033938 100131366 Hs.147881 NR_033938 ENSG00000251533 LINC00605 - long intergenic non-protein coding RNA 605 ncRNA 13-PTNLD9-TUMOR_peak_41765 chr5 112540303 112540444 + 10.19617 NA intron (NM_001085377, intron 3 of 18) intron (NM_001085377, intron 3 of 18) 90239 NM_002387 4163 Hs.593171 NM_002387 HPRD:01157 MCC MCC1 mutated in colorectal cancers protein-coding 13-PTNLD9-TUMOR_peak_50023 chr8 7940573 7940700 + 10.19617 NA Intergenic Intergenic 5975 NR_031689 100302186 NR_031689 miRBase:MI0006423 MIR548I3 MIR548I-3|MIRN548I3|hsa-mir-548i-3 microRNA 548i-3 ncRNA 13-PTNLD9-TUMOR_peak_27840 chr2 101520412 101520589 + 10.19617 NA intron (NM_002518, intron 1 of 20) intron (NM_002518, intron 1 of 20) 73123 NR_110213 101927142 Hs.656556 NR_110213 LOC101927142 - uncharacterized LOC101927142 ncRNA 13-PTNLD9-TUMOR_peak_52774 chr9 14372956 14373191 + 10.19617 NA intron (NM_001190738, intron 1 of 8) intron (NM_001190738, intron 1 of 8) 25909 NM_001190738 4781 Hs.644095 NM_005596 HPRD:09008 NFIB CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I/B protein-coding 13-PTNLD9-TUMOR_peak_13401 chr12 79948901 79949045 + 10.19617 NA Intergenic Intergenic 98322 NR_049889 100847013 NR_049889 MIR5692B - microRNA 5692b ncRNA 13-PTNLD9-TUMOR_peak_17729 chr15 78357836 78357999 + 10.19617 NA intron (NM_144572, intron 1 of 12) intron (NM_144572, intron 1 of 12) 12077 NM_144572 23102 Hs.567426 NM_015079 HPRD:08310 TBC1D2B - TBC1 domain family, member 2B protein-coding 13-PTNLD9-TUMOR_peak_24605 chr19 28780625 28780812 + 10.19617 NA Intergenic Intergenic 437883 NR_110759 100420587 Hs.569956 NR_110759 LOC100420587 - SHC SH2-domain binding protein 1 pseudogene pseudo 13-PTNLD9-TUMOR_peak_6498 chr10 12442343 12442482 + 10.19617 NA intron (NM_020397, intron 1 of 9) intron (NM_020397, intron 1 of 9) 50829 NM_153498 57118 Hs.659517 NM_020397 HPRD:06409 CAMK1D CKLiK|CaM-K1|CaMKID calcium/calmodulin-dependent protein kinase ID protein-coding 13-PTNLD9-TUMOR_peak_50329 chr8 23034684 23034806 + 10.19617 NA Intergenic Intergenic -13202 NM_003840 8793 Hs.213467 NM_003840 HPRD:04682 TNFRSF10D CD264|DCR2|TRAIL-R4|TRAILR4|TRUNDD tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain protein-coding 13-PTNLD9-TUMOR_peak_19744 chr16 73983639 73983762 + 10.19617 NA Intergenic Intergenic 265720 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 13-PTNLD9-TUMOR_peak_13473 chr12 92555065 92555214 + 10.19617 NA Intergenic L2a|LINE|L2 -15466 NM_001731 694 Hs.255935 NM_001731 BTG1 - B-cell translocation gene 1, anti-proliferative protein-coding 13-PTNLD9-TUMOR_peak_14810 chr13 53542344 53542479 + 10.19617 NA Intergenic Intergenic -60465 NM_006418 10562 Hs.508113 NM_006418 HPRD:06580 OLFM4 GC1|GW112|OLM4|OlfD|UNQ362|bA209J19.1|hGC-1|hOLfD olfactomedin 4 protein-coding 13-PTNLD9-TUMOR_peak_55515 chrX 9531003 9531172 + 10.19617 NA intron (NM_001139468, intron 3 of 17) intron (NM_001139468, intron 3 of 17) 97886 NM_005647 6907 Hs.495656 NM_005647 HPRD:02183 TBL1X EBI|SMAP55|TBL1 transducin (beta)-like 1X-linked protein-coding 13-PTNLD9-TUMOR_peak_41240 chr5 72497804 72498008 + 10.19617 NA Intergenic Intergenic 28883 NM_153217 134288 Hs.508588 NM_153217 HPRD:14432 TMEM174 - transmembrane protein 174 protein-coding 13-PTNLD9-TUMOR_peak_38997 chr4 104020994 104021154 + 10.19617 NA promoter-TSS (NM_020139) promoter-TSS (NM_020139) -50 NM_020139 56898 Hs.124696 NM_020139 BDH2 DHRS6|EFA6R|PRO20933|SDR15C1|UCPA-OR|UNQ6308 3-hydroxybutyrate dehydrogenase, type 2 protein-coding 13-PTNLD9-TUMOR_peak_45253 chr6 47755933 47756087 + 10.19617 NA intron (NR_033806, intron 1 of 6) intron (NR_033806, intron 1 of 6) 1206 NR_033806 221391 Hs.213717 NM_181744 OPN5 GPR136|GRP136|PGR12|TMEM13 opsin 5 protein-coding 13-PTNLD9-TUMOR_peak_22876 chr18 29302471 29302578 + 10.19617 NA Intergenic Intergenic -37838 NM_004775 9331 Hs.591063 NM_004775 HPRD:06808 B4GALT6 B4Gal-T6|beta4Gal-T6 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 6 protein-coding 13-PTNLD9-TUMOR_peak_37241 chr3 191778189 191778477 + 10.19617 NA Intergenic Intergenic -178086 NR_046596 100873986 Hs.581652 NR_046596 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_52922 chr9 22238059 22238173 + 10.19617 NA Intergenic Intergenic -208724 NM_022160 63951 Hs.371976 NM_022160 DMRTA1 DMO|DMRT4 DMRT-like family A1 protein-coding 13-PTNLD9-TUMOR_peak_9879 chr11 57169771 57169930 + 10.19617 NA Intergenic Intergenic -11720 NM_001243245 5553 Hs.512633 NM_002728 PRG2 BMPG|MBP|MBP1 proteoglycan 2, bone marrow (natural killer cell activator, eosinophil granule major basic protein) protein-coding 13-PTNLD9-TUMOR_peak_15612 chr14 40633313 40633420 + 10.19617 NA Intergenic LTR22C|LTR|ERVK -731662 NM_203301 254170 Hs.146632 NM_203301 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 13-PTNLD9-TUMOR_peak_10451 chr11 69361392 69361572 + 10.19617 NA Intergenic L1MB5|LINE|L1 61153 NR_120545 101928292 Hs.736219 NR_120542 LINC01488 - long intergenic non-protein coding RNA 1488 ncRNA 13-PTNLD9-TUMOR_peak_24717 chr19 34783571 34783699 + 10.19617 NA intron (NM_014686, intron 1 of 13) AluSx|SINE|Alu 38179 NM_014686 9710 Hs.330073 NM_014686 HPRD:11077 KIAA0355 - KIAA0355 protein-coding 13-PTNLD9-TUMOR_peak_29989 chr2 231639360 231639561 + 10.19617 NA intron (NM_016289, intron 2 of 8) intron (NM_016289, intron 2 of 8) 61197 NM_001130849 51719 Hs.603930 NM_016289 HPRD:10091 CAB39 MO25 calcium binding protein 39 protein-coding 13-PTNLD9-TUMOR_peak_45533 chr6 76234146 76234353 + 10.19617 NA Intergenic Intergenic -30704 NM_001300866 27145 Hs.696158 NM_015687 HPRD:09533 FILIP1 FILIP filamin A interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_46367 chr6 155347738 155347893 + 10.19617 NA Intergenic Intergenic -63608 NM_012454 26230 Hs.586279 NM_012454 HPRD:05273 TIAM2 STEF|TIAM-2 T-cell lymphoma invasion and metastasis 2 protein-coding 13-PTNLD9-TUMOR_peak_16308 chr14 76618108 76618530 + 10.19617 NA promoter-TSS (NM_017926) promoter-TSS (NM_017926) 91 NM_017926 55668 Hs.410231 NM_017926 HPRD:16594 GPATCH2L C14orf118 G patch domain containing 2-like protein-coding 13-PTNLD9-TUMOR_peak_34411 chr3 45241475 45241727 + 10.19617 NA Intergenic Intergenic 26213 NM_015444 25907 Hs.740403 NM_015444 HPRD:15252 TMEM158 BBP|RIS1|p40BBP transmembrane protein 158 (gene/pseudogene) protein-coding 13-PTNLD9-TUMOR_peak_53840 chr9 87873832 87873959 + 10.19617 NA Intergenic Intergenic 483049 NM_001286715 23287 Hs.719980 NM_015239 HPRD:08442 AGTPBP1 CCP1|NNA1 ATP/GTP binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_45368 chr6 55690631 55690808 + 10.19617 NA intron (NM_021073, intron 1 of 6) intron (NM_021073, intron 1 of 6) 49656 NM_021073 653 Hs.296648 NM_021073 HPRD:00210 BMP5 - bone morphogenetic protein 5 protein-coding 13-PTNLD9-TUMOR_peak_55489 chrX 3302529 3302682 + 10.19617 NA Intergenic Intergenic -37921 NM_015419 25878 Hs.369422 NM_015419 HPRD:06456 MXRA5 - matrix-remodelling associated 5 protein-coding 13-PTNLD9-TUMOR_peak_36731 chr3 171815031 171815160 + 10.19617 NA intron (NM_001135095, intron 1 of 25) intron (NM_001135095, intron 1 of 25) 56751 NM_001135095 64778 Hs.744888 NM_022763 HPRD:10943 FNDC3B FAD104|PRO4979|YVTM2421 fibronectin type III domain containing 3B protein-coding 13-PTNLD9-TUMOR_peak_46301 chr6 151007121 151007298 + 10.19617 NA intron (NM_001029884, intron 2 of 16) intron (NM_001029884, intron 2 of 16) 86210 NM_001029884 57480 Hs.189781 NM_001029884 ENSG00000120278 PLEKHG1 ARHGEF41 pleckstrin homology domain containing, family G (with RhoGef domain) member 1 protein-coding 13-PTNLD9-TUMOR_peak_32224 chr21 36457290 36457452 + 10.19617 NA Intergenic Intergenic -35776 NM_001754 861 Hs.149261 NM_001754 HPRD:01043 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBFA2|EVI-1|PEBP2aB runt-related transcription factor 1 protein-coding 13-PTNLD9-TUMOR_peak_50415 chr8 26724781 26724910 + 10.19617 NA Intergenic Intergenic -1923 NM_033303 148 Hs.709175 NM_000680 HPRD:00081 ADRA1A ADRA1C|ADRA1L1|ALPHA1AAR adrenoceptor alpha 1A protein-coding 13-PTNLD9-TUMOR_peak_476 chr1 14541797 14541950 + 10.19617 NA Intergenic Intergenic -383340 NM_015209 23254 Hs.368823 NM_015209 HPRD:11122 KAZN KAZ kazrin, periplakin interacting protein protein-coding 13-PTNLD9-TUMOR_peak_39840 chr4 170037108 170037283 + 10.19617 NA intron (NM_020870, intron 10 of 11) L2b|LINE|L2 -105727 NM_032783 84869 Hs.659311 NM_032783 HPRD:07859 CBR4 SDR45C1 carbonyl reductase 4 protein-coding 13-PTNLD9-TUMOR_peak_31264 chr20 45810090 45810228 + 10.19617 NA intron (NM_005244, intron 14 of 15) MLT1J2|LTR|ERVL-MaLR 14550 NR_037410 100500814 NR_037410 MIR3616 - microRNA 3616 ncRNA 13-PTNLD9-TUMOR_peak_33399 chr22 44173233 44173421 + 10.19617 NA intron (NM_022785, intron 3 of 31) intron (NM_022785, intron 3 of 31) 34890 NM_022785 64800 Hs.658996 NM_022785 HPRD:13391 EFCAB6 DJBP|HSCBCIP1|dJ185D5.1 EF-hand calcium binding domain 6 protein-coding 13-PTNLD9-TUMOR_peak_21512 chr17 49841834 49841980 + 10.19617 NA intron (NM_001082533, intron 4 of 9) intron (NM_001082533, intron 4 of 9) 394225 NM_020178 56934 Hs.463466 NM_020178 HPRD:05224 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase X protein-coding 13-PTNLD9-TUMOR_peak_14751 chr13 49930496 49930618 + 10.19617 NA intron (NM_001287339, intron 5 of 9) L3|LINE|CR1 45117 NM_030925 81617 Hs.87159 NM_030925 HPRD:12993 CAB39L MO25-BETA|MO2L|bA103J18.3 calcium binding protein 39-like protein-coding 13-PTNLD9-TUMOR_peak_10056 chr11 62178571 62178695 + 10.19617 NA Intergenic Intergenic -7874 NM_003357 7356 Hs.523732 NM_003357 HPRD:01884 SCGB1A1 CC10|CC16|CCPBP|CCSP|UGB|UP-1|UP1 secretoglobin, family 1A, member 1 (uteroglobin) protein-coding 13-PTNLD9-TUMOR_peak_10613 chr11 73748432 73748587 + 10.19617 NA intron (NM_015531, intron 30 of 30) intron (NM_015531, intron 30 of 30) -28227 NM_022803 7352 Hs.101337 NM_003356 HPRD:03623 UCP3 SLC25A9 uncoupling protein 3 (mitochondrial, proton carrier) protein-coding 13-PTNLD9-TUMOR_peak_33406 chr22 44433561 44433667 + 10.19617 NA intron (NM_001243386, intron 1 of 11) intron (NM_001243386, intron 1 of 11) 11430 NM_001243386 29780 Hs.475074 NM_013327 HPRD:16284 PARVB CGI-56 parvin, beta protein-coding 13-PTNLD9-TUMOR_peak_48667 chr7 102632262 102632385 + 10.19617 NA intron (NR_105043, intron 7 of 20) intron (NR_105043, intron 7 of 20) 78979 NM_001031692 10234 Hs.567412 NM_005824 HPRD:10059 LRRC17 P37NB leucine rich repeat containing 17 protein-coding 13-PTNLD9-TUMOR_peak_1976 chr1 60392356 60392574 + 10.19617 NA promoter-TSS (NM_000775) promoter-TSS (NM_000775) -42 NM_000775 1573 Hs.152096 NM_000775 HPRD:03159 CYP2J2 CPJ2 cytochrome P450, family 2, subfamily J, polypeptide 2 protein-coding 13-PTNLD9-TUMOR_peak_25976 chr2 3617277 3617545 + 10.19617 NA Intergenic SVA_D|Other|Other -5442 NM_001011 6201 Hs.534346 NM_001011 HPRD:04712 RPS7 DBA8|S7 ribosomal protein S7 protein-coding 13-PTNLD9-TUMOR_peak_51003 chr8 58563235 58563375 + 10.19617 NA Intergenic Intergenic -343808 NM_147189 90362 Hs.154652 NM_147189 HPRD:14609 FAM110B C8orf72 family with sequence similarity 110, member B protein-coding 13-PTNLD9-TUMOR_peak_8262 chr10 105476197 105476331 + 10.19617 NA intron (NM_014631, intron 5 of 13) intron (NM_014631, intron 5 of 13) -30273 NR_038940 100505839 Hs.655149 NR_038940 SH3PXD2A-AS1 - SH3PXD2A antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_41423 chr5 80802855 80803007 + 10.19617 NA intron (NM_001256735, intron 4 of 15) intron (NM_001256735, intron 4 of 15) -112943 NM_130767 134526 Hs.591756 NM_130767 HPRD:16680 ACOT12 CACH-1|Cach|STARD15|THEAL acyl-CoA thioesterase 12 protein-coding 13-PTNLD9-TUMOR_peak_44942 chr6 40263512 40263648 + 10.19617 NA Intergenic THE1B|LTR|ERVL-MaLR 60165 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 13-PTNLD9-TUMOR_peak_43119 chr5 174202290 174202424 + 10.19617 NA Intergenic Intergenic 23620 NR_039777 100616202 NR_039777 miRBase:MI0017261 MIR4634 - microRNA 4634 ncRNA 13-PTNLD9-TUMOR_peak_42821 chr5 158831415 158831550 + 10.19617 NA Intergenic Intergenic 61802 NR_027110 285627 Hs.552766 NR_027110 ENSG00000253298 LOC285627 - uncharacterized LOC285627 ncRNA 13-PTNLD9-TUMOR_peak_50200 chr8 19266035 19266139 + 10.19617 NA intron (NR_024040, intron 9 of 9) intron (NR_024040, intron 9 of 9) 94600 NM_001174159 63898 Hs.303208 NM_022071 HPRD:08340 SH2D4A PPP1R38|SH2A SH2 domain containing 4A protein-coding 13-PTNLD9-TUMOR_peak_35588 chr3 123305953 123306108 + 10.19617 NA intron (NR_121654, intron 2 of 3) LTR23|LTR|ERV1 1670 NR_121654 100506826 Hs.556600 NR_038266 ENSG00000239523 MYLK-AS1 - MYLK antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_38581 chr4 74591874 74592008 + 10.19617 NA Intergenic Intergenic -14282 NM_000584 3576 Hs.624 NM_000584 HPRD:00909 CXCL8 GCP-1|GCP1|IL8|LECT|LUCT|LYNAP|MDNCF|MONAP|NAF|NAP-1|NAP1 chemokine (C-X-C motif) ligand 8 protein-coding 13-PTNLD9-TUMOR_peak_12850 chr12 53184043 53184153 + 10.19617 NA exon (NM_057088, exon 9 of 9) exon (NM_057088, exon 9 of 9) 5794 NM_057088 3850 Hs.680652 NM_057088 HPRD:01013 KRT3 CK3|K3 keratin 3 protein-coding 13-PTNLD9-TUMOR_peak_43347 chr5 180403613 180403782 + 10.19617 NA Intergenic LTR19B|LTR|ERV1 -12148 NM_197975 10917 Hs.225949 NM_006707 HPRD:08393 BTNL3 BTN9.1|BTNLR butyrophilin-like 3 protein-coding 13-PTNLD9-TUMOR_peak_35286 chr3 108294370 108294615 + 10.19617 NA intron (NM_020890, intron 8 of 20) (TA)n|Simple_repeat|Simple_repeat -13845 NM_014648 9666 Hs.409210 NM_014648 HPRD:10562 DZIP3 PPP1R66|UURF2|hRUL138 DAZ interacting zinc finger protein 3 protein-coding 13-PTNLD9-TUMOR_peak_40337 chr5 11167239 11167385 + 10.19617 NA intron (NM_001288717, intron 10 of 20) intron (NM_001288717, intron 10 of 20) -405925 NM_001291963 1611 Hs.75189 NM_004394 HPRD:02977 DAP - death-associated protein protein-coding 13-PTNLD9-TUMOR_peak_6906 chr10 33860640 33860857 + 10.19617 NA Intergenic Intergenic 200860 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 13-PTNLD9-TUMOR_peak_26185 chr2 15851562 15851685 + 10.19617 NA intron (NR_110201, intron 4 of 5) L2c|LINE|L2 20717 NR_110201 101926966 Hs.502835 NR_110201 ENSG00000231031 LOC101926966 - uncharacterized LOC101926966 ncRNA 13-PTNLD9-TUMOR_peak_30284 chr20 2132505 2132641 + 10.19617 NA Intergenic Intergenic 50045 NM_080836 140901 Hs.100057 NM_080836 HPRD:11612 STK35 CLIK1|STK35L1 serine/threonine kinase 35 protein-coding 13-PTNLD9-TUMOR_peak_14884 chr13 77246712 77246857 + 10.19617 NA Intergenic Intergenic 213756 NM_138444 115207 Hs.644125 NM_138444 HPRD:11060 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 13-PTNLD9-TUMOR_peak_11106 chr11 106604631 106604778 + 10.19617 NA intron (NM_000855, intron 6 of 7) intron (NM_000855, intron 6 of 7) 284467 NM_000855 2977 Hs.24321 NM_000855 HPRD:03146 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1, soluble, alpha 2 protein-coding 13-PTNLD9-TUMOR_peak_7928 chr10 87961925 87962101 + 10.19617 NA intron (NM_017551, intron 3 of 15) intron (NM_017551, intron 3 of 15) 62532 NR_029907 442911 NR_029907 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 13-PTNLD9-TUMOR_peak_38054 chr4 18884282 18884453 + 10.19617 NA Intergenic L2c|LINE|L2 -860884 NM_153686 254251 Hs.446201 NM_153686 HPRD:10088 LCORL MLR1 ligand dependent nuclear receptor corepressor-like protein-coding 13-PTNLD9-TUMOR_peak_5381 chr1 214108108 214108242 + 10.19617 NA Intergenic Intergenic 10083 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 13-PTNLD9-TUMOR_peak_16378 chr14 81875115 81875256 + 10.19617 NA intron (NM_001256430, intron 2 of 7) intron (NM_001256430, intron 2 of 7) 18371 NM_033104 85439 Hs.14248 NM_033104 HPRD:10531 STON2 STN2|STNB|STNB2 stonin 2 protein-coding 13-PTNLD9-TUMOR_peak_46079 chr6 133985283 133985434 + 10.19617 NA intron (NR_109982, intron 4 of 8) CpG -156927 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 13-PTNLD9-TUMOR_peak_4386 chr1 171437648 171437812 + 10.19617 NA Intergenic Intergenic -16936 NM_015172 23215 Hs.494614 NM_015172 HPRD:16539 PRRC2C BAT2-iso|BAT2D1|BAT2L2|XTP2 proline-rich coiled-coil 2C protein-coding 13-PTNLD9-TUMOR_peak_52789 chr9 15735202 15735366 + 10.19617 NA intron (NM_173550, intron 16 of 25) intron (NM_173550, intron 16 of 25) 182187 NM_173550 203238 Hs.17267 NM_173550 HPRD:10805 CCDC171 C9orf93|bA536D16.1|bA778P13.1 coiled-coil domain containing 171 protein-coding 13-PTNLD9-TUMOR_peak_46000 chr6 124857012 124857173 + 10.19617 NA intron (NM_001300738, intron 4 of 7) intron (NM_001300738, intron 4 of 7) 252941 NM_001300740 154215 Hs.656604 NM_153355 HPRD:18168 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 Na+/K+ transporting ATPase interacting 2 protein-coding 13-PTNLD9-TUMOR_peak_11346 chr11 117480852 117481018 + 10.19617 NA intron (NM_020693, intron 3 of 32) intron (NM_020693, intron 3 of 32) 187041 NM_020693 57453 Hs.659513 NM_020693 HPRD:10921 DSCAML1 - Down syndrome cell adhesion molecule like 1 protein-coding 13-PTNLD9-TUMOR_peak_39297 chr4 126656426 126656588 + 10.19617 NA Intergenic Intergenic 228093 NR_031746 100302267 NR_031746 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 13-PTNLD9-TUMOR_peak_12760 chr12 51041270 51041636 + 10.19617 NA intron (NM_173602, intron 3 of 37) intron (NM_173602, intron 3 of 37) -116336 NM_005171 466 Hs.648565 NM_005171 HPRD:00440 ATF1 EWS-ATF1|FUS/ATF-1|TREB36 activating transcription factor 1 protein-coding 13-PTNLD9-TUMOR_peak_51011 chr8 59754720 59754835 + 10.19617 NA intron (NM_014729, intron 4 of 8) intron (NM_014729, intron 4 of 8) -182373 NM_003580 8439 Hs.372000 NM_003580 HPRD:09117 NSMAF FAN neutral sphingomyelinase (N-SMase) activation associated factor protein-coding 13-PTNLD9-TUMOR_peak_18417 chr16 6955730 6955886 + 10.19617 NA intron (NM_001142334, intron 1 of 13) intron (NM_001142334, intron 1 of 13) 131998 NM_001142334 54715 Hs.459842 NM_018723 HPRD:16091 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding protein, fox-1 homolog (C. elegans) 1 protein-coding 13-PTNLD9-TUMOR_peak_46512 chr6 166731854 166731983 + 10.19617 NA Intergenic Intergenic -10047 NM_175922 285800 Hs.731862 NM_175922 HPRD:17533 PRR18 - proline rich 18 protein-coding 13-PTNLD9-TUMOR_peak_44157 chr6 24966791 24966953 + 10.19617 NA intron (NM_001286446, intron 1 of 13) intron (NM_001286446, intron 1 of 13) -30592 NM_001286445 9750 Hs.559459 NM_014722 HPRD:12881 FAM65B C6orf32|DIFF40|DIFF48|MYONAP|PL48 family with sequence similarity 65, member B protein-coding 13-PTNLD9-TUMOR_peak_50407 chr8 26486212 26486443 + 10.19617 NA intron (NM_001197293, intron 7 of 13) intron (NM_001197293, intron 7 of 13) 50406 NM_001244604 1808 Hs.593187 NM_001386 HPRD:03914 DPYSL2 CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2 dihydropyrimidinase-like 2 protein-coding 13-PTNLD9-TUMOR_peak_13685 chr12 106316537 106316666 + 10.19617 NA Intergenic Intergenic 216049 NR_110111 101929110 Hs.145944 NR_110108 ENSG00000257859 CASC18 - cancer susceptibility candidate 18 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_14807 chr13 53359910 53360223 + 10.19617 NA Intergenic Intergenic -24119 NR_031582 100313778 NR_031582 miRBase:MI0004065 MIR759 hsa-mir-759 microRNA 759 ncRNA 13-PTNLD9-TUMOR_peak_42219 chr5 137347765 137347957 + 10.19617 NA intron (NM_001101801, intron 3 of 21) intron (NM_001101801, intron 3 of 21) 20941 NM_016603 51306 Hs.567453 NM_016603 HPRD:06464 FAM13B ARHGAP49|C5orf5|FAM13B1|KHCHP|N61 family with sequence similarity 13, member B protein-coding 13-PTNLD9-TUMOR_peak_6331 chr10 4037542 4037665 + 10.19617 NA Intergenic L1PA8|LINE|L1 4251 NR_106726 102464829 NR_106726 MIR6078 hsa-mir-6078 microRNA 6078 ncRNA 13-PTNLD9-TUMOR_peak_15568 chr14 36347833 36347940 + 10.19617 NA Intergenic Intergenic 52289 NM_032352 84312 Hs.525299 NM_032352 HPRD:16564 BRMS1L BRMS1 breast cancer metastasis-suppressor 1-like protein-coding 13-PTNLD9-TUMOR_peak_14584 chr13 34738765 34738965 + 10.19617 NA Intergenic Intergenic 346659 NM_181558 5983 Hs.115474 NM_002915 HPRD:02676 RFC3 RFC38 replication factor C (activator 1) 3, 38kDa protein-coding 13-PTNLD9-TUMOR_peak_27893 chr2 103280992 103281136 + 10.19617 NA intron (NM_003048, intron 2 of 11) intron (NM_003048, intron 2 of 11) 44898 NM_003048 6549 Hs.250083 NM_003048 HPRD:02756 SLC9A2 NHE2 solute carrier family 9, subfamily A (NHE2, cation proton antiporter 2), member 2 protein-coding 13-PTNLD9-TUMOR_peak_34991 chr3 73591424 73591545 + 10.19617 NA intron (NR_121660, intron 1 of 1) intron (NR_121660, intron 1 of 1) 21011 NR_121660 101927296 Hs.662049 NR_121660 LOC101927296 - uncharacterized LOC101927296 ncRNA 13-PTNLD9-TUMOR_peak_40654 chr5 38563834 38563999 + 10.19617 NA intron (NR_103553, intron 1 of 2) MIR|SINE|MIR -6253 NR_037423 100500824 NR_037423 miRBase:MI0016050 MIR3650 - microRNA 3650 ncRNA 13-PTNLD9-TUMOR_peak_38003 chr4 11914691 11914898 + 10.19617 NA Intergenic MLT2B3|LTR|ERVL -484257 NM_005114 9957 Hs.507348 NM_005114 HS3ST1 3OST|3OST1 heparan sulfate (glucosamine) 3-O-sulfotransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_43027 chr5 172116074 172116231 + 10.19617 NA 3' UTR (NM_001142651, exon 5 of 5) 3' UTR (NM_001142651, exon 5 of 5) 47876 NM_001142651 54492 Hs.91521 NM_001142651 ENSG00000214357 NEURL1B NEURL3|hNeur2|neur2 neuralized E3 ubiquitin protein ligase 1B protein-coding 13-PTNLD9-TUMOR_peak_7803 chr10 77793418 77793622 + 10.19617 NA intron (NM_032024, intron 1 of 5) intron (NM_032024, intron 1 of 5) 251001 NM_032024 83938 Hs.118161 NM_032024 HPRD:12560 C10orf11 OCA5|OCA7 chromosome 10 open reading frame 11 protein-coding 13-PTNLD9-TUMOR_peak_45818 chr6 105794057 105794235 + 10.19617 NA intron (NM_002726, intron 7 of 14) intron (NM_002726, intron 7 of 14) 56853 NM_002726 5550 Hs.436564 NM_002726 HPRD:02673 PREP PE|PEP prolyl endopeptidase protein-coding 13-PTNLD9-TUMOR_peak_13969 chr12 117787957 117788234 + 10.19617 NA intron (NM_000620, intron 1 of 28) intron (NM_000620, intron 1 of 28) 11512 NM_000620 4842 Hs.654410 NM_000620 HPRD:01226 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 (neuronal) protein-coding 13-PTNLD9-TUMOR_peak_34213 chr3 32944643 32944797 + 10.19617 NA Intergenic LTR12C|LTR|ERV1 -48346 NM_005508 1233 Hs.184926 NM_005508 CCR4 CC-CKR-4|CD194|CKR4|CMKBR4|ChemR13|HGCN:14099|K5-5 chemokine (C-C motif) receptor 4 protein-coding 13-PTNLD9-TUMOR_peak_53934 chr9 92100110 92100244 + 10.19617 NA Intergenic Intergenic -5566 NM_001142287 10507 Hs.494406 NM_006378 HPRD:03520 SEMA4D C9orf164|CD100|M-sema-G|SEMAJ|coll-4 sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D protein-coding 13-PTNLD9-TUMOR_peak_52218 chr8 135790494 135790664 + 10.19617 NA Intergenic Intergenic 22271 NR_029666 407030 NR_029666 miRBase:MI0000441 MIR30B MIRN30B microRNA 30b ncRNA 13-PTNLD9-TUMOR_peak_24698 chr19 34175269 34175410 + 10.19617 NA promoter-TSS (NM_022467) promoter-TSS (NM_022467) -95 NM_022467 64377 Hs.165724 NM_022467 HPRD:07632 CHST8 GALNAC4ST1|GalNAc4ST carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8 protein-coding 13-PTNLD9-TUMOR_peak_39960 chr4 184414182 184414341 + 10.19617 NA Intergenic L1MEf|LINE|L1 11407 NR_033995 389247 Hs.385787 NR_033995 LOC389247 - uncharacterized LOC389247 ncRNA 13-PTNLD9-TUMOR_peak_25025 chr19 41589486 41589735 + 10.19617 NA Intergenic L2|LINE|L2 -4746 NM_000766 1553 Hs.567252 NM_000766 HPRD:07454 CYP2A13 CPAD|CYP2A|CYPIIA13 cytochrome P450, family 2, subfamily A, polypeptide 13 protein-coding 13-PTNLD9-TUMOR_peak_36238 chr3 142527058 142527167 + 10.19617 NA TTS (NM_003304) TTS (NM_003304) 80933 NM_013363 26577 Hs.8944 NM_013363 HPRD:06139 PCOLCE2 PCPE2 procollagen C-endopeptidase enhancer 2 protein-coding 13-PTNLD9-TUMOR_peak_26060 chr2 9734919 9735090 + 10.19617 NA intron (NM_006826, intron 2 of 5) intron (NM_006826, intron 2 of 5) 36180 NM_006826 10971 Hs.74405 NM_006826 HPRD:00886 YWHAQ 14-3-3|1C5|HS1 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta protein-coding 13-PTNLD9-TUMOR_peak_55010 chr9 137554051 137554232 + 10.19617 NA intron (NM_001278074, intron 1 of 65) intron (NM_001278074, intron 1 of 65) 20490 NM_000093 1289 Hs.210283 NM_000093 HPRD:00368 COL5A1 - collagen, type V, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_20552 chr17 17224388 17224554 + 10.19617 NA intron (NM_020201, intron 2 of 4) intron (NM_020201, intron 2 of 4) 17791 NM_020201 56953 Hs.513977 NM_020201 HPRD:12009 NT5M dNT-2|dNT2|mdN 5',3'-nucleotidase, mitochondrial protein-coding 13-PTNLD9-TUMOR_peak_45532 chr6 76128142 76128326 + 10.19617 NA intron (NM_001300866, intron 1 of 6) intron (NM_001300866, intron 1 of 6) 75311 NR_110608 27145 Hs.696158 NM_015687 HPRD:09533 FILIP1 FILIP filamin A interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_30543 chr20 19028367 19028491 + 10.19617 NA Intergenic MLT2E|LTR|ERVL -164861 NM_020689 57419 Hs.654790 NM_020689 HPRD:15352 SLC24A3 NCKX3 solute carrier family 24 (sodium/potassium/calcium exchanger), member 3 protein-coding 13-PTNLD9-TUMOR_peak_36835 chr3 177646143 177646277 + 10.19617 NA Intergenic Intergenic 111557 NR_110826 102724550 Hs.570526 NR_110826 LOC102724550 - uncharacterized LOC102724550 ncRNA 13-PTNLD9-TUMOR_peak_43546 chr6 3742716 3742847 + 10.19617 NA intron (NM_183373, intron 1 of 4) intron (NM_183373, intron 1 of 4) 9465 NM_183373 221749 Hs.484500 NM_183373 HPRD:12854 PXDC1 C6orf145 PX domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_49948 chr8 1778020 1778175 + 10.19617 NA intron (NM_014629, intron 1 of 28) intron (NM_014629, intron 1 of 28) 5948 NM_014629 9639 Hs.98594 NM_014629 HPRD:09735 ARHGEF10 GEF10 Rho guanine nucleotide exchange factor (GEF) 10 protein-coding 13-PTNLD9-TUMOR_peak_42005 chr5 130946106 130946313 + 10.19617 NA intron (NM_001164386, intron 1 of 28) ERV3-16A3_I-int|LTR|ERVL 24720 NM_001164389 51735 Hs.483329 NM_016340 HPRD:11483 RAPGEF6 KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2 Rap guanine nucleotide exchange factor (GEF) 6 protein-coding 13-PTNLD9-TUMOR_peak_39639 chr4 152406005 152406117 + 10.19617 NA intron (NM_001109977, intron 3 of 13) intron (NM_001109977, intron 3 of 13) 75663 NM_001109977 729830 Hs.633810 NM_001109977 ENSG00000164142 FAM160A1 - family with sequence similarity 160, member A1 protein-coding 13-PTNLD9-TUMOR_peak_26999 chr2 60441551 60441663 + 10.19617 NA Intergenic Intergenic 172973 NR_039631 100616473 NR_039631 miRBase:MI0016772 MIR4432 - microRNA 4432 ncRNA 13-PTNLD9-TUMOR_peak_45783 chr6 97625921 97626030 + 10.19617 NA intron (NM_198468, intron 18 of 24) intron (NM_198468, intron 18 of 24) 105077 NM_198468 253714 Hs.444292 NM_198468 HPRD:12865 MMS22L C6orf167|dJ39B17.2 MMS22-like, DNA repair protein protein-coding 13-PTNLD9-TUMOR_peak_42925 chr5 168335278 168335561 + 10.19617 NA intron (NM_003062, intron 4 of 35) intron (NM_003062, intron 4 of 35) -104813 NR_109897 728095 Hs.145601 NR_109897 ENSG00000248222 CTB-174D11.1 - uncharacterized LOC728095 ncRNA 13-PTNLD9-TUMOR_peak_15100 chr13 110651253 110651481 + 10.19617 NA Intergenic Intergenic -212453 NM_003749 8660 Hs.442344 NM_003749 HPRD:02878 IRS2 IRS-2 insulin receptor substrate 2 protein-coding 13-PTNLD9-TUMOR_peak_33367 chr22 42765359 42765479 + 10.19617 NA promoter-TSS (NR_120595) promoter-TSS (NR_120595) -205 NR_120596 102723775 Hs.335413 NR_120595 LINC01315 lnc-C22orf32-1 long intergenic non-protein coding RNA 1315 ncRNA 13-PTNLD9-TUMOR_peak_57044 chrY 58876730 58876836 + 10.19617 NA Intergenic (CATTC)n|Satellite|Satellite -223674 NM_005840 10251 Hs.381912 NM_005840 HPRD:03917 SPRY3 HSPRY3|spry-3 sprouty homolog 3 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_15745 chr14 51553786 51553913 + 10.19617 NA intron (NM_015163, intron 1 of 9) intron (NM_015163, intron 1 of 9) 8573 NM_052978 114088 Hs.654750 NM_015163 HPRD:05947 TRIM9 RNF91|SPRING tripartite motif containing 9 protein-coding 13-PTNLD9-TUMOR_peak_34934 chr3 71205340 71205523 + 10.19617 NA intron (NM_001244810, intron 6 of 20) intron (NM_001244810, intron 6 of 20) -25339 NM_001244815 27086 Hs.59368 NM_032682 HPRD:18518 FOXP1 12CC4|QRF1|hFKH1B forkhead box P1 protein-coding 13-PTNLD9-TUMOR_peak_15770 chr14 52924750 52924890 + 10.19617 NA intron (NM_001160047, intron 16 of 20) intron (NM_001160047, intron 16 of 20) 94481 NM_020784 57544 Hs.532609 NM_020784 HPRD:11140 TXNDC16 ERp90|KIAA1344 thioredoxin domain containing 16 protein-coding 13-PTNLD9-TUMOR_peak_39696 chr4 154605387 154605518 + 10.19617 NA promoter-TSS (NM_003264) promoter-TSS (NM_003264) 11 NM_003264 7097 Hs.519033 NM_003264 TLR2 CD282|TIL4 toll-like receptor 2 protein-coding 13-PTNLD9-TUMOR_peak_6410 chr10 6828848 6828977 + 10.19617 NA intron (NR_038291, intron 2 of 4) L1ME2|LINE|L1 7352 NR_038291 100507127 Hs.498571 NR_038291 ENSG00000238266 LINC00707 - long intergenic non-protein coding RNA 707 ncRNA 13-PTNLD9-TUMOR_peak_55518 chrX 9820098 9820244 + 10.19617 NA intron (NM_001649, intron 1 of 9) intron (NM_001649, intron 1 of 9) 65675 NM_001649 357 Hs.567236 NM_001649 HPRD:02113 SHROOM2 APXL|HSAPXL shroom family member 2 protein-coding 13-PTNLD9-TUMOR_peak_21026 chr17 38776318 38776657 + 10.19617 NA Intergenic Intergenic 27616 NM_003079 6605 Hs.743978 NM_003079 HPRD:04382 SMARCE1 BAF57 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 protein-coding 13-PTNLD9-TUMOR_peak_16184 chr14 70540795 70540904 + 10.19617 NA intron (NM_033262, intron 2 of 7) intron (NM_033262, intron 2 of 7) 6085 NM_182936 6547 Hs.337696 NM_033262 HPRD:09723 SLC8A3 NCX3 solute carrier family 8 (sodium/calcium exchanger), member 3 protein-coding 13-PTNLD9-TUMOR_peak_21365 chr17 46680064 46680168 + 10.19617 NA TTS (NR_110329) TTS (NR_110329) 2218 NM_018952 3216 Hs.98428 NM_018952 HPRD:00849 HOXB6 HOX2|HOX2B|HU-2|Hox-2.2 homeobox B6 protein-coding 13-PTNLD9-TUMOR_peak_34135 chr3 27472704 27472952 + 10.19617 NA exon (NM_003615, exon 7 of 25) exon (NM_003615, exon 7 of 25) 25417 NM_001258380 9497 Hs.250072 NM_003615 HPRD:04521 SLC4A7 NBC2|NBC3|NBCN1|SBC2|SLC4A6 solute carrier family 4, sodium bicarbonate cotransporter, member 7 protein-coding 13-PTNLD9-TUMOR_peak_5344 chr1 211556066 211556185 + 10.19617 NA promoter-TSS (NR_026761) promoter-TSS (NR_026761) 28 NR_026761 84791 Hs.523932 NM_032705 HPRD:17500 LINC00467 C1orf97 long intergenic non-protein coding RNA 467 ncRNA 13-PTNLD9-TUMOR_peak_15258 chr14 21323887 21324012 + 10.19617 NA Intergenic Intergenic -35613 NM_002935 6037 Hs.73839 NM_002935 HPRD:00575 RNASE3 ECP|RNS3 ribonuclease, RNase A family, 3 protein-coding 13-PTNLD9-TUMOR_peak_46043 chr6 128919715 128919962 + 10.19617 NA Intergenic Intergenic -78019 NM_001291984 5796 Hs.155919 NM_002844 HPRD:03968 PTPRK R-PTP-kappa protein tyrosine phosphatase, receptor type, K protein-coding 13-PTNLD9-TUMOR_peak_34323 chr3 41189946 41190100 + 10.19617 NA Intergenic Intergenic -50919 NM_001904 1499 Hs.476018 NM_001904 HPRD:00286 CTNNB1 CTNNB|MRD19|armadillo catenin (cadherin-associated protein), beta 1, 88kDa protein-coding 13-PTNLD9-TUMOR_peak_38092 chr4 23325977 23326135 + 10.19617 NA intron (NR_039674, intron 1 of 2) intron (NR_039674, intron 1 of 2) 138670 NR_039674 100616252 NR_039674 miRBase:MI0016815 MIR548AJ2 - microRNA 548aj-2 ncRNA 13-PTNLD9-TUMOR_peak_5911 chr1 234721533 234721653 + 10.19617 NA Intergenic L2b|LINE|L2 23678 NM_182972 359948 Hs.350268 NM_182972 HPRD:17160 IRF2BP2 - interferon regulatory factor 2 binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_7138 chr10 43265170 43265426 + 10.19617 NA Intergenic MIRb|SINE|MIR -12656 NM_014753 9790 Hs.10848 NM_014753 HPRD:10689 BMS1 ACC|BMS1L BMS1 ribosome biogenesis factor protein-coding 13-PTNLD9-TUMOR_peak_11859 chr12 3601476 3601604 + 10.19617 NA intron (NM_019854, intron 1 of 9) CpG 1176 NM_019854 56341 Hs.504530 NM_019854 HPRD:11029 PRMT8 HRMT1L3|HRMT1L4 protein arginine methyltransferase 8 protein-coding 13-PTNLD9-TUMOR_peak_39945 chr4 183897070 183897179 + 10.19617 NA Intergenic MER44B|DNA|TcMar-Tigger -58494 NM_001012732 1635 Hs.183850 NM_001921 HPRD:09623 DCTD - dCMP deaminase protein-coding 13-PTNLD9-TUMOR_peak_33109 chr22 31045440 31045656 + 10.19617 NA Intergenic Intergenic 13755 NM_001001479 339665 Hs.660384 NM_001001479 HPRD:15376 SLC35E4 - solute carrier family 35, member E4 protein-coding 13-PTNLD9-TUMOR_peak_37846 chr4 7884579 7884720 + 10.19617 NA intron (NM_198595, intron 1 of 16) AluJb|SINE|Alu 57004 NM_198595 60312 Hs.529369 NM_021638 HPRD:09747 AFAP1 AFAP|AFAP-110|AFAP110 actin filament associated protein 1 protein-coding 13-PTNLD9-TUMOR_peak_38154 chr4 28289505 28289716 + 10.19617 NA Intergenic Intergenic -531594 NR_036237 100422937 NR_036237 MIR4275 - microRNA 4275 ncRNA 13-PTNLD9-TUMOR_peak_46088 chr6 134617164 134617450 + 10.19617 NA intron (NM_001143676, intron 1 of 13) MIR|SINE|MIR 21889 NM_001143676 6446 Hs.510078 NM_005627 HPRD:04264 SGK1 SGK serum/glucocorticoid regulated kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_20914 chr17 35216160 35216331 + 10.19617 NA Intergenic Intergenic -78527 NM_005568 3975 Hs.443727 NM_005568 HPRD:09067 LHX1 LIM-1|LIM1 LIM homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_46292 chr6 150698351 150698530 + 10.19617 NA intron (NM_203395, intron 1 of 4) intron (NM_203395, intron 1 of 4) 8412 NM_001164695 389434 Hs.310225 NM_203395 HPRD:16668 IYD C6orf71|DEHAL1|TDH4|dJ422F24.1 iodotyrosine deiodinase protein-coding 13-PTNLD9-TUMOR_peak_32068 chr21 30106898 30107105 + 10.19617 NA Intergenic Intergenic 150694 NR_047510 29104 Hs.163846 NM_013240 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 (putative) protein-coding 13-PTNLD9-TUMOR_peak_22610 chr18 11808059 11808201 + 10.19617 NA intron (NM_001261443, intron 5 of 12) intron (NM_001261443, intron 5 of 12) -43259 NM_020412 57132 Hs.656244 NM_020412 HPRD:12106 CHMP1B C10orf2|C18-ORF2|C18orf2|CHMP1.5|Vps46-2|Vps46B|hVps46-2 charged multivesicular body protein 1B protein-coding 13-PTNLD9-TUMOR_peak_47443 chr7 47885859 47886040 + 10.19617 NA intron (NM_138295, intron 32 of 56) intron (NM_138295, intron 32 of 56) 51060 NM_025031 80099 Hs.287647 NM_025031 HPRD:08635 C7orf69 - chromosome 7 open reading frame 69 protein-coding 13-PTNLD9-TUMOR_peak_12236 chr12 14994891 14995034 + 10.19617 NA intron (NM_021071, intron 1 of 2) LTR79|LTR|ERVL 1451 NM_021071 420 Hs.591158 NM_021071 ART4 ARTC4|CD297|DO|DOK1 ADP-ribosyltransferase 4 (Dombrock blood group) protein-coding 13-PTNLD9-TUMOR_peak_46166 chr6 140591016 140591158 + 10.19617 NA Intergenic Intergenic 64698 NR_037441 100500879 NR_037441 miRBase:MI0016069 MIR3668 - microRNA 3668 ncRNA 13-PTNLD9-TUMOR_peak_36277 chr3 145881468 145881648 + 10.19528 NA Intergenic Intergenic -2276 NM_182943 5352 Hs.477866 NM_000935 HPRD:03519 PLOD2 LH2|TLH procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 protein-coding 13-PTNLD9-TUMOR_peak_49097 chr7 130681665 130681910 + 10.19528 NA intron (NR_109855, intron 2 of 4) intron (NR_109855, intron 2 of 4) 83564 NR_109780 100506860 Hs.635013 NR_109780 LOC100506860 - uncharacterized LOC100506860 ncRNA 13-PTNLD9-TUMOR_peak_32166 chr21 34661562 34661805 + 10.18626 NA intron (NM_000628, intron 6 of 6) ERV3-16A3_I-int|LTR|ERVL 23018 NM_000628 3588 Hs.654593 NM_000628 HPRD:00473 IL10RB CDW210B|CRF2-4|CRFB4|D21S58|D21S66|IL-10R2 interleukin 10 receptor, beta protein-coding 13-PTNLD9-TUMOR_peak_18517 chr16 11409488 11409621 + 10.18626 NA Intergenic Intergenic -29757 NM_152308 116028 Hs.347524 NM_152308 HPRD:14497 RMI2 BLAP18|C16orf75 RecQ mediated genome instability 2 protein-coding 13-PTNLD9-TUMOR_peak_39079 chr4 111332045 111332172 + 10.18626 NA Intergenic L1PA2|LINE|L1 -65121 NM_001977 2028 Hs.435765 NM_001977 ENPEP APA|CD249|gp160 glutamyl aminopeptidase (aminopeptidase A) protein-coding 13-PTNLD9-TUMOR_peak_43778 chr6 11390259 11390508 + 10.18512 NA Intergenic Intergenic -7802 NR_073131 4739 Hs.37982 NM_006403 HPRD:11888 NEDD9 CAS-L|CAS2|CASL|CASS2|HEF1 neural precursor cell expressed, developmentally down-regulated 9 protein-coding 13-PTNLD9-TUMOR_peak_51943 chr8 127559603 127559824 + 10.18512 NA Intergenic Intergenic 10998 NM_174911 157638 Hs.741352 NM_174911 HPRD:11403 FAM84B BCMP101|NSE2 family with sequence similarity 84, member B protein-coding 13-PTNLD9-TUMOR_peak_37133 chr3 187882211 187882491 + 10.18512 NA intron (NM_001167672, intron 1 of 9) intron (NM_001167672, intron 1 of 9) -10475 NR_036497 339929 Hs.596639 NR_036497 ENSG00000270959 LPP-AS2 - LPP antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_33878 chr3 14270330 14270833 + 10.18512 NA Intergenic HERVK3-int|LTR|ERVK 50353 NM_014463 27258 Hs.111632 NM_014463 LSM3 SMX4|USS2|YLR438C LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_35419 chr3 113567027 113567196 + 10.18512 NA intron (NM_017577, intron 2 of 17) MIRc|SINE|MIR 9430 NM_017577 54762 Hs.24583 NM_017577 ENSG00000178075 GRAMD1C - GRAM domain containing 1C protein-coding 13-PTNLD9-TUMOR_peak_5256 chr1 206315724 206315895 + 10.18512 NA Intergenic Intergenic -1650 NM_001910 1510 Hs.644082 NM_001910 HPRD:00294 CTSE CATE cathepsin E protein-coding 13-PTNLD9-TUMOR_peak_49400 chr7 140712008 140712118 + 10.18453 NA intron (NM_053035, intron 1 of 2) MamRep1161|DNA|TcMar 2416 NM_016071 51650 Hs.416207 NM_016071 HPRD:17598 MRPS33 MRP-S33|PTD003|S33mt mitochondrial ribosomal protein S33 protein-coding 13-PTNLD9-TUMOR_peak_48062 chr7 76141692 76141890 + 10.18453 NA intron (NM_030570, intron 2 of 4) intron (NM_030570, intron 2 of 4) 2051 NM_182683 80761 Hs.488861 NM_030570 HPRD:15626 UPK3B P35|UP3B|UPIIIB uroplakin 3B protein-coding 13-PTNLD9-TUMOR_peak_40675 chr5 39424965 39425198 + 10.18189 NA 5' UTR (NM_001343, exon 1 of 15) 5' UTR (NM_001343, exon 1 of 15) 254 NM_001343 1601 Hs.696631 NM_001343 HPRD:03139 DAB2 DOC-2|DOC2 Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_10731 chr11 77968007 77968326 + 10.18189 NA intron (NM_012296, intron 2 of 9) intron (NM_012296, intron 2 of 9) 68308 NM_020798 57558 Hs.531249 NM_020798 ENSG00000118369 USP35 - ubiquitin specific peptidase 35 protein-coding 13-PTNLD9-TUMOR_peak_42102 chr5 133588490 133588646 + 10.18189 NA Intergenic Intergenic -26618 NM_002715 5515 Hs.105818 NM_002715 PPP2CA PP2Ac|PP2CA|PP2Calpha|RP-C protein phosphatase 2, catalytic subunit, alpha isozyme protein-coding 13-PTNLD9-TUMOR_peak_47769 chr7 66508158 66508262 + 10.18189 NA intron (NM_018264, intron 7 of 15) intron (NM_018264, intron 7 of 15) 46418 NM_018264 55253 Hs.520917 NM_018264 HPRD:07711 TYW1 RSAFD1|TYW1A|YPL207W tRNA-yW synthesizing protein 1 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_47837 chr7 72213780 72213901 + 10.18189 NA intron (NM_001145440, intron 7 of 14) L1MDb|LINE|L1 50966 NR_039793 100616310 NR_039793 miRBase:MI0017277 MIR4650-1 - microRNA 4650-1 ncRNA 13-PTNLD9-TUMOR_peak_1211 chr1 38580078 38580269 + 10.18189 NA Intergenic Intergenic 25270 NR_037432 100500801 NR_037432 miRBase:MI0016060 MIR3659 - microRNA 3659 ncRNA 13-PTNLD9-TUMOR_peak_15780 chr14 53302285 53302429 + 10.18189 NA Intergenic Intergenic -43971 NM_198066 64841 Hs.478025 NM_198066 HPRD:17046 GNPNAT1 GNPNAT|Gpnat1 glucosamine-phosphate N-acetyltransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_24635 chr19 30296525 30296726 + 10.18189 NA Intergenic Intergenic -6276 NM_001238 898 Hs.244723 NM_001238 HPRD:00455 CCNE1 CCNE cyclin E1 protein-coding 13-PTNLD9-TUMOR_peak_17158 chr15 43622595 43623069 + 10.18189 NA promoter-TSS (NM_014793) promoter-TSS (NM_014793) -12 NM_014793 9836 Hs.200596 NM_014793 HPRD:17267 LCMT2 PPM2|TYW4 leucine carboxyl methyltransferase 2 protein-coding 13-PTNLD9-TUMOR_peak_20794 chr17 28088376 28088674 + 10.18189 NA promoter-TSS (NM_001282131) promoter-TSS (NM_001282131) -75 NM_001282131 85464 Hs.654754 NM_033389 HPRD:09487 SSH2 SSH-2|SSH-2L slingshot protein phosphatase 2 protein-coding 13-PTNLD9-TUMOR_peak_43140 chr5 175298652 175298966 + 10.18189 NA intron (NM_001008220, intron 1 of 3) CpG 308 NM_001008220 10814 Hs.193235 NM_006650 HPRD:09234 CPLX2 921-L|CPX-2|CPX2|Hfb1 complexin 2 protein-coding 13-PTNLD9-TUMOR_peak_18467 chr16 9940355 9940581 + 10.18189 NA intron (NM_000833, intron 6 of 13) L2c|LINE|L2 -282220 NR_106988 102465753 NR_106988 MIR7641-2 B-ATF|hsa-mir-7641-2 microRNA 7641-2 ncRNA 13-PTNLD9-TUMOR_peak_3690 chr1 152843916 152844019 + 10.18189 NA Intergenic Intergenic -6831 NM_030663 4184 Hs.111850 NM_030663 HPRD:03093 SMCP HSMCSGEN1|MCS|MCSP sperm mitochondria-associated cysteine-rich protein protein-coding 13-PTNLD9-TUMOR_peak_48712 chr7 104851330 104851452 + 10.18189 NA intron (NM_182692, intron 2 of 15) MLT1E1A|LTR|ERVL-MaLR 58133 NM_182691 6733 Hs.285197 NM_182691 HPRD:04280 SRPK2 SFRSK2 SRSF protein kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_32442 chr21 44144456 44144752 + 10.18189 NA intron (NM_001001569, intron 2 of 15) intron (NM_001001569, intron 2 of 15) 70742 NM_001001572 5152 Hs.473927 NM_002606 HPRD:09115 PDE9A HSPDE9A2 phosphodiesterase 9A protein-coding 13-PTNLD9-TUMOR_peak_5271 chr1 206577780 206577966 + 10.18182 NA intron (NM_001170637, intron 5 of 19) intron (NM_001170637, intron 5 of 19) 20506 NR_120535 100996712 Hs.497575 NM_001271887 SRGAP2D - SLIT-ROBO Rho GTPase activating protein 2D (pseudogene) pseudo 13-PTNLD9-TUMOR_peak_10335 chr11 67016119 67016308 + 10.17864 NA intron (NR_027473, intron 16 of 20) intron (NR_027473, intron 16 of 20) 8707 NM_001256405 22992 Hs.124147 NM_012308 HPRD:05741 KDM2A CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA lysine (K)-specific demethylase 2A protein-coding 13-PTNLD9-TUMOR_peak_30361 chr20 5635390 5635525 + 10.17864 NA Intergenic MIR|SINE|MIR -43785 NM_019593 56261 Hs.636359 NM_019593 HPRD:10025 GPCPD1 GDE5|GDPD6|PREI4 glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_53296 chr9 42665739 42665960 + 10.17864 NA Intergenic AluJo|SINE|Alu -52217 NM_199244 349334 Hs.712520 NM_199244 HPRD:17013 FOXD4L4 FOXD4L2|FOXD4b|bA460E7.2 forkhead box D4-like 4 protein-coding 13-PTNLD9-TUMOR_peak_13913 chr12 113652749 113653085 + 10.17864 NA intron (NM_138451, intron 1 of 2) intron (NM_138451, intron 1 of 2) 5982 NM_138451 115811 Hs.568276 NM_138451 HPRD:13744 IQCD 4933433C09Rik|CFAP84|DRC10 IQ motif containing D protein-coding 13-PTNLD9-TUMOR_peak_13332 chr12 71975055 71975331 + 10.17514 NA intron (NR_110596, intron 17 of 19) intron (NR_110596, intron 17 of 19) -82484 NM_031435 83591 Hs.245798 NM_031435 HPRD:10896 THAP2 - THAP domain containing, apoptosis associated protein 2 protein-coding 13-PTNLD9-TUMOR_peak_27475 chr2 86559981 86560119 + 10.17514 NA intron (NM_001164730, intron 1 of 6) intron (NM_001164730, intron 1 of 6) 4727 NM_022912 65055 Hs.368884 NM_022912 HPRD:07810 REEP1 C2orf23|HMN5B|SPG31 receptor accessory protein 1 protein-coding 13-PTNLD9-TUMOR_peak_15510 chr14 34505007 34505149 + 10.17514 NA Intergenic Intergenic -84794 NM_022073 112399 Hs.135507 NM_022073 HPRD:06972 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia-inducible factor 3 protein-coding 13-PTNLD9-TUMOR_peak_45137 chr6 44119673 44119843 + 10.17514 NA intron (NM_018426, intron 19 of 23) CpG-22191 -6790 NM_007058 11131 Hs.225953 NM_007058 HPRD:05315 CAPN11 calpain11 calpain 11 protein-coding 13-PTNLD9-TUMOR_peak_37999 chr4 11507214 11507369 + 10.17514 NA Intergenic Intergenic -76754 NM_005114 9957 Hs.507348 NM_005114 HS3ST1 3OST|3OST1 heparan sulfate (glucosamine) 3-O-sulfotransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_50062 chr8 10510557 10510730 + 10.17514 NA intron (NM_178857, intron 1 of 3) intron (NM_178857, intron 1 of 3) 1974 NM_178857 94137 Hs.33538 NM_178857 HPRD:10546 RP1L1 DCDC4B retinitis pigmentosa 1-like 1 protein-coding 13-PTNLD9-TUMOR_peak_10428 chr11 68899160 68899330 + 10.17514 NA Intergenic Intergenic 39785 NR_104161 338694 Hs.564235 NR_104161 ENSG00000261070 LOC338694 - uncharacterized LOC338694 ncRNA 13-PTNLD9-TUMOR_peak_18541 chr16 12272141 12272361 + 10.17514 NA intron (NM_032167, intron 13 of 20) intron (NM_032167, intron 13 of 20) 201649 NM_032167 92017 Hs.458401 NM_032167 HPRD:17437 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 13-PTNLD9-TUMOR_peak_2112 chr1 67036011 67036124 + 10.17514 NA intron (NM_032291, intron 1 of 24) intron (NM_032291, intron 1 of 24) 36242 NM_032291 84251 Hs.132121 NM_032291 HPRD:10910 SGIP1 - SH3-domain GRB2-like (endophilin) interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_22436 chr18 2139787 2139893 + 10.17514 NA Intergenic L4|LINE|RTE 431649 NM_022840 64863 Hs.126888 NM_022840 HPRD:14390 METTL4 HsT661 methyltransferase like 4 protein-coding 13-PTNLD9-TUMOR_peak_4203 chr1 163041724 163041882 + 10.17514 NA 5' UTR (NM_001113380, exon 1 of 5) 5' UTR (NM_001113380, exon 1 of 5) 108 NM_001113380 5999 Hs.386726 NM_005613 HPRD:03947 RGS4 RGP4|SCZD9 regulator of G-protein signaling 4 protein-coding 13-PTNLD9-TUMOR_peak_41824 chr5 117724293 117724467 + 10.17514 NA intron (NR_104610, intron 9 of 9) L1PA3|LINE|L1 106111 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LOC100505811 - uncharacterized LOC100505811 ncRNA 13-PTNLD9-TUMOR_peak_41929 chr5 125874868 125875032 + 10.17514 NA Intergenic Intergenic 56132 NM_001182 501 Hs.483239 NM_001182 HPRD:00124 ALDH7A1 ATQ1|EPD|PDE aldehyde dehydrogenase 7 family, member A1 protein-coding 13-PTNLD9-TUMOR_peak_8352 chr10 113544376 113544562 + 10.17514 NA Intergenic Intergenic 399068 NM_001244949 57678 Hs.42586 NM_020918 HPRD:03865 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 13-PTNLD9-TUMOR_peak_9413 chr11 31667854 31668041 + 10.17514 NA intron (NM_019040, intron 7 of 9) intron (NM_019040, intron 7 of 9) 136671 NM_019040 26610 Hs.175534 NM_019040 HPRD:07377 ELP4 AN|C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1|hELP4 elongator acetyltransferase complex subunit 4 protein-coding 13-PTNLD9-TUMOR_peak_17866 chr15 85122736 85122912 + 10.17514 NA non-coding (NR_038274, exon 4 of 4) non-coding (NR_038274, exon 4 of 4) 8459 NR_038273 100506874 Hs.150824 NR_038273 LINC00933 - long intergenic non-protein coding RNA 933 ncRNA 13-PTNLD9-TUMOR_peak_45957 chr6 116989780 116990048 + 10.17514 NA promoter-TSS (NM_145062) promoter-TSS (NM_145062) 59 NM_145062 221302 Hs.29857 NM_145062 HPRD:12840 ZUFSP C6orf113|dJ412I7.3 zinc finger with UFM1-specific peptidase domain protein-coding 13-PTNLD9-TUMOR_peak_32875 chr22 22337157 22337315 + 10.17514 NA promoter-TSS (NM_003935) promoter-TSS (NM_003935) 4 NM_001282112 8940 Hs.436401 NM_003935 HPRD:04662 TOP3B TOP3B1 topoisomerase (DNA) III beta protein-coding 13-PTNLD9-TUMOR_peak_31814 chr20 62262971 62263112 + 10.17461 NA Intergenic LTR39|LTR|ERV1 -4660 NM_012384 26205 Hs.473286 NM_012384 HPRD:16245 GMEB2 P79PIF|PIF79 glucocorticoid modulatory element binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_5857 chr1 233243504 233243659 + 10.17461 NA intron (NM_014801, intron 21 of 33) MER41A|LTR|ERV1 157211 NM_032324 84284 Hs.642715 NM_032324 NTPCR C1orf57|HCR-NTPase nucleoside-triphosphatase, cancer-related protein-coding 13-PTNLD9-TUMOR_peak_9510 chr11 34523061 34523333 + 10.17225 NA intron (NM_001422, intron 2 of 6) intron (NM_001422, intron 2 of 6) 10149 NM_001243081 2001 Hs.11713 NM_001422 HPRD:05525 ELF5 ESE2 E74-like factor 5 (ets domain transcription factor) protein-coding 13-PTNLD9-TUMOR_peak_51284 chr8 90996318 90996974 + 10.17225 NA intron (NM_002485, intron 1 of 15) CpG 253 NM_002485 4683 Hs.492208 NM_002485 HPRD:04050 NBN AT-V1|AT-V2|ATV|NBS|NBS1|P95 nibrin protein-coding 13-PTNLD9-TUMOR_peak_16132 chr14 69340194 69340365 + 10.17225 NA TTS (NM_001130005) TTS (NM_001130005) -77319 NM_001244701 677 Hs.85155 NM_004926 HPRD:03041 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein-like 1 protein-coding 13-PTNLD9-TUMOR_peak_19948 chr16 84764153 84764360 + 10.17225 NA intron (NM_001272075, intron 2 of 14) intron (NM_001272075, intron 2 of 14) 30701 NR_073578 9100 Hs.136778 NM_005153 HPRD:07029 USP10 UBPO ubiquitin specific peptidase 10 protein-coding 13-PTNLD9-TUMOR_peak_5107 chr1 203612353 203612663 + 10.17225 NA intron (NM_001684, intron 1 of 20) intron (NM_001684, intron 1 of 20) 16593 NM_001684 493 Hs.343522 NM_001684 HPRD:00159 ATP2B4 ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x ATPase, Ca++ transporting, plasma membrane 4 protein-coding 13-PTNLD9-TUMOR_peak_9917 chr11 58442265 58442390 + 10.17225 NA Intergenic MER61A|LTR|ERV1 52181 NM_000614 1270 Hs.524920 NM_000614 HPRD:00347 CNTF HCNTF ciliary neurotrophic factor protein-coding 13-PTNLD9-TUMOR_peak_48605 chr7 101441615 101441787 + 10.17225 NA Intergenic AluSx3|SINE|Alu -17483 NM_001913 1523 Hs.191482 NM_001913 HPRD:00295 CUX1 CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GOLIM6|Nbla10317|p100|p110|p200|p75 cut-like homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_35762 chr3 127005521 127005760 + 10.17225 NA Intergenic HAL1|LINE|L1 93666 NM_001007534 285311 Hs.591284 NM_001007534 HPRD:16949 C3orf56 - chromosome 3 open reading frame 56 protein-coding 13-PTNLD9-TUMOR_peak_16030 chr14 65174531 65174643 + 10.17225 NA intron (NM_015549, intron 1 of 14) MIRb|SINE|MIR 3394 NM_015549 26030 Hs.509637 NM_015549 HPRD:17861 PLEKHG3 ARHGEF43|KIAA0599 pleckstrin homology domain containing, family G (with RhoGef domain) member 3 protein-coding 13-PTNLD9-TUMOR_peak_43969 chr6 17033286 17033413 + 10.17225 NA Intergenic Intergenic -69140 NM_001190766 401236 Hs.677399 NM_001190766 ENSG00000230873 STMND1 - stathmin domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_23334 chr18 57447233 57447495 + 10.17225 NA Intergenic Intergenic -82720 NM_133459 147372 Hs.34333 NM_133459 HPRD:08703 CCBE1 - collagen and calcium binding EGF domains 1 protein-coding 13-PTNLD9-TUMOR_peak_362 chr1 10255804 10255970 + 10.17225 NA Intergenic AluSc|SINE|Alu -14877 NM_183416 23095 Hs.97858 NM_015074 HPRD:05818 KIF1B CMT2|CMT2A|CMT2A1|HMSNII|KLP|NBLST1 kinesin family member 1B protein-coding 13-PTNLD9-TUMOR_peak_422 chr1 11724166 11724359 + 10.17225 NA TTS (NM_183413) TTS (NM_183413) 112 NM_018438 26270 Hs.464419 NM_018438 HPRD:07291 FBXO6 FBG2|FBS2|FBX6|Fbx6b F-box protein 6 protein-coding 13-PTNLD9-TUMOR_peak_23823 chr19 7985986 7986179 + 10.16872 NA intron (NR_030717, intron 1 of 4) intron (NR_030717, intron 1 of 4) 215 NR_030717 6618 Hs.631860 NM_003083 HPRD:05464 SNAPC2 PTFDELTA|SNAP45 small nuclear RNA activating complex, polypeptide 2, 45kDa protein-coding 13-PTNLD9-TUMOR_peak_10390 chr11 67780696 67780940 + 10.15474 NA intron (NM_001030010, intron 1 of 8) intron (NM_001030010, intron 1 of 8) 3043 NM_001290058 221 Hs.523841 NM_000694 HPRD:02716 ALDH3B1 ALDH4|ALDH7 aldehyde dehydrogenase 3 family, member B1 protein-coding 13-PTNLD9-TUMOR_peak_52397 chr8 143859225 143859350 + 10.15368 NA promoter-TSS (NM_177477) promoter-TSS (NM_177477) 352 NM_023946 66004 Hs.158665 NM_023946 HPRD:16201 LYNX1 SLURP2 Ly6/neurotoxin 1 protein-coding 13-PTNLD9-TUMOR_peak_24867 chr19 38422626 38423254 + 10.15368 NA intron (NM_015073, intron 1 of 21) intron (NM_015073, intron 1 of 21) 25079 NM_015073 23094 Hs.655502 NM_015073 HPRD:18755 SIPA1L3 SPAL3 signal-induced proliferation-associated 1 like 3 protein-coding 13-PTNLD9-TUMOR_peak_24712 chr19 34664106 34664282 + 10.15368 NA intron (NM_015578, intron 1 of 9) intron (NM_015578, intron 1 of 9) 842 NM_001114093 26065 Hs.744009 NM_015578 HPRD:12697 LSM14A C19orf13|FAM61A|RAP55|RAP55A LSM14A, SCD6 homolog A (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_27460 chr2 86113813 86113982 + 10.14600 NA intron (NM_003896, intron 1 of 6) intron (NM_003896, intron 1 of 6) 2260 NM_003896 8869 Hs.415117 NM_003896 HPRD:05098 ST3GAL5 SATI|SIAT9|SIATGM3S|ST3GalV ST3 beta-galactoside alpha-2,3-sialyltransferase 5 protein-coding 13-PTNLD9-TUMOR_peak_27440 chr2 85804893 85805173 + 10.14600 NA intron (NM_003761, intron 1 of 2) intron (NM_003761, intron 1 of 2) 419 NM_003761 8673 Hs.714302 NM_003761 HPRD:04415 VAMP8 EDB|VAMP-8 vesicle-associated membrane protein 8 protein-coding 13-PTNLD9-TUMOR_peak_24068 chr19 12807418 12807556 + 10.14600 NA promoter-TSS (NM_032301) promoter-TSS (NM_032301) -32 NM_032301 84261 Hs.515154 NM_032301 HPRD:12361 FBXW9 Fbw9 F-box and WD repeat domain containing 9 protein-coding 13-PTNLD9-TUMOR_peak_749 chr1 26362995 26363257 + 10.14600 NA TTS (NM_004455) TTS (NM_004455) 9478 NM_001004434 7780 Hs.143545 NM_032513 HPRD:18057 SLC30A2 PP12488|TNZD|ZNT2|ZnT-2 solute carrier family 30 (zinc transporter), member 2 protein-coding 13-PTNLD9-TUMOR_peak_14575 chr13 34217030 34217231 + 10.14600 NA intron (NM_001243476, intron 3 of 17) intron (NM_001243476, intron 3 of 17) 33842 NM_001243476 90627 Hs.156551 NM_052851 HPRD:11607 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR-related lipid transfer (START) domain containing 13 protein-coding 13-PTNLD9-TUMOR_peak_33745 chr3 10799028 10799378 + 10.14600 NA Intergenic Intergenic 6674 NR_027102 285370 Hs.157613 NR_027102 ENSG00000226567 LINC00606 - long intergenic non-protein coding RNA 606 ncRNA 13-PTNLD9-TUMOR_peak_22872 chr18 29093624 29093804 + 10.14600 NA intron (NM_001943, intron 1 of 14) L1MD3|LINE|L1 15687 NM_001943 1829 Hs.412597 NM_001943 HPRD:00516 DSG2 ARVC10|ARVD10|CDHF5|CMD1BB|HDGC desmoglein 2 protein-coding 13-PTNLD9-TUMOR_peak_3051 chr1 118727425 118727557 + 10.14600 NA intron (NM_206996, intron 1 of 48) intron (NM_206996, intron 1 of 48) 357 NM_206996 200162 Hs.528821 NM_206996 HPRD:10146 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 13-PTNLD9-TUMOR_peak_44745 chr6 34855788 34855920 + 10.14372 NA promoter-TSS (NM_005643) promoter-TSS (NM_005643) -6 NM_005643 6882 Hs.112444 NM_005643 HPRD:15980 TAF11 MGC:15243|TAF2I|TAFII28 TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa protein-coding 13-PTNLD9-TUMOR_peak_36008 chr3 134067493 134067683 + 10.14361 NA Intergenic Intergenic 19116 NR_106885 102466744 NR_106885 MIR6827 hsa-mir-6827 microRNA 6827 ncRNA 13-PTNLD9-TUMOR_peak_1468 chr1 43838843 43838985 + 10.14298 NA Intergenic Intergenic -5169 NM_001256402 64834 Hs.25597 NM_022821 HPRD:10935 ELOVL1 Ssc1 ELOVL fatty acid elongase 1 protein-coding 13-PTNLD9-TUMOR_peak_29861 chr2 220109985 220110359 + 10.14298 NA promoter-TSS (NM_024506) promoter-TSS (NM_024506) -20 NM_001008910 8576 Hs.153003 NM_003691 HPRD:05281 STK16 KRCT|MPSK|PKL12|TSF1 serine/threonine kinase 16 protein-coding 13-PTNLD9-TUMOR_peak_36006 chr3 134053519 134053730 + 10.13489 NA Intergenic Intergenic 33080 NR_106885 102466744 NR_106885 MIR6827 hsa-mir-6827 microRNA 6827 ncRNA 13-PTNLD9-TUMOR_peak_29791 chr2 217400239 217400429 + 10.13364 NA Intergenic Intergenic 36814 NM_000998 6168 Hs.433701 NM_000998 RPL37A L37A ribosomal protein L37a protein-coding 13-PTNLD9-TUMOR_peak_20885 chr17 34091210 34091433 + 10.13364 NA exon (NM_145272, exon 2 of 3) exon (NM_145272, exon 2 of 3) 3405 NM_145272 146853 Hs.127194 NM_145272 HPRD:11239 C17orf50 - chromosome 17 open reading frame 50 protein-coding 13-PTNLD9-TUMOR_peak_23133 chr18 46399787 46399968 + 10.13364 NA Intergenic MIRb|SINE|MIR 69300 NM_001190823 4092 Hs.465087 NM_005904 HPRD:04241 SMAD7 CRCS3|MADH7|MADH8 SMAD family member 7 protein-coding 13-PTNLD9-TUMOR_peak_53720 chr9 80733946 80734223 + 10.13364 NA Intergenic LTR16C|LTR|ERVL -87719 NM_002072 2776 Hs.269782 NM_002072 GNAQ CMC1|G-ALPHA-q|GAQ|SWS guanine nucleotide binding protein (G protein), q polypeptide protein-coding 13-PTNLD9-TUMOR_peak_45488 chr6 73279934 73280105 + 10.13364 NA Intergenic L1PA2|LINE|L1 -51552 NM_001160132 56479 Hs.445324 NM_019842 HPRD:16241 KCNQ5 Kv7.5 potassium voltage-gated channel, KQT-like subfamily, member 5 protein-coding 13-PTNLD9-TUMOR_peak_13596 chr12 102288582 102288908 + 10.13364 NA intron (NM_018370, intron 1 of 6) intron (NM_018370, intron 1 of 6) 17640 NM_018370 55332 Hs.525634 NM_018370 HPRD:07743 DRAM1 DRAM DNA-damage regulated autophagy modulator 1 protein-coding 13-PTNLD9-TUMOR_peak_40530 chr5 32045184 32045299 + 10.13364 NA intron (NM_178140, intron 6 of 23) intron (NM_178140, intron 6 of 23) -108976 NR_036241 100422874 NR_036241 miRBase:MI0015887 MIR4279 - microRNA 4279 ncRNA 13-PTNLD9-TUMOR_peak_20209 chr17 909995 910391 + 10.12852 NA intron (NM_001256847, intron 7 of 7) CpG 9836 NM_013337 29928 Hs.745034 NM_013337 TIMM22 TEX4|TIM22 translocase of inner mitochondrial membrane 22 homolog (yeast) protein-coding 13-PTNLD9-TUMOR_peak_2417 chr1 90175563 90175762 + 10.12852 NA intron (NM_032270, intron 2 of 2) intron (NM_032270, intron 2 of 2) 77018 NM_032270 84230 Hs.412836 NM_032270 HPRD:13284 LRRC8C AD158|FAD158 leucine rich repeat containing 8 family, member C protein-coding 13-PTNLD9-TUMOR_peak_12146 chr12 12038240 12038373 + 10.12852 NA intron (NM_001987, intron 6 of 7) intron (NM_001987, intron 6 of 7) 40801 NR_046487 100873754 NR_046487 ENSG00000207449 RNU6-19P RNU6-19 RNA, U6 small nuclear 19, pseudogene snRNA 13-PTNLD9-TUMOR_peak_20237 chr17 1933980 1934094 + 10.12852 NA intron (NM_001383, intron 1 of 12) intron (NM_001383, intron 1 of 12) 606 NM_001383 1801 Hs.513856 NM_001383 HPRD:04634 DPH1 DPH2L|DPH2L1|OVCA1 diphthamide biosynthesis 1 protein-coding 13-PTNLD9-TUMOR_peak_29665 chr2 207866127 207866240 + 10.12852 NA Intergenic L1PA3|LINE|L1 61905 NM_173077 130749 Hs.684103 NM_173077 HPRD:07098 CPO - carboxypeptidase O protein-coding 13-PTNLD9-TUMOR_peak_6408 chr10 6791322 6791452 + 10.12852 NA Intergenic Intergenic 29755 NR_108074 100652997 Hs.255086 NR_108074 LINC00706 - long intergenic non-protein coding RNA 706 ncRNA 13-PTNLD9-TUMOR_peak_7948 chr10 88855138 88855382 + 10.12852 NA promoter-TSS (NM_005271) promoter-TSS (NM_005271) 307 NM_019054 54537 Hs.500419 NM_019054 HPRD:09944 FAM35A FAM35A1|bA163M19.1 family with sequence similarity 35, member A protein-coding 13-PTNLD9-TUMOR_peak_29720 chr2 210636454 210636602 + 10.12852 NA promoter-TSS (NM_032504) promoter-TSS (NM_032504) -189 NM_182587 285175 Hs.396201 NM_032504 HPRD:12809 UNC80 C2orf21|UNC-80 unc-80 homolog (C. elegans) protein-coding 13-PTNLD9-TUMOR_peak_33942 chr3 15555791 15556018 + 10.12852 NA intron (NM_005677, intron 1 of 16) MER5A|DNA|hAT-Charlie 7354 NM_005677 8292 Hs.146735 NM_005677 HPRD:04328 COLQ EAD collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase protein-coding 13-PTNLD9-TUMOR_peak_12351 chr12 26440626 26441185 + 10.12852 NA Intergenic Intergenic 92399 NM_005086 8082 Hs.183428 NM_005086 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 13-PTNLD9-TUMOR_peak_53798 chr9 86047234 86047444 + 10.12852 NA intron (NM_001244959, intron 1 of 14) intron (NM_001244959, intron 1 of 14) 35318 NM_001244960 257019 Hs.127535 NM_174938 HPRD:07402 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_24691 chr19 33784281 33784449 + 10.12852 NA Intergenic Intergenic 9105 NM_001287424 1050 Hs.76171 NM_004364 HPRD:00296 CEBPA C/EBP-alpha|CEBP CCAAT/enhancer binding protein (C/EBP), alpha protein-coding 13-PTNLD9-TUMOR_peak_46016 chr6 125710466 125710804 + 10.12852 NA Intergenic SVA_E|Other|Other -87353 NM_016063 51020 Hs.32826 NM_016063 HPRD:12897 HDDC2 C6orf74|NS5ATP2|dJ167O5.2 HD domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_45995 chr6 123793671 123793853 + 10.12852 NA TTS (NR_110844) TTS (NR_110844) 33013 NR_110844 101927990 Hs.660877 NR_110844 LOC101927990 - uncharacterized LOC101927990 ncRNA 13-PTNLD9-TUMOR_peak_25240 chr19 47792651 47792869 + 10.12852 NA Intergenic AluSz6|SINE|Alu 14618 NM_178511 255783 Hs.128690 NM_178511 ENSG00000257704 INAFM1 PRR24 InaF-motif containing 1 protein-coding 13-PTNLD9-TUMOR_peak_1852 chr1 54874060 54874195 + 10.12114 NA Intergenic Intergenic -2059 NM_018070 23648 Hs.476706 NM_018070 HPRD:09578 SSBP3 CSDP|SSDP|SSDP1 single stranded DNA binding protein 3 protein-coding 13-PTNLD9-TUMOR_peak_9110 chr11 12745398 12745692 + 10.12114 NA intron (NM_021961, intron 2 of 12) intron (NM_021961, intron 2 of 12) 49576 NM_021961 7003 Hs.655331 NM_021961 HPRD:01802 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain family member 1 (SV40 transcriptional enhancer factor) protein-coding 13-PTNLD9-TUMOR_peak_50644 chr8 38259097 38259363 + 10.12114 NA intron (NM_001286819, intron 6 of 10) intron (NM_001286819, intron 6 of 10) 14581 NM_001199660 137994 Hs.696457 NM_144652 HPRD:08060 LETM2 - leucine zipper-EF-hand containing transmembrane protein 2 protein-coding 13-PTNLD9-TUMOR_peak_3089 chr1 120529807 120530003 + 10.12114 NA intron (NM_024408, intron 4 of 33) intron (NM_024408, intron 4 of 33) 82412 NM_001200001 4853 Hs.487360 NM_024408 HPRD:02606 NOTCH2 AGS2|HJCYS|hN2 notch 2 protein-coding 13-PTNLD9-TUMOR_peak_24368 chr19 18111793 18112081 + 10.12114 NA promoter-TSS (NM_001025604) promoter-TSS (NM_001025604) -4 NM_001025604 27106 Hs.515249 NM_015683 HPRD:12492 ARRDC2 CLONE24945 arrestin domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_31211 chr20 44534376 44534538 + 10.12067 NA intron (NM_001242921, intron 6 of 13) MIRb|SINE|MIR 5176 NM_001242921 5360 Hs.439312 NM_006227 HPRD:01399 PLTP BPIFE|HDLCQ9 phospholipid transfer protein protein-coding 13-PTNLD9-TUMOR_peak_22904 chr18 32239708 32239867 + 10.12067 NA intron (NM_001128175, intron 1 of 11) intron (NM_001128175, intron 1 of 11) -50409 NM_032978 1837 Hs.643454 NM_001390 HPRD:03141 DTNA D18S892E|DRP3|DTN|DTN-A|LVNC1 dystrobrevin, alpha protein-coding 13-PTNLD9-TUMOR_peak_19518 chr16 65606215 65606349 + 10.12067 NA intron (NR_027755, intron 1 of 8) intron (NR_027755, intron 1 of 8) 3921 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 13-PTNLD9-TUMOR_peak_17671 chr15 75328634 75328922 + 10.12067 NA intron (NM_001301103, intron 2 of 3) intron (NM_001301103, intron 2 of 3) -6832 NM_001301104 60490 Hs.458922 NM_021823 HPRD:14377 PPCDC PPC-DC|coaC phosphopantothenoylcysteine decarboxylase protein-coding 13-PTNLD9-TUMOR_peak_26034 chr2 9293885 9294117 + 10.12067 NA Intergenic Intergenic -52893 NM_001135191 8853 Hs.555902 NM_003887 HPRD:04820 ASAP2 AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 protein-coding 13-PTNLD9-TUMOR_peak_47785 chr7 68149630 68149784 + 10.12067 NA Intergenic Intergenic 664467 NR_120514 102723427 Hs.583491 NR_120514 LOC102723427 - uncharacterized LOC102723427 ncRNA 13-PTNLD9-TUMOR_peak_55526 chrX 10724556 10724692 + 10.12067 NA intron (NM_033290, intron 1 of 9) intron (NM_033290, intron 1 of 9) -78845 NM_001098624 4281 Hs.27695 NM_000381 HPRD:02047 MID1 BBBG1|FXY|GBBB1|MIDIN|OGS1|OS|OSX|RNF59|TRIM18|XPRF|ZNFXY midline 1 protein-coding 13-PTNLD9-TUMOR_peak_46395 chr6 157695659 157695977 + 10.12067 NA Intergenic CpG 49473 NM_018452 729515 Hs.157212 NM_018452 ENSG00000215712 TMEM242 BM033|C6orf35 transmembrane protein 242 protein-coding 13-PTNLD9-TUMOR_peak_27939 chr2 107707759 107707905 + 10.12067 NA Intergenic Intergenic -204269 NM_032528 84620 Hs.98265 NM_032528 HPRD:12237 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactosamide alpha-2,6-sialyltranferase 2 protein-coding 13-PTNLD9-TUMOR_peak_18348 chr16 4297468 4297770 + 10.12067 NA intron (NR_039999, intron 2 of 2) LTR3B|LTR|ERVK -5538 NM_001098814 6345 Hs.10041 NM_001098814 ENSG00000185739 SRL - sarcalumenin protein-coding 13-PTNLD9-TUMOR_peak_47827 chr7 71545531 71545656 + 10.12067 NA intron (NM_031468, intron 4 of 6) intron (NM_031468, intron 4 of 6) 256615 NM_001017440 83698 Hs.592750 NM_031468 HPRD:06209 CALN1 CABP8 calneuron 1 protein-coding 13-PTNLD9-TUMOR_peak_46549 chr6 168408233 168408692 + 10.12067 NA Intergenic LTR51|LTR|ERV1 -10091 NM_030615 3834 Hs.150013 NM_005355 HPRD:04818 KIF25 KNSL3 kinesin family member 25 protein-coding 13-PTNLD9-TUMOR_peak_29160 chr2 175869880 175870077 + 10.12067 NA promoter-TSS (NM_001822) promoter-TSS (NM_001822) 3 NM_001822 1123 Hs.380138 NM_001822 HPRD:00319 CHN1 ARHGAP2|CHN|DURS2|NC|RHOGAP2 chimerin 1 protein-coding 13-PTNLD9-TUMOR_peak_26265 chr2 20490923 20491048 + 10.12067 NA intron (NM_015317, intron 9 of 20) intron (NM_015317, intron 9 of 20) 36162 NM_001282791 23369 Hs.467824 NM_015317 HPRD:09527 PUM2 PUMH2|PUML2 pumilio RNA-binding family member 2 protein-coding 13-PTNLD9-TUMOR_peak_25269 chr19 48372298 48372404 + 10.12067 NA Intergenic Intergenic 17303 NM_003167 6822 Hs.515835 NM_003167 HPRD:00502 SULT2A1 DHEA-ST|DHEAS|HST|ST2|ST2A1|ST2A3|STD|hSTa sulfotransferase family, cytosolic, 2A, dehydroepiandrosterone (DHEA)-preferring, member 1 protein-coding 13-PTNLD9-TUMOR_peak_15997 chr14 64109051 64109217 + 10.11036 NA promoter-TSS (NM_080666) promoter-TSS (NM_080666) -493 NM_080666 112840 Hs.655666 NM_080666 WDR89 C14orf150 WD repeat domain 89 protein-coding 13-PTNLD9-TUMOR_peak_7732 chr10 74114722 74114853 + 10.10727 NA 5' UTR (NM_017626, exon 1 of 9) 5' UTR (NM_017626, exon 1 of 9) 120 NM_001002762 54788 Hs.500013 NM_017626 HPRD:07086 DNAJB12 DJ10 DnaJ (Hsp40) homolog, subfamily B, member 12 protein-coding 13-PTNLD9-TUMOR_peak_13771 chr12 109301657 109301933 + 10.10727 NA TTS (NM_018711) TTS (NM_018711) 27938 NM_001917 1610 Hs.113227 NM_001917 HPRD:15917 DAO DAAO|DAMOX|OXDA D-amino-acid oxidase protein-coding 13-PTNLD9-TUMOR_peak_22142 chr17 76147489 76147725 + 10.10727 NA intron (NM_001163075, intron 2 of 4) MLT1C|LTR|ERVL-MaLR 5173 NM_001163075 100141515 Hs.633034 NM_001163075 ENSG00000187997 C17orf99 - chromosome 17 open reading frame 99 protein-coding 13-PTNLD9-TUMOR_peak_19296 chr16 49788844 49789024 + 10.10727 NA intron (NM_015069, intron 2 of 7) intron (NM_015069, intron 2 of 7) 67715 NM_015069 23090 Hs.530930 NM_015069 HPRD:05189 ZNF423 Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104 zinc finger protein 423 protein-coding 13-PTNLD9-TUMOR_peak_76 chr1 1280297 1280449 + 10.10727 NA intron (NM_004421, intron 1 of 14) intron (NM_004421, intron 1 of 14) 4119 NM_004421 1855 Hs.731450 NM_004421 HPRD:03220 DVL1 DVL|DVL1L1|DVL1P1 dishevelled segment polarity protein 1 protein-coding 13-PTNLD9-TUMOR_peak_51387 chr8 101170655 101170868 + 10.10727 NA 5' UTR (NM_003114, exon 1 of 19) 5' UTR (NM_003114, exon 1 of 19) 198 NM_003114 6674 Hs.591866 NM_003114 HPRD:04548 SPAG1 CILD28|CT140|HSD-3.8|SP75|TPIS sperm associated antigen 1 protein-coding 13-PTNLD9-TUMOR_peak_35972 chr3 133266611 133266813 + 10.10727 NA Intergenic Intergenic -25722 NM_001134422 55573 Hs.518265 NM_017548 HPRD:13627 CDV3 H41 CDV3 homolog (mouse) protein-coding 13-PTNLD9-TUMOR_peak_50286 chr8 22298667 22299019 + 10.10727 NA 5' UTR (NM_001243974, exon 1 of 15) 5' UTR (NM_001243974, exon 1 of 15) 360 NM_001243974 5533 Hs.731683 NM_005605 HPRD:00236 PPP3CC CALNA3|CNA3|PP2Bgamma protein phosphatase 3, catalytic subunit, gamma isozyme protein-coding 13-PTNLD9-TUMOR_peak_43356 chr5 180645183 180645419 + 10.09626 NA Intergenic tRNA-Val-GTY|tRNA|tRNA 4332 NR_039781 100616342 NR_039781 miRBase:MI0017265 MIR4638 - microRNA 4638 ncRNA 13-PTNLD9-TUMOR_peak_9678 chr11 45921735 45921944 + 10.08803 NA exon (NM_005456, exon 3 of 12) exon (NM_005456, exon 3 of 12) 6994 NM_001080446 143678 Hs.193741 NM_001080446 ENSG00000234776 C11orf94 - chromosome 11 open reading frame 94 protein-coding 13-PTNLD9-TUMOR_peak_26276 chr2 20784028 20784227 + 10.08803 NA Intergenic Intergenic 8181 NR_046836 100874343 Hs.591546 NR_046836 ENSG00000231948 HS1BP3-IT1 - HS1BP3 intronic transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_54041 chr9 96906689 96907034 + 10.08803 NA Intergenic L2b|LINE|L2 -31378 NR_029476 406881 NR_029476 miRBase:MI0000060 MIRLET7A1 LET7A1|MIRNLET7A1|let-7a-1 microRNA let-7a-1 ncRNA 13-PTNLD9-TUMOR_peak_3078 chr1 120254427 120254614 + 10.08803 NA 5' UTR (NM_006623, exon 1 of 12) 5' UTR (NM_006623, exon 1 of 12) 101 NM_006623 26227 Hs.487296 NM_006623 HPRD:06047 PHGDH 3-PGDH|3PGDH|HEL-S-113|NLS|PDG|PGAD|PGD|PGDH|PHGDHD|SERA phosphoglycerate dehydrogenase protein-coding 13-PTNLD9-TUMOR_peak_33086 chr22 30603004 30603313 + 10.08699 NA Intergenic Intergenic 39682 NM_001257135 3976 Hs.2250 NM_002309 HPRD:08869 LIF CDF|DIA|HILDA|MLPLI leukemia inhibitory factor protein-coding 13-PTNLD9-TUMOR_peak_28302 chr2 121852919 121853063 + 10.08542 NA Intergenic Intergenic 189787 NM_014553 29842 Hs.156471 NM_014553 HPRD:18175 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2-like 1 protein-coding 13-PTNLD9-TUMOR_peak_6843 chr10 30971400 30971602 + 10.08542 NA Intergenic Intergenic -9702 NR_036438 645954 Hs.408581 NR_036438 ENSG00000234814 SVILP1 - supervillin pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_55767 chrX 45629677 45629808 + 10.08542 NA Intergenic Intergenic -23212 NR_029636 407007 NR_029636 miRBase:MI0000299 MIR222 MIRN222|miRNA222|mir-222 microRNA 222 ncRNA 13-PTNLD9-TUMOR_peak_2710 chr1 108212798 108212931 + 10.08542 NA intron (NM_006113, intron 19 of 26) intron (NM_006113, intron 19 of 26) 18262 NM_001079874 10451 Hs.267659 NM_006113 HPRD:05706 VAV3 - vav 3 guanine nucleotide exchange factor protein-coding 13-PTNLD9-TUMOR_peak_54747 chr9 126695840 126696011 + 10.08542 NA Intergenic MLT1J|LTR|ERVL-MaLR -3508 NM_024820 57706 Hs.744995 NM_020946 HPRD:17221 DENND1A FAM31A|KIAA1608 DENN/MADD domain containing 1A protein-coding 13-PTNLD9-TUMOR_peak_11425 chr11 120187628 120187868 + 10.08542 NA intron (NM_014352, intron 11 of 12) intron (NM_014352, intron 11 of 12) -8090 NM_174926 219902 Hs.643516 NM_174926 HPRD:14461 TMEM136 - transmembrane protein 136 protein-coding 13-PTNLD9-TUMOR_peak_12322 chr12 25486761 25487107 + 10.08542 NA Intergenic Intergenic -83069 NM_033360 3845 Hs.505033 NM_004985 HPRD:01817 KRAS C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|KI-RAS|KRAS1|KRAS2|NS|NS3|RASK2 Kirsten rat sarcoma viral oncogene homolog protein-coding 13-PTNLD9-TUMOR_peak_35853 chr3 129132689 129132838 + 10.08542 NA intron (NM_207307, intron 4 of 8) Charlie20a|DNA|hAT-Charlie -14481 NR_003111 132241 Hs.477537 NR_003111 ENSG00000251474 RPL32P3 - ribosomal protein L32 pseudogene 3 pseudo 13-PTNLD9-TUMOR_peak_2027 chr1 62822160 62822374 + 10.08542 NA Intergenic MLT1I|LTR|ERVL-MaLR -37184 NM_181712 163782 Hs.283398 NM_181712 HPRD:14109 KANK4 ANKRD38|dJ1078M7.1 KN motif and ankyrin repeat domains 4 protein-coding 13-PTNLD9-TUMOR_peak_15459 chr14 31858072 31858196 + 10.08542 NA exon (NM_015473, exon 7 of 36) exon (NM_015473, exon 7 of 36) 31654 NM_015473 25938 Hs.744979 NM_015473 ENSG00000129493 HEATR5A C14orf125 HEAT repeat containing 5A protein-coding 13-PTNLD9-TUMOR_peak_28397 chr2 128991126 128991331 + 10.08542 NA Intergenic CpG 84943 NM_004807 9394 Hs.512841 NM_004807 HPRD:07274 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_5366 chr1 212732226 212732441 + 10.08542 NA Intergenic CpG -6343 NM_001030287 467 Hs.460 NM_001674 HPRD:04395 ATF3 - activating transcription factor 3 protein-coding 13-PTNLD9-TUMOR_peak_33965 chr3 16215950 16216146 + 10.08542 NA promoter-TSS (NM_054110) promoter-TSS (NM_054110) -136 NM_054110 117248 Hs.411308 NM_054110 HPRD:13563 GALNT15 GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5 polypeptide N-acetylgalactosaminyltransferase 15 protein-coding 13-PTNLD9-TUMOR_peak_38772 chr4 84672755 84673038 + 10.08542 NA Intergenic ERVL-int|LTR|ERVL 215426 NM_032717 84803 Hs.99196 NM_032717 HPRD:14417 AGPAT9 AGPAT 10|AGPAT8|GPAT3|LPAAT-theta|MAG1 1-acylglycerol-3-phosphate O-acyltransferase 9 protein-coding 13-PTNLD9-TUMOR_peak_15781 chr14 53307804 53307913 + 10.08542 NA Intergenic Intergenic -49472 NM_198066 64841 Hs.478025 NM_198066 HPRD:17046 GNPNAT1 GNPNAT|Gpnat1 glucosamine-phosphate N-acetyltransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_18228 chr16 2107047 2107304 + 10.08542 NA exon (NM_001114382, exon 9 of 41) exon (NM_001114382, exon 9 of 41) 9185 NM_001114382 7249 Hs.90303 NM_000548 HPRD:01850 TSC2 LAM|PPP1R160|TSC4 tuberous sclerosis 2 protein-coding 13-PTNLD9-TUMOR_peak_31574 chr20 52403611 52403788 + 10.08542 NA Intergenic MER20|DNA|hAT-Charlie 88549 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_47912 chr7 73446584 73446721 + 10.08542 NA intron (NM_001278939, intron 1 of 33) L2c|LINE|L2 4533 NM_001278915 2006 Hs.647061 NM_000501 HPRD:00556 ELN SVAS|WBS|WS elastin protein-coding 13-PTNLD9-TUMOR_peak_16053 chr14 65823176 65823346 + 10.08542 NA Intergenic Intergenic -21360 NR_039857 100616176 NR_039857 miRBase:MI0017341 MIR4708 - microRNA 4708 ncRNA 13-PTNLD9-TUMOR_peak_18905 chr16 28956943 28957108 + 10.08542 NA Intergenic Intergenic -5293 NM_032815 84901 Hs.513470 NM_032815 HPRD:10971 NFATC2IP ESC2|NIP45|RAD60 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 interacting protein protein-coding 13-PTNLD9-TUMOR_peak_16932 chr15 31316584 31316745 + 10.08542 NA intron (NM_001252024, intron 27 of 27) intron (NM_001252024, intron 27 of 27) -32857 NM_017762 54893 Hs.30141 NM_017762 HPRD:07895 MTMR10 - myotubularin related protein 10 protein-coding 13-PTNLD9-TUMOR_peak_29744 chr2 213228895 213229019 + 10.08542 NA intron (NM_005235, intron 1 of 27) intron (NM_005235, intron 1 of 27) 62127 NR_031643 100313771 NR_031643 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 13-PTNLD9-TUMOR_peak_19853 chr16 80334869 80335050 + 10.08542 NA intron (NR_120307, intron 2 of 5) L1MB5|LINE|L1 -239895 NM_130897 83657 Hs.98849 NM_130897 HPRD:06204 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein, light chain, roadblock-type 2 protein-coding 13-PTNLD9-TUMOR_peak_52437 chr8 144594886 144595012 + 10.08542 NA intron (NM_015117, intron 3 of 11) intron (NM_015117, intron 3 of 11) 28671 NM_015117 23144 Hs.521915 NM_015117 HPRD:15697 ZC3H3 ZC3HDC3 zinc finger CCCH-type containing 3 protein-coding 13-PTNLD9-TUMOR_peak_41549 chr5 95095988 95096131 + 10.08542 NA intron (NM_014899, intron 6 of 11) intron (NM_014899, intron 6 of 11) 29209 NM_014899 22836 Hs.445030 NM_014899 HPRD:09557 RHOBTB3 - Rho-related BTB domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_26781 chr2 45870898 45871020 + 10.08542 NA Intergenic CpG -8084 NM_005400 5581 Hs.580351 NM_005400 HPRD:01500 PRKCE PKCE|nPKC-epsilon protein kinase C, epsilon protein-coding 13-PTNLD9-TUMOR_peak_7857 chr10 81058593 81058734 + 10.08542 NA intron (NM_020338, intron 15 of 24) intron (NM_020338, intron 15 of 24) -48557 NM_005729 10105 Hs.381072 NM_005729 HPRD:06839 PPIF CYP3|CyP-M|Cyp-D|CypD peptidylprolyl isomerase F protein-coding 13-PTNLD9-TUMOR_peak_9353 chr11 27013580 27013802 + 10.08542 NA Intergenic Intergenic -1937 NM_203371 387758 Hs.712718 NM_203371 HPRD:17366 FIBIN - fin bud initiation factor homolog (zebrafish) protein-coding 13-PTNLD9-TUMOR_peak_56318 chrX 106898635 106898879 + 10.08542 NA Intergenic Intergenic 27103 NM_002764 5631 Hs.56 NM_002764 HPRD:02413 PRPS1 ARTS|CMTX5|DFN2|DFNX1|PPRibP|PRS-I|PRSI phosphoribosyl pyrophosphate synthetase 1 protein-coding 13-PTNLD9-TUMOR_peak_15087 chr13 109895777 109896282 + 10.08542 NA Intergenic Intergenic -76378 NR_047700 100885782 Hs.655942 NR_047700 ENSG00000236242 MYO16-AS1 - MYO16 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_43326 chr5 179868697 179868950 + 10.08542 NA Intergenic Intergenic -52594 NM_015455 57472 Hs.608380 NM_015455 HPRD:12341 CNOT6 CCR4|Ccr4a CCR4-NOT transcription complex, subunit 6 protein-coding 13-PTNLD9-TUMOR_peak_25684 chr19 55888086 55888301 + 10.08542 NA promoter-TSS (NM_139172) promoter-TSS (NM_139172) -11 NM_139172 147744 Hs.590943 NM_139172 HPRD:14373 TMEM190 MDAC1 transmembrane protein 190 protein-coding 13-PTNLD9-TUMOR_peak_37976 chr4 10057562 10057715 + 10.08375 NA Intergenic Intergenic -15766 NM_001001290 56606 Hs.656895 NM_020041 HPRD:05848 SLC2A9 GLUT9|GLUTX|UAQTL2|URATv1 solute carrier family 2 (facilitated glucose transporter), member 9 protein-coding 13-PTNLD9-TUMOR_peak_29550 chr2 202122352 202122701 + 10.08375 NA promoter-TSS (NM_001080125) promoter-TSS (NM_001080125) -228 NM_001080125 841 Hs.599762 NM_001228 HPRD:03459 CASP8 ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5 caspase 8, apoptosis-related cysteine peptidase protein-coding 13-PTNLD9-TUMOR_peak_1562 chr1 45279671 45279799 + 10.07887 NA TTS (NM_001136537) TTS (NM_001136537) 5581 NM_001136537 149478 Hs.632400 NM_001136537 ENSG00000222009 BTBD19 - BTB (POZ) domain containing 19 protein-coding 13-PTNLD9-TUMOR_peak_49565 chr7 148788595 148788780 + 10.07430 NA promoter-TSS (NM_152411) promoter-TSS (NM_152411) -818 NM_152411 136051 Hs.729572 NM_152411 HPRD:13232 ZNF786 - zinc finger protein 786 protein-coding 13-PTNLD9-TUMOR_peak_47298 chr7 41980476 41980583 + 10.07173 NA Intergenic Intergenic -237823 NM_002192 3624 Hs.583348 NM_002192 INHBA EDF|FRP inhibin, beta A protein-coding 13-PTNLD9-TUMOR_peak_37433 chr3 196295995 196296129 + 10.07173 NA promoter-TSS (NM_182627) promoter-TSS (NM_182627) 337 NM_001105573 200933 Hs.169815 NM_001105573 ENSG00000174013 FBXO45 Fbx45 F-box protein 45 protein-coding 13-PTNLD9-TUMOR_peak_12165 chr12 12760142 12760284 + 10.07173 NA Intergenic Intergenic -4554 NM_001310 1389 Hs.591156 NM_001310 HPRD:07541 CREBL2 - cAMP responsive element binding protein-like 2 protein-coding 13-PTNLD9-TUMOR_peak_20124 chr16 89429107 89429267 + 10.07173 NA intron (NM_001256182, intron 3 of 13) LTR10C|LTR|ERV1 41646 NM_001242885 100287036 Hs.656995 NM_001242885 LOC100287036 - uncharacterized LOC100287036 protein-coding 13-PTNLD9-TUMOR_peak_34251 chr3 36999535 36999795 + 10.07173 NA Intergenic L2c|LINE|L2 -13117 NM_014831 9881 Hs.170999 NM_014831 ENSG00000168016 TRANK1 LBA1 tetratricopeptide repeat and ankyrin repeat containing 1 protein-coding 13-PTNLD9-TUMOR_peak_320 chr1 9294835 9295097 + 10.07173 NA 5' UTR (NM_004285, exon 1 of 5) 5' UTR (NM_004285, exon 1 of 5) 103 NM_004285 9563 Hs.463511 NM_004285 HPRD:00681 H6PD CORTRD1|G6PDH|GDH hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase) protein-coding 13-PTNLD9-TUMOR_peak_14306 chr12 130609135 130609686 + 10.07173 NA Intergenic Intergenic 36813 NR_033834 440119 Hs.288262 NR_033834 ENSG00000250208 FZD10-AS1 - FZD10 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_53575 chr9 72635982 72636408 + 10.07173 NA Intergenic Intergenic -22302 NM_153267 256691 Hs.547172 NM_153267 HPRD:14353 MAMDC2 - MAM domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_42981 chr5 170850349 170850513 + 10.07141 NA intron (NM_003862, intron 2 of 4) intron (NM_003862, intron 2 of 4) 3764 NM_003862 8817 Hs.87191 NM_003862 HPRD:04766 FGF18 FGF-18|ZFGF5 fibroblast growth factor 18 protein-coding 13-PTNLD9-TUMOR_peak_3272 chr1 145092353 145092876 + 10.07141 NA intron (NM_001277444, intron 20 of 24) intron (NM_001277444, intron 20 of 24) -3793 NM_004892 9554 Hs.632438 NM_004892 SEC22B ERS-24|SEC22L1 SEC22 vesicle trafficking protein homolog B (S. cerevisiae) (gene/pseudogene) protein-coding 13-PTNLD9-TUMOR_peak_36664 chr3 169482842 169482964 + 10.07099 NA promoter-TSS (NR_001566) promoter-TSS (NR_001566) -55 NR_001566 7012 Hs.436182 NR_001566 ENSG00000270141 TERC DKCA1|PFBMFT2|SCARNA19|TR|TRC3|hTR telomerase RNA component ncRNA 13-PTNLD9-TUMOR_peak_3249 chr1 144578937 144579062 + 10.07099 NA intron (NM_001278267, intron 52 of 130) intron (NM_001278267, intron 52 of 130) 33720 NR_003242 767846 Hs.657186 NR_003242 PFN1P2 C1orf152|COAS3 profilin 1 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_47729 chr7 65046341 65046518 + 10.07099 NA intron (NR_038378, intron 8 of 9) MLT1A0|LTR|ERVL-MaLR -66338 NR_027392 644619 Hs.676517 NR_027392 ENSG00000232270 INTS4L2 - integrator complex subunit 4-like 2 pseudo 13-PTNLD9-TUMOR_peak_30661 chr20 25236111 25236243 + 10.06858 NA intron (NM_002862, intron 1 of 19) intron (NM_002862, intron 1 of 19) 7471 NM_002862 5834 Hs.368157 NM_002862 HPRD:00720 PYGB GPBB phosphorylase, glycogen; brain protein-coding 13-PTNLD9-TUMOR_peak_42649 chr5 150053659 150053882 + 10.06858 NA intron (NM_133371, intron 6 of 6) intron (NM_133371, intron 6 of 6) 13367 NM_133371 91977 Hs.91626 NM_133371 HPRD:17624 MYOZ3 CS-3|CS3|FRP3 myozenin 3 protein-coding 13-PTNLD9-TUMOR_peak_43334 chr5 180212878 180213176 + 10.06858 NA Intergenic Intergenic 17021 NM_002406 4245 Hs.519818 NM_002406 HPRD:01189 MGAT1 GLCNAC-TI|GLCT1|GLYT1|GNT-1|GNT-I|MGAT mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase protein-coding 13-PTNLD9-TUMOR_peak_51789 chr8 123257104 123257250 + 10.06858 NA Intergenic L1PA2|LINE|L1 -536724 NM_014943 22882 Hs.377090 NM_014943 HPRD:16458 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 13-PTNLD9-TUMOR_peak_48223 chr7 87204060 87204233 + 10.06858 NA intron (NM_000927, intron 5 of 28) L2c|LINE|L2 -53583 NM_001134405 154661 Hs.411488 NM_138290 HPRD:15274 RUNDC3B RPIB9|RPIP9 RUN domain containing 3B protein-coding 13-PTNLD9-TUMOR_peak_30621 chr20 23860581 23860838 + 10.06858 NA promoter-TSS (NM_001900) promoter-TSS (NM_001900) -329 NM_001900 1473 Hs.121489 NM_001900 HPRD:00463 CST5 - cystatin D protein-coding 13-PTNLD9-TUMOR_peak_13497 chr12 95010173 95010341 + 10.06858 NA promoter-TSS (NM_001301036) promoter-TSS (NM_001301036) -330 NM_001301036 57458 Hs.370410 NM_020698 HPRD:15519 TMCC3 - transmembrane and coiled-coil domain family 3 protein-coding 13-PTNLD9-TUMOR_peak_49206 chr7 134633662 134633764 + 10.06858 NA intron (NM_033140, intron 5 of 11) intron (NM_033140, intron 5 of 11) -37546 NM_178563 340351 Hs.648616 NM_178563 HPRD:14175 AGBL3 CCP3 ATP/GTP binding protein-like 3 protein-coding 13-PTNLD9-TUMOR_peak_55000 chr9 137299225 137299508 + 10.06858 NA intron (NM_001291921, intron 1 of 8) CpG 938 NM_001291921 6256 Hs.590886 NM_002957 RXRA NR2B1 retinoid X receptor, alpha protein-coding 13-PTNLD9-TUMOR_peak_54825 chr9 130700114 130700254 + 10.06858 NA 5' UTR (NM_003863, exon 1 of 4) 5' UTR (NM_003863, exon 1 of 4) 579 NM_003863 8818 Hs.108973 NM_003863 HPRD:16028 DPM2 CDG1U dolichyl-phosphate mannosyltransferase polypeptide 2, regulatory subunit protein-coding 13-PTNLD9-TUMOR_peak_37974 chr4 10050677 10050796 + 10.06858 NA Intergenic L2a|LINE|L2 -8864 NM_001001290 56606 Hs.656895 NM_020041 HPRD:05848 SLC2A9 GLUT9|GLUTX|UAQTL2|URATv1 solute carrier family 2 (facilitated glucose transporter), member 9 protein-coding 13-PTNLD9-TUMOR_peak_29799 chr2 217801771 217802089 + 10.06666 NA Intergenic Intergenic -77148 NM_003284 7141 Hs.3017 NM_003284 HPRD:01830 TNP1 TP1 transition protein 1 (during histone to protamine replacement) protein-coding 13-PTNLD9-TUMOR_peak_40869 chr5 54070682 54070952 + 10.06666 NA Intergenic Intergenic -30731 NR_104658 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 13-PTNLD9-TUMOR_peak_1877 chr1 55411269 55411450 + 10.06666 NA Intergenic Intergenic -35106 NM_182532 199964 Hs.663950 NM_182532 HPRD:14121 TMEM61 - transmembrane protein 61 protein-coding 13-PTNLD9-TUMOR_peak_8184 chr10 102878549 102878681 + 10.06666 NA intron (NM_001085398, intron 2 of 2) intron (NM_001085398, intron 2 of 2) 12288 NM_001085398 100038246 Hs.662323 NM_001085398 ENSG00000236311 TLX1NB APT-B7|TD1|TDI TLX1 neighbor protein-coding 13-PTNLD9-TUMOR_peak_40026 chr4 186456449 186456875 + 10.06666 NA promoter-TSS (NM_001257963) promoter-TSS (NM_001257963) 50 NM_014476 27295 Hs.701364 NM_014476 PDLIM3 ALP PDZ and LIM domain 3 protein-coding 13-PTNLD9-TUMOR_peak_42012 chr5 131551102 131551262 + 10.06666 NA intron (NM_001017974, intron 4 of 14) intron (NM_001017974, intron 4 of 14) 2429 NR_106888 102465498 NR_106888 MIR6830 hsa-mir-6830 microRNA 6830 ncRNA 13-PTNLD9-TUMOR_peak_10865 chr11 87907917 87908139 + 10.06666 NA intron (NM_022337, intron 1 of 2) intron (NM_022337, intron 1 of 2) 607 NM_022337 23682 Hs.591975 NM_022337 HPRD:05889 RAB38 NY-MEL-1|rrGTPbp RAB38, member RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_29884 chr2 220862105 220862545 + 10.06666 NA Intergenic Intergenic -91039 NR_036228 100422959 NR_036228 miRBase:MI0015874 MIR4268 - microRNA 4268 ncRNA 13-PTNLD9-TUMOR_peak_38758 chr4 84278479 84278639 + 10.06666 NA Intergenic L1ME2z|LINE|L1 -22253 NM_006665 10855 Hs.44227 NM_006665 HPRD:05286 HPSE HPA|HPA1|HPR1|HPSE1|HSE1 heparanase protein-coding 13-PTNLD9-TUMOR_peak_34171 chr3 30714608 30714746 + 10.06666 NA intron (NM_001024847, intron 5 of 7) intron (NM_001024847, intron 5 of 7) 66683 NM_003242 7048 Hs.82028 NM_003242 HPRD:01823 TGFBR2 AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TGFR-2|TGFbeta-RII transforming growth factor, beta receptor II (70/80kDa) protein-coding 13-PTNLD9-TUMOR_peak_53570 chr9 72435535 72435683 + 10.06666 NA promoter-TSS (NR_038833) promoter-TSS (NR_038833) 46 NR_038833 494558 Hs.130722 NR_038833 C9orf135-AS1 - C9orf135 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_14926 chr13 84766362 84766570 + 10.06666 NA intron (NR_046871, intron 1 of 6) intron (NR_046871, intron 1 of 6) 51729 NR_046871 100874128 Hs.578060 NR_046871 LINC00333 NCRNA00333 long intergenic non-protein coding RNA 333 ncRNA 13-PTNLD9-TUMOR_peak_2331 chr1 85872955 85873097 + 10.06666 NA intron (NM_001134445, intron 2 of 6) intron (NM_001134445, intron 2 of 6) 57863 NM_012137 23576 Hs.713411 NM_012137 HPRD:09203 DDAH1 DDAH|HEL-S-16 dimethylarginine dimethylaminohydrolase 1 protein-coding 13-PTNLD9-TUMOR_peak_42791 chr5 157189069 157189227 + 10.06666 NA Intergenic Intergenic 18393 NM_173491 134353 Hs.631954 NM_173491 LSM11 - LSM11, U7 small nuclear RNA associated protein-coding 13-PTNLD9-TUMOR_peak_33485 chr22 47724706 47725008 + 10.06666 NA Intergenic Intergenic 158003 NR_109967 101927722 Hs.589927 NR_109967 ENSG00000218357 LOC101927722 - uncharacterized LOC101927722 ncRNA 13-PTNLD9-TUMOR_peak_35031 chr3 75955786 75955945 + 10.06666 NA Intergenic CpG -121131 NM_001290210 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 X17|ZNF838 zinc finger protein 717 protein-coding 13-PTNLD9-TUMOR_peak_35794 chr3 127814110 127814235 + 10.06666 NA intron (NM_003707, intron 8 of 10) intron (NM_003707, intron 8 of 10) 19519 NR_046645 100874089 Hs.581603 NR_046645 RUVBL1-AS1 - RUVBL1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_27119 chr2 66023021 66023191 + 10.06666 NA Intergenic AluY|SINE|Alu -363450 NM_181784 200734 Hs.59332 NM_181784 HPRD:18100 SPRED2 Spred-2 sprouty-related, EVH1 domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_16897 chr15 30216968 30217193 + 10.05947 NA intron (NM_001301025, intron 2 of 28) intron (NM_001301025, intron 2 of 28) 43922 NM_001301025 7082 Hs.743990 NM_003257 HPRD:03002 TJP1 ZO-1 tight junction protein 1 protein-coding 13-PTNLD9-TUMOR_peak_35557 chr3 122232908 122233063 + 10.05603 NA intron (NR_026698, intron 1 of 14) intron (NR_026698, intron 1 of 14) 801 NM_002264 3836 Hs.161008 NM_002264 HPRD:02819 KPNA1 IPOA5|NPI-1|RCH2|SRP1 karyopherin alpha 1 (importin alpha 5) protein-coding 13-PTNLD9-TUMOR_peak_19903 chr16 82173302 82173430 + 10.05603 NA Intergenic L1PA2|LINE|L1 30463 NM_005792 10200 Hs.344400 NM_005792 HPRD:16111 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 13-PTNLD9-TUMOR_peak_42839 chr5 159335637 159335833 + 10.05568 NA Intergenic MIRb|SINE|MIR -8005 NM_000679 147 Hs.368632 NM_000679 ADRA1B ADRA1|ALPHA1BAR adrenoceptor alpha 1B protein-coding 13-PTNLD9-TUMOR_peak_16031 chr14 65174904 65175062 + 10.05344 NA intron (NM_015549, intron 1 of 14) intron (NM_015549, intron 1 of 14) 3790 NM_015549 26030 Hs.509637 NM_015549 HPRD:17861 PLEKHG3 ARHGEF43|KIAA0599 pleckstrin homology domain containing, family G (with RhoGef domain) member 3 protein-coding 13-PTNLD9-TUMOR_peak_14162 chr12 123372037 123372188 + 10.05344 NA intron (NM_024667, intron 1 of 3) L2b|LINE|L2 8600 NM_024667 79720 Hs.507162 NM_024667 HPRD:07794 VPS37B - vacuolar protein sorting 37 homolog B (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_25339 chr19 49378497 49378749 + 10.04884 NA intron (NM_014330, intron 2 of 2) intron (NM_014330, intron 2 of 2) 2974 NM_014330 23645 Hs.631593 NM_014330 HPRD:06572 PPP1R15A GADD34 protein phosphatase 1, regulatory subunit 15A protein-coding 13-PTNLD9-TUMOR_peak_53239 chr9 39321665 39321793 + 10.04259 NA Intergenic Intergenic -33429 NM_033655 79937 Hs.128474 NM_033655 HPRD:10842 CNTNAP3 CASPR3|CNTNAP3A contactin associated protein-like 3 protein-coding 13-PTNLD9-TUMOR_peak_51907 chr8 126478919 126479104 + 10.04259 NA Intergenic Intergenic 34560 NM_001282985 10221 Hs.444947 NM_025195 HPRD:09863 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 13-PTNLD9-TUMOR_peak_23836 chr19 8333920 8334273 + 10.04259 NA Intergenic LTR13|LTR|ERVK 39144 NM_016579 51293 Hs.558499 NM_016579 HPRD:05929 CD320 8D6|8D6A|TCBLR CD320 molecule protein-coding 13-PTNLD9-TUMOR_peak_22078 chr17 74598105 74598242 + 10.04259 NA Intergenic MER41B|LTR|ERV1 -16028 NM_006456 10610 Hs.592105 NM_006456 HPRD:10231 ST6GALNAC2 SAITL1|SIAT7|SIAT7B|SIATL1|ST6GalNAII|STHM ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2 protein-coding 13-PTNLD9-TUMOR_peak_49681 chr7 151368730 151368939 + 10.04259 NA intron (NM_001040633, intron 4 of 15) intron (NM_001040633, intron 4 of 15) -39490 NM_024429 51422 Hs.647072 NM_016203 HPRD:04119 PRKAG2 AAKG|AAKG2|CMH6|H91620p|WPWS protein kinase, AMP-activated, gamma 2 non-catalytic subunit protein-coding 13-PTNLD9-TUMOR_peak_40658 chr5 38636862 38636996 + 10.04259 NA intron (NR_103554, intron 2 of 8) MER21-int|LTR|ERVL -41422 NM_002310 3977 Hs.133421 NM_002310 HPRD:01048 LIFR CD118|LIF-R|SJS2|STWS|SWS leukemia inhibitory factor receptor alpha protein-coding 13-PTNLD9-TUMOR_peak_4665 chr1 182346388 182346581 + 10.04259 NA Intergenic Intergenic 14055 NM_001033056 2752 Hs.518525 NM_002065 HPRD:00701 GLUL GLNS|GS|PIG43|PIG59 glutamate-ammonia ligase protein-coding 13-PTNLD9-TUMOR_peak_5525 chr1 223853426 223853600 + 10.04259 NA promoter-TSS (NM_001143962) promoter-TSS (NM_001143962) -77 NM_001143962 388743 Hs.291487 NM_001143962 CAPN8 nCL-2 calpain 8 protein-coding 13-PTNLD9-TUMOR_peak_17437 chr15 64618975 64619097 + 10.04259 NA intron (NM_022048, intron 1 of 11) L1PA2|LINE|L1 29406 NM_022048 53944 Hs.646508 NM_022048 ENSG00000169118 CSNK1G1 CK1gamma1 casein kinase 1, gamma 1 protein-coding 13-PTNLD9-TUMOR_peak_25026 chr19 41633828 41634068 + 10.04259 NA exon (NM_000774, exon 10 of 10) exon (NM_000774, exon 10 of 10) 13595 NM_000774 1572 Hs.558318 NM_000774 HPRD:00490 CYP2F1 C2F1|CYP2F cytochrome P450, family 2, subfamily F, polypeptide 1 protein-coding 13-PTNLD9-TUMOR_peak_41360 chr5 76925981 76926212 + 10.03790 NA exon (NM_032109, exon 3 of 3) exon (NM_032109, exon 3 of 3) 8426 NM_032109 23440 Hs.202247 NM_032109 OTP - orthopedia homeobox protein-coding 13-PTNLD9-TUMOR_peak_53557 chr9 71939832 71940142 + 10.03790 NA intron (NM_001127608, intron 1 of 10) CpG 499 NM_001127608 9413 Hs.118003 NM_004816 HPRD:16255 FAM189A2 C9orf61|X123 family with sequence similarity 189, member A2 protein-coding 13-PTNLD9-TUMOR_peak_47006 chr7 20817543 20817848 + 10.03790 NA Intergenic CpG 8813 NM_198956 221833 Hs.195922 NM_182700 SP8 BTD Sp8 transcription factor protein-coding 13-PTNLD9-TUMOR_peak_32174 chr21 34814494 34814782 + 10.03790 NA intron (NR_040016, intron 7 of 8) intron (NR_040016, intron 7 of 8) 37678 NR_040016 757 Hs.433668 NM_006134 HPRD:10747 TMEM50B C21orf4|HCVP7TP3 transmembrane protein 50B protein-coding 13-PTNLD9-TUMOR_peak_37585 chr4 1646695 1646984 + 10.03790 NA intron (NM_001297435, intron 4 of 5) intron (NM_001297435, intron 4 of 5) 38879 NM_001013622 152877 Hs.143314 NM_001013622 HPRD:12900 FAM53A DNTNP family with sequence similarity 53, member A protein-coding 13-PTNLD9-TUMOR_peak_43345 chr5 180296146 180296260 + 10.03790 NA Intergenic Intergenic -7917 NM_152283 643836 Hs.509227 NM_152283 ENSG00000196670 ZFP62 ZET|ZNF755 ZFP62 zinc finger protein protein-coding 13-PTNLD9-TUMOR_peak_17293 chr15 52167573 52167766 + 10.03790 NA intron (NM_014547, intron 3 of 9) intron (NM_014547, intron 3 of 9) 45844 NM_014547 29766 Hs.4998 NM_014547 HPRD:10389 TMOD3 UTMOD tropomodulin 3 (ubiquitous) protein-coding 13-PTNLD9-TUMOR_peak_33694 chr3 9757622 9757803 + 10.03790 NA exon (NM_153635, exon 13 of 20) exon (NM_153635, exon 13 of 20) 12202 NM_153635 151835 Hs.121335 NM_153635 HPRD:17307 CPNE9 - copine family member IX protein-coding 13-PTNLD9-TUMOR_peak_27841 chr2 101575920 101576075 + 10.03790 NA intron (NM_002518, intron 7 of 20) intron (NM_002518, intron 7 of 20) 17626 NR_110213 101927142 Hs.656556 NR_110213 LOC101927142 - uncharacterized LOC101927142 ncRNA 13-PTNLD9-TUMOR_peak_21799 chr17 63355302 63355417 + 10.03790 NA Intergenic MER74A|LTR|ERVL 202381 NM_004655 8313 Hs.156527 NM_004655 HPRD:04935 AXIN2 AXIL|ODCRCS axin 2 protein-coding 13-PTNLD9-TUMOR_peak_47714 chr7 64458468 64458755 + 10.03790 NA intron (NM_001007253, intron 1 of 1) HERV3-int|LTR|ERV1 -7197 NM_015852 51351 Hs.250693 NM_015852 ZNF117 H-plk|HPF9 zinc finger protein 117 protein-coding 13-PTNLD9-TUMOR_peak_50719 chr8 41710175 41710375 + 10.03790 NA intron (NM_001142446, intron 1 of 42) MIRb|SINE|MIR 44005 NM_001142446 286 Hs.654438 NM_000037 HPRD:01693 ANK1 ANK|SPH1|SPH2 ankyrin 1, erythrocytic protein-coding 13-PTNLD9-TUMOR_peak_56588 chrX 148877360 148877511 + 10.03790 NA Intergenic L1MCb|LINE|L1 13835 NM_005365 4108 Hs.460974 NM_005365 HPRD:02279 MAGEA9 CT1.9|MAGE9 melanoma antigen family A, 9 protein-coding 13-PTNLD9-TUMOR_peak_9391 chr11 28780997 28781147 + 10.03790 NA Intergenic Intergenic -281977 NR_107035 102466876 NR_107035 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 13-PTNLD9-TUMOR_peak_39590 chr4 148992176 148992405 + 10.03790 NA intron (NM_024605, intron 22 of 22) L2b|LINE|L2 288544 NR_039962 100616246 NR_039962 MIR4799 - microRNA 4799 ncRNA 13-PTNLD9-TUMOR_peak_22228 chr17 78400801 78400971 + 10.03790 NA intron (NM_173627, intron 7 of 9) intron (NM_173627, intron 7 of 9) 7668 NR_039883 100616359 NR_039883 MIR4730 - microRNA 4730 ncRNA 13-PTNLD9-TUMOR_peak_6808 chr10 30046980 30047128 + 10.03790 NA Intergenic L2c|LINE|L2 -22324 NM_003174 6840 Hs.499209 NM_003174 HPRD:04992 SVIL - supervillin protein-coding 13-PTNLD9-TUMOR_peak_19739 chr16 73023588 73023828 + 10.03790 NA intron (NM_006885, intron 1 of 9) intron (NM_006885, intron 1 of 9) 58566 NM_006885 463 Hs.598297 NM_006885 HPRD:00075 ZFHX3 ATBF1|ATBT|ZNF927 zinc finger homeobox 3 protein-coding 13-PTNLD9-TUMOR_peak_25110 chr19 45129271 45129718 + 10.03790 NA intron (NM_001205280, intron 2 of 4) intron (NM_001205280, intron 2 of 4) 12554 NM_001205280 147710 Hs.512509 NM_001205280 ENSG00000216588 IGSF23 - immunoglobulin superfamily, member 23 protein-coding 13-PTNLD9-TUMOR_peak_33256 chr22 38614628 38614845 + 10.03672 NA TTS (NM_001195072) TTS (NM_001195072) 15709 NM_001161573 23764 Hs.517617 NM_012323 HPRD:05343 MAFF U-MAF|hMafF v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog F protein-coding 13-PTNLD9-TUMOR_peak_21151 chr17 42148003 42148131 + 10.03672 NA promoter-TSS (NM_138387) promoter-TSS (NM_138387) -31 NR_028581 92579 Hs.294005 NM_138387 HPRD:13556 G6PC3 SCN4|UGRP glucose 6 phosphatase, catalytic, 3 protein-coding 13-PTNLD9-TUMOR_peak_48311 chr7 92275021 92275357 + 10.03672 NA intron (NM_001259, intron 5 of 7) intron (NM_001259, intron 5 of 7) -55481 NR_109929 257415 Hs.18564 NM_152789 HPRD:17557 FAM133B - family with sequence similarity 133, member B protein-coding 13-PTNLD9-TUMOR_peak_5242 chr1 206155286 206155515 + 10.03672 NA TTS (NM_001287385) TTS (NM_001287385) 16489 NM_001123168 729533 Hs.661924 NM_001123168 FAM72A LMPIP family with sequence similarity 72, member A protein-coding 13-PTNLD9-TUMOR_peak_437 chr1 11968855 11969111 + 10.03252 NA Intergenic Intergenic 17502 NM_138346 90231 Hs.520094 NM_138346 HPRD:14576 KIAA2013 - KIAA2013 protein-coding 13-PTNLD9-TUMOR_peak_42028 chr5 131746437 131746897 + 10.03158 NA non-coding (NR_045116, exon 1 of 4) non-coding (NR_045116, exon 1 of 4) 202 NR_045116 441108 Hs.658288 NM_001013717 HPRD:18460 C5orf56 - chromosome 5 open reading frame 56 ncRNA 13-PTNLD9-TUMOR_peak_52482 chr8 145044863 145045297 + 10.03158 NA intron (NM_000445, intron 2 of 32) intron (NM_000445, intron 2 of 32) 2617 NM_201378 5339 Hs.434248 NM_000445 HPRD:03180 PLEC EBS1|EBSO|HD1|LGMD2Q|PCN|PLEC1|PLEC1b|PLTN plectin protein-coding 13-PTNLD9-TUMOR_peak_20937 chr17 36442062 36442184 + 10.03158 NA Intergenic MIR3|SINE|MIR -10866 NM_001278279 84311 Hs.537279 NM_032351 HPRD:14764 MRPL45 L45mt|MRP-L45 mitochondrial ribosomal protein L45 protein-coding 13-PTNLD9-TUMOR_peak_13662 chr12 105352792 105352968 + 10.03158 NA Intergenic Intergenic -27218 NM_152318 121053 Hs.295563 NM_152318 C12orf45 - chromosome 12 open reading frame 45 protein-coding 13-PTNLD9-TUMOR_peak_56737 chrX 153956348 153956499 + 10.03011 NA intron (NR_104114, intron 1 of 8) intron (NR_104114, intron 1 of 8) 22935 NM_001282283 139716 Hs.496982 NM_080612 HPRD:06571 GAB3 - GRB2-associated binding protein 3 protein-coding 13-PTNLD9-TUMOR_peak_54062 chr9 97568025 97568172 + 10.03011 NA intron (NM_032823, intron 5 of 14) intron (NM_032823, intron 5 of 14) -4146 NR_031755 100313780 NR_031755 MIR2278 - microRNA 2278 ncRNA 13-PTNLD9-TUMOR_peak_15525 chr14 34688955 34689152 + 10.03011 NA Intergenic Intergenic 242415 NM_138288 171546 Hs.740577 NM_138288 HPRD:16610 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase, small subunit A protein-coding 13-PTNLD9-TUMOR_peak_50423 chr8 27183002 27183135 + 10.03011 NA promoter-TSS (NM_173175) promoter-TSS (NM_173175) -13 NM_173175 2185 Hs.491322 NM_004103 HPRD:03131 PTK2B CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK protein tyrosine kinase 2 beta protein-coding 13-PTNLD9-TUMOR_peak_24874 chr19 38506000 38506220 + 10.03011 NA intron (NM_015073, intron 1 of 21) AluJb|SINE|Alu 108249 NM_015073 23094 Hs.655502 NM_015073 HPRD:18755 SIPA1L3 SPAL3 signal-induced proliferation-associated 1 like 3 protein-coding 13-PTNLD9-TUMOR_peak_35489 chr3 119028940 119029257 + 10.03011 NA intron (NM_020754, intron 1 of 11) intron (NM_020754, intron 1 of 11) 12509 NR_046748 100874246 Hs.607097 NR_046748 ARHGAP31-AS1 - ARHGAP31 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_13348 chr12 72419431 72419579 + 10.03011 NA intron (NM_173353, intron 9 of 10) intron (NM_173353, intron 9 of 10) 86879 NM_173353 121278 Hs.736576 NM_173353 HPRD:09594 TPH2 ADHD7|NTPH tryptophan hydroxylase 2 protein-coding 13-PTNLD9-TUMOR_peak_1836 chr1 54481822 54482545 + 10.03011 NA intron (NM_001010978, intron 2 of 5) intron (NM_001010978, intron 2 of 5) 1676 NM_001276395 388633 Hs.439583 NM_001010978 LDLRAD1 - low density lipoprotein receptor class A domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_51739 chr8 120213044 120213195 + 10.02377 NA Intergenic LTR16A2|LTR|ERVL -7491 NM_052886 114569 Hs.201083 NM_052886 HPRD:14351 MAL2 - mal, T-cell differentiation protein 2 (gene/pseudogene) protein-coding 13-PTNLD9-TUMOR_peak_715 chr1 24743617 24743756 + 10.02368 NA intron (NM_020448, intron 1 of 11) intron (NM_020448, intron 1 of 11) 1441 NM_020448 57185 Hs.523442 NM_020448 HPRD:13149 NIPAL3 DJ462O23.2|NPAL3 NIPA-like domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_24350 chr19 17911267 17911525 + 10.02368 NA intron (NM_014256, intron 1 of 2) intron (NM_014256, intron 1 of 2) 5477 NM_014256 10331 Hs.69009 NM_014256 HPRD:10431 B3GNT3 B3GAL-T8|B3GN-T3|B3GNT-3|HP10328|TMEM3|beta3Gn-T3 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3 protein-coding 13-PTNLD9-TUMOR_peak_43568 chr6 4018569 4019100 + 10.01886 NA Intergenic CpG -2735 NM_003913 8899 Hs.159014 NM_003913 HPRD:09087 PRPF4B PR4H|PRP4|PRP4H|PRP4K|dJ1013A10.1 pre-mRNA processing factor 4B protein-coding 13-PTNLD9-TUMOR_peak_48238 chr7 87921150 87921452 + 10.01886 NA intron (NM_001205315, intron 1 of 5) X7C_LINE|LINE|CR1 14927 NM_024636 79689 Hs.521008 NM_024636 HPRD:11637 STEAP4 STAMP2|TIARP|TNFAIP9 STEAP family member 4 protein-coding 13-PTNLD9-TUMOR_peak_35791 chr3 127730169 127730297 + 10.01266 NA Intergenic Intergenic -40979 NM_013336 29927 Hs.518236 NM_013336 HPRD:15316 SEC61A1 HSEC61|SEC61|SEC61A Sec61 alpha 1 subunit (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_51008 chr8 59323855 59323983 + 10.01266 NA promoter-TSS (NM_001077619) promoter-TSS (NM_001077619) 96 NM_001077619 137886 Hs.155572 NM_001077619 ENSG00000215114 UBXN2B p37 UBX domain protein 2B protein-coding 13-PTNLD9-TUMOR_peak_11324 chr11 116860821 116860940 + 10.01266 NA intron (NM_025164, intron 1 of 23) intron (NM_025164, intron 1 of 23) 108251 NM_025164 23387 Hs.167451 NM_025164 HPRD:11121 SIK3 QSK|SIK-3 SIK family kinase 3 protein-coding 13-PTNLD9-TUMOR_peak_52329 chr8 141737467 141737707 + 10.01266 NA intron (NM_153831, intron 22 of 31) intron (NM_153831, intron 22 of 31) -91941 NM_001164623 27161 Hs.743313 NM_012154 HPRD:06943 AGO2 EIF2C2|Q10 argonaute RISC catalytic component 2 protein-coding 13-PTNLD9-TUMOR_peak_10938 chr11 94156727 94157077 + 10.01266 NA intron (NM_005590, intron 18 of 18) L1PA16|LINE|L1 -22317 NM_016540 10888 Hs.272385 NM_016540 HPRD:16125 GPR83 GIR|GPR72 G protein-coupled receptor 83 protein-coding 13-PTNLD9-TUMOR_peak_10969 chr11 95245854 95246027 + 10.01266 NA Intergenic Intergenic 277014 NM_144664 143684 Hs.288304 NM_144664 HPRD:11333 FAM76B - family with sequence similarity 76, member B protein-coding 13-PTNLD9-TUMOR_peak_54411 chr9 112580240 112580408 + 10.01266 NA intron (NM_001037293, intron 2 of 6) intron (NM_001037293, intron 2 of 6) 37747 NM_007203 445815 Hs.591908 NM_007203 HPRD:09197 PALM2-AKAP2 AKAP2 PALM2-AKAP2 readthrough protein-coding 13-PTNLD9-TUMOR_peak_43062 chr5 172710783 172711049 + 10.01266 NA Intergenic CpG 45590 NM_003714 8614 Hs.233160 NM_003714 HPRD:04717 STC2 STC-2|STCRP stanniocalcin 2 protein-coding 13-PTNLD9-TUMOR_peak_45245 chr6 47632935 47633086 + 10.01266 NA intron (NM_153839, intron 2 of 10) intron (NM_153839, intron 2 of 10) 8684 NM_153839 222611 Hs.724860 NM_153839 HPRD:17055 GPR111 PGR20|hGPCR35 G protein-coupled receptor 111 protein-coding 13-PTNLD9-TUMOR_peak_35923 chr3 131245736 131245910 + 10.01266 NA Intergenic CpG -23963 NM_007208 11222 Hs.205163 NM_007208 HPRD:06175 MRPL3 COXPD9|MRL3|RPML3 mitochondrial ribosomal protein L3 protein-coding 13-PTNLD9-TUMOR_peak_22716 chr18 18971065 18971313 + 10.01266 NA intron (NM_001142966, intron 4 of 32) Tigger3b|DNA|TcMar-Tigger 148986 NM_001142966 80000 Hs.149020 NM_024935 HPRD:11161 GREB1L C18orf6|KIAA1772 growth regulation by estrogen in breast cancer-like protein-coding 13-PTNLD9-TUMOR_peak_51856 chr8 125193737 125193940 + 10.01266 NA Intergenic LTR24|LTR|ERV1 -10075 NR_103547 157376 Hs.662360 NM_182525 HPRD:08138 FER1L6-AS2 C8orf78 FER1L6 antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_56573 chrX 145077394 145077661 + 10.01266 NA TTS (NR_030584) TTS (NR_030584) 734 NR_030584 100126342 NR_030584 miRBase:MI0005528 MIR892A MIRN892A microRNA 892a ncRNA 13-PTNLD9-TUMOR_peak_16176 chr14 70294334 70294609 + 10.01266 NA Intergenic MLT2A1|LTR|ERVL -30465 NM_003049 6554 Hs.952 NM_003049 SLC10A1 NTCP solute carrier family 10 (sodium/bile acid cotransporter), member 1 protein-coding 13-PTNLD9-TUMOR_peak_34118 chr3 25862082 25862218 + 10.01266 NA Intergenic MLT1K|LTR|ERVL-MaLR 30587 NR_026937 54995 Hs.55781 NM_017897 HPRD:07931 OXSM FASN2D|KASI|KS 3-oxoacyl-ACP synthase, mitochondrial protein-coding 13-PTNLD9-TUMOR_peak_37723 chr4 4587033 4587271 + 10.01266 NA intron (NR_037888, intron 2 of 5) MLT1A0-int|LTR|ERVL-MaLR 43294 NR_037888 100507266 Hs.276795 NR_037888 ENSG00000247708 STX18-AS1 - STX18 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_8515 chr10 124250803 124251120 + 10.01266 NA intron (NM_002775, intron 3 of 8) intron (NM_002775, intron 3 of 8) 29920 NM_002775 5654 Hs.501280 NM_002775 HPRD:03725 HTRA1 ARMD7|CARASIL|HtrA|L56|ORF480|PRSS11 HtrA serine peptidase 1 protein-coding 13-PTNLD9-TUMOR_peak_44172 chr6 25251163 25251415 + 10.01266 NA intron (NR_110863, intron 2 of 2) intron (NR_110863, intron 2 of 2) 10346 NR_110862 101928663 Hs.561600 NR_110862 LOC101928663 - uncharacterized LOC101928663 ncRNA 13-PTNLD9-TUMOR_peak_17626 chr15 74102532 74102741 + 10.01266 NA Intergenic Intergenic 42081 NR_120352 101929221 NR_120352 LOC101929221 - uncharacterized LOC101929221 ncRNA 13-PTNLD9-TUMOR_peak_35141 chr3 97298298 97298454 + 10.01266 NA intron (NM_001080448, intron 11 of 17) intron (NM_001080448, intron 11 of 17) 139939 NM_001278300 285220 Hs.653244 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 13-PTNLD9-TUMOR_peak_31739 chr20 58563283 58563492 + 10.01266 NA intron (NM_177980, intron 8 of 17) MER5A1|DNA|hAT-Charlie -8030 NM_021810 60437 Hs.729046 NM_021810 HPRD:13020 CDH26 VR20 cadherin 26 protein-coding 13-PTNLD9-TUMOR_peak_28383 chr2 128407389 128407533 + 10.01266 NA intron (NM_001161416, intron 2 of 2) intron (NM_001161416, intron 2 of 2) -1633 NM_001256542 55679 Hs.469881 NM_017980 ENSG00000072163 LIMS2 PINCH-2|PINCH2 LIM and senescent cell antigen-like domains 2 protein-coding 13-PTNLD9-TUMOR_peak_55417 chrUn_gl000227 64753 64867 + 10.01222 NA Intergenic AluSz|SINE|Alu 9435 NR_109817 441123 NR_109817 ENSG00000170590 LINC00266-3 C6orf88|NCRNA00266-3|NCRNA00266C|dJ24O22.2 long intergenic non-protein coding RNA 266-3 ncRNA 13-PTNLD9-TUMOR_peak_15399 chr14 24911373 24911605 + 10.00339 NA promoter-TSS (NR_110032) promoter-TSS (NR_110032) 170 NM_001290293 56948 Hs.643552 NM_020195 HPRD:16598 SDR39U1 C14orf124|HCDI short chain dehydrogenase/reductase family 39U, member 1 protein-coding 13-PTNLD9-TUMOR_peak_44197 chr6 26047280 26047402 + 10.00339 NA Intergenic Arthur1B|DNA|hAT-Tip100 1702 NM_003531 8352 Hs.248176 NM_003531 HPRD:11906 HIST1H3C H3.1|H3/c|H3FC histone cluster 1, H3c protein-coding 13-PTNLD9-TUMOR_peak_28752 chr2 153269789 153270075 + 10.00339 NA intron (NM_052905, intron 1 of 25) intron (NM_052905, intron 1 of 25) 78181 NM_052905 114793 Hs.654630 NM_052905 HPRD:13545 FMNL2 FHOD2 formin-like 2 protein-coding 13-PTNLD9-TUMOR_peak_20044 chr16 87883787 87883912 + 10.00125 NA intron (NM_003486, intron 2 of 9) intron (NM_003486, intron 2 of 9) -15583 NR_106833 102465464 NR_106833 MIR6775 hsa-mir-6775 microRNA 6775 ncRNA 13-PTNLD9-TUMOR_peak_33784 chr3 11859530 11859793 + 10.00125 NA intron (NM_001284401, intron 4 of 7) intron (NM_001284401, intron 4 of 7) 28732 NM_138807 132001 Hs.475472 NM_138807 HPRD:14452 TAMM41 C3orf31|RAM41|TAM41 TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_42346 chr5 140419683 140419956 + 10.00125 NA Intergenic Intergenic -11142 NM_013340 29930 Hs.278950 NM_013340 HPRD:08397 PCDHB1 PCDH-BETA1 protocadherin beta 1 protein-coding 13-PTNLD9-TUMOR_peak_49415 chr7 141615506 141615655 + 10.00125 NA Intergenic Intergenic -3096 NM_001001656 130075 Hs.690171 NM_001001656 HPRD:17797 OR9A4 - olfactory receptor, family 9, subfamily A, member 4 protein-coding 13-PTNLD9-TUMOR_peak_23608 chr19 1183683 1184097 + 10.00125 NA Intergenic Intergenic -9608 NM_014963 22904 Hs.408708 NM_014963 HPRD:17203 SBNO2 KIAA0963|SNO|STNO strawberry notch homolog 2 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_49345 chr7 139273468 139273580 + 10.00125 NA intron (NM_022740, intron 12 of 14) intron (NM_022740, intron 12 of 14) 64850 NM_001080511 154790 Hs.57806 NM_001080511 ENSG00000236279 CLEC2L - C-type lectin domain family 2, member L protein-coding 13-PTNLD9-TUMOR_peak_21804 chr17 63459387 63459820 + 10.00125 NA Intergenic Intergenic 98137 NM_004655 8313 Hs.156527 NM_004655 HPRD:04935 AXIN2 AXIL|ODCRCS axin 2 protein-coding 13-PTNLD9-TUMOR_peak_32961 chr22 24878570 24878811 + 10.00034 NA intron (NR_028483, intron 1 of 7) intron (NR_028483, intron 1 of 7) 12093 NR_028484 646023 Hs.632761 NM_001039784 ENSG00000178803 ADORA2A-AS1 C22orf45 ADORA2A antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_32197 chr21 35348846 35349199 + 10.00034 NA Intergenic Intergenic 27792 NM_001288961 400863 Hs.729814 NM_207472 LOC400863 - uncharactered LOC400863 protein-coding 13-PTNLD9-TUMOR_peak_26056 chr2 9615156 9615473 + 10.00034 NA intron (NM_001039613, intron 1 of 5) intron (NM_001039613, intron 1 of 5) 644 NM_001039613 285148 Hs.744980 NM_001039613 IAH1 - isoamyl acetate-hydrolyzing esterase 1 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_10042 chr11 61872751 61872954 + 10.00034 NA Intergenic MER41B|LTR|ERV1 -18593 NM_001040694 3619 Hs.142179 NM_020238 HPRD:05103 INCENP - inner centromere protein antigens 135/155kDa protein-coding 13-PTNLD9-TUMOR_peak_12046 chr12 7315342 7315613 + 10.00034 NA Intergenic Intergenic -26282 NM_001131026 5830 Hs.567327 NM_000319 HPRD:02684 PEX5 PBD2A|PBD2B|PTS1-BP|PTS1R|PXR1 peroxisomal biogenesis factor 5 protein-coding 13-PTNLD9-TUMOR_peak_54423 chr9 112903527 112904046 + 10.00034 NA intron (NM_001004065, intron 2 of 3) intron (NM_001004065, intron 2 of 3) 16005 NM_001136562 11217 Hs.591908 NM_001004065 ENSG00000241978 AKAP2 AKAP-2|AKAPKL|PRKA2 A kinase (PRKA) anchor protein 2 protein-coding 13-PTNLD9-TUMOR_peak_26055 chr2 9614653 9615026 + 10.00034 NA intron (NM_001039613, intron 1 of 5) CpG 169 NM_001039613 285148 Hs.744980 NM_001039613 IAH1 - isoamyl acetate-hydrolyzing esterase 1 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_39269 chr4 124595272 124595508 + 10.00034 NA intron (NR_027105, intron 2 of 4) intron (NR_027105, intron 2 of 4) 21450 NR_027105 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 13-PTNLD9-TUMOR_peak_37614 chr4 2366485 2366686 + 10.00034 NA promoter-TSS (NM_001172660) promoter-TSS (NM_001172660) 19 NM_001172660 57732 Hs.292056 NM_020972 HPRD:11701 ZFYVE28 LST2|LYST2 zinc finger, FYVE domain containing 28 protein-coding 13-PTNLD9-TUMOR_peak_34733 chr3 56896824 56897055 + 10.00034 NA intron (NM_001289698, intron 2 of 10) intron (NM_001289698, intron 2 of 10) 53560 NM_001289698 50650 Hs.476402 NM_019555 HPRD:12480 ARHGEF3 GEF3|STA3|XPLN Rho guanine nucleotide exchange factor (GEF) 3 protein-coding 13-PTNLD9-TUMOR_peak_42293 chr5 139167098 139167491 + 10.00034 NA Intergenic CpG -8112 NM_032289 84249 Hs.21963 NM_032289 HPRD:15190 PSD2 - pleckstrin and Sec7 domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_35867 chr3 129442903 129443039 + 10.00034 NA intron (NM_001017395, intron 3 of 5) intron (NM_001017395, intron 3 of 5) -35396 NR_033361 23023 Hs.477547 NM_015008 HPRD:15518 TMCC1 - transmembrane and coiled-coil domain family 1 protein-coding 13-PTNLD9-TUMOR_peak_43981 chr6 17471939 17472272 + 10.00034 NA intron (NM_006366, intron 4 of 12) intron (NM_006366, intron 4 of 12) 39391 NR_110855 101928491 Hs.622876 NR_110855 LOC101928491 - uncharacterized LOC101928491 ncRNA 13-PTNLD9-TUMOR_peak_39074 chr4 111012729 111012934 + 10.00034 NA intron (NM_001130721, intron 3 of 4) intron (NM_001130721, intron 3 of 4) 106940 NM_001130721 79071 Hs.412939 NM_024090 HPRD:13269 ELOVL6 FACE|FAE|LCE ELOVL fatty acid elongase 6 protein-coding 13-PTNLD9-TUMOR_peak_3403 chr1 147533287 147533384 + 9.99342 NA Intergenic AluY|SINE|Alu -46147 NR_111936 100034743 Hs.696575 NR_003377 ENSG00000215860 PDZK1P2 OTTHUMT00000038524|PDZK1P1 PDZ domain containing 1 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_12021 chr12 7033552 7033663 + 9.99342 NA promoter-TSS (NM_001007026) promoter-TSS (NM_001007026) -19 NM_001007026 1822 Hs.143766 NM_001940 HPRD:06311 ATN1 B37|D12S755E|DRPLA|HRS|NOD atrophin 1 protein-coding 13-PTNLD9-TUMOR_peak_22320 chr17 80204644 80204762 + 9.99342 NA intron (NR_110578, intron 7 of 8) intron (NR_110578, intron 7 of 8) 10159 NR_106845 102465472 NR_106845 MIR6787 hsa-mir-6787 microRNA 6787 ncRNA 13-PTNLD9-TUMOR_peak_40538 chr5 32276666 32276813 + 9.99153 NA intron (NM_001294343, intron 2 of 14) intron (NM_001294343, intron 2 of 14) 36375 NM_001040446 54545 Hs.481836 NM_019061 HPRD:05933 MTMR12 3-PAP|PIP3AP myotubularin related protein 12 protein-coding 13-PTNLD9-TUMOR_peak_54347 chr9 110400268 110400441 + 9.99153 NA Intergenic CpG -148307 NM_004235 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel-like factor 4 (gut) protein-coding 13-PTNLD9-TUMOR_peak_1727 chr1 49318782 49318980 + 9.99153 NA intron (NM_032785, intron 6 of 13) MLT1F|LTR|ERVL-MaLR -76334 NM_024603 79656 Hs.475348 NM_024603 BEND5 C1orf165 BEN domain containing 5 protein-coding 13-PTNLD9-TUMOR_peak_2536 chr1 94544598 94544873 + 9.99153 NA intron (NM_000350, intron 9 of 49) intron (NM_000350, intron 9 of 49) 41970 NM_000350 24 Hs.416707 NM_000350 HPRD:03408 ABCA4 ABC10|ABCR|ARMD2|CORD3|FFM|RMP|RP19|STGD|STGD1 ATP-binding cassette, sub-family A (ABC1), member 4 protein-coding 13-PTNLD9-TUMOR_peak_13302 chr12 70406957 70407068 + 9.99153 NA Intergenic L1PA2|LINE|L1 -229762 NM_014515 4848 Hs.133350 NM_014515 HPRD:05367 CNOT2 CDC36|NOT2|NOT2H CCR4-NOT transcription complex, subunit 2 protein-coding 13-PTNLD9-TUMOR_peak_16662 chr14 105154232 105154428 + 9.99153 NA Intergenic Intergenic -1613 NM_032714 64423 Hs.24956 NM_022489 HPRD:08648 INF2 C14orf151|C14orf173|CMTDIE|FSGS5|pp9484 inverted formin, FH2 and WH2 domain containing protein-coding 13-PTNLD9-TUMOR_peak_43621 chr6 5891902 5892019 + 9.99153 NA Intergenic L1PA2|LINE|L1 112317 NM_001278711 51299 Hs.103291 NM_016588 HPRD:07592 NRN1 NRN|dJ380B8.2 neuritin 1 protein-coding 13-PTNLD9-TUMOR_peak_19549 chr16 66930625 66930866 + 9.99153 NA Intergenic LTR7B|LTR|ERV1 16362 NM_020786 57546 Hs.632214 NM_020786 HPRD:15112 PDP2 PPM2C2 pyruvate dehyrogenase phosphatase catalytic subunit 2 protein-coding 13-PTNLD9-TUMOR_peak_41329 chr5 75668502 75668683 + 9.99153 NA Intergenic Intergenic -30488 NM_006633 10788 Hs.291030 NM_006633 HPRD:09253 IQGAP2 - IQ motif containing GTPase activating protein 2 protein-coding 13-PTNLD9-TUMOR_peak_1388 chr1 42217032 42217267 + 9.99153 NA intron (NM_024503, intron 1 of 8) intron (NM_024503, intron 1 of 8) 167229 NM_024503 59269 Hs.403972 NM_024503 HPRD:09442 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 13-PTNLD9-TUMOR_peak_7718 chr10 73848235 73848427 + 9.99122 NA 5' UTR (NM_014767, exon 2 of 12) 5' UTR (NM_014767, exon 2 of 12) 200 NM_001244950 9806 Hs.523009 NM_014767 HPRD:12146 SPOCK2 testican-2 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2 protein-coding 13-PTNLD9-TUMOR_peak_1797 chr1 53480520 53480670 + 9.99122 NA promoter-TSS (NM_001007099) promoter-TSS (NM_001007099) -15 NM_001007250 6342 Hs.476365 NM_002979 HPRD:01700 SCP2 NLTP|NSL-TP|SCP-2|SCP-CHI|SCP-X|SCPX sterol carrier protein 2 protein-coding 13-PTNLD9-TUMOR_peak_44118 chr6 24341525 24341715 + 9.99122 NA intron (NM_016356, intron 2 of 9) intron (NM_016356, intron 2 of 9) -15511 NM_181337 353219 Hs.697888 NM_181337 HPRD:09741 KAAG1 RU2AS kidney associated antigen 1 protein-coding 13-PTNLD9-TUMOR_peak_25653 chr19 55392862 55393022 + 9.99122 NA intron (NM_133271, intron 2 of 3) L1PREC2|LINE|L1 7393 NM_002000 2204 Hs.659872 NM_002000 HPRD:00914 FCAR CD89 Fc fragment of IgA, receptor for protein-coding 13-PTNLD9-TUMOR_peak_23379 chr18 60822779 60822882 + 9.99122 NA intron (NM_000633, intron 2 of 2) intron (NM_000633, intron 2 of 2) 163783 NM_000633 596 Hs.150749 NM_000633 HPRD:01045 BCL2 Bcl-2|PPP1R50 B-cell CLL/lymphoma 2 protein-coding 13-PTNLD9-TUMOR_peak_32681 chr22 18455269 18455635 + 9.99122 NA intron (NM_015241, intron 1 of 31) intron (NM_015241, intron 1 of 31) 8275 NR_030378 693233 NR_030378 miRBase:MI0003663 MIR648 MIRN648|hsa-mir-648 microRNA 648 ncRNA 13-PTNLD9-TUMOR_peak_46414 chr6 158481945 158482180 + 9.99122 NA intron (NM_003898, intron 7 of 26) Charlie10a|DNA|hAT-Charlie 43982 NM_001178088 8871 Hs.434494 NM_003898 HPRD:10259 SYNJ2 INPP5H synaptojanin 2 protein-coding 13-PTNLD9-TUMOR_peak_46381 chr6 157041151 157041342 + 9.99122 NA Intergenic CpG -57818 NM_017519 57492 Hs.291587 NM_017519 HPRD:10660 ARID1B 6A3-5|BAF250B|BRIGHT|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT rich interactive domain 1B (SWI1-like) protein-coding 13-PTNLD9-TUMOR_peak_31623 chr20 54797365 54797502 + 9.99122 NA Intergenic Intergenic -26355 NM_019888 4159 Hs.248018 NM_019888 HPRD:01115 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 13-PTNLD9-TUMOR_peak_43308 chr5 179246541 179246838 + 9.98911 NA intron (NM_001142299, intron 2 of 8) intron (NM_001142299, intron 2 of 8) -1153 NM_003900 8878 Hs.724025 NM_003900 HPRD:03319 SQSTM1 A170|OSIL|PDB3|ZIP3|p60|p62|p62B sequestosome 1 protein-coding 13-PTNLD9-TUMOR_peak_14134 chr12 122708087 122708246 + 9.98764 NA intron (NM_001278303, intron 1 of 4) L2a|LINE|L2 2231 NM_001278304 56616 Hs.169611 NM_019887 HPRD:05560 DIABLO DFNA64|SMAC diablo, IAP-binding mitochondrial protein protein-coding 13-PTNLD9-TUMOR_peak_9009 chr11 9590445 9590713 + 9.98764 NA Intergenic Intergenic -4649 NM_003390 7465 Hs.249441 NM_003390 HPRD:01907 WEE1 WEE1A|WEE1hu WEE1 G2 checkpoint kinase protein-coding 13-PTNLD9-TUMOR_peak_18755 chr16 22309524 22309905 + 9.97595 NA intron (NM_001258035, intron 1 of 19) intron (NM_001258035, intron 1 of 19) 1018 NM_001258035 55718 Hs.460298 NM_018119 HPRD:15155 POLR3E RPC5|SIN polymerase (RNA) III (DNA directed) polypeptide E (80kD) protein-coding 13-PTNLD9-TUMOR_peak_48081 chr7 76635601 76635783 + 9.96982 NA intron (NR_023383, intron 6 of 10) intron (NR_023383, intron 6 of 10) 25553 NR_023383 441263 Hs.675888 NR_023383 ENSG00000265479 DTX2P1-UPK3BP1-PMS2P11 PMS2L11|PMS2P11|PMSR6 DTX2P1-UPK3BP1-PMS2P11 readthrough transcribed pseudogene pseudo 13-PTNLD9-TUMOR_peak_5252 chr1 206290339 206290529 + 9.96643 NA Intergenic Intergenic -1787 NM_001007544 440712 Hs.662248 NM_001007544 C1orf186 - chromosome 1 open reading frame 186 protein-coding 13-PTNLD9-TUMOR_peak_27454 chr2 85968881 85969223 + 9.96643 NA Intergenic Intergenic -11857 NM_032827 84913 Hs.135569 NM_032827 ATOH8 HATH6|bHLHa21 atonal homolog 8 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_4642 chr1 181359822 181359996 + 9.96623 NA Intergenic Intergenic -92777 NM_001205293 777 Hs.437444 NM_000721 HPRD:03006 CACNA1E BII|CACH6|CACNL1A6|Cav2.3 calcium channel, voltage-dependent, R type, alpha 1E subunit protein-coding 13-PTNLD9-TUMOR_peak_14701 chr13 45496505 45496806 + 9.96623 NA Intergenic Intergenic 66958 NM_012345 26747 Hs.525006 NM_012345 HPRD:05073 NUFIP1 NUFIP|bA540M5.1 nuclear fragile X mental retardation protein interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_11059 chr11 102422873 102423035 + 9.96623 NA Intergenic Intergenic -21476 NM_002423 4316 Hs.2256 NM_002423 HPRD:01525 MMP7 MMP-7|MPSL1|PUMP-1 matrix metallopeptidase 7 (matrilysin, uterine) protein-coding 13-PTNLD9-TUMOR_peak_3409 chr1 147726283 147726423 + 9.96355 NA intron (NR_102404, intron 17 of 18).2 intron (NR_102404, intron 17 of 18).2 -7011 NR_120331 101927468 Hs.515867 NR_120331 LOC101927468 - uncharacterized LOC101927468 ncRNA 13-PTNLD9-TUMOR_peak_9296 chr11 20134137 20134281 + 9.96355 NA intron (NM_001111019, intron 26 of 27) intron (NM_001111019, intron 26 of 27) 47661 NM_001029865 120237 Hs.558604 NM_001029865 HPRD:18721 DBX1 - developing brain homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_16377 chr14 81851321 81851525 + 9.95939 NA intron (NM_001256430, intron 4 of 7) L2b|LINE|L2 42133 NM_033104 85439 Hs.14248 NM_033104 HPRD:10531 STON2 STN2|STNB|STNB2 stonin 2 protein-coding 13-PTNLD9-TUMOR_peak_979 chr1 32429771 32429962 + 9.95939 NA Intergenic Intergenic -25878 NM_080391 8073 Hs.470477 NM_003479 HPRD:03348 PTP4A2 HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b protein tyrosine phosphatase type IVA, member 2 protein-coding 13-PTNLD9-TUMOR_peak_50049 chr8 8932500 8932753 + 9.95939 NA Intergenic Intergenic 26671 NR_039804 100616350 NR_039804 miRBase:MI0017288 MIR4660 - microRNA 4660 ncRNA 13-PTNLD9-TUMOR_peak_2040 chr1 63782726 63782907 + 9.95939 NA promoter-TSS (NR_038252) promoter-TSS (NR_038252) 85 NR_038252 199899 Hs.116210 NR_038252 LINC00466 - long intergenic non-protein coding RNA 466 ncRNA 13-PTNLD9-TUMOR_peak_6897 chr10 33373299 33373490 + 9.95939 NA Intergenic Intergenic -126101 NM_002211 3688 Hs.643813 NM_002211 HPRD:00628 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) protein-coding 13-PTNLD9-TUMOR_peak_43131 chr5 174961166 174961282 + 9.95939 NA Intergenic Intergenic 55710 NM_022754 94081 Hs.369440 NM_022754 HPRD:18044 SFXN1 - sideroflexin 1 protein-coding 13-PTNLD9-TUMOR_peak_47824 chr7 71183681 71183850 + 9.95939 NA Intergenic L3|LINE|CR1 -411009 NR_037477 100500836 NR_037477 miRBase:MI0016419 MIR3914-1 - microRNA 3914-1 ncRNA 13-PTNLD9-TUMOR_peak_54755 chr9 127059855 127060061 + 9.95939 NA intron (NM_001166171, intron 2 of 10) intron (NM_001166171, intron 2 of 10) 5259 NM_001166169 10783 Hs.197071 NM_014397 HPRD:05348 NEK6 SID6-1512 NIMA-related kinase 6 protein-coding 13-PTNLD9-TUMOR_peak_47226 chr7 34788110 34788261 + 9.95939 NA intron (NR_015356, intron 2 of 4) MIR|SINE|MIR 9699 NR_033665 404744 Hs.487951 NM_207283 HPRD:12265 NPSR1-AS1 AAA1 NPSR1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_39284 chr4 125099209 125099397 + 9.95939 NA Intergenic Intergenic 380286 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LOC101927087 - uncharacterized LOC101927087 ncRNA 13-PTNLD9-TUMOR_peak_45471 chr6 71958138 71958268 + 9.95939 NA Intergenic Intergenic -40274 NM_024576 79627 Hs.648434 NM_024576 OGFRL1 dJ331H24.1 opioid growth factor receptor-like 1 protein-coding 13-PTNLD9-TUMOR_peak_12064 chr12 8130322 8130561 + 9.95939 NA Intergenic Intergenic -41549 NM_006931 6515 Hs.419240 NM_006931 HPRD:00686 SLC2A3 GLUT3 solute carrier family 2 (facilitated glucose transporter), member 3 protein-coding 13-PTNLD9-TUMOR_peak_18491 chr16 10747027 10747255 + 9.95939 NA intron (NM_144674, intron 5 of 6) intron (NM_144674, intron 5 of 6) 41661 NM_144674 146279 Hs.143519 NM_144674 HPRD:08736 TEKT5 CT149 tektin 5 protein-coding 13-PTNLD9-TUMOR_peak_17143 chr15 43029276 43029500 + 9.95939 NA promoter-TSS (NM_138477) promoter-TSS (NM_138477) 29 NM_138477 146059 Hs.599232 NM_138477 HPRD:08470 CDAN1 CDA1|CDAI|CDAN1A|DLT|PRO1295 codanin 1 protein-coding 13-PTNLD9-TUMOR_peak_37189 chr3 189721558 189721876 + 9.95939 NA intron (NM_001134418, intron 1 of 14) intron (NM_001134418, intron 1 of 14) 117191 NM_018192 55214 Hs.374191 NM_018192 HPRD:17270 LEPREL1 MCVD|MLAT4|P3H2 leprecan-like 1 protein-coding 13-PTNLD9-TUMOR_peak_1183 chr1 38042312 38042418 + 9.95939 NA intron (NM_013285, intron 8 of 15) intron (NM_013285, intron 8 of 15) 19221 NM_013285 29889 Hs.75528 NM_013285 HPRD:11006 GNL2 HUMAUANTIG|NGP1|Ngp-1 guanine nucleotide binding protein-like 2 (nucleolar) protein-coding 13-PTNLD9-TUMOR_peak_11313 chr11 116342305 116342508 + 9.95939 NA Intergenic Intergenic 301308 NM_032725 84811 Hs.437341 NM_032725 HPRD:11307 BUD13 Cwc26|fSAP71 BUD13 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_29479 chr2 199306058 199306174 + 9.95939 NA Intergenic Intergenic -66295 NR_110267 101927619 Hs.632942 NR_110267 LOC101927619 - uncharacterized LOC101927619 ncRNA 13-PTNLD9-TUMOR_peak_56086 chrX 68835872 68835993 + 9.95939 NA promoter-TSS (NM_001399) promoter-TSS (NM_001399) 21 NM_001005609 1896 Hs.105407 NM_001399 HPRD:02347 EDA ECTD1|ED1|ED1-A1|ED1-A2|EDA-A1|EDA-A2|EDA1|EDA2|HED|HED1|ODT1|STHAGX1|XHED|XLHED ectodysplasin A protein-coding 13-PTNLD9-TUMOR_peak_21311 chr17 45596432 45596577 + 9.95939 NA Intergenic Intergenic -11940 NM_006310 9520 Hs.443837 NM_006310 HPRD:07366 NPEPPS AAP-S|MP100|PSA aminopeptidase puromycin sensitive protein-coding 13-PTNLD9-TUMOR_peak_45729 chr6 90894713 90894851 + 9.95939 NA intron (NM_021813, intron 4 of 8) intron (NM_021813, intron 4 of 8) 111845 NM_021813 60468 Hs.269764 NM_021813 HPRD:12012 BACH2 BTBD25 BTB and CNC homology 1, basic leucine zipper transcription factor 2 protein-coding 13-PTNLD9-TUMOR_peak_38199 chr4 38859357 38859655 + 9.95939 NA Intergenic Intergenic -1068 NM_006068 10333 Hs.575090 NM_006068 HPRD:05656 TLR6 CD286 toll-like receptor 6 protein-coding 13-PTNLD9-TUMOR_peak_14410 chr13 22010064 22010279 + 9.95939 NA intron (NM_153251, intron 1 of 11) LTR16A|LTR|ERVL 23337 NM_153251 253832 Hs.564611 NM_153251 ZDHHC20 4933421L13Rik|DHHC-20 zinc finger, DHHC-type containing 20 protein-coding 13-PTNLD9-TUMOR_peak_45033 chr6 42515324 42515628 + 9.95939 NA Intergenic Intergenic -16284 NM_015255 23304 Hs.529925 NM_015255 HPRD:09853 UBR2 C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3 ubiquitin protein ligase E3 component n-recognin 2 protein-coding 13-PTNLD9-TUMOR_peak_23758 chr19 5850824 5850970 + 9.95939 NA intron (NR_110740, intron 1 of 3) AluJb|SINE|Alu 588 NM_000149 2525 Hs.169238 NM_000149 HPRD:00196 FUT3 CD174|FT3B|FucT-III|LE|Les fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group) protein-coding 13-PTNLD9-TUMOR_peak_54696 chr9 124888674 124888794 + 9.95934 NA Intergenic Intergenic -6288 NR_039690 100616312 NR_039690 miRBase:MI0016831 MIR4478 - microRNA 4478 ncRNA 13-PTNLD9-TUMOR_peak_31036 chr20 38545015 38545403 + 9.95831 NA Intergenic Intergenic -87894 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 - long intergenic non-protein coding RNA 1370 ncRNA 13-PTNLD9-TUMOR_peak_33911 chr3 14962698 14962896 + 9.95831 NA intron (NM_152536, intron 13 of 19) intron (NM_152536, intron 13 of 19) 26215 NR_046254 100505641 Hs.517821 NR_046251 ENSG00000225733 FGD5-AS1 - FGD5 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_2563 chr1 95113836 95114056 + 9.95831 NA Intergenic Intergenic -106533 NM_001993 2152 Hs.62192 NM_001993 HPRD:00603 F3 CD142|TF|TFA coagulation factor III (thromboplastin, tissue factor) protein-coding 13-PTNLD9-TUMOR_peak_33012 chr22 26867624 26867731 + 9.95831 NA intron (NR_073135, intron 6 of 13) intron (NR_073135, intron 6 of 13) 7970 NR_073136 89781 Hs.474436 NM_022081 HPRD:05983 HPS4 LE Hermansky-Pudlak syndrome 4 protein-coding 13-PTNLD9-TUMOR_peak_16001 chr14 64331085 64331285 + 9.95831 NA intron (NM_182914, intron 1 of 115) intron (NM_182914, intron 1 of 115) 11502 NM_182914 23224 Hs.745014 NM_015180 HPRD:09763 SYNE2 EDMD5|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing, nuclear envelope 2 protein-coding 13-PTNLD9-TUMOR_peak_30195 chr2 241835523 241835716 + 9.95831 NA promoter-TSS (NM_001085437) promoter-TSS (NM_001085437) -46 NM_001085437 79919 Hs.193745 NM_024861 HPRD:08003 C2orf54 - chromosome 2 open reading frame 54 protein-coding 13-PTNLD9-TUMOR_peak_35701 chr3 125626252 125626454 + 9.95831 NA Intergenic Intergenic -9091 NR_024250 100125556 Hs.553949 NR_024250 ENSG00000171084 FAM86JP - family with sequence similarity 86, member A pseudogene pseudo 13-PTNLD9-TUMOR_peak_14864 chr13 76056437 76056709 + 9.95831 NA promoter-TSS (NM_014832) promoter-TSS (NM_014832) -323 NM_001286659 9882 Hs.210891 NM_014832 HPRD:18164 TBC1D4 AS160 TBC1 domain family, member 4 protein-coding 13-PTNLD9-TUMOR_peak_37260 chr3 192607077 192607239 + 9.95831 NA intron (NM_178496, intron 1 of 1) intron (NM_178496, intron 1 of 1) 28792 NM_178496 151963 Hs.151443 NM_178496 HPRD:14092 MB21D2 C3orf59 Mab-21 domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_48954 chr7 127672063 127672257 + 9.95831 NA intron (NM_014390, intron 16 of 23) CpG -1158 NM_022143 64101 Hs.655003 NM_022143 HPRD:10060 LRRC4 NGL-2 leucine rich repeat containing 4 protein-coding 13-PTNLD9-TUMOR_peak_28326 chr2 122827886 122828075 + 9.95831 NA Intergenic Intergenic 314859 NR_048557 7247 Hs.75066 NM_004622 HPRD:08993 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 13-PTNLD9-TUMOR_peak_36004 chr3 134039682 134039872 + 9.95831 NA Intergenic Intergenic 46927 NR_106885 102466744 NR_106885 MIR6827 hsa-mir-6827 microRNA 6827 ncRNA 13-PTNLD9-TUMOR_peak_3925 chr1 156240187 156240450 + 9.95831 NA intron (NM_015327, intron 7 of 21) MLT1H1|LTR|ERVL-MaLR 12302 NM_015327 23381 Hs.516837 NM_015327 HPRD:16869 SMG5 EST1B|LPTS-RP1|LPTSRP1|SMG-5 SMG5 nonsense mediated mRNA decay factor protein-coding 13-PTNLD9-TUMOR_peak_27978 chr2 109859406 109859620 + 9.95831 NA intron (NM_001099289, intron 1 of 9) intron (NM_001099289, intron 1 of 9) 70568 NR_036224 100423027 NR_036224 miRBase:MI0015870 MIR4266 - microRNA 4266 ncRNA 13-PTNLD9-TUMOR_peak_28448 chr2 131261016 131261279 + 9.95831 NA exon (NM_001277406, exon 3 of 15) exon (NM_001277406, exon 3 of 15) 5661 NM_001277406 653269 Hs.558782 NM_001277406 POTEI POTE2beta POTE ankyrin domain family, member I protein-coding 13-PTNLD9-TUMOR_peak_51508 chr8 104185497 104185612 + 9.95831 NA intron (NM_001024372, intron 1 of 1) intron (NM_001024372, intron 1 of 1) -1186 NR_109954 100499183 Hs.654812 NR_034092 ENSG00000247081 BAALC-AS1 - BAALC antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_7501 chr10 63855111 63855336 + 9.95831 NA 3' UTR (NM_032199, exon 10 of 10) 3' UTR (NM_032199, exon 10 of 10) 46253 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT rich interactive domain 5B (MRF1-like) protein-coding 13-PTNLD9-TUMOR_peak_52607 chr9 751664 751892 + 9.95357 NA Intergenic MER105|DNA|DNA 44972 NM_153186 23189 Hs.306764 NM_015158 HPRD:09651 KANK1 ANKRD15|CPSQ2|KANK KN motif and ankyrin repeat domains 1 protein-coding 13-PTNLD9-TUMOR_peak_47325 chr7 43675794 43675968 + 9.95357 NA intron (NR_047701, intron 7 of 7) intron (NR_047701, intron 7 of 7) 53189 NM_004760 9263 Hs.709489 NM_004760 HPRD:05288 STK17A DRAK1 serine/threonine kinase 17a protein-coding 13-PTNLD9-TUMOR_peak_1793 chr1 53216519 53216846 + 9.95357 NA intron (NM_024646, intron 1 of 13) AluJb|SINE|Alu 24551 NM_024646 79699 Hs.476280 NM_024646 HPRD:13356 ZYG11B ZYG11 zyg-11 family member B, cell cycle regulator protein-coding 13-PTNLD9-TUMOR_peak_2533 chr1 94521051 94521357 + 9.95357 NA intron (NM_000350, intron 15 of 49) intron (NM_000350, intron 15 of 49) 65501 NM_000350 24 Hs.416707 NM_000350 HPRD:03408 ABCA4 ABC10|ABCR|ARMD2|CORD3|FFM|RMP|RP19|STGD|STGD1 ATP-binding cassette, sub-family A (ABC1), member 4 protein-coding 13-PTNLD9-TUMOR_peak_29172 chr2 177005347 177005724 + 9.95357 NA Intergenic CpG -3709 NR_038435 100506783 Hs.667234 NR_038435 HOXD-AS2 - HOXD cluster antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_50599 chr8 37002355 37002599 + 9.95357 NA Intergenic Intergenic 348954 NR_121620 100507420 Hs.105962 NR_121620 LOC100507420 - uncharacterized LOC100507420 ncRNA 13-PTNLD9-TUMOR_peak_9196 chr11 16813224 16813444 + 9.95357 NA intron (NM_175058, intron 19 of 22) intron (NM_175058, intron 19 of 22) 53186 NM_014267 10944 Hs.645792 NM_014267 C11orf58 IMAGE145052|SMAP chromosome 11 open reading frame 58 protein-coding 13-PTNLD9-TUMOR_peak_4480 chr1 175238379 175238578 + 9.95357 NA Intergenic MER41C|LTR|ERV1 -76249 NM_001162894 9674 Hs.518138 NM_014656 HPRD:13776 KIAA0040 - KIAA0040 protein-coding 13-PTNLD9-TUMOR_peak_22640 chr18 12420257 12420532 + 9.95357 NA exon (NM_006553, exon 2 of 7) exon (NM_006553, exon 2 of 7) 12499 NM_006553 10650 Hs.514718 NM_006553 HPRD:09981 SLMO1 C18orf43|HFL-EDDG1|PRELID3A slowmo homolog 1 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_4088 chr1 160175751 160176063 + 9.94855 NA non-coding (NR_123725, exon 3 of 5) non-coding (NR_123725, exon 3 of 5) 798 NR_123724 8682 Hs.517216 NM_003768 HPRD:04579 PEA15 HMAT1|HUMMAT1H|MAT1|MAT1H|PEA-15|PED phosphoprotein enriched in astrocytes 15 protein-coding 13-PTNLD9-TUMOR_peak_37326 chr3 194293103 194293445 + 9.94855 NA Intergenic Intergenic -11723 NR_047574 100507297 Hs.586059 NR_047573 TMEM44-AS1 - TMEM44 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_3480 chr1 149374594 149374736 + 9.94855 NA intron (NR_027484, intron 3 of 6) MLT1E1A|LTR|ERVL-MaLR 5371 NR_027484 100132417 Hs.77424 NM_001128589 FCGR1C CD64c|FCRIC|IGFR1|IGFRC Fc fragment of IgG, high affinity Ic, receptor (CD64), pseudogene pseudo 13-PTNLD9-TUMOR_peak_50996 chr8 57183313 57183654 + 9.94384 NA Intergenic Intergenic 49758 NM_138969 195814 Hs.170673 NM_138969 HPRD:12351 SDR16C5 RDH#2|RDH-E2|RDHE2 short chain dehydrogenase/reductase family 16C, member 5 protein-coding 13-PTNLD9-TUMOR_peak_43579 chr6 4292061 4292274 + 9.94384 NA Intergenic Intergenic 155861 NR_103764 100507506 Hs.665936 NR_103764 ENSG00000234817 LOC100507506 - uncharacterized LOC100507506 ncRNA 13-PTNLD9-TUMOR_peak_44236 chr6 26305446 26305771 + 9.94384 NA Intergenic Intergenic -19881 NM_003543 8365 Hs.591790 NM_003543 HPRD:11919 HIST1H4H H4/h|H4FH histone cluster 1, H4h protein-coding 13-PTNLD9-TUMOR_peak_6860 chr10 31607096 31607364 + 9.94384 NA promoter-TSS (NM_001174096) promoter-TSS (NM_001174096) 794 NR_024284 220930 Hs.372654 NR_024284 ZEB1-AS1 - ZEB1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_10037 chr11 61801032 61801309 + 9.94384 NA Intergenic Intergenic -66038 NM_002032 2495 Hs.524910 NM_002032 HPRD:00615 FTH1 FHC|FTH|FTHL6|HFE5|PIG15|PLIF ferritin, heavy polypeptide 1 protein-coding 13-PTNLD9-TUMOR_peak_42175 chr5 135356194 135356411 + 9.94384 NA Intergenic Intergenic -8282 NM_000358 7045 Hs.369397 NM_000358 HPRD:03409 TGFBI BIGH3|CDB1|CDG2|CDGG1|CSD|CSD1|CSD2|CSD3|EBMD|LCD1 transforming growth factor, beta-induced, 68kDa protein-coding 13-PTNLD9-TUMOR_peak_25057 chr19 42528777 42528989 + 9.94384 NA intron (NM_001301030, intron 11 of 18) intron (NM_001301030, intron 11 of 18) -30455 NM_152296 478 Hs.515427 NM_152296 HPRD:01666 ATP1A3 AHC2|DYT12|RDP ATPase, Na+/K+ transporting, alpha 3 polypeptide protein-coding 13-PTNLD9-TUMOR_peak_1386 chr1 42179408 42179523 + 9.94384 NA intron (NM_024503, intron 1 of 8) L3|LINE|CR1 204913 NM_024503 59269 Hs.403972 NM_024503 HPRD:09442 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 13-PTNLD9-TUMOR_peak_29012 chr2 169176859 169177104 + 9.94384 NA Intergenic Intergenic -72876 NM_013233 27347 Hs.276271 NM_013233 HPRD:09627 STK39 DCHT|PASK|SPAK serine threonine kinase 39 protein-coding 13-PTNLD9-TUMOR_peak_29664 chr2 207845894 207846146 + 9.94384 NA Intergenic Intergenic 41742 NM_173077 130749 Hs.684103 NM_173077 HPRD:07098 CPO - carboxypeptidase O protein-coding 13-PTNLD9-TUMOR_peak_24037 chr19 12170433 12170604 + 9.94384 NA Intergenic Intergenic -5028 NM_001136501 284391 Hs.646391 NM_001136501 ZNF844 - zinc finger protein 844 protein-coding 13-PTNLD9-TUMOR_peak_15863 chr14 56914349 56914467 + 9.94384 NA Intergenic L1PA2|LINE|L1 -132103 NM_017799 54916 Hs.497253 NM_017799 HPRD:12624 TMEM260 C14orf101 transmembrane protein 260 protein-coding 13-PTNLD9-TUMOR_peak_1684 chr1 47953646 47953752 + 9.94384 NA Intergenic Intergenic 52010 NM_004474 2306 Hs.166188 NM_004474 HPRD:03735 FOXD2 FKHL17|FREAC-9|FREAC9 forkhead box D2 protein-coding 13-PTNLD9-TUMOR_peak_27433 chr2 85758792 85758920 + 9.94384 NA Intergenic AluJb|SINE|Alu 7153 NR_038942 100630918 Hs.66049 NR_038942 LOC100630918 - uncharacterized LOC100630918 ncRNA 13-PTNLD9-TUMOR_peak_27848 chr2 101847312 101847424 + 9.94384 NA Intergenic Intergenic -21977 NM_017546 55571 Hs.744080 NM_017546 HPRD:12812 CNOT11 C2orf29 CCR4-NOT transcription complex, subunit 11 protein-coding 13-PTNLD9-TUMOR_peak_49084 chr7 130582948 130583189 + 9.93543 NA intron (NR_110472, intron 2 of 3) intron (NR_110472, intron 2 of 3) 15001 NR_110472 378805 Hs.150556 NM_001085379 ENSG00000226380 LINC-PINT LincRNA-Pint|MKLN1-AS1|PINT long intergenic non-protein coding RNA, p53 induced transcript ncRNA 13-PTNLD9-TUMOR_peak_40198 chr5 1599565 1599664 + 9.93421 NA non-coding (NR_003713, exon 4 of 4) non-coding (NR_003713, exon 4 of 4) -4968 NR_003263 728609 Hs.379186 NR_003263 SDHAP3 SDHACL|SDHAL succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 3 pseudo 13-PTNLD9-TUMOR_peak_15542 chr14 35183848 35184172 + 9.93421 NA promoter-TSS (NM_138638) promoter-TSS (NM_138638) 19 NR_028131 1073 Hs.180141 NM_021914 HPRD:03262 CFL2 NEM7 cofilin 2 (muscle) protein-coding 13-PTNLD9-TUMOR_peak_43582 chr6 4317319 4317625 + 9.93183 NA Intergenic Intergenic 181166 NR_103764 100507506 Hs.665936 NR_103764 ENSG00000234817 LOC100507506 - uncharacterized LOC100507506 ncRNA 13-PTNLD9-TUMOR_peak_3506 chr1 149773235 149773388 + 9.93183 NA intron (NM_001161334, intron 1 of 1) intron (NM_001161334, intron 1 of 1) 10617 NM_001161334 440689 Hs.632451 NM_001024599 HPRD:18639 HIST2H2BF - histone cluster 2, H2bf protein-coding 13-PTNLD9-TUMOR_peak_3016 chr1 117458746 117458863 + 9.93183 NA intron (NM_020440, intron 1 of 8) intron (NM_020440, intron 1 of 8) 6115 NM_020440 5738 Hs.418093 NM_020440 HPRD:03124 PTGFRN CD315|CD9P-1|EWI-F|FPRP|SMAP-6 prostaglandin F2 receptor inhibitor protein-coding 13-PTNLD9-TUMOR_peak_11276 chr11 114068728 114069102 + 9.93183 NA intron (NM_001018011, intron 4 of 6) intron (NM_001018011, intron 4 of 6) -97620 NM_006169 4837 Hs.503911 NM_006169 HPRD:02478 NNMT - nicotinamide N-methyltransferase protein-coding 13-PTNLD9-TUMOR_peak_28123 chr2 113836052 113836583 + 9.92733 NA Intergenic MER57E1|LTR|ERV1 6422 NM_032556 84639 Hs.306974 NM_032556 HPRD:17144 IL1F10 FIL1-theta|IL-1HY2|IL-38|IL1-theta|IL1HY2 interleukin 1 family, member 10 (theta) protein-coding 13-PTNLD9-TUMOR_peak_28430 chr2 130902503 130902753 + 9.92733 NA promoter-TSS (NM_001258307) promoter-TSS (NM_001258307) 79 NM_001258307 91409 Hs.29383 NM_207310 HPRD:08534 CCDC74B - coiled-coil domain containing 74B protein-coding 13-PTNLD9-TUMOR_peak_36611 chr3 161034187 161034345 + 9.92733 NA Intergenic Intergenic 55605 NM_001040100 165679 Hs.369104 NM_145035 SPTSSB ADMP|C3orf57|SSSPTB serine palmitoyltransferase, small subunit B protein-coding 13-PTNLD9-TUMOR_peak_16941 chr15 31627974 31628246 + 9.92060 NA intron (NM_015995, intron 1 of 1) intron (NM_015995, intron 1 of 1) 9027 NM_015995 51621 Hs.525752 NM_015995 HPRD:05620 KLF13 BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1 Kruppel-like factor 13 protein-coding 13-PTNLD9-TUMOR_peak_16460 chr14 92573018 92573142 + 9.91585 NA promoter-TSS (NR_028462) promoter-TSS (NR_028462) -115 NR_028453 4287 Hs.532632 NM_004993 HPRD:06131 ATXN3 AT3|ATX3|JOS|MJD|MJD1|SCA3 ataxin 3 protein-coding 13-PTNLD9-TUMOR_peak_30183 chr2 241313615 241313957 + 9.91585 NA Intergenic Intergenic -61329 NM_002081 2817 Hs.328232 NM_002081 HPRD:02671 GPC1 glypican glypican 1 protein-coding 13-PTNLD9-TUMOR_peak_17939 chr15 89525832 89525997 + 9.91585 NA Intergenic Intergenic -69251 NM_001114614 4240 Hs.3745 NM_005928 HPRD:03789 MFGE8 BA46|EDIL1|HMFG|HsT19888|MFG-E8|MFGM|OAcGD3S|SED1|SPAG10|hP47 milk fat globule-EGF factor 8 protein protein-coding 13-PTNLD9-TUMOR_peak_13848 chr12 111282767 111283156 + 9.91585 NA Intergenic Intergenic -1803 NM_001286243 160762 Hs.437141 NM_152591 HPRD:08765 CCDC63 ODA5 coiled-coil domain containing 63 protein-coding 13-PTNLD9-TUMOR_peak_26576 chr2 36824832 36825001 + 9.91585 NA intron (NM_001042548, intron 1 of 8) CpG 416 NM_001042548 9637 Hs.258563 NM_005102 HPRD:09213 FEZ2 HUM3CL fasciculation and elongation protein zeta 2 (zygin II) protein-coding 13-PTNLD9-TUMOR_peak_16454 chr14 92338965 92339233 + 9.91585 NA intron (NM_006329, intron 10 of 10) intron (NM_006329, intron 10 of 10) -5219 NM_001128596 123036 Hs.510262 NM_152332 HPRD:11375 TC2N C14orf47|C2CD1|MTAC2D1|Tac2-N tandem C2 domains, nuclear protein-coding 13-PTNLD9-TUMOR_peak_6825 chr10 30474912 30475153 + 9.91585 NA Intergenic Intergenic -25749 NR_120653 101929279 Hs.559153 NR_120653 LOC101929279 - uncharacterized LOC101929279 ncRNA 13-PTNLD9-TUMOR_peak_22204 chr17 77824466 77824638 + 9.91585 NA Intergenic Intergenic -11339 NM_003655 8535 Hs.405046 NM_003655 HPRD:04357 CBX4 NBP16|PC2 chromobox homolog 4 protein-coding 13-PTNLD9-TUMOR_peak_22470 chr18 3541956 3542068 + 9.91585 NA intron (NM_001242764, intron 6 of 9) intron (NM_001242764, intron 6 of 9) -52100 NR_024101 649446 Hs.19872 NM_001039796 DLGAP1-AS1 HsT914 DLGAP1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_44435 chr6 30130879 30130992 + 9.91585 NA promoter-TSS (NM_033229).3 promoter-TSS (NM_033229).3 -48 NM_033229 89870 Hs.591789 NM_033229 HPRD:15551 TRIM15 RNF93|ZNF178|ZNFB7 tripartite motif containing 15 protein-coding 13-PTNLD9-TUMOR_peak_43886 chr6 14212405 14212565 + 9.91585 NA Intergenic Intergenic 73200 NR_108097 102216342 Hs.563409 NR_108096 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 13-PTNLD9-TUMOR_peak_7403 chr10 54211565 54211857 + 9.91585 NA intron (NR_120641, intron 3 of 3) intron (NR_120641, intron 3 of 3) 3321 NR_120642 101928687 Hs.380362 NR_120641 ENSG00000231131 LINC01468 lnc-MBL2-4 long intergenic non-protein coding RNA 1468 ncRNA 13-PTNLD9-TUMOR_peak_2065 chr1 64446830 64447277 + 9.91585 NA intron (NM_001083592, intron 1 of 6) intron (NM_001083592, intron 1 of 6) 130835 NR_110666 101927034 Hs.680824 NR_110665 ENSG00000223949 ROR1-AS1 - ROR1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_48593 chr7 101045470 101045609 + 9.91530 NA intron (NM_133457, intron 1 of 12) intron (NM_133457, intron 1 of 12) 39438 NM_001278563 136227 Hs.654854 NM_133457 HPRD:16405 COL26A1 EMI6|EMID2|EMU2|SH2B collagen, type XXVI, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_45534 chr6 76311358 76311889 + 9.91530 NA promoter-TSS (NM_015571) promoter-TSS (NM_015571) 1 NM_001100409 26054 Hs.485784 NM_015571 HPRD:05417 SENP6 SSP1|SUSP1 SUMO1/sentrin specific peptidase 6 protein-coding 13-PTNLD9-TUMOR_peak_34495 chr3 48468361 48468651 + 9.91530 NA intron (NM_001130082, intron 1 of 37) L2a|LINE|L2 2366 NM_002673 5364 Hs.476209 NM_002673 HPRD:03032 PLXNB1 PLEXIN-B1|PLXN5|SEP plexin B1 protein-coding 13-PTNLD9-TUMOR_peak_9122 chr11 13029708 13029872 + 9.91530 NA Intergenic Intergenic -1180 NM_001080521 644943 Hs.134650 NM_001080521 RASSF10 - Ras association (RalGDS/AF-6) domain family (N-terminal) member 10 protein-coding 13-PTNLD9-TUMOR_peak_4316 chr1 167772605 167772860 + 9.91530 NA Intergenic Intergenic 81545 NM_001146191 9019 Hs.493919 NM_003953 HPRD:05086 MPZL1 MPZL1b|PZR|PZR1b|PZRa|PZRb myelin protein zero-like 1 protein-coding 13-PTNLD9-TUMOR_peak_2971 chr1 116038375 116038485 + 9.91530 NA Intergenic L2b|LINE|L2 -146144 NM_001172411 81839 Hs.515130 NM_138959 HPRD:18279 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 13-PTNLD9-TUMOR_peak_35239 chr3 106484300 106484501 + 9.91530 NA Intergenic LTR18A|LTR|ERVL 475085 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 13-PTNLD9-TUMOR_peak_11508 chr11 124543635 124543841 + 9.91530 NA promoter-TSS (NM_017425) promoter-TSS (NM_017425) -2 NM_017425 53340 Hs.286233 NM_017425 HPRD:12272 SPA17 CT22|SP17|SP17-1 sperm autoantigenic protein 17 protein-coding 13-PTNLD9-TUMOR_peak_2541 chr1 94626411 94626593 + 9.90685 NA Intergenic Intergenic -39797 NM_000350 24 Hs.416707 NM_000350 HPRD:03408 ABCA4 ABC10|ABCR|ARMD2|CORD3|FFM|RMP|RP19|STGD|STGD1 ATP-binding cassette, sub-family A (ABC1), member 4 protein-coding 13-PTNLD9-TUMOR_peak_19417 chr16 56725865 56726076 + 9.90685 NA Intergenic Intergenic 9588 NM_005952 4501 Hs.374950 NM_005952 HPRD:01130 MT1X MT-1l|MT1 metallothionein 1X protein-coding 13-PTNLD9-TUMOR_peak_32289 chr21 38905511 38905752 + 9.90685 NA Intergenic LTR41|LTR|ERVL 113029 NM_001396 1859 Hs.368240 NM_001396 HPRD:09018 DYRK1A DYRK|DYRK1|HP86|MNB|MNBH|MRD7 dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A protein-coding 13-PTNLD9-TUMOR_peak_27365 chr2 79944569 79944900 + 9.90685 NA intron (NM_001282597, intron 2 of 18) intron (NM_001282597, intron 2 of 18) -68249 NR_036231 100422888 NR_036231 miRBase:MI0015877 MIR4264 - microRNA 4264 ncRNA 13-PTNLD9-TUMOR_peak_23801 chr19 7441127 7441375 + 9.90685 NA Intergenic Intergenic -18748 NM_015318 23370 Hs.465761 NM_015318 HPRD:12479 ARHGEF18 P114-RhoGEF Rho/Rac guanine nucleotide exchange factor (GEF) 18 protein-coding 13-PTNLD9-TUMOR_peak_31465 chr20 49388104 49388268 + 9.90685 NA Intergenic Intergenic -23245 NM_017843 55653 Hs.381178 NM_017843 HPRD:06314 BCAS4 CNOL breast carcinoma amplified sequence 4 protein-coding 13-PTNLD9-TUMOR_peak_17588 chr15 71571914 71572040 + 9.90685 NA intron (NM_024817, intron 5 of 16) intron (NM_024817, intron 5 of 16) -90579 NR_120350 101929196 Hs.680472 NR_120348 LOC101929196 - uncharacterized LOC101929196 ncRNA 13-PTNLD9-TUMOR_peak_39991 chr4 185370139 185370297 + 9.90685 NA intron (NM_002199, intron 1 of 8) intron (NM_002199, intron 1 of 8) 25508 NM_002199 3660 Hs.654566 NM_002199 HPRD:00962 IRF2 IRF-2 interferon regulatory factor 2 protein-coding 13-PTNLD9-TUMOR_peak_18338 chr16 3996236 3996417 + 9.90685 NA Intergenic Intergenic 4119 NR_120311 102724927 Hs.364739 NR_120311 LOC102724927 - uncharacterized LOC102724927 ncRNA 13-PTNLD9-TUMOR_peak_34372 chr3 43859395 43859561 + 9.90685 NA Intergenic Intergenic 127103 NM_016006 51099 Hs.19385 NM_016006 ABHD5 CDS|CGI58|IECN2|NCIE2 abhydrolase domain containing 5 protein-coding 13-PTNLD9-TUMOR_peak_39606 chr4 150744977 150745127 + 9.90685 NA Intergenic Intergenic -254374 NM_001040260 166614 Hs.591683 NM_152619 HPRD:13122 DCLK2 CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2 doublecortin-like kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_30313 chr20 3263388 3263679 + 9.90685 NA intron (NM_001009984, intron 27 of 36) L2a|LINE|L2 -43646 NM_001174089 83959 Hs.105607 NM_032034 HPRD:15392 SLC4A11 BTR1|CDPD1|CHED2|NABC1|dJ794I6.2 solute carrier family 4, sodium borate transporter, member 11 protein-coding 13-PTNLD9-TUMOR_peak_34682 chr3 53272254 53272486 + 9.90685 NA intron (NM_001258028, intron 4 of 14) intron (NM_001258028, intron 4 of 14) 17760 NM_001135055 7086 Hs.89643 NM_001064 HPRD:06001 TKT HEL107|TK|TKT1 transketolase protein-coding 13-PTNLD9-TUMOR_peak_30375 chr20 8341960 8342182 + 9.90685 NA intron (NM_015192, intron 2 of 31) MER5A|DNA|hAT-Charlie 229159 NM_015192 23236 Hs.431173 NM_015192 HPRD:06177 PLCB1 EIEE12|PI-PLC|PLC-154|PLC-I|PLC154|PLCB1A|PLCB1B phospholipase C, beta 1 (phosphoinositide-specific) protein-coding 13-PTNLD9-TUMOR_peak_6530 chr10 13749440 13749643 + 9.90685 NA intron (NM_018027, intron 12 of 24) intron (NM_018027, intron 12 of 24) 120602 NM_003675 8559 Hs.729158 NM_003675 HPRD:05407 PRPF18 PRP18|hPrp18 pre-mRNA processing factor 18 protein-coding 13-PTNLD9-TUMOR_peak_46383 chr6 157274713 157274906 + 9.90685 NA intron (NM_020732, intron 5 of 19) intron (NM_020732, intron 5 of 19) -173944 NR_039676 100616154 NR_039676 miRBase:MI0016817 MIR4466 - microRNA 4466 ncRNA 13-PTNLD9-TUMOR_peak_273 chr1 8292287 8292414 + 9.90685 NA Intergenic Intergenic -85795 NM_001080397 50651 Hs.463036 NM_001080397 ENSG00000162426 SLC45A1 DNB5 solute carrier family 45, member 1 protein-coding 13-PTNLD9-TUMOR_peak_44050 chr6 19852187 19852333 + 9.90685 NA Intergenic Intergenic 14659 NM_001546 3400 Hs.519601 NM_001546 ID4 IDB4|bHLHb27 inhibitor of DNA binding 4, dominant negative helix-loop-helix protein protein-coding 13-PTNLD9-TUMOR_peak_8102 chr10 99167039 99167148 + 9.90685 NA Intergenic Intergenic -5966 NM_001145114 23223 Hs.434251 NM_015179 HPRD:11103 RRP12 KIAA0690 ribosomal RNA processing 12 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_52846 chr9 19162919 19163220 + 9.90480 NA Intergenic AluJb|SINE|Alu -35465 NM_001122 123 Hs.3416 NM_001122 HPRD:00057 PLIN2 ADFP|ADRP perilipin 2 protein-coding 13-PTNLD9-TUMOR_peak_43510 chr6 3160470 3160685 + 9.90480 NA Intergenic Intergenic -2794 NM_001069 7280 Hs.654543 NM_001069 HPRD:01852 TUBB2A CDCBM5|TUBB|TUBB2|dJ40E16.7 tubulin, beta 2A class IIa protein-coding 13-PTNLD9-TUMOR_peak_4542 chr1 178577627 178577884 + 9.89703 NA Intergenic MIRb|SINE|MIR 65824 NR_033186 400798 Hs.668085 NM_207467 HPRD:13417 C1orf220 - chromosome 1 open reading frame 220 ncRNA 13-PTNLD9-TUMOR_peak_45589 chr6 81348528 81348676 + 9.89703 NA Intergenic Intergenic 532258 NM_183050 594 Hs.654441 NM_000056 HPRD:02011 BCKDHB E1B|dJ279A18.1 branched chain keto acid dehydrogenase E1, beta polypeptide protein-coding 13-PTNLD9-TUMOR_peak_45298 chr6 52664214 52664350 + 9.89703 NA intron (NM_145740, intron 1 of 6) intron (NM_145740, intron 1 of 6) 4382 NM_145740 2938 Hs.446309 NM_145740 GSTA1 GST2|GSTA1-1|GTH1 glutathione S-transferase alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_33853 chr3 13689760 13689995 + 9.89703 NA Intergenic Intergenic -2344 NR_027103 285375 Hs.319969 NR_027103 ENSG00000224514 LINC00620 - long intergenic non-protein coding RNA 620 ncRNA 13-PTNLD9-TUMOR_peak_14997 chr13 99399396 99399555 + 9.89703 NA intron (NM_005073, intron 1 of 22) intron (NM_005073, intron 1 of 22) 5454 NM_005073 6564 Hs.436893 NM_005073 HPRD:02768 SLC15A1 HPECT1|HPEPT1|PEPT1 solute carrier family 15 (oligopeptide transporter), member 1 protein-coding 13-PTNLD9-TUMOR_peak_43565 chr6 3933459 3933719 + 9.89703 NA Intergenic Intergenic 83957 NM_012135 26240 Hs.140944 NM_012135 HPRD:16883 FAM50B D6S2654E|X5L family with sequence similarity 50, member B protein-coding 13-PTNLD9-TUMOR_peak_35257 chr3 107516600 107516707 + 9.89703 NA intron (NM_001276286, intron 14 of 16) intron (NM_001276286, intron 14 of 16) 80262 NR_024276 151658 Hs.159043 NR_015414 ENSG00000241469 LINC00635 - long intergenic non-protein coding RNA 635 ncRNA 13-PTNLD9-TUMOR_peak_30768 chr20 31045331 31045458 + 9.89703 NA intron (NM_001256798, intron 5 of 10) intron (NM_001256798, intron 5 of 10) 25991 NM_080616 140688 Hs.516978 NM_080616 HPRD:10728 NOL4L C20orf112|C20orf113|dJ1184F4.2|dJ1184F4.4 nucleolar protein 4-like protein-coding 13-PTNLD9-TUMOR_peak_49612 chr7 150010038 150010174 + 9.89703 NA intron (NM_001164458, intron 1 of 7) LTR7C|LTR|ERV1 -10037 NM_001164459 653857 Hs.664579 NM_001164458 ENSG00000106526 ACTR3C ARP11 ARP3 actin-related protein 3 homolog C (yeast) protein-coding 13-PTNLD9-TUMOR_peak_12105 chr12 9892458 9892623 + 9.89703 NA Intergenic LTR12C|LTR|ERV1 -6645 NM_001253750 160365 Hs.560087 NM_172004 HPRD:16247 CLECL1 DCAL-1|DCAL1 C-type lectin-like 1 protein-coding 13-PTNLD9-TUMOR_peak_47206 chr7 33032479 33032607 + 9.89703 NA intron (NM_007270, intron 6 of 9) intron (NM_007270, intron 6 of 9) 13457 NM_001284343 11328 Hs.103934 NM_007270 HPRD:06510 FKBP9 FKBP60|FKBP63|PPIase FK506 binding protein 9, 63 kDa protein-coding 13-PTNLD9-TUMOR_peak_14699 chr13 45491949 45492449 + 9.89703 NA Intergenic Intergenic 71414 NM_012345 26747 Hs.525006 NM_012345 HPRD:05073 NUFIP1 NUFIP|bA540M5.1 nuclear fragile X mental retardation protein interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_6211 chr1 249115420 249115692 + 9.89703 NA intron (NM_030645, intron 2 of 6) intron (NM_030645, intron 2 of 6) 4598 NM_030645 80851 Hs.298573 NM_030645 HPRD:13887 SH3BP5L - SH3-binding domain protein 5-like protein-coding 13-PTNLD9-TUMOR_peak_5708 chr1 228463652 228463835 + 9.89703 NA intron (NM_001271223, intron 25 of 115) CpG-2300 -62378 NR_073154 574407 Hs.650039 NM_001025495 ENSG00000162913 C1orf145 - chromosome 1 open reading frame 145 ncRNA 13-PTNLD9-TUMOR_peak_22437 chr18 2144128 2144405 + 9.89703 NA Intergenic MLT1H1|LTR|ERVL-MaLR 427223 NM_022840 64863 Hs.126888 NM_022840 HPRD:14390 METTL4 HsT661 methyltransferase like 4 protein-coding 13-PTNLD9-TUMOR_peak_35782 chr3 127455236 127455373 + 9.89703 NA intron (NM_001003794, intron 3 of 7) intron (NM_001003794, intron 3 of 7) 63523 NR_033429 80325 Hs.107812 NM_032548 HPRD:10513 ABTB1 BPOZ|BTB3|BTBD21|EF1ABP ankyrin repeat and BTB (POZ) domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_28823 chr2 158103364 158103533 + 9.89703 NA Intergenic Intergenic -10892 NM_014568 11227 Hs.269027 NM_014568 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 13-PTNLD9-TUMOR_peak_48555 chr7 100514469 100514570 + 9.89703 NA Intergenic AluY|SINE|Alu -20927 NM_001282449 43 Hs.154495 NM_000665 HPRD:00010 ACHE ACEE|ARACHE|N-ACHE|YT acetylcholinesterase (Yt blood group) protein-coding 13-PTNLD9-TUMOR_peak_14527 chr13 30916396 30916605 + 9.89703 NA intron (NR_024464, intron 4 of 4) MIRb|SINE|MIR 31551 NR_024464 100188949 Hs.439791 NR_024464 ENSG00000238121 LINC00426 - long intergenic non-protein coding RNA 426 ncRNA 13-PTNLD9-TUMOR_peak_52310 chr8 141319847 141320006 + 9.89703 NA intron (NM_031466, intron 10 of 22) intron (NM_031466, intron 10 of 22) 147935 NM_001160372 83696 Hs.654911 NM_031466 HPRD:18136 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|TRS120 trafficking protein particle complex 9 protein-coding 13-PTNLD9-TUMOR_peak_42239 chr5 138004781 138004943 + 9.89703 NA Intergenic Intergenic -84223 NM_001290309 1495 Hs.445981 NM_001903 HPRD:00285 CTNNA1 CAP102 catenin (cadherin-associated protein), alpha 1, 102kDa protein-coding 13-PTNLD9-TUMOR_peak_1375 chr1 41980808 41981054 + 9.89592 NA intron (NM_001127714, intron 6 of 7) intron (NM_001127714, intron 6 of 7) -30587 NM_001956 1907 Hs.1407 NM_001956 HPRD:07173 EDN2 ET2|PPET2 endothelin 2 protein-coding 13-PTNLD9-TUMOR_peak_28253 chr2 120981264 120981442 + 9.89592 NA promoter-TSS (NM_024121) promoter-TSS (NM_024121) -369 NM_024121 79134 Hs.376722 NM_024121 TMEM185B FAM11B transmembrane protein 185B protein-coding 13-PTNLD9-TUMOR_peak_32552 chr21 46289903 46290002 + 9.89383 NA intron (NR_104597, intron 1 of 4) intron (NR_104597, intron 1 of 4) 3866 NM_004339 754 Hs.474010 NM_004339 HPRD:04807 PTTG1IP C21orf1|C21orf3|PBF pituitary tumor-transforming 1 interacting protein protein-coding 13-PTNLD9-TUMOR_peak_35940 chr3 131941913 131942024 + 9.89383 NA Intergenic LTR16C|LTR|ERVL -94243 NM_001099 55 Hs.433060 NM_001099 HPRD:01378 ACPP 5'-NT|ACP-3|ACP3 acid phosphatase, prostate protein-coding 13-PTNLD9-TUMOR_peak_24348 chr19 17907484 17907632 + 9.89131 NA intron (NM_014256, intron 1 of 2) intron (NM_014256, intron 1 of 2) 1639 NM_014256 10331 Hs.69009 NM_014256 HPRD:10431 B3GNT3 B3GAL-T8|B3GN-T3|B3GNT-3|HP10328|TMEM3|beta3Gn-T3 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3 protein-coding 13-PTNLD9-TUMOR_peak_8226 chr10 104405829 104406431 + 9.89008 NA intron (NM_030912, intron 1 of 5) intron (NM_030912, intron 1 of 5) 1878 NM_030912 81603 Hs.336810 NM_030912 HPRD:06934 TRIM8 GERP|RNF27 tripartite motif containing 8 protein-coding 13-PTNLD9-TUMOR_peak_42841 chr5 159340041 159340317 + 9.89008 NA Intergenic Intergenic -3561 NM_000679 147 Hs.368632 NM_000679 ADRA1B ADRA1|ALPHA1BAR adrenoceptor alpha 1B protein-coding 13-PTNLD9-TUMOR_peak_25693 chr19 55983938 55984048 + 9.87881 NA Intergenic Intergenic -3706 NM_033113 89887 Hs.525209 NM_033113 HPRD:18317 ZNF628 ZEC|Zfp628 zinc finger protein 628 protein-coding 13-PTNLD9-TUMOR_peak_3220 chr1 144047749 144047958 + 9.87881 NA Intergenic Intergenic -98958 NM_001278267 100288142 Hs.445080 NM_001278267 ENSG00000203832 NBPF20 - neuroblastoma breakpoint family, member 20 protein-coding 13-PTNLD9-TUMOR_peak_31460 chr20 49345661 49345880 + 9.87832 NA Intergenic Intergenic -2311 NM_032521 84612 Hs.589848 NM_032521 HPRD:18703 PARD6B PAR6B par-6 family cell polarity regulator beta protein-coding 13-PTNLD9-TUMOR_peak_52493 chr8 145151045 145151161 + 9.87522 NA exon (NM_001916, exon 3 of 7) exon (NM_001916, exon 3 of 7) 1165 NM_001916 1537 Hs.289271 NM_001916 HPRD:00480 CYC1 MC3DN6|UQCR4 cytochrome c-1 protein-coding 13-PTNLD9-TUMOR_peak_13293 chr12 70133076 70133502 + 9.87522 NA promoter-TSS (NR_110072) promoter-TSS (NR_110072) 119 NR_103520 117177 Hs.258209 NM_022456 HPRD:10565 RAB3IP RABIN3 RAB3A interacting protein protein-coding 13-PTNLD9-TUMOR_peak_37639 chr4 2937848 2938079 + 9.87522 NA non-coding (NR_015453, exon 1 of 4) non-coding (NR_015453, exon 1 of 4) 685 NR_015453 317648 Hs.398178 NR_015453 ENSG00000249673 NOP14-AS1 C4orf10|RES4-24 NOP14 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_12253 chr12 16503692 16503833 + 9.87455 NA intron (NM_145791, intron 1 of 3) intron (NM_145791, intron 1 of 3) -2589 NM_145764 4257 Hs.389700 NM_020300 HPRD:00705 MGST1 GST12|MGST|MGST-I microsomal glutathione S-transferase 1 protein-coding 13-PTNLD9-TUMOR_peak_36547 chr3 158352419 158352633 + 9.87455 NA Intergenic L1PA2|LINE|L1 -9791 NM_024996 85476 Hs.518355 NM_024996 HPRD:07365 GFM1 COXPD1|EFG|EFG1|EFGM|EGF1|GFM|hEFG1 G elongation factor, mitochondrial 1 protein-coding 13-PTNLD9-TUMOR_peak_6551 chr10 15033194 15033588 + 9.87455 NA Intergenic HERVE-int|LTR|ERV1 31953 NM_001080836 644890 Hs.257249 NM_001080836 ENSG00000197889 MEIG1 SPATA39|bA2K17.3 meiosis/spermiogenesis associated 1 protein-coding 13-PTNLD9-TUMOR_peak_12757 chr12 50931391 50931594 + 9.87455 NA intron (NM_173602, intron 1 of 37) intron (NM_173602, intron 1 of 37) 32724 NM_173602 57609 Hs.505516 NM_020849 HPRD:08751 DIP2B - DIP2 disco-interacting protein 2 homolog B (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_36660 chr3 169293234 169293402 + 9.87455 NA intron (NM_004991, intron 1 of 16) intron (NM_004991, intron 1 of 16) 88245 NM_001205194 2122 Hs.744090 NM_004991 HPRD:01310 MECOM AML1-EVI-1|EVI1|MDS1|MDS1-EVI1|PRDM3 MDS1 and EVI1 complex locus protein-coding 13-PTNLD9-TUMOR_peak_26006 chr2 7985519 7985709 + 9.87455 NA Intergenic Intergenic 54172 NR_110256 101929551 Hs.116006 NR_110256 LOC101929551 - uncharacterized LOC101929551 ncRNA 13-PTNLD9-TUMOR_peak_7367 chr10 52085269 52085424 + 9.87455 NA intron (NM_147156, intron 8 of 10) intron (NM_147156, intron 8 of 10) -76976 NM_001143974 56624 Hs.512645 NM_019893 ENSG00000188611 ASAH2 BCDase|HNAC1|LCDase|N-CDase|NCDase N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2 protein-coding 13-PTNLD9-TUMOR_peak_13247 chr12 68304330 68304641 + 9.87455 NA Intergenic Intergenic -18530 NR_120456 101927922 Hs.450769 NR_120456 LINC01479 - long intergenic non-protein coding RNA 1479 ncRNA 13-PTNLD9-TUMOR_peak_24226 chr19 15391896 15392029 + 9.87455 NA promoter-TSS (NM_058243) promoter-TSS (NM_058243) -700 NM_058243 23476 Hs.187763 NM_014299 HPRD:10574 BRD4 CAP|HUNK1|HUNKI|MCAP bromodomain containing 4 protein-coding 13-PTNLD9-TUMOR_peak_15220 chr14 20094447 20094568 + 9.87254 NA Intergenic MLT1M|LTR|ERVL-MaLR -74235 NM_001145442 641455 Hs.654289 NM_001145442 ENSG00000187537 POTEM ACT|P704P|POTE14beta POTE ankyrin domain family, member M protein-coding 13-PTNLD9-TUMOR_peak_11946 chr12 6276506 6276777 + 9.86596 NA Intergenic MER58C|DNA|hAT-Charlie -32841 NM_001769 928 Hs.114286 NM_001769 HPRD:00880 CD9 BTCC-1|DRAP-27|MIC3|MRP-1|TSPAN-29|TSPAN29 CD9 molecule protein-coding 13-PTNLD9-TUMOR_peak_36089 chr3 138070093 138070263 + 9.86402 NA intron (NM_001252090, intron 1 of 5) intron (NM_001252090, intron 1 of 5) 2208 NM_001252090 22808 Hs.527021 NM_012219 HPRD:06662 MRAS M-RAs|R-RAS3|RRAS3 muscle RAS oncogene homolog protein-coding 13-PTNLD9-TUMOR_peak_5263 chr1 206510469 206510687 + 9.86402 NA Intergenic Intergenic -5622 NM_001271870 647135 Hs.497575 NM_001271870 SRGAP2B SRGAP2L|SRGAP2P2 SLIT-ROBO Rho GTPase activating protein 2B protein-coding 13-PTNLD9-TUMOR_peak_2336 chr1 85991335 85991524 + 9.86402 NA intron (NM_001134445, intron 1 of 6) intron (NM_001134445, intron 1 of 6) 52617 NM_001134445 23576 Hs.713411 NM_012137 HPRD:09203 DDAH1 DDAH|HEL-S-16 dimethylarginine dimethylaminohydrolase 1 protein-coding 13-PTNLD9-TUMOR_peak_20167 chr16 90061312 90062028 + 9.86381 NA non-coding (NR_003226, exon 11 of 11) non-coding (NR_003226, exon 11 of 11) 14859 NM_024043 79007 Hs.301394 NM_024043 HPRD:08327 DBNDD1 - dysbindin (dystrobrevin binding protein 1) domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_34015 chr3 19144265 19144645 + 9.86286 NA Intergenic L1PA2|LINE|L1 -45562 NM_144633 131096 Hs.475656 NM_144633 HPRD:10006 KCNH8 ELK|ELK1|Kv12.1|elk3 potassium voltage-gated channel, subfamily H (eag-related), member 8 protein-coding 13-PTNLD9-TUMOR_peak_39811 chr4 166034780 166034954 + 9.86286 NA promoter-TSS (NM_001100389) promoter-TSS (NM_001100389) -843 NM_001100389 201931 Hs.704511 NM_152681 TMEM192 - transmembrane protein 192 protein-coding 13-PTNLD9-TUMOR_peak_33738 chr3 10447290 10447436 + 9.86286 NA intron (NM_001001331, intron 3 of 22) intron (NM_001001331, intron 3 of 22) -11117 NR_030614 100126334 NR_030614 MIR885 MIRN885|hsa-mir-885 microRNA 885 ncRNA 13-PTNLD9-TUMOR_peak_52301 chr8 141109079 141109453 + 9.86286 NA intron (NM_031466, intron 17 of 22) CpG 358595 NM_001160372 83696 Hs.654911 NM_031466 HPRD:18136 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|TRS120 trafficking protein particle complex 9 protein-coding 13-PTNLD9-TUMOR_peak_29350 chr2 191269384 191269532 + 9.86286 NA Intergenic L2|LINE|L2 -3623 NM_017694 54842 Hs.418581 NM_017694 HPRD:13369 MFSD6 MMR2|hMMR2 major facilitator superfamily domain containing 6 protein-coding 13-PTNLD9-TUMOR_peak_1607 chr1 46505227 46505579 + 9.86286 NA TTS (NM_001114172) TTS (NM_001114172) 92977 NM_003629 8503 Hs.655387 NM_003629 HPRD:05831 PIK3R3 p55|p55-GAMMA phosphoinositide-3-kinase, regulatory subunit 3 (gamma) protein-coding 13-PTNLD9-TUMOR_peak_38064 chr4 19691268 19691477 + 9.85454 NA Intergenic Intergenic -563815 NM_001289135 9353 Hs.29802 NM_004787 HPRD:04776 SLIT2 SLIL3|Slit-2 slit homolog 2 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_52814 chr9 16522007 16522382 + 9.85454 NA intron (NM_017637, intron 5 of 6) intron (NM_017637, intron 5 of 6) -245883 NR_073471 100129385 Hs.586441 NM_001271829 ENSG00000205549 C9orf92 Em:AL513424.1 chromosome 9 open reading frame 92 protein-coding 13-PTNLD9-TUMOR_peak_54313 chr9 108320349 108320662 + 9.85454 NA promoter-TSS (NM_001079802) promoter-TSS (NM_001079802) 94 NM_001198963 2218 Hs.55777 NM_006731 HPRD:06308 FKTN CMD1X|FCMD|LGMD2M|MDDGA4|MDDGB4|MDDGC4 fukutin protein-coding 13-PTNLD9-TUMOR_peak_16101 chr14 68925695 68925934 + 9.85454 NA intron (NM_133510, intron 9 of 10) intron (NM_133510, intron 9 of 10) 334817 NM_004926 677 Hs.85155 NM_004926 HPRD:03041 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein-like 1 protein-coding 13-PTNLD9-TUMOR_peak_53755 chr9 83797478 83797646 + 9.85454 NA Intergenic Intergenic 506034 NM_005077 7088 Hs.197320 NM_005077 HPRD:02557 TLE1 ESG|ESG1|GRG1 transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_32298 chr21 39031375 39031651 + 9.85454 NA intron (NM_002240, intron 3 of 3) intron (NM_002240, intron 3 of 3) 238911 NM_001396 1859 Hs.368240 NM_001396 HPRD:09018 DYRK1A DYRK|DYRK1|HP86|MNB|MNBH|MRD7 dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A protein-coding 13-PTNLD9-TUMOR_peak_11042 chr11 101737470 101737664 + 9.85454 NA Intergenic Intergenic -48179 NM_020802 57562 Hs.156352 NM_020802 HPRD:17212 KIAA1377 - KIAA1377 protein-coding 13-PTNLD9-TUMOR_peak_21773 chr17 62696969 62697281 + 9.85454 NA Intergenic AluY|SINE|Alu -38739 NM_022739 64750 Hs.515011 NM_022739 SMURF2 - SMAD specific E3 ubiquitin protein ligase 2 protein-coding 13-PTNLD9-TUMOR_peak_11815 chr12 2325490 2325604 + 9.85454 NA intron (NM_001129832, intron 3 of 47) intron (NM_001129832, intron 3 of 47) 7100 NR_046578 100874234 Hs.372570 NR_046578 ENSG00000256025 CACNA1C-AS4 - CACNA1C antisense RNA 4 ncRNA 13-PTNLD9-TUMOR_peak_52161 chr8 134230146 134230320 + 9.85454 NA intron (NM_001204869, intron 2 of 2) intron (NM_001204869, intron 2 of 2) 26951 NM_001204869 8840 Hs.492974 NM_003882 WISP1 CCN4|WISP1c|WISP1i|WISP1tc WNT1 inducible signaling pathway protein 1 protein-coding 13-PTNLD9-TUMOR_peak_18518 chr16 11422485 11422635 + 9.85454 NA Intergenic Intergenic -16751 NM_152308 116028 Hs.347524 NM_152308 HPRD:14497 RMI2 BLAP18|C16orf75 RecQ mediated genome instability 2 protein-coding 13-PTNLD9-TUMOR_peak_37338 chr3 194432737 194432920 + 9.85079 NA intron (NR_037891, intron 1 of 3) intron (NR_037891, intron 1 of 3) 3678 NR_037891 100507391 Hs.590099 NR_037891 ENSG00000237222 LOC100507391 - uncharacterized LOC100507391 ncRNA 13-PTNLD9-TUMOR_peak_40482 chr5 21685755 21685911 + 9.85079 NA Intergenic MER21B|LTR|ERVL 226244 NR_027027 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - glucuronidase, beta pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_56722 chrX 153755410 153755567 + 9.85079 NA Intergenic MIRc|SINE|MIR -10922 NM_001171133 60343 Hs.289108 NM_021806 HPRD:06505 FAM3A 2.19|DLD|DXS560S|XAP-7 family with sequence similarity 3, member A protein-coding 13-PTNLD9-TUMOR_peak_15346 chr14 24058260 24058497 + 9.85079 NA Intergenic Intergenic -10369 NM_032452 84502 Hs.597841 NM_032452 HPRD:17170 JPH4 JP4|JPHL1 junctophilin 4 protein-coding 13-PTNLD9-TUMOR_peak_51156 chr8 74371880 74372247 + 9.85079 NA intron (NM_001164381, intron 12 of 13) intron (NM_001164381, intron 12 of 13) 39754 NR_038406 100128126 Hs.679921 NR_038406 ENSG00000253302 STAU2-AS1 - STAU2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_4661 chr1 182170750 182170935 + 9.85079 NA Intergenic Intergenic 112354 NR_104175 400799 Hs.634884 NR_104175 ENSG00000228918 LINC01344 GS1-122H1.2 long intergenic non-protein coding RNA 1344 ncRNA 13-PTNLD9-TUMOR_peak_37826 chr4 7268268 7268449 + 9.85079 NA intron (NM_020777, intron 1 of 26) intron (NM_020777, intron 1 of 26) -43819 NR_039961 100616471 NR_039961 MIR4798 - microRNA 4798 ncRNA 13-PTNLD9-TUMOR_peak_15445 chr14 31503139 31503371 + 9.85079 NA intron (NM_001254728, intron 1 of 5) intron (NM_001254728, intron 1 of 5) 7406 NM_001254728 11154 Hs.293411 NM_007077 HPRD:06257 AP4S1 AP47B|CLA20|CLAPS4|CPSQ6|SPG52 adaptor-related protein complex 4, sigma 1 subunit protein-coding 13-PTNLD9-TUMOR_peak_42313 chr5 139639238 139639361 + 9.85079 NA intron (NM_002622, intron 3 of 3) intron (NM_002622, intron 3 of 3) 43390 NM_002622 5201 Hs.483564 NM_002622 HPRD:05357 PFDN1 PDF|PFD1 prefoldin subunit 1 protein-coding 13-PTNLD9-TUMOR_peak_41444 chr5 82015350 82015477 + 9.85079 NA Intergenic MIRc|SINE|MIR -120561 NR_039773 100616297 NR_039773 MIR3977 - microRNA 3977 ncRNA 13-PTNLD9-TUMOR_peak_10706 chr11 77122922 77123155 + 9.85079 NA intron (NM_002576, intron 1 of 14) CpG 62070 NM_002576 5058 Hs.435714 NM_002576 HPRD:03995 PAK1 PAKalpha p21 protein (Cdc42/Rac)-activated kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_30235 chr20 277891 278179 + 9.85079 NA promoter-TSS (NM_033089) promoter-TSS (NM_033089) -169 NM_033089 85364 Hs.28608 NM_033089 HPRD:15701 ZCCHC3 C20orf99 zinc finger, CCHC domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_23257 chr18 55021284 55021437 + 9.85079 NA intron (NM_015879, intron 1 of 3) CpG 1639 NM_015879 51046 Hs.23172 NM_015879 HPRD:15343 ST8SIA3 SIAT8C|ST8SiaIII ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3 protein-coding 13-PTNLD9-TUMOR_peak_54625 chr9 122828668 122828854 + 9.85079 NA Intergenic Intergenic 178567 NR_029604 406939 NR_029604 miRBase:MI0000262 MIR147A MIR147|MIRN147|hsa-mir-147a microRNA 147a ncRNA 13-PTNLD9-TUMOR_peak_36602 chr3 160787800 160787923 + 9.85079 NA 3' UTR (NM_139245, exon 4 of 4) 3' UTR (NM_139245, exon 4 of 4) 34822 NM_033169 8706 Hs.418062 NM_003781 HPRD:09119 B3GALNT1 B3GALT3|GLCT3|GLOB|Gb4Cer|P|P1|beta3Gal-T3|galT3 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) protein-coding 13-PTNLD9-TUMOR_peak_33025 chr22 27509126 27509409 + 9.85079 NA Intergenic Intergenic 210012 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000223704 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 13-PTNLD9-TUMOR_peak_20244 chr17 2239706 2239854 + 9.85079 NA 5' UTR (NM_018128, exon 1 of 15) 5' UTR (NM_018128, exon 1 of 15) 898 NM_018128 55720 Hs.388170 NM_018128 HPRD:07681 TSR1 - TSR1, 20S rRNA accumulation, homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_55785 chrX 47038762 47039073 + 9.85079 NA intron (NM_005676, intron 9 of 23) intron (NM_005676, intron 9 of 23) -11282 NM_153280 7317 Hs.533273 NM_003334 HPRD:02440 UBA1 A1S9|A1S9T|A1ST|AMCX1|CFAP124|GXP1|POC20|SMAX2|UBA1A|UBE1|UBE1X ubiquitin-like modifier activating enzyme 1 protein-coding 13-PTNLD9-TUMOR_peak_8976 chr11 8740933 8741110 + 9.84605 NA intron (NM_139157, intron 3 of 18) intron (NM_139157, intron 3 of 18) 34035 NR_002977 677826 Hs.745552 NR_002977 SNORA45B ACA3-2|SNORA45 small nucleolar RNA, H/ACA box 45B snoRNA 13-PTNLD9-TUMOR_peak_5535 chr1 223915245 223915522 + 9.84605 NA intron (NM_001748, intron 2 of 20) intron (NM_001748, intron 2 of 20) 15264 NM_001748 824 Hs.350899 NM_001748 HPRD:00254 CAPN2 CANP2|CANPL2|CANPml|mCANP calpain 2, (m/II) large subunit protein-coding 13-PTNLD9-TUMOR_peak_14092 chr12 121974185 121974344 + 9.84605 NA intron (NM_001005366, intron 6 of 22) intron (NM_001005366, intron 6 of 22) 44100 NM_001005366 84678 Hs.524800 NM_032590 HPRD:12362 KDM2B CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2 lysine (K)-specific demethylase 2B protein-coding 13-PTNLD9-TUMOR_peak_15514 chr14 34550429 34550562 + 9.84605 NA Intergenic Intergenic -130211 NM_022073 112399 Hs.135507 NM_022073 HPRD:06972 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia-inducible factor 3 protein-coding 13-PTNLD9-TUMOR_peak_5013 chr1 202081731 202081943 + 9.84528 NA Intergenic MIRc|SINE|MIR -10192 NM_004767 9283 Hs.132049 NM_004767 GPR37L1 ET(B)R-LP-2|ETBR-LP-2 G protein-coupled receptor 37 like 1 protein-coding 13-PTNLD9-TUMOR_peak_10401 chr11 67980158 67980389 + 9.83991 NA intron (NM_001300909, intron 1 of 8) CpG 511 NM_016028 51111 Hs.632120 NM_016028 HPRD:11616 SUV420H1 CGI85|KMT5B suppressor of variegation 4-20 homolog 1 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_42277 chr5 139047744 139047945 + 9.83991 NA intron (NM_016463, intron 1 of 2) intron (NM_016463, intron 1 of 2) 19543 NM_016463 51523 Hs.744933 NM_016463 HPRD:13105 CXXC5 CF5|RINF|WID CXXC finger protein 5 protein-coding 13-PTNLD9-TUMOR_peak_8157 chr10 101599945 101600121 + 9.83991 NA intron (NM_000392, intron 25 of 31) CpG 57678 NM_000392 1244 Hs.368243 NM_000392 HPRD:03065 ABCC2 ABC30|CMOAT|DJS|MRP2|cMRP ATP-binding cassette, sub-family C (CFTR/MRP), member 2 protein-coding 13-PTNLD9-TUMOR_peak_2244 chr1 78443918 78444064 + 9.83891 NA intron (NM_003902, intron 1 of 19) intron (NM_003902, intron 1 of 19) 786 NM_003902 8880 Hs.567380 NM_003902 HPRD:10349 FUBP1 FBP|FUBP far upstream element (FUSE) binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_12869 chr12 53339362 53339642 + 9.83891 NA intron (NM_001256293, intron 1 of 8) intron (NM_001256293, intron 1 of 8) -3153 NM_199187 3875 Hs.406013 NM_000224 HPRD:01020 KRT18 CYK18|K18 keratin 18 protein-coding 13-PTNLD9-TUMOR_peak_33894 chr3 14476998 14477194 + 9.83891 NA intron (NM_001134367, intron 10 of 22) intron (NM_001134367, intron 10 of 22) 33020 NM_001134368 6533 Hs.529488 NM_003043 HPRD:01734 SLC6A6 TAUT solute carrier family 6 (neurotransmitter transporter), member 6 protein-coding 13-PTNLD9-TUMOR_peak_14347 chr12 132861523 132861712 + 9.83306 NA intron (NM_001122636, intron 2 of 10) intron (NM_001122636, intron 2 of 10) 9640 NR_024563 100130238 Hs.536338 NR_024563 LOC100130238 - uncharacterized LOC100130238 ncRNA 13-PTNLD9-TUMOR_peak_32400 chr21 43127805 43127966 + 9.83306 NA Intergenic HAL1|LINE|L1 8050 NR_027272 150135 Hs.350679 NM_152506 HPRD:10741 LINC00479 C21orf129 long intergenic non-protein coding RNA 479 ncRNA 13-PTNLD9-TUMOR_peak_34933 chr3 71032042 71032323 + 9.83306 NA intron (NM_001244810, intron 14 of 20) intron (NM_001244810, intron 14 of 20) 81892 NM_001244813 27086 Hs.59368 NM_032682 HPRD:18518 FOXP1 12CC4|QRF1|hFKH1B forkhead box P1 protein-coding 13-PTNLD9-TUMOR_peak_8114 chr10 99334484 99334723 + 9.83306 NA intron (NM_001291219, intron 1 of 7) intron (NM_001291219, intron 1 of 7) 2405 NM_020349 26287 Hs.73708 NM_020349 HPRD:12460 ANKRD2 ARPP ankyrin repeat domain 2 (stretch responsive muscle) protein-coding 13-PTNLD9-TUMOR_peak_39658 chr4 153200267 153200447 + 9.83306 NA Intergenic Intergenic -58450 NR_104273 102191832 Hs.712524 NR_104273 ENSG00000270751 DEAR DEspR dual endothelin-1(VEGFsp)/angiotensin II receptor pseudogene pseudo 13-PTNLD9-TUMOR_peak_24777 chr19 36184787 36184938 + 9.83306 NA Intergenic LTR41|LTR|ERVL -18968 NM_014383 27033 Hs.99430 NM_014383 HPRD:12055 ZBTB32 FAXF|FAZF|Rog|TZFP|ZNF538 zinc finger and BTB domain containing 32 protein-coding 13-PTNLD9-TUMOR_peak_35537 chr3 121638076 121638280 + 9.83306 NA intron (NM_021082, intron 7 of 21) LTR27B|LTR|ERV1 25007 NM_021082 6565 Hs.518089 NM_021082 HPRD:09088 SLC15A2 PEPT2 solute carrier family 15 (oligopeptide transporter), member 2 protein-coding 13-PTNLD9-TUMOR_peak_41758 chr5 112395042 112395465 + 9.83306 NA intron (NM_002387, intron 12 of 16) intron (NM_002387, intron 12 of 16) 82846 NM_001242377 167227 Hs.443875 NM_152624 HPRD:13125 DCP2 NUDT20 decapping mRNA 2 protein-coding 13-PTNLD9-TUMOR_peak_54773 chr9 128023872 128024119 + 9.83306 NA promoter-TSS (NM_001282680) promoter-TSS (NM_001282680) -78 NM_001282679 26130 Hs.495134 NM_015635 HPRD:10886 GAPVD1 GAPEX5|GAPex-5|RAP6 GTPase activating protein and VPS9 domains 1 protein-coding 13-PTNLD9-TUMOR_peak_47812 chr7 70064891 70065087 + 9.83306 NA intron (NM_001127231, intron 5 of 17) MER5A|DNA|hAT-Charlie -532534 NM_022479 64409 Hs.488591 NM_022479 HPRD:15655 WBSCR17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T5L Williams-Beuren syndrome chromosome region 17 protein-coding 13-PTNLD9-TUMOR_peak_48067 chr7 76221215 76221474 + 9.83306 NA intron (NR_029411, intron 2 of 2) L1PA15|LINE|L1 35276 NM_152992 22932 Hs.488877 NM_012230 HPRD:15974 POMZP3 POM-ZP3|POM121 POM121 and ZP3 fusion protein-coding 13-PTNLD9-TUMOR_peak_39540 chr4 146019898 146020092 + 9.83306 NA promoter-TSS (NM_001256708) promoter-TSS (NM_001256708) -302 NM_001256708 10393 Hs.480876 NM_014885 ANAPC10 APC10|DOC1 anaphase promoting complex subunit 10 protein-coding 13-PTNLD9-TUMOR_peak_17694 chr15 75986818 75987028 + 9.83306 NA intron (NM_001897, intron 1 of 9) intron (NM_001897, intron 1 of 9) 18266 NM_001897 1464 Hs.513044 NM_001897 HPRD:03105 CSPG4 HMW-MAA|MCSP|MCSPG|MEL-CSPG|MSK16|NG2 chondroitin sulfate proteoglycan 4 protein-coding 13-PTNLD9-TUMOR_peak_15517 chr14 34554295 34554428 + 9.83257 NA Intergenic AluSz|SINE|Alu -134077 NM_022073 112399 Hs.135507 NM_022073 HPRD:06972 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia-inducible factor 3 protein-coding 13-PTNLD9-TUMOR_peak_26346 chr2 26102042 26102198 + 9.83257 NA promoter-TSS (NM_018263) promoter-TSS (NM_018263) -808 NM_018263 55252 Hs.119815 NM_018263 HPRD:10676 ASXL2 ASXH2 additional sex combs like transcriptional regulator 2 protein-coding 13-PTNLD9-TUMOR_peak_45905 chr6 111804891 111805154 + 9.82874 NA promoter-TSS (NM_002912) promoter-TSS (NM_002912) -104 NM_002912 5980 Hs.232021 NM_002912 HPRD:04145 REV3L POLZ|REV3 REV3-like, polymerase (DNA directed), zeta, catalytic subunit protein-coding 13-PTNLD9-TUMOR_peak_4920 chr1 200992779 200992948 + 9.82874 NA promoter-TSS (NM_001252103) promoter-TSS (NM_001252103) -35 NM_001252102 23046 Hs.169182 NM_017596 ENSG00000116852 KIF21B - kinesin family member 21B protein-coding 13-PTNLD9-TUMOR_peak_7227 chr10 47009343 47009535 + 9.82874 NA Intergenic Intergenic 15893 NM_014696 9721 Hs.523375 NM_014696 GPRIN2 GRIN2|KIAA0514 G protein regulated inducer of neurite outgrowth 2 protein-coding 13-PTNLD9-TUMOR_peak_3405 chr1 147623409 147623547 + 9.82751 NA intron (NR_110864, intron 1 of 22) intron (NR_110864, intron 1 of 22) 991 NR_110864 200030 Hs.721588 NM_183372 HPRD:14123 NBPF11 NBPF24 neuroblastoma breakpoint family, member 11 protein-coding 13-PTNLD9-TUMOR_peak_23125 chr18 46148458 46148624 + 9.81671 NA intron (NM_014772, intron 2 of 11) L2a|LINE|L2 -48430 NR_039897 100616366 NR_039897 MIR4743 - microRNA 4743 ncRNA 13-PTNLD9-TUMOR_peak_19317 chr16 50730658 50730819 + 9.81671 NA promoter-TSS (NM_022162) promoter-TSS (NM_022162) -312 NM_022162 64127 Hs.592072 NM_022162 HPRD:05810 NOD2 ACUG|BLAU|CARD15|CD|CLR16.3|IBD1|NLRC2|NOD2B|PSORAS1 nucleotide-binding oligomerization domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_237 chr1 7531941 7532172 + 9.81671 NA intron (NM_015215, intron 6 of 22) intron (NM_015215, intron 6 of 22) -299273 NM_004781 9341 Hs.66708 NM_004781 HPRD:04711 VAMP3 CEB vesicle-associated membrane protein 3 protein-coding 13-PTNLD9-TUMOR_peak_50665 chr8 38794256 38794427 + 9.81299 NA intron (NM_021623, intron 3 of 12) intron (NM_021623, intron 3 of 12) 35588 NM_021623 59339 Hs.369123 NM_021623 ENSG00000169499 PLEKHA2 TAPP2 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 2 protein-coding 13-PTNLD9-TUMOR_peak_36552 chr3 158449830 158450397 + 9.81140 NA exon (NM_002888, exon 1 of 4) exon (NM_002888, exon 1 of 4) 162 NM_002888 5918 Hs.131269 NM_002888 HPRD:05477 RARRES1 LXNL|TIG1 retinoic acid receptor responder (tazarotene induced) 1 protein-coding 13-PTNLD9-TUMOR_peak_37735 chr4 5052298 5052410 + 9.80432 NA Intergenic Intergenic -1173 NM_018401 55351 Hs.133062 NM_018401 HPRD:15446 STK32B HSA250839|STK32|STKG6|YANK2 serine/threonine kinase 32B protein-coding 13-PTNLD9-TUMOR_peak_25474 chr19 51376368 51376560 + 9.80432 NA promoter-TSS (NM_005551) promoter-TSS (NM_005551) -225 NR_045762 3817 Hs.515560 NM_005551 HPRD:01006 KLK2 KLK2A2|hGK-1|hK2 kallikrein-related peptidase 2 protein-coding 13-PTNLD9-TUMOR_peak_26568 chr2 36631551 36631731 + 9.80432 NA intron (NM_016441, intron 2 of 16) intron (NM_016441, intron 2 of 16) 48271 NM_016441 51232 Hs.699247 NM_016441 HPRD:08392 CRIM1 CRIM-1|S52 cysteine rich transmembrane BMP regulator 1 (chordin-like) protein-coding 13-PTNLD9-TUMOR_peak_19492 chr16 58767735 58767892 + 9.80432 NA intron (NM_001286220, intron 1 of 8) CpG 448 NM_002080 2806 Hs.599470 NM_002080 HPRD:00684 GOT2 KAT4|KATIV|mitAAT glutamic-oxaloacetic transaminase 2, mitochondrial protein-coding 13-PTNLD9-TUMOR_peak_6965 chr10 38241002 38241578 + 9.80432 NA exon (NM_145011, exon 6 of 6) exon (NM_145011, exon 6 of 6) 24163 NM_145011 219749 Hs.499429 NM_145011 HPRD:01916 ZNF25 KOX19|Zfp9 zinc finger protein 25 protein-coding 13-PTNLD9-TUMOR_peak_52973 chr9 28782694 28782901 + 9.80432 NA intron (NM_001258282, intron 2 of 6) Tigger3a|DNA|TcMar-Tigger -63494 NM_152570 158038 Hs.662661 NM_152570 HPRD:08715 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_31227 chr20 44761381 44761501 + 9.80432 NA Intergenic Intergenic 14535 NM_152854 958 Hs.472860 NM_001250 HPRD:00178 CD40 Bp50|CDW40|TNFRSF5|p50 CD40 molecule, TNF receptor superfamily member 5 protein-coding 13-PTNLD9-TUMOR_peak_8593 chr10 128950707 128950912 + 9.80432 NA intron (NM_001039762, intron 5 of 5) intron (NM_001039762, intron 5 of 5) 43613 NM_001039762 642938 Hs.613882 NM_001039762 ENSG00000188916 FAM196A C10orf141 family with sequence similarity 196, member A protein-coding 13-PTNLD9-TUMOR_peak_46929 chr7 16524502 16524640 + 9.80432 NA Intergenic LTR16E2|LTR|ERVL -19097 NM_015464 25928 Hs.648106 NM_015464 HPRD:15417 SOSTDC1 ECTODIN|USAG1 sclerostin domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_6928 chr10 35090401 35090537 + 9.80432 NA intron (NM_001184791, intron 1 of 20) intron (NM_001184791, intron 1 of 20) 13784 NM_001184791 56288 Hs.131489 NM_019619 HPRD:05994 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 13-PTNLD9-TUMOR_peak_17722 chr15 78133436 78133674 + 9.80432 NA Intergenic MER5A1|DNA|hAT-Charlie -20313 NM_001301186 84894 Hs.656765 NM_032808 HPRD:14322 LINGO1 LERN1|LRRN6A|UNQ201 leucine rich repeat and Ig domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_14428 chr13 24081026 24081238 + 9.80432 NA Intergenic Tigger3b|DNA|TcMar-Tigger 37481 NR_038995 100506697 Hs.50118 NR_038995 ENSG00000232977 LINC00327 NCRNA00327 long intergenic non-protein coding RNA 327 ncRNA 13-PTNLD9-TUMOR_peak_37005 chr3 184506687 184506851 + 9.80432 NA Intergenic Intergenic -15826 NR_110043 101928992 Hs.507129 NR_110043 ENSG00000229433 LOC101928992 - uncharacterized LOC101928992 ncRNA 13-PTNLD9-TUMOR_peak_26490 chr2 30497576 30497805 + 9.80432 NA Intergenic Intergenic 43293 NM_030915 81606 Hs.567598 NM_030915 HPRD:13965 LBH - limb bud and heart development protein-coding 13-PTNLD9-TUMOR_peak_24748 chr19 35645939 35646167 + 9.80432 NA TTS (NM_022006) TTS (NM_022006) 208 NM_001164605 53827 Hs.333418 NM_014164 HPRD:09448 FXYD5 DYSAD|IWU1|KCT1|OIT2|PRO6241|RIC FXYD domain containing ion transport regulator 5 protein-coding 13-PTNLD9-TUMOR_peak_33366 chr22 42753690 42754060 + 9.80432 NA Intergenic Intergenic 11339 NR_120597 102723775 Hs.335413 NR_120595 LINC01315 lnc-C22orf32-1 long intergenic non-protein coding RNA 1315 ncRNA 13-PTNLD9-TUMOR_peak_22627 chr18 12255840 12256006 + 9.80432 NA intron (NR_036468, intron 1 of 4) intron (NR_036468, intron 1 of 4) 1563 NR_036468 1149 Hs.249129 NM_001279 CIDEA CIDE-A cell death-inducing DFFA-like effector a protein-coding 13-PTNLD9-TUMOR_peak_54421 chr9 112893425 112893553 + 9.80432 NA intron (NM_001136562, intron 1 of 3) intron (NM_001136562, intron 1 of 3) 5708 NM_001136562 11217 Hs.591908 NM_001004065 ENSG00000241978 AKAP2 AKAP-2|AKAPKL|PRKA2 A kinase (PRKA) anchor protein 2 protein-coding 13-PTNLD9-TUMOR_peak_12167 chr12 12808918 12809098 + 9.80432 NA Intergenic Intergenic 40113 NM_006143 2842 Hs.657862 NM_006143 HPRD:04236 GPR19 - G protein-coupled receptor 19 protein-coding 13-PTNLD9-TUMOR_peak_3391 chr1 147243449 147243564 + 9.80432 NA intron (NM_005266, intron 1 of 1) MIR3|SINE|MIR 1960 NM_005266 2702 Hs.447968 NM_005266 HPRD:08699 GJA5 ATFB11|CX40 gap junction protein, alpha 5, 40kDa protein-coding 13-PTNLD9-TUMOR_peak_46469 chr6 161790470 161790700 + 9.80432 NA intron (NM_004562, intron 10 of 11) intron (NM_004562, intron 10 of 11) -95478 NM_020133 56895 Hs.353175 NM_020133 HPRD:12437 AGPAT4 1-AGPAT4|LPAAT-delta|dJ473J16.2 1-acylglycerol-3-phosphate O-acyltransferase 4 protein-coding 13-PTNLD9-TUMOR_peak_18874 chr16 28376019 28376318 + 9.80432 NA Intergenic CpG -1987 NM_001282524 728741 Hs.726467 NM_001282524 ENSG00000198156 NPIPB6 NPIPB nuclear pore complex interacting protein family, member B6 protein-coding 13-PTNLD9-TUMOR_peak_9707 chr11 46951791 46951955 + 9.80432 NA Intergenic FLAM_C|SINE|Alu -6367 NM_001278222 79096 Hs.368296 NM_024113 HPRD:08332 C11orf49 - chromosome 11 open reading frame 49 protein-coding 13-PTNLD9-TUMOR_peak_49875 chr7 158488893 158489007 + 9.80432 NA intron (NM_001281933, intron 2 of 27) MLT1H1|LTR|ERVL-MaLR 8572 NR_104054 54892 Hs.18616 NM_017760 HPRD:10539 NCAPG2 CAP-G2|CAPG2|LUZP5|MTB|hCAP-G2 non-SMC condensin II complex, subunit G2 protein-coding 13-PTNLD9-TUMOR_peak_42063 chr5 132441644 132441744 + 9.80432 NA TTS (NM_002154) TTS (NM_002154) 54032 NM_002154 3308 Hs.90093 NM_002154 HSPA4 APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY heat shock 70kDa protein 4 protein-coding 13-PTNLD9-TUMOR_peak_22784 chr18 21299805 21300051 + 9.80270 NA intron (NM_198129, intron 2 of 74) L2a|LINE|L2 30366 NM_001127717 3909 Hs.436367 NM_000227 HPRD:02883 LAMA3 BM600|E170|LAMNA|LOCS|lama3a laminin, alpha 3 protein-coding 13-PTNLD9-TUMOR_peak_42599 chr5 149208102 149208330 + 9.80270 NA intron (NM_001172698, intron 3 of 10) L2a|LINE|L2 56713 NM_001172699 133522 Hs.483816 NM_133263 HPRD:10594 PPARGC1B ERRL1|PERC|PGC-1(beta)|PGC1B peroxisome proliferator-activated receptor gamma, coactivator 1 beta protein-coding 13-PTNLD9-TUMOR_peak_39806 chr4 165847599 165847737 + 9.80270 NA Intergenic MLT1C|LTR|ERVL-MaLR -30432 NM_153027 152756 Hs.178648 NM_153027 HPRD:08714 FAM218A C4orf39 family with sequence similarity 218, member A protein-coding 13-PTNLD9-TUMOR_peak_16815 chr15 24979587 24979764 + 9.80270 NA Intergenic MER54B|LTR|ERVL 59134 NM_018958 23742 Hs.649663 NM_018958 HPRD:08506 NPAP1 C15orf2 nuclear pore associated protein 1 protein-coding 13-PTNLD9-TUMOR_peak_26014 chr2 8594111 8594340 + 9.80270 NA Intergenic Intergenic -125676 NR_034135 339789 Hs.565619 NM_207358 HPRD:14171 LINC00299 C2orf46|NCRNA00299 long intergenic non-protein coding RNA 299 ncRNA 13-PTNLD9-TUMOR_peak_7904 chr10 85927119 85927271 + 9.80270 NA Intergenic LTR2B|LTR|ERV1 -6359 NM_207373 387695 Hs.298713 NM_207373 HPRD:12599 C10orf99 UNQ1833 chromosome 10 open reading frame 99 protein-coding 13-PTNLD9-TUMOR_peak_18341 chr16 4033133 4033323 + 9.80270 NA intron (NM_001116, intron 7 of 10) intron (NM_001116, intron 7 of 10) -32783 NR_120311 102724927 Hs.364739 NR_120311 LOC102724927 - uncharacterized LOC102724927 ncRNA 13-PTNLD9-TUMOR_peak_30618 chr20 23609881 23610040 + 9.80270 NA 3' UTR (NM_001288614, exon 4 of 4) 3' UTR (NM_001288614, exon 4 of 4) 8725 NM_000099 1471 Hs.304682 NM_000099 HPRD:05056 CST3 ARMD11 cystatin C protein-coding 13-PTNLD9-TUMOR_peak_12249 chr12 16064118 16064501 + 9.80270 NA 5' UTR (NM_015954, exon 1 of 9) 5' UTR (NM_015954, exon 1 of 9) 203 NM_015954 51071 Hs.39429 NM_015954 HPRD:13138 DERA DEOC deoxyribose-phosphate aldolase (putative) protein-coding 13-PTNLD9-TUMOR_peak_12287 chr12 21572232 21572429 + 9.80270 NA Intergenic L1PA2|LINE|L1 -18208 NM_024854 79912 Hs.709545 NM_024854 PYROXD1 - pyridine nucleotide-disulphide oxidoreductase domain 1 protein-coding 13-PTNLD9-TUMOR_peak_14281 chr12 127567984 127568130 + 9.80270 NA Intergenic L1ME3A|LINE|L1 -23115 NR_104646 101927592 Hs.385663 NR_104646 ENSG00000249345 LOC101927592 - uncharacterized LOC101927592 ncRNA 13-PTNLD9-TUMOR_peak_29901 chr2 223621821 223622012 + 9.80270 NA Intergenic L2b|LINE|L2 85459 NM_058165 116255 Hs.344090 NM_058165 HPRD:14729 MOGAT1 DGAT2L|DGAT2L1|MGAT1 monoacylglycerol O-acyltransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_9980 chr11 60935044 60935215 + 9.80270 NA Intergenic MLT1J|LTR|ERVL-MaLR -6213 NM_017966 55048 Hs.523715 NM_017966 HPRD:15652 VPS37C - vacuolar protein sorting 37 homolog C (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_39468 chr4 141663621 141663754 + 9.80270 NA intron (NM_015130, intron 1 of 20) AluSg4|SINE|Alu 13784 NM_015130 23158 Hs.480819 NM_015130 HPRD:11115 TBC1D9 MDR1 TBC1 domain family, member 9 (with GRAM domain) protein-coding 13-PTNLD9-TUMOR_peak_30176 chr2 241164262 241164485 + 9.80270 NA Intergenic Intergenic -84300 NM_148961 150677 Hs.148586 NM_148961 HPRD:09714 OTOS OTOSP otospiralin protein-coding 13-PTNLD9-TUMOR_peak_52588 chr9 419617 420199 + 9.80270 NA intron (NM_001193536, intron 29 of 46) intron (NM_001193536, intron 29 of 46) -50386 NM_001256876 23189 Hs.306764 NM_015158 HPRD:09651 KANK1 ANKRD15|CPSQ2|KANK KN motif and ankyrin repeat domains 1 protein-coding 13-PTNLD9-TUMOR_peak_20925 chr17 35969417 35969710 + 9.80270 NA promoter-TSS (NM_001163544) promoter-TSS (NM_001163544) -77 NM_001163545 11276 Hs.594647 NM_007247 HPRD:06291 SYNRG AP1GBP1|SYNG synergin, gamma protein-coding 13-PTNLD9-TUMOR_peak_43965 chr6 16947711 16948058 + 9.80270 NA Intergenic Intergenic -154605 NM_001190766 401236 Hs.677399 NM_001190766 ENSG00000230873 STMND1 - stathmin domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_32406 chr21 43206875 43207019 + 9.80270 NA Intergenic Intergenic -19698 NM_020639 54101 Hs.517310 NM_020639 HPRD:10419 RIPK4 ANKK2|ANKRD3|DIK|NKRD3|PKK|PPS2|RIP4 receptor-interacting serine-threonine kinase 4 protein-coding 13-PTNLD9-TUMOR_peak_56104 chrX 70503367 70503521 + 9.80270 NA 5' UTR (NM_001145410, exon 1 of 10) 5' UTR (NM_001145410, exon 1 of 10) 402 NM_001145408 4841 Hs.533282 NM_007363 HPRD:02098 NONO NMT55|NRB54|P54|P54NRB|PPP1R114 non-POU domain containing, octamer-binding protein-coding 13-PTNLD9-TUMOR_peak_49139 chr7 131593976 131594165 + 9.80270 NA promoter-TSS (NR_110836) promoter-TSS (NR_110836) -909 NR_110836 101928782 Hs.571369 NR_110836 ENSG00000224865 LOC101928782 - uncharacterized LOC101928782 ncRNA 13-PTNLD9-TUMOR_peak_38424 chr4 54457604 54457792 + 9.80270 NA promoter-TSS (NM_001126328) promoter-TSS (NM_001126328) 55 NM_001126328 84708 Hs.518760 NM_032622 HPRD:17287 LNX1 LNX|MPDZ|PDZRN2 ligand of numb-protein X 1, E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_7167 chr10 44118930 44119099 + 9.80270 NA Intergenic MSTD|LTR|ERVL-MaLR -5251 NR_038867 414201 Hs.666576 NR_038867 ENSG00000223910 ZNF32-AS3 C10orf44|ZNF32-OT1|bA402L1.3 ZNF32 antisense RNA 3 ncRNA 13-PTNLD9-TUMOR_peak_47405 chr7 46202179 46202428 + 9.80270 NA Intergenic Intergenic -241432 NM_001013398 3486 Hs.450230 NM_000598 HPRD:00899 IGFBP3 BP-53|IBP3 insulin-like growth factor binding protein 3 protein-coding 13-PTNLD9-TUMOR_peak_8238 chr10 104614199 104614391 + 9.80270 NA intron (NM_001136200, intron 1 of 4) CpG 328 NR_037644 100528007 Hs.720370 NR_037644 C10orf32-ASMT C10orf32-AS3MT C10orf32-ASMT readthrough (NMD candidate) ncRNA 13-PTNLD9-TUMOR_peak_5467 chr1 222008210 222008399 + 9.80270 NA Intergenic Intergenic -92786 NM_007207 11221 Hs.497822 NM_007207 HPRD:12320 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 13-PTNLD9-TUMOR_peak_21397 chr17 47533657 47533904 + 9.80270 NA Intergenic L2a|LINE|L2 5331 NR_110805 101927207 Hs.638402 NR_110805 ENSG00000249497 LOC101927207 - uncharacterized LOC101927207 ncRNA 13-PTNLD9-TUMOR_peak_37864 chr4 8021747 8021964 + 9.80270 NA intron (NM_001286688, intron 7 of 14) intron (NM_001286688, intron 7 of 14) 51888 NM_001286688 84448 Hs.233404 NM_032432 ENSG00000163995 ABLIM2 - actin binding LIM protein family, member 2 protein-coding 13-PTNLD9-TUMOR_peak_55798 chrX 47415579 47415780 + 9.80270 NA Intergenic Intergenic -4820 NM_001654 369 Hs.446641 NM_001654 HPRD:02405 ARAF A-RAF|ARAF1|PKS2|RAFA1 A-Raf proto-oncogene, serine/threonine kinase protein-coding 13-PTNLD9-TUMOR_peak_50577 chr8 33186016 33186136 + 9.80115 NA Intergenic Intergenic 144588 NM_032664 84750 Hs.458713 NM_032664 ENSG00000172728 FUT10 - fucosyltransferase 10 (alpha (1,3) fucosyltransferase) protein-coding 13-PTNLD9-TUMOR_peak_30911 chr20 35093608 35093731 + 9.79525 NA intron (NM_183006, intron 1 of 6) intron (NM_183006, intron 1 of 6) 3483 NM_183006 22839 Hs.249600 NM_014902 HPRD:16826 DLGAP4 DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4 discs, large (Drosophila) homolog-associated protein 4 protein-coding 13-PTNLD9-TUMOR_peak_21730 chr17 61538306 61538438 + 9.79452 NA Intergenic Intergenic -14650 NM_001915 1534 Hs.355264 NM_001915 HPRD:02485 CYB561 CYB561A1|FRRS2 cytochrome b561 protein-coding 13-PTNLD9-TUMOR_peak_5715 chr1 228604023 228604152 + 9.79452 NA intron (NM_016102, intron 1 of 6) CpG 496 NM_001024940 51127 Hs.121748 NM_016102 HPRD:05839 TRIM17 RBCC|RNF16|terf tripartite motif containing 17 protein-coding 13-PTNLD9-TUMOR_peak_46915 chr7 15055772 15055915 + 9.79452 NA Intergenic Intergenic -174768 NM_004080 1607 Hs.567255 NM_004080 HPRD:06819 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase, beta 90kDa protein-coding 13-PTNLD9-TUMOR_peak_29827 chr2 219187394 219187777 + 9.79452 NA promoter-TSS (NM_022572) promoter-TSS (NM_022572) -317 NM_022572 25953 Hs.98475 NM_015488 HPRD:11369 PNKD BRP17|DYT8|FPD1|KIPP1184|MR-1|MR1|PDC|PKND1|TAHCCP2 paroxysmal nonkinesigenic dyskinesia protein-coding 13-PTNLD9-TUMOR_peak_43493 chr6 2989801 2989929 + 9.79386 NA non-coding (NR_026855, exon 2 of 2) non-coding (NR_026855, exon 2 of 2) 1664 NR_026856 401232 Hs.720158 NM_207495 HPRD:16819 LINC01011 DKFZP686I15217 long intergenic non-protein coding RNA 1011 ncRNA 13-PTNLD9-TUMOR_peak_7517 chr10 64605221 64605345 + 9.79217 NA Intergenic Intergenic -26356 NM_001136178 1959 Hs.1395 NM_000399 HPRD:00551 EGR2 AT591|CMT1D|CMT4E|KROX20 early growth response 2 protein-coding 13-PTNLD9-TUMOR_peak_34452 chr3 46985401 46985507 + 9.79217 NA intron (NM_001277074, intron 1 of 6) intron (NM_001277074, intron 1 of 6) 32537 NR_102269 151903 Hs.631918 NM_144716 HPRD:13007 CCDC12 - coiled-coil domain containing 12 protein-coding 13-PTNLD9-TUMOR_peak_54522 chr9 116943661 116943806 + 9.79217 NA intron (NM_032888, intron 4 of 60) intron (NM_032888, intron 4 of 60) 25502 NM_032888 85301 Hs.494892 NM_032888 COL27A1 STLS collagen, type XXVII, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_49170 chr7 133335406 133335524 + 9.79217 NA intron (NM_021807, intron 10 of 17) intron (NM_021807, intron 10 of 17) 174176 NR_120513 101928861 Hs.675747 NR_120513 LOC101928861 - uncharacterized LOC101928861 ncRNA 13-PTNLD9-TUMOR_peak_48852 chr7 115851449 115851634 + 9.79217 NA intron (NM_015641, intron 1 of 6) intron (NM_015641, intron 1 of 6) 994 NM_015641 26136 Hs.592286 NM_015641 HPRD:05833 TES TESS|TESS-2 testis derived transcript (3 LIM domains) protein-coding 13-PTNLD9-TUMOR_peak_10595 chr11 73372025 73372204 + 9.79217 NA intron (NM_001130034, intron 7 of 7) CpG 12379 NM_001130036 58473 Hs.445489 NM_021200 HPRD:09630 PLEKHB1 KPL1|PHR1|PHRET1 pleckstrin homology domain containing, family B (evectins) member 1 protein-coding 13-PTNLD9-TUMOR_peak_38926 chr4 98417855 98417982 + 9.79217 NA Intergenic Intergenic 129841 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_12501 chr12 34515976 34516359 + 9.79217 NA Intergenic GSATII|Satellite|centr 340951 NM_032834 84920 Hs.102971 NM_032834 ALG10 ALG10A|DIE2|KCR1 ALG10, alpha-1,2-glucosyltransferase protein-coding 13-PTNLD9-TUMOR_peak_7709 chr10 73758614 73758821 + 9.79217 NA intron (NM_004273, intron 1 of 2) intron (NM_004273, intron 1 of 2) 34597 NM_004273 9469 Hs.158304 NM_004273 HPRD:07052 CHST3 C6ST|C6ST1|HSD carbohydrate (chondroitin 6) sulfotransferase 3 protein-coding 13-PTNLD9-TUMOR_peak_54208 chr9 101781777 101782079 + 9.79217 NA intron (NM_001855, intron 11 of 41) MIR|SINE|MIR 75933 NM_001855 1306 Hs.409034 NM_001855 HPRD:00380 COL15A1 - collagen, type XV, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_11912 chr12 5399495 5400079 + 9.79217 NA Intergenic L1PA3|LINE|L1 -47470 NR_120477 101929584 Hs.436529 NR_120476 ENSG00000256115 LOC101929584 - uncharacterized LOC101929584 ncRNA 13-PTNLD9-TUMOR_peak_22075 chr17 74566102 74566299 + 9.79217 NA intron (NM_006456, intron 6 of 8) intron (NM_006456, intron 6 of 8) 8485 NR_004395 677848 NR_004395 ENSG00000163597 SNORD1A R38A|snR38A small nucleolar RNA, C/D box 1A snoRNA 13-PTNLD9-TUMOR_peak_52393 chr8 143820234 143820358 + 9.78824 NA Intergenic Intergenic 3533 NM_020427 57152 Hs.103505 NM_020427 HPRD:05836 SLURP1 ANUP|ARS|ArsB|LY6LS|MDM secreted LY6/PLAUR domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_6307 chr10 3509741 3510063 + 9.78824 NA Intergenic Intergenic -294869 NM_001242307 10531 Hs.528300 NM_014889 HPRD:07142 PITRM1 MP1|PreP pitrilysin metallopeptidase 1 protein-coding 13-PTNLD9-TUMOR_peak_32620 chr21 48118176 48118403 + 9.78492 NA Intergenic TAR1|Satellite|telo 62782 NM_206962 3275 Hs.154163 NM_001535 HPRD:09060 PRMT2 HRMT1L1 protein arginine methyltransferase 2 protein-coding 13-PTNLD9-TUMOR_peak_10524 chr11 71499109 71499353 + 9.77212 NA intron (NM_001099653, intron 1 of 4) intron (NM_001099653, intron 1 of 4) 674 NM_152563 55199 Hs.567527 NM_018172 HPRD:13337 FAM86C1 FAM86C family with sequence similarity 86, member C1 protein-coding 13-PTNLD9-TUMOR_peak_5296 chr1 207039563 207039746 + 9.76927 NA exon (NM_018724, exon 2 of 5) exon (NM_018724, exon 2 of 5) 500 NM_018724 50604 Hs.272373 NM_018724 IL20 IL-20|IL10D|ZCYTO10 interleukin 20 protein-coding 13-PTNLD9-TUMOR_peak_19319 chr16 50733808 50733946 + 9.76927 NA intron (NM_001293557, intron 1 of 10) intron (NM_001293557, intron 1 of 10) 616 NM_001293557 64127 Hs.592072 NM_022162 HPRD:05810 NOD2 ACUG|BLAU|CARD15|CD|CLR16.3|IBD1|NLRC2|NOD2B|PSORAS1 nucleotide-binding oligomerization domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_14217 chr12 124997693 124997845 + 9.76515 NA intron (NM_001077261, intron 2 of 47) intron (NM_001077261, intron 2 of 47) 54241 NM_006312 9612 Hs.137510 NM_006312 HPRD:02910 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 13-PTNLD9-TUMOR_peak_18867 chr16 28205310 28205497 + 9.76515 NA intron (NM_015171, intron 1 of 23) MIRb|SINE|MIR 17836 NM_001270940 23214 Hs.460468 NM_015171 HPRD:10525 XPO6 EXP6|RANBP20 exportin 6 protein-coding 13-PTNLD9-TUMOR_peak_52106 chr8 131776347 131776647 + 9.76515 NA Intergenic MLT1F1|LTR|ERVL-MaLR 276338 NM_001115 114 Hs.591859 NM_001115 HPRD:00051 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 (brain) protein-coding 13-PTNLD9-TUMOR_peak_7383 chr10 52788999 52789171 + 9.76515 NA intron (NM_001098512, intron 1 of 17) Eulor2A|DNA?|DNA? 38174 NM_001098512 5592 Hs.407535 NM_006258 HPRD:08910 PRKG1 1|AAT8|PKG|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha protein kinase, cGMP-dependent, type I protein-coding 13-PTNLD9-TUMOR_peak_42732 chr5 153899087 153899204 + 9.76515 NA Intergenic L2a|LINE|L2 -41321 NM_004821 9421 Hs.152531 NM_004821 HPRD:03871 HAND1 Hxt|Thing1|bHLHa27|eHand heart and neural crest derivatives expressed 1 protein-coding 13-PTNLD9-TUMOR_peak_4158 chr1 161575703 161575827 + 9.76025 NA promoter-TSS (NR_024151) promoter-TSS (NR_024151) -84 NR_024151 3311 Hs.662180 NR_024151 HSPA7 HSP70B heat shock 70kDa protein 7 (HSP70B) pseudo 13-PTNLD9-TUMOR_peak_17540 chr15 69758506 69758626 + 9.76025 NA Intergenic Intergenic 13407 NM_001003 6176 Hs.356502 NM_001003 HPRD:01611 RPLP1 LP1|P1|RPP1 ribosomal protein, large, P1 protein-coding 13-PTNLD9-TUMOR_peak_5906 chr1 234671567 234671811 + 9.75979 NA Intergenic Intergenic -4164 NR_038426 100506795 Hs.448989 NR_038426 ENSG00000231768 LINC01354 - long intergenic non-protein coding RNA 1354 ncRNA 13-PTNLD9-TUMOR_peak_41544 chr5 94782430 94782548 + 9.75929 NA intron (NM_152548, intron 8 of 9) intron (NM_152548, intron 8 of 9) 55441 NM_152548 153643 Hs.276287 NM_152548 HPRD:08686 FAM81B - family with sequence similarity 81, member B protein-coding 13-PTNLD9-TUMOR_peak_2147 chr1 68306229 68306441 + 9.75929 NA intron (NR_040077, intron 1 of 9) intron (NR_040077, intron 1 of 9) -7180 NM_018841 55970 Hs.431101 NM_018841 HPRD:13592 GNG12 - guanine nucleotide binding protein (G protein), gamma 12 protein-coding 13-PTNLD9-TUMOR_peak_1196 chr1 38206864 38207031 + 9.75929 NA intron (NM_001099439, intron 5 of 16) intron (NM_001099439, intron 5 of 16) 23877 NM_001099439 284656 Hs.129435 NM_173641 HPRD:08163 EPHA10 - EPH receptor A10 protein-coding 13-PTNLD9-TUMOR_peak_31045 chr20 39075945 39076055 + 9.75929 NA Intergenic Intergenic 241880 NM_005461 9935 Hs.169487 NM_005461 HPRD:07129 MAFB KRML|MCTO v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog B protein-coding 13-PTNLD9-TUMOR_peak_56626 chrX 150994536 150994949 + 9.75929 NA Intergenic Intergenic -86619 NM_001011548 4103 Hs.37107 NM_002362 HPRD:02167 MAGEA4 CT1.4|MAGE-41|MAGE-X2|MAGE4|MAGE4A|MAGE4B melanoma antigen family A, 4 protein-coding 13-PTNLD9-TUMOR_peak_26775 chr2 45465238 45465547 + 9.75929 NA intron (NR_033831, intron 1 of 5) intron (NR_033831, intron 1 of 5) 16688 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 13-PTNLD9-TUMOR_peak_4235 chr1 164763693 164763848 + 9.75929 NA intron (NM_001204961, intron 3 of 7) intron (NM_001204961, intron 3 of 7) -19892 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 13-PTNLD9-TUMOR_peak_11080 chr11 103759332 103759575 + 9.75929 NA Intergenic L2c|LINE|L2 38819 NR_039842 100616457 NR_039842 miRBase:MI0017326 MIR4693 - microRNA 4693 ncRNA 13-PTNLD9-TUMOR_peak_30474 chr20 15025956 15026135 + 9.75929 NA intron (NM_080676, intron 5 of 16) intron (NM_080676, intron 5 of 16) -115881 NR_037841 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_50254 chr8 21924161 21924445 + 9.75929 NA 5' UTR (NM_001978, exon 2 of 16) 5' UTR (NM_001978, exon 2 of 16) 7617 NM_001114138 2039 Hs.106124 NM_001978 HPRD:00506 DMTN DMT|EPB49 dematin actin binding protein protein-coding 13-PTNLD9-TUMOR_peak_17651 chr15 74699763 74700078 + 9.75929 NA Intergenic Intergenic 3853 NR_106941 102465530 NR_106941 MIR6881 hsa-mir-6881 microRNA 6881 ncRNA 13-PTNLD9-TUMOR_peak_19373 chr16 54545370 54545495 + 9.75929 NA Intergenic Intergenic -225054 NM_024336 79191 Hs.499205 NM_024336 HPRD:17162 IRX3 IRX-1|IRXB1 iroquois homeobox 3 protein-coding 13-PTNLD9-TUMOR_peak_27050 chr2 63841873 63841989 + 9.75929 NA Intergenic MER39|LTR|ERV1 25646 NM_001199112 4190 Hs.526521 NM_005917 HPRD:01100 MDH1 HEL-S-32|MDH-s|MDHA|MGC:1375|MOR2 malate dehydrogenase 1, NAD (soluble) protein-coding 13-PTNLD9-TUMOR_peak_40240 chr5 6733187 6733315 + 9.75929 NA intron (NM_001171805, intron 1 of 12) intron (NM_001171805, intron 1 of 12) -12850 NM_001171806 11044 Hs.481542 NM_006999 HPRD:09239 PAPD7 LAK-1|LAK1|POLK|POLS|TRF4|TRF4-1|TRF41|TUTASE5 PAP associated domain containing 7 protein-coding 13-PTNLD9-TUMOR_peak_27697 chr2 96192159 96192404 + 9.75929 NA Intergenic CpG -41802 NM_001164464 653192 Hs.723811 NM_001164464 TRIM43B - tripartite motif containing 43B protein-coding 13-PTNLD9-TUMOR_peak_35452 chr3 115411880 115411995 + 9.75929 NA intron (NM_002045, intron 2 of 2) intron (NM_002045, intron 2 of 2) 69786 NM_001130064 2596 Hs.134974 NM_002045 HPRD:01198 GAP43 B-50|PP46 growth associated protein 43 protein-coding 13-PTNLD9-TUMOR_peak_16443 chr14 91586384 91586508 + 9.75929 NA intron (NM_001286471, intron 1 of 13) MLT2A2|LTR|ERVL 5402 NM_001286471 80017 Hs.309849 NM_024952 HPRD:16612 C14orf159 - chromosome 14 open reading frame 159 protein-coding 13-PTNLD9-TUMOR_peak_54235 chr9 102860553 102860660 + 9.75926 NA promoter-TSS (NM_183245) promoter-TSS (NM_183245) 724 NM_015051 23071 Hs.154023 NM_015051 HPRD:10290 ERP44 PDIA10|TXNDC4 endoplasmic reticulum protein 44 protein-coding 13-PTNLD9-TUMOR_peak_18048 chr15 98547320 98547492 + 9.75926 NA Intergenic Intergenic 43473 NM_183376 91947 Hs.6093 NM_183376 HPRD:10664 ARRDC4 - arrestin domain containing 4 protein-coding 13-PTNLD9-TUMOR_peak_24145 chr19 13951401 13951579 + 9.75918 NA Intergenic Intergenic -4017 NR_029495 407010 NR_029495 miRBase:MI0000079 MIR23A MIRN23A|hsa-mir-23a|miRNA23A microRNA 23a ncRNA 13-PTNLD9-TUMOR_peak_42635 chr5 149852584 149852757 + 9.75813 NA Intergenic Intergenic 12885 NR_105061 102546298 Hs.570892 NR_105061 LOC102546298 - uncharacterized LOC102546298 ncRNA 13-PTNLD9-TUMOR_peak_49518 chr7 143916328 143916613 + 9.75813 NA Intergenic Intergenic -9504 NR_046931 100873765 NR_046931 ENSG00000223280 RNU6-57P RNU6-57 RNA, U6 small nuclear 57, pseudogene snRNA 13-PTNLD9-TUMOR_peak_27513 chr2 87778641 87778753 + 9.75813 NA intron (NR_024204, intron 2 of 3) intron (NR_024204, intron 2 of 3) 23723 NR_024206 112597 Hs.652166 NM_052871 HPRD:14654 LINC00152 C2orf59|NCRNA00152 long intergenic non-protein coding RNA 152 ncRNA 13-PTNLD9-TUMOR_peak_5369 chr1 212769574 212769895 + 9.75174 NA intron (NM_001030287, intron 1 of 3) intron (NM_001030287, intron 1 of 3) -12236 NM_001674 467 Hs.460 NM_001674 HPRD:04395 ATF3 - activating transcription factor 3 protein-coding 13-PTNLD9-TUMOR_peak_34155 chr3 29736381 29736521 + 9.75174 NA intron (NM_001003792, intron 4 of 13) intron (NM_001003792, intron 4 of 13) 239196 NR_046556 100873977 Hs.581453 NR_046556 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_30275 chr20 1820369 1820740 + 9.75174 NA Intergenic Intergenic -54259 NM_001040022 140885 Hs.581021 NM_080792 HPRD:03912 SIRPA BIT|CD172A|MFR|MYD-1|P84|PTPNS1|SHPS1|SIRP signal-regulatory protein alpha protein-coding 13-PTNLD9-TUMOR_peak_48847 chr7 114459756 114459967 + 9.75174 NA Intergenic Intergenic -102348 NM_001166346 29969 Hs.741413 NM_199072 HPRD:17103 MDFIC HIC MyoD family inhibitor domain containing protein-coding 13-PTNLD9-TUMOR_peak_53601 chr9 73450378 73450541 + 9.75174 NA intron (NM_001007471, intron 5 of 24) intron (NM_001007471, intron 5 of 24) -25459 NR_029621 406987 NR_029621 MIR204 MIRN204|miRNA204 microRNA 204 ncRNA 13-PTNLD9-TUMOR_peak_27333 chr2 75327595 75327741 + 9.75174 NA intron (NM_015727, intron 2 of 3) L2c|LINE|L2 9729 NR_049796 100846995 NR_049796 miRBase:MI0017866 MIR5000 - microRNA 5000 ncRNA 13-PTNLD9-TUMOR_peak_7990 chr10 91152271 91152405 + 9.75174 NA promoter-TSS (NM_001270928) promoter-TSS (NM_001270928) 35 NM_001270927 3434 Hs.20315 NM_001548 IFIT1 C56|G10P1|IFI-56|IFI-56K|IFI56|IFIT-1|IFNAI1|ISG56|P56|RNM561 interferon-induced protein with tetratricopeptide repeats 1 protein-coding 13-PTNLD9-TUMOR_peak_29363 chr2 191651205 191651425 + 9.75174 NA Intergenic Intergenic -94232 NM_001256310 2744 Hs.116448 NM_014905 HPRD:00700 GLS AAD20|GAC|GAM|GLS1|KGA glutaminase protein-coding 13-PTNLD9-TUMOR_peak_14831 chr13 65503225 65503540 + 9.75174 NA Intergenic ERVL-B4-int|LTR|ERVL -1191231 NR_047011 100874157 Hs.539670 NR_047011 ENSG00000231061 LINC00395 - long intergenic non-protein coding RNA 395 ncRNA 13-PTNLD9-TUMOR_peak_13312 chr12 70787619 70787857 + 9.75174 NA intron (NM_014505, intron 1 of 2) L2c|LINE|L2 27676 NM_014505 27345 Hs.525529 NM_014505 HPRD:05564 KCNMB4 - potassium large conductance calcium-activated channel, subfamily M, beta member 4 protein-coding 13-PTNLD9-TUMOR_peak_6762 chr10 28343241 28343441 + 9.75174 NA intron (NM_173496, intron 18 of 18) intron (NM_173496, intron 18 of 18) -55357 NM_018076 55130 Hs.127530 NM_018076 HPRD:10663 ARMC4 CILD23 armadillo repeat containing 4 protein-coding 13-PTNLD9-TUMOR_peak_38236 chr4 41321592 41321787 + 9.75174 NA Intergenic L2a|LINE|L2 -39935 NM_001289124 22998 Hs.335163 NM_014988 HPRD:11125 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 13-PTNLD9-TUMOR_peak_29848 chr2 219773731 219773920 + 9.75174 NA intron (NR_110238, intron 3 of 4) CpG 21534 NR_110238 101928537 Hs.611129 NR_110238 ENSG00000228135 LINC01494 - long intergenic non-protein coding RNA 1494 ncRNA 13-PTNLD9-TUMOR_peak_5137 chr1 204332863 204333000 + 9.75154 NA Intergenic Intergenic -3874 NM_014935 22874 Hs.253146 NM_014935 HPRD:09685 PLEKHA6 PEPP-3|PEPP3 pleckstrin homology domain containing, family A member 6 protein-coding 13-PTNLD9-TUMOR_peak_33410 chr22 44733341 44733725 + 9.75154 NA Intergenic Intergenic -24802 NM_001099294 85352 Hs.6829 NM_001099294 ENSG00000138944 KIAA1644 - KIAA1644 protein-coding 13-PTNLD9-TUMOR_peak_24501 chr19 21324987 21325215 + 9.75154 NA intron (NM_133473, intron 1 of 4) intron (NM_133473, intron 1 of 4) 261 NM_133473 170959 Hs.656394 NM_133473 HPRD:15789 ZNF431 - zinc finger protein 431 protein-coding 13-PTNLD9-TUMOR_peak_42825 chr5 158883801 158884035 + 9.75154 NA intron (NR_027110, intron 4 of 6) intron (NR_027110, intron 4 of 6) 9366 NR_027110 285627 Hs.552766 NR_027110 ENSG00000253298 LOC285627 - uncharacterized LOC285627 ncRNA 13-PTNLD9-TUMOR_peak_1212 chr1 38589050 38589311 + 9.75154 NA Intergenic MIR3|SINE|MIR 34277 NR_037432 100500801 NR_037432 miRBase:MI0016060 MIR3659 - microRNA 3659 ncRNA 13-PTNLD9-TUMOR_peak_43998 chr6 18016473 18016723 + 9.75154 NA Intergenic Intergenic -28744 NM_001243423 63971 Hs.94499 NM_022113 HPRD:09256 KIF13A RBKIN|bA500C11.2 kinesin family member 13A protein-coding 13-PTNLD9-TUMOR_peak_23965 chr19 10975216 10975333 + 9.75154 NA intron (NM_001136482, intron 6 of 6) L2b|LINE|L2 -6979 NM_199141 10498 Hs.323213 NM_199141 HPRD:09158 CARM1 PRMT4 coactivator-associated arginine methyltransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_38607 chr4 76555671 76556108 + 9.75154 NA promoter-TSS (NM_003948) promoter-TSS (NM_003948) -168 NM_003948 8999 Hs.591698 NM_003948 CDKL2 KKIAMRE|P56 cyclin-dependent kinase-like 2 (CDC2-related kinase) protein-coding 13-PTNLD9-TUMOR_peak_26483 chr2 30388547 30388769 + 9.75154 NA Intergenic Intergenic 18908 NM_016061 51646 Hs.515890 NM_016061 HPRD:18312 YPEL5 - yippee-like 5 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_53477 chr9 69065275 69065634 + 9.74470 NA Intergenic CpG 82400 NR_002836 595135 Hs.571593 NR_002836 ENSG00000227558 PGM5P2 - phosphoglucomutase 5 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_54660 chr9 124049713 124049915 + 9.74470 NA intron (NM_001258030, intron 1 of 16) intron (NM_001258030, intron 1 of 16) 956 NM_001258030 2934 Hs.522373 NM_000177 HPRD:00674 GSN ADF|AGEL gelsolin protein-coding 13-PTNLD9-TUMOR_peak_5136 chr1 204293107 204293234 + 9.73859 NA intron (NM_014935, intron 1 of 22) intron (NM_014935, intron 1 of 22) 35887 NM_014935 22874 Hs.253146 NM_014935 HPRD:09685 PLEKHA6 PEPP-3|PEPP3 pleckstrin homology domain containing, family A member 6 protein-coding 13-PTNLD9-TUMOR_peak_5259 chr1 206490364 206490512 + 9.73126 NA Intergenic Intergenic -25762 NM_001271870 647135 Hs.497575 NM_001271870 SRGAP2B SRGAP2L|SRGAP2P2 SLIT-ROBO Rho GTPase activating protein 2B protein-coding 13-PTNLD9-TUMOR_peak_53939 chr9 92218043 92218179 + 9.73085 NA Intergenic Intergenic -1816 NM_006705 10912 Hs.9701 NM_006705 HPRD:05383 GADD45G CR6|DDIT2|GADD45gamma|GRP17 growth arrest and DNA-damage-inducible, gamma protein-coding 13-PTNLD9-TUMOR_peak_37981 chr4 10110871 10110977 + 9.73085 NA intron (NM_017491, intron 2 of 14) intron (NM_017491, intron 2 of 14) 7649 NM_005112 9948 Hs.128548 NM_005112 HPRD:09199 WDR1 AIP1|HEL-S-52|NORI-1 WD repeat domain 1 protein-coding 13-PTNLD9-TUMOR_peak_30901 chr20 34674763 34674994 + 9.73014 NA Intergenic Intergenic -4548 NM_001258331 2036 Hs.437422 NM_012156 HPRD:04193 EPB41L1 4.1N|MRD11 erythrocyte membrane protein band 4.1-like 1 protein-coding 13-PTNLD9-TUMOR_peak_30311 chr20 3203555 3203705 + 9.73014 NA intron (NM_181493, intron 7 of 7) intron (NM_181493, intron 7 of 7) 13496 NM_181493 3704 Hs.415299 NM_033453 HPRD:08856 ITPA C20orf37|HLC14-06-P|dJ794I6.3 inosine triphosphatase (nucleoside triphosphate pyrophosphatase) protein-coding 13-PTNLD9-TUMOR_peak_28685 chr2 149403663 149403838 + 9.73014 NA intron (NM_015630, intron 1 of 13) intron (NM_015630, intron 1 of 13) 1190 NM_015630 26122 Hs.23270 NM_015630 HPRD:13274 EPC2 EPC-LIKE enhancer of polycomb homolog 2 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_2718 chr1 108741900 108742087 + 9.73014 NA intron (NM_013386, intron 1 of 9) intron (NM_013386, intron 1 of 9) 987 NM_013386 29957 Hs.656870 NM_013386 HPRD:12290 SLC25A24 APC1|SCAMC-1 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24 protein-coding 13-PTNLD9-TUMOR_peak_3688 chr1 152730328 152730473 + 9.72875 NA promoter-TSS (NM_001025231) promoter-TSS (NM_001025231) -106 NM_001025231 448834 Hs.149386 NM_001025231 ENSG00000203786 KPRP C1orf45 keratinocyte proline-rich protein protein-coding 13-PTNLD9-TUMOR_peak_31209 chr20 44518787 44518926 + 9.72875 NA promoter-TSS (NM_001127695) promoter-TSS (NM_001127695) -735 NM_000308 5476 Hs.609336 NM_000308 HPRD:02020 CTSA GLB2|GSL|NGBE|PPCA|PPGB cathepsin A protein-coding 13-PTNLD9-TUMOR_peak_25309 chr19 49087564 49087758 + 9.72875 NA intron (NM_004605, intron 1 of 5) LTR41|LTR|ERVL 8668 NM_004605 6820 Hs.369331 NM_004605 HPRD:04991 SULT2B1 HSST2 sulfotransferase family, cytosolic, 2B, member 1 protein-coding 13-PTNLD9-TUMOR_peak_15323 chr14 23538189 23538303 + 9.72875 NA intron (NM_014977, intron 9 of 18) intron (NM_014977, intron 9 of 18) 2533 NM_001164816 22985 Hs.124490 NM_014977 HPRD:05191 ACIN1 ACINUS|ACN|fSAP152 apoptotic chromatin condensation inducer 1 protein-coding 13-PTNLD9-TUMOR_peak_42480 chr5 145236192 145236298 + 9.72713 NA Intergenic L2a|LINE|L2 16286 NM_001080516 643226 Hs.570895 NM_001080516 ENSG00000204928 GRXCR2 DFNB101 glutaredoxin, cysteine rich 2 protein-coding 13-PTNLD9-TUMOR_peak_41453 chr5 82771434 82771582 + 9.72713 NA intron (NM_001126336, intron 1 of 12) intron (NM_001126336, intron 1 of 12) 4015 NM_001164097 1462 Hs.643801 NM_004385 HPRD:00340 VCAN CSPG2|ERVR|GHAP|PG-M|WGN|WGN1 versican protein-coding 13-PTNLD9-TUMOR_peak_6643 chr10 21786198 21786367 + 9.72713 NA promoter-TSS (NR_031736) promoter-TSS (NR_031736) -69 NM_001010911 399726 Hs.315568 NM_001010911 CASC10 C10orf114|bA418C1.3 cancer susceptibility candidate 10 protein-coding 13-PTNLD9-TUMOR_peak_48242 chr7 87976600 87976703 + 9.72713 NA Intergenic Intergenic -40423 NM_001205315 79689 Hs.521008 NM_024636 HPRD:11637 STEAP4 STAMP2|TIARP|TNFAIP9 STEAP family member 4 protein-coding 13-PTNLD9-TUMOR_peak_12345 chr12 26392143 26392266 + 9.72713 NA Intergenic Intergenic 43698 NM_005086 8082 Hs.183428 NM_005086 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 13-PTNLD9-TUMOR_peak_31148 chr20 43359162 43359305 + 9.72713 NA Intergenic LTR3B_|LTR|ERVK -15255 NM_022358 60598 Hs.528664 NM_022358 KCNK15 K2p15.1|KCNK11|KCNK14|KT3.3|TASK-5|TASK5|dJ781B1.1 potassium channel, subfamily K, member 15 protein-coding 13-PTNLD9-TUMOR_peak_53350 chr9 45058136 45058284 + 9.72713 NA Intergenic Intergenic -52920 NR_121606 102723709 Hs.743015 NR_121606 LOC102723709 - uncharacterized LOC102723709 ncRNA 13-PTNLD9-TUMOR_peak_32649 chr22 17518005 17518161 + 9.72713 NA non-coding (NR_015352, exon 1 of 4) non-coding (NR_015352, exon 1 of 4) 623 NR_015352 100130418 Hs.660640 NR_015352 ENSG00000237438 CECR7 SAHL1 cat eye syndrome chromosome region, candidate 7 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_3653 chr1 151945002 151945287 + 9.72713 NA Intergenic Intergenic 21570 NM_002966 6281 Hs.143873 NM_002966 HPRD:00232 S100A10 42C|ANX2L|ANX2LG|CAL1L|CLP11|Ca[1]|GP11|P11|p10 S100 calcium binding protein A10 protein-coding 13-PTNLD9-TUMOR_peak_44698 chr6 33600470 33600605 + 9.72713 NA intron (NM_002224, intron 1 of 57) intron (NM_002224, intron 1 of 57) 11381 NM_002224 3710 Hs.65758 NM_002224 HPRD:00926 ITPR3 IP3R|IP3R3 inositol 1,4,5-trisphosphate receptor, type 3 protein-coding 13-PTNLD9-TUMOR_peak_2802 chr1 110599534 110599703 + 9.72713 NA Intergenic MIRb|SINE|MIR 13704 NM_006492 257 Hs.669953 NM_006492 ALX3 FND|FND1 ALX homeobox 3 protein-coding 13-PTNLD9-TUMOR_peak_55041 chr9 139661013 139661205 + 9.71395 NA Intergenic LTR13|LTR|ERVK -2144 NM_203347 389812 Hs.413902 NM_203347 HPRD:15614 LCN15 PRO6093|UNQ2541 lipocalin 15 protein-coding 13-PTNLD9-TUMOR_peak_13616 chr12 103954398 103954717 + 9.71395 NA TTS (NR_110103) TTS (NR_110103) 12985 NR_110103 101929084 Hs.440981 NR_110103 ENSG00000257762 LOC101929084 - uncharacterized LOC101929084 ncRNA 13-PTNLD9-TUMOR_peak_25087 chr19 44179544 44179896 + 9.71395 NA Intergenic Intergenic -5222 NM_001301037 5329 Hs.466871 NM_002659 HPRD:01421 PLAUR CD87|U-PAR|UPAR|URKR plasminogen activator, urokinase receptor protein-coding 13-PTNLD9-TUMOR_peak_34490 chr3 48342882 48343037 + 9.71395 NA promoter-TSS (NM_005793) promoter-TSS (NM_005793) -111 NM_005793 10201 Hs.465558 NM_005793 HPRD:09219 NME6 IPIA-ALPHA|NDK 6|NM23-H6 NME/NM23 nucleoside diphosphate kinase 6 protein-coding 13-PTNLD9-TUMOR_peak_22548 chr18 9526576 9526833 + 9.71395 NA intron (NM_006788, intron 6 of 9) intron (NM_006788, intron 6 of 9) 51174 NM_006788 10928 Hs.528993 NM_006788 HPRD:09013 RALBP1 RIP1|RLIP1|RLIP76 ralA binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_42999 chr5 171479550 171479758 + 9.71395 NA intron (NM_005990, intron 18 of 18) intron (NM_005990, intron 18 of 18) -45777 NM_033645 23291 Hs.484138 NM_012300 HPRD:07294 FBXW11 BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos F-box and WD repeat domain containing 11 protein-coding 13-PTNLD9-TUMOR_peak_55626 chrX 20532598 20532856 + 9.71395 NA Intergenic Intergenic -247977 NM_004586 6197 Hs.445387 NM_004586 HPRD:02092 RPS6KA3 CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2 ribosomal protein S6 kinase, 90kDa, polypeptide 3 protein-coding 13-PTNLD9-TUMOR_peak_21883 chr17 68071152 68071341 + 9.71395 NA promoter-TSS (NM_170741) promoter-TSS (NM_170741) -120 NM_001270422 3773 Hs.463985 NM_018658 HPRD:16146 KCNJ16 BIR9|KIR5.1 potassium inwardly-rectifying channel, subfamily J, member 16 protein-coding 13-PTNLD9-TUMOR_peak_31462 chr20 49361153 49361305 + 9.71395 NA intron (NM_032521, intron 2 of 2) L2c|LINE|L2 13148 NM_032521 84612 Hs.589848 NM_032521 HPRD:18703 PARD6B PAR6B par-6 family cell polarity regulator beta protein-coding 13-PTNLD9-TUMOR_peak_26809 chr2 46542335 46542479 + 9.71395 NA intron (NM_001430, intron 1 of 15) intron (NM_001430, intron 1 of 15) 17866 NM_001430 2034 Hs.468410 NM_001430 HPRD:06787 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 13-PTNLD9-TUMOR_peak_9635 chr11 44611015 44611202 + 9.71395 NA intron (NM_001024844, intron 2 of 8) intron (NM_001024844, intron 2 of 8) 23967 NM_001024844 3732 Hs.527778 NM_002231 CD82 4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27 CD82 molecule protein-coding 13-PTNLD9-TUMOR_peak_56351 chrX 110924352 110924474 + 9.71395 NA promoter-TSS (NM_001257240) promoter-TSS (NM_001257240) 15 NM_001257241 79868 Hs.443061 NM_018466 HPRD:06542 ALG13 CDG1S|CXorf45|GLT28D1|MDS031|TDRD13|YGL047W ALG13, UDP-N-acetylglucosaminyltransferase subunit protein-coding 13-PTNLD9-TUMOR_peak_27710 chr2 96688593 96688707 + 9.71395 NA non-coding (NR_003698, exon 4 of 4) non-coding (NR_003698, exon 4 of 4) 12077 NM_207328 150763 Hs.348629 NM_207328 HPRD:14089 GPAT2 CT123 glycerol-3-phosphate acyltransferase 2, mitochondrial protein-coding 13-PTNLD9-TUMOR_peak_20302 chr17 4386709 4387086 + 9.71395 NA intron (NM_182538, intron 9 of 11) intron (NM_182538, intron 9 of 11) -15232 NM_001124758 124976 Hs.22824 NM_001124758 SPNS2 - spinster homolog 2 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_23572 chr19 489045 489149 + 9.71395 NA Intergenic CpG -7393 NM_130760 8174 Hs.102598 NM_130760 HPRD:00035 MADCAM1 MACAM1 mucosal vascular addressin cell adhesion molecule 1 protein-coding 13-PTNLD9-TUMOR_peak_45712 chr6 90121973 90122138 + 9.71395 NA promoter-TSS (NM_021244) promoter-TSS (NM_021244) -60 NM_021244 58528 Hs.31712 NM_021244 HPRD:12199 RRAGD RAGD|bA11D8.2.1 Ras-related GTP binding D protein-coding 13-PTNLD9-TUMOR_peak_20000 chr16 85912597 85912793 + 9.71064 NA Intergenic Intergenic -20079 NM_002163 3394 Hs.137427 NM_002163 HPRD:03336 IRF8 H-ICSBP|ICSBP|ICSBP1|IRF-8 interferon regulatory factor 8 protein-coding 13-PTNLD9-TUMOR_peak_13946 chr12 116935041 116935320 + 9.71064 NA Intergenic Intergenic -36047 NR_027345 100287569 Hs.441601 NM_207436 ENSG00000196668 LINC00173 NCRNA00173 long intergenic non-protein coding RNA 173 ncRNA 13-PTNLD9-TUMOR_peak_4352 chr1 169100036 169100243 + 9.71064 NA intron (NM_001677, intron 5 of 5) intron (NM_001677, intron 5 of 5) 24192 NM_001677 481 Hs.291196 NM_001677 HPRD:01663 ATP1B1 ATP1B ATPase, Na+/K+ transporting, beta 1 polypeptide protein-coding 13-PTNLD9-TUMOR_peak_2434 chr1 90440749 90440971 + 9.71064 NA Intergenic Intergenic 19665 NR_002830 492303 Hs.550796 NR_002830 GEMIN8P4 - gem (nuclear organelle) associated protein 8 pseudogene 4 pseudo 13-PTNLD9-TUMOR_peak_42387 chr5 141222900 141223075 + 9.71064 NA Intergenic Intergenic 22780 NM_001278615 5097 Hs.79769 NM_002587 HPRD:04692 PCDH1 PC42|PCDH42 protocadherin 1 protein-coding 13-PTNLD9-TUMOR_peak_33113 chr22 31227001 31227143 + 9.71064 NA intron (NM_001282741, intron 1 of 12) L1M5|LINE|L1 8569 NM_001282741 23762 Hs.517546 NM_030758 HPRD:09471 OSBP2 HLM|ORP-4|ORP4|OSBPL1|OSBPL4 oxysterol binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_40225 chr5 5025931 5026345 + 9.71064 NA Intergenic LTR12F|LTR|ERV1 -8334 NR_026994 340094 Hs.665092 NR_026994 ENSG00000215231 LINC01020 - long intergenic non-protein coding RNA 1020 ncRNA 13-PTNLD9-TUMOR_peak_32893 chr22 22751593 22751861 + 9.71064 NA Intergenic Intergenic 99264 NR_027293 96610 Hs.449601 NM_080926 HPRD:14302 BMS1P20 - BMS1 pseudogene 20 pseudo 13-PTNLD9-TUMOR_peak_53250 chr9 39850911 39851039 + 9.71064 NA Intergenic Intergenic -33967 NM_001085452 647060 Hs.575677 NM_001040065 ENSG00000204848 SPATA31A1 C9orf36|C9orf36A|FAM75A1|FAM75A2|SPATA31A2 SPATA31 subfamily A, member 1 protein-coding 13-PTNLD9-TUMOR_peak_12281 chr12 20522476 20522886 + 9.71064 NA exon (NM_000921, exon 1 of 16) exon (NM_000921, exon 1 of 16) 502 NM_000921 5139 Hs.386791 NM_000921 HPRD:00441 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A phosphodiesterase 3A, cGMP-inhibited protein-coding 13-PTNLD9-TUMOR_peak_1474 chr1 43920211 43920427 + 9.70786 NA promoter-TSS (NM_001243526) promoter-TSS (NM_001243526) -659 NM_001243526 81888 Hs.709864 NM_031207 HPRD:11039 HYI HT036 hydroxypyruvate isomerase (putative) protein-coding 13-PTNLD9-TUMOR_peak_54130 chr9 99775053 99775214 + 9.70786 NA intron (NR_002894, intron 1 of 4) CpG 729 NR_002894 84278 Hs.610084 NR_002894 HPRD:17102 HIATL2 - hippocampus abundant transcript-like 2 pseudo 13-PTNLD9-TUMOR_peak_35481 chr3 118892205 118892448 + 9.70786 NA promoter-TSS (NM_006952) promoter-TSS (NM_006952) -99 NM_006952 7348 Hs.271580 NM_006952 HPRD:03853 UPK1B TSPAN20|UPIB|UPK1 uroplakin 1B protein-coding 13-PTNLD9-TUMOR_peak_22008 chr17 73637612 73637730 + 9.70786 NA TTS (NM_001162995) TTS (NM_001162995) -4975 NM_001162997 100130933 Hs.662541 NM_001162997 ENSG00000259120 SMIM6 C17orf110 small integral membrane protein 6 protein-coding 13-PTNLD9-TUMOR_peak_28717 chr2 151342574 151342740 + 9.70451 NA intron (NM_005168, intron 3 of 5) CpG 1552 NM_005168 390 Hs.6838 NM_005168 HPRD:04233 RND3 ARHE|Rho8|RhoE|memB Rho family GTPase 3 protein-coding 13-PTNLD9-TUMOR_peak_12350 chr12 26431739 26431893 + 9.70451 NA Intergenic AluJo|SINE|Alu 83310 NM_005086 8082 Hs.183428 NM_005086 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 13-PTNLD9-TUMOR_peak_40168 chr5 1004732 1004848 + 9.70172 NA Intergenic CpG -4287 NM_033120 85409 Hs.240951 NM_033120 HPRD:08483 NKD2 Naked2 naked cuticle homolog 2 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_17828 chr15 83194686 83194896 + 9.70172 NA non-coding (NR_111962, exon 10 of 11) non-coding (NR_111962, exon 10 of 11) -11814 NR_026811 80154 Hs.454640 NM_025084 GOLGA2P10 - golgin A2 pseudogene 10 pseudo 13-PTNLD9-TUMOR_peak_39338 chr4 129730754 129730978 + 9.70172 NA promoter-TSS (NM_024900) promoter-TSS (NM_024900) 88 NM_001287437 79960 Hs.12420 NM_024900 HPRD:10151 JADE1 PHF17 jade family PHD finger 1 protein-coding 13-PTNLD9-TUMOR_peak_22128 chr17 75806767 75806889 + 9.70117 NA Intergenic Intergenic 73341 NR_028337 400624 Hs.514521 NM_001001685 FLJ45079 - FLJ45079 protein ncRNA 13-PTNLD9-TUMOR_peak_23287 chr18 55930389 55930647 + 9.70117 NA intron (NM_001243960, intron 5 of 28) intron (NM_001243960, intron 5 of 28) 41764 NM_001144966 23327 Hs.185677 NM_015277 HPRD:05903 NEDD4L NEDD4-2|NEDD4.2|RSP5|hNEDD4-2 neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_55593 chrX 17724844 17725112 + 9.70117 NA intron (NM_001291868, intron 3 of 7) intron (NM_001291868, intron 3 of 7) -30591 NM_006746 6322 Hs.109655 NM_006746 HPRD:02205 SCML1 - sex comb on midleg-like 1 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_19558 chr16 67041374 67041585 + 9.70117 NA intron (NM_001190201, intron 11 of 11) L2c|LINE|L2 7063 NM_001190201 283848 Hs.346947 NM_173815 HPRD:07116 CES4A CES6|CES8 carboxylesterase 4A protein-coding 13-PTNLD9-TUMOR_peak_35053 chr3 81105976 81106478 + 9.70117 NA Intergenic L1PA2|LINE|L1 704723 NM_000158 2632 Hs.436062 NM_000158 HPRD:01985 GBE1 APBD|GBE|GSD4 glucan (1,4-alpha-), branching enzyme 1 protein-coding 13-PTNLD9-TUMOR_peak_13217 chr12 67218137 67218265 + 9.70117 NA Intergenic Intergenic -145276 NM_021150 23426 Hs.505946 NM_021150 ENSG00000155974 GRIP1 GRIP glutamate receptor interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_34154 chr3 29735447 29735677 + 9.70117 NA intron (NM_001003792, intron 4 of 13) intron (NM_001003792, intron 4 of 13) 240085 NR_046556 100873977 Hs.581453 NR_046556 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_20823 chr17 29898247 29898522 + 9.70117 NA Intergenic Intergenic -3904 NR_039878 100616449 NR_039878 miRBase:MI0017362 MIR4725 - microRNA 4725 ncRNA 13-PTNLD9-TUMOR_peak_27408 chr2 85441117 85441318 + 9.70117 NA intron (NM_031283, intron 3 of 11) intron (NM_031283, intron 3 of 11) 80634 NM_031283 83439 Hs.516297 NM_031283 HPRD:06874 TCF7L1 TCF-3|TCF3 transcription factor 7-like 1 (T-cell specific, HMG-box) protein-coding 13-PTNLD9-TUMOR_peak_43371 chr6 138886 139000 + 9.70117 NA Intergenic AluSz|SINE|Alu 9216 NR_109817 441123 NR_109817 ENSG00000170590 LINC00266-3 C6orf88|NCRNA00266-3|NCRNA00266C|dJ24O22.2 long intergenic non-protein coding RNA 266-3 ncRNA 13-PTNLD9-TUMOR_peak_23660 chr19 2456997 2457104 + 9.70117 NA promoter-TSS (NM_032737) promoter-TSS (NM_032737) -84 NM_032737 84823 Hs.538286 NM_032737 HPRD:01037 LMNB2 LAMB2|LMN2 lamin B2 protein-coding 13-PTNLD9-TUMOR_peak_47380 chr7 44896679 44896821 + 9.70117 NA Intergenic LTR50|LTR|ERVL -9025 NM_201516 94239 Hs.488189 NM_012412 HPRD:13623 H2AFV H2A.Z-2|H2AV H2A histone family, member V protein-coding 13-PTNLD9-TUMOR_peak_21201 chr17 43201511 43201655 + 9.70117 NA intron (NM_133373, intron 1 of 14) intron (NM_133373, intron 1 of 14) 8317 NM_133373 113026 Hs.380094 NM_133373 HPRD:07146 PLCD3 PLC-delta-3 phospholipase C, delta 3 protein-coding 13-PTNLD9-TUMOR_peak_26125 chr2 11219311 11219502 + 9.70117 NA Intergenic Intergenic 52896 NR_040080 285150 Hs.329841 NM_182586 HPRD:08158 FLJ33534 - uncharacterized LOC285150 ncRNA 13-PTNLD9-TUMOR_peak_27301 chr2 74426069 74426416 + 9.69357 NA intron (NM_006636, intron 1 of 7) CpG 552 NM_006636 10797 Hs.469030 NM_006636 MTHFD2 NMDMC methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase protein-coding 13-PTNLD9-TUMOR_peak_36023 chr3 134385457 134385670 + 9.69357 NA Intergenic Intergenic -15699 NM_178554 339855 Hs.146730 NM_178554 KY - kyphoscoliosis peptidase protein-coding 13-PTNLD9-TUMOR_peak_31170 chr20 43882039 43882169 + 9.69357 NA intron (NM_003064, intron 2 of 3) intron (NM_003064, intron 2 of 3) 1101 NM_003064 6590 Hs.517070 NM_003064 HPRD:00121 SLPI ALK1|ALP|BLPI|HUSI|HUSI-I|MPI|WAP4|WFDC4 secretory leukocyte peptidase inhibitor protein-coding 13-PTNLD9-TUMOR_peak_50978 chr8 56013644 56014259 + 9.69357 NA Intergenic CpG -1066 NM_052898 114786 Hs.130197 NM_052898 XKR4 XRG4 XK, Kell blood group complex subunit-related family, member 4 protein-coding 13-PTNLD9-TUMOR_peak_28079 chr2 112463375 112463701 + 9.69357 NA Intergenic Intergenic 178203 NM_022662 64682 Hs.436527 NM_022662 HPRD:09769 ANAPC1 APC1|MCPR|TSG24 anaphase promoting complex subunit 1 protein-coding 13-PTNLD9-TUMOR_peak_52483 chr8 145050873 145051482 + 9.69357 NA promoter-TSS (NM_000445) promoter-TSS (NM_000445) -264 NM_000445 5339 Hs.434248 NM_000445 HPRD:03180 PLEC EBS1|EBSO|HD1|LGMD2Q|PCN|PLEC1|PLEC1b|PLTN plectin protein-coding 13-PTNLD9-TUMOR_peak_13644 chr12 104674591 104674809 + 9.69251 NA intron (NM_001093771, intron 3 of 16) MLT2D|LTR|ERVL -5760 NM_182742 7296 Hs.654922 NM_003330 HPRD:03068 TXNRD1 GRIM-12|TR|TR1|TRXR1|TXNR thioredoxin reductase 1 protein-coding 13-PTNLD9-TUMOR_peak_54340 chr9 110151988 110152331 + 9.69251 NA Intergenic C-rich|Low_complexity|Low_complexity 76707 NR_121581 101928720 Hs.125496 NR_121581 LINC01509 - long intergenic non-protein coding RNA 1509 ncRNA 13-PTNLD9-TUMOR_peak_30575 chr20 20760908 20761385 + 9.69251 NA Intergenic Intergenic -67880 NM_020343 57186 Hs.472285 NM_020343 ENSG00000188559 RALGAPA2 AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220 Ral GTPase activating protein, alpha subunit 2 (catalytic) protein-coding 13-PTNLD9-TUMOR_peak_13077 chr12 59313755 59314124 + 9.69251 NA promoter-TSS (NM_001136051) promoter-TSS (NM_001136051) 380 NM_153377 121227 Hs.253736 NM_153377 HPRD:08317 LRIG3 LIG3 leucine-rich repeats and immunoglobulin-like domains 3 protein-coding 13-PTNLD9-TUMOR_peak_23639 chr19 1876161 1876296 + 9.69251 NA TTS (NM_031213) TTS (NM_031213) 9290 NM_001130111 81926 Hs.465542 NM_031213 HPRD:07475 ABHD17A C19orf27|FAM108A1 abhydrolase domain containing 17A protein-coding 13-PTNLD9-TUMOR_peak_9 chr1 320374 320570 + 9.68486 NA Intergenic Intergenic -3420 NR_028325 100132062 Hs.722350 NR_028325 LOC100132062 - uncharacterized LOC100132062 ncRNA 13-PTNLD9-TUMOR_peak_56638 chrX 152064409 152064566 + 9.67763 NA Intergenic Intergenic -18499 NM_001178106 7739 Hs.16622 NM_007150 HPRD:02306 ZNF185 - zinc finger protein 185 (LIM domain) protein-coding 13-PTNLD9-TUMOR_peak_30890 chr20 34357081 34357398 + 9.67689 NA Intergenic Intergenic -2684 NM_016436 51230 Hs.517044 NM_016436 HPRD:08514 PHF20 C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP PHD finger protein 20 protein-coding 13-PTNLD9-TUMOR_peak_34756 chr3 57945542 57945968 + 9.67689 NA Intergenic Intergenic -48372 NM_001457 2317 Hs.476448 NM_001457 HPRD:04543 FLNB ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP filamin B, beta protein-coding 13-PTNLD9-TUMOR_peak_3216 chr1 144027655 144027802 + 9.67193 NA Intergenic Intergenic -114568 NM_001287385 554282 NM_001287385 FAM72C - family with sequence similarity 72, member C protein-coding 13-PTNLD9-TUMOR_peak_5410 chr1 219716338 219716490 + 9.67037 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -330205 NR_002753 26828 NR_002753 ENSG00000199377 RNU5F-1 RNU5F|U5F RNA, U5F small nuclear 1 snRNA 13-PTNLD9-TUMOR_peak_35592 chr3 123371333 123371514 + 9.67037 NA intron (NM_053025, intron 24 of 33) intron (NM_053025, intron 24 of 33) -31893 NM_053032 4638 Hs.477375 NM_005965 HPRD:02952 MYLK AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK myosin light chain kinase protein-coding 13-PTNLD9-TUMOR_peak_29715 chr2 210248017 210248215 + 9.67037 NA Intergenic Intergenic -40655 NM_001039538 4133 Hs.368281 NM_002374 HPRD:01140 MAP2 MAP2A|MAP2B|MAP2C microtubule-associated protein 2 protein-coding 13-PTNLD9-TUMOR_peak_34418 chr3 45635571 45635726 + 9.67037 NA promoter-TSS (NM_014240) promoter-TSS (NM_014240) -675 NM_014240 8994 Hs.193370 NM_014240 LIMD1 - LIM domains containing 1 protein-coding 13-PTNLD9-TUMOR_peak_16557 chr14 100003863 100004003 + 9.67037 NA intron (NM_001144995, intron 1 of 5) intron (NM_001144995, intron 1 of 5) 56194 NM_001099402 8812 Hs.510409 NM_003858 CCNK CPR4 cyclin K protein-coding 13-PTNLD9-TUMOR_peak_34871 chr3 66139160 66139474 + 9.67037 NA intron (NM_173471, intron 1 of 10) intron (NM_173471, intron 1 of 10) 20032 NM_173471 115286 Hs.379386 NM_173471 HPRD:15357 SLC25A26 SAMC solute carrier family 25 (S-adenosylmethionine carrier), member 26 protein-coding 13-PTNLD9-TUMOR_peak_50650 chr8 38326102 38326267 + 9.67037 NA promoter-TSS (NM_001174065) promoter-TSS (NM_001174065) 168 NM_001174063 2260 Hs.264887 NM_015850 HPRD:00634 FGFR1 BFGFR|CD331|CEK|FGFBR|FGFR-1|FLG|FLT-2|FLT2|HBGFR|HH2|HRTFDS|KAL2|N-SAM|OGD|bFGF-R-1 fibroblast growth factor receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_48826 chr7 111085788 111085970 + 9.67037 NA intron (NM_032549, intron 3 of 5) L1PA2|LINE|L1 116468 NM_032549 83943 Hs.655722 NM_032549 HPRD:07297 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_55039 chr9 139466533 139466812 + 9.67037 NA Intergenic Intergenic 24378 NR_121577 101928483 Hs.170035 NR_121577 MIR4674HG - MIR4674 host gene (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_18779 chr16 23386140 23386515 + 9.67037 NA intron (NM_000336, intron 7 of 12) MIRb|SINE|MIR 72736 NM_000336 6338 Hs.414614 NM_000336 HPRD:02861 SCNN1B BESC1|ENaCb|ENaCbeta|SCNEB sodium channel, non-voltage-gated 1, beta subunit protein-coding 13-PTNLD9-TUMOR_peak_45965 chr6 117803510 117804133 + 9.67037 NA promoter-TSS (NM_173674) promoter-TSS (NM_173674) 1 NM_173674 285761 Hs.658304 NM_173674 HPRD:16784 DCBLD1 dJ94G16.1 discoidin, CUB and LCCL domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_51773 chr8 121881130 121881284 + 9.66965 NA Intergenic MER57A1|LTR|ERV1 -56898 NM_021021 6641 Hs.46701 NM_021021 HPRD:02490 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1) protein-coding 13-PTNLD9-TUMOR_peak_44129 chr6 24522794 24522913 + 9.66965 NA intron (NM_170740, intron 7 of 10) intron (NM_170740, intron 7 of 10) 27656 NM_170740 7915 Hs.371723 NM_001080 HPRD:08361 ALDH5A1 SSADH|SSDH aldehyde dehydrogenase 5 family, member A1 protein-coding 13-PTNLD9-TUMOR_peak_46886 chr7 10702687 10702900 + 9.66965 NA Intergenic Intergenic 277020 NM_002489 4697 Hs.50098 NM_002489 HPRD:04831 NDUFA4 CI-9k|CI-MLRQ|MLRQ NDUFA4, mitochondrial complex associated protein-coding 13-PTNLD9-TUMOR_peak_32660 chr22 18050988 18051174 + 9.66965 NA intron (NM_031481, intron 2 of 10) L2c|LINE|L2 7898 NM_031481 83733 Hs.282982 NM_031481 HPRD:15355 SLC25A18 GC2 solute carrier family 25 (glutamate carrier), member 18 protein-coding 13-PTNLD9-TUMOR_peak_26477 chr2 30101882 30102019 + 9.66965 NA intron (NM_004304, intron 1 of 28) intron (NM_004304, intron 1 of 28) 42527 NM_004304 238 Hs.654469 NM_004304 HPRD:00104 ALK CD246|NBLST3 anaplastic lymphoma receptor tyrosine kinase protein-coding 13-PTNLD9-TUMOR_peak_2407 chr1 89740179 89740441 + 9.66965 NA Intergenic Intergenic -1766 NM_001134486 115362 Hs.513726 NM_052942 HPRD:13571 GBP5 GBP-5 guanylate binding protein 5 protein-coding 13-PTNLD9-TUMOR_peak_20799 chr17 28443732 28443942 + 9.66965 NA promoter-TSS (NM_001261467) promoter-TSS (NM_001261467) 12 NM_032141 84081 Hs.462663 NM_032141 HPRD:08536 NSRP1 CCDC55|HSPC095|NSrp70 nuclear speckle splicing regulatory protein 1 protein-coding 13-PTNLD9-TUMOR_peak_52652 chr9 3906863 3907094 + 9.66965 NA intron (NM_001042413, intron 6 of 10) intron (NM_001042413, intron 6 of 10) 8332 NR_026663 84850 Hs.676113 NM_032764 ENSG00000237009 GLIS3-AS1 C9orf70 GLIS3 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_31641 chr20 55353894 55354225 + 9.66965 NA Intergenic Intergenic 149701 NM_003222 7022 Hs.473152 NM_003222 HPRD:03361 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma) protein-coding 13-PTNLD9-TUMOR_peak_44702 chr6 33668359 33668485 + 9.66965 NA intron (NM_032340, intron 2 of 3) intron (NM_032340, intron 2 of 3) 11106 NM_032340 84300 Hs.745020 NM_032340 HPRD:12847 UQCC2 C6orf125|Cbp6|M19|MNF1|bA6B20.2 ubiquinol-cytochrome c reductase complex assembly factor 2 protein-coding 13-PTNLD9-TUMOR_peak_5517 chr1 223603264 223603443 + 9.66965 NA Intergenic Intergenic 36638 NM_152610 164127 Hs.192090 NM_152610 HPRD:08761 CCDC185 C1orf65 coiled-coil domain containing 185 protein-coding 13-PTNLD9-TUMOR_peak_20730 chr17 25711460 25711704 + 9.66965 NA Intergenic Intergenic -33449 NR_033892 440419 Hs.385755 NR_033892 ENSG00000266433 TBC1D3P5 - TBC1 domain family, member 3 pseudogene 5 pseudo 13-PTNLD9-TUMOR_peak_42547 chr5 148185047 148185305 + 9.66965 NA Intergenic MER102b|DNA|hAT-Charlie -20980 NM_000024 154 Hs.2551 NM_000024 HPRD:00187 ADRB2 ADRB2R|ADRBR|B2AR|BAR|BETA2AR adrenoceptor beta 2, surface protein-coding 13-PTNLD9-TUMOR_peak_26225 chr2 18229211 18229537 + 9.66965 NA Intergenic MIRc|SINE|MIR 169450 NM_002252 3790 Hs.414489 NM_002252 HPRD:04865 KCNS3 KV9.3 potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3 protein-coding 13-PTNLD9-TUMOR_peak_36400 chr3 150674289 150674414 + 9.66965 NA intron (NR_046380, intron 1 of 4) intron (NR_046380, intron 1 of 4) -12328 NM_052995 7401 Hs.745448 NM_052995 HPRD:05905 CLRN1 RP61|USH3|USH3A clarin 1 protein-coding 13-PTNLD9-TUMOR_peak_31477 chr20 49584354 49584474 + 9.66965 NA Intergenic Intergenic 9063 NM_014484 27304 Hs.159410 NM_014484 HPRD:10092 MOCS3 UBA4 molybdenum cofactor synthesis 3 protein-coding 13-PTNLD9-TUMOR_peak_21326 chr17 45967413 45967526 + 9.66965 NA Intergenic Intergenic -6047 NM_003110 6668 Hs.514276 NM_003110 HPRD:03481 SP2 - Sp2 transcription factor protein-coding 13-PTNLD9-TUMOR_peak_18846 chr16 27256656 27256842 + 9.66965 NA intron (NM_145080, intron 2 of 7) intron (NM_145080, intron 2 of 7) -22777 NR_037184 400512 Hs.434412 NR_037184 ENSG00000245888 FLJ21408 - uncharacterized LOC400512 ncRNA 13-PTNLD9-TUMOR_peak_26802 chr2 46219318 46219808 + 9.66965 NA intron (NM_005400, intron 6 of 14) intron (NM_005400, intron 6 of 14) -304978 NM_001430 2034 Hs.468410 NM_001430 HPRD:06787 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 13-PTNLD9-TUMOR_peak_29271 chr2 182903465 182903572 + 9.66965 NA intron (NM_001080545, intron 2 of 4) L3|LINE|CR1 52967 NM_001261425 151242 Hs.10941 NM_001080545 ENSG00000150722 PPP1R1C IPP5 protein phosphatase 1, regulatory (inhibitor) subunit 1C protein-coding 13-PTNLD9-TUMOR_peak_1848 chr1 54764814 54765005 + 9.66965 NA intron (NM_145716, intron 4 of 17) intron (NM_145716, intron 4 of 17) 62793 NR_103541 619518 Hs.591438 NM_001034847 SSBP3-AS1 C1orf191|MST128 SSBP3 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_39110 chr4 113832546 113832682 + 9.66965 NA intron (NM_001127493, intron 2 of 46) AluY|SINE|Alu 93375 NM_001127493 287 Hs.620557 NM_001148 HPRD:00110 ANK2 ANK-2|LQT4|brank-2 ankyrin 2, neuronal protein-coding 13-PTNLD9-TUMOR_peak_4653 chr1 182038189 182038317 + 9.66965 NA Intergenic Intergenic -7406 NM_001009992 127665 Hs.684328 NM_001009992 HPRD:18361 ZNF648 - zinc finger protein 648 protein-coding 13-PTNLD9-TUMOR_peak_50169 chr8 17663445 17663618 + 9.66319 NA Intergenic Intergenic -5105 NM_001001925 57509 Hs.7946 NM_020749 HPRD:11376 MTUS1 ATBP|ATIP|ICIS|MP44|MTSG1 microtubule associated tumor suppressor 1 protein-coding 13-PTNLD9-TUMOR_peak_49362 chr7 139761993 139762136 + 9.66246 NA intron (NM_022750, intron 1 of 11) intron (NM_022750, intron 1 of 11) 1457 NM_022750 64761 Hs.12646 NM_022750 HPRD:15696 PARP12 ARTD12|MST109|MSTP109|ZC3H1|ZC3HDC1 poly (ADP-ribose) polymerase family, member 12 protein-coding 13-PTNLD9-TUMOR_peak_28214 chr2 119639255 119639354 + 9.66028 NA Intergenic Intergenic -33545 NM_001426 2019 Hs.271977 NM_001426 HPRD:08835 EN1 - engrailed homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_21708 chr17 60771426 60771657 + 9.66028 NA TTS (NM_006039) TTS (NM_006039) -27317 NR_036146 100422923 NR_036146 MIR548W - microRNA 548w ncRNA 13-PTNLD9-TUMOR_peak_36300 chr3 147110046 147110272 + 9.66028 NA promoter-TSS (NR_033119) promoter-TSS (NR_033119) 58 NR_033119 84107 Hs.415766 NM_032153 HPRD:12340 ZIC4 - Zic family member 4 protein-coding 13-PTNLD9-TUMOR_peak_56605 chrX 149737346 149737491 + 9.66028 NA intron (NM_000252, intron 1 of 14) CpG 371 NM_000252 4534 Hs.655056 NM_000252 HPRD:02331 MTM1 CNM|MTMX|XLMTM myotubularin 1 protein-coding 13-PTNLD9-TUMOR_peak_31439 chr20 49055605 49055799 + 9.65589 NA Intergenic Intergenic -71156 NM_002827 5770 Hs.417549 NM_002827 HPRD:01477 PTPN1 PTP1B protein tyrosine phosphatase, non-receptor type 1 protein-coding 13-PTNLD9-TUMOR_peak_35661 chr3 124827062 124827388 + 9.65589 NA intron (NM_024628, intron 9 of 13) AluJr|SINE|Alu 43171 NR_049815 100847039 NR_049815 MIR5092 - microRNA 5092 ncRNA 13-PTNLD9-TUMOR_peak_39485 chr4 142141962 142142411 + 9.65589 NA 5' UTR (NM_001292002, exon 1 of 9) 5' UTR (NM_001292002, exon 1 of 9) 145 NM_014487 27309 Hs.120766 NM_014487 HPRD:15775 ZNF330 HSA6591|NOA36 zinc finger protein 330 protein-coding 13-PTNLD9-TUMOR_peak_21941 chr17 72565654 72565916 + 9.65589 NA Intergenic Intergenic -15272 NM_152460 146723 Hs.350775 NM_152460 HPRD:08112 C17orf77 - chromosome 17 open reading frame 77 protein-coding 13-PTNLD9-TUMOR_peak_11329 chr11 116969653 116969994 + 9.65589 NA promoter-TSS (NM_001281749) promoter-TSS (NM_001281749) -692 NM_001281748 23387 Hs.167451 NM_025164 HPRD:11121 SIK3 QSK|SIK-3 SIK family kinase 3 protein-coding 13-PTNLD9-TUMOR_peak_27411 chr2 85512722 85512830 + 9.65589 NA intron (NM_031283, intron 4 of 11) intron (NM_031283, intron 4 of 11) 42643 NM_001206840 10618 Hs.593382 NM_006464 HPRD:04343 TGOLN2 TGN38|TGN46|TGN48|TGN51|TTGN2 trans-golgi network protein 2 protein-coding 13-PTNLD9-TUMOR_peak_5919 chr1 234793044 234793163 + 9.65589 NA Intergenic MIR3|SINE|MIR 28046 NR_033927 100302691 Hs.209162 NR_033927 ENSG00000224939 LINC00184 HANC|NCRNA00184 long intergenic non-protein coding RNA 184 ncRNA 13-PTNLD9-TUMOR_peak_40190 chr5 1385961 1386131 + 9.65589 NA Intergenic CpG -41044 NM_030782 81037 Hs.444673 NM_030782 HPRD:07480 CLPTM1L CRR9 CLPTM1-like protein-coding 13-PTNLD9-TUMOR_peak_27935 chr2 107364111 107364213 + 9.65095 NA Intergenic ERVL-E-int|LTR|ERVL 138448 NM_001142351 84620 Hs.98265 NM_032528 HPRD:12237 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactosamide alpha-2,6-sialyltranferase 2 protein-coding 13-PTNLD9-TUMOR_peak_21791 chr17 63060916 63061069 + 9.65095 NA Intergenic AluJo|SINE|Alu -8072 NM_006572 10672 Hs.515018 NM_006572 HPRD:05100 GNA13 G13 guanine nucleotide binding protein (G protein), alpha 13 protein-coding 13-PTNLD9-TUMOR_peak_46058 chr6 131949213 131949519 + 9.65095 NA promoter-TSS (NM_001270521) promoter-TSS (NM_001270521) 13 NM_004830 9439 Hs.29679 NM_004830 HPRD:05436 MED23 ARC130|CRSP130|CRSP133|CRSP3|DRIP130|MRT18|SUR-2|SUR2 mediator complex subunit 23 protein-coding 13-PTNLD9-TUMOR_peak_12304 chr12 22563539 22563775 + 9.65095 NA Intergenic Intergenic -76009 NM_003034 6489 Hs.408614 NM_003034 HPRD:03078 ST8SIA1 GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_15348 chr14 24196910 24197063 + 9.65095 NA Intergenic MIRc|SINE|MIR 91413 NM_005794 10202 Hs.272499 NM_005794 HPRD:07483 DHRS2 HEP27|SDR25C1 dehydrogenase/reductase (SDR family) member 2 protein-coding 13-PTNLD9-TUMOR_peak_34225 chr3 33953514 33953677 + 9.65095 NA Intergenic Intergenic 113532 NM_001162429 10015 Hs.475896 NM_013374 HPRD:06425 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 13-PTNLD9-TUMOR_peak_44523 chr6 31213915 31214033 + 9.65095 NA Intergenic ERVL-B4-int|LTR|ERVL 25939 NM_001243042 3107 Hs.77961 NM_002117 HPRD:00829 HLA-C D6S204|HLA-JY3|HLC-C|PSORS1 major histocompatibility complex, class I, C protein-coding 13-PTNLD9-TUMOR_peak_28935 chr2 163344388 163344551 + 9.65095 NA intron (NM_033272, intron 6 of 15) intron (NM_033272, intron 6 of 15) 143886 NM_012198 25801 Hs.377894 NM_012198 GCA GCL grancalcin, EF-hand calcium binding protein protein-coding 13-PTNLD9-TUMOR_peak_23040 chr18 43451728 43451953 + 9.65095 NA intron (NM_020964, intron 35 of 43) L1MA7|LINE|L1 46295 NM_213602 284266 Hs.287692 NM_213602 HPRD:13011 SIGLEC15 CD33L3|HsT1361|SIGLEC-15 sialic acid binding Ig-like lectin 15 protein-coding 13-PTNLD9-TUMOR_peak_9059 chr11 11413403 11413589 + 9.65095 NA intron (NM_198516, intron 3 of 10) intron (NM_198516, intron 3 of 10) -38592 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2, alpha 3 polypeptide protein-coding 13-PTNLD9-TUMOR_peak_43351 chr5 180542209 180542581 + 9.65095 NA Intergenic CpG 9909 NM_001258283 26693 Hs.742585 NM_001258283 ENSG00000185372 OR2V1 OR2V1P|OST265 olfactory receptor, family 2, subfamily V, member 1 protein-coding 13-PTNLD9-TUMOR_peak_43724 chr6 9516526 9516730 + 9.65095 NA Intergenic Intergenic 864186 NR_004855 728655 Hs.214343 NR_004855 ENSG00000251164 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 13-PTNLD9-TUMOR_peak_34708 chr3 54988085 54988313 + 9.65095 NA intron (NM_018398, intron 27 of 37) intron (NM_018398, intron 27 of 37) -26127 NM_020678 57408 Hs.591668 NM_020678 HPRD:13718 LRTM1 - leucine-rich repeats and transmembrane domains 1 protein-coding 13-PTNLD9-TUMOR_peak_30490 chr20 16903560 16903711 + 9.65095 NA Intergenic Intergenic 174637 NM_020157 56914 Hs.41119 NM_020157 HPRD:07300 OTOR FDP|MIAL1 otoraplin protein-coding 13-PTNLD9-TUMOR_peak_35759 chr3 126892040 126892147 + 9.65095 NA Intergenic Intergenic -19881 NM_001007534 285311 Hs.591284 NM_001007534 HPRD:16949 C3orf56 - chromosome 3 open reading frame 56 protein-coding 13-PTNLD9-TUMOR_peak_50314 chr8 22722341 22722752 + 9.65095 NA intron (NM_144962, intron 3 of 6) CpG -12939 NR_125433 101929237 Hs.677838 NR_125433 ENSG00000248738 LOC101929237 - uncharacterized LOC101929237 ncRNA 13-PTNLD9-TUMOR_peak_40916 chr5 55761720 55761850 + 9.65095 NA intron (NR_104664, intron 2 of 4) (TATG)n|Simple_repeat|Simple_repeat 15811 NR_104664 102467147 Hs.650177 NR_104664 LOC102467147 - uncharacterized LOC102467147 ncRNA 13-PTNLD9-TUMOR_peak_28891 chr2 161165518 161165704 + 9.65095 NA intron (NM_016836, intron 4 of 13) intron (NM_016836, intron 4 of 13) -37205 NR_103775 100505984 Hs.729532 NR_103775 ENSG00000115221 LOC100505984 - uncharacterized LOC100505984 ncRNA 13-PTNLD9-TUMOR_peak_7654 chr10 72455497 72455646 + 9.65095 NA intron (NM_080722, intron 2 of 21) L2|LINE|L2 23012 NM_080722 140766 Hs.352156 NM_080722 HPRD:06329 ADAMTS14 - ADAM metallopeptidase with thrombospondin type 1 motif, 14 protein-coding 13-PTNLD9-TUMOR_peak_21170 chr17 42494978 42495217 + 9.65095 NA intron (NM_001002909, intron 6 of 7) MER102c|DNA|hAT-Charlie -28224 NM_000419 3674 Hs.411312 NM_000419 HPRD:06377 ITGA2B BDPLT16|BDPLT2|CD41|CD41B|GP2B|GPIIb|GT|GTA|HPA3|PPP1R93 integrin, alpha 2b (platelet glycoprotein IIb of IIb/IIIa complex, antigen CD41) protein-coding 13-PTNLD9-TUMOR_peak_33880 chr3 14283356 14283479 + 9.65095 NA Intergenic AluJo|SINE|Alu 63189 NM_014463 27258 Hs.111632 NM_014463 LSM3 SMX4|USS2|YLR438C LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_33801 chr3 12604827 12605026 + 9.65095 NA intron (NM_001271707, intron 1 of 6) intron (NM_001271707, intron 1 of 6) 6413 NM_014160 23609 Hs.591666 NM_014160 HPRD:09761 MKRN2 RNF62 makorin ring finger protein 2 protein-coding 13-PTNLD9-TUMOR_peak_13418 chr12 83079613 83079751 + 9.64671 NA Intergenic Intergenic -1252 NM_152588 160335 Hs.577775 NM_152588 HPRD:13230 TMTC2 IBDBP1 transmembrane and tetratricopeptide repeat containing 2 protein-coding 13-PTNLD9-TUMOR_peak_32751 chr22 19869439 19869733 + 9.64671 NA intron (NM_006440, intron 12 of 17) MLT1C|LTR|ERVL-MaLR -27124 NM_053004 54584 Hs.105642 NM_053004 HPRD:13591 GNB1L DGCRK3|GY2|WDR14|WDVCF guanine nucleotide binding protein (G protein), beta polypeptide 1-like protein-coding 13-PTNLD9-TUMOR_peak_23664 chr19 2495334 2495519 + 9.64671 NA Intergenic Intergenic 19303 NM_015675 4616 Hs.110571 NM_015675 HPRD:05382 GADD45B GADD45BETA|MYD118 growth arrest and DNA-damage-inducible, beta protein-coding 13-PTNLD9-TUMOR_peak_18921 chr16 29280541 29280795 + 9.64545 NA Intergenic Intergenic -32940 NR_002939 440352 Hs.658149 NR_002939 SNX29P2 RUNDC2C sorting nexin 29 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_29320 chr2 188988645 188988786 + 9.64526 NA Intergenic L1PA3|LINE|L1 -167681 NM_001252669 51454 Hs.470887 NM_016315 GULP1 CED-6|CED6|GULP GULP, engulfment adaptor PTB domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_16100 chr14 68831591 68831875 + 9.64526 NA intron (NM_133510, intron 8 of 10) intron (NM_133510, intron 8 of 10) 428898 NM_004926 677 Hs.85155 NM_004926 HPRD:03041 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein-like 1 protein-coding 13-PTNLD9-TUMOR_peak_48994 chr7 128476352 128476510 + 9.63841 NA intron (NM_001127487, intron 2 of 46) intron (NM_001127487, intron 2 of 46) 5948 NM_001127487 2318 Hs.58414 NM_001458 HPRD:00018 FLNC ABP-280|ABP280A|ABPA|ABPL|FLN2|MFM5|MPD4 filamin C, gamma protein-coding 13-PTNLD9-TUMOR_peak_10438 chr11 69066022 69066272 + 9.63072 NA Intergenic Intergenic 4542 NM_001300924 26579 Hs.523848 NM_138768 HPRD:16130 MYEOV OCIM myeloma overexpressed protein-coding 13-PTNLD9-TUMOR_peak_3500 chr1 149605701 149606163 + 9.63072 NA promoter-TSS (NR_125392) promoter-TSS (NR_125392) 15 NR_125392 101954268 NR_125392 RNVU1-20 RNU1-110|vU1.20 RNA, variant U1 small nuclear 20 snRNA 13-PTNLD9-TUMOR_peak_28359 chr2 127783167 127783351 + 9.63033 NA Intergenic CpG 81644 NM_139343 274 Hs.193163 NM_004305 HPRD:03150 BIN1 AMPH2|AMPHL|SH3P9 bridging integrator 1 protein-coding 13-PTNLD9-TUMOR_peak_40052 chr4 187606099 187606340 + 9.63033 NA intron (NM_005245, intron 2 of 26) intron (NM_005245, intron 2 of 26) 38768 NM_005245 2195 Hs.481371 NM_005245 HPRD:02986 FAT1 CDHF7|CDHR8|FAT|ME5|hFat1 FAT atypical cadherin 1 protein-coding 13-PTNLD9-TUMOR_peak_978 chr1 32421713 32421845 + 9.63033 NA Intergenic Intergenic -17791 NM_080391 8073 Hs.470477 NM_003479 HPRD:03348 PTP4A2 HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b protein tyrosine phosphatase type IVA, member 2 protein-coding 13-PTNLD9-TUMOR_peak_45291 chr6 52516935 52517054 + 9.63033 NA Intergenic L1MD2|LINE|L1 -12205 NR_024403 730101 Hs.7921 NR_024403 ENSG00000216775 LOC730101 - uncharacterized LOC730101 ncRNA 13-PTNLD9-TUMOR_peak_55560 chrX 14047684 14047884 + 9.63033 NA intron (NM_017856, intron 1 of 4) CpG 251 NM_017856 54960 Hs.592237 NM_017856 HPRD:06533 GEMIN8 FAM51A1 gem (nuclear organelle) associated protein 8 protein-coding 13-PTNLD9-TUMOR_peak_30767 chr20 31034736 31034844 + 9.63033 NA 3' UTR (NM_080616, exon 8 of 8) 3' UTR (NM_080616, exon 8 of 8) 36595 NM_080616 140688 Hs.516978 NM_080616 HPRD:10728 NOL4L C20orf112|C20orf113|dJ1184F4.2|dJ1184F4.4 nucleolar protein 4-like protein-coding 13-PTNLD9-TUMOR_peak_34473 chr3 47843765 47843985 + 9.63033 NA promoter-TSS (NM_138615) promoter-TSS (NM_138615) -524 NR_075079 22907 Hs.517948 NM_014966 HPRD:13142 DHX30 DDX30|RETCOR DEAH (Asp-Glu-Ala-His) box helicase 30 protein-coding 13-PTNLD9-TUMOR_peak_38929 chr4 99064187 99064312 + 9.63033 NA exon (NM_174952, exon 1 of 11) exon (NM_174952, exon 1 of 11) 142 NM_174952 285555 Hs.680226 NM_174952 HPRD:14650 STPG2 C4orf37 sperm-tail PG-rich repeat containing 2 protein-coding 13-PTNLD9-TUMOR_peak_42588 chr5 149012139 149012510 + 9.63033 NA 3' UTR (NM_001001669, exon 13 of 13) 3' UTR (NM_001001669, exon 13 of 13) 51189 NM_001001669 389337 Hs.256206 NM_001001669 HPRD:13454 ARHGEF37 - Rho guanine nucleotide exchange factor (GEF) 37 protein-coding 13-PTNLD9-TUMOR_peak_23487 chr18 74452497 74452624 + 9.63033 NA Intergenic Intergenic 50574 NR_122073 400661 Hs.514963 NR_122073 LOC400661 - uncharacterized LOC400661 ncRNA 13-PTNLD9-TUMOR_peak_40428 chr5 16815623 16815901 + 9.63033 NA intron (NM_012334, intron 3 of 40) intron (NM_012334, intron 3 of 40) 120623 NM_012334 4651 Hs.481720 NM_012334 HPRD:03283 MYO10 - myosin X protein-coding 13-PTNLD9-TUMOR_peak_42026 chr5 131723409 131723715 + 9.62704 NA intron (NM_003060, intron 5 of 9) intron (NM_003060, intron 5 of 9) -17954 NR_110997 553103 Hs.570908 NR_037898 ENSG00000233006 LOC553103 - uncharacterized LOC553103 ncRNA 13-PTNLD9-TUMOR_peak_1694 chr1 48194177 48194283 + 9.62704 NA Intergenic MER65-int|LTR|ERV1 268332 NM_001194986 388630 Hs.61504 NM_001194986 ENSG00000269113 TRABD2B TIKI2 TraB domain containing 2B protein-coding 13-PTNLD9-TUMOR_peak_36366 chr3 149863539 149863780 + 9.62704 NA Intergenic Intergenic -92647 NR_110168 101927992 Hs.534682 NR_110167 ENSG00000244541 LINC01213 - long intergenic non-protein coding RNA 1213 ncRNA 13-PTNLD9-TUMOR_peak_12687 chr12 48499693 48500202 + 9.62521 NA promoter-TSS (NR_051992) promoter-TSS (NR_051992) 144 NM_001267594 29843 Hs.371957 NM_014554 HPRD:07153 SENP1 SuPr-2 SUMO1/sentrin specific peptidase 1 protein-coding 13-PTNLD9-TUMOR_peak_37120 chr3 187526818 187526929 + 9.62521 NA Intergenic Intergenic -63360 NM_001706 604 Hs.478588 NM_001706 HPRD:00180 BCL6 BCL5|BCL6A|LAZ3|ZBTB27|ZNF51 B-cell CLL/lymphoma 6 protein-coding 13-PTNLD9-TUMOR_peak_31175 chr20 43922208 43922632 + 9.62521 NA exon (NM_030592, exon 8 of 8) exon (NM_030592, exon 8 of 8) -13063 NM_001281448 11317 Hs.248217 NM_014276 RBPJL RBPSUHL|SUHL recombination signal binding protein for immunoglobulin kappa J region-like protein-coding 13-PTNLD9-TUMOR_peak_32658 chr22 17724432 17724609 + 9.62521 NA Intergenic Intergenic -21776 NM_001282227 51816 Hs.170310 NM_017424 HPRD:10462 CECR1 ADA2|ADGF|IDGFL|PAN|SNEDS cat eye syndrome chromosome region, candidate 1 protein-coding 13-PTNLD9-TUMOR_peak_17507 chr15 68220226 68220354 + 9.62521 NA Intergenic Intergenic -87907 NR_125730 103625684 NR_125730 RNU6-2 U6-2 RNA, U6 small nuclear 2 snRNA 13-PTNLD9-TUMOR_peak_17123 chr15 42125136 42125380 + 9.62521 NA intron (NM_005090, intron 1 of 24) L2a|LINE|L2 4975 NM_001198588 8681 Hs.198161 NM_005090 HPRD:07306 JMJD7-PLA2G4B HsT16992|cPLA2-beta JMJD7-PLA2G4B readthrough protein-coding 13-PTNLD9-TUMOR_peak_40921 chr5 55830014 55830139 + 9.62521 NA intron (NM_001287053, intron 3 of 5) intron (NM_001287053, intron 3 of 5) -52480 NR_104664 102467147 Hs.650177 NR_104664 LOC102467147 - uncharacterized LOC102467147 ncRNA 13-PTNLD9-TUMOR_peak_4218 chr1 164561189 164561296 + 9.62521 NA intron (NM_001204961, intron 2 of 7) intron (NM_001204961, intron 2 of 7) 32645 NM_002585 5087 Hs.557097 NM_002585 HPRD:08889 PBX1 - pre-B-cell leukemia homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_24689 chr19 33678145 33678271 + 9.62521 NA Intergenic Intergenic -7391 NM_002333 4037 Hs.515340 NM_002333 LRP3 - low density lipoprotein receptor-related protein 3 protein-coding 13-PTNLD9-TUMOR_peak_12918 chr12 54430712 54430892 + 9.62521 NA intron (NM_014620, intron 1 of 3) intron (NM_014620, intron 1 of 3) 3068 NR_030753 693200 NR_030753 MIR615 MIRN615|hsa-mir-615 microRNA 615 ncRNA 13-PTNLD9-TUMOR_peak_330 chr1 9444906 9445220 + 9.62521 NA Intergenic Intergenic 43912 NR_104623 100506022 Hs.131775 NR_104622 LOC100506022 - uncharacterized LOC100506022 ncRNA 13-PTNLD9-TUMOR_peak_5122 chr1 204049532 204049812 + 9.62521 NA intron (NM_005686, intron 1 of 13) intron (NM_005686, intron 1 of 13) 7426 NM_005686 9580 Hs.201671 NM_005686 ENSG00000143842 SOX13 ICA12|Sox-13 SRY (sex determining region Y)-box 13 protein-coding 13-PTNLD9-TUMOR_peak_16172 chr14 70161190 70161400 + 9.62521 NA intron (NM_014734, intron 2 of 5) intron (NM_014734, intron 2 of 5) -72534 NM_001039465 6430 Hs.632326 NM_006925 ENSG00000100650 SRSF5 HRS|SFRS5|SRP40 serine/arginine-rich splicing factor 5 protein-coding 13-PTNLD9-TUMOR_peak_17250 chr15 48623792 48623983 + 9.61994 NA promoter-TSS (NM_001948) promoter-TSS (NM_001948) 266 NM_001025248 1854 Hs.527980 NM_001948 HPRD:03165 DUT dUTPase deoxyuridine triphosphatase protein-coding 13-PTNLD9-TUMOR_peak_45051 chr6 42882477 42882854 + 9.61994 NA Intergenic AluJo|SINE|Alu -1062 NM_138296 171558 Hs.169002 NM_138296 HPRD:08435 PTCRA PT-ALPHA|PTA pre T-cell antigen receptor alpha protein-coding 13-PTNLD9-TUMOR_peak_47740 chr7 65516095 65516451 + 9.61994 NA Intergenic AluJo|SINE|Alu -24503 NM_000048 435 Hs.632015 NM_000048 HPRD:01948 ASL ASAL argininosuccinate lyase protein-coding 13-PTNLD9-TUMOR_peak_7808 chr10 78920551 78920714 + 9.61994 NA intron (NM_001271519, intron 5 of 28) intron (NM_001271519, intron 5 of 28) 20043 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_17790 chr15 82635468 82635663 + 9.61702 NA exon (NM_001164465, exon 9 of 10) exon (NM_001164465, exon 9 of 10) -11789 NR_004847 100134869 Hs.735222 NR_004847 UBE2Q2P2 UBE2Q2P3|UBE2QP2 ubiquitin-conjugating enzyme E2Q family member 2 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_19072 chr16 31397165 31397319 + 9.61647 NA Intergenic AluSx1|SINE|Alu -7391 NM_005353 3681 Hs.679163 NM_005353 ENSG00000156886 ITGAD ADB2|CD11D integrin, alpha D protein-coding 13-PTNLD9-TUMOR_peak_36140 chr3 139396365 139396505 + 9.61647 NA intron (NM_178177, intron 1 of 4) CpG 450 NM_001200047 349565 Hs.208673 NM_178177 HPRD:16370 NMNAT3 PNAT-3|PNAT3 nicotinamide nucleotide adenylyltransferase 3 protein-coding 13-PTNLD9-TUMOR_peak_22104 chr17 75251069 75251405 + 9.61647 NA Intergenic Intergenic -26255 NM_001113491 10801 Hs.440932 NM_006640 HPRD:10360 SEPT9 AF17q25|MSF|MSF1|NAPB|PNUTL4|SINT1|SeptD1 septin 9 protein-coding 13-PTNLD9-TUMOR_peak_48711 chr7 104654494 104654694 + 9.60581 NA promoter-TSS (NM_018682) promoter-TSS (NM_018682) -6 NR_024586 100216545 Hs.631150 NR_024586 KMT2E-AS1 - KMT2E antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_16926 chr15 31120580 31120720 + 9.60087 NA TTS (NR_072991) TTS (NR_072991) 10411 NR_072991 390561 Hs.721293 NR_072991 HERC2P10 - hect domain and RLD 2 pseudogene 10 pseudo 13-PTNLD9-TUMOR_peak_30571 chr20 20501529 20501717 + 9.60087 NA exon (NM_020343, exon 31 of 40) exon (NM_020343, exon 31 of 40) 152858 NM_002196 3642 Hs.89584 NM_002196 HPRD:02480 INSM1 IA-1|IA1 insulinoma-associated 1 protein-coding 13-PTNLD9-TUMOR_peak_17656 chr15 74818421 74818635 + 9.60087 NA Intergenic MLT1J1|LTR|ERVL-MaLR -15020 NM_006465 10620 Hs.655532 NM_006465 HPRD:09806 ARID3B BDP|DRIL2 AT rich interactive domain 3B (BRIGHT-like) protein-coding 13-PTNLD9-TUMOR_peak_4686 chr1 183038916 183039360 + 9.60087 NA intron (NM_002293, intron 1 of 27) MIRb|SINE|MIR 46543 NM_002293 3915 Hs.609663 NM_002293 HPRD:01030 LAMC1 LAMB2 laminin, gamma 1 (formerly LAMB2) protein-coding 13-PTNLD9-TUMOR_peak_24807 chr19 36640970 36641198 + 9.60087 NA TTS (NM_001864) TTS (NM_001864) 2687 NM_001864 1346 Hs.421621 NM_001864 HPRD:00481 COX7A1 COX7A|COX7AH|COX7AM cytochrome c oxidase subunit VIIa polypeptide 1 (muscle) protein-coding 13-PTNLD9-TUMOR_peak_36406 chr3 151034648 151034775 + 9.60087 NA promoter-TSS (NM_023915) promoter-TSS (NM_023915) -75 NM_023915 53836 Hs.591292 NM_023915 HPRD:16209 GPR87 GPR95|KPG_002 G protein-coupled receptor 87 protein-coding 13-PTNLD9-TUMOR_peak_46461 chr6 161106174 161106355 + 9.60087 NA Intergenic L1PA3|LINE|L1 -16961 NM_000301 5340 Hs.143436 NM_000301 HPRD:01417 PLG - plasminogen protein-coding 13-PTNLD9-TUMOR_peak_966 chr1 32221052 32221183 + 9.60087 NA intron (NM_001294335, intron 4 of 32) intron (NM_001294335, intron 4 of 32) 3219 NR_036216 100423028 NR_036216 MIR4254 - microRNA 4254 ncRNA 13-PTNLD9-TUMOR_peak_26623 chr2 38466661 38466884 + 9.60087 NA Intergenic Intergenic 108525 NR_027252 285154 Hs.353894 NM_173652 HPRD:14592 CYP1B1-AS1 C2orf58 CYP1B1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_22446 chr18 2529270 2529462 + 9.60087 NA Intergenic Intergenic 42123 NM_022840 64863 Hs.126888 NM_022840 HPRD:14390 METTL4 HsT661 methyltransferase like 4 protein-coding 13-PTNLD9-TUMOR_peak_6525 chr10 13606057 13606275 + 9.60087 NA Intergenic AluJr|SINE|Alu -22773 NM_003675 8559 Hs.729158 NM_003675 HPRD:05407 PRPF18 PRP18|hPrp18 pre-mRNA processing factor 18 protein-coding 13-PTNLD9-TUMOR_peak_16218 chr14 72448229 72448338 + 9.60087 NA intron (NM_001204420, intron 2 of 15) L1PA3|LINE|L1 48497 NM_001204418 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP regulator of G-protein signaling 6 protein-coding 13-PTNLD9-TUMOR_peak_6405 chr10 6771087 6771313 + 9.60087 NA Intergenic Intergenic 49942 NR_108074 100652997 Hs.255086 NR_108074 LINC00706 - long intergenic non-protein coding RNA 706 ncRNA 13-PTNLD9-TUMOR_peak_12606 chr12 43679119 43679344 + 9.60087 NA Intergenic Intergenic 266493 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif, 20 protein-coding 13-PTNLD9-TUMOR_peak_16375 chr14 81734377 81734570 + 9.60087 NA 3' UTR (NM_033104, exon 6 of 6) 3' UTR (NM_033104, exon 6 of 6) -46898 NM_201595 2957 Hs.592334 NM_015859 HPRD:02748 GTF2A1 TF2A1|TFIIA|TFIIA-42|TFIIAL general transcription factor IIA, 1, 19/37kDa protein-coding 13-PTNLD9-TUMOR_peak_1995 chr1 61605255 61605396 + 9.60087 NA intron (NM_001145511, intron 2 of 10) intron (NM_001145511, intron 2 of 10) 57345 NM_001134673 4774 Hs.740757 NM_005595 HPRD:09007 NFIA CTF|NF-I/A|NF1-A|NFI-A|NFI-L nuclear factor I/A protein-coding 13-PTNLD9-TUMOR_peak_20628 chr17 19195749 19195903 + 9.60087 NA intron (NM_014964, intron 4 of 10) intron (NM_014964, intron 4 of 10) 13748 NR_048576 100874018 Hs.621672 NR_048576 ENSG00000235397 EPN2-AS1 - EPN2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_56475 chrX 129231956 129232216 + 9.60087 NA intron (NM_001127197, intron 1 of 8) intron (NM_001127197, intron 1 of 8) 12389 NM_001421 2000 Hs.271940 NM_001421 HPRD:06499 ELF4 ELFR|MEF E74-like factor 4 (ets domain transcription factor) protein-coding 13-PTNLD9-TUMOR_peak_55615 chrX 19689005 19689182 + 9.60087 NA promoter-TSS (NM_001184960) promoter-TSS (NM_001184960) 26 NM_001184960 30011 Hs.726365 NM_031892 HPRD:02301 SH3KBP1 CD2BP3|CIN85|GIG10|HSB-1|HSB1|MIG18 SH3-domain kinase binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_22292 chr17 79844193 79844430 + 9.60087 NA Intergenic Intergenic -4355 NM_001289414 51529 Hs.534456 NM_016476 HPRD:12452 ANAPC11 APC11|Apc11p anaphase promoting complex subunit 11 protein-coding 13-PTNLD9-TUMOR_peak_10201 chr11 64948646 64948888 + 9.59889 NA promoter-TSS (NM_001198869) promoter-TSS (NM_001198869) 81 NM_001198868 823 Hs.502842 NM_005186 HPRD:00253 CAPN1 CANP|CANP1|CANPL1|muCANP|muCL calpain 1, (mu/I) large subunit protein-coding 13-PTNLD9-TUMOR_peak_7891 chr10 82266024 82266205 + 9.59404 NA intron (NM_030927, intron 3 of 8) LTR24B|LTR|ERV1 -24892 NR_120662 102723703 Hs.308615 NR_120662 LOC102723703 - uncharacterized LOC102723703 ncRNA 13-PTNLD9-TUMOR_peak_42392 chr5 141249192 141249425 + 9.59404 NA promoter-TSS (NM_001278613) promoter-TSS (NM_001278613) -116 NM_001278613 5097 Hs.79769 NM_002587 HPRD:04692 PCDH1 PC42|PCDH42 protocadherin 1 protein-coding 13-PTNLD9-TUMOR_peak_24629 chr19 30178522 30178693 + 9.59404 NA Intergenic L1MB7|LINE|L1 22280 NM_024310 79156 Hs.466383 NM_024310 HPRD:15146 PLEKHF1 APPD|LAPF|PHAFIN1|ZFYVE15 pleckstrin homology domain containing, family F (with FYVE domain) member 1 protein-coding 13-PTNLD9-TUMOR_peak_39844 chr4 170150774 170150937 + 9.59082 NA intron (NM_020870, intron 2 of 11) intron (NM_020870, intron 2 of 11) 41394 NM_020870 57630 Hs.301804 NM_020870 HPRD:15335 SH3RF1 POSH|RNF142|SH3MD2 SH3 domain containing ring finger 1 protein-coding 13-PTNLD9-TUMOR_peak_26193 chr2 16015342 16015570 + 9.59082 NA Intergenic MIRc|SINE|MIR -45065 NR_125783 103752554 Hs.269571 NR_125783 MYCNUT MYCNUN|lncUSMycN MYCN upstream transcript (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_33186 chr22 36026005 36026203 + 9.59082 NA Intergenic Intergenic -6703 NM_203377 4151 Hs.517586 NM_005368 HPRD:01170 MB PVALB|myoglobgin myoglobin protein-coding 13-PTNLD9-TUMOR_peak_46217 chr6 146056680 146056809 + 9.59082 NA 5' UTR (NM_005670, exon 1 of 4) 5' UTR (NM_005670, exon 1 of 4) 247 NM_005670 7957 Hs.486696 NM_005670 HPRD:06345 EPM2A EPM2|MELF epilepsy, progressive myoclonus type 2A, Lafora disease (laforin) protein-coding 13-PTNLD9-TUMOR_peak_12592 chr12 42632133 42632311 + 9.59082 NA promoter-TSS (NM_005748) promoter-TSS (NM_005748) -68 NM_005748 10138 Hs.649195 NM_005748 HPRD:09606 YAF2 - YY1 associated factor 2 protein-coding 13-PTNLD9-TUMOR_peak_7668 chr10 73003844 73004086 + 9.58866 NA intron (NM_001244889, intron 1 of 15) intron (NM_001244889, intron 1 of 15) -25980 NR_038453 728978 Hs.646725 NR_038453 ENSG00000237512 UNC5B-AS1 - UNC5B antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_28478 chr2 132559468 132559639 + 9.58866 NA promoter-TSS (NM_214461) promoter-TSS (NM_214461) -319 NM_214461 408029 Hs.145567 NM_214461 HPRD:14664 C2orf27B - chromosome 2 open reading frame 27B protein-coding 13-PTNLD9-TUMOR_peak_39750 chr4 159011150 159011404 + 9.58866 NA Intergenic L1PA2|LINE|L1 82441 NM_016613 51313 Hs.567498 NM_016613 HPRD:13194 FAM198B AD036|C4orf18 family with sequence similarity 198, member B protein-coding 13-PTNLD9-TUMOR_peak_17192 chr15 44955292 44955522 + 9.58579 NA intron (NM_025137, intron 1 of 39) CpG 469 NM_001160227 80208 Hs.656271 NM_025137 HPRD:07963 SPG11 KIAA1840 spastic paraplegia 11 (autosomal recessive) protein-coding 13-PTNLD9-TUMOR_peak_44468 chr6 30649982 30650131 + 9.58579 NA intron (NM_133471, intron 1 of 2).4 intron (NM_133471, intron 1 of 2).4 5037 NM_001134870 170954 Hs.101150 NM_133471 ENSG00000146112 PPP1R18 HKMT1098|KIAA1949 protein phosphatase 1, regulatory subunit 18 protein-coding 13-PTNLD9-TUMOR_peak_53114 chr9 35646305 35646539 + 9.58579 NA Intergenic Intergenic 4525 NM_014450 27240 Hs.88012 NM_014450 HPRD:05394 SIT1 SIT|SIT-R signaling threshold regulating transmembrane adaptor 1 protein-coding 13-PTNLD9-TUMOR_peak_36993 chr3 184283682 184283819 + 9.58493 NA intron (NM_004443, intron 1 of 15) intron (NM_004443, intron 1 of 15) 4163 NM_004443 2049 Hs.2913 NM_004443 HPRD:03502 EPHB3 ETK2|HEK2|TYRO6 EPH receptor B3 protein-coding 13-PTNLD9-TUMOR_peak_1847 chr1 54744857 54745084 + 9.58403 NA intron (NM_145716, intron 5 of 17) intron (NM_145716, intron 5 of 17) 42854 NR_103541 619518 Hs.591438 NM_001034847 SSBP3-AS1 C1orf191|MST128 SSBP3 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_3656 chr1 151962092 151962225 + 9.58369 NA intron (NM_002966, intron 1 of 2) intron (NM_002966, intron 1 of 2) 4556 NM_002966 6281 Hs.143873 NM_002966 HPRD:00232 S100A10 42C|ANX2L|ANX2LG|CAL1L|CLP11|Ca[1]|GP11|P11|p10 S100 calcium binding protein A10 protein-coding 13-PTNLD9-TUMOR_peak_17967 chr15 90808781 90808915 + 9.58150 NA promoter-TSS (NM_001033088) promoter-TSS (NM_001033088) -47 NM_001033088 51335 Hs.135471 NM_016645 HPRD:14825 NGRN DSC92 neugrin, neurite outgrowth associated protein-coding 13-PTNLD9-TUMOR_peak_6238 chr10 557099 557260 + 9.58150 NA intron (NM_014974, intron 1 of 36) intron (NM_014974, intron 1 of 36) 130539 NR_049884 100847086 NR_049884 MIR5699 - microRNA 5699 ncRNA 13-PTNLD9-TUMOR_peak_47768 chr7 66490545 66490695 + 9.58150 NA intron (NM_018264, intron 7 of 15) intron (NM_018264, intron 7 of 15) 28828 NM_018264 55253 Hs.520917 NM_018264 HPRD:07711 TYW1 RSAFD1|TYW1A|YPL207W tRNA-yW synthesizing protein 1 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_10526 chr11 71524662 71525008 + 9.58150 NA promoter-TSS (NR_073388) promoter-TSS (NR_073388) 70 NR_073386 285407 Hs.546711 NR_073386 ENSG00000248671 ALG1L9P - asparagine-linked glycosylation 1-like 9, pseudogene pseudo 13-PTNLD9-TUMOR_peak_53936 chr9 92134326 92134507 + 9.58150 NA Intergenic MLT1F|LTR|ERVL-MaLR -39805 NM_001142287 10507 Hs.494406 NM_006378 HPRD:03520 SEMA4D C9orf164|CD100|M-sema-G|SEMAJ|coll-4 sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D protein-coding 13-PTNLD9-TUMOR_peak_14633 chr13 40976610 40976758 + 9.58150 NA intron (NR_024506, intron 5 of 5) intron (NR_024506, intron 5 of 5) 78459 NR_024507 646982 Hs.287664 NR_024505 LINC00598 TTL long intergenic non-protein coding RNA 598 ncRNA 13-PTNLD9-TUMOR_peak_33592 chr3 4909331 4909539 + 9.58150 NA Intergenic Intergenic -30475 NR_037903 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_12982 chr12 56448946 56449061 + 9.58150 NA Intergenic AluSz|SINE|Alu 13317 NM_001029 6231 Hs.447562 NM_001029 HPRD:04743 RPS26 DBA10|S26 ribosomal protein S26 protein-coding 13-PTNLD9-TUMOR_peak_17772 chr15 80448292 80448431 + 9.58150 NA intron (NM_000137, intron 1 of 13) LTR13A|LTR|ERVK 3128 NM_000137 2184 Hs.73875 NM_000137 HPRD:02040 FAH - fumarylacetoacetate hydrolase (fumarylacetoacetase) protein-coding 13-PTNLD9-TUMOR_peak_10119 chr11 63612825 63613082 + 9.58150 NA intron (NM_004954, intron 1 of 16) intron (NM_004954, intron 1 of 16) 6553 NM_001039469 2011 Hs.567261 NM_004954 HPRD:02753 MARK2 EMK-1|EMK1|PAR-1|Par-1b|Par1b MAP/microtubule affinity-regulating kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_52793 chr9 16032123 16032348 + 9.58150 NA Intergenic Intergenic 220870 NM_001271829 100129385 Hs.586441 NM_001271829 ENSG00000205549 C9orf92 Em:AL513424.1 chromosome 9 open reading frame 92 protein-coding 13-PTNLD9-TUMOR_peak_53903 chr9 90959632 90959860 + 9.58150 NA Intergenic MER39|LTR|ERV1 -43551 NM_006717 10927 Hs.146804 NM_006717 HPRD:18096 SPIN1 SPIN spindlin 1 protein-coding 13-PTNLD9-TUMOR_peak_12950 chr12 55480518 55480697 + 9.58150 NA Intergenic L1PA3|LINE|L1 -42946 NM_001005243 441639 Hs.553827 NM_001005243 HPRD:15090 OR9K2 OR12-2 olfactory receptor, family 9, subfamily K, member 2 protein-coding 13-PTNLD9-TUMOR_peak_28842 chr2 159581402 159581658 + 9.58150 NA Intergenic Intergenic -70299 NM_001017920 92196 Hs.59761 NM_001017920 HPRD:18709 DAPL1 - death associated protein-like 1 protein-coding 13-PTNLD9-TUMOR_peak_15755 chr14 52327326 52327488 + 9.58150 NA 5' UTR (NM_053064, exon 1 of 4) 5' UTR (NM_053064, exon 1 of 4) 385 NM_001243773 54331 Hs.187772 NM_053064 HPRD:16234 GNG2 - guanine nucleotide binding protein (G protein), gamma 2 protein-coding 13-PTNLD9-TUMOR_peak_19402 chr16 56459370 56459617 + 9.58150 NA promoter-TSS (NM_001144) promoter-TSS (NM_001144) -43 NM_001144 267 Hs.295137 NM_001144 HPRD:09130 AMFR GP78|RNF45 autocrine motility factor receptor, E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_43028 chr5 172124537 172124728 + 9.58150 NA Intergenic Intergenic 56356 NM_001142651 54492 Hs.91521 NM_001142651 ENSG00000214357 NEURL1B NEURL3|hNeur2|neur2 neuralized E3 ubiquitin protein ligase 1B protein-coding 13-PTNLD9-TUMOR_peak_12329 chr12 25648653 25648754 + 9.58150 NA TTS (NM_001145727) TTS (NM_001145727) 57514 NM_001145728 160492 Hs.44647 NM_152590 HPRD:08768 LMNTD1 IFLTD1|PAS1C1 lamin tail domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_35456 chr3 115719244 115719414 + 9.58150 NA intron (NM_002338, intron 3 of 6) MIRc|SINE|MIR -359542 NR_109998 101926903 Hs.26479 NR_109998 ENSG00000240922 LSAMP-AS1 - uncharacterized LOC101926903 ncRNA 13-PTNLD9-TUMOR_peak_24658 chr19 31899763 31899983 + 9.58150 NA Intergenic Intergenic -59683 NM_020856 57616 Hs.278436 NM_020856 HPRD:18351 TSHZ3 TSH3|ZNF537 teashirt zinc finger homeobox 3 protein-coding 13-PTNLD9-TUMOR_peak_48496 chr7 99814877 99815045 + 9.57293 NA intron (NR_028038, intron 5 of 6) intron (NR_028038, intron 5 of 6) -1910 NM_024070 79037 Hs.729356 NM_024070 ENSG00000213413 PVRIG C7orf15 poliovirus receptor related immunoglobulin domain containing protein-coding 13-PTNLD9-TUMOR_peak_15207 chr14 19641964 19642299 + 9.56983 NA Intergenic Intergenic -7901 NR_110526 503639 Hs.659013 NM_001013701 DUXAP10 - double homeobox A pseudogene 10 pseudo 13-PTNLD9-TUMOR_peak_17858 chr15 84864523 84864663 + 9.56452 NA intron (NR_033738, intron 3 of 7) intron (NR_033738, intron 3 of 7) 3993 NR_033738 440300 Hs.546565 NR_033738 LOC440300 - chondroitin sulfate proteoglycan 4 pseudogene pseudo 13-PTNLD9-TUMOR_peak_52318 chr8 141517251 141517442 + 9.56394 NA Intergenic Intergenic -4051 NM_017444 54108 Hs.279704 NM_017444 HPRD:06275 CHRAC1 CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1 chromatin accessibility complex 1 protein-coding 13-PTNLD9-TUMOR_peak_3268 chr1 145055135 145055266 + 9.56394 NA intron (NM_022359, intron 1 of 6) intron (NM_022359, intron 1 of 6) -15205 NM_001198832 9659 Hs.584841 NM_014644 HPRD:10482 PDE4DIP CMYA2|MMGL phosphodiesterase 4D interacting protein protein-coding 13-PTNLD9-TUMOR_peak_41633 chr5 102006968 102007151 + 9.56116 NA non-coding (NR_103753, exon 1 of 3) non-coding (NR_103753, exon 1 of 3) 109 NR_103756 285708 Hs.533011 NR_103753 LINC00491 - long intergenic non-protein coding RNA 491 ncRNA 13-PTNLD9-TUMOR_peak_35405 chr3 112982033 112982199 + 9.56048 NA intron (NM_033254, intron 4 of 19) intron (NM_033254, intron 4 of 19) 50741 NM_033254 91653 Hs.591318 NM_033254 ENSG00000144857 BOC CDON2 BOC cell adhesion associated, oncogene regulated protein-coding 13-PTNLD9-TUMOR_peak_47344 chr7 44118260 44118428 + 9.56048 NA exon (NM_013284, exon 5 of 11) exon (NM_013284, exon 5 of 11) 3795 NR_104299 27434 Hs.596982 NM_013284 HPRD:16208 POLM Pol Mu|Tdt-N polymerase (DNA directed), mu protein-coding 13-PTNLD9-TUMOR_peak_109 chr1 1981001 1981174 + 9.56048 NA promoter-TSS (NM_002744) promoter-TSS (NM_002744) -822 NM_002744 5590 Hs.496255 NM_002744 HPRD:01504 PRKCZ PKC-ZETA|PKC2 protein kinase C, zeta protein-coding 13-PTNLD9-TUMOR_peak_25461 chr19 51107608 51107784 + 9.56048 NA promoter-TSS (NR_004384) promoter-TSS (NR_004384) -524 NR_004384 100126781 Hs.707968 NR_004384 SNAR-F - small ILF3/NF90-associated RNA F snRNA 13-PTNLD9-TUMOR_peak_11639 chr11 129736382 129736549 + 9.55526 NA intron (NM_001143835, intron 24 of 26) intron (NM_001143835, intron 24 of 26) 26439 NM_006165 4798 Hs.530539 NM_006165 HPRD:01240 NFRKB INO80G nuclear factor related to kappaB binding protein protein-coding 13-PTNLD9-TUMOR_peak_19081 chr16 31499024 31499427 + 9.55526 NA intron (NM_003041, intron 7 of 13) CpG-9158 4786 NM_003041 6524 Hs.709195 NM_003041 HPRD:08919 SLC5A2 SGLT2 solute carrier family 5 (sodium/glucose cotransporter), member 2 protein-coding 13-PTNLD9-TUMOR_peak_27322 chr2 74939893 74940051 + 9.55134 NA Intergenic Intergenic 58617 NR_073398 10505 Hs.25887 NM_004263 SEMA4F M-SEMA|PRO2353|S4F|SEMAM|SEMAW|m-Sema-M sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4F protein-coding 13-PTNLD9-TUMOR_peak_33167 chr22 35608135 35608301 + 9.55134 NA Intergenic Intergenic -45227 NR_027780 10042 Hs.588815 NM_005487 HPRD:05267 HMGXB4 HMG2L1|HMGBCG|THC211630 HMG box domain containing 4 protein-coding 13-PTNLD9-TUMOR_peak_47804 chr7 69643852 69644048 + 9.55134 NA intron (NM_001127231, intron 4 of 17) intron (NM_001127231, intron 4 of 17) 580045 NM_001127231 26053 Hs.21631 NM_015570 HPRD:06276 AUTS2 FBRSL2|MRD26 autism susceptibility candidate 2 protein-coding 13-PTNLD9-TUMOR_peak_47549 chr7 55756989 55757403 + 9.55134 NA promoter-TSS (NR_027342) promoter-TSS (NR_027342) -43 NR_027339 360132 Hs.446691 NM_182827 HPRD:16900 FKBP9P1 FKBP9L FK506 binding protein 9 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_44744 chr6 34779181 34779285 + 9.55134 NA intron (NM_017754, intron 1 of 20) AluJb|SINE|Alu 19439 NM_017754 54887 Hs.700656 NM_017754 HPRD:12838 UHRF1BP1 C6orf107|ICBP90|dJ349A12.1 UHRF1 binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_34476 chr3 47866328 47866516 + 9.55134 NA intron (NM_014966, intron 5 of 22) intron (NM_014966, intron 5 of 22) 22023 NM_014966 22907 Hs.517948 NM_014966 HPRD:13142 DHX30 DDX30|RETCOR DEAH (Asp-Glu-Ala-His) box helicase 30 protein-coding 13-PTNLD9-TUMOR_peak_18625 chr16 16060873 16061052 + 9.55134 NA intron (NM_004996, intron 1 of 30) intron (NM_004996, intron 1 of 30) 17528 NM_004996 4363 Hs.391464 NM_004996 HPRD:01153 ABCC1 ABC29|ABCC|GS-X|MRP|MRP1 ATP-binding cassette, sub-family C (CFTR/MRP), member 1 protein-coding 13-PTNLD9-TUMOR_peak_34808 chr3 61951935 61952171 + 9.55134 NA intron (NM_002841, intron 2 of 29) intron (NM_002841, intron 2 of 29) 352569 NR_038281 100506994 Hs.656620 NR_038281 ENSG00000241472 PTPRG-AS1 - PTPRG antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_9952 chr11 59624834 59625150 + 9.55134 NA intron (NM_001062, intron 5 of 8) L2c|LINE|L2 9049 NM_001062 6947 Hs.2012 NM_001062 HPRD:01795 TCN1 HC|TC-1|TC1|TCI transcobalamin I (vitamin B12 binding protein, R binder family) protein-coding 13-PTNLD9-TUMOR_peak_35746 chr3 126645665 126645795 + 9.55134 NA intron (NM_032343, intron 6 of 7) intron (NM_032343, intron 6 of 7) -61707 NM_032242 5361 Hs.432329 NM_032242 HPRD:11868 PLXNA1 NOV|NOVP|PLEXIN-A1|PLXN1 plexin A1 protein-coding 13-PTNLD9-TUMOR_peak_31263 chr20 45775369 45775607 + 9.55134 NA intron (NM_005244, intron 10 of 15) L2a|LINE|L2 -20121 NR_037410 100500814 NR_037410 MIR3616 - microRNA 3616 ncRNA 13-PTNLD9-TUMOR_peak_14160 chr12 123293426 123293611 + 9.55134 NA intron (NM_201435, intron 10 of 12) L1ME1|LINE|L1 -26521 NM_003959 9026 Hs.524815 NM_003959 HPRD:10412 HIP1R HIP12|HIP3|ILWEQ huntingtin interacting protein 1 related protein-coding 13-PTNLD9-TUMOR_peak_10650 chr11 75183098 75183351 + 9.55134 NA intron (NM_030792, intron 3 of 16) MIRc|SINE|MIR -41550 NM_001039548 283212 Hs.292451 NM_173583 HPRD:08747 KLHL35 - kelch-like family member 35 protein-coding 13-PTNLD9-TUMOR_peak_39437 chr4 140691629 140691780 + 9.55134 NA intron (NM_018717, intron 3 of 5) intron (NM_018717, intron 3 of 5) 104782 NM_002413 4258 Hs.81874 NM_002413 HPRD:03436 MGST2 GST2|MGST-II microsomal glutathione S-transferase 2 protein-coding 13-PTNLD9-TUMOR_peak_5482 chr1 222720421 222720591 + 9.55134 NA intron (NM_024746, intron 1 of 8) intron (NM_024746, intron 1 of 8) 938 NM_024746 79802 Hs.665660 NM_024746 HPRD:08587 HHIPL2 KIAA1822L HHIP-like 2 protein-coding 13-PTNLD9-TUMOR_peak_31656 chr20 55664804 55664946 + 9.55134 NA Intergenic Intergenic -123877 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_26061 chr2 9748124 9748283 + 9.55134 NA intron (NM_006826, intron 2 of 5) intron (NM_006826, intron 2 of 5) 22981 NM_006826 10971 Hs.74405 NM_006826 HPRD:00886 YWHAQ 14-3-3|1C5|HS1 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta protein-coding 13-PTNLD9-TUMOR_peak_32892 chr22 22711674 22711871 + 9.55134 NA Intergenic Intergenic 59309 NR_027293 96610 Hs.449601 NM_080926 HPRD:14302 BMS1P20 - BMS1 pseudogene 20 pseudo 13-PTNLD9-TUMOR_peak_14989 chr13 99159528 99159629 + 9.55134 NA intron (NM_001032296, intron 2 of 10) intron (NM_001032296, intron 2 of 10) 14801 NM_003576 8428 Hs.508514 NM_003576 HPRD:10385 STK24 HEL-S-95|MST3|MST3B|STE20|STK3 serine/threonine kinase 24 protein-coding 13-PTNLD9-TUMOR_peak_27152 chr2 68144464 68144825 + 9.55134 NA Intergenic Intergenic -91950 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LOC101927701 - uncharacterized LOC101927701 ncRNA 13-PTNLD9-TUMOR_peak_17453 chr15 65341777 65341920 + 9.55134 NA intron (NM_178859, intron 1 of 3) intron (NM_178859, intron 1 of 3) 4140 NM_178859 123264 Hs.27018 NM_178859 HPRD:17811 SLC51B OSTB|OSTBETA solute carrier family 51, beta subunit protein-coding 13-PTNLD9-TUMOR_peak_46548 chr6 168338728 168338909 + 9.55134 NA intron (NM_001291964, intron 22 of 32) intron (NM_001291964, intron 22 of 32) 38801 NM_001129895 100128124 Hs.448059 NM_001129895 HGC6.3 - uncharacterized LOC100128124 protein-coding 13-PTNLD9-TUMOR_peak_33417 chr22 45565531 45565799 + 9.55134 NA intron (NM_007172, intron 2 of 7) LTR13A|LTR|ERVK 5113 NM_153645 10762 Hs.475103 NM_007172 HPRD:05226 NUP50 NPAP60|NPAP60L nucleoporin 50kDa protein-coding 13-PTNLD9-TUMOR_peak_22802 chr18 21851840 21852003 + 9.55134 NA 5' UTR (NM_018030, exon 1 of 14) 5' UTR (NM_018030, exon 1 of 14) 275 NM_018030 114876 Hs.370725 NM_018030 HPRD:09472 OSBPL1A ORP-1|ORP1|OSBPL1B oxysterol binding protein-like 1A protein-coding 13-PTNLD9-TUMOR_peak_14126 chr12 122473293 122473530 + 9.55134 NA intron (NM_001024808, intron 3 of 5) intron (NM_001024808, intron 3 of 5) 13550 NM_001024808 605 Hs.530970 NM_020993 BCL7A BCL7 B-cell CLL/lymphoma 7A protein-coding 13-PTNLD9-TUMOR_peak_41056 chr5 64331565 64331746 + 9.55134 NA Intergenic CpG 266910 NM_001297644 10283 Hs.371372 NM_005869 HPRD:11541 CWC27 NY-CO-10|SDCCAG10 CWC27 spliceosome-associated protein homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_2071 chr1 64652330 64652476 + 9.55134 NA Intergenic LTR18A|LTR|ERVL -17087 NM_152489 148581 Hs.388746 NM_152489 HPRD:14599 UBE2U - ubiquitin-conjugating enzyme E2U (putative) protein-coding 13-PTNLD9-TUMOR_peak_24022 chr19 11856764 11856919 + 9.55134 NA Intergenic AluJr|SINE|Alu -7017 NM_001080493 55552 Hs.142167 NM_017507 ENSG00000197933 ZNF823 HSZFP36 zinc finger protein 823 protein-coding 13-PTNLD9-TUMOR_peak_7409 chr10 54643804 54643989 + 9.55134 NA Intergenic Tigger3c|DNA|TcMar-Tigger -112436 NM_000242 4153 Hs.499674 NM_000242 HPRD:01107 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose-binding lectin (protein C) 2, soluble protein-coding 13-PTNLD9-TUMOR_peak_18871 chr16 28275870 28276175 + 9.54819 NA Intergenic L2a|LINE|L2 -27818 NM_001024401 388228 Hs.97837 NM_001024401 HPRD:18608 SBK1 SBK SH3 domain binding kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_3881 chr1 155658167 155658474 + 9.54819 NA promoter-TSS (NM_004632) promoter-TSS (NM_004632) 127 NM_001198904 55249 Hs.584927 NM_018253 HPRD:08485 YY1AP1 HCCA1|HCCA2|YAP|YY1AP YY1 associated protein 1 protein-coding 13-PTNLD9-TUMOR_peak_22188 chr17 76929574 76929759 + 9.54819 NA Intergenic Intergenic -8194 NM_003255 7077 Hs.633514 NM_003255 HPRD:01784 TIMP2 CSC-21K|DDC8 TIMP metallopeptidase inhibitor 2 protein-coding 13-PTNLD9-TUMOR_peak_31022 chr20 37819871 37820145 + 9.54819 NA Intergenic Intergenic 33383 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LOC339568 - uncharacterized LOC339568 ncRNA 13-PTNLD9-TUMOR_peak_53681 chr9 78795483 78795758 + 9.54819 NA intron (NR_120409, intron 14 of 19) intron (NR_120409, intron 14 of 19) 213824 NM_018339 55312 Hs.37558 NM_018339 HPRD:17969 RFK RIFK riboflavin kinase protein-coding 13-PTNLD9-TUMOR_peak_49760 chr7 153584319 153584436 + 9.54819 NA 5' UTR (NM_001039350, exon 1 of 26) 5' UTR (NM_001039350, exon 1 of 26) 195 NM_001039350 1804 Hs.490684 NM_001936 HPRD:00525 DPP6 DPPX|VF2 dipeptidyl-peptidase 6 protein-coding 13-PTNLD9-TUMOR_peak_18076 chr15 99995220 99995415 + 9.54819 NA Intergenic Intergenic -110816 NM_005587 4205 Hs.268675 NM_005587 HPRD:02807 MEF2A ADCAD1|RSRFC4|RSRFC9|mef2 myocyte enhancer factor 2A protein-coding 13-PTNLD9-TUMOR_peak_4770 chr1 185410789 185411014 + 9.54819 NA Intergenic Intergenic -106730 NR_038424 100288079 Hs.131220 NR_038424 ENSG00000261024 GS1-279B7.1 - microtubule-associated protein 1 light chain 3 beta pseudogene pseudo 13-PTNLD9-TUMOR_peak_42280 chr5 139056750 139056903 + 9.54819 NA intron (NM_016463, intron 1 of 2) CpG 28525 NM_016463 51523 Hs.744933 NM_016463 HPRD:13105 CXXC5 CF5|RINF|WID CXXC finger protein 5 protein-coding 13-PTNLD9-TUMOR_peak_12872 chr12 53343624 53343762 + 9.54708 NA promoter-TSS (NR_045962) promoter-TSS (NR_045962) -43 NM_001256293 3856 Hs.533782 NM_002273 HPRD:01015 KRT8 CARD2|CK-8|CK8|CYK8|K2C8|K8|KO keratin 8 protein-coding 13-PTNLD9-TUMOR_peak_16776 chr15 22491283 22491406 + 9.54708 NA Intergenic Intergenic -55221 NR_033735 646396 Hs.451294 NR_033735 REREP3 - arginine-glutamic acid dipeptide (RE) repeats pseudogene 3 pseudo 13-PTNLD9-TUMOR_peak_15897 chr14 58711814 58711995 + 9.54708 NA intron (NR_038123, intron 1 of 9) intron (NR_038123, intron 1 of 9) 381 NM_152132 5684 Hs.558799 NM_002788 HPRD:01463 PSMA3 HC8|PSC3 proteasome (prosome, macropain) subunit, alpha type, 3 protein-coding 13-PTNLD9-TUMOR_peak_855 chr1 28575558 28575691 + 9.54047 NA Intergenic Intergenic -10339 NM_031459 83667 Hs.469543 NM_031459 HPRD:06378 SESN2 HI95|SES2|SEST2 sestrin 2 protein-coding 13-PTNLD9-TUMOR_peak_4063 chr1 159880256 159880495 + 9.53906 NA Intergenic Intergenic -10469 NM_012337 25790 Hs.647705 NM_012337 HPRD:05514 CFAP45 CCDC19|NESG1 cilia and flagella associated protein 45 protein-coding 13-PTNLD9-TUMOR_peak_11654 chr11 130048832 130048979 + 9.53906 NA intron (NM_021978, intron 1 of 18) intron (NM_021978, intron 1 of 18) 19223 NM_021978 6768 Hs.504315 NM_021978 HPRD:06005 ST14 ARCI11|HAI|MT-SP1|MTSP1|PRSS14|SNC19|TADG15|TMPRSS14 suppression of tumorigenicity 14 (colon carcinoma) protein-coding 13-PTNLD9-TUMOR_peak_51903 chr8 126398951 126399144 + 9.53743 NA Intergenic MIRc|SINE|MIR -43516 NM_025195 10221 Hs.444947 NM_025195 HPRD:09863 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 13-PTNLD9-TUMOR_peak_36654 chr3 168762258 168762389 + 9.53743 NA Intergenic Intergenic 101770 NM_001105077 2122 Hs.744090 NM_004991 HPRD:01310 MECOM AML1-EVI-1|EVI1|MDS1|MDS1-EVI1|PRDM3 MDS1 and EVI1 complex locus protein-coding 13-PTNLD9-TUMOR_peak_46871 chr7 7532197 7532420 + 9.53743 NA intron (NM_001037763, intron 11 of 34) intron (NM_001037763, intron 11 of 34) 43152 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen, type XXVIII, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_43644 chr6 6712535 6713099 + 9.53743 NA Intergenic X7B_LINE|LINE|CR1 -89758 NR_026970 285780 Hs.655737 NM_173675 HPRD:08165 LY86-AS1 LY86-AS|LY86AS LY86 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_24002 chr19 11466008 11466218 + 9.53743 NA promoter-TSS (NM_001170635) promoter-TSS (NM_001170635) 51 NM_022737 64748 Hs.6846 NM_022737 HPRD:17442 LPPR2 PRG4 lipid phosphate phosphatase-related protein type 2 protein-coding 13-PTNLD9-TUMOR_peak_15045 chr13 103451309 103451479 + 9.53743 NA promoter-TSS (NM_024089) promoter-TSS (NM_024089) -5 NM_017693 54841 Hs.288809 NM_017693 HPRD:09827 BIVM - basic, immunoglobulin-like variable motif containing protein-coding 13-PTNLD9-TUMOR_peak_11253 chr11 113424098 113424293 + 9.53743 NA Intergenic MIRb|SINE|MIR -78194 NM_000795 1813 Hs.73893 NM_000795 HPRD:00539 DRD2 D2DR|D2R dopamine receptor D2 protein-coding 13-PTNLD9-TUMOR_peak_40875 chr5 54450779 54450980 + 9.53743 NA intron (NM_152623, intron 2 of 11) intron (NM_152623, intron 2 of 11) -5105 NM_001008397 493869 Hs.289044 NM_001008397 GPX8 EPLA847|GPx-8|GSHPx-8|UNQ847 glutathione peroxidase 8 (putative) protein-coding 13-PTNLD9-TUMOR_peak_15592 chr14 38241408 38241572 + 9.53743 NA Intergenic L1PA3|LINE|L1 -177165 NM_004496 3169 Hs.163484 NM_004496 HPRD:03801 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 13-PTNLD9-TUMOR_peak_12010 chr12 6944918 6945129 + 9.53743 NA intron (NM_014262, intron 9 of 14) intron (NM_014262, intron 9 of 14) -4995 NM_001297571 2784 Hs.631657 NM_002075 HPRD:00743 GNB3 - guanine nucleotide binding protein (G protein), beta polypeptide 3 protein-coding 13-PTNLD9-TUMOR_peak_35368 chr3 112057387 112057616 + 9.53743 NA intron (NM_001004196, intron 2 of 6) intron (NM_001004196, intron 2 of 6) 5585 NM_005944 4345 Hs.79015 NM_005944 ENSG00000091972 CD200 MOX1|MOX2|MRC|OX-2 CD200 molecule protein-coding 13-PTNLD9-TUMOR_peak_29308 chr2 187409022 187409279 + 9.53743 NA Intergenic Intergenic -45640 NM_002210 3685 Hs.436873 NM_002210 HPRD:01903 ITGAV CD51|MSK8|VNRA|VTNR integrin, alpha V protein-coding 13-PTNLD9-TUMOR_peak_31283 chr20 46095931 46096145 + 9.53743 NA Intergenic AluSz6|SINE|Alu -34563 NM_001174087 8202 Hs.592142 NM_006534 HPRD:03570 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 13-PTNLD9-TUMOR_peak_45564 chr6 79950297 79950517 + 9.53743 NA Intergenic MLT1I|LTR|ERVL-MaLR -5952 NM_004242 9324 Hs.77558 NM_004242 HPRD:16062 HMGN3 PNAS-25|TRIP7 high mobility group nucleosomal binding domain 3 protein-coding 13-PTNLD9-TUMOR_peak_33162 chr22 33500199 33500381 + 9.53743 NA Intergenic Intergenic -45913 NM_001135774 8224 Hs.608750 NM_003490 HPRD:04083 SYN3 - synapsin III protein-coding 13-PTNLD9-TUMOR_peak_27130 chr2 66723295 66723500 + 9.53743 NA intron (NM_002398, intron 7 of 12) intron (NM_002398, intron 7 of 12) 60865 NM_002398 4211 Hs.526754 NM_002398 HPRD:03442 MEIS1 - Meis homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_17658 chr15 74838558 74838758 + 9.53743 NA intron (NM_006465, intron 2 of 8) intron (NM_006465, intron 2 of 8) 5110 NM_006465 10620 Hs.655532 NM_006465 HPRD:09806 ARID3B BDP|DRIL2 AT rich interactive domain 3B (BRIGHT-like) protein-coding 13-PTNLD9-TUMOR_peak_44504 chr6 31026037 31026318 + 9.53743 NA intron (NR_003948, intron 3 of 3).5 Charlie13b|DNA|hAT-Charlie 4950 NR_003948 285834 Hs.207528 NR_003948 ENSG00000228789 HCG22 PBMUCL2 HLA complex group 22 ncRNA 13-PTNLD9-TUMOR_peak_15825 chr14 55272653 55272774 + 9.53743 NA Intergenic Intergenic 51207 NM_001161577 23034 Hs.98259 NM_015589 HPRD:10209 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 13-PTNLD9-TUMOR_peak_49882 chr7 158627535 158627751 + 9.53284 NA Intergenic LTR13A|LTR|ERVK -5324 NM_020728 57488 Hs.490795 NM_020728 HPRD:13053 ESYT2 CHR2SYT|E-Syt2|FAM62B extended synaptotagmin-like protein 2 protein-coding 13-PTNLD9-TUMOR_peak_49036 chr7 129466218 129466357 + 9.53168 NA Intergenic AluSz|SINE|Alu -51433 NR_029615 406959 NR_029615 miRBase:MI0000273 MIR183 MIRN183|miR-183|miRNA183 microRNA 183 ncRNA 13-PTNLD9-TUMOR_peak_2068 chr1 64505269 64505472 + 9.52886 NA intron (NM_001083592, intron 2 of 6) intron (NM_001083592, intron 2 of 6) 72518 NR_110666 101927034 Hs.680824 NR_110665 ENSG00000223949 ROR1-AS1 - ROR1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_18800 chr16 23914405 23914580 + 9.52886 NA intron (NM_212535, intron 2 of 16) intron (NM_212535, intron 2 of 16) 67192 NM_212535 5579 Hs.460355 NM_002738 HPRD:01499 PRKCB PKC-beta|PKCB|PRKCB1|PRKCB2 protein kinase C, beta protein-coding 13-PTNLD9-TUMOR_peak_21992 chr17 73440514 73440800 + 9.52886 NA Intergenic Intergenic -12007 NM_014738 9772 Hs.514474 NM_014738 HPRD:11068 KIAA0195 TMEM94 KIAA0195 protein-coding 13-PTNLD9-TUMOR_peak_44258 chr6 26537622 26537993 + 9.51581 NA promoter-TSS (NM_006353) promoter-TSS (NM_006353) -765 NM_006353 10473 Hs.236774 NM_006353 HMGN4 HMG17L3|NHC high mobility group nucleosomal binding domain 4 protein-coding 13-PTNLD9-TUMOR_peak_21283 chr17 44840748 44841074 + 9.51215 NA 3' UTR (NM_030753, exon 5 of 5) 3' UTR (NM_030753, exon 5 of 5) 55215 NM_030753 7473 Hs.445884 NM_030753 HPRD:01318 WNT3 INT4 wingless-type MMTV integration site family, member 3 protein-coding 13-PTNLD9-TUMOR_peak_53970 chr9 93666537 93666667 + 9.51215 NA Intergenic HERVK13-int|LTR|ERVK 76900 NM_001174167 6850 Hs.371720 NM_003177 HPRD:02514 SYK p72-Syk spleen tyrosine kinase protein-coding 13-PTNLD9-TUMOR_peak_31437 chr20 49038918 49039052 + 9.51215 NA Intergenic L2c|LINE|L2 -87873 NM_002827 5770 Hs.417549 NM_002827 HPRD:01477 PTPN1 PTP1B protein tyrosine phosphatase, non-receptor type 1 protein-coding 13-PTNLD9-TUMOR_peak_28451 chr2 131450407 131450666 + 9.51215 NA Intergenic Intergenic 12913 NR_023391 100132708 Hs.734862 NM_032248 ENSG00000214081 CYP4F30P C2orf14 cytochrome P450, family 4, subfamily F, polypeptide 30, pseudogene pseudo 13-PTNLD9-TUMOR_peak_13859 chr12 111801496 111801602 + 9.51215 NA intron (NM_001177997, intron 2 of 2) MIR|SINE|MIR 5376 NM_001177996 144717 Hs.173088 NM_144671 HPRD:08127 FAM109A IPIP27A|SES1 family with sequence similarity 109, member A protein-coding 13-PTNLD9-TUMOR_peak_50259 chr8 21982080 21982243 + 9.51215 NA intron (NM_018411, intron 5 of 17) L2b|LINE|L2 6404 NM_018411 55806 Hs.272367 NM_005144 HPRD:03808 HR ALUNC|AU|HSA277165|HYPT4|MUHH|MUHH1 hair growth associated protein-coding 13-PTNLD9-TUMOR_peak_12116 chr12 10517589 10517801 + 9.51215 NA intron (NR_120430, intron 1 of 3) HERV15-int|LTR|ERV1 1327 NR_120430 101928100 Hs.638425 NR_120430 ENSG00000245648 LOC101928100 - uncharacterized LOC101928100 ncRNA 13-PTNLD9-TUMOR_peak_32379 chr21 42537268 42537435 + 9.51215 NA Intergenic Intergenic -2133 NR_036167 100423023 NR_036167 miRBase:MI0014245 MIR3197 - microRNA 3197 ncRNA 13-PTNLD9-TUMOR_peak_49136 chr7 131544049 131544170 + 9.51215 NA Intergenic Intergenic -50870 NR_110836 101928782 Hs.571369 NR_110836 ENSG00000224865 LOC101928782 - uncharacterized LOC101928782 ncRNA 13-PTNLD9-TUMOR_peak_11571 chr11 127117455 127117647 + 9.51215 NA Intergenic L2b|LINE|L2 -23414 NR_120580 101929497 Hs.737442 NR_120580 ENSG00000273409 LOC101929497 - uncharacterized LOC101929497 ncRNA 13-PTNLD9-TUMOR_peak_22510 chr18 6995026 6995352 + 9.51215 NA intron (NM_005559, intron 34 of 62) intron (NM_005559, intron 34 of 62) -65321 NR_034100 400643 Hs.253920 NM_001103383 ENSG00000265933 LINC00668 - long intergenic non-protein coding RNA 668 ncRNA 13-PTNLD9-TUMOR_peak_49299 chr7 138023197 138023526 + 9.51215 NA Intergenic Intergenic -121718 NM_003852 8805 Hs.490287 NM_003852 HPRD:04556 TRIM24 PTC6|RNF82|TF1A|TIF1|TIF1A|TIF1ALPHA|hTIF1 tripartite motif containing 24 protein-coding 13-PTNLD9-TUMOR_peak_15638 chr14 45171054 45171226 + 9.51215 NA Intergenic MLT1H|LTR|ERVL-MaLR -194641 NM_032135 84075 Hs.307086 NM_032135 HPRD:12638 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 13-PTNLD9-TUMOR_peak_13238 chr12 68108609 68108754 + 9.51215 NA intron (NR_110063, intron 4 of 4) intron (NR_110063, intron 4 of 4) 14574 NR_110063 101927901 Hs.369609 NR_110063 ENSG00000255970 LOC101927901 - uncharacterized LOC101927901 ncRNA 13-PTNLD9-TUMOR_peak_52105 chr8 131774612 131774793 + 9.51215 NA Intergenic L2b|LINE|L2 278133 NM_001115 114 Hs.591859 NM_001115 HPRD:00051 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 (brain) protein-coding 13-PTNLD9-TUMOR_peak_39334 chr4 129527449 129527585 + 9.51215 NA Intergenic Intergenic -203261 NM_199320 79960 Hs.12420 NM_024900 HPRD:10151 JADE1 PHF17 jade family PHD finger 1 protein-coding 13-PTNLD9-TUMOR_peak_52395 chr8 143851219 143851356 + 9.51215 NA promoter-TSS (NM_177458) promoter-TSS (NM_177458) -41 NM_177458 66004 Hs.158665 NM_023946 HPRD:16201 LYNX1 SLURP2 Ly6/neurotoxin 1 protein-coding 13-PTNLD9-TUMOR_peak_48637 chr7 102131215 102131369 + 9.51063 NA intron (NM_001277335, intron 16 of 19) intron (NM_001277335, intron 16 of 19) -11911 NM_006234 5439 Hs.654952 NM_006234 HPRD:16038 POLR2J POLR2J1|RPB11|RPB11A|RPB11m|hRPB14 polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa protein-coding 13-PTNLD9-TUMOR_peak_36047 chr3 135914668 135914971 + 9.50815 NA promoter-TSS (NM_018133) promoter-TSS (NM_018133) -131 NM_018133 55167 Hs.18631 NM_018133 HPRD:08550 MSL2 MSL-2|MSL2L1|RNF184 male-specific lethal 2 homolog (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_5114 chr1 203662360 203662563 + 9.50470 NA intron (NM_001684, intron 2 of 20) intron (NM_001684, intron 2 of 20) -36248 NR_003019 677843 Hs.676135 NR_003019 SNORA77 ACA63 small nucleolar RNA, H/ACA box 77 snoRNA 13-PTNLD9-TUMOR_peak_17705 chr15 76603718 76603856 + 9.50258 NA promoter-TSS (NM_000126) promoter-TSS (NM_000126) 23 NM_000126 2108 Hs.39925 NM_000126 HPRD:01979 ETFA EMA|GA2|MADD electron-transfer-flavoprotein, alpha polypeptide protein-coding 13-PTNLD9-TUMOR_peak_33830 chr3 13235203 13235405 + 9.50258 NA Intergenic Intergenic -120687 NM_001134382 9922 Hs.475506 NM_014869 HPRD:11052 IQSEC1 ARF-GEP100|ARFGEP100|BRAG2|GEP100 IQ motif and Sec7 domain 1 protein-coding 13-PTNLD9-TUMOR_peak_15089 chr13 109917490 109917629 + 9.50258 NA Intergenic LTR7Y|LTR|ERV1 -97908 NR_047700 100885782 Hs.655942 NR_047700 ENSG00000236242 MYO16-AS1 - MYO16 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_2872 chr1 112912352 112912611 + 9.50258 NA Intergenic Intergenic -26319 NM_018704 55917 Hs.744100 NM_018704 HPRD:10906 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 13-PTNLD9-TUMOR_peak_25215 chr19 47471132 47471314 + 9.50258 NA intron (NM_004491, intron 2 of 5) L2c|LINE|L2 49290 NM_004491 2909 Hs.509447 NM_004491 HPRD:05592 ARHGAP35 GRF-1|GRLF1|P190-A|P190A|p190ARhoGAP|p190RhoGAP Rho GTPase activating protein 35 protein-coding 13-PTNLD9-TUMOR_peak_12589 chr12 42406418 42406596 + 9.50258 NA Intergenic Intergenic 132166 NM_001099650 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_35346 chr3 111629746 111629929 + 9.50258 NA intron (NM_001134437, intron 3 of 17) intron (NM_001134437, intron 3 of 17) 51269 NM_001134439 90102 Hs.603252 NM_145753 HPRD:06611 PHLDB2 LL5b|LL5beta pleckstrin homology-like domain, family B, member 2 protein-coding 13-PTNLD9-TUMOR_peak_26139 chr2 11672666 11672834 + 9.50258 NA Intergenic Intergenic -1492 NM_014668 9687 Hs.467733 NM_014668 HPRD:13611 GREB1 - growth regulation by estrogen in breast cancer 1 protein-coding 13-PTNLD9-TUMOR_peak_42728 chr5 153784875 153784998 + 9.50258 NA intron (NM_198321, intron 8 of 11) CpG 40446 NR_037897 386627 Hs.652021 NR_037897 SAP30L-AS1 GALNT10-AS1 SAP30L antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_35673 chr3 125100685 125100842 + 9.50258 NA Intergenic L2c|LINE|L2 -6565 NM_021964 7707 Hs.592591 NM_021964 HPRD:03540 ZNF148 BERF-1|BFCOL1|HT-BETA|ZBP-89|ZFP148|pHZ-52 zinc finger protein 148 protein-coding 13-PTNLD9-TUMOR_peak_42680 chr5 150763787 150763940 + 9.50258 NA Intergenic Intergenic -36712 NM_181776 153201 Hs.483877 NM_181776 HPRD:12215 SLC36A2 PAT2|TRAMD1 solute carrier family 36 (proton/amino acid symporter), member 2 protein-coding 13-PTNLD9-TUMOR_peak_51513 chr8 104409891 104410059 + 9.50258 NA TTS (NR_102337) TTS (NR_102337) -16967 NM_015420 25879 Hs.532265 NM_015420 HPRD:08528 DCAF13 GM83|WDSOF1 DDB1 and CUL4 associated factor 13 protein-coding 13-PTNLD9-TUMOR_peak_34712 chr3 55232633 55232872 + 9.50258 NA Intergenic Intergenic -270680 NM_020678 57408 Hs.591668 NM_020678 HPRD:13718 LRTM1 - leucine-rich repeats and transmembrane domains 1 protein-coding 13-PTNLD9-TUMOR_peak_11886 chr12 4872799 4873005 + 9.50258 NA intron (NM_017417, intron 8 of 10) intron (NM_017417, intron 8 of 10) 43150 NM_017417 26290 Hs.511985 NM_017417 HPRD:09374 GALNT8 GALNAC-T8 polypeptide N-acetylgalactosaminyltransferase 8 protein-coding 13-PTNLD9-TUMOR_peak_2820 chr1 110899096 110899400 + 9.50258 NA Intergenic Intergenic 17303 NM_022768 64783 Hs.435947 NM_022768 HPRD:05832 RBM15 OTT|OTT1|SPEN RNA binding motif protein 15 protein-coding 13-PTNLD9-TUMOR_peak_54654 chr9 124009607 124009788 + 9.50258 NA Intergenic Intergenic -20683 NM_001127664 2934 Hs.522373 NM_000177 HPRD:00674 GSN ADF|AGEL gelsolin protein-coding 13-PTNLD9-TUMOR_peak_34938 chr3 71545316 71545436 + 9.50258 NA intron (NM_001012505, intron 2 of 6) intron (NM_001012505, intron 2 of 6) 45864 NR_031697 100302112 NR_031697 miRBase:MI0006431 MIR1284 MIRN1284|hsa-mir-1284 microRNA 1284 ncRNA 13-PTNLD9-TUMOR_peak_45975 chr6 119468554 119468722 + 9.50258 NA intron (NM_001288576, intron 1 of 15) intron (NM_001288576, intron 1 of 15) 1720 NM_001288576 79632 Hs.443789 NM_024581 HPRD:09856 FAM184A C6orf60 family with sequence similarity 184, member A protein-coding 13-PTNLD9-TUMOR_peak_21437 chr17 48142179 48142313 + 9.49715 NA intron (NM_005501, intron 3 of 24) intron (NM_005501, intron 3 of 24) 8906 NM_002204 3675 Hs.265829 NM_002204 HPRD:05431 ITGA3 CD49C|GAP-B3|GAPB3|ILNEB|MSK18|VCA-2|VL3A|VLA3a integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor) protein-coding 13-PTNLD9-TUMOR_peak_21334 chr17 46026756 46026914 + 9.49611 NA TTS (NM_018129) TTS (NM_018129) 7946 NM_018129 55163 Hs.631742 NM_018129 PNPO HEL-S-302|PDXPO pyridoxamine 5'-phosphate oxidase protein-coding 13-PTNLD9-TUMOR_peak_29661 chr2 207630255 207630415 + 9.49611 NA promoter-TSS (NM_001039845) promoter-TSS (NM_001039845) -62 NR_104261 130752 Hs.147816 NM_206892 HPRD:14375 MDH1B RP11-95H11 malate dehydrogenase 1B, NAD (soluble) protein-coding 13-PTNLD9-TUMOR_peak_12135 chr12 11451027 11451158 + 9.49548 NA Intergenic L1PA2|LINE|L1 12277 NM_001261399 5545 Hs.528651 NM_002723 HPRD:01624 PRB4 Po proline-rich protein BstNI subfamily 4 protein-coding 13-PTNLD9-TUMOR_peak_23970 chr19 11047427 11047594 + 9.49548 NA Intergenic Intergenic 8086 NM_138358 90580 Hs.164026 NM_138358 HPRD:14275 C19orf52 - chromosome 19 open reading frame 52 protein-coding 13-PTNLD9-TUMOR_peak_38753 chr4 84049888 84049997 + 9.49408 NA Intergenic Intergenic -14031 NM_001130715 51316 Hs.546392 NM_016619 HPRD:06335 PLAC8 C15|DGIC|onzin placenta-specific 8 protein-coding 13-PTNLD9-TUMOR_peak_1226 chr1 39201371 39201515 + 9.49408 NA Intergenic L2c|LINE|L2 124052 NM_022157 64121 Hs.532461 NM_022157 HPRD:12198 RRAGC GTR2|RAGC|TIB929 Ras-related GTP binding C protein-coding 13-PTNLD9-TUMOR_peak_46473 chr6 161860187 161860342 + 9.49408 NA intron (NM_004562, intron 9 of 11) intron (NM_004562, intron 9 of 11) -165157 NM_020133 56895 Hs.353175 NM_020133 HPRD:12437 AGPAT4 1-AGPAT4|LPAAT-delta|dJ473J16.2 1-acylglycerol-3-phosphate O-acyltransferase 4 protein-coding 13-PTNLD9-TUMOR_peak_26609 chr2 38003775 38003993 + 9.49408 NA Intergenic Intergenic 52970 NR_110011 101929559 Hs.468200 NR_110011 ENSG00000237803 LINC00211 NCRNA00211 long intergenic non-protein coding RNA 211 ncRNA 13-PTNLD9-TUMOR_peak_45271 chr6 51760837 51760989 + 9.49408 NA intron (NM_138694, intron 43 of 66) L1PA3|LINE|L1 191510 NM_170724 5314 Hs.662050 NM_138694 HPRD:05987 PKHD1 ARPKD|FCYT|TIGM1 polycystic kidney and hepatic disease 1 (autosomal recessive) protein-coding 13-PTNLD9-TUMOR_peak_56067 chrX 67648332 67648537 + 9.49408 NA intron (NM_002547, intron 2 of 24) L2b|LINE|L2 4865 NM_002547 4983 Hs.128824 NM_002547 HPRD:02130 OPHN1 ARHGAP41|MRX60|OPN1 oligophrenin 1 protein-coding 13-PTNLD9-TUMOR_peak_43649 chr6 6781544 6781695 + 9.49408 NA Intergenic Intergenic -158560 NR_026970 285780 Hs.655737 NM_173675 HPRD:08165 LY86-AS1 LY86-AS|LY86AS LY86 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_51481 chr8 103757727 103757997 + 9.49408 NA Intergenic Intergenic -89732 NM_005655 7071 Hs.435001 NM_005655 HPRD:03527 KLF10 EGR-alpha|EGRA|TIEG|TIEG1 Kruppel-like factor 10 protein-coding 13-PTNLD9-TUMOR_peak_56601 chrX 149711730 149712141 + 9.49227 NA Intergenic Intergenic -25112 NM_000252 4534 Hs.655056 NM_000252 HPRD:02331 MTM1 CNM|MTMX|XLMTM myotubularin 1 protein-coding 13-PTNLD9-TUMOR_peak_1177 chr1 37945313 37945639 + 9.48911 NA promoter-TSS (NR_106790) promoter-TSS (NR_106790) -355 NR_106790 102465438 NR_106790 MIR6732 hsa-mir-6732 microRNA 6732 ncRNA 13-PTNLD9-TUMOR_peak_3603 chr1 151168346 151168528 + 9.48224 NA Intergenic AluY|SINE|Alu -2584 NM_003557 8394 Hs.655131 NM_003557 ENSG00000143398 PIP5K1A - phosphatidylinositol-4-phosphate 5-kinase, type I, alpha protein-coding 13-PTNLD9-TUMOR_peak_802 chr1 27336291 27336542 + 9.47685 NA intron (NM_052943, intron 1 of 1) intron (NM_052943, intron 1 of 1) 2917 NM_052943 115572 Hs.632378 NM_052943 HPRD:16882 FAM46B - family with sequence similarity 46, member B protein-coding 13-PTNLD9-TUMOR_peak_28508 chr2 133173690 133173806 + 9.47685 NA promoter-TSS (NM_001508) promoter-TSS (NM_001508) -399 NM_001508 2863 Hs.432395 NM_001508 HPRD:04198 GPR39 - G protein-coupled receptor 39 protein-coding 13-PTNLD9-TUMOR_peak_30869 chr20 33907782 33907935 + 9.47685 NA intron (NM_018244, intron 7 of 9) intron (NM_018244, intron 7 of 9) -27633 NM_178468 128876 Hs.592149 NM_178468 HPRD:12743 FAM83C C20orf128|dJ614O4.7 family with sequence similarity 83, member C protein-coding 13-PTNLD9-TUMOR_peak_36767 chr3 173112956 173113170 + 9.47685 NA Intergenic Intergenic -3175 NM_014932 22871 Hs.478289 NM_014932 HPRD:07195 NLGN1 NL1 neuroligin 1 protein-coding 13-PTNLD9-TUMOR_peak_6084 chr1 243169394 243169505 + 9.47684 NA Intergenic Intergenic 95597 NR_029401 731275 Hs.722350 NR_029401 LINC01347 - long intergenic non-protein coding RNA 1347 ncRNA 13-PTNLD9-TUMOR_peak_47435 chr7 47597338 47597672 + 9.47684 NA intron (NM_022748, intron 1 of 30) intron (NM_022748, intron 1 of 30) 24237 NM_022748 64759 Hs.520814 NM_022748 ENSG00000136205 TNS3 TEM6|TENS1 tensin 3 protein-coding 13-PTNLD9-TUMOR_peak_20274 chr17 2907616 2907805 + 9.47684 NA intron (NM_015085, intron 14 of 24) intron (NM_015085, intron 14 of 24) -38521 NR_110818 101927911 Hs.626373 NR_110818 ENSG00000262884 LOC101927911 - uncharacterized LOC101927911 ncRNA 13-PTNLD9-TUMOR_peak_48239 chr7 87932765 87932877 + 9.47684 NA intron (NM_001205315, intron 1 of 5) AluSx1|SINE|Alu 3407 NM_024636 79689 Hs.521008 NM_024636 HPRD:11637 STEAP4 STAMP2|TIARP|TNFAIP9 STEAP family member 4 protein-coding 13-PTNLD9-TUMOR_peak_1480 chr1 43994949 43995084 + 9.47684 NA Intergenic Intergenic -1531 NM_002840 5792 Hs.272062 NM_002840 HPRD:01552 PTPRF LAR protein tyrosine phosphatase, receptor type, F protein-coding 13-PTNLD9-TUMOR_peak_13951 chr12 117097692 117097845 + 9.47328 NA Intergenic Intergenic 78075 NM_024738 79794 Hs.592011 NM_024738 HPRD:07962 C12orf49 - chromosome 12 open reading frame 49 protein-coding 13-PTNLD9-TUMOR_peak_1522 chr1 44515638 44515827 + 9.47328 NA Intergenic L1ME3A|LINE|L1 -18568 NM_001024845 6536 Hs.442590 NM_006934 HPRD:03010 SLC6A9 GLYT1 solute carrier family 6 (neurotransmitter transporter, glycine), member 9 protein-coding 13-PTNLD9-TUMOR_peak_44769 chr6 35359203 35359357 + 9.47328 NA intron (NM_001171819, intron 2 of 6) L1MC4|LINE|L1 48945 NM_177435 5467 Hs.696032 NM_006238 HPRD:02679 PPARD FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB peroxisome proliferator-activated receptor delta protein-coding 13-PTNLD9-TUMOR_peak_39428 chr4 140484398 140484541 + 9.47328 NA Intergenic Intergenic -6892 NM_030648 80854 Hs.480792 NM_030648 HPRD:16226 SETD7 KMT7|SET7|SET7/9|SET9 SET domain containing (lysine methyltransferase) 7 protein-coding 13-PTNLD9-TUMOR_peak_7346 chr10 50809950 50810053 + 9.47328 NA Intergenic MIR|SINE|MIR -7140 NM_020984 1103 Hs.302002 NM_020549 HPRD:07510 CHAT CHOACTASE|CMS1A|CMS1A2 choline O-acetyltransferase protein-coding 13-PTNLD9-TUMOR_peak_13166 chr12 65127781 65127949 + 9.47328 NA intron (NM_002076, intron 9 of 13) intron (NM_002076, intron 9 of 13) 25361 NM_002076 2799 Hs.334534 NM_002076 HPRD:09637 GNS G6S glucosamine (N-acetyl)-6-sulfatase protein-coding 13-PTNLD9-TUMOR_peak_10661 chr11 75367608 75367751 + 9.47328 NA intron (NM_033063, intron 1 of 3) intron (NM_033063, intron 1 of 3) 11800 NM_207577 4135 Hs.585540 NM_033063 HPRD:15989 MAP6 MTAP6|N-STOP|STOP microtubule-associated protein 6 protein-coding 13-PTNLD9-TUMOR_peak_33396 chr22 43523609 43523816 + 9.47328 NA exon (NM_001197, exon 3 of 5) exon (NM_001197, exon 3 of 5) 15691 NM_173467 27349 Hs.349111 NM_014507 HPRD:14786 MCAT FASN2C|MCT|MT|NET62|fabD malonyl CoA:ACP acyltransferase (mitochondrial) protein-coding 13-PTNLD9-TUMOR_peak_53328 chr9 44227324 44227499 + 9.47328 NA Intergenic CpG -157174 NR_121564 101927827 Hs.738704 NR_121564 ENSG00000229311 LOC101927827 - uncharacterized LOC101927827 ncRNA 13-PTNLD9-TUMOR_peak_34782 chr3 58563067 58563457 + 9.47328 NA 5' UTR (NM_007177, exon 1 of 5) 5' UTR (NM_007177, exon 1 of 5) 229 NM_001076778 11170 Hs.506357 NM_007177 HPRD:09753 FAM107A DRR1|TU3A family with sequence similarity 107, member A protein-coding 13-PTNLD9-TUMOR_peak_838 chr1 28261394 28261581 + 9.47328 NA promoter-TSS (NM_001009568) promoter-TSS (NM_001009568) -17 NM_014474 27293 Hs.123659 NM_014474 HPRD:15405 SMPDL3B ASML3B sphingomyelin phosphodiesterase, acid-like 3B protein-coding 13-PTNLD9-TUMOR_peak_45244 chr6 47624009 47624263 + 9.47328 NA promoter-TSS (NM_153839) promoter-TSS (NM_153839) -190 NM_153839 222611 Hs.724860 NM_153839 HPRD:17055 GPR111 PGR20|hGPCR35 G protein-coupled receptor 111 protein-coding 13-PTNLD9-TUMOR_peak_37166 chr3 188988188 188988359 + 9.46899 NA intron (NM_198485, intron 4 of 5) intron (NM_198485, intron 4 of 5) -29890 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_48265 chr7 90209487 90209654 + 9.46564 NA Intergenic L2a|LINE|L2 -16106 NM_001287135 5218 Hs.258576 NM_012395 HPRD:15121 CDK14 PFTAIRE1|PFTK1 cyclin-dependent kinase 14 protein-coding 13-PTNLD9-TUMOR_peak_33504 chr22 50342668 50343015 + 9.46395 NA Intergenic Intergenic -11302 NM_001001852 415116 Hs.530381 NM_001001852 HPRD:15137 PIM3 pim-3 Pim-3 proto-oncogene, serine/threonine kinase protein-coding 13-PTNLD9-TUMOR_peak_49544 chr7 148224794 148224958 + 9.46395 NA Intergenic MER66C|LTR|ERV1 -62781 NM_145304 202865 Hs.352212 NM_145304 HPRD:12921 C7orf33 - chromosome 7 open reading frame 33 protein-coding 13-PTNLD9-TUMOR_peak_29825 chr2 219151955 219152147 + 9.46395 NA intron (NM_022152, intron 1 of 11) intron (NM_022152, intron 1 of 11) 5229 NM_022152 64114 Hs.591605 NM_022152 HPRD:17884 TMBIM1 LFG3|MST100|MSTP100|RECS1 transmembrane BAX inhibitor motif containing 1 protein-coding 13-PTNLD9-TUMOR_peak_48036 chr7 75929642 75929793 + 9.45737 NA Intergenic Tigger3a|DNA|TcMar-Tigger -2158 NM_001540 3315 Hs.520973 NM_001540 HPRD:09076 HSPB1 CMT2F|HEL-S-102|HMN2B|HS.76067|HSP27|HSP28|Hsp25|SRP27 heat shock 27kDa protein 1 protein-coding 13-PTNLD9-TUMOR_peak_51259 chr8 87403980 87404130 + 9.45386 NA intron (NM_007013, intron 5 of 24) MER67B|LTR|ERV1 49061 NM_007013 11059 Hs.655189 NM_007013 HPRD:03811 WWP1 AIP5|Tiul1|hSDRP1 WW domain containing E3 ubiquitin protein ligase 1 protein-coding 13-PTNLD9-TUMOR_peak_34919 chr3 69435312 69435441 + 9.45386 NA promoter-TSS (NM_015123) promoter-TSS (NM_015123) 79 NM_015123 23150 Hs.371681 NM_015123 ENSG00000114541 FRMD4B 6030440G05Rik|GRSP1 FERM domain containing 4B protein-coding 13-PTNLD9-TUMOR_peak_52870 chr9 20559623 20559813 + 9.45386 NA intron (NM_001286691, intron 2 of 10) intron (NM_001286691, intron 2 of 10) -57378 NR_039685 100616441 NR_039685 MIR4474 - microRNA 4474 ncRNA 13-PTNLD9-TUMOR_peak_2105 chr1 66781461 66781624 + 9.45386 NA intron (NM_001297440, intron 6 of 15) intron (NM_001297440, intron 6 of 15) -16249 NM_001037339 5142 Hs.198072 NM_002600 HPRD:02528 PDE4B DPDE4|PDEIVB phosphodiesterase 4B, cAMP-specific protein-coding 13-PTNLD9-TUMOR_peak_4051 chr1 159768749 159768930 + 9.45386 NA Intergenic Intergenic -1462 NM_001284217 343413 Hs.196955 NM_001004310 HPRD:14177 FCRL6 FcRH6 Fc receptor-like 6 protein-coding 13-PTNLD9-TUMOR_peak_9584 chr11 39269190 39269490 + 9.45386 NA Intergenic Intergenic 598932 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 13-PTNLD9-TUMOR_peak_12413 chr12 29690368 29690526 + 9.45386 NA intron (NM_175861, intron 10 of 17) intron (NM_175861, intron 10 of 17) -39828 NM_183378 341350 Hs.674588 NM_183378 HPRD:07138 OVCH1 OVCH ovochymase 1 protein-coding 13-PTNLD9-TUMOR_peak_35278 chr3 107872611 107872852 + 9.45386 NA Intergenic Intergenic 28063 NR_110028 101929623 Hs.570653 NR_110028 LINC01215 - long intergenic non-protein coding RNA 1215 ncRNA 13-PTNLD9-TUMOR_peak_43265 chr5 178069427 178069791 + 9.45386 NA Intergenic MER70A|LTR|ERVL -15555 NM_020666 57396 Hs.406557 NM_020666 HPRD:12140 CLK4 - CDC-like kinase 4 protein-coding 13-PTNLD9-TUMOR_peak_9850 chr11 55161767 55161889 + 9.45386 NA Intergenic L1PA4|LINE|L1 26468 NM_001005275 81328 Hs.554529 NM_001005275 HPRD:14958 OR4A15 OR11-118 olfactory receptor, family 4, subfamily A, member 15 protein-coding 13-PTNLD9-TUMOR_peak_46953 chr7 17672748 17672960 + 9.45386 NA Intergenic Intergenic -74321 NR_110013 101927630 Hs.583400 NR_110013 LOC101927630 - uncharacterized LOC101927630 ncRNA 13-PTNLD9-TUMOR_peak_35231 chr3 105327624 105327770 + 9.45386 NA Intergenic LTR1C|LTR|ERV1 242140 NM_001243280 214 Hs.591293 NM_001627 HPRD:03389 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 13-PTNLD9-TUMOR_peak_14758 chr13 50432401 50432592 + 9.45386 NA Intergenic Intergenic -32049 NR_003268 220429 Hs.448219 NR_003268 ENSG00000181358 CTAGE10P - CTAGE family, member 10, pseudogene pseudo 13-PTNLD9-TUMOR_peak_44107 chr6 23963466 23963756 + 9.45386 NA Intergenic Intergenic -162803 NM_080723 140767 Hs.726270 NM_080723 HPRD:18285 NRSN1 VMP|p24 neurensin 1 protein-coding 13-PTNLD9-TUMOR_peak_53924 chr9 91434955 91435101 + 9.45386 NA Intergenic Intergenic -74208 NR_036252 100423015 NR_036252 miRBase:MI0015898 MIR4289 - microRNA 4289 ncRNA 13-PTNLD9-TUMOR_peak_10574 chr11 72929315 72929628 + 9.45386 NA promoter-TSS (NM_176071) promoter-TSS (NM_176071) -31 NM_176071 5029 Hs.339 NM_002564 HPRD:02499 P2RY2 HP2U|P2RU1|P2U|P2U1|P2UR|P2Y2|P2Y2R purinergic receptor P2Y, G-protein coupled, 2 protein-coding 13-PTNLD9-TUMOR_peak_22658 chr18 13369996 13370233 + 9.45386 NA intron (NM_181482, intron 2 of 5) intron (NM_181482, intron 2 of 5) 57419 NR_040031 100288122 Hs.646264 NR_040031 ENSG00000267690 LDLRAD4-AS1 - LDLRAD4 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_37434 chr3 196336287 196336451 + 9.45386 NA Intergenic Intergenic -30287 NM_198565 375387 Hs.702186 NM_198565 HPRD:17452 NRROS GARPL1|LRRC33|UNQ3030 negative regulator of reactive oxygen species protein-coding 13-PTNLD9-TUMOR_peak_36493 chr3 156361717 156361822 + 9.45386 NA Intergenic Intergenic -30436 NM_015508 25976 Hs.744050 NM_015508 HPRD:18192 TIPARP ARTD14|PARP7|pART14 TCDD-inducible poly(ADP-ribose) polymerase protein-coding 13-PTNLD9-TUMOR_peak_5893 chr1 234539319 234539424 + 9.45386 NA intron (NM_005646, intron 24 of 29) intron (NM_005646, intron 24 of 29) 29942 NM_001012985 388753 Hs.23198 NM_001012985 HPRD:18535 COA6 C1orf31 cytochrome c oxidase assembly factor 6 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_39337 chr4 129689640 129689831 + 9.45386 NA Intergenic Intergenic -41043 NM_199320 79960 Hs.12420 NM_024900 HPRD:10151 JADE1 PHF17 jade family PHD finger 1 protein-coding 13-PTNLD9-TUMOR_peak_17133 chr15 42500278 42500651 + 9.45386 NA promoter-TSS (NM_001301138) promoter-TSS (NM_001301138) 60 NM_001301138 23339 Hs.88025 NM_015289 HPRD:10300 VPS39 TLP|VAM6|hVam6p vacuolar protein sorting 39 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_29793 chr2 217419544 217419773 + 9.45386 NA Intergenic Intergenic 52003 NR_110392 101928232 Hs.694592 NR_110392 ENSG00000224391 LINC01280 - long intergenic non-protein coding RNA 1280 ncRNA 13-PTNLD9-TUMOR_peak_45036 chr6 42627779 42628034 + 9.45056 NA intron (NM_015255, intron 30 of 46) intron (NM_015255, intron 30 of 46) 62452 NM_000322 5961 Hs.654489 NM_000322 HPRD:01553 PRPH2 AOFMD|AVMD|CACD2|DS|PRPH|RDS|RP7|TSPAN22|rd2 peripherin 2 (retinal degeneration, slow) protein-coding 13-PTNLD9-TUMOR_peak_31092 chr20 40835368 40835475 + 9.45056 NA intron (NM_133170, intron 16 of 31) L1PA2|LINE|L1 -478702 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 13-PTNLD9-TUMOR_peak_965 chr1 32211312 32211456 + 9.45056 NA intron (NM_001294335, intron 4 of 32) intron (NM_001294335, intron 4 of 32) 12952 NR_036216 100423028 NR_036216 MIR4254 - microRNA 4254 ncRNA 13-PTNLD9-TUMOR_peak_35367 chr3 112051940 112052099 + 9.45056 NA 5' UTR (NM_005944, exon 1 of 6) 5' UTR (NM_005944, exon 1 of 6) 103 NM_005944 4345 Hs.79015 NM_005944 ENSG00000091972 CD200 MOX1|MOX2|MRC|OX-2 CD200 molecule protein-coding 13-PTNLD9-TUMOR_peak_52248 chr8 138148310 138148537 + 9.45056 NA Intergenic Intergenic 277408 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 13-PTNLD9-TUMOR_peak_50936 chr8 54522514 54522613 + 9.45056 NA Intergenic L1PA3|LINE|L1 233039 NM_213620 51606 Hs.491737 NM_015941 HPRD:10591 ATP6V1H MSTP042|NBP1|SFD|SFDalpha|SFDbeta|VMA13 ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H protein-coding 13-PTNLD9-TUMOR_peak_31497 chr20 50149918 50150094 + 9.45056 NA intron (NM_001258292, intron 1 of 9) intron (NM_001258292, intron 1 of 9) 9252 NM_001258297 4773 Hs.744148 NM_012340 HPRD:02730 NFATC2 NFAT1|NFATP nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 protein-coding 13-PTNLD9-TUMOR_peak_55064 chr9 140016082 140016207 + 9.45056 NA Intergenic LTR13_|LTR|ERVK -6949 NM_013379 29952 Hs.37916 NM_013379 HPRD:07634 DPP7 DPP2|DPPII|QPP dipeptidyl-peptidase 7 protein-coding 13-PTNLD9-TUMOR_peak_12694 chr12 48974690 48974952 + 9.45056 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -10992 NM_002289 3906 Hs.72938 NM_002289 HPRD:01024 LALBA - lactalbumin, alpha- protein-coding 13-PTNLD9-TUMOR_peak_13327 chr12 71706727 71707113 + 9.45056 NA Intergenic Intergenic -126630 NM_003667 8549 Hs.658889 NM_003667 HPRD:05979 LGR5 FEX|GPR49|GPR67|GRP49|HG38 leucine-rich repeat containing G protein-coupled receptor 5 protein-coding 13-PTNLD9-TUMOR_peak_10846 chr11 86407144 86407307 + 9.45056 NA Intergenic Intergenic -23547 NM_001161586 10873 Hs.199743 NM_006680 HPRD:06862 ME3 NADP-ME malic enzyme 3, NADP(+)-dependent, mitochondrial protein-coding 13-PTNLD9-TUMOR_peak_1080 chr1 35544918 35545200 + 9.45056 NA promoter-TSS (NM_024772) promoter-TSS (NM_024772) 95 NM_001289090 79830 Hs.471243 NM_024772 HPRD:15739 ZMYM1 MYM zinc finger, MYM-type 1 protein-coding 13-PTNLD9-TUMOR_peak_21255 chr17 44357132 44357411 + 9.44980 NA Intergenic HAL1|LINE|L1 -15226 NM_014834 9884 Hs.579108 NM_014834 HPRD:14303 LRRC37A LRRC37 leucine rich repeat containing 37A protein-coding 13-PTNLD9-TUMOR_peak_46689 chr7 1595072 1595239 + 9.44348 NA intron (NM_001097620, intron 1 of 8) intron (NM_001097620, intron 1 of 8) 911 NM_001097620 202915 Hs.592174 NM_152689 HPRD:14716 TMEM184A - transmembrane protein 184A protein-coding 13-PTNLD9-TUMOR_peak_32555 chr21 46301540 46301775 + 9.44332 NA Intergenic Intergenic -7839 NR_104597 754 Hs.474010 NM_004339 HPRD:04807 PTTG1IP C21orf1|C21orf3|PBF pituitary tumor-transforming 1 interacting protein protein-coding 13-PTNLD9-TUMOR_peak_38695 chr4 80994219 80994434 + 9.44194 NA 5' UTR (NM_001145794, exon 1 of 16) 5' UTR (NM_001145794, exon 1 of 16) 151 NM_001286781 118429 Hs.162963 NM_058172 HPRD:07452 ANTXR2 CMG-2|CMG2|HFS|ISH|JHF anthrax toxin receptor 2 protein-coding 13-PTNLD9-TUMOR_peak_29688 chr2 208497990 208498178 + 9.44194 NA Intergenic Intergenic -8111 NM_001127395 151194 Hs.664764 NM_145280 HPRD:14090 METTL21A FAM119A|HCA557b|HSPA-KMT methyltransferase like 21A protein-coding 13-PTNLD9-TUMOR_peak_7693 chr10 73515111 73515234 + 9.44194 NA exon (NM_022153, exon 4 of 7) exon (NM_022153, exon 4 of 7) -17591 NM_001168390 414152 Hs.568788 NM_001164375 ENSG00000214688 C10orf105 - chromosome 10 open reading frame 105 protein-coding 13-PTNLD9-TUMOR_peak_14082 chr12 121652870 121653019 + 9.44194 NA intron (NR_046373, intron 1 of 10) MER63B|DNA|hAT-Blackjack 5280 NM_002560 5025 Hs.321709 NM_002560 HPRD:09017 P2RX4 P2X4|P2X4R purinergic receptor P2X, ligand-gated ion channel, 4 protein-coding 13-PTNLD9-TUMOR_peak_37685 chr4 3824054 3824439 + 9.44194 NA Intergenic MLT1D|LTR|ERVL-MaLR 55950 NM_000683 152 Hs.123022 NM_000683 HPRD:00085 ADRA2C ADRA2L2|ADRA2RL2|ADRARL2|ALPHA2CAR adrenoceptor alpha 2C protein-coding 13-PTNLD9-TUMOR_peak_20283 chr17 3571258 3571514 + 9.44194 NA promoter-TSS (NM_031298) promoter-TSS (NM_031298) 587 NM_014604 30851 Hs.12956 NM_014604 HPRD:18160 TAX1BP3 TIP-1 Tax1 (human T-cell leukemia virus type I) binding protein 3 protein-coding 13-PTNLD9-TUMOR_peak_45322 chr6 52977784 52978055 + 9.44194 NA Intergenic Intergenic 35705 NM_003643 8521 Hs.28346 NM_003643 HPRD:04757 GCM1 GCMA|hGCMa glial cells missing homolog 1 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_29025 chr2 169931049 169931310 + 9.43605 NA intron (NM_001142270, intron 2 of 5) intron (NM_001142270, intron 2 of 5) 2094 NM_001142270 10170 Hs.179608 NM_005771 HPRD:09916 DHRS9 3-alpha-HSD|3ALPHA-HSD|RDH-E2|RDH-TBE|RDH15|RDHL|RDHTBE|RETSDR8|SDR9C4 dehydrogenase/reductase (SDR family) member 9 protein-coding 13-PTNLD9-TUMOR_peak_2240 chr1 78224838 78224990 + 9.43481 NA intron (NM_015017, intron 1 of 24) CpG 650 NM_015017 23032 Hs.480597 NM_015017 HPRD:10297 USP33 VDU1 ubiquitin specific peptidase 33 protein-coding 13-PTNLD9-TUMOR_peak_23485 chr18 74331341 74331649 + 9.43481 NA promoter-TSS (NR_120419) promoter-TSS (NR_120419) -239 NR_120419 400660 Hs.131718 NR_120419 LINC00683 - long intergenic non-protein coding RNA 683 ncRNA 13-PTNLD9-TUMOR_peak_22961 chr18 35065420 35065601 + 9.43481 NA exon (NM_001025089, exon 2 of 12) exon (NM_001025089, exon 2 of 12) 80490 NM_001025089 56853 Hs.435976 NM_020180 HPRD:12534 CELF4 BRUNOL-4|BRUNOL4 CUGBP, Elav-like family member 4 protein-coding 13-PTNLD9-TUMOR_peak_22743 chr18 20046169 20046300 + 9.43481 NA Intergenic Intergenic -48356 NM_172241 64693 Hs.406709 NM_022663 HPRD:16395 CTAGE1 CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2 cutaneous T-cell lymphoma-associated antigen 1 protein-coding 13-PTNLD9-TUMOR_peak_1173 chr1 37920623 37920891 + 9.43481 NA non-coding (NR_038842, exon 3 of 3) non-coding (NR_038842, exon 3 of 3) 19287 NR_038842 728431 Hs.380738 NR_038842 ENSG00000233621 LINC01137 - long intergenic non-protein coding RNA 1137 ncRNA 13-PTNLD9-TUMOR_peak_3315 chr1 145457343 145457437 + 9.43334 NA intron (NM_032305, intron 5 of 7) intron (NM_032305, intron 5 of 7) 12997 NM_032305 84265 Hs.591456 NM_032305 HPRD:14546 POLR3GL RPC32HOM|flj32422 polymerase (RNA) III (DNA directed) polypeptide G (32kD)-like protein-coding 13-PTNLD9-TUMOR_peak_37083 chr3 186649098 186649205 + 9.43211 NA intron (NM_173216, intron 1 of 7) intron (NM_173216, intron 1 of 7) 836 NM_173217 6480 Hs.207459 NM_003032 HPRD:00184 ST6GAL1 SIAT1|ST6GalI|ST6N ST6 beta-galactosamide alpha-2,6-sialyltranferase 1 protein-coding 13-PTNLD9-TUMOR_peak_13082 chr12 59991331 59991562 + 9.43211 NA intron (NM_001270622, intron 1 of 5) intron (NM_001270622, intron 1 of 5) 1625 NM_001270623 9194 Hs.88156 NM_004731 HPRD:06791 SLC16A7 MCT2 solute carrier family 16 (monocarboxylate transporter), member 7 protein-coding 13-PTNLD9-TUMOR_peak_52202 chr8 135173274 135173421 + 9.42205 NA Intergenic Intergenic 274608 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 13-PTNLD9-TUMOR_peak_4612 chr1 180554724 180554956 + 9.42205 NA Intergenic Intergenic 26730 NR_125716 148756 NR_125716 OVAAL LINC01131|OVAL ovarian adenocarcinoma amplified long non-coding RNA ncRNA 13-PTNLD9-TUMOR_peak_45346 chr6 53658955 53659354 + 9.42205 NA promoter-TSS (NM_018214) promoter-TSS (NM_018214) -624 NM_018214 55227 Hs.606493 NM_018214 ENSG00000137269 LRRC1 LANO|dJ523E19.1 leucine rich repeat containing 1 protein-coding 13-PTNLD9-TUMOR_peak_43931 chr6 16131303 16131427 + 9.42205 NA intron (NM_013262, intron 2 of 6) intron (NM_013262, intron 2 of 6) 2048 NM_013262 29116 Hs.484738 NM_013262 HPRD:17621 MYLIP IDOL|MIR myosin regulatory light chain interacting protein protein-coding 13-PTNLD9-TUMOR_peak_3442 chr1 148527179 148527414 + 9.41120 NA intron (NR_104217, intron 2 of 17) intron (NR_104217, intron 2 of 17) -30892 NM_001170755 284565 Hs.523572 NM_173638 HPRD:14710 NBPF15 AB14|AG3|NBPF16 neuroblastoma breakpoint family, member 15 protein-coding 13-PTNLD9-TUMOR_peak_25948 chr2 1711623 1711914 + 9.40729 NA intron (NM_012293, intron 1 of 22) intron (NM_012293, intron 1 of 22) 36551 NM_012293 7837 Hs.332197 NM_012293 ENSG00000130508 PXDN COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO peroxidasin homolog (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_33549 chr3 2002279 2002457 + 9.40729 NA Intergenic Intergenic -138182 NM_175607 152330 Hs.298705 NM_175607 HPRD:16239 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 13-PTNLD9-TUMOR_peak_49162 chr7 132424448 132424588 + 9.40729 NA Intergenic Intergenic 90965 NR_046323 286023 Hs.671875 NM_173682 HPRD:08276 FLJ40288 - uncharacterized FLJ40288 ncRNA 13-PTNLD9-TUMOR_peak_26085 chr2 10237636 10237756 + 9.40729 NA Intergenic Intergenic -17158 NM_001037160 192668 Hs.27092 NM_001037160 HPRD:18744 CYS1 - cystin 1 protein-coding 13-PTNLD9-TUMOR_peak_36736 chr3 171961881 171962061 + 9.40729 NA intron (NM_001135095, intron 4 of 25) L2c|LINE|L2 203627 NM_001135095 64778 Hs.744888 NM_022763 HPRD:10943 FNDC3B FAD104|PRO4979|YVTM2421 fibronectin type III domain containing 3B protein-coding 13-PTNLD9-TUMOR_peak_8012 chr10 93349115 93349330 + 9.40729 NA intron (NR_024467, intron 1 of 4) intron (NR_024467, intron 1 of 4) 21995 NR_024467 100188947 Hs.535293 NR_024467 HECTD2-AS1 - HECTD2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_49758 chr7 153557770 153558044 + 9.40729 NA Intergenic Intergenic -26275 NM_001039350 1804 Hs.490684 NM_001936 HPRD:00525 DPP6 DPPX|VF2 dipeptidyl-peptidase 6 protein-coding 13-PTNLD9-TUMOR_peak_6740 chr10 26868341 26868454 + 9.40729 NA Intergenic Intergenic -10397 NR_026793 645528 Hs.634511 NR_026793 ENSG00000233261 LINC00264 C10orf50|NCRNA00264|bA128B16.2 long intergenic non-protein coding RNA 264 ncRNA 13-PTNLD9-TUMOR_peak_46093 chr6 134838326 134838721 + 9.40729 NA Intergenic Intergenic 78995 NR_038218 154092 Hs.223718 NR_038216 LINC01010 - long intergenic non-protein coding RNA 1010 ncRNA 13-PTNLD9-TUMOR_peak_18379 chr16 4588535 4588917 + 9.40729 NA promoter-TSS (NM_013399) promoter-TSS (NM_013399) 90 NM_001199055 29965 Hs.654653 NM_013399 HPRD:12676 CDIP1 C16orf5|CDIP|I1|LITAFL cell death-inducing p53 target 1 protein-coding 13-PTNLD9-TUMOR_peak_49185 chr7 134165590 134165719 + 9.40729 NA Intergenic Intergenic -21766 NM_001628 231 Hs.521212 NM_001628 HPRD:00071 AKR1B1 ADR|ALDR1|ALR2|AR aldo-keto reductase family 1, member B1 (aldose reductase) protein-coding 13-PTNLD9-TUMOR_peak_24871 chr19 38494611 38494717 + 9.40729 NA intron (NM_015073, intron 1 of 21) intron (NM_015073, intron 1 of 21) 96803 NM_015073 23094 Hs.655502 NM_015073 HPRD:18755 SIPA1L3 SPAL3 signal-induced proliferation-associated 1 like 3 protein-coding 13-PTNLD9-TUMOR_peak_48349 chr7 94536872 94537046 + 9.40729 NA promoter-TSS (NM_001166160) promoter-TSS (NM_001166160) 10 NM_017650 55607 Hs.21816 NM_017650 ENSG00000158528 PPP1R9A NRB1|NRBI|Neurabin-I protein phosphatase 1, regulatory subunit 9A protein-coding 13-PTNLD9-TUMOR_peak_22193 chr17 76983910 76984051 + 9.40729 NA Intergenic MER41A|LTR|ERV1 -7919 NM_005567 3959 Hs.514535 NM_005567 HPRD:02796 LGALS3BP 90K|BTBD17B|CyCAP|M2BP|MAC-2-BP|TANGO10B|gp90 lectin, galactoside-binding, soluble, 3 binding protein protein-coding 13-PTNLD9-TUMOR_peak_9531 chr11 35121576 35121848 + 9.40729 NA Intergenic Intergenic 37867 NR_120528 100507144 Hs.673491 NR_120528 ENSG00000255521 LOC100507144 - uncharacterized LOC100507144 ncRNA 13-PTNLD9-TUMOR_peak_21950 chr17 72829747 72829915 + 9.40729 NA intron (NM_017728, intron 9 of 9) intron (NM_017728, intron 9 of 9) 26176 NR_103735 2905 Hs.436980 NM_000835 HPRD:00699 GRIN2C GluN2C|NMDAR2C|NR2C glutamate receptor, ionotropic, N-methyl D-aspartate 2C protein-coding 13-PTNLD9-TUMOR_peak_11871 chr12 4252114 4252389 + 9.40729 NA Intergenic Intergenic -130651 NM_001759 894 Hs.376071 NM_001759 HPRD:00451 CCND2 KIAK0002 cyclin D2 protein-coding 13-PTNLD9-TUMOR_peak_19389 chr16 55787134 55787306 + 9.40729 NA Intergenic MLT1A|LTR|ERVL-MaLR -7291 NR_003276 51716 Hs.721645 NM_016280 HPRD:07009 CES1P1 CES1A2|CES1A3|CES4|CESR|PCE-3 carboxylesterase 1 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_55848 chrX 49161783 49162194 + 9.40729 NA exon (NM_001098413, exon 3 of 5) exon (NM_001098413, exon 3 of 5) 1863 NM_001098413 102724473 NM_001098413 ENSG00000215274 GAGE10 GAGE-10 G antigen 10 protein-coding 13-PTNLD9-TUMOR_peak_56440 chrX 123096947 123097120 + 9.40729 NA intron (NM_001282418, intron 2 of 33) intron (NM_001282418, intron 2 of 33) 1477 NM_006603 10735 Hs.496710 NM_006603 HPRD:05077 STAG2 SA-2|SA2|SCC3B|bA517O1.1 stromal antigen 2 protein-coding 13-PTNLD9-TUMOR_peak_32526 chr21 45604804 45604908 + 9.40729 NA Intergenic Intergenic 51362 NM_004649 8209 Hs.413482 NM_004649 HPRD:09044 C21orf33 ES1|GT335|HES1|KNPH|KNPI chromosome 21 open reading frame 33 protein-coding 13-PTNLD9-TUMOR_peak_26071 chr2 9970519 9970704 + 9.40729 NA Intergenic Intergenic -12960 NM_005680 9014 Hs.584833 NM_005680 HPRD:05363 TAF1B MGC:9349|RAF1B|RAFI63|SL1|TAFI63 TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa protein-coding 13-PTNLD9-TUMOR_peak_49629 chr7 150595697 150595816 + 9.40661 NA Intergenic Intergenic 46191 NM_001091 26 Hs.647097 NM_001091 HPRD:00088 AOC1 ABP|ABP1|DAO|DAO1|KAO amine oxidase, copper containing 1 protein-coding 13-PTNLD9-TUMOR_peak_22842 chr18 25419190 25419376 + 9.40661 NA Intergenic MLT1A0|LTR|ERVL-MaLR 338162 NM_001792 1000 Hs.464829 NM_001792 HPRD:00226 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2, type 1, N-cadherin (neuronal) protein-coding 13-PTNLD9-TUMOR_peak_47943 chr7 73894777 73894997 + 9.40642 NA intron (NM_005685, intron 1 of 26) CpG 26767 NM_001199207 9569 Hs.647056 NM_005685 HPRD:08379 GTF2IRD1 BEN|CREAM1|GTF3|MUSTRD1|RBAP2|WBS|WBSCR11|WBSCR12|hMusTRD1alpha1 GTF2I repeat domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_38185 chr4 38162195 38162373 + 9.40642 NA Intergenic MLT1I|LTR|ERVL-MaLR 40709 NM_001253915 23216 Hs.176503 NM_015173 HPRD:18161 TBC1D1 TBC|TBC1 TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1 protein-coding 13-PTNLD9-TUMOR_peak_49569 chr7 148844450 148844615 + 9.40642 NA promoter-TSS (NM_170686) promoter-TSS (NM_170686) -28 NM_170686 57541 Hs.632032 NM_020781 HPRD:18336 ZNF398 P51|P71|ZER6 zinc finger protein 398 protein-coding 13-PTNLD9-TUMOR_peak_41118 chr5 67611698 67612107 + 9.40642 NA Intergenic Intergenic 23506 NM_001242466 5295 Hs.132225 NM_181504 HPRD:01381 PIK3R1 AGM7|GRB1|p85|p85-ALPHA phosphoinositide-3-kinase, regulatory subunit 1 (alpha) protein-coding 13-PTNLD9-TUMOR_peak_56816 chrY 9943700 9944058 + 9.40642 NA Intergenic L1M1|LINE|L1 195472 NR_001540 252955 Hs.522846 NR_001540 ENSG00000239225 TTTY23 NCRNA00148|TTTY23B testis-specific transcript, Y-linked 23 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_1197 chr1 38273308 38273471 + 9.40642 NA promoter-TSS (NM_001142726) promoter-TSS (NM_001142726) -84 NM_198446 127687 Hs.532749 NM_198446 HPRD:13508 C1orf122 ALAESM chromosome 1 open reading frame 122 protein-coding 13-PTNLD9-TUMOR_peak_4404 chr1 172328021 172328184 + 9.40617 NA intron (NM_015569, intron 17 of 20) intron (NM_015569, intron 17 of 20) -61726 NM_139240 92346 Hs.517991 NM_139240 HPRD:14291 C1orf105 - chromosome 1 open reading frame 105 protein-coding 13-PTNLD9-TUMOR_peak_55513 chrX 9319913 9320149 + 9.40617 NA Intergenic Intergenic -111304 NM_001139468 6907 Hs.495656 NM_005647 HPRD:02183 TBL1X EBI|SMAP55|TBL1 transducin (beta)-like 1X-linked protein-coding 13-PTNLD9-TUMOR_peak_20553 chr17 17315779 17315926 + 9.40617 NA Intergenic L1ME4a|LINE|L1 -64448 NM_018019 55090 Hs.244595 NM_018019 HPRD:14383 MED9 MED25 mediator complex subunit 9 protein-coding 13-PTNLD9-TUMOR_peak_42745 chr5 154158793 154158952 + 9.40617 NA intron (NM_015315, intron 1 of 18) intron (NM_015315, intron 1 of 18) 66410 NM_015315 23367 Hs.292078 NM_015315 HPRD:11225 LARP1 LARP La ribonucleoprotein domain family, member 1 protein-coding 13-PTNLD9-TUMOR_peak_5232 chr1 205882730 205882834 + 9.40617 NA 3' UTR (NM_052934, exon 21 of 21) 3' UTR (NM_052934, exon 21 of 21) 29806 NM_134325 115019 Hs.164073 NM_052934 HPRD:12242 SLC26A9 - solute carrier family 26 (anion exchanger), member 9 protein-coding 13-PTNLD9-TUMOR_peak_41835 chr5 118638748 118638991 + 9.40617 NA intron (NM_001077654, intron 1 of 1) intron (NM_001077654, intron 1 of 1) -30001 NM_001286814 25816 Hs.618488 NM_014350 TNFAIP8 GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2 tumor necrosis factor, alpha-induced protein 8 protein-coding 13-PTNLD9-TUMOR_peak_53923 chr9 91416432 91416684 + 9.40617 NA Intergenic MLT1G1|LTR|ERVL-MaLR -55738 NR_036252 100423015 NR_036252 miRBase:MI0015898 MIR4289 - microRNA 4289 ncRNA 13-PTNLD9-TUMOR_peak_969 chr1 32238110 32238255 + 9.40617 NA Intergenic CpG -8518 NM_001294335 576 Hs.524138 NM_001703 HPRD:04063 BAI2 - brain-specific angiogenesis inhibitor 2 protein-coding 13-PTNLD9-TUMOR_peak_56544 chrX 135436032 135436153 + 9.40617 NA intron (NM_153834, intron 8 of 25) intron (NM_153834, intron 8 of 25) 52970 NM_153834 139378 Hs.381354 NM_153834 HPRD:06578 GPR112 PGR17|RP1-299I16 G protein-coupled receptor 112 protein-coding 13-PTNLD9-TUMOR_peak_46330 chr6 151767456 151767597 + 9.40617 NA intron (NM_017909, intron 1 of 11) AluJb|SINE|Alu 5790 NM_017909 55005 Hs.486835 NM_017909 HPRD:09858 RMND1 C6orf96|COXPD11|RMD1|bA351K16|bA351K16.3 required for meiotic nuclear division 1 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_12209 chr12 13408782 13408933 + 9.40617 NA Intergenic Intergenic 59255 NM_001423 2012 Hs.719042 NM_001423 HPRD:11892 EMP1 CL-20|EMP-1|TMP epithelial membrane protein 1 protein-coding 13-PTNLD9-TUMOR_peak_34986 chr3 73304779 73305089 + 9.40617 NA Intergenic Intergenic 194124 NM_018029 55096 Hs.658858 NM_018029 HPRD:07654 EBLN2 EBLN-2 endogenous Bornavirus-like nucleoprotein 2 protein-coding 13-PTNLD9-TUMOR_peak_2613 chr1 99368959 99369070 + 9.40617 NA intron (NM_001010861, intron 5 of 5) intron (NM_001010861, intron 5 of 5) -100818 NR_033940 100129620 Hs.588631 NR_033940 ENSG00000232825 LOC100129620 - uncharacterized LOC100129620 ncRNA 13-PTNLD9-TUMOR_peak_51837 chr8 124642673 124642847 + 9.40617 NA Intergenic Intergenic 22430 NM_001081675 340359 Hs.450252 NM_001081675 ENSG00000175946 KLHL38 C8ORFK36 kelch-like family member 38 protein-coding 13-PTNLD9-TUMOR_peak_13794 chr12 110109445 110109584 + 9.40617 NA Intergenic MLT1F2|LTR|ERVL-MaLR -42673 NM_032829 84915 Hs.661785 NM_032829 HPRD:07868 FAM222A C12orf34 family with sequence similarity 222, member A protein-coding 13-PTNLD9-TUMOR_peak_17570 chr15 70767356 70767654 + 9.40617 NA Intergenic Intergenic 227115 NM_001008224 55075 Hs.108049 NM_018003 HPRD:11657 UACA NUCLING uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding 13-PTNLD9-TUMOR_peak_23255 chr18 54877955 54878232 + 9.40617 NA Intergenic Intergenic 63800 NM_001257964 284257 Hs.127882 NM_001257964 ENSG00000228075 BOD1L2 BOD1P|FAM44C biorientation of chromosomes in cell division 1-like 2 protein-coding 13-PTNLD9-TUMOR_peak_25501 chr19 51600737 51600883 + 9.40617 NA TTS (NM_145232) TTS (NM_145232) 10837 NM_145232 90353 Hs.148425 NM_145232 HPRD:14270 CTU1 ATPBD3|NCS6 cytosolic thiouridylase subunit 1 protein-coding 13-PTNLD9-TUMOR_peak_11283 chr11 114237736 114237894 + 9.40617 NA intron (NR_120567, intron 2 of 2) intron (NR_120567, intron 2 of 2) 12946 NR_120567 101928940 Hs.409846 NR_120567 ENSG00000256195 LOC101928940 - uncharacterized LOC101928940 ncRNA 13-PTNLD9-TUMOR_peak_28712 chr2 151329111 151329393 + 9.40617 NA intron (NM_005168, intron 4 of 5) L2c|LINE|L2 14957 NM_005168 390 Hs.6838 NM_005168 HPRD:04233 RND3 ARHE|Rho8|RhoE|memB Rho family GTPase 3 protein-coding 13-PTNLD9-TUMOR_peak_43996 chr6 17987995 17988425 + 9.39997 NA promoter-TSS (NM_022113) promoter-TSS (NM_022113) -356 NM_001243423 63971 Hs.94499 NM_022113 HPRD:09256 KIF13A RBKIN|bA500C11.2 kinesin family member 13A protein-coding 13-PTNLD9-TUMOR_peak_23218 chr18 51038278 51038392 + 9.39997 NA intron (NM_005215, intron 27 of 28) L1PA3|LINE|L1 -56482 NR_110798 102724651 Hs.123442 NR_110798 LOC102724651 - uncharacterized LOC102724651 ncRNA 13-PTNLD9-TUMOR_peak_41105 chr5 67069649 67069930 + 9.39997 NA Intergenic Intergenic -415915 NR_105003 102467655 Hs.544102 NR_105003 LOC102467655 - uncharacterized LOC102467655 ncRNA 13-PTNLD9-TUMOR_peak_19076 chr16 31463161 31463338 + 9.39997 NA Intergenic Intergenic -6345 NM_001288767 79798 Hs.732945 NM_024742 HPRD:07809 ARMC5 - armadillo repeat containing 5 protein-coding 13-PTNLD9-TUMOR_peak_31411 chr20 48768999 48769124 + 9.39997 NA intron (NR_027889, intron 1 of 6) intron (NR_027889, intron 1 of 6) 1274 NM_001162505 387521 Hs.744839 NM_199129 HPRD:17257 TMEM189 KUA transmembrane protein 189 protein-coding 13-PTNLD9-TUMOR_peak_15114 chr13 111000168 111000703 + 9.39997 NA intron (NM_001846, intron 3 of 47) intron (NM_001846, intron 3 of 47) 7130 NR_107040 102465872 NR_107040 MIR8073 hsa-mir-8073 microRNA 8073 ncRNA 13-PTNLD9-TUMOR_peak_34421 chr3 45858113 45858309 + 9.39643 NA Intergenic LTR75|LTR|ERVL -20176 NM_020208 54716 Hs.413095 NM_020208 HPRD:16128 SLC6A20 SIT1|XT3|Xtrp3 solute carrier family 6 (proline IMINO transporter), member 20 protein-coding 13-PTNLD9-TUMOR_peak_29003 chr2 168689400 168689530 + 9.39643 NA intron (NM_020981, intron 1 of 1) intron (NM_020981, intron 1 of 1) 14283 NM_020981 8708 Hs.735833 NM_020981 HPRD:04369 B3GALT1 beta3Gal-T1 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1 protein-coding 13-PTNLD9-TUMOR_peak_39474 chr4 141747447 141747731 + 9.39643 NA Intergenic L1PA5|LINE|L1 -70118 NM_015130 23158 Hs.480819 NM_015130 HPRD:11115 TBC1D9 MDR1 TBC1 domain family, member 9 (with GRAM domain) protein-coding 13-PTNLD9-TUMOR_peak_51959 chr8 127836780 127836966 + 9.39643 NA Intergenic (T)n|Simple_repeat|Simple_repeat -188526 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_33432 chr22 46084527 46084952 + 9.39643 NA intron (NM_001167621, intron 1 of 10) MamRep137|DNA|TcMar? 17061 NM_013236 25814 Hs.475125 NM_013236 HPRD:04624 ATXN10 E46L|HUMEEP|SCA10 ataxin 10 protein-coding 13-PTNLD9-TUMOR_peak_39524 chr4 144480553 144480693 + 9.39643 NA promoter-TSS (NR_003675) promoter-TSS (NR_003675) -2 NR_003675 441046 Hs.135705 NM_001011539 HPRD:17402 GUSBP5 GYPELOC441046 glucuronidase, beta pseudogene 5 pseudo 13-PTNLD9-TUMOR_peak_54673 chr9 124372137 124372307 + 9.39643 NA intron (NM_032552, intron 1 of 16) intron (NM_032552, intron 1 of 16) 42841 NM_032552 153090 Hs.522378 NM_032552 HPRD:09903 DAB2IP AF9Q34|AIP-1|AIP1|DIP1/2 DAB2 interacting protein protein-coding 13-PTNLD9-TUMOR_peak_15809 chr14 54720400 54720518 + 9.39643 NA Intergenic Intergenic -143214 NM_001130851 1033 Hs.84113 NM_005192 HPRD:00450 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin-dependent kinase inhibitor 3 protein-coding 13-PTNLD9-TUMOR_peak_25687 chr19 55904376 55904546 + 9.39643 NA Intergenic L2|LINE|L2 4912 NR_106863 102465483 NR_106863 MIR6805 hsa-mir-6805 microRNA 6805 ncRNA 13-PTNLD9-TUMOR_peak_6630 chr10 21462975 21463104 + 9.39643 NA promoter-TSS (NM_001173484) promoter-TSS (NM_001173484) 77 NM_213569 10529 Hs.5025 NM_006393 HPRD:10403 NEBL LASP2|LNEBL nebulette protein-coding 13-PTNLD9-TUMOR_peak_20995 chr17 38183329 38183489 + 9.39643 NA promoter-TSS (NR_106944) promoter-TSS (NR_106944) 489 NR_102369 101340251 NR_102369 SNORD124 - small nucleolar RNA, C/D box 124 snoRNA 13-PTNLD9-TUMOR_peak_45403 chr6 57337901 57338135 + 9.39643 NA intron (NM_000947, intron 7 of 14) intron (NM_000947, intron 7 of 14) 155603 NM_001282487 5558 Hs.654580 NM_000947 PRIM2 PRIM2A|p58 primase, DNA, polypeptide 2 (58kDa) protein-coding 13-PTNLD9-TUMOR_peak_34966 chr3 72641209 72641410 + 9.39643 NA Intergenic MER5B|DNA|hAT-Charlie -145535 NM_012234 23429 Hs.7910 NM_012234 RYBP AAP1|DEDAF|YEAF1 RING1 and YY1 binding protein protein-coding 13-PTNLD9-TUMOR_peak_1971 chr1 60138605 60138748 + 9.39643 NA intron (NM_001113411, intron 14 of 16) L2b|LINE|L2 60292 NR_039861 100616409 NR_039861 miRBase:MI0017345 MIR4711 - microRNA 4711 ncRNA 13-PTNLD9-TUMOR_peak_33463 chr22 46812489 46812813 + 9.39643 NA intron (NM_014246, intron 5 of 34) intron (NM_014246, intron 5 of 34) 81353 NM_001282783 55687 Hs.439524 NM_018006 HPRD:15571 TRMU MTO2|MTU1|TRMT|TRMT1|TRNT1 tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase protein-coding 13-PTNLD9-TUMOR_peak_26439 chr2 28817309 28817635 + 9.39643 NA intron (NM_001170585, intron 32 of 56) intron (NM_001170585, intron 32 of 56) 98534 NM_153021 151056 Hs.444933 NM_153021 HPRD:15141 PLB1 PLB|PLB/LIP|hPLB phospholipase B1 protein-coding 13-PTNLD9-TUMOR_peak_36830 chr3 177541909 177542059 + 9.39643 NA intron (NR_110826, intron 1 of 2) intron (NR_110826, intron 1 of 2) 7331 NR_110826 102724550 Hs.570526 NR_110826 LOC102724550 - uncharacterized LOC102724550 ncRNA 13-PTNLD9-TUMOR_peak_38258 chr4 44680199 44680750 + 9.39643 NA promoter-TSS (NM_021927) promoter-TSS (NM_021927) 41 NM_021927 60558 Hs.546419 NM_021927 HPRD:07821 GUF1 EF-4 GUF1 GTPase homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_16568 chr14 100489266 100489466 + 9.39643 NA Intergenic MER5B|DNA|hAT-Charlie -42385 NM_016337 51466 Hs.125867 NM_016337 HPRD:10942 EVL RNB6 Enah/Vasp-like protein-coding 13-PTNLD9-TUMOR_peak_299 chr1 8933711 8933949 + 9.39599 NA intron (NM_001428, intron 2 of 11) intron (NM_001428, intron 2 of 11) -2195 NM_001201483 2023 Hs.517145 NM_001428 HPRD:01400 ENO1 ENO1L1|MPB1|NNE|PPH enolase 1, (alpha) protein-coding 13-PTNLD9-TUMOR_peak_53980 chr9 93956036 93956367 + 9.39520 NA Intergenic CpG -118787 NR_033912 100129316 Hs.458154 NR_033912 LOC100129316 - uncharacterized LOC100129316 ncRNA 13-PTNLD9-TUMOR_peak_31385 chr20 48388898 48389009 + 9.39256 NA Intergenic Intergenic -40297 NR_048538 23315 Hs.444202 NM_015266 HPRD:18062 SLC9A8 NHE-8|NHE8 solute carrier family 9, subfamily A (NHE8, cation proton antiporter 8), member 8 protein-coding 13-PTNLD9-TUMOR_peak_52460 chr8 144818811 144818913 + 9.39256 NA intron (NR_033849, intron 2 of 3) intron (NR_033849, intron 2 of 3) 2552 NR_033849 100128338 Hs.493171 NR_033849 ENSG00000203499 FAM83H-AS1 - FAM83H antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_888 chr1 29449193 29449417 + 9.37153 NA promoter-TSS (NM_001171868) promoter-TSS (NM_001171868) -292 NM_001171868 399474 Hs.712722 NM_001003682 HPRD:13188 TMEM200B TTMB transmembrane protein 200B protein-coding 13-PTNLD9-TUMOR_peak_32278 chr21 38445450 38445786 + 9.37153 NA promoter-TSS (NM_153682) promoter-TSS (NM_153682) 47 NM_001001894 7267 Hs.368214 NM_003316 HPRD:03773 TTC3 DCRR1|RNF105|TPRDIII tetratricopeptide repeat domain 3 protein-coding 13-PTNLD9-TUMOR_peak_10817 chr11 85827143 85827502 + 9.37153 NA Intergenic Intergenic -46399 NM_001206947 8301 Hs.163893 NM_007166 HPRD:04320 PICALM CALM|CLTH|LAP phosphatidylinositol binding clathrin assembly protein protein-coding 13-PTNLD9-TUMOR_peak_16263 chr14 75086532 75086644 + 9.37153 NA Intergenic Intergenic -7554 NM_000428 4053 Hs.512776 NM_000428 HPRD:03650 LTBP2 C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3 latent transforming growth factor beta binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_35675 chr3 125120338 125120515 + 9.37153 NA Intergenic Intergenic -26228 NM_021964 7707 Hs.592591 NM_021964 HPRD:03540 ZNF148 BERF-1|BFCOL1|HT-BETA|ZBP-89|ZFP148|pHZ-52 zinc finger protein 148 protein-coding 13-PTNLD9-TUMOR_peak_36825 chr3 177314791 177315009 + 9.36748 NA intron (NR_047568, intron 2 of 3) intron (NR_047568, intron 2 of 3) 155191 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 13-PTNLD9-TUMOR_peak_31474 chr20 49545984 49546156 + 9.36748 NA intron (NM_015339, intron 1 of 4) intron (NM_015339, intron 1 of 4) -1451 NR_110009 101927631 Hs.301898 NR_110007 ENSG00000259456 ADNP-AS1 - ADNP antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_3785 chr1 154447362 154447555 + 9.36748 NA Intergenic Intergenic 27068 NM_001010846 126669 Hs.591481 NM_001010846 HPRD:17293 SHE - Src homology 2 domain containing E protein-coding 13-PTNLD9-TUMOR_peak_21980 chr17 73246255 73246523 + 9.36748 NA intron (NM_001291641, intron 1 of 17) intron (NM_001291641, intron 1 of 17) 11353 NM_014001 23163 Hs.87726 NM_014001 HPRD:10443 GGA3 - golgi-associated, gamma adaptin ear containing, ARF binding protein 3 protein-coding 13-PTNLD9-TUMOR_peak_33826 chr3 13063901 13064078 + 9.36748 NA intron (NM_001134382, intron 1 of 14) intron (NM_001134382, intron 1 of 14) 50628 NM_001134382 9922 Hs.475506 NM_014869 HPRD:11052 IQSEC1 ARF-GEP100|ARFGEP100|BRAG2|GEP100 IQ motif and Sec7 domain 1 protein-coding 13-PTNLD9-TUMOR_peak_14647 chr13 41634454 41634628 + 9.36748 NA Intergenic CpG -1156 NM_007187 11193 Hs.411300 NM_007187 HPRD:16086 WBP4 FBP21 WW domain binding protein 4 protein-coding 13-PTNLD9-TUMOR_peak_53269 chr9 41270778 41271016 + 9.36748 NA Intergenic Intergenic 41088 NR_026803 401507 Hs.553802 NM_001012278 HPRD:17394 FAM74A1 FAM74A5 family with sequence similarity 74, member A1 ncRNA 13-PTNLD9-TUMOR_peak_5532 chr1 223903056 223903296 + 9.36654 NA intron (NM_001748, intron 1 of 20) L2|LINE|L2 3057 NM_001748 824 Hs.350899 NM_001748 HPRD:00254 CAPN2 CANP2|CANPL2|CANPml|mCANP calpain 2, (m/II) large subunit protein-coding 13-PTNLD9-TUMOR_peak_19029 chr16 30797795 30797911 + 9.36522 NA intron (NM_001080417, intron 1 of 2) CpG 670 NM_001080417 23361 Hs.301094 NM_001080417 ENSG00000102870 ZNF629 ZNF|ZNF65 zinc finger protein 629 protein-coding 13-PTNLD9-TUMOR_peak_15744 chr14 51428757 51428932 + 9.36522 NA Intergenic LTR47B|LTR|ERVL -17596 NM_002863 5836 Hs.282417 NM_002863 HPRD:01987 PYGL GSD6 phosphorylase, glycogen, liver protein-coding 13-PTNLD9-TUMOR_peak_32495 chr21 44923100 44923417 + 9.36522 NA Intergenic Intergenic -25155 NR_026863 114038 Hs.592161 NM_153752 HPRD:10770 LINC00313 C21orf84|NCRNA00313 long intergenic non-protein coding RNA 313 ncRNA 13-PTNLD9-TUMOR_peak_55681 chrX 30005358 30005488 + 9.36522 NA Intergenic L1PA3|LINE|L1 -228252 NM_002364 4113 Hs.113824 NM_002364 HPRD:02109 MAGEB2 CT3.2|DAM6|MAGE-XP-2 melanoma antigen family B, 2 protein-coding 13-PTNLD9-TUMOR_peak_40989 chr5 59189617 59189951 + 9.36522 NA promoter-TSS (NM_001104631) promoter-TSS (NM_001104631) -163 NM_001104631 5144 Hs.117545 NM_006203 HPRD:02530 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D, cAMP-specific protein-coding 13-PTNLD9-TUMOR_peak_29042 chr2 171036540 171036736 + 9.36522 NA intron (NR_045684, intron 1 of 34) intron (NR_045684, intron 1 of 34) 1983 NR_045683 140469 Hs.671900 NM_138995 HPRD:17623 MYO3B - myosin IIIB protein-coding 13-PTNLD9-TUMOR_peak_6675 chr10 23673368 23673669 + 9.36522 NA Intergenic Intergenic -39746 NM_153714 256815 Hs.522360 NM_153714 HPRD:12585 C10orf67 - chromosome 10 open reading frame 67 protein-coding 13-PTNLD9-TUMOR_peak_27749 chr2 97508526 97508632 + 9.36522 NA intron (NM_144994, intron 1 of 8) intron (NM_144994, intron 1 of 8) 1179 NM_144994 200539 Hs.643430 NM_144994 HPRD:12462 ANKRD23 DARP|MARP3 ankyrin repeat domain 23 protein-coding 13-PTNLD9-TUMOR_peak_16814 chr15 24731076 24731261 + 9.36522 NA Intergenic Intergenic -72136 NR_026646 791114 Hs.720900 NR_026646 ENSG00000259905 PWRN1 NCRNA00198 Prader-Willi region non-protein coding RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_48964 chr7 127862097 127862276 + 9.36522 NA Intergenic Intergenic 14261 NR_029596 406917 NR_029596 miRBase:MI0000252 MIR129-1 MIR-129b|MIRN129-1 microRNA 129-1 ncRNA 13-PTNLD9-TUMOR_peak_55729 chrX 39614990 39615175 + 9.36522 NA Intergenic Intergenic 341637 NM_017745 54880 Hs.659681 NM_017745 HPRD:06458 BCOR ANOP2|MAA2|MCOPS2 BCL6 corepressor protein-coding 13-PTNLD9-TUMOR_peak_34863 chr3 65982412 65982649 + 9.36522 NA intron (NM_001033057, intron 1 of 22) intron (NM_001033057, intron 1 of 22) 41979 NM_015520 9223 Hs.476636 NM_004742 HPRD:04020 MAGI1 AIP-3|AIP3|BAIAP1|BAP-1|BAP1|MAGI-1|Magi1d|TNRC19|WWP3 membrane associated guanylate kinase, WW and PDZ domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_48350 chr7 94640943 94641134 + 9.36522 NA intron (NM_017650, intron 2 of 15) intron (NM_017650, intron 2 of 15) 101828 NM_001166161 55607 Hs.21816 NM_017650 ENSG00000158528 PPP1R9A NRB1|NRBI|Neurabin-I protein phosphatase 1, regulatory subunit 9A protein-coding 13-PTNLD9-TUMOR_peak_50559 chr8 32084605 32084720 + 9.36522 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) 200928 NR_104156 100856811 Hs.97362 NR_104156 NRG1-IT1 - NRG1 intronic transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_8257 chr10 105251847 105251972 + 9.36522 NA intron (NR_120675, intron 3 of 3) intron (NR_120675, intron 3 of 3) -1826 NM_004210 9148 Hs.594708 NM_004210 HPRD:04815 NEURL1 NEUR1|NEURL|RNF67|bA416N2.1|neu|neu-1 neuralized E3 ubiquitin protein ligase 1 protein-coding 13-PTNLD9-TUMOR_peak_2243 chr1 78335912 78336165 + 9.36522 NA intron (NM_198549, intron 14 of 15) SVA_E|Other|Other -18162 NM_001172309 91624 Hs.612385 NM_144573 HPRD:11388 NEXN CMH20|NELIN nexilin (F actin binding protein) protein-coding 13-PTNLD9-TUMOR_peak_49109 chr7 130969579 130969805 + 9.36522 NA intron (NM_001145354, intron 2 of 18) intron (NM_001145354, intron 2 of 18) 42846 NR_125364 100506881 Hs.660830 NR_125364 ENSG00000236753 MKLN1-AS MKLN1-AS2 MKLN1 antisense RNA ncRNA 13-PTNLD9-TUMOR_peak_42584 chr5 148960922 148961241 + 9.36522 NA promoter-TSS (NM_001001669) promoter-TSS (NM_001001669) -54 NM_001001669 389337 Hs.256206 NM_001001669 HPRD:13454 ARHGEF37 - Rho guanine nucleotide exchange factor (GEF) 37 protein-coding 13-PTNLD9-TUMOR_peak_45506 chr6 74171641 74171832 + 9.35818 NA exon (NM_012123, exon 1 of 12) exon (NM_012123, exon 1 of 12) 282 NM_133645 25821 Hs.347614 NM_012123 HPRD:17611 MTO1 COXPD10 mitochondrial tRNA translation optimization 1 protein-coding 13-PTNLD9-TUMOR_peak_44362 chr6 28339692 28339945 + 9.35818 NA Intergenic AluJo|SINE|Alu 22127 NM_001242894 80317 Hs.380930 NM_024493 HPRD:11705 ZKSCAN3 ZF47|ZFP306|ZNF306|ZNF309|ZSCAN13|ZSCAN35|Zfp47|dJ874C20.1|dJ874C20.1.|zfp-47 zinc finger with KRAB and SCAN domains 3 protein-coding 13-PTNLD9-TUMOR_peak_12710 chr12 49435739 49435930 + 9.35818 NA intron (NM_003482, intron 28 of 53) intron (NM_003482, intron 28 of 53) 13273 NM_003482 8085 Hs.731384 NM_003482 HPRD:03664 KMT2D AAD10|ALR|CAGL114|KABUK1|KMS|MLL2|MLL4|TNRC21 lysine (K)-specific methyltransferase 2D protein-coding 13-PTNLD9-TUMOR_peak_22831 chr18 24160012 24160322 + 9.35818 NA intron (NM_001258222, intron 1 of 4) L2a|LINE|L2 11332 NR_107024 102466874 NR_107024 MIR8057 hsa-mir-8057 microRNA 8057 ncRNA 13-PTNLD9-TUMOR_peak_13594 chr12 102256181 102256310 + 9.35818 NA Intergenic LTR23|LTR|ERV1 -14860 NM_018370 55332 Hs.525634 NM_018370 HPRD:07743 DRAM1 DRAM DNA-damage regulated autophagy modulator 1 protein-coding 13-PTNLD9-TUMOR_peak_33929 chr3 15333731 15333971 + 9.35818 NA intron (NM_001018009, intron 3 of 8) intron (NM_001018009, intron 3 of 8) 38160 NR_046084 100505696 Hs.745026 NR_046084 ENSG00000224660 SH3BP5-AS1 - SH3BP5 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_37827 chr4 7293218 7293386 + 9.35818 NA intron (NM_020777, intron 1 of 26) intron (NM_020777, intron 1 of 26) -18875 NR_039961 100616471 NR_039961 MIR4798 - microRNA 4798 ncRNA 13-PTNLD9-TUMOR_peak_54515 chr9 116800537 116800728 + 9.35818 NA intron (NM_133374, intron 12 of 13) intron (NM_133374, intron 12 of 13) 40120 NM_001633 259 Hs.436911 NM_001633 HPRD:01467 AMBP A1M|EDC1|HCP|HI30|IATIL|ITI|ITIL|ITILC|UTI alpha-1-microglobulin/bikunin precursor protein-coding 13-PTNLD9-TUMOR_peak_5409 chr1 219692075 219692233 + 9.35818 NA Intergenic Intergenic 343843 NM_001300772 127018 Hs.657617 NM_138794 HPRD:14335 LYPLAL1 - lysophospholipase-like 1 protein-coding 13-PTNLD9-TUMOR_peak_34931 chr3 70899076 70899217 + 9.35818 NA Intergenic Intergenic 214928 NM_001244813 27086 Hs.59368 NM_032682 HPRD:18518 FOXP1 12CC4|QRF1|hFKH1B forkhead box P1 protein-coding 13-PTNLD9-TUMOR_peak_55018 chr9 138330566 138330689 + 9.35818 NA Intergenic HERVE-int|LTR|ERV1 33468 NR_038969 100506599 Hs.561897 NR_038969 ENSG00000225361 PPP1R26-AS1 - PPP1R26 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_41746 chr5 111985660 111985885 + 9.35818 NA Intergenic MIRc|SINE|MIR 21639 NR_104672 102467214 Hs.124613 NR_104672 LOC102467214 - uncharacterized LOC102467214 ncRNA 13-PTNLD9-TUMOR_peak_42210 chr5 137144254 137144475 + 9.35818 NA non-coding (NR_002713, exon 2 of 2) non-coding (NR_002713, exon 2 of 2) 7482 NR_002713 4888 Hs.643466 NR_002713 ENSG00000226306 NPY6R NPY1RL|NPY6RP|PP2|Y2B neuropeptide Y receptor Y6 (pseudogene) pseudo 13-PTNLD9-TUMOR_peak_44013 chr6 18280420 18280629 + 9.35818 NA Intergenic Intergenic -15725 NM_001134709 7913 Hs.484813 NM_003472 HPRD:00503 DEK D6S231E DEK proto-oncogene protein-coding 13-PTNLD9-TUMOR_peak_46384 chr6 157342569 157342710 + 9.35818 NA intron (NM_020732, intron 5 of 19) CpG -241774 NR_039676 100616154 NR_039676 miRBase:MI0016817 MIR4466 - microRNA 4466 ncRNA 13-PTNLD9-TUMOR_peak_40857 chr5 53751272 53751550 + 9.35818 NA promoter-TSS (NM_006308) promoter-TSS (NM_006308) -20 NM_006308 8988 Hs.41707 NM_006308 HPRD:06861 HSPB3 DHMN2C|HMN2C|HSPL27 heat shock 27kDa protein 3 protein-coding 13-PTNLD9-TUMOR_peak_50494 chr8 29317228 29317414 + 9.35818 NA Intergenic Intergenic -109054 NM_001394 1846 Hs.417962 NM_001394 HPRD:04123 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 13-PTNLD9-TUMOR_peak_51788 chr8 123256824 123256958 + 9.35818 NA Intergenic L1PA2|LINE|L1 -537010 NM_014943 22882 Hs.377090 NM_014943 HPRD:16458 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 13-PTNLD9-TUMOR_peak_56057 chrX 65406020 65406140 + 9.35818 NA intron (NM_001282141, intron 4 of 17) L1HS|LINE|L1 22008 NM_014799 9843 Hs.31720 NM_014799 HPRD:02159 HEPH CPL hephaestin protein-coding 13-PTNLD9-TUMOR_peak_43632 chr6 6547103 6547250 + 9.35818 NA intron (NR_026970, intron 3 of 7) CpG -41758 NM_004271 9450 Hs.653138 NM_004271 LY86 MD-1|MMD-1|dJ80N2.1 lymphocyte antigen 86 protein-coding 13-PTNLD9-TUMOR_peak_46285 chr6 150390068 150390437 + 9.35818 NA promoter-TSS (NM_024518) promoter-TSS (NM_024518) -50 NM_024518 79465 Hs.326556 NM_024518 HPRD:16144 ULBP3 RAET1N UL16 binding protein 3 protein-coding 13-PTNLD9-TUMOR_peak_44800 chr6 36164173 36164507 + 9.35818 NA promoter-TSS (NM_015695) promoter-TSS (NM_015695) -210 NM_015695 27154 Hs.520096 NM_015695 HPRD:16565 BRPF3 - bromodomain and PHD finger containing, 3 protein-coding 13-PTNLD9-TUMOR_peak_1914 chr1 57286828 57286956 + 9.35818 NA Intergenic Intergenic -1523 NM_001004303 199920 Hs.437655 NM_001004303 HPRD:14120 C1orf168 - chromosome 1 open reading frame 168 protein-coding 13-PTNLD9-TUMOR_peak_48088 chr7 76882605 76882723 + 9.35818 NA intron (NM_020879, intron 4 of 18) intron (NM_020879, intron 4 of 18) -53514 NM_006682 10875 Hs.520989 NM_006682 HPRD:16098 FGL2 T49|pT49 fibrinogen-like 2 protein-coding 13-PTNLD9-TUMOR_peak_355 chr1 9950603 9950742 + 9.35818 NA intron (NM_020248, intron 1 of 5) intron (NM_020248, intron 1 of 5) 19644 NM_020248 56998 Hs.463759 NM_020248 HPRD:09677 CTNNBIP1 ICAT catenin, beta interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_50929 chr8 53379731 53380020 + 9.35818 NA Intergenic Intergenic -57436 NM_014682 9705 Hs.655499 NM_014682 HPRD:18110 ST18 NZF3|ZC2HC10|ZNF387 suppression of tumorigenicity 18, zinc finger protein-coding 13-PTNLD9-TUMOR_peak_38789 chr4 85612510 85612807 + 9.35818 NA intron (NM_014991, intron 60 of 67) intron (NM_014991, intron 60 of 67) 108601 NM_001263 1040 Hs.654899 NM_001263 HPRD:11944 CDS1 CDS CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 1 protein-coding 13-PTNLD9-TUMOR_peak_8652 chr10 134133766 134133896 + 9.35818 NA Intergenic MER67A|LTR|ERV1 -11783 NM_001143759 80313 Hs.119897 NM_030626 HPRD:17451 LRRC27 - leucine rich repeat containing 27 protein-coding 13-PTNLD9-TUMOR_peak_35660 chr3 124798584 124798708 + 9.35818 NA Intergenic AluJb|SINE|Alu -23844 NM_020733 57493 Hs.477420 NM_020733 ENSG00000173706 HEG1 HEG|MST112|MSTP112 heart development protein with EGF-like domains 1 protein-coding 13-PTNLD9-TUMOR_peak_36810 chr3 177165902 177166103 + 9.34796 NA intron (NR_047568, intron 1 of 3) intron (NR_047568, intron 1 of 3) 6293 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 13-PTNLD9-TUMOR_peak_44158 chr6 24981068 24981317 + 9.34787 NA intron (NM_001286446, intron 1 of 13) intron (NM_001286446, intron 1 of 13) -44912 NM_001286445 9750 Hs.559459 NM_014722 HPRD:12881 FAM65B C6orf32|DIFF40|DIFF48|MYONAP|PL48 family with sequence similarity 65, member B protein-coding 13-PTNLD9-TUMOR_peak_23878 chr19 9150951 9151085 + 9.34121 NA Intergenic Intergenic -52903 NM_001004456 125963 Hs.553577 NM_001004456 HPRD:17689 OR1M1 OR19-5|OR19-6 olfactory receptor, family 1, subfamily M, member 1 protein-coding 13-PTNLD9-TUMOR_peak_51487 chr8 103782346 103782601 + 9.34121 NA Intergenic Intergenic 93924 NM_148174 51582 Hs.459106 NM_015878 HPRD:07443 AZIN1 OAZI|OAZIN|ODC1L antizyme inhibitor 1 protein-coding 13-PTNLD9-TUMOR_peak_19407 chr16 56641315 56641484 + 9.34019 NA Intergenic Intergenic -1079 NM_005953 4502 Hs.534330 NM_005953 MT2A MT2 metallothionein 2A protein-coding 13-PTNLD9-TUMOR_peak_24630 chr19 30205946 30206220 + 9.33727 NA promoter-TSS (NM_001282929) promoter-TSS (NM_001282929) -120 NM_001282929 83636 Hs.529094 NM_031448 C19orf12 NBIA3|NBIA4|SPG43 chromosome 19 open reading frame 12 protein-coding 13-PTNLD9-TUMOR_peak_2862 chr1 112425854 112426076 + 9.33727 NA intron (NM_172198, intron 2 of 6) L2b|LINE|L2 -26438 NR_046783 100874295 Hs.738190 NR_046783 KCND3-IT1 - KCND3 intronic transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_3540 chr1 150121941 150122291 + 9.33727 NA promoter-TSS (NM_016274) promoter-TSS (NM_016274) -54 NM_016274 51177 Hs.438824 NM_016274 HPRD:12217 PLEKHO1 CKIP-1|OC120 pleckstrin homology domain containing, family O member 1 protein-coding 13-PTNLD9-TUMOR_peak_2359 chr1 87254375 87254678 + 9.33727 NA Intergenic Intergenic 84273 NM_001206653 51100 Hs.136309 NM_016009 HPRD:15333 SH3GLB1 Bif-1|PPP1R70|dJ612B15.2 SH3-domain GRB2-like endophilin B1 protein-coding 13-PTNLD9-TUMOR_peak_11978 chr12 6560935 6561308 + 9.33628 NA promoter-TSS (NM_018009) promoter-TSS (NM_018009) -56 NM_018009 55080 Hs.504597 NM_018009 HPRD:06153 TAPBPL TAPBP-R|TAPBPR TAP binding protein-like protein-coding 13-PTNLD9-TUMOR_peak_49319 chr7 138676856 138677132 + 9.33628 NA Intergenic Intergenic -10930 NM_001164665 57670 Hs.605380 NM_020910 ENSG00000122778 KIAA1549 - KIAA1549 protein-coding 13-PTNLD9-TUMOR_peak_21346 chr17 46177606 46177751 + 9.33628 NA intron (NM_001127228, intron 1 of 4) intron (NM_001127228, intron 1 of 4) 882 NM_006807 10951 Hs.77254 NM_006807 HPRD:05149 CBX1 CBX|HP1-BETA|HP1Hs-beta|HP1Hsbeta|M31|MOD1|p25beta chromobox homolog 1 protein-coding 13-PTNLD9-TUMOR_peak_3092 chr1 120604164 120604491 + 9.32444 NA intron (NM_024408, intron 1 of 33) intron (NM_024408, intron 1 of 33) 7990 NM_001200001 4853 Hs.487360 NM_024408 HPRD:02606 NOTCH2 AGS2|HJCYS|hN2 notch 2 protein-coding 13-PTNLD9-TUMOR_peak_40569 chr5 33892941 33893245 + 9.32275 NA promoter-TSS (NM_030955) promoter-TSS (NM_030955) -969 NM_030955 81792 Hs.12680 NM_030955 HPRD:05862 ADAMTS12 PRO4389 ADAM metallopeptidase with thrombospondin type 1 motif, 12 protein-coding 13-PTNLD9-TUMOR_peak_54649 chr9 123703407 123703572 + 9.32275 NA Intergenic L2a|LINE|L2 -12038 NM_001190945 7185 Hs.531251 NM_005658 HPRD:03418 TRAF1 EBI6|MGC:10353 TNF receptor-associated factor 1 protein-coding 13-PTNLD9-TUMOR_peak_17637 chr15 74471898 74472038 + 9.32275 NA 3' UTR (NM_001142618, exon 19 of 19) 3' UTR (NM_001142618, exon 19 of 19) 5063 NM_201526 3671 Hs.699822 NM_005545 HPRD:03636 ISLR HsT17563 immunoglobulin superfamily containing leucine-rich repeat protein-coding 13-PTNLD9-TUMOR_peak_28625 chr2 140410110 140410300 + 9.32275 NA Intergenic Tigger7|DNA|TcMar-Tigger 755311 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_10756 chr11 79102121 79102385 + 9.32275 NA intron (NM_001098816, intron 1 of 33) MIR|SINE|MIR 10900 NR_030598 100126333 NR_030598 miRBase:MI0005543 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 13-PTNLD9-TUMOR_peak_51474 chr8 103613265 103613445 + 9.32275 NA Intergenic CpG 49507 NM_024410 4956 Hs.159274 NM_024410 HPRD:01687 ODF1 CT133|HSPB10|ODF|ODF2|ODF27|ODFP|ODFPG|ODFPGA|ODFPGB|RT7|SODF outer dense fiber of sperm tails 1 protein-coding 13-PTNLD9-TUMOR_peak_17754 chr15 79296807 79297009 + 9.32275 NA intron (NM_001145648, intron 14 of 26) MIR3|SINE|MIR 1094 NM_153815 5923 Hs.459035 NM_002891 ENSG00000058335 RASGRF1 CDC25|CDC25L|GNRP|GRF1|GRF55|H-GRF55|PP13187|ras-GRF1 Ras protein-specific guanine nucleotide-releasing factor 1 protein-coding 13-PTNLD9-TUMOR_peak_28936 chr2 163588751 163588868 + 9.32275 NA intron (NM_033272, intron 2 of 15) intron (NM_033272, intron 2 of 15) -36637 NR_110258 101929570 Hs.470445 NR_110258 ENSG00000237750 LOC101929570 - uncharacterized LOC101929570 ncRNA 13-PTNLD9-TUMOR_peak_40484 chr5 22165064 22165229 + 9.32275 NA intron (NM_004061, intron 4 of 14) LTR80B|LTR|ERVL 22685 NR_003921 5369 Hs.247975 NM_031887 HPRD:15940 PMCHL1 - pro-melanin-concentrating hormone-like 1, pseudogene pseudo 13-PTNLD9-TUMOR_peak_54832 chr9 130797519 130797719 + 9.32275 NA Intergenic Intergenic 31980 NM_197956 203245 Hs.373606 NM_197956 HPRD:12987 NAIF1 C9orf90|bA379C10.2 nuclear apoptosis inducing factor 1 protein-coding 13-PTNLD9-TUMOR_peak_3699 chr1 153072815 153072933 + 9.32275 NA Intergenic AluSx|SINE|Alu -5870 NM_001024209 6704 Hs.568518 NM_001024209 ENSG00000203785 SPRR2E - small proline-rich protein 2E protein-coding 13-PTNLD9-TUMOR_peak_1682 chr1 47910480 47910649 + 9.32275 NA Intergenic CpG 8875 NM_004474 2306 Hs.166188 NM_004474 HPRD:03735 FOXD2 FKHL17|FREAC-9|FREAC9 forkhead box D2 protein-coding 13-PTNLD9-TUMOR_peak_37317 chr3 194209754 194209933 + 9.32079 NA TTS (NR_033929) TTS (NR_033929) 1974 NR_033929 401106 Hs.407087 NR_033929 LINC00884 - long intergenic non-protein coding RNA 884 ncRNA 13-PTNLD9-TUMOR_peak_41353 chr5 76463754 76463932 + 9.31982 NA Intergenic Intergenic -42863 NM_001029851 8622 Hs.584830 NM_003719 HPRD:04546 PDE8B ADSD|PPNAD3 phosphodiesterase 8B protein-coding 13-PTNLD9-TUMOR_peak_35761 chr3 126994464 126994579 + 9.31982 NA Intergenic MER52-int|LTR|ERV1 82547 NM_001007534 285311 Hs.591284 NM_001007534 HPRD:16949 C3orf56 - chromosome 3 open reading frame 56 protein-coding 13-PTNLD9-TUMOR_peak_24071 chr19 12868487 12868608 + 9.31982 NA exon (NM_017682, exon 9 of 9) exon (NM_017682, exon 9 of 9) 5140 NM_017682 54831 Hs.435611 NM_017682 ENSG00000039987 BEST2 VMD2L1 bestrophin 2 protein-coding 13-PTNLD9-TUMOR_peak_23268 chr18 55438524 55438676 + 9.31982 NA intron (NM_005603, intron 1 of 27) intron (NM_005603, intron 1 of 27) 31727 NM_005603 5205 Hs.216623 NM_005603 HPRD:03867 ATP8B1 ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1 ATPase, aminophospholipid transporter, class I, type 8B, member 1 protein-coding 13-PTNLD9-TUMOR_peak_24878 chr19 38704773 38704986 + 9.31982 NA intron (NM_001135155, intron 9 of 11) intron (NM_001135155, intron 9 of 11) 10011 NM_001289978 8193 Hs.631576 NM_004647 HPRD:03393 DPF1 BAF45b|NEUD4|neuro-d4 D4, zinc and double PHD fingers family 1 protein-coding 13-PTNLD9-TUMOR_peak_5227 chr1 205753060 205753395 + 9.31982 NA Intergenic MamRep605|Unknown|Unknown -8617 NM_001135664 8934 Hs.115325 NM_003929 HPRD:11962 RAB29 RAB7L|RAB7L1 RAB29, member RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_2871 chr1 112902892 112903073 + 9.31982 NA Intergenic Intergenic -35818 NM_018704 55917 Hs.744100 NM_018704 HPRD:10906 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 13-PTNLD9-TUMOR_peak_19136 chr16 33381985 33382081 + 9.31859 NA Intergenic Intergenic -83331 NR_033866 390705 Hs.278513 NR_033866 LOC390705 - protein phosphatase 2, regulatory subunit B'', beta pseudogene pseudo 13-PTNLD9-TUMOR_peak_29530 chr2 201754355 201754624 + 9.31859 NA promoter-TSS (NM_032472) promoter-TSS (NM_032472) 381 NM_021824 60491 Hs.145284 NM_021824 HPRD:10424 NIF3L1 ALS2CR1|CALS-7 NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_53470 chr9 67926390 67926637 + 9.31613 NA promoter-TSS (NM_032250) promoter-TSS (NM_032250) -248 NM_032250 84210 Hs.632671 NM_032250 HPRD:10649 ANKRD20A1 ANKRD20A ankyrin repeat domain 20 family, member A1 protein-coding 13-PTNLD9-TUMOR_peak_49687 chr7 151409367 151409667 + 9.31318 NA intron (NM_001040633, intron 3 of 15) intron (NM_001040633, intron 3 of 15) -80173 NM_024429 51422 Hs.647072 NM_016203 HPRD:04119 PRKAG2 AAKG|AAKG2|CMH6|H91620p|WPWS protein kinase, AMP-activated, gamma 2 non-catalytic subunit protein-coding 13-PTNLD9-TUMOR_peak_1664 chr1 47647801 47647960 + 9.31170 NA Intergenic Intergenic 2958 NR_047498 100874253 Hs.435758 NR_047498 ENSG00000224805 LINC00853 PDZK1IP1-AS1|ncRNA-a4 long intergenic non-protein coding RNA 853 ncRNA 13-PTNLD9-TUMOR_peak_33476 chr22 47330916 47331099 + 9.31101 NA intron (NR_104292, intron 10 of 13) intron (NR_104292, intron 10 of 13) -19069 NR_122047 642757 Hs.632786 NR_122047 TBC1D22A-AS1 - TBC1D22A antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_47035 chr7 22248550 22248683 + 9.31101 NA intron (NM_012294, intron 9 of 25) intron (NM_012294, intron 9 of 25) 147917 NM_012294 9771 Hs.174768 NM_012294 HPRD:15208 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor (GEF) 5 protein-coding 13-PTNLD9-TUMOR_peak_14226 chr12 125160533 125160716 + 9.31101 NA Intergenic Intergenic -108614 NM_001206654 9612 Hs.137510 NM_006312 HPRD:02910 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 13-PTNLD9-TUMOR_peak_23029 chr18 43197345 43197550 + 9.31101 NA intron (NM_007163, intron 1 of 19) intron (NM_007163, intron 1 of 19) 2681 NM_007163 8170 Hs.710927 NM_007163 HPRD:03366 SLC14A2 HUT2|UT-A2|UT2|UTA|UTR|hUT-A6 solute carrier family 14 (urea transporter), member 2 protein-coding 13-PTNLD9-TUMOR_peak_31967 chr21 17115559 17115791 + 9.31101 NA intron (NM_001283041, intron 1 of 25) LTR27B|LTR|ERV1 13331 NM_001283041 29761 Hs.743994 NM_013396 HPRD:05296 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 13-PTNLD9-TUMOR_peak_9090 chr11 12197577 12197703 + 9.31101 NA intron (NM_001282665, intron 2 of 21) intron (NM_001282665, intron 2 of 21) 12410 NR_106739 102466906 NR_106739 MIR6124 hsa-mir-6124 microRNA 6124 ncRNA 13-PTNLD9-TUMOR_peak_54613 chr9 121931449 121931582 + 9.31101 NA intron (NM_014618, intron 7 of 7) L1PA2|LINE|L1 200224 NM_014618 1620 Hs.532316 NM_014618 HPRD:04181 BRINP1 DBC1|DBCCR1|FAM5A bone morphogenetic protein/retinoic acid inducible neural-specific 1 protein-coding 13-PTNLD9-TUMOR_peak_51316 chr8 95271264 95271607 + 9.31101 NA intron (NM_005261, intron 2 of 4) intron (NM_005261, intron 2 of 4) 3112 NM_181702 2669 Hs.654463 NM_005261 HPRD:11553 GEM KIR GTP binding protein overexpressed in skeletal muscle protein-coding 13-PTNLD9-TUMOR_peak_51665 chr8 117599643 117599773 + 9.31101 NA Intergenic Intergenic 168354 NM_003756 8667 Hs.492599 NM_003756 EIF3H EIF3S3|eIF3-gamma|eIF3-p40 eukaryotic translation initiation factor 3, subunit H protein-coding 13-PTNLD9-TUMOR_peak_43689 chr6 7758802 7758997 + 9.31101 NA intron (NM_001718, intron 1 of 6) intron (NM_001718, intron 1 of 6) 31888 NM_001718 654 Hs.285671 NM_001718 HPRD:00211 BMP6 VGR|VGR1 bone morphogenetic protein 6 protein-coding 13-PTNLD9-TUMOR_peak_4772 chr1 185453306 185453519 + 9.31101 NA Intergenic Intergenic 144208 NR_110793 101929093 Hs.535227 NR_110793 ENSG00000228309 LINC01350 GS1-204I12.1 long intergenic non-protein coding RNA 1350 ncRNA 13-PTNLD9-TUMOR_peak_46111 chr6 136724250 136724497 + 9.31101 NA intron (NM_003980, intron 3 of 17) intron (NM_003980, intron 3 of 17) 63640 NM_001198615 9053 Hs.486548 NM_003980 HPRD:04982 MAP7 E-MAP-115|EMAP115 microtubule-associated protein 7 protein-coding 13-PTNLD9-TUMOR_peak_5869 chr1 233623296 233623423 + 9.31101 NA Intergenic LTR43|LTR|ERV1 -126391 NM_002245 3775 Hs.208544 NM_002245 HPRD:03447 KCNK1 DPK|HOHO|K2P1|K2p1.1|KCNO1|TWIK-1|TWIK1 potassium channel, subfamily K, member 1 protein-coding 13-PTNLD9-TUMOR_peak_29400 chr2 192611711 192611851 + 9.31101 NA Intergenic Intergenic 68919 NR_045623 64859 Hs.591610 NM_022837 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_50549 chr8 31143721 31143839 + 9.31101 NA Intergenic Intergenic -252549 NM_001015508 29942 Hs.373778 NM_013357 HPRD:17933 PURG PURG-A|PURG-B purine-rich element binding protein G protein-coding 13-PTNLD9-TUMOR_peak_43765 chr6 11194930 11195067 + 9.31101 NA intron (NM_001271033, intron 1 of 5) intron (NM_001271033, intron 1 of 5) 37917 NM_182966 4739 Hs.37982 NM_006403 HPRD:11888 NEDD9 CAS-L|CAS2|CASL|CASS2|HEF1 neural precursor cell expressed, developmentally down-regulated 9 protein-coding 13-PTNLD9-TUMOR_peak_16085 chr14 68431127 68431262 + 9.31101 NA intron (NM_133510, intron 7 of 10) intron (NM_133510, intron 7 of 10) 144698 NM_133510 5890 Hs.172587 NM_002877 HPRD:04255 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 13-PTNLD9-TUMOR_peak_29135 chr2 174877459 174877893 + 9.31101 NA Intergenic CpG -47246 NM_003111 6670 Hs.531587 NM_003111 HPRD:03483 SP3 SPR2 Sp3 transcription factor protein-coding 13-PTNLD9-TUMOR_peak_26605 chr2 37926519 37926648 + 9.31101 NA Intergenic L2b|LINE|L2 -26905 NM_001270436 10602 Hs.369574 NM_006449 HPRD:09364 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein (Rho GTPase binding) 3 protein-coding 13-PTNLD9-TUMOR_peak_56418 chrX 119021761 119021922 + 9.31101 NA Intergenic Intergenic -8095 NM_001008534 158798 Hs.592245 NM_178813 HPRD:02353 AKAP14 AKAP28|PRKA14 A kinase (PRKA) anchor protein 14 protein-coding 13-PTNLD9-TUMOR_peak_49913 chr8 23101 23206 + 9.30598 NA Intergenic Intergenic 93871 NM_001005504 441308 Hs.690459 NM_001005504 OR4F21 OR4F21P olfactory receptor, family 4, subfamily F, member 21 protein-coding 13-PTNLD9-TUMOR_peak_18884 chr16 28554496 28554749 + 9.30468 NA Intergenic Intergenic -4127 NM_001042483 26471 Hs.513463 NM_012385 HPRD:17814 NUPR1 COM1|P8 nuclear protein, transcriptional regulator, 1 protein-coding 13-PTNLD9-TUMOR_peak_35324 chr3 111433278 111433468 + 9.30468 NA intron (NM_153268, intron 3 of 3) intron (NM_153268, intron 3 of 3) -17954 NM_001134437 90102 Hs.603252 NM_145753 HPRD:06611 PHLDB2 LL5b|LL5beta pleckstrin homology-like domain, family B, member 2 protein-coding 13-PTNLD9-TUMOR_peak_21467 chr17 48560024 48560135 + 9.30468 NA intron (NM_018346, intron 5 of 8) intron (NM_018346, intron 5 of 8) 3889 NM_018346 55316 Hs.8033 NM_018346 HPRD:07737 RSAD1 - radical S-adenosyl methionine domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_32511 chr21 45188003 45188268 + 9.30312 NA Intergenic Intergenic 8121 NM_000100 1476 Hs.695 NM_000100 CSTB CST6|EPM1|EPM1A|PME|STFB|ULD cystatin B (stefin B) protein-coding 13-PTNLD9-TUMOR_peak_23025 chr18 42919877 42920152 + 9.30312 NA intron (NM_001242692, intron 1 of 20) intron (NM_001242692, intron 1 of 20) 127067 NM_001242692 8170 Hs.710927 NM_007163 HPRD:03366 SLC14A2 HUT2|UT-A2|UT2|UTA|UTR|hUT-A6 solute carrier family 14 (urea transporter), member 2 protein-coding 13-PTNLD9-TUMOR_peak_18676 chr16 19130353 19130555 + 9.30312 NA non-coding (NR_028028, exon 2 of 2) non-coding (NR_028028, exon 2 of 2) 5200 NR_028028 162073 Hs.530899 NM_001034841 HPRD:18743 ITPRIPL2 - inositol 1,4,5-trisphosphate receptor interacting protein-like 2 protein-coding 13-PTNLD9-TUMOR_peak_26219 chr2 17934604 17934705 + 9.30312 NA promoter-TSS (NM_001130009) promoter-TSS (NM_001130009) 442 NM_024624 79677 Hs.526728 NM_024624 HPRD:10242 SMC6 SMC-6|SMC6L1|hSMC6 structural maintenance of chromosomes 6 protein-coding 13-PTNLD9-TUMOR_peak_324 chr1 9350211 9350413 + 9.30312 NA Intergenic Intergenic -2629 NM_025106 80176 Hs.8261 NM_025106 HPRD:18106 SPSB1 SSB-1|SSB1 splA/ryanodine receptor domain and SOCS box containing 1 protein-coding 13-PTNLD9-TUMOR_peak_758 chr1 26602804 26602953 + 9.30312 NA intron (NM_022778, intron 12 of 13) intron (NM_022778, intron 12 of 13) -3335 NM_031286 83442 Hs.109051 NM_031286 SH3BGRL3 HEL-S-297|SH3BP-1|TIP-B1 SH3 domain binding glutamate-rich protein like 3 protein-coding 13-PTNLD9-TUMOR_peak_15248 chr14 21078292 21078431 + 9.30086 NA Intergenic tRNA-Leu-CTY|tRNA|tRNA -19379 NM_001024822 493901 Hs.729466 NM_001024822 HPRD:18667 RNASE12 HEL-S-85p|RAI1 ribonuclease, RNase A family, 12 (non-active) protein-coding 13-PTNLD9-TUMOR_peak_50275 chr8 22103457 22103631 + 9.29066 NA promoter-TSS (NR_029714) promoter-TSS (NR_029714) 925 NM_001722 661 Hs.148342 NM_001722 HPRD:01755 POLR3D BN51T|RPC4|RPC53|TSBN51 polymerase (RNA) III (DNA directed) polypeptide D, 44kDa protein-coding 13-PTNLD9-TUMOR_peak_3960 chr1 156660227 156660358 + 9.29066 NA Intergenic Intergenic -13103 NM_006617 10763 Hs.527971 NM_006617 HPRD:09020 NES - nestin protein-coding 13-PTNLD9-TUMOR_peak_18147 chr16 575647 575890 + 9.29066 NA Intergenic Intergenic 1639 NR_024121 64493 Hs.721553 NR_024121 LINC00235 C16orf10|NCRNA00235 long intergenic non-protein coding RNA 235 ncRNA 13-PTNLD9-TUMOR_peak_28532 chr2 134570872 134571035 + 9.28932 NA Intergenic Intergenic -244922 NM_207363 344148 Hs.537329 NM_207363 HPRD:16936 NCKAP5 ERIH1|ERIH2|NAP5 NCK-associated protein 5 protein-coding 13-PTNLD9-TUMOR_peak_51432 chr8 102016310 102016510 + 9.28190 NA Intergenic MIRb|SINE|MIR -47872 NR_033962 441374 Hs.652045 NR_033962 ENSG00000248599 FLJ42969 - uncharacterized LOC441374 ncRNA 13-PTNLD9-TUMOR_peak_42352 chr5 140557289 140557426 + 9.28190 NA promoter-TSS (NM_019120) promoter-TSS (NM_019120) -14 NM_019120 56128 Hs.283803 NM_019120 HPRD:07563 PCDHB8 PCDH-BETA8|PCDH3I protocadherin beta 8 protein-coding 13-PTNLD9-TUMOR_peak_31135 chr20 43105900 43106050 + 9.28190 NA intron (NM_001039199, intron 1 of 4) L2b|LINE|L2 1449 NM_024331 79183 Hs.283869 NM_024331 HPRD:09837 TTPAL C20orf121 tocopherol (alpha) transfer protein-like protein-coding 13-PTNLD9-TUMOR_peak_17327 chr15 55790356 55790740 + 9.28190 NA non-coding (NR_037923, exon 1 of 16) non-coding (NR_037923, exon 1 of 16) 234 NR_037923 100533483 Hs.285051 NR_037923 DYX1C1-CCPG1 - DYX1C1-CCPG1 readthrough (NMD candidate) ncRNA 13-PTNLD9-TUMOR_peak_37562 chr4 1109495 1109663 + 9.28190 NA intron (NR_033768, intron 3 of 3) MIRb|SINE|MIR -2227 NM_001131034 285498 Hs.248290 NM_194439 HPRD:14158 RNF212 ZHP3 ring finger protein 212 protein-coding 13-PTNLD9-TUMOR_peak_21310 chr17 45589918 45590093 + 9.28190 NA Intergenic Intergenic -18439 NM_006310 9520 Hs.443837 NM_006310 HPRD:07366 NPEPPS AAP-S|MP100|PSA aminopeptidase puromycin sensitive protein-coding 13-PTNLD9-TUMOR_peak_15725 chr14 50863429 50863972 + 9.28190 NA intron (NM_001282236, intron 1 of 8) C-rich|Low_complexity|Low_complexity 422 NM_001282236 8814 Hs.280881 NM_004196 CDKL1 KKIALRE|P42 cyclin-dependent kinase-like 1 (CDC2-related kinase) protein-coding 13-PTNLD9-TUMOR_peak_30766 chr20 31033852 31034007 + 9.28190 NA 3' UTR (NM_080616, exon 8 of 8) 3' UTR (NM_080616, exon 8 of 8) 37456 NM_080616 140688 Hs.516978 NM_080616 HPRD:10728 NOL4L C20orf112|C20orf113|dJ1184F4.2|dJ1184F4.4 nucleolar protein 4-like protein-coding 13-PTNLD9-TUMOR_peak_54906 chr9 132565244 132565470 + 9.28190 NA promoter-TSS (NM_014506) promoter-TSS (NM_014506) -75 NM_014506 27348 Hs.252682 NM_014506 HPRD:16270 TOR1B DQ1 torsin family 1, member B (torsin B) protein-coding 13-PTNLD9-TUMOR_peak_35760 chr3 126994187 126994286 + 9.28190 NA Intergenic MER52-int|LTR|ERV1 82262 NM_001007534 285311 Hs.591284 NM_001007534 HPRD:16949 C3orf56 - chromosome 3 open reading frame 56 protein-coding 13-PTNLD9-TUMOR_peak_53546 chr9 71320003 71320194 + 9.28190 NA promoter-TSS (NM_003558) promoter-TSS (NM_003558) -232 NM_001278253 8395 Hs.534371 NM_003558 HPRD:04121 PIP5K1B MSS4|STM7 phosphatidylinositol-4-phosphate 5-kinase, type I, beta protein-coding 13-PTNLD9-TUMOR_peak_5831 chr1 231964023 231964208 + 9.28190 NA intron (NM_001164541, intron 9 of 9) intron (NM_001164541, intron 9 of 9) -9852 NR_002227 27184 Hs.720568 NR_002227 DISC2 DISC1-AS1|DISC1OS|NCRNA00015 disrupted in schizophrenia 2 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_24303 chr19 17255756 17255858 + 9.28190 NA intron (NM_001130065, intron 2 of 39) AluSx|SINE|Alu 69216 NM_004145 4650 Hs.123198 NM_004145 HPRD:03677 MYO9B CELIAC4|MYR5 myosin IXB protein-coding 13-PTNLD9-TUMOR_peak_15564 chr14 36004529 36004687 + 9.28190 NA exon (NM_032594, exon 1 of 1) exon (NM_032594, exon 1 of 1) 1360 NM_032594 84684 Hs.62813 NM_032594 HPRD:17152 INSM2 IA-6|IA6|mlt1 insulinoma-associated 2 protein-coding 13-PTNLD9-TUMOR_peak_33546 chr3 1840490 1840704 + 9.28190 NA Intergenic Intergenic -299953 NM_175607 152330 Hs.298705 NM_175607 HPRD:16239 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 13-PTNLD9-TUMOR_peak_21441 chr17 48194679 48194814 + 9.28190 NA intron (NM_001257359, intron 4 of 9) CpG 12500 NM_174920 201191 Hs.567769 NM_174920 HPRD:14127 SAMD14 - sterile alpha motif domain containing 14 protein-coding 13-PTNLD9-TUMOR_peak_17557 chr15 70355036 70355205 + 9.28114 NA intron (NM_001282979, intron 8 of 19) intron (NM_001282979, intron 8 of 19) 16687 NR_030714 693214 NR_030714 MIR629 MIRN629|hsa-mir-629 microRNA 629 ncRNA 13-PTNLD9-TUMOR_peak_7249 chr10 47386325 47386532 + 9.28114 NA non-coding (NR_027634, exon 2 of 7) non-coding (NR_027634, exon 2 of 7) 6708 NR_027634 439965 Hs.283521 NR_027634 FAM35DP FAM35B2 family with sequence similarity 35, member A pseudogene pseudo 13-PTNLD9-TUMOR_peak_47778 chr7 67539400 67539534 + 9.28114 NA Intergenic LTR78|LTR|ERV1 54227 NR_120514 102723427 Hs.583491 NR_120514 LOC102723427 - uncharacterized LOC102723427 ncRNA 13-PTNLD9-TUMOR_peak_26343 chr2 25896640 25896845 + 9.28114 NA promoter-TSS (NM_033148) promoter-TSS (NM_033148) -226 NM_033148 1838 Hs.307720 NM_021907 HPRD:09091 DTNB - dystrobrevin, beta protein-coding 13-PTNLD9-TUMOR_peak_15816 chr14 54914024 54914136 + 9.28114 NA Intergenic Intergenic -5932 NM_005776 10175 Hs.294603 NM_005776 HPRD:16730 CNIH1 CNIH|CNIH-1|CNIL|TGAM77 cornichon family AMPA receptor auxiliary protein 1 protein-coding 13-PTNLD9-TUMOR_peak_15394 chr14 24861561 24861754 + 9.28114 NA Intergenic Intergenic -6335 NM_025081 57523 Hs.288348 NM_025081 ENSG00000205978 NYNRIN CGIN1|KIAA1305 NYN domain and retroviral integrase containing protein-coding 13-PTNLD9-TUMOR_peak_22765 chr18 20686623 20686818 + 9.28114 NA Intergenic Intergenic -27808 NM_001256438 91768 Hs.11108 NM_138375 HPRD:16461 CABLES1 CABL1|CABLES|HsT2563|IK3-1 Cdk5 and Abl enzyme substrate 1 protein-coding 13-PTNLD9-TUMOR_peak_29732 chr2 211820465 211820595 + 9.28114 NA Intergenic Intergenic 338235 NR_002763 29034 Hs.658398 NR_002763 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_53021 chr9 33181255 33181389 + 9.28114 NA Intergenic AluJo|SINE|Alu 13465 NR_108108 101929639 Hs.545818 NR_108108 B4GALT1-AS1 - B4GALT1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_42043 chr5 131833473 131833601 + 9.28114 NA Intergenic Intergenic -7072 NM_002198 3659 Hs.436061 NM_002198 HPRD:00961 IRF1 IRF-1|MAR interferon regulatory factor 1 protein-coding 13-PTNLD9-TUMOR_peak_2170 chr1 69169898 69170029 + 9.28114 NA Intergenic Intergenic -207059 NM_001114120 55635 Hs.445098 NM_017779 HPRD:10879 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_41010 chr5 60597704 60597884 + 9.27311 NA Intergenic Intergenic -30306 NM_020928 57688 Hs.744939 NM_020928 ENSG00000130449 ZSWIM6 - zinc finger, SWIM-type containing 6 protein-coding 13-PTNLD9-TUMOR_peak_28099 chr2 113336844 113337008 + 9.27311 NA Intergenic L1MD2|LINE|L1 -5110 NM_032309 84269 Hs.375707 NM_032309 HPRD:13046 CHCHD5 C2orf9|MIC14 coiled-coil-helix-coiled-coil-helix domain containing 5 protein-coding 13-PTNLD9-TUMOR_peak_26682 chr2 42353361 42353560 + 9.27311 NA Intergenic Intergenic -43030 NM_001145076 27436 Hs.713173 NM_019063 HPRD:06310 EML4 C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120 echinoderm microtubule associated protein like 4 protein-coding 13-PTNLD9-TUMOR_peak_1629 chr1 46908371 46908679 + 9.27311 NA intron (NR_045483, intron 7 of 8) intron (NR_045483, intron 7 of 8) 6851 NR_121680 101929651 Hs.638707 NR_121680 ENSG00000224863 LINC01398 - long intergenic non-protein coding RNA 1398 ncRNA 13-PTNLD9-TUMOR_peak_55050 chr9 139795482 139795654 + 9.27311 NA intron (NM_021138, intron 4 of 10) intron (NM_021138, intron 4 of 10) 14383 NR_039697 100616480 NR_039697 MIR4479 - microRNA 4479 ncRNA 13-PTNLD9-TUMOR_peak_25484 chr19 51487188 51487457 + 9.27311 NA promoter-TSS (NM_139277) promoter-TSS (NM_139277) -2 NM_001207053 5650 Hs.151254 NM_005046 HPRD:05115 KLK7 PRSS6|SCCE|hK7 kallikrein-related peptidase 7 protein-coding 13-PTNLD9-TUMOR_peak_33596 chr3 5019257 5019493 + 9.27223 NA Intergenic Intergenic -1722 NM_003670 8553 Hs.744856 NM_003670 HPRD:16050 BHLHE40 BHLHB2|DEC1|HLHB2|SHARP-2|STRA13|Stra14 basic helix-loop-helix family, member e40 protein-coding 13-PTNLD9-TUMOR_peak_1645 chr1 47213517 47213654 + 9.26858 NA Intergenic Intergenic -28849 NM_014774 9813 Hs.707688 NM_014774 HPRD:17191 EFCAB14 KIAA0494 EF-hand calcium binding domain 14 protein-coding 13-PTNLD9-TUMOR_peak_31250 chr20 45187236 45187434 + 9.26858 NA 3' UTR (NM_022829, exon 13 of 13) 3' UTR (NM_022829, exon 13 of 13) -8122 NM_080721 128506 Hs.526636 NM_080721 ENSG00000149635 OCSTAMP C20orf123|OC-STAMP|dJ257E24.3 osteoclast stimulatory transmembrane protein protein-coding 13-PTNLD9-TUMOR_peak_8215 chr10 104161714 104161837 + 9.26858 NA TTS (NM_001270966) TTS (NM_001270966) 6422 NM_001261403 4791 Hs.73090 NM_002502 HPRD:01239 NFKB2 CVID10|H2TF1|LYT-10|LYT10|NF-kB2|p105|p52 nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100) protein-coding 13-PTNLD9-TUMOR_peak_37993 chr4 10830417 10830547 + 9.26858 NA Intergenic L1PA2|LINE|L1 -144096 NM_052964 116449 Hs.678910 NM_052964 CLNK MIST cytokine-dependent hematopoietic cell linker protein-coding 13-PTNLD9-TUMOR_peak_35965 chr3 133163052 133163397 + 9.26858 NA intron (NM_003571, intron 1 of 6) MIRb|SINE|MIR 44385 NM_003571 8419 Hs.659862 NM_003571 HPRD:04444 BFSP2 CP47|CP49|CTRCT12|LIFL-L|PHAKOSIN beaded filament structural protein 2, phakinin protein-coding 13-PTNLD9-TUMOR_peak_54447 chr9 114425602 114425841 + 9.26858 NA intron (NM_001017998, intron 1 of 2) intron (NM_001017998, intron 1 of 2) 1870 NM_001017998 2790 Hs.534196 NM_001017998 ENSG00000242616 GNG10 - guanine nucleotide binding protein (G protein), gamma 10 protein-coding 13-PTNLD9-TUMOR_peak_3702 chr1 153189826 153190051 + 9.26858 NA promoter-TSS (NM_001195571) promoter-TSS (NM_001195571) -122 NM_001195571 574414 Hs.135098 NM_001195571 ENSG00000203783 PRR9 - proline rich 9 protein-coding 13-PTNLD9-TUMOR_peak_53353 chr9 45355972 45356183 + 9.26768 NA Intergenic CpG -350787 NR_121606 102723709 Hs.743015 NR_121606 LOC102723709 - uncharacterized LOC102723709 ncRNA 13-PTNLD9-TUMOR_peak_8716 chr11 210232 210400 + 9.26580 NA TTS (NR_106801) TTS (NR_106801) 980 NR_106801 102465445 NR_106801 MIR6743 hsa-mir-6743 microRNA 6743 ncRNA 13-PTNLD9-TUMOR_peak_30850 chr20 33515644 33515957 + 9.26402 NA TTS (NM_000178) TTS (NM_000178) 27801 NM_000178 2937 Hs.82327 NM_000178 HPRD:03000 GSS GSHS|HEL-S-64p|HEL-S-88n glutathione synthetase protein-coding 13-PTNLD9-TUMOR_peak_26579 chr2 36936944 36937066 + 9.26402 NA intron (NM_001177971, intron 1 of 13) L2|LINE|L2 13172 NM_001177969 5212 Hs.137415 NM_053276 HPRD:18284 VIT - vitrin protein-coding 13-PTNLD9-TUMOR_peak_22752 chr18 20291142 20291297 + 9.26402 NA Intergenic Intergenic 75581 NR_110782 101927571 Hs.335020 NR_110782 ENSG00000266850 LOC101927571 - uncharacterized LOC101927571 ncRNA 13-PTNLD9-TUMOR_peak_4740 chr1 184452229 184452331 + 9.26402 NA intron (NM_030806, intron 2 of 5) intron (NM_030806, intron 2 of 5) 96130 NM_030806 81563 Hs.497159 NM_030806 HPRD:12721 C1orf21 PIG13 chromosome 1 open reading frame 21 protein-coding 13-PTNLD9-TUMOR_peak_50551 chr8 31289017 31289197 + 9.26402 NA Intergenic Intergenic -208161 NM_013962 3084 Hs.453951 NM_004495 HPRD:00802 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 13-PTNLD9-TUMOR_peak_37265 chr3 192866679 192866981 + 9.26402 NA Intergenic Intergenic -92087 NM_020386 57110 Hs.36761 NM_020386 HPRD:07577 HRASLS A-C1|H-REV107|HRASLS1|HRSL1|HSD28 HRAS-like suppressor protein-coding 13-PTNLD9-TUMOR_peak_47309 chr7 42897286 42897418 + 9.26402 NA Intergenic Intergenic 54337 NM_001099858 79020 Hs.698120 NM_024054 HPRD:09861 C7orf25 - chromosome 7 open reading frame 25 protein-coding 13-PTNLD9-TUMOR_peak_18538 chr16 12124007 12124196 + 9.26402 NA intron (NM_032167, intron 4 of 20) L2|LINE|L2 53499 NM_032167 92017 Hs.458401 NM_032167 HPRD:17437 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 13-PTNLD9-TUMOR_peak_53951 chr9 92756422 92756558 + 9.26402 NA Intergenic MLT1N2|LTR|ERVL-MaLR 24792 NR_109791 101927847 Hs.584312 NR_109791 LOC101927847 - uncharacterized LOC101927847 ncRNA 13-PTNLD9-TUMOR_peak_20681 chr17 21360471 21360801 + 9.26402 NA Intergenic Intergenic 52188 NM_001194958 100134444 Hs.200629 NM_001194958 KCNJ18 KIR2.6|TTPP2 potassium inwardly-rectifying channel, subfamily J, member 18 protein-coding 13-PTNLD9-TUMOR_peak_4918 chr1 200876812 200876974 + 9.26402 NA intron (NM_018265, intron 5 of 9) intron (NM_018265, intron 5 of 9) 12944 NM_001142569 55765 Hs.518997 NM_018265 HPRD:07712 C1orf106 - chromosome 1 open reading frame 106 protein-coding 13-PTNLD9-TUMOR_peak_7680 chr10 73156104 73156316 + 9.26402 NA promoter-TSS (NM_022124) promoter-TSS (NM_022124) -481 NM_001171931 64072 Hs.656032 NM_022124 HPRD:05699 CDH23 CDHR23|USH1D cadherin-related 23 protein-coding 13-PTNLD9-TUMOR_peak_29221 chr2 179143935 179144273 + 9.26402 NA intron (NM_001201482, intron 1 of 23) intron (NM_001201482, intron 1 of 23) -40867 NM_145739 114880 Hs.318775 NM_032523 HPRD:09476 OSBPL6 ORP6 oxysterol binding protein-like 6 protein-coding 13-PTNLD9-TUMOR_peak_21753 chr17 62051583 62051766 + 9.26402 NA Intergenic Intergenic -1396 NM_000334 6329 Hs.46038 NM_000334 HPRD:04912 SCN4A HOKPP2|HYKPP|HYPP|NAC1A|Na(V)1.4|Nav1.4|SkM1 sodium channel, voltage-gated, type IV, alpha subunit protein-coding 13-PTNLD9-TUMOR_peak_50730 chr8 42046474 42046708 + 9.26402 NA intron (NM_000930, intron 3 of 13) intron (NM_000930, intron 3 of 13) 18603 NM_033011 5327 Hs.491582 NM_000930 HPRD:01419 PLAT T-PA|TPA plasminogen activator, tissue protein-coding 13-PTNLD9-TUMOR_peak_40686 chr5 39780523 39780718 + 9.26402 NA Intergenic Intergenic 260087 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LOC101926940 - uncharacterized LOC101926940 ncRNA 13-PTNLD9-TUMOR_peak_10538 chr11 71802460 71802660 + 9.26402 NA intron (NR_026886, intron 4 of 6) intron (NR_026886, intron 4 of 6) -10821 NM_006185 4926 Hs.325978 NM_006185 HPRD:01236 NUMA1 NUMA nuclear mitotic apparatus protein 1 protein-coding 13-PTNLD9-TUMOR_peak_47103 chr7 25783909 25784010 + 9.26402 NA Intergenic L1PA2|LINE|L1 96671 NR_046486 100873753 NR_046486 RNU6-16P RNU6-16 RNA, U6 small nuclear 16, pseudogene snRNA 13-PTNLD9-TUMOR_peak_51128 chr8 70968850 70969114 + 9.26402 NA intron (NM_024504, intron 6 of 7) AluSc8|SINE|Alu 14580 NM_024504 63978 Hs.736037 NM_024504 HPRD:11457 PRDM14 PFM11 PR domain containing 14 protein-coding 13-PTNLD9-TUMOR_peak_44865 chr6 37225736 37226061 + 9.26069 NA promoter-TSS (NM_001162900) promoter-TSS (NM_001162900) 33 NM_001286401 221468 Hs.520101 NM_145316 HPRD:12848 TMEM217 C6orf128|dJ355M6.2 transmembrane protein 217 protein-coding 13-PTNLD9-TUMOR_peak_4318 chr1 167789935 167790150 + 9.25958 NA intron (NM_001297772, intron 30 of 32) AluJb|SINE|Alu 93422 NM_001167749 55811 Hs.320892 NM_018417 HPRD:05549 ADCY10 HCA2|SAC|SACI|Sacy|hsAC adenylate cyclase 10 (soluble) protein-coding 13-PTNLD9-TUMOR_peak_55286 chrUn_gl000219 42385 42652 + 9.25343 NA Intergenic Intergenic 57124 NR_027436 283788 Hs.657131 NR_027436 LOC283788 - FSHD region gene 1 pseudogene pseudo 13-PTNLD9-TUMOR_peak_38715 chr4 82391652 82391843 + 9.25343 NA intron (NM_152545, intron 1 of 13) intron (NM_152545, intron 1 of 13) 1335 NM_001300735 153020 Hs.591696 NM_152545 HPRD:17955 RASGEF1B GPIG4 RasGEF domain family, member 1B protein-coding 13-PTNLD9-TUMOR_peak_6136 chr1 245132868 245133113 + 9.24614 NA promoter-TSS (NR_026587) promoter-TSS (NR_026587) -181 NM_032328 84288 Hs.134857 NM_032328 HPRD:14423 EFCAB2 CFAP200|DRC8 EF-hand calcium binding domain 2 protein-coding 13-PTNLD9-TUMOR_peak_8574 chr10 127380297 127380639 + 9.24417 NA intron (NR_033848, intron 2 of 4) intron (NR_033848, intron 2 of 4) 8656 NR_033848 283038 Hs.144911 NR_033848 ENSG00000228021 LOC283038 - uncharacterized LOC283038 ncRNA 13-PTNLD9-TUMOR_peak_47395 chr7 45924977 45925407 + 9.24417 NA Intergenic Intergenic -2767 NM_000596 3484 Hs.642938 NM_000596 HPRD:00897 IGFBP1 AFBP|IBP1|IGF-BP25|PP12|hIGFBP-1 insulin-like growth factor binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_22625 chr18 12208238 12208361 + 9.24417 NA intron (NR_049896, intron 2 of 4) L1PA2|LINE|L1 7521 NR_049896 497259 Hs.451609 NR_049896 C18orf61 - uncharacterized LOC497259 ncRNA 13-PTNLD9-TUMOR_peak_12327 chr12 25642014 25642131 + 9.24417 NA intron (NM_001145728, intron 9 of 9) L1PA2|LINE|L1 64145 NM_001145728 160492 Hs.44647 NM_152590 HPRD:08768 LMNTD1 IFLTD1|PAS1C1 lamin tail domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_48940 chr7 127347632 127347813 + 9.24417 NA intron (NM_014390, intron 9 of 23) intron (NM_014390, intron 9 of 23) 55520 NM_014390 27044 Hs.122523 NM_014390 HPRD:03714 SND1 TDRD11|p100 staphylococcal nuclease and tudor domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_18143 chr16 433368 433545 + 9.24417 NA intron (NR_024453, intron 2 of 2) intron (NR_024453, intron 2 of 2) 1215 NR_024453 100134368 Hs.621241 NR_024453 ENSG00000236829 LOC100134368 - uncharacterized LOC100134368 ncRNA 13-PTNLD9-TUMOR_peak_41759 chr5 112400615 112400941 + 9.24417 NA intron (NM_002387, intron 11 of 16) L1MC1|LINE|L1 88371 NM_001242377 167227 Hs.443875 NM_152624 HPRD:13125 DCP2 NUDT20 decapping mRNA 2 protein-coding 13-PTNLD9-TUMOR_peak_44819 chr6 36610990 36611090 + 9.24417 NA Intergenic Intergenic -20751 NR_037491 100500885 NR_037491 miRBase:MI0016433 MIR3925 - microRNA 3925 ncRNA 13-PTNLD9-TUMOR_peak_35601 chr3 123468696 123468856 + 9.24417 NA intron (NM_053025, intron 5 of 33) intron (NM_053025, intron 5 of 33) 60285 NR_046629 100873940 Hs.667316 NR_046629 MYLK-AS2 - MYLK antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_26146 chr2 11893703 11893861 + 9.24168 NA intron (NM_145693, intron 1 of 19) intron (NM_145693, intron 1 of 19) 7060 NM_145693 23175 Hs.467740 NM_145693 HPRD:09271 LPIN1 PAP1 lipin 1 protein-coding 13-PTNLD9-TUMOR_peak_3962 chr1 156667295 156667547 + 9.24168 NA Intergenic Intergenic 8038 NM_001878 1382 Hs.405662 NM_001878 HPRD:08353 CRABP2 CRABP-II|RBP6 cellular retinoic acid binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_25416 chr19 50400248 50400468 + 9.24069 NA promoter-TSS (NM_152899) promoter-TSS (NM_152899) -211 NM_152899 259307 Hs.574492 NM_152899 HPRD:17146 IL4I1 FIG1|LAAO|LAO interleukin 4 induced 1 protein-coding 13-PTNLD9-TUMOR_peak_34968 chr3 72682361 72682590 + 9.23948 NA Intergenic L4|LINE|RTE -186701 NM_012234 23429 Hs.7910 NM_012234 RYBP AAP1|DEDAF|YEAF1 RING1 and YY1 binding protein protein-coding 13-PTNLD9-TUMOR_peak_46522 chr6 167033463 167033736 + 9.23948 NA intron (NM_001006932, intron 2 of 21) intron (NM_001006932, intron 2 of 21) 7127 NM_021135 6196 Hs.655277 NM_021135 HPRD:03403 RPS6KA2 HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|pp90RSK3 ribosomal protein S6 kinase, 90kDa, polypeptide 2 protein-coding 13-PTNLD9-TUMOR_peak_43465 chr6 2791544 2791654 + 9.23948 NA Intergenic Intergenic 25933 NM_130395 56897 Hs.236828 NM_020135 HPRD:10494 WRNIP1 WHIP|bA420G6.2 Werner helicase interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_20160 chr16 89976783 89976915 + 9.23948 NA intron (NM_014972, intron 16 of 17) intron (NM_014972, intron 16 of 17) -7438 NM_002386 4157 Hs.513829 NM_002386 HPRD:01118 MC1R CMM5|MSH-R|SHEP2 melanocortin 1 receptor (alpha melanocyte stimulating hormone receptor) protein-coding 13-PTNLD9-TUMOR_peak_4731 chr1 184020697 184021079 + 9.23948 NA non-coding (NR_023349, exon 1 of 6) non-coding (NR_023349, exon 1 of 6) 103 NR_125335 116461 Hs.548197 NM_052965 HPRD:12292 TSEN15 C1orf19|sen15 TSEN15 tRNA splicing endonuclease subunit protein-coding 13-PTNLD9-TUMOR_peak_36257 chr3 143517147 143517304 + 9.23948 NA intron (NM_173653, intron 2 of 15) HERVH-int|LTR|ERV1 50148 NM_173653 285195 Hs.302257 NM_173653 HPRD:12226 SLC9A9 AUTS16|NHE9 solute carrier family 9, subfamily A (NHE9, cation proton antiporter 9), member 9 protein-coding 13-PTNLD9-TUMOR_peak_32413 chr21 43484437 43484620 + 9.23948 NA intron (NM_001199527, intron 1 of 21) MLT2B4|LTR|ERVL 1460 NM_001199527 89766 Hs.242520 NM_173568 HPRD:08775 UMODL1 - uromodulin-like 1 protein-coding 13-PTNLD9-TUMOR_peak_6399 chr10 6443609 6443994 + 9.23948 NA Intergenic Intergenic 75294 NR_040079 399715 NR_040079 ENSG00000215244 LOC399715 - uncharacterized LOC399715 ncRNA 13-PTNLD9-TUMOR_peak_26643 chr2 38947875 38948308 + 9.23948 NA intron (NM_138801, intron 4 of 6) MLT1G3|LTR|ERVL-MaLR 30545 NM_001031684 6432 Hs.309090 NM_006276 HPRD:08991 SRSF7 9G8|AAG3|SFRS7 serine/arginine-rich splicing factor 7 protein-coding 13-PTNLD9-TUMOR_peak_13504 chr12 95348123 95348271 + 9.23948 NA Intergenic Intergenic 49292 NM_018838 55967 Hs.506374 NM_018838 HPRD:16781 NDUFA12 B17.2|DAP13 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12 protein-coding 13-PTNLD9-TUMOR_peak_24115 chr19 13204731 13204855 + 9.23948 NA intron (NM_001271043, intron 10 of 10) intron (NM_001271043, intron 10 of 10) 9181 NM_005583 4066 Hs.46446 NM_005583 HPRD:01046 LYL1 bHLHa18 lymphoblastic leukemia associated hematopoiesis regulator 1 protein-coding 13-PTNLD9-TUMOR_peak_8879 chr11 4039998 4040115 + 9.23948 NA intron (NM_001277962, intron 2 of 12) L2a|LINE|L2 -75868 NM_001033 6240 Hs.445705 NM_001033 HPRD:01588 RRM1 R1|RIR1|RR1 ribonucleotide reductase M1 protein-coding 13-PTNLD9-TUMOR_peak_25402 chr19 50289848 50289985 + 9.23948 NA intron (NM_130787, intron 4 of 22) L2b|LINE|L2 -5207 NR_106857 102465479 NR_106857 MIR6799 hsa-mir-6799 microRNA 6799 ncRNA 13-PTNLD9-TUMOR_peak_1264 chr1 40072255 40072362 + 9.23948 NA Intergenic AluYa5|SINE|Alu -29787 NM_003819 8761 Hs.169900 NM_003819 HPRD:04557 PABPC4 APP-1|APP1|PABP4|iPABP poly(A) binding protein, cytoplasmic 4 (inducible form) protein-coding 13-PTNLD9-TUMOR_peak_5886 chr1 234342750 234342905 + 9.23948 NA intron (NM_173508, intron 2 of 7) intron (NM_173508, intron 2 of 7) -7130 NM_001300845 148641 Hs.158748 NM_173508 HPRD:15378 SLC35F3 - solute carrier family 35, member F3 protein-coding 13-PTNLD9-TUMOR_peak_49531 chr7 144521603 144521717 + 9.23469 NA intron (NM_022445, intron 2 of 8) L3|LINE|CR1 11486 NM_022445 27010 Hs.660232 NM_022445 HPRD:06967 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 13-PTNLD9-TUMOR_peak_36196 chr3 141121504 141121888 + 9.23469 NA intron (NM_001080412, intron 6 of 7) intron (NM_001080412, intron 6 of 7) 78641 NM_001080412 253461 Hs.518301 NM_152535 ENSG00000177311 ZBTB38 CIBZ|PPP1R171|ZNF921 zinc finger and BTB domain containing 38 protein-coding 13-PTNLD9-TUMOR_peak_19962 chr16 85044888 85045248 + 9.23469 NA promoter-TSS (NM_017740) promoter-TSS (NM_017740) 73 NM_017740 55625 Hs.461610 NM_017740 HPRD:15722 ZDHHC7 DHHC7|SERZ-B|SERZ1|ZNF370 zinc finger, DHHC-type containing 7 protein-coding 13-PTNLD9-TUMOR_peak_800 chr1 27325999 27326233 + 9.23469 NA intron (NM_001013642, intron 1 of 1) intron (NM_001013642, intron 1 of 1) 5921 NM_001013642 388610 Hs.355747 NM_001013642 HPRD:18384 TRNP1 C1orf225|TNRP TMF1-regulated nuclear protein 1 protein-coding 13-PTNLD9-TUMOR_peak_1565 chr1 45301665 45301798 + 9.23469 NA intron (NM_003738, intron 2 of 21) intron (NM_003738, intron 2 of 21) 6885 NM_001166292 8643 Hs.591497 NM_003738 HPRD:04722 PTCH2 PTC2 patched 2 protein-coding 13-PTNLD9-TUMOR_peak_3282 chr1 145156344 145156477 + 9.23282 NA intron (NM_001277444, intron 20 of 24) intron (NM_001277444, intron 20 of 24) -52703 NM_203458 388677 Hs.655156 NM_203458 HPRD:14833 NOTCH2NL N2N notch 2 N-terminal like protein-coding 13-PTNLD9-TUMOR_peak_45118 chr6 43958051 43958201 + 9.23199 NA Intergenic Intergenic -10211 NM_001171992 221416 Hs.531926 NM_153246 HPRD:14640 C6orf223 - chromosome 6 open reading frame 223 protein-coding 13-PTNLD9-TUMOR_peak_24194 chr19 14621365 14621488 + 9.22177 NA Intergenic Intergenic 7248 NM_001300914 3337 Hs.515210 NM_006145 HPRD:05198 DNAJB1 HSPF1|Hdj1|Hsp40|RSPH16B|Sis1 DnaJ (Hsp40) homolog, subfamily B, member 1 protein-coding 13-PTNLD9-TUMOR_peak_31978 chr21 18864486 18864645 + 9.21712 NA Intergenic Intergenic -20659 NM_001338 1525 Hs.627078 NM_001338 HPRD:11804 CXADR CAR|CAR4/6|HCAR coxsackie virus and adenovirus receptor protein-coding 13-PTNLD9-TUMOR_peak_43793 chr6 11745162 11745317 + 9.21712 NA intron (NM_032744, intron 3 of 5) intron (NM_032744, intron 3 of 5) 34041 NM_001143948 84830 Hs.126409 NM_032744 HPRD:12836 ADTRP AIG1L|C6orf105|dJ413H6.1 androgen-dependent TFPI-regulating protein protein-coding 13-PTNLD9-TUMOR_peak_2878 chr1 113058247 113058522 + 9.21712 NA intron (NM_001291880, intron 2 of 4) intron (NM_001291880, intron 2 of 4) 7014 NM_024494 7482 Hs.258575 NM_004185 WNT2B WNT13 wingless-type MMTV integration site family, member 2B protein-coding 13-PTNLD9-TUMOR_peak_41210 chr5 71187868 71188005 + 9.21712 NA Intergenic Intergenic 172946 NM_004291 9607 Hs.1707 NM_004291 HPRD:04006 CARTPT CART CART prepropeptide protein-coding 13-PTNLD9-TUMOR_peak_5162 chr1 204607237 204607404 + 9.21712 NA intron (NM_201630, intron 1 of 1) intron (NM_201630, intron 1 of 1) 47161 NM_006338 10446 Hs.26312 NM_006338 HPRD:16109 LRRN2 FIGLER7|GAC1|LRANK1|LRRN5 leucine rich repeat neuronal 2 protein-coding 13-PTNLD9-TUMOR_peak_33877 chr3 14245082 14245195 + 9.21712 NA Intergenic Intergenic 24910 NM_014463 27258 Hs.111632 NM_014463 LSM3 SMX4|USS2|YLR438C LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_13603 chr12 102804941 102805122 + 9.21712 NA intron (NM_001111284, intron 3 of 3) intron (NM_001111284, intron 3 of 3) 67398 NM_001111284 3479 Hs.160562 NM_000618 HPRD:00936 IGF1 IGF-I|IGF1A|IGFI insulin-like growth factor 1 (somatomedin C) protein-coding 13-PTNLD9-TUMOR_peak_1166 chr1 37301046 37301289 + 9.21712 NA intron (NM_000831, intron 10 of 15) LTR16E2|LTR|ERVL 198677 NM_000831 2899 Hs.128848 NM_000831 HPRD:00691 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate receptor, ionotropic, kainate 3 protein-coding 13-PTNLD9-TUMOR_peak_39828 chr4 169401394 169401682 + 9.21712 NA 5' UTR (NM_001012967, exon 1 of 38) 5' UTR (NM_001012967, exon 1 of 38) 127 NM_001291510 91351 Hs.535011 NM_001012967 ENSG00000181381 DDX60L - DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like protein-coding 13-PTNLD9-TUMOR_peak_40872 chr5 54252767 54253043 + 9.21712 NA Intergenic Intergenic 28509 NM_007036 11082 Hs.129944 NM_007036 HPRD:03310 ESM1 endocan endothelial cell-specific molecule 1 protein-coding 13-PTNLD9-TUMOR_peak_42621 chr5 149643561 149643799 + 9.21712 NA intron (NM_171825, intron 3 of 17) MER5A1|DNA|hAT-Charlie 25723 NM_015981 815 Hs.743976 NM_015981 HPRD:06532 CAMK2A CAMKA calcium/calmodulin-dependent protein kinase II alpha protein-coding 13-PTNLD9-TUMOR_peak_16435 chr14 91112406 91112668 + 9.21712 NA intron (NR_110134, intron 2 of 4) LTR86B2|LTR|ERVL 3564 NR_110134 101928909 Hs.662545 NR_110134 ENSG00000259163 LOC101928909 - uncharacterized LOC101928909 ncRNA 13-PTNLD9-TUMOR_peak_42511 chr5 146683671 146683861 + 9.21712 NA intron (NM_001112724, intron 4 of 12) intron (NM_001112724, intron 4 of 12) 69187 NM_145001 202374 Hs.585069 NM_145001 HPRD:15445 STK32A YANK1 serine/threonine kinase 32A protein-coding 13-PTNLD9-TUMOR_peak_3870 chr1 155386217 155386447 + 9.21712 NA intron (NM_018489, intron 5 of 27) AluSx1|SINE|Alu -16639 NR_034180 645682 Hs.632482 NR_034180 ENSG00000237872 POU5F1P4 Oct4-pg4|POU5FLC1 POU class 5 homeobox 1 pseudogene 4 pseudo 13-PTNLD9-TUMOR_peak_10404 chr11 68065323 68065512 + 9.21712 NA Intergenic Intergenic -14660 NM_001291902 4041 Hs.6347 NM_002335 HPRD:04616 LRP5 BMND1|EVR1|EVR4|HBM|LR3|LRP-5|LRP7|OPPG|OPS|OPTA1|VBCH2 low density lipoprotein receptor-related protein 5 protein-coding 13-PTNLD9-TUMOR_peak_32279 chr21 38580041 38580197 + 9.21712 NA promoter-TSS (NR_026719) promoter-TSS (NR_026719) -685 NR_026719 257203 Hs.505159 NM_148675 HPRD:10925 DSCR9 NCRNA00038 Down syndrome critical region gene 9 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_13727 chr12 108306332 108306717 + 9.21712 NA Intergenic Intergenic -8976 NR_037629 728739 Hs.741995 NR_037629 LOC728739 - programmed cell death 2 pseudogene pseudo 13-PTNLD9-TUMOR_peak_49432 chr7 142134931 142135166 + 9.21580 NA Intergenic Intergenic -162980 NR_036483 207147 Hs.604069 NR_036483 TRY2P - trypsinogen-like pseudogene pseudo 13-PTNLD9-TUMOR_peak_28037 chr2 111370767 111370934 + 9.21580 NA Intergenic AluSg|SINE|Alu -34541 NM_032260 84220 Hs.469630 NM_005054 HPRD:04128 RGPD5 BS-63|BS63|HEL161|RGP5 RANBP2-like and GRIP domain containing 5 protein-coding 13-PTNLD9-TUMOR_peak_33815 chr3 12909587 12909790 + 9.21052 NA Intergenic LTR13_|LTR|ERVK -26607 NM_001007073 6161 Hs.265174 NM_000994 HPRD:17995 RPL32 L32 ribosomal protein L32 protein-coding 13-PTNLD9-TUMOR_peak_46856 chr7 7030190 7030364 + 9.21052 NA Intergenic HERVS71-int|LTR|ERV1 106140 NR_034022 100131257 Hs.551110 NR_034022 LOC100131257 - zinc finger protein 655 pseudogene pseudo 13-PTNLD9-TUMOR_peak_23031 chr18 43209397 43209521 + 9.21052 NA intron (NM_007163, intron 4 of 19) intron (NM_007163, intron 4 of 19) 14693 NM_007163 8170 Hs.710927 NM_007163 HPRD:03366 SLC14A2 HUT2|UT-A2|UT2|UTA|UTR|hUT-A6 solute carrier family 14 (urea transporter), member 2 protein-coding 13-PTNLD9-TUMOR_peak_32868 chr22 22129499 22129668 + 9.20707 NA intron (NM_002745, intron 6 of 8) intron (NM_002745, intron 6 of 8) -39512 NM_013313 29799 Hs.517436 NM_013313 HPRD:16277 YPEL1 - yippee-like 1 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_36293 chr3 146686001 146686180 + 9.20707 NA Intergenic MLT1D-int|LTR|ERVL-MaLR -362087 NM_001085420 389158 Hs.254692 NM_001085420 ENSG00000231213 PLSCR5 - phospholipid scramblase family, member 5 protein-coding 13-PTNLD9-TUMOR_peak_50514 chr8 29829499 29829627 + 9.20707 NA Intergenic MLT1H|LTR|ERVL-MaLR -14699 NR_036104 100422876 NR_036104 miRBase:MI0014175 MIR3148 - microRNA 3148 ncRNA 13-PTNLD9-TUMOR_peak_51086 chr8 67624660 67624992 + 9.20707 NA 5' UTR (NM_001033578, exon 1 of 17) 5' UTR (NM_001033578, exon 1 of 17) 173 NM_001033578 23678 Hs.613417 NM_013257 HPRD:06349 SGK3 CISK|SGK2|SGKL serum/glucocorticoid regulated kinase family, member 3 protein-coding 13-PTNLD9-TUMOR_peak_44953 chr6 40879946 40880378 + 9.20707 NA intron (NR_110873, intron 1 of 5) LTR67B|LTR|ERVL 110857 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 13-PTNLD9-TUMOR_peak_5503 chr1 223308648 223308817 + 9.20707 NA intron (NM_003268, intron 3 of 5) intron (NM_003268, intron 3 of 5) 7892 NM_003268 7100 Hs.604542 NM_003268 HPRD:04326 TLR5 MELIOS|SLE1|SLEB1|TIL3 toll-like receptor 5 protein-coding 13-PTNLD9-TUMOR_peak_17883 chr15 85471540 85471655 + 9.20707 NA intron (NM_001287761, intron 11 of 14) intron (NM_001287761, intron 11 of 14) 43705 NM_001287762 9154 Hs.459187 NM_004213 HPRD:07068 SLC28A1 CNT1|HCNT1 solute carrier family 28 (concentrative nucleoside transporter), member 1 protein-coding 13-PTNLD9-TUMOR_peak_3696 chr1 153005406 153005657 + 9.20707 NA TTS (NM_003125) TTS (NM_003125) 1852 NM_003125 6699 Hs.1076 NM_003125 HPRD:01648 SPRR1B CORNIFIN|GADD33|SPRR1 small proline-rich protein 1B protein-coding 13-PTNLD9-TUMOR_peak_37586 chr4 1685204 1685299 + 9.20303 NA intron (NM_001174070, intron 1 of 4) HY1|scRNA|scRNA 467 NM_001013622 152877 Hs.143314 NM_001013622 HPRD:12900 FAM53A DNTNP family with sequence similarity 53, member A protein-coding 13-PTNLD9-TUMOR_peak_23477 chr18 74064040 74064239 + 9.20083 NA Intergenic Intergenic 143007 NM_014643 9658 Hs.436973 NM_014643 ENSG00000101493 ZNF516 HsT287 zinc finger protein 516 protein-coding 13-PTNLD9-TUMOR_peak_48027 chr7 75807563 75807846 + 9.20083 NA Intergenic Intergenic -23507 NM_001110199 222183 Hs.511025 NM_001039212 HPRD:08219 SRRM3 - serine/arginine repetitive matrix 3 protein-coding 13-PTNLD9-TUMOR_peak_28971 chr2 165866124 165866264 + 9.20083 NA Intergenic Intergenic -54159 NM_173512 151258 Hs.658702 NM_173512 HPRD:08267 SLC38A11 AVT2 solute carrier family 38, member 11 protein-coding 13-PTNLD9-TUMOR_peak_23581 chr19 752720 752893 + 9.20083 NA intron (NM_173481, intron 1 of 4) intron (NM_173481, intron 1 of 4) 1660 NM_173481 126353 Hs.439180 NM_173481 HPRD:12695 MISP C19orf21 mitotic spindle positioning protein-coding 13-PTNLD9-TUMOR_peak_27708 chr2 96675779 96675950 + 9.19839 NA promoter-TSS (NR_003698) promoter-TSS (NR_003698) -435 NR_003698 729234 Hs.720108 NR_003698 ENSG00000231584 FAHD2CP - fumarylacetoacetate hydrolase domain containing 2C, pseudogene pseudo 13-PTNLD9-TUMOR_peak_20790 chr17 27966374 27966793 + 9.19839 NA intron (NM_001282129, intron 14 of 15) intron (NM_001282129, intron 14 of 15) -18142 NM_032854 84940 Hs.143046 NM_032854 HPRD:08607 CORO6 - coronin 6 protein-coding 13-PTNLD9-TUMOR_peak_19340 chr16 53070711 53071006 + 9.19839 NA Intergenic AluSc5|SINE|Alu -18087 NM_025134 80205 Hs.59159 NM_025134 HPRD:08570 CHD9 AD013|CReMM|KISH2|PRIC320 chromodomain helicase DNA binding protein 9 protein-coding 13-PTNLD9-TUMOR_peak_37889 chr4 8453220 8453508 + 9.19839 NA intron (NM_152544, intron 3 of 10) intron (NM_152544, intron 3 of 10) 10832 NM_152544 152992 Hs.566191 NM_024950 HPRD:08760 TRMT44 C4orf23|METTL19|TRM44 tRNA methyltransferase 44 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_5745 chr1 228974346 228974462 + 9.19839 NA Intergenic Intergenic 103580 NM_021205 58480 Hs.647774 NM_021205 HPRD:06965 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 13-PTNLD9-TUMOR_peak_39100 chr4 113218375 113218563 + 9.19839 NA promoter-TSS (NM_025144) promoter-TSS (NM_025144) -30 NM_001253884 80216 Hs.652825 NM_025144 HPRD:09554 ALPK1 8430410J10Rik|LAK alpha-kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_32008 chr21 22572523 22572725 + 9.19839 NA intron (NM_004540, intron 1 of 17) intron (NM_004540, intron 1 of 17) -85198 NR_046937 100873771 NR_046937 ENSG00000222791 RNU6-67P RNU6-67 RNA, U6 small nuclear 67, pseudogene snRNA 13-PTNLD9-TUMOR_peak_24271 chr19 16404422 16404802 + 9.19839 NA Intergenic Intergenic -31039 NM_016270 10365 Hs.744182 NM_016270 HPRD:03602 KLF2 LKLF Kruppel-like factor 2 protein-coding 13-PTNLD9-TUMOR_peak_40740 chr5 43105790 43106032 + 9.19839 NA Intergenic Intergenic -15092 NR_123719 7690 Hs.535804 NM_003432 ENSG00000172262 ZNF131 ZBTB35|pHZ-10 zinc finger protein 131 protein-coding 13-PTNLD9-TUMOR_peak_862 chr1 28680751 28681006 + 9.19839 NA Intergenic Intergenic -15215 NM_001048183 65979 Hs.225641 NM_023923 HPRD:07816 PHACTR4 PPP1R124 phosphatase and actin regulator 4 protein-coding 13-PTNLD9-TUMOR_peak_4340 chr1 168452873 168453091 + 9.19839 NA Intergenic LTR89|LTR|ERVL? 60253 NM_003175 6846 Hs.458346 NM_003175 HPRD:05317 XCL2 SCM-1b|SCM1B|SCYC2 chemokine (C motif) ligand 2 protein-coding 13-PTNLD9-TUMOR_peak_37480 chr3 197236993 197237215 + 9.19839 NA 3' UTR (NM_203315, exon 7 of 7) 3' UTR (NM_203315, exon 7 of 7) 45754 NM_203314 622 Hs.274539 NM_004051 HPRD:04344 BDH1 BDH|SDR9C1 3-hydroxybutyrate dehydrogenase, type 1 protein-coding 13-PTNLD9-TUMOR_peak_32911 chr22 23557560 23557798 + 9.19839 NA intron (NM_004327, intron 1 of 22) intron (NM_004327, intron 1 of 22) 35127 NM_004327 613 Hs.517461 NM_004327 HPRD:01044 BCR ALL|BCR1|CML|D22S11|D22S662|PHL breakpoint cluster region protein-coding 13-PTNLD9-TUMOR_peak_8414 chr10 118764196 118764332 + 9.19839 NA intron (NM_001258300, intron 2 of 17) CpG 824 NM_001127211 57698 Hs.501140 NM_018330 HPRD:11155 KIAA1598 - KIAA1598 protein-coding 13-PTNLD9-TUMOR_peak_19670 chr16 70031264 70031396 + 9.19122 NA intron (NR_003610, intron 16 of 25) intron (NR_003610, intron 16 of 25) -32919 NR_036265 100422922 NR_036265 miRBase:MI0015977 MIR1972-2 - microRNA 1972-2 ncRNA 13-PTNLD9-TUMOR_peak_4002 chr1 157971878 157972035 + 9.18324 NA intron (NM_001286349, intron 1 of 12) intron (NM_001286349, intron 1 of 12) 8893 NM_018240 55243 Hs.272234 NM_018240 HPRD:06306 KIRREL NEPH1 kin of IRRE like (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_50192 chr8 19128876 19129020 + 9.17951 NA Intergenic Intergenic -25916 NR_038919 100128993 Hs.697742 NR_038919 LOC100128993 - uncharacterized LOC100128993 ncRNA 13-PTNLD9-TUMOR_peak_23782 chr19 6460588 6460792 + 9.17951 NA promoter-TSS (NM_024103) promoter-TSS (NM_024103) -909 NM_024103 79085 Hs.356231 NM_024103 HPRD:16381 SLC25A23 APC2|MCSC2|SCaMC-3 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23 protein-coding 13-PTNLD9-TUMOR_peak_36703 chr3 170746019 170746473 + 9.17951 NA Intergenic CpG -1478 NM_000340 6514 Hs.167584 NM_000340 HPRD:00685 SLC2A2 GLUT2 solute carrier family 2 (facilitated glucose transporter), member 2 protein-coding 13-PTNLD9-TUMOR_peak_370 chr1 10490361 10490582 + 9.17951 NA promoter-TSS (NR_037187) promoter-TSS (NR_037187) 312 NM_199294 378708 Hs.412311 NM_199294 APITD1 CENP-S|CENPS|FAAP16|MHF1 apoptosis-inducing, TAF9-like domain 1 protein-coding 13-PTNLD9-TUMOR_peak_1616 chr1 46663896 46664239 + 9.17951 NA promoter-TSS (NM_017739) promoter-TSS (NM_017739) 54 NM_017739 55624 Hs.525134 NM_017739 HPRD:09493 POMGNT1 GNTI.2|GnT I.2|LGMD2O|MEB|MGAT1.2|gnT-I.2 protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) protein-coding 13-PTNLD9-TUMOR_peak_37782 chr4 6642933 6643076 + 9.17411 NA intron (NM_001272053, intron 2 of 2) CpG 1186 NM_033296 93621 Hs.406590 NM_033296 HPRD:17589 MRFAP1 PAM14|PGR1 Morf4 family associated protein 1 protein-coding 13-PTNLD9-TUMOR_peak_3546 chr1 150240715 150240891 + 9.17411 NA intron (NM_001077628, intron 1 of 6) intron (NM_001077628, intron 1 of 6) 806 NM_001243771 51107 Hs.108408 NM_016022 ENSG00000117362 APH1A 6530402N02Rik|APH-1|APH-1A|CGI-78 APH1A gamma secretase subunit protein-coding 13-PTNLD9-TUMOR_peak_1796 chr1 53387164 53387272 + 9.17089 NA intron (NM_001198961, intron 1 of 9) CpG 228 NM_018281 55268 Hs.476319 NM_018281 HPRD:07718 ECHDC2 - enoyl CoA hydratase domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_48389 chr7 97185505 97185708 + 9.17089 NA Intergenic Intergenic -175665 NM_003182 6863 Hs.2563 NM_003182 HPRD:08876 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin, precursor 1 protein-coding 13-PTNLD9-TUMOR_peak_4212 chr1 163852002 163852133 + 9.17089 NA Intergenic Intergenic -459086 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3, subunit J pseudogene pseudo 13-PTNLD9-TUMOR_peak_48804 chr7 107894262 107894411 + 9.17089 NA intron (NM_005010, intron 3 of 27) intron (NM_005010, intron 3 of 27) -13722 NM_001037132 4897 Hs.21422 NM_005010 HPRD:07207 NRCAM - neuronal cell adhesion molecule protein-coding 13-PTNLD9-TUMOR_peak_20271 chr17 2863510 2863883 + 9.17089 NA intron (NM_001100398, intron 4 of 23) intron (NM_001100398, intron 4 of 23) 5493 NR_110818 101927911 Hs.626373 NR_110818 ENSG00000262884 LOC101927911 - uncharacterized LOC101927911 ncRNA 13-PTNLD9-TUMOR_peak_47430 chr7 47500876 47501016 + 9.17089 NA intron (NM_022748, intron 4 of 30) intron (NM_022748, intron 4 of 30) 120796 NM_022748 64759 Hs.520814 NM_022748 ENSG00000136205 TNS3 TEM6|TENS1 tensin 3 protein-coding 13-PTNLD9-TUMOR_peak_24255 chr19 16112934 16113151 + 9.17089 NA Intergenic HERV3-int|LTR|ERV1 -13402 NR_026828 126536 Hs.131824 NR_026828 LINC00661 - long intergenic non-protein coding RNA 661 ncRNA 13-PTNLD9-TUMOR_peak_36575 chr3 159523030 159523175 + 9.17089 NA intron (NM_014575, intron 2 of 7) intron (NM_014575, intron 2 of 7) -34548 NM_001197109 29970 Hs.134665 NM_014575 HPRD:15302 SCHIP1 SCHIP-1 schwannomin interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_41809 chr5 115264539 115264713 + 9.17089 NA Intergenic LTR10F|LTR|ERV1 -33525 NM_173800 206338 Hs.98288 NM_173800 HPRD:07118 AQPEP APQ|LVRN laeverin protein-coding 13-PTNLD9-TUMOR_peak_38445 chr4 56475575 56475830 + 9.17089 NA intron (NM_001292045, intron 2 of 8) intron (NM_001292045, intron 2 of 8) -17323 NM_152401 132954 Hs.223712 NM_152401 HPRD:15109 PDCL2 GCPHLP phosducin-like 2 protein-coding 13-PTNLD9-TUMOR_peak_14539 chr13 31248143 31248334 + 9.17089 NA Intergenic CpG -39377 NM_001204406 241 Hs.507658 NM_001629 HPRD:04742 ALOX5AP FLAP arachidonate 5-lipoxygenase-activating protein protein-coding 13-PTNLD9-TUMOR_peak_10736 chr11 78117667 78117824 + 9.17089 NA intron (NM_080491, intron 1 of 9) L1MDa|LINE|L1 11123 NM_080491 9846 Hs.429434 NM_012296 HPRD:05866 GAB2 - GRB2-associated binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_23190 chr18 48499829 48499959 + 9.17089 NA intron (NM_018696, intron 1 of 3) intron (NM_018696, intron 1 of 3) 5507 NM_018696 55520 Hs.657360 NM_018696 HPRD:16275 ELAC1 D29 elaC ribonuclease Z 1 protein-coding 13-PTNLD9-TUMOR_peak_18799 chr16 23847165 23847293 + 9.17089 NA promoter-TSS (NM_002738) promoter-TSS (NM_002738) -71 NM_002738 5579 Hs.460355 NM_002738 HPRD:01499 PRKCB PKC-beta|PKCB|PRKCB1|PRKCB2 protein kinase C, beta protein-coding 13-PTNLD9-TUMOR_peak_34117 chr3 25831483 25831931 + 9.17089 NA promoter-TSS (NM_001145294) promoter-TSS (NM_001145294) 144 NR_026937 54995 Hs.55781 NM_017897 HPRD:07931 OXSM FASN2D|KASI|KS 3-oxoacyl-ACP synthase, mitochondrial protein-coding 13-PTNLD9-TUMOR_peak_16659 chr14 104692074 104692418 + 9.17089 NA Intergenic Intergenic 87186 NM_015656 26153 Hs.134970 NM_015656 ENSG00000066735 KIF26A - kinesin family member 26A protein-coding 13-PTNLD9-TUMOR_peak_28080 chr2 112493937 112494123 + 9.17089 NA Intergenic Intergenic 147711 NM_022662 64682 Hs.436527 NM_022662 HPRD:09769 ANAPC1 APC1|MCPR|TSG24 anaphase promoting complex subunit 1 protein-coding 13-PTNLD9-TUMOR_peak_46810 chr7 6035246 6035499 + 9.17089 NA intron (NR_003085, intron 7 of 14) intron (NR_003085, intron 7 of 14) 13365 NM_000535 5395 Hs.632637 NM_000535 HPRD:02598 PMS2 HNPCC4|PMS2CL|PMSL2 PMS2 postmeiotic segregation increased 2 (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_56494 chrX 131157152 131157284 + 9.17089 NA promoter-TSS (NM_001042453) promoter-TSS (NM_001042453) -27 NM_001042453 51765 Hs.444247 NM_016542 HPRD:06663 MST4 MASK serine/threonine protein kinase MST4 protein-coding 13-PTNLD9-TUMOR_peak_21905 chr17 70599142 70599387 + 9.17089 NA non-coding (NR_033876, exon 4 of 5) non-coding (NR_033876, exon 4 of 5) -10321 NR_036488 100499467 Hs.157726 NR_036488 LINC00673 LINC00511 long intergenic non-protein coding RNA 673 ncRNA 13-PTNLD9-TUMOR_peak_54632 chr9 123333777 123333997 + 9.17089 NA intron (NR_073558, intron 2 of 37) intron (NR_073558, intron 2 of 37) 8561 NR_073556 55755 Hs.269560 NM_018249 HPRD:09740 CDK5RAP2 C48|Cep215|MCPH3 CDK5 regulatory subunit associated protein 2 protein-coding 13-PTNLD9-TUMOR_peak_29778 chr2 216877250 216877453 + 9.17027 NA intron (NM_018000, intron 1 of 4) intron (NM_018000, intron 1 of 4) 995 NM_018000 55686 Hs.620391 NM_018000 MREG DSU|WDT2 melanoregulin protein-coding 13-PTNLD9-TUMOR_peak_16249 chr14 74318554 74318736 + 9.17027 NA promoter-TSS (NM_001146155) promoter-TSS (NM_001146155) 24 NM_152444 145482 Hs.632344 NM_152444 HPRD:09782 PTGR2 HEL-S-298|PGR2|ZADH1 prostaglandin reductase 2 protein-coding 13-PTNLD9-TUMOR_peak_311 chr1 9170719 9171049 + 9.17027 NA intron (NM_024980, intron 2 of 3) intron (NM_024980, intron 2 of 3) 18345 NM_024980 80045 Hs.632367 NM_024980 GPR157 - G protein-coupled receptor 157 protein-coding 13-PTNLD9-TUMOR_peak_41243 chr5 72574604 72574847 + 9.17027 NA Intergenic Intergenic 105702 NM_153217 134288 Hs.508588 NM_153217 HPRD:14432 TMEM174 - transmembrane protein 174 protein-coding 13-PTNLD9-TUMOR_peak_1639 chr1 47109014 47109249 + 9.17027 NA intron (NM_001243728, intron 7 of 8) intron (NM_001243728, intron 7 of 8) 22419 NM_001256418 64756 Hs.100874 NM_022745 HPRD:12332 ATPAF1 ATP11|ATP11p ATP synthase mitochondrial F1 complex assembly factor 1 protein-coding 13-PTNLD9-TUMOR_peak_35977 chr3 133310288 133310612 + 9.17027 NA Intergenic L1MB7|LINE|L1 17172 NM_001282765 55573 Hs.518265 NM_017548 HPRD:13627 CDV3 H41 CDV3 homolog (mouse) protein-coding 13-PTNLD9-TUMOR_peak_206 chr1 6580130 6580284 + 9.17027 NA promoter-TSS (NM_198681) promoter-TSS (NM_198681) -86 NM_198681 57449 Hs.284232 NM_020631 HPRD:11104 PLEKHG5 CMTRIC|DSMA4|GEF720|Syx|Tech pleckstrin homology domain containing, family G (with RhoGef domain) member 5 protein-coding 13-PTNLD9-TUMOR_peak_42738 chr5 154071909 154072084 + 9.17027 NA Intergenic MIRb|SINE|MIR -20466 NM_015315 23367 Hs.292078 NM_015315 HPRD:11225 LARP1 LARP La ribonucleoprotein domain family, member 1 protein-coding 13-PTNLD9-TUMOR_peak_16586 chr14 100905514 100905838 + 9.17027 NA intron (NM_001161476, intron 2 of 6) intron (NM_001161476, intron 2 of 6) 62843 NM_024515 79446 Hs.497600 NM_024515 HPRD:14649 WDR25 C14orf67 WD repeat domain 25 protein-coding 13-PTNLD9-TUMOR_peak_18910 chr16 29086253 29086373 + 9.17027 NA non-coding (NR_003369, exon 1 of 17) non-coding (NR_003369, exon 1 of 17) 150 NR_003369 653390 Hs.720348 NR_003369 ENSG00000103472 RRN3P2 - RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_30740 chr20 30287052 30287230 + 9.16719 NA intron (NM_001191, intron 2 of 2) intron (NM_001191, intron 2 of 2) 23515 NM_138578 598 Hs.516966 NM_001191 HPRD:02497 BCL2L1 BCL-XL/S|BCL2L|BCLX|BCLXL|BCLXS|Bcl-X|PPP1R52|bcl-xL|bcl-xS BCL2-like 1 protein-coding 13-PTNLD9-TUMOR_peak_43992 chr6 17865532 17865761 + 9.16669 NA intron (NM_001105568, intron 4 of 37) intron (NM_001105568, intron 4 of 37) 122208 NM_001105568 63971 Hs.94499 NM_022113 HPRD:09256 KIF13A RBKIN|bA500C11.2 kinesin family member 13A protein-coding 13-PTNLD9-TUMOR_peak_51065 chr8 67036555 67036674 + 9.16669 NA Intergenic L2c|LINE|L2 -2664 NM_184087 84675 Hs.85524 NM_033058 HPRD:05927 TRIM55 MURF-2|RNF29|muRF2 tripartite motif containing 55 protein-coding 13-PTNLD9-TUMOR_peak_3959 chr1 156659381 156659632 + 9.16669 NA Intergenic Intergenic -12317 NM_006617 10763 Hs.527971 NM_006617 HPRD:09020 NES - nestin protein-coding 13-PTNLD9-TUMOR_peak_1573 chr1 45480265 45480370 + 9.16310 NA intron (NR_036510, intron 7 of 9) intron (NR_036510, intron 7 of 9) 2512 NR_036510 7389 Hs.78601 NM_000374 HPRD:01441 UROD PCT|UPD uroporphyrinogen decarboxylase protein-coding 13-PTNLD9-TUMOR_peak_5192 chr1 205267702 205267887 + 9.16036 NA Intergenic Intergenic 23089 NM_030952 81788 Hs.497512 NM_030952 HPRD:12172 NUAK2 SNARK NUAK family, SNF1-like kinase, 2 protein-coding 13-PTNLD9-TUMOR_peak_2755 chr1 109797327 109797438 + 9.16031 NA intron (NM_001408, intron 1 of 33) intron (NM_001408, intron 1 of 33) 4741 NM_001408 1952 Hs.57652 NM_001408 HPRD:05040 CELSR2 CDHF10|EGFL2|Flamingo1|MEGF3 cadherin, EGF LAG seven-pass G-type receptor 2 protein-coding 13-PTNLD9-TUMOR_peak_27002 chr2 60808868 60809174 + 9.15712 NA Intergenic CpG -28388 NM_138559 53335 Hs.370549 NM_018014 HPRD:05949 BCL11A BCL11A-L|BCL11A-S|BCL11A-XL|BCL11a-M|CTIP1|EVI9|HBFQTL5|ZNF856 B-cell CLL/lymphoma 11A (zinc finger protein) protein-coding 13-PTNLD9-TUMOR_peak_10520 chr11 71456845 71457073 + 9.15712 NA Intergenic HERVE-int|LTR|ERV1 -41598 NM_018172 55199 Hs.567527 NM_018172 HPRD:13337 FAM86C1 FAM86C family with sequence similarity 86, member C1 protein-coding 13-PTNLD9-TUMOR_peak_14994 chr13 99302721 99302999 + 9.15712 NA Intergenic Intergenic -73455 NM_001286649 8428 Hs.508514 NM_003576 HPRD:10385 STK24 HEL-S-95|MST3|MST3B|STE20|STK3 serine/threonine kinase 24 protein-coding 13-PTNLD9-TUMOR_peak_634 chr1 22196266 22196589 + 9.15712 NA intron (NM_001291860, intron 33 of 96) intron (NM_001291860, intron 33 of 96) 57669 NM_001013693 401944 Hs.745158 NM_001013693 HPRD:18436 LDLRAD2 - low density lipoprotein receptor class A domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_10406 chr11 68121753 68121893 + 9.15712 NA intron (NM_001291902, intron 2 of 22) intron (NM_001291902, intron 2 of 22) 41746 NM_002335 4041 Hs.6347 NM_002335 HPRD:04616 LRP5 BMND1|EVR1|EVR4|HBM|LR3|LRP-5|LRP7|OPPG|OPS|OPTA1|VBCH2 low density lipoprotein receptor-related protein 5 protein-coding 13-PTNLD9-TUMOR_peak_34479 chr3 48106092 48106310 + 9.15712 NA intron (NM_002375, intron 1 of 18) Tigger3c|DNA|TcMar-Tigger 24568 NM_030885 4134 Hs.517949 NM_002375 HPRD:01141 MAP4 - microtubule-associated protein 4 protein-coding 13-PTNLD9-TUMOR_peak_33770 chr3 11330850 11331017 + 9.15712 NA intron (NM_001144912, intron 1 of 16) intron (NM_001144912, intron 1 of 16) 16923 NM_001144912 10533 Hs.38032 NM_006395 HPRD:12293 ATG7 APG7-LIKE|APG7L|GSA7 autophagy related 7 protein-coding 13-PTNLD9-TUMOR_peak_26893 chr2 48711038 48711318 + 9.15712 NA intron (NR_024188, intron 13 of 21) LTR47B|LTR|ERVL 43270 NR_024188 129285 Hs.654619 NM_152994 HPRD:17294 PPP1R21 CCDC128|KLRAQ1 protein phosphatase 1, regulatory subunit 21 protein-coding 13-PTNLD9-TUMOR_peak_14101 chr12 122139727 122139857 + 9.15712 NA Intergenic MIR3|SINE|MIR -10866 NM_001080825 144404 Hs.644504 NM_001080825 ENSG00000188735 TMEM120B - transmembrane protein 120B protein-coding 13-PTNLD9-TUMOR_peak_18742 chr16 21831687 21831829 + 9.15712 NA Intergenic CpG -1263 NR_003370 730092 Hs.31290 NR_003370 RRN3P1 - RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_30005 chr2 232461915 232462130 + 9.15712 NA Intergenic Intergenic 4447 NM_152614 165100 Hs.98104 NM_152614 HPRD:14602 C2orf57 - chromosome 2 open reading frame 57 protein-coding 13-PTNLD9-TUMOR_peak_34337 chr3 42132733 42132878 + 9.15712 NA promoter-TSS (NM_001042646) promoter-TSS (NM_001042646) 59 NM_001265608 22906 Hs.535711 NM_014965 HPRD:09732 TRAK1 MILT1|OIP106 trafficking protein, kinesin binding 1 protein-coding 13-PTNLD9-TUMOR_peak_36201 chr3 141173838 141174084 + 9.15712 NA Intergenic Intergenic -31965 NM_006506 5922 Hs.98445 NM_006506 ENSG00000155903 RASA2 GAP1M RAS p21 protein activator 2 protein-coding 13-PTNLD9-TUMOR_peak_2958 chr1 115834377 115834491 + 9.15712 NA intron (NM_002506, intron 2 of 2) intron (NM_002506, intron 2 of 2) 46423 NM_002506 4803 Hs.2561 NM_002506 HPRD:08874 NGF Beta-NGF|HSAN5|NGFB nerve growth factor (beta polypeptide) protein-coding 13-PTNLD9-TUMOR_peak_34636 chr3 51989983 51990248 + 9.15712 NA exon (NM_080865, exon 1 of 1) exon (NM_080865, exon 1 of 1) 785 NM_080865 118442 Hs.232213 NM_080865 HPRD:06078 GPR62 GPCR8|KPG_005 G protein-coupled receptor 62 protein-coding 13-PTNLD9-TUMOR_peak_5763 chr1 229359432 229359569 + 9.15712 NA Intergenic Intergenic -47309 NM_001271998 5867 Hs.296169 NM_004578 HPRD:01541 RAB4A HRES-1|HRES-1/RAB4|HRES1|RAB4 RAB4A, member RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_19634 chr16 68573088 68573243 + 9.15712 NA promoter-TSS (NM_133458) promoter-TSS (NM_133458) -496 NM_133458 146198 Hs.461074 NM_133458 HPRD:18729 ZFP90 FIK|NK10|ZNF756 ZFP90 zinc finger protein protein-coding 13-PTNLD9-TUMOR_peak_43841 chr6 13348706 13349147 + 9.15712 NA Intergenic AluSq2|SINE|Alu -20111 NM_001258457 51256 Hs.484678 NM_016495 HPRD:18165 TBC1D7 MGCPH|PIG51|TBC7 TBC1 domain family, member 7 protein-coding 13-PTNLD9-TUMOR_peak_9534 chr11 35184895 35185046 + 9.15712 NA intron (NM_001202555, intron 1 of 9) intron (NM_001202555, intron 1 of 9) 24553 NM_001202556 960 Hs.502328 NM_000610 HPRD:00115 CD44 CDW44|CSPG8|ECMR-III|HCELL|HUTCH-I|IN|LHR|MC56|MDU2|MDU3|MIC4|Pgp1 CD44 molecule (Indian blood group) protein-coding 13-PTNLD9-TUMOR_peak_23369 chr18 60251639 60251784 + 9.15712 NA Intergenic Intergenic 61053 NM_017742 54877 Hs.114191 NM_017742 HPRD:11696 ZCCHC2 C18orf49 zinc finger, CCHC domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_27720 chr2 96971242 96971574 + 9.15712 NA promoter-TSS (NM_014014) promoter-TSS (NM_014014) -101 NM_014014 23020 Hs.246112 NM_014014 HPRD:03391 SNRNP200 ASCC3L1|BRR2|HELIC2|RP33|U5-200KD small nuclear ribonucleoprotein 200kDa (U5) protein-coding 13-PTNLD9-TUMOR_peak_21597 chr17 56024278 56024448 + 9.15306 NA intron (NM_001271875, intron 1 of 10) intron (NM_001271875, intron 1 of 10) 8321 NM_001271875 404093 Hs.46679 NM_001271875 HPRD:13098 CUEDC1 - CUE domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_35686 chr3 125366525 125366691 + 9.14902 NA Intergenic Intergenic -52227 NM_022776 114885 Hs.477440 NM_022776 HPRD:09481 OSBPL11 ORP-11|ORP11|OSBP12|TCCCIA00292 oxysterol binding protein-like 11 protein-coding 13-PTNLD9-TUMOR_peak_10185 chr11 64781075 64781279 + 9.14902 NA promoter-TSS (NM_001199745) promoter-TSS (NM_001199745) -408 NM_001667 402 Hs.502836 NM_001667 HPRD:11869 ARL2 ARFL2 ADP-ribosylation factor-like 2 protein-coding 13-PTNLD9-TUMOR_peak_31242 chr20 44992949 44993118 + 9.14604 NA promoter-TSS (NM_015945) promoter-TSS (NM_015945) 64 NM_015945 51006 Hs.593344 NM_015945 HPRD:15371 SLC35C2 BA394O2.1|C20orf5|CGI-15|OVCOV1 solute carrier family 35 (GDP-fucose transporter), member C2 protein-coding 13-PTNLD9-TUMOR_peak_8205 chr10 103911252 103911418 + 9.14604 NA promoter-TSS (NM_001284389) promoter-TSS (NM_001284389) -598 NM_004741 9221 Hs.523238 NM_004741 ENSG00000166197 NOLC1 NOPP130|NOPP140|NS5ATP13|P130 nucleolar and coiled-body phosphoprotein 1 protein-coding 13-PTNLD9-TUMOR_peak_1011 chr1 33227133 33227366 + 9.14152 NA intron (NM_020888, intron 1 of 6) MIRc|SINE|MIR -3986 NM_001198973 57648 Hs.591502 NM_020888 ENSG00000162522 KIAA1522 - KIAA1522 protein-coding 13-PTNLD9-TUMOR_peak_24124 chr19 13278358 13278754 + 9.13536 NA Intergenic Intergenic 17274 NM_004907 9592 Hs.501629 NM_004907 HPRD:09997 IER2 ETR101 immediate early response 2 protein-coding 13-PTNLD9-TUMOR_peak_12405 chr12 28967271 28967425 + 9.13304 NA Intergenic HERVL18-int|LTR|ERVL -334588 NM_001271783 55711 Hs.728955 NM_018099 HPRD:14723 FAR2 MLSTD1|SDR10E2 fatty acyl CoA reductase 2 protein-coding 13-PTNLD9-TUMOR_peak_50256 chr8 21961394 21961695 + 9.13304 NA 3' UTR (NM_022749, exon 17 of 17) 3' UTR (NM_022749, exon 17 of 17) 5388 NM_024815 79873 Hs.527101 NM_024815 NUDT18 MTH3 nudix (nucleoside diphosphate linked moiety X)-type motif 18 protein-coding 13-PTNLD9-TUMOR_peak_19453 chr16 57831842 57832102 + 9.13304 NA promoter-TSS (NM_001130099) promoter-TSS (NM_001130099) -43 NM_001130099 3801 Hs.23131 NM_005550 HPRD:05171 KIFC3 - kinesin family member C3 protein-coding 13-PTNLD9-TUMOR_peak_47399 chr7 45964042 45964160 + 9.13304 NA Intergenic Intergenic -3230 NM_001013398 3486 Hs.450230 NM_000598 HPRD:00899 IGFBP3 BP-53|IBP3 insulin-like growth factor binding protein 3 protein-coding 13-PTNLD9-TUMOR_peak_30263 chr20 1450856 1451145 + 9.13304 NA Intergenic LTR43B|LTR|ERV1 -2663 NR_038164 55968 Hs.12865 NM_016143 HPRD:09425 NSFL1C P47|UBX1|UBXD10|UBXN2C|dJ776F14.1 NSFL1 (p97) cofactor (p47) protein-coding 13-PTNLD9-TUMOR_peak_13595 chr12 102271185 102271485 + 9.13304 NA 5' UTR (NM_018370, exon 1 of 7) 5' UTR (NM_018370, exon 1 of 7) 230 NM_018370 55332 Hs.525634 NM_018370 HPRD:07743 DRAM1 DRAM DNA-damage regulated autophagy modulator 1 protein-coding 13-PTNLD9-TUMOR_peak_48591 chr7 101007110 101007431 + 9.13304 NA intron (NM_133457, intron 1 of 12) CpG 1169 NM_001278563 136227 Hs.654854 NM_133457 HPRD:16405 COL26A1 EMI6|EMID2|EMU2|SH2B collagen, type XXVI, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_42903 chr5 167570629 167570757 + 9.13304 NA intron (NM_001122679, intron 12 of 28) intron (NM_001122679, intron 12 of 28) 88684 NR_109894 101927862 Hs.659376 NR_109894 ENSG00000253978 CTB-178M22.2 - uncharacterized LOC101927862 ncRNA 13-PTNLD9-TUMOR_peak_23853 chr19 8571068 8571246 + 9.13304 NA Intergenic CpG -3619 NM_032152 84106 Hs.465812 NM_032152 HPRD:05926 PRAM1 PML-RAR|PRAM-1 PML-RARA regulated adaptor molecule 1 protein-coding 13-PTNLD9-TUMOR_peak_2607 chr1 98789039 98789222 + 9.13304 NA Intergenic L2a|LINE|L2 112863 NR_046088 729987 Hs.683961 NR_046088 ENSG00000226053 LOC729987 - uncharacterized LOC729987 ncRNA 13-PTNLD9-TUMOR_peak_52453 chr8 144766514 144766715 + 9.13304 NA promoter-TSS (NM_173831) promoter-TSS (NM_173831) -8 NM_001288809 286075 Hs.521922 NM_173831 HPRD:14162 ZNF707 - zinc finger protein 707 protein-coding 13-PTNLD9-TUMOR_peak_56627 chrX 151039206 151039361 + 9.13304 NA Intergenic Intergenic -42078 NM_001011548 4103 Hs.37107 NM_002362 HPRD:02167 MAGEA4 CT1.4|MAGE-41|MAGE-X2|MAGE4|MAGE4A|MAGE4B melanoma antigen family A, 4 protein-coding 13-PTNLD9-TUMOR_peak_16237 chr14 74079173 74079645 + 9.13304 NA Intergenic CpG -4139 NM_001037162 641372 Hs.122038 NM_001037162 ENSG00000205669 ACOT6 C14orf42|c14_5530 acyl-CoA thioesterase 6 protein-coding 13-PTNLD9-TUMOR_peak_43599 chr6 4776054 4776346 + 9.13304 NA promoter-TSS (NM_004824) promoter-TSS (NM_004824) -480 NM_004824 9425 Hs.269092 NM_004824 HPRD:04803 CDYL CDYL1 chromodomain protein, Y-like protein-coding 13-PTNLD9-TUMOR_peak_13259 chr12 69070029 69070380 + 9.13304 NA intron (NR_038930, intron 2 of 2) AluJb|SINE|Alu 10435 NR_038930 100507250 Hs.600731 NR_038930 ENSG00000247363 LOC100507250 - uncharacterized LOC100507250 ncRNA 13-PTNLD9-TUMOR_peak_23138 chr18 46482347 46482519 + 9.12636 NA Intergenic Intergenic -5352 NM_001190821 4092 Hs.465087 NM_005904 HPRD:04241 SMAD7 CRCS3|MADH7|MADH8 SMAD family member 7 protein-coding 13-PTNLD9-TUMOR_peak_11773 chr12 679039 679156 + 9.12636 NA intron (NM_016533, intron 1 of 3) CpG 40482 NM_001294345 4815 Hs.655804 NM_016533 HPRD:09530 NINJ2 - ninjurin 2 protein-coding 13-PTNLD9-TUMOR_peak_14209 chr12 124877489 124877705 + 9.12636 NA intron (NM_001077261, intron 18 of 47) intron (NM_001077261, intron 18 of 47) -55809 NR_106940 102466204 NR_106940 MIR6880 hsa-mir-6880 microRNA 6880 ncRNA 13-PTNLD9-TUMOR_peak_15081 chr13 108870780 108871028 + 9.12528 NA promoter-TSS (NM_001098268) promoter-TSS (NM_001098268) 141 NM_032859 84945 Hs.183528 NM_032859 HPRD:12618 ABHD13 BEM46L1|C13orf6|bA153I24.2 abhydrolase domain containing 13 protein-coding 13-PTNLD9-TUMOR_peak_33523 chr22 51008453 51008569 + 9.12528 NA intron (NR_027928, intron 27 of 29) intron (NR_027928, intron 27 of 29) -7183 NM_001123225 644186 Hs.535660 NM_001123225 ENSG00000217442 SYCE3 C22orf41|THEG2 synaptonemal complex central element protein 3 protein-coding 13-PTNLD9-TUMOR_peak_48781 chr7 107235787 107236103 + 9.12528 NA intron (NM_001008405, intron 3 of 7) intron (NM_001008405, intron 3 of 7) 14741 NM_001008405 55973 Hs.303787 NM_018844 HPRD:16541 BCAP29 BAP29 B-cell receptor-associated protein 29 protein-coding 13-PTNLD9-TUMOR_peak_9637 chr11 44629022 44629187 + 9.12528 NA intron (NM_002231, intron 6 of 9) intron (NM_002231, intron 6 of 9) 41963 NM_001024844 3732 Hs.527778 NM_002231 CD82 4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27 CD82 molecule protein-coding 13-PTNLD9-TUMOR_peak_13321 chr12 71430286 71430597 + 9.12528 NA Intergenic Intergenic -115857 NM_002849 5801 Hs.506076 NM_002849 HPRD:04169 PTPRR EC-PTP|PCPTP1|PTP-SL|PTPBR7|PTPRQ protein tyrosine phosphatase, receptor type, R protein-coding 13-PTNLD9-TUMOR_peak_13933 chr12 116586749 116586937 + 9.12528 NA promoter-TSS (NR_030351) promoter-TSS (NR_030351) -384 NR_030351 693205 NR_030351 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 13-PTNLD9-TUMOR_peak_38676 chr4 79451119 79451319 + 9.12528 NA intron (NM_025074, intron 70 of 73) L1ME3E|LINE|L1 -21523 NM_005139 306 Hs.480042 NM_005139 HPRD:00111 ANXA3 ANX3 annexin A3 protein-coding 13-PTNLD9-TUMOR_peak_31349 chr20 47885260 47885436 + 9.12528 NA intron (NM_021035, intron 3 of 13) L1PA15|LINE|L1 -9367 NR_003606 441951 Hs.356766 NR_003604 ENSG00000177410 ZFAS1 C20orf199|HSUP1|HSUP2|NCRNA00275|ZNFX1-AS1 ZNFX1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_35729 chr3 126227568 126227751 + 9.12528 NA intron (NM_144639, intron 3 of 19) intron (NM_144639, intron 3 of 19) 8957 NM_001165974 131669 Hs.331148 NM_144639 HPRD:08712 UROC1 HMFN0320 urocanate hydratase 1 protein-coding 13-PTNLD9-TUMOR_peak_30344 chr20 4206567 4206765 + 9.12528 NA intron (NM_000678, intron 1 of 1) intron (NM_000678, intron 1 of 1) 22993 NM_000678 146 Hs.557 NM_000678 HPRD:00079 ADRA1D ADRA1|ADRA1A|ADRA1R|ALPHA1|DAR|dJ779E11.2 adrenoceptor alpha 1D protein-coding 13-PTNLD9-TUMOR_peak_54292 chr9 107659917 107660097 + 9.12528 NA intron (NM_005502, intron 2 of 49) AluSz|SINE|Alu 30520 NM_005502 19 Hs.659274 NM_005502 HPRD:02501 ABCA1 ABC-1|ABC1|CERP|HDLDT1|TGD ATP-binding cassette, sub-family A (ABC1), member 1 protein-coding 13-PTNLD9-TUMOR_peak_48348 chr7 94513108 94513317 + 9.12528 NA Intergenic LTR43|LTR|ERV1 -23737 NM_001166160 55607 Hs.21816 NM_017650 ENSG00000158528 PPP1R9A NRB1|NRBI|Neurabin-I protein phosphatase 1, regulatory subunit 9A protein-coding 13-PTNLD9-TUMOR_peak_50616 chr8 37637515 37637652 + 9.12528 NA TTS (NM_007198) TTS (NM_007198) -16818 NM_032777 25960 Hs.274136 NM_032777 HPRD:08437 GPR124 TEM5 G protein-coupled receptor 124 protein-coding 13-PTNLD9-TUMOR_peak_26735 chr2 43685277 43685392 + 9.12528 NA intron (NM_022065, intron 26 of 37) intron (NM_022065, intron 26 of 37) 137779 NM_001083953 63892 Hs.369592 NM_022065 HPRD:18177 THADA GITA thyroid adenoma associated protein-coding 13-PTNLD9-TUMOR_peak_54211 chr9 101817861 101817982 + 9.12528 NA intron (NM_001855, intron 34 of 41) intron (NM_001855, intron 34 of 41) -49491 NM_001130916 7046 Hs.494622 NM_004612 HPRD:01822 TGFBR1 AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TGFR-1 transforming growth factor, beta receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_14571 chr13 34083882 34084086 + 9.12528 NA intron (NM_001243476, intron 4 of 17) intron (NM_001243476, intron 4 of 17) 166988 NM_001243476 90627 Hs.156551 NM_052851 HPRD:11607 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR-related lipid transfer (START) domain containing 13 protein-coding 13-PTNLD9-TUMOR_peak_54511 chr9 116385318 116385523 + 9.11816 NA Intergenic Intergenic 28986 NM_001276262 5998 Hs.494875 NM_017790 HPRD:03720 RGS3 C2PA|RGP3 regulator of G-protein signaling 3 protein-coding 13-PTNLD9-TUMOR_peak_21253 chr17 44344404 44344531 + 9.11816 NA Intergenic CpG 23537 NR_026901 644172 Hs.448859 NR_026901 LOC644172 - mitogen-activated protein kinase 8 interacting protein 1 pseudogene pseudo 13-PTNLD9-TUMOR_peak_10997 chr11 96072083 96072242 + 9.11764 NA intron (NM_032427, intron 1 of 4) intron (NM_032427, intron 1 of 4) -2440 NR_036125 100422991 NR_036125 miRBase:MI0014197 MIR1260B - microRNA 1260b ncRNA 13-PTNLD9-TUMOR_peak_3504 chr1 149759517 149759671 + 9.11712 NA intron (NM_000566, intron 3 of 5) MLT1E1A|LTR|ERVL-MaLR 5344 NM_000566 2209 Hs.77424 NM_000566 HPRD:00904 FCGR1A CD64|CD64A|FCRI|IGFR1 Fc fragment of IgG, high affinity Ia, receptor (CD64) protein-coding 13-PTNLD9-TUMOR_peak_19636 chr16 68670051 68670385 + 9.11646 NA Intergenic Intergenic -7933 NM_001793 1001 Hs.191842 NM_001793 HPRD:00227 CDH3 CDHP|HJMD|PCAD cadherin 3, type 1, P-cadherin (placental) protein-coding 13-PTNLD9-TUMOR_peak_46994 chr7 20336173 20336313 + 9.11646 NA promoter-TSS (NR_110117) promoter-TSS (NR_110117) -88 NR_110117 101927769 Hs.256080 NR_110117 ENSG00000226097 LOC101927769 - uncharacterized LOC101927769 ncRNA 13-PTNLD9-TUMOR_peak_4892 chr1 199824823 199825005 + 9.11646 NA Intergenic L2c|LINE|L2 -171816 NM_003822 2494 Hs.33446 NM_003822 HPRD:06830 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5, group A, member 2 protein-coding 13-PTNLD9-TUMOR_peak_11890 chr12 4964720 4964945 + 9.11646 NA Intergenic Intergenic 46490 NM_002235 3742 Hs.306190 NM_002235 HPRD:08884 KCNA6 HBK2|KV1.6|PPP1R96 potassium voltage-gated channel, shaker-related subfamily, member 6 protein-coding 13-PTNLD9-TUMOR_peak_35006 chr3 75273680 75273852 + 9.11646 NA Intergenic Intergenic 10139 NR_039646 100616394 NR_039646 miRBase:MI0016787 MIR4444-1 MIR4444|hsa-mir-4444-1 microRNA 4444-1 ncRNA 13-PTNLD9-TUMOR_peak_11518 chr11 124790936 124791175 + 9.11646 NA TTS (NM_001037558) TTS (NM_001037558) 1909 NM_001037558 641654 Hs.159863 NM_001037558 ENSG00000221932 HEPN1 - hepatocellular carcinoma, down-regulated 1 protein-coding 13-PTNLD9-TUMOR_peak_9272 chr11 19443825 19444126 + 9.11646 NA intron (NM_001111018, intron 1 of 37) intron (NM_001111018, intron 1 of 37) 71704 NM_001111018 89797 Hs.64341 NM_145117 HPRD:07385 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 13-PTNLD9-TUMOR_peak_15769 chr14 52837103 52837380 + 9.11646 NA Intergenic Intergenic 56225 NM_000956 5732 Hs.2090 NM_000956 HPRD:08905 PTGER2 EP2 prostaglandin E receptor 2 (subtype EP2), 53kDa protein-coding 13-PTNLD9-TUMOR_peak_19011 chr16 30547118 30547234 + 9.11646 NA promoter-TSS (NM_023931) promoter-TSS (NM_023931) -982 NM_023931 65988 Hs.592032 NM_023931 ZNF747 - zinc finger protein 747 protein-coding 13-PTNLD9-TUMOR_peak_49092 chr7 130645956 130646379 + 9.11581 NA intron (NR_109852, intron 4 of 5) intron (NR_109852, intron 4 of 5) 47944 NR_109780 100506860 Hs.635013 NR_109780 LOC100506860 - uncharacterized LOC100506860 ncRNA 13-PTNLD9-TUMOR_peak_36505 chr3 156784586 156784808 + 9.09986 NA Intergenic Intergenic -22973 NR_034008 100498859 Hs.633655 NR_034008 ENSG00000241135 LINC00881 - long intergenic non-protein coding RNA 881 ncRNA 13-PTNLD9-TUMOR_peak_20766 chr17 27136000 27136152 + 9.09986 NA intron (NM_001288637, intron 1 of 4) intron (NM_001288637, intron 1 of 4) 3377 NM_001288634 55731 Hs.564533 NM_018182 HPRD:07693 FAM222B C17orf63 family with sequence similarity 222, member B protein-coding 13-PTNLD9-TUMOR_peak_13512 chr12 95598266 95598484 + 9.09697 NA intron (NM_018351, intron 2 of 20) intron (NM_018351, intron 2 of 20) 12865 NM_018351 55785 Hs.506381 NM_018351 HPRD:16892 FGD6 ZFYVE24 FYVE, RhoGEF and PH domain containing 6 protein-coding 13-PTNLD9-TUMOR_peak_29069 chr2 172339537 172339656 + 9.09697 NA non-coding (NR_028482, exon 13 of 13) non-coding (NR_028482, exon 13 of 13) -39161 NM_001256909 79901 Hs.221941 NM_024843 HPRD:05764 CYBRD1 CYB561A2|DCYTB|FRRS3 cytochrome b reductase 1 protein-coding 13-PTNLD9-TUMOR_peak_23166 chr18 47669156 47669479 + 9.09697 NA intron (NM_001080467, intron 1 of 39) intron (NM_001080467, intron 1 of 39) -16384 NR_036204 100422865 NR_036204 MIR4320 - microRNA 4320 ncRNA 13-PTNLD9-TUMOR_peak_20574 chr17 17894429 17894579 + 9.09697 NA intron (NM_001130091, intron 6 of 13) intron (NM_001130091, intron 6 of 13) 18377 NM_001130092 83450 Hs.579264 NM_031294 HPRD:13181 LRRC48 - leucine rich repeat containing 48 protein-coding 13-PTNLD9-TUMOR_peak_12150 chr12 12151713 12151853 + 9.09697 NA Intergenic MER41B|LTR|ERV1 -72095 NM_138723 79370 Hs.210343 NM_030766 HPRD:05841 BCL2L14 BCLG BCL2-like 14 (apoptosis facilitator) protein-coding 13-PTNLD9-TUMOR_peak_5837 chr1 232521025 232521203 + 9.09697 NA Intergenic Intergenic 130129 NM_020808 57568 Hs.745009 NM_020808 HPRD:15346 SIPA1L2 SPAL2 signal-induced proliferation-associated 1 like 2 protein-coding 13-PTNLD9-TUMOR_peak_39444 chr4 140810509 140810636 + 9.09697 NA exon (NM_018717, exon 3 of 6) exon (NM_018717, exon 3 of 6) 223650 NM_002413 4258 Hs.81874 NM_002413 HPRD:03436 MGST2 GST2|MGST-II microsomal glutathione S-transferase 2 protein-coding 13-PTNLD9-TUMOR_peak_9106 chr11 12701934 12702104 + 9.09697 NA intron (NM_021961, intron 2 of 12) intron (NM_021961, intron 2 of 12) 6050 NM_021961 7003 Hs.655331 NM_021961 HPRD:01802 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain family member 1 (SV40 transcriptional enhancer factor) protein-coding 13-PTNLD9-TUMOR_peak_43860 chr6 13535638 13535737 + 9.09697 NA Intergenic MER5B|DNA|hAT-Charlie -39074 NM_001193267 23408 Hs.567431 NM_012241 HPRD:06838 SIRT5 SIR2L5 sirtuin 5 protein-coding 13-PTNLD9-TUMOR_peak_20903 chr17 34819845 34820042 + 9.09697 NA Intergenic CpG -11851 NM_001001417 414059 Hs.105891 NM_001001417 HPRD:11264 TBC1D3B PRC17|TBC1D3I TBC1 domain family, member 3B protein-coding 13-PTNLD9-TUMOR_peak_22059 chr17 74368488 74368742 + 9.09697 NA Intergenic L1MB5|LINE|L1 -12075 NM_021972 8877 Hs.68061 NM_021972 HPRD:04768 SPHK1 SPHK sphingosine kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_10892 chr11 91215107 91215206 + 9.09697 NA Intergenic LTR2B|LTR|ERV1 -870106 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10 FAT atypical cadherin 3 protein-coding 13-PTNLD9-TUMOR_peak_6529 chr10 13728377 13728628 + 9.09697 NA intron (NM_018027, intron 15 of 24) intron (NM_018027, intron 15 of 24) 99563 NM_003675 8559 Hs.729158 NM_003675 HPRD:05407 PRPF18 PRP18|hPrp18 pre-mRNA processing factor 18 protein-coding 13-PTNLD9-TUMOR_peak_22099 chr17 75106135 75106362 + 9.09697 NA intron (NM_001204410, intron 2 of 17) intron (NM_001204410, intron 2 of 17) 20749 NR_106997 102466864 NR_106997 MIR6516 hsa-mir-6516 microRNA 6516 ncRNA 13-PTNLD9-TUMOR_peak_52751 chr9 13181786 13181953 + 9.09697 NA intron (NM_001261407, intron 19 of 44) intron (NM_001261407, intron 19 of 44) 97694 NM_001261406 8777 Hs.169378 NM_003829 HPRD:09155 MPDZ HYC2|MUPP1 multiple PDZ domain protein protein-coding 13-PTNLD9-TUMOR_peak_31011 chr20 37599028 37599152 + 9.09697 NA intron (NM_001190809, intron 2 of 20) intron (NM_001190809, intron 2 of 20) 8109 NM_021931 60625 Hs.444520 NM_021931 HPRD:13145 DHX35 C20orf15|DDX35|KAIA0875 DEAH (Asp-Glu-Ala-His) box polypeptide 35 protein-coding 13-PTNLD9-TUMOR_peak_727 chr1 25174592 25174726 + 9.09697 NA Intergenic CpG 71248 NR_106789 102465437 NR_106789 MIR6731 hsa-mir-6731 microRNA 6731 ncRNA 13-PTNLD9-TUMOR_peak_15749 chr14 52006294 52006393 + 9.09697 NA intron (NM_001042481, intron 1 of 14) intron (NM_001042481, intron 1 of 14) 50504 NM_001042481 122786 Hs.434914 NM_152330 HPRD:12646 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 13-PTNLD9-TUMOR_peak_28849 chr2 159783193 159783424 + 9.09697 NA Intergenic AluSq|SINE|Alu -41838 NM_001145909 85461 Hs.61590 NM_033394 HPRD:18146 TANC1 ROLSB|TANC tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 protein-coding 13-PTNLD9-TUMOR_peak_23154 chr18 47217582 47217756 + 9.09697 NA Intergenic Intergenic 122582 NM_006111 10449 Hs.200136 NM_006111 HPRD:10380 ACAA2 DSAEC acetyl-CoA acyltransferase 2 protein-coding 13-PTNLD9-TUMOR_peak_33532 chr3 285112 285253 + 9.09697 NA intron (NR_045572, intron 1 of 2) intron (NR_045572, intron 1 of 2) 45856 NR_045572 10752 Hs.148909 NM_006614 HPRD:07598 CHL1 CALL|L1CAM2 cell adhesion molecule L1-like protein-coding 13-PTNLD9-TUMOR_peak_18612 chr16 15588259 15588375 + 9.09697 NA intron (NM_033201, intron 1 of 5) intron (NM_033201, intron 1 of 5) -7806 NM_001142469 89927 Hs.401798 NM_033201 HPRD:12382 C16orf45 - chromosome 16 open reading frame 45 protein-coding 13-PTNLD9-TUMOR_peak_12197 chr12 13278045 13278262 + 9.09697 NA Intergenic Intergenic -21523 NM_001206842 83445 Hs.240053 NM_031289 HPRD:11015 GSG1 - germ cell associated 1 protein-coding 13-PTNLD9-TUMOR_peak_9730 chr11 47475910 47476059 + 9.09697 NA Intergenic MIR|SINE|MIR -5254 NM_005055 5913 Hs.81218 NM_005055 HPRD:03353 RAPSN RAPSYN|RNF205 receptor-associated protein of the synapse protein-coding 13-PTNLD9-TUMOR_peak_54935 chr9 133788727 133788985 + 9.09697 NA intron (NM_001145106, intron 5 of 7) intron (NM_001145106, intron 5 of 7) -19631 NM_198180 347148 Hs.660704 NM_198180 HPRD:17813 QRFP 26RFa|P518 pyroglutamylated RFamide peptide protein-coding 13-PTNLD9-TUMOR_peak_21544 chr17 53861450 53861660 + 9.09697 NA Intergenic Intergenic 33089 NM_001102402 58488 Hs.285218 NM_021213 HPRD:06927 PCTP PC-TP|STARD2 phosphatidylcholine transfer protein protein-coding 13-PTNLD9-TUMOR_peak_1170 chr1 37762275 37762393 + 9.09697 NA Intergenic Intergenic 135170 NR_036217 100422898 NR_036217 miRBase:MI0015863 MIR4255 - microRNA 4255 ncRNA 13-PTNLD9-TUMOR_peak_24749 chr19 35659211 35659392 + 9.09697 NA intron (NR_028406, intron 7 of 7) L2b|LINE|L2 13456 NM_001164605 53827 Hs.333418 NM_014164 HPRD:09448 FXYD5 DYSAD|IWU1|KCT1|OIT2|PRO6241|RIC FXYD domain containing ion transport regulator 5 protein-coding 13-PTNLD9-TUMOR_peak_43437 chr6 1735574 1735753 + 9.09697 NA intron (NM_001500, intron 8 of 10) L2b|LINE|L2 124982 NM_001453 2296 Hs.348883 NM_001453 HPRD:03054 FOXC1 ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3 forkhead box C1 protein-coding 13-PTNLD9-TUMOR_peak_18069 chr15 99663925 99664390 + 9.09697 NA intron (NM_015286, intron 2 of 4) intron (NM_015286, intron 2 of 4) 18871 NM_145728 23336 Hs.207106 NM_015286 HPRD:07305 SYNM DMN|SYN synemin, intermediate filament protein protein-coding 13-PTNLD9-TUMOR_peak_354 chr1 9927670 9927774 + 9.09697 NA intron (NM_001012329, intron 4 of 4) intron (NM_001012329, intron 4 of 4) 42594 NM_020248 56998 Hs.463759 NM_020248 HPRD:09677 CTNNBIP1 ICAT catenin, beta interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_24609 chr19 29314263 29314539 + 9.09697 NA Intergenic Intergenic -95800 NR_110759 100420587 Hs.569956 NR_110759 LOC100420587 - SHC SH2-domain binding protein 1 pseudogene pseudo 13-PTNLD9-TUMOR_peak_641 chr1 22459141 22459255 + 9.09697 NA intron (NM_030761, intron 1 of 4) intron (NM_030761, intron 1 of 4) 10321 NM_030761 54361 Hs.25766 NM_030761 HPRD:04601 WNT4 SERKAL|WNT-4 wingless-type MMTV integration site family, member 4 protein-coding 13-PTNLD9-TUMOR_peak_47474 chr7 50485876 50485992 + 9.09697 NA Intergenic Intergenic 32154 NM_001287496 63979 Hs.137516 NM_022116 HPRD:10958 FIGNL1 - fidgetin-like 1 protein-coding 13-PTNLD9-TUMOR_peak_29276 chr2 183452653 183452921 + 9.09697 NA Intergenic Intergenic -65215 NM_001258312 5136 Hs.191046 NM_005019 HPRD:01387 PDE1A CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A, calmodulin-dependent protein-coding 13-PTNLD9-TUMOR_peak_13689 chr12 106472552 106472699 + 9.09697 NA intron (NM_014840, intron 4 of 6) intron (NM_014840, intron 4 of 6) 61186 NM_014840 9891 Hs.524692 NM_014840 HPRD:12171 NUAK1 ARK5 NUAK family, SNF1-like kinase, 1 protein-coding 13-PTNLD9-TUMOR_peak_724 chr1 25159962 25160113 + 9.09697 NA intron (NM_013943, intron 4 of 5) SVA_E|Other|Other 85870 NR_106789 102465437 NR_106789 MIR6731 hsa-mir-6731 microRNA 6731 ncRNA 13-PTNLD9-TUMOR_peak_50353 chr8 23516633 23516747 + 9.09697 NA Intergenic L3|LINE|CR1 23712 NM_001256339 4824 Hs.55999 NM_006167 HPRD:03620 NKX3-1 BAPX2|NKX3|NKX3.1|NKX3A NK3 homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_20120 chr16 89355983 89356086 + 9.09697 NA intron (NM_001256182, intron 7 of 13) intron (NM_001256182, intron 7 of 13) -31507 NM_001242885 100287036 Hs.656995 NM_001242885 LOC100287036 - uncharacterized LOC100287036 protein-coding 13-PTNLD9-TUMOR_peak_17549 chr15 70087228 70087496 + 9.09697 NA Intergenic Intergenic -40211 NR_026764 414926 Hs.569502 NR_026764 ENSG00000259703 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 13-PTNLD9-TUMOR_peak_10744 chr11 78597621 78597775 + 9.09697 NA intron (NM_001098816, intron 9 of 33) MIRb|SINE|MIR -311789 NM_024678 79731 Hs.503389 NM_024678 HPRD:08026 NARS2 SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial (putative) protein-coding 13-PTNLD9-TUMOR_peak_21853 chr17 65974826 65974972 + 9.09697 NA intron (NM_182641, intron 27 of 27) intron (NM_182641, intron 27 of 27) 14866 NM_181655 284018 Hs.90790 NM_181655 HPRD:14151 C17orf58 - chromosome 17 open reading frame 58 protein-coding 13-PTNLD9-TUMOR_peak_20515 chr17 15313100 15313296 + 9.09697 NA Intergenic Intergenic 57727 NM_001204477 284040 Hs.164595 NM_173622 HPRD:08208 CDRT4 - CMT1A duplicated region transcript 4 protein-coding 13-PTNLD9-TUMOR_peak_35615 chr3 123788722 123788833 + 9.09697 NA Intergenic Intergenic -24781 NR_028136 8997 Hs.8004 NM_003947 HPRD:06859 KALRN ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD kalirin, RhoGEF kinase protein-coding 13-PTNLD9-TUMOR_peak_41231 chr5 71907116 71907242 + 9.09697 NA intron (NR_105007, intron 1 of 2) intron (NR_105007, intron 1 of 2) 49317 NR_105007 102477328 Hs.254516 NR_105007 LOC102477328 - uncharacterized LOC102477328 ncRNA 13-PTNLD9-TUMOR_peak_30515 chr20 17868753 17868940 + 9.09697 NA Intergenic MLT1F|LTR|ERVL-MaLR 74743 NR_003045 692086 Hs.680747 NR_003045 SNORD17 HBI-43 small nucleolar RNA, C/D box 17 snoRNA 13-PTNLD9-TUMOR_peak_18916 chr16 29202047 29202291 + 9.09697 NA Intergenic Intergenic -111439 NR_002939 440352 Hs.658149 NR_002939 SNX29P2 RUNDC2C sorting nexin 29 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_26941 chr2 54638777 54638912 + 9.09697 NA Intergenic Intergenic -44610 NM_003128 6711 Hs.503178 NM_003128 HPRD:01683 SPTBN1 ELF|HEL102|SPTB2|betaSpII spectrin, beta, non-erythrocytic 1 protein-coding 13-PTNLD9-TUMOR_peak_23833 chr19 8239670 8239795 + 9.09697 NA Intergenic Intergenic -27347 NM_032447 84467 Hs.370362 NM_032447 HPRD:10538 FBN3 - fibrillin 3 protein-coding 13-PTNLD9-TUMOR_peak_7839 chr10 80280998 80281158 + 9.09697 NA Intergenic Intergenic 253993 NR_073447 414243 Hs.55047 NR_073447 ENSG00000227136 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 13-PTNLD9-TUMOR_peak_21807 chr17 63510780 63510932 + 9.09697 NA Intergenic Intergenic 46884 NM_004655 8313 Hs.156527 NM_004655 HPRD:04935 AXIN2 AXIL|ODCRCS axin 2 protein-coding 13-PTNLD9-TUMOR_peak_16357 chr14 79033033 79033149 + 9.09697 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 163017 NM_004796 9369 Hs.368307 NM_004796 NRXN3 C14orf60 neurexin 3 protein-coding 13-PTNLD9-TUMOR_peak_16156 chr14 69693019 69693288 + 9.09697 NA intron (NR_034164, intron 4 of 10) intron (NR_034164, intron 4 of 10) -33528 NM_020692 57452 Hs.21035 NM_020692 HPRD:13562 GALNT16 GALNACT16|GALNTL1|GalNAc-T16 polypeptide N-acetylgalactosaminyltransferase 16 protein-coding 13-PTNLD9-TUMOR_peak_16407 chr14 89680552 89680775 + 9.09697 NA intron (NM_001085471, intron 4 of 6) intron (NM_001085471, intron 4 of 6) 202791 NM_005197 1112 Hs.434286 NM_005197 HPRD:07533 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 13-PTNLD9-TUMOR_peak_34921 chr3 69740256 69740583 + 9.09697 NA Intergenic Intergenic -48167 NM_198159 4286 Hs.166017 NM_000248 HPRD:01138 MITF CMM8|MI|WS2|WS2A|bHLHe32 microphthalmia-associated transcription factor protein-coding 13-PTNLD9-TUMOR_peak_23668 chr19 2579396 2579649 + 9.09697 NA intron (NM_052847, intron 2 of 4) CpG 103399 NM_015675 4616 Hs.110571 NM_015675 HPRD:05382 GADD45B GADD45BETA|MYD118 growth arrest and DNA-damage-inducible, beta protein-coding 13-PTNLD9-TUMOR_peak_13557 chr12 98818598 98818793 + 9.09697 NA Intergenic Intergenic 32228 NR_033801 121456 Hs.620643 NR_033801 ENSG00000227825 SLC9A7P1 - solute carrier family 9, subfamily A (NHE7, cation proton antiporter 7), member 7 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_29883 chr2 220796644 220796757 + 9.09697 NA Intergenic L1PA2|LINE|L1 -25414 NR_036228 100422959 NR_036228 miRBase:MI0015874 MIR4268 - microRNA 4268 ncRNA 13-PTNLD9-TUMOR_peak_19831 chr16 79218426 79218564 + 9.09697 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 416127 NM_005360 4094 Hs.134859 NM_005360 HPRD:01518 MAF CCA4|c-MAF v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog protein-coding 13-PTNLD9-TUMOR_peak_22532 chr18 8859271 8859468 + 9.09697 NA Intergenic Tigger3c|DNA|TcMar-Tigger 142000 NM_015210 23255 Hs.707920 NM_015210 HPRD:11110 MTCL1 CCDC165|KIAA0802|SOGA2 microtubule crosslinking factor 1 protein-coding 13-PTNLD9-TUMOR_peak_3704 chr1 153250455 153250592 + 9.09697 NA Intergenic Intergenic 18344 NM_000427 4014 Hs.251680 NM_000427 HPRD:01070 LOR - loricrin protein-coding 13-PTNLD9-TUMOR_peak_8132 chr10 99649427 99649632 + 9.09697 NA intron (NM_018058, intron 11 of 14) intron (NM_018058, intron 11 of 14) 39534 NM_001010917 401647 Hs.567524 NM_001010917 HPRD:16579 GOLGA7B C10orf132|C10orf133|bA451M19.3|bA459F3.4 golgin A7 family, member B protein-coding 13-PTNLD9-TUMOR_peak_42303 chr5 139511658 139511793 + 9.09697 NA Intergenic Intergenic 6204 NM_001007189 492311 Hs.696360 NM_001007189 HPRD:17411 IGIP C5orf53 IgA-inducing protein protein-coding 13-PTNLD9-TUMOR_peak_34717 chr3 56348960 56349135 + 9.09697 NA intron (NM_015576, intron 2 of 16) intron (NM_015576, intron 2 of 16) 153344 NM_015576 26059 Hs.476389 NM_015576 HPRD:10810 ERC2 CAST|CAST1|ELKSL|SPBC110|Spc110 ELKS/RAB6-interacting/CAST family member 2 protein-coding 13-PTNLD9-TUMOR_peak_46065 chr6 132384947 132385057 + 9.09697 NA Intergenic Intergenic -70116 NR_038981 100507254 Hs.103070 NR_038981 LINC01013 - long intergenic non-protein coding RNA 1013 ncRNA 13-PTNLD9-TUMOR_peak_54134 chr9 99824670 99825023 + 9.09697 NA Intergenic Intergenic 19381 NR_002942 340508 Hs.680438 NR_002942 ENSG00000228376 GAS2L1P2 - growth arrest-specific 2 like 1 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_13711 chr12 107407997 107408108 + 9.09697 NA intron (NM_004075, intron 2 of 12) intron (NM_004075, intron 2 of 12) -27108 NM_001033050 80298 Hs.5009 NM_025198 HPRD:17431 MTERF2 MTERFD3|mTERFL mitochondrial transcription termination factor 2 protein-coding 13-PTNLD9-TUMOR_peak_52931 chr9 23826382 23826524 + 9.09697 NA promoter-TSS (NM_004432) promoter-TSS (NM_004432) -390 NM_004432 1993 Hs.166109 NM_004432 HPRD:03396 ELAVL2 HEL-N1|HELN1|HUB ELAV like neuron-specific RNA binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_41342 chr5 76103270 76103394 + 9.09697 NA Intergenic Intergenic -11501 NM_005242 2150 Hs.744181 NM_005242 HPRD:02960 F2RL1 GPR11|PAR2 coagulation factor II (thrombin) receptor-like 1 protein-coding 13-PTNLD9-TUMOR_peak_41124 chr5 67760341 67760491 + 9.09697 NA Intergenic Intergenic 172020 NM_001242466 5295 Hs.132225 NM_181504 HPRD:01381 PIK3R1 AGM7|GRB1|p85|p85-ALPHA phosphoinositide-3-kinase, regulatory subunit 1 (alpha) protein-coding 13-PTNLD9-TUMOR_peak_12108 chr12 10253909 10254011 + 9.09697 NA Intergenic L1PB3|LINE|L1 -2296 NM_001297750 51267 Hs.29549 NM_016511 HPRD:09489 CLEC1A CLEC-1|CLEC1 C-type lectin domain family 1, member A protein-coding 13-PTNLD9-TUMOR_peak_10004 chr11 61334807 61335135 + 9.09697 NA intron (NM_001300773, intron 1 of 9) intron (NM_001300773, intron 1 of 9) 13373 NM_004200 9066 Hs.131188 NM_004200 SYT7 IPCA-7|IPCA7|PCANAP7|SYT-VII|SYTVII synaptotagmin VII protein-coding 13-PTNLD9-TUMOR_peak_45371 chr6 55965898 55966108 + 9.09697 NA intron (NM_030820, intron 17 of 29) intron (NM_030820, intron 17 of 29) 146375 NM_030820 81578 Hs.47629 NM_030820 HPRD:09884 COL21A1 COLA1L|dJ682J15.1|dJ708F5.1 collagen, type XXI, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_20664 chr17 20811819 20812055 + 9.09697 NA Intergenic CpG -12484 NM_001004306 339184 Hs.674830 NM_001004306 HPRD:17572 CCDC144NL - coiled-coil domain containing 144 family, N-terminal like protein-coding 13-PTNLD9-TUMOR_peak_21489 chr17 48945107 48945233 + 9.09697 NA non-coding (NR_038458, exon 2 of 2) non-coding (NR_038458, exon 2 of 2) 169 NM_001243877 10140 Hs.703321 NM_005749 HPRD:09273 TOB1 APRO6|PIG49|TOB|TROB|TROB1 transducer of ERBB2, 1 protein-coding 13-PTNLD9-TUMOR_peak_40855 chr5 53625869 53626118 + 9.09697 NA Intergenic ERVL-E-int|LTR|ERVL -19590 NM_019087 54622 Hs.659125 NM_019087 HPRD:12471 ARL15 ARFRP2 ADP-ribosylation factor-like 15 protein-coding 13-PTNLD9-TUMOR_peak_30034 chr2 233755906 233756060 + 9.09697 NA intron (NM_019850, intron 8 of 14) intron (NM_019850, intron 8 of 14) 20989 NM_206895 389084 Hs.657509 NM_206895 HPRD:15620 C2orf82 UNQ830 chromosome 2 open reading frame 82 protein-coding 13-PTNLD9-TUMOR_peak_13653 chr12 104808451 104808607 + 9.09697 NA Intergenic MLT1A0|LTR|ERVL-MaLR -42163 NM_001173982 50515 Hs.17569 NM_018413 HPRD:13055 CHST11 C4ST|C4ST-1|C4ST1|HSA269537 carbohydrate (chondroitin 4) sulfotransferase 11 protein-coding 13-PTNLD9-TUMOR_peak_4667 chr1 182525591 182525698 + 9.09697 NA intron (NM_001137669, intron 21 of 21) MIRc|SINE|MIR 32750 NM_021133 6041 Hs.518545 NM_021133 HPRD:01590 RNASEL PRCA1|RNS4 ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent) protein-coding 13-PTNLD9-TUMOR_peak_52130 chr8 133227899 133228012 + 9.09697 NA intron (NM_004519, intron 1 of 14) LTR16A2|LTR|ERVL -110443 NM_001145095 10086 Hs.285026 NM_005712 HPRD:06823 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 13-PTNLD9-TUMOR_peak_39626 chr4 152117028 152117267 + 9.09697 NA intron (NM_001009555, intron 2 of 20) intron (NM_001009555, intron 2 of 20) -20443 NM_001128924 152503 Hs.744983 NM_001009555 HPRD:16364 SH3D19 EBP|EVE1|Kryn|SH3P19 SH3 domain containing 19 protein-coding 13-PTNLD9-TUMOR_peak_45983 chr6 121819799 121820086 + 9.09697 NA Intergenic AluSx1|SINE|Alu 63219 NM_000165 2697 Hs.74471 NM_000165 HPRD:00414 GJA1 AVSD3|CMDR|CX43|GJAL|HLHS1|HSS|ODDD gap junction protein, alpha 1, 43kDa protein-coding 13-PTNLD9-TUMOR_peak_54688 chr9 124755040 124755135 + 9.09697 NA intron (NM_001139442, intron 3 of 8) intron (NM_001139442, intron 3 of 8) 100798 NM_001139442 158135 Hs.438937 NM_194252 HPRD:10047 TTLL11 C9orf20|bA244O19.1 tubulin tyrosine ligase-like family, member 11 protein-coding 13-PTNLD9-TUMOR_peak_35957 chr3 132502144 132502274 + 9.09697 NA intron (NR_002811, intron 3 of 10) intron (NR_002811, intron 3 of 10) -60906 NR_037804 100532724 Hs.511991 NR_037804 NPHP3-ACAD11 - NPHP3-ACAD11 readthrough (NMD candidate) ncRNA 13-PTNLD9-TUMOR_peak_39587 chr4 148788112 148788219 + 9.09697 NA intron (NM_024605, intron 7 of 22) intron (NM_024605, intron 7 of 22) 84419 NR_039962 100616246 NR_039962 MIR4799 - microRNA 4799 ncRNA 13-PTNLD9-TUMOR_peak_10740 chr11 78278279 78278550 + 9.09697 NA intron (NM_001243251, intron 3 of 13) MER44D|DNA|TcMar-Tigger 7495 NM_001243251 79731 Hs.503389 NM_024678 HPRD:08026 NARS2 SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial (putative) protein-coding 13-PTNLD9-TUMOR_peak_9862 chr11 56840168 56840339 + 9.09697 NA Intergenic Intergenic 35244 NR_036445 219525 Hs.554519 NR_036445 OR5AK4P PJCG3 olfactory receptor, family 5, subfamily AK, member 4 pseudogene pseudo 13-PTNLD9-TUMOR_peak_41915 chr5 124895095 124895266 + 9.09697 NA intron (NR_109887, intron 3 of 3) intron (NR_109887, intron 3 of 3) 66226 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LOC101927460 - uncharacterized LOC101927460 ncRNA 13-PTNLD9-TUMOR_peak_54639 chr9 123546037 123546309 + 9.09697 NA intron (NM_012164, intron 3 of 7) intron (NM_012164, intron 3 of 7) 9567 NM_012164 26190 Hs.494985 NM_012164 HPRD:09950 FBXW2 FBW2|Fwd2|Md6 F-box and WD repeat domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_7810 chr10 79033885 79034061 + 9.09697 NA intron (NM_001271518, intron 1 of 27) intron (NM_001271518, intron 1 of 27) 133384 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_46227 chr6 147235096 147235392 + 9.09697 NA intron (NR_034115, intron 7 of 10) intron (NR_034115, intron 7 of 10) -110284 NR_003954 729176 Hs.486708 NR_003954 KATNBL1P6 - katanin p80 subunit B-like 1 pseudogene 6 pseudo 13-PTNLD9-TUMOR_peak_31359 chr20 47988791 47988995 + 9.09697 NA 3' UTR (NM_004975, exon 2 of 2) 3' UTR (NM_004975, exon 2 of 2) 91673 NR_003030 692057 NR_003030 ENSG00000212304 SNORD12 HBII-99|MIR1259|MIRN1259 small nucleolar RNA, C/D box 12 snoRNA 13-PTNLD9-TUMOR_peak_11089 chr11 104827339 104827518 + 9.09697 NA promoter-TSS (NM_033306) promoter-TSS (NM_033306) -6 NM_033306 837 Hs.138378 NM_001225 HPRD:04047 CASP4 ICE(rel)II|ICEREL-II|ICH-2|Mih1/TX|TX caspase 4, apoptosis-related cysteine peptidase protein-coding 13-PTNLD9-TUMOR_peak_52616 chr9 1458676 1458857 + 9.09697 NA Intergenic Intergenic 408146 NM_181872 10655 Hs.59506 NM_006557 HPRD:16079 DMRT2 - doublesex and mab-3 related transcription factor 2 protein-coding 13-PTNLD9-TUMOR_peak_19470 chr16 58144681 58144840 + 9.09697 NA Intergenic Intergenic 18536 NM_013242 29105 Hs.532755 NM_013242 HPRD:13616 CFAP20 C16orf80|EVORF|GTL3|fSAP23 cilia and flagella associated protein 20 protein-coding 13-PTNLD9-TUMOR_peak_39370 chr4 135458955 135459205 + 9.09697 NA Intergenic MLT1C|LTR|ERVL-MaLR -336177 NM_001114734 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein, cytoplasmic 4-like protein-coding 13-PTNLD9-TUMOR_peak_16513 chr14 96633880 96634015 + 9.09697 NA Intergenic Intergenic -37188 NM_000623 624 Hs.654542 NM_000623 HPRD:00213 BDKRB2 B2R|BK-2|BK2|BKR2|BRB2 bradykinin receptor B2 protein-coding 13-PTNLD9-TUMOR_peak_16421 chr14 90578599 90578753 + 9.09697 NA intron (NM_022054, intron 1 of 1) intron (NM_022054, intron 1 of 1) 50567 NM_022054 56659 Hs.510191 NM_022054 HPRD:09563 KCNK13 K2p13.1|THIK-1|THIK1 potassium channel, subfamily K, member 13 protein-coding 13-PTNLD9-TUMOR_peak_7751 chr10 75408904 75409046 + 9.09697 NA intron (NM_001114133, intron 3 of 3) intron (NM_001114133, intron 3 of 3) 1822 NM_024875 79933 Hs.645273 NM_024875 HPRD:15457 SYNPO2L - synaptopodin 2-like protein-coding 13-PTNLD9-TUMOR_peak_34376 chr3 44106896 44107067 + 9.09697 NA Intergenic Intergenic -48723 NR_029700 406929 NR_029700 miRBase:MI0000476 MIR138-1 MIRN138-1 microRNA 138-1 ncRNA 13-PTNLD9-TUMOR_peak_5751 chr1 229142319 229142481 + 9.09697 NA Intergenic Intergenic -264409 NM_001271998 5867 Hs.296169 NM_004578 HPRD:01541 RAB4A HRES-1|HRES-1/RAB4|HRES1|RAB4 RAB4A, member RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_39617 chr4 151770262 151770467 + 9.09697 NA intron (NM_006726, intron 25 of 57) intron (NM_006726, intron 25 of 57) 166055 NM_001199282 987 Hs.480938 NM_006726 HPRD:07344 LRBA BGL|CDC4L|CVID8|LAB300|LBA LPS-responsive vesicle trafficking, beach and anchor containing protein-coding 13-PTNLD9-TUMOR_peak_38141 chr4 26585558 26585699 + 9.09697 NA promoter-TSS (NM_001292054) promoter-TSS (NM_001292054) 82 NM_018317 55296 Hs.479403 NM_018317 HPRD:07730 TBC1D19 - TBC1 domain family, member 19 protein-coding 13-PTNLD9-TUMOR_peak_18248 chr16 2420856 2420962 + 9.09697 NA intron (NR_003574, intron 5 of 16) intron (NR_003574, intron 5 of 16) 29986 NR_003574 650655 Hs.376281 NR_003574 ENSG00000238098 ABCA17P ABCA17 ATP-binding cassette, sub-family A (ABC1), member 17, pseudogene pseudo 13-PTNLD9-TUMOR_peak_11579 chr11 127638463 127638617 + 9.09697 NA Intergenic Intergenic 497575 NR_120580 101929497 Hs.737442 NR_120580 ENSG00000273409 LOC101929497 - uncharacterized LOC101929497 ncRNA 13-PTNLD9-TUMOR_peak_18559 chr16 14003798 14004067 + 9.09697 NA Intergenic Intergenic -10082 NM_005236 2072 Hs.567265 NM_005236 HPRD:00594 ERCC4 ERCC11|FANCQ|RAD1|XPF excision repair cross-complementation group 4 protein-coding 13-PTNLD9-TUMOR_peak_35881 chr3 129756127 129756541 + 9.09697 NA Intergenic Intergenic -44340 NM_001136152 644974 Hs.722197 NM_001136152 ENSG00000251287 ALG1L2 - ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase-like 2 protein-coding 13-PTNLD9-TUMOR_peak_39254 chr4 123621431 123621554 + 9.09697 NA Intergenic MER70A|LTR|ERVL 32121 NR_024041 729338 Hs.647968 NR_024041 CETN4P - centrin EF-hand protein 4, pseudogene pseudo 13-PTNLD9-TUMOR_peak_20607 chr17 18992116 18992404 + 9.09697 NA Intergenic CpG -4266 NM_001291905 388436 Hs.677375 NM_001291905 LOC388436 - uncharacterized protein ENSP00000382042 protein-coding 13-PTNLD9-TUMOR_peak_8394 chr10 116636879 116637039 + 9.09697 NA intron (NM_001135051, intron 16 of 16) intron (NM_001135051, intron 16 of 16) 55456 NM_020940 57700 Hs.192619 NM_020940 HPRD:17219 FAM160B1 KIAA1600|bA106M7.3 family with sequence similarity 160, member B1 protein-coding 13-PTNLD9-TUMOR_peak_42251 chr5 138289138 138289303 + 9.09697 NA intron (NM_022464, intron 7 of 9) intron (NM_022464, intron 7 of 9) -78163 NM_015564 26045 Hs.656653 NM_015564 HPRD:17454 LRRTM2 - leucine rich repeat transmembrane neuronal 2 protein-coding 13-PTNLD9-TUMOR_peak_56349 chrX 110003048 110003389 + 9.09697 NA intron (NM_001143981, intron 3 of 11) intron (NM_001143981, intron 3 of 11) 35858 NM_145234 91851 Hs.496587 NM_145234 HPRD:02285 CHRDL1 CHL|MGC1|MGCN|NRLN1|VOPT|dA141H5.1 chordin-like 1 protein-coding 13-PTNLD9-TUMOR_peak_30161 chr2 240404591 240404768 + 9.09697 NA Intergenic Intergenic -82036 NM_006037 9759 Hs.20516 NM_006037 HPRD:05610 HDAC4 AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA histone deacetylase 4 protein-coding 13-PTNLD9-TUMOR_peak_39605 chr4 150442864 150443001 + 9.09697 NA Intergenic Intergenic -556494 NM_001040260 166614 Hs.591683 NM_152619 HPRD:13122 DCLK2 CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2 doublecortin-like kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_16713 chr14 106610185 106610304 + 9.09697 NA Intergenic Intergenic -134025 NR_033375 338004 Hs.569411 NR_033375 ENSG00000229084 LINC00226 C14orf97|NCRNA00226 long intergenic non-protein coding RNA 226 ncRNA 13-PTNLD9-TUMOR_peak_18442 chr16 9102760 9102861 + 9.09697 NA Intergenic Intergenic -45469 NM_003470 7874 Hs.386939 NM_003470 HPRD:03950 USP7 HAUSP|TEF1 ubiquitin specific peptidase 7 (herpes virus-associated) protein-coding 13-PTNLD9-TUMOR_peak_36337 chr3 149119487 149119598 + 9.09697 NA Intergenic Intergenic -23974 NM_014220 4071 Hs.351316 NM_014220 HPRD:01854 TM4SF1 H-L6|L6|M3S1|TAAL6 transmembrane 4 L six family member 1 protein-coding 13-PTNLD9-TUMOR_peak_17914 chr15 87168011 87168175 + 9.09697 NA intron (NM_152336, intron 21 of 23) intron (NM_152336, intron 21 of 23) -307894 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_35163 chr3 98690080 98690225 + 9.09697 NA Intergenic Intergenic -69619 NM_080927 131566 Hs.203691 NM_080927 HPRD:10567 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_20502 chr17 13319239 13319355 + 9.09697 NA Intergenic Intergenic 185947 NM_006042 9955 Hs.462270 NM_006042 HPRD:04958 HS3ST3A1 30ST3A1|3OST3A1 heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1 protein-coding 13-PTNLD9-TUMOR_peak_20270 chr17 2858363 2858704 + 9.09697 NA intron (NM_015085, intron 3 of 24) L1MB5|LINE|L1 10656 NR_110818 101927911 Hs.626373 NR_110818 ENSG00000262884 LOC101927911 - uncharacterized LOC101927911 ncRNA 13-PTNLD9-TUMOR_peak_42456 chr5 142933807 142933994 + 9.09697 NA Intergenic Intergenic -118823 NM_001018075 2908 Hs.122926 NM_000176 HPRD:00679 NR3C1 GCCR|GCR|GR|GRL nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) protein-coding 13-PTNLD9-TUMOR_peak_2808 chr1 110676152 110676303 + 9.09697 NA Intergenic Intergenic -16905 NM_001010898 388662 Hs.128382 NM_001010898 HPRD:18061 SLC6A17 NTT4 solute carrier family 6 (neutral amino acid transporter), member 17 protein-coding 13-PTNLD9-TUMOR_peak_8115 chr10 99356564 99356700 + 9.09697 NA intron (NM_001134670, intron 1 of 2) L4|LINE|RTE 1657 NR_049868 100847017 NR_049868 miRBase:MI0019289 MIR5692C2 - microRNA 5692c-2 ncRNA 13-PTNLD9-TUMOR_peak_56755 chrX 154493549 154493892 + 9.09697 NA 5' UTR (NM_171998, exon 1 of 2) 5' UTR (NM_171998, exon 1 of 2) 154 NM_171998 116442 Hs.632832 NM_171998 HPRD:06703 RAB39B MRX72 RAB39B, member RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_44284 chr6 27064664 27064854 + 9.09697 NA Intergenic CpG 35816 NM_021058 8970 Hs.591807 NM_021058 HIST1H2BJ H2B/r|H2BFR|H2BJ histone cluster 1, H2bj protein-coding 13-PTNLD9-TUMOR_peak_18008 chr15 93268486 93268746 + 9.09697 NA Intergenic Intergenic -69585 NM_207446 400451 Hs.27373 NM_207446 HPRD:14220 FAM174B - family with sequence similarity 174, member B protein-coding 13-PTNLD9-TUMOR_peak_11920 chr12 5566214 5566345 + 9.09697 NA intron (NM_001102654, intron 1 of 1) intron (NM_001102654, intron 1 of 1) 24999 NM_001102654 4908 Hs.99171 NM_002527 HPRD:01219 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 13-PTNLD9-TUMOR_peak_42228 chr5 137785764 137785948 + 9.09697 NA Intergenic Intergenic 11166 NR_073448 51308 Hs.416090 NM_016606 HPRD:16655 REEP2 C5orf19|SGC32445|SPG72 receptor accessory protein 2 protein-coding 13-PTNLD9-TUMOR_peak_16097 chr14 68722703 68722876 + 9.09697 NA intron (NM_133510, intron 7 of 10) intron (NM_133510, intron 7 of 10) 436293 NM_133510 5890 Hs.172587 NM_002877 HPRD:04255 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 13-PTNLD9-TUMOR_peak_19802 chr16 77332578 77332848 + 9.09697 NA intron (NM_199355, intron 17 of 22) AluJb|SINE|Alu 99364 NM_001129979 100130958 Hs.734779 NM_001129979 ENSG00000205078 SYCE1L MRP2 synaptonemal complex central element protein 1-like protein-coding 13-PTNLD9-TUMOR_peak_33020 chr22 27114936 27115141 + 9.09697 NA intron (NR_110543, intron 2 of 5) intron (NR_110543, intron 2 of 5) 46232 NR_110543 102724827 Hs.642767 NR_110543 MIATNB - MIAT neighbor (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_34716 chr3 56166398 56166624 + 9.09697 NA intron (NM_015576, intron 6 of 16) intron (NM_015576, intron 6 of 16) -279889 NR_037502 100500875 NR_037502 MIR3938 - microRNA 3938 ncRNA 13-PTNLD9-TUMOR_peak_43660 chr6 6982223 6982449 + 9.09697 NA Intergenic Intergenic -125494 NM_001168344 6239 Hs.298248 NM_002955 HPRD:03733 RREB1 FINB|HNT|LZ321|RREB-1|Zep-1 ras responsive element binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_22123 chr17 75730781 75730977 + 9.09697 NA Intergenic Intergenic -6238 NR_104134 100132174 Hs.640110 NR_104134 LOC100132174 - uncharacterized LOC100132174 ncRNA 13-PTNLD9-TUMOR_peak_29084 chr2 172983873 172983994 + 9.09697 NA Intergenic MER119|DNA|hAT-Charlie -16455 NM_004405 1746 Hs.419 NM_004405 HPRD:00527 DLX2 TES-1|TES1 distal-less homeobox 2 protein-coding 13-PTNLD9-TUMOR_peak_45252 chr6 47709591 47709878 + 9.09697 NA Intergenic Intergenic -40041 NM_181744 221391 Hs.213717 NM_181744 OPN5 GPR136|GRP136|PGR12|TMEM13 opsin 5 protein-coding 13-PTNLD9-TUMOR_peak_41111 chr5 67265545 67265669 + 9.09697 NA Intergenic Intergenic -220097 NR_105003 102467655 Hs.544102 NR_105003 LOC102467655 - uncharacterized LOC102467655 ncRNA 13-PTNLD9-TUMOR_peak_14619 chr13 40177343 40177478 + 9.09697 NA promoter-TSS (NM_005780) promoter-TSS (NM_005780) -54 NM_005780 10186 Hs.507798 NM_005780 HPRD:09464 LHFP - lipoma HMGIC fusion partner protein-coding 13-PTNLD9-TUMOR_peak_39887 chr4 175344934 175345051 + 9.09697 NA promoter-TSS (NR_036236) promoter-TSS (NR_036236) 46 NR_036236 100423042 NR_036236 miRBase:MI0015882 MIR4276 - microRNA 4276 ncRNA 13-PTNLD9-TUMOR_peak_4585 chr1 179723296 179723427 + 9.09697 NA intron (NM_173509, intron 1 of 4) intron (NM_173509, intron 1 of 4) 11063 NM_173509 148753 Hs.729631 NM_173509 HPRD:14454 FAM163A C1orf76|NDSP family with sequence similarity 163, member A protein-coding 13-PTNLD9-TUMOR_peak_38104 chr4 24765719 24765893 + 9.09697 NA Intergenic MLT1H1-int|LTR|ERVL-MaLR -31279 NM_003102 6649 Hs.2420 NM_003102 HPRD:01708 SOD3 EC-SOD superoxide dismutase 3, extracellular protein-coding 13-PTNLD9-TUMOR_peak_16529 chr14 97828021 97828191 + 9.09697 NA Intergenic L2a|LINE|L2 -97047 NR_110165 101929241 Hs.650839 NR_110165 ENSG00000246084 LOC101929241 - uncharacterized LOC101929241 ncRNA 13-PTNLD9-TUMOR_peak_10001 chr11 61213716 61213902 + 9.09697 NA 3' UTR (NM_017841, exon 4 of 4) 3' UTR (NM_017841, exon 4 of 4) 16212 NM_017841 54949 Hs.313247 NM_017841 SDHAF2 C11orf79|PGL2|SDH5 succinate dehydrogenase complex assembly factor 2 protein-coding 13-PTNLD9-TUMOR_peak_19302 chr16 50014179 50014337 + 9.09697 NA Intergenic Intergenic -44859 NR_104042 255919 Hs.59134 NM_153261 HPRD:08784 CNEP1R1 C16orf69|NEP1-R1|TMEM188|TMP125 CTD nuclear envelope phosphatase 1 regulatory subunit 1 protein-coding 13-PTNLD9-TUMOR_peak_50163 chr8 17623999 17624123 + 9.09697 NA intron (NM_001001924, intron 1 of 14) intron (NM_001001924, intron 1 of 14) 34365 NM_001001924 57509 Hs.7946 NM_020749 HPRD:11376 MTUS1 ATBP|ATIP|ICIS|MP44|MTSG1 microtubule associated tumor suppressor 1 protein-coding 13-PTNLD9-TUMOR_peak_22523 chr18 7950834 7950958 + 9.09697 NA intron (NM_001105244, intron 6 of 32) intron (NM_001105244, intron 6 of 32) 383582 NM_001105244 5797 Hs.49774 NM_002845 HPRD:01479 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase, receptor type, M protein-coding 13-PTNLD9-TUMOR_peak_15907 chr14 59282141 59282318 + 9.09697 NA Intergenic Intergenic -12777 NR_110547 102723742 Hs.232734 NR_110547 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 13-PTNLD9-TUMOR_peak_32092 chr21 30877334 30877478 + 9.09697 NA Intergenic Intergenic -90954 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_43818 chr6 12354898 12355004 + 9.09697 NA Intergenic Intergenic 37635 NR_103808 100887744 NR_103808 RNU6-48P RNU6-48 RNA, U6 small nuclear 48, pseudogene snRNA 13-PTNLD9-TUMOR_peak_50561 chr8 32127088 32127228 + 9.09697 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) -171104 NR_047475 100874286 Hs.147060 NR_047475 NRG1-IT3 - NRG1 intronic transcript 3 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_55536 chrX 11986646 11986882 + 9.09697 NA Intergenic LTR32|LTR|ERVL -169821 NM_014728 9758 Hs.657507 NM_014728 HPRD:10011 FRMPD4 PDZD10|PDZK10 FERM and PDZ domain containing 4 protein-coding 13-PTNLD9-TUMOR_peak_55595 chrX 18008756 18008889 + 9.09697 NA Intergenic MER20|DNA|hAT-Charlie -129365 NM_001172739 10742 Hs.446680 NM_021785 HPRD:02199 RAI2 - retinoic acid induced 2 protein-coding 13-PTNLD9-TUMOR_peak_46230 chr6 147384690 147384950 + 9.09697 NA intron (NR_034115, intron 5 of 10) intron (NR_034115, intron 5 of 10) -140674 NM_001127715 134957 Hs.86320 NM_139244 STXBP5 LGL3|LLGL3|Nbla04300 syntaxin binding protein 5 (tomosyn) protein-coding 13-PTNLD9-TUMOR_peak_12603 chr12 43552029 43552170 + 9.09697 NA Intergenic MLT1G|LTR|ERVL-MaLR 393625 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif, 20 protein-coding 13-PTNLD9-TUMOR_peak_32331 chr21 40225451 40225569 + 9.09697 NA Intergenic Intergenic -3953 NR_109926 101928398 Hs.122403 NR_109926 LOC101928398 - uncharacterized LOC101928398 ncRNA 13-PTNLD9-TUMOR_peak_55688 chrX 31371300 31371497 + 9.09697 NA intron (NM_004022, intron 17 of 33) intron (NM_004022, intron 17 of 33) -86374 NM_004016 1756 Hs.495912 NM_000109 HPRD:02303 DMD BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272|MRX85 dystrophin protein-coding 13-PTNLD9-TUMOR_peak_44932 chr6 39666711 39666913 + 9.09697 NA intron (NM_001289020, intron 3 of 21) L2a|LINE|L2 26369 NM_001289021 221458 Hs.588202 NM_145027 HPRD:10786 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 13-PTNLD9-TUMOR_peak_10996 chr11 96058206 96058326 + 9.09697 NA intron (NM_032427, intron 1 of 4) intron (NM_032427, intron 1 of 4) -16336 NR_036125 100422991 NR_036125 miRBase:MI0014197 MIR1260B - microRNA 1260b ncRNA 13-PTNLD9-TUMOR_peak_20957 chr17 36991592 36991757 + 9.09697 NA intron (NM_001080465, intron 2 of 2) intron (NM_001080465, intron 2 of 2) 5968 NM_001080465 388381 Hs.250182 NM_001080465 ENSG00000214556 C17orf98 - chromosome 17 open reading frame 98 protein-coding 13-PTNLD9-TUMOR_peak_20242 chr17 2099152 2099294 + 9.09697 NA intron (NM_001256827, intron 3 of 11) intron (NM_001256827, intron 3 of 11) -36749 NR_110888 101927839 Hs.665648 NR_110888 LOC101927839 - uncharacterized LOC101927839 ncRNA 13-PTNLD9-TUMOR_peak_30820 chr20 32657172 32657283 + 9.09697 NA intron (NM_016732, intron 2 of 9) intron (NM_016732, intron 2 of 9) 20302 NR_039911 100616434 NR_039911 miRBase:MI0017395 MIR4755 - microRNA 4755 ncRNA 13-PTNLD9-TUMOR_peak_38027 chr4 15526817 15526982 + 9.09697 NA intron (NM_001080522, intron 12 of 37) intron (NM_001080522, intron 12 of 37) 55410 NM_001164720 57545 Hs.590928 NM_020785 ENSG00000048342 CC2D2A JBTS9|MKS6 coiled-coil and C2 domain containing 2A protein-coding 13-PTNLD9-TUMOR_peak_6761 chr10 28109334 28109433 + 9.09697 NA intron (NM_001290020, intron 19 of 19) intron (NM_001290020, intron 19 of 19) -74605 NM_173576 283078 Hs.128193 NM_173576 HPRD:12577 MKX C10orf48|IFRX|IRXL1 mohawk homeobox protein-coding 13-PTNLD9-TUMOR_peak_34152 chr3 29377068 29377210 + 9.09697 NA intron (NM_001003792, intron 1 of 13) intron (NM_001003792, intron 1 of 13) 54336 NM_001177711 27303 Hs.221436 NM_014483 HPRD:16155 RBMS3 - RNA binding motif, single stranded interacting protein 3 protein-coding 13-PTNLD9-TUMOR_peak_26188 chr2 15939632 15939790 + 9.09697 NA Intergenic Intergenic 108805 NR_110201 101926966 Hs.502835 NR_110201 ENSG00000231031 LOC101926966 - uncharacterized LOC101926966 ncRNA 13-PTNLD9-TUMOR_peak_22670 chr18 13981684 13981799 + 9.09697 NA Intergenic L1HS|LINE|L1 -66035 NM_001291911 4158 Hs.248144 NM_000529 HPRD:06304 MC2R ACTHR melanocortin 2 receptor (adrenocorticotropic hormone) protein-coding 13-PTNLD9-TUMOR_peak_27838 chr2 101430088 101430202 + 9.09697 NA Intergenic Intergenic -6468 NM_002518 4862 Hs.156832 NM_002518 HPRD:09137 NPAS2 MOP4|PASD4|bHLHe9 neuronal PAS domain protein 2 protein-coding 13-PTNLD9-TUMOR_peak_35636 chr3 124303453 124303625 + 9.09697 NA promoter-TSS (NM_007064) promoter-TSS (NM_007064) 33 NM_007064 8997 Hs.8004 NM_003947 HPRD:06859 KALRN ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD kalirin, RhoGEF kinase protein-coding 13-PTNLD9-TUMOR_peak_8572 chr10 127351287 127351458 + 9.09697 NA intron (NM_001128202, intron 1 of 3) LTR16A|LTR|ERVL 20341 NM_001128202 387718 Hs.148259 NM_001128202 ENSG00000175018 TEX36 C10orf122|bA383C5.1 testis expressed 36 protein-coding 13-PTNLD9-TUMOR_peak_30266 chr20 1548036 1548293 + 9.09697 NA intron (NM_001083910, intron 2 of 3) intron (NM_001083910, intron 2 of 3) -9821 NM_178460 128646 Hs.729560 NM_178460 HPRD:17931 SIRPD PTPNS1L2|dJ576H24.4 signal-regulatory protein delta protein-coding 13-PTNLD9-TUMOR_peak_10886 chr11 90837523 90837706 + 9.09697 NA Intergenic Intergenic -548589 NR_039711 100616186 NR_039711 miRBase:MI0016852 MIR4490 - microRNA 4490 ncRNA 13-PTNLD9-TUMOR_peak_54476 chr9 115665570 115665763 + 9.09697 NA Intergenic Intergenic -12473 NM_033051 57864 Hs.512668 NM_033051 HPRD:16411 SLC46A2 Ly110|TSCOT solute carrier family 46, member 2 protein-coding 13-PTNLD9-TUMOR_peak_27352 chr2 78034874 78035172 + 9.09697 NA intron (NR_110288, intron 3 of 3) LTR14C|LTR|ERVK -108037 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LOC101927926 - uncharacterized LOC101927926 ncRNA 13-PTNLD9-TUMOR_peak_29421 chr2 194689220 194689452 + 9.09697 NA Intergenic HAL1|LINE|L1 -519657 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LOC101927406 - uncharacterized LOC101927406 ncRNA 13-PTNLD9-TUMOR_peak_26480 chr2 30295233 30295347 + 9.09697 NA Intergenic Intergenic -74460 NM_001127400 51646 Hs.515890 NM_016061 HPRD:18312 YPEL5 - yippee-like 5 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_50888 chr8 49217893 49218092 + 9.09697 NA Intergenic Intergenic -246135 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 13-PTNLD9-TUMOR_peak_20291 chr17 3893846 3894001 + 9.09697 NA Intergenic Intergenic -26165 NM_174954 489 Hs.513870 NM_005173 HPRD:03568 ATP2A3 SERCA3 ATPase, Ca++ transporting, ubiquitous protein-coding 13-PTNLD9-TUMOR_peak_12692 chr12 48690414 48690715 + 9.09697 NA Intergenic Intergenic -32199 NM_181788 341567 Hs.155833 NM_181788 HPRD:17084 H1FNT H1T2 H1 histone family, member N, testis-specific protein-coding 13-PTNLD9-TUMOR_peak_30494 chr20 17005261 17005424 + 9.09697 NA Intergenic Intergenic -201410 NM_001201528 5126 Hs.315186 NM_002594 HPRD:01202 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 13-PTNLD9-TUMOR_peak_18615 chr16 15644766 15644902 + 9.09697 NA intron (NM_033201, intron 2 of 5) intron (NM_033201, intron 2 of 5) 48711 NM_001142469 89927 Hs.401798 NM_033201 HPRD:12382 C16orf45 - chromosome 16 open reading frame 45 protein-coding 13-PTNLD9-TUMOR_peak_15875 chr14 57959639 57959778 + 9.09697 NA intron (NM_001283060, intron 1 of 5) intron (NM_001283060, intron 1 of 5) 873 NM_001283057 55195 Hs.659706 NM_018168 HPRD:12628 C14orf105 - chromosome 14 open reading frame 105 protein-coding 13-PTNLD9-TUMOR_peak_33156 chr22 33141522 33141689 + 9.09697 NA intron (NM_001135774, intron 6 of 13) intron (NM_001135774, intron 6 of 13) -55197 NM_000362 7078 Hs.644633 NM_000362 HPRD:01785 TIMP3 HSMRK222|K222|K222TA2|SFD TIMP metallopeptidase inhibitor 3 protein-coding 13-PTNLD9-TUMOR_peak_52285 chr8 140289617 140289724 + 9.09697 NA Intergenic Intergenic -363434 NM_152888 169044 Hs.117169 NM_152888 HPRD:09885 COL22A1 - collagen, type XXII, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_12100 chr12 9315939 9316284 + 9.09697 NA intron (NM_002864, intron 21 of 35) intron (NM_002864, intron 21 of 35) 44855 NM_002864 5858 Hs.707491 NM_002864 HPRD:07178 PZP CPAMD6 pregnancy-zone protein protein-coding 13-PTNLD9-TUMOR_peak_8155 chr10 101545560 101545656 + 9.09697 NA intron (NM_000392, intron 2 of 31) intron (NM_000392, intron 2 of 31) 3253 NM_000392 1244 Hs.368243 NM_000392 HPRD:03065 ABCC2 ABC30|CMOAT|DJS|MRP2|cMRP ATP-binding cassette, sub-family C (CFTR/MRP), member 2 protein-coding 13-PTNLD9-TUMOR_peak_40866 chr5 53959841 53960001 + 9.09697 NA intron (NR_104658, intron 2 of 2) intron (NR_104658, intron 2 of 2) 39231 NR_104659 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 13-PTNLD9-TUMOR_peak_51975 chr8 128490988 128491135 + 9.09697 NA intron (NR_024393, intron 4 of 4) intron (NR_024393, intron 4 of 4) 3323 NR_024393 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLo-1|LINC00860 cancer susceptibility candidate 8 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_42246 chr5 138180945 138181090 + 9.09697 NA intron (NM_001290309, intron 6 of 16) intron (NM_001290309, intron 6 of 16) -29902 NM_001290312 1495 Hs.445981 NM_001903 HPRD:00285 CTNNA1 CAP102 catenin (cadherin-associated protein), alpha 1, 102kDa protein-coding 13-PTNLD9-TUMOR_peak_9868 chr11 57037000 57037215 + 9.09697 NA Intergenic Intergenic -32180 NM_005161 187 Hs.438311 NM_005161 HPRD:02503 APLNR AGTRL1|APJ|APJR|HG11 apelin receptor protein-coding 13-PTNLD9-TUMOR_peak_9283 chr11 19747334 19747509 + 9.09697 NA intron (NM_182964, intron 1 of 37) intron (NM_182964, intron 1 of 37) -11203 NR_015384 100126784 Hs.64341 NR_015384 LOC100126784 - uncharacterized LOC100126784 ncRNA 13-PTNLD9-TUMOR_peak_35174 chr3 99377947 99378212 + 9.09697 NA intron (NM_020351, intron 1 of 3) intron (NM_020351, intron 1 of 3) 20639 NM_001850 1295 Hs.654548 NM_001850 HPRD:00372 COL8A1 C3orf7 collagen, type VIII, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_20564 chr17 17632284 17632480 + 9.09697 NA intron (NM_030665, intron 2 of 5) intron (NM_030665, intron 2 of 5) 47595 NM_030665 10743 Hs.655395 NM_030665 HPRD:07406 RAI1 SMCR|SMS retinoic acid induced 1 protein-coding 13-PTNLD9-TUMOR_peak_38474 chr4 58029865 58030017 + 9.09697 NA intron (NR_034081, intron 1 of 4) CpG -53390 NM_001253835 3490 Hs.479808 NM_001553 HPRD:04183 IGFBP7 AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF insulin-like growth factor binding protein 7 protein-coding 13-PTNLD9-TUMOR_peak_32105 chr21 32489741 32489916 + 9.09697 NA TTS (NM_003253) TTS (NM_003253) -79033 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 13-PTNLD9-TUMOR_peak_31745 chr20 59702803 59702959 + 9.09697 NA Intergenic MLT1C|LTR|ERVL-MaLR 48761 NR_109919 100506470 Hs.125674 NR_109919 ENSG00000229606 LOC100506470 - uncharacterized LOC100506470 ncRNA 13-PTNLD9-TUMOR_peak_50420 chr8 27132026 27132178 + 9.09697 NA Intergenic Intergenic -16146 NM_001283054 81551 Hs.201058 NM_030795 HPRD:18120 STMN4 RB3 stathmin-like 4 protein-coding 13-PTNLD9-TUMOR_peak_26681 chr2 42345350 42345623 + 9.09697 NA Intergenic Intergenic -51004 NM_001145076 27436 Hs.713173 NM_019063 HPRD:06310 EML4 C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120 echinoderm microtubule associated protein like 4 protein-coding 13-PTNLD9-TUMOR_peak_26635 chr2 38727326 38727633 + 9.09697 NA intron (NR_110259, intron 1 of 4) intron (NR_110259, intron 1 of 4) 15403 NR_110259 101929596 Hs.537341 NR_110259 LOC101929596 - uncharacterized LOC101929596 ncRNA 13-PTNLD9-TUMOR_peak_29805 chr2 218154722 218154876 + 9.09697 NA intron (NR_026597, intron 12 of 12) intron (NR_026597, intron 12 of 12) -430017 NM_003284 7141 Hs.3017 NM_003284 HPRD:01830 TNP1 TP1 transition protein 1 (during histone to protamine replacement) protein-coding 13-PTNLD9-TUMOR_peak_7551 chr10 69362167 69362321 + 9.09697 NA intron (NM_001291133, intron 4 of 8) intron (NM_001291133, intron 4 of 8) 63199 NM_001127384 29119 Hs.21375 NM_013266 HPRD:09639 CTNNA3 ARVD13|VR22 catenin (cadherin-associated protein), alpha 3 protein-coding 13-PTNLD9-TUMOR_peak_27144 chr2 67980205 67980404 + 9.09697 NA Intergenic L2a|LINE|L2 72390 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LOC101927701 - uncharacterized LOC101927701 ncRNA 13-PTNLD9-TUMOR_peak_43869 chr6 13795455 13795606 + 9.09697 NA intron (NM_001031713, intron 6 of 8) intron (NM_001031713, intron 6 of 8) 19262 NM_001031713 63933 Hs.214043 NM_022102 HPRD:12833 MCUR1 C6orf79|CCDC90A mitochondrial calcium uniporter regulator 1 protein-coding 13-PTNLD9-TUMOR_peak_27777 chr2 98765881 98766030 + 9.09697 NA intron (NM_144992, intron 7 of 27) MER51A|LTR|ERV1 62360 NM_144992 200403 Hs.269977 NM_144992 HPRD:14510 VWA3B - von Willebrand factor A domain containing 3B protein-coding 13-PTNLD9-TUMOR_peak_14618 chr13 40090310 40090530 + 9.09697 NA intron (NM_005780, intron 2 of 3) intron (NM_005780, intron 2 of 3) 86936 NM_005780 10186 Hs.507798 NM_005780 HPRD:09464 LHFP - lipoma HMGIC fusion partner protein-coding 13-PTNLD9-TUMOR_peak_39285 chr4 125183508 125183654 + 9.09697 NA Intergenic Intergenic 296008 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LOC101927087 - uncharacterized LOC101927087 ncRNA 13-PTNLD9-TUMOR_peak_17406 chr15 62929874 62929978 + 9.09697 NA non-coding (NR_026897, exon 3 of 3) non-coding (NR_026897, exon 3 of 3) 7454 NR_026897 197003 Hs.352253 NM_152648 ENSG00000259458 MGC15885 - uncharacterized protein MGC15885 ncRNA 13-PTNLD9-TUMOR_peak_24939 chr19 39735911 39736055 + 9.09697 NA promoter-TSS (NM_172139) promoter-TSS (NM_172139) -372 NM_172139 282617 Hs.406744 NM_172139 HPRD:09587 IFNL3 IL-28B|IL28B|IL28C interferon, lambda 3 protein-coding 13-PTNLD9-TUMOR_peak_14424 chr13 23895687 23895852 + 9.09697 NA intron (NM_000231, intron 7 of 7) MER44B|DNA|TcMar-Tigger 53913 NM_001278055 26278 Hs.159492 NM_014363 HPRD:05135 SACS ARSACS|DNAJC29|PPP1R138|SPAX6 sacsin molecular chaperone protein-coding 13-PTNLD9-TUMOR_peak_52070 chr8 131108874 131109022 + 9.09697 NA intron (NM_018482, intron 24 of 29) intron (NM_018482, intron 24 of 29) -11934 NR_045385 100507117 Hs.106015 NR_045385 ASAP1-IT2 - ASAP1 intronic transcript 2 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_19538 chr16 66652539 66652785 + 9.09697 NA 3' UTR (NM_181521, exon 4 of 4) 3' UTR (NM_181521, exon 4 of 4) 14028 NR_037619 123920 Hs.298198 NM_144601 HPRD:16259 CMTM3 BNAS2|CKLFSF3 CKLF-like MARVEL transmembrane domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_43628 chr6 6277781 6277902 + 9.09697 NA intron (NM_000129, intron 3 of 14) MER49|LTR|ERV1 43083 NM_000129 2162 Hs.335513 NM_000129 HPRD:00604 F13A1 F13A coagulation factor XIII, A1 polypeptide protein-coding 13-PTNLD9-TUMOR_peak_9563 chr11 36522073 36522222 + 9.09697 NA intron (NM_145803, intron 3 of 7) L2a|LINE|L2 9716 NM_145803 7189 Hs.444172 NM_004620 TRAF6 MGC:3310|RNF85 TNF receptor-associated factor 6, E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_8291 chr10 106349715 106349865 + 9.09697 NA Intergenic L2c|LINE|L2 -51069 NM_014978 22986 Hs.671950 NM_014978 HPRD:12100 SORCS3 SORCS sortilin-related VPS10 domain containing receptor 3 protein-coding 13-PTNLD9-TUMOR_peak_54409 chr9 112542392 112542675 + 9.09697 NA promoter-TSS (NM_147150) promoter-TSS (NM_147150) -44 NM_147150 445815 Hs.591908 NM_007203 HPRD:09197 PALM2-AKAP2 AKAP2 PALM2-AKAP2 readthrough protein-coding 13-PTNLD9-TUMOR_peak_2956 chr1 115732689 115732939 + 9.09697 NA Intergenic MIRc|SINE|MIR -100693 NM_005725 10100 Hs.310458 NM_005725 HPRD:18233 TSPAN2 NET3|TSN2|TSPAN-2 tetraspanin 2 protein-coding 13-PTNLD9-TUMOR_peak_16988 chr15 33571139 33571256 + 9.09697 NA Intergenic LTR81A|LTR|Gypsy 31249 NR_120326 101928134 Hs.133851 NR_120326 LOC101928134 - uncharacterized LOC101928134 ncRNA 13-PTNLD9-TUMOR_peak_20862 chr17 33047884 33048138 + 9.09697 NA Intergenic Intergenic 140243 NM_207313 124842 Hs.310482 NM_207313 HPRD:14030 TMEM132E - transmembrane protein 132E protein-coding 13-PTNLD9-TUMOR_peak_18342 chr16 4063475 4063664 + 9.09697 NA intron (NM_001116, intron 2 of 10) intron (NM_001116, intron 2 of 10) -63124 NR_120311 102724927 Hs.364739 NR_120311 LOC102724927 - uncharacterized LOC102724927 ncRNA 13-PTNLD9-TUMOR_peak_14795 chr13 52923232 52923458 + 9.09697 NA Intergenic Intergenic 14915 NR_120400 103191607 NR_120400 LOC103191607 - uncharacterized LOC103191607 ncRNA 13-PTNLD9-TUMOR_peak_35263 chr3 107657209 107657332 + 9.09697 NA Intergenic Intergenic 55218 NR_015394 285205 Hs.134882 NR_015394 ENSG00000240423 LINC00636 - long intergenic non-protein coding RNA 636 ncRNA 13-PTNLD9-TUMOR_peak_26907 chr2 50141555 50141673 + 9.09697 NA Intergenic LTR16C|LTR|ERVL 433280 NM_138735 9378 Hs.637685 NM_004801 HPRD:11858 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 13-PTNLD9-TUMOR_peak_5788 chr1 230256359 230256749 + 9.09697 NA intron (NM_004481, intron 1 of 15) intron (NM_004481, intron 1 of 15) 53612 NM_004481 2590 Hs.743964 NM_004481 HPRD:03782 GALNT2 GalNAc-T2 polypeptide N-acetylgalactosaminyltransferase 2 protein-coding 13-PTNLD9-TUMOR_peak_8079 chr10 97849502 97849727 + 9.09697 NA intron (NR_038444, intron 1 of 5) CpG 378 NR_038444 728558 Hs.538374 NR_038444 ENSG00000226688 ENTPD1-AS1 - ENTPD1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_32335 chr21 40297910 40298090 + 9.09697 NA intron (NR_120405, intron 1 of 3) intron (NR_120405, intron 1 of 3) 12353 NR_120405 400867 Hs.689509 NR_120405 LOC400867 - uncharacterized LOC400867 ncRNA 13-PTNLD9-TUMOR_peak_45164 chr6 44934617 44934751 + 9.09697 NA intron (NM_003599, intron 6 of 10) intron (NM_003599, intron 6 of 10) 230823 NR_030313 693171 NR_030313 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 13-PTNLD9-TUMOR_peak_17156 chr15 43566425 43566573 + 9.09697 NA Intergenic Intergenic -7444 NM_201631 9333 Hs.129719 NM_004245 HPRD:11949 TGM5 TGASE5|TGASEX|TGM6|TGMX|TGX transglutaminase 5 protein-coding 13-PTNLD9-TUMOR_peak_55930 chrX 56590829 56591086 + 9.09697 NA exon (NM_013444, exon 1 of 1) exon (NM_013444, exon 1 of 1) 931 NM_013444 29978 Hs.179309 NM_013444 HPRD:02224 UBQLN2 ALS15|CHAP1|DSK2|N4BP4|PLIC2 ubiquilin 2 protein-coding 13-PTNLD9-TUMOR_peak_33216 chr22 37518379 37518517 + 9.09697 NA Intergenic Intergenic -12845 NM_001289000 164656 Hs.370885 NM_153609 HPRD:10270 TMPRSS6 IRIDA transmembrane protease, serine 6 protein-coding 13-PTNLD9-TUMOR_peak_51319 chr8 95487135 95487479 + 9.09697 NA promoter-TSS (NM_012415) promoter-TSS (NM_012415) 36 NM_012415 25788 Hs.30561 NM_006550 HPRD:05049 RAD54B RDH54 RAD54 homolog B (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_10028 chr11 61672134 61672249 + 9.09697 NA intron (NM_001271686, intron 5 of 8) intron (NM_001271686, intron 5 of 8) 12890 NM_013401 5866 Hs.13759 NM_013401 HPRD:10181 RAB3IL1 GRAB RAB3A interacting protein (rabin3)-like 1 protein-coding 13-PTNLD9-TUMOR_peak_37129 chr3 187770152 187770379 + 9.09697 NA Intergenic Intergenic -101396 NM_001167672 4026 Hs.720220 NM_005578 HPRD:02828 LPP - LIM domain containing preferred translocation partner in lipoma protein-coding 13-PTNLD9-TUMOR_peak_46959 chr7 17812949 17813102 + 9.09697 NA Intergenic Intergenic 167106 NM_015132 23161 Hs.487648 NM_015132 HPRD:09418 SNX13 RGS-PX1 sorting nexin 13 protein-coding 13-PTNLD9-TUMOR_peak_29810 chr2 218298970 218299087 + 9.09697 NA intron (NR_026597, intron 3 of 12) intron (NR_026597, intron 3 of 12) 322288 NR_026597 729582 Hs.572788 NR_026597 ENSG00000231672 DIRC3 - disrupted in renal carcinoma 3 ncRNA 13-PTNLD9-TUMOR_peak_28341 chr2 124490226 124490400 + 9.09697 NA Intergenic L4|LINE|RTE -292551 NM_130773 129684 Hs.660653 NM_130773 HPRD:16732 CNTNAP5 caspr5 contactin associated protein-like 5 protein-coding 13-PTNLD9-TUMOR_peak_14556 chr13 32552368 32552478 + 9.09697 NA Intergenic Intergenic -53014 NM_023037 10129 Hs.507669 NM_023037 HPRD:10821 FRY 13CDNA73|214K23.2|C13orf14|CG003|bA207N4.2|bA37E23.1 furry homolog (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_55092 chr9 140704714 140704907 + 9.09697 NA intron (NM_024757, intron 18 of 26) intron (NM_024757, intron 18 of 26) -28061 NR_030333 693187 NR_030333 miRBase:MI0003615 MIR602 MIRN602|hsa-mir-602 microRNA 602 ncRNA 13-PTNLD9-TUMOR_peak_19334 chr16 52124084 52124208 + 9.09697 NA intron (NR_104655, intron 1 of 2) intron (NR_104655, intron 1 of 2) 4953 NR_104655 102467079 Hs.98466 NR_104655 LOC102467079 - uncharacterized LOC102467079 ncRNA 13-PTNLD9-TUMOR_peak_42573 chr5 148761571 148761676 + 9.09697 NA Intergenic Intergenic -2785 NM_014443 27190 Hs.156979 NM_014443 HPRD:05217 IL17B IL-17B|IL-20|NIRF|ZCYTO7 interleukin 17B protein-coding 13-PTNLD9-TUMOR_peak_41558 chr5 95720215 95720330 + 9.09697 NA Intergenic Intergenic 47591 NM_001177875 5122 Hs.78977 NM_000439 HPRD:01201 PCSK1 BMIQ12|NEC1|PC1|PC3|SPC3 proprotein convertase subtilisin/kexin type 1 protein-coding 13-PTNLD9-TUMOR_peak_34080 chr3 24101659 24101768 + 9.09697 NA Intergenic Intergenic 43025 NR_026834 152024 Hs.385606 NR_026834 ENSG00000224074 LINC00691 - long intergenic non-protein coding RNA 691 ncRNA 13-PTNLD9-TUMOR_peak_46776 chr7 5222832 5223034 + 9.09697 NA Intergenic Intergenic -6902 NM_001033518 26100 Hs.122363 NM_015610 HPRD:15679 WIPI2 ATG18B|Atg21|WIPI-2 WD repeat domain, phosphoinositide interacting 2 protein-coding 13-PTNLD9-TUMOR_peak_38028 chr4 15667441 15667567 + 9.09697 NA Intergenic Intergenic -10469 NM_001193535 26234 Hs.643433 NM_012161 HPRD:05739 FBXL5 FBL4|FBL5|FLR1 F-box and leucine-rich repeat protein 5 protein-coding 13-PTNLD9-TUMOR_peak_37145 chr3 188345541 188345656 + 9.09697 NA intron (NM_001167671, intron 6 of 10) L1PA11|LINE|L1 -59144 NR_046623 100873917 Hs.674993 NR_046623 LPP-AS1 - LPP antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_48907 chr7 123438106 123438387 + 9.09697 NA Intergenic Intergenic -7481 NR_125730 103625684 NR_125730 RNU6-2 U6-2 RNA, U6 small nuclear 2 snRNA 13-PTNLD9-TUMOR_peak_23249 chr18 54557951 54558102 + 9.09697 NA intron (NM_015285, intron 21 of 27) intron (NM_015285, intron 21 of 27) 181324 NR_048536 100885779 Hs.742426 NR_048536 ENSG00000258609 LINC-ROR lincRNA-RoR long intergenic non-protein coding RNA, regulator of reprogramming ncRNA 13-PTNLD9-TUMOR_peak_7416 chr10 55074711 55074820 + 9.09697 NA Intergenic LTR40a|LTR|ERVL -543305 NM_000242 4153 Hs.499674 NM_000242 HPRD:01107 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose-binding lectin (protein C) 2, soluble protein-coding 13-PTNLD9-TUMOR_peak_22853 chr18 28591488 28591662 + 9.09697 NA intron (NM_001941, intron 9 of 15) intron (NM_001941, intron 9 of 15) 31206 NM_001941 1825 Hs.41690 NM_001941 HPRD:02604 DSC3 CDHF3|DSC|DSC1|DSC2|DSC4|HT-CP desmocollin 3 protein-coding 13-PTNLD9-TUMOR_peak_37998 chr4 11430612 11430917 + 9.09697 NA promoter-TSS (NM_005114) promoter-TSS (NM_005114) -227 NM_005114 9957 Hs.507348 NM_005114 HS3ST1 3OST|3OST1 heparan sulfate (glucosamine) 3-O-sulfotransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_46934 chr7 16844527 16844683 + 9.09697 NA 5' UTR (NM_006408, exon 1 of 8) 5' UTR (NM_006408, exon 1 of 8) 133 NM_006408 10551 Hs.530009 NM_006408 HPRD:05896 AGR2 AG2|GOB-4|HAG-2|HEL-S-116|PDIA17|XAG-2 anterior gradient 2 protein-coding 13-PTNLD9-TUMOR_peak_9407 chr11 30695655 30695759 + 9.09697 NA Intergenic L1PA4|LINE|L1 -87777 NM_001145399 744 Hs.289795 NM_001584 HPRD:02947 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_19381 chr16 55471647 55471884 + 9.09697 NA Intergenic Intergenic -41316 NM_004530 4313 Hs.513617 NM_004530 HPRD:00386 MMP2 CLG4|CLG4A|MMP-II|MONA|TBE-1 matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase) protein-coding 13-PTNLD9-TUMOR_peak_27883 chr2 102875134 102875267 + 9.09697 NA Intergenic Intergenic -52762 NM_001282408 9173 Hs.66 NM_003856 HPRD:03123 IL1RL1 DER4|FIT-1|IL33R|ST2|ST2L|ST2V|T1 interleukin 1 receptor-like 1 protein-coding 13-PTNLD9-TUMOR_peak_54547 chr9 117541904 117542022 + 9.09697 NA Intergenic Intergenic 12847 NM_001204344 9966 Hs.23349 NM_005118 HPRD:04956 TNFSF15 TL1|TL1A|VEGI|VEGI192A tumor necrosis factor (ligand) superfamily, member 15 protein-coding 13-PTNLD9-TUMOR_peak_43854 chr6 13454240 13454432 + 9.09697 NA intron (NM_018988, intron 1 of 1) MLT1C|LTR|ERVL-MaLR 17959 NR_038459 54438 Hs.484686 NM_018988 HPRD:13574 GFOD1 ADG-90|C6orf114 glucose-fructose oxidoreductase domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_17126 chr15 42236615 42236743 + 9.09697 NA intron (NM_139265, intron 2 of 5) intron (NM_139265, intron 2 of 5) 23064 NR_120332 101928363 Hs.680195 NR_120332 LOC101928363 - uncharacterized LOC101928363 ncRNA 13-PTNLD9-TUMOR_peak_31252 chr20 45260000 45260104 + 9.09697 NA intron (NM_001011554, intron 2 of 13) MIR3|SINE|MIR 20048 NM_001193342 64849 Hs.655498 NM_022829 HPRD:10450 SLC13A3 NADC3|SDCT2 solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 protein-coding 13-PTNLD9-TUMOR_peak_16361 chr14 79511753 79511890 + 9.09697 NA intron (NR_073547, intron 14 of 20) intron (NR_073547, intron 14 of 20) -233861 NM_138970 9369 Hs.368307 NM_004796 NRXN3 C14orf60 neurexin 3 protein-coding 13-PTNLD9-TUMOR_peak_30966 chr20 36277558 36277699 + 9.09697 NA Intergenic Intergenic -26107 NR_047461 100861522 Hs.580680 NR_047461 ENSG00000225759 LINC00489 - long intergenic non-protein coding RNA 489 ncRNA 13-PTNLD9-TUMOR_peak_42111 chr5 133787688 133787830 + 9.09697 NA Intergenic Intergenic -17021 NR_105044 102546229 NR_105044 LOC102546229 - uncharacterized LOC102546229 ncRNA 13-PTNLD9-TUMOR_peak_44835 chr6 36908862 36908985 + 9.09697 NA Intergenic SVA_C|Other|Other -7116 NM_001199159 221476 Hs.25391 NM_153370 ENSG00000164530 PI16 CRISP9|MSMBBP|PSPBP peptidase inhibitor 16 protein-coding 13-PTNLD9-TUMOR_peak_54727 chr9 125994738 125994861 + 9.09697 NA intron (NR_033234, intron 1 of 18) intron (NR_033234, intron 1 of 18) 36044 NM_018387 55342 Hs.287659 NM_018387 HPRD:10257 STRBP HEL162|ILF3L|SPNR|p74 spermatid perinuclear RNA binding protein protein-coding 13-PTNLD9-TUMOR_peak_34160 chr3 30383926 30384059 + 9.09697 NA Intergenic Intergenic -264002 NM_001024847 7048 Hs.82028 NM_003242 HPRD:01823 TGFBR2 AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TGFR-2|TGFbeta-RII transforming growth factor, beta receptor II (70/80kDa) protein-coding 13-PTNLD9-TUMOR_peak_34874 chr3 66479284 66479406 + 9.09697 NA intron (NM_015541, intron 3 of 18) intron (NM_015541, intron 3 of 18) 71500 NM_015541 26018 Hs.518055 NM_015541 HPRD:10057 LRIG1 LIG-1|LIG1 leucine-rich repeats and immunoglobulin-like domains 1 protein-coding 13-PTNLD9-TUMOR_peak_17582 chr15 71335850 71335979 + 9.09697 NA intron (NM_001199017, intron 15 of 15) intron (NM_001199017, intron 15 of 15) 71925 NM_001102658 196993 Hs.646533 NM_001102658 ENSG00000225362 CT62 - cancer/testis antigen 62 protein-coding 13-PTNLD9-TUMOR_peak_39871 chr4 172801418 172801591 + 9.09697 NA intron (NM_001034845, intron 2 of 12) intron (NM_001034845, intron 2 of 12) 66929 NM_001034845 442117 Hs.386236 NM_001034845 ENSG00000174473 GALNTL6 GALNACT20|GALNT17|GalNAc-T6L polypeptide N-acetylgalactosaminyltransferase-like 6 protein-coding 13-PTNLD9-TUMOR_peak_52371 chr8 142883846 142884035 + 9.09697 NA Intergenic Intergenic -366610 NR_102364 389690 Hs.689547 NM_207414 HPRD:13480 MROH5 - maestro heat-like repeat family member 5 protein-coding 13-PTNLD9-TUMOR_peak_34428 chr3 46120442 46120538 + 9.09697 NA Intergenic Intergenic -51511 NM_005283 2829 Hs.248116 NM_005283 HPRD:02774 XCR1 CCXCR1|GPR5 chemokine (C motif) receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_43918 chr6 15715340 15715531 + 9.09697 NA Intergenic MLT1N2|LTR|ERVL-MaLR -52146 NM_001271669 84062 Hs.571148 NM_032122 HPRD:06190 DTNBP1 BLOC1S8|DBND|HPS7|My031|SDY dystrobrevin binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_595 chr1 20063983 20064101 + 9.09697 NA intron (NM_181719, intron 12 of 15) intron (NM_181719, intron 12 of 15) 62368 NM_181719 255104 Hs.656313 NM_181719 HPRD:14140 TMCO4 - transmembrane and coiled-coil domains 4 protein-coding 13-PTNLD9-TUMOR_peak_13342 chr12 72332604 72332699 + 9.09697 NA promoter-TSS (NM_173353) promoter-TSS (NM_173353) 25 NM_173353 121278 Hs.736576 NM_173353 HPRD:09594 TPH2 ADHD7|NTPH tryptophan hydroxylase 2 protein-coding 13-PTNLD9-TUMOR_peak_6781 chr10 29024080 29024220 + 9.09697 NA Intergenic Intergenic -8429 NR_120652 101929218 Hs.224866 NR_120652 LINC01517 - long intergenic non-protein coding RNA 1517 ncRNA 13-PTNLD9-TUMOR_peak_40923 chr5 55892114 55892296 + 9.09697 NA intron (NM_001287053, intron 1 of 5) intron (NM_001287053, intron 1 of 5) 9854 NM_001287053 101928448 Hs.208052 NM_001287053 LOC101928448 - uncharacterized LOC101928448 protein-coding 13-PTNLD9-TUMOR_peak_13453 chr12 89619680 89619881 + 9.09697 NA Intergenic Intergenic 126856 NM_001946 1848 Hs.298654 NM_001946 HPRD:04124 DUSP6 HH19|MKP3|PYST1 dual specificity phosphatase 6 protein-coding 13-PTNLD9-TUMOR_peak_30314 chr20 3293770 3293920 + 9.09697 NA intron (NM_001009984, intron 20 of 36) intron (NM_001009984, intron 20 of 36) -73958 NM_001174089 83959 Hs.105607 NM_032034 HPRD:15392 SLC4A11 BTR1|CDPD1|CHED2|NABC1|dJ794I6.2 solute carrier family 4, sodium borate transporter, member 11 protein-coding 13-PTNLD9-TUMOR_peak_6063 chr1 240994810 240994958 + 9.09697 NA intron (NM_002924, intron 9 of 17) L2c|LINE|L2 -219422 NM_022469 64388 Hs.98206 NM_022469 HPRD:16390 GREM2 CKTSF1B2|DAND3|PRDC gremlin 2, DAN family BMP antagonist protein-coding 13-PTNLD9-TUMOR_peak_10603 chr11 73618288 73618450 + 9.09697 NA intron (NM_001267805, intron 7 of 12) L1MDa|LINE|L1 30355 NM_001267803 80227 Hs.525017 NM_025155 HPRD:07761 PAAF1 PAAF|Rpn14|WDR71 proteasomal ATPase-associated factor 1 protein-coding 13-PTNLD9-TUMOR_peak_17342 chr15 57904195 57904357 + 9.09697 NA intron (NR_104371, intron 2 of 16) intron (NR_104371, intron 2 of 16) 20174 NM_001018091 145781 Hs.437256 NM_001018090 GCOM1 GRINL1A|Gcom2|MYZAP|MYZAP-POLR2M|gcom GRINL1A complex locus 1 protein-coding 13-PTNLD9-TUMOR_peak_25990 chr2 7017716 7018003 + 9.09697 NA promoter-TSS (NM_080657) promoter-TSS (NM_080657) 63 NM_080657 91543 Hs.17518 NM_080657 HPRD:07423 RSAD2 2510004L01Rik|cig33|cig5|vig1 radical S-adenosyl methionine domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_37850 chr4 7931453 7931580 + 9.09697 NA intron (NM_198595, intron 1 of 16) intron (NM_198595, intron 1 of 16) 10137 NM_198595 60312 Hs.529369 NM_021638 HPRD:09747 AFAP1 AFAP|AFAP-110|AFAP110 actin filament associated protein 1 protein-coding 13-PTNLD9-TUMOR_peak_46124 chr6 137494249 137494415 + 9.09697 NA intron (NM_181309, intron 1 of 5) AluSz|SINE|Alu 453 NM_052962 116379 Hs.126891 NM_052962 HPRD:05973 IL22RA2 CRF2-10|CRF2-S1|CRF2X|IL-22BP|IL-22R-alpha-2|IL-22RA2|ZCYTOR16 interleukin 22 receptor, alpha 2 protein-coding 13-PTNLD9-TUMOR_peak_19553 chr16 66995048 66995148 + 9.09697 NA promoter-TSS (NM_024922) promoter-TSS (NM_024922) -34 NM_001185177 23491 Hs.268700 NM_012122 HPRD:07014 CES3 ES31 carboxylesterase 3 protein-coding 13-PTNLD9-TUMOR_peak_44873 chr6 37515598 37515709 + 9.09697 NA Intergenic Intergenic 7545 NR_039669 100616413 NR_039669 miRBase:MI0016810 MIR4462 - microRNA 4462 ncRNA 13-PTNLD9-TUMOR_peak_6559 chr10 15279437 15279573 + 9.09697 NA intron (NM_001010924, intron 5 of 7) intron (NM_001010924, intron 5 of 7) -68810 NM_004808 9397 Hs.60339 NM_004808 NMT2 - N-myristoyltransferase 2 protein-coding 13-PTNLD9-TUMOR_peak_22490 chr18 3967047 3967342 + 9.09697 NA intron (NR_102696, intron 1 of 4) intron (NR_102696, intron 1 of 4) 4841 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 13-PTNLD9-TUMOR_peak_14946 chr13 92639111 92639238 + 9.09697 NA intron (NM_004466, intron 6 of 7) intron (NM_004466, intron 6 of 7) 365286 NR_120382 100873970 Hs.567269 NR_120382 GPC5-AS2 - GPC5 antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_8401 chr10 117614403 117614510 + 9.09697 NA intron (NM_207303, intron 28 of 28) intron (NM_207303, intron 28 of 28) 417363 NM_145793 2674 Hs.388347 NM_005264 HPRD:03291 GFRA1 GDNFR|GDNFRA|GFR-ALPHA-1|RET1L|RETL1|TRNR1 GDNF family receptor alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_32182 chr21 34978216 34978329 + 9.09697 NA intron (NM_145858, intron 6 of 12) intron (NM_145858, intron 6 of 12) -17258 NM_017613 29980 Hs.436341 NM_017613 HPRD:09926 DONSON B17|C21orf60 downstream neighbor of SON protein-coding 13-PTNLD9-TUMOR_peak_52073 chr8 131218764 131218886 + 9.09697 NA intron (NM_018482, intron 5 of 29) intron (NM_018482, intron 5 of 29) 89954 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_39295 chr4 126245076 126245199 + 9.09697 NA intron (NM_024582, intron 1 of 16) intron (NM_024582, intron 1 of 16) 7570 NM_024582 79633 Hs.563205 NM_024582 HPRD:07637 FAT4 CDHF14|CDHR11|FAT-J|FATJ|NBLA00548|VMLDS2 FAT atypical cadherin 4 protein-coding 13-PTNLD9-TUMOR_peak_11795 chr12 1470030 1470128 + 9.09697 NA intron (NM_001301248, intron 14 of 18) AluJb|SINE|Alu -139578 NR_028415 100292680 Hs.391695 NR_028415 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 13-PTNLD9-TUMOR_peak_6182 chr1 247242050 247242192 + 9.09697 NA promoter-TSS (NR_037894) promoter-TSS (NR_037894) -6 NM_033213 93474 Hs.732305 NM_033213 ZNF670 - zinc finger protein 670 protein-coding 13-PTNLD9-TUMOR_peak_20876 chr17 33642453 33642605 + 9.09697 NA Intergenic L1M7|LINE|L1 58191 NM_001104589 91607 Hs.745059 NM_152270 HPRD:08178 SLFN11 SLFN8/9 schlafen family member 11 protein-coding 13-PTNLD9-TUMOR_peak_20650 chr17 19912581 19912750 + 9.09697 NA promoter-TSS (NM_001243439) promoter-TSS (NM_001243439) 16 NM_001243439 92521 Hs.431045 NM_152904 HPRD:12301 SPECC1 CYTSB|HCMOGT-1|HCMOGT1|NSP sperm antigen with calponin homology and coiled-coil domains 1 protein-coding 13-PTNLD9-TUMOR_peak_14965 chr13 97636355 97636494 + 9.09697 NA promoter-TSS (NR_051966) promoter-TSS (NR_051966) 2 NR_051966 100887754 Hs.617003 NR_051966 LINC00359 - long intergenic non-protein coding RNA 359 ncRNA 13-PTNLD9-TUMOR_peak_40909 chr5 55624769 55624884 + 9.09697 NA Intergenic Intergenic -95640 NM_024669 79722 Hs.436214 NM_024669 HPRD:07758 ANKRD55 - ankyrin repeat domain 55 protein-coding 13-PTNLD9-TUMOR_peak_29076 chr2 172664367 172664497 + 9.09697 NA intron (NR_047549, intron 12 of 16) intron (NR_047549, intron 12 of 16) 86384 NR_047549 8604 Hs.470608 NM_003705 HPRD:04719 SLC25A12 AGC1|ARALAR solute carrier family 25 (aspartate/glutamate carrier), member 12 protein-coding 13-PTNLD9-TUMOR_peak_24941 chr19 39758872 39759016 + 9.09697 NA promoter-TSS (NM_172138) promoter-TSS (NM_172138) -213 NM_172138 282616 Hs.567792 NM_172138 HPRD:09586 IFNL2 IL-28A|IL28A interferon, lambda 2 protein-coding 13-PTNLD9-TUMOR_peak_26931 chr2 53717923 53718129 + 9.09697 NA Intergenic LTR18A|LTR|ERVL -276903 NM_001008708 494143 Hs.585944 NM_001008708 HPRD:17418 CHAC2 - ChaC, cation transport regulator homolog 2 (E. coli) protein-coding 13-PTNLD9-TUMOR_peak_34719 chr3 56391478 56391654 + 9.09697 NA intron (NM_015576, intron 2 of 16) intron (NM_015576, intron 2 of 16) 110825 NM_015576 26059 Hs.476389 NM_015576 HPRD:10810 ERC2 CAST|CAST1|ELKSL|SPBC110|Spc110 ELKS/RAB6-interacting/CAST family member 2 protein-coding 13-PTNLD9-TUMOR_peak_47167 chr7 30478906 30479010 + 9.09697 NA intron (NM_006092, intron 9 of 13) L1HS|LINE|L1 39435 NM_006092 10392 Hs.405153 NM_006092 HPRD:05815 NOD1 CARD4|CLR7.1|NLRC1 nucleotide-binding oligomerization domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_41641 chr5 102294872 102295021 + 9.09697 NA intron (NM_138766, intron 11 of 23) intron (NM_138766, intron 11 of 23) 93419 NM_001177306 5066 Hs.369430 NM_000919 HPRD:01361 PAM PAL|PHM peptidylglycine alpha-amidating monooxygenase protein-coding 13-PTNLD9-TUMOR_peak_56295 chrX 103671346 103671478 + 9.09697 NA Intergenic Intergenic -139584 NM_017416 26280 Hs.675519 NM_017416 HPRD:02231 IL1RAPL2 IL-1R9|IL1R9|IL1RAPL-2|TIGIRR-1 interleukin 1 receptor accessory protein-like 2 protein-coding 13-PTNLD9-TUMOR_peak_38947 chr4 100484508 100484639 + 9.09697 NA promoter-TSS (NM_001300785) promoter-TSS (NM_001300785) 252 NM_152292 93587 Hs.380412 NM_152292 HPRD:15241 TRMT10A HEL-S-88|RG9MTD2|TRM10 tRNA methyltransferase 10 homolog A (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_41269 chr5 73475179 73475290 + 9.09697 NA Intergenic Intergenic 128916 NR_105009 102503429 Hs.519391 NR_105009 LINC01335 - long intergenic non-protein coding RNA 1335 ncRNA 13-PTNLD9-TUMOR_peak_15465 chr14 32350208 32350330 + 9.09697 NA Intergenic Intergenic 166494 NM_001201574 80224 Hs.288981 NM_025152 HPRD:16600 NUBPL C14orf127|IND1|huInd1 nucleotide binding protein-like protein-coding 13-PTNLD9-TUMOR_peak_10471 chr11 69927046 69927204 + 9.09697 NA intron (NM_018043, intron 1 of 25) intron (NM_018043, intron 1 of 25) 2717 NM_018043 55107 Hs.503074 NM_018043 HPRD:18202 ANO1 DOG1|ORAOV2|TAOS2|TMEM16A anoctamin 1, calcium activated chloride channel protein-coding 13-PTNLD9-TUMOR_peak_22799 chr18 21792967 21793136 + 9.09697 NA intron (NM_018030, intron 3 of 13) intron (NM_018030, intron 3 of 13) 59145 NM_018030 114876 Hs.370725 NM_018030 HPRD:09472 OSBPL1A ORP-1|ORP1|OSBPL1B oxysterol binding protein-like 1A protein-coding 13-PTNLD9-TUMOR_peak_29275 chr2 183237511 183237612 + 9.09697 NA intron (NM_001003683, intron 2 of 14) intron (NM_001003683, intron 2 of 14) 54214 NM_001258313 5136 Hs.191046 NM_005019 HPRD:01387 PDE1A CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A, calmodulin-dependent protein-coding 13-PTNLD9-TUMOR_peak_599 chr1 20451100 20451259 + 9.09697 NA Intergenic Intergenic -5120 NM_001271814 26279 Hs.189507 NM_012400 PLA2G2D PLA2IID|SPLASH|sPLA2-IID|sPLA2S phospholipase A2, group IID protein-coding 13-PTNLD9-TUMOR_peak_10764 chr11 79381961 79382107 + 9.09697 NA Intergenic L2b|LINE|L2 -230339 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ODZ4|TNM4|Ten-M4 teneurin transmembrane protein 4 protein-coding 13-PTNLD9-TUMOR_peak_40467 chr5 18746237 18746374 + 9.09697 NA Intergenic LTR12F|LTR|ERV1 1140076 NM_001291957 1016 Hs.317632 NM_004934 HPRD:04314 CDH18 CDH14|CDH14L|CDH24 cadherin 18, type 2 protein-coding 13-PTNLD9-TUMOR_peak_18925 chr16 29354366 29354538 + 9.09697 NA intron (NR_002939, intron 5 of 8) L2|LINE|L2 40844 NR_002939 440352 Hs.658149 NR_002939 SNX29P2 RUNDC2C sorting nexin 29 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_56478 chrX 129299737 129300015 + 9.09697 NA promoter-TSS (NM_001130847) promoter-TSS (NM_001130847) -15 NM_001130847 9131 Hs.424932 NM_004208 HPRD:02161 AIFM1 AIF|CMT2D|CMTX4|COWCK|COXPD6|NADMR|NAMSD|PDCD8 apoptosis-inducing factor, mitochondrion-associated, 1 protein-coding 13-PTNLD9-TUMOR_peak_7820 chr10 79471273 79471454 + 9.09697 NA Intergenic CpG -73786 NM_001271522 3778 Hs.144795 NM_002247 HPRD:15967 KCNMA1 BKTM|KCa1.1|MaxiK|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|mSLO1 potassium large conductance calcium-activated channel, subfamily M, alpha member 1 protein-coding 13-PTNLD9-TUMOR_peak_45437 chr6 65230101 65230215 + 9.09697 NA intron (NM_001292009, intron 26 of 43) LTR78|LTR|ERV1 -781153 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 13-PTNLD9-TUMOR_peak_46422 chr6 158969538 158969753 + 9.09697 NA intron (NM_020823, intron 1 of 16) intron (NM_020823, intron 1 of 16) 12177 NM_020823 57583 Hs.99145 NM_020823 ENSG00000146433 TMEM181 GPR178|KIAA1423 transmembrane protein 181 protein-coding 13-PTNLD9-TUMOR_peak_52948 chr9 26809961 26810071 + 9.09697 NA Intergenic MLT1F2|LTR|ERVL-MaLR 82810 NM_024828 79886 Hs.178357 NM_024828 HPRD:12981 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 13-PTNLD9-TUMOR_peak_17531 chr15 69438330 69438487 + 9.09697 NA intron (NR_031680, intron 3 of 4) intron (NR_031680, intron 3 of 4) -14565 NM_015554 26035 Hs.183006 NM_015554 HPRD:07020 GLCE HSEPI glucuronic acid epimerase protein-coding 13-PTNLD9-TUMOR_peak_35868 chr3 129502507 129502628 + 9.09697 NA intron (NM_001017395, intron 3 of 5) MIRc|SINE|MIR -94992 NR_033361 23023 Hs.477547 NM_015008 HPRD:15518 TMCC1 - transmembrane and coiled-coil domain family 1 protein-coding 13-PTNLD9-TUMOR_peak_30371 chr20 6863713 6863862 + 9.09697 NA Intergenic Intergenic 115042 NM_001200 650 Hs.73853 NM_001200 HPRD:00206 BMP2 BDA2|BMP2A bone morphogenetic protein 2 protein-coding 13-PTNLD9-TUMOR_peak_34302 chr3 39680918 39681098 + 9.09697 NA Intergenic Intergenic 137451 NM_001278323 4336 Hs.121333 NM_182935 HPRD:02973 MOBP - myelin-associated oligodendrocyte basic protein protein-coding 13-PTNLD9-TUMOR_peak_14240 chr12 125288672 125289042 + 9.09697 NA intron (NM_001082959, intron 7 of 11) MLT1K|LTR|ERVL-MaLR 59662 NM_005505 949 Hs.731377 NM_005505 HPRD:03024 SCARB1 CD36L1|CLA-1|CLA1|HDLQTL6|SR-BI|SRB1 scavenger receptor class B, member 1 protein-coding 13-PTNLD9-TUMOR_peak_41333 chr5 75817273 75817407 + 9.09697 NA intron (NM_006633, intron 2 of 35) intron (NM_006633, intron 2 of 35) -25894 NM_001285460 10788 Hs.291030 NM_006633 HPRD:09253 IQGAP2 - IQ motif containing GTPase activating protein 2 protein-coding 13-PTNLD9-TUMOR_peak_4339 chr1 168445924 168446153 + 9.09697 NA Intergenic L2a|LINE|L2 -54144 NR_037851 100505918 Hs.568494 NR_037851 LOC100505918 - uncharacterized LOC100505918 ncRNA 13-PTNLD9-TUMOR_peak_9974 chr11 60789207 60789311 + 9.09697 NA Intergenic Intergenic 50146 NM_001254750 923 Hs.744366 NM_006725 HPRD:01724 CD6 TP120 CD6 molecule protein-coding 13-PTNLD9-TUMOR_peak_41024 chr5 61213056 61213293 + 9.09697 NA Intergenic Intergenic -181649 NR_105000 100506526 Hs.662277 NR_105000 ENSG00000251575 LOC100506526 - uncharacterized LOC100506526 ncRNA 13-PTNLD9-TUMOR_peak_16517 chr14 96719601 96719753 + 9.09697 NA Intergenic Intergenic -2870 NM_000710 623 Hs.525572 NM_000710 HPRD:02639 BDKRB1 B1BKR|B1R|BDKRB2|BKB1R|BKR1|BRADYB1 bradykinin receptor B1 protein-coding 13-PTNLD9-TUMOR_peak_27479 chr2 86645243 86645338 + 9.09697 NA Intergenic LTR33|LTR|ERVL -22981 NM_018433 55818 Hs.557425 NM_018433 HPRD:11054 KDM3A JHDM2A|JHMD2A|JMJD1|JMJD1A|TSGA lysine (K)-specific demethylase 3A protein-coding 13-PTNLD9-TUMOR_peak_39692 chr4 154485793 154485977 + 9.09697 NA intron (NM_015196, intron 7 of 34) intron (NM_015196, intron 7 of 34) 98387 NM_015196 23240 Hs.732450 NM_015196 HPRD:13823 KIAA0922 TMEM131L KIAA0922 protein-coding 13-PTNLD9-TUMOR_peak_50118 chr8 12584123 12584290 + 9.09697 NA promoter-TSS (NR_037495) promoter-TSS (NR_037495) -540 NR_037495 100500838 NR_037495 MIR3926-2 - microRNA 3926-2 ncRNA 13-PTNLD9-TUMOR_peak_12119 chr12 10574931 10575082 + 9.09697 NA Intergenic Intergenic -1812 NM_002261 3823 Hs.654362 NM_002261 HPRD:04203 KLRC3 NKG2-E|NKG2E killer cell lectin-like receptor subfamily C, member 3 protein-coding 13-PTNLD9-TUMOR_peak_6037 chr1 238822190 238822351 + 9.09697 NA Intergenic Intergenic -172953 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 - long intergenic non-protein coding RNA 1139 ncRNA 13-PTNLD9-TUMOR_peak_42435 chr5 142362151 142362319 + 9.09697 NA intron (NM_015071, intron 11 of 22) intron (NM_015071, intron 11 of 22) -113760 NR_046680 100874239 Hs.570896 NR_046680 ENSG00000226272 ARHGAP26-AS1 - ARHGAP26 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_29513 chr2 201480121 201480222 + 9.09697 NA intron (NM_001159, intron 15 of 34) intron (NM_001159, intron 15 of 34) 29440 NM_001159 316 Hs.406238 NM_001159 HPRD:07537 AOX1 AO|AOH1 aldehyde oxidase 1 protein-coding 13-PTNLD9-TUMOR_peak_21419 chr17 48029969 48030086 + 9.09697 NA Intergenic Intergenic -16535 NM_138281 1748 Hs.591167 NM_001934 HPRD:03553 DLX4 BP1|DLX7|DLX8|DLX9 distal-less homeobox 4 protein-coding 13-PTNLD9-TUMOR_peak_27886 chr2 102972150 102972327 + 9.09697 NA promoter-TSS (NM_003855) promoter-TSS (NM_003855) -505 NM_001282399 8809 Hs.469521 NM_003855 HPRD:05138 IL18R1 CD218a|CDw218a|IL-1Rrp|IL18RA|IL1RRP interleukin 18 receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_45369 chr6 55731053 55731179 + 9.09697 NA intron (NM_021073, intron 1 of 6) intron (NM_021073, intron 1 of 6) 9259 NM_021073 653 Hs.296648 NM_021073 HPRD:00210 BMP5 - bone morphogenetic protein 5 protein-coding 13-PTNLD9-TUMOR_peak_43945 chr6 16345809 16346044 + 9.09697 NA intron (NM_001128164, intron 6 of 7) intron (NM_001128164, intron 6 of 7) 107115 NM_006877 2766 Hs.484741 NM_006877 HPRD:00754 GMPR GMPR1 guanosine monophosphate reductase protein-coding 13-PTNLD9-TUMOR_peak_808 chr1 27481448 27481807 + 9.09697 NA promoter-TSS (NR_046474) promoter-TSS (NR_046474) -6 NM_003047 6548 Hs.91389 NM_003047 HPRD:00123 SLC9A1 APNH|NHE-1|NHE1|PPP1R143 solute carrier family 9, subfamily A (NHE1, cation proton antiporter 1), member 1 protein-coding 13-PTNLD9-TUMOR_peak_11468 chr11 122652252 122652356 + 9.09697 NA intron (NM_032873, intron 4 of 13) intron (NM_032873, intron 4 of 13) -56951 NM_019604 56253 Hs.159523 NM_019604 HPRD:16760 CRTAM CD355 cytotoxic and regulatory T cell molecule protein-coding 13-PTNLD9-TUMOR_peak_17845 chr15 83992208 83992401 + 9.09697 NA Intergenic Intergenic -38836 NM_001717 646 Hs.459153 NM_001717 HPRD:11799 BNC1 BNC|BSN1|HsT19447 basonuclin 1 protein-coding 13-PTNLD9-TUMOR_peak_9060 chr11 11417966 11418130 + 9.09697 NA intron (NM_198516, intron 3 of 10) L3|LINE|CR1 -43144 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2, alpha 3 polypeptide protein-coding 13-PTNLD9-TUMOR_peak_17929 chr15 88928432 88928577 + 9.09697 NA Intergenic L2|LINE|L2 82129 NM_022163 26589 Hs.534261 NM_022163 HPRD:14765 MRPL46 C15orf4|LIECG2|P2ECSL mitochondrial ribosomal protein L46 protein-coding 13-PTNLD9-TUMOR_peak_15765 chr14 52792003 52792150 + 9.09697 NA intron (NM_000956, intron 1 of 1) intron (NM_000956, intron 1 of 1) 11060 NM_000956 5732 Hs.2090 NM_000956 HPRD:08905 PTGER2 EP2 prostaglandin E receptor 2 (subtype EP2), 53kDa protein-coding 13-PTNLD9-TUMOR_peak_7365 chr10 51978198 51978357 + 9.09697 NA exon (NM_019893, exon 7 of 20) exon (NM_019893, exon 7 of 20) 30093 NM_019893 56624 Hs.512645 NM_019893 ENSG00000188611 ASAH2 BCDase|HNAC1|LCDase|N-CDase|NCDase N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2 protein-coding 13-PTNLD9-TUMOR_peak_26908 chr2 50201318 50201452 + 9.09697 NA intron (NM_001135659, intron 22 of 23) intron (NM_001135659, intron 22 of 23) 373509 NM_138735 9378 Hs.637685 NM_004801 HPRD:11858 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 13-PTNLD9-TUMOR_peak_14425 chr13 23958377 23958510 + 9.09697 NA intron (NM_014363, intron 2 of 9) intron (NM_014363, intron 2 of 9) -8761 NM_001278055 26278 Hs.159492 NM_014363 HPRD:05135 SACS ARSACS|DNAJC29|PPP1R138|SPAX6 sacsin molecular chaperone protein-coding 13-PTNLD9-TUMOR_peak_54329 chr9 109715519 109715724 + 9.09697 NA intron (NR_031752, intron 1 of 3) L2|LINE|L2 90243 NM_021224 58499 Hs.370379 NM_021224 HPRD:10333 ZNF462 Zfp462 zinc finger protein 462 protein-coding 13-PTNLD9-TUMOR_peak_46146 chr6 138814658 138814871 + 9.09697 NA intron (NM_020464, intron 2 of 6) intron (NM_020464, intron 2 of 6) 5815 NM_001144060 57224 Hs.652741 NM_020464 ENSG00000135540 NHSL1 C6orf63 NHS-like 1 protein-coding 13-PTNLD9-TUMOR_peak_14476 chr13 27936248 27936344 + 9.09697 NA Intergenic Intergenic -62385 NM_002097 2971 Hs.445977 NM_002097 HPRD:02916 GTF3A AP2|TFIIIA general transcription factor IIIA protein-coding 13-PTNLD9-TUMOR_peak_27321 chr2 74928218 74928383 + 9.09697 NA Intergenic Intergenic 46945 NR_073398 10505 Hs.25887 NM_004263 SEMA4F M-SEMA|PRO2353|S4F|SEMAM|SEMAW|m-Sema-M sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4F protein-coding 13-PTNLD9-TUMOR_peak_30287 chr20 2264785 2264906 + 9.09697 NA Intergenic AluJr|SINE|Alu -11768 NM_003245 7053 Hs.2022 NM_003245 HPRD:02584 TGM3 TGE transglutaminase 3 protein-coding 13-PTNLD9-TUMOR_peak_52859 chr9 19631331 19631487 + 9.09697 NA intron (NM_020344, intron 1 of 9) intron (NM_020344, intron 1 of 9) 155608 NM_001193288 25769 Hs.283014 NM_020344 HPRD:15351 SLC24A2 NCKX2 solute carrier family 24 (sodium/potassium/calcium exchanger), member 2 protein-coding 13-PTNLD9-TUMOR_peak_19359 chr16 53826262 53826407 + 9.09697 NA intron (NM_001080432, intron 1 of 8) intron (NM_001080432, intron 1 of 8) 88459 NM_001080432 79068 Hs.528833 NM_001080432 FTO ALKBH9 fat mass and obesity associated protein-coding 13-PTNLD9-TUMOR_peak_55527 chrX 10851670 10851885 + 9.09697 NA promoter-TSS (NM_033290) promoter-TSS (NM_033290) 32 NM_033290 4281 Hs.27695 NM_000381 HPRD:02047 MID1 BBBG1|FXY|GBBB1|MIDIN|OGS1|OS|OSX|RNF59|TRIM18|XPRF|ZNFXY midline 1 protein-coding 13-PTNLD9-TUMOR_peak_25179 chr19 46636609 46636874 + 9.09697 NA Intergenic LTR10C|LTR|ERV1 -8810 NM_207393 388555 Hs.365496 NM_207393 HPRD:17140 IGFL3 UNQ483 IGF-like family member 3 protein-coding 13-PTNLD9-TUMOR_peak_21528 chr17 53140405 53140524 + 9.09697 NA intron (NM_178509, intron 12 of 17) intron (NM_178509, intron 12 of 17) 94338 NM_178509 252983 Hs.35199 NM_178509 HPRD:18127 STXBP4 Synip syntaxin binding protein 4 protein-coding 13-PTNLD9-TUMOR_peak_21887 chr17 69409048 69409263 + 9.09697 NA Intergenic Intergenic -210835 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility candidate 17 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_46095 chr6 134943098 134943314 + 9.09697 NA Intergenic Intergenic 183678 NR_038218 154092 Hs.223718 NR_038216 LINC01010 - long intergenic non-protein coding RNA 1010 ncRNA 13-PTNLD9-TUMOR_peak_27814 chr2 100175678 100175782 + 9.09697 NA intron (NM_001025108, intron 20 of 23) intron (NM_001025108, intron 20 of 23) -69250 NM_001037872 51455 Hs.443077 NM_016316 HPRD:16202 REV1 REV1L REV1, polymerase (DNA directed) protein-coding 13-PTNLD9-TUMOR_peak_50589 chr8 33448590 33448687 + 9.09697 NA TTS (NM_024025) TTS (NM_024025) 8801 NM_024025 78986 Hs.8719 NM_024025 HPRD:14421 DUSP26 DUSP24|LDP-4|MKP8|NATA1|SKRP3 dual specificity phosphatase 26 (putative) protein-coding 13-PTNLD9-TUMOR_peak_31248 chr20 45087856 45088002 + 9.09697 NA Intergenic Intergenic -1647 NR_045983 100130934 Hs.712133 NM_173643 ZNF663P ZNF663 zinc finger protein 663, pseudogene pseudo 13-PTNLD9-TUMOR_peak_7866 chr10 81444995 81445091 + 9.09697 NA non-coding (NR_027512, exon 1 of 1) non-coding (NR_027512, exon 1 of 1) 2312 NR_027512 650623 Hs.730022 NR_027512 BEND3P3 - BEN domain containing 3 pseudogene 3 pseudo 13-PTNLD9-TUMOR_peak_30323 chr20 3776640 3776976 + 9.09697 NA 5' UTR (NM_021873, exon 1 of 16) 5' UTR (NM_021873, exon 1 of 16) 422 NM_021872 994 Hs.153752 NM_004358 HPRD:00307 CDC25B - cell division cycle 25B protein-coding 13-PTNLD9-TUMOR_peak_34718 chr3 56358187 56358350 + 9.09697 NA intron (NM_015576, intron 2 of 16) intron (NM_015576, intron 2 of 16) 144123 NM_015576 26059 Hs.476389 NM_015576 HPRD:10810 ERC2 CAST|CAST1|ELKSL|SPBC110|Spc110 ELKS/RAB6-interacting/CAST family member 2 protein-coding 13-PTNLD9-TUMOR_peak_27246 chr2 71679883 71680028 + 9.09697 NA promoter-TSS (NM_001130981) promoter-TSS (NM_001130981) -798 NM_001130981 8291 Hs.252180 NM_003494 HPRD:04307 DYSF FER1L1|LGMD2B|MMD1 dysferlin protein-coding 13-PTNLD9-TUMOR_peak_50881 chr8 48664671 48664790 + 9.09697 NA Intergenic L1P2|LINE|L1 -14004 NM_005195 1052 Hs.440829 NM_005195 CEBPD C/EBP-delta|CELF|CRP3|NF-IL6-beta CCAAT/enhancer binding protein (C/EBP), delta protein-coding 13-PTNLD9-TUMOR_peak_34237 chr3 36102487 36102677 + 9.09697 NA Intergenic Intergenic 316614 NR_029824 406916 NR_029824 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128b microRNA 128-2 ncRNA 13-PTNLD9-TUMOR_peak_14076 chr12 121484417 121484559 + 9.09697 NA Intergenic MLT1H|LTR|ERVL-MaLR -7443 NM_198213 8638 Hs.118633 NM_003733 HPRD:04473 OASL OASLd|TRIP-14|TRIP14|p59 OASL|p59-OASL|p59OASL 2'-5'-oligoadenylate synthetase-like protein-coding 13-PTNLD9-TUMOR_peak_14581 chr13 34511993 34512165 + 9.09697 NA intron (NM_181558, intron 8 of 8) intron (NM_181558, intron 8 of 8) 119873 NM_181558 5983 Hs.115474 NM_002915 HPRD:02676 RFC3 RFC38 replication factor C (activator 1) 3, 38kDa protein-coding 13-PTNLD9-TUMOR_peak_28116 chr2 113569713 113569844 + 9.09697 NA Intergenic (CAG)n|Simple_repeat|Simple_repeat 24578 NM_000576 3553 Hs.126256 NM_000576 HPRD:00985 IL1B IL-1|IL1-BETA|IL1F2 interleukin 1, beta protein-coding 13-PTNLD9-TUMOR_peak_46116 chr6 136965386 136965535 + 9.09697 NA intron (NM_005923, intron 11 of 29) intron (NM_005923, intron 11 of 29) -93503 NM_003980 9053 Hs.486548 NM_003980 HPRD:04982 MAP7 E-MAP-115|EMAP115 microtubule-associated protein 7 protein-coding 13-PTNLD9-TUMOR_peak_28741 chr2 152719305 152719413 + 9.09697 NA intron (NM_001005746, intron 9 of 13) MIR3|SINE|MIR -34350 NM_012097 26225 Hs.470233 NM_012097 ARL5A ARFLP5|ARL5 ADP-ribosylation factor-like 5A protein-coding 13-PTNLD9-TUMOR_peak_7880 chr10 82048704 82048885 + 9.09697 NA intron (NM_000429, intron 1 of 8) L1MA6|LINE|L1 640 NM_000429 4143 Hs.282670 NM_000429 HPRD:02013 MAT1A MAT|MATA1|SAMS|SAMS1 methionine adenosyltransferase I, alpha protein-coding 13-PTNLD9-TUMOR_peak_8091 chr10 98783964 98784126 + 9.09697 NA intron (NM_003061, intron 25 of 36) intron (NM_003061, intron 25 of 36) 43004 NM_015652 26148 Hs.14555 NM_015652 HPRD:12563 C10orf12 - chromosome 10 open reading frame 12 protein-coding 13-PTNLD9-TUMOR_peak_55572 chrX 15637640 15637747 + 9.09697 NA Intergenic Intergenic -17501 NM_021804 59272 Hs.178098 NM_021804 HPRD:02274 ACE2 ACEH angiotensin I converting enzyme 2 protein-coding 13-PTNLD9-TUMOR_peak_26169 chr2 12824651 12824930 + 9.09697 NA Intergenic Intergenic -32208 NR_027303 28951 Hs.467751 NM_021643 HPRD:18224 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 13-PTNLD9-TUMOR_peak_5643 chr1 226384776 226384903 + 9.09697 NA Intergenic Intergenic -10416 NM_022735 64746 Hs.520207 NM_022735 HPRD:08432 ACBD3 GCP60|GOCAP1|GOLPH1|PAP7 acyl-CoA binding domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_54323 chr9 109480125 109480233 + 9.09697 NA Intergenic Intergenic 101840 NR_104145 100996590 Hs.147110 NR_104145 ENSG00000234229 LINC01505 - long intergenic non-protein coding RNA 1505 ncRNA 13-PTNLD9-TUMOR_peak_8417 chr10 118927760 118927880 + 9.09697 NA promoter-TSS (NR_037436) promoter-TSS (NR_037436) -535 NR_037436 100500893 NR_037436 miRBase:MI0016064 MIR3663 - microRNA 3663 ncRNA 13-PTNLD9-TUMOR_peak_48874 chr7 117306224 117306419 + 9.09697 NA intron (NM_000492, intron 26 of 26) intron (NM_000492, intron 26 of 26) 186304 NM_000492 1080 Hs.489786 NM_000492 HPRD:03883 CFTR ABC35|ABCC7|CF|CFTR/MRP|MRP7|TNR-CFTR|dJ760C5.1 cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7) protein-coding 13-PTNLD9-TUMOR_peak_46511 chr6 166680054 166680156 + 9.09697 NA Intergenic AluSq2|SINE|Alu 41766 NM_175922 285800 Hs.731862 NM_175922 HPRD:17533 PRR18 - proline rich 18 protein-coding 13-PTNLD9-TUMOR_peak_27163 chr2 68978987 68979110 + 9.09697 NA intron (NM_001007231, intron 1 of 10) intron (NM_001007231, intron 1 of 10) 17135 NM_001166277 9938 Hs.531807 NM_014882 HPRD:09805 ARHGAP25 HEL-S-308|KAIA0053 Rho GTPase activating protein 25 protein-coding 13-PTNLD9-TUMOR_peak_38034 chr4 15915330 15915566 + 9.09697 NA Intergenic Intergenic 24915 NM_005130 9982 Hs.1690 NM_005130 HPRD:06371 FGFBP1 FGF-BP|FGF-BP1|FGFBP|FGFBP-1|HBP17 fibroblast growth factor binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_29984 chr2 231337534 231337633 + 9.09697 NA intron (NM_001080391, intron 15 of 28) L2|LINE|L2 56112 NM_001206704 6672 Hs.369056 NM_003113 HPRD:06844 SP100 lysp100b SP100 nuclear antigen protein-coding 13-PTNLD9-TUMOR_peak_16391 chr14 87265565 87265861 + 9.09697 NA Intergenic Intergenic -106409 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LOC283585 - uncharacterized LOC283585 ncRNA 13-PTNLD9-TUMOR_peak_27276 chr2 73471294 73471452 + 9.09697 NA intron (NM_001166284, intron 3 of 9) intron (NM_001166284, intron 3 of 9) 10009 NM_006429 10574 Hs.368149 NM_006429 HPRD:06896 CCT7 CCTETA|CCTH|NIP7-1|TCP1ETA chaperonin containing TCP1, subunit 7 (eta) protein-coding 13-PTNLD9-TUMOR_peak_5078 chr1 203377779 203377894 + 9.09697 NA Intergenic Intergenic -57279 NR_103757 2331 Hs.519168 NM_002023 HPRD:02591 FMOD FM|SLRR2E fibromodulin protein-coding 13-PTNLD9-TUMOR_peak_54916 chr9 132900502 132900688 + 9.09697 NA 3' UTR (NM_001136558, exon 19 of 19) 3' UTR (NM_001136558, exon 19 of 19) -34262 NM_014286 23413 Hs.642946 NM_014286 HPRD:04500 NCS1 FLUP|FREQ neuronal calcium sensor 1 protein-coding 13-PTNLD9-TUMOR_peak_7816 chr10 79324591 79324814 + 9.09697 NA intron (NM_001271519, intron 1 of 28) intron (NM_001271519, intron 1 of 28) 72875 NM_001271520 3778 Hs.144795 NM_002247 HPRD:15967 KCNMA1 BKTM|KCa1.1|MaxiK|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|mSLO1 potassium large conductance calcium-activated channel, subfamily M, alpha member 1 protein-coding 13-PTNLD9-TUMOR_peak_2982 chr1 116314313 116314732 + 9.09697 NA Intergenic Intergenic -3096 NM_001232 845 Hs.57975 NM_001232 HPRD:00256 CASQ2 PDIB2 calsequestrin 2 (cardiac muscle) protein-coding 13-PTNLD9-TUMOR_peak_13016 chr12 56920526 56920673 + 9.09697 NA intron (NM_002898, intron 1 of 13) intron (NM_002898, intron 1 of 13) 4990 NM_002898 5939 Hs.505729 NM_002898 RBMS2 SCR3 RNA binding motif, single stranded interacting protein 2 protein-coding 13-PTNLD9-TUMOR_peak_1622 chr1 46805760 46805899 + 9.09697 NA promoter-TSS (NR_045790) promoter-TSS (NR_045790) -20 NR_045789 387338 Hs.163424 NM_199044 NSUN4 SHTAP NOP2/Sun domain family, member 4 protein-coding 13-PTNLD9-TUMOR_peak_11409 chr11 119469452 119469584 + 9.09697 NA Intergenic MIR|SINE|MIR 129917 NM_203286 5818 Hs.334846 NM_002855 HPRD:07200 PVRL1 CD111|CLPED1|ED4|HIgR|HV1S|HVEC|OFC7|PRR|PRR1|PVRR|PVRR1|SK-12|nectin-1 poliovirus receptor-related 1 (herpesvirus entry mediator C) protein-coding 13-PTNLD9-TUMOR_peak_24779 chr19 36207766 36208118 + 9.09697 NA promoter-TSS (NM_014727) promoter-TSS (NM_014727) -979 NM_014727 9757 Hs.92236 NM_014727 HPRD:06017 KMT2B HRX2|MLL1B|MLL2|MLL4|TRX2|WBP-7|WBP7 lysine (K)-specific methyltransferase 2B protein-coding 13-PTNLD9-TUMOR_peak_780 chr1 26947970 26948094 + 9.09697 NA Intergenic CpG 66999 NR_031740 100302190 NR_031740 MIR1976 hsa-mir-1976 microRNA 1976 ncRNA 13-PTNLD9-TUMOR_peak_45482 chr6 72253802 72254021 + 9.09697 NA Intergenic Intergenic 123181 NR_121615 102724000 Hs.145785 NR_121615 LOC102724000 - uncharacterized LOC102724000 ncRNA 13-PTNLD9-TUMOR_peak_45884 chr6 110299876 110300004 + 9.09697 NA 5' UTR (NM_001286099, exon 2 of 3) 5' UTR (NM_001286099, exon 2 of 3) 481 NM_001286099 2830 Hs.46332 NM_005284 HPRD:02775 GPR6 - G protein-coupled receptor 6 protein-coding 13-PTNLD9-TUMOR_peak_39659 chr4 153247094 153247224 + 9.09697 NA exon (NM_001013415, exon 9 of 11) exon (NM_001013415, exon 9 of 11) -11648 NR_104273 102191832 Hs.712524 NR_104273 ENSG00000270751 DEAR DEspR dual endothelin-1(VEGFsp)/angiotensin II receptor pseudogene pseudo 13-PTNLD9-TUMOR_peak_18039 chr15 98418835 98418987 + 9.09697 NA Intergenic LTR12D|LTR|ERV1 -1252 NR_024173 91948 Hs.130423 NR_024172 ENSG00000251209 LINC00923 - long intergenic non-protein coding RNA 923 ncRNA 13-PTNLD9-TUMOR_peak_55628 chrX 20760367 20760481 + 9.09697 NA Intergenic Intergenic -475674 NM_004586 6197 Hs.445387 NM_004586 HPRD:02092 RPS6KA3 CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2 ribosomal protein S6 kinase, 90kDa, polypeptide 3 protein-coding 13-PTNLD9-TUMOR_peak_55684 chrX 30302042 30302150 + 9.09697 NA Intergenic MamGypLTR1a|LTR|Gypsy 25399 NM_000475 190 Hs.268490 NM_000475 NR0B1 AHC|AHCH|AHX|DAX-1|DAX1|DSS|GTD|HHG|NROB1|SRXY2 nuclear receptor subfamily 0, group B, member 1 protein-coding 13-PTNLD9-TUMOR_peak_54412 chr9 112609210 112609353 + 9.09697 NA intron (NM_001037293, intron 2 of 6) intron (NM_001037293, intron 2 of 6) 66704 NM_007203 445815 Hs.591908 NM_007203 HPRD:09197 PALM2-AKAP2 AKAP2 PALM2-AKAP2 readthrough protein-coding 13-PTNLD9-TUMOR_peak_55774 chrX 46515223 46515349 + 9.09697 NA intron (NM_032591, intron 7 of 16) L1PA3|LINE|L1 82164 NM_019886 56548 Hs.129955 NM_019886 HPRD:02302 CHST7 C6ST-2|GST-5 carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 7 protein-coding 13-PTNLD9-TUMOR_peak_52805 chr9 16321859 16322008 + 9.09697 NA Intergenic Intergenic -45622 NR_073471 100129385 Hs.586441 NM_001271829 ENSG00000205549 C9orf92 Em:AL513424.1 chromosome 9 open reading frame 92 protein-coding 13-PTNLD9-TUMOR_peak_38531 chr4 67657480 67657752 + 9.09697 NA Intergenic L1MCb|LINE|L1 630102 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 13-PTNLD9-TUMOR_peak_50959 chr8 55181571 55181697 + 9.09697 NA Intergenic Intergenic 133853 NM_014175 29088 Hs.18349 NM_014175 MRPL15 L15mt|MRP-L15|MRP-L7|RPML7 mitochondrial ribosomal protein L15 protein-coding 13-PTNLD9-TUMOR_peak_34918 chr3 69355654 69355752 + 9.09697 NA intron (NM_015123, intron 3 of 22) intron (NM_015123, intron 3 of 22) 79752 NM_015123 23150 Hs.371681 NM_015123 ENSG00000114541 FRMD4B 6030440G05Rik|GRSP1 FERM domain containing 4B protein-coding 13-PTNLD9-TUMOR_peak_39124 chr4 114880429 114880639 + 9.09697 NA intron (NM_024590, intron 1 of 1) intron (NM_024590, intron 1 of 1) 20344 NM_024590 79642 Hs.22895 NM_024590 HPRD:08034 ARSJ - arylsulfatase family, member J protein-coding 13-PTNLD9-TUMOR_peak_30143 chr2 239593223 239593377 + 9.09697 NA Intergenic Intergenic -129160 NR_037809 151171 Hs.652076 NR_037809 ENSG00000225493 LINC01107 - long intergenic non-protein coding RNA 1107 ncRNA 13-PTNLD9-TUMOR_peak_34260 chr3 37263015 37263184 + 9.09697 NA Intergenic Intergenic -21583 NM_002078 2803 Hs.344151 NM_002078 HPRD:03941 GOLGA4 GCP2|GOLG|MU-RMS-40.18|p230 golgin A4 protein-coding 13-PTNLD9-TUMOR_peak_50540 chr8 30524831 30524946 + 9.09697 NA Intergenic AluSx|SINE|Alu -9150 NM_002095 2961 Hs.77100 NM_002095 HPRD:01800 GTF2E2 FE|TF2E2|TFIIE-B general transcription factor IIE, polypeptide 2, beta 34kDa protein-coding 13-PTNLD9-TUMOR_peak_53610 chr9 74340968 74341167 + 9.09697 NA intron (NM_013390, intron 10 of 23) intron (NM_013390, intron 10 of 23) 42733 NM_013390 23670 Hs.494146 NM_013390 HPRD:09317 TMEM2 - transmembrane protein 2 protein-coding 13-PTNLD9-TUMOR_peak_1918 chr1 57597469 57597683 + 9.09697 NA intron (NM_021080, intron 6 of 16) L2a|LINE|L2 -165763 NM_001278544 732 Hs.391835 NM_000066 HPRD:00410 C8B C82 complement component 8, beta polypeptide protein-coding 13-PTNLD9-TUMOR_peak_54977 chr9 136196318 136196412 + 9.09697 NA Intergenic LTR13|LTR|ERVK 6682 NM_001278942 6838 Hs.274430 NM_006753 HPRD:01714 SURF6 RRP14 surfeit 6 protein-coding 13-PTNLD9-TUMOR_peak_47271 chr7 39579207 39579321 + 9.09697 NA Intergenic L2c|LINE|L2 -26711 NM_020192 57002 Hs.72168 NM_020192 HPRD:16669 YAE1D1 C7orf36 Yae1 domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_30414 chr20 10829594 10829930 + 9.09697 NA Intergenic Intergenic 60158 NR_109866 101929413 Hs.385604 NR_109866 ENSG00000232900 LOC101929413 - uncharacterized LOC101929413 ncRNA 13-PTNLD9-TUMOR_peak_8165 chr10 101989327 101989452 + 9.09697 NA promoter-TSS (NM_001278) promoter-TSS (NM_001278) -45 NM_001278 1147 Hs.198998 NM_001278 HPRD:02811 CHUK IKBKA|IKK-alpha|IKK1|IKKA|NFKBIKA|TCF16 conserved helix-loop-helix ubiquitous kinase protein-coding 13-PTNLD9-TUMOR_peak_8526 chr10 125137472 125137623 + 9.09697 NA Intergenic Intergenic 223787 NM_004725 9184 Hs.418533 NM_004725 HPRD:04761 BUB3 BUB3L|hBUB3 BUB3 mitotic checkpoint protein protein-coding 13-PTNLD9-TUMOR_peak_34961 chr3 72397222 72397358 + 9.09697 NA Intergenic Intergenic 98484 NM_012234 23429 Hs.7910 NM_012234 RYBP AAP1|DEDAF|YEAF1 RING1 and YY1 binding protein protein-coding 13-PTNLD9-TUMOR_peak_54748 chr9 126840353 126840483 + 9.09697 NA Intergenic L2b|LINE|L2 66529 NM_004789 9355 Hs.696425 NM_004789 HPRD:04786 LHX2 LH2|hLhx2 LIM homeobox 2 protein-coding 13-PTNLD9-TUMOR_peak_32735 chr22 19556257 19556403 + 9.09697 NA Intergenic L2a|LINE|L2 -1968 NR_024381 150185 Hs.719752 NR_024381 LINC00895 - long intergenic non-protein coding RNA 895 ncRNA 13-PTNLD9-TUMOR_peak_10046 chr11 61976032 61976248 + 9.09697 NA promoter-TSS (NM_002407) promoter-TSS (NM_002407) 0 NM_002407 4246 Hs.97644 NM_002407 HPRD:05096 SCGB2A1 LPHC|LPNC|MGB2|UGB3 secretoglobin, family 2A, member 1 protein-coding 13-PTNLD9-TUMOR_peak_47143 chr7 29132869 29132978 + 9.09697 NA intron (NM_031311, intron 5 of 12) AluSx1|SINE|Alu -31726 NR_120523 101928168 Hs.666750 NR_120523 LOC101928168 - uncharacterized LOC101928168 ncRNA 13-PTNLD9-TUMOR_peak_46525 chr6 167104792 167104948 + 9.09697 NA intron (NM_001006932, intron 2 of 21) intron (NM_001006932, intron 2 of 21) -64144 NM_021135 6196 Hs.655277 NM_021135 HPRD:03403 RPS6KA2 HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|pp90RSK3 ribosomal protein S6 kinase, 90kDa, polypeptide 2 protein-coding 13-PTNLD9-TUMOR_peak_22514 chr18 7177275 7177370 + 9.09697 NA Intergenic Intergenic -53815 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 13-PTNLD9-TUMOR_peak_32063 chr21 29663945 29664181 + 9.09697 NA Intergenic MLT1C|LTR|ERVL-MaLR -247577 NR_026553 118421 Hs.438549 NR_026552 HPRD:10733 LINC00161 C21orf100|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 13-PTNLD9-TUMOR_peak_50360 chr8 23619181 23619306 + 9.09697 NA Intergenic Intergenic -55132 NM_001136271 137814 Hs.532654 NM_001136271 ENSG00000180053 NKX2-6 CSX2|CTHM|NKX2F|NKX4-2 NK2 homeobox 6 protein-coding 13-PTNLD9-TUMOR_peak_39513 chr4 143807893 143808020 + 9.09697 NA Intergenic Intergenic -40352 NM_001101669 8821 Hs.531403 NM_003866 HPRD:06322 INPP4B - inositol polyphosphate-4-phosphatase, type II, 105kDa protein-coding 13-PTNLD9-TUMOR_peak_30163 chr2 240490876 240491141 + 9.09697 NA Intergenic Intergenic -168365 NM_006037 9759 Hs.20516 NM_006037 HPRD:05610 HDAC4 AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA histone deacetylase 4 protein-coding 13-PTNLD9-TUMOR_peak_45826 chr6 106642897 106643214 + 9.09697 NA intron (NR_104402, intron 5 of 5) intron (NR_104402, intron 5 of 5) 96318 NM_182907 639 Hs.436023 NM_001198 HPRD:04572 PRDM1 BLIMP1|PRDI-BF1 PR domain containing 1, with ZNF domain protein-coding 13-PTNLD9-TUMOR_peak_30283 chr20 2112138 2112242 + 9.09697 NA intron (NM_080836, intron 3 of 3) Tigger3|DNA|TcMar-Tigger 29662 NM_080836 140901 Hs.100057 NM_080836 HPRD:11612 STK35 CLIK1|STK35L1 serine/threonine kinase 35 protein-coding 13-PTNLD9-TUMOR_peak_24514 chr19 21903308 21903976 + 9.09697 NA Intergenic SVA_E|Other|Other -29905 NR_024523 641367 Hs.680128 NR_024523 ENSG00000269845 LOC641367 - cyclin Y-like 1 pseudogene pseudo 13-PTNLD9-TUMOR_peak_22170 chr17 76393835 76394004 + 9.09546 NA intron (NR_111989, intron 2 of 8) intron (NR_111989, intron 2 of 8) 19220 NM_024419 9489 Hs.654671 NM_024419 HPRD:17841 PGS1 - phosphatidylglycerophosphate synthase 1 protein-coding 13-PTNLD9-TUMOR_peak_49472 chr7 142869589 142869695 + 9.09546 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -10870 NM_176881 259285 Hs.553660 NM_176881 HPRD:18149 TAS2R39 T2R39|T2R57 taste receptor, type 2, member 39 protein-coding 13-PTNLD9-TUMOR_peak_50970 chr8 55389305 55389484 + 9.09384 NA Intergenic Intergenic 18899 NM_022454 64321 Hs.98367 NM_022454 HPRD:18085 SOX17 VUR3 SRY (sex determining region Y)-box 17 protein-coding 13-PTNLD9-TUMOR_peak_54738 chr9 126139895 126140101 + 9.09384 NA 3' UTR (NM_173689, exon 13 of 13) 3' UTR (NM_173689, exon 13 of 13) 8940 NR_104603 286204 Hs.568340 NM_173689 HPRD:13093 CRB2 - crumbs family member 2 protein-coding 13-PTNLD9-TUMOR_peak_23805 chr19 7544387 7544527 + 9.08578 NA intron (NM_001300881, intron 3 of 4) intron (NM_001300881, intron 3 of 4) -6210 NR_024491 100128573 Hs.465761 NR_024491 LOC100128573 - uncharacterized LOC100128573 ncRNA 13-PTNLD9-TUMOR_peak_9622 chr11 44008920 44009083 + 9.08578 NA Intergenic Intergenic 44895 NM_001145033 387763 Hs.530443 NM_001145033 C11orf96 AG2 chromosome 11 open reading frame 96 protein-coding 13-PTNLD9-TUMOR_peak_36881 chr3 179558914 179559072 + 9.08578 NA intron (NM_001256755, intron 7 of 13) L2c|LINE|L2 -56989 NR_110059 101928790 Hs.667247 NR_110059 ENSG00000244302 LOC101928790 - uncharacterized LOC101928790 ncRNA 13-PTNLD9-TUMOR_peak_26510 chr2 31583483 31583742 + 9.08578 NA intron (NM_000379, intron 24 of 35) Tigger7|DNA|TcMar-Tigger 53999 NM_000379 7498 Hs.250 NM_000379 HPRD:06363 XDH XO|XOR xanthine dehydrogenase protein-coding 13-PTNLD9-TUMOR_peak_45516 chr6 74420280 74420453 + 9.08578 NA intron (NM_133493, intron 2 of 32) intron (NM_133493, intron 2 of 32) -14512 NR_110889 101928489 Hs.660059 NR_110889 LOC101928489 - uncharacterized LOC101928489 ncRNA 13-PTNLD9-TUMOR_peak_45903 chr6 111605566 111605677 + 9.08578 NA Intergenic LTR2B|LTR|ERV1 25139 NM_153369 91749 Hs.400572 NM_153369 KIAA1919 MFSD4B|NaGLT1 KIAA1919 protein-coding 13-PTNLD9-TUMOR_peak_30597 chr20 22772673 22772938 + 9.08578 NA Intergenic Intergenic -184650 NR_109883 101929685 Hs.563018 NR_109883 LINC01384 - long intergenic non-protein coding RNA 1384 ncRNA 13-PTNLD9-TUMOR_peak_26426 chr2 28473040 28473167 + 9.08578 NA intron (NM_199193, intron 11 of 13) L2b|LINE|L2 -43275 NR_120504 100505736 Hs.659540 NR_120504 LOC100505736 - uncharacterized LOC100505736 ncRNA 13-PTNLD9-TUMOR_peak_18757 chr16 22364852 22365320 + 9.08578 NA intron (NM_001802, intron 2 of 4) MER34B|LTR|ERV1 20852 NM_001802 1039 Hs.513430 NM_001802 HPRD:06681 CDR2 CDR62|Yo cerebellar degeneration-related protein 2, 62kDa protein-coding 13-PTNLD9-TUMOR_peak_9526 chr11 35030773 35031111 + 9.08578 NA Intergenic L2b|LINE|L2 67558 NR_039836 100616437 NR_039836 MIR1343 - microRNA 1343 ncRNA 13-PTNLD9-TUMOR_peak_739 chr1 25870063 25870323 + 9.08578 NA exon (NM_015627, exon 1 of 9) exon (NM_015627, exon 1 of 9) 117 NM_015627 26119 Hs.590911 NM_015627 HPRD:05765 LDLRAP1 ARH|ARH1|ARH2|FHCB1|FHCB2 low density lipoprotein receptor adaptor protein 1 protein-coding 13-PTNLD9-TUMOR_peak_650 chr1 22778217 22778435 + 9.08578 NA promoter-TSS (NM_014870) promoter-TSS (NM_014870) -18 NM_014870 9923 Hs.418966 NM_014870 HPRD:11086 ZBTB40 ZNF923 zinc finger and BTB domain containing 40 protein-coding 13-PTNLD9-TUMOR_peak_7611 chr10 71455865 71456020 + 9.08578 NA Intergenic MER119|DNA|hAT-Charlie 65939 NM_145306 219738 Hs.522992 NM_145306 HPRD:12573 C10orf35 - chromosome 10 open reading frame 35 protein-coding 13-PTNLD9-TUMOR_peak_21427 chr17 48115207 48115335 + 9.08578 NA Intergenic Intergenic 17832 NR_038230 284080 Hs.274864 NR_038230 ENSG00000246640 LOC284080 - uncharacterized LOC284080 ncRNA 13-PTNLD9-TUMOR_peak_53711 chr9 80322712 80322866 + 9.08578 NA Intergenic Intergenic -59557 NM_004297 9630 Hs.657795 NM_004297 HPRD:05095 GNA14 - guanine nucleotide binding protein (G protein), alpha 14 protein-coding 13-PTNLD9-TUMOR_peak_40037 chr4 186732865 186733172 + 9.08578 NA promoter-TSS (NM_001145671) promoter-TSS (NM_001145671) 392 NM_001145670 8470 Hs.619806 NM_003603 HPRD:12473 SORBS2 ARGBP2|PRO0618 sorbin and SH3 domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_54679 chr9 124462445 124462657 + 9.08578 NA intron (NM_032552, intron 3 of 16) intron (NM_032552, intron 3 of 16) -42513 NM_138709 153090 Hs.522378 NM_032552 HPRD:09903 DAB2IP AF9Q34|AIP-1|AIP1|DIP1/2 DAB2 interacting protein protein-coding 13-PTNLD9-TUMOR_peak_43690 chr6 7787491 7787852 + 9.08578 NA intron (NM_001718, intron 1 of 6) intron (NM_001718, intron 1 of 6) 60660 NM_001718 654 Hs.285671 NM_001718 HPRD:00211 BMP6 VGR|VGR1 bone morphogenetic protein 6 protein-coding 13-PTNLD9-TUMOR_peak_53774 chr9 84489889 84490139 + 9.08578 NA Intergenic L2|LINE|L2 -38338 NR_026851 347127 Hs.215235 NM_198509 ENSG00000240632 SPATA31D5P FAM75D5|FAM75D5P SPATA31 subfamily D, member 5, pseudogene pseudo 13-PTNLD9-TUMOR_peak_15053 chr13 104963459 104963659 + 9.08578 NA Intergenic MLT1J2-int|LTR|ERVL-MaLR -1028711 NR_049840 100847092 NR_049840 MIR548AS - microRNA 548as ncRNA 13-PTNLD9-TUMOR_peak_17556 chr15 70326118 70326249 + 9.08578 NA Intergenic CpG 45624 NR_030714 693214 NR_030714 MIR629 MIRN629|hsa-mir-629 microRNA 629 ncRNA 13-PTNLD9-TUMOR_peak_15395 chr14 24887751 24888028 + 9.08578 NA 3' UTR (NM_025081, exon 9 of 9) 3' UTR (NM_025081, exon 9 of 9) -10603 NM_001290256 23351 Hs.713590 NM_015299 HPRD:11076 KHNYN KIAA0323 KH and NYN domain containing protein-coding 13-PTNLD9-TUMOR_peak_34725 chr3 56725591 56725829 + 9.08578 NA Intergenic Intergenic -8575 NM_001112736 23272 Hs.116877 NM_015224 HPRD:10183 FAM208A C3orf63|RAP140|se89-1 family with sequence similarity 208, member A protein-coding 13-PTNLD9-TUMOR_peak_51121 chr8 70660520 70660638 + 9.08578 NA intron (NM_001146008, intron 3 of 7) intron (NM_001146008, intron 3 of 7) 84825 NM_001146009 81796 Hs.152460 NM_030958 HPRD:15399 SLCO5A1 OATP-J|OATP-RP4|OATP5A1|OATPRP4|SLC21A15 solute carrier organic anion transporter family, member 5A1 protein-coding 13-PTNLD9-TUMOR_peak_28061 chr2 112114385 112114537 + 9.08181 NA Intergenic Intergenic -35793 NR_039634 100616499 NR_039634 miRBase:MI0016775 MIR4435-1 - microRNA 4435-1 ncRNA 13-PTNLD9-TUMOR_peak_42672 chr5 150473060 150473337 + 9.08181 NA Intergenic Intergenic -5977 NM_001252390 10318 Hs.355141 NM_006058 HPRD:09216 TNIP1 ABIN-1|NAF1|VAN|nip40-1 TNFAIP3 interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_17969 chr15 90863318 90863489 + 9.08181 NA Intergenic Intergenic 29276 NR_028287 23766 Hs.592014 NR_028287 GABARAPL3 ATG8D GABA(A) receptors associated protein like 3, pseudogene pseudo 13-PTNLD9-TUMOR_peak_54563 chr9 117929559 117929744 + 9.08181 NA intron (NM_017418, intron 1 of 7) L2c|LINE|L2 25554 NM_017418 50514 Hs.148841 NM_017418 HPRD:16068 DEC1 CTS9 deleted in esophageal cancer 1 protein-coding 13-PTNLD9-TUMOR_peak_33232 chr22 37997641 37997844 + 9.08181 NA Intergenic Intergenic -6739 NM_001001561 26088 Hs.499158 NM_013365 HPRD:12078 GGA1 - golgi-associated, gamma adaptin ear containing, ARF binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_37833 chr4 7436669 7436774 + 9.08181 NA promoter-TSS (NM_001085382) promoter-TSS (NM_001085382) -21 NM_001085382 768239 Hs.662523 NM_001085382 ENSG00000178597 PSAPL1 - prosaposin-like 1 (gene/pseudogene) protein-coding 13-PTNLD9-TUMOR_peak_42363 chr5 140797169 140797448 + 9.08181 NA promoter-TSS (NM_018927) promoter-TSS (NM_018927) 48 NM_018927 56099 Hs.368160 NM_018927 HPRD:06952 PCDHGB7 ME6|PCDH-GAMMA-B7 protocadherin gamma subfamily B, 7 protein-coding 13-PTNLD9-TUMOR_peak_27760 chr2 97760323 97760681 + 9.08181 NA promoter-TSS (NM_199336) promoter-TSS (NM_199336) 80 NM_199336 151313 Hs.567723 NM_199336 HPRD:13198 FAHD2B - fumarylacetoacetate hydrolase domain containing 2B protein-coding 13-PTNLD9-TUMOR_peak_30653 chr20 25053190 25053311 + 9.08181 NA non-coding (NR_045951, exon 4 of 5) non-coding (NR_045951, exon 4 of 5) 9765 NM_001256272 30813 Hs.274264 NM_014588 HPRD:09232 VSX1 CAASDS|KTCN|KTCN1|PPCD|PPCD1|PPD|RINX visual system homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_11776 chr12 680617 680814 + 9.08043 NA intron (NM_016533, intron 1 of 3) intron (NM_016533, intron 1 of 3) 38864 NM_001294345 4815 Hs.655804 NM_016533 HPRD:09530 NINJ2 - ninjurin 2 protein-coding 13-PTNLD9-TUMOR_peak_10179 chr11 64644410 64644674 + 9.08043 NA intron (NM_001282445, intron 2 of 5) intron (NM_001282445, intron 2 of 5) 1698 NM_006795 10938 Hs.523774 NM_006795 HPRD:09325 EHD1 H-PAST|HPAST1|PAST|PAST1 EH-domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_23494 chr18 74777216 74777365 + 9.08043 NA intron (NM_001025101, intron 3 of 8) MSTC|LTR|ERVL-MaLR -48235 NM_001025092 4155 Hs.551713 NM_002385 HPRD:01158 MBP - myelin basic protein protein-coding 13-PTNLD9-TUMOR_peak_51772 chr8 121825482 121825767 + 9.08043 NA Intergenic Intergenic -1315 NM_021021 6641 Hs.46701 NM_021021 HPRD:02490 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1) protein-coding 13-PTNLD9-TUMOR_peak_371 chr1 10519260 10519383 + 9.07893 NA Intergenic Intergenic 9545 NM_001302 1325 Hs.412311 NM_001302 HPRD:04150 CORT CST-14|CST-17|CST-29 cortistatin protein-coding 13-PTNLD9-TUMOR_peak_11428 chr11 120367389 120367576 + 9.07893 NA Intergenic Intergenic -14983 NM_014619 2900 Hs.538738 NM_014619 HPRD:02613 GRIK4 EAA1|GRIK|GluK4|KA1 glutamate receptor, ionotropic, kainate 4 protein-coding 13-PTNLD9-TUMOR_peak_34869 chr3 66107118 66107216 + 9.07893 NA Intergenic Intergenic -12118 NM_173471 115286 Hs.379386 NM_173471 HPRD:15357 SLC25A26 SAMC solute carrier family 25 (S-adenosylmethionine carrier), member 26 protein-coding 13-PTNLD9-TUMOR_peak_41672 chr5 106299961 106300059 + 9.07893 NA intron (NR_104671, intron 2 of 3) intron (NR_104671, intron 2 of 3) 46705 NR_104671 102467213 Hs.570923 NR_104671 LOC102467213 - uncharacterized LOC102467213 ncRNA 13-PTNLD9-TUMOR_peak_50428 chr8 27213949 27214154 + 9.07893 NA intron (NM_173174, intron 6 of 35) intron (NM_173174, intron 6 of 35) 30970 NM_173175 2185 Hs.491322 NM_004103 HPRD:03131 PTK2B CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK protein tyrosine kinase 2 beta protein-coding 13-PTNLD9-TUMOR_peak_15635 chr14 45089463 45089752 + 9.07893 NA Intergenic Intergenic -113108 NM_032135 84075 Hs.307086 NM_032135 HPRD:12638 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 13-PTNLD9-TUMOR_peak_31527 chr20 51476098 51476232 + 9.07893 NA Intergenic Intergenic -112781 NM_173485 128553 Hs.473117 NM_173485 HPRD:10730 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 13-PTNLD9-TUMOR_peak_1349 chr1 41783231 41783377 + 9.07893 NA Intergenic LTR32|LTR|ERVL -44299 NM_001291281 100132074 Hs.559677 NM_001291281 ENSG00000204060 FOXO6 - forkhead box O6 protein-coding 13-PTNLD9-TUMOR_peak_26255 chr2 20101396 20101589 + 9.07893 NA exon (NM_001008237, exon 1 of 3) exon (NM_001008237, exon 1 of 3) 252 NM_001008237 130502 Hs.591547 NM_001008237 HPRD:17296 TTC32 - tetratricopeptide repeat domain 32 protein-coding 13-PTNLD9-TUMOR_peak_26448 chr2 28904153 28904335 + 9.07893 NA Intergenic Intergenic -70370 NM_206876 5500 Hs.702907 NM_002709 HPRD:11792 PPP1CB HEL-S-80p|PP-1B|PP1B|PP1beta|PPP1CD protein phosphatase 1, catalytic subunit, beta isozyme protein-coding 13-PTNLD9-TUMOR_peak_32426 chr21 43783516 43783642 + 9.07893 NA intron (NM_003225, intron 1 of 2) intron (NM_003225, intron 1 of 2) 3065 NM_003225 7031 Hs.162807 NM_003225 HPRD:00219 TFF1 BCEI|D21S21|HP1.A|HPS2|pNR-2|pS2 trefoil factor 1 protein-coding 13-PTNLD9-TUMOR_peak_42324 chr5 139742765 139743091 + 9.07893 NA intron (NM_001258427, intron 7 of 20) CpG 3141 NM_001258428 83697 Hs.550313 NM_031467 HPRD:15393 SLC4A9 AE4 solute carrier family 4, sodium bicarbonate cotransporter, member 9 protein-coding 13-PTNLD9-TUMOR_peak_17936 chr15 89462091 89462334 + 9.07893 NA Intergenic L2b|LINE|L2 -5549 NM_001114614 4240 Hs.3745 NM_005928 HPRD:03789 MFGE8 BA46|EDIL1|HMFG|HsT19888|MFG-E8|MFGM|OAcGD3S|SED1|SPAG10|hP47 milk fat globule-EGF factor 8 protein protein-coding 13-PTNLD9-TUMOR_peak_14895 chr13 78090593 78090754 + 9.07893 NA Intergenic Intergenic -19136 NM_144777 8796 Hs.534699 NM_003843 HPRD:09161 SCEL - sciellin protein-coding 13-PTNLD9-TUMOR_peak_12642 chr12 46654996 46655110 + 9.07893 NA intron (NM_001278387, intron 1 of 17) intron (NM_001278387, intron 1 of 17) 5225 NM_001278389 81539 Hs.533770 NM_030674 HPRD:12245 SLC38A1 ATA1|NAT2|SAT1|SNAT1 solute carrier family 38, member 1 protein-coding 13-PTNLD9-TUMOR_peak_54486 chr9 115873773 115873946 + 9.07450 NA promoter-TSS (NR_024376) promoter-TSS (NR_024376) 98 NR_024376 100128385 Hs.99052 NR_024376 ENSG00000225684 FAM225B C9orf110|LINC00256B|NCRNA00256B family with sequence similarity 225, member B (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_4307 chr1 167683562 167683796 + 9.07450 NA Intergenic CpG -7508 NM_024569 9019 Hs.493919 NM_003953 HPRD:05086 MPZL1 MPZL1b|PZR|PZR1b|PZRa|PZRb myelin protein zero-like 1 protein-coding 13-PTNLD9-TUMOR_peak_4543 chr1 178578147 178578399 + 9.07330 NA Intergenic Intergenic 66342 NR_033186 400798 Hs.668085 NM_207467 HPRD:13417 C1orf220 - chromosome 1 open reading frame 220 ncRNA 13-PTNLD9-TUMOR_peak_41752 chr5 112254456 112254656 + 9.07330 NA intron (NM_005669, intron 2 of 4) intron (NM_005669, intron 2 of 4) 3475 NM_005669 7905 Hs.429608 NM_005669 HPRD:15918 REEP5 C5orf18|D5S346|DP1|TB2|YOP1 receptor accessory protein 5 protein-coding 13-PTNLD9-TUMOR_peak_4052 chr1 159798072 159798300 + 9.07330 NA intron (NM_020125, intron 1 of 4) intron (NM_020125, intron 1 of 4) 1707 NM_020125 56833 Hs.438683 NM_020125 HPRD:09429 SLAMF8 BLAME|CD353|SBBI42 SLAM family member 8 protein-coding 13-PTNLD9-TUMOR_peak_21704 chr17 60550637 60550779 + 9.07330 NA Intergenic Intergenic -5678 NM_006852 11011 Hs.445078 NM_006852 TLK2 HsHPK|PKU-ALPHA tousled-like kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_7185 chr10 45360406 45360589 + 9.07330 NA intron (NR_033842, intron 2 of 7) CpG -46267 NM_001123376 643236 Hs.292788 NM_001123376 TMEM72 C10orf127|KSP37|bA285G1.3 transmembrane protein 72 protein-coding 13-PTNLD9-TUMOR_peak_37367 chr3 195269687 195269920 + 9.06769 NA exon (NM_001291504, exon 1 of 6) exon (NM_001291504, exon 1 of 6) 421 NM_001291505 5504 Hs.535731 NM_006241 HPRD:03478 PPP1R2 IPP-2|IPP2 protein phosphatase 1, regulatory (inhibitor) subunit 2 protein-coding 13-PTNLD9-TUMOR_peak_5573 chr1 224392590 224392759 + 9.06769 NA Intergenic Intergenic 8307 NR_110669 101927143 Hs.638720 NR_110669 ENSG00000232628 LOC101927143 - uncharacterized LOC101927143 ncRNA 13-PTNLD9-TUMOR_peak_37996 chr4 11067962 11068112 + 9.06674 NA Intergenic L1PA2|LINE|L1 -302414 NR_030298 693157 NR_030298 miRBase:MI0003579 MIR572 MIRN572|hsa-mir-572 microRNA 572 ncRNA 13-PTNLD9-TUMOR_peak_32203 chr21 35709002 35709324 + 9.06674 NA Intergenic Intergenic -27160 NM_172201 9992 Hs.551521 NM_172201 KCNE2 ATFB4|LQT5|LQT6|MIRP1 potassium voltage-gated channel, Isk-related family, member 2 protein-coding 13-PTNLD9-TUMOR_peak_5579 chr1 224518066 224518189 + 9.06674 NA promoter-TSS (NM_001243146) promoter-TSS (NM_001243146) -236 NM_206840 4931 Hs.497867 NM_002533 HPRD:03887 NVL - nuclear VCP-like protein-coding 13-PTNLD9-TUMOR_peak_35906 chr3 130568979 130569166 + 9.06674 NA promoter-TSS (NM_001199180) promoter-TSS (NM_001199180) -297 NM_001199182 27032 Hs.584884 NM_014382 HPRD:05089 ATP2C1 ATP2C1A|BCPM|HHD|PMR1|SPCA1|hSPCA1 ATPase, Ca++ transporting, type 2C, member 1 protein-coding 13-PTNLD9-TUMOR_peak_24765 chr19 36009342 36009466 + 9.06674 NA Intergenic Intergenic -4844 NM_001126057 93099 Hs.417795 NM_033317 HPRD:12387 DMKN UNQ729|ZD52F10 dermokine protein-coding 13-PTNLD9-TUMOR_peak_53096 chr9 35000972 35001134 + 9.06674 NA Intergenic Intergenic 10786 NM_001135005 25822 Hs.237506 NM_012266 ENSG00000137094 DNAJB5 Hsc40 DnaJ (Hsp40) homolog, subfamily B, member 5 protein-coding 13-PTNLD9-TUMOR_peak_52191 chr8 134781253 134781729 + 9.06674 NA Intergenic Intergenic 8104 NR_125422 101927798 Hs.615036 NR_125422 ENSG00000253165 LOC101927798 - uncharacterized LOC101927798 ncRNA 13-PTNLD9-TUMOR_peak_33601 chr3 5036681 5036883 + 9.06674 NA Intergenic Intergenic 15685 NM_003670 8553 Hs.744856 NM_003670 HPRD:16050 BHLHE40 BHLHB2|DEC1|HLHB2|SHARP-2|STRA13|Stra14 basic helix-loop-helix family, member e40 protein-coding 13-PTNLD9-TUMOR_peak_36764 chr3 172566822 172567041 + 9.06674 NA Intergenic Intergenic 98456 NM_001258315 1894 Hs.518299 NM_018098 HPRD:11860 ECT2 ARHGEF31 epithelial cell transforming 2 protein-coding 13-PTNLD9-TUMOR_peak_22456 chr18 3246159 3246269 + 9.06397 NA Intergenic Intergenic -1314 NM_006471 10627 Hs.190086 NM_006471 HPRD:14735 MYL12A HEL-S-24|MLCB|MRCL3|MRLC3|MYL2B myosin, light chain 12A, regulatory, non-sarcomeric protein-coding 13-PTNLD9-TUMOR_peak_54510 chr9 116382828 116382992 + 9.06397 NA Intergenic Intergenic 26476 NM_001276262 5998 Hs.494875 NM_017790 HPRD:03720 RGS3 C2PA|RGP3 regulator of G-protein signaling 3 protein-coding 13-PTNLD9-TUMOR_peak_37606 chr4 2011614 2011793 + 9.06397 NA promoter-TSS (NM_005663) promoter-TSS (NM_005663) -741 NM_005663 7469 Hs.21771 NM_005663 HPRD:12080 NELFA NELF-A|WHSC2 negative elongation factor complex member A protein-coding 13-PTNLD9-TUMOR_peak_33814 chr3 12894835 12895204 + 9.06397 NA Intergenic Intergenic -11938 NM_001007073 6161 Hs.265174 NM_000994 HPRD:17995 RPL32 L32 ribosomal protein L32 protein-coding 13-PTNLD9-TUMOR_peak_24181 chr19 14474554 14474736 + 9.06397 NA Intergenic Intergenic -17311 NM_078481 976 Hs.466039 NM_001784 HPRD:03130 CD97 TM7LN1 CD97 molecule protein-coding 13-PTNLD9-TUMOR_peak_48651 chr7 102230390 102230541 + 9.06176 NA intron (NM_001079877, intron 16 of 19) intron (NM_001079877, intron 16 of 19) -17397 NM_001097615 548644 Hs.610255 NM_001015884 HPRD:18684 POLR2J3 POLR2J2|RPB11b1|RPB11b2 polymerase (RNA) II (DNA directed) polypeptide J3 protein-coding 13-PTNLD9-TUMOR_peak_26 chr1 672533 672658 + 9.05962 NA Intergenic Intergenic -6864 NR_028327 100133331 Hs.733048 NR_028327 LOC100133331 - uncharacterized LOC100133331 ncRNA 13-PTNLD9-TUMOR_peak_17796 chr15 82728080 82728289 + 9.05435 NA exon (NM_001291420, exon 7 of 8) exon (NM_001291420, exon 7 of 8) 5196 NM_001291420 440295 Hs.498322 NM_198181 HPRD:11262 GOLGA6L9 GOLGA6L20 golgin A6 family-like 9 protein-coding 13-PTNLD9-TUMOR_peak_4631 chr1 181091503 181091657 + 9.05435 NA Intergenic L2b|LINE|L2 33942 NM_016545 51278 Hs.15725 NM_016545 HPRD:06210 IER5 SBBI48 immediate early response 5 protein-coding 13-PTNLD9-TUMOR_peak_17819 chr15 83104605 83104814 + 9.05435 NA exon (NM_198181, exon 8 of 9) exon (NM_198181, exon 8 of 9) 5999 NM_198181 440295 Hs.498322 NM_198181 HPRD:11262 GOLGA6L9 GOLGA6L20 golgin A6 family-like 9 protein-coding 13-PTNLD9-TUMOR_peak_28142 chr2 114040751 114040895 + 9.05250 NA Intergenic Intergenic -4325 NM_003466 7849 Hs.469728 NM_003466 HPRD:01335 PAX8 - paired box 8 protein-coding 13-PTNLD9-TUMOR_peak_51245 chr8 86839328 86840278 + 9.05235 NA non-coding (NR_003594, exon 1 of 1).10 non-coding (NR_003594, exon 1 of 1).10 368 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene) pseudo 13-PTNLD9-TUMOR_peak_40173 chr5 1118943 1119132 + 9.04318 NA Intergenic Intergenic -6865 NM_006598 10723 Hs.172613 NM_006598 HPRD:09221 SLC12A7 KCC4 solute carrier family 12 (potassium/chloride transporter), member 7 protein-coding 13-PTNLD9-TUMOR_peak_23352 chr18 59274150 59274280 + 9.04130 NA Intergenic Intergenic 116440 NM_031891 28316 Hs.671510 NM_031891 HPRD:10429 CDH20 CDH7L3|Cdh7 cadherin 20, type 2 protein-coding 13-PTNLD9-TUMOR_peak_30227 chr2 243030744 243030893 + 9.04130 NA promoter-TSS (NR_024437) promoter-TSS (NR_024437) -26 NR_024437 728323 Hs.471887 NR_024437 LOC728323 - uncharacterized LOC728323 ncRNA 13-PTNLD9-TUMOR_peak_817 chr1 27718939 27719116 + 9.04130 NA promoter-TSS (NM_005281) promoter-TSS (NM_005281) -121 NM_005281 2827 Hs.66542 NM_005281 HPRD:02587 GPR3 ACCA G protein-coupled receptor 3 protein-coding 13-PTNLD9-TUMOR_peak_26285 chr2 21261597 21261877 + 9.04130 NA intron (NM_000384, intron 4 of 28) L1ME4a|LINE|L1 5208 NM_000384 338 Hs.120759 NM_000384 HPRD:00133 APOB FLDB|LDLCQ4 apolipoprotein B protein-coding 13-PTNLD9-TUMOR_peak_51043 chr8 63951127 63951544 + 9.04130 NA 5' UTR (NM_003878, exon 1 of 9) 5' UTR (NM_003878, exon 1 of 9) 275 NM_003878 8836 Hs.78619 NM_003878 HPRD:03299 GGH GH gamma-glutamyl hydrolase (conjugase, folylpolygammaglutamyl hydrolase) protein-coding 13-PTNLD9-TUMOR_peak_48118 chr7 78332208 78332354 + 9.04130 NA intron (NM_001301128, intron 2 of 20) L2|LINE|L2 -306023 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_40333 chr5 10857101 10857372 + 9.04130 NA Intergenic Intergenic -95849 NM_001291963 1611 Hs.75189 NM_004394 HPRD:02977 DAP - death-associated protein protein-coding 13-PTNLD9-TUMOR_peak_34779 chr3 58546505 58546765 + 9.04130 NA Intergenic Intergenic 16856 NM_001076778 11170 Hs.506357 NM_007177 HPRD:09753 FAM107A DRR1|TU3A family with sequence similarity 107, member A protein-coding 13-PTNLD9-TUMOR_peak_7459 chr10 61553699 61553946 + 9.04130 NA intron (NM_005436, intron 8 of 8) intron (NM_005436, intron 8 of 8) -40619 NR_038199 100507027 Hs.648790 NR_038199 ENSG00000227877 LINC00948 M1|MUSER1 long intergenic non-protein coding RNA 948 ncRNA 13-PTNLD9-TUMOR_peak_13087 chr12 60305439 60305635 + 9.04130 NA Intergenic MLT1I|LTR|ERVL-MaLR 222419 NR_073056 9194 Hs.88156 NM_004731 HPRD:06791 SLC16A7 MCT2 solute carrier family 16 (monocarboxylate transporter), member 7 protein-coding 13-PTNLD9-TUMOR_peak_39274 chr4 124791479 124791631 + 9.04099 NA intron (NR_027105, intron 3 of 4) intron (NR_027105, intron 3 of 4) 96136 NR_027106 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 13-PTNLD9-TUMOR_peak_42314 chr5 139641097 139641209 + 9.04099 NA intron (NM_002622, intron 3 of 3) intron (NM_002622, intron 3 of 3) 41536 NM_002622 5201 Hs.483564 NM_002622 HPRD:05357 PFDN1 PDF|PFD1 prefoldin subunit 1 protein-coding 13-PTNLD9-TUMOR_peak_4271 chr1 166277219 166277337 + 9.04099 NA Intergenic Intergenic -141320 NM_001017961 149297 Hs.133029 NM_001017961 HPRD:18557 FAM78B - family with sequence similarity 78, member B protein-coding 13-PTNLD9-TUMOR_peak_54974 chr9 136114492 136114752 + 9.04099 NA Intergenic Intergenic -29985 NR_110243 29989 Hs.449629 NM_014581 HPRD:05209 OBP2B LCN14|OBPIIb odorant binding protein 2B protein-coding 13-PTNLD9-TUMOR_peak_4237 chr1 165005812 165005919 + 9.04099 NA Intergenic MLT2E|LTR|ERVL -261987 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 13-PTNLD9-TUMOR_peak_14397 chr13 21476761 21477064 + 9.04099 NA promoter-TSS (NM_022459) promoter-TSS (NM_022459) 1 NM_022459 64328 Hs.507452 NM_022459 HPRD:18307 XPO4 exp4 exportin 4 protein-coding 13-PTNLD9-TUMOR_peak_12944 chr12 54986205 54986319 + 9.04099 NA Intergenic MARNA|DNA|TcMar-Mariner -3819 NM_006741 5502 Hs.505662 NM_006741 HPRD:17893 PPP1R1A I1|IPP1 protein phosphatase 1, regulatory (inhibitor) subunit 1A protein-coding 13-PTNLD9-TUMOR_peak_53765 chr9 84241544 84241657 + 9.04099 NA intron (NM_005077, intron 8 of 19) intron (NM_005077, intron 8 of 19) 61996 NM_005077 7088 Hs.197320 NM_005077 HPRD:02557 TLE1 ESG|ESG1|GRG1 transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_45190 chr6 45933643 45933796 + 9.04099 NA intron (NM_001114086, intron 1 of 5) intron (NM_001114086, intron 1 of 5) -28385 NR_045673 53405 Hs.485489 NM_016929 HPRD:06292 CLIC5 MST130|MSTP130 chloride intracellular channel 5 protein-coding 13-PTNLD9-TUMOR_peak_30914 chr20 35101274 35101449 + 9.04099 NA intron (NM_183006, intron 1 of 6) intron (NM_183006, intron 1 of 6) 11175 NM_183006 22839 Hs.249600 NM_014902 HPRD:16826 DLGAP4 DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4 discs, large (Drosophila) homolog-associated protein 4 protein-coding 13-PTNLD9-TUMOR_peak_27784 chr2 98995425 98995741 + 9.04099 NA intron (NM_001079878, intron 3 of 6) intron (NM_001079878, intron 3 of 6) 32965 NM_001298 1261 Hs.234785 NM_001298 HPRD:02504 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 13-PTNLD9-TUMOR_peak_1045 chr1 34359130 34359336 + 9.04099 NA intron (NM_052896, intron 5 of 69) intron (NM_052896, intron 5 of 69) 24676 NR_038372 402779 Hs.666207 NR_038372 ENSG00000231163 CSMD2-AS1 - CSMD2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_6605 chr10 18916721 18916889 + 9.04099 NA intron (NM_182543, intron 3 of 10) L1PA3|LINE|L1 23761 NM_182543 221078 Hs.396175 NM_182543 HPRD:14843 NSUN6 4933414E04Rik|ARL5B-AS1|NOPD1 NOP2/Sun domain family, member 6 protein-coding 13-PTNLD9-TUMOR_peak_35203 chr3 101280566 101280763 + 9.04099 NA promoter-TSS (NM_017819) promoter-TSS (NM_017819) -16 NM_017819 54931 Hs.594839 NM_017819 HPRD:15240 TRMT10C HNYA|MRPP1|RG9MTD1 tRNA methyltransferase 10 homolog C (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_52600 chr9 694855 695050 + 9.04099 NA intron (NM_001256877, intron 3 of 12) intron (NM_001256877, intron 3 of 12) -11854 NM_153186 23189 Hs.306764 NM_015158 HPRD:09651 KANK1 ANKRD15|CPSQ2|KANK KN motif and ankyrin repeat domains 1 protein-coding 13-PTNLD9-TUMOR_peak_36054 chr3 136410765 136410919 + 9.04099 NA intron (NM_005862, intron 1 of 33) PRIMA4-int|LTR|ERV1 60403 NM_005862 10274 Hs.412586 NM_005862 HPRD:05076 STAG1 SA1|SCC3A stromal antigen 1 protein-coding 13-PTNLD9-TUMOR_peak_49503 chr7 143398521 143398674 + 9.04099 NA intron (NM_173678, intron 1 of 6) intron (NM_173678, intron 1 of 6) -14342 NM_001130026 285966 Hs.743565 NM_173678 HPRD:07117 FAM115C FAM139A family with sequence similarity 115, member C protein-coding 13-PTNLD9-TUMOR_peak_42070 chr5 132792616 132792742 + 9.04099 NA intron (NM_015082, intron 3 of 15) intron (NM_015082, intron 3 of 15) -29281 NR_031621 100302134 NR_031621 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 13-PTNLD9-TUMOR_peak_32773 chr22 20129326 20129662 + 9.04033 NA intron (NM_013373, intron 9 of 10) intron (NM_013373, intron 9 of 10) 7937 NM_001243537 388849 Hs.454905 NM_001243537 LOC388849 - uncharacterized LOC388849 protein-coding 13-PTNLD9-TUMOR_peak_22006 chr17 73629149 73629282 + 9.04033 NA promoter-TSS (NM_001162995) promoter-TSS (NM_001162995) -299 NM_001162995 643008 Hs.528605 NM_001162995 ENSG00000204323 SMIM5 C17orf109|PP12104 small integral membrane protein 5 protein-coding 13-PTNLD9-TUMOR_peak_50285 chr8 22298416 22298574 + 9.04033 NA promoter-TSS (NM_001243974) promoter-TSS (NM_001243974) 12 NM_001243974 5533 Hs.731683 NM_005605 HPRD:00236 PPP3CC CALNA3|CNA3|PP2Bgamma protein phosphatase 3, catalytic subunit, gamma isozyme protein-coding 13-PTNLD9-TUMOR_peak_1178 chr1 37952835 37953130 + 9.04033 NA Intergenic Intergenic 7151 NR_106790 102465438 NR_106790 MIR6732 hsa-mir-6732 microRNA 6732 ncRNA 13-PTNLD9-TUMOR_peak_20054 chr16 87979449 87979584 + 9.04033 NA Intergenic MLT1K|LTR|ERVL-MaLR -5522 NM_001173541 54971 Hs.461705 NM_017869 HPRD:16538 BANP BEND1|SMAR1|SMARBP1 BTG3 associated nuclear protein protein-coding 13-PTNLD9-TUMOR_peak_1036 chr1 33936232 33936333 + 9.04033 NA Intergenic Intergenic -1950 NM_145238 7579 Hs.442705 NM_145238 HPRD:15769 ZSCAN20 KOX29|ZFP-31|ZNF31|ZNF360 zinc finger and SCAN domain containing 20 protein-coding 13-PTNLD9-TUMOR_peak_14187 chr12 124004209 124004518 + 9.04033 NA intron (NM_178314, intron 2 of 6) intron (NM_178314, intron 2 of 6) 13902 NM_178314 353116 Hs.530315 NM_178314 HPRD:13435 RILPL1 GOSPEL|RLP1 Rab interacting lysosomal protein-like 1 protein-coding 13-PTNLD9-TUMOR_peak_3357 chr1 146639027 146639213 + 9.04033 NA intron (NR_103871, intron 2 of 6) intron (NR_103871, intron 2 of 6) 5048 NR_103871 5565 Hs.50732 NM_005399 HPRD:04117 PRKAB2 - protein kinase, AMP-activated, beta 2 non-catalytic subunit protein-coding 13-PTNLD9-TUMOR_peak_16413 chr14 89973921 89974108 + 9.04033 NA intron (NM_001085471, intron 1 of 6) intron (NM_001085471, intron 1 of 6) -68546 NR_024620 29018 Hs.673124 NM_014099 ENSG00000259073 FOXN3-AS2 - FOXN3 antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_28450 chr2 131374570 131374786 + 9.04033 NA exon (NM_001277083, exon 3 of 15) exon (NM_001277083, exon 3 of 15) 5572 NM_001277083 653781 Hs.558829 NM_001277083 ENSG00000222038 POTEJ POTE2beta POTE ankyrin domain family, member J protein-coding 13-PTNLD9-TUMOR_peak_19970 chr16 85206834 85207011 + 9.04033 NA Intergenic MIR|SINE|MIR 36166 NR_033984 400548 Hs.592054 NR_033984 LOC400548 - uncharacterized LOC400548 ncRNA 13-PTNLD9-TUMOR_peak_31565 chr20 52292888 52293068 + 9.04033 NA Intergenic AluSx|SINE|Alu -93342 NM_006526 7764 Hs.155040 NM_006526 HPRD:04272 ZNF217 ZABC1 zinc finger protein 217 protein-coding 13-PTNLD9-TUMOR_peak_37139 chr3 188014693 188014983 + 9.04003 NA intron (NM_005578, intron 2 of 10) intron (NM_005578, intron 2 of 10) 71645 NM_001167671 4026 Hs.720220 NM_005578 HPRD:02828 LPP - LIM domain containing preferred translocation partner in lipoma protein-coding 13-PTNLD9-TUMOR_peak_3620 chr1 151486347 151486617 + 9.03375 NA intron (NM_020770, intron 1 of 20) intron (NM_020770, intron 1 of 20) 2620 NM_020770 57530 Hs.591464 NM_020770 HPRD:10827 CGN - cingulin protein-coding 13-PTNLD9-TUMOR_peak_10250 chr11 65547567 65547698 + 9.03054 NA exon (NM_138368, exon 2 of 2) exon (NM_138368, exon 2 of 2) 430 NM_138368 91056 Hs.591957 NM_138368 AP5B1 AP-5|PP1030 adaptor-related protein complex 5, beta 1 subunit protein-coding 13-PTNLD9-TUMOR_peak_39460 chr4 141221529 141221696 + 9.03054 NA intron (NR_033939, intron 2 of 4) intron (NR_033939, intron 2 of 4) -42985 NM_001153446 60592 Hs.480815 NM_032547 HPRD:18027 SCOC SCOCO short coiled-coil protein protein-coding 13-PTNLD9-TUMOR_peak_40421 chr5 16585286 16585454 + 9.03054 NA intron (NM_001034850, intron 1 of 8) intron (NM_001034850, intron 1 of 8) -30665 NR_109946 101929524 Hs.734029 NR_109946 LOC101929524 - uncharacterized LOC101929524 ncRNA 13-PTNLD9-TUMOR_peak_54054 chr9 97411414 97411717 + 9.03054 NA Intergenic MIR|SINE|MIR -9034 NM_001127628 2203 Hs.494496 NM_000507 HPRD:01973 FBP1 FBP fructose-1,6-bisphosphatase 1 protein-coding 13-PTNLD9-TUMOR_peak_24445 chr19 19216212 19216513 + 9.03054 NA intron (NM_178526, intron 4 of 7) intron (NM_178526, intron 4 of 7) 32948 NM_001256766 54929 Hs.631629 NM_017814 HPRD:07905 TMEM161A AROS-29 transmembrane protein 161A protein-coding 13-PTNLD9-TUMOR_peak_53946 chr9 92279885 92280107 + 9.02880 NA non-coding (NR_024280, exon 2 of 6) non-coding (NR_024280, exon 2 of 6) 25298 NR_024280 100129066 Hs.125947 NR_024280 UNQ6494 - uncharacterized LOC100129066 ncRNA 13-PTNLD9-TUMOR_peak_6394 chr10 6246349 6246498 + 9.02880 NA intron (NM_004566, intron 1 of 14) CpG-2555 1583 NM_004566 5209 Hs.195471 NM_004566 HPRD:05612 PFKFB3 IPFK2|PFK2 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 protein-coding 13-PTNLD9-TUMOR_peak_48675 chr7 102790857 102790964 + 9.02880 NA Intergenic Intergenic -1341 NM_001122838 222236 Hs.324271 NM_198990 HPRD:14809 NAPEPLD FMP30|NAPE-PLD N-acyl phosphatidylethanolamine phospholipase D protein-coding 13-PTNLD9-TUMOR_peak_38864 chr4 89544394 89544633 + 9.02834 NA intron (NM_014606, intron 3 of 25) L2c|LINE|L2 30939 NM_014606 8916 Hs.35804 NM_014606 HPRD:16093 HERC3 - HECT and RLD domain containing E3 ubiquitin protein ligase 3 protein-coding 13-PTNLD9-TUMOR_peak_50706 chr8 41470395 41470517 + 9.02834 NA exon (NM_178819, exon 8 of 13) exon (NM_178819, exon 8 of 13) 34422 NM_152568 157848 Hs.647132 NM_152568 NKX6-3 NKX6.3 NK6 homeobox 3 protein-coding 13-PTNLD9-TUMOR_peak_56371 chrX 114581896 114582000 + 9.02834 NA Intergenic SVA_F|Other|Other 57665 NM_016383 51213 Hs.242183 NM_016383 HPRD:06589 LUZP4 CT-28|CT-8|CT28|HOM-TES-85 leucine zipper protein 4 protein-coding 13-PTNLD9-TUMOR_peak_50548 chr8 31096495 31096671 + 9.02834 NA Intergenic Intergenic -205352 NM_001015508 29942 Hs.373778 NM_013357 HPRD:17933 PURG PURG-A|PURG-B purine-rich element binding protein G protein-coding 13-PTNLD9-TUMOR_peak_23034 chr18 43355242 43355546 + 9.02834 NA Intergenic CpG 48476 NM_001146037 6563 Hs.101307 NM_015865 HPRD:00195 SLC14A1 HUT11|HsT1341|JK|RACH1|RACH2|UT-B1|UT1|UTE solute carrier family 14 (urea transporter), member 1 (Kidd blood group) protein-coding 13-PTNLD9-TUMOR_peak_19852 chr16 80208332 80208514 + 9.02834 NA intron (NR_120307, intron 2 of 5) intron (NR_120307, intron 2 of 5) -366431 NM_130897 83657 Hs.98849 NM_130897 HPRD:06204 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein, light chain, roadblock-type 2 protein-coding 13-PTNLD9-TUMOR_peak_45537 chr6 76445746 76445850 + 9.02834 NA Intergenic Intergenic -13095 NM_001300899 4646 Hs.149387 NM_004999 HPRD:02985 MYO6 DFNA22|DFNB37 myosin VI protein-coding 13-PTNLD9-TUMOR_peak_55604 chrX 19003053 19003153 + 9.02834 NA promoter-TSS (NM_000292) promoter-TSS (NM_000292) -623 NM_000292 5256 Hs.54941 NM_000292 HPRD:02380 PHKA2 GSD9A|PHK|PYK|PYKL|XLG|XLG2 phosphorylase kinase, alpha 2 (liver) protein-coding 13-PTNLD9-TUMOR_peak_16364 chr14 79780499 79780608 + 9.02834 NA intron (NM_001272020, intron 1 of 5) L1HS|LINE|L1 34871 NR_073546 9369 Hs.368307 NM_004796 NRXN3 C14orf60 neurexin 3 protein-coding 13-PTNLD9-TUMOR_peak_23227 chr18 51915242 51915369 + 9.02834 NA Intergenic LTR41B|LTR|ERVL 28407 NM_001288982 162681 Hs.208701 NM_173529 HPRD:11334 C18orf54 LAS2 chromosome 18 open reading frame 54 protein-coding 13-PTNLD9-TUMOR_peak_2459 chr1 92116435 92116575 + 9.02834 NA Intergenic Intergenic 149840 NM_001134420 8317 Hs.533573 NM_003503 HPRD:10345 CDC7 CDC7L1|HsCDC7|Hsk1|huCDC7 cell division cycle 7 protein-coding 13-PTNLD9-TUMOR_peak_55006 chr9 137494525 137494742 + 9.02834 NA Intergenic Intergenic -39018 NM_001278074 1289 Hs.210283 NM_000093 HPRD:00368 COL5A1 - collagen, type V, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_9396 chr11 29365419 29365527 + 9.02834 NA Intergenic Intergenic 673104 NM_002233 3739 Hs.592002 NM_002233 HPRD:01444 KCNA4 HBK4|HK1|HPCN2|HUKII|KCNA4L|KCNA8|KV1.4|PCN2 potassium voltage-gated channel, shaker-related subfamily, member 4 protein-coding 13-PTNLD9-TUMOR_peak_10835 chr11 86262438 86262677 + 9.02834 NA intron (NM_001014811, intron 3 of 13) intron (NM_001014811, intron 3 of 13) 120683 NM_001014811 10873 Hs.199743 NM_006680 HPRD:06862 ME3 NADP-ME malic enzyme 3, NADP(+)-dependent, mitochondrial protein-coding 13-PTNLD9-TUMOR_peak_5418 chr1 220112141 220112276 + 9.02834 NA intron (NR_002753, intron 1 of 2) intron (NR_002753, intron 1 of 2) -10215 NR_046437 55532 Hs.284450 NM_018713 SLC30A10 HMDPC|ZNT10|ZNT8|ZRC1|ZnT-10 solute carrier family 30, member 10 protein-coding 13-PTNLD9-TUMOR_peak_40621 chr5 36657711 36658005 + 9.02834 NA intron (NM_001289940, intron 3 of 7) L3|LINE|CR1 51401 NM_001289940 6507 Hs.481918 NM_004172 HPRD:02523 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 (glial high affinity glutamate transporter), member 3 protein-coding 13-PTNLD9-TUMOR_peak_8516 chr10 124264184 124264402 + 9.02834 NA intron (NM_002775, intron 3 of 8) intron (NM_002775, intron 3 of 8) 43252 NM_002775 5654 Hs.501280 NM_002775 HPRD:03725 HTRA1 ARMD7|CARASIL|HtrA|L56|ORF480|PRSS11 HtrA serine peptidase 1 protein-coding 13-PTNLD9-TUMOR_peak_8509 chr10 124067659 124067790 + 9.02834 NA intron (NM_144587, intron 10 of 15) intron (NM_144587, intron 10 of 15) 36903 NM_144587 118663 Hs.422466 NM_144587 HPRD:12594 BTBD16 C10orf87 BTB (POZ) domain containing 16 protein-coding 13-PTNLD9-TUMOR_peak_39980 chr4 184826438 184826568 + 9.02834 NA promoter-TSS (NM_020225) promoter-TSS (NM_020225) -6 NM_020225 56977 Hs.21958 NM_020225 HPRD:16823 STOX2 - storkhead box 2 protein-coding 13-PTNLD9-TUMOR_peak_54307 chr9 108007464 108007642 + 9.01165 NA intron (NM_080546, intron 1 of 15) CpG 659 NM_001286730 23446 Hs.573495 NM_022109 HPRD:16197 SLC44A1 CD92|CDW92|CHTL1|CTL1 solute carrier family 44 (choline transporter), member 1 protein-coding 13-PTNLD9-TUMOR_peak_49141 chr7 131713443 131713571 + 9.01165 NA Intergenic Intergenic 118528 NR_110836 101928782 Hs.571369 NR_110836 ENSG00000224865 LOC101928782 - uncharacterized LOC101928782 ncRNA 13-PTNLD9-TUMOR_peak_49847 chr7 157726089 157726197 + 9.00706 NA intron (NM_130842, intron 10 of 21) intron (NM_130842, intron 10 of 21) 78866 NR_038966 100506585 Hs.661265 NR_038966 ENSG00000233038 LOC100506585 - uncharacterized LOC100506585 ncRNA 13-PTNLD9-TUMOR_peak_3036 chr1 117909307 117909735 + 9.00706 NA promoter-TSS (NM_006699) promoter-TSS (NM_006699) -564 NM_006699 10905 Hs.435938 NM_006699 MAN1A2 MAN1B mannosidase, alpha, class 1A, member 2 protein-coding 13-PTNLD9-TUMOR_peak_35386 chr3 112390835 112391031 + 9.00706 NA Intergenic L2b|LINE|L2 -30943 NM_199511 151887 Hs.477128 NM_199511 HPRD:10508 CCDC80 DRO1|SSG1|URB|okuribin coiled-coil domain containing 80 protein-coding 13-PTNLD9-TUMOR_peak_40710 chr5 41869800 41870003 + 9.00706 NA promoter-TSS (NR_046635) promoter-TSS (NR_046635) -231 NR_046635 100874002 Hs.375537 NR_046635 OXCT1-AS1 - OXCT1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_36469 chr3 155524022 155524148 + 9.00706 NA promoter-TSS (NM_173657) promoter-TSS (NM_173657) -30 NM_173657 285315 Hs.350846 NM_173657 HPRD:08095 C3orf33 AC3-33 chromosome 3 open reading frame 33 protein-coding 13-PTNLD9-TUMOR_peak_4622 chr1 181046832 181046944 + 9.00706 NA Intergenic Intergenic -10750 NM_016545 51278 Hs.15725 NM_016545 HPRD:06210 IER5 SBBI48 immediate early response 5 protein-coding 13-PTNLD9-TUMOR_peak_956 chr1 32132040 32132359 + 9.00706 NA intron (NM_001856, intron 52 of 70) L2a|LINE|L2 -21361 NR_033686 553115 Hs.470417 NM_012392 HPRD:10143 PEF1 ABP32|PEF1A penta-EF-hand domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_50 chr1 948672 948908 + 9.00706 NA promoter-TSS (NM_005101) promoter-TSS (NM_005101) -57 NM_005101 9636 Hs.458485 NM_005101 HPRD:00958 ISG15 G1P2|IFI15|IP17|UCRP|hUCRP ISG15 ubiquitin-like modifier protein-coding 13-PTNLD9-TUMOR_peak_15779 chr14 53258686 53258925 + 9.00706 NA promoter-TSS (NM_198066) promoter-TSS (NM_198066) -419 NM_198066 64841 Hs.478025 NM_198066 HPRD:17046 GNPNAT1 GNPNAT|Gpnat1 glucosamine-phosphate N-acetyltransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_42998 chr5 171435807 171436099 + 9.00609 NA Intergenic MLT1H2|LTR|ERVL-MaLR -2076 NM_033645 23291 Hs.484138 NM_012300 HPRD:07294 FBXW11 BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos F-box and WD repeat domain containing 11 protein-coding 13-PTNLD9-TUMOR_peak_44377 chr6 28805242 28805443 + 9.00304 NA Intergenic Intergenic 26112 NR_033379 401242 Hs.448285 NR_033379 ENSG00000225595 LOC401242 - uncharacterized LOC401242 ncRNA 13-PTNLD9-TUMOR_peak_17209 chr15 45313680 45313992 + 9.00304 NA Intergenic LTR8|LTR|ERV1 -1466 NM_003104 6652 Hs.878 NM_003104 SORD HEL-S-95n|SORD1 sorbitol dehydrogenase protein-coding 13-PTNLD9-TUMOR_peak_1379 chr1 42092393 42092539 + 9.00304 NA intron (NM_001127714, intron 2 of 7) intron (NM_001127714, intron 2 of 7) -142122 NM_001956 1907 Hs.1407 NM_001956 HPRD:07173 EDN2 ET2|PPET2 endothelin 2 protein-coding 13-PTNLD9-TUMOR_peak_1169 chr1 37503960 37504065 + 9.00304 NA Intergenic Intergenic -4168 NM_000831 2899 Hs.128848 NM_000831 HPRD:00691 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate receptor, ionotropic, kainate 3 protein-coding 13-PTNLD9-TUMOR_peak_33952 chr3 15900481 15900710 + 9.00248 NA intron (NM_015199, intron 1 of 27) CpG 458 NM_015199 23243 Hs.335239 NM_015199 HPRD:10651 ANKRD28 PITK|PPP1R65 ankyrin repeat domain 28 protein-coding 13-PTNLD9-TUMOR_peak_45361 chr6 54463815 54463996 + 9.00189 NA Intergenic Intergenic -247664 NM_001010872 222584 Hs.152423 NM_001010872 FAM83B C6orf143 family with sequence similarity 83, member B protein-coding 13-PTNLD9-TUMOR_peak_25943 chr2 1617544 1617785 + 9.00189 NA Intergenic Intergenic 130655 NM_012293 7837 Hs.332197 NM_012293 ENSG00000130508 PXDN COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO peroxidasin homolog (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_15901 chr14 58862569 58863245 + 9.00189 NA intron (NM_207377, intron 1 of 4) CpG 263 NM_207377 387990 Hs.592307 NM_207377 HPRD:18275 TOMM20L UNQ9438 translocase of outer mitochondrial membrane 20 homolog (yeast)-like protein-coding 13-PTNLD9-TUMOR_peak_14046 chr12 120868302 120868473 + 9.00189 NA Intergenic Intergenic -7506 NM_004373 1337 Hs.369624 NM_004373 HPRD:03644 COX6A1 COX6A|COX6AL cytochrome c oxidase subunit VIa polypeptide 1 protein-coding 13-PTNLD9-TUMOR_peak_12673 chr12 48173196 48173319 + 9.00189 NA intron (NM_017842, intron 2 of 2) intron (NM_017842, intron 2 of 2) 6290 NM_017842 55652 Hs.438867 NM_017842 HPRD:07916 SLC48A1 HRG-1|HRG1|hHRG-1 solute carrier family 48 (heme transporter), member 1 protein-coding 13-PTNLD9-TUMOR_peak_6285 chr10 3027996 3028255 + 9.00189 NA Intergenic MIRb|SINE|MIR -81587 NM_002627 5214 Hs.26010 NM_002627 HPRD:01384 PFKP ATP-PFK|PFK-C|PFK-P|PFKF phosphofructokinase, platelet protein-coding 13-PTNLD9-TUMOR_peak_50264 chr8 22022120 22022372 + 9.00189 NA promoter-TSS (NM_001199) promoter-TSS (NM_001199) -407 NR_033404 649 Hs.1274 NM_001199 HPRD:00209 BMP1 OI13|PCOLC|PCP|PCP2|TLD bone morphogenetic protein 1 protein-coding 13-PTNLD9-TUMOR_peak_5085 chr1 203449968 203450216 + 9.00189 NA intron (NM_002725, intron 1 of 2) intron (NM_002725, intron 1 of 2) 5209 NM_201348 5549 Hs.632481 NM_002725 HPRD:03556 PRELP MST161|MSTP161|SLRR2A proline/arginine-rich end leucine-rich repeat protein protein-coding 13-PTNLD9-TUMOR_peak_51606 chr8 110749922 110750114 + 9.00189 NA Intergenic L2a|LINE|L2 -45998 NM_001099743 55638 Hs.390738 NM_017786 HPRD:07902 SYBU GOLSYN|OCSYN|SNPHL syntabulin (syntaxin-interacting) protein-coding 13-PTNLD9-TUMOR_peak_33384 chr22 43150795 43150962 + 9.00189 NA Intergenic Charlie25|DNA|hAT-Charlie -34002 NM_017436 53947 Hs.105956 NM_017436 HPRD:06390 A4GALT A14GALT|A4GALT1|Gb3S|P(k)|P1|P1PK|PK alpha 1,4-galactosyltransferase protein-coding 13-PTNLD9-TUMOR_peak_26721 chr2 43405833 43406008 + 9.00189 NA Intergenic Intergenic 47825 NM_006887 678 Hs.503093 NM_006887 HPRD:18319 ZFP36L2 BRF2|ERF-2|ERF2|RNF162C|TIS11D ZFP36 ring finger protein-like 2 protein-coding 13-PTNLD9-TUMOR_peak_36795 chr3 176668664 176668867 + 9.00189 NA Intergenic Intergenic -133976 NR_110819 101928684 Hs.639352 NR_110819 ENSG00000228308 LINC01209 - long intergenic non-protein coding RNA 1209 ncRNA 13-PTNLD9-TUMOR_peak_36779 chr3 174667361 174667644 + 9.00189 NA intron (NM_207015, intron 1 of 13) intron (NM_207015, intron 1 of 13) 90391 NM_207015 254827 Hs.565848 NM_207015 HPRD:16388 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase-like 2 protein-coding 13-PTNLD9-TUMOR_peak_47499 chr7 51444227 51444455 + 9.00189 NA Intergenic LTR37A|LTR|ERV1 -59826 NM_001287436 23242 Hs.99141 NM_015198 HPRD:10843 COBL - cordon-bleu WH2 repeat protein protein-coding 13-PTNLD9-TUMOR_peak_7245 chr10 47249850 47249973 + 9.00189 NA Intergenic Intergenic -6400 NR_024495 642826 Hs.463017 NR_024495 BMS1P6 BMS1LP2|BMS1LP6|BMS1P2|bA302K17.2 BMS1 pseudogene 6 pseudo 13-PTNLD9-TUMOR_peak_10758 chr11 79142648 79142830 + 9.00189 NA intron (NM_001098816, intron 1 of 33) intron (NM_001098816, intron 1 of 33) 8956 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ODZ4|TNM4|Ten-M4 teneurin transmembrane protein 4 protein-coding 13-PTNLD9-TUMOR_peak_9074 chr11 12001465 12001628 + 8.99653 NA intron (NM_001018057, intron 3 of 6) intron (NM_001018057, intron 3 of 6) 28640 NM_001018057 27122 Hs.292156 NM_013253 HPRD:05659 DKK3 REIC|RIG dickkopf WNT signaling pathway inhibitor 3 protein-coding 13-PTNLD9-TUMOR_peak_7648 chr10 72416395 72416514 + 8.99653 NA Intergenic MIR3|SINE|MIR -16105 NM_139155 140766 Hs.352156 NM_080722 HPRD:06329 ADAMTS14 - ADAM metallopeptidase with thrombospondin type 1 motif, 14 protein-coding 13-PTNLD9-TUMOR_peak_29721 chr2 210741038 210741207 + 8.99653 NA intron (NM_182587, intron 23 of 62) L2b|LINE|L2 104405 NM_032504 285175 Hs.396201 NM_032504 HPRD:12809 UNC80 C2orf21|UNC-80 unc-80 homolog (C. elegans) protein-coding 13-PTNLD9-TUMOR_peak_30598 chr20 22808650 22808937 + 8.99653 NA Intergenic Intergenic -207264 NM_001052 6754 Hs.673846 NM_001052 HPRD:01676 SSTR4 SS-4-R|SS4-R|SS4R somatostatin receptor 4 protein-coding 13-PTNLD9-TUMOR_peak_43581 chr6 4313709 4313936 + 8.99653 NA Intergenic L1M3f|LINE|L1 177516 NR_103764 100507506 Hs.665936 NR_103764 ENSG00000234817 LOC100507506 - uncharacterized LOC100507506 ncRNA 13-PTNLD9-TUMOR_peak_31975 chr21 18791255 18791428 + 8.99653 NA Intergenic Intergenic -19867 NR_037586 100505929 Hs.46707 NM_001005521 ENSG00000232560 C21orf37 - chromosome 21 open reading frame 37 ncRNA 13-PTNLD9-TUMOR_peak_43143 chr5 175414180 175414336 + 8.99653 NA Intergenic Intergenic -18940 NM_032361 84321 Hs.484227 NM_032361 HPRD:09497 THOC3 THO3|hTREX45 THO complex 3 protein-coding 13-PTNLD9-TUMOR_peak_11699 chr11 131494436 131494791 + 8.99653 NA intron (NM_001048209, intron 1 of 7) intron (NM_001048209, intron 1 of 7) -83852 NR_110140 101929653 Hs.559159 NR_110140 ENSG00000237654 LOC101929653 - uncharacterized LOC101929653 ncRNA 13-PTNLD9-TUMOR_peak_45229 chr6 47103549 47103685 + 8.99653 NA Intergenic MIRb|SINE|MIR -93535 NM_153840 266977 Hs.733762 NM_025048 HPRD:08661 GPR110 KPG_012|PGR19|hGPCR36 G protein-coupled receptor 110 protein-coding 13-PTNLD9-TUMOR_peak_21559 chr17 54864467 54864620 + 8.99653 NA Intergenic MER44C|DNA|TcMar-Tigger 46713 NM_001085430 339210 Hs.658949 NM_001085430 ENSG00000214226 C17orf67 - chromosome 17 open reading frame 67 protein-coding 13-PTNLD9-TUMOR_peak_40618 chr5 36553229 36553398 + 8.99653 NA Intergenic LTR16E2|LTR|ERVL -53144 NM_001166696 6507 Hs.481918 NM_004172 HPRD:02523 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 (glial high affinity glutamate transporter), member 3 protein-coding 13-PTNLD9-TUMOR_peak_893 chr1 29557342 29557586 + 8.99653 NA promoter-TSS (NM_016011) promoter-TSS (NM_016011) 6 NM_001024732 51102 Hs.183646 NM_016011 HPRD:12192 MECR CGI-63|FASN2B|NRBF1 mitochondrial trans-2-enoyl-CoA reductase protein-coding 13-PTNLD9-TUMOR_peak_9895 chr11 57448069 57448185 + 8.99653 NA intron (NM_015457, intron 2 of 11) intron (NM_015457, intron 2 of 11) 12653 NM_015457 25921 Hs.27239 NM_015457 HPRD:15720 ZDHHC5 DHHC5|ZNF375 zinc finger, DHHC-type containing 5 protein-coding 13-PTNLD9-TUMOR_peak_37243 chr3 191872445 191872708 + 8.99469 NA intron (NM_021032, intron 4 of 4) L1PA2|LINE|L1 -83843 NR_046596 100873986 Hs.581652 NR_046596 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_31655 chr20 55623345 55623566 + 8.99469 NA Intergenic L2a|LINE|L2 -165297 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_631 chr1 22091624 22091805 + 8.99469 NA intron (NM_032236, intron 1 of 26) intron (NM_032236, intron 1 of 26) 17974 NM_001032730 84196 Hs.467524 NM_032236 HPRD:15637 USP48 RAP1GA1|USP31 ubiquitin specific peptidase 48 protein-coding 13-PTNLD9-TUMOR_peak_35797 chr3 127872688 127872855 + 8.99469 NA intron (NM_021937, intron 1 of 6) CpG 458 NM_021937 60678 Hs.477498 NM_021937 HPRD:07409 EEFSEC EFSEC|SELB eukaryotic elongation factor, selenocysteine-tRNA-specific protein-coding 13-PTNLD9-TUMOR_peak_34082 chr3 24136785 24136942 + 8.99469 NA Intergenic L1PA2|LINE|L1 7875 NR_026834 152024 Hs.385606 NR_026834 ENSG00000224074 LINC00691 - long intergenic non-protein coding RNA 691 ncRNA 13-PTNLD9-TUMOR_peak_36862 chr3 178789034 178789246 + 8.99469 NA 5' UTR (NM_152240, exon 2 of 7) 5' UTR (NM_152240, exon 2 of 7) 516 NM_152240 64393 Hs.371609 NM_022470 HPRD:07343 ZMAT3 PAG608|WIG-1|WIG1 zinc finger, matrin-type 3 protein-coding 13-PTNLD9-TUMOR_peak_9993 chr11 61062227 61062429 + 8.99469 NA intron (NM_152718, intron 1 of 19) CpG 460 NM_152718 220001 Hs.60640 NM_152718 HPRD:08116 VWCE URG11|VWC1 von Willebrand factor C and EGF domains protein-coding 13-PTNLD9-TUMOR_peak_9902 chr11 57546958 57547070 + 8.98404 NA intron (NM_001085467, intron 1 of 16) intron (NM_001085467, intron 1 of 16) 17780 NM_001085467 1500 Hs.166011 NM_001331 HPRD:03026 CTNND1 CAS|CTNND|P120CAS|P120CTN|p120|p120(CAS)|p120(CTN) catenin (cadherin-associated protein), delta 1 protein-coding 13-PTNLD9-TUMOR_peak_50969 chr8 55386654 55386788 + 8.98404 NA Intergenic Intergenic 16226 NM_022454 64321 Hs.98367 NM_022454 HPRD:18085 SOX17 VUR3 SRY (sex determining region Y)-box 17 protein-coding 13-PTNLD9-TUMOR_peak_52394 chr8 143820904 143821252 + 8.98404 NA Intergenic CpG 2751 NM_020427 57152 Hs.103505 NM_020427 HPRD:05836 SLURP1 ANUP|ARS|ArsB|LY6LS|MDM secreted LY6/PLAUR domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_36032 chr3 135029271 135029503 + 8.98404 NA Intergenic MLT1I|LTR|ERVL-MaLR 515288 NM_004441 2047 Hs.116092 NM_004441 HPRD:02790 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 13-PTNLD9-TUMOR_peak_31183 chr20 43988490 43988706 + 8.97740 NA Intergenic Intergenic -1979 NM_001197129 90196 Hs.655055 NM_033542 ENSG00000204070 SYS1 C20orf169|dJ453C12.4|dJ453C12.4.1 Sys1 golgi trafficking protein protein-coding 13-PTNLD9-TUMOR_peak_42646 chr5 150020287 150020939 + 8.97740 NA intron (NM_007286, intron 1 of 2) intron (NM_007286, intron 1 of 2) 406 NM_001109974 11346 Hs.435228 NM_007286 HPRD:12179 SYNPO - synaptopodin protein-coding 13-PTNLD9-TUMOR_peak_26737 chr2 43746950 43747367 + 8.97715 NA intron (NM_022065, intron 22 of 37) intron (NM_022065, intron 22 of 37) 75955 NM_001083953 63892 Hs.369592 NM_022065 HPRD:18177 THADA GITA thyroid adenoma associated protein-coding 13-PTNLD9-TUMOR_peak_43677 chr6 7415125 7415223 + 8.97715 NA intron (NM_153005, intron 9 of 9) Tigger7|DNA|TcMar-Tigger 12294 NM_153005 83732 Hs.437474 NM_031480 HPRD:17978 RIOK1 AD034|RRP10|bA288G3.1 RIO kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_41943 chr5 126409143 126409318 + 8.97715 NA promoter-TSS (NM_001164479) promoter-TSS (NM_001164479) -46 NM_001164479 401207 Hs.49573 NM_001164478 ENSG00000164241 C5orf63 YDR286C chromosome 5 open reading frame 63 protein-coding 13-PTNLD9-TUMOR_peak_3013 chr1 117363082 117363296 + 8.97715 NA Intergenic Intergenic 66103 NM_001767 914 Hs.523500 NM_001767 HPRD:01750 CD2 LFA-2|SRBC|T11 CD2 molecule protein-coding 13-PTNLD9-TUMOR_peak_15158 chr13 114186541 114186744 + 8.97715 NA intron (NM_017905, intron 8 of 12) intron (NM_017905, intron 8 of 12) 41334 NM_017905 55002 Hs.317593 NM_017905 HPRD:12612 TMCO3 C13orf11 transmembrane and coiled-coil domains 3 protein-coding 13-PTNLD9-TUMOR_peak_35433 chr3 114137610 114137761 + 8.97715 NA intron (NM_015642, intron 6 of 9) intron (NM_015642, intron 6 of 9) -34755 NR_121661 101929754 Hs.614195 NR_121661 LOC101929754 - uncharacterized LOC101929754 ncRNA 13-PTNLD9-TUMOR_peak_12395 chr12 27772292 27772490 + 8.97715 NA intron (NM_001198915, intron 2 of 26) MER2|DNA|TcMar-Tigger -77037 NM_001029874 387849 Hs.269836 NM_001029874 ENSG00000174236 REP15 RAB15EP RAB15 effector protein protein-coding 13-PTNLD9-TUMOR_peak_29273 chr2 183189490 183189718 + 8.97715 NA intron (NM_001003683, intron 2 of 14) L2c|LINE|L2 -82814 NM_001258314 5136 Hs.191046 NM_005019 HPRD:01387 PDE1A CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A, calmodulin-dependent protein-coding 13-PTNLD9-TUMOR_peak_43101 chr5 173809835 173809942 + 8.97715 NA intron (NR_125806, intron 1 of 5) MLT1G1|LTR|ERVL-MaLR 46531 NR_125806 101928176 Hs.436014 NR_125806 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 13-PTNLD9-TUMOR_peak_47244 chr7 36566680 36566838 + 8.97715 NA intron (NM_001177506, intron 19 of 21) intron (NM_001177506, intron 19 of 21) 72967 NR_046764 100874264 Hs.690994 NR_046764 AOAH-IT1 - AOAH intronic transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_40368 chr5 14105987 14106183 + 8.97715 NA Intergenic Intergenic -37744 NM_007118 7204 Hs.130031 NM_007118 HPRD:03537 TRIO ARHGEF23|tgat trio Rho guanine nucleotide exchange factor protein-coding 13-PTNLD9-TUMOR_peak_34265 chr3 37987585 37987795 + 8.97715 NA intron (NM_001008392, intron 1 of 7) intron (NM_001008392, intron 1 of 7) -23205 NR_029499 407015 NR_029499 MIR26A1 MIR26A|MIRN26A1 microRNA 26a-1 ncRNA 13-PTNLD9-TUMOR_peak_38924 chr4 97657815 97657932 + 8.97715 NA Intergenic L1MEc|LINE|L1 -630204 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_41535 chr5 93554177 93554466 + 8.97715 NA intron (NM_001145678, intron 20 of 20) intron (NM_001145678, intron 20 of 20) -106917 NM_001163418 83989 Hs.600086 NM_032042 HPRD:13210 FAM172A C5orf21 family with sequence similarity 172, member A protein-coding 13-PTNLD9-TUMOR_peak_18613 chr16 15596302 15596483 + 8.97715 NA intron (NM_001142469, intron 1 of 5) intron (NM_001142469, intron 1 of 5) 269 NM_001142469 89927 Hs.401798 NM_033201 HPRD:12382 C16orf45 - chromosome 16 open reading frame 45 protein-coding 13-PTNLD9-TUMOR_peak_21796 chr17 63151444 63151561 + 8.97715 NA intron (NM_001165933, intron 2 of 16) L2b|LINE|L2 18046 NM_001081955 8787 Hs.664380 NM_003835 HPRD:04962 RGS9 PERRS|RGS9L regulator of G-protein signaling 9 protein-coding 13-PTNLD9-TUMOR_peak_13847 chr12 111264542 111264712 + 8.97715 NA Intergenic Intergenic -20137 NM_001286243 160762 Hs.437141 NM_152591 HPRD:08765 CCDC63 ODA5 coiled-coil domain containing 63 protein-coding 13-PTNLD9-TUMOR_peak_11096 chr11 105500748 105501028 + 8.97715 NA intron (NM_001077243, intron 3 of 16) L2c|LINE|L2 19477 NR_046356 2893 Hs.503743 NM_000829 HPRD:00694 GRIA4 GLUR4|GLUR4C|GLURD|GluA4 glutamate receptor, ionotropic, AMPA 4 protein-coding 13-PTNLD9-TUMOR_peak_16849 chr15 27487175 27487372 + 8.97715 NA intron (NM_033223, intron 3 of 9) MLT1J|LTR|ERVL-MaLR -80807 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 LOC101928869 - uncharacterized LOC101928869 ncRNA 13-PTNLD9-TUMOR_peak_18187 chr16 1128658 1128860 + 8.97715 NA promoter-TSS (NM_001053) promoter-TSS (NM_001053) -22 NM_001053 6755 Hs.449840 NM_001053 HPRD:01677 SSTR5 SS-5-R somatostatin receptor 5 protein-coding 13-PTNLD9-TUMOR_peak_26947 chr2 54760221 54760388 + 8.97715 NA intron (NM_003128, intron 2 of 35) Tigger7|DNA|TcMar-Tigger 3945 NR_002229 56969 Hs.657366 NM_020217 RPL23AP32 RPL23A_9_220 ribosomal protein L23a pseudogene 32 pseudo 13-PTNLD9-TUMOR_peak_41422 chr5 80716186 80716334 + 8.97715 NA 3' UTR (NM_001256734, exon 16 of 16) 3' UTR (NM_001256734, exon 16 of 16) -26272 NM_130767 134526 Hs.591756 NM_130767 HPRD:16680 ACOT12 CACH-1|Cach|STARD15|THEAL acyl-CoA thioesterase 12 protein-coding 13-PTNLD9-TUMOR_peak_51482 chr8 103766453 103766666 + 8.97605 NA Intergenic Intergenic -98429 NM_005655 7071 Hs.435001 NM_005655 HPRD:03527 KLF10 EGR-alpha|EGRA|TIEG|TIEG1 Kruppel-like factor 10 protein-coding 13-PTNLD9-TUMOR_peak_34031 chr3 20296139 20296488 + 8.97483 NA Intergenic L1P3|LINE|L1 -68589 NM_001199256 151648 Hs.105153 NM_138484 HPRD:12377 SGOL1 NY-BR-85|SGO|Sgo1 shugoshin-like 1 (S. pombe) protein-coding 13-PTNLD9-TUMOR_peak_14124 chr12 122464036 122464212 + 8.97483 NA intron (NM_001024808, intron 1 of 5) AluY|SINE|Alu 4263 NM_001024808 605 Hs.530970 NM_020993 BCL7A BCL7 B-cell CLL/lymphoma 7A protein-coding 13-PTNLD9-TUMOR_peak_39010 chr4 106067558 106067930 + 8.97483 NA promoter-TSS (NM_001127208) promoter-TSS (NM_001127208) -98 NM_001127208 54790 Hs.367639 NM_017628 HPRD:07876 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 13-PTNLD9-TUMOR_peak_35781 chr3 127453605 127453811 + 8.97483 NA intron (NM_001003794, intron 3 of 7) intron (NM_001003794, intron 3 of 7) 61927 NR_033429 80325 Hs.107812 NM_032548 HPRD:10513 ABTB1 BPOZ|BTB3|BTBD21|EF1ABP ankyrin repeat and BTB (POZ) domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_13958 chr12 117316368 117316615 + 8.97483 NA intron (NR_073189, intron 1 of 4) CpG 2741 NR_073189 8739 Hs.87247 NM_003806 HRK DP5|HARAKIRI harakiri, BCL2 interacting protein protein-coding 13-PTNLD9-TUMOR_peak_18373 chr16 4524556 4524763 + 8.97363 NA promoter-TSS (NM_001127206) promoter-TSS (NM_001127206) -45 NM_001127206 3163 Hs.284279 NM_002134 HPRD:00783 HMOX2 HO-2 heme oxygenase (decycling) 2 protein-coding 13-PTNLD9-TUMOR_peak_23060 chr18 43902443 43902643 + 8.97363 NA Intergenic Intergenic -11644 NM_152470 494470 Hs.501114 NM_152470 ENSG00000141622 RNF165 ARKL2|RNF111L2 ring finger protein 165 protein-coding 13-PTNLD9-TUMOR_peak_46448 chr6 160147970 160148192 + 8.96210 NA promoter-TSS (NM_004906) promoter-TSS (NM_004906) 51 NM_152858 9589 Hs.446091 NM_004906 HPRD:09259 WTAP - Wilms tumor 1 associated protein protein-coding 13-PTNLD9-TUMOR_peak_33766 chr3 11267052 11267342 + 8.96210 NA promoter-TSS (NM_001098211) promoter-TSS (NM_001098211) -472 NM_001098211 3269 Hs.1570 NM_000861 HPRD:02544 HRH1 H1-R|hisH1 histamine receptor H1 protein-coding 13-PTNLD9-TUMOR_peak_13123 chr12 63161358 63161505 + 8.96210 NA intron (NM_020700, intron 4 of 9) MLT1C|LTR|ERVL-MaLR 163965 NR_029661 406891 NR_029661 miRBase:MI0000434 MIRLET7I LET7I|MIRNLET7I|hsa-let-7i microRNA let-7i ncRNA 13-PTNLD9-TUMOR_peak_34503 chr3 48545150 48545286 + 8.96210 NA Intergenic Intergenic -2959 NM_001272066 51246 Hs.414579 NM_016479 HPRD:06290 SHISA5 SCOTIN shisa family member 5 protein-coding 13-PTNLD9-TUMOR_peak_49292 chr7 137663386 137663496 + 8.96210 NA intron (NM_194071, intron 1 of 11) intron (NM_194071, intron 1 of 11) 23406 NM_194071 64764 Hs.490273 NM_194071 HPRD:16391 CREB3L2 BBF2H7 cAMP responsive element binding protein 3-like 2 protein-coding 13-PTNLD9-TUMOR_peak_39185 chr4 120056865 120057027 + 8.96210 NA promoter-TSS (NM_016599) promoter-TSS (NM_016599) 7 NM_016599 51778 Hs.732122 NM_016599 HPRD:05724 MYOZ2 C4orf5|CMH16|CS-1 myozenin 2 protein-coding 13-PTNLD9-TUMOR_peak_12038 chr12 7175928 7176308 + 8.96210 NA intron (NM_201442, intron 11 of 11) intron (NM_201442, intron 11 of 11) 8138 NM_201442 716 Hs.458355 NM_001734 HPRD:00397 C1S - complement component 1, s subcomponent protein-coding 13-PTNLD9-TUMOR_peak_36766 chr3 172855921 172856031 + 8.96210 NA intron (NM_031955, intron 1 of 10) intron (NM_031955, intron 1 of 10) 3082 NM_031955 83893 Hs.444236 NM_031955 HPRD:11408 SPATA16 NYD-SP12|SPGF6 spermatogenesis associated 16 protein-coding 13-PTNLD9-TUMOR_peak_17227 chr15 45923567 45923759 + 8.96210 NA intron (NM_001271213, intron 1 of 10) intron (NM_001271213, intron 1 of 10) 317 NM_001271213 58472 Hs.511251 NM_021199 HPRD:18102 SQRDL PRO1975 sulfide quinone reductase-like (yeast) protein-coding 13-PTNLD9-TUMOR_peak_48047 chr7 76002631 76002786 + 8.96210 NA Intergenic Intergenic -14366 NM_012479 7532 Hs.744840 NM_012479 HPRD:05639 YWHAG 14-3-3GAMMA|PPP1R170 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma protein-coding 13-PTNLD9-TUMOR_peak_14021 chr12 120620216 120620470 + 8.96210 NA intron (NM_006836, intron 5 of 57) MIRc|SINE|MIR 12170 NM_006836 10985 Hs.298716 NM_006836 HPRD:16127 GCN1L1 GCN1|GCN1L|PRIC295 GCN1 general control of amino-acid synthesis 1-like 1 (yeast) protein-coding 13-PTNLD9-TUMOR_peak_6249 chr10 830829 831140 + 8.96210 NA Intergenic Intergenic -95376 NM_014974 22982 Hs.432397 NM_014974 HPRD:17200 DIP2C KIAA0934 DIP2 disco-interacting protein 2 homolog C (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_10103 chr11 63203205 63203331 + 8.96210 NA intron (NR_049833, intron 2 of 3) L1PA2|LINE|L1 55412 NM_054108 117245 Hs.410316 NM_054108 HPRD:13672 HRASLS5 HRLP5|HRSL5|RLP1|iNAT HRAS-like suppressor family, member 5 protein-coding 13-PTNLD9-TUMOR_peak_39186 chr4 120130358 120130523 + 8.96119 NA Intergenic Intergenic -3342 NM_019050 54532 Hs.431081 NM_019050 HPRD:11669 USP53 - ubiquitin specific peptidase 53 protein-coding 13-PTNLD9-TUMOR_peak_21063 chr17 39933476 39933641 + 8.95872 NA intron (NM_002230, intron 1 of 13) intron (NM_002230, intron 1 of 13) 9406 NM_002230 3728 Hs.514174 NM_002230 HPRD:01414 JUP ARVD12|CTNNG|DP3|DPIII|PDGB|PKGB junction plakoglobin protein-coding 13-PTNLD9-TUMOR_peak_8218 chr10 104210251 104210408 + 8.95872 NA exon (NM_024886, exon 2 of 2) exon (NM_024886, exon 2 of 2) 755 NR_038937 100505761 Hs.656457 NR_038937 ENSG00000269609 RPARP-AS1 - RPARP antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_5491 chr1 222928171 222928281 + 8.95872 NA Intergenic Intergenic 17668 NM_207468 400823 Hs.697608 NM_207468 HPRD:16965 FAM177B - family with sequence similarity 177, member B protein-coding 13-PTNLD9-TUMOR_peak_15556 chr14 35834815 35835058 + 8.95872 NA Intergenic Intergenic 39024 NM_020529 4792 Hs.81328 NM_020529 HPRD:01235 NFKBIA IKBA|MAD-3|NFKBI nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha protein-coding 13-PTNLD9-TUMOR_peak_43168 chr5 176087939 176088049 + 8.95872 NA Intergenic Intergenic 13606 NM_012171 26262 Hs.532129 NM_012171 HPRD:18198 TSPAN17 FBX23|FBXO23|TM4SF17 tetraspanin 17 protein-coding 13-PTNLD9-TUMOR_peak_31316 chr20 46827569 46827849 + 8.95872 NA Intergenic Intergenic -160945 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 13-PTNLD9-TUMOR_peak_3954 chr1 156577994 156578116 + 8.95872 NA Intergenic Intergenic -6776 NM_015590 54865 Hs.193832 NM_015590 HPRD:13596 GPATCH4 GPATC4 G patch domain containing 4 protein-coding 13-PTNLD9-TUMOR_peak_54647 chr9 123697741 123697941 + 8.95872 NA Intergenic Intergenic -6390 NM_001190945 7185 Hs.531251 NM_005658 HPRD:03418 TRAF1 EBI6|MGC:10353 TNF receptor-associated factor 1 protein-coding 13-PTNLD9-TUMOR_peak_53064 chr9 34126372 34126511 + 8.95872 NA 5' UTR (NM_015397, exon 1 of 9) 5' UTR (NM_015397, exon 1 of 9) 330 NM_015397 25853 Hs.493750 NM_015397 HPRD:10031 DCAF12 CT102|KIAA1892|TCC52|WDR40A DDB1 and CUL4 associated factor 12 protein-coding 13-PTNLD9-TUMOR_peak_9249 chr11 18790050 18790146 + 8.95872 NA intron (NM_001278239, intron 1 of 13) intron (NM_001278239, intron 1 of 13) 23291 NM_001278238 84867 Hs.79092 NM_006906 HPRD:01472 PTPN5 PTPSTEP|STEP protein tyrosine phosphatase, non-receptor type 5 (striatum-enriched) protein-coding 13-PTNLD9-TUMOR_peak_49785 chr7 155049996 155050152 + 8.95872 NA Intergenic Intergenic -39412 NM_198337 3638 Hs.520819 NM_005542 HPRD:03633 INSIG1 CL-6|CL6 insulin induced gene 1 protein-coding 13-PTNLD9-TUMOR_peak_951 chr1 32057518 32057686 + 8.95872 NA Intergenic MIRb|SINE|MIR 13856 NM_001204415 64129 Hs.199368 NM_022164 HPRD:07122 TINAGL1 ARG1|LCN7|LIECG3|TINAGRP tubulointerstitial nephritis antigen-like 1 protein-coding 13-PTNLD9-TUMOR_peak_42238 chr5 138000388 138000486 + 8.95872 NA Intergenic Intergenic -88648 NM_001290309 1495 Hs.445981 NM_001903 HPRD:00285 CTNNA1 CAP102 catenin (cadherin-associated protein), alpha 1, 102kDa protein-coding 13-PTNLD9-TUMOR_peak_32695 chr22 18577021 18577129 + 8.95669 NA Intergenic AluY|SINE|Alu 16315 NM_001127649 55670 Hs.517400 NM_017929 PEX26 PBD7A|PBD7B|PEX26M1T|Pex26pM1T peroxisomal biogenesis factor 26 protein-coding 13-PTNLD9-TUMOR_peak_10229 chr11 65307643 65307901 + 8.95383 NA exon (NM_001164266, exon 23 of 27) exon (NM_001164266, exon 23 of 27) 15224 NM_001048218 57410 Hs.238839 NM_020680 HPRD:06414 SCYL1 GKLP|NKTL|NTKL|P105|TAPK|TEIF|TRAP SCY1-like 1 (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_42186 chr5 135645225 135645375 + 8.95234 NA intron (NM_001167577, intron 2 of 10) intron (NM_001167577, intron 2 of 10) 55864 NM_020389 57113 Hs.591263 NM_020389 HPRD:18228 TRPC7 TRP7 transient receptor potential cation channel, subfamily C, member 7 protein-coding 13-PTNLD9-TUMOR_peak_34839 chr3 64200465 64200636 + 8.95234 NA intron (NM_198859, intron 1 of 7) intron (NM_198859, intron 1 of 7) 10581 NM_198859 166336 Hs.148105 NM_198859 HPRD:16342 PRICKLE2 EPM5 prickle homolog 2 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_40361 chr5 13957317 13957419 + 8.95234 NA Intergenic Intergenic -12779 NM_001369 1767 Hs.212360 NM_001369 HPRD:04514 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein, axonemal, heavy chain 5 protein-coding 13-PTNLD9-TUMOR_peak_43882 chr6 14130817 14130955 + 8.95234 NA intron (NM_001040280, intron 2 of 4) AluJr|SINE|Alu 13021 NM_004233 9308 Hs.595133 NM_004233 HPRD:05170 CD83 BL11|HB15 CD83 molecule protein-coding 13-PTNLD9-TUMOR_peak_19361 chr16 53855543 53855664 + 8.95234 NA intron (NM_001080432, intron 2 of 8) L2b|LINE|L2 117728 NM_001080432 79068 Hs.528833 NM_001080432 FTO ALKBH9 fat mass and obesity associated protein-coding 13-PTNLD9-TUMOR_peak_14596 chr13 36920853 36921025 + 8.95234 NA promoter-TSS (NM_001142295) promoter-TSS (NM_001142295) -5 NM_001142295 23111 Hs.440414 NM_015087 HPRD:06170 SPG20 SPARTIN|TAHCCP1 spastic paraplegia 20 (Troyer syndrome) protein-coding 13-PTNLD9-TUMOR_peak_12647 chr12 46794316 46794447 + 8.95234 NA intron (NR_125381, intron 2 of 2) L2a|LINE|L2 16491 NR_125381 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 13-PTNLD9-TUMOR_peak_42201 chr5 136646072 136646342 + 8.95234 NA intron (NM_004598, intron 2 of 10) intron (NM_004598, intron 2 of 10) 188811 NM_004598 6695 Hs.596136 NM_004598 HPRD:11887 SPOCK1 SPOCK|TESTICAN|TIC1 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1 protein-coding 13-PTNLD9-TUMOR_peak_55557 chrX 13845941 13846212 + 8.95234 NA intron (NM_001001994, intron 1 of 6) intron (NM_001001994, intron 1 of 6) -10762 NM_001001996 2824 Hs.495710 NM_005278 HPRD:02082 GPM6B M6B glycoprotein M6B protein-coding 13-PTNLD9-TUMOR_peak_56287 chrX 102232282 102232427 + 8.95234 NA Intergenic Intergenic 40154 NM_001031834 282808 Hs.449517 NM_001031834 ENSG00000102128 RAB40AL MRXSMP|RAR2|RLGP RAB40A, member RAS oncogene family-like protein-coding 13-PTNLD9-TUMOR_peak_21279 chr17 44800186 44800512 + 8.95234 NA intron (NR_040116, intron 14 of 19) intron (NR_040116, intron 14 of 19) 95777 NM_030753 7473 Hs.445884 NM_030753 HPRD:01318 WNT3 INT4 wingless-type MMTV integration site family, member 3 protein-coding 13-PTNLD9-TUMOR_peak_23323 chr18 57040271 57040483 + 8.95234 NA Intergenic Intergenic -13869 NM_005570 3998 Hs.465295 NM_005570 HPRD:03338 LMAN1 ERGIC-53|ERGIC53|F5F8D|FMFD1|MCFD1|MR60|gp58 lectin, mannose-binding, 1 protein-coding 13-PTNLD9-TUMOR_peak_26492 chr2 30523608 30523874 + 8.95234 NA Intergenic L1M4|LINE|L1 -45771 NR_122048 285043 Hs.429119 NR_122048 LOC285043 - uncharacterized LOC285043 ncRNA 13-PTNLD9-TUMOR_peak_51182 chr8 79578112 79578363 + 8.95234 NA promoter-TSS (NM_016010) promoter-TSS (NM_016010) -45 NM_016010 51101 Hs.271876 NM_016010 HPRD:13039 ZC2HC1A C8orf70|FAM164A zinc finger, C2HC-type containing 1A protein-coding 13-PTNLD9-TUMOR_peak_21381 chr17 47224439 47224592 + 8.95234 NA intron (NM_153446, intron 3 of 10) LTR80A|LTR|ERVL 14186 NM_153446 124872 Hs.374679 NM_153446 HPRD:13558 B4GALNT2 B4GALT|GALGT2 beta-1,4-N-acetyl-galactosaminyl transferase 2 protein-coding 13-PTNLD9-TUMOR_peak_28656 chr2 146450727 146450974 + 8.95234 NA Intergenic Intergenic -893775 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein, cytoplasmic 1 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_15340 chr14 23822013 23822161 + 8.95234 NA promoter-TSS (NM_001289050) promoter-TSS (NM_001289050) 34 NR_110290 51310 Hs.373498 NM_016609 HPRD:15349 SLC22A17 24p3R|BOCT|BOIT|NGALR|NGALR2|NGALR3|hBOIT solute carrier family 22, member 17 protein-coding 13-PTNLD9-TUMOR_peak_22318 chr17 80193776 80194001 + 8.95166 NA promoter-TSS (NR_106845) promoter-TSS (NR_106845) 238 NM_001206952 9123 Hs.500761 NM_004207 HPRD:04854 SLC16A3 MCT 3|MCT 4|MCT-3|MCT-4|MCT3|MCT4 solute carrier family 16 (monocarboxylate transporter), member 3 protein-coding 13-PTNLD9-TUMOR_peak_41569 chr5 96039012 96039150 + 8.95166 NA intron (NM_001284212, intron 1 of 27) intron (NM_001284212, intron 1 of 27) 539 NM_001284212 831 Hs.436186 NM_001750 HPRD:00233 CAST BS-17 calpastatin protein-coding 13-PTNLD9-TUMOR_peak_24680 chr19 33546762 33546954 + 8.95166 NA intron (NM_033103, intron 1 of 14) intron (NM_033103, intron 1 of 14) 8966 NM_033103 85415 Hs.466435 NM_033103 HPRD:10192 RHPN2 P76RBE|RHOBP rhophilin, Rho GTPase binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_10035 chr11 61781125 61781334 + 8.95166 NA Intergenic Intergenic -46097 NM_002032 2495 Hs.524910 NM_002032 HPRD:00615 FTH1 FHC|FTH|FTHL6|HFE5|PIG15|PLIF ferritin, heavy polypeptide 1 protein-coding 13-PTNLD9-TUMOR_peak_21313 chr17 45609982 45610103 + 8.94362 NA intron (NM_006310, intron 1 of 22) AluSx1|SINE|Alu 1598 NM_006310 9520 Hs.443837 NM_006310 HPRD:07366 NPEPPS AAP-S|MP100|PSA aminopeptidase puromycin sensitive protein-coding 13-PTNLD9-TUMOR_peak_53151 chr9 36154351 36154866 + 8.94362 NA intron (NM_001287013, intron 4 of 4) intron (NM_001287013, intron 4 of 4) -14781 NM_005893 881 Hs.115460 NM_005893 HPRD:04907 CCIN BTBD20|KBTBD14 calicin protein-coding 13-PTNLD9-TUMOR_peak_6092 chr1 243416903 243417013 + 8.94316 NA intron (NM_001042405, intron 1 of 18) intron (NM_001042405, intron 1 of 18) 1750 NM_001042405 9859 Hs.533635 NM_014812 HPRD:17172 CEP170 FAM68A|KAB|KIAA0470 centrosomal protein 170kDa protein-coding 13-PTNLD9-TUMOR_peak_31422 chr20 48859706 48860072 + 8.94244 NA Intergenic Intergenic -24134 NM_001278655 100506115 Hs.235484 NM_001278655 LINC01272 - long intergenic non-protein coding RNA 1272 protein-coding 13-PTNLD9-TUMOR_peak_43085 chr5 173252345 173252482 + 8.94244 NA Intergenic Intergenic -34468 NR_108028 101928154 Hs.366725 NR_108028 LINC01485 - long intergenic non-protein coding RNA 1485 ncRNA 13-PTNLD9-TUMOR_peak_17639 chr15 74488733 74488897 + 8.94244 NA intron (NM_001142617, intron 4 of 18) intron (NM_001142617, intron 4 of 18) 6405 NM_022369 64220 Hs.24553 NM_022369 HPRD:18122 STRA6 MCOPCB8|MCOPS9 stimulated by retinoic acid 6 protein-coding 13-PTNLD9-TUMOR_peak_25157 chr19 46184864 46184985 + 8.94244 NA intron (NM_000164, intron 13 of 13) CpG-13958 -6658 NR_037512 100500845 NR_037512 MIR642B - microRNA 642b ncRNA 13-PTNLD9-TUMOR_peak_32489 chr21 44867291 44867472 + 8.92946 NA Intergenic Intergenic -2523 NR_026960 284836 Hs.146127 NM_194309 HPRD:10738 LINC00319 C21orf125|NCRNA00319|PRED49 long intergenic non-protein coding RNA 319 ncRNA 13-PTNLD9-TUMOR_peak_50748 chr8 42319654 42319771 + 8.92873 NA intron (NM_001257180, intron 4 of 10) L2b|LINE|L2 39266 NM_001257180 6575 Hs.653173 NM_006749 HPRD:08865 SLC20A2 GLVR-2|GLVR2|IBGC1|IBGC3|MLVAR|PIT-2|PIT2|RAM1 solute carrier family 20 (phosphate transporter), member 2 protein-coding 13-PTNLD9-TUMOR_peak_16761 chr15 21915769 21915902 + 8.92873 NA Intergenic Intergenic 24904 NR_027053 646214 Hs.510697 NR_027053 LOC646214 - p21 protein (Cdc42/Rac)-activated kinase 2 pseudogene pseudo 13-PTNLD9-TUMOR_peak_28222 chr2 119731672 119731900 + 8.92873 NA intron (NM_006770, intron 4 of 16) L2c|LINE|L2 32041 NM_006770 8685 Hs.67726 NM_006770 HPRD:05337 MARCO SCARA2 macrophage receptor with collagenous structure protein-coding 13-PTNLD9-TUMOR_peak_54402 chr9 112111790 112111933 + 8.92713 NA Intergenic Intergenic -28617 NM_018424 54566 Hs.591901 NM_018424 HPRD:09940 EPB41L4B CG1|EHM2 erythrocyte membrane protein band 4.1 like 4B protein-coding 13-PTNLD9-TUMOR_peak_36226 chr3 141934121 141934266 + 8.92713 NA intron (NR_033289, intron 2 of 16) intron (NR_033289, intron 2 of 16) 10256 NR_033289 256356 Hs.135904 NM_152776 HPRD:14612 GK5 - glycerol kinase 5 (putative) protein-coding 13-PTNLD9-TUMOR_peak_30173 chr2 240964713 240964975 + 8.92713 NA promoter-TSS (NM_004544) promoter-TSS (NM_004544) -25 NM_004544 4705 Hs.277677 NM_004544 HPRD:11950 NDUFA10 CI-42KD|CI-42k NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa protein-coding 13-PTNLD9-TUMOR_peak_32028 chr21 26946251 26946493 + 8.92713 NA promoter-TSS (NR_030784) promoter-TSS (NR_030784) 80 NR_030784 406947 NR_030784 miRBase:MI0000681 MIR155 MIRN155|miRNA155 microRNA 155 ncRNA 13-PTNLD9-TUMOR_peak_8520 chr10 124320848 124321033 + 8.92713 NA intron (NM_017579, intron 1 of 51) intron (NM_017579, intron 1 of 51) 759 NM_004406 1755 Hs.279611 NM_004406 HPRD:03575 DMBT1 GP340|muclin deleted in malignant brain tumors 1 protein-coding 13-PTNLD9-TUMOR_peak_5755 chr1 229269073 229269201 + 8.92713 NA Intergenic Intergenic -137672 NM_001271998 5867 Hs.296169 NM_004578 HPRD:01541 RAB4A HRES-1|HRES-1/RAB4|HRES1|RAB4 RAB4A, member RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_11711 chr11 133440395 133440534 + 8.92713 NA Intergenic LTR80B|LTR|ERVL -38061 NM_001012393 4978 Hs.4817 NM_002545 HPRD:07198 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule-like protein-coding 13-PTNLD9-TUMOR_peak_32876 chr22 22415119 22415216 + 8.92713 NA Intergenic Intergenic -77927 NM_001282113 8940 Hs.436401 NM_003935 HPRD:04662 TOP3B TOP3B1 topoisomerase (DNA) III beta protein-coding 13-PTNLD9-TUMOR_peak_16487 chr14 94461334 94461599 + 8.92713 NA Intergenic Intergenic -2150 NR_024182 256369 Hs.143845 NM_152777 HPRD:12651 LINC00521 C14orf48|c14_5713 long intergenic non-protein coding RNA 521 ncRNA 13-PTNLD9-TUMOR_peak_2333 chr1 85961294 85961474 + 8.92713 NA intron (NM_001134445, intron 2 of 6) intron (NM_001134445, intron 2 of 6) -30495 NM_012137 23576 Hs.713411 NM_012137 HPRD:09203 DDAH1 DDAH|HEL-S-16 dimethylarginine dimethylaminohydrolase 1 protein-coding 13-PTNLD9-TUMOR_peak_54137 chr9 99851736 99851928 + 8.92713 NA Intergenic Intergenic -7605 NR_002942 340508 Hs.680438 NR_002942 ENSG00000228376 GAS2L1P2 - growth arrest-specific 2 like 1 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_41215 chr5 71475101 71475519 + 8.92713 NA intron (NM_005909, intron 2 of 6) intron (NM_005909, intron 2 of 6) 10016 NR_039967 100616377 NR_039967 MIR4803 - microRNA 4803 ncRNA 13-PTNLD9-TUMOR_peak_22662 chr18 13395000 13395157 + 8.92713 NA intron (NM_181482, intron 3 of 5) intron (NM_181482, intron 3 of 5) 32455 NR_040031 100288122 Hs.646264 NR_040031 ENSG00000267690 LDLRAD4-AS1 - LDLRAD4 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_33056 chr22 29385014 29385329 + 8.92713 NA intron (NM_032173, intron 2 of 8) intron (NM_032173, intron 2 of 8) 42293 NR_046851 100874123 Hs.674708 NR_046851 ENSG00000177993 ZNRF3-AS1 - ZNRF3 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_4040 chr1 159147234 159147330 + 8.92713 NA intron (NM_001127173, intron 1 of 8) intron (NM_001127173, intron 1 of 8) 5868 NM_001127173 57863 Hs.365689 NM_021189 HPRD:13733 CADM3 BIgR|IGSF4B|NECL1|Necl-1|TSLL1|synCAM3 cell adhesion molecule 3 protein-coding 13-PTNLD9-TUMOR_peak_55005 chr9 137394785 137394934 + 8.92713 NA Intergenic Intergenic 96431 NM_001291921 6256 Hs.590886 NM_002957 RXRA NR2B1 retinoid X receptor, alpha protein-coding 13-PTNLD9-TUMOR_peak_16632 chr14 103606700 103606878 + 8.92713 NA Intergenic L1MC4a|LINE|L1 14125 NM_006291 7127 Hs.525607 NM_006291 HPRD:04487 TNFAIP2 B94|EXOC3L3 tumor necrosis factor, alpha-induced protein 2 protein-coding 13-PTNLD9-TUMOR_peak_37458 chr3 196810497 196810598 + 8.92713 NA intron (NM_001098424, intron 17 of 25) AluJr|SINE|Alu -53860 NM_005929 4241 Hs.184727 NM_005929 HPRD:01122 MFI2 CD228|MAP97|MTF1 antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5 protein-coding 13-PTNLD9-TUMOR_peak_42935 chr5 168591519 168591901 + 8.92573 NA intron (NM_003062, intron 4 of 35) intron (NM_003062, intron 4 of 35) 98988 NR_030311 693170 NR_030311 MIR585 MIRN585|hsa-mir-585 microRNA 585 ncRNA 13-PTNLD9-TUMOR_peak_20975 chr17 37557839 37558010 + 8.92315 NA promoter-TSS (NM_001184906) promoter-TSS (NM_001184906) -15 NM_032875 84961 Hs.462946 NM_032875 HPRD:10951 FBXL20 Fbl2|Fbl20 F-box and leucine-rich repeat protein 20 protein-coding 13-PTNLD9-TUMOR_peak_30873 chr20 33947470 33947670 + 8.92315 NA intron (NM_199487, intron 6 of 8) intron (NM_199487, intron 6 of 8) 52375 NM_018244 55245 Hs.726290 NM_018244 HPRD:12770 UQCC1 BFZB|C20orf44|CBP3|UQCC ubiquinol-cytochrome c reductase complex assembly factor 1 protein-coding 13-PTNLD9-TUMOR_peak_37167 chr3 188994749 188994862 + 8.92315 NA intron (NM_198485, intron 4 of 5) intron (NM_198485, intron 4 of 5) -36422 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_3982 chr1 157060052 157060158 + 8.92315 NA Intergenic Intergenic 9495 NM_001004341 440695 Hs.127138 NM_001004341 HPRD:13365 ETV3L - ets variant 3-like protein-coding 13-PTNLD9-TUMOR_peak_4288 chr1 166998561 166998790 + 8.92315 NA Intergenic SVA_B|Other|Other 40349 NM_001286377 84944 Hs.651245 NM_032858 HPRD:08609 MAEL CT128|SPATA35 maelstrom spermatogenic transposon silencer protein-coding 13-PTNLD9-TUMOR_peak_15603 chr14 39736144 39736378 + 8.92315 NA promoter-TSS (NM_203355) promoter-TSS (NM_203355) 4 NR_038935 100288846 Hs.509200 NR_038935 ENSG00000258940 LOC100288846 - uncharacterized LOC100288846 ncRNA 13-PTNLD9-TUMOR_peak_3800 chr1 154642281 154642392 + 8.92315 NA Intergenic Intergenic -41880 NM_001025107 103 Hs.12341 NM_001111 HPRD:07528 ADAR ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136 adenosine deaminase, RNA-specific protein-coding 13-PTNLD9-TUMOR_peak_15331 chr14 23624636 23624758 + 8.92315 NA promoter-TSS (NM_001267036) promoter-TSS (NM_001267036) -30 NM_001267036 23428 Hs.596643 NM_012244 HPRD:11971 SLC7A8 LAT2|LPI-PC1 solute carrier family 7 (amino acid transporter light chain, L system), member 8 protein-coding 13-PTNLD9-TUMOR_peak_46528 chr6 167411364 167411514 + 8.92315 NA promoter-TSS (NR_037504) promoter-TSS (NR_037504) -39 NR_037504 100500857 NR_037504 miRBase:MI0016596 MIR3939 - microRNA 3939 ncRNA 13-PTNLD9-TUMOR_peak_27914 chr2 105981380 105981549 + 8.92315 NA intron (NM_201557, intron 4 of 5) intron (NM_201557, intron 4 of 5) 27648 NM_001286537 79074 Hs.549577 NM_024093 C2orf49 asw chromosome 2 open reading frame 49 protein-coding 13-PTNLD9-TUMOR_peak_13665 chr12 105478146 105478371 + 8.92315 NA promoter-TSS (NR_027752) promoter-TSS (NR_027752) 83 NR_027752 160428 Hs.42572 NM_001034173 HPRD:18742 ALDH1L2 mtFDH aldehyde dehydrogenase 1 family, member L2 protein-coding 13-PTNLD9-TUMOR_peak_14879 chr13 76589256 76589372 + 8.92315 NA Intergenic Intergenic 144140 NM_001257995 729420 Hs.586820 NM_001257995 ENSG00000178734 LMO7DN C13orf45 LMO7 downstream neighbor protein-coding 13-PTNLD9-TUMOR_peak_22323 chr17 80225560 80225683 + 8.92315 NA intron (NR_110578, intron 1 of 8) intron (NR_110578, intron 1 of 8) 5973 NM_139062 1453 Hs.631725 NM_001893 HPRD:02920 CSNK1D ASPS|CKIdelta|FASPS2|HCKID casein kinase 1, delta protein-coding 13-PTNLD9-TUMOR_peak_2658 chr1 101491330 101491521 + 8.92315 NA promoter-TSS (NM_015958) promoter-TSS (NM_015958) 23 NR_109849 102606465 Hs.593669 NR_109849 LOC102606465 - uncharterized LOC102606465 ncRNA 13-PTNLD9-TUMOR_peak_1906 chr1 57044952 57045187 + 8.92315 NA 5' UTR (NM_003713, exon 1 of 6) 5' UTR (NM_003713, exon 1 of 6) 188 NM_003713 8613 Hs.405156 NM_003713 HPRD:06179 PPAP2B Dri42|LPP3|PAP2B|VCIP phosphatidic acid phosphatase type 2B protein-coding 13-PTNLD9-TUMOR_peak_8116 chr10 99369116 99369342 + 8.92315 NA intron (NM_001134670, intron 2 of 2) intron (NM_001134670, intron 2 of 2) 14254 NR_049868 100847017 NR_049868 miRBase:MI0019289 MIR5692C2 - microRNA 5692c-2 ncRNA 13-PTNLD9-TUMOR_peak_39848 chr4 170192134 170192410 + 8.92315 NA promoter-TSS (NM_020870) promoter-TSS (NM_020870) -23 NM_020870 57630 Hs.301804 NM_020870 HPRD:15335 SH3RF1 POSH|RNF142|SH3MD2 SH3 domain containing ring finger 1 protein-coding 13-PTNLD9-TUMOR_peak_51663 chr8 117560611 117560722 + 8.92315 NA Intergenic Intergenic 207396 NM_003756 8667 Hs.492599 NM_003756 EIF3H EIF3S3|eIF3-gamma|eIF3-p40 eukaryotic translation initiation factor 3, subunit H protein-coding 13-PTNLD9-TUMOR_peak_13034 chr12 57506088 57506267 + 8.91398 NA promoter-TSS (NM_001178078) promoter-TSS (NM_001178078) -981 NM_001178078 6778 Hs.524518 NM_003153 HPRD:03302 STAT6 D12S1644|IL-4-STAT|STAT6B|STAT6C signal transducer and activator of transcription 6, interleukin-4 induced protein-coding 13-PTNLD9-TUMOR_peak_34349 chr3 42693411 42693524 + 8.91398 NA intron (NR_125400, intron 1 of 2) intron (NR_125400, intron 1 of 2) -1709 NM_145166 92999 Hs.409561 NM_145166 ZBTB47 ZNF651 zinc finger and BTB domain containing 47 protein-coding 13-PTNLD9-TUMOR_peak_43846 chr6 13362661 13363000 + 8.91398 NA TTS (NM_018988) TTS (NM_018988) -34015 NM_001258457 51256 Hs.484678 NM_016495 HPRD:18165 TBC1D7 MGCPH|PIG51|TBC7 TBC1 domain family, member 7 protein-coding 13-PTNLD9-TUMOR_peak_51922 chr8 126614940 126615052 + 8.90996 NA Intergenic MIR3|SINE|MIR 170545 NM_001282985 10221 Hs.444947 NM_025195 HPRD:09863 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 13-PTNLD9-TUMOR_peak_29258 chr2 182068288 182068446 + 8.90841 NA Intergenic ERVL-B4-int|LTR|ERVL 102012 NR_039637 100616213 NR_039637 miRBase:MI0016778 MIR4437 - microRNA 4437 ncRNA 13-PTNLD9-TUMOR_peak_48372 chr7 95808059 95808180 + 8.90841 NA intron (NR_027662, intron 10 of 16) intron (NR_027662, intron 10 of 16) 40949 NR_030322 693176 NR_030322 MIR591 MIRN591|hsa-mir-591 microRNA 591 ncRNA 13-PTNLD9-TUMOR_peak_17604 chr15 72495875 72496019 + 8.90841 NA intron (NM_182470, intron 8 of 10) intron (NM_182470, intron 8 of 10) -5811 NM_001012642 196996 Hs.596332 NM_001012642 HPRD:13161 GRAMD2 - GRAM domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_29906 chr2 223824136 223824358 + 8.90841 NA Intergenic LTR16A2|LTR|ERVL -92401 NM_080671 23704 Hs.348522 NM_080671 HPRD:09689 KCNE4 MIRP3 potassium voltage-gated channel, Isk-related family, member 4 protein-coding 13-PTNLD9-TUMOR_peak_36708 chr3 170873051 170873200 + 8.90841 NA intron (NM_001161565, intron 12 of 30) intron (NM_001161565, intron 12 of 30) -48577 NR_030295 693154 NR_030295 MIR569 MIRN569|hsa-mir-569 microRNA 569 ncRNA 13-PTNLD9-TUMOR_peak_28245 chr2 120441863 120441967 + 8.90841 NA Intergenic Intergenic 5172 NM_001105199 80775 Hs.439991 NM_030577 HPRD:14409 TMEM177 - transmembrane protein 177 protein-coding 13-PTNLD9-TUMOR_peak_18453 chr16 9369369 9369488 + 8.90841 NA Intergenic Intergenic 40654 NR_036166 100422920 NR_036166 miRBase:MI0014244 MIR548X - microRNA 548x ncRNA 13-PTNLD9-TUMOR_peak_42633 chr5 149838519 149838624 + 8.90841 NA Intergenic Intergenic -9252 NM_001025071 6208 Hs.744846 NM_005617 HPRD:00562 RPS14 EMTB|S14 ribosomal protein S14 protein-coding 13-PTNLD9-TUMOR_peak_12867 chr12 53319982 53320361 + 8.90841 NA promoter-TSS (NM_001256282) promoter-TSS (NM_001256282) 82 NM_001256282 3856 Hs.533782 NM_002273 HPRD:01015 KRT8 CARD2|CK-8|CK8|CYK8|K2C8|K8|KO keratin 8 protein-coding 13-PTNLD9-TUMOR_peak_1013 chr1 33249663 33249816 + 8.90841 NA intron (NM_003680, intron 8 of 12) AluJo|SINE|Alu 18504 NM_001198972 57648 Hs.591502 NM_020888 ENSG00000162522 KIAA1522 - KIAA1522 protein-coding 13-PTNLD9-TUMOR_peak_10308 chr11 66420739 66420928 + 8.90841 NA intron (NM_001198844, intron 2 of 2) Tigger2a|DNA|TcMar-Tigger 14745 NM_002896 5936 Hs.523822 NM_002896 HPRD:03982 RBM4 LARK|RBM4A|ZCCHC21|ZCRB3A RNA binding motif protein 4 protein-coding 13-PTNLD9-TUMOR_peak_13143 chr12 64493320 64493434 + 8.90841 NA intron (NM_020762, intron 15 of 21) intron (NM_020762, intron 15 of 21) 122699 NM_001300940 144577 Hs.444671 NM_152440 HPRD:08727 C12orf66 - chromosome 12 open reading frame 66 protein-coding 13-PTNLD9-TUMOR_peak_35343 chr3 111593458 111593589 + 8.90841 NA intron (NM_001134439, intron 1 of 17) MLT1I|LTR|ERVL-MaLR 14955 NM_001134439 90102 Hs.603252 NM_145753 HPRD:06611 PHLDB2 LL5b|LL5beta pleckstrin homology-like domain, family B, member 2 protein-coding 13-PTNLD9-TUMOR_peak_1815 chr1 53865244 53865408 + 8.90841 NA Intergenic LTR13A|LTR|ERVK 40367 NR_002314 163742 Hs.99394 NR_002314 ENSG00000236253 SLC25A3P1 - solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_3238 chr1 144491760 144491885 + 8.90841 NA intron (NM_001278267, intron 52 of 130) CpG 120897 NR_003242 767846 Hs.657186 NR_003242 PFN1P2 C1orf152|COAS3 profilin 1 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_2583 chr1 95509043 95509182 + 8.90841 NA intron (NM_144988, intron 2 of 3) intron (NM_144988, intron 2 of 3) 29395 NM_144988 199857 Hs.408927 NM_144988 ALG14 - ALG14, UDP-N-acetylglucosaminyltransferase subunit protein-coding 13-PTNLD9-TUMOR_peak_26429 chr2 28613149 28613528 + 8.90034 NA intron (NR_103831, intron 1 of 1) CpG -2441 NM_005253 2355 Hs.220971 NM_005253 FOSL2 FRA2 FOS-like antigen 2 protein-coding 13-PTNLD9-TUMOR_peak_22589 chr18 10562157 10562420 + 8.88747 NA Intergenic Intergenic 36415 NM_003826 8774 Hs.464622 NM_003826 HPRD:04448 NAPG GAMMASNAP N-ethylmaleimide-sensitive factor attachment protein, gamma protein-coding 13-PTNLD9-TUMOR_peak_53029 chr9 33272292 33272452 + 8.88747 NA intron (NM_001195536, intron 5 of 6) intron (NM_001195536, intron 5 of 6) 7495 NM_016410 51510 Hs.635313 NM_016410 HPRD:15408 CHMP5 C9orf83|HSPC177|PNAS-2|SNF7DC2|Vps60 charged multivesicular body protein 5 protein-coding 13-PTNLD9-TUMOR_peak_22333 chr17 80297133 80297252 + 8.88747 NA Intergenic MER41G|LTR|ERV1 -5271 NM_003004 6398 Hs.558009 NM_003004 HPRD:04004 SECTM1 K12 secreted and transmembrane 1 protein-coding 13-PTNLD9-TUMOR_peak_35809 chr3 128152707 128152878 + 8.88747 NA Intergenic Intergenic -29645 NR_037890 285224 Hs.683815 NR_037890 ENSG00000242049 DNAJB8-AS1 - DNAJB8 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_5780 chr1 229928372 229928653 + 8.88747 NA Intergenic Intergenic 166531 NM_014777 9816 Hs.533628 NM_014777 HPRD:17178 URB2 KIAA0133|NET10|NPA2 URB2 ribosome biogenesis 2 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_15881 chr14 58216090 58216270 + 8.88747 NA intron (NM_001206920, intron 1 of 7) Charlie10|DNA|hAT-Charlie 116412 NM_001206920 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35, member F4 protein-coding 13-PTNLD9-TUMOR_peak_3632 chr1 151579025 151579187 + 8.88404 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -5556 NM_030918 81609 Hs.192326 NM_030918 HPRD:11591 SNX27 MRT1|MY014 sorting nexin family member 27 protein-coding 13-PTNLD9-TUMOR_peak_49201 chr7 134570867 134571007 + 8.88404 NA intron (NM_004342, intron 3 of 13) intron (NM_004342, intron 3 of 13) -5214 NM_033139 800 Hs.490203 NM_004342 HPRD:00251 CALD1 CDM|H-CAD|HCAD|L-CAD|LCAD|NAG22 caldesmon 1 protein-coding 13-PTNLD9-TUMOR_peak_8026 chr10 94351369 94351662 + 8.88374 NA Intergenic CpG -1310 NM_004523 3832 Hs.8878 NM_004523 HPRD:01023 KIF11 EG5|HKSP|KNSL1|MCLMR|TRIP5 kinesin family member 11 protein-coding 13-PTNLD9-TUMOR_peak_41515 chr5 91058392 91058532 + 8.88374 NA Intergenic L1PA3|LINE|L1 -379313 NM_020801 57561 Hs.24684 NM_020801 HPRD:09810 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_17074 chr15 40531335 40531636 + 8.88374 NA promoter-TSS (NM_020168) promoter-TSS (NM_020168) 193 NM_001276718 56924 Hs.513645 NM_020168 HPRD:06426 PAK6 PAK5 p21 protein (Cdc42/Rac)-activated kinase 6 protein-coding 13-PTNLD9-TUMOR_peak_7270 chr10 48179380 48179536 + 8.88374 NA Intergenic Intergenic -6381 NR_024495 642826 Hs.463017 NR_024495 BMS1P6 BMS1LP2|BMS1LP6|BMS1P2|bA302K17.2 BMS1 pseudogene 6 pseudo 13-PTNLD9-TUMOR_peak_50019 chr8 7768143 7768332 + 8.88374 NA Intergenic AluSz6|SINE|Alu -15622 NM_001193630 100132396 Hs.546691 NM_001193630 ENSG00000215356 ZNF705B - zinc finger protein 705B protein-coding 13-PTNLD9-TUMOR_peak_30280 chr20 2082774 2083029 + 8.88374 NA intron (NM_080836, intron 1 of 3) CpG 373 NM_080836 140901 Hs.100057 NM_080836 HPRD:11612 STK35 CLIK1|STK35L1 serine/threonine kinase 35 protein-coding 13-PTNLD9-TUMOR_peak_49171 chr7 133373770 133373971 + 8.88374 NA intron (NM_021807, intron 10 of 17) intron (NM_021807, intron 10 of 17) 135771 NR_120513 101928861 Hs.675747 NR_120513 LOC101928861 - uncharacterized LOC101928861 ncRNA 13-PTNLD9-TUMOR_peak_41913 chr5 124820481 124820657 + 8.88374 NA Intergenic Intergenic -8385 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LOC101927460 - uncharacterized LOC101927460 ncRNA 13-PTNLD9-TUMOR_peak_29976 chr2 230579837 230579975 + 8.88374 NA promoter-TSS (NM_139072) promoter-TSS (NM_139072) -620 NM_139072 92737 Hs.234074 NM_139072 HPRD:09531 DNER UNQ26|bet delta/notch-like EGF repeat containing protein-coding 13-PTNLD9-TUMOR_peak_38207 chr4 39460431 39460731 + 8.88374 NA promoter-TSS (NM_194451) promoter-TSS (NM_194451) -13 NM_000661 6133 Hs.412370 NM_000661 HPRD:04732 RPL9 L9|NPC-A-16 ribosomal protein L9 protein-coding 13-PTNLD9-TUMOR_peak_2823 chr1 110976569 110976685 + 8.88374 NA Intergenic Intergenic -17161 NM_032414 84432 Hs.514793 NM_032414 HPRD:06946 PROK1 EGVEGF|PK1|PRK1 prokineticin 1 protein-coding 13-PTNLD9-TUMOR_peak_36979 chr3 184069898 184070126 + 8.88374 NA intron (NM_001171088, intron 20 of 22) intron (NM_001171088, intron 20 of 22) 9427 NM_001171089 1181 Hs.436847 NM_004366 HPRD:02782 CLCN2 CIC-2|CLC2|ECA2|ECA3|EGI11|EGI3|EGMA|EJM6|EJM8|LKPAT|clC-2 chloride channel, voltage-sensitive 2 protein-coding 13-PTNLD9-TUMOR_peak_3530 chr1 149909420 149909538 + 8.88242 NA promoter-TSS (NM_001145862) promoter-TSS (NM_001145862) -688 NM_001145862 10903 Hs.425144 NM_006697 HPRD:16748 MTMR11 CRA myotubularin related protein 11 protein-coding 13-PTNLD9-TUMOR_peak_28012 chr2 110863785 110863926 + 8.88242 NA intron (NM_005434, intron 1 of 3) intron (NM_005434, intron 1 of 3) 10288 NM_005434 7851 Hs.185055 NM_005434 HPRD:15997 MALL BENE mal, T-cell differentiation protein-like protein-coding 13-PTNLD9-TUMOR_peak_36137 chr3 139256292 139256425 + 8.88127 NA intron (NM_001130992, intron 2 of 2) intron (NM_001130992, intron 2 of 2) 2313 NM_002899 5947 Hs.529571 NM_002899 HPRD:07036 RBP1 CRABP-I|CRBP|CRBP1|CRBPI|RBPC retinol binding protein 1, cellular protein-coding 13-PTNLD9-TUMOR_peak_7251 chr10 47599933 47600100 + 8.87778 NA intron (NR_103828, intron 2 of 2) L1PA17|LINE|L1 40828 NR_103827 100996567 Hs.546758 NR_103827 ANTXRLP1 - anthrax toxin receptor-like pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_42479 chr5 145235871 145236108 + 8.87778 NA Intergenic LTR33A|LTR|ERVL 16542 NM_001080516 643226 Hs.570895 NM_001080516 ENSG00000204928 GRXCR2 DFNB101 glutaredoxin, cysteine rich 2 protein-coding 13-PTNLD9-TUMOR_peak_50674 chr8 39749674 39749774 + 8.87778 NA Intergenic Intergenic -21604 NM_002164 3620 Hs.840 NM_002164 IDO1 IDO|IDO-1|INDO indoleamine 2,3-dioxygenase 1 protein-coding 13-PTNLD9-TUMOR_peak_12120 chr12 10590306 10590535 + 8.87778 NA Intergenic Intergenic -1828 NM_002260 3822 Hs.591157 NM_002260 HPRD:04202 KLRC2 CD159c|NKG2-C|NKG2C killer cell lectin-like receptor subfamily C, member 2 protein-coding 13-PTNLD9-TUMOR_peak_26065 chr2 9833357 9833563 + 8.87778 NA Intergenic Intergenic -62276 NM_006826 10971 Hs.74405 NM_006826 HPRD:00886 YWHAQ 14-3-3|1C5|HS1 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta protein-coding 13-PTNLD9-TUMOR_peak_11323 chr11 116802465 116802646 + 8.87778 NA intron (NM_025164, intron 3 of 23) intron (NM_025164, intron 3 of 23) -94217 NM_000039 335 Hs.93194 NM_000039 HPRD:02517 APOA1 - apolipoprotein A-I protein-coding 13-PTNLD9-TUMOR_peak_36745 chr3 172277955 172278084 + 8.87778 NA Intergenic Intergenic -36722 NM_001190942 8743 Hs.478275 NM_003810 HPRD:04670 TNFSF10 APO2L|Apo-2L|CD253|TL2|TRAIL tumor necrosis factor (ligand) superfamily, member 10 protein-coding 13-PTNLD9-TUMOR_peak_21316 chr17 45763884 45764039 + 8.87778 NA Intergenic Intergenic -8669 NM_014726 9755 Hs.94790 NM_014726 HPRD:12239 TBKBP1 ProSAPiP2|SINTBAD TBK1 binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_43407 chr6 1183562 1183751 + 8.87778 NA Intergenic Intergenic -82089 NR_027115 285768 Hs.209463 NR_027115 LOC285768 - uncharacterized LOC285768 ncRNA 13-PTNLD9-TUMOR_peak_19580 chr16 67318801 67319029 + 8.87778 NA exon (NM_001129727, exon 14 of 23) exon (NM_001129727, exon 14 of 23) 5423 NM_001129731 25894 Hs.188781 NM_015432 HPRD:10890 PLEKHG4 ARHGEF44|PRTPHN1|SCA4 pleckstrin homology domain containing, family G (with RhoGef domain) member 4 protein-coding 13-PTNLD9-TUMOR_peak_17711 chr15 77376245 77376388 + 8.87778 NA Intergenic Intergenic -12746 NM_198902 10099 Hs.744863 NM_005724 HPRD:15512 TSPAN3 TM4-A|TM4SF8|TSPAN-3 tetraspanin 3 protein-coding 13-PTNLD9-TUMOR_peak_6542 chr10 14695722 14695881 + 8.87778 NA intron (NM_001282695, intron 2 of 5) intron (NM_001282695, intron 2 of 5) -49384 NM_001282696 83641 Hs.446315 NM_031453 HPRD:12575 FAM107B C10orf45 family with sequence similarity 107, member B protein-coding 13-PTNLD9-TUMOR_peak_9405 chr11 30428976 30429129 + 8.87778 NA intron (NM_001145399, intron 6 of 6) intron (NM_001145399, intron 6 of 6) 84403 NM_152316 120534 Hs.502208 NM_152316 ARL14EP ARF7EP|C11orf46|dJ299F11.1 ADP-ribosylation factor-like 14 effector protein protein-coding 13-PTNLD9-TUMOR_peak_3243 chr1 144534120 144534363 + 8.87778 NA intron (NM_001278267, intron 52 of 130) intron (NM_001278267, intron 52 of 130) 78478 NR_003242 767846 Hs.657186 NR_003242 PFN1P2 C1orf152|COAS3 profilin 1 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_50729 chr8 42029300 42029537 + 8.87778 NA TTS (NM_001134296) TTS (NM_001134296) 18954 NM_006803 10947 Hs.654529 NM_006803 HPRD:09801 AP3M2 AP47B|CLA20|P47B adaptor-related protein complex 3, mu 2 subunit protein-coding 13-PTNLD9-TUMOR_peak_21634 chr17 57087368 57087534 + 8.87778 NA intron (NM_001005207, intron 22 of 24) intron (NM_001005207, intron 22 of 24) 96815 NM_015294 4591 Hs.579079 NM_015294 HPRD:05463 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 13-PTNLD9-TUMOR_peak_33511 chr22 50683426 50683615 + 8.87778 NA promoter-TSS (NM_020461) promoter-TSS (NM_020461) -120 NM_020461 85378 Hs.336431 NM_020461 HPRD:15589 TUBGCP6 GCP-6|GCP6|MCCRP|MCPHCR tubulin, gamma complex associated protein 6 protein-coding 13-PTNLD9-TUMOR_peak_49219 chr7 134939037 134939200 + 8.87479 NA intron (NM_182489, intron 7 of 8) intron (NM_182489, intron 7 of 8) 22387 NM_182489 346673 Hs.592279 NM_182489 HPRD:18123 STRA8 - stimulated by retinoic acid 8 protein-coding 13-PTNLD9-TUMOR_peak_41152 chr5 68857052 68857310 + 8.87479 NA intron (NM_001098728, intron 1 of 15) AluSz|SINE|Alu 1107 NM_001042490 730394 Hs.422901 NM_001042490 GTF2H2C_2 GTF2H2D GTF2H2 family member C, copy 2 protein-coding 13-PTNLD9-TUMOR_peak_16196 chr14 71130675 71130883 + 8.87479 NA intron (NM_015351, intron 1 of 2) MIRb|SINE|MIR 22275 NM_015351 23508 Hs.79170 NM_015351 ENSG00000133985 TTC9 TTC9A tetratricopeptide repeat domain 9 protein-coding 13-PTNLD9-TUMOR_peak_48973 chr7 128050328 128050622 + 8.87213 NA promoter-TSS (NM_000883) promoter-TSS (NM_000883) -439 NM_001142576 3614 Hs.654401 NM_000883 HPRD:08853 IMPDH1 IMPD|IMPD1|LCA11|RP10|sWSS2608 IMP (inosine 5'-monophosphate) dehydrogenase 1 protein-coding 13-PTNLD9-TUMOR_peak_33820 chr3 12996736 12996859 + 8.86467 NA intron (NM_001134382, intron 1 of 14) intron (NM_001134382, intron 1 of 14) 12401 NM_014869 9922 Hs.475506 NM_014869 HPRD:11052 IQSEC1 ARF-GEP100|ARFGEP100|BRAG2|GEP100 IQ motif and Sec7 domain 1 protein-coding 13-PTNLD9-TUMOR_peak_28482 chr2 132736845 132737001 + 8.86467 NA Intergenic L1PA15-16|LINE|L1 -177689 NM_214461 408029 Hs.145567 NM_214461 HPRD:14664 C2orf27B - chromosome 2 open reading frame 27B protein-coding 13-PTNLD9-TUMOR_peak_8025 chr10 94333559 94333937 + 8.86467 NA exon (NM_004969, exon 1 of 25) exon (NM_004969, exon 1 of 25) 104 NM_004969 3416 Hs.500546 NM_004969 HPRD:00894 IDE INSULYSIN insulin-degrading enzyme protein-coding 13-PTNLD9-TUMOR_peak_47816 chr7 70703037 70703185 + 8.86467 NA intron (NM_022479, intron 1 of 10) LTR79|LTR|ERVL -69549 NR_037479 100500920 NR_037479 MIR3914-2 - microRNA 3914-2 ncRNA 13-PTNLD9-TUMOR_peak_32191 chr21 35222233 35222419 + 8.86467 NA intron (NM_003024, intron 29 of 39) intron (NM_003024, intron 29 of 39) 65832 NM_001697 539 Hs.409140 NM_001697 HPRD:02899 ATP5O ATPO|OSCP ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit protein-coding 13-PTNLD9-TUMOR_peak_4291 chr1 167026601 167026701 + 8.86467 NA intron (NM_005814, intron 4 of 6) intron (NM_005814, intron 4 of 6) 33217 NM_005814 10223 Hs.651244 NM_005814 HPRD:03704 GPA33 A33 glycoprotein A33 (transmembrane) protein-coding 13-PTNLD9-TUMOR_peak_50203 chr8 19518776 19518977 + 8.86467 NA intron (NR_024040, intron 1 of 9) intron (NR_024040, intron 1 of 9) 21218 NM_018371 55790 Hs.613729 NM_018371 HPRD:13114 CSGALNACT1 CSGalNAcT-1|ChGn|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_5640 chr1 226354170 226354357 + 8.86467 NA intron (NM_022735, intron 1 of 7) AluJb|SINE|Alu 20160 NM_022735 64746 Hs.520207 NM_022735 HPRD:08432 ACBD3 GCP60|GOCAP1|GOLPH1|PAP7 acyl-CoA binding domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_8333 chr10 112241713 112242072 + 8.86467 NA Intergenic L2a|LINE|L2 -15733 NM_004419 1847 Hs.2128 NM_004419 HPRD:04349 DUSP5 DUSP|HVH3 dual specificity phosphatase 5 protein-coding 13-PTNLD9-TUMOR_peak_33461 chr22 46804522 46804723 + 8.86467 NA intron (NM_014246, intron 9 of 34) intron (NM_014246, intron 9 of 34) 73324 NM_001282783 55687 Hs.439524 NM_018006 HPRD:15571 TRMU MTO2|MTU1|TRMT|TRMT1|TRNT1 tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase protein-coding 13-PTNLD9-TUMOR_peak_32270 chr21 38160472 38160621 + 8.86467 NA intron (NM_001242785, intron 7 of 11) intron (NM_001242785, intron 7 of 11) 88555 NM_009586 6493 Hs.146186 NM_005069 HPRD:02935 SIM2 HMC13F06|HMC29C01|SIM|bHLHe15 single-minded family bHLH transcription factor 2 protein-coding 13-PTNLD9-TUMOR_peak_34492 chr3 48343483 48343639 + 8.86467 NA promoter-TSS (NM_005793) promoter-TSS (NM_005793) -713 NM_005793 10201 Hs.465558 NM_005793 HPRD:09219 NME6 IPIA-ALPHA|NDK 6|NM23-H6 NME/NM23 nucleoside diphosphate kinase 6 protein-coding 13-PTNLD9-TUMOR_peak_48926 chr7 126987849 126988030 + 8.86467 NA Intergenic CpG 44828 NM_176814 168850 Hs.159006 NM_176814 HPRD:14112 ZNF800 - zinc finger protein 800 protein-coding 13-PTNLD9-TUMOR_peak_14175 chr12 123611179 123611279 + 8.86467 NA Intergenic Intergenic -16193 NM_001300801 57605 Hs.272759 NM_020845 HPRD:08335 PITPNM2 NIR-3|NIR3|RDGB2|RDGBA2 phosphatidylinositol transfer protein, membrane-associated 2 protein-coding 13-PTNLD9-TUMOR_peak_108 chr1 1891542 1891686 + 8.86467 NA intron (NM_001080484, intron 14 of 17) intron (NM_001080484, intron 14 of 17) -40874 NM_178545 339456 Hs.123423 NM_178545 HPRD:14166 TMEM52 - transmembrane protein 52 protein-coding 13-PTNLD9-TUMOR_peak_42681 chr5 150788335 150788619 + 8.86467 NA Intergenic Intergenic -38686 NM_078483 206358 Hs.269004 NM_078483 HPRD:07584 SLC36A1 Dct1|LYAAT1|PAT1|TRAMD3 solute carrier family 36 (proton/amino acid symporter), member 1 protein-coding 13-PTNLD9-TUMOR_peak_9589 chr11 39988036 39988150 + 8.86467 NA Intergenic HUERS-P2-int|LTR|ERV1 326587 NR_047674 57689 Hs.745123 NM_020929 HPRD:12303 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 13-PTNLD9-TUMOR_peak_45365 chr6 54587230 54587427 + 8.86467 NA Intergenic Intergenic -124241 NM_001010872 222584 Hs.152423 NM_001010872 FAM83B C6orf143 family with sequence similarity 83, member B protein-coding 13-PTNLD9-TUMOR_peak_44782 chr6 35570144 35570332 + 8.85488 NA intron (NM_001145775, intron 6 of 11) intron (NM_001145775, intron 6 of 11) 62328 NR_049873 100847048 NR_049873 miRBase:MI0019295 MIR5690 - microRNA 5690 ncRNA 13-PTNLD9-TUMOR_peak_49592 chr7 149484645 149484859 + 8.85488 NA intron (NM_198455, intron 24 of 109) intron (NM_198455, intron 24 of 109) 11621 NM_198455 23145 Hs.632022 NM_198455 SSPO - SCO-spondin protein-coding 13-PTNLD9-TUMOR_peak_12989 chr12 56520073 56520194 + 8.85488 NA Intergenic Intergenic -1853 NM_015292 23344 Hs.632729 NM_015292 HPRD:14367 ESYT1 FAM62A|MBC2 extended synaptotagmin-like protein 1 protein-coding 13-PTNLD9-TUMOR_peak_17388 chr15 60690765 60690933 + 8.85488 NA promoter-TSS (NM_001136015) promoter-TSS (NM_001136015) -664 NM_004039 302 Hs.511605 NM_004039 HPRD:01061 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 13-PTNLD9-TUMOR_peak_4321 chr1 168049004 168049239 + 8.85278 NA 3' UTR (NM_001267611, exon 6 of 6) 3' UTR (NM_001267611, exon 6 of 6) 56553 NM_001267612 23432 Hs.271809 NM_007369 HPRD:17070 GPR161 RE2 G protein-coupled receptor 161 protein-coding 13-PTNLD9-TUMOR_peak_2138 chr1 68213520 68213636 + 8.85278 NA intron (NM_018841, intron 2 of 3) intron (NM_018841, intron 2 of 3) 62718 NM_001924 1647 Hs.80409 NM_001924 HPRD:00528 GADD45A DDIT1|GADD45 growth arrest and DNA-damage-inducible, alpha protein-coding 13-PTNLD9-TUMOR_peak_47436 chr7 47597797 47597955 + 8.85278 NA intron (NM_022748, intron 1 of 30) intron (NM_022748, intron 1 of 30) 23866 NM_022748 64759 Hs.520814 NM_022748 ENSG00000136205 TNS3 TEM6|TENS1 tensin 3 protein-coding 13-PTNLD9-TUMOR_peak_11257 chr11 113534838 113535005 + 8.85278 NA Intergenic FordPrefect|DNA|hAT-Tip100 42174 NR_110047 80975 Hs.46720 NM_030770 HPRD:05995 TMPRSS5 SPINESIN transmembrane protease, serine 5 protein-coding 13-PTNLD9-TUMOR_peak_52808 chr9 16337416 16337624 + 8.85278 NA Intergenic MER5A1|DNA|hAT-Charlie -61209 NR_073471 100129385 Hs.586441 NM_001271829 ENSG00000205549 C9orf92 Em:AL513424.1 chromosome 9 open reading frame 92 protein-coding 13-PTNLD9-TUMOR_peak_2337 chr1 85993038 85993169 + 8.84975 NA intron (NM_001134445, intron 1 of 6) intron (NM_001134445, intron 1 of 6) 50943 NM_001134445 23576 Hs.713411 NM_012137 HPRD:09203 DDAH1 DDAH|HEL-S-16 dimethylarginine dimethylaminohydrolase 1 protein-coding 13-PTNLD9-TUMOR_peak_1020 chr1 33463049 33463198 + 8.84731 NA Intergenic MIRb|SINE|MIR -32709 NM_001127361 127544 Hs.591504 NM_153341 HPRD:13725 RNF19B IBRDC3|NKLAM ring finger protein 19B protein-coding 13-PTNLD9-TUMOR_peak_27716 chr2 96873996 96874169 + 8.84731 NA promoter-TSS (NR_046322) promoter-TSS (NR_046322) -72 NR_046322 285033 Hs.58648 NM_001037228 STARD7-AS1 - STARD7 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_3123 chr1 120925896 120926056 + 8.84731 NA TTS (NR_045213) TTS (NR_045213) 9968 NR_045213 2210 Hs.534956 NM_001004340 FCGR1B CD64b|IGFRB Fc fragment of IgG, high affinity Ib, receptor (CD64) protein-coding 13-PTNLD9-TUMOR_peak_6920 chr10 34988050 34988225 + 8.84605 NA intron (NM_001184791, intron 1 of 20) intron (NM_001184791, intron 1 of 20) 116116 NM_001184791 56288 Hs.131489 NM_019619 HPRD:05994 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 13-PTNLD9-TUMOR_peak_48999 chr7 128520209 128520350 + 8.84605 NA intron (NM_001135914, intron 31 of 36) intron (NM_001135914, intron 31 of 36) 13815 NM_001195150 100130705 Hs.641532 NM_001195150 LOC100130705 - uncharacterized LOC100130705 protein-coding 13-PTNLD9-TUMOR_peak_34761 chr3 57984396 57984563 + 8.84605 NA Intergenic Intergenic -9648 NM_001457 2317 Hs.476448 NM_001457 HPRD:04543 FLNB ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP filamin B, beta protein-coding 13-PTNLD9-TUMOR_peak_2625 chr1 100110838 100111070 + 8.84605 NA promoter-TSS (NM_017734) promoter-TSS (NM_017734) -477 NM_017734 54873 Hs.483993 NM_017734 HPRD:06673 PALMD C1orf11|PALML palmdelphin protein-coding 13-PTNLD9-TUMOR_peak_48172 chr7 82329336 82329500 + 8.84550 NA Intergenic MER41B|LTR|ERV1 -256387 NM_000722 781 Hs.282151 NM_000722 HPRD:00245 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium channel, voltage-dependent, alpha 2/delta subunit 1 protein-coding 13-PTNLD9-TUMOR_peak_34901 chr3 69129438 69129576 + 8.84550 NA promoter-TSS (NM_003968) promoter-TSS (NM_003968) 17 NM_198195 9039 Hs.154320 NM_003968 HPRD:04413 UBA3 NAE2|UBE1C|hUBA3 ubiquitin-like modifier activating enzyme 3 protein-coding 13-PTNLD9-TUMOR_peak_36585 chr3 159770561 159770839 + 8.84550 NA intron (NR_108088, intron 3 of 9) MER66D|LTR|ERV1 32264 NR_104132 730109 Hs.99333 NR_104132 LINC01100 - long intergenic non-protein coding RNA 1100 ncRNA 13-PTNLD9-TUMOR_peak_19834 chr16 79403873 79403972 + 8.84550 NA Intergenic Intergenic 230700 NM_005360 4094 Hs.134859 NM_005360 HPRD:01518 MAF CCA4|c-MAF v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog protein-coding 13-PTNLD9-TUMOR_peak_10992 chr11 95992769 95992903 + 8.84550 NA intron (NM_032427, intron 1 of 4) intron (NM_032427, intron 1 of 4) -81766 NR_036125 100422991 NR_036125 miRBase:MI0014197 MIR1260B - microRNA 1260b ncRNA 13-PTNLD9-TUMOR_peak_17563 chr15 70488200 70488401 + 8.84550 NA Intergenic Intergenic -98044 NM_001105192 7090 Hs.287362 NM_005078 HPRD:02558 TLE3 ESG|ESG3|GRG3|HsT18976 transducin-like enhancer of split 3 protein-coding 13-PTNLD9-TUMOR_peak_51902 chr8 126384207 126384366 + 8.84550 NA Intergenic AluSx|SINE|Alu -58277 NM_025195 10221 Hs.444947 NM_025195 HPRD:09863 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 13-PTNLD9-TUMOR_peak_19444 chr16 57625114 57625274 + 8.84550 NA Intergenic Intergenic -28411 NM_001290142 9289 Hs.513633 NM_005682 HPRD:06824 GPR56 BFPP|BPPR|TM7LN4|TM7XN1 G protein-coupled receptor 56 protein-coding 13-PTNLD9-TUMOR_peak_14047 chr12 120868875 120869040 + 8.84550 NA Intergenic AluSx|SINE|Alu -6936 NM_004373 1337 Hs.369624 NM_004373 HPRD:03644 COX6A1 COX6A|COX6AL cytochrome c oxidase subunit VIa polypeptide 1 protein-coding 13-PTNLD9-TUMOR_peak_8820 chr11 2554077 2554248 + 8.84550 NA intron (NM_181798, intron 2 of 15) CpG 71478 NM_181798 3784 Hs.95162 NM_000218 HPRD:06341 KCNQ1 ATFB1|ATFB3|JLNS1|KCNA8|KCNA9|KVLQT1|Kv1.9|Kv7.1|LQT|LQT1|RWS|SQT2|WRS potassium voltage-gated channel, KQT-like subfamily, member 1 protein-coding 13-PTNLD9-TUMOR_peak_36457 chr3 154689831 154690033 + 8.84550 NA Intergenic LTR54|LTR|ERV1 -107504 NM_000902 4311 Hs.307734 NM_000902 HPRD:00392 MME CALLA|CD10|NEP|SFE membrane metallo-endopeptidase protein-coding 13-PTNLD9-TUMOR_peak_27802 chr2 99528823 99528946 + 8.84550 NA intron (NM_207362, intron 1 of 9) intron (NM_207362, intron 1 of 9) 23800 NM_207362 343990 Hs.469398 NM_207362 HPRD:14620 KIAA1211L C2orf55 KIAA1211-like protein-coding 13-PTNLD9-TUMOR_peak_32130 chr21 33261514 33261667 + 8.84550 NA intron (NM_014586, intron 1 of 10) intron (NM_014586, intron 1 of 10) 15962 NM_014586 30811 Hs.109437 NM_014586 HPRD:09410 HUNK - hormonally up-regulated Neu-associated kinase protein-coding 13-PTNLD9-TUMOR_peak_46839 chr7 6629552 6629923 + 8.84550 NA promoter-TSS (NM_024067) promoter-TSS (NM_024067) -178 NM_024067 79034 Hs.487511 NM_024067 HPRD:12913 C7orf26 - chromosome 7 open reading frame 26 protein-coding 13-PTNLD9-TUMOR_peak_38945 chr4 100380144 100380508 + 8.84550 NA Intergenic Intergenic -23659 NM_000673 131 Hs.389 NM_000673 HPRD:02515 ADH7 ADH4 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide protein-coding 13-PTNLD9-TUMOR_peak_30998 chr20 37260313 37260526 + 8.84550 NA intron (NM_001164431, intron 5 of 14) intron (NM_001164431, intron 5 of 14) 29842 NM_001164431 343578 Hs.451997 NM_001164431 ENSG00000124143 ARHGAP40 C20orf95|dJ1100H13.4 Rho GTPase activating protein 40 protein-coding 13-PTNLD9-TUMOR_peak_31365 chr20 48100720 48101066 + 8.84550 NA Intergenic CpG -1712 NM_004975 3745 Hs.84244 NM_004975 KCNB1 DRK1|KV2.1|h-DRK1 potassium voltage-gated channel, Shab-related subfamily, member 1 protein-coding 13-PTNLD9-TUMOR_peak_3886 chr1 155827022 155827137 + 8.83527 NA promoter-TSS (NM_001282861) promoter-TSS (NM_001282861) 7 NM_001282860 54856 Hs.656361 NM_032292 HPRD:13370 GON4L GON-4|GON4|YARP gon-4-like (C. elegans) protein-coding 13-PTNLD9-TUMOR_peak_56275 chrX 100307013 100307191 + 8.82847 NA promoter-TSS (NM_001167972) promoter-TSS (NM_001167972) 3 NM_001167971 79979 Hs.496501 NM_024917 HPRD:06520 TRMT2B CXorf34|dJ341D10.3 tRNA methyltransferase 2 homolog B (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_38119 chr4 25622919 25623048 + 8.82847 NA Intergenic Intergenic -34452 NM_001177998 10568 Hs.479372 NM_006424 HPRD:07251 SLC34A2 NAPI-3B|NAPI-IIb|NPTIIb solute carrier family 34 (type II sodium/phosphate contransporter), member 2 protein-coding 13-PTNLD9-TUMOR_peak_23859 chr19 8674426 8674610 + 8.82847 NA intron (NM_030957, intron 1 of 25) CpG 1102 NM_030957 81794 Hs.657508 NM_030957 HPRD:07470 ADAMTS10 ADAM-TS10|ADAMTS-10|WMS|WMS1 ADAM metallopeptidase with thrombospondin type 1 motif, 10 protein-coding 13-PTNLD9-TUMOR_peak_22567 chr18 9905701 9905884 + 8.82847 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -8163 NM_194434 9218 Hs.165195 NM_003574 HPRD:09299 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP (vesicle-associated membrane protein)-associated protein A, 33kDa protein-coding 13-PTNLD9-TUMOR_peak_20660 chr17 20602364 20602579 + 8.82847 NA Intergenic Intergenic -13288 NR_073509 100287072 Hs.676308 NR_073509 LOC100287072 - ribosomal protein S6 kinase, 70kDa, polypeptide 1 pseudogene pseudo 13-PTNLD9-TUMOR_peak_20910 chr17 34924654 34924983 + 8.82847 NA intron (NM_024835, intron 6 of 13) AluSc5|SINE|Alu -23408 NM_024308 79154 Hs.462859 NM_024308 HPRD:08331 DHRS11 ARPG836|SDR24C1 dehydrogenase/reductase (SDR family) member 11 protein-coding 13-PTNLD9-TUMOR_peak_2498 chr1 94089530 94089714 + 8.82847 NA intron (NM_001261408, intron 5 of 13) intron (NM_001261408, intron 5 of 13) -9920 NM_001261410 8412 Hs.36958 NM_003567 HPRD:05268 BCAR3 NSP2|SH2D3B breast cancer anti-estrogen resistance 3 protein-coding 13-PTNLD9-TUMOR_peak_36200 chr3 141160334 141160432 + 8.82847 NA intron (NM_001080412, intron 7 of 7) intron (NM_001080412, intron 7 of 7) -45543 NM_006506 5922 Hs.98445 NM_006506 ENSG00000155903 RASA2 GAP1M RAS p21 protein activator 2 protein-coding 13-PTNLD9-TUMOR_peak_43903 chr6 15036975 15037126 + 8.82847 NA Intergenic Intergenic -209156 NM_004973 3720 Hs.269059 NM_004973 HPRD:03355 JARID2 JMJ jumonji, AT rich interactive domain 2 protein-coding 13-PTNLD9-TUMOR_peak_19648 chr16 69098130 69098362 + 8.82847 NA intron (NM_024562, intron 17 of 17) intron (NM_024562, intron 17 of 17) -41221 NM_001199280 3038 Hs.592069 NM_005329 HPRD:03889 HAS3 - hyaluronan synthase 3 protein-coding 13-PTNLD9-TUMOR_peak_29274 chr2 183195780 183195917 + 8.82847 NA intron (NM_001003683, intron 2 of 14) MIR|SINE|MIR -89058 NM_001258314 5136 Hs.191046 NM_005019 HPRD:01387 PDE1A CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A, calmodulin-dependent protein-coding 13-PTNLD9-TUMOR_peak_28228 chr2 119807774 119808186 + 8.82847 NA Intergenic L1PB1|LINE|L1 108235 NM_006770 8685 Hs.67726 NM_006770 HPRD:05337 MARCO SCARA2 macrophage receptor with collagenous structure protein-coding 13-PTNLD9-TUMOR_peak_30449 chr20 13393523 13393674 + 8.82847 NA intron (NM_017714, intron 13 of 13) MIRc|SINE|MIR -173264 NR_040043 100505536 Hs.665253 NR_040043 ISM1-AS1 - ISM1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_56701 chrX 153401025 153401158 + 8.82847 NA Intergenic Intergenic -8607 NM_020061 5956 Hs.247787 NM_020061 HPRD:02366 OPN1LW CBBM|CBP|COD5|RCP|ROP opsin 1 (cone pigments), long-wave-sensitive protein-coding 13-PTNLD9-TUMOR_peak_17921 chr15 88070776 88070906 + 8.82847 NA Intergenic MLT2F|LTR|ERVL -49319 NR_026869 145978 Hs.350808 NM_152454 HPRD:08101 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 13-PTNLD9-TUMOR_peak_47773 chr7 67204053 67204173 + 8.82847 NA Intergenic L1MB5|LINE|L1 -281127 NR_120514 102723427 Hs.583491 NR_120514 LOC102723427 - uncharacterized LOC102723427 ncRNA 13-PTNLD9-TUMOR_peak_36000 chr3 134030197 134030398 + 8.82627 NA Intergenic AluJo|SINE|Alu 56407 NR_106885 102466744 NR_106885 MIR6827 hsa-mir-6827 microRNA 6827 ncRNA 13-PTNLD9-TUMOR_peak_29567 chr2 202898668 202898938 + 8.82579 NA promoter-TSS (NM_003507) promoter-TSS (NM_003507) -507 NM_003507 8324 Hs.173859 NM_003507 HPRD:04560 FZD7 FzE3 frizzled class receptor 7 protein-coding 13-PTNLD9-TUMOR_peak_24286 chr19 16683744 16683862 + 8.82470 NA promoter-TSS (NM_024881) promoter-TSS (NM_024881) -610 NM_024881 79939 Hs.620596 NM_024881 HPRD:15373 SLC35E1 - solute carrier family 35, member E1 protein-coding 13-PTNLD9-TUMOR_peak_3221 chr1 144067140 144067263 + 8.82470 NA Intergenic Intergenic -79610 NM_001278267 100288142 Hs.445080 NM_001278267 ENSG00000203832 NBPF20 - neuroblastoma breakpoint family, member 20 protein-coding 13-PTNLD9-TUMOR_peak_10013 chr11 61467814 61467949 + 8.82464 NA intron (NM_006133, intron 1 of 19) intron (NM_006133, intron 1 of 19) 19976 NM_006133 747 Hs.241564 NM_006133 HPRD:07092 DAGLA C11orf11|DAGL(ALPHA)|DAGLALPHA|NSDDR diacylglycerol lipase, alpha protein-coding 13-PTNLD9-TUMOR_peak_19956 chr16 84907678 84907874 + 8.82157 NA intron (NM_031476, intron 11 of 14) intron (NM_031476, intron 11 of 14) 54189 NM_031476 83716 Hs.513779 NM_031476 HPRD:13186 CRISPLD2 CRISP11|LCRISP2 cysteine-rich secretory protein LCCL domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_18812 chr16 24537413 24537880 + 8.82157 NA Intergenic Intergenic -13262 NM_006910 5930 Hs.188553 NM_006910 HPRD:02964 RBBP6 MY038|P2P-R|PACT|RBQ-1|SNAMA retinoblastoma binding protein 6 protein-coding 13-PTNLD9-TUMOR_peak_31644 chr20 55376929 55377038 + 8.82157 NA Intergenic AluJb|SINE|Alu 172625 NM_003222 7022 Hs.473152 NM_003222 HPRD:03361 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma) protein-coding 13-PTNLD9-TUMOR_peak_9746 chr11 47945940 47946158 + 8.82157 NA Intergenic Intergenic -56061 NM_001098503 5795 Hs.318547 NM_002843 HPRD:02955 PTPRJ CD148|DEP1|HPTPeta|R-PTP-ETA|SCC1 protein tyrosine phosphatase, receptor type, J protein-coding 13-PTNLD9-TUMOR_peak_18486 chr16 10598274 10598575 + 8.82157 NA Intergenic MER4A|LTR|ERV1 75699 NR_045815 80063 Hs.513343 NM_024997 HPRD:16517 ATF7IP2 MCAF2 activating transcription factor 7 interacting protein 2 protein-coding 13-PTNLD9-TUMOR_peak_7524 chr10 65190195 65190393 + 8.82157 NA intron (NM_032776, intron 1 of 25) L1MB7|LINE|L1 -34695 NR_027182 84989 Hs.659950 NM_032903 ENSG00000272767 JMJD1C-AS1 - JMJD1C antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_24344 chr19 17877571 17877686 + 8.82157 NA intron (NM_015122, intron 7 of 28) CpG-13242 15342 NM_001161359 23149 Hs.96485 NM_015122 HPRD:16887 FCHO1 - FCH domain only 1 protein-coding 13-PTNLD9-TUMOR_peak_13676 chr12 105839464 105839571 + 8.82157 NA Intergenic Intergenic 115103 NM_001145199 387882 Hs.368938 NM_207376 HPRD:17368 C12orf75 AGD3|OCC-1|OCC1 chromosome 12 open reading frame 75 protein-coding 13-PTNLD9-TUMOR_peak_44650 chr6 33021111 33021253 + 8.82157 NA Intergenic HERVK22-int|LTR|ERVK 20272 NM_033554 3113 Hs.347270 NM_033554 HPRD:00835 HLA-DPA1 DP(W3)|DP(W4)|HLA-DP1A|HLADP|HLASB|PLT1 major histocompatibility complex, class II, DP alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_3990 chr1 157360643 157360787 + 8.82157 NA Intergenic Intergenic 161595 NM_031281 83416 Hs.415950 NM_031281 HPRD:16169 FCRL5 BXMAS1|CD307|CD307e|FCRH5|IRTA2|PRO820 Fc receptor-like 5 protein-coding 13-PTNLD9-TUMOR_peak_12651 chr12 46947322 46947423 + 8.82157 NA intron (NR_125380, intron 3 of 3) intron (NR_125380, intron 3 of 3) 169482 NR_125381 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 13-PTNLD9-TUMOR_peak_17979 chr15 91208873 91209120 + 8.82157 NA TTS (NR_120371) TTS (NR_120371) 5531 NR_120371 101929765 Hs.615348 NR_120371 ENSG00000245479 LOC101929765 - uncharacterized LOC101929765 ncRNA 13-PTNLD9-TUMOR_peak_2403 chr1 89591633 89591927 + 8.82157 NA promoter-TSS (NM_004120) promoter-TSS (NM_004120) 62 NM_004120 2634 Hs.386567 NM_004120 HPRD:02682 GBP2 - guanylate binding protein 2, interferon-inducible protein-coding 13-PTNLD9-TUMOR_peak_42687 chr5 150963742 150963903 + 8.82157 NA Intergenic Intergenic -15317 NM_001447 2196 Hs.591255 NM_001447 HPRD:05041 FAT2 CDHF8|CDHR9|HFAT2|MEGF1 FAT atypical cadherin 2 protein-coding 13-PTNLD9-TUMOR_peak_30658 chr20 25208040 25208146 + 8.82157 NA TTS (NM_001247) TTS (NM_001247) -20613 NM_002862 5834 Hs.368157 NM_002862 HPRD:00720 PYGB GPBB phosphorylase, glycogen; brain protein-coding 13-PTNLD9-TUMOR_peak_42536 chr5 147393950 147394136 + 8.82157 NA Intergenic Intergenic -49492 NM_006846 11005 Hs.331555 NM_006846 HPRD:05423 SPINK5 LEKTI|LETKI|NETS|NS|VAKTI serine peptidase inhibitor, Kazal type 5 protein-coding 13-PTNLD9-TUMOR_peak_28887 chr2 161094980 161095166 + 8.82157 NA Intergenic Intergenic 33333 NR_103775 100505984 Hs.729532 NR_103775 ENSG00000115221 LOC100505984 - uncharacterized LOC100505984 ncRNA 13-PTNLD9-TUMOR_peak_1305 chr1 40804456 40804610 + 8.82157 NA Intergenic Intergenic -21594 NM_001852 1298 Hs.418012 NM_001852 HPRD:00373 COL9A2 DJ39G22.4|EDM2|MED|STL5 collagen, type IX, alpha 2 protein-coding 13-PTNLD9-TUMOR_peak_36225 chr3 141928604 141928742 + 8.82157 NA intron (NR_033289, intron 3 of 16) intron (NR_033289, intron 3 of 16) 15776 NR_033289 256356 Hs.135904 NM_152776 HPRD:14612 GK5 - glycerol kinase 5 (putative) protein-coding 13-PTNLD9-TUMOR_peak_24830 chr19 37406881 37407015 + 8.82157 NA promoter-TSS (NM_001171979) promoter-TSS (NM_001171979) -25 NM_001171979 374899 Hs.720312 NM_001037232 ENSG00000185869 ZNF829 - zinc finger protein 829 protein-coding 13-PTNLD9-TUMOR_peak_31265 chr20 45903350 45903513 + 8.82157 NA intron (NM_001281772, intron 13 of 23) intron (NM_001281772, intron 13 of 23) -43815 NR_024594 100131496 Hs.662547 NR_024594 ENSG00000267882 LOC100131496 - uncharacterized LOC100131496 ncRNA 13-PTNLD9-TUMOR_peak_55705 chrX 34675689 34675785 + 8.82157 NA promoter-TSS (NM_031442) promoter-TSS (NM_031442) -332 NM_031442 83604 Hs.8769 NM_031442 HPRD:06741 TMEM47 BCMP1|TM4SF10 transmembrane protein 47 protein-coding 13-PTNLD9-TUMOR_peak_30822 chr20 32717608 32717710 + 8.82157 NA Intergenic HERVK-int|LTR|ERVK -17574 NM_003908 8894 Hs.429180 NM_003908 HPRD:04882 EIF2S2 EIF2|EIF2B|EIF2beta|PPP1R67|eIF-2-beta eukaryotic translation initiation factor 2, subunit 2 beta, 38kDa protein-coding 13-PTNLD9-TUMOR_peak_9941 chr11 59328719 59328926 + 8.82065 NA Intergenic MER34A1|LTR|ERV1 33809 NR_036120 100422880 NR_036120 MIR3162 - microRNA 3162 ncRNA 13-PTNLD9-TUMOR_peak_38148 chr4 26859198 26859375 + 8.82065 NA Intergenic CpG -3027 NM_001169117 57620 Hs.744950 NM_020860 HPRD:11609 STIM2 - stromal interaction molecule 2 protein-coding 13-PTNLD9-TUMOR_peak_42446 chr5 142628920 142629047 + 8.81830 NA Intergenic Intergenic 154271 NM_000176 2908 Hs.122926 NM_000176 HPRD:00679 NR3C1 GCCR|GCR|GR|GRL nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) protein-coding 13-PTNLD9-TUMOR_peak_51951 chr8 127640632 127640770 + 8.81830 NA Intergenic Intergenic -69990 NM_174911 157638 Hs.741352 NM_174911 HPRD:11403 FAM84B BCMP101|NSE2 family with sequence similarity 84, member B protein-coding 13-PTNLD9-TUMOR_peak_10544 chr11 71856199 71856622 + 8.81830 NA Intergenic MER84-int|LTR|ERV1 9639 NM_000804 2352 Hs.352 NM_000804 HPRD:03918 FOLR3 FR-G|FR-gamma|gamma-hFR folate receptor 3 (gamma) protein-coding 13-PTNLD9-TUMOR_peak_6106 chr1 244087606 244087757 + 8.81463 NA intron (NR_033883, intron 1 of 11) LTR78|LTR|ERV1 6977 NR_033883 339529 Hs.209374 NR_033883 ENSG00000226828 LOC339529 - uncharacterized LOC339529 ncRNA 13-PTNLD9-TUMOR_peak_21444 chr17 48226137 48226288 + 8.81463 NA intron (NM_032595, intron 1 of 9) intron (NM_032595, intron 1 of 9) 1666 NM_032595 84687 Hs.514323 NM_032595 HPRD:04506 PPP1R9B PPP1R6|PPP1R9|SPINO|Spn protein phosphatase 1, regulatory subunit 9B protein-coding 13-PTNLD9-TUMOR_peak_48583 chr7 100895298 100895428 + 8.81463 NA Intergenic CpG -6992 NM_016068 51024 Hs.423968 NM_016068 HPRD:12352 FIS1 TTC11 fission 1 (mitochondrial outer membrane) homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_29815 chr2 218794497 218794634 + 8.81463 NA intron (NM_022648, intron 1 of 32) L2|LINE|L2 14231 NM_022648 7145 Hs.471381 NM_022648 HPRD:02512 TNS1 MST091|MST122|MST127|MSTP122|MSTP127|MXRA6|PPP1R155|TNS tensin 1 protein-coding 13-PTNLD9-TUMOR_peak_10659 chr11 75294354 75294495 + 8.81463 NA Intergenic CpG 21323 NM_001235 871 Hs.596449 NM_001235 HPRD:02968 SERPINH1 AsTP3|CBP1|CBP2|HSP47|OI10|PPROM|RA-A47|SERPINH2|gp46 serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1) protein-coding 13-PTNLD9-TUMOR_peak_2751 chr1 109782176 109782303 + 8.81224 NA Intergenic Intergenic -10402 NM_001408 1952 Hs.57652 NM_001408 HPRD:05040 CELSR2 CDHF10|EGFL2|Flamingo1|MEGF3 cadherin, EGF LAG seven-pass G-type receptor 2 protein-coding 13-PTNLD9-TUMOR_peak_12811 chr12 52585737 52585907 + 8.81224 NA promoter-TSS (NM_001081492) promoter-TSS (NM_001081492) -38 NM_001081492 144501 Hs.140978 NM_182507 HPRD:14068 KRT80 KB20 keratin 80 protein-coding 13-PTNLD9-TUMOR_peak_12058 chr12 8013108 8013382 + 8.80689 NA intron (NM_001286237, intron 1 of 9) intron (NM_001286237, intron 1 of 9) 12390 NM_153449 144195 Hs.655169 NM_153449 HPRD:11573 SLC2A14 GLUT14|SLC2A3P3 solute carrier family 2 (facilitated glucose transporter), member 14 protein-coding 13-PTNLD9-TUMOR_peak_23910 chr19 9963992 9964093 + 8.80689 NA TTS (NM_058164) TTS (NM_058164) 18159 NR_038422 5300 Hs.465849 NM_006221 HPRD:03031 PIN1 DOD|UBL5 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 protein-coding 13-PTNLD9-TUMOR_peak_54190 chr9 101026172 101026288 + 8.80689 NA Intergenic Intergenic -8227 NM_001267571 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family, member 2 protein-coding 13-PTNLD9-TUMOR_peak_21854 chr17 65995578 65995695 + 8.80689 NA Intergenic MamRep605|Unknown|Unknown -5871 NM_181656 284018 Hs.90790 NM_181655 HPRD:14151 C17orf58 - chromosome 17 open reading frame 58 protein-coding 13-PTNLD9-TUMOR_peak_43049 chr5 172370373 172370609 + 8.80689 NA intron (NM_001031711, intron 9 of 9) intron (NM_001031711, intron 9 of 9) 15287 NR_026683 100268168 Hs.519766 NR_026682 ENSG00000204758 LOC100268168 - uncharacterized LOC100268168 ncRNA 13-PTNLD9-TUMOR_peak_16372 chr14 81636750 81637082 + 8.80689 NA Intergenic L1P4a|LINE|L1 32262 NR_003021 677845 Hs.693251 NR_003021 SNORA79 ACA65 small nucleolar RNA, H/ACA box 79 snoRNA 13-PTNLD9-TUMOR_peak_33148 chr22 32601026 32601163 + 8.80689 NA promoter-TSS (NM_001159545) promoter-TSS (NM_001159545) -376 NM_001159545 10739 Hs.157427 NM_006605 HPRD:09338 RFPL2 RNF79 ret finger protein-like 2 protein-coding 13-PTNLD9-TUMOR_peak_19269 chr16 48278100 48278629 + 8.80689 NA exon (NM_031490, exon 1 of 15) exon (NM_031490, exon 1 of 15) 286 NM_001300948 83752 Hs.295923 NM_031490 LONP2 LONP|LONPL lon peptidase 2, peroxisomal protein-coding 13-PTNLD9-TUMOR_peak_34842 chr3 64330636 64330874 + 8.80689 NA Intergenic Intergenic -119624 NM_198859 166336 Hs.148105 NM_198859 HPRD:16342 PRICKLE2 EPM5 prickle homolog 2 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_30537 chr20 18638235 18638438 + 8.80689 NA intron (NM_080820, intron 4 of 5) MLT1F|LTR|ERVL-MaLR 41016 NR_109955 101929526 Hs.639402 NR_109955 ENSG00000233993 LOC101929526 - uncharacterized LOC101929526 ncRNA 13-PTNLD9-TUMOR_peak_46828 chr7 6438760 6438911 + 8.80689 NA intron (NM_018890, intron 4 of 6) intron (NM_018890, intron 4 of 6) 24709 NM_018890 5879 Hs.413812 NM_006908 HPRD:03627 RAC1 Rac-1|TC-25|p21-Rac1 ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1) protein-coding 13-PTNLD9-TUMOR_peak_30650 chr20 25033720 25034044 + 8.79978 NA intron (NM_001252677, intron 1 of 11) AluJo|SINE|Alu 4936 NM_001252675 84532 Hs.529353 NM_032501 HPRD:12413 ACSS1 ACAS2L|ACECS1|AceCS2L acyl-CoA synthetase short-chain family member 1 protein-coding 13-PTNLD9-TUMOR_peak_51398 chr8 101429431 101429626 + 8.79978 NA Intergenic Intergenic 34537 NR_039681 100616451 NR_039681 miRBase:MI0016822 MIR4471 - microRNA 4471 ncRNA 13-PTNLD9-TUMOR_peak_1286 chr1 40423054 40423225 + 8.79978 NA intron (NR_109896, intron 2 of 11) intron (NR_109896, intron 2 of 11) 2355 NM_032793 84879 Hs.655177 NM_032793 HPRD:07861 MFSD2A MFSD2|NLS1 major facilitator superfamily domain containing 2A protein-coding 13-PTNLD9-TUMOR_peak_52080 chr8 131455564 131455869 + 8.79688 NA 5' UTR (NM_001247996, exon 1 of 31) 5' UTR (NM_001247996, exon 1 of 31) 190 NM_001247996 50807 Hs.655552 NM_018482 HPRD:05809 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 13-PTNLD9-TUMOR_peak_11909 chr12 5367740 5367998 + 8.79688 NA Intergenic MLT2B4|LTR|ERVL -15552 NR_120477 101929584 Hs.436529 NR_120476 ENSG00000256115 LOC101929584 - uncharacterized LOC101929584 ncRNA 13-PTNLD9-TUMOR_peak_558 chr1 17274971 17275256 + 8.79688 NA intron (NM_014675, intron 18 of 36) intron (NM_014675, intron 18 of 36) 26668 NM_014675 9696 Hs.309403 NM_014675 HPRD:16758 CROCC ROLT ciliary rootlet coiled-coil, rootletin protein-coding 13-PTNLD9-TUMOR_peak_2194 chr1 72750554 72750725 + 8.79688 NA Intergenic Intergenic -2362 NM_173808 257194 Hs.146542 NM_173808 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 13-PTNLD9-TUMOR_peak_1140 chr1 36690439 36690607 + 8.78830 NA intron (NM_005119, intron 1 of 11) intron (NM_005119, intron 1 of 11) 506 NM_005119 9967 Hs.744057 NM_005119 HPRD:07543 THRAP3 TRAP150 thyroid hormone receptor associated protein 3 protein-coding 13-PTNLD9-TUMOR_peak_84 chr1 1368659 1368923 + 8.78332 NA Intergenic Intergenic -2112 NM_199121 64856 Hs.449009 NM_022834 HPRD:18292 VWA1 WARP von Willebrand factor A domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_6079 chr1 242113811 242113981 + 8.78303 NA Intergenic Intergenic -7173 NM_001290693 441925 Hs.731347 NM_001290693 BECN1P1 BECN1L1|BECN2 beclin 1, autophagy related, pseudogene 1 protein-coding 13-PTNLD9-TUMOR_peak_54518 chr9 116860445 116860725 + 8.78303 NA intron (NM_138424, intron 1 of 15) CpG 752 NM_138424 113220 Hs.28149 NM_138424 HPRD:13914 KIF12 - kinesin family member 12 protein-coding 13-PTNLD9-TUMOR_peak_23844 chr19 8417309 8417435 + 8.78303 NA Intergenic Intergenic -9226 NM_198471 256949 Hs.745036 NM_198471 HPRD:13520 KANK3 ANKRD47 KN motif and ankyrin repeat domains 3 protein-coding 13-PTNLD9-TUMOR_peak_26842 chr2 47212792 47212926 + 8.78303 NA intron (NM_001288955, intron 5 of 18) intron (NM_001288955, intron 5 of 18) -43865 NM_001171511 90411 Hs.662152 NM_139279 HPRD:09693 MCFD2 F5F8D|F5F8D2|LMAN1IP|SDNSF multiple coagulation factor deficiency 2 protein-coding 13-PTNLD9-TUMOR_peak_42269 chr5 138861795 138862009 + 8.78303 NA intron (NM_198282, intron 1 of 7) intron (NM_198282, intron 1 of 7) 441 NM_198282 340061 Hs.379754 NM_198282 TMEM173 ERIS|MITA|MPYS|NET23|SAVI|STING transmembrane protein 173 protein-coding 13-PTNLD9-TUMOR_peak_50939 chr8 54647519 54647656 + 8.78303 NA intron (NM_213619, intron 12 of 12) HERVE_a-int|LTR|ERV1 108015 NM_213620 51606 Hs.491737 NM_015941 HPRD:10591 ATP6V1H MSTP042|NBP1|SFD|SFDalpha|SFDbeta|VMA13 ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H protein-coding 13-PTNLD9-TUMOR_peak_3617 chr1 151467235 151467544 + 8.78303 NA Intergenic Intergenic -16473 NM_020770 57530 Hs.591464 NM_020770 HPRD:10827 CGN - cingulin protein-coding 13-PTNLD9-TUMOR_peak_12976 chr12 56365927 56366155 + 8.78302 NA 3' UTR (NM_052827, exon 6 of 6) 3' UTR (NM_052827, exon 6 of 6) -1656 NM_001252036 5869 Hs.157659 NM_002868 HPRD:01544 RAB5B - RAB5B, member RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_635 chr1 22257715 22257921 + 8.78264 NA intron (NM_001291860, intron 1 of 96) intron (NM_001291860, intron 1 of 96) 5972 NM_001291860 3339 Hs.562227 NM_005529 HPRD:00804 HSPG2 HSPG|PLC|PRCAN|SJA|SJS|SJS1 heparan sulfate proteoglycan 2 protein-coding 13-PTNLD9-TUMOR_peak_12817 chr12 52607401 52607512 + 8.78264 NA intron (NR_027358, intron 3 of 4) intron (NR_027358, intron 3 of 4) 2742 NR_027358 283404 Hs.662443 NR_027358 ENSG00000258279 LINC00592 - long intergenic non-protein coding RNA 592 ncRNA 13-PTNLD9-TUMOR_peak_12176 chr12 12953465 12953570 + 8.78264 NA Intergenic L2a|LINE|L2 -12763 NM_016355 51202 Hs.719938 NM_016355 HPRD:10863 DDX47 E4-DBP|HQ0256|MSTP162|RRP3 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 protein-coding 13-PTNLD9-TUMOR_peak_12183 chr12 13025158 13025473 + 8.78264 NA Intergenic Intergenic -3096 NR_003932 387841 Hs.631728 NR_003932 ENSG00000234498 RPL13AP20 RPL13A_9_1211 ribosomal protein L13a pseudogene 20 pseudo 13-PTNLD9-TUMOR_peak_6593 chr10 17658761 17658884 + 8.78264 NA intron (NM_014241, intron 1 of 6) CpG 551 NM_014241 9200 Hs.114062 NM_014241 HPRD:10175 PTPLA CAP|HACD1 protein tyrosine phosphatase-like (proline instead of catalytic arginine), member A protein-coding 13-PTNLD9-TUMOR_peak_50445 chr8 27630101 27630284 + 8.78264 NA promoter-TSS (NM_018246) promoter-TSS (NM_018246) -22 NM_018246 55246 Hs.445512 NM_018246 HPRD:07705 CCDC25 - coiled-coil domain containing 25 protein-coding 13-PTNLD9-TUMOR_peak_46706 chr7 2155851 2155960 + 8.78027 NA intron (NM_001013836, intron 11 of 18) intron (NM_001013836, intron 11 of 18) 116678 NM_003550 8379 Hs.654838 NM_003550 HPRD:04065 MAD1L1 MAD1|PIG9|TP53I9|TXBP181 MAD1 mitotic arrest deficient-like 1 (yeast) protein-coding 13-PTNLD9-TUMOR_peak_43061 chr5 172629033 172629193 + 8.78027 NA Intergenic MER113B|DNA|hAT-Charlie 33202 NM_001166175 1482 Hs.54473 NM_004387 HPRD:02787 NKX2-5 CHNG5|CSX|CSX1|HLHS2|NKX2.5|NKX2E|NKX4-1|VSD3 NK2 homeobox 5 protein-coding 13-PTNLD9-TUMOR_peak_35622 chr3 124017998 124018111 + 8.78027 NA intron (NM_001024660, intron 6 of 59) intron (NM_001024660, intron 6 of 59) -75125 NR_106731 102464832 NR_106731 MIR6083 hsa-mir-6083 microRNA 6083 ncRNA 13-PTNLD9-TUMOR_peak_32865 chr22 22052296 22052405 + 8.78027 NA TTS (NM_014337) TTS (NM_014337) 32077 NM_148176 23759 Hs.438587 NM_014337 HPRD:08472 PPIL2 CYC4|CYP60|Cyp-60|UBOX7|hCyP-60 peptidylprolyl isomerase (cyclophilin)-like 2 protein-coding 13-PTNLD9-TUMOR_peak_420 chr1 11623941 11624124 + 8.78027 NA Intergenic L1ME4a|LINE|L1 -45556 NR_104624 101929181 Hs.568616 NR_104624 ENSG00000235643 LOC101929181 - uncharacterized LOC101929181 ncRNA 13-PTNLD9-TUMOR_peak_46209 chr6 145275167 145275460 + 8.78027 NA Intergenic Intergenic 662440 NM_007124 7402 Hs.133135 NM_007124 HPRD:00547 UTRN DMDL|DRP|DRP1 utrophin protein-coding 13-PTNLD9-TUMOR_peak_38794 chr4 86131713 86131842 + 8.78027 NA Intergenic LTR3B_|LTR|ERVK 243806 NR_015359 404201 Hs.720920 NM_205857 HPRD:13317 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_27781 chr2 98805170 98805476 + 8.78027 NA intron (NM_144992, intron 10 of 27) intron (NM_144992, intron 10 of 27) 101728 NM_144992 200403 Hs.269977 NM_144992 HPRD:14510 VWA3B - von Willebrand factor A domain containing 3B protein-coding 13-PTNLD9-TUMOR_peak_55024 chr9 138818841 138819032 + 8.78027 NA Intergenic MLT1G|LTR|ERVL-MaLR -19931 NM_015447 157922 Hs.522493 NM_015447 HPRD:13001 CAMSAP1 PRO2405|bA100C15.1 calmodulin regulated spectrin-associated protein 1 protein-coding 13-PTNLD9-TUMOR_peak_55206 chrUn_gl000213 9147 9300 + 8.78027 NA Intergenic Intergenic 16145 NR_107036 102466252 NR_107036 MIR8069-1 MIR8069|hsa-mir-8069 microRNA 8069-1 ncRNA 13-PTNLD9-TUMOR_peak_47075 chr7 23753625 23753756 + 8.78027 NA intron (NR_048542, intron 3 of 23) Tigger3b|DNA|TcMar-Tigger 3745 NM_001260504 56164 Hs.309767 NM_031414 HPRD:10427 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 13-PTNLD9-TUMOR_peak_26885 chr2 48475836 48475939 + 8.78027 NA Intergenic Intergenic -65908 NM_002158 3344 Hs.468478 NM_002158 HPRD:00882 FOXN2 HTLF forkhead box N2 protein-coding 13-PTNLD9-TUMOR_peak_19823 chr16 78776420 78776571 + 8.78027 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 643185 NR_120435 51741 Hs.461453 NM_016373 HPRD:05501 WWOX D16S432E|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 13-PTNLD9-TUMOR_peak_14327 chr12 131795841 131796010 + 8.78027 NA Intergenic Intergenic -36090 NR_103736 338797 Hs.592007 NM_001025466 LOC338797 - uncharacterized LOC338797 ncRNA 13-PTNLD9-TUMOR_peak_47040 chr7 22475482 22475607 + 8.78027 NA intron (NM_207342, intron 4 of 4) intron (NM_207342, intron 4 of 4) 64357 NM_001164460 256227 Hs.729825 NM_207342 ENSG00000105889 STEAP1B - STEAP family member 1B protein-coding 13-PTNLD9-TUMOR_peak_51467 chr8 103243439 103243639 + 8.78027 NA intron (NM_001172478, intron 1 of 7) intron (NM_001172478, intron 1 of 7) 7520 NM_001172477 50484 Hs.512592 NM_015713 HPRD:05276 RRM2B MTDPS8A|MTDPS8B|P53R2 ribonucleotide reductase M2 B (TP53 inducible) protein-coding 13-PTNLD9-TUMOR_peak_2327 chr1 85773957 85774060 + 8.77902 NA Intergenic Intergenic -31421 NM_003921 8915 Hs.193516 NM_003921 HPRD:04625 BCL10 CARMEN|CIPER|CLAP|c-E10|mE10 B-cell CLL/lymphoma 10 protein-coding 13-PTNLD9-TUMOR_peak_6354 chr10 5333844 5333992 + 8.77902 NA Intergenic MSTD|LTR|ERVL-MaLR -73058 NM_053049 114131 Hs.511775 NM_053049 HPRD:12066 UCN3 SCP|SPC|UCNIII urocortin 3 protein-coding 13-PTNLD9-TUMOR_peak_37312 chr3 194048800 194049043 + 8.77902 NA Intergenic Intergenic -18328 NR_024480 100131551 Hs.128066 NR_024480 ENSG00000214145 LINC00887 - long intergenic non-protein coding RNA 887 ncRNA 13-PTNLD9-TUMOR_peak_45045 chr6 42745247 42745453 + 8.77902 NA Intergenic Intergenic -31466 NM_003192 6903 Hs.75064 NM_003192 HPRD:04276 TBCC CFC tubulin folding cofactor C protein-coding 13-PTNLD9-TUMOR_peak_7520 chr10 64875644 64875851 + 8.77902 NA Intergenic Intergenic -17260 NM_001282405 29982 Hs.449628 NM_030759 HPRD:11401 NRBF2 COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 13-PTNLD9-TUMOR_peak_42359 chr5 140767168 140767280 + 8.77902 NA promoter-TSS (NM_032098) promoter-TSS (NM_032098) -228 NM_032098 8641 Hs.368160 NM_003736 HPRD:07215 PCDHGB4 CDH20|FIB2|PCDH-GAMMA-B4 protocadherin gamma subfamily B, 4 protein-coding 13-PTNLD9-TUMOR_peak_11813 chr12 2245193 2245451 + 8.77902 NA intron (NM_001129832, intron 3 of 47) L1PA2|LINE|L1 82871 NM_199460 775 Hs.118262 NM_000719 CACNA1C CACH2|CACN2|CACNL1A1|CCHL1A1|CaV1.2|LQT8|TS calcium channel, voltage-dependent, L type, alpha 1C subunit protein-coding 13-PTNLD9-TUMOR_peak_6128 chr1 244924756 244924895 + 8.77902 NA Intergenic Intergenic -73814 NM_198076 116228 Hs.411490 NM_198076 HPRD:13307 COX20 FAM36A COX20 cytochrome C oxidase assembly factor protein-coding 13-PTNLD9-TUMOR_peak_5645 chr1 226518020 226518230 + 8.77902 NA Intergenic AluSz|SINE|Alu -20676 NM_001270410 286826 Hs.120817 NM_173083 HPRD:13990 LIN9 BARA|BARPsv|Lin-9|TGS|TGS1|TGS2 lin-9 DREAM MuvB core complex component protein-coding 13-PTNLD9-TUMOR_peak_11274 chr11 114051336 114051433 + 8.77902 NA intron (NM_001018011, intron 3 of 6) intron (NM_001018011, intron 3 of 6) -115151 NM_006169 4837 Hs.503911 NM_006169 HPRD:02478 NNMT - nicotinamide N-methyltransferase protein-coding 13-PTNLD9-TUMOR_peak_37314 chr3 194090420 194090556 + 8.77902 NA promoter-TSS (NM_130830) promoter-TSS (NM_130830) -16 NM_001135057 131578 Hs.288467 NM_130830 HPRD:10058 LRRC15 LIB leucine rich repeat containing 15 protein-coding 13-PTNLD9-TUMOR_peak_36709 chr3 170873299 170873404 + 8.77902 NA intron (NM_001161565, intron 12 of 30) intron (NM_001161565, intron 12 of 30) -48803 NR_030295 693154 NR_030295 MIR569 MIRN569|hsa-mir-569 microRNA 569 ncRNA 13-PTNLD9-TUMOR_peak_15539 chr14 35169453 35169576 + 8.77902 NA Intergenic Intergenic 13509 NM_021914 1073 Hs.180141 NM_021914 HPRD:03262 CFL2 NEM7 cofilin 2 (muscle) protein-coding 13-PTNLD9-TUMOR_peak_33850 chr3 13579489 13579618 + 8.77902 NA Intergenic Intergenic -11072 NM_001998 2199 Hs.198862 NM_001998 HPRD:00630 FBLN2 - fibulin 2 protein-coding 13-PTNLD9-TUMOR_peak_47052 chr7 23060541 23060718 + 8.77902 NA Intergenic Intergenic -6859 NM_032581 84668 Hs.85603 NM_032581 HPRD:16837 FAM126A DRCTNNB1A|HCC|HLD5|HYCC1 family with sequence similarity 126, member A protein-coding 13-PTNLD9-TUMOR_peak_33931 chr3 15352155 15352518 + 8.77902 NA intron (NM_001018009, intron 2 of 8) intron (NM_001018009, intron 2 of 8) 21800 NM_004844 9467 Hs.257761 NM_004844 HPRD:12030 SH3BP5 SAB|SH3BP-5 SH3-domain binding protein 5 (BTK-associated) protein-coding 13-PTNLD9-TUMOR_peak_11690 chr11 130911269 130911515 + 8.77902 NA Intergenic MLT1L|LTR|ERVL-MaLR -125010 NM_001301089 399979 Hs.444024 NM_014758 HPRD:18621 SNX19 CHET8 sorting nexin 19 protein-coding 13-PTNLD9-TUMOR_peak_38544 chr4 69235232 69235510 + 8.77902 NA Intergenic AluJr|SINE|Alu -19547 NM_001031732 91746 Hs.175955 NM_133370 HPRD:11689 YTHDC1 YT521|YT521-B YTH domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_45391 chr6 57037029 57037396 + 8.77902 NA promoter-TSS (NR_110742) promoter-TSS (NR_110742) 108 NM_004282 9532 Hs.745046 NM_004282 BAG2 BAG-2|dJ417I1.2 BCL2-associated athanogene 2 protein-coding 13-PTNLD9-TUMOR_peak_36499 chr3 156530419 156530519 + 8.77518 NA promoter-TSS (NR_003284) promoter-TSS (NR_003284) -659 NR_003284 647033 Hs.745109 NR_003284 PA2G4P4 PA2G4L1 proliferation-associated 2G4 pseudogene 4 pseudo 13-PTNLD9-TUMOR_peak_30933 chr20 35455069 35455182 + 8.76952 NA intron (NM_080627, intron 3 of 14) L1MB2|LINE|L1 33151 NM_199181 140710 Hs.460807 NM_080627 HPRD:11116 SOGA1 C20orf117|KIAA0889|SOGA suppressor of glucose, autophagy associated 1 protein-coding 13-PTNLD9-TUMOR_peak_38752 chr4 84031698 84031798 + 8.76867 NA promoter-TSS (NM_001130716) promoter-TSS (NM_001130716) -736 NM_001130716 51316 Hs.546392 NM_016619 HPRD:06335 PLAC8 C15|DGIC|onzin placenta-specific 8 protein-coding 13-PTNLD9-TUMOR_peak_26561 chr2 36589510 36589756 + 8.76867 NA intron (NM_016441, intron 1 of 16) intron (NM_016441, intron 1 of 16) 6263 NM_016441 51232 Hs.699247 NM_016441 HPRD:08392 CRIM1 CRIM-1|S52 cysteine rich transmembrane BMP regulator 1 (chordin-like) protein-coding 13-PTNLD9-TUMOR_peak_34338 chr3 42159287 42159413 + 8.76867 NA intron (NM_001265608, intron 1 of 13) AluSc5|SINE|Alu 26604 NM_001265608 22906 Hs.535711 NM_014965 HPRD:09732 TRAK1 MILT1|OIP106 trafficking protein, kinesin binding 1 protein-coding 13-PTNLD9-TUMOR_peak_24952 chr19 39929312 39929504 + 8.76867 NA Intergenic AluSx|SINE|Alu -2790 NM_001020 6217 Hs.397609 NM_001020 HPRD:04724 RPS16 S16 ribosomal protein S16 protein-coding 13-PTNLD9-TUMOR_peak_21838 chr17 65362434 65362851 + 8.76867 NA promoter-TSS (NM_002816) promoter-TSS (NM_002816) 79 NM_174871 5718 Hs.592689 NM_002816 PSMD12 Rpn5|p55 proteasome (prosome, macropain) 26S subunit, non-ATPase, 12 protein-coding 13-PTNLD9-TUMOR_peak_38919 chr4 96653385 96653521 + 8.76867 NA Intergenic Intergenic -107786 NM_005390 5161 Hs.131361 NM_005390 HPRD:01531 PDHA2 PDHAL pyruvate dehydrogenase (lipoamide) alpha 2 protein-coding 13-PTNLD9-TUMOR_peak_53737 chr9 81804550 81804817 + 8.76867 NA Intergenic Intergenic -44102 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 13-PTNLD9-TUMOR_peak_29016 chr2 169557506 169557737 + 8.76867 NA intron (NM_203463, intron 6 of 9) MLT1I|LTR|ERVL-MaLR 85318 NR_045787 100861402 Hs.506829 NR_045786 ENSG00000227617 CERS6-AS1 - CERS6 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_43317 chr5 179517456 179517687 + 8.76867 NA Intergenic CpG -18453 NM_018434 55819 Hs.484363 NM_018434 HPRD:11504 RNF130 G1RZFP|GOLIATH|GP ring finger protein 130 protein-coding 13-PTNLD9-TUMOR_peak_4086 chr1 160162087 160162319 + 8.76867 NA intron (NM_001231, intron 1 of 10) intron (NM_001231, intron 1 of 10) 1918 NM_001231 844 Hs.632476 NM_001231 HPRD:15915 CASQ1 CASQ|PDIB1 calsequestrin 1 (fast-twitch, skeletal muscle) protein-coding 13-PTNLD9-TUMOR_peak_2460 chr1 92191578 92191754 + 8.76867 NA intron (NM_001195684, intron 8 of 17) intron (NM_001195684, intron 8 of 17) 160170 NM_003243 7049 Hs.482390 NM_003243 HPRD:02846 TGFBR3 BGCAN|betaglycan transforming growth factor, beta receptor III protein-coding 13-PTNLD9-TUMOR_peak_32531 chr21 45638420 45638595 + 8.76867 NA Intergenic Intergenic 22380 NM_001283050 23308 Hs.14155 NM_015259 HPRD:05757 ICOSLG B7-H2|B7H2|B7RP-1|B7RP1|CD275|GL50|ICOS-L|ICOSL|LICOS inducible T-cell co-stimulator ligand protein-coding 13-PTNLD9-TUMOR_peak_27480 chr2 86667834 86667976 + 8.76840 NA promoter-TSS (NM_018433) promoter-TSS (NM_018433) -366 NM_018433 55818 Hs.557425 NM_018433 HPRD:11054 KDM3A JHDM2A|JHMD2A|JMJD1|JMJD1A|TSGA lysine (K)-specific demethylase 3A protein-coding 13-PTNLD9-TUMOR_peak_39425 chr4 140476446 140476600 + 8.76739 NA intron (NM_030648, intron 1 of 7) CpG 1054 NM_030648 80854 Hs.480792 NM_030648 HPRD:16226 SETD7 KMT7|SET7|SET7/9|SET9 SET domain containing (lysine methyltransferase) 7 protein-coding 13-PTNLD9-TUMOR_peak_52965 chr9 27572727 27572929 + 8.76739 NA intron (NM_145005, intron 1 of 4) intron (NM_145005, intron 1 of 4) 663 NM_018325 203228 Hs.493639 NM_018325 HPRD:12975 C9orf72 ALSFTD|FTDALS chromosome 9 open reading frame 72 protein-coding 13-PTNLD9-TUMOR_peak_49730 chr7 152890232 152890381 + 8.76739 NA Intergenic Intergenic 219013 NR_125776 103724390 Hs.614280 NR_125776 LINC01287 TCONS_l2_00027522 long intergenic non-protein coding RNA 1287 ncRNA 13-PTNLD9-TUMOR_peak_25642 chr19 54713782 54714045 + 8.76739 NA Intergenic Intergenic 9187 NM_001013 6203 Hs.467284 NM_001013 HPRD:04696 RPS9 S9 ribosomal protein S9 protein-coding 13-PTNLD9-TUMOR_peak_19565 chr16 67208127 67208333 + 8.76739 NA exon (NM_001185057, exon 2 of 4) exon (NM_001185057, exon 2 of 4) 474 NM_003946 8996 Hs.513667 NM_003946 HPRD:05572 NOL3 ARC|FCM|MYP|NOP|NOP30 nucleolar protein 3 (apoptosis repressor with CARD domain) protein-coding 13-PTNLD9-TUMOR_peak_5735 chr1 228767183 228767316 + 8.76425 NA Intergenic CpG -13145 NR_037962 58480 Hs.647774 NM_021205 HPRD:06965 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 13-PTNLD9-TUMOR_peak_51867 chr8 125486426 125486606 + 8.76307 NA promoter-TSS (NM_007218) promoter-TSS (NM_007218) 79 NR_108048 101927612 Hs.633137 NR_108047 RNF139-AS1 - RNF139 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_10032 chr11 61739005 61739162 + 8.76307 NA Intergenic Intergenic -3951 NM_002032 2495 Hs.524910 NM_002032 HPRD:00615 FTH1 FHC|FTH|FTHL6|HFE5|PIG15|PLIF ferritin, heavy polypeptide 1 protein-coding 13-PTNLD9-TUMOR_peak_54558 chr9 117881305 117881445 + 8.75122 NA promoter-TSS (NM_002160) promoter-TSS (NM_002160) -839 NM_002160 3371 Hs.143250 NM_002160 HPRD:01756 TNC 150-225|DFNA56|GMEM|GP|HXB|JI|TN|TN-C tenascin C protein-coding 13-PTNLD9-TUMOR_peak_51666 chr8 117619070 117619584 + 8.75122 NA Intergenic Intergenic 148735 NM_003756 8667 Hs.492599 NM_003756 EIF3H EIF3S3|eIF3-gamma|eIF3-p40 eukaryotic translation initiation factor 3, subunit H protein-coding 13-PTNLD9-TUMOR_peak_38194 chr4 38668809 38669075 + 8.75122 NA intron (NM_016531, intron 1 of 5) intron (NM_016531, intron 1 of 5) -2693 NR_026804 79667 Hs.29725 NM_024614 HPRD:07818 KLF3-AS1 - KLF3 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_23387 chr18 61094843 61095038 + 8.75122 NA Intergenic Intergenic -5188 NM_004869 9525 Hs.126550 NM_004869 HPRD:15653 VPS4B SKD1|SKD1B|VPS4-2 vacuolar protein sorting 4 homolog B (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_37954 chr4 9606531 9606638 + 8.75122 NA Intergenic HERVS71-int|LTR|ERV1 -48647 NR_031688 100302277 NR_031688 miRBase:MI0006422 MIR548I2 MIR548I-2|MIRN548I2|hsa-mir-548i-2 microRNA 548i-2 ncRNA 13-PTNLD9-TUMOR_peak_14443 chr13 25086826 25086968 + 8.75122 NA promoter-TSS (NM_006437) promoter-TSS (NM_006437) 51 NM_006437 143 Hs.744855 NM_006437 HPRD:09598 PARP4 ADPRTL1|ARTD4|PARP-4|PARPL|PH5P|VAULT3|VPARP|VWA5C|p193 poly (ADP-ribose) polymerase family, member 4 protein-coding 13-PTNLD9-TUMOR_peak_12184 chr12 13025630 13025850 + 8.75122 NA Intergenic Intergenic -2671 NR_003932 387841 Hs.631728 NR_003932 ENSG00000234498 RPL13AP20 RPL13A_9_1211 ribosomal protein L13a pseudogene 20 pseudo 13-PTNLD9-TUMOR_peak_50032 chr8 8091416 8091545 + 8.75122 NA intron (NR_024363, intron 3 of 5) intron (NR_024363, intron 3 of 5) 5388 NR_024362 286042 Hs.656318 NR_024361 ENSG00000173295 FAM86B3P - family with sequence similarity 86, member A pseudogene pseudo 13-PTNLD9-TUMOR_peak_41028 chr5 61532529 61532699 + 8.75122 NA Intergenic Intergenic -69375 NM_001243953 3796 Hs.558351 NM_004520 KIF2A CDCBM3|HK2|KIF2 kinesin heavy chain member 2A protein-coding 13-PTNLD9-TUMOR_peak_17813 chr15 83011800 83011937 + 8.74994 NA intron (NM_001164465, intron 6 of 9) intron (NM_001164465, intron 6 of 9) 6330 NM_001164465 647042 Hs.454625 NM_001164465 ENSG00000205281 GOLGA6L10 GOLGA6L18 golgin A6 family-like 10 protein-coding 13-PTNLD9-TUMOR_peak_33520 chr22 50963929 50964252 + 8.74994 NA promoter-TSS (NM_005138) promoter-TSS (NM_005138) -56 NM_005138 9997 Hs.180903 NM_005138 HPRD:05042 SCO2 CEMCOX1|MYP6|SCO1L SCO2 cytochrome c oxidase assembly protein protein-coding 13-PTNLD9-TUMOR_peak_11415 chr11 119992240 119992410 + 8.74911 NA intron (NM_012101, intron 5 of 8) intron (NM_012101, intron 5 of 8) 16538 NM_012101 23650 Hs.504115 NM_012101 HPRD:10280 TRIM29 ATDC tripartite motif containing 29 protein-coding 13-PTNLD9-TUMOR_peak_8289 chr10 106207169 106207379 + 8.74911 NA intron (NM_001008723, intron 15 of 17) intron (NM_001008723, intron 15 of 17) 32759 NR_120624 101927523 Hs.407539 NR_120624 ENSG00000225768 LOC101927523 - uncharacterized LOC101927523 ncRNA 13-PTNLD9-TUMOR_peak_47917 chr7 73493749 73493882 + 8.74911 NA Intergenic Intergenic -4292 NM_002314 3984 Hs.647035 NM_002314 HPRD:03210 LIMK1 LIMK|LIMK-1 LIM domain kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_3802 chr1 154703637 154703946 + 8.74911 NA intron (NM_002249, intron 4 of 7) intron (NM_002249, intron 4 of 7) -103335 NM_001025107 103 Hs.12341 NM_001111 HPRD:07528 ADAR ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136 adenosine deaminase, RNA-specific protein-coding 13-PTNLD9-TUMOR_peak_28223 chr2 119745510 119745839 + 8.74911 NA intron (NM_006770, intron 12 of 16) MIRb|SINE|MIR 45929 NM_006770 8685 Hs.67726 NM_006770 HPRD:05337 MARCO SCARA2 macrophage receptor with collagenous structure protein-coding 13-PTNLD9-TUMOR_peak_18876 chr16 28386491 28386655 + 8.74911 NA Intergenic Intergenic -12392 NM_001282524 728741 Hs.726467 NM_001282524 ENSG00000198156 NPIPB6 NPIPB nuclear pore complex interacting protein family, member B6 protein-coding 13-PTNLD9-TUMOR_peak_36064 chr3 136651492 136651681 + 8.74911 NA intron (NM_001190796, intron 1 of 2) intron (NM_001190796, intron 1 of 2) 2269 NM_001190796 4690 Hs.126889 NM_006153 HPRD:02740 NCK1 NCK|NCKalpha|nck-1 NCK adaptor protein 1 protein-coding 13-PTNLD9-TUMOR_peak_39418 chr4 140097517 140097798 + 8.74004 NA Intergenic CpG -37027 NM_201999 1998 Hs.634040 NM_006874 HPRD:16856 ELF2 EU32|NERF|NERF-1A|NERF-1B|NERF-1a,b|NERF-2 E74-like factor 2 (ets domain transcription factor) protein-coding 13-PTNLD9-TUMOR_peak_44045 chr6 19835945 19836136 + 8.74004 NA Intergenic Intergenic -1561 NM_001546 3400 Hs.519601 NM_001546 ID4 IDB4|bHLHb27 inhibitor of DNA binding 4, dominant negative helix-loop-helix protein protein-coding 13-PTNLD9-TUMOR_peak_48501 chr7 99863610 99863765 + 8.74004 NA intron (NR_028038, intron 1 of 6) intron (NR_028038, intron 1 of 6) 6168 NR_028040 352954 Hs.556063 NM_178831 HPRD:17030 GATS STAG3OS GATS, stromal antigen 3 opposite strand protein-coding 13-PTNLD9-TUMOR_peak_2334 chr1 85987292 85987414 + 8.74004 NA intron (NM_001134445, intron 1 of 6) L2c|LINE|L2 -56464 NM_012137 23576 Hs.713411 NM_012137 HPRD:09203 DDAH1 DDAH|HEL-S-16 dimethylarginine dimethylaminohydrolase 1 protein-coding 13-PTNLD9-TUMOR_peak_40170 chr5 1113080 1113320 + 8.74004 NA Intergenic Intergenic -1028 NM_006598 10723 Hs.172613 NM_006598 HPRD:09221 SLC12A7 KCC4 solute carrier family 12 (potassium/chloride transporter), member 7 protein-coding 13-PTNLD9-TUMOR_peak_48997 chr7 128509276 128509554 + 8.74004 NA 3' UTR (NM_001195150, exon 2 of 2) 3' UTR (NM_001195150, exon 2 of 2) 2951 NM_001195150 100130705 Hs.641532 NM_001195150 LOC100130705 - uncharacterized LOC100130705 protein-coding 13-PTNLD9-TUMOR_peak_4820 chr1 192454979 192455151 + 8.74004 NA Intergenic MamSINE1|SINE|tRNA -89792 NM_002922 5996 Hs.75256 NM_002922 HPRD:15968 RGS1 1R20|BL34|HEL-S-87|IER1|IR20 regulator of G-protein signaling 1 protein-coding 13-PTNLD9-TUMOR_peak_9645 chr11 44972364 44972510 + 8.74004 NA promoter-TSS (NM_001258320) promoter-TSS (NM_001258320) 171 NM_006034 9537 Hs.554791 NM_006034 HPRD:15545 TP53I11 PIG11 tumor protein p53 inducible protein 11 protein-coding 13-PTNLD9-TUMOR_peak_41148 chr5 68797825 68798018 + 8.73917 NA intron (NM_001205254, intron 1 of 8) AluSx|SINE|Alu -2083 NM_001205255 100506658 Hs.592605 NM_002538 ENSG00000197822 OCLN BLCPMG|PPP1R115 occludin protein-coding 13-PTNLD9-TUMOR_peak_23704 chr19 3968770 3968891 + 8.73917 NA intron (NM_001348, intron 2 of 8) intron (NM_001348, intron 2 of 8) 2291 NM_001348 1613 Hs.631844 NM_001348 HPRD:04478 DAPK3 DLK|ZIP|ZIPK death-associated protein kinase 3 protein-coding 13-PTNLD9-TUMOR_peak_13155 chr12 64846705 64846871 + 8.73917 NA intron (NM_013254, intron 1 of 20) intron (NM_013254, intron 1 of 20) 948 NM_013254 29110 Hs.505874 NM_013254 HPRD:05322 TBK1 NAK|T2K TANK-binding kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_5712 chr1 228566965 228567067 + 8.73917 NA TTS (NM_001098623) TTS (NM_001098623) 17794 NR_106800 102465444 NR_106800 MIR6742 hsa-mir-6742 microRNA 6742 ncRNA 13-PTNLD9-TUMOR_peak_408 chr1 11218796 11219079 + 8.73631 NA intron (NM_004958, intron 29 of 57) intron (NM_004958, intron 29 of 57) 14982 NR_046600 100873935 Hs.679133 NR_046600 ENSG00000225602 MTOR-AS1 - MTOR antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_54984 chr9 136344231 136344395 + 8.73631 NA promoter-TSS (NM_017585) promoter-TSS (NM_017585) -37 NM_017585 11182 Hs.244378 NM_017585 HPRD:06010 SLC2A6 GLUT6|GLUT9|HSA011372 solute carrier family 2 (facilitated glucose transporter), member 6 protein-coding 13-PTNLD9-TUMOR_peak_10905 chr11 92586162 92586437 + 8.73631 NA intron (NM_001008781, intron 18 of 24) MER52A|LTR|ERV1 -116490 NM_005959 4544 Hs.569039 NM_005959 HPRD:02882 MTNR1B FGQTL2|MEL-1B-R|MT2 melatonin receptor 1B protein-coding 13-PTNLD9-TUMOR_peak_27531 chr2 88152516 88152770 + 8.73631 NA intron (NM_001024457, intron 1 of 22).2 intron (NM_001024457, intron 1 of 22).2 -27357 NM_001078170 729857 Hs.652430 NM_001078170 RGPD2 NUP358|RANBP2L2|RGP2 RANBP2-like and GRIP domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_4929 chr1 201195251 201195359 + 8.73631 NA intron (NM_001164586, intron 22 of 23) intron (NM_001164586, intron 22 of 23) 35352 NM_001164586 91156 Hs.519024 NM_178275 HPRD:16812 IGFN1 EEF1A2BP1 immunoglobulin-like and fibronectin type III domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_44645 chr6 32952429 32952790 + 8.73631 NA Intergenic Intergenic 11748 NM_001199456 6046 Hs.75243 NM_005104 HPRD:03326 BRD2 D6S113E|FSH|FSRG1|NAT|RING3|RNF3 bromodomain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_36034 chr3 135085866 135085967 + 8.73631 NA Intergenic Intergenic 571817 NM_004441 2047 Hs.116092 NM_004441 HPRD:02790 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 13-PTNLD9-TUMOR_peak_53386 chr9 65576879 65577053 + 8.73631 NA Intergenic CpG -67356 NM_001113541 727905 Hs.645497 NM_001113541 ENSG00000233788 SPATA31A5 FAM75A5 SPATA31 subfamily A, member 5 protein-coding 13-PTNLD9-TUMOR_peak_53272 chr9 41433310 41433446 + 8.73631 NA Intergenic CpG -67301 NM_015667 26165 Hs.123004 NM_015667 HPRD:12954 SPATA31A7 C9orf36A|FAM75A4|FAM75A7|SPATA31A4 SPATA31 subfamily A, member 7 protein-coding 13-PTNLD9-TUMOR_peak_40733 chr5 42995138 42995248 + 8.73631 NA Intergenic CpG -1758 NR_104643 643977 Hs.535791 NR_104643 FLJ32255 - uncharacterized LOC643977 ncRNA 13-PTNLD9-TUMOR_peak_30996 chr20 37233675 37233777 + 8.73631 NA intron (NM_001164431, intron 1 of 14) intron (NM_001164431, intron 1 of 14) 3149 NM_001164431 343578 Hs.451997 NM_001164431 ENSG00000124143 ARHGAP40 C20orf95|dJ1100H13.4 Rho GTPase activating protein 40 protein-coding 13-PTNLD9-TUMOR_peak_29045 chr2 171441749 171441866 + 8.73631 NA intron (NM_138995, intron 32 of 34) intron (NM_138995, intron 32 of 34) 129270 NR_027433 440925 Hs.668461 NM_001013712 HPRD:18455 LINC01124 - long intergenic non-protein coding RNA 1124 ncRNA 13-PTNLD9-TUMOR_peak_43836 chr6 13269507 13269652 + 8.73631 NA intron (NM_030948, intron 10 of 14) intron (NM_030948, intron 10 of 14) 26239 NM_001242698 100130357 Hs.657498 NM_001242698 LOC100130357 - uncharacterized LOC100130357 protein-coding 13-PTNLD9-TUMOR_peak_45060 chr6 42989115 42989373 + 8.73631 NA promoter-TSS (NM_033112) promoter-TSS (NM_033112) -141 NM_033112 88745 Hs.309231 NM_033112 HPRD:12859 RRP36 C6orf153|dJ20C7.4 ribosomal RNA processing 36 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_19884 chr16 81491498 81491644 + 8.73631 NA intron (NM_198390, intron 1 of 20) intron (NM_198390, intron 1 of 20) 12796 NM_198390 80790 Hs.594095 NM_030629 HPRD:10839 CMIP TCMIP c-Maf inducing protein protein-coding 13-PTNLD9-TUMOR_peak_37365 chr3 195073927 195074048 + 8.73631 NA intron (NM_012287, intron 4 of 22) MLT1F1|LTR|ERVL-MaLR -82092 NM_152531 152002 Hs.478741 NM_152531 HPRD:08757 XXYLT1 C3orf21 xyloside xylosyltransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_32813 chr22 21161812 21161937 + 8.73631 NA intron (NM_058004, intron 9 of 54) intron (NM_058004, intron 9 of 54) 33491 NM_000185 3053 Hs.474270 NM_000185 HPRD:00795 SERPIND1 D22S673|HC2|HCF2|HCII|HLS2|LS2|THPH10 serpin peptidase inhibitor, clade D (heparin cofactor), member 1 protein-coding 13-PTNLD9-TUMOR_peak_34956 chr3 72338392 72338793 + 8.73631 NA Intergenic Intergenic 138184 NR_038221 201617 Hs.382623 NR_038221 ENSG00000243083 LINC00870 - long intergenic non-protein coding RNA 870 ncRNA 13-PTNLD9-TUMOR_peak_9935 chr11 59060244 59060398 + 8.73631 NA Intergenic MER41B|LTR|ERV1 -71611 NM_001004729 390195 Hs.553755 NM_001004729 HPRD:15032 OR5AN1 OR11-244 olfactory receptor, family 5, subfamily AN, member 1 protein-coding 13-PTNLD9-TUMOR_peak_13175 chr12 65545891 65545991 + 8.73238 NA Intergenic L1MA9|LINE|L1 -17410 NM_014319 23592 Hs.744150 NM_014319 HPRD:09704 LEMD3 MAN1 LEM domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_7447 chr10 60573400 60573631 + 8.73238 NA intron (NM_001080512, intron 17 of 20) intron (NM_001080512, intron 17 of 20) 98740 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 13-PTNLD9-TUMOR_peak_52907 chr9 21965623 21965768 + 8.73238 NA Intergenic CpG -1443 NR_024274 51198 Hs.721053 NM_016349 ENSG00000224854 C9orf53 bA149I2.3 chromosome 9 open reading frame 53 ncRNA 13-PTNLD9-TUMOR_peak_11005 chr11 96457389 96457580 + 8.73238 NA Intergenic LTR5_Hs|LTR|ERVK -217443 NR_047481 100874053 Hs.742044 NR_047481 JRKL-AS1 - JRKL antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_20923 chr17 35836672 35836852 + 8.73238 NA intron (NM_001488, intron 15 of 15) intron (NM_001488, intron 15 of 15) -13189 NM_007026 11072 Hs.91448 NM_007026 HPRD:09427 DUSP14 MKP-L|MKP6 dual specificity phosphatase 14 protein-coding 13-PTNLD9-TUMOR_peak_22464 chr18 3368267 3368487 + 8.73238 NA Intergenic Intergenic -43548 NM_174886 7050 Hs.373550 NM_003244 HPRD:04023 TGIF1 HPE4|TGIF TGFB-induced factor homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_28755 chr2 153288784 153289083 + 8.73238 NA intron (NM_052905, intron 1 of 25) intron (NM_052905, intron 1 of 25) 97182 NM_052905 114793 Hs.654630 NM_052905 HPRD:13545 FMNL2 FHOD2 formin-like 2 protein-coding 13-PTNLD9-TUMOR_peak_29357 chr2 191427867 191428010 + 8.73238 NA Intergenic (CCCA)n|Simple_repeat|Simple_repeat -28470 NM_001142645 100131211 Hs.659824 NM_001142645 TMEM194B - transmembrane protein 194B protein-coding 13-PTNLD9-TUMOR_peak_20884 chr17 33915665 33915795 + 8.73238 NA intron (NM_001030006, intron 1 of 21) intron (NM_001030006, intron 1 of 21) 1448 NM_001030006 163 Hs.514819 NM_001282 HPRD:03015 AP2B1 ADTB2|AP105B|AP2-BETA|CLAPB1 adaptor-related protein complex 2, beta 1 subunit protein-coding 13-PTNLD9-TUMOR_peak_22902 chr18 32073632 32073987 + 8.73238 NA intron (NM_032979, intron 1 of 16) CpG 555 NM_032975 1837 Hs.643454 NM_001390 HPRD:03141 DTNA D18S892E|DRP3|DTN|DTN-A|LVNC1 dystrobrevin, alpha protein-coding 13-PTNLD9-TUMOR_peak_6591 chr10 17554521 17554713 + 8.73238 NA Intergenic Intergenic -58363 NM_001004470 338596 Hs.677766 NM_001004470 ST8SIA6 SIA8F|SIAT8F|ST8SIA-VI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 protein-coding 13-PTNLD9-TUMOR_peak_12938 chr12 54817097 54817209 + 8.73238 NA intron (NR_120488, intron 1 of 2) intron (NR_120488, intron 1 of 2) 3584 NR_120488 102724050 Hs.670941 NR_120486 LOC102724050 - uncharacterized LOC102724050 ncRNA 13-PTNLD9-TUMOR_peak_6240 chr10 639868 640079 + 8.73238 NA intron (NM_014974, intron 1 of 36) intron (NM_014974, intron 1 of 36) 47745 NR_049884 100847086 NR_049884 MIR5699 - microRNA 5699 ncRNA 13-PTNLD9-TUMOR_peak_14674 chr13 43619663 43619798 + 8.73238 NA intron (NM_013238, intron 1 of 5) LTR2B|LTR|ERV1 22368 NM_013238 29103 Hs.438830 NM_013238 HPRD:13238 DNAJC15 DNAJD1|HSD18|MCJ DnaJ (Hsp40) homolog, subfamily C, member 15 protein-coding 13-PTNLD9-TUMOR_peak_34442 chr3 46746631 46746782 + 8.73238 NA intron (NM_147196, intron 1 of 3) intron (NM_147196, intron 1 of 3) 3883 NM_147196 259236 Hs.185777 NM_147196 HPRD:06252 TMIE DFNB6 transmembrane inner ear protein-coding 13-PTNLD9-TUMOR_peak_32445 chr21 44219789 44219951 + 8.73238 NA Intergenic LTR10F|LTR|ERV1 79515 NM_001260477 10785 Hs.248815 NM_018669 HPRD:09330 WDR4 TRM82|TRMT82 WD repeat domain 4 protein-coding 13-PTNLD9-TUMOR_peak_12396 chr12 27793660 27793782 + 8.73238 NA intron (NM_177444, intron 4 of 28) intron (NM_177444, intron 4 of 28) -55707 NM_001029874 387849 Hs.269836 NM_001029874 ENSG00000174236 REP15 RAB15EP RAB15 effector protein protein-coding 13-PTNLD9-TUMOR_peak_4970 chr1 201528891 201529014 + 8.73238 NA Intergenic Intergenic 39920 NR_026667 376693 Hs.605989 NR_026667 RPS10P7 RPS10_2_147 ribosomal protein S10 pseudogene 7 pseudo 13-PTNLD9-TUMOR_peak_5064 chr1 203135725 203135854 + 8.73238 NA 3' UTR (NM_000674, exon 4 of 4) 3' UTR (NM_000674, exon 4 of 4) 9153 NM_004997 4608 Hs.927 NM_004997 HPRD:01186 MYBPH - myosin binding protein H protein-coding 13-PTNLD9-TUMOR_peak_56103 chrX 70473989 70474169 + 8.73238 NA promoter-TSS (NM_201599) promoter-TSS (NM_201599) -41 NM_201599 9203 Hs.522684 NM_005096 HPRD:02088 ZMYM3 DXS6673E|MYM|XFIM|ZNF198L2|ZNF261 zinc finger, MYM-type 3 protein-coding 13-PTNLD9-TUMOR_peak_5584 chr1 224635090 224635259 + 8.73238 NA Intergenic MLT2B3|LTR|ERVL -13173 NM_001115113 80232 Hs.497873 NM_025160 HPRD:18298 WDR26 CDW2|GID7|MIP2 WD repeat domain 26 protein-coding 13-PTNLD9-TUMOR_peak_27923 chr2 106385556 106385870 + 8.73238 NA intron (NM_001004722, intron 1 of 3) intron (NM_001004722, intron 1 of 3) 24193 NM_001004722 8440 Hs.529244 NM_003581 HPRD:05378 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 13-PTNLD9-TUMOR_peak_17234 chr15 46148540 46148676 + 8.73238 NA Intergenic LTR16B2|LTR|ERVL 221670 NM_021199 58472 Hs.511251 NM_021199 HPRD:18102 SQRDL PRO1975 sulfide quinone reductase-like (yeast) protein-coding 13-PTNLD9-TUMOR_peak_10548 chr11 72065518 72065648 + 8.73238 NA intron (NM_030813, intron 6 of 16) intron (NM_030813, intron 6 of 16) 80141 NM_001258393 81570 Hs.523877 NM_030813 HPRD:11560 CLPB HSP78|SKD3 ClpB caseinolytic peptidase B homolog (E. coli) protein-coding 13-PTNLD9-TUMOR_peak_39113 chr4 114316002 114316099 + 8.73238 NA Intergenic Intergenic 242612 NR_107049 102465878 NR_107049 MIR8082 hsa-mir-8082 microRNA 8082 ncRNA 13-PTNLD9-TUMOR_peak_49724 chr7 152503664 152503976 + 8.73102 NA intron (NR_073000, intron 3 of 10) MLT1J|LTR|ERVL-MaLR 46986 NR_073000 57180 Hs.647117 NM_020445 HPRD:12489 ACTR3B ARP11|ARP3BETA ARP3 actin-related protein 3 homolog B (yeast) protein-coding 13-PTNLD9-TUMOR_peak_4654 chr1 182054172 182054343 + 8.73102 NA Intergenic Intergenic -23410 NM_001009992 127665 Hs.684328 NM_001009992 HPRD:18361 ZNF648 - zinc finger protein 648 protein-coding 13-PTNLD9-TUMOR_peak_28167 chr2 114606737 114606911 + 8.73102 NA intron (NR_110174, intron 2 of 4) intron (NR_110174, intron 2 of 4) -40687 NR_102318 10096 Hs.433512 NM_005721 HPRD:05024 ACTR3 ARP3 ARP3 actin-related protein 3 homolog (yeast) protein-coding 13-PTNLD9-TUMOR_peak_32588 chr21 46976003 46976194 + 8.73102 NA Intergenic CpG -13713 NM_194255 6573 Hs.84190 NM_003056 HPRD:02691 SLC19A1 CHMD|FOLT|IFC1|REFC|RFC1 solute carrier family 19 (folate transporter), member 1 protein-coding 13-PTNLD9-TUMOR_peak_9170 chr11 14737404 14737742 + 8.73102 NA intron (NM_000922, intron 1 of 15) L1PA2|LINE|L1 72304 NM_000922 5140 Hs.445711 NM_000922 HPRD:03626 PDE3B HcGIP1|cGIPDE1 phosphodiesterase 3B, cGMP-inhibited protein-coding 13-PTNLD9-TUMOR_peak_11333 chr11 117014852 117015006 + 8.73102 NA promoter-TSS (NM_001184747) promoter-TSS (NM_001184747) -71 NR_110268 5049 Hs.728488 NM_002572 HPRD:03940 PAFAH1B2 HEL-S-303 platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa) protein-coding 13-PTNLD9-TUMOR_peak_40189 chr5 1380299 1380714 + 8.73102 NA Intergenic LTR12D|LTR|ERV1 -35504 NM_030782 81037 Hs.444673 NM_030782 HPRD:07480 CLPTM1L CRR9 CLPTM1-like protein-coding 13-PTNLD9-TUMOR_peak_22969 chr18 37035360 37035558 + 8.73102 NA intron (NR_024391, intron 3 of 3) MLT1H|LTR|ERVL-MaLR -221226 NR_049847 100847025 NR_049847 miRBase:MI0019139 MIR5583-1 - microRNA 5583-1 ncRNA 13-PTNLD9-TUMOR_peak_27772 chr2 98485797 98486094 + 8.73102 NA intron (NM_015348, intron 4 of 40) intron (NM_015348, intron 4 of 40) 126409 NM_015348 23505 Hs.469376 NM_015348 ENSG00000075568 TMEM131 CC28|PRO1048|RW1|YR-23 transmembrane protein 131 protein-coding 13-PTNLD9-TUMOR_peak_5716 chr1 228605570 228605667 + 8.72042 NA Intergenic MER41B|LTR|ERV1 -1035 NM_001134855 51127 Hs.121748 NM_016102 HPRD:05839 TRIM17 RBCC|RNF16|terf tripartite motif containing 17 protein-coding 13-PTNLD9-TUMOR_peak_2360 chr1 87258573 87259063 + 8.72042 NA Intergenic Intergenic 88565 NM_001206653 51100 Hs.136309 NM_016009 HPRD:15333 SH3GLB1 Bif-1|PPP1R70|dJ612B15.2 SH3-domain GRB2-like endophilin B1 protein-coding 13-PTNLD9-TUMOR_peak_22281 chr17 79652279 79652401 + 8.72042 NA intron (NM_004712, intron 1 of 21) MIR|SINE|MIR 1378 NM_004712 9146 Hs.661056 NM_004712 HPRD:05085 HGS HRS hepatocyte growth factor-regulated tyrosine kinase substrate protein-coding 13-PTNLD9-TUMOR_peak_51917 chr8 126569553 126569659 + 8.72042 NA Intergenic MER5B|DNA|hAT-Charlie 125155 NM_001282985 10221 Hs.444947 NM_025195 HPRD:09863 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 13-PTNLD9-TUMOR_peak_39995 chr4 185455666 185455816 + 8.72042 NA Intergenic Intergenic -60015 NM_002199 3660 Hs.654566 NM_002199 HPRD:00962 IRF2 IRF-2 interferon regulatory factor 2 protein-coding 13-PTNLD9-TUMOR_peak_23599 chr19 1095372 1095545 + 8.72042 NA promoter-TSS (NM_002695) promoter-TSS (NM_002695) -67 NM_002695 5434 Hs.24301 NM_002695 POLR2E RPABC1|RPB5|XAP4|hRPB25|hsRPB5 polymerase (RNA) II (DNA directed) polypeptide E, 25kDa protein-coding 13-PTNLD9-TUMOR_peak_205 chr1 6551708 6551877 + 8.72042 NA promoter-TSS (NM_020631) promoter-TSS (NM_020631) -31 NM_020631 57449 Hs.284232 NM_020631 HPRD:11104 PLEKHG5 CMTRIC|DSMA4|GEF720|Syx|Tech pleckstrin homology domain containing, family G (with RhoGef domain) member 5 protein-coding 13-PTNLD9-TUMOR_peak_3889 chr1 155830208 155830491 + 8.71937 NA intron (NM_152280, intron 1 of 3) CpG 1089 NM_152280 23208 Hs.32984 NM_152280 HPRD:12289 SYT11 SYT12|sytXI synaptotagmin XI protein-coding 13-PTNLD9-TUMOR_peak_50611 chr8 37552685 37552849 + 8.71937 NA promoter-TSS (NM_025069) promoter-TSS (NM_025069) -534 NM_025069 80139 Hs.744591 NM_025069 ZNF703 ZEPPO1|ZNF503L|ZPO1 zinc finger protein 703 protein-coding 13-PTNLD9-TUMOR_peak_49349 chr7 139430900 139431052 + 8.71890 NA intron (NM_022740, intron 1 of 14) intron (NM_022740, intron 1 of 14) 46717 NM_022740 28996 Hs.731417 NM_022740 HPRD:06039 HIPK2 PRO0593 homeodomain interacting protein kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_39689 chr4 154385316 154385424 + 8.71511 NA Intergenic Intergenic -2128 NM_001131007 23240 Hs.732450 NM_015196 HPRD:13823 KIAA0922 TMEM131L KIAA0922 protein-coding 13-PTNLD9-TUMOR_peak_4314 chr1 167765434 167765572 + 8.71420 NA Intergenic Intergenic 74316 NM_001146191 9019 Hs.493919 NM_003953 HPRD:05086 MPZL1 MPZL1b|PZR|PZR1b|PZRa|PZRb myelin protein zero-like 1 protein-coding 13-PTNLD9-TUMOR_peak_8815 chr11 2412072 2412338 + 8.71420 NA intron (NM_001297649, intron 2 of 7) intron (NM_001297649, intron 2 of 7) -9513 NM_001297661 10078 Hs.523424 NM_005706 HPRD:10357 TSSC4 - tumor suppressing subtransferable candidate 4 protein-coding 13-PTNLD9-TUMOR_peak_49996 chr8 7079354 7079659 + 8.71099 NA Intergenic CpG 41508 NR_027000 349196 Hs.559040 NM_001025473 LINC00965 - long intergenic non-protein coding RNA 965 ncRNA 13-PTNLD9-TUMOR_peak_32039 chr21 27761049 27761426 + 8.71099 NA Intergenic Intergenic 184344 NM_052954 116159 Hs.37445 NM_052954 ENSG00000166265 CYYR1 C21orf95 cysteine/tyrosine-rich 1 protein-coding 13-PTNLD9-TUMOR_peak_19138 chr16 33416213 33416338 + 8.71099 NA Intergenic L2a|LINE|L2 -117573 NR_033866 390705 Hs.278513 NR_033866 LOC390705 - protein phosphatase 2, regulatory subunit B'', beta pseudogene pseudo 13-PTNLD9-TUMOR_peak_33387 chr22 43374488 43375031 + 8.71099 NA intron (NM_001184970, intron 1 of 10) intron (NM_001184970, intron 1 of 10) -18872 NM_001184971 11252 Hs.162877 NM_007229 HPRD:05390 PACSIN2 SDPII protein kinase C and casein kinase substrate in neurons 2 protein-coding 13-PTNLD9-TUMOR_peak_37403 chr3 195681229 195681380 + 8.70121 NA Intergenic CpG 35846 NR_003264 255812 Hs.566872 NR_003264 ENSG00000185485 SDHAP1 SDHAL1|SDHALP1 succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_2483 chr1 93426029 93426159 + 8.70064 NA intron (NM_001252273, intron 1 of 4) MamSINE1|SINE|tRNA 985 NM_001252269 388650 Hs.180946 NM_001006605 HPRD:14204 FAM69A - family with sequence similarity 69, member A protein-coding 13-PTNLD9-TUMOR_peak_4343 chr1 168552303 168552491 + 8.70064 NA Intergenic L2c|LINE|L2 6686 NM_002995 6375 Hs.546295 NM_002995 HPRD:02595 XCL1 ATAC|LPTN|LTN|SCM-1|SCM-1a|SCM1|SCM1A|SCYC1 chemokine (C motif) ligand 1 protein-coding 13-PTNLD9-TUMOR_peak_42030 chr5 131750909 131751022 + 8.70064 NA intron (NR_045116, intron 1 of 3) MER113|DNA|hAT-Charlie 4500 NR_045116 441108 Hs.658288 NM_001013717 HPRD:18460 C5orf56 - chromosome 5 open reading frame 56 ncRNA 13-PTNLD9-TUMOR_peak_50022 chr8 7922862 7922975 + 8.69673 NA Intergenic CpG 23693 NR_031689 100302186 NR_031689 miRBase:MI0006423 MIR548I3 MIR548I-3|MIRN548I3|hsa-mir-548i-3 microRNA 548i-3 ncRNA 13-PTNLD9-TUMOR_peak_18626 chr16 16090487 16090820 + 8.69398 NA intron (NM_004996, intron 1 of 30) intron (NM_004996, intron 1 of 30) 47219 NM_004996 4363 Hs.391464 NM_004996 HPRD:01153 ABCC1 ABC29|ABCC|GS-X|MRP|MRP1 ATP-binding cassette, sub-family C (CFTR/MRP), member 1 protein-coding 13-PTNLD9-TUMOR_peak_20994 chr17 38170035 38170207 + 8.69398 NA Intergenic Intergenic -1493 NR_033662 1440 Hs.2233 NM_000759 HPRD:00736 CSF3 C17orf33|CSF3OS|GCSF colony stimulating factor 3 (granulocyte) protein-coding 13-PTNLD9-TUMOR_peak_31403 chr20 48687924 48688046 + 8.69398 NA Intergenic Intergenic -29819 NR_051976 100887755 Hs.195705 NR_051976 TRERNA1 LINC00651|treRNA translation regulatory long non-coding RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_7443 chr10 60094596 60094927 + 8.69398 NA promoter-TSS (NM_003338) promoter-TSS (NM_003338) 22 NM_001204880 7321 Hs.129683 NM_003338 HPRD:04267 UBE2D1 E2(17)KB1|SFT|UBC4/5|UBCH5|UBCH5A ubiquitin-conjugating enzyme E2D 1 protein-coding 13-PTNLD9-TUMOR_peak_24235 chr19 15590473 15590752 + 8.69398 NA promoter-TSS (NM_052890) promoter-TSS (NM_052890) -297 NM_052890 114770 Hs.282244 NM_052890 HPRD:10495 PGLYRP2 HMFT0141|PGLYRPL|PGRP-L|PGRPL|TAGL-like|tagL|tagL-alpha|tagl-beta peptidoglycan recognition protein 2 protein-coding 13-PTNLD9-TUMOR_peak_9544 chr11 35661494 35661642 + 8.69398 NA Intergenic Intergenic 21833 NM_014344 24147 Hs.39384 NM_014344 HPRD:16897 FJX1 - four jointed box 1 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_50214 chr8 19919632 19919754 + 8.69398 NA Intergenic Intergenic 121024 NM_001142325 6570 Hs.158322 NM_003053 HPRD:01897 SLC18A1 CGAT|VAT1|VMAT1 solute carrier family 18 (vesicular monoamine transporter), member 1 protein-coding 13-PTNLD9-TUMOR_peak_23118 chr18 46015005 46015194 + 8.69398 NA Intergenic Intergenic -50328 NM_014772 9811 Hs.145230 NM_014772 HPRD:11083 CTIF Gm672|KIAA0427 CBP80/20-dependent translation initiation factor protein-coding 13-PTNLD9-TUMOR_peak_44128 chr6 24522405 24522604 + 8.69398 NA intron (NM_170740, intron 7 of 10) AluJb|SINE|Alu 27307 NM_170740 7915 Hs.371723 NM_001080 HPRD:08361 ALDH5A1 SSADH|SSDH aldehyde dehydrogenase 5 family, member A1 protein-coding 13-PTNLD9-TUMOR_peak_46770 chr7 4918837 4918952 + 8.69398 NA intron (NM_018059, intron 1 of 14) intron (NM_018059, intron 1 of 14) 4441 NM_018059 55698 Hs.667336 NM_018059 HPRD:07663 RADIL RASIP2 Ras association and DIL domains protein-coding 13-PTNLD9-TUMOR_peak_30775 chr20 31240842 31240956 + 8.69398 NA Intergenic Intergenic -1116 NM_182584 284805 Hs.353262 NM_182584 C20orf203 - chromosome 20 open reading frame 203 protein-coding 13-PTNLD9-TUMOR_peak_22996 chr18 40229668 40229964 + 8.69398 NA intron (NR_046174, intron 7 of 9) L2a|LINE|L2 463183 NR_046457 284260 Hs.652819 NR_046174 ENSG00000267586 LINC00907 - long intergenic non-protein coding RNA 907 ncRNA 13-PTNLD9-TUMOR_peak_50476 chr8 28488736 28489030 + 8.69398 NA Intergenic Intergenic -70107 NR_073469 2137 Hs.491354 NM_001440 HPRD:09306 EXTL3 BOTV|EXTL1L|EXTR1|REGR|RPR exostosin-like glycosyltransferase 3 protein-coding 13-PTNLD9-TUMOR_peak_54891 chr9 132168696 132168918 + 8.69398 NA Intergenic L2b|LINE|L2 69605 NR_120686 100506119 Hs.624047 NR_120685 LINC01503 - long intergenic non-protein coding RNA 1503 ncRNA 13-PTNLD9-TUMOR_peak_53040 chr9 33430978 33431220 + 8.69398 NA Intergenic Intergenic 16532 NM_004925 360 Hs.234642 NM_004925 HPRD:08970 AQP3 AQP-3|GIL aquaporin 3 (Gill blood group) protein-coding 13-PTNLD9-TUMOR_peak_56075 chrX 68149517 68149636 + 8.69398 NA Intergenic Intergenic 100736 NM_004429 1947 Hs.144700 NM_004429 HPRD:02072 EFNB1 CFND|CFNS|EFB1|EFL3|EPLG2|Elk-L|LERK2 ephrin-B1 protein-coding 13-PTNLD9-TUMOR_peak_48556 chr7 100527257 100527377 + 8.69398 NA Intergenic MER4D1|LTR|ERV1 -19735 NM_005960 4584 Hs.744422 NM_005960 MUC3A MUC-3A|MUC3 mucin 3A, cell surface associated protein-coding 13-PTNLD9-TUMOR_peak_13518 chr12 96018465 96018636 + 8.69398 NA Intergenic Intergenic -24481 NR_077225 100132594 Hs.676211 NR_077225 ENSG00000257150 PGAM1P5 - phosphoglycerate mutase 1 pseudogene 5 pseudo 13-PTNLD9-TUMOR_peak_16791 chr15 23016896 23017015 + 8.69398 NA intron (NM_001008894, intron 2 of 4) MLT1F|LTR|ERVL-MaLR 17472 NM_001008894 81614 Hs.591003 NM_030922 HPRD:16290 NIPA2 - non imprinted in Prader-Willi/Angelman syndrome 2 protein-coding 13-PTNLD9-TUMOR_peak_26543 chr2 34016840 34017013 + 8.69398 NA Intergenic Intergenic -63642 NR_003143 151325 Hs.528847 NM_207329 HPRD:14793 MYADML - myeloid-associated differentiation marker-like (pseudogene) pseudo 13-PTNLD9-TUMOR_peak_52710 chr9 6716019 6716247 + 8.69398 NA Intergenic CpG -4730 NM_001146696 23081 Hs.709425 NM_015061 HPRD:12016 KDM4C GASC1|JHDM3C|JMJD2C|TDRD14C|bA146B14.1 lysine (K)-specific demethylase 4C protein-coding 13-PTNLD9-TUMOR_peak_19612 chr16 67906892 67906997 + 8.69398 NA promoter-TSS (NM_014329) promoter-TSS (NM_014329) 18 NM_014329 23644 Hs.75682 NM_014329 HPRD:06911 EDC4 GE1|Ge-1|HEDL5|HEDLS|RCD-8|RCD8 enhancer of mRNA decapping 4 protein-coding 13-PTNLD9-TUMOR_peak_42631 chr5 149815785 149815962 + 8.69398 NA Intergenic Intergenic 13446 NM_005617 6208 Hs.744846 NM_005617 HPRD:00562 RPS14 EMTB|S14 ribosomal protein S14 protein-coding 13-PTNLD9-TUMOR_peak_35447 chr3 115155605 115155714 + 8.69398 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -186492 NM_002045 2596 Hs.134974 NM_002045 HPRD:01198 GAP43 B-50|PP46 growth associated protein 43 protein-coding 13-PTNLD9-TUMOR_peak_5862 chr1 233431246 233431538 + 8.69314 NA promoter-TSS (NM_014801) promoter-TSS (NM_014801) 67 NM_014801 80003 Hs.370605 NM_014801 HPRD:15108 PCNXL2 - pecanex-like 2 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_43956 chr6 16724245 16724451 + 8.69314 NA intron (NM_001128164, intron 2 of 7) intron (NM_001128164, intron 2 of 7) 37373 NM_001128164 6310 Hs.434961 NM_000332 HPRD:03333 ATXN1 ATX1|D6S504E|SCA1 ataxin 1 protein-coding 13-PTNLD9-TUMOR_peak_19273 chr16 48400495 48400618 + 8.69314 NA promoter-TSS (NM_001006610) promoter-TSS (NM_001006610) -772 NM_001006610 6477 Hs.706828 NM_003031 HPRD:03736 SIAH1 SIAH1A siah E3 ubiquitin protein ligase 1 protein-coding 13-PTNLD9-TUMOR_peak_42162 chr5 134734825 134735230 + 8.69314 NA promoter-TSS (NM_138610) promoter-TSS (NM_138610) -99 NM_001040158 9555 Hs.420272 NM_004893 HPRD:13624 H2AFY H2A.y|H2A/y|H2AF12M|H2AFJ|MACROH2A1.1|mH2A1|macroH2A1.2 H2A histone family, member Y protein-coding 13-PTNLD9-TUMOR_peak_21021 chr17 38675029 38675152 + 8.69314 NA Intergenic Intergenic -17236 NM_032865 84951 Hs.438292 NM_032865 HPRD:12223 TNS4 CTEN tensin 4 protein-coding 13-PTNLD9-TUMOR_peak_40260 chr5 9046890 9047077 + 8.69314 NA intron (NM_003966, intron 21 of 22) intron (NM_003966, intron 21 of 22) 7024 NR_039779 100616326 NR_039779 MIR4636 - microRNA 4636 ncRNA 13-PTNLD9-TUMOR_peak_148 chr1 2574068 2574203 + 8.69314 NA intron (NM_001242672, intron 6 of 6) CpG -9654 NM_033467 79258 Hs.591453 NM_033467 HPRD:07024 MMEL1 MMEL2|NEP2|NEPII|NL1|NL2|SEP membrane metallo-endopeptidase-like 1 protein-coding 13-PTNLD9-TUMOR_peak_8364 chr10 115300710 115300878 + 8.69314 NA Intergenic L2c|LINE|L2 -9796 NM_001177660 3026 Hs.422542 NM_004132 HPRD:04890 HABP2 FSAP|HABP|HGFAL|PHBP hyaluronan binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_16556 chr14 100001375 100001501 + 8.69314 NA intron (NM_001144995, intron 2 of 5) intron (NM_001144995, intron 2 of 5) 53699 NM_001099402 8812 Hs.510409 NM_003858 CCNK CPR4 cyclin K protein-coding 13-PTNLD9-TUMOR_peak_3636 chr1 151707614 151707826 + 8.69314 NA Intergenic Intergenic 13707 NM_001144956 284485 Hs.297967 NM_001144956 ENSG00000178796 RIIAD1 C1orf230|NCRNA00166 regulatory subunit of type II PKA R-subunit (RIIa) domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_40199 chr5 1641747 1641901 + 8.68945 NA Intergenic Intergenic -7704 NR_003713 728613 Hs.720393 NR_003713 LOC728613 - programmed cell death 6 pseudogene pseudo 13-PTNLD9-TUMOR_peak_11609 chr11 128799969 128800271 + 8.68945 NA Intergenic Intergenic 7609 NM_001195194 63970 Hs.160953 NM_022112 HPRD:10397 TP53AIP1 P53AIP1 tumor protein p53 regulated apoptosis inducing protein 1 protein-coding 13-PTNLD9-TUMOR_peak_16674 chr14 105444720 105444819 + 8.68945 NA promoter-TSS (NM_138420) promoter-TSS (NM_138420) -75 NM_138420 113146 Hs.441783 NM_138420 ENSG00000185567 AHNAK2 C14orf78 AHNAK nucleoprotein 2 protein-coding 13-PTNLD9-TUMOR_peak_54970 chr9 136010800 136011042 + 8.68945 NA intron (NM_001042368, intron 1 of 17) intron (NM_001042368, intron 1 of 17) -4377 NM_001271774 5900 Hs.106185 NM_006266 HPRD:03371 RALGDS RGDS|RGF|RalGEF ral guanine nucleotide dissociation stimulator protein-coding 13-PTNLD9-TUMOR_peak_37972 chr4 10034860 10035061 + 8.68945 NA intron (NM_001001290, intron 1 of 12) intron (NM_001001290, intron 1 of 12) 6912 NM_001001290 56606 Hs.656895 NM_020041 HPRD:05848 SLC2A9 GLUT9|GLUTX|UAQTL2|URATv1 solute carrier family 2 (facilitated glucose transporter), member 9 protein-coding 13-PTNLD9-TUMOR_peak_26464 chr2 29336202 29336477 + 8.68945 NA intron (NM_001287528, intron 1 of 14) intron (NM_001287528, intron 1 of 14) -1405 NR_109844 79745 Hs.122927 NM_024692 HPRD:08634 CLIP4 RSNL2 CAP-GLY domain containing linker protein family, member 4 protein-coding 13-PTNLD9-TUMOR_peak_12816 chr12 52601744 52602015 + 8.68772 NA intron (NM_001242696, intron 2 of 3) intron (NM_001242696, intron 2 of 3) 2760 NM_001242696 283403 Hs.667179 NM_001242696 C12orf80 - chromosome 12 open reading frame 80 protein-coding 13-PTNLD9-TUMOR_peak_1123 chr1 36555282 36555387 + 8.68772 NA intron (NM_017825, intron 1 of 5) L2|LINE|L2 881 NM_017825 54936 Hs.18021 NM_017825 HPRD:12432 ADPRHL2 ARH3 ADP-ribosylhydrolase like 2 protein-coding 13-PTNLD9-TUMOR_peak_53128 chr9 35776123 35776334 + 8.68506 NA Intergenic Intergenic -16178 NM_003995 4882 Hs.78518 NM_000907 HPRD:00166 NPR2 AMDM|ANPRB|ANPb|ECDM|GUC2B|GUCY2B|NPRB|NPRBi natriuretic peptide receptor 2 protein-coding 13-PTNLD9-TUMOR_peak_6609 chr10 19002208 19002326 + 8.68506 NA Intergenic Intergenic 53954 NM_178815 221079 Hs.25362 NM_178815 HPRD:12328 ARL5B ARL8 ADP-ribosylation factor-like 5B protein-coding 13-PTNLD9-TUMOR_peak_34296 chr3 39329931 39330125 + 8.68506 NA Intergenic Intergenic -6802 NM_001171174 1524 Hs.78913 NM_001337 HPRD:03277 CX3CR1 CCRL1|CMKBRL1|CMKDR1|GPR13|GPRV28|V28 chemokine (C-X3-C motif) receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_43971 chr6 17102033 17102313 + 8.68506 NA promoter-TSS (NM_001190766) promoter-TSS (NM_001190766) -316 NM_001190766 401236 Hs.677399 NM_001190766 ENSG00000230873 STMND1 - stathmin domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_46027 chr6 126240207 126240431 + 8.68506 NA promoter-TSS (NM_001199622) promoter-TSS (NM_001199622) -51 NM_001199622 135112 Hs.171426 NM_181782 HPRD:14814 NCOA7 ERAP140|ESNA1|NCOA7-AS|Nbla00052|Nbla10993|TLDC4|dJ187J11.3 nuclear receptor coactivator 7 protein-coding 13-PTNLD9-TUMOR_peak_27746 chr2 97489846 97490104 + 8.68506 NA intron (NM_199078, intron 1 of 6) intron (NM_199078, intron 1 of 6) 7984 NM_017623 26505 Hs.711617 NM_017623 CNNM3 ACDP3 cyclin and CBS domain divalent metal cation transport mediator 3 protein-coding 13-PTNLD9-TUMOR_peak_2104 chr1 66760551 66760689 + 8.68506 NA intron (NM_001297440, intron 6 of 15) intron (NM_001297440, intron 6 of 15) -37171 NM_001037339 5142 Hs.198072 NM_002600 HPRD:02528 PDE4B DPDE4|PDEIVB phosphodiesterase 4B, cAMP-specific protein-coding 13-PTNLD9-TUMOR_peak_29181 chr2 177399976 177400101 + 8.68506 NA Intergenic Intergenic 65742 NR_031648 100302142 NR_031648 MIR1246 MIRN1246|hsa-mir-1246 microRNA 1246 ncRNA 13-PTNLD9-TUMOR_peak_2631 chr1 100196373 100196549 + 8.68506 NA intron (NM_001013660, intron 7 of 16) AluJb|SINE|Alu -17948 NR_030382 693130 NR_030382 MIR548D1 MIRN548D1 microRNA 548d-1 ncRNA 13-PTNLD9-TUMOR_peak_54756 chr9 127116324 127116453 + 8.68506 NA non-coding (NR_027406, exon 1 of 1) non-coding (NR_027406, exon 1 of 1) 636 NR_027406 100129034 Hs.654980 NR_027406 LOC100129034 - uncharacterized LOC100129034 ncRNA 13-PTNLD9-TUMOR_peak_41892 chr5 123987382 123987672 + 8.68506 NA intron (NM_020747, intron 2 of 8) CpG 93278 NM_020747 57507 Hs.266616 NM_020747 HPRD:18357 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 13-PTNLD9-TUMOR_peak_32210 chr21 35917654 35917867 + 8.68506 NA intron (NM_004414, intron 1 of 3) intron (NM_004414, intron 1 of 3) -18452 NM_203418 1827 Hs.282326 NM_004414 HPRD:04226 RCAN1 ADAPT78|CSP1|DSC1|DSCR1|MCIP1|RCN1 regulator of calcineurin 1 protein-coding 13-PTNLD9-TUMOR_peak_11461 chr11 122547471 122547638 + 8.68506 NA intron (NM_032873, intron 1 of 13) intron (NM_032873, intron 1 of 13) 21156 NM_032873 84959 Hs.444075 NM_032873 HPRD:16463 UBASH3B STS-1|STS1|TULA-2|p70 ubiquitin associated and SH3 domain containing B protein-coding 13-PTNLD9-TUMOR_peak_55606 chrX 19081276 19081397 + 8.68506 NA intron (NM_001079859, intron 3 of 27) intron (NM_001079859, intron 3 of 27) 59419 NM_001184833 10149 Hs.146978 NM_005756 HPRD:04040 GPR64 EDDM6|HE6|TM7LN2 G protein-coupled receptor 64 protein-coding 13-PTNLD9-TUMOR_peak_15488 chr14 33081039 33081255 + 8.68506 NA intron (NM_004274, intron 7 of 13) intron (NM_004274, intron 7 of 13) 282668 NM_004274 9472 Hs.509083 NM_004274 HPRD:05257 AKAP6 ADAP100|ADAP6|AKAP100|PRKA6|mAKAP A kinase (PRKA) anchor protein 6 protein-coding 13-PTNLD9-TUMOR_peak_14624 chr13 40676266 40676481 + 8.68506 NA Intergenic Intergenic -79573 NR_046870 100874127 Hs.578028 NR_046870 ENSG00000230710 LINC00332 NCRNA00332 long intergenic non-protein coding RNA 332 ncRNA 13-PTNLD9-TUMOR_peak_42307 chr5 139555028 139555455 + 8.68257 NA intron (NM_032412, intron 1 of 2) CpG 588 NM_032412 84418 Hs.529798 NM_032412 CYSTM1 C5orf32 cysteine-rich transmembrane module containing 1 protein-coding 13-PTNLD9-TUMOR_peak_35805 chr3 128097938 128098078 + 8.68257 NA intron (NM_021937, intron 6 of 6) intron (NM_021937, intron 6 of 6) -84429 NR_037890 285224 Hs.683815 NR_037890 ENSG00000242049 DNAJB8-AS1 - DNAJB8 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_18516 chr16 11406674 11406916 + 8.68257 NA Intergenic Intergenic -31603 NM_002761 5619 Hs.2909 NM_002761 HPRD:01688 PRM1 CT94.1|P1 protamine 1 protein-coding 13-PTNLD9-TUMOR_peak_32743 chr22 19811818 19811926 + 8.68257 NA intron (NM_053004, intron 2 of 7) intron (NM_053004, intron 2 of 7) 30499 NM_024627 79680 Hs.105642 NM_024627 HPRD:13382 C22orf29 BOP chromosome 22 open reading frame 29 protein-coding 13-PTNLD9-TUMOR_peak_50677 chr8 39917143 39917325 + 8.68154 NA Intergenic Intergenic -93753 NM_020130 56892 Hs.591849 NM_020130 HPRD:09650 C8orf4 TC-1|TC1 chromosome 8 open reading frame 4 protein-coding 13-PTNLD9-TUMOR_peak_10038 chr11 61809616 61809991 + 8.68154 NA Intergenic Intergenic -74671 NM_002032 2495 Hs.524910 NM_002032 HPRD:00615 FTH1 FHC|FTH|FTHL6|HFE5|PIG15|PLIF ferritin, heavy polypeptide 1 protein-coding 13-PTNLD9-TUMOR_peak_41080 chr5 65628696 65629003 + 8.68154 NA Intergenic Intergenic 178583 NR_105001 101928769 Hs.97903 NR_105001 ENSG00000250313 LOC101928769 - uncharacterized LOC101928769 ncRNA 13-PTNLD9-TUMOR_peak_34011 chr3 18486680 18486838 + 8.68154 NA promoter-TSS (NR_125803) promoter-TSS (NR_125803) 30 NR_125803 101927777 Hs.543235 NR_125803 SATB1-AS1 - SATB1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_26726 chr2 43454398 43454667 + 8.67601 NA promoter-TSS (NM_006887) promoter-TSS (NM_006887) 182 NR_027251 100129726 Hs.194480 NM_178529 LINC01126 - long intergenic non-protein coding RNA 1126 ncRNA 13-PTNLD9-TUMOR_peak_16113 chr14 69011001 69011111 + 8.67363 NA intron (NM_133509, intron 10 of 10) AmnSINE1|SINE|Deu 249575 NM_004926 677 Hs.85155 NM_004926 HPRD:03041 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein-like 1 protein-coding 13-PTNLD9-TUMOR_peak_50294 chr8 22443256 22443392 + 8.67363 NA intron (NM_176871, intron 5 of 9) intron (NM_176871, intron 5 of 9) 5337 NM_176871 64236 Hs.632034 NM_021630 HPRD:17831 PDLIM2 MYSTIQUE|SLIM PDZ and LIM domain 2 (mystique) protein-coding 13-PTNLD9-TUMOR_peak_9238 chr11 18415818 18416193 + 8.66082 NA promoter-TSS (NM_001165415) promoter-TSS (NM_001165415) 69 NM_001165415 3939 Hs.2795 NM_005566 HPRD:01025 LDHA GSD11|HEL-S-133P|LDH1|LDHM lactate dehydrogenase A protein-coding 13-PTNLD9-TUMOR_peak_45037 chr6 42657272 42657405 + 8.66082 NA exon (NM_015255, exon 46 of 47) exon (NM_015255, exon 46 of 47) 33020 NM_000322 5961 Hs.654489 NM_000322 HPRD:01553 PRPH2 AOFMD|AVMD|CACD2|DS|PRPH|RDS|RP7|TSPAN22|rd2 peripherin 2 (retinal degeneration, slow) protein-coding 13-PTNLD9-TUMOR_peak_25892 chr1_gl000192_random 475628 475803 + 8.66082 NA Intergenic Intergenic -7032 NR_120328 102724558 Hs.712738 NR_120328 LOC102724558 - uncharacterized LOC102724558 ncRNA 13-PTNLD9-TUMOR_peak_48132 chr7 79159263 79159415 + 8.65804 NA Intergenic Intergenic 76063 NR_038343 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 13-PTNLD9-TUMOR_peak_10271 chr11 65769643 65769997 + 8.65804 NA promoter-TSS (NM_001242486) promoter-TSS (NM_001242486) -183 NM_001242484 84285 Hs.425178 NM_032325 HPRD:14411 EIF1AD haponin eukaryotic translation initiation factor 1A domain containing protein-coding 13-PTNLD9-TUMOR_peak_4541 chr1 178511695 178512032 + 8.65804 NA promoter-TSS (NR_033186) promoter-TSS (NR_033186) -68 NR_033186 400798 Hs.668085 NM_207467 HPRD:13417 C1orf220 - chromosome 1 open reading frame 220 ncRNA 13-PTNLD9-TUMOR_peak_56667 chrX 152725515 152725707 + 8.65804 NA intron (NM_017518, intron 4 of 9) L1MB5|LINE|L1 10478 NM_017518 55559 Hs.170835 NM_017518 HPRD:18695 HAUS7 UCHL5IP|UIP1 HAUS augmin-like complex, subunit 7 protein-coding 13-PTNLD9-TUMOR_peak_23569 chr19 244749 244863 + 8.65804 NA Intergenic Intergenic -42597 NR_028324 399844 Hs.356758 NM_001004321 LINC01002 - long intergenic non-protein coding RNA 1002 ncRNA 13-PTNLD9-TUMOR_peak_43218 chr5 177168197 177168623 + 8.65804 NA intron (NM_173663, intron 5 of 19) intron (NM_173663, intron 5 of 19) 39095 NM_173663 285596 Hs.368516 NM_173663 HPRD:14870 FAM153A NY-REN-7 family with sequence similarity 153, member A protein-coding 13-PTNLD9-TUMOR_peak_19958 chr16 84918212 84918566 + 8.65804 NA intron (NM_031476, intron 13 of 14) intron (NM_031476, intron 13 of 14) 64802 NM_031476 83716 Hs.513779 NM_031476 HPRD:13186 CRISPLD2 CRISP11|LCRISP2 cysteine-rich secretory protein LCCL domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_35539 chr3 121714345 121714589 + 8.65537 NA intron (NM_001199800, intron 3 of 5) intron (NM_001199800, intron 3 of 5) 26660 NM_001199800 286676 Hs.98484 NM_175924 HPRD:13735 ILDR1 DFNB42|ILDR1alpha|ILDR1alpha'|ILDR1beta immunoglobulin-like domain containing receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_22916 chr18 32923907 32924060 + 8.65537 NA intron (NM_006965, intron 1 of 3) CpG 443 NM_006965 7572 Hs.514802 NM_006965 HPRD:01921 ZNF24 KOX17|RSG-A|ZNF191|ZSCAN3|Zfp191 zinc finger protein 24 protein-coding 13-PTNLD9-TUMOR_peak_38697 chr4 81123368 81123557 + 8.65537 NA exon (NM_001099403, exon 4 of 4) exon (NM_001099403, exon 4 of 4) 4805 NM_001099403 56978 Hs.373642 NM_020226 HPRD:17904 PRDM8 PFM5 PR domain containing 8 protein-coding 13-PTNLD9-TUMOR_peak_29106 chr2 173913987 173914299 + 8.65537 NA intron (NM_001282901, intron 24 of 24) intron (NM_001282901, intron 24 of 24) -26422 NM_133646 51776 Hs.444451 NM_016653 HPRD:11791 ZAK AZK|MLK7|MLT|MLTK|MRK|mlklak|pk sterile alpha motif and leucine zipper containing kinase AZK protein-coding 13-PTNLD9-TUMOR_peak_35659 chr3 124793327 124793654 + 8.65537 NA Intergenic Intergenic -18688 NM_020733 57493 Hs.477420 NM_020733 ENSG00000173706 HEG1 HEG|MST112|MSTP112 heart development protein with EGF-like domains 1 protein-coding 13-PTNLD9-TUMOR_peak_29843 chr2 219610670 219610879 + 8.65537 NA intron (NM_014640, intron 7 of 19) intron (NM_014640, intron 7 of 19) 35206 NM_014640 9654 Hs.471405 NM_014640 HPRD:15586 TTLL4 - tubulin tyrosine ligase-like family, member 4 protein-coding 13-PTNLD9-TUMOR_peak_5109 chr1 203619582 203619889 + 8.65537 NA intron (NM_001684, intron 1 of 20) intron (NM_001684, intron 1 of 20) 23820 NM_001684 493 Hs.343522 NM_001684 HPRD:00159 ATP2B4 ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x ATPase, Ca++ transporting, plasma membrane 4 protein-coding 13-PTNLD9-TUMOR_peak_43342 chr5 180253282 180253534 + 8.65537 NA Intergenic Intergenic -4549 NR_045678 729678 Hs.348292 NR_027183 ENSG00000245060 LINC00847 - long intergenic non-protein coding RNA 847 ncRNA 13-PTNLD9-TUMOR_peak_195 chr1 6345501 6345755 + 8.65537 NA intron (NM_181866, intron 7 of 8) intron (NM_181866, intron 7 of 8) -24593 NM_207370 387509 Hs.531581 NM_207370 HPRD:13600 GPR153 PGR1 G protein-coupled receptor 153 protein-coding 13-PTNLD9-TUMOR_peak_20674 chr17 21191202 21191467 + 8.65395 NA promoter-TSS (NM_002756) promoter-TSS (NM_002756) -14 NM_002756 5606 Hs.514012 NM_002756 HPRD:03816 MAP2K3 MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2 mitogen-activated protein kinase kinase 3 protein-coding 13-PTNLD9-TUMOR_peak_3371 chr1 146894989 146895177 + 8.65381 NA intron (NR_038423, intron 3 of 3) L1PA2|LINE|L1 94616 NR_038423 100289211 Hs.323484 NR_038423 LINC00624 - long intergenic non-protein coding RNA 624 ncRNA 13-PTNLD9-TUMOR_peak_52511 chr8 145489167 145489403 + 8.65381 NA intron (NM_015201, intron 3 of 15) intron (NM_015201, intron 3 of 15) -1262 NM_001080514 642658 Hs.553250 NM_001008271 ENSG00000187786 SCX SCXA|SCXB|bHLHa48 scleraxis basic helix-loop-helix transcription factor protein-coding 13-PTNLD9-TUMOR_peak_202 chr1 6532162 6532385 + 8.65381 NA intron (NM_001042664, intron 10 of 20) intron (NM_001042664, intron 10 of 20) -6018 NM_148970 8718 Hs.462529 NM_003790 HPRD:04532 TNFRSF25 APO-3|DDR3|DR3|LARD|TNFRSF12|TR3|TRAMP|WSL-1|WSL-LR tumor necrosis factor receptor superfamily, member 25 protein-coding 13-PTNLD9-TUMOR_peak_41201 chr5 70694228 70694472 + 8.65266 NA Intergenic L2a|LINE|L2 22738 NR_003922 5370 Hs.742169 NM_031888 HPRD:15941 PMCHL2 - pro-melanin-concentrating hormone-like 2, pseudogene pseudo 13-PTNLD9-TUMOR_peak_22367 chr17 80739796 80739903 + 8.65266 NA intron (NM_005993, intron 7 of 38) intron (NM_005993, intron 7 of 38) 29909 NM_005993 6904 Hs.464391 NM_005993 HPRD:05227 TBCD SSD-1|tfcD tubulin folding cofactor D protein-coding 13-PTNLD9-TUMOR_peak_23757 chr19 5828149 5828374 + 8.65266 NA TTS (NM_004558) TTS (NM_004558) 4443 NM_004558 4902 Hs.234775 NM_004558 HPRD:03604 NRTN NTN neurturin protein-coding 13-PTNLD9-TUMOR_peak_11419 chr11 120008975 120009188 + 8.65266 NA promoter-TSS (NM_012101) promoter-TSS (NM_012101) -218 NM_012101 23650 Hs.504115 NM_012101 HPRD:10280 TRIM29 ATDC tripartite motif containing 29 protein-coding 13-PTNLD9-TUMOR_peak_30131 chr2 239064109 239064381 + 8.65266 NA Intergenic Intergenic -3404 NM_001291832 151176 Hs.24951 NM_152521 FAM132B C1QTNF15|CTRP15 family with sequence similarity 132, member B protein-coding 13-PTNLD9-TUMOR_peak_9481 chr11 34009676 34009770 + 8.65266 NA Intergenic Intergenic -63507 NM_005898 4076 Hs.471818 NM_005898 HPRD:03108 CAPRIN1 GPIAP1|GPIP137|GRIP137|M11S1|RNG105|p137GPI cell cycle associated protein 1 protein-coding 13-PTNLD9-TUMOR_peak_46138 chr6 138409504 138409876 + 8.65266 NA TTS (NM_022121) TTS (NM_022121) 18970 NM_022121 64065 Hs.201446 NM_022121 HPRD:17836 PERP KCP1|KRTCAP1|PIGPC1|THW|dJ496H19.1 PERP, TP53 apoptosis effector protein-coding 13-PTNLD9-TUMOR_peak_27975 chr2 109801970 109802119 + 8.65266 NA intron (NM_001099289, intron 1 of 9) intron (NM_001099289, intron 1 of 9) -44000 NR_036223 100422863 NR_036223 miRBase:MI0015869 MIR4265 - microRNA 4265 ncRNA 13-PTNLD9-TUMOR_peak_38244 chr4 41941272 41941425 + 8.65266 NA exon (NM_018126, exon 3 of 7) exon (NM_018126, exon 3 of 7) 4211 NM_018126 55161 Hs.31082 NM_018126 HPRD:07680 TMEM33 1600019D15Rik|SHINC3 transmembrane protein 33 protein-coding 13-PTNLD9-TUMOR_peak_22734 chr18 19889286 19889488 + 8.65266 NA Intergenic Intergenic 108491 NM_172241 64693 Hs.406709 NM_022663 HPRD:16395 CTAGE1 CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2 cutaneous T-cell lymphoma-associated antigen 1 protein-coding 13-PTNLD9-TUMOR_peak_23037 chr18 43407815 43407921 + 8.65266 NA intron (NM_213602, intron 1 of 5) intron (NM_213602, intron 1 of 5) 2323 NM_213602 284266 Hs.287692 NM_213602 HPRD:13011 SIGLEC15 CD33L3|HsT1361|SIGLEC-15 sialic acid binding Ig-like lectin 15 protein-coding 13-PTNLD9-TUMOR_peak_41521 chr5 92435721 92435949 + 8.65266 NA Intergenic Intergenic 471214 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_41921 chr5 125703948 125704106 + 8.65266 NA intron (NM_001146319, intron 1 of 13) intron (NM_001146319, intron 1 of 13) 8239 NM_001146319 65983 Hs.363558 NM_023927 HPRD:11402 GRAMD3 NS3TP2 GRAM domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_7143 chr10 43521778 43522190 + 8.65266 NA Intergenic L2b|LINE|L2 28973 NR_049836 100847014 NR_049836 miRBase:MI0019116 MIR5100 - microRNA 5100 ncRNA 13-PTNLD9-TUMOR_peak_36164 chr3 140166108 140166240 + 8.65266 NA intron (NM_022131, intron 5 of 16) intron (NM_022131, intron 5 of 16) 61457 NR_108084 101927808 Hs.581236 NR_108084 ENSG00000250433 CLSTN2-AS1 - CLSTN2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_50250 chr8 21867743 21867892 + 8.65266 NA Intergenic CpG -13804 NM_001286680 10361 Hs.131055 NM_182795 HPRD:12160 NPM2 - nucleophosmin/nucleoplasmin 2 protein-coding 13-PTNLD9-TUMOR_peak_35117 chr3 93692733 93692865 + 8.65266 NA 5' UTR (NM_000313, exon 1 of 15) 5' UTR (NM_000313, exon 1 of 15) 135 NM_000313 5627 Hs.64016 NM_000313 HPRD:01473 PROS1 PROS|PS21|PS22|PS23|PS24|PS25|PSA|THPH5|THPH6 protein S (alpha) protein-coding 13-PTNLD9-TUMOR_peak_42953 chr5 169638653 169638909 + 8.65266 NA Intergenic Charlie8|DNA|hAT-Charlie -12636 NR_108022 100507267 Hs.634846 NR_108022 LINC01187 CTB-27N1.1|KIDR long intergenic non-protein coding RNA 1187 ncRNA 13-PTNLD9-TUMOR_peak_27033 chr2 62520913 62521119 + 8.65266 NA Intergenic Intergenic 88055 NR_049824 100847087 NR_049824 miRBase:MI0018171 MIR5192 - microRNA 5192 ncRNA 13-PTNLD9-TUMOR_peak_20562 chr17 17614250 17614482 + 8.65266 NA intron (NM_030665, intron 1 of 5) intron (NM_030665, intron 1 of 5) 29579 NM_030665 10743 Hs.655395 NM_030665 HPRD:07406 RAI1 SMCR|SMS retinoic acid induced 1 protein-coding 13-PTNLD9-TUMOR_peak_48236 chr7 87918956 87919259 + 8.65235 NA intron (NM_024636, intron 1 of 4) intron (NM_024636, intron 1 of 4) 17121 NM_024636 79689 Hs.521008 NM_024636 HPRD:11637 STEAP4 STAMP2|TIARP|TNFAIP9 STEAP family member 4 protein-coding 13-PTNLD9-TUMOR_peak_35189 chr3 100053497 100053935 + 8.64765 NA intron (NM_020202, intron 1 of 9) CpG 154 NM_020202 56954 Hs.439152 NM_020202 NIT2 HEL-S-8a nitrilase family, member 2 protein-coding 13-PTNLD9-TUMOR_peak_18140 chr16 412262 412413 + 8.64765 NA Intergenic Intergenic 8232 NM_006428 10573 Hs.513230 NM_006428 ENSG00000086504 MRPL28 MAAT1|p15 mitochondrial ribosomal protein L28 protein-coding 13-PTNLD9-TUMOR_peak_25324 chr19 49238281 49238429 + 8.64765 NA intron (NM_017805, intron 4 of 11) intron (NM_017805, intron 4 of 11) 5615 NM_017805 54922 Hs.233955 NM_017805 HPRD:15214 RASIP1 RAIN Ras interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_51609 chr8 110986676 110986835 + 8.64765 NA 5' UTR (NM_014379, exon 1 of 3) 5' UTR (NM_014379, exon 1 of 3) 204 NM_014379 27012 Hs.13285 NM_014379 HPRD:16293 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium channel, subfamily V, member 1 protein-coding 13-PTNLD9-TUMOR_peak_31691 chr20 56385934 56386136 + 8.64765 NA Intergenic MLT1J|LTR|ERVL-MaLR -84415 NR_039757 100616353 NR_039757 miRBase:MI0016899 MIR4532 - microRNA 4532 ncRNA 13-PTNLD9-TUMOR_peak_22681 chr18 14458638 14458980 + 8.64765 NA Intergenic CpG 39896 NR_024076 440224 Hs.721675 NR_024076 ENSG00000265766 CXADRP3 - coxsackie virus and adenovirus receptor pseudogene 3 pseudo 13-PTNLD9-TUMOR_peak_21398 chr17 47585902 47586267 + 8.63772 NA intron (NM_002507, intron 3 of 5) intron (NM_002507, intron 3 of 5) -2095 NR_106751 102465141 NR_106751 MIR6165 hsa-mir-6165 microRNA 6165 ncRNA 13-PTNLD9-TUMOR_peak_8077 chr10 97803336 97803634 + 8.63772 NA intron (NM_019084, intron 1 of 5) CpG 326 NM_019084 54619 Hs.596479 NM_019084 HPRD:07710 CCNJ bA690P14.1 cyclin J protein-coding 13-PTNLD9-TUMOR_peak_33311 chr22 40783827 40784085 + 8.63772 NA intron (NM_015705, intron 1 of 21) intron (NM_015705, intron 1 of 21) 17361 NM_015705 27352 Hs.474914 NM_015705 HPRD:15285 SGSM3 MAP|RABGAP5|RUSC3|RUTBC3|RabGAP-5 small G protein signaling modulator 3 protein-coding 13-PTNLD9-TUMOR_peak_31941 chr21 15112593 15112761 + 8.63772 NA Intergenic Intergenic 16167 NR_107036 102466252 NR_107036 MIR8069-1 MIR8069|hsa-mir-8069 microRNA 8069-1 ncRNA 13-PTNLD9-TUMOR_peak_31023 chr20 37893187 37893480 + 8.63772 NA Intergenic Intergenic -39942 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LOC339568 - uncharacterized LOC339568 ncRNA 13-PTNLD9-TUMOR_peak_11521 chr11 124940646 124940911 + 8.63772 NA intron (NM_198277, intron 1 of 18) intron (NM_198277, intron 1 of 18) 7765 NM_198277 219855 Hs.352661 NM_198277 SLC37A2 pp11662 solute carrier family 37 (glucose-6-phosphate transporter), member 2 protein-coding 13-PTNLD9-TUMOR_peak_14511 chr13 30451738 30452095 + 8.63772 NA intron (NR_046510, intron 1 of 1) intron (NR_046510, intron 1 of 1) 10626 NR_046510 100874059 Hs.569261 NR_046510 ENSG00000224329 LINC00297 NCRNA00297 long intergenic non-protein coding RNA 297 ncRNA 13-PTNLD9-TUMOR_peak_39876 chr4 174133139 174133250 + 8.63772 NA intron (NM_017423, intron 1 of 11) intron (NM_017423, intron 1 of 11) 43290 NM_017423 51809 Hs.548088 NM_017423 HPRD:10386 GALNT7 GALNAC-T7|GalNAcT7 polypeptide N-acetylgalactosaminyltransferase 7 protein-coding 13-PTNLD9-TUMOR_peak_38674 chr4 79269233 79269419 + 8.63772 NA intron (NM_001166133, intron 20 of 41) L1HS|LINE|L1 -203416 NM_005139 306 Hs.480042 NM_005139 HPRD:00111 ANXA3 ANX3 annexin A3 protein-coding 13-PTNLD9-TUMOR_peak_26088 chr2 10302340 10302572 + 8.63772 NA intron (NM_182626, intron 2 of 2) intron (NM_182626, intron 2 of 2) 20475 NM_182626 348738 Hs.454981 NM_182626 HPRD:08049 C2orf48 - chromosome 2 open reading frame 48 protein-coding 13-PTNLD9-TUMOR_peak_7725 chr10 73975990 73976146 + 8.63772 NA promoter-TSS (NM_001198798) promoter-TSS (NM_001198798) 131 NM_001198799 51008 Hs.500007 NM_015947 ASCC1 ASC1p50|p50 activating signal cointegrator 1 complex subunit 1 protein-coding 13-PTNLD9-TUMOR_peak_48774 chr7 106675918 106676083 + 8.63772 NA Intergenic L2c|LINE|L2 -9178 NM_002736 5577 Hs.433068 NM_002736 HPRD:01486 PRKAR2B PRKAR2|RII-BETA protein kinase, cAMP-dependent, regulatory, type II, beta protein-coding 13-PTNLD9-TUMOR_peak_6342 chr10 4746362 4746624 + 8.63772 NA Intergenic Intergenic -26231 NR_024475 100216001 Hs.634869 NR_024475 ENSG00000231298 LINC00704 - long intergenic non-protein coding RNA 704 ncRNA 13-PTNLD9-TUMOR_peak_16433 chr14 91002632 91002785 + 8.63772 NA Intergenic L2a|LINE|L2 81134 NR_033986 400238 Hs.131037 NR_033986 ENSG00000233208 LINC00642 - long intergenic non-protein coding RNA 642 ncRNA 13-PTNLD9-TUMOR_peak_18849 chr16 27297889 27298039 + 8.63772 NA intron (NR_037184, intron 2 of 4) intron (NR_037184, intron 2 of 4) -17851 NM_145080 197370 Hs.284295 NM_145080 HPRD:17648 NSMCE1 NSE1 non-SMC element 1 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_48014 chr7 75575570 75575773 + 8.63528 NA intron (NM_000941, intron 1 of 15) AluJb|SINE|Alu 2570 NR_002955 677801 Hs.689708 NR_002955 ENSG00000201643 SNORA14A ACA14a small nucleolar RNA, H/ACA box 14A snoRNA 13-PTNLD9-TUMOR_peak_949 chr1 32041910 32042161 + 8.63528 NA promoter-TSS (NM_022164) promoter-TSS (NM_022164) -51 NM_001204414 64129 Hs.199368 NM_022164 HPRD:07122 TINAGL1 ARG1|LCN7|LIECG3|TINAGRP tubulointerstitial nephritis antigen-like 1 protein-coding 13-PTNLD9-TUMOR_peak_24317 chr19 17438581 17438860 + 8.63528 NA intron (NM_020959, intron 13 of 17) CpG-13209 6918 NM_020959 57719 Hs.590990 NM_020959 HPRD:17223 ANO8 KIAA1623|TMEM16H anoctamin 8 protein-coding 13-PTNLD9-TUMOR_peak_9633 chr11 44590832 44590991 + 8.62765 NA intron (NM_001024844, intron 1 of 8) intron (NM_001024844, intron 1 of 8) 3770 NM_001024844 3732 Hs.527778 NM_002231 CD82 4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27 CD82 molecule protein-coding 13-PTNLD9-TUMOR_peak_10330 chr11 66846220 66846393 + 8.62765 NA Intergenic Intergenic 22017 NM_001300886 29984 Hs.15114 NM_014578 HPRD:05776 RHOD ARHD|RHOHP1|RHOM|Rho ras homolog family member D protein-coding 13-PTNLD9-TUMOR_peak_10240 chr11 65405354 65405627 + 8.62765 NA promoter-TSS (NM_006747) promoter-TSS (NM_006747) -88 NM_006747 6494 Hs.530477 NM_006747 HPRD:03713 SIPA1 SPA1 signal-induced proliferation-associated 1 protein-coding 13-PTNLD9-TUMOR_peak_49195 chr7 134378186 134378316 + 8.62765 NA Intergenic Intergenic 46720 NM_001293085 669 Hs.198365 NM_001724 HPRD:01961 BPGM DPGM 2,3-bisphosphoglycerate mutase protein-coding 13-PTNLD9-TUMOR_peak_28746 chr2 153032444 153032667 + 8.62765 NA promoter-TSS (NM_005843) promoter-TSS (NM_005843) -49 NM_005843 10254 Hs.17200 NM_005843 HPRD:05876 STAM2 Hbp|STAM2A|STAM2B signal transducing adaptor molecule (SH3 domain and ITAM motif) 2 protein-coding 13-PTNLD9-TUMOR_peak_9420 chr11 32139869 32140095 + 8.62765 NA Intergenic Intergenic 27505 NM_002901 5954 Hs.97887 NM_002901 HPRD:04111 RCN1 HEL-S-84|PIG20|RCAL|RCN reticulocalbin 1, EF-hand calcium binding domain protein-coding 13-PTNLD9-TUMOR_peak_46891 chr7 11012831 11012934 + 8.62765 NA promoter-TSS (NR_033436) promoter-TSS (NR_033436) -617 NM_014660 9678 Hs.655688 NM_014660 HPRD:17845 PHF14 - PHD finger protein 14 protein-coding 13-PTNLD9-TUMOR_peak_18741 chr16 21801925 21802158 + 8.62575 NA Intergenic MLT1J|LTR|ERVL-MaLR 28454 NR_003370 730092 Hs.31290 NR_003370 RRN3P1 - RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_2777 chr1 110162266 110162436 + 8.62575 NA promoter-TSS (NM_004037) promoter-TSS (NM_004037) -84 NM_001257360 271 Hs.82927 NM_004037 HPRD:11808 AMPD2 PCH9|SPG63 adenosine monophosphate deaminase 2 protein-coding 13-PTNLD9-TUMOR_peak_11848 chr12 3229337 3229836 + 8.62575 NA intron (NM_006675, intron 2 of 8) intron (NM_006675, intron 2 of 8) 43065 NM_006675 10867 Hs.504517 NM_006675 HPRD:14823 TSPAN9 NET-5|NET5|PP1057 tetraspanin 9 protein-coding 13-PTNLD9-TUMOR_peak_40174 chr5 1129839 1130060 + 8.62027 NA Intergenic Intergenic -17777 NM_006598 10723 Hs.172613 NM_006598 HPRD:09221 SLC12A7 KCC4 solute carrier family 12 (potassium/chloride transporter), member 7 protein-coding 13-PTNLD9-TUMOR_peak_3872 chr1 155449108 155449266 + 8.61841 NA exon (NM_018489, exon 3 of 28) exon (NM_018489, exon 3 of 28) 46216 NR_034180 645682 Hs.632482 NR_034180 ENSG00000237872 POU5F1P4 Oct4-pg4|POU5FLC1 POU class 5 homeobox 1 pseudogene 4 pseudo 13-PTNLD9-TUMOR_peak_13827 chr12 110841405 110841515 + 8.61841 NA promoter-TSS (NM_016238) promoter-TSS (NM_016238) 75 NM_001137664 51434 Hs.719935 NM_016238 HPRD:16233 ANAPC7 APC7 anaphase promoting complex subunit 7 protein-coding 13-PTNLD9-TUMOR_peak_45866 chr6 109268814 109268913 + 8.61841 NA intron (NM_032131, intron 12 of 17) intron (NM_032131, intron 12 of 17) -23557 NR_104137 101929716 NR_104137 ARMC2-AS1 - ARMC2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_39117 chr4 114395229 114395505 + 8.61841 NA intron (NM_172114, intron 15 of 17) intron (NM_172114, intron 15 of 17) 287716 NM_172127 817 Hs.144114 NM_001221 HPRD:09653 CAMK2D CAMKD calcium/calmodulin-dependent protein kinase II delta protein-coding 13-PTNLD9-TUMOR_peak_4952 chr1 201377474 201377577 + 8.61841 NA 3' UTR (NM_003281, exon 8 of 8) 3' UTR (NM_003281, exon 8 of 8) -8856 NM_005558 3898 Hs.519035 NM_005558 HPRD:03815 LAD1 LadA ladinin 1 protein-coding 13-PTNLD9-TUMOR_peak_31787 chr20 61505154 61505268 + 8.61841 NA Intergenic LTR13|LTR|ERVK -12096 NM_006602 10732 Hs.126248 NM_006602 HPRD:05297 TCFL5 CHA|E2BP-1|Figlb|bHLHe82 transcription factor-like 5 (basic helix-loop-helix) protein-coding 13-PTNLD9-TUMOR_peak_22846 chr18 26734897 26735224 + 8.61841 NA Intergenic L3|LINE|CR1 -977615 NM_001792 1000 Hs.464829 NM_001792 HPRD:00226 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2, type 1, N-cadherin (neuronal) protein-coding 13-PTNLD9-TUMOR_peak_32864 chr22 22020476 22020610 + 8.61357 NA intron (NM_148175, intron 1 of 20) CpG 270 NM_148176 23759 Hs.438587 NM_014337 HPRD:08472 PPIL2 CYC4|CYP60|Cyp-60|UBOX7|hCyP-60 peptidylprolyl isomerase (cyclophilin)-like 2 protein-coding 13-PTNLD9-TUMOR_peak_17003 chr15 34517000 34517458 + 8.61357 NA promoter-TSS (NM_001286420) promoter-TSS (NM_001286420) 31 NM_001286420 51234 Hs.250905 NM_016454 HPRD:14233 EMC4 PIG17|TMEM85 ER membrane protein complex subunit 4 protein-coding 13-PTNLD9-TUMOR_peak_23875 chr19 9136973 9137271 + 8.61357 NA Intergenic MLT1F2|LTR|ERVL-MaLR -45104 NM_024690 94025 Hs.432676 NM_024690 ENSG00000181143 MUC16 CA125 mucin 16, cell surface associated protein-coding 13-PTNLD9-TUMOR_peak_32147 chr21 33893842 33894029 + 8.61357 NA Intergenic Intergenic 63910 NM_144659 140290 Hs.728804 NM_018277 TCP10L C21orf77|TCP10A-2 t-complex 10-like protein-coding 13-PTNLD9-TUMOR_peak_37994 chr4 10830668 10831013 + 8.61357 NA Intergenic L1PA2|LINE|L1 -144454 NM_052964 116449 Hs.678910 NM_052964 CLNK MIST cytokine-dependent hematopoietic cell linker protein-coding 13-PTNLD9-TUMOR_peak_24046 chr19 12400174 12400312 + 8.61357 NA intron (NM_016264, intron 1 of 3) MER92B|LTR|ERV1 5471 NM_001164276 51710 Hs.296731 NM_016264 HPRD:01927 ZNF44 GIOT-2|KOX7|ZNF|ZNF504|ZNF55|ZNF58 zinc finger protein 44 protein-coding 13-PTNLD9-TUMOR_peak_4837 chr1 193080874 193080980 + 8.61357 NA Intergenic AluJo|SINE|Alu -5683 NM_016066 51022 Hs.458283 NM_016066 HPRD:12112 GLRX2 CGI-133|GRX2 glutaredoxin 2 protein-coding 13-PTNLD9-TUMOR_peak_34026 chr3 20081492 20081751 + 8.61357 NA promoter-TSS (NM_003884) promoter-TSS (NM_003884) 97 NM_003884 8850 Hs.533055 NM_003884 HPRD:06780 KAT2B CAF|P/CAF|PCAF K(lysine) acetyltransferase 2B protein-coding 13-PTNLD9-TUMOR_peak_7219 chr10 46769745 46769978 + 8.61357 NA Intergenic Intergenic -6969 NR_003611 399761 Hs.571994 NM_001040053 ENSG00000204164 BMS1P5 BMS1LP1|BMS1LP5|BMS1P1|bA556L1.3 BMS1 pseudogene 5 pseudo 13-PTNLD9-TUMOR_peak_23890 chr19 9434280 9434468 + 8.61357 NA promoter-TSS (NM_001202410) promoter-TSS (NM_001202410) -74 NM_001202407 84527 Hs.172979 NM_032497 HPRD:18352 ZNF559 NBLA00121 zinc finger protein 559 protein-coding 13-PTNLD9-TUMOR_peak_53846 chr9 88358425 88358714 + 8.61126 NA Intergenic Intergenic -1625 NM_015239 23287 Hs.719980 NM_015239 HPRD:08442 AGTPBP1 CCP1|NNA1 ATP/GTP binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_34670 chr3 52900192 52900333 + 8.61117 NA intron (NM_198563, intron 1 of 8) L1M5|LINE|L1 -19694 NR_107031 102465866 NR_107031 MIR8064 hsa-mir-8064 microRNA 8064 ncRNA 13-PTNLD9-TUMOR_peak_9056 chr11 11201017 11201124 + 8.61117 NA Intergenic Intergenic 173834 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2, alpha 3 polypeptide protein-coding 13-PTNLD9-TUMOR_peak_32819 chr22 21333799 21333916 + 8.61117 NA intron (NM_001018060, intron 17 of 19) intron (NM_001018060, intron 17 of 19) -2701 NM_006767 8216 Hs.78788 NM_006767 HPRD:08992 LZTR1 BTBD29|LZTR-1|SWNTS2 leucine-zipper-like transcription regulator 1 protein-coding 13-PTNLD9-TUMOR_peak_31988 chr21 19099833 19099967 + 8.61117 NA Intergenic MLT1H1|LTR|ERVL-MaLR 64926 NR_038870 246312 Hs.473425 NR_038870 ENSG00000240770 C21orf91-OT1 D21S2089E|NCRNA00285 C21orf91 overlapping transcript 1 ncRNA 13-PTNLD9-TUMOR_peak_40526 chr5 31854993 31855297 + 8.61117 NA intron (NM_178140, intron 1 of 23) CpG 56114 NM_178140 23037 Hs.481819 NM_015022 HPRD:10142 PDZD2 AIPC|PAPIN|PDZK3|PIN1 PDZ domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_21818 chr17 64437246 64437517 + 8.61117 NA intron (NM_002737, intron 2 of 16) AluJb|SINE|Alu -24409 NR_110822 101928001 Hs.650730 NR_110822 ENSG00000264630 LOC101928001 - uncharacterized LOC101928001 ncRNA 13-PTNLD9-TUMOR_peak_51458 chr8 102773376 102773658 + 8.61117 NA intron (NM_001040625, intron 4 of 6) intron (NM_001040625, intron 4 of 6) 29922 NM_032041 83988 Hs.492427 NM_032041 HPRD:09466 NCALD - neurocalcin delta protein-coding 13-PTNLD9-TUMOR_peak_47202 chr7 32982788 32982895 + 8.61117 NA promoter-TSS (NR_003500) promoter-TSS (NR_003500) -59 NR_003500 441212 Hs.648086 NM_001039754 ENSG00000205763 RP9P - retinitis pigmentosa 9 pseudogene pseudo 13-PTNLD9-TUMOR_peak_29401 chr2 192623772 192623881 + 8.61117 NA Intergenic Intergenic 80964 NR_045623 64859 Hs.591610 NM_022837 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_32899 chr22 22959151 22959476 + 8.61117 NA Intergenic Intergenic 27699 NR_024591 25812 Hs.367764 NR_024591 POM121L1P POM121L1 POM121 transmembrane nucleoporin-like 1, pseudogene pseudo 13-PTNLD9-TUMOR_peak_13928 chr12 113900285 113900390 + 8.61117 NA TTS (NM_022363) TTS (NM_022363) 9540 NM_022363 64211 Hs.302029 NM_022363 LHX5 - LIM homeobox 5 protein-coding 13-PTNLD9-TUMOR_peak_34354 chr3 42852251 42852465 + 8.61117 NA intron (NM_001296, intron 1 of 2) intron (NM_001296, intron 1 of 2) 1394 NM_001296 1238 Hs.146346 NM_001296 HPRD:09095 ACKR2 CCBP2|CCR10|CCR9|CMKBR9|D6|hD6 atypical chemokine receptor 2 protein-coding 13-PTNLD9-TUMOR_peak_34927 chr3 70330888 70331134 + 8.61117 NA Intergenic MER5A|DNA|hAT-Charlie 282116 NR_110000 101927152 Hs.382046 NR_110000 ENSG00000240405 LINC01212 - long intergenic non-protein coding RNA 1212 ncRNA 13-PTNLD9-TUMOR_peak_2156 chr1 68577627 68577778 + 8.61117 NA intron (NR_040077, intron 6 of 9) intron (NR_040077, intron 6 of 9) -61242 NM_004675 9077 Hs.194695 NM_004675 HPRD:05547 DIRAS3 ARHI|NOEY2 DIRAS family, GTP-binding RAS-like 3 protein-coding 13-PTNLD9-TUMOR_peak_52075 chr8 131260434 131260569 + 8.61117 NA intron (NM_018482, intron 3 of 29) intron (NM_018482, intron 3 of 29) 48278 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_47190 chr7 31764430 31764580 + 8.61117 NA Intergenic Intergenic 37874 NM_001145123 10842 Hs.227011 NM_006658 HPRD:06820 PPP1R17 C7orf16|GSBS protein phosphatase 1, regulatory subunit 17 protein-coding 13-PTNLD9-TUMOR_peak_48744 chr7 105794422 105794518 + 8.61117 NA Intergenic Intergenic -41377 NM_006754 6856 Hs.80919 NM_006754 HPRD:15459 SYPL1 H-SP1|SYPL synaptophysin-like 1 protein-coding 13-PTNLD9-TUMOR_peak_4017 chr1 158116069 158116228 + 8.60925 NA Intergenic MER70-int|LTR|ERVL -5718 NR_033946 646268 Hs.506902 NR_033946 ENSG00000231666 LOC646268 - hCG1654703 ncRNA 13-PTNLD9-TUMOR_peak_24053 chr19 12550933 12551033 + 8.60925 NA intron (NM_005815, intron 1 of 3) LTR26E|LTR|ERV1 943 NM_005815 10224 Hs.636894 NM_005815 HPRD:09460 ZNF443 ZK1 zinc finger protein 443 protein-coding 13-PTNLD9-TUMOR_peak_9933 chr11 58942289 58942443 + 8.60925 NA intron (NM_015177, intron 1 of 8) intron (NM_015177, intron 1 of 8) 2554 NM_015177 23220 Hs.523696 NM_015177 ENSG00000110042 DTX4 RNF155 deltex 4, E3 ubiquitin ligase protein-coding 13-PTNLD9-TUMOR_peak_46673 chr7 1187129 1187577 + 8.60925 NA Intergenic SVA_E|Other|Other -9460 NM_001134395 84310 Hs.653258 NM_032350 HPRD:14413 C7orf50 YCR016W chromosome 7 open reading frame 50 protein-coding 13-PTNLD9-TUMOR_peak_49421 chr7 141730212 141730348 + 8.60925 NA exon (NM_004668, exon 11 of 48) exon (NM_004668, exon 11 of 48) 34601 NM_004668 8972 Hs.122785 NM_004668 HPRD:01104 MGAM MG|MGA maltase-glucoamylase (alpha-glucosidase) protein-coding 13-PTNLD9-TUMOR_peak_14149 chr12 122985016 122985178 + 8.60925 NA intron (NM_017612, intron 1 of 13) CpG 523 NM_017612 55596 Hs.37706 NM_017612 ZCCHC8 - zinc finger, CCHC domain containing 8 protein-coding 13-PTNLD9-TUMOR_peak_40364 chr5 14033204 14033342 + 8.60507 NA Intergenic L2a|LINE|L2 -88684 NM_001369 1767 Hs.212360 NM_001369 HPRD:04514 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein, axonemal, heavy chain 5 protein-coding 13-PTNLD9-TUMOR_peak_25007 chr19 41222188 41222299 + 8.60357 NA promoter-TSS (NM_025194) promoter-TSS (NM_025194) 547 NM_024876 79934 Hs.130712 NM_024876 HPRD:10632 ADCK4 NPHS9 aarF domain containing kinase 4 protein-coding 13-PTNLD9-TUMOR_peak_37866 chr4 8102563 8102772 + 8.60336 NA intron (NM_001130085, intron 2 of 17) intron (NM_001130085, intron 2 of 17) -28924 NM_001286688 84448 Hs.233404 NM_032432 ENSG00000163995 ABLIM2 - actin binding LIM protein family, member 2 protein-coding 13-PTNLD9-TUMOR_peak_37293 chr3 193809085 193809230 + 8.59732 NA Intergenic Intergenic -44774 NM_005524 3280 Hs.250666 NM_005524 HPRD:00770 HES1 HES-1|HHL|HRY|bHLHb39 hes family bHLH transcription factor 1 protein-coding 13-PTNLD9-TUMOR_peak_43070 chr5 173043023 173043166 + 8.59732 NA intron (NM_138369, intron 1 of 3) intron (NM_138369, intron 1 of 3) 572 NM_001159651 91272 Hs.425091 NM_138369 HPRD:13309 BOD1 FAM44B biorientation of chromosomes in cell division 1 protein-coding 13-PTNLD9-TUMOR_peak_22072 chr17 74550276 74550516 + 8.59732 NA Intergenic LTR88b|LTR|Gypsy? -3450 NR_038111 100507246 Hs.288215 NR_038108 ENSG00000163597 SNHG16 ncRAN small nucleolar RNA host gene 16 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_526 chr1 16500044 16500196 + 8.59732 NA Intergenic Intergenic -17538 NM_004431 1969 Hs.171596 NM_004431 HPRD:01494 EPHA2 ARCC2|CTPA|CTPP1|CTRCT6|ECK EPH receptor A2 protein-coding 13-PTNLD9-TUMOR_peak_9083 chr11 12108265 12108391 + 8.59732 NA Intergenic Intergenic -23795 NM_014632 9645 Hs.501928 NM_014632 HPRD:10085 MICAL2 MICAL-2|MICAL2PV1|MICAL2PV2 microtubule associated monooxygenase, calponin and LIM domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_19987 chr16 85548118 85548836 + 8.59732 NA Intergenic Intergenic -96552 NM_001134473 23199 Hs.461647 NM_014615 HPRD:11066 GSE1 KIAA0182 Gse1 coiled-coil protein protein-coding 13-PTNLD9-TUMOR_peak_53373 chr9 46349324 46349484 + 8.59732 NA Intergenic Intergenic 37969 NR_103714 100289124 Hs.567050 NM_001024608 ENSG00000237198 FAM27E2 FAM27E1 family with sequence similarity 27, member E2 ncRNA 13-PTNLD9-TUMOR_peak_9754 chr11 48085160 48085353 + 8.59732 NA intron (NM_002843, intron 1 of 24) intron (NM_002843, intron 1 of 24) 83146 NM_002843 5795 Hs.318547 NM_002843 HPRD:02955 PTPRJ CD148|DEP1|HPTPeta|R-PTP-ETA|SCC1 protein tyrosine phosphatase, receptor type, J protein-coding 13-PTNLD9-TUMOR_peak_47996 chr7 75081841 75081969 + 8.59712 NA intron (NM_001099415, intron 3 of 14) intron (NM_001099415, intron 3 of 14) 33660 NM_001099415 100101267 Hs.712563 NM_001099415 ENSG00000135213 POM121C POM121-2 POM121 transmembrane nucleoporin C protein-coding 13-PTNLD9-TUMOR_peak_14513 chr13 30498079 30498511 + 8.59712 NA intron (NR_047501, intron 1 of 1) intron (NR_047501, intron 1 of 1) 2493 NR_047501 100861573 Hs.585619 NR_047501 ENSG00000224405 LINC00572 - long intergenic non-protein coding RNA 572 ncRNA 13-PTNLD9-TUMOR_peak_14284 chr12 127630689 127630853 + 8.59071 NA Intergenic CpG -85829 NR_104646 101927592 Hs.385663 NR_104646 ENSG00000249345 LOC101927592 - uncharacterized LOC101927592 ncRNA 13-PTNLD9-TUMOR_peak_2729 chr1 109247218 109247358 + 8.59071 NA Intergenic Intergenic -8268 NM_001144937 163479 Hs.258253 NM_173532 HPRD:08195 FNDC7 - fibronectin type III domain containing 7 protein-coding 13-PTNLD9-TUMOR_peak_52092 chr8 131559203 131559466 + 8.59071 NA Intergenic Intergenic -103428 NM_018482 50807 Hs.655552 NM_018482 HPRD:05809 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 13-PTNLD9-TUMOR_peak_41271 chr5 73495422 73495627 + 8.59071 NA Intergenic L2b|LINE|L2 108626 NR_105009 102503429 Hs.519391 NR_105009 LINC01335 - long intergenic non-protein coding RNA 1335 ncRNA 13-PTNLD9-TUMOR_peak_45159 chr6 44472292 44472446 + 8.59071 NA Intergenic Intergenic 68991 NR_039785 100616352 NR_039785 MIR4642 - microRNA 4642 ncRNA 13-PTNLD9-TUMOR_peak_22174 chr17 76534188 76534382 + 8.59071 NA intron (NM_173628, intron 18 of 80) intron (NM_173628, intron 18 of 80) 39191 NM_173628 8632 Hs.375975 NM_003727 HPRD:16830 DNAH17 DNAHL1|DNEL2 dynein, axonemal, heavy chain 17 protein-coding 13-PTNLD9-TUMOR_peak_8499 chr10 123872210 123872562 + 8.59071 NA promoter-TSS (NM_001291879) promoter-TSS (NM_001291879) -168 NM_001291879 10579 Hs.501252 NM_006997 HPRD:05600 TACC2 AZU-1|ECTACC transforming, acidic coiled-coil containing protein 2 protein-coding 13-PTNLD9-TUMOR_peak_55218 chrUn_gl000215 84566 84734 + 8.59071 NA Intergenic Intergenic 16136 NR_107036 102466252 NR_107036 MIR8069-1 MIR8069|hsa-mir-8069 microRNA 8069-1 ncRNA 13-PTNLD9-TUMOR_peak_22419 chr18 1013873 1014012 + 8.59071 NA Intergenic Intergenic 108745 NM_001117 116 Hs.531719 NM_001117 HPRD:02369 ADCYAP1 PACAP adenylate cyclase activating polypeptide 1 (pituitary) protein-coding 13-PTNLD9-TUMOR_peak_27692 chr2 96079902 96080008 + 8.59071 NA Intergenic Intergenic 11507 NM_016044 51011 Hs.531247 NM_016044 HPRD:13287 FAHD2A - fumarylacetoacetate hydrolase domain containing 2A protein-coding 13-PTNLD9-TUMOR_peak_26272 chr2 20709890 20710023 + 8.59071 NA Intergenic MLT1L|LTR|ERVL-MaLR 63121 NM_004040 388 Hs.502876 NM_004040 HPRD:01321 RHOB ARH6|ARHB|MST081|MSTP081|RHOH6 ras homolog family member B protein-coding 13-PTNLD9-TUMOR_peak_46441 chr6 159466048 159466161 + 8.59071 NA promoter-TSS (NM_152133) promoter-TSS (NM_152133) 80 NM_152133 117289 Hs.529984 NM_054114 HPRD:18143 TAGAP ARHGAP47|IDDM21|TAGAP1 T-cell activation RhoGTPase activating protein protein-coding 13-PTNLD9-TUMOR_peak_38644 chr4 77771392 77771569 + 8.59071 NA Intergenic MER5B|DNA|hAT-Charlie 47522 NM_001029870 345079 Hs.257292 NM_001029870 HPRD:18789 SOWAHB ANKRD56 sosondowah ankyrin repeat domain family member B protein-coding 13-PTNLD9-TUMOR_peak_42254 chr5 138397092 138397283 + 8.59071 NA intron (NM_022464, intron 3 of 9) MIRc|SINE|MIR 136878 NM_022464 64374 Hs.483521 NM_022464 HPRD:12150 SIL1 BAP|MSS|ULG5 SIL1 nucleotide exchange factor protein-coding 13-PTNLD9-TUMOR_peak_8270 chr10 105632124 105632249 + 8.59071 NA Intergenic Intergenic -17022 NM_014631 9644 Hs.678727 NM_014631 HPRD:10228 SH3PXD2A FISH|SH3MD1|TKS5 SH3 and PX domains 2A protein-coding 13-PTNLD9-TUMOR_peak_39826 chr4 169239501 169239758 + 8.59071 NA intron (NM_017631, intron 1 of 37) CpG 329 NM_017631 55601 Hs.591710 NM_017631 HPRD:07877 DDX60 - DEAD (Asp-Glu-Ala-Asp) box polypeptide 60 protein-coding 13-PTNLD9-TUMOR_peak_36239 chr3 142547670 142547777 + 8.59071 NA intron (NM_013363, intron 6 of 8) intron (NM_013363, intron 6 of 8) 60322 NM_013363 26577 Hs.8944 NM_013363 HPRD:06139 PCOLCE2 PCPE2 procollagen C-endopeptidase enhancer 2 protein-coding 13-PTNLD9-TUMOR_peak_46766 chr7 4793528 4793725 + 8.59071 NA intron (NM_001037165, intron 2 of 8) intron (NM_001037165, intron 2 of 8) -21636 NM_014855 9907 Hs.558440 NM_014855 AP5Z1 KIAA0415|SPG48|zeta adaptor-related protein complex 5, zeta 1 subunit protein-coding 13-PTNLD9-TUMOR_peak_41807 chr5 114970539 114970640 + 8.59071 NA Intergenic Intergenic -8713 NM_001164469 100302736 NM_001164468 ENSG00000243414 TMED7-TICAM2 - TMED7-TICAM2 readthrough protein-coding 13-PTNLD9-TUMOR_peak_33456 chr22 46646003 46646316 + 8.59071 NA promoter-TSS (NM_207327) promoter-TSS (NM_207327) 34 NM_207327 150383 Hs.103110 NM_207327 CDPF1 C22orf40 cysteine-rich, DPF motif domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_2994 chr1 116803871 116804172 + 8.59071 NA Intergenic Intergenic -111774 NM_000701 476 Hs.371889 NM_000701 HPRD:01662 ATP1A1 - ATPase, Na+/K+ transporting, alpha 1 polypeptide protein-coding 13-PTNLD9-TUMOR_peak_22284 chr17 79698460 79698598 + 8.58259 NA Intergenic L1MB7|LINE|L1 19263 NM_001270953 1468 Hs.548187 NM_012140 HPRD:08424 SLC25A10 DIC solute carrier family 25 (mitochondrial carrier; dicarboxylate transporter), member 10 protein-coding 13-PTNLD9-TUMOR_peak_21320 chr17 45899079 45899242 + 8.58135 NA promoter-TSS (NM_145798) promoter-TSS (NM_145798) -13 NM_145798 114881 Hs.463320 NM_017731 HPRD:09477 OSBPL7 ORP7 oxysterol binding protein-like 7 protein-coding 13-PTNLD9-TUMOR_peak_23514 chr18 76927742 76927852 + 8.58135 NA intron (NM_198531, intron 7 of 29) MER52A|LTR|ERV1 98400 NM_198531 374868 Hs.465475 NM_198531 HPRD:16528 ATP9B ATPASEP|ATPIIB|NEO1L|hMMR1 ATPase, class II, type 9B protein-coding 13-PTNLD9-TUMOR_peak_20032 chr16 87615886 87616015 + 8.58135 NA Intergenic Intergenic -19491 NR_073379 57338 Hs.592068 NM_020655 HPRD:05589 JPH3 CAGL237|HDL2|JP-3|JP3|TNRC22 junctophilin 3 protein-coding 13-PTNLD9-TUMOR_peak_41222 chr5 71674554 71674701 + 8.58135 NA Intergenic Intergenic 58433 NM_001284404 79810 Hs.126906 NM_024754 HPRD:15193 PTCD2 - pentatricopeptide repeat domain 2 protein-coding 13-PTNLD9-TUMOR_peak_16445 chr14 91765063 91765294 + 8.58135 NA intron (NM_001080414, intron 21 of 29) intron (NM_001080414, intron 21 of 29) -44954 NM_003485 8111 Hs.8882 NM_003485 HPRD:03241 GPR68 GPR12A|OGR1 G protein-coupled receptor 68 protein-coding 13-PTNLD9-TUMOR_peak_21284 chr17 44842164 44842373 + 8.58135 NA intron (NM_030753, intron 4 of 4) intron (NM_030753, intron 4 of 4) 53858 NM_030753 7473 Hs.445884 NM_030753 HPRD:01318 WNT3 INT4 wingless-type MMTV integration site family, member 3 protein-coding 13-PTNLD9-TUMOR_peak_51860 chr8 125275085 125275266 + 8.58135 NA Intergenic Intergenic -15536 NR_125420 101927588 Hs.617072 NR_125420 ENSG00000214803 LOC101927588 - uncharacterized LOC101927588 ncRNA 13-PTNLD9-TUMOR_peak_33244 chr22 38245313 38245460 + 8.58135 NA promoter-TSS (NM_001242923) promoter-TSS (NM_001242923) 7 NM_001242923 51386 Hs.446852 NM_016091 HPRD:10932 EIF3L EIF3EIP|EIF3S11|EIF3S6IP|HSPC021|HSPC025|MSTP005 eukaryotic translation initiation factor 3, subunit L protein-coding 13-PTNLD9-TUMOR_peak_47198 chr7 32720381 32720731 + 8.58135 NA intron (NR_036680, intron 2 of 16) MER41B|LTR|ERV1 38224 NR_036680 100129460 Hs.633705 NR_036680 DPY19L1P1 - DPY19L1 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_6121 chr1 244555218 244555399 + 8.58135 NA Intergenic ERVL-int|LTR|ERVL 39371 NM_001276348 200159 Hs.442703 NM_001012970 HPRD:13168 C1orf100 - chromosome 1 open reading frame 100 protein-coding 13-PTNLD9-TUMOR_peak_25608 chr19 54057655 54057936 + 8.58135 NA promoter-TSS (NM_001253801) promoter-TSS (NM_001253801) -104 NM_001253801 55422 Hs.185674 NM_018555 HPRD:05827 ZNF331 RITA|ZNF361|ZNF463 zinc finger protein 331 protein-coding 13-PTNLD9-TUMOR_peak_2116 chr1 67519309 67519551 + 8.58135 NA intron (NM_015139, intron 1 of 11) CpG 650 NM_015139 23169 Hs.213642 NM_015139 HPRD:15372 SLC35D1 UGTREL7 solute carrier family 35 (UDP-GlcA/UDP-GalNAc transporter), member D1 protein-coding 13-PTNLD9-TUMOR_peak_12103 chr12 9800596 9801198 + 8.58135 NA non-coding (NR_046447, exon 1 of 4) non-coding (NR_046447, exon 1 of 4) 254 NR_046446 374443 Hs.569124 NR_002814 ENSG00000256594 LOC374443 - C-type lectin domain family 2, member D pseudogene pseudo 13-PTNLD9-TUMOR_peak_22578 chr18 10259917 10260082 + 8.58135 NA Intergenic L1MC4a|LINE|L1 154368 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 13-PTNLD9-TUMOR_peak_22215 chr17 78010318 78010497 + 8.58026 NA promoter-TSS (NM_019020) promoter-TSS (NM_019020) -24 NM_001243342 55036 Hs.202542 NM_017950 ENSG00000141519 CCDC40 CILD15|FAP172 coiled-coil domain containing 40 protein-coding 13-PTNLD9-TUMOR_peak_42291 chr5 139140041 139140317 + 8.58026 NA Intergenic Intergenic -14371 NR_105053 101929696 Hs.147408 NR_105052 ENSG00000249131 LOC101929696 - uncharacterized LOC101929696 ncRNA 13-PTNLD9-TUMOR_peak_4179 chr1 162205045 162205316 + 8.58026 NA intron (NM_001164757, intron 2 of 9) intron (NM_001164757, intron 2 of 9) 78283 NR_039798 100616386 NR_039798 MIR4654 - microRNA 4654 ncRNA 13-PTNLD9-TUMOR_peak_32341 chr21 40379568 40379705 + 8.58026 NA Intergenic MER5A|DNA|hAT-Charlie -29936 NR_109962 101928435 Hs.385528 NR_109962 ENSG00000232837 LOC101928435 - uncharacterized LOC101928435 ncRNA 13-PTNLD9-TUMOR_peak_50291 chr8 22431894 22432156 + 8.58026 NA intron (NM_001018003, intron 9 of 9) intron (NM_001018003, intron 9 of 9) -4229 NM_021630 64236 Hs.632034 NM_021630 HPRD:17831 PDLIM2 MYSTIQUE|SLIM PDZ and LIM domain 2 (mystique) protein-coding 13-PTNLD9-TUMOR_peak_21147 chr17 42083912 42084187 + 8.58026 NA exon (NM_153006, exon 4 of 7) exon (NM_153006, exon 4 of 7) 2017 NM_153006 162417 Hs.8876 NM_153006 HPRD:10510 NAGS AGAS|ARGA N-acetylglutamate synthase protein-coding 13-PTNLD9-TUMOR_peak_30595 chr20 22743896 22744537 + 8.58026 NA Intergenic Intergenic -156061 NR_109883 101929685 Hs.563018 NR_109883 LINC01384 - long intergenic non-protein coding RNA 1384 ncRNA 13-PTNLD9-TUMOR_peak_17807 chr15 82932759 82932976 + 8.57926 NA intron (NR_111962, intron 7 of 10) intron (NR_111962, intron 7 of 10) -11879 NR_026811 80154 Hs.454640 NM_025084 GOLGA2P10 - golgin A2 pseudogene 10 pseudo 13-PTNLD9-TUMOR_peak_17213 chr15 45372055 45372222 + 8.56960 NA Intergenic Intergenic 34221 NM_014080 50506 Hs.71377 NM_014080 HPRD:05997 DUOX2 LNOX2|NOXEF2|P138-TOX|TDH6|THOX2 dual oxidase 2 protein-coding 13-PTNLD9-TUMOR_peak_2037 chr1 63194787 63194926 + 8.56960 NA Intergenic Intergenic -40817 NM_033407 85440 Hs.744927 NM_033407 HPRD:16833 DOCK7 EIEE23|ZIR2 dedicator of cytokinesis 7 protein-coding 13-PTNLD9-TUMOR_peak_34393 chr3 44927188 44927313 + 8.56960 NA intron (NM_003241, intron 2 of 13) intron (NM_003241, intron 2 of 13) 11152 NM_003241 7047 Hs.438265 NM_003241 HPRD:08997 TGM4 TGP|hTGP transglutaminase 4 protein-coding 13-PTNLD9-TUMOR_peak_7378 chr10 52420028 52420169 + 8.56960 NA Intergenic Intergenic -36361 NM_147156 259230 Hs.654698 NM_147156 HPRD:18203 SGMS1 MOB|MOB1|SMS1|TMEM23|hmob33 sphingomyelin synthase 1 protein-coding 13-PTNLD9-TUMOR_peak_15468 chr14 32414315 32414445 + 8.56960 NA Intergenic Intergenic 131525 NR_027263 84837 Hs.496755 NM_032751 ENSG00000258655 ARHGAP5-AS1 C14orf128 ARHGAP5 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_52980 chr9 30932316 30932474 + 8.56960 NA Intergenic AluJb|SINE|Alu -523943 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 13-PTNLD9-TUMOR_peak_44821 chr6 36628688 36628898 + 8.56960 NA Intergenic CpG 14110 NR_109836 101154753 Hs.741557 NR_109836 PANDAR PANDA promoter of CDKN1A antisense DNA damage activated RNA ncRNA 13-PTNLD9-TUMOR_peak_11445 chr11 121526730 121526835 + 8.56960 NA Intergenic Intergenic 203870 NM_003105 6653 Hs.368592 NM_003105 HPRD:03595 SORL1 C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250 sortilin-related receptor, L(DLR class) A repeats containing protein-coding 13-PTNLD9-TUMOR_peak_8066 chr10 97277405 97277637 + 8.56960 NA intron (NM_001290294, intron 1 of 31) intron (NM_001290294, intron 1 of 31) 43656 NM_015385 10580 Hs.38621 NM_006434 HPRD:05587 SORBS1 CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1 sorbin and SH3 domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_55902 chrX 54665842 54665973 + 8.56960 NA Intergenic CpG 109263 NM_019067 54552 Hs.654677 NM_019067 GNL3L - guanine nucleotide binding protein-like 3 (nucleolar)-like protein-coding 13-PTNLD9-TUMOR_peak_28148 chr2 114110702 114110901 + 8.56960 NA Intergenic Intergenic -74303 NM_003466 7849 Hs.469728 NM_003466 HPRD:01335 PAX8 - paired box 8 protein-coding 13-PTNLD9-TUMOR_peak_24103 chr19 13088731 13088911 + 8.56960 NA Intergenic Intergenic 8389 NM_152654 199699 Hs.331981 NM_152654 HPRD:08788 DAND5 CER2|CERL2|CKTSF1B3|COCO|CRL2|DANTE|GREM3|SP1 DAN domain family member 5, BMP antagonist protein-coding 13-PTNLD9-TUMOR_peak_30553 chr20 19717766 19717989 + 8.56960 NA Intergenic LTR37B|LTR|ERV1 -149288 NM_001242581 54453 Hs.472270 NM_018993 HPRD:15249 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 13-PTNLD9-TUMOR_peak_28701 chr2 150462858 150463184 + 8.56960 NA intron (NR_110240, intron 1 of 2) L1MA7|LINE|L1 -18691 NM_015702 27249 Hs.5324 NM_015702 HPRD:10781 MMADHC C2orf25|CL25022|cblD methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria protein-coding 13-PTNLD9-TUMOR_peak_33831 chr3 13257558 13257810 + 8.56953 NA Intergenic Intergenic -143067 NM_001134382 9922 Hs.475506 NM_014869 HPRD:11052 IQSEC1 ARF-GEP100|ARFGEP100|BRAG2|GEP100 IQ motif and Sec7 domain 1 protein-coding 13-PTNLD9-TUMOR_peak_32741 chr22 19798458 19798583 + 8.56953 NA intron (NM_053004, intron 5 of 7) intron (NM_053004, intron 5 of 7) 43851 NM_024627 79680 Hs.105642 NM_024627 HPRD:13382 C22orf29 BOP chromosome 22 open reading frame 29 protein-coding 13-PTNLD9-TUMOR_peak_5908 chr1 234679956 234680227 + 8.56953 NA Intergenic Intergenic -12566 NR_038426 100506795 Hs.448989 NR_038426 ENSG00000231768 LINC01354 - long intergenic non-protein coding RNA 1354 ncRNA 13-PTNLD9-TUMOR_peak_49431 chr7 142115752 142115861 + 8.56953 NA Intergenic Intergenic -143738 NR_036483 207147 Hs.604069 NR_036483 TRY2P - trypsinogen-like pseudogene pseudo 13-PTNLD9-TUMOR_peak_3853 chr1 155176829 155177150 + 8.56889 NA intron (NM_001252608, intron 1 of 20) intron (NM_001252608, intron 1 of 20) 783 NM_007112 7059 Hs.169875 NM_007112 HPRD:01767 THBS3 TSP3 thrombospondin 3 protein-coding 13-PTNLD9-TUMOR_peak_19984 chr16 85491102 85491229 + 8.56680 NA Intergenic Intergenic -151234 NR_049816 100847022 NR_049816 miRBase:MI0017982 MIR5093 - microRNA 5093 ncRNA 13-PTNLD9-TUMOR_peak_3460 chr1 148864569 148864852 + 8.55997 NA intron (NR_104217, intron 2 of 17) CpG -37135 NR_111001 1818 Hs.568236 NR_111001 DRD5P2 - dopamine receptor D5 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_36754 chr3 172376730 172376916 + 8.55679 NA intron (NM_020792, intron 1 of 4) MIR|SINE|MIR 52185 NM_001146278 57552 Hs.444099 NM_020792 HPRD:07489 NCEH1 AADACL1|NCEH neutral cholesterol ester hydrolase 1 protein-coding 13-PTNLD9-TUMOR_peak_53355 chr9 45356591 45356748 + 8.55610 NA Intergenic CpG -351379 NR_121606 102723709 Hs.743015 NR_121606 LOC102723709 - uncharacterized LOC102723709 ncRNA 13-PTNLD9-TUMOR_peak_42605 chr5 149319188 149319404 + 8.55467 NA intron (NM_000440, intron 1 of 21) MIRb|SINE|MIR 5060 NM_000440 5145 Hs.567314 NM_000440 HPRD:01570 PDE6A CGPR-A|PDEA|RP43 phosphodiesterase 6A, cGMP-specific, rod, alpha protein-coding 13-PTNLD9-TUMOR_peak_49447 chr7 142468039 142468256 + 8.54681 NA Intergenic Intergenic -10610 NR_001296 154754 Hs.449281 NR_001296 ENSG00000250606 PRSS3P2 T6|TRY6 protease, serine, 3 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_54616 chr9 122040552 122040650 + 8.54635 NA intron (NM_014618, intron 2 of 7) intron (NM_014618, intron 2 of 7) 91138 NM_014618 1620 Hs.532316 NM_014618 HPRD:04181 BRINP1 DBC1|DBCCR1|FAM5A bone morphogenetic protein/retinoic acid inducible neural-specific 1 protein-coding 13-PTNLD9-TUMOR_peak_18232 chr16 2178422 2178630 + 8.54635 NA intron (NM_001009944, intron 1 of 45) intron (NM_001009944, intron 1 of 45) -4594 NR_039741 100616258 NR_039741 miRBase:MI0016882 MIR4516 - microRNA 4516 ncRNA 13-PTNLD9-TUMOR_peak_12659 chr12 47358354 47358570 + 8.54635 NA Intergenic Intergenic -114924 NM_001281429 91523 Hs.560100 NM_138371 HPRD:17513 PCED1B FAM113B PC-esterase domain containing 1B protein-coding 13-PTNLD9-TUMOR_peak_4870 chr1 197744133 197744348 + 8.54635 NA intron (NM_001300858, intron 1 of 15) CpG 383 NM_001300858 163486 Hs.125056 NM_019049 HPRD:13303 DENND1B C1ORF18|C1orf218|FAM31B DENN/MADD domain containing 1B protein-coding 13-PTNLD9-TUMOR_peak_9260 chr11 19139099 19139368 + 8.54635 NA intron (NM_001001483, intron 1 of 15) intron (NM_001001483, intron 1 of 15) 541 NM_001001483 54503 Hs.188569 NM_019028 HPRD:15710 ZDHHC13 HIP14L|HIP3RP zinc finger, DHHC-type containing 13 protein-coding 13-PTNLD9-TUMOR_peak_26259 chr2 20266115 20266298 + 8.54431 NA Intergenic Intergenic -14417 NM_014713 9741 Hs.467807 NM_014713 HPRD:13959 LAPTM4A HUMORF13|LAPTM4|MBNT|Mtrp lysosomal protein transmembrane 4 alpha protein-coding 13-PTNLD9-TUMOR_peak_47800 chr7 69336600 69336753 + 8.54431 NA intron (NM_001127231, intron 1 of 17) MER44B|DNA|TcMar-Tigger 272771 NM_001127231 26053 Hs.21631 NM_015570 HPRD:06276 AUTS2 FBRSL2|MRD26 autism susceptibility candidate 2 protein-coding 13-PTNLD9-TUMOR_peak_2907 chr1 113585385 113585511 + 8.54431 NA intron (NR_103777, intron 2 of 2) intron (NR_103777, intron 2 of 2) 30276 NR_103777 100996251 Hs.382067 NR_103777 ENSG00000238198 LOC100996251 - uncharacterized LOC100996251 ncRNA 13-PTNLD9-TUMOR_peak_47110 chr7 26631729 26631945 + 8.54431 NA Intergenic L2a|LINE|L2 -45653 NM_001145531 285941 Hs.413394 NM_001145531 ENSG00000222004 C7orf71 - chromosome 7 open reading frame 71 protein-coding 13-PTNLD9-TUMOR_peak_51835 chr8 124560585 124560798 + 8.54431 NA Intergenic Intergenic -7198 NM_001242463 114907 Hs.403933 NM_058229 HPRD:05966 FBXO32 Fbx32|MAFbx F-box protein 32 protein-coding 13-PTNLD9-TUMOR_peak_11505 chr11 124351728 124351960 + 8.54431 NA Intergenic Intergenic -40863 NM_012378 26493 Hs.351822 NM_012378 ENSG00000197125 OR8B8 TPCR85 olfactory receptor, family 8, subfamily B, member 8 protein-coding 13-PTNLD9-TUMOR_peak_50146 chr8 16629366 16629628 + 8.54431 NA Intergenic LTR43|LTR|ERV1 230177 NM_019851 26281 Hs.199905 NM_019851 FGF20 FGF-20|RHDA2 fibroblast growth factor 20 protein-coding 13-PTNLD9-TUMOR_peak_28275 chr2 121334742 121335001 + 8.54431 NA Intergenic Intergenic -110946 NR_027181 84931 Hs.334519 NM_032845 HPRD:08604 LINC01101 - long intergenic non-protein coding RNA 1101 ncRNA 13-PTNLD9-TUMOR_peak_40284 chr5 9947346 9947907 + 8.54431 NA Intergenic Intergenic -43690 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LOC285692 - uncharacterized LOC285692 ncRNA 13-PTNLD9-TUMOR_peak_28091 chr2 113058749 113058984 + 8.54431 NA intron (NM_198581, intron 2 of 11) intron (NM_198581, intron 2 of 11) 25688 NM_198581 376940 Hs.190477 NM_198581 HPRD:15698 ZC3H6 ZC3HDC6 zinc finger CCCH-type containing 6 protein-coding 13-PTNLD9-TUMOR_peak_23535 chr18 77359486 77359698 + 8.54431 NA Intergenic Intergenic -80209 NM_004715 9150 Hs.465490 NM_004715 HPRD:05377 CTDP1 CCFDN|FCP1 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1 protein-coding 13-PTNLD9-TUMOR_peak_35964 chr3 133157003 133157118 + 8.54431 NA intron (NM_003571, intron 1 of 6) HAL1|LINE|L1 38221 NM_003571 8419 Hs.659862 NM_003571 HPRD:04444 BFSP2 CP47|CP49|CTRCT12|LIFL-L|PHAKOSIN beaded filament structural protein 2, phakinin protein-coding 13-PTNLD9-TUMOR_peak_13968 chr12 117699166 117699280 + 8.54431 NA intron (NM_001204214, intron 12 of 27) L2a|LINE|L2 43634 NM_001204213 4842 Hs.654410 NM_000620 HPRD:01226 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 (neuronal) protein-coding 13-PTNLD9-TUMOR_peak_18169 chr16 799144 799248 + 8.54431 NA Intergenic Ricksha_0|DNA|MuDR -8199 NM_022493 64428 Hs.513247 NM_022493 HPRD:14810 NARFL HPRN|IOP1|LET1L|PRN nuclear prelamin A recognition factor-like protein-coding 13-PTNLD9-TUMOR_peak_28352 chr2 127270762 127270885 + 8.54431 NA Intergenic Intergenic -142688 NM_001256584 2995 Hs.59138 NM_002101 HPRD:00193 GYPC CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 13-PTNLD9-TUMOR_peak_42161 chr5 134722786 134722916 + 8.54431 NA intron (NM_001040158, intron 2 of 8) intron (NM_001040158, intron 2 of 8) 12077 NM_138610 9555 Hs.420272 NM_004893 HPRD:13624 H2AFY H2A.y|H2A/y|H2AF12M|H2AFJ|MACROH2A1.1|mH2A1|macroH2A1.2 H2A histone family, member Y protein-coding 13-PTNLD9-TUMOR_peak_6658 chr10 22716982 22717090 + 8.54431 NA Intergenic Intergenic 9822 NR_036533 100499489 Hs.7444 NR_036533 LOC100499489 - uncharacterized LOC100499489 ncRNA 13-PTNLD9-TUMOR_peak_4781 chr1 186051414 186051606 + 8.54431 NA intron (NM_031935, intron 56 of 106) MLT1H|LTR|ERVL-MaLR -213895 NM_001127709 10216 Hs.647723 NM_005807 HPRD:05047 PRG4 CACP|HAPO|JCAP|MSF|SZP|bG174L6.2 proteoglycan 4 protein-coding 13-PTNLD9-TUMOR_peak_27959 chr2 109294898 109295006 + 8.54431 NA intron (NM_001193482, intron 8 of 9) intron (NM_001193482, intron 8 of 9) 23684 NM_001193485 3987 Hs.597715 NM_004987 HPRD:03978 LIMS1 PINCH|PINCH-1|PINCH1 LIM and senescent cell antigen-like domains 1 protein-coding 13-PTNLD9-TUMOR_peak_11003 chr11 96144531 96144783 + 8.54431 NA Intergenic L1PA2|LINE|L1 21499 NM_003772 8690 Hs.105940 NM_003772 HPRD:04443 JRKL HHMJG JRK-like protein-coding 13-PTNLD9-TUMOR_peak_21982 chr17 73266397 73266757 + 8.54151 NA promoter-TSS (NM_001242500) promoter-TSS (NM_001242500) -251 NM_001242500 57409 Hs.325631 NM_020679 HPRD:10629 MIF4GD AD023|MIFD|SLIP1 MIF4G domain containing protein-coding 13-PTNLD9-TUMOR_peak_37571 chr4 1284603 1284765 + 8.54151 NA intron (NR_123716, intron 1 of 6) MIR|SINE|MIR 1045 NR_123716 10296 Hs.139896 NM_005882 HPRD:08427 MAEA EMLP|EMP|GID9|HLC-10|PIG5 macrophage erythroblast attacher protein-coding 13-PTNLD9-TUMOR_peak_19975 chr16 85384656 85384845 + 8.54151 NA Intergenic Intergenic -44819 NR_049816 100847022 NR_049816 miRBase:MI0017982 MIR5093 - microRNA 5093 ncRNA 13-PTNLD9-TUMOR_peak_28415 chr2 129949115 129949314 + 8.54151 NA Intergenic Intergenic 82250 NR_122041 151121 Hs.531687 NM_001033657 ENSG00000204460 LOC151121 - uncharacterized LOC151121 ncRNA 13-PTNLD9-TUMOR_peak_52505 chr8 145320082 145320306 + 8.54151 NA Intergenic Intergenic -1267 NM_001080514 642658 Hs.553250 NM_001008271 ENSG00000187786 SCX SCXA|SCXB|bHLHa48 scleraxis basic helix-loop-helix transcription factor protein-coding 13-PTNLD9-TUMOR_peak_18833 chr16 25060009 25060178 + 8.54151 NA Intergenic Intergenic 17031 NR_038379 554206 Hs.552959 NR_038379 LOC554206 - leucine carboxyl methyltransferase 1 pseudogene pseudo 13-PTNLD9-TUMOR_peak_2323 chr1 85667329 85667478 + 8.53622 NA promoter-TSS (NM_032184) promoter-TSS (NM_032184) -675 NM_032184 84144 Hs.533853 NM_032184 ENSG00000097096 SYDE2 - synapse defective 1, Rho GTPase, homolog 2 (C. elegans) protein-coding 13-PTNLD9-TUMOR_peak_27498 chr2 87542403 87542595 + 8.53622 NA Intergenic Intergenic -212475 NR_024204 112597 Hs.652166 NM_052871 HPRD:14654 LINC00152 C2orf59|NCRNA00152 long intergenic non-protein coding RNA 152 ncRNA 13-PTNLD9-TUMOR_peak_10980 chr11 95770857 95771108 + 8.53622 NA intron (NM_032427, intron 2 of 4) intron (NM_032427, intron 2 of 4) -113611 NM_016156 8898 Hs.181326 NM_016156 HPRD:04650 MTMR2 CMT4B|CMT4B1 myotubularin related protein 2 protein-coding 13-PTNLD9-TUMOR_peak_24109 chr19 13148075 13148254 + 8.53097 NA intron (NM_001271043, intron 2 of 10) intron (NM_001271043, intron 2 of 10) 12769 NM_001271043 4784 Hs.257970 NM_002501 HPRD:01234 NFIX MRSHSS|NF1A|SOTOS2 nuclear factor I/X (CCAAT-binding transcription factor) protein-coding 13-PTNLD9-TUMOR_peak_37134 chr3 187888400 187888607 + 8.52881 NA intron (NM_001167672, intron 1 of 9) intron (NM_001167672, intron 1 of 9) -7828 NR_024413 401105 Hs.679026 NM_207488 HPRD:16962 FLJ42393 AVPC1948 uncharacterized LOC401105 ncRNA 13-PTNLD9-TUMOR_peak_25563 chr19 53173339 53173553 + 8.52881 NA intron (NM_001277949, intron 1 of 4) LTR10F|LTR|ERV1 20388 NM_001277945 55769 Hs.467210 NM_018300 HPRD:01935 ZNF83 HPF1|ZNF816B zinc finger protein 83 protein-coding 13-PTNLD9-TUMOR_peak_38038 chr4 16124034 16124179 + 8.52881 NA Intergenic LTR77|LTR|ERV1 -38483 NM_001145848 8842 Hs.614734 NM_006017 HPRD:05079 PROM1 AC133|CD133|CORD12|MCDR2|PROML1|RP41|STGD4 prominin 1 protein-coding 13-PTNLD9-TUMOR_peak_39182 chr4 120014702 120014884 + 8.52881 NA Intergenic Intergenic -42146 NM_016599 51778 Hs.732122 NM_016599 HPRD:05724 MYOZ2 C4orf5|CMH16|CS-1 myozenin 2 protein-coding 13-PTNLD9-TUMOR_peak_13807 chr12 110389671 110389785 + 8.52881 NA intron (NM_057170, intron 13 of 17) L2a|LINE|L2 44466 NM_057170 9815 Hs.434996 NM_014776 HPRD:09779 GIT2 CAT-2|CAT2 G protein-coupled receptor kinase interacting ArfGAP 2 protein-coding 13-PTNLD9-TUMOR_peak_42866 chr5 159935972 159936087 + 8.52881 NA Intergenic Intergenic 23670 NR_029701 406938 NR_029701 miRBase:MI0000477 MIR146A MIRN146|MIRN146A|miR-146a|miRNA146A microRNA 146a ncRNA 13-PTNLD9-TUMOR_peak_40270 chr5 9348541 9348639 + 8.52881 NA intron (NM_003966, intron 3 of 22) intron (NM_003966, intron 3 of 22) -162855 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 CTD-2201E9.1 - uncharacterized LOC101929338 ncRNA 13-PTNLD9-TUMOR_peak_7321 chr10 50000819 50000928 + 8.52881 NA intron (NM_020945, intron 23 of 61) intron (NM_020945, intron 23 of 61) 107355 NM_020945 57705 Hs.287379 NM_020945 ENSG00000128815 WDFY4 C10orf64 WDFY family member 4 protein-coding 13-PTNLD9-TUMOR_peak_38925 chr4 97959047 97959163 + 8.52881 NA Intergenic L1PA7|LINE|L1 -328972 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_40822 chr5 49736779 49737300 + 8.52881 NA 5' UTR (NM_198449, exon 1 of 9) 5' UTR (NM_198449, exon 1 of 9) 195 NM_198449 133418 Hs.561411 NM_198449 HPRD:13271 EMB GP70 embigin protein-coding 13-PTNLD9-TUMOR_peak_38563 chr4 73071623 73071769 + 8.52881 NA Intergenic Intergenic 166847 NM_001144756 10886 Hs.99231 NM_004885 HPRD:16244 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 13-PTNLD9-TUMOR_peak_5849 chr1 232941642 232941802 + 8.52881 NA exon (NM_019090, exon 1 of 1) exon (NM_019090, exon 1 of 1) 1084 NM_019090 54627 Hs.160373 NM_019090 ENSG00000212916 MAP10 KIAA1383|MTR120 microtubule-associated protein 10 protein-coding 13-PTNLD9-TUMOR_peak_7660 chr10 72691005 72691104 + 8.52881 NA Intergenic Intergenic -42511 NM_000281 5092 Hs.3192 NM_000281 HPRD:00523 PCBD1 DCOH|PCBD|PCD|PHS pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha protein-coding 13-PTNLD9-TUMOR_peak_37245 chr3 191925166 191925334 + 8.52881 NA intron (NM_021032, intron 3 of 4) L2c|LINE|L2 -31169 NR_046596 100873986 Hs.581652 NR_046596 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_643 chr1 22556013 22556347 + 8.52881 NA Intergenic Intergenic -86661 NM_030761 54361 Hs.25766 NM_030761 HPRD:04601 WNT4 SERKAL|WNT-4 wingless-type MMTV integration site family, member 4 protein-coding 13-PTNLD9-TUMOR_peak_53389 chr9 65810964 65811100 + 8.52881 NA Intergenic Intergenic -301422 NM_001113541 727905 Hs.645497 NM_001113541 ENSG00000233788 SPATA31A5 FAM75A5 SPATA31 subfamily A, member 5 protein-coding 13-PTNLD9-TUMOR_peak_30965 chr20 36162951 36163090 + 8.52881 NA Intergenic Intergenic -6687 NM_006698 10904 Hs.472651 NM_006698 HPRD:16552 BLCAP BC10 bladder cancer associated protein protein-coding 13-PTNLD9-TUMOR_peak_16951 chr15 31796818 31797111 + 8.52881 NA intron (NM_130901, intron 6 of 10) intron (NM_130901, intron 6 of 10) 150578 NM_130901 161725 Hs.355236 NM_130901 HPRD:12666 OTUD7A C15orf16|C16ORF15|CEZANNE2|OTUD7 OTU deubiquitinase 7A protein-coding 13-PTNLD9-TUMOR_peak_24272 chr19 16412909 16413058 + 8.52881 NA Intergenic Intergenic -22668 NM_016270 10365 Hs.744182 NM_016270 HPRD:03602 KLF2 LKLF Kruppel-like factor 2 protein-coding 13-PTNLD9-TUMOR_peak_35301 chr3 109884583 109884747 + 8.52881 NA Intergenic MER4A1|LTR|ERV1 755828 NR_109841 401082 Hs.477089 NM_001145553 LINC01205 - long intergenic non-protein coding RNA 1205 ncRNA 13-PTNLD9-TUMOR_peak_39082 chr4 111406048 111406209 + 8.52881 NA intron (NM_001977, intron 1 of 19) intron (NM_001977, intron 1 of 19) 8899 NM_001977 2028 Hs.435765 NM_001977 ENPEP APA|CD249|gp160 glutamyl aminopeptidase (aminopeptidase A) protein-coding 13-PTNLD9-TUMOR_peak_20581 chr17 18164628 18164801 + 8.52640 NA intron (NM_148886, intron 1 of 3) intron (NM_148886, intron 1 of 3) 290 NM_148886 125170 Hs.655555 NM_139162 HPRD:18074 MIEF2 MID49|SMCR7 mitochondrial elongation factor 2 protein-coding 13-PTNLD9-TUMOR_peak_10140 chr11 64013325 64013429 + 8.52640 NA intron (NM_138689, intron 1 of 3) intron (NM_138689, intron 1 of 3) 1036 NM_138689 26472 Hs.523760 NM_138689 HPRD:18513 PPP1R14B PHI-1|PLCB3N|PNG|SOM172 protein phosphatase 1, regulatory (inhibitor) subunit 14B protein-coding 13-PTNLD9-TUMOR_peak_36002 chr3 134032310 134032433 + 8.51431 NA Intergenic CpG 54333 NR_106885 102466744 NR_106885 MIR6827 hsa-mir-6827 microRNA 6827 ncRNA 13-PTNLD9-TUMOR_peak_24408 chr19 18539705 18539965 + 8.51407 NA intron (NM_001009998, intron 4 of 16) CpG 8284 NM_001253389 51477 Hs.405873 NM_016368 HPRD:17163 ISYNA1 INO1|INOS|IPS|IPS 1|IPS-1 inositol-3-phosphate synthase 1 protein-coding 13-PTNLD9-TUMOR_peak_38826 chr4 87932907 87933014 + 8.51330 NA intron (NM_005935, intron 1 of 19) intron (NM_005935, intron 1 of 19) 4807 NM_005935 4299 Hs.480190 NM_005935 HPRD:08871 AFF1 AF4|MLLT2|PBM1 AF4/FMR2 family, member 1 protein-coding 13-PTNLD9-TUMOR_peak_15703 chr14 50420960 50421152 + 8.51330 NA Intergenic Intergenic -12061 NR_106724 102464828 NR_106724 MIR6076 hsa-mir-6076 microRNA 6076 ncRNA 13-PTNLD9-TUMOR_peak_54646 chr9 123691343 123691481 + 8.51330 NA promoter-TSS (NM_001190945) promoter-TSS (NM_001190945) 39 NM_001190945 7185 Hs.531251 NM_005658 HPRD:03418 TRAF1 EBI6|MGC:10353 TNF receptor-associated factor 1 protein-coding 13-PTNLD9-TUMOR_peak_52587 chr9 400549 400816 + 8.51330 NA intron (NM_001193536, intron 25 of 46) (CCA)n|Simple_repeat|Simple_repeat -69612 NM_001256876 23189 Hs.306764 NM_015158 HPRD:09651 KANK1 ANKRD15|CPSQ2|KANK KN motif and ankyrin repeat domains 1 protein-coding 13-PTNLD9-TUMOR_peak_49505 chr7 143503729 143503896 + 8.51330 NA Intergenic Intergenic -3271 NR_110549 653691 Hs.632030 NR_110549 FAM115D FAM139B family with sequence similarity 139, member B pseudo 13-PTNLD9-TUMOR_peak_34095 chr3 24535808 24535928 + 8.51330 NA non-coding (NR_046244, exon 1 of 2) non-coding (NR_046244, exon 1 of 2) 290 NR_046244 644990 Hs.631912 NR_046244 THRB-AS1 - THRB antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_1260 chr1 39981505 39981599 + 8.51330 NA intron (NM_181809, intron 3 of 6) CpG 24234 NM_181809 353500 Hs.472497 NM_181809 BMP8A - bone morphogenetic protein 8a protein-coding 13-PTNLD9-TUMOR_peak_23957 chr19 10771097 10771256 + 8.51330 NA intron (NM_153464, intron 1 of 17) MIRc|SINE|MIR 6239 NM_004516 3609 Hs.465885 NM_004516 HPRD:04420 ILF3 CBTF|DRBF|DRBP76|MMP4|MPHOSPH4|MPP4|NF-AT-90|NF110|NF110b|NF90|NF90a|NF90b|NFAR|NFAR-1|NFAR2|TCP110|TCP80 interleukin enhancer binding factor 3, 90kDa protein-coding 13-PTNLD9-TUMOR_peak_89 chr1 1510154 1510354 + 8.51330 NA promoter-TSS (NM_014188) promoter-TSS (NM_014188) 8 NM_014188 29101 Hs.30026 NM_014188 HPRD:13712 SSU72 HSPC182|PNAS-120 SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_22854 chr18 28619605 28619708 + 8.51330 NA intron (NM_001941, intron 1 of 15) intron (NM_001941, intron 1 of 15) 3125 NM_001941 1825 Hs.41690 NM_001941 HPRD:02604 DSC3 CDHF3|DSC|DSC1|DSC2|DSC4|HT-CP desmocollin 3 protein-coding 13-PTNLD9-TUMOR_peak_5211 chr1 205462429 205462678 + 8.51330 NA Intergenic Intergenic -11131 NM_212503 5129 Hs.445402 NM_002596 HPRD:01354 CDK18 PCTAIRE|PCTAIRE3|PCTK3 cyclin-dependent kinase 18 protein-coding 13-PTNLD9-TUMOR_peak_9221 chr11 17834957 17835243 + 8.51330 NA intron (NR_104041, intron 9 of 9) intron (NR_104041, intron 9 of 9) 77605 NM_004976 3746 Hs.552896 NM_004976 HPRD:15936 KCNC1 KV3.1|KV4|NGK2 potassium voltage-gated channel, Shaw-related subfamily, member 1 protein-coding 13-PTNLD9-TUMOR_peak_46064 chr6 132275997 132276091 + 8.50779 NA Intergenic Intergenic -3526 NM_001901 1490 Hs.410037 NM_001901 HPRD:00412 CTGF CCN2|HCS24|IGFBP8|NOV2 connective tissue growth factor protein-coding 13-PTNLD9-TUMOR_peak_28005 chr2 110774091 110774222 + 8.50779 NA Intergenic MSTB|LTR|ERVL-MaLR 29599 NR_046112 440894 Hs.516403 NR_046110 ENSG00000204588 LINC01123 - long intergenic non-protein coding RNA 1123 ncRNA 13-PTNLD9-TUMOR_peak_44239 chr6 26322905 26323299 + 8.50779 NA Intergenic tRNA-Arg-CGA|tRNA|tRNA -37375 NM_003543 8365 Hs.591790 NM_003543 HPRD:11919 HIST1H4H H4/h|H4FH histone cluster 1, H4h protein-coding 13-PTNLD9-TUMOR_peak_46139 chr6 138426573 138426735 + 8.50779 NA intron (NM_022121, intron 1 of 2) intron (NM_022121, intron 1 of 2) 2006 NM_022121 64065 Hs.201446 NM_022121 HPRD:17836 PERP KCP1|KRTCAP1|PIGPC1|THW|dJ496H19.1 PERP, TP53 apoptosis effector protein-coding 13-PTNLD9-TUMOR_peak_25362 chr19 49699914 49700179 + 8.50779 NA exon (NM_017636, exon 17 of 25) exon (NM_017636, exon 17 of 25) 39030 NM_017636 54795 Hs.467101 NM_017636 HPRD:09502 TRPM4 PFHB1B|TRPM4B transient receptor potential cation channel, subfamily M, member 4 protein-coding 13-PTNLD9-TUMOR_peak_11426 chr11 120202443 120202539 + 8.50779 NA 3' UTR (NM_001198671, exon 3 of 3) 3' UTR (NM_001198671, exon 3 of 3) -5127 NM_015313 23365 Hs.24598 NM_015313 HPRD:09207 ARHGEF12 LARG|PRO2792 Rho guanine nucleotide exchange factor (GEF) 12 protein-coding 13-PTNLD9-TUMOR_peak_21351 chr17 46205311 46205492 + 8.50779 NA Intergenic Intergenic 20454 NM_013323 29916 Hs.15827 NM_013323 HPRD:15410 SNX11 - sorting nexin 11 protein-coding 13-PTNLD9-TUMOR_peak_39429 chr4 140514296 140514569 + 8.50779 NA Intergenic Intergenic -36855 NM_030648 80854 Hs.480792 NM_030648 HPRD:16226 SETD7 KMT7|SET7|SET7/9|SET9 SET domain containing (lysine methyltransferase) 7 protein-coding 13-PTNLD9-TUMOR_peak_13657 chr12 104997851 104998154 + 8.50779 NA intron (NM_018413, intron 2 of 2) intron (NM_018413, intron 2 of 2) 12591 NR_037487 100500843 NR_037487 MIR3922 - microRNA 3922 ncRNA 13-PTNLD9-TUMOR_peak_30773 chr20 31147560 31147686 + 8.50779 NA intron (NM_001256798, intron 1 of 10) intron (NM_001256798, intron 1 of 10) 25252 NM_001256798 140688 Hs.516978 NM_080616 HPRD:10728 NOL4L C20orf112|C20orf113|dJ1184F4.2|dJ1184F4.4 nucleolar protein 4-like protein-coding 13-PTNLD9-TUMOR_peak_3658 chr1 151971476 151971692 + 8.50670 NA Intergenic Intergenic -4870 NM_002966 6281 Hs.143873 NM_002966 HPRD:00232 S100A10 42C|ANX2L|ANX2LG|CAL1L|CLP11|Ca[1]|GP11|P11|p10 S100 calcium binding protein A10 protein-coding 13-PTNLD9-TUMOR_peak_24751 chr19 35704867 35705070 + 8.50597 NA Intergenic Intergenic 14660 NM_152481 148109 Hs.128069 NM_152481 HPRD:08071 FAM187B TMEM162 family with sequence similarity 187, member B protein-coding 13-PTNLD9-TUMOR_peak_46636 chr7 578971 579280 + 8.50597 NA Intergenic Intergenic 19097 NR_033963 441307 Hs.521334 NR_033963 FLJ44511 - uncharacterized LOC441307 ncRNA 13-PTNLD9-TUMOR_peak_44779 chr6 35465207 35465369 + 8.50597 NA promoter-TSS (NM_003214) promoter-TSS (NM_003214) -427 NM_003214 7005 Hs.485205 NM_003214 HPRD:04411 TEAD3 DTEF-1|ETFR-1|TEAD-3|TEAD5|TEF-5|TEF5 TEA domain family member 3 protein-coding 13-PTNLD9-TUMOR_peak_32704 chr22 18769612 18769727 + 8.50597 NA non-coding (NR_003267, exon 5 of 13) non-coding (NR_003267, exon 5 of 13) 9805 NR_003267 2679 Hs.595809 NR_003267 ENSG00000197421 GGT3P GGT3 gamma-glutamyltransferase 3 pseudogene pseudo 13-PTNLD9-TUMOR_peak_4463 chr1 174945966 174946122 + 8.50597 NA intron (NM_001243765, intron 5 of 8) intron (NM_001243765, intron 5 of 8) 12139 NM_001243764 9910 Hs.585378 NM_014857 HPRD:16464 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1-like protein-coding 13-PTNLD9-TUMOR_peak_47254 chr7 37772648 37772766 + 8.50597 NA Intergenic Intergenic -7289 NM_181791 353345 Hs.688230 NM_181791 HPRD:16423 GPR141 PGR13 G protein-coupled receptor 141 protein-coding 13-PTNLD9-TUMOR_peak_42308 chr5 139599719 139600081 + 8.50597 NA intron (NM_032412, intron 2 of 2) intron (NM_032412, intron 2 of 2) 45247 NM_032412 84418 Hs.529798 NM_032412 CYSTM1 C5orf32 cysteine-rich transmembrane module containing 1 protein-coding 13-PTNLD9-TUMOR_peak_51628 chr8 113606685 113606794 + 8.50548 NA intron (NM_198124, intron 23 of 71) L1PA2|LINE|L1 -48983 NR_031745 100302225 NR_031745 miRBase:MI0010487 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 13-PTNLD9-TUMOR_peak_13228 chr12 67807411 67807598 + 8.49823 NA Intergenic Intergenic -106358 NR_103861 100507175 Hs.505986 NR_103861 ENSG00000203585 LOC100507175 - uncharacterized LOC100507175 ncRNA 13-PTNLD9-TUMOR_peak_48096 chr7 77039633 77039749 + 8.49823 NA intron (NM_017439, intron 1 of 30) intron (NM_017439, intron 1 of 30) -4824 NR_110073 101927243 Hs.547753 NR_110073 LOC101927243 - uncharacterized LOC101927243 ncRNA 13-PTNLD9-TUMOR_peak_25459 chr19 51041085 51041212 + 8.49823 NA intron (NM_001080457, intron 2 of 2) intron (NM_001080457, intron 2 of 2) -23201 NM_001024656 554235 Hs.436338 NM_001024656 HPRD:18692 ASPDH - aspartate dehydrogenase domain containing protein-coding 13-PTNLD9-TUMOR_peak_49079 chr7 130560179 130560324 + 8.49823 NA Intergenic Intergenic 1318 NR_029503 407021 NR_029503 MIR29A MIRN29|MIRN29A|hsa-mir-29|hsa-mir-29a|miRNA29A microRNA 29a ncRNA 13-PTNLD9-TUMOR_peak_45211 chr6 46724656 46724970 + 8.49823 NA intron (NM_001162435, intron 4 of 4) MLT1K|LTR|ERVL-MaLR 10159 NM_001162435 100287718 Hs.736491 NM_001162435 ENSG00000230062 ANKRD66 - ankyrin repeat domain 66 protein-coding 13-PTNLD9-TUMOR_peak_39644 chr4 152651350 152651599 + 8.49823 NA intron (NM_004564, intron 2 of 12) L1PBa1|LINE|L1 30701 NM_004564 5188 Hs.119316 NM_004564 HPRD:04706 GATB PET112|PET112L glutamyl-tRNA(Gln) amidotransferase, subunit B protein-coding 13-PTNLD9-TUMOR_peak_33561 chr3 3407414 3407602 + 8.49823 NA Intergenic Intergenic -186107 NM_001173482 51185 Hs.18925 NM_016302 HPRD:16750 CRBN MRT2|MRT2A cereblon protein-coding 13-PTNLD9-TUMOR_peak_36847 chr3 178276496 178276626 + 8.49823 NA promoter-TSS (NM_005832) promoter-TSS (NM_005832) 73 NM_001278911 10242 Hs.478368 NM_005832 HPRD:05557 KCNMB2 - potassium large conductance calcium-activated channel, subfamily M, beta member 2 protein-coding 13-PTNLD9-TUMOR_peak_46342 chr6 152279591 152279755 + 8.49823 NA intron (NM_001291230, intron 5 of 8) intron (NM_001291230, intron 5 of 8) 150859 NM_000125 2099 Hs.208124 NM_000125 HPRD:00589 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_39654 chr4 153027347 153027666 + 8.49823 NA Intergenic Intergenic 5536 NR_121627 100996286 Hs.322462 NR_121627 ENSG00000245954 LOC100996286 - uncharacterized LOC100996286 ncRNA 13-PTNLD9-TUMOR_peak_30242 chr20 443013 443325 + 8.49823 NA promoter-TSS (NM_144628) promoter-TSS (NM_144628) 28 NR_111901 128637 Hs.590876 NM_144628 HPRD:15472 TBC1D20 C20orf140|WARBM4 TBC1 domain family, member 20 protein-coding 13-PTNLD9-TUMOR_peak_19785 chr16 75584391 75584531 + 8.49823 NA intron (NR_074083, intron 2 of 6) intron (NR_074083, intron 2 of 6) 5723 NM_001077418 79583 Hs.156784 NM_001077416 ENSG00000205084 TMEM231 ALYE870|JBTS20|MKS11|PRO1886 transmembrane protein 231 protein-coding 13-PTNLD9-TUMOR_peak_30289 chr20 2281845 2282237 + 8.49823 NA intron (NM_003245, intron 1 of 12) MIR3|SINE|MIR 5428 NM_003245 7053 Hs.2022 NM_003245 HPRD:02584 TGM3 TGE transglutaminase 3 protein-coding 13-PTNLD9-TUMOR_peak_1977 chr1 60437188 60437419 + 8.49823 NA Intergenic Intergenic -44880 NM_000775 1573 Hs.152096 NM_000775 HPRD:03159 CYP2J2 CPJ2 cytochrome P450, family 2, subfamily J, polypeptide 2 protein-coding 13-PTNLD9-TUMOR_peak_42561 chr5 148442669 148442958 + 8.49823 NA promoter-TSS (NM_024577) promoter-TSS (NM_024577) -67 NR_122044 255187 Hs.149321 NR_122044 LOC255187 - uncharacterized LOC255187 ncRNA 13-PTNLD9-TUMOR_peak_27003 chr2 60824586 60824721 + 8.49823 NA Intergenic Intergenic -44020 NM_138559 53335 Hs.370549 NM_018014 HPRD:05949 BCL11A BCL11A-L|BCL11A-S|BCL11A-XL|BCL11a-M|CTIP1|EVI9|HBFQTL5|ZNF856 B-cell CLL/lymphoma 11A (zinc finger protein) protein-coding 13-PTNLD9-TUMOR_peak_44626 chr6 32604943 32605142 + 8.49823 NA promoter-TSS (NM_002122) promoter-TSS (NM_002122) -141 NM_002122 3117 Hs.387679 NM_002122 HPRD:06765 HLA-DQA1 CD|CELIAC1|DQ-A1|GSE|HLA-DQA major histocompatibility complex, class II, DQ alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_34987 chr3 73400639 73400825 + 8.49823 NA Intergenic Intergenic -169741 NR_121660 101927296 Hs.662049 NR_121660 LOC101927296 - uncharacterized LOC101927296 ncRNA 13-PTNLD9-TUMOR_peak_52242 chr8 137416361 137416641 + 8.49823 NA Intergenic AluSx1|SINE|Alu 946785 NM_006558 10656 Hs.444558 NM_006558 HPRD:10007 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH domain containing, RNA binding, signal transduction associated 3 protein-coding 13-PTNLD9-TUMOR_peak_37208 chr3 190084056 190084183 + 8.49823 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -21542 NM_006580 10686 Hs.251391 NM_006580 HPRD:04906 CLDN16 HOMG3|PCLN1 claudin 16 protein-coding 13-PTNLD9-TUMOR_peak_54075 chr9 97684635 97684883 + 8.49206 NA intron (NM_032823, intron 5 of 14) intron (NM_032823, intron 5 of 14) 112515 NR_031755 100313780 NR_031755 MIR2278 - microRNA 2278 ncRNA 13-PTNLD9-TUMOR_peak_30445 chr20 13010738 13010909 + 8.48787 NA intron (NM_018327, intron 1 of 11) intron (NM_018327, intron 1 of 11) 21196 NM_018327 55304 Hs.425023 NM_018327 HPRD:12765 SPTLC3 C20orf38|LCB2B|LCB3|SPT3|SPTLC2L|dJ718P11|dJ718P11.1|hLCB2b serine palmitoyltransferase, long chain base subunit 3 protein-coding 13-PTNLD9-TUMOR_peak_53942 chr9 92250009 92250215 + 8.48787 NA Intergenic Intergenic -4586 NR_024280 100129066 Hs.125947 NR_024280 UNQ6494 - uncharacterized LOC100129066 ncRNA 13-PTNLD9-TUMOR_peak_26291 chr2 23509753 23509896 + 8.48787 NA Intergenic Intergenic -98474 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch-like family member 29 protein-coding 13-PTNLD9-TUMOR_peak_53788 chr9 85554504 85554635 + 8.48787 NA Intergenic Intergenic 123474 NM_152573 158158 Hs.129136 NM_152573 HPRD:08337 RASEF RAB45 RAS and EF-hand domain containing protein-coding 13-PTNLD9-TUMOR_peak_3018 chr1 117494309 117494436 + 8.48787 NA intron (NM_020440, intron 4 of 8) intron (NM_020440, intron 4 of 8) 41683 NM_020440 5738 Hs.418093 NM_020440 HPRD:03124 PTGFRN CD315|CD9P-1|EWI-F|FPRP|SMAP-6 prostaglandin F2 receptor inhibitor protein-coding 13-PTNLD9-TUMOR_peak_56291 chrX 103401552 103401686 + 8.48787 NA promoter-TSS (NM_001012755) promoter-TSS (NM_001012755) 89 NM_001012755 401612 Hs.660022 NM_001012755 HPRD:18628 SLC25A53 MCART6 solute carrier family 25, member 53 protein-coding 13-PTNLD9-TUMOR_peak_54293 chr9 107669587 107669746 + 8.48787 NA intron (NM_005502, intron 1 of 49) intron (NM_005502, intron 1 of 49) 20861 NM_005502 19 Hs.659274 NM_005502 HPRD:02501 ABCA1 ABC-1|ABC1|CERP|HDLDT1|TGD ATP-binding cassette, sub-family A (ABC1), member 1 protein-coding 13-PTNLD9-TUMOR_peak_12793 chr12 52258014 52258204 + 8.48787 NA Intergenic CpG -23684 NM_001130015 341405 Hs.433492 NM_182608 HPRD:12465 ANKRD33 C12orf7|PANKY ankyrin repeat domain 33 protein-coding 13-PTNLD9-TUMOR_peak_24343 chr19 17868117 17868240 + 8.48787 NA intron (NM_015122, intron 4 of 28) intron (NM_015122, intron 4 of 28) 5892 NM_001161359 23149 Hs.96485 NM_015122 HPRD:16887 FCHO1 - FCH domain only 1 protein-coding 13-PTNLD9-TUMOR_peak_44648 chr6 32989120 32989328 + 8.48787 NA Intergenic MER20|DNA|hAT-Charlie -11835 NM_002119 3111 Hs.631991 NM_002119 HPRD:00837 HLA-DOA HLA-DNA|HLA-DZA|HLADZ major histocompatibility complex, class II, DO alpha protein-coding 13-PTNLD9-TUMOR_peak_19414 chr16 56677370 56677627 + 8.48787 NA promoter-TSS (NR_003658) promoter-TSS (NR_003658) -101 NR_027781 326343 Hs.679600 NM_175620 MT1DP MTM metallothionein 1D, pseudogene pseudo 13-PTNLD9-TUMOR_peak_35921 chr3 131173437 131173537 + 8.48787 NA Intergenic MIRb|SINE|MIR 24590 NR_002985 677836 Hs.735762 NR_002985 SNORA58 ACA58 small nucleolar RNA, H/ACA box 58 snoRNA 13-PTNLD9-TUMOR_peak_24735 chr19 35285524 35285736 + 8.48787 NA Intergenic AluSz|SINE|Alu -21496 NM_001007248 148103 Hs.590961 NM_001007247 HPRD:18355 ZNF599 - zinc finger protein 599 protein-coding 13-PTNLD9-TUMOR_peak_30113 chr2 238208668 238208903 + 8.48787 NA Intergenic Intergenic 114065 NM_057167 1293 Hs.233240 NM_004369 HPRD:00371 COL6A3 - collagen, type VI, alpha 3 protein-coding 13-PTNLD9-TUMOR_peak_22508 chr18 6781981 6782146 + 8.48787 NA Intergenic Intergenic -52369 NM_001010000 79822 Hs.183114 NM_030672 HPRD:10961 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 13-PTNLD9-TUMOR_peak_54826 chr9 130717718 130717995 + 8.48787 NA intron (NM_001035254, intron 1 of 10) intron (NM_001035254, intron 1 of 10) -4863 NM_203305 399665 Hs.535972 NM_203305 HPRD:13262 FAM102A C9orf132|EEIG1|SYM-3A|bA203J24.7 family with sequence similarity 102, member A protein-coding 13-PTNLD9-TUMOR_peak_44802 chr6 36270370 36270525 + 8.48787 NA intron (NM_173676, intron 6 of 7) MER5A|DNA|hAT-Charlie 32210 NM_001145717 285848 Hs.407002 NM_173676 HPRD:17869 PNPLA1 ARCI10|dJ50J22.1 patatin-like phospholipase domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_38611 chr4 76650237 76650461 + 8.48577 NA intron (NM_003715, intron 1 of 21) CpG 643 NM_001290049 8615 Hs.744877 NM_003715 HPRD:09135 USO1 P115|TAP|VDP USO1 vesicle transport factor protein-coding 13-PTNLD9-TUMOR_peak_35688 chr3 125416954 125417159 + 8.48577 NA Intergenic HERVE-int|LTR|ERV1 92339 NR_031687 100302204 NR_031687 miRBase:MI0006421 MIR548I1 MIR548I-1|MIRN548I1|hsa-mir-548i-1 microRNA 548i-1 ncRNA 13-PTNLD9-TUMOR_peak_21432 chr17 48128517 48128634 + 8.48280 NA non-coding (NR_038230, exon 3 of 3) non-coding (NR_038230, exon 3 of 3) 4528 NR_038230 284080 Hs.274864 NR_038230 ENSG00000246640 LOC284080 - uncharacterized LOC284080 ncRNA 13-PTNLD9-TUMOR_peak_40972 chr5 57756315 57756768 + 8.48280 NA promoter-TSS (NM_001252226) promoter-TSS (NM_001252226) -575 NM_001252226 10769 Hs.398157 NM_006622 HPRD:06118 PLK2 SNK|hPlk2|hSNK polo-like kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_11116 chr11 107364909 107365026 + 8.48070 NA Intergenic Intergenic -36395 NM_152434 143884 Hs.212140 NM_152434 HPRD:13102 CWF19L2 - CWF19-like 2, cell cycle control (S. pombe) protein-coding 13-PTNLD9-TUMOR_peak_28292 chr2 121551360 121551495 + 8.48070 NA Intergenic MIRc|SINE|MIR -3440 NM_005270 2736 Hs.111867 NM_005270 HPRD:01312 GLI2 HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 13-PTNLD9-TUMOR_peak_44322 chr6 27759945 27760338 + 8.48070 NA Intergenic Intergenic 15568 NM_003519 8340 Hs.137594 NM_003519 HPRD:11898 HIST1H2BL H2B/c|H2BFC|dJ97D16.4 histone cluster 1, H2bl protein-coding 13-PTNLD9-TUMOR_peak_29553 chr2 202148593 202148943 + 8.48070 NA intron (NR_111983, intron 7 of 8) SVA_E|Other|Other 23545 NM_033356 841 Hs.599762 NM_001228 HPRD:03459 CASP8 ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5 caspase 8, apoptosis-related cysteine peptidase protein-coding 13-PTNLD9-TUMOR_peak_5255 chr1 206311551 206311707 + 8.48070 NA Intergenic Intergenic -5830 NM_001910 1510 Hs.644082 NM_001910 HPRD:00294 CTSE CATE cathepsin E protein-coding 13-PTNLD9-TUMOR_peak_53969 chr9 93666178 93666444 + 8.48070 NA Intergenic HERVK13-int|LTR|ERVK 76609 NM_001174167 6850 Hs.371720 NM_003177 HPRD:02514 SYK p72-Syk spleen tyrosine kinase protein-coding 13-PTNLD9-TUMOR_peak_7774 chr10 75936899 75937090 + 8.48070 NA intron (NM_001123, intron 1 of 10) intron (NM_001123, intron 1 of 10) 747 NM_001202449 132 Hs.656586 NM_001123 HPRD:00039 ADK AK adenosine kinase protein-coding 13-PTNLD9-TUMOR_peak_11261 chr11 113560951 113561082 + 8.48070 NA exon (NM_030770, exon 11 of 13) exon (NM_030770, exon 11 of 13) 16079 NR_110047 80975 Hs.46720 NM_030770 HPRD:05995 TMPRSS5 SPINESIN transmembrane protease, serine 5 protein-coding 13-PTNLD9-TUMOR_peak_4000 chr1 157939689 157939801 + 8.48070 NA Intergenic L2c|LINE|L2 -23318 NM_001286349 55243 Hs.272234 NM_018240 HPRD:06306 KIRREL NEPH1 kin of IRRE like (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_55238 chrUn_gl000216 36671 36799 + 8.48070 NA NA (CATTC)n|Satellite|Satellite NA NA 13-PTNLD9-TUMOR_peak_26445 chr2 28866248 28866513 + 8.48070 NA 3' UTR (NM_153021, exon 58 of 58) 3' UTR (NM_153021, exon 58 of 58) -108234 NM_206876 5500 Hs.702907 NM_002709 HPRD:11792 PPP1CB HEL-S-80p|PP-1B|PP1B|PP1beta|PPP1CD protein phosphatase 1, catalytic subunit, beta isozyme protein-coding 13-PTNLD9-TUMOR_peak_52357 chr8 142384713 142385007 + 8.48070 NA Intergenic Intergenic -7495 NM_005293 2843 Hs.188859 NM_005293 HPRD:03550 GPR20 - G protein-coupled receptor 20 protein-coding 13-PTNLD9-TUMOR_peak_37010 chr3 185034907 185035155 + 8.48070 NA intron (NM_001242317, intron 2 of 12) intron (NM_001242317, intron 2 of 12) 34302 NR_038322 9175 Hs.591306 NM_004721 HPRD:05372 MAP3K13 LZK|MEKK13|MLK mitogen-activated protein kinase kinase kinase 13 protein-coding 13-PTNLD9-TUMOR_peak_52366 chr8 142455576 142455853 + 8.47981 NA intron (NR_102363, intron 19 of 27) intron (NR_102363, intron 19 of 27) 24226 NM_032611 11156 Hs.43666 NM_007079 PTP4A3 PRL-3|PRL-R|PRL3 protein tyrosine phosphatase type IVA, member 3 protein-coding 13-PTNLD9-TUMOR_peak_46653 chr7 953780 954091 + 8.47599 NA intron (NM_001284311, intron 2 of 8) intron (NM_001284311, intron 2 of 8) 6591 NM_001284311 11033 Hs.602573 NM_006869 HPRD:09733 ADAP1 CENTA1|GCS1L|p42IP4 ArfGAP with dual PH domains 1 protein-coding 13-PTNLD9-TUMOR_peak_15474 chr14 32548239 32548333 + 8.47599 NA intron (NM_001030055, intron 1 of 6) intron (NM_001030055, intron 1 of 6) 1791 NM_001030055 394 Hs.592313 NM_001173 HPRD:04060 ARHGAP5 GFI2|RhoGAP5|p190-B|p190BRhoGAP Rho GTPase activating protein 5 protein-coding 13-PTNLD9-TUMOR_peak_49293 chr7 137671123 137671443 + 8.47599 NA intron (NM_194071, intron 1 of 11) intron (NM_194071, intron 1 of 11) 15564 NM_194071 64764 Hs.490273 NM_194071 HPRD:16391 CREB3L2 BBF2H7 cAMP responsive element binding protein 3-like 2 protein-coding 13-PTNLD9-TUMOR_peak_15316 chr14 23446979 23447085 + 8.47599 NA promoter-TSS (NM_198086) promoter-TSS (NM_198086) -600 NM_198086 84962 Hs.655832 NM_032876 HPRD:16426 AJUBA JUB ajuba LIM protein protein-coding 13-PTNLD9-TUMOR_peak_31032 chr20 38482451 38482646 + 8.47182 NA Intergenic MamSINE1|SINE|tRNA -150555 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 - long intergenic non-protein coding RNA 1370 ncRNA 13-PTNLD9-TUMOR_peak_33746 chr3 10800385 10800491 + 8.47182 NA TTS (NR_027102) TTS (NR_027102) 5439 NR_027102 285370 Hs.157613 NR_027102 ENSG00000226567 LINC00606 - long intergenic non-protein coding RNA 606 ncRNA 13-PTNLD9-TUMOR_peak_42694 chr5 151040256 151040497 + 8.47182 NA TTS (NM_003118) TTS (NM_003118) -16130 NR_109873 101927096 Hs.571023 NR_109873 ENSG00000249035 CTB-113P19.1 - uncharacterized LOC101927096 ncRNA 13-PTNLD9-TUMOR_peak_51118 chr8 70401115 70401225 + 8.47182 NA intron (NM_001128204, intron 1 of 21) LTR53|LTR|ERVL -3858 NM_001128206 23213 Hs.409602 NM_015170 HPRD:15450 SULF1 HSULF-1|SULF-1 sulfatase 1 protein-coding 13-PTNLD9-TUMOR_peak_29303 chr2 186995154 186995335 + 8.47182 NA Intergenic Intergenic -44200 NR_110218 101927217 Hs.130011 NR_110218 LINC01473 - long intergenic non-protein coding RNA 1473 ncRNA 13-PTNLD9-TUMOR_peak_47925 chr7 73581809 73581909 + 8.47182 NA Intergenic AluSz6|SINE|Alu -6847 NM_031992 7458 Hs.520943 NM_022170 HPRD:11940 EIF4H WBSCR1|WSCR1|eIF-4H eukaryotic translation initiation factor 4H protein-coding 13-PTNLD9-TUMOR_peak_29428 chr2 196385390 196385619 + 8.47182 NA Intergenic LTR35|LTR|ERV1 -136028 NM_001127257 57181 Hs.650158 NM_020342 HPRD:10572 SLC39A10 LZT-Hs2 solute carrier family 39 (zinc transporter), member 10 protein-coding 13-PTNLD9-TUMOR_peak_77 chr1 1296045 1296224 + 8.47182 NA intron (NM_001282582, intron 1 of 10) intron (NM_001282582, intron 1 of 10) 1023 NM_001282583 54587 Hs.515687 NM_032348 HPRD:11330 MXRA8 - matrix-remodelling associated 8 protein-coding 13-PTNLD9-TUMOR_peak_15294 chr14 23058704 23058801 + 8.47182 NA promoter-TSS (NM_001344) promoter-TSS (NM_001344) -609 NM_001344 1603 Hs.82890 NM_001344 HPRD:02589 DAD1 OST2 defender against cell death 1 protein-coding 13-PTNLD9-TUMOR_peak_12858 chr12 53255969 53256064 + 8.47182 NA Intergenic Intergenic -13238 NM_173352 196374 Hs.665267 NM_173352 HPRD:17171 KRT78 CK-78|K5B|K78|Kb40 keratin 78 protein-coding 13-PTNLD9-TUMOR_peak_15217 chr14 19933091 19933425 + 8.46222 NA Intergenic Intergenic -7924 NR_110526 503639 Hs.659013 NM_001013701 DUXAP10 - double homeobox A pseudogene 10 pseudo 13-PTNLD9-TUMOR_peak_28295 chr2 121672663 121672930 + 8.45797 NA intron (NM_005270, intron 1 of 12) intron (NM_005270, intron 1 of 12) 117929 NM_005270 2736 Hs.111867 NM_005270 HPRD:01312 GLI2 HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 13-PTNLD9-TUMOR_peak_7600 chr10 71198376 71198537 + 8.45797 NA Intergenic Intergenic -12770 NM_012339 23555 Hs.499941 NM_012339 HPRD:15511 TSPAN15 2700063A19Rik|NET-7|NET7|TM4SF15 tetraspanin 15 protein-coding 13-PTNLD9-TUMOR_peak_49420 chr7 141724456 141724649 + 8.45797 NA intron (NM_004668, intron 7 of 47) intron (NM_004668, intron 7 of 47) 28873 NM_004668 8972 Hs.122785 NM_004668 HPRD:01104 MGAM MG|MGA maltase-glucoamylase (alpha-glucosidase) protein-coding 13-PTNLD9-TUMOR_peak_10656 chr11 75273252 75273395 + 8.45797 NA 5' UTR (NM_001235, exon 1 of 5) 5' UTR (NM_001235, exon 1 of 5) 222 NM_001235 871 Hs.596449 NM_001235 HPRD:02968 SERPINH1 AsTP3|CBP1|CBP2|HSP47|OI10|PPROM|RA-A47|SERPINH2|gp46 serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1) protein-coding 13-PTNLD9-TUMOR_peak_1147 chr1 36787112 36787439 + 8.45797 NA TTS (NM_024676) TTS (NM_024676) 2480 NM_018166 55194 Hs.87016 NM_018166 HPRD:07690 EVA1B C1orf78|FAM176B eva-1 homolog B (C. elegans) protein-coding 13-PTNLD9-TUMOR_peak_52501 chr8 145203468 145203588 + 8.45797 NA promoter-TSS (NM_001288814) promoter-TSS (NM_001288814) -20 NM_001288814 727957 Hs.443139 NM_032450 ENSG00000179832 MROH1 HEATR7A maestro heat-like repeat family member 1 protein-coding 13-PTNLD9-TUMOR_peak_41645 chr5 102560195 102560532 + 8.45230 NA Intergenic Intergenic -34079 NM_033211 90355 Hs.482976 NM_033211 HPRD:12383 C5orf30 - chromosome 5 open reading frame 30 protein-coding 13-PTNLD9-TUMOR_peak_9435 chr11 32728693 32728826 + 8.45230 NA intron (NM_001008391, intron 3 of 17) intron (NM_001008391, intron 3 of 17) 87445 NM_001008391 493860 Hs.706808 NM_001008391 HPRD:17414 CCDC73 NY-SAR-79 coiled-coil domain containing 73 protein-coding 13-PTNLD9-TUMOR_peak_5761 chr1 229327899 229328033 + 8.45230 NA Intergenic L1ME5|LINE|L1 -78843 NM_001271998 5867 Hs.296169 NM_004578 HPRD:01541 RAB4A HRES-1|HRES-1/RAB4|HRES1|RAB4 RAB4A, member RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_31524 chr20 51266342 51266642 + 8.45230 NA non-coding (NR_110038, exon 3 of 3) non-coding (NR_110038, exon 3 of 3) 29115 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 13-PTNLD9-TUMOR_peak_14794 chr13 52849565 52849755 + 8.45230 NA Intergenic L1PA2|LINE|L1 -58770 NR_120400 103191607 NR_120400 LOC103191607 - uncharacterized LOC103191607 ncRNA 13-PTNLD9-TUMOR_peak_21393 chr17 47472506 47472604 + 8.45230 NA Intergenic Intergenic 19665 NM_001281496 5245 Hs.514303 NM_002634 HPRD:01454 PHB HEL-215|HEL-S-54e|PHB1 prohibitin protein-coding 13-PTNLD9-TUMOR_peak_20333 chr17 5342483 5342687 + 8.45230 NA promoter-TSS (NM_001212) promoter-TSS (NM_001212) -114 NM_001212 708 Hs.555866 NM_001212 HPRD:03168 C1QBP GC1QBP|HABP1|SF2p32|gC1Q-R|gC1qR|p32 complement component 1, q subcomponent binding protein protein-coding 13-PTNLD9-TUMOR_peak_7289 chr10 48573202 48573456 + 8.45230 NA Intergenic MER121|DNA|TcMar? -134191 NM_004962 2662 Hs.2171 NM_004962 HPRD:03218 GDF10 BMP-3b|BMP3B growth differentiation factor 10 protein-coding 13-PTNLD9-TUMOR_peak_6333 chr10 4284041 4284185 + 8.45230 NA intron (NR_108040, intron 2 of 2) intron (NR_108040, intron 2 of 2) 1991 NR_108040 100652988 Hs.433011 NR_108040 LINC00702 - long intergenic non-protein coding RNA 702 ncRNA 13-PTNLD9-TUMOR_peak_40276 chr5 9535420 9535532 + 8.45230 NA intron (NM_003966, intron 1 of 22) intron (NM_003966, intron 1 of 22) 10757 NM_003966 9037 Hs.27621 NM_003966 HPRD:10219 SEMA5A SEMAF|semF sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A protein-coding 13-PTNLD9-TUMOR_peak_34769 chr3 58200304 58200761 + 8.45230 NA Intergenic Intergenic -3802 NM_001256560 1776 Hs.476453 NM_004944 HPRD:03764 DNASE1L3 DHP2|DNAS1L3|LSD|SLEB16 deoxyribonuclease I-like 3 protein-coding 13-PTNLD9-TUMOR_peak_41501 chr5 90432232 90432358 + 8.45230 NA intron (NR_003149, intron 87 of 89) intron (NR_003149, intron 87 of 89) 177924 NR_103548 100505994 Hs.628363 NR_103548 ENSG00000248323 LUCAT1 SCAL1 lung cancer associated transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_55558 chrX 13917797 13917903 + 8.45230 NA intron (NM_001001994, intron 1 of 6) MIR|SINE|MIR 38981 NM_001001994 2824 Hs.495710 NM_005278 HPRD:02082 GPM6B M6B glycoprotein M6B protein-coding 13-PTNLD9-TUMOR_peak_24761 chr19 35986323 35986576 + 8.45230 NA Intergenic Intergenic -5016 NM_001244847 388533 Hs.112457 NM_207392 HPRD:18262 KRTDAP KDAP|UNQ467 keratinocyte differentiation-associated protein protein-coding 13-PTNLD9-TUMOR_peak_51700 chr8 119111351 119111510 + 8.45230 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 12628 NM_000127 2131 Hs.492618 NM_000127 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_43833 chr6 13079427 13079658 + 8.45230 NA intron (NM_030948, intron 5 of 14) intron (NM_030948, intron 5 of 14) 216276 NM_001242698 100130357 Hs.657498 NM_001242698 LOC100130357 - uncharacterized LOC100130357 protein-coding 13-PTNLD9-TUMOR_peak_46252 chr6 148752733 148752859 + 8.45230 NA intron (NM_015278, intron 2 of 19) intron (NM_015278, intron 2 of 19) 89067 NM_015278 23328 Hs.193133 NM_015278 HPRD:06408 SASH1 SH3D6A|dJ323M4|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_17419 chr15 63449621 63449740 + 8.45230 NA promoter-TSS (NM_015920) promoter-TSS (NM_015920) 61 NM_015920 51065 Hs.108957 NM_015920 HPRD:18003 RPS27L - ribosomal protein S27-like protein-coding 13-PTNLD9-TUMOR_peak_31005 chr20 37468802 37469009 + 8.45230 NA intron (NM_015568, intron 2 of 10) intron (NM_015568, intron 2 of 10) 34557 NM_001172735 26051 Hs.45719 NM_015568 HPRD:15168 PPP1R16B ANKRD4|TIMAP protein phosphatase 1, regulatory subunit 16B protein-coding 13-PTNLD9-TUMOR_peak_33158 chr22 33199122 33199299 + 8.45230 NA intron (NM_000362, intron 1 of 4) intron (NM_000362, intron 1 of 4) 2408 NM_000362 7078 Hs.644633 NM_000362 HPRD:01785 TIMP3 HSMRK222|K222|K222TA2|SFD TIMP metallopeptidase inhibitor 3 protein-coding 13-PTNLD9-TUMOR_peak_29359 chr2 191502286 191502508 + 8.45230 NA Intergenic Intergenic -11451 NM_005966 4664 Hs.107474 NM_005966 HPRD:02881 NAB1 - NGFI-A binding protein 1 (EGR1 binding protein 1) protein-coding 13-PTNLD9-TUMOR_peak_54198 chr9 101397754 101397875 + 8.45230 NA intron (NM_005458, intron 1 of 18) intron (NM_005458, intron 1 of 18) 73665 NM_005458 9568 Hs.198612 NM_005458 HPRD:09552 GABBR2 GABABR2|GPR51|GPRC3B|HG20|HRIHFB2099 gamma-aminobutyric acid (GABA) B receptor, 2 protein-coding 13-PTNLD9-TUMOR_peak_40663 chr5 38808407 38808563 + 8.45230 NA intron (NR_109951, intron 1 of 3) intron (NR_109951, intron 1 of 3) 37446 NR_109951 101929768 Hs.546623 NR_109951 OSMR-AS1 CTD-2127H9.1 OSMR antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_28890 chr2 161150969 161151089 + 8.45230 NA intron (NM_016836, intron 6 of 13) intron (NM_016836, intron 6 of 13) -22623 NR_103775 100505984 Hs.729532 NR_103775 ENSG00000115221 LOC100505984 - uncharacterized LOC100505984 ncRNA 13-PTNLD9-TUMOR_peak_46018 chr6 125918498 125918748 + 8.45230 NA Intergenic Intergenic -76876 NR_038906 643623 Hs.520367 NR_038906 ENSG00000224506 LOC643623 - uncharacterized LOC643623 ncRNA 13-PTNLD9-TUMOR_peak_51565 chr8 107790862 107791010 + 8.45230 NA Intergenic Intergenic -8464 NM_139166 137735 Hs.374668 NM_139166 HPRD:11608 ABRA STARS actin-binding Rho activating protein protein-coding 13-PTNLD9-TUMOR_peak_7858 chr10 81080883 81081198 + 8.45230 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -26180 NM_005729 10105 Hs.381072 NM_005729 HPRD:06839 PPIF CYP3|CyP-M|Cyp-D|CypD peptidylprolyl isomerase F protein-coding 13-PTNLD9-TUMOR_peak_40908 chr5 55575887 55576097 + 8.45230 NA Intergenic Intergenic -46806 NM_024669 79722 Hs.436214 NM_024669 HPRD:07758 ANKRD55 - ankyrin repeat domain 55 protein-coding 13-PTNLD9-TUMOR_peak_40060 chr4 187766358 187766491 + 8.44776 NA Intergenic Intergenic -121437 NM_005245 2195 Hs.481371 NM_005245 HPRD:02986 FAT1 CDHF7|CDHR8|FAT|ME5|hFat1 FAT atypical cadherin 1 protein-coding 13-PTNLD9-TUMOR_peak_2847 chr1 111991408 111991687 + 8.44776 NA promoter-TSS (NM_001688) promoter-TSS (NM_001688) -196 NM_001688 515 Hs.514870 NM_001688 ATP5F1 PIG47 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1 protein-coding 13-PTNLD9-TUMOR_peak_41143 chr5 68630732 68630841 + 8.44776 NA Intergenic Intergenic -2166 NM_001297696 202243 Hs.654850 NM_176816 HPRD:13774 CCDC125 KENAE coiled-coil domain containing 125 protein-coding 13-PTNLD9-TUMOR_peak_28288 chr2 121493400 121493707 + 8.44776 NA Intergenic CpG -61314 NM_005270 2736 Hs.111867 NM_005270 HPRD:01312 GLI2 HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 13-PTNLD9-TUMOR_peak_7248 chr10 47371520 47371777 + 8.44776 NA Intergenic AluJb|SINE|Alu -8072 NR_027634 439965 Hs.283521 NR_027634 FAM35DP FAM35B2 family with sequence similarity 35, member A pseudogene pseudo 13-PTNLD9-TUMOR_peak_48793 chr7 107580254 107580513 + 8.44772 NA intron (NM_002291, intron 25 of 33) intron (NM_002291, intron 25 of 33) 48831 NM_000108 1738 Hs.131711 NM_000108 HPRD:02006 DLD DLDD|DLDH|E3|GCSL|LAD|PHE3 dihydrolipoamide dehydrogenase protein-coding 13-PTNLD9-TUMOR_peak_30366 chr20 5988940 5989098 + 8.44772 NA intron (NM_001127458, intron 1 of 6) intron (NM_001127458, intron 1 of 6) 1121 NM_001127458 54675 Hs.743956 NM_019095 HPRD:12187 CRLS1 C20orf155|CLS|CLS1|GCD10|dJ967N21.6 cardiolipin synthase 1 protein-coding 13-PTNLD9-TUMOR_peak_39163 chr4 119496366 119496515 + 8.44772 NA Intergenic L1MA9|LINE|L1 -16459 NR_109983 729218 Hs.448518 NR_103825 LOC729218 - uncharacterized LOC729218 pseudo 13-PTNLD9-TUMOR_peak_24411 chr19 18607066 18607253 + 8.44772 NA intron (NM_006532, intron 1 of 11) intron (NM_006532, intron 1 of 11) 25778 NM_006532 8178 Hs.515260 NM_006532 HPRD:02615 ELL C19orf17|ELL1|MEN|PPP1R68 elongation factor RNA polymerase II protein-coding 13-PTNLD9-TUMOR_peak_29002 chr2 168640191 168640473 + 8.44772 NA Intergenic Intergenic -34850 NM_020981 8708 Hs.735833 NM_020981 HPRD:04369 B3GALT1 beta3Gal-T1 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1 protein-coding 13-PTNLD9-TUMOR_peak_56643 chrX 152094831 152095130 + 8.44772 NA intron (NM_001178107, intron 11 of 22) intron (NM_001178107, intron 11 of 22) 8571 NM_001178113 7739 Hs.16622 NM_007150 HPRD:02306 ZNF185 - zinc finger protein 185 (LIM domain) protein-coding 13-PTNLD9-TUMOR_peak_34691 chr3 53839036 53839391 + 8.44772 NA intron (NM_000720, intron 46 of 48) intron (NM_000720, intron 46 of 48) 41207 NM_018397 55349 Hs.126688 NM_018397 CHDH - choline dehydrogenase protein-coding 13-PTNLD9-TUMOR_peak_694 chr1 24345283 24345579 + 8.44772 NA Intergenic Intergenic -38478 NM_006625 10772 Hs.3530 NM_006625 HPRD:05562 SRSF10 FUSIP1|FUSIP2|NSSR|PPP1R149|SFRS13|SFRS13A|SRp38|SRrp40|TASR|TASR1|TASR2 serine/arginine-rich splicing factor 10 protein-coding 13-PTNLD9-TUMOR_peak_5871 chr1 233658891 233659116 + 8.44772 NA Intergenic MLT1J|LTR|ERVL-MaLR -90747 NM_002245 3775 Hs.208544 NM_002245 HPRD:03447 KCNK1 DPK|HOHO|K2P1|K2p1.1|KCNO1|TWIK-1|TWIK1 potassium channel, subfamily K, member 1 protein-coding 13-PTNLD9-TUMOR_peak_7171 chr10 44359370 44359577 + 8.44772 NA intron (NR_038268, intron 2 of 4) intron (NR_038268, intron 2 of 4) 4614 NR_038268 100506835 Hs.462615 NR_038268 ENSG00000226808 LINC00840 - long intergenic non-protein coding RNA 840 ncRNA 13-PTNLD9-TUMOR_peak_29324 chr2 189246508 189246639 + 8.44772 NA intron (NR_045563, intron 2 of 12) intron (NR_045563, intron 2 of 12) 84354 NR_030287 693146 NR_030287 miRBase:MI0003567 MIR561 MIRN561|hsa-mir-561 microRNA 561 ncRNA 13-PTNLD9-TUMOR_peak_54013 chr9 95553207 95553302 + 8.44772 NA Intergenic MER21-int|LTR|ERVL -18639 NR_026868 138649 Hs.643597 NM_001010925 HPRD:16490 ANKRD19P ANKRD19|bA526D8.2 ankyrin repeat domain 19, pseudogene pseudo 13-PTNLD9-TUMOR_peak_1297 chr1 40609766 40609896 + 8.44634 NA Intergenic Intergenic -17210 NM_012421 6018 Hs.205627 NM_012421 HPRD:01614 RLF ZN-15L|ZNF292L rearranged L-myc fusion protein-coding 13-PTNLD9-TUMOR_peak_55053 chr9 139796952 139797080 + 8.44634 NA intron (NM_021138, intron 4 of 10) intron (NM_021138, intron 4 of 10) 15831 NR_039697 100616480 NR_039697 MIR4479 - microRNA 4479 ncRNA 13-PTNLD9-TUMOR_peak_28562 chr2 135812920 135813065 + 8.44634 NA intron (NM_001172435, intron 2 of 24) AluJb|SINE|Alu 3157 NM_001172435 22930 Hs.306327 NM_012233 HPRD:16002 RAB3GAP1 P130|RAB3GAP|RAB3GAP130|WARBM1 RAB3 GTPase activating protein subunit 1 (catalytic) protein-coding 13-PTNLD9-TUMOR_peak_37593 chr4 1753992 1754525 + 8.44634 NA Intergenic Intergenic 31041 NM_006342 10460 Hs.104019 NM_006342 HPRD:05601 TACC3 ERIC-1|ERIC1 transforming, acidic coiled-coil containing protein 3 protein-coding 13-PTNLD9-TUMOR_peak_20085 chr16 88717880 88718100 + 8.44634 NA promoter-TSS (NM_000101) promoter-TSS (NM_000101) -498 NM_000101 1535 Hs.513803 NM_000101 HPRD:01989 CYBA p22-PHOX cytochrome b-245, alpha polypeptide protein-coding 13-PTNLD9-TUMOR_peak_41634 chr5 102007354 102007488 + 8.44634 NA promoter-TSS (NR_103753) promoter-TSS (NR_103753) -253 NR_103753 285708 Hs.533011 NR_103753 LINC00491 - long intergenic non-protein coding RNA 491 ncRNA 13-PTNLD9-TUMOR_peak_35682 chr3 125327321 125327532 + 8.44634 NA Intergenic Intergenic -13045 NM_022776 114885 Hs.477440 NM_022776 HPRD:09481 OSBPL11 ORP-11|ORP11|OSBP12|TCCCIA00292 oxysterol binding protein-like 11 protein-coding 13-PTNLD9-TUMOR_peak_5951 chr1 235247108 235247250 + 8.44247 NA Intergenic Intergenic 44073 NR_002956 677802 Hs.744743 NR_002956 SNORA14B ACA14b small nucleolar RNA, H/ACA box 14B snoRNA 13-PTNLD9-TUMOR_peak_13271 chr12 69498922 69499147 + 8.43563 NA Intergenic Intergenic -134283 NM_001300947 11052 Hs.369606 NM_007007 ENSG00000111605 CPSF6 CFIM|CFIM68|HPBRII-4|HPBRII-7 cleavage and polyadenylation specific factor 6, 68kDa protein-coding 13-PTNLD9-TUMOR_peak_23159 chr18 47447736 47447964 + 8.43563 NA intron (NM_001080467, intron 17 of 39) intron (NM_001080467, intron 17 of 39) 107457 NR_117096 103091864 Hs.646459 NR_117096 SNHG22 SCARNA17HG small nucleolar RNA host gene 22 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_17932 chr15 89166517 89166612 + 8.43563 NA intron (NM_022767, intron 1 of 3) intron (NM_022767, intron 1 of 3) 2037 NM_022767 64782 Hs.436102 NM_022767 HPRD:08573 AEN ISG20L1|pp12744 apoptosis enhancing nuclease protein-coding 13-PTNLD9-TUMOR_peak_11684 chr11 130767299 130767480 + 8.43563 NA intron (NM_001301089, intron 8 of 10) intron (NM_001301089, intron 8 of 10) 18993 NM_014758 399979 Hs.444024 NM_014758 HPRD:18621 SNX19 CHET8 sorting nexin 19 protein-coding 13-PTNLD9-TUMOR_peak_50958 chr8 55174150 55174498 + 8.43563 NA Intergenic Intergenic 126543 NM_014175 29088 Hs.18349 NM_014175 MRPL15 L15mt|MRP-L15|MRP-L7|RPML7 mitochondrial ribosomal protein L15 protein-coding 13-PTNLD9-TUMOR_peak_46709 chr7 2300559 2300731 + 8.43563 NA intron (NM_013321, intron 7 of 10) intron (NM_013321, intron 7 of 10) -3433 NR_106895 102465503 NR_106895 MIR6836 hsa-mir-6836 microRNA 6836 ncRNA 13-PTNLD9-TUMOR_peak_21139 chr17 41855754 41855904 + 8.43563 NA intron (NM_004090, intron 1 of 2) CpG 539 NM_004090 1845 Hs.181046 NM_004090 HPRD:02553 DUSP3 VHR dual specificity phosphatase 3 protein-coding 13-PTNLD9-TUMOR_peak_47374 chr7 44790710 44790823 + 8.43563 NA intron (NM_031449, intron 1 of 18) intron (NM_031449, intron 1 of 18) 2236 NM_031449 83637 Hs.77978 NM_031449 HPRD:13225 ZMIZ2 NET27|TRAFIP20|ZIMP7|hZIMP7 zinc finger, MIZ-type containing 2 protein-coding 13-PTNLD9-TUMOR_peak_29796 chr2 217639494 217639617 + 8.43563 NA Intergenic Intergenic -79283 NM_000599 3488 Hs.607212 NM_000599 HPRD:00901 IGFBP5 IBP5 insulin-like growth factor binding protein 5 protein-coding 13-PTNLD9-TUMOR_peak_48576 chr7 100816823 100816966 + 8.43563 NA intron (NM_198571, intron 2 of 3) CpG-24723 6663 NM_198571 375607 Hs.213044 NM_198571 HPRD:13434 NAT16 C7orf52 N-acetyltransferase 16 (GCN5-related, putative) protein-coding 13-PTNLD9-TUMOR_peak_31752 chr20 60718364 60718494 + 8.43563 NA promoter-TSS (NM_198935) promoter-TSS (NM_198935) 85 NM_002792 5688 Hs.233952 NM_002792 HPRD:05967 PSMA7 C6|HSPC|RC6-1|XAPC7 proteasome (prosome, macropain) subunit, alpha type, 7 protein-coding 13-PTNLD9-TUMOR_peak_32247 chr21 37305929 37306061 + 8.43563 NA Intergenic Intergenic 70970 NR_110418 101928269 Hs.589909 NR_110418 ENSG00000159216 LOC101928269 - uncharacterized LOC101928269 ncRNA 13-PTNLD9-TUMOR_peak_18257 chr16 2551310 2551588 + 8.43563 NA 3' UTR (NM_001199107, exon 8 of 8) 3' UTR (NM_001199107, exon 8 of 8) -12278 NM_001198569 527 Hs.389107 NM_001694 HPRD:00162 ATP6V0C ATP6C|ATP6L|ATPL|VATL|VPPC|Vma3 ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c protein-coding 13-PTNLD9-TUMOR_peak_34639 chr3 52029943 52030074 + 8.43563 NA promoter-TSS (NM_000992) promoter-TSS (NM_000992) -50 NM_000992 6159 Hs.425125 NM_000992 HPRD:03495 RPL29 HIP|HUMRPL29|L29|RPL29P10|RPL29_3_370 ribosomal protein L29 protein-coding 13-PTNLD9-TUMOR_peak_12841 chr12 52887045 52887334 + 8.43561 NA promoter-TSS (NM_005554) promoter-TSS (NM_005554) -8 NM_005554 3853 Hs.700779 NM_005554 HPRD:01011 KRT6A CK6A|CK6C|CK6D|K6A|K6C|K6D|KRT6C|KRT6D|PC3 keratin 6A protein-coding 13-PTNLD9-TUMOR_peak_9082 chr11 12107869 12108050 + 8.43083 NA Intergenic Intergenic -24164 NM_014632 9645 Hs.501928 NM_014632 HPRD:10085 MICAL2 MICAL-2|MICAL2PV1|MICAL2PV2 microtubule associated monooxygenase, calponin and LIM domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_52323 chr8 141607933 141608099 + 8.43083 NA intron (NM_012154, intron 1 of 18) intron (NM_012154, intron 1 of 18) 37630 NM_012154 27161 Hs.743313 NM_012154 HPRD:06943 AGO2 EIF2C2|Q10 argonaute RISC catalytic component 2 protein-coding 13-PTNLD9-TUMOR_peak_49163 chr7 132440998 132441551 + 8.43083 NA Intergenic Intergenic 107721 NR_046323 286023 Hs.671875 NM_173682 HPRD:08276 FLJ40288 - uncharacterized FLJ40288 ncRNA 13-PTNLD9-TUMOR_peak_5555 chr1 224156959 224157130 + 8.42534 NA Intergenic L2a|LINE|L2 -123370 NM_005426 7159 Hs.523968 NM_005426 HPRD:11803 TP53BP2 53BP2|ASPP2|BBP|P53BP2|PPP1R13A tumor protein p53 binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_38322 chr4 49134279 49134567 + 8.42234 NA Intergenic (CATTC)n|Satellite|Satellite 145764 NM_001286791 80157 Hs.479703 NM_025087 HPRD:08638 CWH43 CWH43-C cell wall biogenesis 43 C-terminal homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_52670 chr9 4666417 4666548 + 8.41572 NA 5' UTR (NM_001039395, exon 1 of 11) 5' UTR (NM_001039395, exon 1 of 11) 192 NM_001039395 55064 Hs.179615 NM_017985 HPRD:12973 SPATA6L C9orf68|bA6J24.2 spermatogenesis associated 6-like protein-coding 13-PTNLD9-TUMOR_peak_35273 chr3 107741509 107741821 + 8.41572 NA Intergenic LTR35A|LTR|ERV1 68270 NM_198793 961 Hs.446414 NM_001777 HPRD:03017 CD47 IAP|MER6|OA3 CD47 molecule protein-coding 13-PTNLD9-TUMOR_peak_31469 chr20 49461386 49461513 + 8.41572 NA intron (NM_198799, intron 4 of 4) intron (NM_198799, intron 4 of 4) 50018 NM_001010974 55653 Hs.381178 NM_017843 HPRD:06314 BCAS4 CNOL breast carcinoma amplified sequence 4 protein-coding 13-PTNLD9-TUMOR_peak_14886 chr13 77460457 77460647 + 8.41512 NA promoter-TSS (NM_138444) promoter-TSS (NM_138444) -12 NM_138444 115207 Hs.644125 NM_138444 HPRD:11060 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 13-PTNLD9-TUMOR_peak_44602 chr6 32081824 32081926 + 8.41512 NA Intergenic Intergenic -4724 NM_019105 7148 Hs.485104 NM_019105 HPRD:02993 TNXB EDS3|HXBL|TENX|TN-X|TNX|TNXB1|TNXB2|TNXBS|XB|XBS tenascin XB protein-coding 13-PTNLD9-TUMOR_peak_11664 chr11 130406657 130406781 + 8.41512 NA Intergenic Intergenic 87850 NM_139055 170689 Hs.534221 NM_139055 HPRD:06330 ADAMTS15 - ADAM metallopeptidase with thrombospondin type 1 motif, 15 protein-coding 13-PTNLD9-TUMOR_peak_18501 chr16 10971005 10971241 + 8.41512 NA promoter-TSS (NM_000246) promoter-TSS (NM_000246) 68 NM_001286403 4261 Hs.701991 NM_000246 HPRD:02475 CIITA C2TA|CIITAIV|MHC2TA|NLRA class II, major histocompatibility complex, transactivator protein-coding 13-PTNLD9-TUMOR_peak_49797 chr7 155339285 155339427 + 8.41512 NA Intergenic Intergenic -12817 NM_001103176 285888 Hs.146751 NM_001103176 ENSG00000146910 CNPY1 - canopy FGF signaling regulator 1 protein-coding 13-PTNLD9-TUMOR_peak_28885 chr2 161080659 161080785 + 8.41512 NA Intergenic Intergenic -23898 NM_001282388 3694 Hs.470399 NM_000888 HPRD:00947 ITGB6 - integrin, beta 6 protein-coding 13-PTNLD9-TUMOR_peak_22918 chr18 32957258 32957378 + 8.41512 NA promoter-TSS (NM_145756) promoter-TSS (NM_145756) -17 NM_145756 252884 Hs.351005 NM_145756 HPRD:18334 ZNF396 ZSCAN14 zinc finger protein 396 protein-coding 13-PTNLD9-TUMOR_peak_48177 chr7 82653842 82654005 + 8.41512 NA intron (NM_033026, intron 3 of 24) L1PA3|LINE|L1 138274 NM_014510 27445 Hs.12376 NM_014510 HPRD:16078 PCLO ACZ piccolo presynaptic cytomatrix protein protein-coding 13-PTNLD9-TUMOR_peak_44655 chr6 33128720 33128983 + 8.41512 NA Intergenic Intergenic 31394 NM_080680 1302 Hs.390171 NM_080679 HPRD:00376 COL11A2 DFNA13|DFNB53|FBCG2|HKE5|PARP|STL3 collagen, type XI, alpha 2 protein-coding 13-PTNLD9-TUMOR_peak_48698 chr7 104203828 104204145 + 8.41512 NA intron (NM_199000, intron 1 of 2) L1PA2|LINE|L1 234882 NM_199000 375612 Hs.659164 NM_199000 LHFPL3 LHFPL4 lipoma HMGIC fusion partner-like 3 protein-coding 13-PTNLD9-TUMOR_peak_11336 chr11 117077793 117077954 + 8.41512 NA exon (NM_004716, exon 15 of 17) exon (NM_004716, exon 15 of 17) -5243 NR_045215 100652768 Hs.732365 NR_045215 LOC100652768 - uncharacterized LOC100652768 ncRNA 13-PTNLD9-TUMOR_peak_42665 chr5 150403401 150403574 + 8.41512 NA intron (NM_002084, intron 1 of 4) intron (NM_002084, intron 1 of 4) 3488 NM_002084 2878 Hs.386793 NM_002084 HPRD:11750 GPX3 GPx-P|GSHPx-3|GSHPx-P glutathione peroxidase 3 (plasma) protein-coding 13-PTNLD9-TUMOR_peak_32312 chr21 39812751 39812932 + 8.41512 NA intron (NM_001243429, intron 2 of 8) intron (NM_001243429, intron 2 of 8) 57587 NM_001136155 2078 Hs.473819 NM_004449 HPRD:01298 ERG erg-3|p55 v-ets avian erythroblastosis virus E26 oncogene homolog protein-coding 13-PTNLD9-TUMOR_peak_45139 chr6 44187108 44187464 + 8.41138 NA promoter-TSS (NM_004955) promoter-TSS (NM_004955) 44 NM_004955 2030 Hs.25450 NM_004955 HPRD:03724 SLC29A1 ENT1 solute carrier family 29 (equilibrative nucleoside transporter), member 1 protein-coding 13-PTNLD9-TUMOR_peak_1663 chr1 47645878 47646044 + 8.41138 NA TTS (NR_047498) TTS (NR_047498) 1039 NR_047498 100874253 Hs.435758 NR_047498 ENSG00000224805 LINC00853 PDZK1IP1-AS1|ncRNA-a4 long intergenic non-protein coding RNA 853 ncRNA 13-PTNLD9-TUMOR_peak_27754 chr2 97561345 97561622 + 8.40724 NA promoter-TSS (NM_001172667) promoter-TSS (NM_001172667) -584 NM_001172667 51252 Hs.107922 NM_016490 HPRD:14235 FAM178B - family with sequence similarity 178, member B protein-coding 13-PTNLD9-TUMOR_peak_50138 chr8 16314377 16314614 + 8.40724 NA Intergenic THE1D|LTR|ERVL-MaLR -264195 NM_138715 4481 Hs.147635 NM_002445 HPRD:01092 MSR1 CD204|SCARA1|SR-A|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_23310 chr18 56517632 56517736 + 8.40724 NA Intergenic Intergenic -12377 NM_018181 55205 Hs.529023 NM_018181 HPRD:11724 ZNF532 - zinc finger protein 532 protein-coding 13-PTNLD9-TUMOR_peak_52199 chr8 135056885 135057002 + 8.40724 NA Intergenic Intergenic 158204 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 13-PTNLD9-TUMOR_peak_39331 chr4 129493034 129493167 + 8.40724 NA Intergenic Intergenic -237678 NM_199320 79960 Hs.12420 NM_024900 HPRD:10151 JADE1 PHF17 jade family PHD finger 1 protein-coding 13-PTNLD9-TUMOR_peak_36307 chr3 148090452 148090568 + 8.40724 NA Intergenic LTR86B1|LTR|ERVL -325148 NM_009585 185 Hs.477887 NM_000685 HPRD:00107 AGTR1 AG2S|AGTR1B|AT1|AT1AR|AT1B|AT1BR|AT1R|AT2R1|HAT1R angiotensin II receptor, type 1 protein-coding 13-PTNLD9-TUMOR_peak_5448 chr1 221508547 221508659 + 8.40724 NA intron (NR_024236, intron 1 of 1) intron (NR_024236, intron 1 of 1) 1035 NR_024236 400804 Hs.722626 NR_024236 HPRD:17386 C1orf140 - uncharacterized LOC400804 ncRNA 13-PTNLD9-TUMOR_peak_23109 chr18 45720334 45720521 + 8.40724 NA Intergenic Intergenic -56747 NM_001039360 201501 Hs.515388 NM_001039360 ENSG00000184828 ZBTB7C APM-1|APM1|ZBTB36|ZNF857C zinc finger and BTB domain containing 7C protein-coding 13-PTNLD9-TUMOR_peak_2000 chr1 61789425 61789865 + 8.40724 NA intron (NM_001145511, intron 3 of 10) intron (NM_001145511, intron 3 of 10) -70455 NR_104180 645030 Hs.632410 NR_104180 NFIA-AS1 - NFIA antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_50649 chr8 38322898 38323033 + 8.40724 NA intron (NM_001174067, intron 1 of 18) intron (NM_001174067, intron 1 of 18) 2398 NM_001174067 2260 Hs.264887 NM_015850 HPRD:00634 FGFR1 BFGFR|CD331|CEK|FGFBR|FGFR-1|FLG|FLT-2|FLT2|HBGFR|HH2|HRTFDS|KAL2|N-SAM|OGD|bFGF-R-1 fibroblast growth factor receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_16694 chr14 105818634 105818922 + 8.40724 NA exon (NM_001100913, exon 3 of 25) exon (NM_001100913, exon 3 of 25) -36864 NM_001242787 2972 Hs.424484 NM_001519 HPRD:05361 BRF1 BRF|BRF-1|GTF3B|HEL-S-76p|TAF3B2|TAF3C|TAFIII90|TF3B90|TFIIIB90|hBRF BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit protein-coding 13-PTNLD9-TUMOR_peak_2757 chr1 109806372 109806510 + 8.40724 NA intron (NM_001408, intron 9 of 33) intron (NM_001408, intron 9 of 33) 13800 NM_001408 1952 Hs.57652 NM_001408 HPRD:05040 CELSR2 CDHF10|EGFL2|Flamingo1|MEGF3 cadherin, EGF LAG seven-pass G-type receptor 2 protein-coding 13-PTNLD9-TUMOR_peak_14285 chr12 127630937 127631213 + 8.40724 NA Intergenic CpG -86133 NR_104646 101927592 Hs.385663 NR_104646 ENSG00000249345 LOC101927592 - uncharacterized LOC101927592 ncRNA 13-PTNLD9-TUMOR_peak_34813 chr3 62553135 62553297 + 8.40724 NA intron (NM_183393, intron 9 of 26) intron (NM_183393, intron 9 of 26) -194026 NM_018008 55079 Hs.241523 NM_018008 HPRD:07596 FEZF2 FEZ|FEZL|TOF|ZFP312|ZNF312 FEZ family zinc finger 2 protein-coding 13-PTNLD9-TUMOR_peak_37151 chr3 188407216 188407340 + 8.40724 NA intron (NM_001167671, intron 6 of 10) L1MA6|LINE|L1 -120824 NR_046623 100873917 Hs.674993 NR_046623 LPP-AS1 - LPP antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_54403 chr9 112215772 112215898 + 8.40724 NA intron (NM_002829, intron 5 of 25) intron (NM_002829, intron 5 of 25) -2171 NM_001145370 5774 Hs.436429 NM_002829 HPRD:06767 PTPN3 PTP-H1|PTPH1 protein tyrosine phosphatase, non-receptor type 3 protein-coding 13-PTNLD9-TUMOR_peak_50014 chr8 7721685 7721817 + 8.40724 NA TTS (NM_001081552) TTS (NM_001081552) 16349 NM_058203 10407 Hs.2717 NM_016512 HPRD:07583 SPAG11B EDDM2B|EP2|EP2C|EP2D|HE2|HE2C|SPAG11 sperm associated antigen 11B protein-coding 13-PTNLD9-TUMOR_peak_34086 chr3 24187861 24188177 + 8.40724 NA intron (NM_001128176, intron 7 of 10) intron (NM_001128176, intron 7 of 10) -4796 NR_121667 101927854 Hs.570625 NR_121667 LOC101927854 - uncharacterized LOC101927854 ncRNA 13-PTNLD9-TUMOR_peak_14040 chr12 120773351 120773538 + 8.40724 NA Intergenic LTR13|LTR|ERVK -7852 NM_000928 5319 Hs.992 NM_000928 HPRD:01396 PLA2G1B PLA2|PLA2A|PPLA2 phospholipase A2, group IB (pancreas) protein-coding 13-PTNLD9-TUMOR_peak_6703 chr10 24717427 24717722 + 8.40724 NA intron (NM_001282767, intron 3 of 18) L2a|LINE|L2 -20788 NM_001282769 56243 Hs.445885 NM_019590 HPRD:11132 KIAA1217 SKT KIAA1217 protein-coding 13-PTNLD9-TUMOR_peak_13651 chr12 104755177 104755360 + 8.40724 NA Intergenic MER66A|LTR|ERV1 57758 NM_001008394 493861 Hs.659857 NM_001008394 HPRD:17415 EID3 NS4EB|NSE4B|NSMCE4B EP300 interacting inhibitor of differentiation 3 protein-coding 13-PTNLD9-TUMOR_peak_38786 chr4 85518712 85518902 + 8.40724 NA intron (NM_001263, intron 1 of 12) intron (NM_001263, intron 1 of 12) 14750 NM_001263 1040 Hs.654899 NM_001263 HPRD:11944 CDS1 CDS CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 1 protein-coding 13-PTNLD9-TUMOR_peak_54338 chr9 110130422 110130618 + 8.40724 NA Intergenic Intergenic 83470 NM_001244713 5887 Hs.521640 NM_002874 HPRD:06772 RAD23B HHR23B|HR23B|P58 RAD23 homolog B (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_14038 chr12 120740040 120740152 + 8.40724 NA promoter-TSS (NM_012240) promoter-TSS (NM_012240) -28 NM_012240 23409 Hs.50861 NM_012240 HPRD:06837 SIRT4 SIR2L4 sirtuin 4 protein-coding 13-PTNLD9-TUMOR_peak_440 chr1 11994545 11994829 + 8.40724 NA promoter-TSS (NM_000302) promoter-TSS (NM_000302) -37 NM_000302 5351 Hs.75093 NM_000302 HPRD:01086 PLOD1 EDS6|LH|LH1|LLH|PLOD procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 protein-coding 13-PTNLD9-TUMOR_peak_46019 chr6 125919635 125919767 + 8.40724 NA Intergenic L2c|LINE|L2 -75798 NR_038906 643623 Hs.520367 NR_038906 ENSG00000224506 LOC643623 - uncharacterized LOC643623 ncRNA 13-PTNLD9-TUMOR_peak_32138 chr21 33744325 33744596 + 8.40724 NA intron (NM_014825, intron 8 of 38) MIR|SINE|MIR 5171 NR_002996 677846 Hs.712293 NR_002996 SNORA80A ACA67|SNORA80 small nucleolar RNA, H/ACA box 80A snoRNA 13-PTNLD9-TUMOR_peak_16507 chr14 95957208 95957423 + 8.40724 NA Intergenic L2b|LINE|L2 -15142 NM_152592 161176 Hs.354645 NM_152592 HPRD:12652 SYNE3 C14orf49|NET53|Nesp3 spectrin repeat containing, nuclear envelope family member 3 protein-coding 13-PTNLD9-TUMOR_peak_56311 chrX 106243334 106243548 + 8.40724 NA promoter-TSS (NM_024657) promoter-TSS (NM_024657) 33 NM_024657 79710 Hs.496544 NM_024657 HPRD:06757 MORC4 ZCW4|ZCWCC2|dJ75H8.2 MORC family CW-type zinc finger 4 protein-coding 13-PTNLD9-TUMOR_peak_54562 chr9 117927125 117927328 + 8.40724 NA intron (NM_017418, intron 1 of 7) intron (NM_017418, intron 1 of 7) 23129 NM_017418 50514 Hs.148841 NM_017418 HPRD:16068 DEC1 CTS9 deleted in esophageal cancer 1 protein-coding 13-PTNLD9-TUMOR_peak_28958 chr2 165399174 165399299 + 8.40724 NA intron (NM_004490, intron 3 of 13) L1PA16|LINE|L1 79124 NM_004490 2888 Hs.411881 NM_004490 HPRD:03313 GRB14 - growth factor receptor-bound protein 14 protein-coding 13-PTNLD9-TUMOR_peak_36232 chr3 142314557 142314663 + 8.40360 NA promoter-TSS (NM_001145319) promoter-TSS (NM_001145319) -619 NM_001145319 5357 Hs.203637 NM_002670 HPRD:04110 PLS1 - plastin 1 protein-coding 13-PTNLD9-TUMOR_peak_30743 chr20 30308054 30308222 + 8.40360 NA intron (NM_001191, intron 2 of 2) intron (NM_001191, intron 2 of 2) 2518 NM_138578 598 Hs.516966 NM_001191 HPRD:02497 BCL2L1 BCL-XL/S|BCL2L|BCLX|BCLXL|BCLXS|Bcl-X|PPP1R52|bcl-xL|bcl-xS BCL2-like 1 protein-coding 13-PTNLD9-TUMOR_peak_24189 chr19 14607554 14607746 + 8.40082 NA promoter-TSS (NM_202470) promoter-TSS (NM_202470) -689 NM_202494 10755 Hs.655012 NM_005716 HPRD:05462 GIPC1 C19orf3|GIPC|GLUT1CBP|Hs.6454|IIP-1|NIP|RGS19IP1|SEMCAP|SYNECTIIN|SYNECTIN|TIP-2 GIPC PDZ domain containing family, member 1 protein-coding 13-PTNLD9-TUMOR_peak_36346 chr3 149257921 149258090 + 8.40009 NA intron (NM_015472, intron 4 of 6) intron (NM_015472, intron 4 of 6) 65637 NM_004617 7104 Hs.133527 NM_004617 TM4SF4 ILTMP|il-TMP transmembrane 4 L six family member 4 protein-coding 13-PTNLD9-TUMOR_peak_37964 chr4 9929114 9929423 + 8.40009 NA intron (NM_001001290, intron 7 of 12) intron (NM_001001290, intron 7 of 12) 93846 NM_020041 56606 Hs.656895 NM_020041 HPRD:05848 SLC2A9 GLUT9|GLUTX|UAQTL2|URATv1 solute carrier family 2 (facilitated glucose transporter), member 9 protein-coding 13-PTNLD9-TUMOR_peak_43954 chr6 16711876 16712017 + 8.40009 NA intron (NM_001128164, intron 2 of 7) AluJb|SINE|Alu 49775 NM_001128164 6310 Hs.434961 NM_000332 HPRD:03333 ATXN1 ATX1|D6S504E|SCA1 ataxin 1 protein-coding 13-PTNLD9-TUMOR_peak_8573 chr10 127379870 127380102 + 8.40009 NA intron (NR_033848, intron 2 of 4) intron (NR_033848, intron 2 of 4) 8174 NR_033848 283038 Hs.144911 NR_033848 ENSG00000228021 LOC283038 - uncharacterized LOC283038 ncRNA 13-PTNLD9-TUMOR_peak_32910 chr22 23548050 23548167 + 8.40009 NA intron (NM_004327, intron 1 of 22) intron (NM_004327, intron 1 of 22) 25556 NM_004327 613 Hs.517461 NM_004327 HPRD:01044 BCR ALL|BCR1|CML|D22S11|D22S662|PHL breakpoint cluster region protein-coding 13-PTNLD9-TUMOR_peak_14027 chr12 120668503 120668633 + 8.39509 NA intron (NM_001243756, intron 1 of 10) intron (NM_001243756, intron 1 of 10) 19396 NM_025157 5829 Hs.446336 NM_002859 ENSG00000089159 PXN - paxillin protein-coding 13-PTNLD9-TUMOR_peak_54026 chr9 95896848 95897022 + 8.38800 NA promoter-TSS (NM_004148) promoter-TSS (NM_004148) -365 NM_004148 4814 Hs.494457 NM_004148 HPRD:03639 NINJ1 NIN1|NINJURIN ninjurin 1 protein-coding 13-PTNLD9-TUMOR_peak_37658 chr4 3389749 3389962 + 8.38648 NA intron (NM_198227, intron 2 of 15) intron (NM_198227, intron 2 of 15) 18131 NM_198227 6002 Hs.527061 NM_002926 HPRD:03943 RGS12 - regulator of G-protein signaling 12 protein-coding 13-PTNLD9-TUMOR_peak_48404 chr7 97601435 97601694 + 8.38648 NA promoter-TSS (NR_002822) promoter-TSS (NR_002822) 74 NR_002822 389538 Hs.655977 NR_002822 MGC72080 - MGC72080 pseudogene pseudo 13-PTNLD9-TUMOR_peak_7162 chr10 43918177 43918495 + 8.38648 NA Intergenic SVA_E|Other|Other -13640 NM_001098204 3185 Hs.808 NM_004966 HPRD:03023 HNRNPF HNRPF|OK/SW-cl.23|mcs94-1 heterogeneous nuclear ribonucleoprotein F protein-coding 13-PTNLD9-TUMOR_peak_21200 chr17 43192030 43192179 + 8.38648 NA promoter-TSS (NR_106842) promoter-TSS (NR_106842) -303 NR_106842 102465470 NR_106842 MIR6784 hsa-mir-6784 microRNA 6784 ncRNA 13-PTNLD9-TUMOR_peak_46681 chr7 1506487 1506662 + 8.38648 NA Intergenic Intergenic -7465 NM_182924 79778 Hs.376617 NM_024723 HPRD:11364 MICALL2 JRAB|MICAL-L2 MICAL-like 2 protein-coding 13-PTNLD9-TUMOR_peak_21979 chr17 73236893 73237040 + 8.38648 NA exon (NM_001172703, exon 11 of 17) exon (NM_001172703, exon 11 of 17) 20776 NM_014001 23163 Hs.87726 NM_014001 HPRD:10443 GGA3 - golgi-associated, gamma adaptin ear containing, ARF binding protein 3 protein-coding 13-PTNLD9-TUMOR_peak_50638 chr8 38088744 38088886 + 8.38648 NA promoter-TSS (NM_001164232) promoter-TSS (NM_001164232) -194 NM_015214 23259 Hs.434966 NM_015214 HPRD:16788 DDHD2 SAMWD1|SPG54|iPLA(1)gamma DDHD domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_22653 chr18 12991596 12991711 + 8.38648 NA intron (NM_032142, intron 1 of 44) CpG 292 NM_032142 55125 Hs.100914 NM_018069 HPRD:10855 CEP192 PPP1R62 centrosomal protein 192kDa protein-coding 13-PTNLD9-TUMOR_peak_49370 chr7 140026183 140026311 + 8.38294 NA Intergenic Intergenic 72103 NM_001287498 84255 Hs.446021 NM_032295 HPRD:15381 SLC37A3 - solute carrier family 37, member 3 protein-coding 13-PTNLD9-TUMOR_peak_12550 chr12 38538586 38538723 + 8.38294 NA Intergenic LTR14C|LTR|ERVK -171903 NM_001013620 144245 Hs.259305 NM_001013620 ALG10B ALG10|KCR1 ALG10B, alpha-1,2-glucosyltransferase protein-coding 13-PTNLD9-TUMOR_peak_38093 chr4 23374771 23375181 + 8.38294 NA intron (NR_039674, intron 1 of 2) intron (NR_039674, intron 1 of 2) 89750 NR_039674 100616252 NR_039674 miRBase:MI0016815 MIR548AJ2 - microRNA 548aj-2 ncRNA 13-PTNLD9-TUMOR_peak_36185 chr3 140999035 140999175 + 8.38294 NA intron (NM_152282, intron 6 of 7) intron (NM_152282, intron 6 of 7) -43950 NM_001080412 253461 Hs.518301 NM_152535 ENSG00000177311 ZBTB38 CIBZ|PPP1R171|ZNF921 zinc finger and BTB domain containing 38 protein-coding 13-PTNLD9-TUMOR_peak_32686 chr22 18514582 18514700 + 8.38294 NA intron (NR_024417, intron 1 of 1) intron (NR_024417, intron 1 of 1) 2490 NR_024417 100192420 Hs.589947 NR_024417 ENSG00000235295 FLJ41941 - uncharacterized LOC100192420 ncRNA 13-PTNLD9-TUMOR_peak_46223 chr6 146867694 146867888 + 8.38294 NA intron (NM_006834, intron 1 of 2) intron (NM_006834, intron 1 of 2) 2963 NM_006834 10981 Hs.287714 NM_006834 HPRD:06700 RAB32 - RAB32, member RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_48405 chr7 97604721 97604845 + 8.38294 NA Intergenic Intergenic -3145 NR_002822 389538 Hs.655977 NR_002822 MGC72080 - MGC72080 pseudogene pseudo 13-PTNLD9-TUMOR_peak_36995 chr3 184369904 184370101 + 8.38130 NA Intergenic Intergenic 59834 NM_022149 64110 Hs.306123 NM_022149 HPRD:14348 MAGEF1 - melanoma antigen family F, 1 protein-coding 13-PTNLD9-TUMOR_peak_28809 chr2 157292394 157292562 + 8.37806 NA promoter-TSS (NM_000408) promoter-TSS (NM_000408) -422 NM_000408 2820 Hs.512382 NM_000408 HPRD:00715 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 (mitochondrial) protein-coding 13-PTNLD9-TUMOR_peak_46186 chr6 143267442 143267805 + 8.37806 NA Intergenic CpG-22589 -1285 NM_006734 3097 Hs.510172 NM_006734 HPRD:00881 HIVEP2 HIV-EP2|MBP-2|MIBP1|SHN2|ZAS2|ZNF40B human immunodeficiency virus type I enhancer binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_23721 chr19 4379463 4379628 + 8.37616 NA intron (NM_001199944, intron 1 of 9) intron (NM_001199944, intron 1 of 9) 20870 NM_001199944 6455 Hs.97616 NM_003025 HPRD:03462 SH3GL1 CNSA1|EEN|SH3D2B|SH3P8 SH3-domain GRB2-like 1 protein-coding 13-PTNLD9-TUMOR_peak_51237 chr8 86574595 86574838 + 8.37336 NA promoter-TSS (NR_003594).2 promoter-TSS (NR_003594).2 26 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene) pseudo 13-PTNLD9-TUMOR_peak_23320 chr18 56975874 56976036 + 8.36749 NA intron (NM_181654, intron 2 of 2) CpG 9926 NM_181654 339302 Hs.449884 NM_181654 HPRD:13091 CPLX4 CPX-IV|CPXIV complexin 4 protein-coding 13-PTNLD9-TUMOR_peak_31013 chr20 37671263 37671535 + 8.36749 NA Intergenic Intergenic 80418 NM_021931 60625 Hs.444520 NM_021931 HPRD:13145 DHX35 C20orf15|DDX35|KAIA0875 DEAH (Asp-Glu-Ala-His) box polypeptide 35 protein-coding 13-PTNLD9-TUMOR_peak_36908 chr3 181930381 181930560 + 8.36749 NA Intergenic Intergenic 260318 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 13-PTNLD9-TUMOR_peak_2809 chr1 110693056 110693329 + 8.36749 NA promoter-TSS (NM_001010898) promoter-TSS (NM_001010898) 60 NM_001010898 388662 Hs.128382 NM_001010898 HPRD:18061 SLC6A17 NTT4 solute carrier family 6 (neutral amino acid transporter), member 17 protein-coding 13-PTNLD9-TUMOR_peak_50005 chr8 7304778 7304910 + 8.36749 NA TTS (NM_058202) TTS (NM_058202) 5043 NM_058207 10407 Hs.2717 NM_016512 HPRD:07583 SPAG11B EDDM2B|EP2|EP2C|EP2D|HE2|HE2C|SPAG11 sperm associated antigen 11B protein-coding 13-PTNLD9-TUMOR_peak_11418 chr11 119999482 119999694 + 8.36749 NA intron (NM_012101, intron 1 of 8) (CAGCC)n|Simple_repeat|Simple_repeat 9275 NM_012101 23650 Hs.504115 NM_012101 HPRD:10280 TRIM29 ATDC tripartite motif containing 29 protein-coding 13-PTNLD9-TUMOR_peak_31487 chr20 49982773 49982907 + 8.36749 NA Intergenic Intergenic 86674 NR_036162 100422889 NR_036162 MIR3194 - microRNA 3194 ncRNA 13-PTNLD9-TUMOR_peak_46851 chr7 6943134 6943263 + 8.36749 NA Intergenic Intergenic -77272 NM_198097 221960 Hs.567779 NM_198097 HPRD:12916 CCZ1B C7orf28B|H_NH0577018.2 CCZ1 vacuolar protein trafficking and biogenesis associated homolog B (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_47384 chr7 45007222 45007323 + 8.36749 NA exon (NM_033054, exon 14 of 22) exon (NM_033054, exon 14 of 22) 11432 NM_033054 64005 Hs.37617 NM_033054 HPRD:17622 MYO1G HA2|HLA-HA2|MHAG myosin IG protein-coding 13-PTNLD9-TUMOR_peak_26290 chr2 23436005 23436414 + 8.36749 NA Intergenic MIR3|SINE|MIR -172089 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch-like family member 29 protein-coding 13-PTNLD9-TUMOR_peak_31804 chr20 62089218 62089373 + 8.36749 NA intron (NM_172107, intron 1 of 16) intron (NM_172107, intron 1 of 16) 14698 NM_004518 3785 Hs.161851 NM_004518 HPRD:03757 KCNQ2 BFNC|BFNS1|EBN|EBN1|EIEE7|ENB1|HNSPC|KCNA11|KV7.2|KVEBN1 potassium voltage-gated channel, KQT-like subfamily, member 2 protein-coding 13-PTNLD9-TUMOR_peak_921 chr1 31181072 31181166 + 8.36749 NA Intergenic Intergenic -10500 NR_034182 100129196 Hs.659751 NR_034182 ENSG00000186056 MATN1-AS1 - MATN1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_28937 chr2 163589572 163589745 + 8.36749 NA intron (NM_033272, intron 2 of 15) intron (NM_033272, intron 2 of 15) -35788 NR_110258 101929570 Hs.470445 NR_110258 ENSG00000237750 LOC101929570 - uncharacterized LOC101929570 ncRNA 13-PTNLD9-TUMOR_peak_1776 chr1 52499379 52499516 + 8.36749 NA promoter-TSS (NM_138417) promoter-TSS (NM_138417) 25 NM_138417 112970 Hs.476033 NM_138417 HPRD:14471 KTI12 SBBI81|TOT4 KTI12 homolog, chromatin associated (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_18322 chr16 3355134 3355256 + 8.36749 NA promoter-TSS (NM_153028) promoter-TSS (NM_153028) -238 NM_153028 7627 Hs.513292 NM_153028 HPRD:03278 ZNF75A - zinc finger protein 75a protein-coding 13-PTNLD9-TUMOR_peak_47168 chr7 30509018 30509229 + 8.36749 NA intron (NM_006092, intron 1 of 13) intron (NM_006092, intron 1 of 13) 9270 NM_006092 10392 Hs.405153 NM_006092 HPRD:05815 NOD1 CARD4|CLR7.1|NLRC1 nucleotide-binding oligomerization domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_36330 chr3 149083880 149084009 + 8.36718 NA Intergenic Intergenic -11621 NR_109810 100874091 Hs.549633 NR_046650 TM4SF1-AS1 - TM4SF1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_18401 chr16 4995675 4995966 + 8.36447 NA Intergenic Intergenic -8684 NM_002705 5493 Hs.192233 NM_002705 HPRD:04187 PPL - periplakin protein-coding 13-PTNLD9-TUMOR_peak_23167 chr18 47670362 47670484 + 8.36406 NA intron (NM_001080467, intron 1 of 39) intron (NM_001080467, intron 1 of 39) -17490 NR_036204 100422865 NR_036204 MIR4320 - microRNA 4320 ncRNA 13-PTNLD9-TUMOR_peak_54872 chr9 131654699 131654929 + 8.36406 NA intron (NM_001127244, intron 2 of 3) intron (NM_001127244, intron 2 of 3) 10033 NM_001127244 56262 Hs.643600 NM_019594 ENSG00000136802 LRRC8A AGM5|LRRC8 leucine rich repeat containing 8 family, member A protein-coding 13-PTNLD9-TUMOR_peak_25121 chr19 45311508 45311668 + 8.36406 NA promoter-TSS (NM_005581) promoter-TSS (NM_005581) -728 NM_005581 4059 Hs.625725 NM_005581 HPRD:00197 BCAM AU|CD239|LU|MSK19 basal cell adhesion molecule (Lutheran blood group) protein-coding 13-PTNLD9-TUMOR_peak_31202 chr20 44451623 44451756 + 8.36406 NA TTS (NM_003279) TTS (NM_003279) 4264 NM_003279 7125 Hs.182421 NM_003279 HPRD:08929 TNNC2 - troponin C type 2 (fast) protein-coding 13-PTNLD9-TUMOR_peak_46445 chr6 160114425 160114715 + 8.36406 NA promoter-TSS (NM_000636) promoter-TSS (NM_000636) -217 NM_000636 6648 Hs.487046 NM_000636 HPRD:00938 SOD2 IPOB|MNSOD|MVCD6 superoxide dismutase 2, mitochondrial protein-coding 13-PTNLD9-TUMOR_peak_40614 chr5 36459317 36459747 + 8.36266 NA Intergenic Intergenic -146925 NM_001166696 6507 Hs.481918 NM_004172 HPRD:02523 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 (glial high affinity glutamate transporter), member 3 protein-coding 13-PTNLD9-TUMOR_peak_1315 chr1 41094627 41094877 + 8.36266 NA intron (NM_014747, intron 6 of 7) intron (NM_014747, intron 6 of 7) 36572 NM_014747 9783 Hs.654808 NM_014747 HPRD:17976 RIMS3 NIM3|RIM3 regulating synaptic membrane exocytosis 3 protein-coding 13-PTNLD9-TUMOR_peak_33901 chr3 14668644 14668819 + 8.36266 NA Intergenic Intergenic -24522 NM_016474 51244 Hs.517820 NM_016474 HPRD:12820 CCDC174 C3orf19 coiled-coil domain containing 174 protein-coding 13-PTNLD9-TUMOR_peak_27236 chr2 71277214 71277319 + 8.36266 NA Intergenic HERVE-int|LTR|ERV1 -18142 NM_017567 55577 Hs.7036 NM_017567 HPRD:08441 NAGK GNK|HSA242910 N-acetylglucosamine kinase protein-coding 13-PTNLD9-TUMOR_peak_30607 chr20 23168520 23168681 + 8.36266 NA Intergenic Intergenic -55327 NR_034149 200261 Hs.352228 NM_182535 HPRD:14124 LINC00656 - long intergenic non-protein coding RNA 656 ncRNA 13-PTNLD9-TUMOR_peak_44968 chr6 41286533 41286815 + 8.36266 NA Intergenic Intergenic -16854 NM_004828 9436 Hs.194721 NM_004828 HPRD:05168 NCR2 CD336|LY95|NK-p44|NKP44|dJ149M18.1 natural cytotoxicity triggering receptor 2 protein-coding 13-PTNLD9-TUMOR_peak_34319 chr3 40665173 40665377 + 8.36266 NA Intergenic Intergenic 98906 NM_001098414 285268 Hs.19977 NM_198484 ZNF621 - zinc finger protein 621 protein-coding 13-PTNLD9-TUMOR_peak_36912 chr3 182457071 182457195 + 8.36266 NA Intergenic Intergenic -54158 NM_014616 23200 Hs.478429 NM_014616 HPRD:10432 ATP11B ATPIF|ATPIR ATPase, class VI, type 11B protein-coding 13-PTNLD9-TUMOR_peak_15166 chr13 114540777 114540893 + 8.36266 NA intron (NM_000820, intron 6 of 14) intron (NM_000820, intron 6 of 14) -1818 NM_001143945 2621 Hs.646346 NM_000820 HPRD:02705 GAS6 AXLLG|AXSF growth arrest-specific 6 protein-coding 13-PTNLD9-TUMOR_peak_4510 chr1 177169555 177169692 + 8.36266 NA intron (NM_021165, intron 1 of 7) L2a|LINE|L2 28990 NM_021165 57795 Hs.495918 NM_021165 HPRD:13891 BRINP2 DBCCR1L2|FAM5B bone morphogenetic protein/retinoic acid inducible neural-specific 2 protein-coding 13-PTNLD9-TUMOR_peak_36686 chr3 170064692 170064844 + 8.36266 NA Intergenic MLT1M|LTR|ERVL-MaLR -10705 NM_001145098 6498 Hs.536655 NM_005414 HPRD:01319 SKIL SNO|SnoA|SnoI|SnoN SKI-like proto-oncogene protein-coding 13-PTNLD9-TUMOR_peak_28294 chr2 121639909 121640167 + 8.36266 NA intron (NM_005270, intron 1 of 12) intron (NM_005270, intron 1 of 12) 85171 NM_005270 2736 Hs.111867 NM_005270 HPRD:01312 GLI2 HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 13-PTNLD9-TUMOR_peak_33773 chr3 11427478 11427607 + 8.36266 NA intron (NM_001144912, intron 16 of 16) MIR3|SINE|MIR 113532 NM_001144912 10533 Hs.38032 NM_006395 HPRD:12293 ATG7 APG7-LIKE|APG7L|GSA7 autophagy related 7 protein-coding 13-PTNLD9-TUMOR_peak_8235 chr10 104536937 104537037 + 8.36266 NA intron (NM_017787, intron 1 of 3) intron (NM_017787, intron 1 of 3) 1099 NM_017787 54838 Hs.500897 NM_017787 HPRD:12567 WBP1L C10orf26|OPA1L|OPAL1 WW domain binding protein 1-like protein-coding 13-PTNLD9-TUMOR_peak_12225 chr12 14707305 14707585 + 8.36266 NA intron (NM_024829, intron 1 of 10) L2b|LINE|L2 -13221 NR_120465 101928290 Hs.131933 NR_120465 ENSG00000256751 PLBD1-AS1 - PLBD1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_37734 chr4 5039766 5040240 + 8.36266 NA Intergenic L2c|LINE|L2 -13524 NM_018401 55351 Hs.133062 NM_018401 HPRD:15446 STK32B HSA250839|STK32|STKG6|YANK2 serine/threonine kinase 32B protein-coding 13-PTNLD9-TUMOR_peak_33564 chr3 3804891 3805049 + 8.36266 NA Intergenic AluYc|SINE|Alu -36151 NM_020873 57633 Hs.163244 NM_020873 HPRD:14320 LRRN1 FIGLER3|NLRR-1 leucine rich repeat neuronal 1 protein-coding 13-PTNLD9-TUMOR_peak_32666 chr22 18155914 18156185 + 8.36266 NA intron (NR_073068, intron 2 of 4) intron (NR_073068, intron 2 of 4) 17621 NR_073068 23786 Hs.631672 NM_015367 HPRD:09822 BCL2L13 BCL-RAMBO|Bcl2-L-13|MIL1 BCL2-like 13 (apoptosis facilitator) protein-coding 13-PTNLD9-TUMOR_peak_38662 chr4 78656217 78656385 + 8.36266 NA intron (NM_001286790, intron 8 of 11) LTR16A|LTR|ERVL 84243 NM_001286790 246175 Hs.592519 NM_144571 HPRD:10841 CNOT6L CCR4b CCR4-NOT transcription complex, subunit 6-like protein-coding 13-PTNLD9-TUMOR_peak_1064 chr1 35208323 35208495 + 8.36266 NA Intergenic Intergenic -12239 NM_005268 2709 Hs.198249 NM_005268 HPRD:06840 GJB5 CX31.1 gap junction protein, beta 5, 31.1kDa protein-coding 13-PTNLD9-TUMOR_peak_27704 chr2 96394757 96394908 + 8.36266 NA Intergenic Intergenic 97897 NR_103734 150759 Hs.503463 NR_103734 LINC00342 NCRNA00342 long intergenic non-protein coding RNA 342 ncRNA 13-PTNLD9-TUMOR_peak_26899 chr2 48942434 48942667 + 8.36266 NA intron (NM_000233, intron 6 of 10) LTR86A2|LTR|ERVL 40330 NM_000233 3973 Hs.468490 NM_000233 HPRD:01073 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 13-PTNLD9-TUMOR_peak_14769 chr13 50759778 50759972 + 8.35960 NA intron (NR_109974, intron 2 of 6) L1PA2|LINE|L1 13721 NR_002183 145165 Hs.511834 NM_153290 ST13P4 FAM10A4|FAM10A4P suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 4 pseudo 13-PTNLD9-TUMOR_peak_36803 chr3 177012996 177013199 + 8.35960 NA intron (NR_047465, intron 1 of 1) intron (NR_047465, intron 1 of 1) 867 NR_047465 100820709 Hs.518409 NR_047465 LINC00501 - long intergenic non-protein coding RNA 501 ncRNA 13-PTNLD9-TUMOR_peak_95 chr1 1623918 1624270 + 8.35954 NA 5' UTR (NM_001110781, exon 1 of 9) 5' UTR (NM_001110781, exon 1 of 9) 149 NM_001290264 728661 Hs.655255 NM_001110781 ENSG00000189339 SLC35E2B SLC35E2 solute carrier family 35, member E2B protein-coding 13-PTNLD9-TUMOR_peak_49454 chr7 142531285 142531386 + 8.35745 NA Intergenic Intergenic -21441 NM_001280794 2051 Hs.380089 NM_004445 HPRD:04133 EPHB6 HEP EPH receptor B6 protein-coding 13-PTNLD9-TUMOR_peak_13737 chr12 108696315 108696456 + 8.35745 NA intron (NM_001142344, intron 1 of 2) intron (NM_001142344, intron 1 of 2) 18054 NM_001142345 1240 Hs.197143 NM_004072 HPRD:03829 CMKLR1 CHEMERINR|ChemR23|DEZ|RVER1 chemokine-like receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_48524 chr7 100168982 100169111 + 8.35745 NA TTS (NM_001168682) TTS (NM_001168682) 2224 NM_001168682 100316904 Hs.633863 NM_001168682 ENSG00000205307 SAP25 - Sin3A-associated protein, 25kDa protein-coding 13-PTNLD9-TUMOR_peak_34463 chr3 47426581 47426827 + 8.35323 NA intron (NM_015466, intron 1 of 24) intron (NM_015466, intron 1 of 24) 4213 NM_015466 25930 Hs.25524 NM_015466 HPRD:05959 PTPN23 HD-PTP|HDPTP|PTP-TD14 protein tyrosine phosphatase, non-receptor type 23 protein-coding 13-PTNLD9-TUMOR_peak_54477 chr9 115818989 115819168 + 8.35323 NA promoter-TSS (NM_001282518) promoter-TSS (NM_001282518) -7 NM_001282515 7539 Hs.150406 NM_003408 HPRD:04258 ZFP37 ZNF906|zfp-37 ZFP37 zinc finger protein protein-coding 13-PTNLD9-TUMOR_peak_19594 chr16 67564044 67564225 + 8.35109 NA intron (NM_001193523, intron 1 of 21) CpG 594 NM_001193523 79567 Hs.152717 NM_024519 HPRD:08586 FAM65A - family with sequence similarity 65, member A protein-coding 13-PTNLD9-TUMOR_peak_31291 chr20 46369558 46369724 + 8.35109 NA intron (NM_198596, intron 2 of 20) L2a|LINE|L2 45167 NM_018837 55959 Hs.162016 NM_018837 HPRD:18130 SULF2 HSULF-2 sulfatase 2 protein-coding 13-PTNLD9-TUMOR_peak_45779 chr6 97345275 97345456 + 8.35109 NA intron (NM_014165, intron 1 of 2) CpG 402 NM_014165 29078 Hs.512144 NM_014165 HPRD:10795 NDUFAF4 C6orf66|HRPAP20|My013|bA22L21.1 NADH dehydrogenase (ubiquinone) complex I, assembly factor 4 protein-coding 13-PTNLD9-TUMOR_peak_52915 chr9 22084746 22085017 + 8.35109 NA intron (NR_003529, intron 12 of 18) intron (NR_003529, intron 12 of 18) -75569 NM_078487 1030 Hs.72901 NM_004936 HPRD:02696 CDKN2B CDK4I|INK4B|MTS2|P15|TP15|p15INK4b cyclin-dependent kinase inhibitor 2B (p15, inhibits CDK4) protein-coding 13-PTNLD9-TUMOR_peak_7717 chr10 73841731 73842021 + 8.35109 NA intron (NM_001244950, intron 1 of 10) intron (NM_001244950, intron 1 of 10) 6655 NM_001244950 9806 Hs.523009 NM_014767 HPRD:12146 SPOCK2 testican-2 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2 protein-coding 13-PTNLD9-TUMOR_peak_31673 chr20 56020463 56020610 + 8.35109 NA Intergenic Intergenic 54082 NM_001291780 55544 Hs.236361 NM_017495 HPRD:15268 RBM38 HSRNASEB|RNPC1|SEB4B|SEB4D|dJ800J21.2 RNA binding motif protein 38 protein-coding 13-PTNLD9-TUMOR_peak_1866 chr1 55267226 55267349 + 8.35109 NA promoter-TSS (NM_017904) promoter-TSS (NM_017904) -346 NM_017904 55001 Hs.16230 NM_017904 HPRD:07932 TTC22 - tetratricopeptide repeat domain 22 protein-coding 13-PTNLD9-TUMOR_peak_37060 chr3 186314798 186314987 + 8.34952 NA Intergenic Intergenic -15958 NM_001622 197 Hs.324746 NM_001622 HPRD:00727 AHSG A2HS|AHS|FETUA|HSGA alpha-2-HS-glycoprotein protein-coding 13-PTNLD9-TUMOR_peak_9939 chr11 59324921 59325075 + 8.34952 NA Intergenic tRNA-Phe-TTY|tRNA|tRNA 37633 NR_036120 100422880 NR_036120 MIR3162 - microRNA 3162 ncRNA 13-PTNLD9-TUMOR_peak_29322 chr2 189157383 189157550 + 8.34952 NA promoter-TSS (NR_045563) promoter-TSS (NR_045563) 76 NR_045562 51454 Hs.470887 NM_016315 GULP1 CED-6|CED6|GULP GULP, engulfment adaptor PTB domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_46611 chr7 18617 18783 + 8.34302 NA Intergenic MER21C|LTR|ERVL -131018 NR_108065 100507642 Hs.557780 NR_108064 LOC100507642 - uncharacterized LOC100507642 ncRNA 13-PTNLD9-TUMOR_peak_5000 chr1 201987623 201988015 + 8.33854 NA Intergenic Intergenic 8129 NM_001114309 1999 Hs.603657 NM_004433 HPRD:03722 ELF3 EPR-1|ERT|ESE-1|ESX E74-like factor 3 (ets domain transcription factor, epithelial-specific ) protein-coding 13-PTNLD9-TUMOR_peak_10174 chr11 64614722 64614861 + 8.33733 NA Intergenic Intergenic -2750 NM_017525 55561 Hs.293590 NM_017525 HPRD:13013 CDC42BPG DMPK2|HSMDPKIN|KAPPA-200|MRCKG|MRCKgamma CDC42 binding protein kinase gamma (DMPK-like) protein-coding 13-PTNLD9-TUMOR_peak_1427 chr1 43408986 43409161 + 8.33733 NA intron (NM_006516, intron 1 of 9) intron (NM_006516, intron 1 of 9) -15647 NR_033967 440584 Hs.260928 NR_033967 ENSG00000227533 SLC2A1-AS1 - SLC2A1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_25898 chr1_gl000192_random 511036 511240 + 8.33421 NA Intergenic Intergenic -42455 NR_120328 102724558 Hs.712738 NR_120328 LOC102724558 - uncharacterized LOC102724558 ncRNA 13-PTNLD9-TUMOR_peak_31881 chr21 10774333 10774467 + 8.33034 NA Intergenic (GAATG)n|Satellite|Satellite 216543 NM_001290224 7179 Hs.122986 NM_199259 HPRD:05064 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 13-PTNLD9-TUMOR_peak_9533 chr11 35133220 35133355 + 8.32824 NA Intergenic Intergenic 26292 NR_120528 100507144 Hs.673491 NR_120528 ENSG00000255521 LOC100507144 - uncharacterized LOC100507144 ncRNA 13-PTNLD9-TUMOR_peak_34241 chr3 36421817 36422030 + 8.32824 NA promoter-TSS (NM_001292049) promoter-TSS (NM_001292049) -56 NM_001292049 6769 Hs.56045 NM_003149 HPRD:11890 STAC STAC1 SH3 and cysteine rich domain protein-coding 13-PTNLD9-TUMOR_peak_25627 chr19 54540378 54540510 + 8.32824 NA Intergenic LTR13A|LTR|ERVK 26763 NM_198481 284415 Hs.444431 NM_198481 HPRD:15615 VSTM1 SIRL-1|SIRL1|UNQ3033 V-set and transmembrane domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_35241 chr3 106694393 106694509 + 8.32824 NA Intergenic L1PA2|LINE|L1 265034 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 13-PTNLD9-TUMOR_peak_41928 chr5 125797987 125798102 + 8.32824 NA intron (NM_001146320, intron 1 of 12) intron (NM_001146320, intron 1 of 12) -2743 NM_001146322 65983 Hs.363558 NM_023927 HPRD:11402 GRAMD3 NS3TP2 GRAM domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_5821 chr1 231531570 231531723 + 8.32824 NA intron (NM_022051, intron 1 of 4) L2|LINE|L2 29144 NM_022051 54583 Hs.444450 NM_022051 HPRD:06971 EGLN1 C1orf12|ECYT3|HIF-PH2|HIFPH2|HPH-2|HPH2|PHD2|SM20|ZMYND6 egl-9 family hypoxia-inducible factor 1 protein-coding 13-PTNLD9-TUMOR_peak_20785 chr17 27717201 27717349 + 8.32824 NA promoter-TSS (NM_025142) promoter-TSS (NM_025142) -405 NR_039749 100616122 NR_039749 miRBase:MI0016890 MIR4523 - microRNA 4523 ncRNA 13-PTNLD9-TUMOR_peak_8523 chr10 124739836 124740163 + 8.32824 NA exon (NM_153336, exon 1 of 7) exon (NM_153336, exon 1 of 7) 443 NM_153336 118672 Hs.281004 NM_153336 HPRD:16586 PSTK C10orf89 phosphoseryl-tRNA kinase protein-coding 13-PTNLD9-TUMOR_peak_45626 chr6 84512947 84513462 + 8.32824 NA Intergenic L1PA2|LINE|L1 -49781 NM_001009994 134701 Hs.149454 NM_001009994 HPRD:16658 RIPPLY2 C6orf159|dJ237I15.1 ripply transcriptional repressor 2 protein-coding 13-PTNLD9-TUMOR_peak_53891 chr9 90326829 90327076 + 8.32824 NA Intergenic Intergenic -14022 NM_001912 1514 Hs.731507 NM_001912 HPRD:00293 CTSL CATL|CTSL1|MEP cathepsin L protein-coding 13-PTNLD9-TUMOR_peak_48024 chr7 75716750 75717095 + 8.32824 NA Intergenic L1MC|LINE|L1 39585 NM_005918 4191 Hs.520967 NM_005918 HPRD:01099 MDH2 M-MDH|MDH|MGC:3559|MOR1 malate dehydrogenase 2, NAD (mitochondrial) protein-coding 13-PTNLD9-TUMOR_peak_11696 chr11 131365398 131365580 + 8.32824 NA intron (NM_001048209, intron 1 of 7) intron (NM_001048209, intron 1 of 7) 45272 NR_110140 101929653 Hs.559159 NR_110140 ENSG00000237654 LOC101929653 - uncharacterized LOC101929653 ncRNA 13-PTNLD9-TUMOR_peak_36734 chr3 171866614 171866718 + 8.32824 NA intron (NM_001135095, intron 3 of 25) intron (NM_001135095, intron 3 of 25) 108322 NM_001135095 64778 Hs.744888 NM_022763 HPRD:10943 FNDC3B FAD104|PRO4979|YVTM2421 fibronectin type III domain containing 3B protein-coding 13-PTNLD9-TUMOR_peak_5830 chr1 231911883 231912037 + 8.32824 NA intron (NM_001164546, intron 6 of 6) intron (NM_001164546, intron 6 of 6) 42303 NR_002227 27184 Hs.720568 NR_002227 DISC2 DISC1-AS1|DISC1OS|NCRNA00015 disrupted in schizophrenia 2 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_4717 chr1 183644705 183644827 + 8.32824 NA intron (NM_015149, intron 1 of 18) L3|LINE|CR1 -22318 NM_203454 403314 Hs.97335 NM_203454 HPRD:17522 APOBEC4 C1orf169 apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative) protein-coding 13-PTNLD9-TUMOR_peak_35426 chr3 113812549 113812752 + 8.32824 NA Intergenic Intergenic 37068 NM_024638 79691 Hs.477162 NM_024638 HPRD:17944 QTRTD1 - queuine tRNA-ribosyltransferase domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_18855 chr16 27472816 27473057 + 8.32824 NA intron (NM_001286242, intron 36 of 36) L2c|LINE|L2 -8222 NR_037158 283888 Hs.660935 NR_037158 ENSG00000259954 IL21R-AS1 - IL21R antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_19735 chr16 72661638 72661732 + 8.32824 NA Intergenic L1PA2|LINE|L1 420589 NM_006885 463 Hs.598297 NM_006885 HPRD:00075 ZFHX3 ATBF1|ATBT|ZNF927 zinc finger homeobox 3 protein-coding 13-PTNLD9-TUMOR_peak_41846 chr5 119793820 119793941 + 8.32824 NA Intergenic LTR13|LTR|ERVK -6093 NM_016644 51334 Hs.157461 NM_016644 HPRD:14239 PRR16 DSC54|LARGEN proline rich 16 protein-coding 13-PTNLD9-TUMOR_peak_2655 chr1 101124040 101124447 + 8.32824 NA Intergenic L2c|LINE|L2 -11683 NR_038914 100128787 Hs.536050 NR_038914 LINC01349 - long intergenic non-protein coding RNA 1349 ncRNA 13-PTNLD9-TUMOR_peak_6459 chr10 11206808 11206960 + 8.32824 NA promoter-TSS (NM_001083591) promoter-TSS (NM_001083591) -109 NM_001025076 10659 Hs.309288 NM_006561 HPRD:03964 CELF2 BRUNOL3|CUGBP2|ETR-3|ETR3|NAPOR CUGBP, Elav-like family member 2 protein-coding 13-PTNLD9-TUMOR_peak_28210 chr2 119558770 119558868 + 8.32824 NA Intergenic Intergenic 46940 NM_001426 2019 Hs.271977 NM_001426 HPRD:08835 EN1 - engrailed homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_32143 chr21 33815036 33815197 + 8.32824 NA intron (NR_104472, intron 1 of 6) intron (NR_104472, intron 1 of 6) 30371 NR_104472 59271 Hs.208358 NM_058187 HPRD:10760 EVA1C B18|B19|C21orf63|C21orf64|FAM176C|SUE21 eva-1 homolog C (C. elegans) protein-coding 13-PTNLD9-TUMOR_peak_12493 chr12 33740833 33741327 + 8.32824 NA Intergenic LTR73|LTR|ERV1 -148326 NM_198992 341359 Hs.118703 NM_198992 SYT10 - synaptotagmin X protein-coding 13-PTNLD9-TUMOR_peak_12615 chr12 44230012 44230379 + 8.32824 NA intron (NM_001286211, intron 1 of 6) intron (NM_001286211, intron 1 of 6) 531 NM_001286213 84216 Hs.444668 NM_032256 HPRD:13193 TMEM117 - transmembrane protein 117 protein-coding 13-PTNLD9-TUMOR_peak_19556 chr16 67030338 67030489 + 8.32824 NA intron (NM_173815, intron 2 of 11) intron (NM_173815, intron 2 of 11) -4003 NM_001190202 283848 Hs.346947 NM_173815 HPRD:07116 CES4A CES6|CES8 carboxylesterase 4A protein-coding 13-PTNLD9-TUMOR_peak_44664 chr6 33244730 33245413 + 8.32809 NA TTS (NM_022551).4 TTS (NM_022551).4 154 NM_003782 8705 Hs.534375 NM_003782 HPRD:04370 B3GALT4 BETA3GALT4|GALT2|GALT4 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4 protein-coding 13-PTNLD9-TUMOR_peak_3124 chr1 120930559 120930696 + 8.32809 NA intron (NM_001004340, intron 1 of 2) MLT1E1A|LTR|ERVL-MaLR 5317 NR_045213 2210 Hs.534956 NM_001004340 FCGR1B CD64b|IGFRB Fc fragment of IgG, high affinity Ib, receptor (CD64) protein-coding 13-PTNLD9-TUMOR_peak_30238 chr20 305947 306074 + 8.32807 NA promoter-TSS (NM_006943) promoter-TSS (NM_006943) -114 NR_109990 100507459 Hs.659689 NR_109990 NRSN2-AS1 - NRSN2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_53823 chr9 86958136 86958374 + 8.32807 NA intron (NM_022127, intron 1 of 18) intron (NM_022127, intron 1 of 18) -2561 NR_037638 64078 Hs.535966 NM_022127 HPRD:12200 SLC28A3 CNT3 solute carrier family 28 (concentrative nucleoside transporter), member 3 protein-coding 13-PTNLD9-TUMOR_peak_1418 chr1 43148738 43148852 + 8.32807 NA intron (NM_004559, intron 1 of 7) CpG 729 NM_004559 4904 Hs.473583 NM_004559 HPRD:01095 YBX1 BP-8|CSDA2|CSDB|DBPB|MDR-NF1|NSEP-1|NSEP1|YB-1|YB1 Y box binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_6706 chr10 24746756 24746937 + 8.32224 NA intron (NM_001282769, intron 1 of 13) intron (NM_001282769, intron 1 of 13) 8484 NM_001282769 56243 Hs.445885 NM_019590 HPRD:11132 KIAA1217 SKT KIAA1217 protein-coding 13-PTNLD9-TUMOR_peak_6883 chr10 32438677 32438864 + 8.31890 NA Intergenic MIR|SINE|MIR -93399 NM_004521 3799 Hs.327736 NM_004521 HPRD:07214 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 13-PTNLD9-TUMOR_peak_43477 chr6 2854047 2854185 + 8.31890 NA TTS (NR_039788) TTS (NR_039788) 225 NR_039788 100616285 NR_039788 miRBase:MI0017272 MIR4645 - microRNA 4645 ncRNA 13-PTNLD9-TUMOR_peak_23426 chr18 68044574 68044886 + 8.31890 NA Intergenic Intergenic 7097 NR_110764 101060542 Hs.586967 NR_110764 ENSG00000266278 LOC101060542 - uncharacterized LOC101060542 ncRNA 13-PTNLD9-TUMOR_peak_4514 chr1 177247946 177248074 + 8.31890 NA intron (NM_021165, intron 7 of 7) intron (NM_021165, intron 7 of 7) 107377 NM_021165 57795 Hs.495918 NM_021165 HPRD:13891 BRINP2 DBCCR1L2|FAM5B bone morphogenetic protein/retinoic acid inducible neural-specific 2 protein-coding 13-PTNLD9-TUMOR_peak_2953 chr1 115681663 115681763 + 8.31890 NA Intergenic Intergenic -49592 NM_005725 10100 Hs.310458 NM_005725 HPRD:18233 TSPAN2 NET3|TSN2|TSPAN-2 tetraspanin 2 protein-coding 13-PTNLD9-TUMOR_peak_47413 chr7 46597017 46597157 + 8.31843 NA Intergenic Intergenic -636216 NM_001013398 3486 Hs.450230 NM_000598 HPRD:00899 IGFBP3 BP-53|IBP3 insulin-like growth factor binding protein 3 protein-coding 13-PTNLD9-TUMOR_peak_6519 chr10 13459516 13459786 + 8.31843 NA Intergenic Intergenic -69353 NM_012247 22929 Hs.124027 NM_012247 HPRD:02944 SEPHS1 SELD|SPS|SPS1 selenophosphate synthetase 1 protein-coding 13-PTNLD9-TUMOR_peak_27142 chr2 67852923 67853052 + 8.31843 NA Intergenic Intergenic 199707 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LOC101927701 - uncharacterized LOC101927701 ncRNA 13-PTNLD9-TUMOR_peak_51083 chr8 67468038 67468146 + 8.31843 NA Intergenic Intergenic 57392 NM_001144755 4603 Hs.445898 NM_001080416 ENSG00000185697 MYBL1 A-MYB|AMYB v-myb avian myeloblastosis viral oncogene homolog-like 1 protein-coding 13-PTNLD9-TUMOR_peak_35353 chr3 111682388 111682548 + 8.31843 NA intron (NM_001134437, intron 13 of 17) intron (NM_001134437, intron 13 of 17) -15255 NM_018394 55347 Hs.477115 NM_018394 HPRD:07751 ABHD10 - abhydrolase domain containing 10 protein-coding 13-PTNLD9-TUMOR_peak_2763 chr1 109870067 109870185 + 8.31843 NA exon (NM_002959, exon 12 of 20) exon (NM_002959, exon 12 of 20) -20463 NM_001265613 343263 Hs.443402 NM_001010985 HPRD:17616 MYBPHL - myosin binding protein H-like protein-coding 13-PTNLD9-TUMOR_peak_6501 chr10 12749541 12749701 + 8.31843 NA intron (NM_020397, intron 3 of 9) intron (NM_020397, intron 3 of 9) -125512 NR_027322 283070 Hs.600547 NR_027322 LOC283070 - uncharacterized LOC283070 ncRNA 13-PTNLD9-TUMOR_peak_48713 chr7 104858796 104858957 + 8.31843 NA intron (NM_182692, intron 2 of 15) MER5A|DNA|hAT-Charlie 50648 NM_182691 6733 Hs.285197 NM_182691 HPRD:04280 SRPK2 SFRSK2 SRSF protein kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_11244 chr11 112829525 112829694 + 8.31843 NA TTS (NR_120563) TTS (NR_120563) -2360 NM_181351 4684 Hs.503878 NM_000615 HPRD:00301 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 13-PTNLD9-TUMOR_peak_48190 chr7 83824307 83824465 + 8.31843 NA promoter-TSS (NM_006080) promoter-TSS (NM_006080) -169 NM_006080 10371 Hs.252451 NM_006080 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A protein-coding 13-PTNLD9-TUMOR_peak_11103 chr11 106152295 106152469 + 8.31843 NA Intergenic MER117|DNA|hAT-Charlie 30248 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 13-PTNLD9-TUMOR_peak_23235 chr18 52768198 52768334 + 8.31843 NA Intergenic Intergenic 23271 NR_110743 101927229 Hs.638474 NR_110743 ENSG00000267013 LOC101927229 - uncharacterized LOC101927229 ncRNA 13-PTNLD9-TUMOR_peak_41053 chr5 64235655 64235766 + 8.31843 NA intron (NM_005869, intron 11 of 13) L1PA7|LINE|L1 170965 NM_001297644 10283 Hs.371372 NM_005869 HPRD:11541 CWC27 NY-CO-10|SDCCAG10 CWC27 spliceosome-associated protein homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_32688 chr22 18521265 18521369 + 8.31843 NA TTS (NR_024417) TTS (NR_024417) 9166 NR_024417 100192420 Hs.589947 NR_024417 ENSG00000235295 FLJ41941 - uncharacterized LOC100192420 ncRNA 13-PTNLD9-TUMOR_peak_47188 chr7 31533323 31533480 + 8.31843 NA Intergenic Intergenic -20284 NM_001257967 223075 Hs.224269 NM_194300 HPRD:14137 CCDC129 - coiled-coil domain containing 129 protein-coding 13-PTNLD9-TUMOR_peak_30032 chr2 233499554 233499714 + 8.31843 NA intron (NM_025202, intron 1 of 3) CpG 1427 NM_025202 80303 Hs.516769 NM_025202 HPRD:13265 EFHD1 MST133|MSTP133|SWS2 EF-hand domain family, member D1 protein-coding 13-PTNLD9-TUMOR_peak_48859 chr7 116311943 116312455 + 8.31843 NA promoter-TSS (NM_000245) promoter-TSS (NM_000245) -260 NM_000245 4233 Hs.132966 NM_000245 HPRD:01280 MET AUTS9|HGFR|RCCP2|c-Met MET proto-oncogene, receptor tyrosine kinase protein-coding 13-PTNLD9-TUMOR_peak_10729 chr11 77944065 77944214 + 8.31843 NA intron (NM_012296, intron 3 of 9) AluJo|SINE|Alu 44281 NM_020798 57558 Hs.531249 NM_020798 ENSG00000118369 USP35 - ubiquitin specific peptidase 35 protein-coding 13-PTNLD9-TUMOR_peak_48414 chr7 97797983 97798087 + 8.31843 NA intron (NM_014916, intron 6 of 13) intron (NM_014916, intron 6 of 13) -43531 NM_177455 168620 Hs.674510 NM_177455 HPRD:16356 BHLHA15 BHLHB8|MIST1 basic helix-loop-helix family, member a15 protein-coding 13-PTNLD9-TUMOR_peak_39411 chr4 139935532 139935731 + 8.31843 NA Intergenic Intergenic -1282 NM_012118 25819 Hs.639842 NM_012118 HPRD:16337 CCRN4L CCR4L|Ccr4c|NOC CCR4 carbon catabolite repression 4-like (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_41488 chr5 89226670 89226809 + 8.31843 NA Intergenic Intergenic 85798 NR_037433 100500825 NR_037433 miRBase:MI0016061 MIR3660 - microRNA 3660 ncRNA 13-PTNLD9-TUMOR_peak_37227 chr3 190708752 190708974 + 8.31843 NA Intergenic MER66B|LTR|ERV1 113144 NR_024343 100170222 Hs.717310 NR_024343 SNAR-I snaR-3 small ILF3/NF90-associated RNA I snRNA 13-PTNLD9-TUMOR_peak_8788 chr11 1568053 1568161 + 8.31843 NA Intergenic CpG 25043 NM_004420 1850 Hs.41688 NM_004420 HPRD:03617 DUSP8 C11orf81|HB5|HVH-5|HVH8 dual specificity phosphatase 8 protein-coding 13-PTNLD9-TUMOR_peak_6033 chr1 238632489 238632627 + 8.31843 NA Intergenic Intergenic 16759 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 - long intergenic non-protein coding RNA 1139 ncRNA 13-PTNLD9-TUMOR_peak_52340 chr8 142147875 142148091 + 8.31843 NA intron (NM_014957, intron 2 of 22) intron (NM_014957, intron 2 of 22) 9263 NM_014957 22898 Hs.18166 NM_014957 HPRD:11114 DENND3 - DENN/MADD domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_34039 chr3 21962002 21962138 + 8.31843 NA Intergenic L2c|LINE|L2 -36561 NR_046876 100874221 Hs.160616 NR_046876 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_33909 chr3 14920810 14921088 + 8.30299 NA intron (NM_152536, intron 2 of 19) intron (NM_152536, intron 2 of 19) 60480 NM_152536 152273 Hs.412406 NM_152536 HPRD:13322 FGD5 ZFYVE23 FYVE, RhoGEF and PH domain containing 5 protein-coding 13-PTNLD9-TUMOR_peak_48473 chr7 99499582 99499709 + 8.29845 NA intron (NM_033091, intron 5 of 5) L1MEc|LINE|L1 17578 NM_033017 89122 Hs.50749 NM_033017 HPRD:15556 TRIM4 RNF87 tripartite motif containing 4 protein-coding 13-PTNLD9-TUMOR_peak_15261 chr14 21439188 21439348 + 8.29845 NA Intergenic Intergenic 15638 NM_002934 6036 Hs.728 NM_002934 HPRD:00577 RNASE2 EDN|RAF3|RNS2 ribonuclease, RNase A family, 2 (liver, eosinophil-derived neurotoxin) protein-coding 13-PTNLD9-TUMOR_peak_10447 chr11 69262650 69262844 + 8.29845 NA Intergenic Intergenic -37582 NR_120543 101928292 Hs.736219 NR_120542 LINC01488 - long intergenic non-protein coding RNA 1488 ncRNA 13-PTNLD9-TUMOR_peak_25468 chr19 51227769 51227938 + 8.29845 NA exon (NM_002975, exon 3 of 4) exon (NM_002975, exon 3 of 4) 1248 NM_002975 6320 Hs.512680 NM_002975 HPRD:05277 CLEC11A CLECSF3|LSLCL|P47|SCGF C-type lectin domain family 11, member A protein-coding 13-PTNLD9-TUMOR_peak_13640 chr12 104609472 104609602 + 8.29506 NA promoter-TSS (NM_001093771) promoter-TSS (NM_001093771) -20 NM_001093771 7296 Hs.654922 NM_003330 HPRD:03068 TXNRD1 GRIM-12|TR|TR1|TRXR1|TXNR thioredoxin reductase 1 protein-coding 13-PTNLD9-TUMOR_peak_11628 chr11 129565921 129566164 + 8.29506 NA Intergenic Intergenic -78878 NR_120582 101929557 Hs.385785 NR_120582 LINC01395 - long intergenic non-protein coding RNA 1395 ncRNA 13-PTNLD9-TUMOR_peak_35553 chr3 122134325 122134428 + 8.29506 NA promoter-TSS (NR_125405) promoter-TSS (NR_125405) 506 NM_019069 54554 Hs.567513 NM_019069 HPRD:18302 WDR5B - WD repeat domain 5B protein-coding 13-PTNLD9-TUMOR_peak_1005 chr1 33169486 33169888 + 8.29506 NA Intergenic Intergenic -1326 NM_030786 81493 Hs.712631 NM_030786 HPRD:18134 SYNC SYNC1|SYNCOILIN syncoilin, intermediate filament protein protein-coding 13-PTNLD9-TUMOR_peak_5091 chr1 203483269 203483422 + 8.29375 NA Intergenic Intergenic 20074 NM_014359 26254 Hs.632468 NM_014359 HPRD:05498 OPTC OPT opticin protein-coding 13-PTNLD9-TUMOR_peak_10155 chr11 64110024 64110209 + 8.29357 NA promoter-TSS (NR_106977) promoter-TSS (NR_106977) -740 NR_106977 102466815 NR_106977 MIR7155 hsa-mir-7155 microRNA 7155 ncRNA 13-PTNLD9-TUMOR_peak_13964 chr12 117568090 117568234 + 8.29357 NA intron (NR_120464, intron 2 of 2) intron (NR_120464, intron 2 of 2) 30890 NR_120464 101928244 Hs.742266 NR_120464 TESC-AS1 - TESC antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_31080 chr20 39937028 39937338 + 8.29357 NA Intergenic Intergenic -8444 NM_015035 23051 Hs.380133 NM_015035 HPRD:10320 ZHX3 TIX1 zinc fingers and homeoboxes 3 protein-coding 13-PTNLD9-TUMOR_peak_29863 chr2 220138731 220138938 + 8.29357 NA Intergenic Intergenic -5206 NM_001039550 3300 Hs.77768 NM_006736 HPRD:07249 DNAJB2 DSMA5|HSJ-1|HSJ1|HSPF3 DnaJ (Hsp40) homolog, subfamily B, member 2 protein-coding 13-PTNLD9-TUMOR_peak_17607 chr15 72529895 72530057 + 8.29357 NA Intergenic Intergenic -6249 NM_182471 5315 Hs.534770 NM_002654 HPRD:01529 PKM CTHBP|HEL-S-30|OIP3|PK3|PKM2|TCB|THBP1 pyruvate kinase, muscle protein-coding 13-PTNLD9-TUMOR_peak_52956 chr9 27384325 27384457 + 8.29357 NA intron (NM_024761, intron 2 of 3) intron (NM_024761, intron 2 of 3) -87254 NM_001161585 54586 Hs.163070 NM_020641 HPRD:12932 EQTN AFAF|C9orf11|SPACA8|equatorin equatorin, sperm acrosome associated protein-coding 13-PTNLD9-TUMOR_peak_1583 chr1 45813829 45813957 + 8.29357 NA intron (NM_007170, intron 5 of 10) L2a|LINE|L2 -7751 NM_001048171 4595 Hs.271353 NM_012222 HPRD:05380 MUTYH MYH mutY homolog protein-coding 13-PTNLD9-TUMOR_peak_28371 chr2 128155947 128156078 + 8.29357 NA Intergenic Intergenic -19984 NM_000312 5624 Hs.224698 NM_000312 HPRD:01466 PROC APC|PC|PROC1|THPH3|THPH4 protein C (inactivator of coagulation factors Va and VIIIa) protein-coding 13-PTNLD9-TUMOR_peak_43915 chr6 15662460 15662738 + 8.29357 NA intron (NR_036448, intron 1 of 9) CpG 690 NR_036448 84062 Hs.571148 NM_032122 HPRD:06190 DTNBP1 BLOC1S8|DBND|HPS7|My031|SDY dystrobrevin binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_47096 chr7 25109742 25109987 + 8.29357 NA Intergenic Intergenic 55116 NM_018947 54205 Hs.437060 NM_018947 CYCS CYC|HCS|THC4 cytochrome c, somatic protein-coding 13-PTNLD9-TUMOR_peak_2816 chr1 110851033 110851157 + 8.29357 NA intron (NR_036595, intron 2 of 3) intron (NR_036595, intron 2 of 3) 30698 NR_036595 440600 Hs.649375 NR_036595 ENSG00000227963 LOC440600 - uncharacterized LOC440600 ncRNA 13-PTNLD9-TUMOR_peak_1167 chr1 37330555 37330676 + 8.28934 NA intron (NM_000831, intron 5 of 15) intron (NM_000831, intron 5 of 15) 169229 NM_000831 2899 Hs.128848 NM_000831 HPRD:00691 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate receptor, ionotropic, kainate 3 protein-coding 13-PTNLD9-TUMOR_peak_15341 chr14 23849219 23849360 + 8.28934 NA TTS (NM_001288746) TTS (NM_001288746) 3272 NM_001288744 116173 Hs.99272 NM_138460 HPRD:06986 CMTM5 CKLFSF5 CKLF-like MARVEL transmembrane domain containing 5 protein-coding 13-PTNLD9-TUMOR_peak_32323 chr21 40167036 40167282 + 8.28934 NA Intergenic L2a|LINE|L2 -10072 NM_001256295 2114 Hs.644231 NM_005239 HPRD:01263 ETS2 ETS2IT1 v-ets avian erythroblastosis virus E26 oncogene homolog 2 protein-coding 13-PTNLD9-TUMOR_peak_50238 chr8 21349586 21349785 + 8.28934 NA Intergenic Intergenic 193935 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 13-PTNLD9-TUMOR_peak_35548 chr3 122037547 122037785 + 8.28934 NA Intergenic Intergenic -6345 NM_005213 1475 Hs.518198 NM_005213 HPRD:01697 CSTA AREI|STF1|STFA cystatin A (stefin A) protein-coding 13-PTNLD9-TUMOR_peak_12428 chr12 30981741 30981883 + 8.28934 NA Intergenic Intergenic 33197 NR_040245 100287314 Hs.355210 NR_040245 ENSG00000235884 LINC00941 - long intergenic non-protein coding RNA 941 ncRNA 13-PTNLD9-TUMOR_peak_23364 chr18 60119552 60119724 + 8.28934 NA Intergenic Intergenic -71020 NM_017742 54877 Hs.114191 NM_017742 HPRD:11696 ZCCHC2 C18orf49 zinc finger, CCHC domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_882 chr1 29203757 29203926 + 8.28934 NA Intergenic Intergenic -9762 NM_001166005 2035 Hs.175437 NM_004437 HPRD:00558 EPB41 4.1R|EL1|HE erythrocyte membrane protein band 4.1 protein-coding 13-PTNLD9-TUMOR_peak_48235 chr7 87908278 87908463 + 8.28934 NA 3' UTR (NM_001205315, exon 6 of 6) 3' UTR (NM_001205315, exon 6 of 6) 27858 NM_024636 79689 Hs.521008 NM_024636 HPRD:11637 STEAP4 STAMP2|TIARP|TNFAIP9 STEAP family member 4 protein-coding 13-PTNLD9-TUMOR_peak_22395 chr18 63675 63789 + 8.28934 NA Intergenic (CCCTAA)n|Simple_repeat|Simple_repeat -45333 NR_033770 727758 Hs.585843 NR_033770 ROCK1P1 - Rho-associated, coiled-coil containing protein kinase 1 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_56471 chrX 129039780 129040072 + 8.28934 NA promoter-TSS (NM_006649) promoter-TSS (NM_006649) -171 NM_001166221 10813 Hs.458598 NM_006649 HPRD:06712 UTP14A NYCO16|SDCCAG16|dJ537K23.3 UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast) protein-coding 13-PTNLD9-TUMOR_peak_27913 chr2 105953973 105954087 + 8.28934 NA 5' UTR (NM_024093, exon 1 of 4) 5' UTR (NM_024093, exon 1 of 4) 214 NM_001286537 79074 Hs.549577 NM_024093 C2orf49 asw chromosome 2 open reading frame 49 protein-coding 13-PTNLD9-TUMOR_peak_24911 chr19 39165438 39165640 + 8.28934 NA intron (NM_004924, intron 1 of 20) intron (NM_004924, intron 1 of 20) 27272 NM_004924 81 Hs.270291 NM_004924 ACTN4 ACTININ-4|FSGS|FSGS1 actinin, alpha 4 protein-coding 13-PTNLD9-TUMOR_peak_10158 chr11 64217077 64217215 + 8.28934 NA intron (NR_073177, intron 1 of 1) LTR16A1|LTR|ERVL 617 NR_073177 100996455 Hs.634142 NR_073177 ENSG00000181908 LOC100996455 - uncharacterized LOC100996455 ncRNA 13-PTNLD9-TUMOR_peak_39241 chr4 122698879 122699083 + 8.28934 NA Intergenic Intergenic -12641 NM_152399 132332 Hs.27524 NM_152399 HPRD:08089 TMEM155 - transmembrane protein 155 protein-coding 13-PTNLD9-TUMOR_peak_13977 chr12 118118208 118118365 + 8.28934 NA intron (NM_173598, intron 4 of 19) intron (NM_173598, intron 4 of 19) 287742 NM_173598 283455 Hs.375836 NM_173598 HPRD:13952 KSR2 - kinase suppressor of ras 2 protein-coding 13-PTNLD9-TUMOR_peak_13222 chr12 67490778 67490903 + 8.28934 NA promoter-TSS (NR_120490) promoter-TSS (NR_120490) -776 NR_120490 102724421 Hs.135774 NR_120490 LOC102724421 - uncharacterized LOC102724421 ncRNA 13-PTNLD9-TUMOR_peak_21558 chr17 54857706 54857883 + 8.28934 NA Intergenic CpG 53462 NM_001085430 339210 Hs.658949 NM_001085430 ENSG00000214226 C17orf67 - chromosome 17 open reading frame 67 protein-coding 13-PTNLD9-TUMOR_peak_5604 chr1 225633479 225633750 + 8.28724 NA Intergenic Intergenic -17057 NM_194442 3930 Hs.435166 NM_002296 HPRD:02488 LBR DHCR14B|LMN2R|PHA|TDRD18 lamin B receptor protein-coding 13-PTNLD9-TUMOR_peak_38733 chr4 83665463 83665727 + 8.28724 NA intron (NM_001037582, intron 1 of 4) intron (NM_001037582, intron 1 of 4) 8988 NR_030301 693160 NR_030301 MIR575 MIRN575|hsa-mir-575 microRNA 575 ncRNA 13-PTNLD9-TUMOR_peak_54924 chr9 133321920 133322192 + 8.28724 NA intron (NM_054012, intron 1 of 14) intron (NM_054012, intron 1 of 14) 1962 NM_000050 445 Hs.160786 NM_000050 HPRD:04590 ASS1 ASS|CTLN1 argininosuccinate synthase 1 protein-coding 13-PTNLD9-TUMOR_peak_31775 chr20 61192896 61193026 + 8.28724 NA Intergenic Intergenic 30842 NR_029676 406923 NR_029676 MIR133A2 MIRN133A2 microRNA 133a-2 ncRNA 13-PTNLD9-TUMOR_peak_23879 chr19 9154275 9154504 + 8.28724 NA Intergenic Intergenic -49532 NM_001004456 125963 Hs.553577 NM_001004456 HPRD:17689 OR1M1 OR19-5|OR19-6 olfactory receptor, family 1, subfamily M, member 1 protein-coding 13-PTNLD9-TUMOR_peak_5028 chr1 202253283 202253424 + 8.28724 NA intron (NM_001017403, intron 6 of 17) intron (NM_001017403, intron 6 of 17) 57741 NM_014176 29089 Hs.5199 NM_014176 HPRD:13704 UBE2T PIG50 ubiquitin-conjugating enzyme E2T (putative) protein-coding 13-PTNLD9-TUMOR_peak_49252 chr7 135988175 135988372 + 8.28724 NA Intergenic Intergenic -326069 NM_001128619 767558 Hs.602015 NM_001128619 LUZP6 MPD6|MTPNUT leucine zipper protein 6 protein-coding 13-PTNLD9-TUMOR_peak_52324 chr8 141644113 141644310 + 8.27815 NA intron (NM_012154, intron 1 of 18) intron (NM_012154, intron 1 of 18) 1435 NM_012154 27161 Hs.743313 NM_012154 HPRD:06943 AGO2 EIF2C2|Q10 argonaute RISC catalytic component 2 protein-coding 13-PTNLD9-TUMOR_peak_18918 chr16 29273120 29273292 + 8.27815 NA Intergenic Intergenic -40402 NR_002939 440352 Hs.658149 NR_002939 SNX29P2 RUNDC2C sorting nexin 29 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_3230 chr1 144311531 144311630 + 8.27716 NA intron (NR_111953, intron 2 of 3) CpG 29179 NR_109754 728855 Hs.456578 NR_024510 ENSG00000235398 LINC00623 CH17-118O6.2 long intergenic non-protein coding RNA 623 ncRNA 13-PTNLD9-TUMOR_peak_49747 chr7 153219587 153219722 + 8.27532 NA Intergenic Intergenic -110335 NR_125776 103724390 Hs.614280 NR_125776 LINC01287 TCONS_l2_00027522 long intergenic non-protein coding RNA 1287 ncRNA 13-PTNLD9-TUMOR_peak_19270 chr16 48325342 48325531 + 8.27385 NA intron (NM_001300948, intron 7 of 13) intron (NM_001300948, intron 7 of 13) 47358 NM_001300948 83752 Hs.295923 NM_031490 LONP2 LONP|LONPL lon peptidase 2, peroxisomal protein-coding 13-PTNLD9-TUMOR_peak_13743 chr12 108817320 108817520 + 8.27385 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 50046 NR_120483 102723562 Hs.455693 NR_120483 LINC01498 - long intergenic non-protein coding RNA 1498 ncRNA 13-PTNLD9-TUMOR_peak_55856 chrX 49789879 49790063 + 8.27385 NA intron (NM_001127898, intron 3 of 14) L1HS|LINE|L1 10765 NR_030226 574504 NR_030226 MIR502 MIRN502|hsa-mir-502 microRNA 502 ncRNA 13-PTNLD9-TUMOR_peak_37080 chr3 186633989 186634125 + 8.27385 NA Intergenic Intergenic -14258 NM_173216 6480 Hs.207459 NM_003032 HPRD:00184 ST6GAL1 SIAT1|ST6GalI|ST6N ST6 beta-galactosamide alpha-2,6-sialyltranferase 1 protein-coding 13-PTNLD9-TUMOR_peak_23374 chr18 60449201 60449461 + 8.27385 NA intron (NM_194449, intron 1 of 16) intron (NM_194449, intron 1 of 16) 66659 NM_194449 23239 Hs.465337 NM_194449 HPRD:15145 PHLPP1 PHLPP|PLEKHE1|SCOP PH domain and leucine rich repeat protein phosphatase 1 protein-coding 13-PTNLD9-TUMOR_peak_54294 chr9 107681844 107682233 + 8.27385 NA intron (NM_005502, intron 1 of 49) intron (NM_005502, intron 1 of 49) 8489 NM_005502 19 Hs.659274 NM_005502 HPRD:02501 ABCA1 ABC-1|ABC1|CERP|HDLDT1|TGD ATP-binding cassette, sub-family A (ABC1), member 1 protein-coding 13-PTNLD9-TUMOR_peak_10851 chr11 86513797 86514093 + 8.27385 NA intron (NR_120591, intron 1 of 4) intron (NR_120591, intron 1 of 4) 2663 NM_001293178 11098 Hs.25338 NM_007173 HPRD:07149 PRSS23 SIG13|SPUVE|ZSIG13 protease, serine, 23 protein-coding 13-PTNLD9-TUMOR_peak_54770 chr9 127952040 127952232 + 8.27385 NA promoter-TSS (NM_001123355) promoter-TSS (NM_001123355) 82 NM_002721 5537 Hs.744091 NM_002721 HPRD:02141 PPP6C PP6|PP6C protein phosphatase 6, catalytic subunit protein-coding 13-PTNLD9-TUMOR_peak_8192 chr10 103543105 103543296 + 8.27385 NA promoter-TSS (NM_006993) promoter-TSS (NM_006993) -30 NM_006993 10360 Hs.90691 NM_006993 HPRD:07346 NPM3 PORMIN|TMEM123 nucleophosmin/nucleoplasmin 3 protein-coding 13-PTNLD9-TUMOR_peak_10417 chr11 68671271 68671465 + 8.27385 NA promoter-TSS (NM_181515) promoter-TSS (NM_181515) 49 NM_002180 3508 Hs.503048 NM_002180 HPRD:02736 IGHMBP2 CATF1|HCSA|HMN6|SMARD1|SMUBP2|ZFAND7 immunoglobulin mu binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_42202 chr5 136750924 136751306 + 8.27385 NA intron (NM_004598, intron 2 of 10) intron (NM_004598, intron 2 of 10) 83903 NM_004598 6695 Hs.596136 NM_004598 HPRD:11887 SPOCK1 SPOCK|TESTICAN|TIC1 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1 protein-coding 13-PTNLD9-TUMOR_peak_26097 chr2 10548604 10548713 + 8.27228 NA intron (NM_001258357, intron 2 of 4) intron (NM_001258357, intron 2 of 4) 38317 NR_028374 100302743 Hs.730525 NR_028374 ENSG00000206633 SNORA80B ACA67B small nucleolar RNA, H/ACA box 80B snoRNA 13-PTNLD9-TUMOR_peak_27955 chr2 109270611 109270837 + 8.27110 NA promoter-TSS (NM_001193485) promoter-TSS (NM_001193485) -544 NM_001193485 3987 Hs.597715 NM_004987 HPRD:03978 LIMS1 PINCH|PINCH-1|PINCH1 LIM and senescent cell antigen-like domains 1 protein-coding 13-PTNLD9-TUMOR_peak_4584 chr1 179560704 179561077 + 8.26969 NA promoter-TSS (NM_001199089) promoter-TSS (NM_001199089) -99 NM_001199089 163589 Hs.197354 NM_173533 HPRD:15483 TDRD5 TUDOR3 tudor domain containing 5 protein-coding 13-PTNLD9-TUMOR_peak_53608 chr9 74295559 74295788 + 8.26969 NA Intergenic Intergenic 88127 NM_013390 23670 Hs.494146 NM_013390 HPRD:09317 TMEM2 - transmembrane protein 2 protein-coding 13-PTNLD9-TUMOR_peak_25969 chr2 3383379 3383740 + 8.26872 NA 5' UTR (NM_016030, exon 1 of 12) 5' UTR (NM_016030, exon 1 of 12) 113 NM_016030 51112 Hs.252713 NM_016030 HPRD:15580 TRAPPC12 TTC-15|TTC15 trafficking protein particle complex 12 protein-coding 13-PTNLD9-TUMOR_peak_37278 chr3 193544242 193544566 + 8.26872 NA Intergenic Intergenic 167623 NR_027764 100128023 Hs.730112 NR_027764 DPPA2P3 - developmental pluripotency associated 2 pseudogene 3 pseudo 13-PTNLD9-TUMOR_peak_50350 chr8 23389975 23390279 + 8.26872 NA intron (NM_016612, intron 1 of 3) intron (NM_016612, intron 1 of 3) 3764 NM_016612 51312 Hs.596025 NM_016612 SLC25A37 MFRN|MFRN1|MSC|MSCP|PRO1278|PRO1584|PRO2217 solute carrier family 25 (mitochondrial iron transporter), member 37 protein-coding 13-PTNLD9-TUMOR_peak_45114 chr6 43895000 43895267 + 8.25840 NA intron (NR_024478, intron 1 of 1) intron (NR_024478, intron 1 of 1) 36368 NR_024478 100132354 Hs.376232 NR_024478 LINC01512 - long intergenic non-protein coding RNA 1512 ncRNA 13-PTNLD9-TUMOR_peak_32049 chr21 28942657 28942791 + 8.25840 NA intron (NR_049807, intron 2 of 4) intron (NR_049807, intron 2 of 4) -151974 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 13-PTNLD9-TUMOR_peak_49270 chr7 137294398 137294523 + 8.25840 NA intron (NM_004717, intron 8 of 33) intron (NM_004717, intron 8 of 33) 237149 NM_004717 9162 Hs.242947 NM_004717 HPRD:07238 DGKI DGK-IOTA diacylglycerol kinase, iota protein-coding 13-PTNLD9-TUMOR_peak_314 chr1 9223858 9223973 + 8.25840 NA Intergenic Intergenic -12079 NR_029610 407040 Hs.730325 NR_029610 miRBase:MI0000268 MIR34A MIRN34A|miRNA34A|mir-34 microRNA 34a ncRNA 13-PTNLD9-TUMOR_peak_26870 chr2 47597161 47597298 + 8.25840 NA intron (NM_002354, intron 1 of 8) CpG 942 NM_002354 4072 Hs.542050 NM_002354 HPRD:01709 EPCAM DIAR5|EGP-2|EGP314|EGP40|ESA|HNPCC8|KS1/4|KSA|M4S1|MIC18|MK-1|TACSTD1|TROP1 epithelial cell adhesion molecule protein-coding 13-PTNLD9-TUMOR_peak_19454 chr16 57835350 57835449 + 8.25840 NA intron (NM_001130100, intron 1 of 19) intron (NM_001130100, intron 1 of 19) 1040 NM_001130100 3801 Hs.23131 NM_005550 HPRD:05171 KIFC3 - kinesin family member C3 protein-coding 13-PTNLD9-TUMOR_peak_19914 chr16 83932382 83932479 + 8.25840 NA promoter-TSS (NM_012213) promoter-TSS (NM_012213) -300 NM_012213 23417 Hs.644610 NM_012213 HPRD:05999 MLYCD MCD malonyl-CoA decarboxylase protein-coding 13-PTNLD9-TUMOR_peak_47216 chr7 33847660 33847774 + 8.25840 NA Intergenic Intergenic -96806 NM_133468 168667 Hs.660998 NM_133468 HPRD:16368 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 13-PTNLD9-TUMOR_peak_41862 chr5 121519079 121519438 + 8.25522 NA TTS (NM_001195535) TTS (NM_001195535) 23387 NM_001195535 100505841 Hs.733368 NM_001195535 LOC100505841 - zinc finger protein 474-like protein-coding 13-PTNLD9-TUMOR_peak_44765 chr6 35328201 35328412 + 8.25522 NA intron (NM_001171819, intron 2 of 6) MIRb|SINE|MIR 17971 NM_177435 5467 Hs.696032 NM_006238 HPRD:02679 PPARD FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB peroxisome proliferator-activated receptor delta protein-coding 13-PTNLD9-TUMOR_peak_3400 chr1 147486748 147487177 + 8.25522 NA intron (NR_111936, intron 1 of 9) intron (NR_111936, intron 1 of 9) 226 NR_111936 100034743 Hs.696575 NR_003377 ENSG00000215860 PDZK1P2 OTTHUMT00000038524|PDZK1P1 PDZ domain containing 1 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_51780 chr8 122176447 122176836 + 8.25040 NA Intergenic Intergenic -352332 NM_021021 6641 Hs.46701 NM_021021 HPRD:02490 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1) protein-coding 13-PTNLD9-TUMOR_peak_47779 chr7 67539650 67539754 + 8.25040 NA Intergenic AluY|SINE|Alu 54462 NR_120514 102723427 Hs.583491 NR_120514 LOC102723427 - uncharacterized LOC102723427 ncRNA 13-PTNLD9-TUMOR_peak_15103 chr13 110664589 110664834 + 8.25040 NA Intergenic Intergenic -225797 NM_003749 8660 Hs.442344 NM_003749 HPRD:02878 IRS2 IRS-2 insulin receptor substrate 2 protein-coding 13-PTNLD9-TUMOR_peak_43178 chr5 176543994 176544150 + 8.25040 NA Intergenic CpG -16008 NM_172349 64324 Hs.106861 NM_022455 HPRD:09455 NSD1 ARA267|KMT3B|SOTOS|SOTOS1|STO nuclear receptor binding SET domain protein 1 protein-coding 13-PTNLD9-TUMOR_peak_6039 chr1 238916574 238916692 + 8.25040 NA Intergenic Intergenic -267316 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 - long intergenic non-protein coding RNA 1139 ncRNA 13-PTNLD9-TUMOR_peak_22347 chr17 80486749 80486887 + 8.25040 NA intron (NM_004514, intron 1 of 8) MER20|DNA|hAT-Charlie 9224 NM_004514 3607 Hs.591140 NM_004514 HPRD:00982 FOXK2 ILF|ILF-1|ILF1 forkhead box K2 protein-coding 13-PTNLD9-TUMOR_peak_5848 chr1 232941122 232941544 + 8.25040 NA exon (NM_019090, exon 1 of 1) exon (NM_019090, exon 1 of 1) 695 NM_019090 54627 Hs.160373 NM_019090 ENSG00000212916 MAP10 KIAA1383|MTR120 microtubule-associated protein 10 protein-coding 13-PTNLD9-TUMOR_peak_37682 chr4 3731411 3731515 + 8.25040 NA Intergenic Intergenic -36833 NM_000683 152 Hs.123022 NM_000683 HPRD:00085 ADRA2C ADRA2L2|ADRA2RL2|ADRARL2|ALPHA2CAR adrenoceptor alpha 2C protein-coding 13-PTNLD9-TUMOR_peak_40212 chr5 3323759 3323998 + 8.25040 NA Intergenic (TG)n|Simple_repeat|Simple_repeat 145929 NR_104617 102467074 Hs.575250 NR_104617 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 13-PTNLD9-TUMOR_peak_33196 chr22 36649018 36649176 + 8.25040 NA promoter-TSS (NM_003661) promoter-TSS (NM_003661) -20 NM_001136540 8542 Hs.114309 NM_003661 HPRD:04774 APOL1 APO-L|APOL|APOL-I|FSGS4 apolipoprotein L, 1 protein-coding 13-PTNLD9-TUMOR_peak_7357 chr10 51567068 51567186 + 8.25040 NA intron (NM_001145263, intron 1 of 9) L2b|LINE|L2 2019 NM_001145260 8031 Hs.643658 NM_005437 HPRD:03584 NCOA4 ARA70|ELE1|PTC3|RFG nuclear receptor coactivator 4 protein-coding 13-PTNLD9-TUMOR_peak_22946 chr18 34020708 34020879 + 8.25040 NA intron (NM_001281739, intron 3 of 23) intron (NM_001281739, intron 3 of 23) 143134 NM_001281739 80206 Hs.630884 NM_025135 HPRD:16894 FHOD3 FHOS2|Formactin2 formin homology 2 domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_21122 chr17 41437796 41437923 + 8.24888 NA Intergenic Intergenic 28407 NR_027412 100130581 Hs.546897 NR_027412 ENSG00000188825 LINC00910 - long intergenic non-protein coding RNA 910 ncRNA 13-PTNLD9-TUMOR_peak_6474 chr10 11917080 11917308 + 8.24888 NA intron (NR_038222, intron 2 of 5) intron (NR_038222, intron 2 of 5) 19515 NR_038222 219731 Hs.576787 NR_038222 ENSG00000225778 PROSER2-AS1 - PROSER2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_51494 chr8 103826970 103827160 + 8.24184 NA Intergenic Intergenic 49332 NM_148174 51582 Hs.459106 NM_015878 HPRD:07443 AZIN1 OAZI|OAZIN|ODC1L antizyme inhibitor 1 protein-coding 13-PTNLD9-TUMOR_peak_44694 chr6 33588722 33588860 + 8.24073 NA promoter-TSS (NM_002224) promoter-TSS (NM_002224) -365 NM_002224 3710 Hs.65758 NM_002224 HPRD:00926 ITPR3 IP3R|IP3R3 inositol 1,4,5-trisphosphate receptor, type 3 protein-coding 13-PTNLD9-TUMOR_peak_15844 chr14 55738735 55738885 + 8.24073 NA promoter-TSS (NM_152231) promoter-TSS (NM_152231) -62 NM_152231 55030 Hs.525348 NM_017943 HPRD:16442 FBXO34 Fbx34 F-box protein 34 protein-coding 13-PTNLD9-TUMOR_peak_3566 chr1 150551163 150551323 + 8.23644 NA intron (NM_021960, intron 1 of 2) intron (NM_021960, intron 1 of 2) 971 NM_182763 4170 Hs.632486 NM_021960 HPRD:08870 MCL1 BCL2L3|EAT|MCL1-ES|MCL1L|MCL1S|Mcl-1|TM|bcl2-L-3|mcl1/EAT myeloid cell leukemia 1 protein-coding 13-PTNLD9-TUMOR_peak_18947 chr16 29623865 29623976 + 8.23287 NA TTS (NR_002593) TTS (NR_002593) 1118 NR_002593 81893 Hs.677169 NM_031211 HPRD:13964 SLC7A5P1 DC49|LAT1-3TM|MLAS|hLAT1-3TM solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_14273 chr12 126675635 126675797 + 8.22988 NA Intergenic CpG 95178 NR_110053 101927464 Hs.443932 NR_110053 ENSG00000256342 LOC101927464 - uncharacterized LOC101927464 ncRNA 13-PTNLD9-TUMOR_peak_2110 chr1 66902298 66902460 + 8.22988 NA Intergenic MIR3|SINE|MIR 82318 NM_001297442 5142 Hs.198072 NM_002600 HPRD:02528 PDE4B DPDE4|PDEIVB phosphodiesterase 4B, cAMP-specific protein-coding 13-PTNLD9-TUMOR_peak_38659 chr4 78500971 78501139 + 8.22988 NA intron (NM_006419, intron 1 of 4) intron (NM_006419, intron 1 of 4) 68148 NM_006419 10563 Hs.100431 NM_006419 HPRD:05513 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 chemokine (C-X-C motif) ligand 13 protein-coding 13-PTNLD9-TUMOR_peak_16178 chr14 70345992 70346217 + 8.22988 NA promoter-TSS (NM_022137) promoter-TSS (NM_022137) -10 NM_001034852 64093 Hs.497349 NM_022137 HPRD:12244 SMOC1 OAS SPARC related modular calcium binding 1 protein-coding 13-PTNLD9-TUMOR_peak_19335 chr16 52147451 52147800 + 8.22988 NA Intergenic Intergenic 28432 NR_104655 102467079 Hs.98466 NR_104655 LOC102467079 - uncharacterized LOC102467079 ncRNA 13-PTNLD9-TUMOR_peak_15715 chr14 50589158 50589362 + 8.22988 NA intron (NM_006939, intron 21 of 22) MLT1L|LTR|ERVL-MaLR -5963 NM_024558 79609 Hs.558541 NM_024558 HPRD:16605 VCPKMT C14orf138|METTL21D|VCP-KMT valosin containing protein lysine (K) methyltransferase protein-coding 13-PTNLD9-TUMOR_peak_56157 chrX 74494228 74494401 + 8.22988 NA exon (NM_145052, exon 1 of 7) exon (NM_145052, exon 1 of 7) 420 NR_030774 139596 Hs.91612 NM_145052 HPRD:06640 UPRT FUR1|UPP uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_13576 chr12 100753746 100753887 + 8.22988 NA intron (NM_139319, intron 1 of 11) intron (NM_139319, intron 1 of 11) 2959 NM_001145288 246213 Hs.116871 NM_139319 HPRD:10457 SLC17A8 DFNA25|VGLUT3 solute carrier family 17 (vesicular glutamate transporter), member 8 protein-coding 13-PTNLD9-TUMOR_peak_32690 chr22 18538989 18539192 + 8.22988 NA Intergenic Intergenic -21596 NM_017929 55670 Hs.517400 NM_017929 PEX26 PBD7A|PBD7B|PEX26M1T|Pex26pM1T peroxisomal biogenesis factor 26 protein-coding 13-PTNLD9-TUMOR_peak_40899 chr5 55385205 55385467 + 8.22988 NA Intergenic Intergenic 94341 NR_102755 441072 Hs.482141 NR_102755 ENSG00000227908 FLJ31104 - uncharacterized LOC441072 ncRNA 13-PTNLD9-TUMOR_peak_14408 chr13 21900331 21900688 + 8.22988 NA intron (NR_103840, intron 2 of 5) CpG 18416 NR_103840 100652865 Hs.659198 NR_103840 LINC00539 LINC00422 long intergenic non-protein coding RNA 539 ncRNA 13-PTNLD9-TUMOR_peak_26068 chr2 9939933 9940055 + 8.22988 NA Intergenic Intergenic -43577 NM_005680 9014 Hs.584833 NM_005680 HPRD:05363 TAF1B MGC:9349|RAF1B|RAFI63|SL1|TAFI63 TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa protein-coding 13-PTNLD9-TUMOR_peak_26419 chr2 27994694 27994917 + 8.22988 NA intron (NM_145330, intron 1 of 2) CpG 221 NM_145330 9553 Hs.515879 NM_004891 HPRD:14753 MRPL33 C2orf1|L33mt|MRP-L33|RPL33L mitochondrial ribosomal protein L33 protein-coding 13-PTNLD9-TUMOR_peak_29253 chr2 181612586 181612843 + 8.22988 NA intron (NR_104324, intron 3 of 4) intron (NR_104324, intron 3 of 4) 55883 NR_104320 101669767 NR_104319 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_18858 chr16 27622782 27622923 + 8.22988 NA intron (NM_015202, intron 2 of 27) MIR3|SINE|MIR 61384 NM_015202 23247 Hs.460459 NM_015202 HPRD:13806 KIAA0556 - KIAA0556 protein-coding 13-PTNLD9-TUMOR_peak_44548 chr6 31566476 31566585 + 8.22988 NA Intergenic Intergenic -5768 NM_147130 259197 Hs.509513 NM_147130 HPRD:11384 NCR3 1C7|CD337|LY117|MALS|NKp30 natural cytotoxicity triggering receptor 3 protein-coding 13-PTNLD9-TUMOR_peak_31445 chr20 49109524 49109761 + 8.22988 NA Intergenic Intergenic -17216 NM_002827 5770 Hs.417549 NM_002827 HPRD:01477 PTPN1 PTP1B protein tyrosine phosphatase, non-receptor type 1 protein-coding 13-PTNLD9-TUMOR_peak_46159 chr6 140064859 140065043 + 8.22988 NA Intergenic Intergenic -27259 NR_038399 100132735 Hs.62646 NR_038399 LOC100132735 - uncharacterized LOC100132735 ncRNA 13-PTNLD9-TUMOR_peak_47815 chr7 70596535 70596747 + 8.22988 NA promoter-TSS (NM_022479) promoter-TSS (NM_022479) -882 NM_022479 64409 Hs.488591 NM_022479 HPRD:15655 WBSCR17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T5L Williams-Beuren syndrome chromosome region 17 protein-coding 13-PTNLD9-TUMOR_peak_1891 chr1 56038864 56039067 + 8.22988 NA Intergenic Intergenic 347651 NR_039618 100616272 NR_039618 miRBase:MI0016759 MIR4422 - microRNA 4422 ncRNA 13-PTNLD9-TUMOR_peak_53077 chr9 34546893 34547100 + 8.22988 NA Intergenic Intergenic -21014 NR_024369 415056 Hs.734229 NR_024369 CNTFR-AS1 - CNTFR antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_34734 chr3 56918546 56918696 + 8.22988 NA intron (NM_001128615, intron 3 of 12) MER5A|DNA|hAT-Charlie 31878 NM_001289698 50650 Hs.476402 NM_019555 HPRD:12480 ARHGEF3 GEF3|STA3|XPLN Rho guanine nucleotide exchange factor (GEF) 3 protein-coding 13-PTNLD9-TUMOR_peak_26556 chr2 36566048 36566224 + 8.22988 NA Intergenic Intergenic 16577 NR_037631 100288911 Hs.432924 NR_037631 LOC100288911 - uncharacterized LOC100288911 ncRNA 13-PTNLD9-TUMOR_peak_52882 chr9 20981179 20981404 + 8.22988 NA intron (NM_017794, intron 39 of 45) intron (NM_017794, intron 39 of 45) 50344 NM_001010915 401494 Hs.716678 NM_001010915 PTPLAD2 HACD4 protein tyrosine phosphatase-like A domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_25741 chr19 56988015 56988411 + 8.22871 NA intron (NR_030740, intron 1 of 6) intron (NR_030740, intron 1 of 6) 557 NM_022103 63934 Hs.676605 NM_022103 HPRD:08592 ZNF667 MIPU1 zinc finger protein 667 protein-coding 13-PTNLD9-TUMOR_peak_18290 chr16 3020200 3020332 + 8.22871 NA intron (NM_001284512, intron 1 of 1) CpG-8725 923 NM_001284513 124222 Hs.351474 NM_152341 HPRD:08697 PAQR4 - progestin and adipoQ receptor family member IV protein-coding 13-PTNLD9-TUMOR_peak_16762 chr15 21927409 21927579 + 8.22871 NA Intergenic Intergenic 13245 NR_027053 646214 Hs.510697 NR_027053 LOC646214 - p21 protein (Cdc42/Rac)-activated kinase 2 pseudogene pseudo 13-PTNLD9-TUMOR_peak_36524 chr3 157212521 157212648 + 8.22871 NA intron (NM_001167911, intron 2 of 12) intron (NM_001167911, intron 2 of 12) 711 NM_001167917 79674 Hs.658046 NM_024621 HPRD:07782 VEPH1 MELT|VEPH ventricular zone expressed PH domain-containing 1 protein-coding 13-PTNLD9-TUMOR_peak_4962 chr1 201449659 201450034 + 8.22545 NA Intergenic MER5B|DNA|hAT-Charlie -11547 NM_012396 23612 Hs.268557 NM_012396 HPRD:09519 PHLDA3 TIH1 pleckstrin homology-like domain, family A, member 3 protein-coding 13-PTNLD9-TUMOR_peak_5069 chr1 203253926 203254058 + 8.22367 NA Intergenic Intergenic -2288 NR_117097 100506775 Hs.443859 NR_117097 LINC01353 - long intergenic non-protein coding RNA 1353 ncRNA 13-PTNLD9-TUMOR_peak_10519 chr11 71421992 71422241 + 8.22367 NA Intergenic HERVS71-int|LTR|ERV1 -76441 NM_018172 55199 Hs.567527 NM_018172 HPRD:13337 FAM86C1 FAM86C family with sequence similarity 86, member C1 protein-coding 13-PTNLD9-TUMOR_peak_23556 chr18 77866997 77867205 + 8.22367 NA 5' UTR (NM_014913, exon 1 of 4) 5' UTR (NM_014913, exon 1 of 4) 186 NM_014913 22850 Hs.131915 NM_014913 HPRD:13822 ADNP2 ZNF508 ADNP homeobox 2 protein-coding 13-PTNLD9-TUMOR_peak_14384 chr13 20694669 20694845 + 8.22367 NA Intergenic MER51A|LTR|ERV1 40426 NM_021954 2700 Hs.130313 NM_021954 HPRD:00415 GJA3 CTRCT14|CX46|CZP3 gap junction protein, alpha 3, 46kDa protein-coding 13-PTNLD9-TUMOR_peak_46980 chr7 20009893 20010017 + 8.22367 NA intron (NR_110114, intron 3 of 5) L2a|LINE|L2 170094 NR_110114 101927668 Hs.715900 NR_110114 ENSG00000243004 LOC101927668 - uncharacterized LOC101927668 ncRNA 13-PTNLD9-TUMOR_peak_35843 chr3 128949657 128949766 + 8.22367 NA Intergenic Tigger3b|DNA|TcMar-Tigger -18742 NM_016128 22820 Hs.518250 NM_016128 HPRD:09887 COPG1 COPG coatomer protein complex, subunit gamma 1 protein-coding 13-PTNLD9-TUMOR_peak_43788 chr6 11633169 11633303 + 8.22367 NA Intergenic Intergenic 94776 NM_001100829 100113407 Hs.146317 NM_001100829 ENSG00000205269 TMEM170B - transmembrane protein 170B protein-coding 13-PTNLD9-TUMOR_peak_32317 chr21 40127634 40127794 + 8.22367 NA intron (NR_027065, intron 1 of 6) intron (NR_027065, intron 1 of 6) -3533 NR_027067 400866 Hs.278704 NM_001001789 HPRD:10744 LINC00114 C21orf24|NCRNA00114 long intergenic non-protein coding RNA 114 ncRNA 13-PTNLD9-TUMOR_peak_44897 chr6 38607043 38607201 + 8.22367 NA intron (NM_052893, intron 1 of 11) intron (NM_052893, intron 1 of 11) 802 NM_052893 114781 Hs.603858 NM_052893 HPRD:12543 BTBD9 dJ322I12.1 BTB (POZ) domain containing 9 protein-coding 13-PTNLD9-TUMOR_peak_47356 chr7 44349448 44349551 + 8.22367 NA intron (NM_001293170, intron 1 of 20) CpG 15731 NM_172079 816 Hs.351887 NM_001220 HPRD:12127 CAMK2B CAM2|CAMK2|CAMKB calcium/calmodulin-dependent protein kinase II beta protein-coding 13-PTNLD9-TUMOR_peak_30742 chr20 30300345 30300912 + 8.22367 NA intron (NM_001191, intron 2 of 2) intron (NM_001191, intron 2 of 2) 10028 NM_138578 598 Hs.516966 NM_001191 HPRD:02497 BCL2L1 BCL-XL/S|BCL2L|BCLX|BCLXL|BCLXS|Bcl-X|PPP1R52|bcl-xL|bcl-xS BCL2-like 1 protein-coding 13-PTNLD9-TUMOR_peak_46196 chr6 143994892 143995093 + 8.22367 NA intron (NM_001100166, intron 1 of 11) intron (NM_001100166, intron 1 of 11) -4110 NM_001100164 9749 Hs.102471 NM_014721 HPRD:16378 PHACTR2 C6orf56 phosphatase and actin regulator 2 protein-coding 13-PTNLD9-TUMOR_peak_20127 chr16 89458292 89458445 + 8.22367 NA intron (NM_001256182, intron 3 of 13) LTR10C|LTR|ERV1 -38958 NR_110932 101927817 Hs.667942 NR_110931 LOC101927817 - uncharacterized LOC101927817 ncRNA 13-PTNLD9-TUMOR_peak_3811 chr1 154851090 154851191 + 8.22367 NA Intergenic Intergenic -8386 NM_002249 3782 Hs.490765 NM_002249 HPRD:04283 KCNN3 KCa2.3|SK3|SKCA3|hSK3 potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3 protein-coding 13-PTNLD9-TUMOR_peak_33790 chr3 12197472 12197601 + 8.22367 NA intron (NM_003256, intron 3 of 4) intron (NM_003256, intron 3 of 4) 3315 NM_003256 7079 Hs.591665 NM_003256 HPRD:03557 TIMP4 - TIMP metallopeptidase inhibitor 4 protein-coding 13-PTNLD9-TUMOR_peak_51719 chr8 119634461 119634591 + 8.22367 NA promoter-TSS (NM_001101676) promoter-TSS (NM_001101676) -292 NR_109794 401474 Hs.359393 NM_207506 HPRD:15293 SAMD12 - sterile alpha motif domain containing 12 protein-coding 13-PTNLD9-TUMOR_peak_51510 chr8 104256776 104256969 + 8.22367 NA Intergenic Intergenic -53789 NM_001164615 8323 Hs.591863 NM_003506 HPRD:04559 FZD6 FZ-6|FZ6|HFZ6|NDNC10 frizzled class receptor 6 protein-coding 13-PTNLD9-TUMOR_peak_47754 chr7 66057239 66057478 + 8.22367 NA promoter-TSS (NR_111974) promoter-TSS (NR_111974) 36 NR_111972 493754 Hs.732409 NR_002933 LOC493754 - RAB guanine nucleotide exchange factor (GEF) 1 pseudogene pseudo 13-PTNLD9-TUMOR_peak_47587 chr7 57547155 57547348 + 8.21883 NA Intergenic (GAGTG)n|Simple_repeat|Simple_repeat 37368 NM_001159279 441234 Hs.533121 NM_001159279 ENSG00000182111 ZNF716 - zinc finger protein 716 protein-coding 13-PTNLD9-TUMOR_peak_52568 chr9 10189 10336 + 8.21619 NA Intergenic (CCCTAA)n|Simple_repeat|Simple_repeat -1725 NR_051986 100287596 Hs.719844 NR_051986 DDX11L5 - DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 5 pseudo 13-PTNLD9-TUMOR_peak_14111 chr12 122229819 122229967 + 8.21619 NA intron (NM_019034, intron 2 of 4) intron (NM_019034, intron 2 of 4) 1701 NM_019034 54509 Hs.644504 NM_019034 HPRD:15246 RHOF ARHF|RIF ras homolog family member F (in filopodia) protein-coding 13-PTNLD9-TUMOR_peak_35488 chr3 118960404 118960549 + 8.21529 NA promoter-TSS (NM_003778) promoter-TSS (NM_003778) -724 NM_212543 8702 Hs.13225 NM_003778 HPRD:04930 B4GALT4 B4Gal-T4|beta4Gal-T4 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4 protein-coding 13-PTNLD9-TUMOR_peak_21739 chr17 61820149 61820294 + 8.21529 NA promoter-TSS (NM_001165969) promoter-TSS (NM_001165969) -891 NM_001003787 92335 Hs.514402 NM_153335 HPRD:14332 STRADA LYK5|NY-BR-96|PMSE|STRAD|Stlk STE20-related kinase adaptor alpha protein-coding 13-PTNLD9-TUMOR_peak_18498 chr16 10923587 10923712 + 8.21529 NA Intergenic LTR5A|LTR|ERVK -11028 NM_001079512 780776 Hs.371576 NM_001079512 ENSG00000166676 TVP23A FAM18A|YDR084C trans-golgi network vesicle protein 23 homolog A (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_4226 chr1 164607360 164607511 + 8.21529 NA intron (NM_001204961, intron 2 of 7) intron (NM_001204961, intron 2 of 7) 78838 NM_002585 5087 Hs.557097 NM_002585 HPRD:08889 PBX1 - pre-B-cell leukemia homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_19032 chr16 30901119 30901235 + 8.21176 NA intron (NR_110940, intron 2 of 2) AluJo|SINE|Alu -4047 NR_031576 100313837 NR_031576 miRBase:MI0003892 MIR762 hsa-mir-762 microRNA 762 ncRNA 13-PTNLD9-TUMOR_peak_53125 chr9 35746786 35746918 + 8.21176 NA intron (NM_020944, intron 1 of 16) L2c|LINE|L2 2373 NM_020944 57704 Hs.443134 NM_020944 HPRD:13569 GBA2 SPG46 glucosidase, beta (bile acid) 2 protein-coding 13-PTNLD9-TUMOR_peak_6798 chr10 29879200 29879344 + 8.21176 NA intron (NM_003174, intron 3 of 35) intron (NM_003174, intron 3 of 35) 12003 NR_030634 100126327 NR_030634 miRBase:MI0005760 MIR938 MIRN938|hsa-mir-938 microRNA 938 ncRNA 13-PTNLD9-TUMOR_peak_27026 chr2 62080942 62081036 + 8.21176 NA intron (NR_037710, intron 1 of 5) CpG 289 NR_037710 84140 Hs.440466 NM_032180 ENSG00000170264 FAM161A RP28 family with sequence similarity 161, member A protein-coding 13-PTNLD9-TUMOR_peak_31927 chr21 11186499 11186693 + 8.21176 NA Intergenic HSATI|Satellite|Satellite -87659 NM_001187 574 Hs.545789 NM_001187 BAGE BAGE1|CT2.1 B melanoma antigen protein-coding 13-PTNLD9-TUMOR_peak_4483 chr1 175467349 175467480 + 8.21174 NA intron (NM_003285, intron 2 of 22) MLT1J2|LTR|ERVL-MaLR 245338 NM_003285 7143 Hs.659864 NM_003285 HPRD:03589 TNR TN-R tenascin R protein-coding 13-PTNLD9-TUMOR_peak_23789 chr19 6766047 6766286 + 8.21174 NA intron (NM_005490, intron 1 of 9) intron (NM_005490, intron 1 of 9) 1357 NM_005490 10045 Hs.439645 NM_005490 HPRD:05283 SH2D3A NSP1 SH2 domain containing 3A protein-coding 13-PTNLD9-TUMOR_peak_16186 chr14 70721476 70721601 + 8.21174 NA Intergenic LTR12C|LTR|ERV1 -7020 NR_003951 145241 Hs.712468 NR_003951 ENSG00000235812 ADAM21P1 ADAM21P ADAM metallopeptidase domain 21 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_54112 chr9 99145898 99146076 + 8.21174 NA promoter-TSS (NM_007001) promoter-TSS (NM_007001) 5 NR_104627 11046 Hs.494556 NM_007001 HPRD:16456 SLC35D2 HFRC1|SQV7L|UGTrel8|hfrc solute carrier family 35 (UDP-GlcNAc/UDP-glucose transporter), member D2 protein-coding 13-PTNLD9-TUMOR_peak_47081 chr7 24761501 24761596 + 8.21174 NA intron (NM_004403, intron 3 of 9) intron (NM_004403, intron 3 of 9) 35535 NM_001127453 1687 Hs.520708 NM_004403 HPRD:02996 DFNA5 ICERE-1 deafness, autosomal dominant 5 protein-coding 13-PTNLD9-TUMOR_peak_48360 chr7 95141144 95141257 + 8.21174 NA intron (NM_016116, intron 2 of 4) MIRb|SINE|MIR 25987 NM_145872 51666 Hs.602765 NM_016116 HPRD:05770 ASB4 ASB-4 ankyrin repeat and SOCS box containing 4 protein-coding 13-PTNLD9-TUMOR_peak_23769 chr19 6092500 6092692 + 8.21174 NA intron (NM_000635, intron 1 of 17) intron (NM_000635, intron 1 of 17) 18068 NM_000635 5990 Hs.465709 NM_000635 HPRD:00824 RFX2 - regulatory factor X, 2 (influences HLA class II expression) protein-coding 13-PTNLD9-TUMOR_peak_53134 chr9 35844999 35845146 + 8.21174 NA intron (NM_001042590, intron 6 of 12) L4|LINE|RTE -15199 NR_024006 92973 Hs.12509 NR_024006 LINC00950 - long intergenic non-protein coding RNA 950 ncRNA 13-PTNLD9-TUMOR_peak_13602 chr12 102802054 102802261 + 8.21174 NA intron (NM_001111284, intron 3 of 3) AmnSINE2|SINE|Deu 70272 NM_001111284 3479 Hs.160562 NM_000618 HPRD:00936 IGF1 IGF-I|IGF1A|IGFI insulin-like growth factor 1 (somatomedin C) protein-coding 13-PTNLD9-TUMOR_peak_30216 chr2 242754967 242755171 + 8.21174 NA intron (NM_001167602, intron 2 of 4) intron (NM_001167602, intron 2 of 4) 3042 NM_001167602 129807 Hs.551747 NM_080741 HPRD:12249 NEU4 - sialidase 4 protein-coding 13-PTNLD9-TUMOR_peak_13996 chr12 118709695 118709822 + 8.21174 NA intron (NM_016281, intron 1 of 20) intron (NM_016281, intron 1 of 20) 100992 NM_016281 51347 Hs.644420 NM_016281 HPRD:11620 TAOK3 DPK|JIK|MAP3K18 TAO kinase 3 protein-coding 13-PTNLD9-TUMOR_peak_52528 chr8 145693077 145693277 + 8.20769 NA intron (NM_145754, intron 6 of 16) intron (NM_145754, intron 6 of 16) 1439 NM_145754 90990 Hs.528713 NM_145754 HPRD:13916 KIFC2 - kinesin family member C2 protein-coding 13-PTNLD9-TUMOR_peak_49814 chr7 156433772 156433891 + 8.20769 NA promoter-TSS (NR_026865) promoter-TSS (NR_026865) 390 NM_001184996 140545 Hs.446194 NM_030936 HPRD:11517 RNF32 FKSG33|HSD15|LMBR2 ring finger protein 32 protein-coding 13-PTNLD9-TUMOR_peak_3125 chr1 121117109 121117238 + 8.20270 NA intron (NR_120535, intron 3 of 5).2 intron (NR_120535, intron 3 of 5).2 10021 NR_120535 100996712 Hs.497575 NM_001271887 SRGAP2D - SLIT-ROBO Rho GTPase activating protein 2D (pseudogene) pseudo 13-PTNLD9-TUMOR_peak_3341 chr1 145945037 145945466 + 8.19180 NA intron (NR_111936, intron 1 of 9).2 intron (NR_111936, intron 1 of 9).2 226 NR_111936 100034743 Hs.696575 NR_003377 ENSG00000215860 PDZK1P2 OTTHUMT00000038524|PDZK1P1 PDZ domain containing 1 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_7694 chr10 73517263 73517522 + 8.19180 NA intron (NM_022153, intron 3 of 6) intron (NM_022153, intron 3 of 6) 15945 NM_022153 64115 Hs.47382 NM_022153 HPRD:15160 C10orf54 B7-H5|B7H5|GI24|PP2135|SISP1 chromosome 10 open reading frame 54 protein-coding 13-PTNLD9-TUMOR_peak_52552 chr8 146078684 146078939 + 8.19180 NA promoter-TSS (NM_014066) promoter-TSS (NM_014066) 152 NM_001081003 28991 Hs.631856 NM_014066 HPRD:16301 COMMD5 HCARG COMM domain containing 5 protein-coding 13-PTNLD9-TUMOR_peak_18893 chr16 28751273 28751432 + 8.19180 NA Intergenic Intergenic -12404 NM_001287250 100507607 Hs.710214 NM_001287250 NPIPB9 - nuclear pore complex interacting protein family, member B9 protein-coding 13-PTNLD9-TUMOR_peak_9461 chr11 33644402 33644688 + 8.19180 NA intron (NM_012194, intron 15 of 19) intron (NM_012194, intron 15 of 19) 77741 NM_001166692 100131378 Hs.709466 NM_001166692 C11orf91 - chromosome 11 open reading frame 91 protein-coding 13-PTNLD9-TUMOR_peak_42113 chr5 133802082 133802550 + 8.19180 NA Intergenic Intergenic -31578 NR_105044 102546229 NR_105044 LOC102546229 - uncharacterized LOC102546229 ncRNA 13-PTNLD9-TUMOR_peak_7146 chr10 43633747 43634039 + 8.18880 NA promoter-TSS (NM_018590) promoter-TSS (NM_018590) 0 NM_018590 55454 Hs.657569 NM_018590 HPRD:11348 CSGALNACT2 CHGN2|GALNACT-2|GALNACT2 chondroitin sulfate N-acetylgalactosaminyltransferase 2 protein-coding 13-PTNLD9-TUMOR_peak_30631 chr20 24112972 24113217 + 8.18880 NA Intergenic LTR23|LTR|ERV1 -67309 NR_040102 400839 Hs.651965 NR_040102 ENSG00000230133 FLJ33581 - uncharacterized LOC400839 ncRNA 13-PTNLD9-TUMOR_peak_282 chr1 8434023 8434223 + 8.18880 NA intron (NM_001042682, intron 2 of 12) intron (NM_001042682, intron 2 of 12) 49624 NM_001042682 473 Hs.463041 NM_012102 HPRD:05566 RERE ARG|ARP|ATN1L|DNB1 arginine-glutamic acid dipeptide (RE) repeats protein-coding 13-PTNLD9-TUMOR_peak_55676 chrX 29352583 29352806 + 8.18880 NA intron (NM_014271, intron 3 of 10) SVA_D|Other|Other 747013 NM_014271 11141 Hs.658912 NM_014271 IL1RAPL1 IL1R8|IL1RAPL|MRX10|MRX21|MRX34|OPHN4|TIGIRR-2 interleukin 1 receptor accessory protein-like 1 protein-coding 13-PTNLD9-TUMOR_peak_25481 chr19 51472678 51472946 + 8.18880 NA promoter-TSS (NM_001012965) promoter-TSS (NM_001012965) 117 NM_002774 5653 Hs.79361 NM_002774 HPRD:04037 KLK6 Bssp|Klk7|PRSS18|PRSS9|SP59|hK6 kallikrein-related peptidase 6 protein-coding 13-PTNLD9-TUMOR_peak_33222 chr22 37893121 37893475 + 8.18880 NA intron (NM_014550, intron 11 of 19) L2b|LINE|L2 -10820 NM_002405 4242 Hs.517603 NM_002405 HPRD:03988 MFNG - MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase protein-coding 13-PTNLD9-TUMOR_peak_3921 chr1 156195339 156195452 + 8.18880 NA exon (NM_001199654, exon 2 of 5) exon (NM_001199654, exon 2 of 5) 12616 NM_001199663 100527963 Hs.530479 NM_001199661 ENSG00000260238 PMF1-BGLAP PMF1 PMF1-BGLAP readthrough protein-coding 13-PTNLD9-TUMOR_peak_3647 chr1 151906619 151906717 + 8.18880 NA Intergenic MLT1D|LTR|ERVL-MaLR -24307 NM_053055 117145 Hs.164070 NM_053055 THEM4 CTMP thioesterase superfamily member 4 protein-coding 13-PTNLD9-TUMOR_peak_31485 chr20 49962188 49962357 + 8.18880 NA Intergenic Intergenic 107242 NR_036162 100422889 NR_036162 MIR3194 - microRNA 3194 ncRNA 13-PTNLD9-TUMOR_peak_38685 chr4 79550620 79550741 + 8.18869 NA Intergenic LTR9|LTR|ERV1 -16468 NR_038308 100505702 Hs.235795 NR_038303 LINC01094 - long intergenic non-protein coding RNA 1094 ncRNA 13-PTNLD9-TUMOR_peak_23662 chr19 2491531 2491722 + 8.18869 NA Intergenic L2a|LINE|L2 15503 NM_015675 4616 Hs.110571 NM_015675 HPRD:05382 GADD45B GADD45BETA|MYD118 growth arrest and DNA-damage-inducible, beta protein-coding 13-PTNLD9-TUMOR_peak_18364 chr16 4419039 4419231 + 8.18869 NA intron (NM_024535, intron 9 of 27) intron (NM_024535, intron 9 of 27) -2714 NM_138440 114990 Hs.372579 NM_138440 HPRD:10587 VASN SLITL2 vasorin protein-coding 13-PTNLD9-TUMOR_peak_53528 chr9 70481009 70481188 + 8.18869 NA intron (NM_001024916, intron 4 of 12) AluJo|SINE|Alu 9113 NM_001024916 220869 Hs.355950 NM_001024916 HPRD:14134 CBWD5 DC36 COBW domain containing 5 protein-coding 13-PTNLD9-TUMOR_peak_6942 chr10 35702118 35702384 + 8.18673 NA intron (NM_001282853, intron 2 of 10) intron (NM_001282853, intron 2 of 10) 76449 NM_001282853 219771 Hs.14745 NM_145012 HPRD:10700 CCNY C10orf9|CBCP1|CCNX|CFP1 cyclin Y protein-coding 13-PTNLD9-TUMOR_peak_21901 chr17 70462419 70462607 + 8.18673 NA intron (NR_036488, intron 1 of 3) intron (NR_036488, intron 1 of 3) 126430 NR_036488 100499467 Hs.157726 NR_036488 LINC00673 LINC00511 long intergenic non-protein coding RNA 673 ncRNA 13-PTNLD9-TUMOR_peak_17520 chr15 68644885 68645054 + 8.18673 NA intron (NM_001004439, intron 7 of 29) intron (NM_001004439, intron 7 of 29) 74828 NM_015322 10116 Hs.362733 NM_015322 FEM1B F1A-ALPHA|F1AA|FEM1-beta fem-1 homolog b (C. elegans) protein-coding 13-PTNLD9-TUMOR_peak_44150 chr6 24887772 24887932 + 8.18673 NA intron (NM_001286446, intron 1 of 13) intron (NM_001286446, intron 1 of 13) -10259 NM_001286447 9750 Hs.559459 NM_014722 HPRD:12881 FAM65B C6orf32|DIFF40|DIFF48|MYONAP|PL48 family with sequence similarity 65, member B protein-coding 13-PTNLD9-TUMOR_peak_32584 chr21 46890994 46891475 + 8.18673 NA intron (NM_030582, intron 2 of 41) intron (NM_030582, intron 2 of 41) -6946 NR_106873 102465489 NR_106873 MIR6815 hsa-mir-6815 microRNA 6815 ncRNA 13-PTNLD9-TUMOR_peak_46920 chr7 16123696 16123855 + 8.18673 NA Intergenic Intergenic -126336 NR_038946 100506025 Hs.649029 NR_038946 ENSG00000229688 ISPD-AS1 - ISPD antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_38152 chr4 27383129 27383243 + 8.18673 NA Intergenic L1PA2|LINE|L1 520873 NM_020860 57620 Hs.744950 NM_020860 HPRD:11609 STIM2 - stromal interaction molecule 2 protein-coding 13-PTNLD9-TUMOR_peak_13362 chr12 75284089 75284214 + 8.18673 NA Intergenic Intergenic 319377 NM_001260498 3747 Hs.27214 NM_139136 HPRD:08883 KCNC2 KV3.2 potassium voltage-gated channel, Shaw-related subfamily, member 2 protein-coding 13-PTNLD9-TUMOR_peak_10987 chr11 95901965 95902064 + 8.18673 NA intron (NM_032427, intron 1 of 4) intron (NM_032427, intron 1 of 4) -172588 NR_036125 100422991 NR_036125 miRBase:MI0014197 MIR1260B - microRNA 1260b ncRNA 13-PTNLD9-TUMOR_peak_39699 chr4 154678691 154678802 + 8.18673 NA intron (NM_173662, intron 1 of 8) intron (NM_173662, intron 1 of 8) 2641 NM_173662 285533 Hs.388364 NM_173662 HPRD:15262 RNF175 - ring finger protein 175 protein-coding 13-PTNLD9-TUMOR_peak_24745 chr19 35607065 35607216 + 8.18673 NA intron (NM_001136009, intron 1 of 5) intron (NM_001136009, intron 1 of 5) 408 NM_021910 5349 Hs.301350 NM_005971 HPRD:05410 FXYD3 MAT8|PLML FXYD domain containing ion transport regulator 3 protein-coding 13-PTNLD9-TUMOR_peak_35714 chr3 125848521 125848656 + 8.18673 NA intron (NM_001270364, intron 14 of 22) intron (NM_001270364, intron 14 of 22) 26105 NR_046602 100874204 Hs.742339 NR_046602 ENSG00000250218 ALDH1L1-AS1 - ALDH1L1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_34543 chr3 49481561 49481665 + 8.18673 NA Intergenic LTR23|LTR|ERV1 -14856 NM_032316 84276 Hs.191460 NM_032316 HPRD:17631 NICN1 - nicolin 1 protein-coding 13-PTNLD9-TUMOR_peak_14841 chr13 71865158 71865567 + 8.18673 NA Intergenic Intergenic 276089 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 13-PTNLD9-TUMOR_peak_31587 chr20 52641848 52641976 + 8.18673 NA intron (NM_003657, intron 4 of 11) intron (NM_003657, intron 4 of 11) 43112 NR_039913 100616225 NR_039913 miRBase:MI0017397 MIR4756 - microRNA 4756 ncRNA 13-PTNLD9-TUMOR_peak_43354 chr5 180633902 180634025 + 8.18329 NA Intergenic Intergenic -1670 NM_203293 81786 Hs.487412 NM_033342 HPRD:11648 TRIM7 GNIP|RNF90 tripartite motif containing 7 protein-coding 13-PTNLD9-TUMOR_peak_37979 chr4 10098256 10098423 + 8.18329 NA intron (NM_005112, intron 2 of 11) intron (NM_005112, intron 2 of 11) -18023 NR_036090 100423011 NR_036090 MIR3138 - microRNA 3138 ncRNA 13-PTNLD9-TUMOR_peak_10219 chr11 65249102 65249303 + 8.18329 NA Intergenic Intergenic -16031 NR_002819 378938 Hs.621695 NR_002819 ENSG00000251562 MALAT1 HCN|LINC00047|MALAT-1|NCRNA00047|NEAT2|PRO2853|mascRNA metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_24418 chr19 18700276 18700445 + 8.18329 NA exon (NM_001100419, exon 3 of 5) exon (NM_001100419, exon 3 of 5) 865 NM_001100418 55049 Hs.655317 NM_017967 HPRD:07948 C19orf60 - chromosome 19 open reading frame 60 protein-coding 13-PTNLD9-TUMOR_peak_3241 chr1 144520370 144520538 + 8.18196 NA intron (NM_001278267, intron 52 of 130) CpG 92265 NR_003242 767846 Hs.657186 NR_003242 PFN1P2 C1orf152|COAS3 profilin 1 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_24278 chr19 16567624 16567729 + 8.17987 NA intron (NM_001258374, intron 1 of 23) intron (NM_001258374, intron 1 of 23) 15147 NM_001258374 58513 Hs.654639 NM_021235 HPRD:09445 EPS15L1 EPS15R epidermal growth factor receptor pathway substrate 15-like 1 protein-coding 13-PTNLD9-TUMOR_peak_25253 chr19 48102244 48102524 + 8.17978 NA Intergenic Intergenic -9069 NM_015711 29998 Hs.97244 NM_015711 HPRD:09296 GLTSCR1 - glioma tumor suppressor candidate region gene 1 protein-coding 13-PTNLD9-TUMOR_peak_43304 chr5 179223119 179223444 + 8.17978 NA exon (NM_145867, exon 5 of 5) exon (NM_145867, exon 5 of 5) 2065 NR_031598 100302156 NR_031598 MIR1229 MIRN1229|hsa-mir-1229 microRNA 1229 ncRNA 13-PTNLD9-TUMOR_peak_28136 chr2 113977678 113977822 + 8.17978 NA exon (NM_003466, exon 11 of 12) exon (NM_003466, exon 11 of 12) -15354 NR_047570 654433 Hs.656660 NR_015377 ENSG00000189223 PAX8-AS1 - PAX8 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_15017 chr13 101264445 101264685 + 8.17308 NA intron (NM_001286453, intron 14 of 15) intron (NM_001286453, intron 14 of 15) -23519 NM_001195087 87769 Hs.350868 NM_033110 GGACT A2LD1 gamma-glutamylamine cyclotransferase protein-coding 13-PTNLD9-TUMOR_peak_33129 chr22 31667521 31667781 + 8.17308 NA intron (NM_001031801, intron 11 of 14) L3|LINE|CR1 20869 NM_001135911 113791 Hs.26670 NM_052880 HPRD:17518 PIK3IP1 HGFL|hHGFL(S) phosphoinositide-3-kinase interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_51280 chr8 90769842 90770287 + 8.17308 NA promoter-TSS (NM_003821) promoter-TSS (NM_003821) 89 NM_003821 8767 Hs.103755 NM_003821 HPRD:04585 RIPK2 CARD3|CARDIAK|CCK|GIG30|RICK|RIP2 receptor-interacting serine-threonine kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_19412 chr16 56666421 56666543 + 8.17308 NA promoter-TSS (NM_176870) promoter-TSS (NM_176870) -52 NM_176870 4499 Hs.647370 NM_176870 MT1M MT-1M|MT-IM|MT1|MT1K metallothionein 1M protein-coding 13-PTNLD9-TUMOR_peak_49757 chr7 153555445 153555693 + 8.17308 NA Intergenic Intergenic -28613 NM_001039350 1804 Hs.490684 NM_001936 HPRD:00525 DPP6 DPPX|VF2 dipeptidyl-peptidase 6 protein-coding 13-PTNLD9-TUMOR_peak_54526 chr9 117050580 117050814 + 8.17308 NA intron (NM_032888, intron 41 of 60) intron (NM_032888, intron 41 of 60) -34606 NM_000607 5004 Hs.522356 NM_000607 HPRD:00724 ORM1 AGP-A|AGP1|HEL-S-153w|ORM orosomucoid 1 protein-coding 13-PTNLD9-TUMOR_peak_29619 chr2 205186710 205186965 + 8.17308 NA Intergenic Intergenic -223679 NM_152526 117583 Hs.657382 NM_057177 HPRD:09795 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3LC|PAR3beta|Par3Lb par-3 family cell polarity regulator beta protein-coding 13-PTNLD9-TUMOR_peak_6260 chr10 1198757 1199107 + 8.17308 NA Intergenic Intergenic -6776 NR_015376 399706 Hs.721191 NM_001010910 HPRD:17990 LINC00200 C10orf139|NCRNA00200 long intergenic non-protein coding RNA 200 ncRNA 13-PTNLD9-TUMOR_peak_37100 chr3 186926004 186926242 + 8.17308 NA promoter-TSS (NR_110052) promoter-TSS (NR_110052) -706 NR_110052 101929106 Hs.640145 NR_110052 ENSG00000198491 LOC101929106 - uncharacterized LOC101929106 ncRNA 13-PTNLD9-TUMOR_peak_2493 chr1 93975588 93975707 + 8.17308 NA intron (NM_001024948, intron 2 of 13) L1PA3|LINE|L1 61959 NM_001024948 54874 Hs.134060 NM_017737 HPRD:12317 FNBP1L C1orf39|TOCA1 formin binding protein 1-like protein-coding 13-PTNLD9-TUMOR_peak_338 chr1 9579644 9579777 + 8.17308 NA Intergenic AluY|SINE|Alu -19818 NM_032315 84275 Hs.568613 NM_032315 SLC25A33 BMSC-MCP|PNC1 solute carrier family 25 (pyrimidine nucleotide carrier), member 33 protein-coding 13-PTNLD9-TUMOR_peak_42964 chr5 169999455 169999596 + 8.17308 NA intron (NM_014592, intron 1 of 7) intron (NM_014592, intron 1 of 7) 68485 NM_001278340 30820 Hs.484111 NM_014592 HPRD:06879 KCNIP1 KCHIP1|VABP Kv channel interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_53341 chr9 44669080 44669183 + 8.17308 NA Intergenic Intergenic 284546 NR_121564 101927827 Hs.738704 NR_121564 ENSG00000229311 LOC101927827 - uncharacterized LOC101927827 ncRNA 13-PTNLD9-TUMOR_peak_27299 chr2 74413048 74413421 + 8.17308 NA Intergenic Intergenic -7239 NM_018221 55233 Hs.602092 NM_018221 MOB1A C2orf6|MATS1|MOB1|MOBK1B|MOBKL1B|Mob4B MOB kinase activator 1A protein-coding 13-PTNLD9-TUMOR_peak_27797 chr2 99422747 99422957 + 8.17308 NA intron (NM_207362, intron 7 of 9) intron (NM_207362, intron 7 of 9) -75263 NM_012214 11320 Hs.177576 NM_012214 HPRD:06860 MGAT4A GNT-IV|GNT-IVA|GnT-4a mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A protein-coding 13-PTNLD9-TUMOR_peak_17486 chr15 67134670 67134933 + 8.17308 NA Intergenic Intergenic 133871 NM_001142861 4091 Hs.153863 NM_005585 HPRD:04240 SMAD6 AOVD2|HsT17432|MADH6|MADH7 SMAD family member 6 protein-coding 13-PTNLD9-TUMOR_peak_6034 chr1 238648428 238648588 + 8.17308 NA intron (NR_015407, intron 1 of 1) MER61-int|LTR|ERV1 809 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 - long intergenic non-protein coding RNA 1139 ncRNA 13-PTNLD9-TUMOR_peak_53268 chr9 41210347 41210450 + 8.17308 NA Intergenic Intergenic 101587 NR_026803 401507 Hs.553802 NM_001012278 HPRD:17394 FAM74A1 FAM74A5 family with sequence similarity 74, member A1 ncRNA 13-PTNLD9-TUMOR_peak_10305 chr11 66375147 66375277 + 8.17308 NA Intergenic Intergenic -8841 NM_001198846 100526737 Hs.523822 NM_001198845 ENSG00000173933 RBM14-RBM4 COAZ RBM14-RBM4 readthrough protein-coding 13-PTNLD9-TUMOR_peak_38712 chr4 82342717 82342897 + 8.17308 NA Intergenic Intergenic 50275 NM_001300735 153020 Hs.591696 NM_152545 HPRD:17955 RASGEF1B GPIG4 RasGEF domain family, member 1B protein-coding 13-PTNLD9-TUMOR_peak_3033 chr1 117814673 117814933 + 8.17308 NA Intergenic LTR51|LTR|ERV1 -61221 NR_045604 79679 Hs.546434 NM_024626 HPRD:06429 VTCN1 B7-H4|B7H4|B7S1|B7X|B7h.5|PRO1291|VCTN1 V-set domain containing T cell activation inhibitor 1 protein-coding 13-PTNLD9-TUMOR_peak_12016 chr12 6980840 6981016 + 8.16435 NA TTS (NM_000365) TTS (NM_000365) 1521 NM_001146316 84727 Hs.479856 NM_032641 HPRD:13610 SPSB2 GRCC9|SSB2 splA/ryanodine receptor domain and SOCS box containing 2 protein-coding 13-PTNLD9-TUMOR_peak_14250 chr12 125412407 125412622 + 8.16435 NA Intergenic Intergenic 12421 NR_049820 100847004 NR_049820 miRBase:MI0018167 MIR5188 - microRNA 5188 ncRNA 13-PTNLD9-TUMOR_peak_6045 chr1 239973391 239973555 + 8.16211 NA intron (NM_000740, intron 3 of 4) intron (NM_000740, intron 3 of 4) 89699 NR_046582 100873984 Hs.199475 NR_046582 CHRM3-AS1 - CHRM3 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_17998 chr15 92485910 92486146 + 8.16211 NA intron (NM_013272, intron 2 of 9) AluSz|SINE|Alu 89090 NM_013272 28232 Hs.311187 NM_013272 HPRD:07502 SLCO3A1 OATP-D|OATP3A1|OATPD|SLC21A11 solute carrier organic anion transporter family, member 3A1 protein-coding 13-PTNLD9-TUMOR_peak_13165 chr12 65074145 65074245 + 8.16077 NA intron (NR_040718, intron 1 of 3) L2b|LINE|L2 -57810 NR_037515 100500856 NR_037515 MIR548Z - microRNA 548z ncRNA 13-PTNLD9-TUMOR_peak_24424 chr19 18811397 18811599 + 8.16077 NA intron (NM_001098482, intron 1 of 14) intron (NM_001098482, intron 1 of 14) 17073 NM_001098482 23373 Hs.371096 NM_015321 HPRD:06339 CRTC1 MECT1|TORC-1|TORC1|WAMTP1 CREB regulated transcription coactivator 1 protein-coding 13-PTNLD9-TUMOR_peak_22219 chr17 78098540 78098786 + 8.16077 NA Intergenic Intergenic 22319 NM_014740 9775 Hs.389649 NM_014740 HPRD:06482 EIF4A3 DDX48|MUK34|NMP265|NUK34|RCPS|eIF4AIII eukaryotic translation initiation factor 4A3 protein-coding 13-PTNLD9-TUMOR_peak_25569 chr19 53290384 53290510 + 8.16077 NA promoter-TSS (NM_198457) promoter-TSS (NM_198457) -413 NM_198457 162966 Hs.696848 NM_198457 ZNF600 KR-ZNF1 zinc finger protein 600 protein-coding 13-PTNLD9-TUMOR_peak_29623 chr2 205410006 205410505 + 8.16077 NA promoter-TSS (NM_152526) promoter-TSS (NM_152526) -261 NM_152526 117583 Hs.657382 NM_057177 HPRD:09795 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3LC|PAR3beta|Par3Lb par-3 family cell polarity regulator beta protein-coding 13-PTNLD9-TUMOR_peak_20150 chr16 89785782 89785955 + 8.15545 NA promoter-TSS (NR_110128) promoter-TSS (NR_110128) -908 NR_110128 92822 Hs.290154 NM_152287 HPRD:12235 ZNF276 CENP-Z|CENPZ|ZADT|ZFP276|ZNF477 zinc finger protein 276 protein-coding 13-PTNLD9-TUMOR_peak_30007 chr2 232476640 232476803 + 8.15492 NA Intergenic MIR|SINE|MIR 19146 NM_152614 165100 Hs.98104 NM_152614 HPRD:14602 C2orf57 - chromosome 2 open reading frame 57 protein-coding 13-PTNLD9-TUMOR_peak_23339 chr18 57590479 57590599 + 8.15460 NA Intergenic Intergenic 23347 NM_021127 5366 Hs.96 NM_021127 HPRD:12002 PMAIP1 APR|NOXA phorbol-12-myristate-13-acetate-induced protein 1 protein-coding 13-PTNLD9-TUMOR_peak_42733 chr5 153903419 153903588 + 8.15460 NA Intergenic Intergenic -45679 NM_004821 9421 Hs.152531 NM_004821 HPRD:03871 HAND1 Hxt|Thing1|bHLHa27|eHand heart and neural crest derivatives expressed 1 protein-coding 13-PTNLD9-TUMOR_peak_5578 chr1 224517646 224517933 + 8.15460 NA exon (NM_002533, exon 1 of 23) exon (NM_002533, exon 1 of 23) 102 NM_001243147 4931 Hs.497867 NM_002533 HPRD:03887 NVL - nuclear VCP-like protein-coding 13-PTNLD9-TUMOR_peak_44031 chr6 19418090 19418198 + 8.15460 NA Intergenic Intergenic -237433 NR_110860 101928519 Hs.551771 NR_110860 LOC101928519 - uncharacterized LOC101928519 ncRNA 13-PTNLD9-TUMOR_peak_36668 chr3 169531618 169531772 + 8.15460 NA Intergenic LTR1|LTR|ERV1 -1121 NM_153353 151827 Hs.591289 NM_153353 HPRD:14519 LRRC34 - leucine rich repeat containing 34 protein-coding 13-PTNLD9-TUMOR_peak_3828 chr1 154999238 154999333 + 8.15460 NA intron (NM_144622, intron 8 of 14) intron (NM_144622, intron 8 of 14) 6972 NM_144622 127579 Hs.591491 NM_144622 HPRD:08739 DCST2 - DC-STAMP domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_22910 chr18 32820473 32820567 + 8.15460 NA promoter-TSS (NM_032347) promoter-TSS (NM_032347) -474 NM_032347 84307 Hs.591061 NM_032347 HPRD:18335 ZNF397 ZNF47|ZSCAN15 zinc finger protein 397 protein-coding 13-PTNLD9-TUMOR_peak_28900 chr2 161504546 161505165 + 8.15460 NA Intergenic MER52D|LTR|ERV1 -154537 NM_002897 5937 Hs.470412 NM_002897 HPRD:03814 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif, single stranded interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_54082 chr9 97768670 97768837 + 8.15460 NA intron (NM_032823, intron 11 of 14) intron (NM_032823, intron 11 of 14) -58879 NR_106729 102466518 NR_106729 MIR6081 hsa-mir-6081 microRNA 6081 ncRNA 13-PTNLD9-TUMOR_peak_3276 chr1 145114505 145114771 + 8.15099 NA intron (NM_004892, intron 4 of 5) intron (NM_004892, intron 4 of 5) 18231 NM_004892 9554 Hs.632438 NM_004892 SEC22B ERS-24|SEC22L1 SEC22 vesicle trafficking protein homolog B (S. cerevisiae) (gene/pseudogene) protein-coding 13-PTNLD9-TUMOR_peak_51231 chr8 86375496 86375646 + 8.14340 NA promoter-TSS (NM_000067) promoter-TSS (NM_000067) -288 NR_121633 100996348 Hs.606624 NR_121630 LOC100996348 - uncharacterized LOC100996348 ncRNA 13-PTNLD9-TUMOR_peak_2600 chr1 97743547 97743722 + 8.14340 NA intron (NR_046590, intron 2 of 4) intron (NR_046590, intron 2 of 4) 182155 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_23467 chr18 72874548 72874679 + 8.14340 NA Intergenic Intergenic 46668 NM_175907 284273 Hs.465433 NM_175907 ZADH2 - zinc binding alcohol dehydrogenase domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_28731 chr2 152231063 152231190 + 8.14340 NA intron (NM_007115, intron 5 of 5) intron (NM_007115, intron 5 of 5) 4759 NR_110248 101929319 Hs.639241 NR_110248 LOC101929319 - uncharacterized LOC101929319 ncRNA 13-PTNLD9-TUMOR_peak_6573 chr10 17117612 17117801 + 8.14340 NA intron (NM_001081, intron 17 of 66) intron (NM_001081, intron 17 of 66) 54110 NM_001081 8029 Hs.166206 NM_001081 HPRD:04296 CUBN IFCR|MGA1|gp280 cubilin (intrinsic factor-cobalamin receptor) protein-coding 13-PTNLD9-TUMOR_peak_31963 chr21 17056478 17056624 + 8.14340 NA Intergenic LTR81|LTR|Gypsy -45793 NM_013396 29761 Hs.743994 NM_013396 HPRD:05296 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 13-PTNLD9-TUMOR_peak_13694 chr12 106526916 106527132 + 8.14340 NA intron (NM_014840, intron 1 of 6) intron (NM_014840, intron 1 of 6) 6787 NM_014840 9891 Hs.524692 NM_014840 HPRD:12171 NUAK1 ARK5 NUAK family, SNF1-like kinase, 1 protein-coding 13-PTNLD9-TUMOR_peak_54536 chr9 117250006 117250106 + 8.14340 NA intron (NM_015404, intron 1 of 11) intron (NM_015404, intron 1 of 11) 15439 NM_001083885 25861 Hs.93836 NM_015404 HPRD:09718 DFNB31 CIP98|PDZD7B|USH2D|WHRN|WI deafness, autosomal recessive 31 protein-coding 13-PTNLD9-TUMOR_peak_35894 chr3 130035080 130035280 + 8.14340 NA Intergenic Intergenic -29179 NM_001278298 256076 Hs.205403 NM_153264 HPRD:08196 COL6A5 COL29A1|VWA4 collagen, type VI, alpha 5 protein-coding 13-PTNLD9-TUMOR_peak_13397 chr12 79814094 79814249 + 8.14340 NA intron (NM_005639, intron 9 of 10) intron (NM_005639, intron 9 of 10) 1134 NR_031700 100302136 NR_031700 MIR1252 MIRN1252|hsa-mir-1252 microRNA 1252 ncRNA 13-PTNLD9-TUMOR_peak_19813 chr16 78027639 78027797 + 8.14340 NA Intergenic MER41C|LTR|ERV1 -28725 NM_005752 10143 Hs.177936 NM_005752 HPRD:13072 CLEC3A CLECSF1 C-type lectin domain family 3, member A protein-coding 13-PTNLD9-TUMOR_peak_55627 chrX 20534460 20534557 + 8.14340 NA Intergenic Intergenic -249758 NM_004586 6197 Hs.445387 NM_004586 HPRD:02092 RPS6KA3 CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2 ribosomal protein S6 kinase, 90kDa, polypeptide 3 protein-coding 13-PTNLD9-TUMOR_peak_7912 chr10 86254182 86254276 + 8.14340 NA intron (NM_001284240, intron 9 of 9) MER41B|LTR|ERV1 69291 NM_001284242 54462 Hs.461988 NM_018999 HPRD:13832 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine-rich protein 2 protein-coding 13-PTNLD9-TUMOR_peak_33412 chr22 44844298 44844553 + 8.14340 NA Intergenic Intergenic 5218 NR_109966 101927526 Hs.339290 NR_109966 ENSG00000232655 LOC101927526 - uncharacterized LOC101927526 ncRNA 13-PTNLD9-TUMOR_peak_53874 chr9 89763384 89763480 + 8.14340 NA promoter-TSS (NM_001001709) promoter-TSS (NM_001001709) -127 NM_001001709 401535 Hs.657740 NM_001001709 HPRD:16988 C9orf170 - chromosome 9 open reading frame 170 protein-coding 13-PTNLD9-TUMOR_peak_52074 chr8 131245205 131245312 + 8.14340 NA intron (NM_018482, intron 4 of 29) intron (NM_018482, intron 4 of 29) 63521 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_45364 chr6 54582714 54582826 + 8.14340 NA Intergenic Intergenic -128799 NM_001010872 222584 Hs.152423 NM_001010872 FAM83B C6orf143 family with sequence similarity 83, member B protein-coding 13-PTNLD9-TUMOR_peak_20818 chr17 29421796 29422038 + 8.14340 NA promoter-TSS (NM_001042492) promoter-TSS (NM_001042492) -28 NM_000267 4763 Hs.113577 NM_000267 HPRD:01203 NF1 NFNS|VRNF|WSS neurofibromin 1 protein-coding 13-PTNLD9-TUMOR_peak_8246 chr10 105032817 105033043 + 8.14340 NA Intergenic Intergenic -3990 NM_032727 9118 Hs.500916 NM_032727 HPRD:05628 INA NEF5|NF-66|TXBP-1 internexin neuronal intermediate filament protein, alpha protein-coding 13-PTNLD9-TUMOR_peak_37347 chr3 194561842 194561956 + 8.14340 NA Intergenic Intergenic 132749 NR_037891 100507391 Hs.590099 NR_037891 ENSG00000237222 LOC100507391 - uncharacterized LOC100507391 ncRNA 13-PTNLD9-TUMOR_peak_56415 chrX 118925589 118925981 + 8.14340 NA promoter-TSS (NM_001000) promoter-TSS (NM_001000) -163 NM_001000 6170 Hs.300141 NM_001000 HPRD:03546 RPL39 L39|RPL39P42|RPL39_23_1806 ribosomal protein L39 protein-coding 13-PTNLD9-TUMOR_peak_2911 chr1 113850527 113850646 + 8.14340 NA Intergenic Intergenic -82889 NM_001142782 260425 Hs.486189 NM_020965 HPRD:11290 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_19535 chr16 66550744 66550991 + 8.13583 NA intron (NM_001271935, intron 6 of 7) intron (NM_001271935, intron 6 of 7) 32861 NM_001272050 7084 Hs.512619 NM_004614 HPRD:01770 TK2 MTDPS2|MTTK thymidine kinase 2, mitochondrial protein-coding 13-PTNLD9-TUMOR_peak_1148 chr1 36808478 36808728 + 8.13480 NA intron (NM_001282546, intron 10 of 10) intron (NM_001282546, intron 10 of 10) -18848 NM_018166 55194 Hs.87016 NM_018166 HPRD:07690 EVA1B C1orf78|FAM176B eva-1 homolog B (C. elegans) protein-coding 13-PTNLD9-TUMOR_peak_4817 chr1 191290509 191290603 + 8.13480 NA Intergenic L1PA4|LINE|L1 696536 NR_033922 440704 Hs.518802 NR_033922 ENSG00000231175 LOC440704 - uncharacterized LOC440704 ncRNA 13-PTNLD9-TUMOR_peak_30930 chr20 35443179 35443441 + 8.13480 NA intron (NM_080627, intron 5 of 14) AluSx1|SINE|Alu -41080 NM_001145318 79980 Hs.632268 NM_024918 HPRD:16455 DSN1 C20orf172|KNL3|MIS13|dJ469A13.2|hKNL-3 DSN1, MIS12 kinetochore complex component protein-coding 13-PTNLD9-TUMOR_peak_5414 chr1 219964628 219964874 + 8.13480 NA Intergenic Intergenic -81868 NR_002753 26828 NR_002753 ENSG00000199377 RNU5F-1 RNU5F|U5F RNA, U5F small nuclear 1 snRNA 13-PTNLD9-TUMOR_peak_9456 chr11 33482947 33483186 + 8.13480 NA Intergenic Intergenic -80811 NM_012194 25758 Hs.502266 NM_012194 ENSG00000110427 KIAA1549L C11orf41|C11orf69|G2 KIAA1549-like protein-coding 13-PTNLD9-TUMOR_peak_18864 chr16 28079504 28079632 + 8.13480 NA Intergenic MER102b|DNA|hAT-Charlie -4738 NM_001109763 146395 Hs.91910 NM_144675 HPRD:14464 GSG1L PRO19651 GSG1-like protein-coding 13-PTNLD9-TUMOR_peak_27907 chr2 105719629 105719793 + 8.13480 NA promoter-TSS (NR_110227) promoter-TSS (NR_110227) -309 NR_110227 101927492 Hs.469537 NR_110227 LOC101927492 - uncharacterized LOC101927492 ncRNA 13-PTNLD9-TUMOR_peak_42237 chr5 137998742 137998993 + 8.13480 NA Intergenic Intergenic -87549 NM_004134 3313 Hs.184233 NM_004134 HPRD:02770 HSPA9 CSA|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74 heat shock 70kDa protein 9 (mortalin) protein-coding 13-PTNLD9-TUMOR_peak_27223 chr2 70781266 70781460 + 8.13480 NA promoter-TSS (NM_003236) promoter-TSS (NM_003236) -216 NM_001099691 7039 Hs.170009 NM_003236 HPRD:07522 TGFA TFGA transforming growth factor, alpha protein-coding 13-PTNLD9-TUMOR_peak_27518 chr2 87893382 87893549 + 8.13480 NA Intergenic Intergenic -35809 NR_039634 100616499 NR_039634 miRBase:MI0016775 MIR4435-1 - microRNA 4435-1 ncRNA 13-PTNLD9-TUMOR_peak_15797 chr14 54307294 54307436 + 8.13480 NA Intergenic Intergenic 107837 NR_049843 100847076 NR_049843 miRBase:MI0019135 MIR5580 - microRNA 5580 ncRNA 13-PTNLD9-TUMOR_peak_12112 chr12 10357808 10358068 + 8.13480 NA Intergenic Intergenic -7551 NM_031412 23710 Hs.524250 NM_031412 HPRD:07601 GABARAPL1 APG8-LIKE|APG8L|ATG8|ATG8B|ATG8L|GEC1 GABA(A) receptor-associated protein like 1 protein-coding 13-PTNLD9-TUMOR_peak_512 chr1 16339866 16339968 + 8.13480 NA TTS (NM_014424) TTS (NM_014424) 5368 NM_014424 27129 Hs.502612 NM_014424 HPRD:13684 HSPB7 cvHSP heat shock 27kDa protein family, member 7 (cardiovascular) protein-coding 13-PTNLD9-TUMOR_peak_43257 chr5 177894855 177895051 + 8.13480 NA intron (NM_173465, intron 2 of 28) MER113|DNA|hAT-Charlie 122603 NM_173465 91522 Hs.660026 NM_173465 HPRD:16733 COL23A1 - collagen, type XXIII, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_44761 chr6 35270472 35270643 + 8.13480 NA intron (NM_022047, intron 1 of 10) MER5A|DNA|hAT-Charlie 4962 NM_022047 50619 Hs.15476 NM_022047 HPRD:10869 DEF6 IBP|SLAT|SWAP70L differentially expressed in FDCP 6 homolog (mouse) protein-coding 13-PTNLD9-TUMOR_peak_35562 chr3 122328988 122329151 + 8.13480 NA intron (NM_001113523, intron 2 of 11) (TCTCTG)n|Simple_repeat|Simple_repeat -5456 NM_152615 165631 Hs.120250 NM_152615 HPRD:08811 PARP15 ARTD7|BAL3|pART7 poly (ADP-ribose) polymerase family, member 15 protein-coding 13-PTNLD9-TUMOR_peak_39732 chr4 157855059 157855348 + 8.13480 NA intron (NR_036641, intron 1 of 6) MER82|DNA|TcMar-Tigger 37343 NM_016205 56034 Hs.570855 NM_016205 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 13-PTNLD9-TUMOR_peak_38914 chr4 95762350 95762487 + 8.13480 NA intron (NM_001203, intron 1 of 12) L1PA3|LINE|L1 83290 NM_001203 658 Hs.598475 NM_001203 HPRD:04457 BMPR1B ALK-6|ALK6|CDw293 bone morphogenetic protein receptor, type IB protein-coding 13-PTNLD9-TUMOR_peak_25089 chr19 44205563 44205740 + 8.13480 NA Intergenic L2a|LINE|L2 -14563 NM_019612 56269 Hs.515444 NM_019612 HPRD:15200 IRGC CINEMA|IFGGE|IRGC1|Iigp5|R30953_1 immunity-related GTPase family, cinema protein-coding 13-PTNLD9-TUMOR_peak_37703 chr4 4076733 4076864 + 8.13480 NA Intergenic LTR5A|LTR|ERVK -119650 NR_024253 348926 Hs.591720 NR_024253 FAM86EP - family with sequence similarity 86, member A pseudogene pseudo 13-PTNLD9-TUMOR_peak_39956 chr4 184331106 184331387 + 8.13480 NA Intergenic Intergenic -34543 NM_017632 55602 Hs.644077 NM_017632 HPRD:16683 CDKN2AIP CARF CDKN2A interacting protein protein-coding 13-PTNLD9-TUMOR_peak_12978 chr12 56376439 56376635 + 8.13480 NA intron (NM_001252037, intron 1 of 4) intron (NM_001252037, intron 1 of 4) 8742 NM_001252037 5869 Hs.157659 NM_002868 HPRD:01544 RAB5B - RAB5B, member RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_23685 chr19 2983727 2983919 + 8.13480 NA intron (NM_001143986, intron 5 of 16) L2a|LINE|L2 6287 NM_001143986 79816 Hs.334507 NM_024760 HPRD:18195 TLE6 GRG6 transducin-like enhancer of split 6 protein-coding 13-PTNLD9-TUMOR_peak_47838 chr7 72249253 72249366 + 8.13480 NA intron (NM_001145440, intron 6 of 14) intron (NM_001145440, intron 6 of 14) 49504 NM_001145440 441250 Hs.488614 NM_001145440 ENSG00000254184 TYW1B LINC00069|NCRNA00069|RSAFD2 tRNA-yW synthesizing protein 1 homolog B (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_20481 chr17 10018518 10018660 + 8.13480 NA intron (NM_201433, intron 1 of 13) intron (NM_201433, intron 1 of 13) -78525 NM_201432 8522 Hs.462214 NM_003644 HPRD:16011 GAS7 MLL/GAS7 growth arrest-specific 7 protein-coding 13-PTNLD9-TUMOR_peak_48087 chr7 76876660 76876767 + 8.13480 NA intron (NM_020879, intron 4 of 18) intron (NM_020879, intron 4 of 18) -47563 NM_006682 10875 Hs.520989 NM_006682 HPRD:16098 FGL2 T49|pT49 fibrinogen-like 2 protein-coding 13-PTNLD9-TUMOR_peak_12676 chr12 48214552 48214655 + 8.13435 NA promoter-TSS (NM_015401) promoter-TSS (NM_015401) -840 NM_015401 51564 Hs.200063 NM_015401 HPRD:09133 HDAC7 HD7A|HDAC7A histone deacetylase 7 protein-coding 13-PTNLD9-TUMOR_peak_5939 chr1 235099044 235099218 + 8.13083 NA Intergenic Intergenic 192121 NR_002956 677802 Hs.744743 NR_002956 SNORA14B ACA14b small nucleolar RNA, H/ACA box 14B snoRNA 13-PTNLD9-TUMOR_peak_49646 chr7 150810979 150811170 + 8.13041 NA intron (NM_001042535, intron 1 of 8) intron (NM_001042535, intron 1 of 8) 27275 NM_001042535 116988 Hs.647075 NM_031946 HPRD:16707 AGAP3 AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3 ArfGAP with GTPase domain, ankyrin repeat and PH domain 3 protein-coding 13-PTNLD9-TUMOR_peak_33247 chr22 38294857 38295152 + 8.12999 NA Intergenic Intergenic -7151 NM_033386 85377 Hs.517610 NM_033386 HPRD:11363 MICALL1 MICAL-L1|MIRAB13 MICAL-like 1 protein-coding 13-PTNLD9-TUMOR_peak_7311 chr10 49517899 49518017 + 8.12999 NA intron (NM_001278547, intron 1 of 11) intron (NM_001278547, intron 1 of 11) 3276 NM_001278547 5599 Hs.138211 NM_002750 HPRD:03100 MAPK8 JNK|JNK-46|JNK1|JNK1A2|JNK21B1/2|PRKM8|SAPK1|SAPK1c mitogen-activated protein kinase 8 protein-coding 13-PTNLD9-TUMOR_peak_34771 chr3 58221022 58221205 + 8.12999 NA Intergenic Intergenic -2146 NM_020676 57406 Hs.476454 NM_020676 HPRD:12407 ABHD6 - abhydrolase domain containing 6 protein-coding 13-PTNLD9-TUMOR_peak_42278 chr5 139053671 139053872 + 8.12999 NA intron (NM_016463, intron 1 of 2) intron (NM_016463, intron 1 of 2) 25470 NM_016463 51523 Hs.744933 NM_016463 HPRD:13105 CXXC5 CF5|RINF|WID CXXC finger protein 5 protein-coding 13-PTNLD9-TUMOR_peak_24457 chr19 19489136 19489272 + 8.12999 NA Intergenic AluY|SINE|Alu -7438 NM_017660 54815 Hs.118964 NM_017660 HPRD:11741 GATAD2A p66alpha GATA zinc finger domain containing 2A protein-coding 13-PTNLD9-TUMOR_peak_34432 chr3 46155938 46156131 + 8.12999 NA Intergenic HERVP71A-int|LTR|ERV1 -87055 NM_005283 2829 Hs.248116 NM_005283 HPRD:02774 XCR1 CCXCR1|GPR5 chemokine (C motif) receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_29335 chr2 190405396 190405517 + 8.12619 NA Intergenic Intergenic 40081 NM_014585 30061 Hs.643005 NM_014585 HPRD:05229 SLC40A1 FPN1|HFE4|IREG1|MST079|MTP1|SLC11A3 solute carrier family 40 (iron-regulated transporter), member 1 protein-coding 13-PTNLD9-TUMOR_peak_8212 chr10 104153781 104153891 + 8.12619 NA promoter-TSS (NM_001077494) promoter-TSS (NM_001077494) -31 NM_001288724 4791 Hs.73090 NM_002502 HPRD:01239 NFKB2 CVID10|H2TF1|LYT-10|LYT10|NF-kB2|p105|p52 nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100) protein-coding 13-PTNLD9-TUMOR_peak_24100 chr19 13068008 13068138 + 8.12619 NA promoter-TSS (NM_052850) promoter-TSS (NM_052850) -5 NM_052850 90480 Hs.515164 NM_052850 HPRD:05519 GADD45GIP1 CKBBP2|CKbetaBP2|CRIF1|MRP-L59|PLINP|PLINP-1|PRG6|Plinp1 growth arrest and DNA-damage-inducible, gamma interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_13186 chr12 65997806 65997949 + 8.12619 NA intron (NR_120434, intron 2 of 4) MIR3|SINE|MIR 38275 NR_120433 100507065 Hs.591038 NR_120431 ENSG00000250748 LOC100507065 - uncharacterized LOC100507065 ncRNA 13-PTNLD9-TUMOR_peak_28570 chr2 136633276 136633573 + 8.12619 NA intron (NM_005915, intron 1 of 16) CpG 623 NM_005915 4175 Hs.444118 NM_005915 HPRD:03485 MCM6 MCG40308|Mis5|P105MCM minichromosome maintenance complex component 6 protein-coding 13-PTNLD9-TUMOR_peak_54505 chr9 116327175 116327377 + 8.12619 NA promoter-TSS (NM_134427) promoter-TSS (NM_134427) 42 NM_134427 5998 Hs.494875 NM_017790 HPRD:03720 RGS3 C2PA|RGP3 regulator of G-protein signaling 3 protein-coding 13-PTNLD9-TUMOR_peak_7689 chr10 73486129 73486315 + 8.12619 NA intron (NM_001171930, intron 29 of 30) intron (NM_001171930, intron 29 of 30) -6644 NM_001164375 414152 Hs.568788 NM_001164375 ENSG00000214688 C10orf105 - chromosome 10 open reading frame 105 protein-coding 13-PTNLD9-TUMOR_peak_42580 chr5 148862383 148862570 + 8.12198 NA Intergenic L2c|LINE|L2 52267 NR_029686 406937 NR_029686 miRBase:MI0000461 MIR145 MIRN145|miR-145|miRNA145 microRNA 145 ncRNA 13-PTNLD9-TUMOR_peak_20769 chr17 27229956 27230352 + 8.12049 NA promoter-TSS (NM_144683) promoter-TSS (NM_144683) -65 NM_144683 147015 Hs.631760 NM_144683 HPRD:14488 DHRS13 SDR7C5 dehydrogenase/reductase (SDR family) member 13 protein-coding 13-PTNLD9-TUMOR_peak_19087 chr16 31888879 31889040 + 8.12049 NA intron (NM_001265588, intron 2 of 4) MER92B|LTR|ERV1 3880 NM_001265588 10308 Hs.460645 NM_003414 HPRD:06883 ZNF267 HZF2 zinc finger protein 267 protein-coding 13-PTNLD9-TUMOR_peak_7198 chr10 45496460 45496828 + 8.12049 NA promoter-TSS (NM_001039380) promoter-TSS (NM_001039380) -174 NM_001039380 220979 Hs.707791 NM_001039380 ENSG00000165511 C10orf25 - chromosome 10 open reading frame 25 protein-coding 13-PTNLD9-TUMOR_peak_2794 chr1 110453080 110453223 + 8.12049 NA promoter-TSS (NM_000757) promoter-TSS (NM_000757) -82 NM_000757 1435 Hs.173894 NM_000757 HPRD:00388 CSF1 CSF-1|MCSF colony stimulating factor 1 (macrophage) protein-coding 13-PTNLD9-TUMOR_peak_30995 chr20 37230360 37230624 + 8.12049 NA promoter-TSS (NM_001164431) promoter-TSS (NM_001164431) -85 NM_001164431 343578 Hs.451997 NM_001164431 ENSG00000124143 ARHGAP40 C20orf95|dJ1100H13.4 Rho GTPase activating protein 40 protein-coding 13-PTNLD9-TUMOR_peak_50002 chr8 7258316 7258493 + 8.12049 NA Intergenic AluSz6|SINE|Alu 15950 NM_001205266 100289462 Hs.740237 NM_001205266 ENSG00000177257 DEFB4B DEFB4P defensin, beta 4B protein-coding 13-PTNLD9-TUMOR_peak_10225 chr11 65274747 65275329 + 8.11563 NA Intergenic Intergenic -7770 NR_049839 100847035 NR_049839 MIR548AR - microRNA 548ar ncRNA 13-PTNLD9-TUMOR_peak_22330 chr17 80255657 80255952 + 8.11136 NA Intergenic Intergenic 19676 NM_006137 924 Hs.36972 NM_006137 HPRD:01732 CD7 GP40|LEU-9|TP41|Tp40 CD7 molecule protein-coding 13-PTNLD9-TUMOR_peak_36556 chr3 158487088 158487197 + 8.11136 NA Intergenic Intergenic -32573 NR_110328 64747 Hs.58663 NM_022736 HPRD:07851 MFSD1 SMAP4 major facilitator superfamily domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_46832 chr7 6522995 6523173 + 8.10974 NA intron (NM_001100603, intron 1 of 3) CpG 765 NM_001100603 11014 Hs.654552 NM_006854 HPRD:06598 KDELR2 ELP-1|ERD2.2 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2 protein-coding 13-PTNLD9-TUMOR_peak_37369 chr3 195273136 195273258 + 8.10974 NA Intergenic Intergenic -2973 NM_006241 5504 Hs.535731 NM_006241 HPRD:03478 PPP1R2 IPP-2|IPP2 protein phosphatase 1, regulatory (inhibitor) subunit 2 protein-coding 13-PTNLD9-TUMOR_peak_44538 chr6 31461682 31461789 + 8.10621 NA promoter-TSS (NM_001289160) promoter-TSS (NM_001289160) -923 NM_001289160 4277 Hs.731446 NM_005931 HPRD:03894 MICB PERB11.2 MHC class I polypeptide-related sequence B protein-coding 13-PTNLD9-TUMOR_peak_20158 chr16 89913596 89913759 + 8.10621 NA intron (NM_032451, intron 2 of 14) intron (NM_032451, intron 2 of 14) 18770 NM_032451 84501 Hs.461786 NM_032451 HPRD:18099 SPIRE2 Spir-2 spire-type actin nucleation factor 2 protein-coding 13-PTNLD9-TUMOR_peak_9286 chr11 19849382 19849566 + 8.10034 NA intron (NM_182964, intron 1 of 37) AluJo|SINE|Alu -67845 NR_039843 100616426 NR_039843 miRBase:MI0017327 MIR4694 - microRNA 4694 ncRNA 13-PTNLD9-TUMOR_peak_13390 chr12 78333869 78334096 + 8.10034 NA intron (NM_001024383, intron 1 of 39) intron (NM_001024383, intron 1 of 39) 108913 NM_014903 89795 Hs.655301 NM_014903 HPRD:10114 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 13-PTNLD9-TUMOR_peak_24619 chr19 29896018 29896163 + 8.10034 NA intron (NR_040029, intron 3 of 9) intron (NR_040029, intron 3 of 9) 120569 NR_040029 284395 Hs.631601 NR_040029 ENSG00000264515 LOC284395 - uncharacterized LOC284395 ncRNA 13-PTNLD9-TUMOR_peak_1313 chr1 40974323 40974675 + 8.10034 NA promoter-TSS (NM_022774) promoter-TSS (NM_022774) 66 NM_022774 64789 Hs.59584 NM_022774 HPRD:07955 EXO5 C1orf176|DEM1|Exo V|hExo5 exonuclease 5 protein-coding 13-PTNLD9-TUMOR_peak_4872 chr1 197781039 197781180 + 8.10034 NA Intergenic Intergenic -36486 NR_125340 163486 Hs.125056 NM_019049 HPRD:13303 DENND1B C1ORF18|C1orf218|FAM31B DENN/MADD domain containing 1B protein-coding 13-PTNLD9-TUMOR_peak_26017 chr2 8680173 8680392 + 8.10034 NA Intergenic Intergenic 43640 NR_110257 101929567 Hs.634706 NR_110257 ENSG00000236008 LOC101929567 - uncharacterized LOC101929567 ncRNA 13-PTNLD9-TUMOR_peak_9133 chr11 13282289 13282413 + 8.10034 NA Intergenic L2c|LINE|L2 -16923 NM_001030273 406 Hs.65734 NM_001178 HPRD:03973 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator-like protein-coding 13-PTNLD9-TUMOR_peak_19726 chr16 71692793 71692891 + 8.10034 NA intron (NM_001289003, intron 12 of 17) intron (NM_001289003, intron 12 of 17) 32786 NM_001017967 91862 Hs.513706 NM_052858 HPRD:14365 MARVELD3 MARVD3|MRVLDC3 MARVEL domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_50321 chr8 22852116 22852255 + 8.10034 NA intron (NM_001160036, intron 3 of 11) intron (NM_001160036, intron 3 of 11) -1176 NM_001160037 23221 Hs.372688 NM_015178 HPRD:06300 RHOBTB2 DBC2 Rho-related BTB domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_4725 chr1 183912156 183912465 + 8.10034 NA intron (NM_015101, intron 10 of 11) intron (NM_015101, intron 10 of 11) 94553 NM_015101 23127 Hs.387995 NM_015101 HPRD:13583 COLGALT2 C1orf17|GLT25D2 collagen beta(1-O)galactosyltransferase 2 protein-coding 13-PTNLD9-TUMOR_peak_912 chr1 30998969 30999141 + 8.10034 NA Intergenic Intergenic -192564 NR_034182 100129196 Hs.659751 NR_034182 ENSG00000186056 MATN1-AS1 - MATN1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_17581 chr15 71184750 71185144 + 8.10034 NA promoter-TSS (NM_020147) promoter-TSS (NM_020147) 165 NM_017691 54839 Hs.12692 NM_017691 HPRD:07880 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 13-PTNLD9-TUMOR_peak_54065 chr9 97609873 97610063 + 8.10034 NA intron (NM_032823, intron 5 of 14) intron (NM_032823, intron 5 of 14) 37724 NR_031755 100313780 NR_031755 MIR2278 - microRNA 2278 ncRNA 13-PTNLD9-TUMOR_peak_26894 chr2 48724108 48724328 + 8.10034 NA intron (NR_024188, intron 16 of 21) MER21A|LTR|ERVL -32846 NM_001198593 286749 Hs.732016 NM_172311 HPRD:18496 STON1-GTF2A1L SALF STON1-GTF2A1L readthrough protein-coding 13-PTNLD9-TUMOR_peak_40018 chr4 186157113 186157223 + 8.10034 NA intron (NM_031953, intron 1 of 18) LTR22A|LTR|ERVK 25884 NM_031953 83891 Hs.369091 NM_031953 HPRD:15414 SNX25 SBBI31 sorting nexin 25 protein-coding 13-PTNLD9-TUMOR_peak_22231 chr17 78503805 78504042 + 8.10034 NA Intergenic AluJb|SINE|Alu -14702 NM_020761 57521 Hs.133044 NM_020761 HPRD:06184 RPTOR KOG1|Mip1 regulatory associated protein of MTOR, complex 1 protein-coding 13-PTNLD9-TUMOR_peak_50043 chr8 8430385 8430646 + 8.10034 NA Intergenic Intergenic -129151 NM_194284 137075 Hs.183617 NM_194284 HPRD:13069 CLDN23 CLDNL|hCG1646163 claudin 23 protein-coding 13-PTNLD9-TUMOR_peak_29021 chr2 169868809 169868976 + 8.10034 NA intron (NM_003742, intron 5 of 27) intron (NM_003742, intron 5 of 27) 18941 NM_003742 8647 Hs.658439 NM_003742 HPRD:04436 ABCB11 ABC16|BRIC2|BSEP|PFIC-2|PFIC2|PGY4|SPGP ATP-binding cassette, sub-family B (MDR/TAP), member 11 protein-coding 13-PTNLD9-TUMOR_peak_22222 chr17 78149313 78149419 + 8.10034 NA intron (NR_047566, intron 1 of 21) intron (NR_047566, intron 1 of 21) -2941 NM_001257970 79092 Hs.675480 NM_024110 HPRD:06235 CARD14 BIMP2|CARMA2|PRP|PSORS2|PSS1 caspase recruitment domain family, member 14 protein-coding 13-PTNLD9-TUMOR_peak_32516 chr21 45300180 45300377 + 8.10034 NA intron (NM_020132, intron 1 of 9) intron (NM_020132, intron 1 of 9) 15162 NM_020132 56894 Hs.248785 NM_020132 HPRD:10637 AGPAT3 LPAAT-GAMMA1|LPAAT3 1-acylglycerol-3-phosphate O-acyltransferase 3 protein-coding 13-PTNLD9-TUMOR_peak_9732 chr11 47561803 47561918 + 8.10034 NA intron (NM_006560, intron 1 of 13) intron (NM_006560, intron 1 of 13) 12932 NM_006560 10658 Hs.595333 NM_006560 HPRD:03046 CELF1 BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50 CUGBP, Elav-like family member 1 protein-coding 13-PTNLD9-TUMOR_peak_53091 chr9 34760582 34760708 + 8.10034 NA Intergenic Intergenic -31110 NM_001141917 259308 Hs.522093 NM_001141917 ENSG00000205108 FAM205A C9orf144B family with sequence similarity 205, member A protein-coding 13-PTNLD9-TUMOR_peak_51010 chr8 59572115 59572347 + 8.10034 NA promoter-TSS (NM_001144772) promoter-TSS (NM_001144772) 173 NM_003580 8439 Hs.372000 NM_003580 HPRD:09117 NSMAF FAN neutral sphingomyelinase (N-SMase) activation associated factor protein-coding 13-PTNLD9-TUMOR_peak_53865 chr9 89347592 89347695 + 8.10034 NA Intergenic Intergenic 214461 NM_002048 2619 Hs.65029 NM_002048 HPRD:00747 GAS1 - growth arrest-specific 1 protein-coding 13-PTNLD9-TUMOR_peak_29618 chr2 205010100 205010205 + 8.10034 NA Intergenic Intergenic 208681 NM_012092 29851 Hs.56247 NM_012092 HPRD:09196 ICOS AILIM|CD278|CVID1 inducible T-cell co-stimulator protein-coding 13-PTNLD9-TUMOR_peak_53093 chr9 34979450 34979663 + 8.10034 NA 3' UTR (NM_015297, exon 8 of 8) 3' UTR (NM_015297, exon 8 of 8) 9820 NR_109756 101926900 Hs.545814 NR_109756 DNAJB5-AS1 - DNAJB5 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_26182 chr2 15814357 15814559 + 8.10034 NA Intergenic L1MB8|LINE|L1 -16448 NR_110201 101926966 Hs.502835 NR_110201 ENSG00000231031 LOC101926966 - uncharacterized LOC101926966 ncRNA 13-PTNLD9-TUMOR_peak_53159 chr9 36419905 36420169 + 8.10034 NA Intergenic Intergenic -18842 NM_194330 152006 Hs.333503 NM_022781 HPRD:11519 RNF38 - ring finger protein 38 protein-coding 13-PTNLD9-TUMOR_peak_11293 chr11 114952839 114953135 + 8.10034 NA Intergenic Intergenic 403787 NM_182495 120406 Hs.446760 NM_182495 HPRD:08055 NXPE2 FAM55B neurexophilin and PC-esterase domain family, member 2 protein-coding 13-PTNLD9-TUMOR_peak_22175 chr17 76553935 76554110 + 8.10034 NA intron (NM_173628, intron 14 of 80) L2a|LINE|L2 19454 NM_173628 8632 Hs.375975 NM_003727 HPRD:16830 DNAH17 DNAHL1|DNEL2 dynein, axonemal, heavy chain 17 protein-coding 13-PTNLD9-TUMOR_peak_40384 chr5 14435607 14435849 + 8.10034 NA intron (NM_007118, intron 34 of 56) L1MC4a|LINE|L1 -146163 NM_019018 54491 Hs.155085 NM_019018 FAM105A NET20 family with sequence similarity 105, member A protein-coding 13-PTNLD9-TUMOR_peak_22488 chr18 3817026 3817273 + 8.10034 NA intron (NM_001242761, intron 4 of 11) intron (NM_001242761, intron 4 of 11) 28209 NM_001242766 9229 Hs.594640 NM_004746 HPRD:09260 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1|hGKAP discs, large (Drosophila) homolog-associated protein 1 protein-coding 13-PTNLD9-TUMOR_peak_5098 chr1 203539014 203539125 + 8.10034 NA Intergenic Intergenic -56846 NM_001001396 493 Hs.343522 NM_001684 HPRD:00159 ATP2B4 ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x ATPase, Ca++ transporting, plasma membrane 4 protein-coding 13-PTNLD9-TUMOR_peak_53645 chr9 75791506 75791719 + 8.10034 NA Intergenic MER41-int|LTR|ERV1 24831 NM_000700 301 Hs.494173 NM_000700 HPRD:01060 ANXA1 ANX1|LPC1 annexin A1 protein-coding 13-PTNLD9-TUMOR_peak_53767 chr9 84326940 84327150 + 8.09874 NA intron (NR_109772, intron 1 of 3) intron (NR_109772, intron 1 of 3) 22417 NR_109772 101927502 Hs.528628 NR_109772 ENSG00000233926 LOC101927502 - uncharacterized LOC101927502 ncRNA 13-PTNLD9-TUMOR_peak_33650 chr3 8674355 8674579 + 8.09874 NA intron (NM_001256748, intron 4 of 11) intron (NM_001256748, intron 4 of 11) 12017 NR_046358 51066 Hs.736935 NM_015931 HPRD:11267 SSUH2 C3orf32|SSU-2|fls485 ssu-2 homolog (C. elegans) protein-coding 13-PTNLD9-TUMOR_peak_33500 chr22 50311699 50311849 + 8.09874 NA promoter-TSS (NM_001135101) promoter-TSS (NM_001135101) 332 NM_024105 79087 Hs.526711 NM_024105 ALG12 CDG1G|ECM39|PP14673|hALG12 ALG12, alpha-1,6-mannosyltransferase protein-coding 13-PTNLD9-TUMOR_peak_31451 chr20 49254900 49255116 + 8.09874 NA intron (NM_001290268, intron 1 of 21) intron (NM_001290268, intron 1 of 21) -1553 NM_080829 140876 Hs.372578 NM_080829 HPRD:12757 FAM65C C20orf175|C20orf176|dJ530I15.2|dJ530I15.3 family with sequence similarity 65, member C protein-coding 13-PTNLD9-TUMOR_peak_3827 chr1 154989958 154990208 + 8.09874 NA TTS (NM_144622) TTS (NM_144622) 14977 NM_001252406 51043 Hs.729279 NM_001252406 HPRD:09625 ZBTB7B THPOK|ZBTB15|ZFP-67|ZFP67|ZNF857B|c-KROX|hcKROX zinc finger and BTB domain containing 7B protein-coding 13-PTNLD9-TUMOR_peak_46782 chr7 5458260 5458552 + 8.09776 NA intron (NM_001080495, intron 2 of 29) intron (NM_001080495, intron 2 of 29) 4771 NM_001080495 84629 Hs.520638 NM_001013722 ENSG00000182095 TNRC18 CAGL79|TNRC18A trinucleotide repeat containing 18 protein-coding 13-PTNLD9-TUMOR_peak_48167 chr7 82073289 82073421 + 8.09776 NA promoter-TSS (NM_000722) promoter-TSS (NM_000722) -324 NM_000722 781 Hs.282151 NM_000722 HPRD:00245 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium channel, voltage-dependent, alpha 2/delta subunit 1 protein-coding 13-PTNLD9-TUMOR_peak_43429 chr6 1598265 1598425 + 8.09713 NA Intergenic Intergenic -7421 NR_125804 101927703 Hs.607964 NR_125804 FOXCUT LINC01379|TCONS_00011636 FOXC1 upstream transcript (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_2288 chr1 83521166 83521285 + 8.09713 NA Intergenic Intergenic -69334 NR_110633 101927498 NR_110632 ENSG00000236268 LINC01361 - long intergenic non-protein coding RNA 1361 ncRNA 13-PTNLD9-TUMOR_peak_12639 chr12 46554389 46554695 + 8.09713 NA Intergenic Intergenic 105736 NM_001278389 81539 Hs.533770 NM_030674 HPRD:12245 SLC38A1 ATA1|NAT2|SAT1|SNAT1 solute carrier family 38, member 1 protein-coding 13-PTNLD9-TUMOR_peak_40518 chr5 31195156 31195323 + 8.09713 NA intron (NM_004932, intron 1 of 11) intron (NM_004932, intron 1 of 11) 1477 NM_004932 1004 Hs.124776 NM_004932 HPRD:04305 CDH6 CAD6|KCAD cadherin 6, type 2, K-cadherin (fetal kidney) protein-coding 13-PTNLD9-TUMOR_peak_2639 chr1 100513006 100513110 + 8.09713 NA intron (NM_033055, intron 1 of 11) AluSp|SINE|Alu 9269 NM_033055 64645 Hs.124156 NM_033055 HPRD:11022 HIAT1 - hippocampus abundant transcript 1 protein-coding 13-PTNLD9-TUMOR_peak_16654 chr14 104334976 104335196 + 8.09713 NA Intergenic Intergenic 21028 NR_038436 145216 Hs.578091 NR_038436 ENSG00000258735 LINC00637 - long intergenic non-protein coding RNA 637 ncRNA 13-PTNLD9-TUMOR_peak_4522 chr1 178001085 178001232 + 8.09713 NA intron (NR_037167, intron 5 of 9) intron (NR_037167, intron 5 of 9) 5984 NR_037167 730102 Hs.733192 NR_037167 ENSG00000242193 LOC730102 - quinone oxidoreductase-like protein 2 pseudogene pseudo 13-PTNLD9-TUMOR_peak_29840 chr2 219575937 219576093 + 8.09713 NA intron (NM_014640, intron 1 of 19) CpG 447 NM_014640 9654 Hs.471405 NM_014640 HPRD:15586 TTLL4 - tubulin tyrosine ligase-like family, member 4 protein-coding 13-PTNLD9-TUMOR_peak_37966 chr4 9954197 9954511 + 8.09713 NA intron (NM_001001290, intron 6 of 12) AluJb|SINE|Alu 68760 NM_020041 56606 Hs.656895 NM_020041 HPRD:05848 SLC2A9 GLUT9|GLUTX|UAQTL2|URATv1 solute carrier family 2 (facilitated glucose transporter), member 9 protein-coding 13-PTNLD9-TUMOR_peak_8380 chr10 116066503 116066682 + 8.09713 NA intron (NM_001001936, intron 10 of 18) intron (NM_001001936, intron 10 of 18) 67579 NM_001272046 340706 Hs.197741 NM_198496 VWA2 AMACO|CCSP-2|NET42 von Willebrand factor A domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_43811 chr6 12288499 12288843 + 8.08896 NA Intergenic Intergenic -1858 NM_001168319 1906 Hs.511899 NM_001955 HPRD:07030 EDN1 ARCND3|ET1|HDLCQ7|PPET1|QME endothelin 1 protein-coding 13-PTNLD9-TUMOR_peak_7399 chr10 54078981 54079151 + 8.08640 NA Intergenic Intergenic 5025 NM_012242 22943 Hs.40499 NM_012242 HPRD:05544 DKK1 DKK-1|SK dickkopf WNT signaling pathway inhibitor 1 protein-coding 13-PTNLD9-TUMOR_peak_36260 chr3 143616500 143616631 + 8.08640 NA Intergenic Intergenic -49192 NM_173653 285195 Hs.302257 NM_173653 HPRD:12226 SLC9A9 AUTS16|NHE9 solute carrier family 9, subfamily A (NHE9, cation proton antiporter 9), member 9 protein-coding 13-PTNLD9-TUMOR_peak_5853 chr1 233085893 233086031 + 8.08640 NA promoter-TSS (NM_032324) promoter-TSS (NM_032324) -408 NM_032324 84284 Hs.642715 NM_032324 NTPCR C1orf57|HCR-NTPase nucleoside-triphosphatase, cancer-related protein-coding 13-PTNLD9-TUMOR_peak_13158 chr12 64954879 64955065 + 8.08640 NA Intergenic Intergenic -49321 NR_040718 283349 Hs.643605 NM_178169 HPRD:08448 RASSF3 RASSF5 Ras association (RalGDS/AF-6) domain family member 3 protein-coding 13-PTNLD9-TUMOR_peak_42001 chr5 130594535 130594682 + 8.08640 NA Intergenic L2a|LINE|L2 -5094 NM_001038702 56990 Hs.508829 NM_020240 HPRD:16695 CDC42SE2 SPEC2 CDC42 small effector 2 protein-coding 13-PTNLD9-TUMOR_peak_24467 chr19 19726031 19726171 + 8.08394 NA intron (NR_038198, intron 1 of 7) AluJb|SINE|Alu 3624 NM_025245 80714 Hs.466257 NM_025245 HPRD:16287 PBX4 - pre-B-cell leukemia homeobox 4 protein-coding 13-PTNLD9-TUMOR_peak_6412 chr10 7299355 7299533 + 8.08394 NA intron (NM_001018039, intron 7 of 20) intron (NM_001018039, intron 7 of 20) 151859 NM_001018039 57713 Hs.407983 NM_001018039 ENSG00000198879 SFMBT2 - Scm-like with four mbt domains 2 protein-coding 13-PTNLD9-TUMOR_peak_3443 chr1 148531713 148531852 + 8.07682 NA intron (NR_104217, intron 2 of 17) intron (NR_104217, intron 2 of 17) -26406 NM_001170755 284565 Hs.523572 NM_173638 HPRD:14710 NBPF15 AB14|AG3|NBPF16 neuroblastoma breakpoint family, member 15 protein-coding 13-PTNLD9-TUMOR_peak_53687 chr9 78936221 78936446 + 8.06903 NA intron (NM_001190482, intron 29 of 36) intron (NM_001190482, intron 29 of 36) 73111 NM_018339 55312 Hs.37558 NM_018339 HPRD:17969 RFK RIFK riboflavin kinase protein-coding 13-PTNLD9-TUMOR_peak_42656 chr5 150143026 150143282 + 8.06903 NA Intergenic Intergenic -4497 NM_001135643 51164 Hs.675564 NM_016221 HPRD:13126 DCTN4 DYN4|P62 dynactin 4 (p62) protein-coding 13-PTNLD9-TUMOR_peak_48500 chr7 99862475 99862619 + 8.06903 NA intron (NR_028038, intron 1 of 6) MLT1F|LTR|ERVL-MaLR 7308 NR_028040 352954 Hs.556063 NM_178831 HPRD:17030 GATS STAG3OS GATS, stromal antigen 3 opposite strand protein-coding 13-PTNLD9-TUMOR_peak_15238 chr14 20877548 20877679 + 8.06768 NA intron (NM_007110, intron 1 of 54) L2c|LINE|L2 3966 NM_007110 7011 Hs.508835 NM_007110 HPRD:03404 TEP1 TLP1|TP1|TROVE1|VAULT2|p240 telomerase-associated protein 1 protein-coding 13-PTNLD9-TUMOR_peak_17136 chr15 42787747 42787914 + 8.06768 NA 5' UTR (NM_130798, exon 1 of 7) 5' UTR (NM_130798, exon 1 of 7) 326 NM_130798 8773 Hs.511149 NM_003825 HPRD:03962 SNAP23 HsT17016|SNAP-23|SNAP23A|SNAP23B synaptosomal-associated protein, 23kDa protein-coding 13-PTNLD9-TUMOR_peak_19263 chr16 48047444 48047548 + 8.06768 NA Intergenic Intergenic -126455 NR_110649 100507534 Hs.407601 NR_110649 ENSG00000261325 LOC100507534 - uncharacterized LOC100507534 ncRNA 13-PTNLD9-TUMOR_peak_35153 chr3 98241474 98241587 + 8.06768 NA 5' UTR (NM_001040199, exon 1 of 5) 5' UTR (NM_001040199, exon 1 of 5) 380 NM_001040199 56650 Hs.531371 NM_019895 HPRD:12822 CLDND1 C3orf4|GENX-3745 claudin domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_41495 chr5 89825963 89826097 + 8.06768 NA promoter-TSS (NM_198273) promoter-TSS (NM_198273) -629 NM_001286812 116068 Hs.136235 NM_198273 ENSG00000176018 LYSMD3 - LysM, putative peptidoglycan-binding, domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_4485 chr1 175489373 175489701 + 8.06768 NA intron (NM_003285, intron 2 of 22) intron (NM_003285, intron 2 of 22) 223215 NM_003285 7143 Hs.659864 NM_003285 HPRD:03589 TNR TN-R tenascin R protein-coding 13-PTNLD9-TUMOR_peak_30651 chr20 25038002 25038362 + 8.06612 NA intron (NM_001252677, intron 1 of 11) CpG 636 NM_001252675 84532 Hs.529353 NM_032501 HPRD:12413 ACSS1 ACAS2L|ACECS1|AceCS2L acyl-CoA synthetase short-chain family member 1 protein-coding 13-PTNLD9-TUMOR_peak_19954 chr16 84875492 84875839 + 8.06612 NA intron (NM_031476, intron 2 of 14) intron (NM_031476, intron 2 of 14) 22078 NM_031476 83716 Hs.513779 NM_031476 HPRD:13186 CRISPLD2 CRISP11|LCRISP2 cysteine-rich secretory protein LCCL domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_10734 chr11 78024541 78024704 + 8.05865 NA intron (NM_080491, intron 1 of 9) intron (NM_080491, intron 1 of 9) 28304 NM_012296 9846 Hs.429434 NM_012296 HPRD:05866 GAB2 - GRB2-associated binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_27912 chr2 105907521 105907779 + 8.05865 NA intron (NM_004257, intron 4 of 11) MLT1A|LTR|ERVL-MaLR 38521 NM_001142621 9392 Hs.446350 NM_004257 HPRD:06948 TGFBRAP1 TRAP-1|TRAP1 transforming growth factor, beta receptor associated protein 1 protein-coding 13-PTNLD9-TUMOR_peak_16068 chr14 67826947 67827161 + 8.05865 NA promoter-TSS (NM_004094) promoter-TSS (NM_004094) 20 NM_004094 1965 Hs.151777 NM_004094 HPRD:04881 EIF2S1 EIF-2|EIF-2A|EIF-2alpha|EIF2|EIF2A eukaryotic translation initiation factor 2, subunit 1 alpha, 35kDa protein-coding 13-PTNLD9-TUMOR_peak_38275 chr4 48019225 48019472 + 8.05865 NA intron (NM_207330, intron 1 of 5) CpG 557 NM_207330 152519 Hs.134190 NM_207330 NIPAL1 NPAL1 NIPA-like domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_38015 chr4 14427733 14427832 + 8.05865 NA Intergenic L1PA4|LINE|L1 314190 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 13-PTNLD9-TUMOR_peak_29977 chr2 230786760 230787007 + 8.05865 NA promoter-TSS (NM_004238) promoter-TSS (NM_004238) -158 NM_001284214 9320 Hs.572642 NM_004238 HPRD:05144 TRIP12 TRIP-12|ULF thyroid hormone receptor interactor 12 protein-coding 13-PTNLD9-TUMOR_peak_41901 chr5 124244718 124244836 + 8.05865 NA Intergenic Intergenic -127747 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 13-PTNLD9-TUMOR_peak_32480 chr21 44760726 44760872 + 8.05865 NA Intergenic Intergenic -8880 NR_103713 100126693 Hs.473952 NR_103713 LINC00322 C21orf136|NCRNA00322 long intergenic non-protein coding RNA 322 ncRNA 13-PTNLD9-TUMOR_peak_1728 chr1 49325252 49325381 + 8.05865 NA intron (NM_032785, intron 6 of 13) MLT1I|LTR|ERVL-MaLR -82769 NM_024603 79656 Hs.475348 NM_024603 BEND5 C1orf165 BEN domain containing 5 protein-coding 13-PTNLD9-TUMOR_peak_22349 chr17 80509805 80509917 + 8.05865 NA intron (NM_004514, intron 1 of 8) intron (NM_004514, intron 1 of 8) 32267 NM_004514 3607 Hs.591140 NM_004514 HPRD:00982 FOXK2 ILF|ILF-1|ILF1 forkhead box K2 protein-coding 13-PTNLD9-TUMOR_peak_44940 chr6 39891166 39891360 + 8.05816 NA intron (NR_033233, intron 2 of 8) intron (NR_033233, intron 2 of 8) 4192 NM_005943 4337 Hs.357128 NM_005942 HPRD:04749 MOCS1 MIG11|MOCOD|MOCODA molybdenum cofactor synthesis 1 protein-coding 13-PTNLD9-TUMOR_peak_14018 chr12 120517289 120517444 + 8.05816 NA intron (NM_207311, intron 6 of 8) intron (NM_207311, intron 6 of 8) 37277 NM_001167606 11021 Hs.524788 NM_006861 HPRD:05010 RAB35 H-ray|RAB1C|RAY RAB35, member RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_50117 chr8 12546304 12546407 + 8.05816 NA Intergenic HERVE-int|LTR|ERV1 -23235 NR_047662 729732 Hs.322761 NR_047662 LOC729732 - uncharacterized LOC729732 ncRNA 13-PTNLD9-TUMOR_peak_21956 chr17 72957824 72957918 + 8.05816 NA intron (NM_030630, intron 6 of 18) intron (NM_030630, intron 6 of 18) -8913 NR_110878 102723641 NR_110878 HID1-AS1 - HID1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_716 chr1 24828822 24829048 + 8.05816 NA promoter-TSS (NM_001251984) promoter-TSS (NM_001251984) -85 NR_045408 100750325 Hs.399958 NR_045407 RCAN3AS - RCAN3 antisense ncRNA 13-PTNLD9-TUMOR_peak_30831 chr20 33103333 33103478 + 8.05816 NA promoter-TSS (NR_104032) promoter-TSS (NR_104032) -784 NM_177953 83658 Hs.593920 NM_014183 HPRD:06203 DYNLRB1 BITH|BLP|DNCL2A|DNLC2A|ROBLD1 dynein, light chain, roadblock-type 1 protein-coding 13-PTNLD9-TUMOR_peak_53623 chr9 74980590 74980750 + 8.05816 NA promoter-TSS (NM_001102421) promoter-TSS (NM_001102421) -507 NM_006007 7763 Hs.406096 NM_006007 HPRD:05302 ZFAND5 ZA20D2|ZFAND5A|ZNF216 zinc finger, AN1-type domain 5 protein-coding 13-PTNLD9-TUMOR_peak_12727 chr12 49921678 49921774 + 8.05816 NA TTS (NM_023071) TTS (NM_023071) -11214 NM_012284 23416 Hs.64064 NM_012284 HPRD:05164 KCNH3 BEC1|ELK2|Kv12.2 potassium voltage-gated channel, subfamily H (eag-related), member 3 protein-coding 13-PTNLD9-TUMOR_peak_23548 chr18 77722434 77722540 + 8.05816 NA Intergenic Intergenic -2095 NM_001136180 440498 Hs.191582 NM_001136180 ENSG00000226742 HSBP1L1 - heat shock factor binding protein 1-like 1 protein-coding 13-PTNLD9-TUMOR_peak_36433 chr3 152848473 152848617 + 8.05816 NA Intergenic Intergenic -31456 NM_002886 5912 Hs.98643 NM_002886 RAP2B - RAP2B, member of RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_9646 chr11 44974081 44974258 + 8.05816 NA Intergenic Intergenic -1312 NM_001258324 9537 Hs.554791 NM_006034 HPRD:15545 TP53I11 PIG11 tumor protein p53 inducible protein 11 protein-coding 13-PTNLD9-TUMOR_peak_2706 chr1 107921652 107921800 + 8.05816 NA intron (NM_001113226, intron 3 of 7) intron (NM_001113226, intron 3 of 7) 238981 NM_014917 22854 Hs.732535 NM_014917 HPRD:16389 NTNG1 Lmnt1 netrin G1 protein-coding 13-PTNLD9-TUMOR_peak_50016 chr8 7731705 7731928 + 8.05816 NA Intergenic Intergenic -6910 NM_001081551 414325 Hs.283082 NM_001081551 ENSG00000176797 DEFB103A BD-3|DEFB-3|DEFB103|DEFB3|HBD3|HBP-3|HBP3|hBD-3 defensin, beta 103A protein-coding 13-PTNLD9-TUMOR_peak_19294 chr16 49782296 49782482 + 8.05816 NA intron (NM_015069, intron 2 of 7) intron (NM_015069, intron 2 of 7) 74260 NM_015069 23090 Hs.530930 NM_015069 HPRD:05189 ZNF423 Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104 zinc finger protein 423 protein-coding 13-PTNLD9-TUMOR_peak_52953 chr9 27087431 27087540 + 8.05816 NA Intergenic Intergenic -21654 NM_000459 7010 Hs.89640 NM_000459 HPRD:02571 TEK CD202B|TIE-2|TIE2|VMCM|VMCM1 TEK tyrosine kinase, endothelial protein-coding 13-PTNLD9-TUMOR_peak_6518 chr10 13452171 13452265 + 8.05816 NA Intergenic Intergenic -61920 NM_012247 22929 Hs.124027 NM_012247 HPRD:02944 SEPHS1 SELD|SPS|SPS1 selenophosphate synthetase 1 protein-coding 13-PTNLD9-TUMOR_peak_45944 chr6 116281299 116281397 + 8.05816 NA intron (NM_002031, intron 4 of 7) L1PA2|LINE|L1 -78546 NR_027338 728402 Hs.729953 NR_027338 TPI1P3 - triosephosphate isomerase 1 pseudogene 3 pseudo 13-PTNLD9-TUMOR_peak_31344 chr20 47810325 47810495 + 8.05816 NA Intergenic AluY|SINE|Alu -5506 NM_017452 6780 Hs.596704 NM_004602 HPRD:03422 STAU1 PPP1R150|STAU staufen double-stranded RNA binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_28436 chr2 131035877 131035971 + 8.05816 NA Intergenic Intergenic 64032 NM_032357 84317 Hs.104203 NM_032357 HPRD:14428 CCDC115 ccp1 coiled-coil domain containing 115 protein-coding 13-PTNLD9-TUMOR_peak_44838 chr6 36966303 36966419 + 8.05816 NA Intergenic Intergenic -7062 NM_173558 221472 Hs.509664 NM_173558 HPRD:05478 FGD2 ZFYVE4 FYVE, RhoGEF and PH domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_5839 chr1 232613639 232613887 + 8.05816 NA intron (NM_020808, intron 5 of 20) intron (NM_020808, intron 5 of 20) 37480 NM_020808 57568 Hs.745009 NM_020808 HPRD:15346 SIPA1L2 SPAL2 signal-induced proliferation-associated 1 like 2 protein-coding 13-PTNLD9-TUMOR_peak_16275 chr14 75389925 75390066 + 8.05816 NA promoter-TSS (NM_031464) promoter-TSS (NM_031464) -850 NM_031464 83694 Hs.414481 NM_031464 HPRD:18004 RPS6KL1 RSKL2 ribosomal protein S6 kinase-like 1 protein-coding 13-PTNLD9-TUMOR_peak_43926 chr6 16007060 16007213 + 8.05816 NA Intergenic Intergenic -122181 NM_013262 29116 Hs.484738 NM_013262 HPRD:17621 MYLIP IDOL|MIR myosin regulatory light chain interacting protein protein-coding 13-PTNLD9-TUMOR_peak_30309 chr20 3185215 3185348 + 8.05816 NA promoter-TSS (NM_023935) promoter-TSS (NM_023935) 14 NM_023935 65992 Hs.471975 NM_023935 HPRD:12741 DDRGK1 C20orf116|UFBP1|dJ1187M17.3 DDRGK domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_11061 chr11 102434942 102435120 + 8.05816 NA Intergenic Intergenic -33553 NM_002423 4316 Hs.2256 NM_002423 HPRD:01525 MMP7 MMP-7|MPSL1|PUMP-1 matrix metallopeptidase 7 (matrilysin, uterine) protein-coding 13-PTNLD9-TUMOR_peak_31992 chr21 19297452 19297554 + 8.05816 NA intron (NM_001204175, intron 1 of 5) intron (NM_001204175, intron 1 of 5) 7846 NM_001204178 140578 Hs.283725 NM_024944 HPRD:06261 CHODL C21orf68|MT75 chondrolectin protein-coding 13-PTNLD9-TUMOR_peak_51844 chr8 124706044 124706220 + 8.05816 NA intron (NM_001003954, intron 7 of 11) intron (NM_001003954, intron 7 of 11) -40942 NM_001081675 340359 Hs.450252 NM_001081675 ENSG00000175946 KLHL38 C8ORFK36 kelch-like family member 38 protein-coding 13-PTNLD9-TUMOR_peak_53973 chr9 93763460 93763874 + 8.05816 NA Intergenic Intergenic 73747 NR_033912 100129316 Hs.458154 NR_033912 LOC100129316 - uncharacterized LOC100129316 ncRNA 13-PTNLD9-TUMOR_peak_28863 chr2 160310782 160310945 + 8.05816 NA intron (NM_001289975, intron 3 of 35) Tigger3a|DNA|TcMar-Tigger -160942 NR_110588 643072 Hs.632541 NR_110587 LOC643072 - uncharacterized LOC643072 ncRNA 13-PTNLD9-TUMOR_peak_18135 chr16 263181 263324 + 8.05816 NA intron (NM_201412, intron 3 of 9) intron (NM_201412, intron 3 of 9) 16197 NM_201412 55692 Hs.16803 NM_018032 HPRD:08476 LUC7L LUC7-LIKE|LUC7B1|Luc7|SR+89|hLuc7B1 LUC7-like (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_4610 chr1 180540228 180540577 + 8.05816 NA Intergenic L1MB8|LINE|L1 12292 NR_125716 148756 NR_125716 OVAAL LINC01131|OVAL ovarian adenocarcinoma amplified long non-coding RNA ncRNA 13-PTNLD9-TUMOR_peak_48269 chr7 90255402 90255544 + 8.05816 NA intron (NM_001287135, intron 2 of 14) intron (NM_001287135, intron 2 of 14) 29797 NM_001287135 5218 Hs.258576 NM_012395 HPRD:15121 CDK14 PFTAIRE1|PFTK1 cyclin-dependent kinase 14 protein-coding 13-PTNLD9-TUMOR_peak_46850 chr7 6911484 6911660 + 8.05272 NA Intergenic HERVE-int|LTR|ERV1 -45646 NM_198097 221960 Hs.567779 NM_198097 HPRD:12916 CCZ1B C7orf28B|H_NH0577018.2 CCZ1 vacuolar protein trafficking and biogenesis associated homolog B (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_4056 chr1 159842809 159842950 + 8.05272 NA exon (NM_012337, exon 11 of 12) exon (NM_012337, exon 11 of 12) -10432 NM_001013661 391123 Hs.647718 NM_001013661 HPRD:18404 VSIG8 - V-set and immunoglobulin domain containing 8 protein-coding 13-PTNLD9-TUMOR_peak_4598 chr1 180120685 180120940 + 8.05272 NA Intergenic Intergenic -3156 NM_002826 5768 Hs.744925 NM_002826 HPRD:06785 QSOX1 Q6|QSCN6 quiescin Q6 sulfhydryl oxidase 1 protein-coding 13-PTNLD9-TUMOR_peak_16641 chr14 104007021 104007115 + 8.05272 NA Intergenic Intergenic 11559 NM_152307 115708 Hs.525610 NM_152307 HPRD:08810 TRMT61A C14orf172|GCD14|Gcd14p|TRM61|hTRM61 tRNA methyltransferase 61 homolog A (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_22150 chr17 76261909 76262059 + 8.05272 NA intron (NR_073178, intron 5 of 6) intron (NR_073178, intron 5 of 6) 12589 NR_073178 100996291 Hs.744493 NR_073178 ENSG00000204277 LOC100996291 - uncharacterized LOC100996291 ncRNA 13-PTNLD9-TUMOR_peak_20324 chr17 4856782 4857035 + 8.05272 NA intron (NM_001976, intron 5 of 11) intron (NM_001976, intron 5 of 11) 2524 NM_053013 2027 Hs.224171 NM_001976 HPRD:11746 ENO3 GSD13|MSE enolase 3 (beta, muscle) protein-coding 13-PTNLD9-TUMOR_peak_56080 chrX 68245857 68246151 + 8.05272 NA Intergenic MER63A|DNA|hAT-Blackjack 139361 NM_145119 64219 Hs.522679 NM_022368 HPRD:02335 PJA1 PRAJA1|RNF70 praja ring finger 1, E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_33372 chr22 42947948 42948144 + 8.05272 NA Intergenic LTR13|LTR|ERVK -1822 NR_104301 253190 Hs.728878 NM_014509 HPRD:15908 SERHL2 dJ222E13.1 serine hydrolase-like 2 protein-coding 13-PTNLD9-TUMOR_peak_43312 chr5 179498569 179498741 + 8.05272 NA exon (NM_018434, exon 1 of 9) exon (NM_018434, exon 1 of 9) 463 NM_001280801 55819 Hs.484363 NM_018434 HPRD:11504 RNF130 G1RZFP|GOLIATH|GP ring finger protein 130 protein-coding 13-PTNLD9-TUMOR_peak_50700 chr8 41180866 41181132 + 8.05272 NA Intergenic Intergenic -14009 NM_003012 6422 Hs.213424 NM_003012 HPRD:09165 SFRP1 FRP|FRP-1|FRP1|FrzA|SARP2 secreted frizzled-related protein 1 protein-coding 13-PTNLD9-TUMOR_peak_52128 chr8 133153680 133153783 + 8.05272 NA intron (NM_001204824, intron 9 of 14) MIRb|SINE|MIR -36219 NM_001145095 10086 Hs.285026 NM_005712 HPRD:06823 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 13-PTNLD9-TUMOR_peak_3721 chr1 153521891 153522001 + 8.04127 NA promoter-TSS (NM_002960) promoter-TSS (NM_002960) -212 NM_002960 6274 Hs.557609 NM_002960 HPRD:01507 S100A3 S100E S100 calcium binding protein A3 protein-coding 13-PTNLD9-TUMOR_peak_21990 chr17 73424998 73425101 + 8.04127 NA Intergenic Intergenic 22899 NR_037449 100500841 NR_037449 miRBase:MI0016079 MIR3678 - microRNA 3678 ncRNA 13-PTNLD9-TUMOR_peak_33444 chr22 46403814 46404016 + 8.04127 NA non-coding (NR_027240, exon 1 of 1) non-coding (NR_027240, exon 1 of 1) 1419 NR_027240 730668 Hs.640071 NR_027240 LOC730668 - dynein heavy chain -like pseudogene pseudo 13-PTNLD9-TUMOR_peak_3896 chr1 155945809 155945922 + 8.04127 NA intron (NM_001162384, intron 1 of 21) intron (NM_001162384, intron 1 of 21) 2101 NM_004723 9181 Hs.743352 NM_004723 HPRD:10458 ARHGEF2 GEF|GEF-H1|GEFH1|LFP40|P40 Rho/Rac guanine nucleotide exchange factor (GEF) 2 protein-coding 13-PTNLD9-TUMOR_peak_24290 chr19 16699297 16699444 + 8.04127 NA intron (NM_004831, intron 1 of 2) intron (NM_004831, intron 1 of 2) -16177 NM_024881 79939 Hs.620596 NM_024881 HPRD:15373 SLC35E1 - solute carrier family 35, member E1 protein-coding 13-PTNLD9-TUMOR_peak_13525 chr12 96235264 96236001 + 8.03723 NA Intergenic SVA_E|Other|Other -17077 NM_003095 6636 Hs.105465 NM_003095 SNRPF SMF|Sm-F|snRNP-F small nuclear ribonucleoprotein polypeptide F protein-coding 13-PTNLD9-TUMOR_peak_30120 chr2 238522898 238523288 + 8.03723 NA Intergenic MER103C|DNA|hAT-Charlie -13131 NM_001137550 9208 Hs.471779 NM_004735 HPRD:04460 LRRFIP1 FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP leucine rich repeat (in FLII) interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_51842 chr8 124699518 124699774 + 8.03723 NA intron (NM_001003954, intron 10 of 11) MER85|DNA|PiggyBac -34456 NM_001081675 340359 Hs.450252 NM_001081675 ENSG00000175946 KLHL38 C8ORFK36 kelch-like family member 38 protein-coding 13-PTNLD9-TUMOR_peak_22373 chr17 81031454 81031600 + 8.03723 NA Intergenic Intergenic -6040 NM_001004431 284207 Hs.378821 NM_001004431 HPRD:11255 METRNL - meteorin, glial cell differentiation regulator-like protein-coding 13-PTNLD9-TUMOR_peak_12874 chr12 53365478 53365686 + 8.03723 NA Intergenic Intergenic -21932 NM_001256293 3856 Hs.533782 NM_002273 HPRD:01015 KRT8 CARD2|CK-8|CK8|CYK8|K2C8|K8|KO keratin 8 protein-coding 13-PTNLD9-TUMOR_peak_49298 chr7 137942334 137942496 + 8.03723 NA Intergenic MER61E|LTR|ERV1 133911 NR_039678 100616226 NR_039678 miRBase:MI0016819 MIR4468 - microRNA 4468 ncRNA 13-PTNLD9-TUMOR_peak_32376 chr21 42512922 42513132 + 8.03723 NA TTS (NR_024100) TTS (NR_024100) 6964 NR_024100 284835 Hs.106234 NR_024100 ENSG00000226496 LINC00323 C21orf130|NCRNA00323|PRED42 long intergenic non-protein coding RNA 323 ncRNA 13-PTNLD9-TUMOR_peak_42696 chr5 151066445 151066640 + 8.03723 NA promoter-TSS (NM_003118) promoter-TSS (NM_003118) 73 NM_003118 6678 Hs.111779 NM_003118 HPRD:01631 SPARC ON secreted protein, acidic, cysteine-rich (osteonectin) protein-coding 13-PTNLD9-TUMOR_peak_15008 chr13 100148970 100149189 + 8.03406 NA intron (NR_110731, intron 2 of 4) MER51A|LTR|ERV1 2481 NR_110731 102725509 Hs.648968 NR_110731 LINC01232 - long intergenic non-protein coding RNA 1232 ncRNA 13-PTNLD9-TUMOR_peak_1228 chr1 39324571 39324824 + 8.03184 NA intron (NM_022157, intron 1 of 6) intron (NM_022157, intron 1 of 6) 798 NM_022157 64121 Hs.532461 NM_022157 HPRD:12198 RRAGC GTR2|RAGC|TIB929 Ras-related GTP binding C protein-coding 13-PTNLD9-TUMOR_peak_16792 chr15 23032999 23033098 + 8.03184 NA intron (NM_001184889, intron 2 of 9) AluJb|SINE|Alu 1379 NM_001008894 81614 Hs.591003 NM_030922 HPRD:16290 NIPA2 - non imprinted in Prader-Willi/Angelman syndrome 2 protein-coding 13-PTNLD9-TUMOR_peak_51 chr1 960179 960499 + 8.03184 NA intron (NM_198576, intron 2 of 35) intron (NM_198576, intron 2 of 35) 4836 NM_198576 375790 Hs.273330 NM_198576 HPRD:10550 AGRN CMSPPD agrin protein-coding 13-PTNLD9-TUMOR_peak_10398 chr11 67889187 67889397 + 8.03184 NA promoter-TSS (NM_212469) promoter-TSS (NM_212469) -434 NM_001277 1119 Hs.77221 NM_001277 HPRD:00327 CHKA CHK|CK|CKI|EK choline kinase alpha protein-coding 13-PTNLD9-TUMOR_peak_16967 chr15 32907560 32907873 + 8.03184 NA promoter-TSS (NM_014783) promoter-TSS (NM_014783) 25 NM_199357 9824 Hs.591130 NM_014783 HPRD:10656 ARHGAP11A GAP (1-12) Rho GTPase activating protein 11A protein-coding 13-PTNLD9-TUMOR_peak_35807 chr3 128102434 128102671 + 8.03184 NA intron (NM_021937, intron 6 of 6) intron (NM_021937, intron 6 of 6) -79885 NR_037890 285224 Hs.683815 NR_037890 ENSG00000242049 DNAJB8-AS1 - DNAJB8 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_6688 chr10 24325030 24325326 + 8.02622 NA intron (NM_001098500, intron 2 of 18) intron (NM_001098500, intron 2 of 18) -172542 NM_001282767 56243 Hs.445885 NM_019590 HPRD:11132 KIAA1217 SKT KIAA1217 protein-coding 13-PTNLD9-TUMOR_peak_6321 chr10 3805490 3805618 + 8.02622 NA Intergenic Intergenic 21919 NM_001300 1316 Hs.4055 NM_001300 HPRD:03632 KLF6 BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9 Kruppel-like factor 6 protein-coding 13-PTNLD9-TUMOR_peak_31480 chr20 49650387 49650502 + 8.02622 NA Intergenic LTR40b|LTR|ERVL -10769 NM_002237 3755 Hs.118695 NM_002237 HPRD:04809 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel, subfamily G, member 1 protein-coding 13-PTNLD9-TUMOR_peak_20301 chr17 4348161 4348288 + 8.02622 NA intron (NM_182538, intron 2 of 11) intron (NM_182538, intron 2 of 11) 11005 NM_182538 201305 Hs.657543 NM_182538 HPRD:14531 SPNS3 - spinster homolog 3 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_11827 chr12 2750001 2750173 + 8.02622 NA intron (NM_001129837, intron 30 of 45) intron (NM_001129837, intron 30 of 45) 31299 NR_046579 100874235 Hs.667644 NR_046579 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_20735 chr17 25822641 25822745 + 8.02622 NA intron (NM_014238, intron 2 of 20) intron (NM_014238, intron 2 of 20) 23657 NM_014238 8844 Hs.133534 NM_014238 KSR1 KSR|RSU2 kinase suppressor of ras 1 protein-coding 13-PTNLD9-TUMOR_peak_46559 chr6 168727101 168727208 + 8.02622 NA Intergenic Intergenic -6720 NM_214462 168002 Hs.673059 NM_214462 HPRD:12345 DACT2 C6orf116|DAPPER2|DPR2|bA503C24.7 dishevelled-binding antagonist of beta-catenin 2 protein-coding 13-PTNLD9-TUMOR_peak_39746 chr4 158745433 158745551 + 8.02622 NA Intergenic L1PB1|LINE|L1 251850 NR_026992 340017 Hs.428275 NR_026992 ENSG00000234111 LOC340017 - uncharacterized LOC340017 ncRNA 13-PTNLD9-TUMOR_peak_17473 chr15 66373224 66373388 + 8.02622 NA intron (NM_032445, intron 5 of 22) intron (NM_032445, intron 5 of 22) 40735 NR_036196 100422905 NR_036196 miRBase:MI0015841 MIR4311 - microRNA 4311 ncRNA 13-PTNLD9-TUMOR_peak_52924 chr9 22395953 22396109 + 8.02622 NA Intergenic MIRb|SINE|MIR -50809 NM_022160 63951 Hs.371976 NM_022160 DMRTA1 DMO|DMRT4 DMRT-like family A1 protein-coding 13-PTNLD9-TUMOR_peak_43879 chr6 14035757 14035915 + 8.02622 NA Intergenic MLT1J2|LTR|ERVL-MaLR -81651 NM_001251901 9308 Hs.595133 NM_004233 HPRD:05170 CD83 BL11|HB15 CD83 molecule protein-coding 13-PTNLD9-TUMOR_peak_34641 chr3 52074062 52074187 + 8.02622 NA Intergenic Intergenic 16337 NM_001947 1849 Hs.591664 NM_001947 HPRD:04125 DUSP7 MKPX|PYST2 dual specificity phosphatase 7 protein-coding 13-PTNLD9-TUMOR_peak_21290 chr17 45054818 45054934 + 8.02622 NA TTS (NM_203400) TTS (NM_203400) 1738 NM_203400 388394 Hs.367999 NM_203400 HPRD:14201 RPRML - reprimo-like protein-coding 13-PTNLD9-TUMOR_peak_29812 chr2 218550073 218550167 + 8.02622 NA intron (NR_026597, intron 1 of 12) intron (NR_026597, intron 1 of 12) 71196 NR_026597 729582 Hs.572788 NR_026597 ENSG00000231672 DIRC3 - disrupted in renal carcinoma 3 ncRNA 13-PTNLD9-TUMOR_peak_4253 chr1 165362276 165362415 + 8.02622 NA Intergenic Intergenic 31876 NM_001256571 6258 Hs.26550 NM_006917 HPRD:01579 RXRG NR2B3|RXRC retinoid X receptor, gamma protein-coding 13-PTNLD9-TUMOR_peak_30256 chr20 1254033 1254219 + 8.02622 NA intron (NM_014723, intron 2 of 5) L2c|LINE|L2 7166 NM_014723 9751 Hs.323833 NM_014723 HPRD:16081 SNPH bA314N13.5 syntaphilin protein-coding 13-PTNLD9-TUMOR_peak_8002 chr10 92631642 92631747 + 8.02622 NA promoter-TSS (NM_006413) promoter-TSS (NM_006413) -15 NM_001104546 10556 Hs.139120 NM_006413 HPRD:09359 RPP30 TSG15 ribonuclease P/MRP 30kDa subunit protein-coding 13-PTNLD9-TUMOR_peak_17584 chr15 71385817 71385954 + 8.02622 NA Intergenic Intergenic 21954 NM_001102658 196993 Hs.646533 NM_001102658 ENSG00000225362 CT62 - cancer/testis antigen 62 protein-coding 13-PTNLD9-TUMOR_peak_40468 chr5 19315171 19315349 + 8.02622 NA Intergenic MLT2B3|LTR|ERVL 571121 NM_001291957 1016 Hs.317632 NM_004934 HPRD:04314 CDH18 CDH14|CDH14L|CDH24 cadherin 18, type 2 protein-coding 13-PTNLD9-TUMOR_peak_27063 chr2 64518484 64518583 + 8.02622 NA Intergenic Intergenic 62998 NR_120420 100507006 Hs.442789 NR_120420 LOC100507006 - uncharacterized LOC100507006 ncRNA 13-PTNLD9-TUMOR_peak_16646 chr14 104043060 104043190 + 8.02622 NA intron (NM_032374, intron 3 of 4) intron (NM_032374, intron 3 of 4) 13826 NM_032374 84334 Hs.598441 NM_032374 APOPT1 APOP1|C14orf153 apoptogenic 1, mitochondrial protein-coding 13-PTNLD9-TUMOR_peak_38457 chr4 57276575 57276700 + 8.02622 NA intron (NM_002703, intron 1 of 10) intron (NM_002703, intron 1 of 10) -22963 NM_181806 132949 Hs.104347 NM_181806 HPRD:12398 AASDH ACSF4|LYS2|NRPS1098|NRPS998 aminoadipate-semialdehyde dehydrogenase protein-coding 13-PTNLD9-TUMOR_peak_8403 chr10 117729219 117729396 + 8.02622 NA Intergenic Intergenic 302512 NM_145793 2674 Hs.388347 NM_005264 HPRD:03291 GFRA1 GDNFR|GDNFRA|GFR-ALPHA-1|RET1L|RETL1|TRNR1 GDNF family receptor alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_22814 chr18 22879055 22879186 + 8.02622 NA intron (NM_015461, intron 3 of 7) intron (NM_015461, intron 3 of 7) 53094 NM_015461 25925 Hs.116935 NM_015461 HPRD:18350 ZNF521 EHZF|Evi3 zinc finger protein 521 protein-coding 13-PTNLD9-TUMOR_peak_8328 chr10 112159120 112159367 + 8.02622 NA Intergenic Intergenic -94536 NM_005871 10285 Hs.632093 NM_005871 SMNDC1 SMNR|SPF30|TDRD16C survival motor neuron domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_30093 chr2 236655102 236655206 + 8.02622 NA intron (NM_001037131, intron 5 of 17) intron (NM_001037131, intron 5 of 17) 252421 NM_001244888 116987 Hs.435039 NM_014914 HPRD:16359 AGAP1 AGAP-1|CENTG2|GGAP1|cnt-g2 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 protein-coding 13-PTNLD9-TUMOR_peak_18414 chr16 5265502 5265619 + 8.02622 NA Intergenic L2a|LINE|L2 -117739 NM_001289029 196483 Hs.406461 NM_201400 HPRD:18018 FAM86A - family with sequence similarity 86, member A protein-coding 13-PTNLD9-TUMOR_peak_45711 chr6 90094997 90095095 + 8.02622 NA intron (NM_021244, intron 2 of 6) intron (NM_021244, intron 2 of 6) 26949 NM_021244 58528 Hs.31712 NM_021244 HPRD:12199 RRAGD RAGD|bA11D8.2.1 Ras-related GTP binding D protein-coding 13-PTNLD9-TUMOR_peak_39949 chr4 184074468 184074589 + 8.02622 NA intron (NM_024949, intron 1 of 22) intron (NM_024949, intron 1 of 22) 54065 NM_024949 80014 Hs.333179 NM_024949 HPRD:12529 WWC2 BOMB WW and C2 domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_2916 chr1 114040033 114040127 + 8.02622 NA intron (NM_001142782, intron 1 of 20) L1HS|LINE|L1 106605 NM_152900 260425 Hs.486189 NM_020965 HPRD:11290 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_15052 chr13 104759118 104759304 + 8.02622 NA Intergenic Intergenic -824363 NR_049840 100847092 NR_049840 MIR548AS - microRNA 548as ncRNA 13-PTNLD9-TUMOR_peak_26691 chr2 42677396 42677497 + 8.02622 NA intron (NM_172344, intron 1 of 1) intron (NM_172344, intron 1 of 1) 43791 NM_133329 170850 Hs.352633 NM_133329 HPRD:16232 KCNG3 KV10.1|KV6.3 potassium voltage-gated channel, subfamily G, member 3 protein-coding 13-PTNLD9-TUMOR_peak_30472 chr20 14943947 14944105 + 8.02622 NA intron (NM_080676, intron 5 of 16) intron (NM_080676, intron 5 of 16) -33862 NR_037841 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_54290 chr9 107617017 107617194 + 8.02622 NA intron (NM_005502, intron 7 of 49) intron (NM_005502, intron 7 of 49) 73422 NM_005502 19 Hs.659274 NM_005502 HPRD:02501 ABCA1 ABC-1|ABC1|CERP|HDLDT1|TGD ATP-binding cassette, sub-family A (ABC1), member 1 protein-coding 13-PTNLD9-TUMOR_peak_23069 chr18 44287042 44287167 + 8.02622 NA intron (NM_013305, intron 1 of 6) intron (NM_013305, intron 1 of 6) 49935 NM_013305 29906 Hs.465025 NM_013305 HPRD:06199 ST8SIA5 SIAT8E|ST8SiaV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5 protein-coding 13-PTNLD9-TUMOR_peak_19431 chr16 57311643 57311779 + 8.02622 NA intron (NM_015993, intron 1 of 3) intron (NM_015993, intron 1 of 3) 6873 NM_015993 51090 Hs.632215 NM_015993 HPRD:11854 PLLP PMLP|TM4SF11 plasmolipin protein-coding 13-PTNLD9-TUMOR_peak_27732 chr2 97274408 97274535 + 8.02622 NA intron (NR_047656, intron 12 of 19) intron (NR_047656, intron 12 of 19) 29326 NR_047658 55683 Hs.516341 NM_017991 HPRD:07643 KANSL3 KIAA1310|NSL3|Rcd1 KAT8 regulatory NSL complex subunit 3 protein-coding 13-PTNLD9-TUMOR_peak_26405 chr2 27845856 27846007 + 8.02622 NA 3' UTR (NM_001271287, exon 13 of 13) 3' UTR (NM_001271287, exon 13 of 13) -5584 NM_001145047 11321 Hs.18259 NM_007266 HPRD:10308 GPN1 ATPBD1A|MBDIN|NTPBP|RPAP4|XAB1 GPN-loop GTPase 1 protein-coding 13-PTNLD9-TUMOR_peak_14860 chr13 74864593 74864782 + 8.02622 NA Intergenic Intergenic -128623 NR_047005 100874151 Hs.564552 NR_047005 ENSG00000226240 LINC00381 - long intergenic non-protein coding RNA 381 ncRNA 13-PTNLD9-TUMOR_peak_12035 chr12 7118188 7118294 + 8.02622 NA intron (NM_005768, intron 1 of 12) FRAM|SINE|Alu 7601 NM_005768 10162 Hs.655248 NM_005768 HPRD:12816 LPCAT3 C3F|LPCAT|LPLAT 5|LPSAT|MBOAT5|OACT5|nessy lysophosphatidylcholine acyltransferase 3 protein-coding 13-PTNLD9-TUMOR_peak_55802 chrX 47483150 47483285 + 8.02622 NA TTS (NM_002621) TTS (NM_002621) -3961 NM_006950 6853 Hs.225936 NM_006950 HPRD:02433 SYN1 SYN1a|SYN1b|SYNI synapsin I protein-coding 13-PTNLD9-TUMOR_peak_19828 chr16 79001237 79001364 + 8.02622 NA intron (NM_001291997, intron 7 of 7) AluJb|SINE|Alu 633322 NM_005360 4094 Hs.134859 NM_005360 HPRD:01518 MAF CCA4|c-MAF v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog protein-coding 13-PTNLD9-TUMOR_peak_1038 chr1 34098780 34098900 + 8.02622 NA intron (NM_052896, intron 32 of 69) intron (NM_052896, intron 32 of 69) 160608 NM_145238 7579 Hs.442705 NM_145238 HPRD:15769 ZSCAN20 KOX29|ZFP-31|ZNF31|ZNF360 zinc finger and SCAN domain containing 20 protein-coding 13-PTNLD9-TUMOR_peak_38602 chr4 76468149 76468297 + 8.02622 NA Intergenic Intergenic -13035 NM_178497 152816 Hs.24510 NM_178497 HPRD:08040 C4orf26 AI2A4 chromosome 4 open reading frame 26 protein-coding 13-PTNLD9-TUMOR_peak_21081 chr17 40407176 40407411 + 8.02622 NA intron (NM_012448, intron 1 of 18) intron (NM_012448, intron 1 of 18) 21131 NM_012448 6777 Hs.595276 NM_012448 HPRD:05037 STAT5B STAT5 signal transducer and activator of transcription 5B protein-coding 13-PTNLD9-TUMOR_peak_38875 chr4 89859390 89859504 + 8.02622 NA intron (NM_014883, intron 4 of 23) intron (NM_014883, intron 4 of 23) -114935 NM_001265578 10144 Hs.97270 NM_014883 HPRD:10944 FAM13A ARHGAP48|FAM13A1 family with sequence similarity 13, member A protein-coding 13-PTNLD9-TUMOR_peak_15350 chr14 24350585 24350707 + 8.02622 NA Intergenic MLT1H|LTR|ERVL-MaLR -72298 NM_001282988 10901 Hs.528385 NM_021004 HPRD:07484 DHRS4 CR|NRDR|PHCR|PSCD|SCAD-SRL|SDR-SRL|SDR25C1|SDR25C2 dehydrogenase/reductase (SDR family) member 4 protein-coding 13-PTNLD9-TUMOR_peak_44353 chr6 28180684 28180972 + 8.02622 NA Intergenic tRNA-Ser-AGY|tRNA|tRNA 5879 NR_002936 222699 Hs.161441 NR_002936 TOB2P1 TOB2P|TOB4p|p373c6.3 transducer of ERBB2, 2 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_55639 chrX 22538707 22538812 + 8.02622 NA intron (NR_073010, intron 4 of 5) L2|LINE|L2 247729 NM_152577 158506 Hs.132485 NM_152577 HPRD:06545 ZNF645 CT138|HAKAIL zinc finger protein 645 protein-coding 13-PTNLD9-TUMOR_peak_23770 chr19 6103428 6103554 + 8.02622 NA intron (NM_000635, intron 1 of 17) intron (NM_000635, intron 1 of 17) 7173 NM_000635 5990 Hs.465709 NM_000635 HPRD:00824 RFX2 - regulatory factor X, 2 (influences HLA class II expression) protein-coding 13-PTNLD9-TUMOR_peak_46123 chr6 137493747 137493872 + 8.02622 NA intron (NM_181309, intron 1 of 5) intron (NM_181309, intron 1 of 5) 976 NM_052962 116379 Hs.126891 NM_052962 HPRD:05973 IL22RA2 CRF2-10|CRF2-S1|CRF2X|IL-22BP|IL-22R-alpha-2|IL-22RA2|ZCYTOR16 interleukin 22 receptor, alpha 2 protein-coding 13-PTNLD9-TUMOR_peak_21815 chr17 63846713 63846825 + 8.02622 NA intron (NM_145036, intron 21 of 26) L2|LINE|L2 -24108 NM_001037325 201134 Hs.408676 NM_145036 HPRD:11336 CEP112 CCDC46|MACOCO centrosomal protein 112kDa protein-coding 13-PTNLD9-TUMOR_peak_55544 chrX 13242306 13242561 + 8.02622 NA Intergenic Intergenic -86338 NR_046087 100093698 Hs.643612 NR_046087 ENSG00000231216 GS1-600G8.3 - unknown transcript ncRNA 13-PTNLD9-TUMOR_peak_22742 chr18 20019433 20019618 + 8.02622 NA Intergenic LTR78|LTR|ERV1 -21647 NM_172241 64693 Hs.406709 NM_022663 HPRD:16395 CTAGE1 CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2 cutaneous T-cell lymphoma-associated antigen 1 protein-coding 13-PTNLD9-TUMOR_peak_56197 chrX 80020858 80021005 + 8.02622 NA intron (NM_153252, intron 6 of 40) ERVL-int|LTR|ERVL 44302 NM_153252 254065 Hs.147027 NM_153252 HPRD:06564 BRWD3 BRODL|MRX93 bromodomain and WD repeat domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_20788 chr17 27907465 27907577 + 8.02622 NA intron (NM_001085454, intron 7 of 20) intron (NM_001085454, intron 7 of 20) 9089 NM_001085454 28964 Hs.514051 NM_014030 HPRD:06577 GIT1 - G protein-coupled receptor kinase interacting ArfGAP 1 protein-coding 13-PTNLD9-TUMOR_peak_46752 chr7 4019954 4020117 + 8.02622 NA intron (NM_152744, intron 13 of 44) intron (NM_152744, intron 13 of 44) -149282 NM_001079653 221935 Hs.653013 NM_152744 HPRD:07388 SDK1 - sidekick cell adhesion molecule 1 protein-coding 13-PTNLD9-TUMOR_peak_12588 chr12 42361767 42361948 + 8.02622 NA Intergenic Intergenic 176816 NM_001099650 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_36398 chr3 150643495 150643710 + 8.02622 NA TTS (NR_046380) TTS (NR_046380) 18421 NM_052995 7401 Hs.745448 NM_052995 HPRD:05905 CLRN1 RP61|USH3|USH3A clarin 1 protein-coding 13-PTNLD9-TUMOR_peak_12749 chr12 50595892 50596003 + 8.02622 NA promoter-TSS (NM_001243775) promoter-TSS (NM_001243775) -631 NM_001243775 51474 Hs.525419 NM_016357 HPRD:09755 LIMA1 EPLIN|SREBP3 LIM domain and actin binding 1 protein-coding 13-PTNLD9-TUMOR_peak_39324 chr4 129349118 129349236 + 8.02622 NA Intergenic LTR41|LTR|ERVL -139193 NM_006320 10424 Hs.507910 NM_006320 HPRD:09665 PGRMC2 DG6|PMBP progesterone receptor membrane component 2 protein-coding 13-PTNLD9-TUMOR_peak_18702 chr16 20177988 20178152 + 8.02622 NA Intergenic Intergenic -92970 NM_001002911 124274 Hs.446875 NM_001002911 GPR139 GPRg1|PGR3 G protein-coupled receptor 139 protein-coding 13-PTNLD9-TUMOR_peak_21106 chr17 40935577 40935738 + 8.02622 NA intron (NM_032387, intron 2 of 18) L2c|LINE|L2 3008 NM_032387 65266 Hs.105448 NM_032387 HPRD:03505 WNK4 PHA2B|PRKWNK4 WNK lysine deficient protein kinase 4 protein-coding 13-PTNLD9-TUMOR_peak_45459 chr6 71108687 71108908 + 8.02622 NA Intergenic Intergenic -14310 NM_020819 57579 Hs.211700 NM_020819 HPRD:11144 FAM135A KIAA1411 family with sequence similarity 135, member A protein-coding 13-PTNLD9-TUMOR_peak_44285 chr6 27065060 27065236 + 8.02622 NA Intergenic tRNA-Ser-AGY|tRNA|tRNA 35427 NM_021058 8970 Hs.591807 NM_021058 HIST1H2BJ H2B/r|H2BFR|H2BJ histone cluster 1, H2bj protein-coding 13-PTNLD9-TUMOR_peak_17398 chr15 62411684 62411788 + 8.02622 NA Intergenic Intergenic 45746 NM_001007595 388125 Hs.144372 NM_001007595 HPRD:17636 C2CD4B FAM148B|NLF2 C2 calcium-dependent domain containing 4B protein-coding 13-PTNLD9-TUMOR_peak_43726 chr6 9620655 9620763 + 8.02622 NA Intergenic Intergenic -791842 NR_033910 100130275 Hs.661431 NR_033910 TFAP2A-AS1 - TFAP2A antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_14722 chr13 46709366 46709580 + 8.02622 NA intron (NM_002298, intron 13 of 15) intron (NM_002298, intron 13 of 15) -30262 NM_001278541 1361 Hs.512937 NM_001872 HPRD:04374 CPB2 CPU|PCPB|TAFI carboxypeptidase B2 (plasma) protein-coding 13-PTNLD9-TUMOR_peak_29427 chr2 196366649 196366743 + 8.02622 NA Intergenic MIRb|SINE|MIR -154836 NM_001127257 57181 Hs.650158 NM_020342 HPRD:10572 SLC39A10 LZT-Hs2 solute carrier family 39 (zinc transporter), member 10 protein-coding 13-PTNLD9-TUMOR_peak_55934 chrX 57021980 57022110 + 8.02622 NA promoter-TSS (NR_027139) promoter-TSS (NR_027139) -57 NM_001010862 169981 Hs.522672 NM_001010862 SPIN3 SPIN-3|bA445O16.1 spindlin family, member 3 protein-coding 13-PTNLD9-TUMOR_peak_6715 chr10 24931984 24932199 + 8.02622 NA intron (NM_020824, intron 4 of 25) L2c|LINE|L2 80506 NM_020824 57584 Hs.524195 NM_020824 HPRD:06445 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 13-PTNLD9-TUMOR_peak_51046 chr8 64144456 64144610 + 8.02622 NA Intergenic HERVL40-int|LTR|ERVL 62971 NM_001277818 253943 Hs.491861 NM_152758 HPRD:08106 YTHDF3 - YTH domain family, member 3 protein-coding 13-PTNLD9-TUMOR_peak_11849 chr12 3277967 3278109 + 8.02622 NA intron (NM_006675, intron 2 of 8) intron (NM_006675, intron 2 of 8) 91517 NM_006675 10867 Hs.504517 NM_006675 HPRD:14823 TSPAN9 NET-5|NET5|PP1057 tetraspanin 9 protein-coding 13-PTNLD9-TUMOR_peak_26231 chr2 18595189 18595286 + 8.02622 NA Intergenic Intergenic 146722 NM_020905 57665 Hs.120319 NM_020905 HPRD:10190 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 (all-trans/9-cis/11-cis) protein-coding 13-PTNLD9-TUMOR_peak_10167 chr11 64555190 64555293 + 8.02622 NA Intergenic Intergenic -8925 NM_201995 7536 Hs.502829 NM_004630 HPRD:03306 SF1 BBP|D11S636|MBBP|ZCCHC25|ZFM1|ZNF162 splicing factor 1 protein-coding 13-PTNLD9-TUMOR_peak_11308 chr11 116111488 116111654 + 8.02622 NA Intergenic L2b|LINE|L2 -480653 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 13-PTNLD9-TUMOR_peak_43596 chr6 4707396 4707560 + 8.02622 NA intron (NR_026590, intron 1 of 8) MIRb|SINE|MIR 1085 NR_026590 9425 Hs.269092 NM_004824 HPRD:04803 CDYL CDYL1 chromodomain protein, Y-like protein-coding 13-PTNLD9-TUMOR_peak_2964 chr1 115954528 115954661 + 8.02622 NA Intergenic MIRb|SINE|MIR -73737 NM_002506 4803 Hs.2561 NM_002506 HPRD:08874 NGF Beta-NGF|HSAN5|NGFB nerve growth factor (beta polypeptide) protein-coding 13-PTNLD9-TUMOR_peak_16451 chr14 92047721 92047889 + 8.02622 NA intron (NM_024764, intron 26 of 26) L2c|LINE|L2 -70981 NM_001284281 55671 Hs.533887 NM_017936 HPRD:11176 SMEK1 FLFL1|KIAA2010|PP4R3A|smk-1|smk1 SMEK homolog 1, suppressor of mek1 (Dictyostelium) protein-coding 13-PTNLD9-TUMOR_peak_47444 chr7 47990419 47990628 + 8.02622 NA Intergenic Intergenic -2452 NM_138295 168507 Hs.195979 NM_138295 HPRD:10154 PKD1L1 PRO19563 polycystic kidney disease 1 like 1 protein-coding 13-PTNLD9-TUMOR_peak_41297 chr5 74303428 74303553 + 8.02622 NA Intergenic Intergenic 23234 NM_016591 51301 Hs.272404 NM_016591 HPRD:16651 GCNT4 C2GNT3 glucosaminyl (N-acetyl) transferase 4, core 2 protein-coding 13-PTNLD9-TUMOR_peak_781 chr1 27004077 27004212 + 8.02622 NA Intergenic Intergenic -18378 NM_006015 8289 Hs.468972 NM_006015 HPRD:04319 ARID1A B120|BAF250|BAF250a|BM029|C1orf4|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1 AT rich interactive domain 1A (SWI-like) protein-coding 13-PTNLD9-TUMOR_peak_4528 chr1 178070478 178070606 + 8.02622 NA intron (NM_170692, intron 1 of 17) intron (NM_170692, intron 1 of 17) -7414 NR_027982 100302401 Hs.736117 NR_027982 ENSG00000224687 RASAL2-AS1 - RASAL2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_28196 chr2 118761044 118761145 + 8.02622 NA intron (NM_019044, intron 3 of 23) intron (NM_019044, intron 3 of 23) 10645 NM_019044 54520 Hs.107845 NM_019044 HPRD:08557 CCDC93 - coiled-coil domain containing 93 protein-coding 13-PTNLD9-TUMOR_peak_42958 chr5 169911183 169911281 + 8.02622 NA intron (NM_001034838, intron 1 of 7) intron (NM_001034838, intron 1 of 7) -19808 NM_001278339 30820 Hs.484111 NM_014592 HPRD:06879 KCNIP1 KCHIP1|VABP Kv channel interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_15582 chr14 37465932 37466028 + 8.02622 NA intron (NM_030631, intron 1 of 9) intron (NM_030631, intron 1 of 9) -44384 NR_039725 100616280 NR_039725 MIR4503 - microRNA 4503 ncRNA 13-PTNLD9-TUMOR_peak_52290 chr8 140732570 140732691 + 8.02622 NA Intergenic Intergenic -17331 NM_001282534 51305 Hs.493037 NM_001282534 HPRD:16167 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium channel, subfamily K, member 9 protein-coding 13-PTNLD9-TUMOR_peak_25960 chr2 2617230 2617424 + 8.02622 NA Intergenic L1M6|LINE|L1 -282282 NM_015025 23040 Hs.434418 NM_015025 HPRD:14797 MYT1L NZF1|ZC2HC4B myelin transcription factor 1-like protein-coding 13-PTNLD9-TUMOR_peak_42529 chr5 147215010 147215204 + 8.02622 NA intron (NM_003122, intron 1 of 4) intron (NM_003122, intron 1 of 4) 3687 NM_003122 6690 Hs.407856 NM_003122 HPRD:01341 SPINK1 PCTT|PSTI|Spink3|TATI|TCP serine peptidase inhibitor, Kazal type 1 protein-coding 13-PTNLD9-TUMOR_peak_30167 chr2 240582191 240582341 + 8.02622 NA Intergenic Intergenic -102288 NR_037808 150935 Hs.555582 NR_037808 LOC150935 - uncharacterized LOC150935 ncRNA 13-PTNLD9-TUMOR_peak_28844 chr2 159618306 159618488 + 8.02622 NA Intergenic Intergenic -33432 NM_001017920 92196 Hs.59761 NM_001017920 HPRD:18709 DAPL1 - death associated protein-like 1 protein-coding 13-PTNLD9-TUMOR_peak_22944 chr18 33901806 33901926 + 8.02622 NA intron (NM_001281739, intron 1 of 23) intron (NM_001281739, intron 1 of 23) 24207 NM_001281739 80206 Hs.630884 NM_025135 HPRD:16894 FHOD3 FHOS2|Formactin2 formin homology 2 domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_9119 chr11 12922172 12922311 + 8.02622 NA intron (NM_021961, intron 9 of 12) intron (NM_021961, intron 9 of 12) 88854 NR_038904 100506305 Hs.153408 NR_038904 ENSG00000251381 LINC00958 - long intergenic non-protein coding RNA 958 ncRNA 13-PTNLD9-TUMOR_peak_50906 chr8 49777593 49777731 + 8.02622 NA Intergenic Intergenic 56337 NM_003068 6591 Hs.360174 NM_003068 HPRD:03689 SNAI2 SLUG|SLUGH1|SNAIL2|WS2D snail family zinc finger 2 protein-coding 13-PTNLD9-TUMOR_peak_46170 chr6 142019981 142020205 + 8.02622 NA Intergenic LTR27B|LTR|ERV1 389843 NM_002511 4829 Hs.654478 NM_002511 HPRD:01211 NMBR BB1 neuromedin B receptor protein-coding 13-PTNLD9-TUMOR_peak_34797 chr3 59559754 59559855 + 8.02622 NA Intergenic MER44B|DNA|TcMar-Tigger -524089 NM_198463 200844 Hs.368434 NM_198463 HPRD:13458 C3orf67 - chromosome 3 open reading frame 67 protein-coding 13-PTNLD9-TUMOR_peak_8042 chr10 95506832 95506939 + 8.02622 NA Intergenic Intergenic -10681 NM_005097 9211 Hs.533670 NM_005097 HPRD:05216 LGI1 ADLTE|ADPAEF|ADPEAF|EPITEMPIN|EPT|ETL1|IB1099 leucine-rich, glioma inactivated 1 protein-coding 13-PTNLD9-TUMOR_peak_21824 chr17 64713914 64714122 + 8.02622 NA intron (NM_002737, intron 8 of 16) intron (NM_002737, intron 8 of 16) -69172 NR_030364 693219 NR_030364 MIR634 MIRN634|hsa-mir-634 microRNA 634 ncRNA 13-PTNLD9-TUMOR_peak_11182 chr11 111101256 111101436 + 8.02622 NA Intergenic Intergenic -25361 NM_198498 341032 Hs.298685 NM_198498 HPRD:14663 C11orf53 - chromosome 11 open reading frame 53 protein-coding 13-PTNLD9-TUMOR_peak_12945 chr12 55044355 55044468 + 8.02622 NA Intergenic L2c|LINE|L2 -2134 NM_053283 117159 Hs.350570 NM_053283 HPRD:07363 DCD AIDD|DCD-1|DSEP|HCAP|PIF dermcidin protein-coding 13-PTNLD9-TUMOR_peak_30164 chr2 240491432 240491606 + 8.02622 NA Intergenic MLT1H|LTR|ERVL-MaLR -168876 NM_006037 9759 Hs.20516 NM_006037 HPRD:05610 HDAC4 AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA histone deacetylase 4 protein-coding 13-PTNLD9-TUMOR_peak_17088 chr15 40722760 40722878 + 8.02622 NA Intergenic L2b|LINE|L2 -9101 NM_001301132 22893 Hs.22109 NM_014952 HPRD:12518 BAHD1 - bromo adjacent homology domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_38037 chr4 15939958 15940122 + 8.02622 NA 5' UTR (NM_005130, exon 2 of 3) 5' UTR (NM_005130, exon 2 of 3) 323 NM_005130 9982 Hs.1690 NM_005130 HPRD:06371 FGFBP1 FGF-BP|FGF-BP1|FGFBP|FGFBP-1|HBP17 fibroblast growth factor binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_15502 chr14 34173741 34173920 + 8.02622 NA intron (NM_001165893, intron 5 of 10) intron (NM_001165893, intron 5 of 10) 246454 NM_022073 112399 Hs.135507 NM_022073 HPRD:06972 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia-inducible factor 3 protein-coding 13-PTNLD9-TUMOR_peak_34341 chr3 42297858 42298008 + 8.02622 NA Intergenic Intergenic 7506 NM_001174138 885 Hs.458426 NM_000729 HPRD:00321 CCK - cholecystokinin protein-coding 13-PTNLD9-TUMOR_peak_14398 chr13 21517753 21517941 + 8.02622 NA intron (NR_104058, intron 2 of 5) intron (NR_104058, intron 2 of 5) 5720 NR_104058 101930748 Hs.637638 NR_104058 LINC00367 - long intergenic non-protein coding RNA 367 ncRNA 13-PTNLD9-TUMOR_peak_54933 chr9 133735467 133735564 + 8.02622 NA intron (NM_005157, intron 3 of 10) intron (NM_005157, intron 3 of 10) 24873 NM_005157 25 Hs.431048 NM_005157 HPRD:01809 ABL1 ABL|JTK7|bcr/abl|c-ABL|c-ABL1|p150|v-abl ABL proto-oncogene 1, non-receptor tyrosine kinase protein-coding 13-PTNLD9-TUMOR_peak_55632 chrX 21431154 21431266 + 8.02622 NA intron (NM_001168648, intron 1 of 20) L1MB3|LINE|L1 38674 NM_001168648 22866 Hs.555917 NM_014927 HPRD:06473 CNKSR2 CNK2|KSR2|MAGUIN connector enhancer of kinase suppressor of Ras 2 protein-coding 13-PTNLD9-TUMOR_peak_43181 chr5 176676868 176677010 + 8.02622 NA intron (NM_172349, intron 12 of 23) AluJb|SINE|Alu 53806 NM_001031677 53917 Hs.16258 NM_130781 HPRD:06697 RAB24 - RAB24, member RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_39495 chr4 142346460 142346570 + 8.02622 NA Intergenic ERVL-E-int|LTR|ERVL -92744 NR_121625 100507639 Hs.535010 NR_121625 ENSG00000248810 LOC100507639 - uncharacterized LOC100507639 ncRNA 13-PTNLD9-TUMOR_peak_12431 chr12 31159038 31159280 + 8.02622 NA Intergenic Intergenic -67620 NM_004399 1663 Hs.443960 NM_004399 HPRD:03095 DDX11 CHL1|CHLR1|KRG2|WABS DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 protein-coding 13-PTNLD9-TUMOR_peak_22724 chr18 19576493 19576616 + 8.02622 NA Intergenic Intergenic -165187 NR_110369 102723167 Hs.658808 NR_110369 MIR133A1HG MIR1-2HG MIR133A1 host gene (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_15796 chr14 54182143 54182379 + 8.02622 NA Intergenic Intergenic 232941 NR_049843 100847076 NR_049843 miRBase:MI0019135 MIR5580 - microRNA 5580 ncRNA 13-PTNLD9-TUMOR_peak_27458 chr2 86026960 86027075 + 8.02622 NA Intergenic Intergenic -15236 NR_038888 284950 Hs.570227 NR_038888 LOC284950 - uncharacterized LOC284950 ncRNA 13-PTNLD9-TUMOR_peak_41468 chr5 86596720 86596835 + 8.02622 NA intron (NM_022650, intron 1 of 24) intron (NM_022650, intron 1 of 24) 32036 NM_022650 5921 Hs.664080 NM_002890 HPRD:00745 RASA1 CM-AVM|CMAVM|GAP|PKWS|RASA|RASGAP|p120GAP|p120RASGAP RAS p21 protein activator (GTPase activating protein) 1 protein-coding 13-PTNLD9-TUMOR_peak_14938 chr13 91100111 91100228 + 8.02622 NA Intergenic L2a|LINE|L2 -45373 NR_120414 101927224 Hs.385801 NR_120414 LINC01049 - long intergenic non-protein coding RNA 1049 ncRNA 13-PTNLD9-TUMOR_peak_50477 chr8 28514865 28514983 + 8.02622 NA Intergenic Intergenic -44066 NR_073469 2137 Hs.491354 NM_001440 HPRD:09306 EXTL3 BOTV|EXTL1L|EXTR1|REGR|RPR exostosin-like glycosyltransferase 3 protein-coding 13-PTNLD9-TUMOR_peak_16389 chr14 86400734 86401031 + 8.02622 NA promoter-TSS (NR_110155) promoter-TSS (NR_110155) -140 NR_110155 101928767 Hs.536380 NR_110155 LOC101928767 - uncharacterized LOC101928767 ncRNA 13-PTNLD9-TUMOR_peak_17140 chr15 42873613 42873894 + 8.02622 NA intron (NM_020759, intron 1 of 32) CpG 5896 NM_020759 57519 Hs.122061 NM_020759 ENSG00000159433 STARD9 - StAR-related lipid transfer (START) domain containing 9 protein-coding 13-PTNLD9-TUMOR_peak_2072 chr1 64681313 64681492 + 8.02622 NA intron (NM_152489, intron 5 of 8) intron (NM_152489, intron 5 of 8) 11912 NM_152489 148581 Hs.388746 NM_152489 HPRD:14599 UBE2U - ubiquitin-conjugating enzyme E2U (putative) protein-coding 13-PTNLD9-TUMOR_peak_9962 chr11 60542886 60543073 + 8.02622 NA intron (NR_103481, intron 7 of 7) intron (NR_103481, intron 7 of 7) -9842 NM_206893 341116 Hs.591956 NM_206893 HPRD:16330 MS4A10 CD20L7|MS4A9 membrane-spanning 4-domains, subfamily A, member 10 protein-coding 13-PTNLD9-TUMOR_peak_11380 chr11 118827336 118827499 + 8.02622 NA intron (NM_006760, intron 1 of 4) intron (NM_006760, intron 1 of 4) 409 NM_006760 7379 Hs.379613 NM_006760 HPRD:10295 UPK2 UP2|UPII uroplakin 2 protein-coding 13-PTNLD9-TUMOR_peak_26998 chr2 60441123 60441249 + 8.02622 NA Intergenic Intergenic 173394 NR_039631 100616473 NR_039631 miRBase:MI0016772 MIR4432 - microRNA 4432 ncRNA 13-PTNLD9-TUMOR_peak_17472 chr15 66331505 66331639 + 8.02622 NA promoter-TSS (NR_036196) promoter-TSS (NR_036196) -999 NR_036196 100422905 NR_036196 miRBase:MI0015841 MIR4311 - microRNA 4311 ncRNA 13-PTNLD9-TUMOR_peak_41810 chr5 115276817 115276970 + 8.02622 NA Intergenic Intergenic -21258 NM_173800 206338 Hs.98288 NM_173800 HPRD:07118 AQPEP APQ|LVRN laeverin protein-coding 13-PTNLD9-TUMOR_peak_52772 chr9 14353601 14353703 + 8.02622 NA intron (NM_001190738, intron 1 of 8) intron (NM_001190738, intron 1 of 8) -39607 NM_001190737 4781 Hs.644095 NM_005596 HPRD:09008 NFIB CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I/B protein-coding 13-PTNLD9-TUMOR_peak_52198 chr8 135046290 135046388 + 8.02622 NA Intergenic Intergenic 147600 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 13-PTNLD9-TUMOR_peak_31972 chr21 18167413 18167530 + 8.02622 NA Intergenic L2b|LINE|L2 204914 NR_029694 406912 NR_029694 miRBase:MI0000470 MIR125B2 MIRN125B2 microRNA 125b-2 ncRNA 13-PTNLD9-TUMOR_peak_46742 chr7 3479107 3479242 + 8.02622 NA intron (NM_152744, intron 1 of 44) L4|LINE|RTE 138094 NM_152744 221935 Hs.653013 NM_152744 HPRD:07388 SDK1 - sidekick cell adhesion molecule 1 protein-coding 13-PTNLD9-TUMOR_peak_41202 chr5 70743204 70743329 + 8.02622 NA Intergenic Intergenic -8176 NM_018429 55814 Hs.258272 NM_018429 HPRD:06114 BDP1 HSA238520|TAF3B1|TFC5|TFIIIB''|TFIIIB150|TFIIIB90|TFNR B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB protein-coding 13-PTNLD9-TUMOR_peak_16545 chr14 98811689 98811787 + 8.02622 NA Intergenic Intergenic -366212 NM_182560 283598 Hs.448754 NM_182560 HPRD:08075 C14orf177 - chromosome 14 open reading frame 177 protein-coding 13-PTNLD9-TUMOR_peak_11689 chr11 130903026 130903243 + 8.02622 NA Intergenic Intergenic -116752 NM_001301089 399979 Hs.444024 NM_014758 HPRD:18621 SNX19 CHET8 sorting nexin 19 protein-coding 13-PTNLD9-TUMOR_peak_20294 chr17 4064668 4064835 + 8.02622 NA Intergenic Intergenic 17836 NM_001254755 124936 Hs.513871 NM_144611 HPRD:14549 CYB5D2 - cytochrome b5 domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_30348 chr20 4694059 4694295 + 8.02622 NA Intergenic Intergenic -8323 NM_012409 23627 Hs.406696 NM_012409 HPRD:05039 PRND DOPPEL|DPL|PrPLP|dJ1068H6.4 prion protein 2 (dublet) protein-coding 13-PTNLD9-TUMOR_peak_47407 chr7 46297792 46297897 + 8.02622 NA Intergenic L2c|LINE|L2 -336973 NM_001013398 3486 Hs.450230 NM_000598 HPRD:00899 IGFBP3 BP-53|IBP3 insulin-like growth factor binding protein 3 protein-coding 13-PTNLD9-TUMOR_peak_39803 chr4 165125752 165125953 + 8.02622 NA intron (NM_001166373, intron 1 of 7) intron (NM_001166373, intron 1 of 7) -6989 NM_012403 23520 Hs.661161 NM_012403 ANP32C PP32R1 acidic (leucine-rich) nuclear phosphoprotein 32 family, member C protein-coding 13-PTNLD9-TUMOR_peak_48835 chr7 112063089 112063250 + 8.02622 NA promoter-TSS (NM_001197080) promoter-TSS (NM_001197080) -30 NM_001007245 3475 Hs.7879 NM_001550 IFRD1 PC4|TIS7 interferon-related developmental regulator 1 protein-coding 13-PTNLD9-TUMOR_peak_18551 chr16 12927934 12928039 + 8.02622 NA Intergenic Intergenic -30242 NM_018340 55313 Hs.460002 NM_018340 CPPED1 CSTP1 calcineurin-like phosphoesterase domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_53678 chr9 78752030 78752192 + 8.02622 NA intron (NM_006200, intron 10 of 20) intron (NM_006200, intron 10 of 20) 246551 NM_001190482 5125 Hs.368542 NM_006200 HPRD:08985 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 13-PTNLD9-TUMOR_peak_45311 chr6 52802805 52802973 + 8.02622 NA Intergenic Intergenic -28393 NM_000847 2940 Hs.102484 NM_000847 HPRD:07290 GSTA3 GSTA3-3|GTA3 glutathione S-transferase alpha 3 protein-coding 13-PTNLD9-TUMOR_peak_366 chr1 10399988 10400106 + 8.02622 NA intron (NM_015074, intron 30 of 46) intron (NM_015074, intron 30 of 46) 41023 NR_125730 103625684 NR_125730 RNU6-2 U6-2 RNA, U6 small nuclear 2 snRNA 13-PTNLD9-TUMOR_peak_28751 chr2 153233084 153233178 + 8.02622 NA intron (NM_052905, intron 1 of 25) intron (NM_052905, intron 1 of 25) 41380 NM_052905 114793 Hs.654630 NM_052905 HPRD:13545 FMNL2 FHOD2 formin-like 2 protein-coding 13-PTNLD9-TUMOR_peak_8431 chr10 119496325 119496506 + 8.02622 NA Intergenic Intergenic -191836 NR_002791 196047 Hs.312592 NR_002791 EMX2OS EMX2-AS1|NCRNA00045 EMX2 opposite strand/antisense RNA ncRNA 13-PTNLD9-TUMOR_peak_45456 chr6 71063191 71063292 + 8.02622 NA Intergenic AluJo|SINE|Alu -50455 NM_001851 1297 Hs.590892 NM_001851 HPRD:00367 COL9A1 DJ149L1.1.2|EDM6|MED|STL4 collagen, type IX, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_53038 chr9 33408130 33408384 + 8.02622 NA Intergenic Intergenic -5740 NM_001170 364 Hs.455323 NM_001170 HPRD:04277 AQP7 AQP7L|AQP9|AQPap|GLYCQTL aquaporin 7 protein-coding 13-PTNLD9-TUMOR_peak_6588 chr10 17320974 17321083 + 8.02622 NA Intergenic MER77|LTR|ERVL -49044 NR_108061 100507347 Hs.740502 NR_108060 VIM-AS1 - VIM antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_18328 chr16 3493498 3493697 + 8.02622 NA promoter-TSS (NM_001083601) promoter-TSS (NM_001083601) -71 NM_001083601 79903 Hs.513296 NM_024845 HPRD:07852 NAA60 HAT4|NAT15 N(alpha)-acetyltransferase 60, NatF catalytic subunit protein-coding 13-PTNLD9-TUMOR_peak_42546 chr5 148110622 148110755 + 8.02622 NA Intergenic Intergenic -76598 NM_000870 3360 Hs.483773 NM_000870 ENSG00000164270 HTR4 5-HT4|5-HT4R 5-hydroxytryptamine (serotonin) receptor 4, G protein-coupled protein-coding 13-PTNLD9-TUMOR_peak_33024 chr22 27503901 27504089 + 8.02622 NA Intergenic Intergenic 204740 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000223704 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 13-PTNLD9-TUMOR_peak_50410 chr8 26663881 26664056 + 8.02622 NA intron (NM_033303, intron 1 of 2) intron (NM_033303, intron 1 of 2) 58954 NM_033304 148 Hs.709175 NM_000680 HPRD:00081 ADRA1A ADRA1C|ADRA1L1|ALPHA1AAR adrenoceptor alpha 1A protein-coding 13-PTNLD9-TUMOR_peak_40991 chr5 59492377 59492544 + 8.02622 NA intron (NM_001165899, intron 1 of 16) intron (NM_001165899, intron 1 of 16) -291080 NR_024617 25859 Hs.146312 NM_001039499 HPRD:09230 PART1 NCRNA00206 prostate androgen-regulated transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_14605 chr13 37256511 37256639 + 8.02622 NA intron (NM_203451, intron 1 of 1) L2c|LINE|L2 8526 NM_203451 400120 Hs.422375 NM_203451 HPRD:14219 SERTM1 C13orf36 serine-rich and transmembrane domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_45150 chr6 44280984 44281139 + 8.02622 NA promoter-TSS (NM_020745) promoter-TSS (NM_020745) 2 NM_020745 57505 Hs.158381 NM_020745 HPRD:12397 AARS2 AARSL|COXPD8|LKENP|MT-ALARS|MTALARS alanyl-tRNA synthetase 2, mitochondrial protein-coding 13-PTNLD9-TUMOR_peak_15842 chr14 55679996 55680091 + 8.02622 NA Intergenic Intergenic -21647 NM_014750 9787 Hs.77695 NM_014750 HPRD:06490 DLGAP5 DLG7|HURP discs, large (Drosophila) homolog-associated protein 5 protein-coding 13-PTNLD9-TUMOR_peak_55760 chrX 44402191 44402401 + 8.02622 NA promoter-TSS (NM_173794) promoter-TSS (NM_173794) -75 NM_173794 139341 Hs.7549 NM_173794 HPRD:06658 FUNDC1 - FUN14 domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_46547 chr6 168325829 168326115 + 8.02622 NA intron (NM_001291964, intron 22 of 32) intron (NM_001291964, intron 22 of 32) 51647 NM_001129895 100128124 Hs.448059 NM_001129895 HGC6.3 - uncharacterized LOC100128124 protein-coding 13-PTNLD9-TUMOR_peak_17076 chr15 40559176 40559280 + 8.02622 NA intron (NM_001276718, intron 5 of 9) MIR|SINE|MIR 13849 NM_001276717 56924 Hs.513645 NM_020168 HPRD:06426 PAK6 PAK5 p21 protein (Cdc42/Rac)-activated kinase 6 protein-coding 13-PTNLD9-TUMOR_peak_51810 chr8 123875917 123876100 + 8.02622 NA intron (NM_014943, intron 2 of 3) intron (NM_014943, intron 2 of 3) 82107 NM_014943 22882 Hs.377090 NM_014943 HPRD:16458 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 13-PTNLD9-TUMOR_peak_14874 chr13 76291077 76291245 + 8.02622 NA intron (NM_005358, intron 3 of 29) intron (NM_005358, intron 3 of 29) -43636 NM_015842 4008 Hs.207631 NM_005358 HPRD:05078 LMO7 FBX20|FBXO20|LOMP LIM domain 7 protein-coding 13-PTNLD9-TUMOR_peak_29575 chr2 203286226 203286328 + 8.02622 NA intron (NM_001204, intron 1 of 12) AluYc|SINE|Alu 45227 NM_001204 659 Hs.471119 NM_001204 HPRD:02880 BMPR2 BMPR-II|BMPR3|BMR2|BRK-3|POVD1|PPH1|T-ALK bone morphogenetic protein receptor, type II (serine/threonine kinase) protein-coding 13-PTNLD9-TUMOR_peak_2745 chr1 109693899 109694009 + 8.02622 NA intron (NM_001284352, intron 1 of 20) intron (NM_001284352, intron 1 of 20) -35217 NM_001284353 57535 Hs.708190 NM_020775 KIAA1324 EIG121 KIAA1324 protein-coding 13-PTNLD9-TUMOR_peak_18821 chr16 24759716 24759830 + 8.02622 NA intron (NM_014494, intron 2 of 24) intron (NM_014494, intron 2 of 24) 18724 NM_014494 27327 Hs.655057 NM_014494 HPRD:11640 TNRC6A CAGH26|GW1|GW182|TNRC6 trinucleotide repeat containing 6A protein-coding 13-PTNLD9-TUMOR_peak_39660 chr4 153249909 153250013 + 8.02622 NA intron (NM_018315, intron 7 of 10) intron (NM_018315, intron 7 of 10) -8846 NR_104273 102191832 Hs.712524 NR_104273 ENSG00000270751 DEAR DEspR dual endothelin-1(VEGFsp)/angiotensin II receptor pseudogene pseudo 13-PTNLD9-TUMOR_peak_14565 chr13 33700474 33700620 + 8.02622 NA intron (NM_178006, intron 6 of 13) intron (NM_178006, intron 6 of 13) 59669 NM_001243466 90627 Hs.156551 NM_052851 HPRD:11607 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR-related lipid transfer (START) domain containing 13 protein-coding 13-PTNLD9-TUMOR_peak_12795 chr12 52387033 52387129 + 8.02622 NA intron (NM_020327, intron 8 of 8) intron (NM_020327, intron 8 of 8) -13648 NM_181711 160622 Hs.407202 NM_181711 HPRD:17077 GRASP TAMALIN GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein protein-coding 13-PTNLD9-TUMOR_peak_17320 chr15 55223994 55224088 + 8.02622 NA Intergenic L1HS|LINE|L1 265190 NM_016304 51187 Hs.274772 NM_016304 RSL24D1 C15orf15|HRP-L30-iso|L30|RLP24|RPL24|RPL24L|TVAS3 ribosomal L24 domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_3072 chr1 120125576 120125673 + 8.02622 NA Intergenic Intergenic 16290 NR_036540 644242 Hs.515383 NR_036540 ENSG00000260941 LINC00622 - long intergenic non-protein coding RNA 622 ncRNA 13-PTNLD9-TUMOR_peak_8123 chr10 99486771 99486865 + 8.02622 NA Intergenic Intergenic -10060 NM_001174121 118813 Hs.744075 NM_144588 HPRD:15735 ZFYVE27 PROTRUDIN|SPG33 zinc finger, FYVE domain containing 27 protein-coding 13-PTNLD9-TUMOR_peak_7874 chr10 81838386 81838805 + 8.02622 NA promoter-TSS (NR_072986) promoter-TSS (NR_072986) -184 NM_001270367 80195 Hs.169982 NM_025125 HPRD:08501 TMEM254 C10orf57|bA369J21.6 transmembrane protein 254 protein-coding 13-PTNLD9-TUMOR_peak_35735 chr3 126398203 126398308 + 8.02622 NA Intergenic CpG 17331 NR_034158 255330 Hs.145435 NM_174935 ENSG00000198284 NUP210P1 C3orf46 nucleoporin 210kDa pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_30330 chr20 3852290 3852555 + 8.02622 NA non-coding (NR_037921, exon 6 of 6) non-coding (NR_037921, exon 6 of 6) -17064 NM_024960 80025 Hs.516859 NM_024960 ENSG00000125779 PANK2 C20orf48|HARP|HSS|NBIA1|PKAN pantothenate kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_5367 chr1 212740577 212740754 + 8.02622 NA intron (NM_001030287, intron 1 of 3) intron (NM_001030287, intron 1 of 3) 1989 NM_001030287 467 Hs.460 NM_001674 HPRD:04395 ATF3 - activating transcription factor 3 protein-coding 13-PTNLD9-TUMOR_peak_38080 chr4 22180880 22181009 + 8.02622 NA Intergenic Intergenic 160345 NR_037877 100505912 Hs.270471 NR_037877 LOC100505912 - uncharacterized LOC100505912 ncRNA 13-PTNLD9-TUMOR_peak_14550 chr13 31746268 31746439 + 8.02622 NA Intergenic Intergenic -9828 NM_001286505 10808 Hs.743267 NM_006644 HPRD:09990 HSPH1 HSP105|HSP105A|HSP105B|NY-CO-25 heat shock 105kDa/110kDa protein 1 protein-coding 13-PTNLD9-TUMOR_peak_17927 chr15 88846803 88846933 + 8.02622 NA Intergenic MLT1J2|LTR|ERVL-MaLR -46906 NM_001012338 4916 Hs.410969 NM_002530 HPRD:01870 NTRK3 TRKC|gp145(trkC) neurotrophic tyrosine kinase, receptor, type 3 protein-coding 13-PTNLD9-TUMOR_peak_54936 chr9 133816578 133816680 + 8.02622 NA Intergenic Intergenic -2174 NM_001145106 84929 Hs.133205 NM_032843 HPRD:16895 FIBCD1 - fibrinogen C domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_32120 chr21 33002561 33002680 + 8.02622 NA Intergenic AluJo|SINE|Alu -29315 NM_000454 6647 Hs.443914 NM_000454 HPRD:00937 SOD1 ALS|ALS1|HEL-S-44|IPOA|SOD|hSod1|homodimer superoxide dismutase 1, soluble protein-coding 13-PTNLD9-TUMOR_peak_52884 chr9 21049235 21049375 + 8.02622 NA Intergenic MLT2B5|LTR|ERVL -17670 NM_001010915 401494 Hs.716678 NM_001010915 PTPLAD2 HACD4 protein tyrosine phosphatase-like A domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_2371 chr1 87865083 87865222 + 8.02622 NA Intergenic Intergenic -27814 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 13-PTNLD9-TUMOR_peak_20679 chr17 21262388 21262483 + 8.02622 NA Intergenic Intergenic -17264 NM_021012 3768 Hs.200629 NM_021012 HPRD:09083 KCNJ12 IRK-2|IRK2|KCNJN1|Kir2.2|Kir2.2v|hIRK|hIRK1|hkir2.2x|kcnj12x potassium inwardly-rectifying channel, subfamily J, member 12 protein-coding 13-PTNLD9-TUMOR_peak_37190 chr3 189730119 189730294 + 8.02622 NA intron (NM_001134418, intron 1 of 14) L2b|LINE|L2 108702 NM_018192 55214 Hs.374191 NM_018192 HPRD:17270 LEPREL1 MCVD|MLAT4|P3H2 leprecan-like 1 protein-coding 13-PTNLD9-TUMOR_peak_11872 chr12 4262790 4263010 + 8.02622 NA Intergenic Intergenic -120002 NM_001759 894 Hs.376071 NM_001759 HPRD:00451 CCND2 KIAK0002 cyclin D2 protein-coding 13-PTNLD9-TUMOR_peak_8093 chr10 98824986 98825247 + 8.02622 NA intron (NM_003061, intron 5 of 36) MER117|DNA|hAT-Charlie -37397 NR_038330 100505540 Hs.568878 NR_038330 ENSG00000234855 SLIT1-AS1 - SLIT1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_55929 chrX 56530522 56530620 + 8.02622 NA Intergenic L1PBa1|LINE|L1 -59455 NM_013444 29978 Hs.179309 NM_013444 HPRD:02224 UBQLN2 ALS15|CHAP1|DSK2|N4BP4|PLIC2 ubiquilin 2 protein-coding 13-PTNLD9-TUMOR_peak_14825 chr13 61330533 61330656 + 8.02622 NA Intergenic MLT1J2|LTR|ERVL-MaLR 83505 NR_047003 101926930 Hs.578045 NR_047003 LINC00378 - long intergenic non-protein coding RNA 378 ncRNA 13-PTNLD9-TUMOR_peak_20509 chr17 14479009 14479187 + 8.02622 NA Intergenic Intergenic 272041 NR_026880 84815 Hs.597458 NM_032729 MGC12916 - uncharacterized protein MGC12916 ncRNA 13-PTNLD9-TUMOR_peak_38180 chr4 37972373 37972495 + 8.02622 NA intron (NM_001253912, intron 2 of 20) intron (NM_001253912, intron 2 of 20) 10378 NM_006607 10744 Hs.668806 NM_006607 HPRD:09176 PTTG2 - pituitary tumor-transforming 2 protein-coding 13-PTNLD9-TUMOR_peak_46208 chr6 144651788 144651946 + 8.02622 NA intron (NM_007124, intron 1 of 73) intron (NM_007124, intron 1 of 73) 38994 NM_007124 7402 Hs.133135 NM_007124 HPRD:00547 UTRN DMDL|DRP|DRP1 utrophin protein-coding 13-PTNLD9-TUMOR_peak_27474 chr2 86510633 86510882 + 8.02622 NA intron (NM_001164730, intron 1 of 6) LTR87|LTR|ERVL? 54020 NM_022912 65055 Hs.368884 NM_022912 HPRD:07810 REEP1 C2orf23|HMN5B|SPG31 receptor accessory protein 1 protein-coding 13-PTNLD9-TUMOR_peak_14337 chr12 132380954 132381156 + 8.02622 NA intron (NM_003565, intron 3 of 27) intron (NM_003565, intron 3 of 27) 1776 NM_003565 8408 Hs.47061 NM_003565 HPRD:11933 ULK1 ATG1|ATG1A|UNC51|Unc51.1|hATG1 unc-51 like autophagy activating kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_13559 chr12 98850729 98850960 + 8.02622 NA promoter-TSS (NR_033801) promoter-TSS (NR_033801) 79 NR_033801 121456 Hs.620643 NR_033801 ENSG00000227825 SLC9A7P1 - solute carrier family 9, subfamily A (NHE7, cation proton antiporter 7), member 7 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_39716 chr4 155829425 155829545 + 8.02622 NA Intergenic Intergenic 126828 NM_001277173 166863 Hs.133095 NM_144979 HPRD:14517 RBM46 CT68 RNA binding motif protein 46 protein-coding 13-PTNLD9-TUMOR_peak_10891 chr11 90976923 90977035 + 8.02622 NA Intergenic Intergenic -687954 NR_039711 100616186 NR_039711 miRBase:MI0016852 MIR4490 - microRNA 4490 ncRNA 13-PTNLD9-TUMOR_peak_34192 chr3 32131138 32131438 + 8.02622 NA Intergenic MLT1I|LTR|ERVL-MaLR -16715 NM_015141 23171 Hs.82432 NM_015141 HPRD:10008 GPD1L GPD1-L glycerol-3-phosphate dehydrogenase 1-like protein-coding 13-PTNLD9-TUMOR_peak_18480 chr16 10300181 10300384 + 8.02622 NA Intergenic Intergenic -23671 NM_000833 2903 Hs.411472 NM_000833 HPRD:00698 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate receptor, ionotropic, N-methyl D-aspartate 2A protein-coding 13-PTNLD9-TUMOR_peak_13787 chr12 109893678 109893850 + 8.02622 NA intron (NM_031954, intron 6 of 6) intron (NM_031954, intron 6 of 6) 21391 NM_031954 83892 Hs.524731 NM_031954 HPRD:13762 KCTD10 BTBD28|ULRO61|hBACURD3 potassium channel tetramerization domain containing 10 protein-coding 13-PTNLD9-TUMOR_peak_12056 chr12 8004486 8004587 + 8.02622 NA intron (NM_001286237, intron 1 of 9) intron (NM_001286237, intron 1 of 9) 21099 NM_153449 144195 Hs.655169 NM_153449 HPRD:11573 SLC2A14 GLUT14|SLC2A3P3 solute carrier family 2 (facilitated glucose transporter), member 14 protein-coding 13-PTNLD9-TUMOR_peak_9592 chr11 40058729 40058956 + 8.02622 NA Intergenic LTR51|LTR|ERV1 255838 NR_047674 57689 Hs.745123 NM_020929 HPRD:12303 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 13-PTNLD9-TUMOR_peak_34407 chr3 45175390 45175582 + 8.02622 NA intron (NM_022842, intron 1 of 8) MamRep1527|LTR|LTR 12428 NM_022842 64866 Hs.476093 NM_022842 HPRD:16696 CDCP1 CD318|SIMA135|TRASK CUB domain containing protein 1 protein-coding 13-PTNLD9-TUMOR_peak_45659 chr6 86952204 86952316 + 8.02622 NA Intergenic L1PA7|LINE|L1 -563809 NR_003038 387066 Hs.292457 NR_003038 ENSG00000203875 SNHG5 C6orf160|LINC00044|NCRNA00044|U50HG|bA33E24.2 small nucleolar RNA host gene 5 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_1973 chr1 60225279 60225391 + 8.02622 NA intron (NM_001113411, intron 16 of 16) intron (NM_001113411, intron 16 of 16) -13132 NR_110627 101926944 Hs.720353 NR_110627 ENSG00000231816 LOC101926944 - uncharacterized LOC101926944 ncRNA 13-PTNLD9-TUMOR_peak_17580 chr15 71155932 71156043 + 8.02622 NA intron (NM_001284357, intron 1 of 16) LTR88b|LTR|Gypsy? -9383 NM_197958 55323 Hs.416755 NM_018357 HPRD:10966 LARP6 ACHN La ribonucleoprotein domain family, member 6 protein-coding 13-PTNLD9-TUMOR_peak_27131 chr2 66736788 66736917 + 8.02622 NA intron (NM_002398, intron 7 of 12) intron (NM_002398, intron 7 of 12) -64310 NR_110156 100507073 Hs.667940 NR_110156 LOC100507073 - uncharacterized LOC100507073 ncRNA 13-PTNLD9-TUMOR_peak_42822 chr5 158849501 158849639 + 8.02622 NA Intergenic L2a|LINE|L2 43714 NR_027110 285627 Hs.552766 NR_027110 ENSG00000253298 LOC285627 - uncharacterized LOC285627 ncRNA 13-PTNLD9-TUMOR_peak_8005 chr10 92728598 92728747 + 8.02622 NA Intergenic Intergenic -47640 NM_014391 27063 Hs.448589 NM_014391 HPRD:10647 ANKRD1 ALRP|C-193|CARP|CVARP|MCARP|bA320F15.2 ankyrin repeat domain 1 (cardiac muscle) protein-coding 13-PTNLD9-TUMOR_peak_40647 chr5 38265791 38265892 + 8.02622 NA intron (NM_001205301, intron 1 of 22) intron (NM_001205301, intron 1 of 22) 7330 NM_152403 133584 Hs.20103 NM_152403 HPRD:13433 EGFLAM AGRINL|AGRNL|PIKA EGF-like, fibronectin type III and laminin G domains protein-coding 13-PTNLD9-TUMOR_peak_29063 chr2 172081842 172082002 + 8.02622 NA intron (NM_001136554, intron 1 of 20) L1M4|LINE|L1 5902 NM_001136554 9874 Hs.744917 NM_012290 ENSG00000198586 TLK1 PKU-beta tousled-like kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_22077 chr17 74589499 74589622 + 8.02622 NA Intergenic MER21B|LTR|ERVL -7415 NM_006456 10610 Hs.592105 NM_006456 HPRD:10231 ST6GALNAC2 SAITL1|SIAT7|SIAT7B|SIATL1|ST6GalNAII|STHM ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2 protein-coding 13-PTNLD9-TUMOR_peak_15413 chr14 25560339 25560445 + 8.02622 NA Intergenic Intergenic -41297 NM_014178 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 amisyn syntaxin binding protein 6 (amisyn) protein-coding 13-PTNLD9-TUMOR_peak_28634 chr2 142088769 142088952 + 8.02622 NA intron (NM_018557, intron 3 of 90) LTR75B|LTR|ERVL 800410 NM_018557 53353 Hs.656461 NM_018557 HPRD:16383 LRP1B LRP-DIT|LRPDIT low density lipoprotein receptor-related protein 1B protein-coding 13-PTNLD9-TUMOR_peak_15112 chr13 110903648 110903809 + 8.02622 NA intron (NM_001845, intron 1 of 51) intron (NM_001845, intron 1 of 51) 55768 NM_001845 1282 Hs.17441 NM_001845 HPRD:00359 COL4A1 HANAC|ICH|POREN1|arresten collagen, type IV, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_51311 chr8 95048332 95048457 + 8.02622 NA Intergenic Intergenic 119115 NM_001161781 54704 Hs.22265 NM_018444 HPRD:16185 PDP1 PDH|PDP|PDPC|PPM2C pyruvate dehyrogenase phosphatase catalytic subunit 1 protein-coding 13-PTNLD9-TUMOR_peak_51126 chr8 70803892 70804030 + 8.02622 NA Intergenic Intergenic -56662 NM_030958 81796 Hs.152460 NM_030958 HPRD:15399 SLCO5A1 OATP-J|OATP-RP4|OATP5A1|OATPRP4|SLC21A15 solute carrier organic anion transporter family, member 5A1 protein-coding 13-PTNLD9-TUMOR_peak_12040 chr12 7187154 7187250 + 8.02622 NA TTS (NM_001733) TTS (NM_001733) 19222 NM_201442 716 Hs.458355 NM_001734 HPRD:00397 C1S - complement component 1, s subcomponent protein-coding 13-PTNLD9-TUMOR_peak_42476 chr5 145155733 145155855 + 8.02622 NA intron (NM_182960, intron 6 of 7) Tigger7|DNA|TcMar-Tigger 59138 NM_138492 153768 Hs.314261 NM_138492 HPRD:14479 PRELID2 - PRELI domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_33223 chr22 37908584 37908791 + 8.02622 NA intron (NM_014550, intron 3 of 19) intron (NM_014550, intron 3 of 19) 6523 NM_014550 29775 Hs.57973 NM_014550 HPRD:06233 CARD10 BIMP1|CARMA3 caspase recruitment domain family, member 10 protein-coding 13-PTNLD9-TUMOR_peak_46348 chr6 152723221 152723400 + 8.02622 NA intron (NM_182961, intron 46 of 145) LTR78|LTR|ERV1 21645 NR_120501 100505475 Hs.571203 NR_120501 SYNE1-AS1 - SYNE1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_30174 chr2 241075683 241075830 + 8.02622 NA promoter-TSS (NM_001163424) promoter-TSS (NM_001163424) 8 NM_138336 150678 Hs.293884 NM_138336 HPRD:17306 MYEOV2 - myeloma overexpressed 2 protein-coding 13-PTNLD9-TUMOR_peak_26359 chr2 26553021 26553132 + 8.02622 NA intron (NM_153835, intron 1 of 11) L1MD2|LINE|L1 -11106 NM_001145169 165082 Hs.631878 NM_153835 HPRD:11009 GPR113 PGR23|hGPCR37 G protein-coupled receptor 113 protein-coding 13-PTNLD9-TUMOR_peak_56247 chrX 91008281 91008392 + 8.02622 NA Intergenic L1PA3|LINE|L1 -82124 NM_001168363 27328 Hs.655673 NM_014522 HPRD:02215 PCDH11X PCDH-X|PCDH11|PCDHX|PPP1R119 protocadherin 11 X-linked protein-coding 13-PTNLD9-TUMOR_peak_14833 chr13 67209691 67209919 + 8.02622 NA intron (NM_020403, intron 2 of 3) intron (NM_020403, intron 2 of 3) -189496 NR_046527 100874064 Hs.569284 NR_046527 ENSG00000228842 PCDH9-AS2 - PCDH9 antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_30402 chr20 10152917 10153086 + 8.02622 NA intron (NR_040710, intron 2 of 4) CpG -46476 NM_003081 6616 Hs.167317 NM_003081 HPRD:02637 SNAP25 RIC-4|RIC4|SEC9|SNAP|SNAP-25|bA416N4.2|dJ1068F16.2 synaptosomal-associated protein, 25kDa protein-coding 13-PTNLD9-TUMOR_peak_38099 chr4 24262794 24263031 + 8.02622 NA Intergenic Intergenic 259001 NR_030299 693158 NR_030299 miRBase:MI0003580 MIR573 MIRN573|hsa-mir-573 microRNA 573 ncRNA 13-PTNLD9-TUMOR_peak_41308 chr5 74701277 74701398 + 8.02622 NA intron (NM_005713, intron 8 of 17) L2|LINE|L2 68344 NM_001130996 3156 Hs.628096 NM_000859 HPRD:00836 HMGCR LDLCQ3 3-hydroxy-3-methylglutaryl-CoA reductase protein-coding 13-PTNLD9-TUMOR_peak_6916 chr10 34793595 34793704 + 8.02622 NA intron (NM_001184791, intron 3 of 20) intron (NM_001184791, intron 3 of 20) 310604 NM_001184791 56288 Hs.131489 NM_019619 HPRD:05994 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 13-PTNLD9-TUMOR_peak_30103 chr2 237591672 237591866 + 8.02622 NA Intergenic Intergenic 113389 NM_020311 57007 Hs.471751 NM_020311 HPRD:09882 ACKR3 CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1 atypical chemokine receptor 3 protein-coding 13-PTNLD9-TUMOR_peak_38436 chr4 56038953 56039066 + 8.02622 NA Intergenic Intergenic -47247 NM_002253 3791 Hs.479756 NM_002253 HPRD:01867 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor (a type III receptor tyrosine kinase) protein-coding 13-PTNLD9-TUMOR_peak_27973 chr2 109605645 109605759 + 8.02622 NA 5' UTR (NM_022336, exon 1 of 12) 5' UTR (NM_022336, exon 1 of 12) 126 NM_022336 10913 Hs.171971 NM_022336 HPRD:04974 EDAR DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1 ectodysplasin A receptor protein-coding 13-PTNLD9-TUMOR_peak_55722 chrX 38592258 38592399 + 8.02622 NA Intergenic Intergenic -68357 NM_021242 58526 Hs.522605 NM_021242 HPRD:06732 MID1IP1 G12-like|MIG12|S14R|STRAIT11499|THRSPL MID1 interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_46420 chr6 158833095 158833359 + 8.02622 NA intron (NM_001007466, intron 1 of 12) intron (NM_001007466, intron 1 of 12) 99535 NM_020245 56995 Hs.486993 NM_020245 HPRD:18246 TULP4 TUSP tubby like protein 4 protein-coding 13-PTNLD9-TUMOR_peak_24340 chr19 17799096 17799212 + 8.02622 NA promoter-TSS (NM_001080421) promoter-TSS (NM_001080421) -146 NM_001080421 23025 Hs.164502 NM_001080421 ENSG00000130477 UNC13A Munc13-1 unc-13 homolog A (C. elegans) protein-coding 13-PTNLD9-TUMOR_peak_12241 chr12 15361940 15362074 + 8.02622 NA intron (NM_032918, intron 2 of 4) intron (NM_032918, intron 2 of 4) 12404 NM_032918 85004 Hs.199487 NM_032918 HPRD:15238 RERG - RAS-like, estrogen-regulated, growth inhibitor protein-coding 13-PTNLD9-TUMOR_peak_491 chr1 15606171 15606309 + 8.02622 NA intron (NM_052929, intron 3 of 30) MLT1K|LTR|ERVL-MaLR 32472 NM_052929 114827 Hs.659997 NM_052929 ENSG00000142621 FHAD1 - forkhead-associated (FHA) phosphopeptide binding domain 1 protein-coding 13-PTNLD9-TUMOR_peak_32048 chr21 28853268 28853411 + 8.02622 NA intron (NR_049807, intron 3 of 4) intron (NR_049807, intron 3 of 4) -241359 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 13-PTNLD9-TUMOR_peak_8537 chr10 125995551 125995893 + 8.02622 NA Intergenic MER45B|DNA|hAT-Tip100 111823 NM_000274 4942 Hs.523332 NM_000274 HPRD:02021 OAT GACR|HOGA|OATASE|OKT ornithine aminotransferase protein-coding 13-PTNLD9-TUMOR_peak_30424 chr20 11248102 11248196 + 8.02622 NA non-coding (NR_038972, exon 2 of 2) non-coding (NR_038972, exon 2 of 2) 5882 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 13-PTNLD9-TUMOR_peak_51443 chr8 102268150 102268320 + 8.02622 NA Intergenic Intergenic -49943 NM_001267709 51123 Hs.374485 NM_016096 HPRD:13688 ZNF706 PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 13-PTNLD9-TUMOR_peak_26952 chr2 54857145 54857327 + 8.02622 NA intron (NM_178313, intron 14 of 30) intron (NM_178313, intron 14 of 30) 71705 NM_178313 6711 Hs.503178 NM_003128 HPRD:01683 SPTBN1 ELF|HEL102|SPTB2|betaSpII spectrin, beta, non-erythrocytic 1 protein-coding 13-PTNLD9-TUMOR_peak_13688 chr12 106424320 106424476 + 8.02622 NA Intergenic Intergenic 109413 NM_014840 9891 Hs.524692 NM_014840 HPRD:12171 NUAK1 ARK5 NUAK family, SNF1-like kinase, 1 protein-coding 13-PTNLD9-TUMOR_peak_8569 chr10 127095611 127096089 + 8.02622 NA Intergenic L1MA3|LINE|L1 -167090 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_56358 chrX 112076110 112076214 + 8.02622 NA intron (NM_133265, intron 1 of 11) intron (NM_133265, intron 1 of 11) 7881 NM_133265 154796 Hs.528051 NM_133265 HPRD:02327 AMOT - angiomotin protein-coding 13-PTNLD9-TUMOR_peak_52219 chr8 135790796 135790956 + 8.02622 NA Intergenic L2c|LINE|L2 21974 NR_029666 407030 NR_029666 miRBase:MI0000441 MIR30B MIRN30B microRNA 30b ncRNA 13-PTNLD9-TUMOR_peak_52004 chr8 128961962 128962178 + 8.02622 NA intron (NR_003367, intron 2 of 7) intron (NR_003367, intron 2 of 7) -1101 NR_103558 641384 Hs.629674 NM_001037234 TMEM75 - transmembrane protein 75 ncRNA 13-PTNLD9-TUMOR_peak_30392 chr20 9598723 9598835 + 8.02622 NA intron (NM_177990, intron 3 of 9) intron (NM_177990, intron 3 of 9) -103134 NR_109957 101929329 Hs.589878 NR_109957 ENSG00000225988 LAMP5-AS1 - LAMP5 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_51795 chr8 123676542 123676650 + 8.02622 NA Intergenic MLT1H2|LTR|ERVL-MaLR -117305 NM_014943 22882 Hs.377090 NM_014943 HPRD:16458 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 13-PTNLD9-TUMOR_peak_45963 chr6 117690609 117690766 + 8.02622 NA intron (NM_002944, intron 17 of 42) AluY|SINE|Alu 56331 NM_002944 6098 Hs.1041 NM_002944 HPRD:01295 ROS1 MCF3|ROS|c-ros-1 ROS proto-oncogene 1 , receptor tyrosine kinase protein-coding 13-PTNLD9-TUMOR_peak_41114 chr5 67521114 67521277 + 8.02622 NA intron (NM_181523, intron 1 of 15) intron (NM_181523, intron 1 of 15) 9611 NM_181523 5295 Hs.132225 NM_181504 HPRD:01381 PIK3R1 AGM7|GRB1|p85|p85-ALPHA phosphoinositide-3-kinase, regulatory subunit 1 (alpha) protein-coding 13-PTNLD9-TUMOR_peak_55633 chrX 21817056 21817271 + 8.02622 NA Intergenic Intergenic -40493 NM_015884 51360 Hs.443490 NM_015884 HPRD:02243 MBTPS2 BRESEK|IFAP|KFSD|KFSDX|OLMSX|S2P membrane-bound transcription factor peptidase, site 2 protein-coding 13-PTNLD9-TUMOR_peak_15012 chr13 100560652 100560760 + 8.02622 NA non-coding (NR_104592, exon 10 of 10) non-coding (NR_104592, exon 10 of 10) 48713 NR_120421 101927437 Hs.619936 NR_120421 LOC101927437 - uncharacterized LOC101927437 ncRNA 13-PTNLD9-TUMOR_peak_11405 chr11 119352136 119352305 + 8.02622 NA intron (NR_034160, intron 3 of 3) intron (NR_034160, intron 3 of 3) -57974 NM_006288 7070 Hs.644697 NM_006288 THY1 CD90 Thy-1 cell surface antigen protein-coding 13-PTNLD9-TUMOR_peak_43567 chr6 4008729 4008880 + 8.02622 NA Intergenic Intergenic -12765 NM_003913 8899 Hs.159014 NM_003913 HPRD:09087 PRPF4B PR4H|PRP4|PRP4H|PRP4K|dJ1013A10.1 pre-mRNA processing factor 4B protein-coding 13-PTNLD9-TUMOR_peak_14658 chr13 42242276 42242531 + 8.02622 NA intron (NM_015058, intron 37 of 44) intron (NM_015058, intron 37 of 44) -99872 NR_049803 100847026 NR_049803 MIR5006 - microRNA 5006 ncRNA 13-PTNLD9-TUMOR_peak_27146 chr2 68067743 68067853 + 8.02622 NA Intergenic Intergenic -15104 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LOC101927701 - uncharacterized LOC101927701 ncRNA 13-PTNLD9-TUMOR_peak_8621 chr10 130991580 130991703 + 8.02622 NA Intergenic Intergenic -273813 NM_002412 4255 Hs.501522 NM_002412 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 13-PTNLD9-TUMOR_peak_39071 chr4 110842525 110842686 + 8.02622 NA intron (NM_001963, intron 1 of 23) intron (NM_001963, intron 1 of 23) 8565 NM_001178130 1950 Hs.419815 NM_001963 HPRD:00578 EGF HOMG4|URG epidermal growth factor protein-coding 13-PTNLD9-TUMOR_peak_55569 chrX 15287829 15287969 + 8.02622 NA intron (NM_001168530, intron 1 of 6) intron (NM_001168530, intron 1 of 6) 394 NM_001168530 140462 Hs.19404 NM_024087 HPRD:06452 ASB9 - ankyrin repeat and SOCS box containing 9 protein-coding 13-PTNLD9-TUMOR_peak_16179 chr14 70464707 70464828 + 8.02622 NA intron (NM_001034852, intron 7 of 11) intron (NM_001034852, intron 7 of 11) 82167 NM_182936 6547 Hs.337696 NM_033262 HPRD:09723 SLC8A3 NCX3 solute carrier family 8 (sodium/calcium exchanger), member 3 protein-coding 13-PTNLD9-TUMOR_peak_39604 chr4 150387178 150387367 + 8.02622 NA Intergenic Intergenic -612154 NM_001040260 166614 Hs.591683 NM_152619 HPRD:13122 DCLK2 CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2 doublecortin-like kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_51955 chr8 127747971 127748106 + 8.02622 NA Intergenic Intergenic -177327 NM_174911 157638 Hs.741352 NM_174911 HPRD:11403 FAM84B BCMP101|NSE2 family with sequence similarity 84, member B protein-coding 13-PTNLD9-TUMOR_peak_41324 chr5 75552179 75552313 + 8.02622 NA intron (NM_001297716, intron 4 of 12) intron (NM_001297716, intron 4 of 12) -146834 NM_006633 10788 Hs.291030 NM_006633 HPRD:09253 IQGAP2 - IQ motif containing GTPase activating protein 2 protein-coding 13-PTNLD9-TUMOR_peak_31198 chr20 44258255 44258390 + 8.02622 NA promoter-TSS (NM_080753) promoter-TSS (NM_080753) -63 NM_080753 140832 Hs.199380 NM_080753 WFDC10A C20orf146|WAP10|dJ688G8.3 WAP four-disulfide core domain 10A protein-coding 13-PTNLD9-TUMOR_peak_31157 chr20 43538844 43538983 + 8.02622 NA exon (NM_001124756, exon 1 of 15) exon (NM_001124756, exon 1 of 15) 210 NM_001124756 80336 Hs.641481 NM_001124756 ENSG00000101104 PABPC1L C20orf119|PABPC1L1|dJ1069P2.3|ePAB poly(A) binding protein, cytoplasmic 1-like protein-coding 13-PTNLD9-TUMOR_peak_15937 chr14 61116149 61116272 + 8.02622 NA promoter-TSS (NM_005982) promoter-TSS (NM_005982) -55 NM_005982 6495 Hs.633506 NM_005982 SIX1 BOS3|DFNA23|TIP39 SIX homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_26133 chr2 11356462 11356671 + 8.02622 NA intron (NM_004850, intron 12 of 32) AluSx|SINE|Alu 61068 NM_001282712 130814 Hs.274415 NM_152391 HPRD:12810 PQLC3 C2orf22 PQ loop repeat containing 3 protein-coding 13-PTNLD9-TUMOR_peak_11188 chr11 111402546 111402647 + 8.02622 NA intron (NM_207430, intron 4 of 6) intron (NM_207430, intron 4 of 6) -8637 NM_001258390 143903 Hs.503831 NM_178834 HPRD:17299 LAYN - layilin protein-coding 13-PTNLD9-TUMOR_peak_28875 chr2 160838781 160838948 + 8.02622 NA intron (NM_001007267, intron 13 of 26) MER5A|DNA|hAT-Charlie -77597 NM_001198759 100526664 Hs.153563 NM_001198759 ENSG00000248672 LY75-CD302 - LY75-CD302 readthrough protein-coding 13-PTNLD9-TUMOR_peak_12251 chr12 16276709 16276863 + 8.02622 NA Intergenic Zaphod|DNA|hAT-Tip100 153833 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15, member 5 protein-coding 13-PTNLD9-TUMOR_peak_39713 chr4 155548042 155548221 + 8.02622 NA Intergenic CpG -14229 NM_021870 2266 Hs.727584 NM_000509 HPRD:00621 FGG - fibrinogen gamma chain protein-coding 13-PTNLD9-TUMOR_peak_46229 chr6 147311481 147311605 + 8.02622 NA intron (NR_034115, intron 6 of 10) intron (NR_034115, intron 6 of 10) -186583 NR_003954 729176 Hs.486708 NR_003954 KATNBL1P6 - katanin p80 subunit B-like 1 pseudogene 6 pseudo 13-PTNLD9-TUMOR_peak_31511 chr20 50673177 50673351 + 8.02622 NA Intergenic MER5A|DNA|hAT-Charlie 135260 NM_199426 55734 Hs.473082 NM_018197 HPRD:15728 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 13-PTNLD9-TUMOR_peak_12149 chr12 12095126 12095236 + 8.02622 NA Intergenic Intergenic -16074 NR_046487 100873754 NR_046487 ENSG00000207449 RNU6-19P RNU6-19 RNA, U6 small nuclear 19, pseudogene snRNA 13-PTNLD9-TUMOR_peak_29918 chr2 224760513 224760629 + 8.02622 NA intron (NM_020830, intron 6 of 11) intron (NM_020830, intron 6 of 11) 49481 NM_020830 57590 Hs.368359 NM_020830 HPRD:15663 WDFY1 FENS-1|WDF1|ZFYVE17 WD repeat and FYVE domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_47063 chr7 23393023 23393163 + 8.02622 NA intron (NM_006547, intron 5 of 14) intron (NM_006547, intron 5 of 14) 54153 NM_138446 115416 Hs.87385 NM_138446 MALSU1 C7orf30|mtRsfA mitochondrial assembly of ribosomal large subunit 1 protein-coding 13-PTNLD9-TUMOR_peak_38055 chr4 18937576 18937703 + 8.02622 NA Intergenic Intergenic -914156 NM_153686 254251 Hs.446201 NM_153686 HPRD:10088 LCORL MLR1 ligand dependent nuclear receptor corepressor-like protein-coding 13-PTNLD9-TUMOR_peak_14778 chr13 51904965 51905144 + 8.02622 NA Intergenic Intergenic -10114 NM_001101320 647174 Hs.685891 NM_001101320 ENSG00000253309 SERPINE3 - serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 3 protein-coding 13-PTNLD9-TUMOR_peak_34360 chr3 43256230 43256440 + 8.02622 NA Intergenic Intergenic -71669 NM_017719 54861 Hs.476052 NM_017719 HPRD:18082 SNRK HSNFRK SNF related kinase protein-coding 13-PTNLD9-TUMOR_peak_25308 chr19 49078076 49078184 + 8.02622 NA promoter-TSS (NM_004605) promoter-TSS (NM_004605) -863 NM_004605 6820 Hs.369331 NM_004605 HPRD:04991 SULT2B1 HSST2 sulfotransferase family, cytosolic, 2B, member 1 protein-coding 13-PTNLD9-TUMOR_peak_32921 chr22 23775589 23775701 + 8.02622 NA promoter-TSS (NR_110538) promoter-TSS (NR_110538) -106 NR_110538 101929374 Hs.616963 NR_110538 LOC101929374 - uncharacterized LOC101929374 ncRNA 13-PTNLD9-TUMOR_peak_44892 chr6 38229892 38230032 + 8.02622 NA intron (NM_001099272, intron 8 of 10) intron (NM_001099272, intron 8 of 10) 333881 NM_001172418 114781 Hs.603858 NM_052893 HPRD:12543 BTBD9 dJ322I12.1 BTB (POZ) domain containing 9 protein-coding 13-PTNLD9-TUMOR_peak_16833 chr15 26266150 26266285 + 8.02622 NA intron (NR_040082, intron 2 of 4) intron (NR_040082, intron 2 of 4) -94743 NR_038851 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 13-PTNLD9-TUMOR_peak_14202 chr12 124511499 124511598 + 8.02622 NA intron (NM_001204299, intron 2 of 4) MLT2D|LTR|ERVL 53786 NM_001204299 100533183 Hs.432901 NM_001204299 ENSG00000255906 ZNF664-FAM101A - protein FAM101A protein-coding 13-PTNLD9-TUMOR_peak_1217 chr1 38701588 38701704 + 8.02622 NA Intergenic L2a|LINE|L2 -21207 NR_038928 339442 Hs.434245 NR_038928 ENSG00000237290 LINC01343 - long intergenic non-protein coding RNA 1343 ncRNA 13-PTNLD9-TUMOR_peak_26108 chr2 10725038 10725242 + 8.02622 NA intron (NR_048552, intron 18 of 19) intron (NR_048552, intron 18 of 19) 104973 NM_024894 79954 Hs.222494 NM_024894 HPRD:07849 NOL10 PQBP5 nucleolar protein 10 protein-coding 13-PTNLD9-TUMOR_peak_627 chr1 21900678 21900801 + 8.02622 NA intron (NM_000478, intron 9 of 11) MIRb|SINE|MIR 64881 NM_001177520 249 Hs.75431 NM_000478 HPRD:01377 ALPL AP-TNAP|APTNAP|HOPS|TNAP|TNSALP alkaline phosphatase, liver/bone/kidney protein-coding 13-PTNLD9-TUMOR_peak_42756 chr5 154727498 154727603 + 8.02622 NA Intergenic LTR10C|LTR|ERV1 334290 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 13-PTNLD9-TUMOR_peak_8939 chr11 7478562 7478696 + 8.02622 NA intron (NR_103855, intron 3 of 4) L2c|LINE|L2 8437 NR_103855 100506258 Hs.661614 NR_103855 ENSG00000251364 LOC100506258 - uncharacterized LOC100506258 ncRNA 13-PTNLD9-TUMOR_peak_55770 chrX 46024898 46025110 + 8.02622 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 162105 NR_110388 101927574 Hs.350952 NR_110388 LINC01186 - long intergenic non-protein coding RNA 1186 ncRNA 13-PTNLD9-TUMOR_peak_41908 chr5 124647492 124647716 + 8.02622 NA intron (NR_109882, intron 4 of 5) intron (NR_109882, intron 4 of 5) -181350 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LOC101927460 - uncharacterized LOC101927460 ncRNA 13-PTNLD9-TUMOR_peak_9996 chr11 61121429 61121523 + 8.02622 NA intron (NM_001300763, intron 3 of 6) intron (NM_001300763, intron 3 of 6) 2885 NM_001161452 220002 Hs.22546 NM_153611 HPRD:11316 CYB561A3 CYBASC3|LCYTB cytochrome b561 family, member A3 protein-coding 13-PTNLD9-TUMOR_peak_27922 chr2 106199497 106199654 + 8.02622 NA Intergenic Intergenic 27441 NR_038891 285000 Hs.737917 NR_038891 LOC285000 - uncharacterized LOC285000 ncRNA 13-PTNLD9-TUMOR_peak_37159 chr3 188666477 188666658 + 8.02622 NA Intergenic MIRc|SINE|MIR -1139 NR_046873 100874043 Hs.616287 NR_046873 TPRG1-AS1 - TPRG1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_43808 chr6 12242069 12242488 + 8.02622 NA Intergenic Intergenic -48251 NM_001168319 1906 Hs.511899 NM_001955 HPRD:07030 EDN1 ARCND3|ET1|HDLCQ7|PPET1|QME endothelin 1 protein-coding 13-PTNLD9-TUMOR_peak_32248 chr21 37312736 37312854 + 8.02622 NA Intergenic Intergenic 64170 NR_110418 101928269 Hs.589909 NR_110418 ENSG00000159216 LOC101928269 - uncharacterized LOC101928269 ncRNA 13-PTNLD9-TUMOR_peak_7722 chr10 73905932 73906031 + 8.02622 NA intron (NM_001198800, intron 7 of 9) intron (NM_001198800, intron 7 of 9) -57191 NM_001134434 9806 Hs.523009 NM_014767 HPRD:12146 SPOCK2 testican-2 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2 protein-coding 13-PTNLD9-TUMOR_peak_9174 chr11 15002489 15002583 + 8.02622 NA Intergenic Intergenic -8704 NM_001033952 796 Hs.37058 NM_001741 HPRD:00238 CALCA CALC1|CGRP|CGRP-I|CGRP1|CT|KC calcitonin-related polypeptide alpha protein-coding 13-PTNLD9-TUMOR_peak_42358 chr5 140749713 140749836 + 8.02622 NA promoter-TSS (NM_018924) promoter-TSS (NM_018924) -188 NM_018924 56102 Hs.368160 NM_018924 HPRD:09391 PCDHGB3 PCDH-GAMMA-B3 protocadherin gamma subfamily B, 3 protein-coding 13-PTNLD9-TUMOR_peak_34137 chr3 27575445 27575584 + 8.02622 NA Intergenic Intergenic -49603 NM_001258379 9497 Hs.250072 NM_003615 HPRD:04521 SLC4A7 NBC2|NBC3|NBCN1|SBC2|SLC4A6 solute carrier family 4, sodium bicarbonate cotransporter, member 7 protein-coding 13-PTNLD9-TUMOR_peak_7974 chr10 90640173 90640498 + 8.02622 NA 5' UTR (NM_020799, exon 1 of 11) 5' UTR (NM_020799, exon 1 of 11) 391 NM_020799 57559 Hs.16229 NM_020799 HPRD:16486 STAMBPL1 ALMalpha|AMSH-FP|AMSH-LP|bA399O19.2 STAM binding protein-like 1 protein-coding 13-PTNLD9-TUMOR_peak_45696 chr6 89692563 89692747 + 8.02622 NA Intergenic Intergenic -19307 NM_001286428 8732 Hs.567378 NM_003800 HPRD:04621 RNGTT CAP1A|HCE|HCE1|hCAP RNA guanylyltransferase and 5'-phosphatase protein-coding 13-PTNLD9-TUMOR_peak_14744 chr13 49593181 49593296 + 8.02622 NA intron (NR_103528, intron 2 of 25) L1PA3|LINE|L1 42493 NR_103528 22862 Hs.508010 NM_014923 HPRD:13548 FNDC3A FNDC3|HUGO|bA203I16.1|bA203I16.5 fibronectin type III domain containing 3A protein-coding 13-PTNLD9-TUMOR_peak_2295 chr1 84640048 84640183 + 8.02622 NA intron (NM_001242861, intron 2 of 10) L2c|LINE|L2 -7200 NM_001242862 5567 Hs.487325 NM_002731 HPRD:01482 PRKACB PKA C-beta|PKACB protein kinase, cAMP-dependent, catalytic, beta protein-coding 13-PTNLD9-TUMOR_peak_43932 chr6 16137525 16137644 + 8.02622 NA intron (NM_013262, intron 2 of 6) intron (NM_013262, intron 2 of 6) -4203 NR_039782 100616269 NR_039782 MIR4639 - microRNA 4639 ncRNA 13-PTNLD9-TUMOR_peak_39633 chr4 152284036 152284173 + 8.02622 NA Intergenic Intergenic -46294 NM_001109977 729830 Hs.633810 NM_001109977 ENSG00000164142 FAM160A1 - family with sequence similarity 160, member A1 protein-coding 13-PTNLD9-TUMOR_peak_6463 chr10 11692027 11692130 + 8.02622 NA Intergenic Intergenic -38290 NM_014688 9712 Hs.498661 NM_014688 ENSG00000148429 USP6NL RNTRE|TRE2NL|USP6NL-IT1 USP6 N-terminal like protein-coding 13-PTNLD9-TUMOR_peak_54332 chr9 109801986 109802089 + 8.02622 NA intron (NR_031752, intron 1 of 3) intron (NR_031752, intron 1 of 3) 46679 NR_031752 100313841 NR_031752 miRBase:MI0010637 MIR548Q - microRNA 548q ncRNA 13-PTNLD9-TUMOR_peak_44122 chr6 24395369 24395504 + 8.02622 NA Intergenic Intergenic -7700 NM_001286266 57380 Hs.658612 NM_020662 HPRD:17603 MRS2 HPT|MRS2L MRS2 magnesium transporter protein-coding 13-PTNLD9-TUMOR_peak_6300 chr10 3269305 3269413 + 8.02622 NA Intergenic Intergenic -54326 NM_001242307 10531 Hs.528300 NM_014889 HPRD:07142 PITRM1 MP1|PreP pitrilysin metallopeptidase 1 protein-coding 13-PTNLD9-TUMOR_peak_48700 chr7 104294477 104294618 + 8.02622 NA intron (NM_199000, intron 1 of 2) intron (NM_199000, intron 1 of 2) 149992 NR_034141 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_22416 chr18 995714 995855 + 8.02622 NA Intergenic Intergenic 90587 NM_001117 116 Hs.531719 NM_001117 HPRD:02369 ADCYAP1 PACAP adenylate cyclase activating polypeptide 1 (pituitary) protein-coding 13-PTNLD9-TUMOR_peak_50199 chr8 19243478 19243572 + 8.02622 NA intron (NM_022071, intron 8 of 9) intron (NM_022071, intron 8 of 9) 72038 NM_001174159 63898 Hs.303208 NM_022071 HPRD:08340 SH2D4A PPP1R38|SH2A SH2 domain containing 4A protein-coding 13-PTNLD9-TUMOR_peak_44393 chr6 28973361 28973489 + 8.02622 NA promoter-TSS (NM_001010877).5 promoter-TSS (NM_001010877).5 -388 NM_001010877 282890 Hs.148218 NM_001010877 HPRD:18325 ZNF311 zf31 zinc finger protein 311 protein-coding 13-PTNLD9-TUMOR_peak_8667 chr10 134360429 134360543 + 8.02622 NA intron (NM_005539, intron 1 of 15) intron (NM_005539, intron 1 of 15) 9133 NM_005539 3632 Hs.523360 NM_005539 HPRD:02521 INPP5A 5PTASE inositol polyphosphate-5-phosphatase, 40kDa protein-coding 13-PTNLD9-TUMOR_peak_2377 chr1 88261108 88261205 + 8.02622 NA Intergenic Intergenic -423818 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 13-PTNLD9-TUMOR_peak_13438 chr12 87834038 87834167 + 8.02622 NA Intergenic LTR8A|LTR|ERV1 344386 NR_033410 400058 Hs.572212 NR_033410 MKRN9P MKRN5|MKRN9|MKRNP6|RNF65|ZNF127L3 makorin ring finger protein 9, pseudogene pseudo 13-PTNLD9-TUMOR_peak_35089 chr3 89074446 89074647 + 8.02622 NA Intergenic Intergenic -82128 NM_005233 2042 Hs.123642 NM_005233 HPRD:01555 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 13-PTNLD9-TUMOR_peak_31362 chr20 48061854 48062102 + 8.02622 NA intron (NM_004975, intron 1 of 1) intron (NM_004975, intron 1 of 1) 37203 NM_004975 3745 Hs.84244 NM_004975 KCNB1 DRK1|KV2.1|h-DRK1 potassium voltage-gated channel, Shab-related subfamily, member 1 protein-coding 13-PTNLD9-TUMOR_peak_25913 chr2 383962 384088 + 8.02622 NA Intergenic Intergenic -95717 NM_001002919 285016 Hs.355207 NM_001002919 HPRD:17344 FAM150B PRO1097|RGPG542 family with sequence similarity 150, member B protein-coding 13-PTNLD9-TUMOR_peak_12948 chr12 55413678 55413797 + 8.02622 NA promoter-TSS (NM_021191) promoter-TSS (NM_021191) 8 NM_021191 58158 Hs.591024 NM_021191 HPRD:14826 NEUROD4 ATH-3|ATH3|Atoh3|MATH-3|bHLHa4 neuronal differentiation 4 protein-coding 13-PTNLD9-TUMOR_peak_13465 chr12 90749585 90749745 + 8.02622 NA Intergenic Intergenic -562135 NR_038868 439916 Hs.350600 NM_001039384 ENSG00000196243 LINC00615 C12orf37 long intergenic non-protein coding RNA 615 ncRNA 13-PTNLD9-TUMOR_peak_17176 chr15 44267185 44267416 + 8.02622 NA intron (NR_104455, intron 1 of 14) intron (NR_104455, intron 1 of 14) -96931 NR_003571 728758 Hs.658099 NR_003571 PIN4P1 - protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_20214 chr17 1125757 1125908 + 8.02622 NA Intergenic Intergenic -35216 NM_001159746 29 Hs.159306 NM_001092 HPRD:02649 ABR MDB active BCR-related protein-coding 13-PTNLD9-TUMOR_peak_34844 chr3 64337993 64338168 + 8.02622 NA Intergenic Intergenic -126949 NM_198859 166336 Hs.148105 NM_198859 HPRD:16342 PRICKLE2 EPM5 prickle homolog 2 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_32544 chr21 46143596 46143752 + 8.02622 NA Intergenic CpG -12179 NM_001272037 54084 Hs.660703 NM_144991 HPRD:09845 TSPEAR C21orf29|DFNB98|TSP-EAR thrombospondin-type laminin G domain and EAR repeats protein-coding 13-PTNLD9-TUMOR_peak_51396 chr8 101408303 101408480 + 8.02622 NA Intergenic Intergenic 13400 NR_039681 100616451 NR_039681 miRBase:MI0016822 MIR4471 - microRNA 4471 ncRNA 13-PTNLD9-TUMOR_peak_23120 chr18 46056248 46056423 + 8.02622 NA Intergenic Intergenic -9092 NM_014772 9811 Hs.145230 NM_014772 HPRD:11083 CTIF Gm672|KIAA0427 CBP80/20-dependent translation initiation factor protein-coding 13-PTNLD9-TUMOR_peak_23244 chr18 54098922 54099042 + 8.02622 NA Intergenic L3|LINE|CR1 206938 NM_004786 9352 Hs.114412 NM_004786 TXNL1 HEL-S-114|TRP32|TXL-1|TXNL|Txl thioredoxin-like 1 protein-coding 13-PTNLD9-TUMOR_peak_6603 chr10 18899510 18899725 + 8.02622 NA intron (NM_182543, intron 5 of 10) intron (NM_182543, intron 5 of 10) 40949 NM_182543 221078 Hs.396175 NM_182543 HPRD:14843 NSUN6 4933414E04Rik|ARL5B-AS1|NOPD1 NOP2/Sun domain family, member 6 protein-coding 13-PTNLD9-TUMOR_peak_13587 chr12 101624627 101624730 + 8.02622 NA Intergenic Intergenic -20662 NM_145913 160728 Hs.444536 NM_145913 SLC5A8 AIT|SMCT|SMCT1 solute carrier family 5 (sodium/monocarboxylate cotransporter), member 8 protein-coding 13-PTNLD9-TUMOR_peak_41434 chr5 81461811 81461966 + 8.02622 NA intron (NM_031482, intron 4 of 7) intron (NM_031482, intron 4 of 7) 112347 NM_001025 6228 Hs.527193 NM_001025 HPRD:04729 RPS23 S23 ribosomal protein S23 protein-coding 13-PTNLD9-TUMOR_peak_50562 chr8 32191986 32192126 + 8.02622 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) -106206 NR_047475 100874286 Hs.147060 NR_047475 NRG1-IT3 - NRG1 intronic transcript 3 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_7897 chr10 84502300 84502425 + 8.02622 NA intron (NM_001165972, intron 3 of 8) intron (NM_001165972, intron 3 of 8) -509686 NR_120666 101929590 Hs.733268 NR_120666 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_24610 chr19 29372698 29372808 + 8.02622 NA Intergenic Intergenic -83285 NR_027318 148145 Hs.112651 NR_027318 ENSG00000267339 LINC00906 - long intergenic non-protein coding RNA 906 ncRNA 13-PTNLD9-TUMOR_peak_7267 chr10 48038934 48039046 + 8.02622 NA Intergenic Intergenic -116953 NR_033407 1517 Hs.568350 NR_033407 CTSLP2 CTSL1P2|CTSL1P5|CTSL1P7|CTSLL2|CTSLL5|CTSLL7|CTSLP5|CTSLP7|bA144G6.6|bA342C24.4 cathepsin L pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_10311 chr11 66462308 66462447 + 8.02622 NA intron (NM_006946, intron 20 of 36) intron (NM_006946, intron 20 of 36) -16985 NM_001286135 83759 Hs.618713 NM_031492 HPRD:15230 RBM4B RBM30|RBM4L|ZCCHC15|ZCCHC21B|ZCRB3B RNA binding motif protein 4B protein-coding 13-PTNLD9-TUMOR_peak_24870 chr19 38488759 38488942 + 8.02622 NA intron (NM_015073, intron 1 of 21) intron (NM_015073, intron 1 of 21) 90989 NM_015073 23094 Hs.655502 NM_015073 HPRD:18755 SIPA1L3 SPAL3 signal-induced proliferation-associated 1 like 3 protein-coding 13-PTNLD9-TUMOR_peak_30389 chr20 9388861 9388956 + 8.02622 NA intron (NM_001172646, intron 21 of 37) intron (NM_001172646, intron 21 of 37) 100461 NM_000933 5332 Hs.472101 NM_000933 HPRD:02885 PLCB4 ARCND2|PI-PLC phospholipase C, beta 4 protein-coding 13-PTNLD9-TUMOR_peak_31025 chr20 37973393 37973586 + 8.02622 NA Intergenic Tigger3b|DNA|TcMar-Tigger -120098 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LOC339568 - uncharacterized LOC339568 ncRNA 13-PTNLD9-TUMOR_peak_19388 chr16 55708621 55708844 + 8.02622 NA intron (NM_001043, intron 3 of 13) L1PA16|LINE|L1 3149 NM_001172502 6530 Hs.78036 NM_001043 HPRD:01232 SLC6A2 NAT1|NET|NET1|SLC6A5 solute carrier family 6 (neurotransmitter transporter), member 2 protein-coding 13-PTNLD9-TUMOR_peak_8501 chr10 123892178 123892318 + 8.02622 NA exon (NM_001291877, exon 6 of 20) exon (NM_001291877, exon 6 of 20) 19694 NM_001291879 10579 Hs.501252 NM_006997 HPRD:05600 TACC2 AZU-1|ECTACC transforming, acidic coiled-coil containing protein 2 protein-coding 13-PTNLD9-TUMOR_peak_55519 chrX 9834213 9834358 + 8.02622 NA intron (NM_001649, intron 1 of 9) intron (NM_001649, intron 1 of 9) 79789 NM_001649 357 Hs.567236 NM_001649 HPRD:02113 SHROOM2 APXL|HSAPXL shroom family member 2 protein-coding 13-PTNLD9-TUMOR_peak_17924 chr15 88295911 88296052 + 8.02622 NA Intergenic Intergenic 175821 NR_026869 145978 Hs.350808 NM_152454 HPRD:08101 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 13-PTNLD9-TUMOR_peak_19820 chr16 78598006 78598126 + 8.02622 NA intron (NM_001291997, intron 7 of 7) MLT1H|LTR|ERVL-MaLR 464756 NR_120435 51741 Hs.461453 NM_016373 HPRD:05501 WWOX D16S432E|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 13-PTNLD9-TUMOR_peak_33837 chr3 13438316 13438505 + 8.02622 NA intron (NM_024923, intron 3 of 39) intron (NM_024923, intron 3 of 39) 23409 NM_024923 23225 Hs.475525 NM_024923 HPRD:06368 NUP210 GP210|POM210 nucleoporin 210kDa protein-coding 13-PTNLD9-TUMOR_peak_53831 chr9 87569140 87569338 + 8.02622 NA intron (NM_001018064, intron 14 of 16) intron (NM_001018064, intron 14 of 16) 283947 NM_001018064 4915 Hs.494312 NM_006180 HPRD:02712 NTRK2 GP145-TrkB|TRKB|trk-B neurotrophic tyrosine kinase, receptor, type 2 protein-coding 13-PTNLD9-TUMOR_peak_30060 chr2 235044460 235044675 + 8.02622 NA Intergenic Intergenic 85221 NM_006944 6694 Hs.444488 NM_006944 HPRD:04029 SPP2 SPP-24|SPP24 secreted phosphoprotein 2, 24kDa protein-coding 13-PTNLD9-TUMOR_peak_53938 chr9 92164101 92164195 + 8.02622 NA Intergenic L1ME3B|LINE|L1 -55779 NM_006705 10912 Hs.9701 NM_006705 HPRD:05383 GADD45G CR6|DDIT2|GADD45gamma|GRP17 growth arrest and DNA-damage-inducible, gamma protein-coding 13-PTNLD9-TUMOR_peak_6777 chr10 28917186 28917293 + 8.02622 NA Intergenic Intergenic -49185 NM_012342 25805 Hs.533336 NM_012342 HPRD:05117 BAMBI NMA BMP and activin membrane-bound inhibitor protein-coding 13-PTNLD9-TUMOR_peak_13442 chr12 88207868 88208045 + 8.02622 NA Intergenic Intergenic -29468 NR_033410 400058 Hs.572212 NR_033410 MKRN9P MKRN5|MKRN9|MKRNP6|RNF65|ZNF127L3 makorin ring finger protein 9, pseudogene pseudo 13-PTNLD9-TUMOR_peak_15115 chr13 111024383 111024680 + 8.02622 NA intron (NM_001846, intron 4 of 47) intron (NM_001846, intron 4 of 47) 31226 NR_107040 102465872 NR_107040 MIR8073 hsa-mir-8073 microRNA 8073 ncRNA 13-PTNLD9-TUMOR_peak_15669 chr14 49194398 49194594 + 8.02622 NA Intergenic Intergenic 858638 NM_001032 6235 Hs.156367 NM_001032 HPRD:04698 RPS29 DBA13|S29 ribosomal protein S29 protein-coding 13-PTNLD9-TUMOR_peak_13784 chr12 109630268 109630378 + 8.02622 NA intron (NM_001093, intron 14 of 51) MER20|DNA|hAT-Charlie 53121 NM_001093 32 Hs.234898 NM_001093 HPRD:07044 ACACB ACC2|ACCB|HACC275 acetyl-CoA carboxylase beta protein-coding 13-PTNLD9-TUMOR_peak_5675 chr1 227669344 227669472 + 8.02622 NA Intergenic Intergenic -81812 NR_102302 339500 Hs.30323 NM_032755 ZNF678 - zinc finger protein 678 protein-coding 13-PTNLD9-TUMOR_peak_14715 chr13 46359248 46359402 + 8.02622 NA intron (NM_198849, intron 1 of 1) intron (NM_198849, intron 1 of 1) 66521 NM_198849 283514 Hs.368483 NM_198849 HPRD:14145 SIAH3 - siah E3 ubiquitin protein ligase family member 3 protein-coding 13-PTNLD9-TUMOR_peak_14698 chr13 45389978 45390119 + 8.02622 NA Intergenic Intergenic -6282 NR_038433 144817 Hs.585616 NR_038433 ENSG00000235097 LINC00330 NCRNA00330 long intergenic non-protein coding RNA 330 ncRNA 13-PTNLD9-TUMOR_peak_30423 chr20 11210527 11210793 + 8.02622 NA Intergenic MLT1H1|LTR|ERVL-MaLR 43371 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 13-PTNLD9-TUMOR_peak_24638 chr19 30325906 30326083 + 8.02622 NA Intergenic L1ME3C|LINE|L1 23093 NM_001238 898 Hs.244723 NM_001238 HPRD:00455 CCNE1 CCNE cyclin E1 protein-coding 13-PTNLD9-TUMOR_peak_50723 chr8 41852900 41853000 + 8.02622 NA intron (NM_001099413, intron 3 of 17) intron (NM_001099413, intron 3 of 17) 56555 NM_006766 7994 Hs.491577 NM_006766 HPRD:03244 KAT6A MOZ|MYST3|RUNXBP2|ZC2HC6A|ZNF220 K(lysine) acetyltransferase 6A protein-coding 13-PTNLD9-TUMOR_peak_40643 chr5 37888650 37888821 + 8.02622 NA Intergenic Intergenic 15208 NM_001278094 100861519 Hs.536820 NM_001278094 ENSG00000248587 GDNF-AS1 GDNFOS GDNF antisense RNA 1 (head to head) protein-coding 13-PTNLD9-TUMOR_peak_2922 chr1 114290083 114290226 + 8.02622 NA intron (NM_006608, intron 2 of 17) HAL1|LINE|L1 11623 NM_006608 10745 Hs.655824 NM_006608 HPRD:09227 PHTF1 PHTF putative homeodomain transcription factor 1 protein-coding 13-PTNLD9-TUMOR_peak_53989 chr9 94277411 94277791 + 8.02622 NA Intergenic Intergenic -90693 NM_001290000 4783 Hs.79334 NM_005384 HPRD:05619 NFIL3 E4BP4|IL3BP1|NF-IL3A|NFIL3A nuclear factor, interleukin 3 regulated protein-coding 13-PTNLD9-TUMOR_peak_39443 chr4 140793602 140793757 + 8.02622 NA intron (NM_018717, intron 3 of 5) intron (NM_018717, intron 3 of 5) 206757 NM_002413 4258 Hs.81874 NM_002413 HPRD:03436 MGST2 GST2|MGST-II microsomal glutathione S-transferase 2 protein-coding 13-PTNLD9-TUMOR_peak_40692 chr5 40552430 40552528 + 8.02622 NA Intergenic Intergenic -127553 NM_000958 5734 Hs.199248 NM_000958 HPRD:03350 PTGER4 EP4|EP4R prostaglandin E receptor 4 (subtype EP4) protein-coding 13-PTNLD9-TUMOR_peak_35035 chr3 77087697 77087836 + 8.02622 NA Intergenic Intergenic -1528 NM_001290039 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout, axon guidance receptor, homolog 2 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_7366 chr10 51984227 51984339 + 8.02622 NA intron (NM_001143974, intron 6 of 18) intron (NM_001143974, intron 6 of 18) 24087 NM_019893 56624 Hs.512645 NM_019893 ENSG00000188611 ASAH2 BCDase|HNAC1|LCDase|N-CDase|NCDase N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2 protein-coding 13-PTNLD9-TUMOR_peak_25995 chr2 7320882 7321029 + 8.02622 NA Intergenic Intergenic -102944 NR_110252 101929452 NR_110252 ENSG00000223884 LOC101929452 - uncharacterized LOC101929452 ncRNA 13-PTNLD9-TUMOR_peak_10948 chr11 94509676 94509840 + 8.02622 NA intron (NM_001301007, intron 1 of 11) intron (NM_001301007, intron 1 of 11) 8250 NM_130847 154810 Hs.503594 NM_130847 HPRD:12451 AMOTL1 JEAP angiomotin like 1 protein-coding 13-PTNLD9-TUMOR_peak_26241 chr2 19258937 19259063 + 8.02622 NA Intergenic Intergenic -289190 NR_039914 100616307 NR_039914 miRBase:MI0017398 MIR4757 - microRNA 4757 ncRNA 13-PTNLD9-TUMOR_peak_35226 chr3 104671471 104671666 + 8.02622 NA Intergenic Intergenic -413989 NM_001243283 214 Hs.591293 NM_001627 HPRD:03389 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 13-PTNLD9-TUMOR_peak_605 chr1 20737777 20737884 + 8.02622 NA intron (NR_033887, intron 1 of 11) intron (NR_033887, intron 1 of 11) 17457 NR_033887 339505 Hs.633269 NR_033887 LINC01141 - long intergenic non-protein coding RNA 1141 ncRNA 13-PTNLD9-TUMOR_peak_11150 chr11 108784116 108784210 + 8.02622 NA intron (NM_004398, intron 16 of 17) MER4A1_|LTR|ERV1 248411 NM_004398 1662 Hs.591931 NM_004398 HPRD:03138 DDX10 HRH-J8 DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 protein-coding 13-PTNLD9-TUMOR_peak_29772 chr2 216529654 216529760 + 8.02622 NA intron (NR_037195, intron 5 of 9) intron (NR_037195, intron 5 of 9) 178552 NR_037195 646324 Hs.655713 NR_037195 ENSG00000235770 LINC00607 - long intergenic non-protein coding RNA 607 ncRNA 13-PTNLD9-TUMOR_peak_24727 chr19 34919210 34919324 + 8.02622 NA promoter-TSS (NM_005499) promoter-TSS (NM_005499) -1 NM_005499 10054 Hs.631580 NM_005499 HPRD:11658 UBA2 ARX|SAE2 ubiquitin-like modifier activating enzyme 2 protein-coding 13-PTNLD9-TUMOR_peak_16343 chr14 77974687 77974782 + 8.02622 NA 3' UTR (NM_004863, exon 12 of 12) 3' UTR (NM_004863, exon 12 of 12) -9524 NM_182509 145501 Hs.29742 NM_182509 HPRD:18182 ISM2 TAIL1|THSD3 isthmin 2 protein-coding 13-PTNLD9-TUMOR_peak_31957 chr21 16855635 16855751 + 8.02622 NA Intergenic Intergenic -246651 NM_013396 29761 Hs.743994 NM_013396 HPRD:05296 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 13-PTNLD9-TUMOR_peak_20682 chr17 21415022 21415158 + 8.02622 NA Intergenic CpG 39851 NM_001113434 339263 Hs.514016 NM_001113434 ENSG00000212719 C17orf51 - chromosome 17 open reading frame 51 protein-coding 13-PTNLD9-TUMOR_peak_2603 chr1 98403539 98403769 + 8.02622 NA Intergenic Intergenic -17039 NM_000110 1806 Hs.335034 NM_000110 HPRD:02036 DPYD DHP|DHPDHASE|DPD dihydropyrimidine dehydrogenase protein-coding 13-PTNLD9-TUMOR_peak_14628 chr13 40828721 40828817 + 8.02622 NA Intergenic MER67B|LTR|ERV1 -34130 NR_033877 400123 Hs.577960 NR_033877 LINC00548 - long intergenic non-protein coding RNA 548 ncRNA 13-PTNLD9-TUMOR_peak_36142 chr3 139477811 139477931 + 8.02622 NA Intergenic Intergenic -80986 NM_178177 349565 Hs.208673 NM_178177 HPRD:16370 NMNAT3 PNAT-3|PNAT3 nicotinamide nucleotide adenylyltransferase 3 protein-coding 13-PTNLD9-TUMOR_peak_29298 chr2 186372626 186372755 + 8.02622 NA Intergenic Intergenic -230665 NM_173651 401024 Hs.98025 NM_173651 HPRD:13483 FSIP2 - fibrous sheath interacting protein 2 protein-coding 13-PTNLD9-TUMOR_peak_27876 chr2 102686743 102687076 + 8.02622 NA promoter-TSS (NM_001288706) promoter-TSS (NM_001288706) 73 NM_001288706 3554 Hs.701982 NM_000877 HPRD:00994 IL1R1 CD121A|D2S1473|IL-1R-alpha|IL1R|IL1RA|P80 interleukin 1 receptor, type I protein-coding 13-PTNLD9-TUMOR_peak_32338 chr21 40365610 40365742 + 8.02622 NA Intergenic Intergenic -15976 NR_109962 101928435 Hs.385528 NR_109962 ENSG00000232837 LOC101928435 - uncharacterized LOC101928435 ncRNA 13-PTNLD9-TUMOR_peak_41225 chr5 71684637 71684743 + 8.02622 NA Intergenic L2c|LINE|L2 68496 NM_001284404 79810 Hs.126906 NM_024754 HPRD:15193 PTCD2 - pentatricopeptide repeat domain 2 protein-coding 13-PTNLD9-TUMOR_peak_50417 chr8 27013177 27013330 + 8.02622 NA Intergenic Intergenic 102703 NM_001283053 81551 Hs.201058 NM_030795 HPRD:18120 STMN4 RB3 stathmin-like 4 protein-coding 13-PTNLD9-TUMOR_peak_24647 chr19 31210442 31210641 + 8.02622 NA Intergenic CpG 347213 NM_014717 9745 Hs.378901 NM_014717 HPRD:15825 ZNF536 - zinc finger protein 536 protein-coding 13-PTNLD9-TUMOR_peak_9165 chr11 14402928 14403034 + 8.02622 NA Intergenic CpG -16929 NM_001177314 22800 Hs.502004 NM_012250 HPRD:02518 RRAS2 TC21 related RAS viral (r-ras) oncogene homolog 2 protein-coding 13-PTNLD9-TUMOR_peak_22642 chr18 12599654 12599844 + 8.02622 NA intron (NM_020148, intron 2 of 15) L1MC4|LINE|L1 56982 NM_001128627 56907 Hs.515283 NM_020148 HPRD:11600 SPIRE1 Spir-1 spire-type actin nucleation factor 1 protein-coding 13-PTNLD9-TUMOR_peak_38014 chr4 13922724 13922832 + 8.02622 NA intron (NR_121681, intron 3 of 3) intron (NR_121681, intron 3 of 3) -190814 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 13-PTNLD9-TUMOR_peak_18113 chr15 101889300 101889414 + 8.02622 NA intron (NM_138323, intron 13 of 13) intron (NM_138323, intron 13 of 13) -39848 NR_045387 100507472 Hs.498494 NR_045387 LOC100507472 - uncharacterized LOC100507472 ncRNA 13-PTNLD9-TUMOR_peak_56353 chrX 111073894 111074055 + 8.02622 NA intron (NM_012471, intron 7 of 10) THE1D|LTR|ERVL-MaLR -45305 NM_001195576 100329135 Hs.247868 NM_001195576 TRPC5OS TRPC5-AS1 TRPC5 opposite strand protein-coding 13-PTNLD9-TUMOR_peak_14678 chr13 44379348 44379453 + 8.02622 NA Intergenic Intergenic -18284 NM_017993 55068 Hs.128258 NM_017993 HPRD:07644 ENOX1 CNOX|PIG38|bA64J21.1|cCNOX ecto-NOX disulfide-thiol exchanger 1 protein-coding 13-PTNLD9-TUMOR_peak_30181 chr2 241304000 241304114 + 8.02622 NA Intergenic Intergenic -71058 NM_002081 2817 Hs.328232 NM_002081 HPRD:02671 GPC1 glypican glypican 1 protein-coding 13-PTNLD9-TUMOR_peak_28042 chr2 111499195 111499378 + 8.02622 NA intron (NM_001142807, intron 1 of 17) intron (NM_001142807, intron 1 of 17) 9136 NM_001142807 55289 Hs.253320 NM_018308 HPRD:12418 ACOXL - acyl-CoA oxidase-like protein-coding 13-PTNLD9-TUMOR_peak_55619 chrX 20085923 20086068 + 8.02622 NA intron (NM_001168465, intron 1 of 16) intron (NM_001168465, intron 1 of 16) 48761 NM_001168467 256714 Hs.127951 NM_152780 HPRD:06525 MAP7D2 - MAP7 domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_34219 chr3 33341640 33341816 + 8.02622 NA intron (NM_012157, intron 2 of 14) intron (NM_012157, intron 2 of 14) 22791 NM_001171713 25827 Hs.475872 NM_012157 HPRD:05736 FBXL2 FBL2|FBL3 F-box and leucine-rich repeat protein 2 protein-coding 13-PTNLD9-TUMOR_peak_20503 chr17 13465540 13465647 + 8.02622 NA intron (NM_006042, intron 1 of 1) intron (NM_006042, intron 1 of 1) 39651 NM_006042 9955 Hs.462270 NM_006042 HPRD:04958 HS3ST3A1 30ST3A1|3OST3A1 heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1 protein-coding 13-PTNLD9-TUMOR_peak_50071 chr8 10708074 10708175 + 8.02622 NA Intergenic Intergenic 10588 NR_125432 101929229 Hs.129800 NR_125432 LOC101929229 - uncharacterized LOC101929229 ncRNA 13-PTNLD9-TUMOR_peak_27731 chr2 97249903 97250049 + 8.02622 NA Intergenic FRAM|SINE|Alu 47512 NM_212481 10865 Hs.920 NM_006673 HPRD:12481 ARID5A MRF-1|MRF1|RP11-363D14 AT rich interactive domain 5A (MRF1-like) protein-coding 13-PTNLD9-TUMOR_peak_11021 chr11 99823757 99823855 + 8.02622 NA intron (NM_014361, intron 7 of 24) intron (NM_014361, intron 7 of 24) 396930 NM_175566 53942 Hs.656783 NM_014361 HPRD:06241 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 13-PTNLD9-TUMOR_peak_31161 chr20 43690043 43690167 + 8.02622 NA intron (NM_006282, intron 10 of 10) Tigger7|DNA|TcMar-Tigger 39648 NM_002251 3787 Hs.117780 NM_002251 HPRD:04214 KCNS1 KV9.1 potassium voltage-gated channel, delayed-rectifier, subfamily S, member 1 protein-coding 13-PTNLD9-TUMOR_peak_6441 chr10 9285819 9286064 + 8.02622 NA intron (NR_120635, intron 4 of 4) intron (NR_120635, intron 4 of 4) -31635 NR_108039 100507163 Hs.649223 NR_108039 LINC00709 - long intergenic non-protein coding RNA 709 ncRNA 13-PTNLD9-TUMOR_peak_24960 chr19 40168666 40168844 + 8.02622 NA Intergenic ERVL-B4-int|LTR|ERVL -1259 NR_034156 400696 Hs.456377 NM_207646 HPRD:14221 LGALS17A - Charcot-Leyden crystal protein pseudogene pseudo 13-PTNLD9-TUMOR_peak_26926 chr2 53429304 53429508 + 8.02622 NA Intergenic Intergenic -565523 NM_001008708 494143 Hs.585944 NM_001008708 HPRD:17418 CHAC2 - ChaC, cation transport regulator homolog 2 (E. coli) protein-coding 13-PTNLD9-TUMOR_peak_34138 chr3 27594376 27594472 + 8.02622 NA Intergenic HERVH-int|LTR|ERV1 -68513 NM_001258379 9497 Hs.250072 NM_003615 HPRD:04521 SLC4A7 NBC2|NBC3|NBCN1|SBC2|SLC4A6 solute carrier family 4, sodium bicarbonate cotransporter, member 7 protein-coding 13-PTNLD9-TUMOR_peak_38931 chr4 99087700 99087806 + 8.02622 NA Intergenic L1M1|LINE|L1 -23362 NM_174952 285555 Hs.680226 NM_174952 HPRD:14650 STPG2 C4orf37 sperm-tail PG-rich repeat containing 2 protein-coding 13-PTNLD9-TUMOR_peak_45225 chr6 47051494 47051607 + 8.02622 NA Intergenic Intergenic -41468 NM_153840 266977 Hs.733762 NM_025048 HPRD:08661 GPR110 KPG_012|PGR19|hGPCR36 G protein-coupled receptor 110 protein-coding 13-PTNLD9-TUMOR_peak_45736 chr6 91107758 91107943 + 8.02622 NA Intergenic Intergenic 85389 NR_039671 100616109 NR_039671 miRBase:MI0016812 MIR4464 - microRNA 4464 ncRNA 13-PTNLD9-TUMOR_peak_17265 chr15 50076124 50076258 + 8.02622 NA Intergenic L1PA2|LINE|L1 162965 NM_020234 56986 Hs.127432 NM_020234 HPRD:17474 DTWD1 - DTW domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_26690 chr2 42648074 42648189 + 8.02622 NA Intergenic Intergenic -59775 NM_004718 9167 Hs.339639 NM_004718 HPRD:05774 COX7A2L COX7AR|COX7RP|EB1|SIG81 cytochrome c oxidase subunit VIIa polypeptide 2 like protein-coding 13-PTNLD9-TUMOR_peak_43933 chr6 16155156 16155290 + 8.02622 NA Intergenic Intergenic 13436 NR_039782 100616269 NR_039782 MIR4639 - microRNA 4639 ncRNA 13-PTNLD9-TUMOR_peak_17456 chr15 65425260 65425490 + 8.02622 NA exon (NM_005707, exon 1 of 5) exon (NM_005707, exon 1 of 5) 799 NM_005707 10081 Hs.458596 NM_005707 HPRD:09736 PDCD7 ES18|HES18 programmed cell death 7 protein-coding 13-PTNLD9-TUMOR_peak_26571 chr2 36665827 36666040 + 8.02622 NA intron (NM_016441, intron 2 of 16) intron (NM_016441, intron 2 of 16) 82563 NM_016441 51232 Hs.699247 NM_016441 HPRD:08392 CRIM1 CRIM-1|S52 cysteine rich transmembrane BMP regulator 1 (chordin-like) protein-coding 13-PTNLD9-TUMOR_peak_7840 chr10 80339912 80340009 + 8.02622 NA Intergenic Intergenic 312875 NR_073447 414243 Hs.55047 NR_073447 ENSG00000227136 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 13-PTNLD9-TUMOR_peak_56481 chrX 129402779 129402977 + 8.02622 NA promoter-TSS (NM_017666) promoter-TSS (NM_017666) 44 NM_017666 55609 Hs.308418 NM_017666 HPRD:06526 ZNF280C SUHW3|ZNF633 zinc finger protein 280C protein-coding 13-PTNLD9-TUMOR_peak_55823 chrX 48620333 48620521 + 8.02622 NA intron (NM_001080489, intron 1 of 3) intron (NM_001080489, intron 1 of 3) 273 NM_001080489 392465 Hs.437539 NM_001080489 ENSG00000171433 GLOD5 - glyoxalase domain containing 5 protein-coding 13-PTNLD9-TUMOR_peak_6805 chr10 30007849 30008177 + 8.02622 NA intron (NM_003174, intron 1 of 35) AluSx1|SINE|Alu 16717 NM_003174 6840 Hs.499209 NM_003174 HPRD:04992 SVIL - supervillin protein-coding 13-PTNLD9-TUMOR_peak_15795 chr14 54086817 54086933 + 8.02622 NA Intergenic Intergenic 328327 NR_049843 100847076 NR_049843 miRBase:MI0019135 MIR5580 - microRNA 5580 ncRNA 13-PTNLD9-TUMOR_peak_27496 chr2 87456370 87456559 + 8.02622 NA Intergenic Intergenic -152928 NR_026846 285074 Hs.424184 NM_001012626 HPRD:17345 LOC285074 - anaphase promoting complex subunit 1 pseudogene pseudo 13-PTNLD9-TUMOR_peak_33356 chr22 42418634 42418729 + 8.02622 NA intron (NM_152613, intron 5 of 5) intron (NM_152613, intron 5 of 5) 23952 NM_152613 164684 Hs.655541 NM_152613 HPRD:14512 WBP2NL PAWP WBP2 N-terminal like protein-coding 13-PTNLD9-TUMOR_peak_20272 chr17 2886290 2886402 + 8.02622 NA intron (NM_015085, intron 10 of 24) intron (NM_015085, intron 10 of 24) -17157 NR_110818 101927911 Hs.626373 NR_110818 ENSG00000262884 LOC101927911 - uncharacterized LOC101927911 ncRNA 13-PTNLD9-TUMOR_peak_35074 chr3 86078877 86079053 + 8.02622 NA intron (NM_001256502, intron 9 of 10) intron (NM_001256502, intron 9 of 10) -201765 NR_046752 100874037 Hs.570566 NR_046752 ENSG00000241648 CADM2-AS2 - CADM2 antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_19829 chr16 79095239 79095541 + 8.02622 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 539232 NM_005360 4094 Hs.134859 NM_005360 HPRD:01518 MAF CCA4|c-MAF v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog protein-coding 13-PTNLD9-TUMOR_peak_19511 chr16 64195358 64195551 + 8.02622 NA Intergenic Intergenic 960465 NM_001797 1009 Hs.116471 NM_001797 CDH11 CAD11|CDHOB|OB|OSF-4 cadherin 11, type 2, OB-cadherin (osteoblast) protein-coding 13-PTNLD9-TUMOR_peak_31299 chr20 46438536 46438680 + 8.02622 NA Intergenic LTR16A2|LTR|ERVL -23248 NM_198596 55959 Hs.162016 NM_018837 HPRD:18130 SULF2 HSULF-2 sulfatase 2 protein-coding 13-PTNLD9-TUMOR_peak_32387 chr21 42920810 42921000 + 8.02622 NA Intergenic Intergenic -40820 NM_005656 7113 Hs.439309 NM_005656 HPRD:03637 TMPRSS2 PP9284|PRSS10 transmembrane protease, serine 2 protein-coding 13-PTNLD9-TUMOR_peak_51358 chr8 98337157 98337283 + 8.02622 NA intron (NR_125390, intron 2 of 2) intron (NR_125390, intron 2 of 2) -47044 NM_033512 85453 Hs.173094 NM_033512 HPRD:15576 TSPYL5 - TSPY-like 5 protein-coding 13-PTNLD9-TUMOR_peak_26566 chr2 36616879 36616994 + 8.02622 NA intron (NM_016441, intron 1 of 16) intron (NM_016441, intron 1 of 16) 33566 NM_016441 51232 Hs.699247 NM_016441 HPRD:08392 CRIM1 CRIM-1|S52 cysteine rich transmembrane BMP regulator 1 (chordin-like) protein-coding 13-PTNLD9-TUMOR_peak_38787 chr4 85553396 85553521 + 8.02622 NA intron (NM_001263, intron 6 of 12) intron (NM_001263, intron 6 of 12) 49401 NM_001263 1040 Hs.654899 NM_001263 HPRD:11944 CDS1 CDS CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 1 protein-coding 13-PTNLD9-TUMOR_peak_44799 chr6 36063103 36063201 + 8.02622 NA intron (NM_001315, intron 8 of 11) intron (NM_001315, intron 8 of 11) -35109 NR_072996 5603 Hs.178695 NM_002754 HPRD:09113 MAPK13 MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta mitogen-activated protein kinase 13 protein-coding 13-PTNLD9-TUMOR_peak_38110 chr4 25175237 25175400 + 8.02622 NA intron (NR_037934, intron 1 of 1) intron (NR_037934, intron 1 of 1) 13024 NR_037934 285540 Hs.732278 NR_037934 SEPSECS-AS1 - SEPSECS antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_17395 chr15 61224832 61224988 + 8.02622 NA intron (NM_134261, intron 1 of 10) AmnSINE1|SINE|Deu 251142 NR_120318 100996876 Hs.511626 NR_120318 LOC100996876 - uncharacterized LOC100996876 ncRNA 13-PTNLD9-TUMOR_peak_7537 chr10 65917013 65917146 + 8.02622 NA Intergenic Intergenic 635956 NM_001001330 221035 Hs.499833 NM_001001330 HPRD:16582 REEP3 C10orf74 receptor accessory protein 3 protein-coding 13-PTNLD9-TUMOR_peak_52115 chr8 132597007 132597142 + 8.02622 NA Intergenic Intergenic -319282 NM_015137 23167 Hs.204564 NM_015137 HPRD:17179 EFR3A - EFR3 homolog A (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_30422 chr20 11185932 11186038 + 8.02622 NA Intergenic Intergenic 68046 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 13-PTNLD9-TUMOR_peak_40008 chr4 185926161 185926610 + 8.02622 NA Intergenic CpG -13610 NM_001300782 391723 Hs.531242 NM_001029887 ENSG00000187821 HELT HCM1228|HESL|Mgn|bHLHb44 helt bHLH transcription factor protein-coding 13-PTNLD9-TUMOR_peak_20627 chr17 19191898 19192111 + 8.02622 NA intron (NM_014964, intron 4 of 10) L2a|LINE|L2 17298 NR_046824 100874309 Hs.733657 NR_046824 EPN2-IT1 - EPN2 intronic transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_35091 chr3 89163838 89163985 + 8.02622 NA intron (NM_182644, intron 1 of 6) CpG 7237 NM_182644 2042 Hs.123642 NM_005233 HPRD:01555 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 13-PTNLD9-TUMOR_peak_2700 chr1 107560335 107560439 + 8.02622 NA Intergenic AluY|SINE|Alu -38880 NM_018137 55170 Hs.26006 NM_018137 HPRD:10505 PRMT6 HRMT1L6 protein arginine methyltransferase 6 protein-coding 13-PTNLD9-TUMOR_peak_10460 chr11 69669637 69669837 + 8.02622 NA Intergenic Tigger7|DNA|TcMar-Tigger -35545 NM_005247 2248 Hs.37092 NM_005247 FGF3 HBGF-3|INT2 fibroblast growth factor 3 protein-coding 13-PTNLD9-TUMOR_peak_44717 chr6 33866679 33866794 + 8.02622 NA promoter-TSS (NR_106982) promoter-TSS (NR_106982) -176 NR_106982 102466816 NR_106982 MIR7159 hsa-mir-7159 microRNA 7159 ncRNA 13-PTNLD9-TUMOR_peak_39834 chr4 169705976 169706131 + 8.02622 NA intron (NM_016081, intron 10 of 20) intron (NM_016081, intron 10 of 20) -47103 NM_001166110 23022 Hs.151220 NM_016081 HPRD:09731 PALLD CGI151|MYN|PNCA1|SIH002 palladin, cytoskeletal associated protein protein-coding 13-PTNLD9-TUMOR_peak_47409 chr7 46330724 46330945 + 8.02622 NA Intergenic Intergenic -369963 NM_001013398 3486 Hs.450230 NM_000598 HPRD:00899 IGFBP3 BP-53|IBP3 insulin-like growth factor binding protein 3 protein-coding 13-PTNLD9-TUMOR_peak_6911 chr10 34413832 34413936 + 8.02622 NA intron (NM_001184791, intron 19 of 20) intron (NM_001184791, intron 19 of 20) -352276 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 13-PTNLD9-TUMOR_peak_20972 chr17 37404781 37404929 + 8.02622 NA Intergenic Intergenic -22815 NM_198993 342667 Hs.145068 NM_198993 HPRD:18113 STAC2 24b2|24b2/STAC2 SH3 and cysteine rich domain 2 protein-coding 13-PTNLD9-TUMOR_peak_9393 chr11 29282621 29282778 + 8.02622 NA Intergenic L1PA16|LINE|L1 755878 NM_002233 3739 Hs.592002 NM_002233 HPRD:01444 KCNA4 HBK4|HK1|HPCN2|HUKII|KCNA4L|KCNA8|KV1.4|PCN2 potassium voltage-gated channel, shaker-related subfamily, member 4 protein-coding 13-PTNLD9-TUMOR_peak_27120 chr2 66165010 66165210 + 8.02622 NA Intergenic Intergenic 420350 NR_039938 100616464 NR_039938 miRBase:MI0017422 MIR4778 - microRNA 4778 ncRNA 13-PTNLD9-TUMOR_peak_20822 chr17 29891890 29892134 + 8.02622 NA Intergenic Intergenic 4997 NR_029710 406968 NR_029710 miRBase:MI0000487 MIR193A MIRN193|MIRN193A microRNA 193a ncRNA 13-PTNLD9-TUMOR_peak_8263 chr10 105484692 105484812 + 8.02622 NA intron (NM_014631, intron 4 of 13) intron (NM_014631, intron 4 of 13) -21785 NR_038940 100505839 Hs.655149 NR_038940 SH3PXD2A-AS1 - SH3PXD2A antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_46032 chr6 126501843 126501982 + 8.02622 NA Intergenic Intergenic -58150 NR_049880 100847016 NR_049880 miRBase:MI0019302 MIR5695 - microRNA 5695 ncRNA 13-PTNLD9-TUMOR_peak_44790 chr6 35744535 35744641 + 8.02622 NA intron (NR_104469, intron 1 of 1) intron (NR_104469, intron 1 of 1) 217 NR_104467 389383 Hs.259563 NM_207409 HPRD:15616 CLPSL2 AAAL3045|C6orf126|UNQ3045|dJ510O8.5 colipase-like 2 protein-coding 13-PTNLD9-TUMOR_peak_27198 chr2 70237552 70237659 + 8.02622 NA intron (NR_033872, intron 7 of 10) L2c|LINE|L2 -48208 NM_152792 151516 Hs.516253 NM_152792 HPRD:08683 ASPRV1 MUNO|SASP|SASPase|Taps aspartic peptidase, retroviral-like 1 protein-coding 13-PTNLD9-TUMOR_peak_14103 chr12 122158109 122158295 + 8.02622 NA intron (NM_001080825, intron 1 of 11) intron (NM_001080825, intron 1 of 11) 7544 NM_001080825 144404 Hs.644504 NM_001080825 ENSG00000188735 TMEM120B - transmembrane protein 120B protein-coding 13-PTNLD9-TUMOR_peak_11446 chr11 121542371 121542564 + 8.02622 NA Intergenic Intergenic 219555 NM_003105 6653 Hs.368592 NM_003105 HPRD:03595 SORL1 C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250 sortilin-related receptor, L(DLR class) A repeats containing protein-coding 13-PTNLD9-TUMOR_peak_38877 chr4 89978300 89978413 + 8.02622 NA promoter-TSS (NM_014883) promoter-TSS (NM_014883) -10 NM_014883 10144 Hs.97270 NM_014883 HPRD:10944 FAM13A ARHGAP48|FAM13A1 family with sequence similarity 13, member A protein-coding 13-PTNLD9-TUMOR_peak_2842 chr1 111765614 111765806 + 8.02622 NA Intergenic Intergenic -4571 NM_004000 1117 Hs.514840 NM_004000 HPRD:03315 CHI3L2 CHIL2|YKL-39|YKL39 chitinase 3-like 2 protein-coding 13-PTNLD9-TUMOR_peak_48870 chr7 117075673 117075881 + 8.02622 NA Intergenic Intergenic -8200 NM_130768 136991 Hs.352412 NM_130768 HPRD:10677 ASZ1 ALP1|ANKL1|C7orf7|CT1.19|GASZ|Orf3 ankyrin repeat, SAM and basic leucine zipper domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_44895 chr6 38477555 38477717 + 8.02622 NA intron (NM_001172418, intron 5 of 10) intron (NM_001172418, intron 5 of 10) 86207 NM_001172418 114781 Hs.603858 NM_052893 HPRD:12543 BTBD9 dJ322I12.1 BTB (POZ) domain containing 9 protein-coding 13-PTNLD9-TUMOR_peak_35137 chr3 96550159 96550272 + 8.02622 NA intron (NM_001080448, intron 1 of 17) intron (NM_001080448, intron 1 of 17) 16790 NM_001278301 285220 Hs.653244 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 13-PTNLD9-TUMOR_peak_53740 chr9 81940556 81940705 + 8.02622 NA Intergenic Intergenic -180049 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 13-PTNLD9-TUMOR_peak_1931 chr1 58912755 58912889 + 8.02622 NA Intergenic Intergenic 99624 NM_145243 115209 Hs.425769 NM_145243 HPRD:14879 OMA1 2010001O09Rik|DAB1|MPRP-1|YKR087C|ZMPOMA1|peptidase OMA1 zinc metallopeptidase protein-coding 13-PTNLD9-TUMOR_peak_50144 chr8 16574601 16574770 + 8.02622 NA Intergenic LTR19A|LTR|ERV1 284989 NM_019851 26281 Hs.199905 NM_019851 FGF20 FGF-20|RHDA2 fibroblast growth factor 20 protein-coding 13-PTNLD9-TUMOR_peak_17422 chr15 63664624 63664718 + 8.02622 NA intron (NM_206925, intron 2 of 9) intron (NM_206925, intron 2 of 9) 9638 NM_001218 771 Hs.210995 NM_001218 CA12 CAXII|HsT18816 carbonic anhydrase XII protein-coding 13-PTNLD9-TUMOR_peak_52433 chr8 144536902 144537005 + 8.02622 NA intron (NM_015117, intron 9 of 11) Tigger7|DNA|TcMar-Tigger -24351 NM_201589 389692 Hs.521914 NM_201589 HPRD:14346 MAFA RIPE3b1|hMafA v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog A protein-coding 13-PTNLD9-TUMOR_peak_32388 chr21 42955293 42955516 + 8.02622 NA Intergenic Intergenic -75319 NM_005656 7113 Hs.439309 NM_005656 HPRD:03637 TMPRSS2 PP9284|PRSS10 transmembrane protease, serine 2 protein-coding 13-PTNLD9-TUMOR_peak_8014 chr10 93368733 93368829 + 8.02622 NA intron (NR_024467, intron 1 of 4) intron (NR_024467, intron 1 of 4) 2436 NR_024467 100188947 Hs.535293 NR_024467 HECTD2-AS1 - HECTD2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_38479 chr4 58356859 58357026 + 8.02622 NA Intergenic Intergenic -380391 NM_001253835 3490 Hs.479808 NM_001553 HPRD:04183 IGFBP7 AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF insulin-like growth factor binding protein 7 protein-coding 13-PTNLD9-TUMOR_peak_8360 chr10 114760822 114760918 + 8.02622 NA intron (NM_001146274, intron 4 of 13) intron (NM_001146274, intron 4 of 13) 50861 NM_001146286 6934 Hs.593995 NM_030756 HPRD:03751 TCF7L2 TCF-4|TCF4 transcription factor 7-like 2 (T-cell specific, HMG-box) protein-coding 13-PTNLD9-TUMOR_peak_15790 chr14 53794565 53794719 + 8.02622 NA Intergenic Intergenic 174570 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 13-PTNLD9-TUMOR_peak_39841 chr4 170064658 170064866 + 8.02622 NA intron (NM_020870, intron 4 of 11) intron (NM_020870, intron 4 of 11) 127487 NM_020870 57630 Hs.301804 NM_020870 HPRD:15335 SH3RF1 POSH|RNF142|SH3MD2 SH3 domain containing ring finger 1 protein-coding 13-PTNLD9-TUMOR_peak_34164 chr3 30553092 30553348 + 8.02622 NA Intergenic Intergenic -94774 NM_001024847 7048 Hs.82028 NM_003242 HPRD:01823 TGFBR2 AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TGFR-2|TGFbeta-RII transforming growth factor, beta receptor II (70/80kDa) protein-coding 13-PTNLD9-TUMOR_peak_53935 chr9 92121105 92121247 + 8.02622 NA Intergenic Intergenic -26565 NM_001142287 10507 Hs.494406 NM_006378 HPRD:03520 SEMA4D C9orf164|CD100|M-sema-G|SEMAJ|coll-4 sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D protein-coding 13-PTNLD9-TUMOR_peak_19365 chr16 54100414 54100647 + 8.02622 NA intron (NM_001080432, intron 8 of 8) intron (NM_001080432, intron 8 of 8) 27225 NR_103838 100505692 NR_103838 FTO-IT1 - FTO intronic transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_34819 chr3 63203195 63203352 + 8.02622 NA Intergenic L1PA2|LINE|L1 -60641 NM_001130003 132204 Hs.648668 NM_144642 HPRD:15458 SYNPR SPO synaptoporin protein-coding 13-PTNLD9-TUMOR_peak_15406 chr14 25211180 25211300 + 8.02622 NA Intergenic Intergenic -107808 NM_004131 3002 Hs.1051 NM_004131 HPRD:00476 GZMB CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1) protein-coding 13-PTNLD9-TUMOR_peak_40644 chr5 37941385 37941716 + 8.02622 NA Intergenic Intergenic 68023 NM_001278094 100861519 Hs.536820 NM_001278094 ENSG00000248587 GDNF-AS1 GDNFOS GDNF antisense RNA 1 (head to head) protein-coding 13-PTNLD9-TUMOR_peak_45316 chr6 52907072 52907196 + 8.02622 NA intron (NM_014920, intron 1 of 13) intron (NM_014920, intron 1 of 13) 19466 NM_016513 22858 Hs.417022 NM_014920 HPRD:09996 ICK ECO|LCK2|MRK intestinal cell (MAK-like) kinase protein-coding 13-PTNLD9-TUMOR_peak_39148 chr4 118055678 118055842 + 8.02622 NA Intergenic MLT1J|LTR|ERVL-MaLR -49024 NM_152402 133022 Hs.570737 NM_152402 HPRD:11643 TRAM1L1 - translocation associated membrane protein 1-like 1 protein-coding 13-PTNLD9-TUMOR_peak_38083 chr4 22459927 22460043 + 8.02622 NA intron (NM_145290, intron 3 of 18) intron (NM_145290, intron 3 of 18) 57692 NM_145290 166647 Hs.99195 NM_145290 HPRD:11011 GPR125 PGR21|TEM5L G protein-coupled receptor 125 protein-coding 13-PTNLD9-TUMOR_peak_44860 chr6 37172334 37172430 + 8.02622 NA Intergenic AluSz|SINE|Alu 34460 NM_001243186 5292 Hs.81170 NM_002648 HPRD:01292 PIM1 PIM Pim-1 proto-oncogene, serine/threonine kinase protein-coding 13-PTNLD9-TUMOR_peak_25097 chr19 44576205 44576310 + 8.02622 NA promoter-TSS (NM_001037813) promoter-TSS (NM_001037813) -40 NM_001037813 342909 Hs.445395 NM_001037813 ZNF284 ZNF284L zinc finger protein 284 protein-coding 13-PTNLD9-TUMOR_peak_9316 chr11 22478700 22478845 + 8.02622 NA intron (NR_120583, intron 3 of 3) LTR8|LTR|ERV1 34793 NR_120583 102723378 Hs.374255 NR_120583 LINC01495 - long intergenic non-protein coding RNA 1495 ncRNA 13-PTNLD9-TUMOR_peak_15094 chr13 110299508 110299607 + 8.02622 NA Intergenic Intergenic -81064 NR_103846 101409253 Hs.578072 NR_103846 ENSG00000234854 LINC00676 - long intergenic non-protein coding RNA 676 ncRNA 13-PTNLD9-TUMOR_peak_26089 chr2 10411054 10411207 + 8.02622 NA Intergenic Intergenic -31900 NM_002149 3241 Hs.580427 NM_002149 HPRD:02564 HPCAL1 BDR1|HLP2|VILIP-3 hippocalcin-like 1 protein-coding 13-PTNLD9-TUMOR_peak_45213 chr6 46816720 46816831 + 8.02622 NA Intergenic Intergenic -54433 NR_110658 101926962 Hs.680113 NR_110658 LOC101926962 - uncharacterized LOC101926962 ncRNA 13-PTNLD9-TUMOR_peak_14682 chr13 44596388 44596584 + 8.02622 NA promoter-TSS (NR_026955) promoter-TSS (NR_026955) 15 NR_026955 121838 Hs.201441 NR_026955 LINC00284 NCRNA00284 long intergenic non-protein coding RNA 284 ncRNA 13-PTNLD9-TUMOR_peak_44880 chr6 37625438 37625557 + 8.02622 NA intron (NM_153487, intron 3 of 16) intron (NM_153487, intron 3 of 16) 40269 NM_153487 266727 Hs.437993 NM_153487 HPRD:14374 MDGA1 GPIM|MAMDC3 MAM domain containing glycosylphosphatidylinositol anchor 1 protein-coding 13-PTNLD9-TUMOR_peak_20965 chr17 37158684 37158785 + 8.02622 NA Intergenic L2c|LINE|L2 -27425 NR_033753 342666 Hs.129645 NM_198502 HPRD:13478 LRRC37A11P - leucine rich repeat containing 37, member A11, pseudogene pseudo 13-PTNLD9-TUMOR_peak_2569 chr1 95258170 95258275 + 8.02622 NA intron (NR_104131, intron 1 of 4) intron (NR_104131, intron 1 of 4) 27615 NR_104131 101928079 Hs.596857 NR_104131 LINC01057 - long intergenic non-protein coding RNA 1057 ncRNA 13-PTNLD9-TUMOR_peak_27980 chr2 109949044 109949151 + 8.02622 NA intron (NM_001099289, intron 1 of 9) intron (NM_001099289, intron 1 of 9) -19016 NR_036224 100423027 NR_036224 miRBase:MI0015870 MIR4266 - microRNA 4266 ncRNA 13-PTNLD9-TUMOR_peak_47695 chr7 62476079 62476220 + 8.02622 NA Intergenic Intergenic 288285 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 13-PTNLD9-TUMOR_peak_2152 chr1 68413951 68414062 + 8.02622 NA intron (NR_040077, intron 1 of 9) L2c|LINE|L2 102454 NM_004675 9077 Hs.194695 NM_004675 HPRD:05547 DIRAS3 ARHI|NOEY2 DIRAS family, GTP-binding RAS-like 3 protein-coding 13-PTNLD9-TUMOR_peak_6947 chr10 35842036 35842138 + 8.02622 NA exon (NM_001282854, exon 6 of 8) exon (NM_001282854, exon 6 of 8) -52251 NM_153368 219770 Hs.638922 NM_153368 HPRD:13103 GJD4 CX40.1 gap junction protein, delta 4, 40.1kDa protein-coding 13-PTNLD9-TUMOR_peak_20632 chr17 19250153 19250462 + 8.02622 NA intron (NM_001243475, intron 5 of 6) intron (NM_001243475, intron 5 of 6) -2420 NR_031591 100302256 NR_031591 MIR1180 MIRN1180|hsa-mir-1180 microRNA 1180 ncRNA 13-PTNLD9-TUMOR_peak_40613 chr5 36450803 36450925 + 8.02622 NA Intergenic Intergenic -148853 NM_145000 202151 Hs.729817 NM_145000 HPRD:08064 RANBP3L - RAN binding protein 3-like protein-coding 13-PTNLD9-TUMOR_peak_50045 chr8 8468997 8469178 + 8.02622 NA Intergenic Intergenic -90579 NM_194284 137075 Hs.183617 NM_194284 HPRD:13069 CLDN23 CLDNL|hCG1646163 claudin 23 protein-coding 13-PTNLD9-TUMOR_peak_56557 chrX 138202951 138203142 + 8.02622 NA intron (NM_001139501, intron 2 of 7) intron (NM_001139501, intron 2 of 7) 84139 NM_001139498 2258 Hs.6540 NM_004114 HPRD:02090 FGF13 FGF-13|FGF2|FHF-2|FHF2 fibroblast growth factor 13 protein-coding 13-PTNLD9-TUMOR_peak_6792 chr10 29675299 29675400 + 8.02622 NA Intergenic Intergenic -23114 NR_110923 102724316 Hs.499209 NR_003930 SVIL-AS1 - SVIL antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_31033 chr20 38502851 38502946 + 8.02622 NA Intergenic Intergenic -130205 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 - long intergenic non-protein coding RNA 1370 ncRNA 13-PTNLD9-TUMOR_peak_13404 chr12 80291486 80291750 + 8.02622 NA intron (NM_001244990, intron 2 of 24) intron (NM_001244990, intron 2 of 24) 16073 NM_001143886 4659 Hs.49582 NM_002480 HPRD:03606 PPP1R12A M130|MBS|MYPT1 protein phosphatase 1, regulatory subunit 12A protein-coding 13-PTNLD9-TUMOR_peak_21551 chr17 54397018 54397142 + 8.02622 NA intron (NM_153228, intron 2 of 16) intron (NM_153228, intron 2 of 16) 166244 NM_153228 162282 Hs.673040 NM_153228 HPRD:08238 ANKFN1 - ankyrin-repeat and fibronectin type III domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_50170 chr8 17708762 17709146 + 8.02622 NA Intergenic Intergenic 43959 NM_147203 2267 Hs.491143 NM_004467 HPRD:09312 FGL1 HFREP1|HP-041|LFIRE-1|LFIRE1 fibrinogen-like 1 protein-coding 13-PTNLD9-TUMOR_peak_45455 chr6 71021895 71022179 + 8.02622 NA Intergenic Intergenic -9251 NM_001851 1297 Hs.590892 NM_001851 HPRD:00367 COL9A1 DJ149L1.1.2|EDM6|MED|STL4 collagen, type IX, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_33925 chr3 15228232 15228715 + 8.02601 NA intron (NR_027927, intron 1 of 4) L1PA3|LINE|L1 18993 NR_027927 344875 Hs.722756 NR_027927 ENSG00000230524 COL6A4P1 COL6A4|COL6A4P|DIVA|DVWA|VWA6 collagen, type VI, alpha 4 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_39259 chr4 123844127 123844252 + 8.02601 NA promoter-TSS (NM_007083) promoter-TSS (NM_007083) -30 NM_198041 11162 Hs.558459 NM_007083 HPRD:05880 NUDT6 ASFGF2|FGF-AS|FGF2AS|GFG-1|GFG1 nudix (nucleoside diphosphate linked moiety X)-type motif 6 protein-coding 13-PTNLD9-TUMOR_peak_26403 chr2 27781521 27781749 + 8.02601 NA Intergenic SVA_E|Other|Other -17754 NM_032266 84226 Hs.131021 NM_032266 HPRD:09849 C2orf16 - chromosome 2 open reading frame 16 protein-coding 13-PTNLD9-TUMOR_peak_53362 chr9 45729136 45729272 + 8.02371 NA Intergenic SST1|Satellite|centr -387739 NR_103714 100289124 Hs.567050 NM_001024608 ENSG00000237198 FAM27E2 FAM27E1 family with sequence similarity 27, member E2 ncRNA 13-PTNLD9-TUMOR_peak_7706 chr10 73648446 73648853 + 8.02359 NA Intergenic CpG -37567 NM_001042466 5660 Hs.523004 NM_002778 HPRD:01460 PSAP GLBA|SAP1 prosaposin protein-coding 13-PTNLD9-TUMOR_peak_39847 chr4 170172752 170172926 + 8.02359 NA intron (NM_020870, intron 2 of 11) intron (NM_020870, intron 2 of 11) 19410 NM_020870 57630 Hs.301804 NM_020870 HPRD:15335 SH3RF1 POSH|RNF142|SH3MD2 SH3 domain containing ring finger 1 protein-coding 13-PTNLD9-TUMOR_peak_11026 chr11 100432920 100433048 + 8.02359 NA Intergenic Intergenic -125423 NM_152432 143872 Hs.741465 NM_152432 ENSG00000165895 ARHGAP42 GRAF3 Rho GTPase activating protein 42 protein-coding 13-PTNLD9-TUMOR_peak_17084 chr15 40675031 40675182 + 8.02359 NA exon (NM_001142762, exon 1 of 8) exon (NM_001142762, exon 1 of 8) 184 NM_001142761 90417 Hs.525796 NM_033286 HPRD:12669 KNSTRN C15orf23|SKAP|TRAF4AF1 kinetochore-localized astrin/SPAG5 binding protein protein-coding 13-PTNLD9-TUMOR_peak_29881 chr2 220507286 220507467 + 8.02359 NA TTS (NM_005070) TTS (NM_005070) 15084 NR_048551 6508 Hs.1176 NM_005070 HPRD:00109 SLC4A3 AE3|SLC2C solute carrier family 4 (anion exchanger), member 3 protein-coding 13-PTNLD9-TUMOR_peak_44235 chr6 26305124 26305358 + 8.02359 NA Intergenic MER5B|DNA|hAT-Charlie -19514 NM_003543 8365 Hs.591790 NM_003543 HPRD:11919 HIST1H4H H4/h|H4FH histone cluster 1, H4h protein-coding 13-PTNLD9-TUMOR_peak_25109 chr19 45070225 45070445 + 8.02359 NA Intergenic L1MC4a|LINE|L1 -10185 NR_027754 388550 Hs.446909 NR_027754 ENSG00000230666 CEACAM22P - carcinoembryonic antigen-related cell adhesion molecule 2, pseudogene pseudo 13-PTNLD9-TUMOR_peak_50077 chr8 11141937 11142343 + 8.02359 NA 5' UTR (NM_015458, exon 1 of 10) 5' UTR (NM_015458, exon 1 of 10) 140 NM_015458 66036 Hs.591395 NM_015458 HPRD:09377 MTMR9 C8orf9|LIP-STYX|MTMR8 myotubularin related protein 9 protein-coding 13-PTNLD9-TUMOR_peak_31160 chr20 43670413 43670523 + 8.02359 NA intron (NM_006282, intron 10 of 10) intron (NM_006282, intron 10 of 10) 59285 NM_002251 3787 Hs.117780 NM_002251 HPRD:04214 KCNS1 KV9.1 potassium voltage-gated channel, delayed-rectifier, subfamily S, member 1 protein-coding 13-PTNLD9-TUMOR_peak_22774 chr18 20871997 20872095 + 8.02359 NA Intergenic Intergenic 136257 NM_138375 91768 Hs.11108 NM_138375 HPRD:16461 CABLES1 CABL1|CABLES|HsT2563|IK3-1 Cdk5 and Abl enzyme substrate 1 protein-coding 13-PTNLD9-TUMOR_peak_7711 chr10 73769432 73769535 + 8.02359 NA 3' UTR (NM_004273, exon 3 of 3) 3' UTR (NM_004273, exon 3 of 3) 45363 NM_004273 9469 Hs.158304 NM_004273 HPRD:07052 CHST3 C6ST|C6ST1|HSD carbohydrate (chondroitin 6) sulfotransferase 3 protein-coding 13-PTNLD9-TUMOR_peak_7869 chr10 81629370 81629590 + 8.02359 NA Intergenic THE1B|LTR|ERVL-MaLR -35174 NR_033857 100288974 Hs.733579 NR_033857 ENSG00000242600 LOC100288974 - BMS1 homolog, ribosome assembly protein (yeast) pseudogene pseudo 13-PTNLD9-TUMOR_peak_54016 chr9 95690986 95691102 + 8.02359 NA Intergenic L1ME1|LINE|L1 -18557 NM_001083536 89846 Hs.411081 NM_033086 HPRD:10957 FGD3 ZFYVE5 FYVE, RhoGEF and PH domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_14132 chr12 122598257 122598447 + 8.02359 NA intron (NM_014938, intron 1 of 16) AluY|SINE|Alu -53914 NM_152759 254050 Hs.374856 NM_152759 HPRD:14601 LRRC43 - leucine rich repeat containing 43 protein-coding 13-PTNLD9-TUMOR_peak_8580 chr10 127730430 127730755 + 8.02359 NA 3' UTR (NM_021641, exon 19 of 19) 3' UTR (NM_021641, exon 19 of 19) -68750 NR_102707 101410540 Hs.557889 NR_102707 ENSG00000233409 FANK1-AS1 - FANK1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_8607 chr10 129946066 129946186 + 8.02359 NA Intergenic L1ME2|LINE|L1 -21658 NM_001145966 4288 Hs.80976 NM_002417 HPRD:08902 MKI67 KIA|MIB-|MIB-1|PPP1R105 marker of proliferation Ki-67 protein-coding 13-PTNLD9-TUMOR_peak_17256 chr15 49338608 49338882 + 8.02359 NA promoter-TSS (NM_014701) promoter-TSS (NM_014701) 15 NM_014701 9728 Hs.9997 NM_014701 HPRD:17181 SECISBP2L SBP2L|SLAN SECIS binding protein 2-like protein-coding 13-PTNLD9-TUMOR_peak_34204 chr3 32511489 32511647 + 8.02359 NA Intergenic Intergenic 32835 NM_017801 54918 Hs.380627 NM_017801 HPRD:06987 CMTM6 CKLFSF6|PRO2219 CKLF-like MARVEL transmembrane domain containing 6 protein-coding 13-PTNLD9-TUMOR_peak_48725 chr7 105230024 105230142 + 8.02359 NA Intergenic Intergenic -8107 NR_027068 100130771 Hs.719432 NR_027068 ENSG00000185055 EFCAB10 - EF-hand calcium binding domain 10 ncRNA 13-PTNLD9-TUMOR_peak_25084 chr19 44123354 44123865 + 8.02359 NA intron (NM_182498, intron 1 of 2) CpG 405 NM_182498 126299 Hs.99093 NM_182498 HPRD:14671 ZNF428 C19orf37|Zfp428 zinc finger protein 428 protein-coding 13-PTNLD9-TUMOR_peak_45185 chr6 45914786 45914914 + 8.02100 NA intron (NM_001114086, intron 3 of 5) intron (NM_001114086, intron 3 of 5) -9516 NR_045673 53405 Hs.485489 NM_016929 HPRD:06292 CLIC5 MST130|MSTP130 chloride intracellular channel 5 protein-coding 13-PTNLD9-TUMOR_peak_43296 chr5 179105590 179105706 + 8.02100 NA TTS (NM_001164444) TTS (NM_001164444) 2327 NM_001164444 646019 Hs.535767 NM_001164444 ENSG00000204659 CBY3 - chibby homolog 3 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_22632 chr18 12305046 12305161 + 8.02100 NA Intergenic Intergenic -3154 NM_032525 84617 Hs.193491 NM_032525 HPRD:11349 TUBB6 HsT1601|TUBB-5 tubulin, beta 6 class V protein-coding 13-PTNLD9-TUMOR_peak_30920 chr20 35203223 35203363 + 8.01777 NA intron (NM_001199535, intron 1 of 4) CpG 336 NM_001199515 60436 Hs.632264 NM_021809 HPRD:06293 TGIF2 - TGFB-induced factor homeobox 2 protein-coding 13-PTNLD9-TUMOR_peak_27700 chr2 96306422 96306542 + 8.01777 NA Intergenic Intergenic 48716 NM_138800 129868 Hs.232026 NM_138800 HPRD:15560 TRIM43 TRIM43A tripartite motif containing 43 protein-coding 13-PTNLD9-TUMOR_peak_52593 chr9 503954 504048 + 8.01433 NA promoter-TSS (NM_015158) promoter-TSS (NM_015158) -694 NM_001256877 23189 Hs.306764 NM_015158 HPRD:09651 KANK1 ANKRD15|CPSQ2|KANK KN motif and ankyrin repeat domains 1 protein-coding 13-PTNLD9-TUMOR_peak_20447 chr17 8339605 8339734 + 8.01433 NA intron (NM_001025579, intron 1 of 9) CpG 499 NM_030808 81565 Hs.372123 NM_030808 HPRD:06340 NDEL1 EOPA|MITAP1|NDE1L1|NDE2|NUDEL nudE neurodevelopment protein 1-like 1 protein-coding 13-PTNLD9-TUMOR_peak_21929 chr17 72376414 72376636 + 8.01433 NA Intergenic Intergenic 12880 NM_181790 350383 Hs.574368 NM_181790 HPRD:16424 GPR142 PGR2 G protein-coupled receptor 142 protein-coding 13-PTNLD9-TUMOR_peak_21449 chr17 48277168 48277343 + 8.01433 NA exon (NM_000088, exon 2 of 51) exon (NM_000088, exon 2 of 51) 1745 NM_000088 1277 Hs.172928 NM_000088 HPRD:00362 COL1A1 OI4 collagen, type I, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_1732 chr1 49472132 49472268 + 8.01433 NA intron (NM_032785, intron 5 of 13) L1PA3|LINE|L1 -229653 NM_024603 79656 Hs.475348 NM_024603 BEND5 C1orf165 BEN domain containing 5 protein-coding 13-PTNLD9-TUMOR_peak_50702 chr8 41349439 41349535 + 8.01433 NA intron (NM_001002296, intron 1 of 4) intron (NM_001002296, intron 1 of 4) 1314 NM_001002296 51125 Hs.654773 NM_016099 HPRD:13595 GOLGA7 GCP16|GOLGA3AP1|GOLGA7A|HSPC041 golgin A7 protein-coding 13-PTNLD9-TUMOR_peak_32393 chr21 43055138 43055248 + 8.01433 NA Intergenic MIR3|SINE|MIR -44269 NR_024367 54090 Hs.570442 NR_024367 LINC00111 C21orf21|NCRNA00111 long intergenic non-protein coding RNA 111 ncRNA 13-PTNLD9-TUMOR_peak_32484 chr21 44832263 44832432 + 8.01433 NA Intergenic Intergenic 14655 NM_173354 150094 Hs.282113 NM_173354 HPRD:09301 SIK1 MSK|SIK|SNF1LK salt-inducible kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_16009 chr14 64804624 64804752 + 8.01433 NA non-coding (NR_073496, exon 1 of 8) non-coding (NR_073496, exon 1 of 8) 580 NM_001291712 2100 Hs.660607 NM_001437 HPRD:03390 ESR2 ER-BETA|ESR-BETA|ESRB|ESTRB|Erb|NR3A2 estrogen receptor 2 (ER beta) protein-coding 13-PTNLD9-TUMOR_peak_5897 chr1 234614834 234614980 + 8.01385 NA promoter-TSS (NM_005646) promoter-TSS (NM_005646) -58 NM_005646 6894 Hs.498115 NM_005646 HPRD:05445 TARBP1 TRM3|TRP-185|TRP185 TAR (HIV-1) RNA binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_23073 chr18 44626662 44626827 + 8.01145 NA intron (NM_031303, intron 14 of 14) intron (NM_031303, intron 14 of 14) 50127 NM_032124 84064 Hs.465041 NM_032124 HPRD:13640 HDHD2 3110052N05Rik|HEL-S-301 haloacid dehalogenase-like hydrolase domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_14566 chr13 33792269 33792385 + 8.01145 NA intron (NM_001243476, intron 5 of 17) LTR32|LTR|ERVL -12140 NM_001243474 90627 Hs.156551 NM_052851 HPRD:11607 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR-related lipid transfer (START) domain containing 13 protein-coding 13-PTNLD9-TUMOR_peak_28081 chr2 112503633 112503727 + 8.01145 NA Intergenic Intergenic 138061 NM_022662 64682 Hs.436527 NM_022662 HPRD:09769 ANAPC1 APC1|MCPR|TSG24 anaphase promoting complex subunit 1 protein-coding 13-PTNLD9-TUMOR_peak_9294 chr11 20077752 20077949 + 8.01145 NA intron (NM_001111019, intron 9 of 27) intron (NM_001111019, intron 9 of 27) -7001 NR_046672 100874014 Hs.557916 NR_046672 NAV2-AS2 - NAV2 antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_6100 chr1 243712551 243712673 + 8.01145 NA intron (NM_181690, intron 10 of 13) L2|LINE|L2 203134 NR_039824 100616343 NR_039824 MIR4677 - microRNA 4677 ncRNA 13-PTNLD9-TUMOR_peak_6371 chr10 5665192 5665331 + 8.01145 NA Intergenic Intergenic 43297 NR_037164 79754 Hs.445899 NM_024701 HPRD:10667 ASB13 - ankyrin repeat and SOCS box containing 13 protein-coding 13-PTNLD9-TUMOR_peak_49933 chr8 638358 638555 + 8.01145 NA intron (NM_207332, intron 3 of 5) intron (NM_207332, intron 3 of 5) 42770 NM_207332 157697 Hs.655310 NM_207332 HPRD:14105 ERICH1 - glutamate-rich 1 protein-coding 13-PTNLD9-TUMOR_peak_35945 chr3 132051588 132051746 + 8.01145 NA intron (NM_001292037, intron 4 of 8) MIRb|SINE|MIR 15456 NM_001134194 55 Hs.433060 NM_001099 HPRD:01378 ACPP 5'-NT|ACP-3|ACP3 acid phosphatase, prostate protein-coding 13-PTNLD9-TUMOR_peak_40986 chr5 58839823 58840002 + 8.01145 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) 42412 NM_006203 5144 Hs.117545 NM_006203 HPRD:02530 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D, cAMP-specific protein-coding 13-PTNLD9-TUMOR_peak_9865 chr11 56972641 56972828 + 8.01145 NA Intergenic Intergenic 23513 NM_001005210 219527 Hs.199853 NM_001005210 HPRD:16990 LRRC55 - leucine rich repeat containing 55 protein-coding 13-PTNLD9-TUMOR_peak_32395 chr21 43074172 43074382 + 8.01145 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -25185 NR_024367 54090 Hs.570442 NR_024367 LINC00111 C21orf21|NCRNA00111 long intergenic non-protein coding RNA 111 ncRNA 13-PTNLD9-TUMOR_peak_20935 chr17 36425639 36425737 + 8.01145 NA Intergenic Intergenic -12432 NR_036750 440434 Hs.443837 NR_036750 ENSG00000174093 LOC440434 - aminopeptidase puromycin sensitive pseudogene pseudo 13-PTNLD9-TUMOR_peak_42759 chr5 155107952 155108091 + 8.01145 NA Intergenic CpG -645746 NM_172244 6444 Hs.387207 NM_000337 HPRD:03246 SGCD 35DAG|CMD1L|DAGD|SG-delta|SGCDP|SGD sarcoglycan, delta (35kDa dystrophin-associated glycoprotein) protein-coding 13-PTNLD9-TUMOR_peak_41388 chr5 78791304 78791486 + 8.01145 NA intron (NM_001277077, intron 1 of 5) intron (NM_001277077, intron 1 of 5) 18264 NM_001277077 9456 Hs.591761 NM_004272 HOMER1 HOMER|HOMER1A|HOMER1B|HOMER1C|SYN47|Ves-1 homer homolog 1 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_41541 chr5 94029141 94029303 + 8.01145 NA intron (NM_032290, intron 20 of 20) intron (NM_032290, intron 20 of 20) 74831 NM_032290 84250 Hs.657315 NM_032290 HPRD:08538 ANKRD32 BRCTD1|BRCTx ankyrin repeat domain 32 protein-coding 13-PTNLD9-TUMOR_peak_15019 chr13 101320675 101320852 + 8.01145 NA intron (NM_001079669, intron 2 of 17) intron (NM_001079669, intron 2 of 17) 6426 NM_001079669 84899 Hs.190983 NM_032813 HPRD:07864 TMTC4 - transmembrane and tetratricopeptide repeat containing 4 protein-coding 13-PTNLD9-TUMOR_peak_5650 chr1 226675781 226675901 + 8.01145 NA Intergenic Intergenic -60660 NM_001003665 375057 Hs.116827 NM_001003665 HPRD:16821 C1orf95 - chromosome 1 open reading frame 95 protein-coding 13-PTNLD9-TUMOR_peak_41963 chr5 127397945 127398173 + 8.01145 NA intron (NR_015360, intron 1 of 2) intron (NR_015360, intron 1 of 2) 20707 NR_015360 644873 Hs.340623 NR_015360 ENSG00000245937 LINC01184 - long intergenic non-protein coding RNA 1184 ncRNA 13-PTNLD9-TUMOR_peak_13792 chr12 110035616 110035758 + 8.01145 NA TTS (NM_000431) TTS (NM_000431) 24187 NM_001114185 4598 Hs.130607 NM_000431 HPRD:02015 MVK LRBP|MK|MVLK|POROK3 mevalonate kinase protein-coding 13-PTNLD9-TUMOR_peak_32437 chr21 44035200 44035338 + 8.01145 NA Intergenic Intergenic -38593 NM_001001571 5152 Hs.473927 NM_002606 HPRD:09115 PDE9A HSPDE9A2 phosphodiesterase 9A protein-coding 13-PTNLD9-TUMOR_peak_51912 chr8 126537697 126537801 + 8.01145 NA Intergenic HERV16-int|LTR|ERVL 93298 NM_001282985 10221 Hs.444947 NM_025195 HPRD:09863 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 13-PTNLD9-TUMOR_peak_33275 chr22 39198876 39199059 + 8.01145 NA Intergenic Intergenic -8806 NM_005740 10126 Hs.632766 NM_005740 HPRD:13239 DNAL4 PIG27 dynein, axonemal, light chain 4 protein-coding 13-PTNLD9-TUMOR_peak_42235 chr5 137945325 137945535 + 8.01145 NA Intergenic Intergenic -34112 NM_004134 3313 Hs.184233 NM_004134 HPRD:02770 HSPA9 CSA|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74 heat shock 70kDa protein 9 (mortalin) protein-coding 13-PTNLD9-TUMOR_peak_494 chr1 15671436 15671564 + 8.01145 NA intron (NM_052929, intron 15 of 30) intron (NM_052929, intron 15 of 30) -64891 NM_024329 79180 Hs.465374 NM_024329 HPRD:13266 EFHD2 SWS1 EF-hand domain family, member D2 protein-coding 13-PTNLD9-TUMOR_peak_26202 chr2 16657014 16657156 + 8.01145 NA Intergenic MSTB|LTR|ERVL-MaLR 190049 NM_030797 81553 Hs.467769 NM_030797 HPRD:07729 FAM49A - family with sequence similarity 49, member A protein-coding 13-PTNLD9-TUMOR_peak_11783 chr12 898670 898832 + 8.01145 NA intron (NM_001184985, intron 1 of 27) AluJr|SINE|Alu 36662 NM_018979 65125 Hs.744906 NM_014823 HPRD:05570 WNK1 HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65 WNK lysine deficient protein kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_8541 chr10 126083241 126083405 + 8.01145 NA Intergenic Intergenic 24222 NM_000274 4942 Hs.523332 NM_000274 HPRD:02021 OAT GACR|HOGA|OATASE|OKT ornithine aminotransferase protein-coding 13-PTNLD9-TUMOR_peak_40424 chr5 16690482 16690596 + 8.01145 NA intron (NM_012334, intron 27 of 40) intron (NM_012334, intron 27 of 40) -73372 NM_001034850 54463 Hs.481704 NM_019000 HPRD:07879 FAM134B JK-1|JK1 family with sequence similarity 134, member B protein-coding 13-PTNLD9-TUMOR_peak_26253 chr2 20019295 20019597 + 8.01145 NA Intergenic Intergenic -49169 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 13-PTNLD9-TUMOR_peak_21582 chr17 55666773 55666871 + 8.01145 NA intron (NM_138962, intron 7 of 13) intron (NM_138962, intron 7 of 13) 18951 NR_110807 101927539 Hs.680439 NR_110807 ENSG00000263499 LOC101927539 - uncharacterized LOC101927539 ncRNA 13-PTNLD9-TUMOR_peak_49528 chr7 144083958 144084173 + 8.00698 NA Intergenic Intergenic 23255 NM_001080413 135935 Hs.558628 NM_001080413 ENSG00000106410 NOBOX OG-2|OG2|OG2X|POF5|TCAG_12042 NOBOX oogenesis homeobox protein-coding 13-PTNLD9-TUMOR_peak_23401 chr18 61638600 61638776 + 8.00312 NA intron (NM_198833, intron 1 of 6) intron (NM_198833, intron 1 of 6) 1425 NM_198833 5271 Hs.368077 NM_002640 HPRD:03412 SERPINB8 CAP2|PI8 serpin peptidase inhibitor, clade B (ovalbumin), member 8 protein-coding 13-PTNLD9-TUMOR_peak_10832 chr11 86208999 86209126 + 7.99269 NA exon (NM_001161586, exon 6 of 15) exon (NM_001161586, exon 6 of 15) 123284 NM_021827 60494 Hs.144913 NM_021827 HPRD:08032 CCDC81 - coiled-coil domain containing 81 protein-coding 13-PTNLD9-TUMOR_peak_31053 chr20 39196951 39197074 + 7.99269 NA Intergenic Intergenic 120868 NM_005461 9935 Hs.169487 NM_005461 HPRD:07129 MAFB KRML|MCTO v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog B protein-coding 13-PTNLD9-TUMOR_peak_49803 chr7 155524187 155524328 + 7.99269 NA intron (NM_053043, intron 9 of 17) MER44B|DNA|TcMar-Tigger 80710 NM_000193 6469 Hs.164537 NM_000193 SHH HHG1|HLP3|HPE3|MCOPCB5|SMMCI|TPT|TPTPS sonic hedgehog protein-coding 13-PTNLD9-TUMOR_peak_2750 chr1 109757565 109757671 + 7.99269 NA non-coding (NR_034072, exon 2 of 2) non-coding (NR_034072, exon 2 of 2) 1103 NM_006513 6301 Hs.531176 NM_006513 HPRD:09605 SARS SERRS|SERS seryl-tRNA synthetase protein-coding 13-PTNLD9-TUMOR_peak_7355 chr10 51488978 51489248 + 7.99269 NA intron (NR_110767, intron 7 of 7) CpG -2786 NM_001077685 653268 Hs.528346 NM_001077685 ENSG00000204169 AGAP7P AGAP-7|AGAP7|CTGLF4|bA109G10.1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 7, pseudogene protein-coding 13-PTNLD9-TUMOR_peak_15322 chr14 23531350 23531489 + 7.99269 NA exon (NM_001164814, exon 16 of 19) exon (NM_001164814, exon 16 of 19) -4672 NM_022478 64403 Hs.155912 NM_022478 HPRD:13019 CDH24 CDH11L cadherin 24, type 2 protein-coding 13-PTNLD9-TUMOR_peak_12139 chr12 11729230 11729337 + 7.99269 NA Intergenic Intergenic 28319 NR_033890 338817 Hs.733066 NR_033890 ENSG00000247157 LINC01252 - long intergenic non-protein coding RNA 1252 ncRNA 13-PTNLD9-TUMOR_peak_32098 chr21 31518938 31519216 + 7.99269 NA Intergenic Intergenic 19894 NM_012131 26285 Hs.258589 NM_012131 HPRD:10833 CLDN17 - claudin 17 protein-coding 13-PTNLD9-TUMOR_peak_34423 chr3 45859707 45859952 + 7.99269 NA Intergenic Intergenic -21794 NM_020208 54716 Hs.413095 NM_020208 HPRD:16128 SLC6A20 SIT1|XT3|Xtrp3 solute carrier family 6 (proline IMINO transporter), member 20 protein-coding 13-PTNLD9-TUMOR_peak_383 chr1 10786481 10786809 + 7.99269 NA intron (NM_017766, intron 2 of 15) intron (NM_017766, intron 2 of 15) 70088 NM_001079843 54897 Hs.439894 NM_017766 HPRD:07897 CASZ1 CAS11|CST|SRG|ZNF693|dJ734G22.1 castor zinc finger 1 protein-coding 13-PTNLD9-TUMOR_peak_21481 chr17 48764062 48764285 + 7.99214 NA intron (NM_003786, intron 29 of 30) intron (NM_003786, intron 29 of 30) 21097 NM_052855 91369 Hs.463426 NM_052855 HPRD:17502 ANKRD40 - ankyrin repeat domain 40 protein-coding 13-PTNLD9-TUMOR_peak_19410 chr16 56648509 56648766 + 7.99214 NA Intergenic ERVL-B4-int|LTR|ERVL -2736 NR_001447 4500 Hs.647358 NR_001447 ENSG00000260549 MT1L MT1|MT1R|MTF metallothionein 1L (gene/pseudogene) pseudo 13-PTNLD9-TUMOR_peak_51991 chr8 128814915 128815144 + 7.99214 NA Intergenic Intergenic 6821 NR_031609 100302185 NR_031609 miRBase:MI0006337 MIR1204 hsa-mir-1204 microRNA 1204 ncRNA 13-PTNLD9-TUMOR_peak_30194 chr2 241833056 241833276 + 7.99214 NA intron (NM_001085437, intron 1 of 4) intron (NM_001085437, intron 1 of 4) -1711 NM_024861 79919 Hs.193745 NM_024861 HPRD:08003 C2orf54 - chromosome 2 open reading frame 54 protein-coding 13-PTNLD9-TUMOR_peak_505 chr1 16114648 16114965 + 7.99214 NA Intergenic AluSq2|SINE|Alu 19388 NM_001089591 440567 Hs.568229 NM_001089591 UQCRHL - ubiquinol-cytochrome c reductase hinge protein-like protein-coding 13-PTNLD9-TUMOR_peak_22832 chr18 24160439 24160578 + 7.99214 NA intron (NM_001258222, intron 1 of 4) intron (NM_001258222, intron 1 of 4) 10991 NR_107024 102466874 NR_107024 MIR8057 hsa-mir-8057 microRNA 8057 ncRNA 13-PTNLD9-TUMOR_peak_24705 chr19 34311400 34311605 + 7.98825 NA Intergenic CpG 23751 NM_024076 79047 Hs.221873 NM_024076 HPRD:13765 KCTD15 - potassium channel tetramerization domain containing 15 protein-coding 13-PTNLD9-TUMOR_peak_40180 chr5 1171580 1171706 + 7.98825 NA Intergenic LTR64|LTR|ERV1 7077 NR_109911 101928857 Hs.593732 NR_109911 ENSG00000249201 CTD-3080P12.3 - uncharacterized LOC101928857 ncRNA 13-PTNLD9-TUMOR_peak_1463 chr1 43825447 43825803 + 7.98464 NA intron (NM_001255, intron 4 of 10) intron (NM_001255, intron 4 of 10) 999 NM_001255 991 Hs.524947 NM_001255 HPRD:04686 CDC20 CDC20A|bA276H19.3|p55CDC cell division cycle 20 protein-coding 13-PTNLD9-TUMOR_peak_10235 chr11 65341781 65342033 + 7.98463 NA TTS (NM_152832) TTS (NM_152832) -1602 NM_001099409 254102 Hs.502867 NM_001099409 ENSG00000173442 EHBP1L1 - EH domain binding protein 1-like 1 protein-coding 13-PTNLD9-TUMOR_peak_31060 chr20 39318702 39318893 + 7.98463 NA promoter-TSS (NM_005461) promoter-TSS (NM_005461) -917 NM_005461 9935 Hs.169487 NM_005461 HPRD:07129 MAFB KRML|MCTO v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog B protein-coding 13-PTNLD9-TUMOR_peak_7260 chr10 47758072 47758309 + 7.98425 NA intron (NM_001098845, intron 9 of 11) MIRb|SINE|MIR 11340 NM_001098845 728113 Hs.705389 NM_001630 ENSG00000150165 ANXA8L1 ANXA8|ANXA8L2|VAC-beta|bA145E20.2 annexin A8-like 1 protein-coding 13-PTNLD9-TUMOR_peak_24631 chr19 30207587 30207682 + 7.98425 NA promoter-TSS (NM_001256047) promoter-TSS (NM_001256047) -938 NM_001256047 83636 Hs.529094 NM_031448 C19orf12 NBIA3|NBIA4|SPG43 chromosome 19 open reading frame 12 protein-coding 13-PTNLD9-TUMOR_peak_54568 chr9 118025340 118025469 + 7.98425 NA intron (NM_017418, intron 2 of 7) L2c|LINE|L2 121307 NM_017418 50514 Hs.148841 NM_017418 HPRD:16068 DEC1 CTS9 deleted in esophageal cancer 1 protein-coding 13-PTNLD9-TUMOR_peak_137 chr1 2458386 2458487 + 7.98425 NA promoter-TSS (NM_018216) promoter-TSS (NM_018216) -401 NM_018216 55229 Hs.26156 NM_018216 HPRD:07313 PANK4 - pantothenate kinase 4 protein-coding 13-PTNLD9-TUMOR_peak_20642 chr17 19549087 19549215 + 7.98425 NA Intergenic Intergenic -2913 NM_000382 224 Hs.499886 NM_000382 HPRD:07188 ALDH3A2 ALDH10|FALDH|SLS aldehyde dehydrogenase 3 family, member A2 protein-coding 13-PTNLD9-TUMOR_peak_524 chr1 16490890 16491115 + 7.98425 NA Intergenic MIR|SINE|MIR -8420 NM_004431 1969 Hs.171596 NM_004431 HPRD:01494 EPHA2 ARCC2|CTPA|CTPP1|CTRCT6|ECK EPH receptor A2 protein-coding 13-PTNLD9-TUMOR_peak_49147 chr7 131823751 131823898 + 7.98234 NA intron (NM_020911, intron 30 of 31) intron (NM_020911, intron 30 of 31) 228845 NR_110836 101928782 Hs.571369 NR_110836 ENSG00000224865 LOC101928782 - uncharacterized LOC101928782 ncRNA 13-PTNLD9-TUMOR_peak_54257 chr9 103869853 103869951 + 7.98234 NA intron (NM_207299, intron 1 of 7) L1PA2|LINE|L1 -77415 NM_017753 54886 Hs.382683 NM_017753 HPRD:17906 LPPR1 PRG-3 lipid phosphate phosphatase-related protein type 1 protein-coding 13-PTNLD9-TUMOR_peak_30909 chr20 35083287 35083406 + 7.98234 NA intron (NM_014902, intron 7 of 12) intron (NM_014902, intron 7 of 12) -6472 NM_001042486 22839 Hs.249600 NM_014902 HPRD:16826 DLGAP4 DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4 discs, large (Drosophila) homolog-associated protein 4 protein-coding 13-PTNLD9-TUMOR_peak_33542 chr3 1446033 1446170 + 7.98234 NA TTS (NM_014461) TTS (NM_014461) 311759 NM_001289081 27255 Hs.387300 NM_014461 HPRD:06242 CNTN6 NB3 contactin 6 protein-coding 13-PTNLD9-TUMOR_peak_39017 chr4 106816802 106817017 + 7.98234 NA intron (NM_001033047, intron 1 of 11) CpG 312 NM_001184690 255743 Hs.518921 NM_198278 HPRD:14141 NPNT EGFL6L|POEM nephronectin protein-coding 13-PTNLD9-TUMOR_peak_11701 chr11 131543988 131544210 + 7.98234 NA intron (NM_001048209, intron 1 of 7) intron (NM_001048209, intron 1 of 7) -133338 NR_110140 101929653 Hs.559159 NR_110140 ENSG00000237654 LOC101929653 - uncharacterized LOC101929653 ncRNA 13-PTNLD9-TUMOR_peak_46642 chr7 841606 841797 + 7.98234 NA Intergenic Intergenic -13493 NM_001171946 23353 Hs.438072 NM_025154 HPRD:16257 SUN1 UNC84A Sad1 and UNC84 domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_35988 chr3 133540758 133541011 + 7.98234 NA TTS (NM_021203) TTS (NM_021203) 38007 NM_021203 58477 Hs.12152 NM_021203 HPRD:18105 SRPRB APMCF1 signal recognition particle receptor, B subunit protein-coding 13-PTNLD9-TUMOR_peak_32444 chr21 44198232 44198413 + 7.98234 NA Intergenic Intergenic 101063 NM_001260477 10785 Hs.248815 NM_018669 HPRD:09330 WDR4 TRM82|TRMT82 WD repeat domain 4 protein-coding 13-PTNLD9-TUMOR_peak_56054 chrX 64926326 64926644 + 7.98234 NA intron (NM_002444, intron 1 of 12) intron (NM_002444, intron 1 of 12) 38974 NM_002444 4478 Hs.87752 NM_002444 HPRD:02399 MSN HEL70 moesin protein-coding 13-PTNLD9-TUMOR_peak_10822 chr11 85904695 85904808 + 7.98234 NA Intergenic Intergenic -51055 NM_152991 8726 Hs.503510 NM_003797 HPRD:09343 EED HEED|WAIT1 embryonic ectoderm development protein-coding 13-PTNLD9-TUMOR_peak_2031 chr1 62894172 62894318 + 7.98234 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -7730 NM_001017415 7398 Hs.35086 NM_003368 HPRD:04593 USP1 UBP ubiquitin specific peptidase 1 protein-coding 13-PTNLD9-TUMOR_peak_16970 chr15 33116981 33117188 + 7.98234 NA intron (NM_001277313, intron 17 of 20) L2b|LINE|L2 -106018 NR_109767 100131315 Hs.610545 NR_109767 LOC100131315 - uncharacterized LOC100131315 ncRNA 13-PTNLD9-TUMOR_peak_55810 chrX 47945663 47945818 + 7.98234 NA Intergenic Intergenic -14715 NM_001282201 57232 Hs.650883 NM_001037735 ENSG00000221994 ZNF630 dJ54B20.2 zinc finger protein 630 protein-coding 13-PTNLD9-TUMOR_peak_28194 chr2 118593670 118593790 + 7.98234 NA Intergenic CpG 21475 NM_006773 8886 Hs.744922 NM_006773 HPRD:05894 DDX18 MrDb DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 protein-coding 13-PTNLD9-TUMOR_peak_51125 chr8 70767376 70767473 + 7.98234 NA Intergenic MARNA|DNA|TcMar-Mariner -20125 NM_030958 81796 Hs.152460 NM_030958 HPRD:15399 SLCO5A1 OATP-J|OATP-RP4|OATP5A1|OATPRP4|SLC21A15 solute carrier organic anion transporter family, member 5A1 protein-coding 13-PTNLD9-TUMOR_peak_15132 chr13 113241696 113242043 + 7.98234 NA intron (NM_006322, intron 1 of 21) CpG 630 NM_006322 10426 Hs.224152 NM_006322 HPRD:10289 TUBGCP3 104p|GCP3|Grip104|SPBC98|Spc98|Spc98p tubulin, gamma complex associated protein 3 protein-coding 13-PTNLD9-TUMOR_peak_3047 chr1 118369207 118369319 + 7.98234 NA Intergenic Charlie17a|DNA|hAT-Charlie 103039 NM_017686 54834 Hs.310809 NM_017686 HPRD:06576 GDAP2 MACROD3 ganglioside induced differentiation associated protein 2 protein-coding 13-PTNLD9-TUMOR_peak_52843 chr9 19116591 19116718 + 7.98234 NA intron (NM_001122, intron 7 of 7) intron (NM_001122, intron 7 of 7) 10950 NR_038064 123 Hs.3416 NM_001122 HPRD:00057 PLIN2 ADFP|ADRP perilipin 2 protein-coding 13-PTNLD9-TUMOR_peak_28277 chr2 121347520 121347660 + 7.98234 NA Intergenic LTR40b|LTR|ERVL -123665 NR_027181 84931 Hs.334519 NM_032845 HPRD:08604 LINC01101 - long intergenic non-protein coding RNA 1101 ncRNA 13-PTNLD9-TUMOR_peak_37733 chr4 4992828 4992993 + 7.98234 NA Intergenic Intergenic 28287 NM_018659 54360 Hs.13872 NM_018659 HPRD:16260 CYTL1 C17|C4orf4 cytokine-like 1 protein-coding 13-PTNLD9-TUMOR_peak_10838 chr11 86278546 86278656 + 7.98234 NA intron (NM_001014811, intron 1 of 13) intron (NM_001014811, intron 1 of 13) 104639 NM_001014811 10873 Hs.199743 NM_006680 HPRD:06862 ME3 NADP-ME malic enzyme 3, NADP(+)-dependent, mitochondrial protein-coding 13-PTNLD9-TUMOR_peak_25319 chr19 49184557 49184652 + 7.98234 NA non-coding (NR_004401, exon 5 of 5) non-coding (NR_004401, exon 5 of 5) -8340 NM_145807 126147 Hs.326217 NM_145807 HPRD:14031 NTN5 - netrin 5 protein-coding 13-PTNLD9-TUMOR_peak_29149 chr2 175396366 175396494 + 7.98234 NA Intergenic MER34|LTR|ERV1 26370 NR_125730 103625684 NR_125730 RNU6-2 U6-2 RNA, U6 small nuclear 2 snRNA 13-PTNLD9-TUMOR_peak_36231 chr3 142305728 142305854 + 7.98234 NA Intergenic Intergenic -8123 NM_001184 545 Hs.271791 NM_001184 HPRD:08369 ATR FCTCS|FRP1|MEC1|SCKL|SCKL1 ATR serine/threonine kinase protein-coding 13-PTNLD9-TUMOR_peak_10257 chr11 65627785 65628038 + 7.97864 NA promoter-TSS (NM_025128) promoter-TSS (NM_025128) 39 NM_025128 80198 Hs.288798 NM_025128 HPRD:09419 MUS81 SLX3 MUS81 structure-specific endonuclease subunit protein-coding 13-PTNLD9-TUMOR_peak_52475 chr8 145008236 145008461 + 7.97014 NA intron (NM_201383, intron 11 of 31) intron (NM_201383, intron 11 of 31) 5410 NM_201384 5339 Hs.434248 NM_000445 HPRD:03180 PLEC EBS1|EBSO|HD1|LGMD2Q|PCN|PLEC1|PLEC1b|PLTN plectin protein-coding 13-PTNLD9-TUMOR_peak_3649 chr1 151915369 151915694 + 7.96890 NA Intergenic Intergenic -33170 NM_053055 117145 Hs.164070 NM_053055 THEM4 CTMP thioesterase superfamily member 4 protein-coding 13-PTNLD9-TUMOR_peak_23122 chr18 46067606 46067822 + 7.96520 NA intron (NM_001142397, intron 2 of 12) CpG-11781 2287 NM_001142397 9811 Hs.145230 NM_014772 HPRD:11083 CTIF Gm672|KIAA0427 CBP80/20-dependent translation initiation factor protein-coding 13-PTNLD9-TUMOR_peak_48690 chr7 103602617 103602800 + 7.96374 NA intron (NM_005045, intron 1 of 64) intron (NM_005045, intron 1 of 64) 27255 NM_005045 5649 Hs.655654 NM_005045 HPRD:02742 RELN LIS2|PRO1598|RL reelin protein-coding 13-PTNLD9-TUMOR_peak_31802 chr20 61964969 61965132 + 7.96374 NA Intergenic Intergenic -26290 NR_110634 100130587 Hs.640129 NR_110634 ENSG00000203900 LOC100130587 - uncharacterized LOC100130587 ncRNA 13-PTNLD9-TUMOR_peak_9556 chr11 36376315 36376502 + 7.96374 NA intron (NM_001160167, intron 1 of 8) intron (NM_001160167, intron 1 of 8) -21127 NM_024841 79899 Hs.19987 NM_024841 HPRD:07854 PRR5L PROTOR2 proline rich 5 like protein-coding 13-PTNLD9-TUMOR_peak_47488 chr7 51030736 51030907 + 7.96374 NA Intergenic Intergenic -169662 NM_001001555 2887 Hs.164060 NM_005311 HPRD:03312 GRB10 GRB-IR|Grb-10|IRBP|MEG1|RSS growth factor receptor-bound protein 10 protein-coding 13-PTNLD9-TUMOR_peak_27467 chr2 86245150 86245275 + 7.96374 NA Intergenic Intergenic 5779 NR_026984 90784 Hs.594051 NR_026984 LOC90784 - uncharacterized LOC90784 ncRNA 13-PTNLD9-TUMOR_peak_9949 chr11 59544065 59544232 + 7.96374 NA intron (NM_001178040, intron 2 of 9) intron (NM_001178040, intron 2 of 9) 21616 NM_004177 6809 Hs.180711 NM_004177 HPRD:15985 STX3 STX3A syntaxin 3 protein-coding 13-PTNLD9-TUMOR_peak_4412 chr1 172429477 172429571 + 7.96374 NA intron (NM_001300760, intron 2 of 4) intron (NM_001300760, intron 2 of 4) 7491 NM_001300760 92346 Hs.517991 NM_139240 HPRD:14291 C1orf105 - chromosome 1 open reading frame 105 protein-coding 13-PTNLD9-TUMOR_peak_50724 chr8 41862960 41863134 + 7.96374 NA intron (NM_001099413, intron 3 of 17) intron (NM_001099413, intron 3 of 17) 46458 NM_006766 7994 Hs.491577 NM_006766 HPRD:03244 KAT6A MOZ|MYST3|RUNXBP2|ZC2HC6A|ZNF220 K(lysine) acetyltransferase 6A protein-coding 13-PTNLD9-TUMOR_peak_34944 chr3 71762305 71762454 + 7.96374 NA intron (NM_173359, intron 2 of 7) MIRc|SINE|MIR 12147 NM_001134651 317649 Hs.581355 NM_173359 HPRD:10687 EIF4E3 eIF-4E3|eIF4E-3 eukaryotic translation initiation factor 4E family member 3 protein-coding 13-PTNLD9-TUMOR_peak_56473 chrX 129091325 129091493 + 7.96374 NA Intergenic CpG -47755 NM_021946 63035 Hs.496748 NM_021946 HPRD:06517 BCORL1 BCoR-L1|CXorf10 BCL6 corepressor-like 1 protein-coding 13-PTNLD9-TUMOR_peak_52125 chr8 132928920 132929059 + 7.96374 NA intron (NM_015137, intron 1 of 22) intron (NM_015137, intron 1 of 22) 12633 NM_015137 23167 Hs.204564 NM_015137 HPRD:17179 EFR3A - EFR3 homolog A (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_32668 chr22 18225309 18225415 + 7.96374 NA intron (NM_001244570, intron 1 of 3) intron (NM_001244570, intron 1 of 3) 21663 NR_036168 100423025 NR_036168 MIR3198-1 MIR3198 microRNA 3198-1 ncRNA 13-PTNLD9-TUMOR_peak_23759 chr19 5851418 5851527 + 7.96374 NA promoter-TSS (NM_001097639) promoter-TSS (NM_001097639) 13 NM_000149 2525 Hs.169238 NM_000149 HPRD:00196 FUT3 CD174|FT3B|FucT-III|LE|Les fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group) protein-coding 13-PTNLD9-TUMOR_peak_21245 chr17 44026545 44026681 + 7.96374 NA intron (NM_001123066, intron 1 of 14).2 CpG -50003 NM_001007532 246744 Hs.661831 NM_001007532 HPRD:06142 STH MAPTIT saitohin protein-coding 13-PTNLD9-TUMOR_peak_43280 chr5 178545461 178545567 + 7.96374 NA intron (NM_014244, intron 21 of 21) MER113|DNA|hAT-Charlie 57907 NM_014594 30832 Hs.272328 NM_014594 HPRD:15785 ZNF354C KID3 zinc finger protein 354C protein-coding 13-PTNLD9-TUMOR_peak_16549 chr14 99372928 99373042 + 7.96374 NA Intergenic Intergenic 195035 NM_182560 283598 Hs.448754 NM_182560 HPRD:08075 C14orf177 - chromosome 14 open reading frame 177 protein-coding 13-PTNLD9-TUMOR_peak_46932 chr7 16779987 16780167 + 7.96374 NA Intergenic Intergenic -13274 NM_014399 27075 Hs.364544 NM_014399 HPRD:15510 TSPAN13 NET-6|NET6|TM4SF13 tetraspanin 13 protein-coding 13-PTNLD9-TUMOR_peak_37276 chr3 193523371 193523533 + 7.96374 NA Intergenic MER5A|DNA|hAT-Charlie -178331 NR_046634 100873941 Hs.679364 NR_046634 ENSG00000224855 OPA1-AS1 - OPA1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_28908 chr2 161979860 161980000 + 7.96374 NA Intergenic Intergenic -13536 NM_133484 10010 Hs.132257 NM_004180 HPRD:04870 TANK I-TRAF|ITRAF|TRAF2 TRAF family member-associated NFKB activator protein-coding 13-PTNLD9-TUMOR_peak_5305 chr1 207200663 207200908 + 7.96374 NA intron (NM_001083924, intron 1 of 2) (CAGGG)n|Simple_repeat|Simple_repeat 5316 NM_023938 79098 Hs.32417 NM_023938 HPRD:15294 C1orf116 SARG chromosome 1 open reading frame 116 protein-coding 13-PTNLD9-TUMOR_peak_39357 chr4 132922845 132922988 + 7.96374 NA Intergenic L1MA8|LINE|L1 -1147554 NM_032961 57575 Hs.192859 NM_020815 PCDH10 OL-PCDH|PCDH19 protocadherin 10 protein-coding 13-PTNLD9-TUMOR_peak_18099 chr15 101389876 101390037 + 7.96374 NA Intergenic CpG -29941 NM_000693 220 Hs.459538 NM_000693 HPRD:02713 ALDH1A3 ALDH1A6|ALDH6|MCOP8|RALDH3 aldehyde dehydrogenase 1 family, member A3 protein-coding 13-PTNLD9-TUMOR_peak_44260 chr6 26550753 26550865 + 7.96276 NA Intergenic CpG 12237 NM_006353 10473 Hs.236774 NM_006353 HMGN4 HMG17L3|NHC high mobility group nucleosomal binding domain 4 protein-coding 13-PTNLD9-TUMOR_peak_53466 chr9 67750938 67751091 + 7.96276 NA Intergenic Intergenic -28109 NR_121606 102723709 Hs.743015 NR_121606 LOC102723709 - uncharacterized LOC102723709 ncRNA 13-PTNLD9-TUMOR_peak_13658 chr12 105065625 105065837 + 7.96276 NA intron (NM_018413, intron 2 of 2) intron (NM_018413, intron 2 of 2) 80320 NR_037487 100500843 NR_037487 MIR3922 - microRNA 3922 ncRNA 13-PTNLD9-TUMOR_peak_43530 chr6 3393295 3393489 + 7.96274 NA intron (NR_104448, intron 3 of 11) L2a|LINE|L2 51855 NR_104448 63027 Hs.713588 NM_015482 HPRD:12904 SLC22A23 C6orf85 solute carrier family 22, member 23 protein-coding 13-PTNLD9-TUMOR_peak_856 chr1 28576024 28576200 + 7.96274 NA Intergenic Intergenic -9851 NM_031459 83667 Hs.469543 NM_031459 HPRD:06378 SESN2 HI95|SES2|SEST2 sestrin 2 protein-coding 13-PTNLD9-TUMOR_peak_39577 chr4 148499339 148499433 + 7.96002 NA Intergenic MLT1N2|LTR|ERVL-MaLR -39153 NM_018241 55751 Hs.203896 NM_018241 TMEM184C TMEM34 transmembrane protein 184C protein-coding 13-PTNLD9-TUMOR_peak_15960 chr14 61946482 61946690 + 7.96002 NA intron (NM_006255, intron 9 of 13) intron (NM_006255, intron 9 of 13) 90326 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LOC101927780 - uncharacterized LOC101927780 ncRNA 13-PTNLD9-TUMOR_peak_4714 chr1 183577577 183577681 + 7.96002 NA Intergenic MER44B|DNA|TcMar-Tigger -17573 NM_001127651 4688 Hs.587558 NM_000433 HPRD:01991 NCF2 NCF-2|NOXA2|P67-PHOX|P67PHOX neutrophil cytosolic factor 2 protein-coding 13-PTNLD9-TUMOR_peak_13349 chr12 72447478 72447609 + 7.96002 NA Intergenic Intergenic 114917 NM_173353 121278 Hs.736576 NM_173353 HPRD:09594 TPH2 ADHD7|NTPH tryptophan hydroxylase 2 protein-coding 13-PTNLD9-TUMOR_peak_50114 chr8 12516976 12517085 + 7.96002 NA non-coding (NR_047662, exon 2 of 9) non-coding (NR_047662, exon 2 of 9) 6090 NR_047662 729732 Hs.322761 NR_047662 LOC729732 - uncharacterized LOC729732 ncRNA 13-PTNLD9-TUMOR_peak_10937 chr11 94062147 94062367 + 7.96002 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR 23454 NM_001199206 390243 Hs.553758 NM_001080486 ENSG00000183560 FOLR4 Folbp3|JUNO folate receptor 4, delta (putative) protein-coding 13-PTNLD9-TUMOR_peak_9089 chr11 12181326 12181434 + 7.95551 NA intron (NM_001282665, intron 1 of 21) intron (NM_001282665, intron 1 of 21) -2246 NM_001282666 9645 Hs.501928 NM_014632 HPRD:10085 MICAL2 MICAL-2|MICAL2PV1|MICAL2PV2 microtubule associated monooxygenase, calponin and LIM domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_55594 chrX 17755244 17755572 + 7.95551 NA promoter-TSS (NM_006746) promoter-TSS (NM_006746) -161 NM_006746 6322 Hs.109655 NM_006746 HPRD:02205 SCML1 - sex comb on midleg-like 1 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_55036 chr9 139452332 139452446 + 7.95551 NA Intergenic AluSx1|SINE|Alu 10095 NR_121577 101928483 Hs.170035 NR_121577 MIR4674HG - MIR4674 host gene (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_29331 chr2 190258227 190258384 + 7.95551 NA Intergenic Intergenic -47854 NM_032168 84128 Hs.399984 NM_032168 HPRD:07775 WDR75 NET16|UTP17 WD repeat domain 75 protein-coding 13-PTNLD9-TUMOR_peak_2189 chr1 71552020 71552297 + 7.95551 NA intron (NR_046217, intron 1 of 3) FordPrefect|DNA|hAT-Tip100 5151 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_28362 chr2 127852248 127852610 + 7.95551 NA intron (NM_139343, intron 1 of 18) intron (NM_139343, intron 1 of 18) 12474 NM_139343 274 Hs.193163 NM_004305 HPRD:03150 BIN1 AMPH2|AMPHL|SH3P9 bridging integrator 1 protein-coding 13-PTNLD9-TUMOR_peak_14359 chr12 133338752 133338909 + 7.95551 NA promoter-TSS (NM_015114) promoter-TSS (NM_015114) -356 NM_015114 23141 Hs.654628 NM_015114 ENSG00000176915 ANKLE2 KIAA0692|LEMD7|Lem4 ankyrin repeat and LEM domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_18449 chr16 9196381 9196528 + 7.95551 NA intron (NM_014117, intron 2 of 3) intron (NM_014117, intron 2 of 3) 10917 NM_014117 29035 Hs.221497 NM_014117 C16orf72 PRO0149 chromosome 16 open reading frame 72 protein-coding 13-PTNLD9-TUMOR_peak_41101 chr5 66727135 66727348 + 7.95551 NA Intergenic MIR|SINE|MIR -234624 NM_005582 4064 Hs.87205 NM_005582 HPRD:03749 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 13-PTNLD9-TUMOR_peak_36880 chr3 179485828 179486039 + 7.95551 NA intron (NM_003940, intron 19 of 20) intron (NM_003940, intron 19 of 20) 115000 NM_003940 8975 Hs.175322 NM_003940 HPRD:04666 USP13 ISOT3|IsoT-3 ubiquitin specific peptidase 13 (isopeptidase T-3) protein-coding 13-PTNLD9-TUMOR_peak_29082 chr2 172960139 172960301 + 7.95551 NA Intergenic CpG 7258 NM_004405 1746 Hs.419 NM_004405 HPRD:00527 DLX2 TES-1|TES1 distal-less homeobox 2 protein-coding 13-PTNLD9-TUMOR_peak_52297 chr8 140992588 140992955 + 7.95551 NA intron (NM_031466, intron 19 of 22) intron (NM_031466, intron 19 of 22) -277472 NM_001282534 51305 Hs.493037 NM_001282534 HPRD:16167 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium channel, subfamily K, member 9 protein-coding 13-PTNLD9-TUMOR_peak_30886 chr20 34287090 34287415 + 7.95452 NA promoter-TSS (NM_080748) promoter-TSS (NM_080748) 20 NM_080748 140823 Hs.472564 NM_080748 HPRD:12774 ROMO1 C20orf52|MTGM|MTGMP|bA353C18.2 reactive oxygen species modulator 1 protein-coding 13-PTNLD9-TUMOR_peak_49344 chr7 139184850 139184964 + 7.95452 NA Intergenic Intergenic -16450 NM_198508 346689 Hs.17572 NM_198508 KLRG2 CLEC15B killer cell lectin-like receptor subfamily G, member 2 protein-coding 13-PTNLD9-TUMOR_peak_1331 chr1 41343443 41343549 + 7.95452 NA Intergenic Intergenic -15478 NM_133467 163732 Hs.355820 NM_133467 HPRD:06011 CITED4 - Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4 protein-coding 13-PTNLD9-TUMOR_peak_52590 chr9 439612 439823 + 7.95452 NA intron (NM_001193536, intron 39 of 46) MIR|SINE|MIR -30577 NM_001256876 23189 Hs.306764 NM_015158 HPRD:09651 KANK1 ANKRD15|CPSQ2|KANK KN motif and ankyrin repeat domains 1 protein-coding 13-PTNLD9-TUMOR_peak_37899 chr4 8540572 8540713 + 7.94690 NA Intergenic MIR3|SINE|MIR -41322 NR_045511 27201 Hs.740355 NM_080819 GPR78 - G protein-coupled receptor 78 protein-coding 13-PTNLD9-TUMOR_peak_21308 chr17 45580298 45580480 + 7.94690 NA Intergenic MIR3|SINE|MIR -10403 NR_033934 653479 Hs.537279 NR_033934 MRPL45P2 - mitochondrial ribosomal protein L45 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_10583 chr11 73018469 73018687 + 7.94092 NA Intergenic CpG -1085 NM_014786 9828 Hs.533719 NM_014786 HPRD:10658 ARHGEF17 P164RHOGEF|TEM4|p164-RhoGEF Rho guanine nucleotide exchange factor (GEF) 17 protein-coding 13-PTNLD9-TUMOR_peak_2836 chr1 111588019 111588253 + 7.94080 NA Intergenic Intergenic -81570 NM_001006945 55791 Hs.25245 NM_018372 HPRD:17975 LRIF1 C1orf103|RIF1 ligand dependent nuclear receptor interacting factor 1 protein-coding 13-PTNLD9-TUMOR_peak_40653 chr5 38556971 38557081 + 7.94080 NA promoter-TSS (NM_001127671) promoter-TSS (NM_001127671) 138 NR_103554 100506495 Hs.657602 NR_103553 ENSG00000244968 LIFR-AS1 - LIFR antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_39675 chr4 154006460 154006646 + 7.94080 NA Intergenic Intergenic -67717 NM_001130067 23321 Hs.435711 NM_015271 HPRD:10279 TRIM2 CMT2R|RNF86 tripartite motif containing 2 protein-coding 13-PTNLD9-TUMOR_peak_5245 chr1 206212949 206213063 + 7.94080 NA Intergenic Intergenic -11277 NM_000707 553 Hs.1372 NM_000707 AVPR1B AVPR3 arginine vasopressin receptor 1B protein-coding 13-PTNLD9-TUMOR_peak_2298 chr1 84719710 84719912 + 7.94080 NA Intergenic Intergenic -44238 NM_001010971 148418 Hs.591445 NM_001010971 HPRD:17302 SAMD13 - sterile alpha motif domain containing 13 protein-coding 13-PTNLD9-TUMOR_peak_33172 chr22 35746857 35747030 + 7.94080 NA Intergenic Intergenic -14151 NR_106717 102464824 NR_106717 MIR6069 hsa-mir-6069 microRNA 6069 ncRNA 13-PTNLD9-TUMOR_peak_5506 chr1 223329762 223329913 + 7.94080 NA Intergenic Intergenic -13213 NM_003268 7100 Hs.604542 NM_003268 HPRD:04326 TLR5 MELIOS|SLE1|SLEB1|TIL3 toll-like receptor 5 protein-coding 13-PTNLD9-TUMOR_peak_32250 chr21 37400882 37401042 + 7.94080 NA Intergenic Intergenic 23344 NR_110419 100996609 Hs.742062 NR_110419 LINC01436 - long intergenic non-protein coding RNA 1436 ncRNA 13-PTNLD9-TUMOR_peak_34791 chr3 59222904 59223112 + 7.94080 NA Intergenic L3|LINE|CR1 -187293 NM_198463 200844 Hs.368434 NM_198463 HPRD:13458 C3orf67 - chromosome 3 open reading frame 67 protein-coding 13-PTNLD9-TUMOR_peak_29961 chr2 228653336 228653513 + 7.94080 NA Intergenic Intergenic -25134 NM_004591 6364 Hs.75498 NM_004591 HPRD:03571 CCL20 CKb4|LARC|MIP-3-alpha|MIP-3a|MIP3A|SCYA20|ST38 chemokine (C-C motif) ligand 20 protein-coding 13-PTNLD9-TUMOR_peak_38593 chr4 75480440 75480817 + 7.94080 NA promoter-TSS (NM_001657).2 promoter-TSS (NM_001657).2 37 NM_001657 374 Hs.270833 NM_001657 HPRD:00093 AREG AR|AREGB|CRDGF|SDGF amphiregulin protein-coding 13-PTNLD9-TUMOR_peak_1075 chr1 35331683 35331947 + 7.94080 NA exon (NM_001080418, exon 10 of 10) exon (NM_001080418, exon 10 of 10) -6398 NM_138428 113444 Hs.27160 NM_138428 SMIM12 C1orf212 small integral membrane protein 12 protein-coding 13-PTNLD9-TUMOR_peak_14502 chr13 30040145 30040385 + 7.94080 NA intron (NM_001033602, intron 7 of 13) intron (NM_001033602, intron 7 of 13) 21622 NR_046378 100874107 Hs.577987 NR_046378 MTUS2-AS1 - MTUS2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_15885 chr14 58397024 58397222 + 7.94080 NA Intergenic Intergenic -64531 NM_001206920 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35, member F4 protein-coding 13-PTNLD9-TUMOR_peak_52243 chr8 137416840 137416949 + 7.94080 NA Intergenic AluJr|SINE|Alu 947178 NM_006558 10656 Hs.444558 NM_006558 HPRD:10007 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH domain containing, RNA binding, signal transduction associated 3 protein-coding 13-PTNLD9-TUMOR_peak_2910 chr1 113749792 113749901 + 7.94080 NA promoter-TSS (NR_038846) promoter-TSS (NR_038846) -971 NR_038846 643441 Hs.124895 NR_038846 LOC643441 - uncharacterized LOC643441 ncRNA 13-PTNLD9-TUMOR_peak_7824 chr10 79637908 79638034 + 7.94080 NA intron (NM_004747, intron 1 of 31) MIR|SINE|MIR 48377 NM_004747 9231 Hs.652690 NM_004747 HPRD:04972 DLG5 LP-DLG|P-DLG5|PDLG discs, large homolog 5 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_39955 chr4 184319935 184320041 + 7.94080 NA Intergenic CpG -45801 NM_017632 55602 Hs.644077 NM_017632 HPRD:16683 CDKN2AIP CARF CDKN2A interacting protein protein-coding 13-PTNLD9-TUMOR_peak_42744 chr5 154150628 154150740 + 7.94080 NA intron (NM_015315, intron 1 of 18) AluSx1|SINE|Alu 58222 NM_015315 23367 Hs.292078 NM_015315 HPRD:11225 LARP1 LARP La ribonucleoprotein domain family, member 1 protein-coding 13-PTNLD9-TUMOR_peak_5498 chr1 223214898 223215100 + 7.94080 NA Intergenic Intergenic 101625 NM_003268 7100 Hs.604542 NM_003268 HPRD:04326 TLR5 MELIOS|SLE1|SLEB1|TIL3 toll-like receptor 5 protein-coding 13-PTNLD9-TUMOR_peak_17151 chr15 43477433 43477670 + 7.94080 NA promoter-TSS (NM_012142) promoter-TSS (NM_012142) 85 NR_027513 23582 Hs.36794 NM_012142 CCNDBP1 DIP1|GCIP|HHM cyclin D-type binding-protein 1 protein-coding 13-PTNLD9-TUMOR_peak_16676 chr14 105451958 105452278 + 7.94080 NA promoter-TSS (NM_174891) promoter-TSS (NM_174891) -498 NM_174891 122616 Hs.27183 NM_174891 C14orf79 - chromosome 14 open reading frame 79 protein-coding 13-PTNLD9-TUMOR_peak_12755 chr12 50898647 50899036 + 7.94080 NA promoter-TSS (NM_173602) promoter-TSS (NM_173602) 73 NM_173602 57609 Hs.505516 NM_020849 HPRD:08751 DIP2B - DIP2 disco-interacting protein 2 homolog B (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_35084 chr3 87382589 87382791 + 7.94080 NA Intergenic MER57F|LTR|ERV1 -56953 NM_001122757 5449 Hs.591654 NM_000306 HPRD:01409 POU1F1 CPHD1|GHF-1|PIT1|POU1F1a|Pit-1 POU class 1 homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_39360 chr4 133865662 133865771 + 7.94080 NA Intergenic L1PA2|LINE|L1 -204754 NM_032961 57575 Hs.192859 NM_020815 PCDH10 OL-PCDH|PCDH19 protocadherin 10 protein-coding 13-PTNLD9-TUMOR_peak_23736 chr19 4959354 4959504 + 7.94080 NA intron (NM_001048201, intron 16 of 16) intron (NM_001048201, intron 16 of 16) -9695 NM_015015 23030 Hs.654816 NM_015015 HPRD:11056 KDM4B JMJD2B|TDRD14B lysine (K)-specific demethylase 4B protein-coding 13-PTNLD9-TUMOR_peak_31470 chr20 49465188 49465349 + 7.93836 NA intron (NM_198799, intron 4 of 4) intron (NM_198799, intron 4 of 4) 53837 NM_001010974 55653 Hs.381178 NM_017843 HPRD:06314 BCAS4 CNOL breast carcinoma amplified sequence 4 protein-coding 13-PTNLD9-TUMOR_peak_44876 chr6 37525953 37526110 + 7.93836 NA Intergenic Intergenic -2833 NR_039669 100616413 NR_039669 miRBase:MI0016810 MIR4462 - microRNA 4462 ncRNA 13-PTNLD9-TUMOR_peak_23550 chr18 77725282 77725397 + 7.93775 NA intron (NM_001136180, intron 1 of 3) intron (NM_001136180, intron 1 of 3) 757 NM_001136180 440498 Hs.191582 NM_001136180 ENSG00000226742 HSBP1L1 - heat shock factor binding protein 1-like 1 protein-coding 13-PTNLD9-TUMOR_peak_3309 chr1 145395494 145395890 + 7.92956 NA intron (NM_001039703, intron 68 of 85) intron (NM_001039703, intron 68 of 85) -17499 NM_213653 148738 Hs.632436 NM_145277 HPRD:10521 HFE2 HFE2A|HJV|JH|RGMC hemochromatosis type 2 (juvenile) protein-coding 13-PTNLD9-TUMOR_peak_49484 chr7 143086700 143086807 + 7.92910 NA intron (NM_001010972, intron 8 of 9) intron (NM_001010972, intron 8 of 9) 6974 NR_106952 102465538 NR_106952 MIR6892 hsa-mir-6892 microRNA 6892 ncRNA 13-PTNLD9-TUMOR_peak_27263 chr2 73121757 73121965 + 7.92680 NA Intergenic Intergenic 7349 NM_003124 6697 Hs.301540 NM_003124 HPRD:01632 SPR SDR38C1 sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) protein-coding 13-PTNLD9-TUMOR_peak_35351 chr3 111643263 111643454 + 7.92680 NA intron (NM_001134437, intron 6 of 17) intron (NM_001134437, intron 6 of 17) -54365 NM_018394 55347 Hs.477115 NM_018394 HPRD:07751 ABHD10 - abhydrolase domain containing 10 protein-coding 13-PTNLD9-TUMOR_peak_21263 chr17 44450930 44451049 + 7.92680 NA intron (NR_033799, intron 1 of 6) intron (NR_033799, intron 1 of 6) 810 NR_033799 728806 Hs.735097 NR_033799 NSFP1 NSFP N-ethylmaleimide-sensitive factor pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_47494 chr7 51383145 51383394 + 7.92680 NA intron (NM_001287436, intron 1 of 13) intron (NM_001287436, intron 1 of 13) 1246 NM_015198 23242 Hs.99141 NM_015198 HPRD:10843 COBL - cordon-bleu WH2 repeat protein protein-coding 13-PTNLD9-TUMOR_peak_21274 chr17 44668851 44668970 + 7.92680 NA intron (NR_040116, intron 1 of 19) intron (NR_040116, intron 1 of 19) 810 NR_033799 728806 Hs.735097 NR_033799 NSFP1 NSFP N-ethylmaleimide-sensitive factor pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_11778 chr12 709055 709216 + 7.92680 NA intron (NM_016533, intron 1 of 3) intron (NM_016533, intron 1 of 3) 10444 NM_001294345 4815 Hs.655804 NM_016533 HPRD:09530 NINJ2 - ninjurin 2 protein-coding 13-PTNLD9-TUMOR_peak_37318 chr3 194218661 194218857 + 7.92680 NA Intergenic Intergenic 10890 NR_033929 401106 Hs.407087 NR_033929 LINC00884 - long intergenic non-protein coding RNA 884 ncRNA 13-PTNLD9-TUMOR_peak_15800 chr14 54313113 54313244 + 7.92680 NA Intergenic MamRep4096|DNA|hAT? 102024 NR_049843 100847076 NR_049843 miRBase:MI0019135 MIR5580 - microRNA 5580 ncRNA 13-PTNLD9-TUMOR_peak_20220 chr17 1398662 1398800 + 7.92680 NA 3' UTR (NM_016532, exon 12 of 12) 3' UTR (NM_016532, exon 12 of 12) -2730 NM_001080779 4641 Hs.286226 NM_033375 HPRD:09411 MYO1C MMI-beta|MMIb|NMI|myr2 myosin IC protein-coding 13-PTNLD9-TUMOR_peak_32747 chr22 19832023 19832151 + 7.92680 NA intron (NM_053004, intron 2 of 7) intron (NM_053004, intron 2 of 7) 10284 NM_024627 79680 Hs.105642 NM_024627 HPRD:13382 C22orf29 BOP chromosome 22 open reading frame 29 protein-coding 13-PTNLD9-TUMOR_peak_1570 chr1 45476303 45476417 + 7.92633 NA exon (NM_024602, exon 2 of 21) exon (NM_024602, exon 2 of 21) 667 NM_024602 79654 Hs.525084 NM_024602 HPRD:13383 HECTD3 - HECT domain containing E3 ubiquitin protein ligase 3 protein-coding 13-PTNLD9-TUMOR_peak_33849 chr3 13555773 13555877 + 7.92421 NA Intergenic Intergenic 33981 NM_001136041 79885 Hs.744132 NM_024827 HPRD:09146 HDAC11 HD11 histone deacetylase 11 protein-coding 13-PTNLD9-TUMOR_peak_35953 chr3 132379162 132379275 + 7.92421 NA promoter-TSS (NM_032169) promoter-TSS (NM_032169) 78 NM_024818 79876 Hs.170737 NM_024818 HPRD:15598 UBA5 THIFP1|UBE1DC1 ubiquitin-like modifier activating enzyme 5 protein-coding 13-PTNLD9-TUMOR_peak_13295 chr12 70172635 70172760 + 7.92344 NA promoter-TSS (NM_001278402) promoter-TSS (NM_001278402) -35 NM_001278402 117177 Hs.258209 NM_022456 HPRD:10565 RAB3IP RABIN3 RAB3A interacting protein protein-coding 13-PTNLD9-TUMOR_peak_16026 chr14 65148546 65148722 + 7.92344 NA Intergenic Intergenic -22559 NM_015549 26030 Hs.509637 NM_015549 HPRD:17861 PLEKHG3 ARHGEF43|KIAA0599 pleckstrin homology domain containing, family G (with RhoGef domain) member 3 protein-coding 13-PTNLD9-TUMOR_peak_13507 chr12 95492125 95492340 + 7.91893 NA intron (NM_018351, intron 14 of 20) L2b|LINE|L2 -24828 NM_001032287 7181 Hs.108301 NM_003297 HPRD:03318 NR2C1 TR2 nuclear receptor subfamily 2, group C, member 1 protein-coding 13-PTNLD9-TUMOR_peak_19901 chr16 82077588 82077799 + 7.91893 NA intron (NM_002153, intron 1 of 4) Plat_L3|LINE|CR1 8835 NM_002153 3294 Hs.162795 NM_002153 HPRD:00186 HSD17B2 EDH17B2|HSD17|SDR9C2 hydroxysteroid (17-beta) dehydrogenase 2 protein-coding 13-PTNLD9-TUMOR_peak_36856 chr3 178421495 178421668 + 7.91893 NA intron (NM_001278911, intron 1 of 4) intron (NM_001278911, intron 1 of 4) 145093 NM_001278911 10242 Hs.478368 NM_005832 HPRD:05557 KCNMB2 - potassium large conductance calcium-activated channel, subfamily M, beta member 2 protein-coding 13-PTNLD9-TUMOR_peak_7141 chr10 43447853 43448026 + 7.91893 NA Intergenic Intergenic -45072 NR_049836 100847014 NR_049836 miRBase:MI0019116 MIR5100 - microRNA 5100 ncRNA 13-PTNLD9-TUMOR_peak_5059 chr1 203097332 203097465 + 7.91893 NA intron (NM_001048230, intron 1 of 2) CpG 562 NM_001048230 134 Hs.77867 NM_000674 HPRD:00042 ADORA1 RDC7 adenosine A1 receptor protein-coding 13-PTNLD9-TUMOR_peak_7532 chr10 65472112 65472334 + 7.91893 NA Intergenic Intergenic 191100 NM_001001330 221035 Hs.499833 NM_001001330 HPRD:16582 REEP3 C10orf74 receptor accessory protein 3 protein-coding 13-PTNLD9-TUMOR_peak_47441 chr7 47644620 47644805 + 7.91893 NA Intergenic Intergenic -16825 NR_108090 101929086 Hs.563487 NR_108090 ENSG00000236078 LINC01447 - long intergenic non-protein coding RNA 1447 ncRNA 13-PTNLD9-TUMOR_peak_27948 chr2 109210733 109210845 + 7.91893 NA intron (NM_001193488, intron 1 of 9) intron (NM_001193488, intron 1 of 9) 5867 NM_001193488 3987 Hs.597715 NM_004987 HPRD:03978 LIMS1 PINCH|PINCH-1|PINCH1 LIM and senescent cell antigen-like domains 1 protein-coding 13-PTNLD9-TUMOR_peak_13232 chr12 67986519 67986656 + 7.91893 NA Intergenic MER63B|DNA|hAT-Blackjack -55925 NM_006482 8445 Hs.173135 NM_003583 DYRK2 - dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_53082 chr9 34612140 34612298 + 7.91893 NA promoter-TSS (NM_148179) promoter-TSS (NM_148179) -109 NM_148179 138716 Hs.15961 NM_148178 HPRD:12948 RPP25L C9orf23|bA296L22.5 ribonuclease P/MRP 25kDa subunit-like protein-coding 13-PTNLD9-TUMOR_peak_18782 chr16 23459835 23459995 + 7.91893 NA intron (NM_153603, intron 1 of 16) intron (NM_153603, intron 1 of 16) 4597 NM_153603 91949 Hs.185807 NM_153603 HPRD:07373 COG7 CDG2E component of oligomeric golgi complex 7 protein-coding 13-PTNLD9-TUMOR_peak_17831 chr15 83209362 83209475 + 7.91893 NA promoter-TSS (NM_001021).2 promoter-TSS (NM_001021).2 -123 NR_111944 6218 Hs.433427 NM_001021 HPRD:01600 RPS17 DBA4|RPS17L|RPS17L1|RPS17L2|S17 ribosomal protein S17 protein-coding 13-PTNLD9-TUMOR_peak_14878 chr13 76586271 76586391 + 7.91893 NA Intergenic Intergenic 141157 NM_001257995 729420 Hs.586820 NM_001257995 ENSG00000178734 LMO7DN C13orf45 LMO7 downstream neighbor protein-coding 13-PTNLD9-TUMOR_peak_34261 chr3 37284645 37284816 + 7.91893 NA promoter-TSS (NM_001172713) promoter-TSS (NM_001172713) 48 NM_001172713 2803 Hs.344151 NM_002078 HPRD:03941 GOLGA4 GCP2|GOLG|MU-RMS-40.18|p230 golgin A4 protein-coding 13-PTNLD9-TUMOR_peak_49153 chr7 132064900 132065063 + 7.91893 NA intron (NM_020911, intron 3 of 31) intron (NM_020911, intron 3 of 31) 196342 NM_020911 91584 Hs.511454 NM_020911 HPRD:10901 PLXNA4 FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003 plexin A4 protein-coding 13-PTNLD9-TUMOR_peak_35571 chr3 122661880 122661996 + 7.91893 NA intron (NM_001256347, intron 4 of 22) intron (NM_001256347, intron 4 of 22) 33043 NM_001256347 54437 Hs.210870 NM_018987 HPRD:15322 SEMA5B SEMAG|SemG sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B protein-coding 13-PTNLD9-TUMOR_peak_33409 chr22 44705028 44705286 + 7.91893 NA intron (NM_001099294, intron 1 of 4) L2a|LINE|L2 3574 NM_001099294 85352 Hs.6829 NM_001099294 ENSG00000138944 KIAA1644 - KIAA1644 protein-coding 13-PTNLD9-TUMOR_peak_16092 chr14 68644572 68644684 + 7.91893 NA intron (NM_133510, intron 7 of 10) intron (NM_133510, intron 7 of 10) 358132 NM_133510 5890 Hs.172587 NM_002877 HPRD:04255 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 13-PTNLD9-TUMOR_peak_25870 chr1_gl000191_random 88492 88788 + 7.91893 NA Intergenic Intergenic -38359 NM_054016 10772 Hs.3530 NM_006625 HPRD:05562 SRSF10 FUSIP1|FUSIP2|NSSR|PPP1R149|SFRS13|SFRS13A|SRp38|SRrp40|TASR|TASR1|TASR2 serine/arginine-rich splicing factor 10 protein-coding 13-PTNLD9-TUMOR_peak_34980 chr3 73010011 73010442 + 7.91893 NA intron (NM_001080393, intron 5 of 6) intron (NM_001080393, intron 5 of 6) -35893 NM_174907 151987 Hs.431092 NM_174907 HPRD:11453 PPP4R2 PP4R2 protein phosphatase 4, regulatory subunit 2 protein-coding 13-PTNLD9-TUMOR_peak_51206 chr8 82598341 82598642 + 7.91755 NA promoter-TSS (NM_001144879) promoter-TSS (NM_001144879) 98 NM_005536 3612 Hs.656694 NM_005536 HPRD:03641 IMPA1 IMP|IMPA inositol(myo)-1(or 4)-monophosphatase 1 protein-coding 13-PTNLD9-TUMOR_peak_4981 chr1 201762205 201762381 + 7.91755 NA intron (NM_020443, intron 13 of 29) intron (NM_020443, intron 13 of 29) 5485 NR_046945 100873779 NR_046945 ENSG00000199381 RNU6-79P RNU6-79 RNA, U6 small nuclear 79, pseudogene snRNA 13-PTNLD9-TUMOR_peak_13773 chr12 109327774 109328018 + 7.91755 NA intron (NM_018711, intron 10 of 14) intron (NM_018711, intron 10 of 14) 54039 NM_001917 1610 Hs.113227 NM_001917 HPRD:15917 DAO DAAO|DAMOX|OXDA D-amino-acid oxidase protein-coding 13-PTNLD9-TUMOR_peak_5383 chr1 214620395 214620604 + 7.91755 NA intron (NM_005401, intron 3 of 18) intron (NM_005401, intron 3 of 18) 104525 NM_005401 5784 Hs.193557 NM_005401 HPRD:04402 PTPN14 PEZ|PTP36 protein tyrosine phosphatase, non-receptor type 14 protein-coding 13-PTNLD9-TUMOR_peak_7485 chr10 63040215 63040338 + 7.91755 NA Intergenic Intergenic -172121 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_3709 chr1 153357572 153357782 + 7.91755 NA Intergenic Intergenic 5987 NM_002964 6279 Hs.416073 NM_002964 HPRD:00471 S100A8 60B8AG|CAGA|CFAG|CGLA|CP-10|L1Ag|MA387|MIF|MRP8|NIF|P8 S100 calcium binding protein A8 protein-coding 13-PTNLD9-TUMOR_peak_43374 chr6 215750 215913 + 7.91755 NA Intergenic Intergenic -67672 NR_109817 441123 NR_109817 ENSG00000170590 LINC00266-3 C6orf88|NCRNA00266-3|NCRNA00266C|dJ24O22.2 long intergenic non-protein coding RNA 266-3 ncRNA 13-PTNLD9-TUMOR_peak_2317 chr1 85379321 85379537 + 7.91755 NA Intergenic MIR|SINE|MIR -20533 NM_012152 23566 Hs.674915 NM_012152 HPRD:05486 LPAR3 EDG7|Edg-7|GPCR|HOFNH30|LP-A3|LPA3|RP4-678I3 lysophosphatidic acid receptor 3 protein-coding 13-PTNLD9-TUMOR_peak_14449 chr13 25542650 25542766 + 7.91755 NA promoter-TSS (NR_026730) promoter-TSS (NR_026730) -101 NR_026730 646405 Hs.620592 NM_001126062 TPTE2P1 - transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_38600 chr4 76373131 76373276 + 7.91755 NA Intergenic L1PA2|LINE|L1 61303 NR_103725 25898 Hs.48297 NM_015436 HPRD:07607 RCHY1 ARNIP|CHIMP|PIRH2|PRO1996|RNF199|ZCHY|ZNF363 ring finger and CHY zinc finger domain containing 1, E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_12553 chr12 38676773 38676969 + 7.91755 NA Intergenic Intergenic -33686 NM_001013620 144245 Hs.259305 NM_001013620 ALG10B ALG10|KCR1 ALG10B, alpha-1,2-glucosyltransferase protein-coding 13-PTNLD9-TUMOR_peak_8993 chr11 8956443 8956639 + 7.91755 NA Intergenic LTR64|LTR|ERV1 -1988 NM_020643 56673 Hs.277349 NM_020643 HPRD:12604 C11orf16 - chromosome 11 open reading frame 16 protein-coding 13-PTNLD9-TUMOR_peak_15449 chr14 31560074 31560257 + 7.91755 NA intron (NM_001128126, intron 5 of 5) intron (NM_001128126, intron 5 of 5) 64316 NM_001254728 11154 Hs.293411 NM_007077 HPRD:06257 AP4S1 AP47B|CLA20|CLAPS4|CPSQ6|SPG52 adaptor-related protein complex 4, sigma 1 subunit protein-coding 13-PTNLD9-TUMOR_peak_21420 chr17 48036577 48036797 + 7.91755 NA Intergenic Intergenic -9875 NM_138281 1748 Hs.591167 NM_001934 HPRD:03553 DLX4 BP1|DLX7|DLX8|DLX9 distal-less homeobox 4 protein-coding 13-PTNLD9-TUMOR_peak_31633 chr20 55149953 55150072 + 7.91755 NA Intergenic L2c|LINE|L2 41710 NM_001013646 388799 Hs.287759 NM_001013646 HPRD:18388 FAM209B C20orf107|dJ1153D9.4 family with sequence similarity 209, member B protein-coding 13-PTNLD9-TUMOR_peak_52204 chr8 135175121 135175247 + 7.91261 NA Intergenic ERVL-B4-int|LTR|ERVL 276445 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 13-PTNLD9-TUMOR_peak_23661 chr19 2477250 2477387 + 7.91134 NA intron (NM_015675, intron 3 of 3) CpG 1195 NM_015675 4616 Hs.110571 NM_015675 HPRD:05382 GADD45B GADD45BETA|MYD118 growth arrest and DNA-damage-inducible, beta protein-coding 13-PTNLD9-TUMOR_peak_27065 chr2 64582010 64582504 + 7.91134 NA Intergenic Intergenic -99070 NM_014181 29094 Hs.372208 NM_014181 HPRD:13708 LGALSL GRP lectin, galactoside-binding-like protein-coding 13-PTNLD9-TUMOR_peak_30913 chr20 35095882 35096048 + 7.91134 NA intron (NM_183006, intron 1 of 6) intron (NM_183006, intron 1 of 6) 5779 NM_183006 22839 Hs.249600 NM_014902 HPRD:16826 DLGAP4 DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4 discs, large (Drosophila) homolog-associated protein 4 protein-coding 13-PTNLD9-TUMOR_peak_48645 chr7 102167275 102167387 + 7.90924 NA Intergenic L1ME3|LINE|L1 -9107 NM_001277335 100271927 Hs.530089 NM_001277335 ENSG00000170667 RASA4B - RAS p21 protein activator 4B protein-coding 13-PTNLD9-TUMOR_peak_44669 chr6 33281801 33281970 + 7.90924 NA TTS (NM_001145338).3 TTS (NM_001145338).3 279 NM_172209 6892 Hs.370937 NM_003190 HPRD:09061 TAPBP NGS17|TAPA|TPN|TPSN TAP binding protein (tapasin) protein-coding 13-PTNLD9-TUMOR_peak_26284 chr2 21217123 21217290 + 7.90002 NA Intergenic Intergenic 49739 NM_000384 338 Hs.120759 NM_000384 HPRD:00133 APOB FLDB|LDLCQ4 apolipoprotein B protein-coding 13-PTNLD9-TUMOR_peak_15085 chr13 109808689 109808866 + 7.90002 NA intron (NM_015011, intron 32 of 34) intron (NM_015011, intron 32 of 34) 10874 NR_047700 100885782 Hs.655942 NR_047700 ENSG00000236242 MYO16-AS1 - MYO16 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_25505 chr19 51711874 51712020 + 7.90002 NA Intergenic MLT1A|LTR|ERVL-MaLR -1682 NR_107041 102465873 NR_107041 MIR8074 hsa-mir-8074 microRNA 8074 ncRNA 13-PTNLD9-TUMOR_peak_13693 chr12 106520319 106520523 + 7.90002 NA intron (NM_014840, intron 1 of 6) intron (NM_014840, intron 1 of 6) 13390 NM_014840 9891 Hs.524692 NM_014840 HPRD:12171 NUAK1 ARK5 NUAK family, SNF1-like kinase, 1 protein-coding 13-PTNLD9-TUMOR_peak_55784 chrX 47037471 47037601 + 7.90002 NA intron (NM_005676, intron 7 of 23) intron (NM_005676, intron 7 of 23) -12663 NM_153280 7317 Hs.533273 NM_003334 HPRD:02440 UBA1 A1S9|A1S9T|A1ST|AMCX1|CFAP124|GXP1|POC20|SMAX2|UBA1A|UBE1|UBE1X ubiquitin-like modifier activating enzyme 1 protein-coding 13-PTNLD9-TUMOR_peak_23331 chr18 57364547 57364709 + 7.90002 NA promoter-TSS (NM_133459) promoter-TSS (NM_133459) 16 NM_133459 147372 Hs.34333 NM_133459 HPRD:08703 CCBE1 - collagen and calcium binding EGF domains 1 protein-coding 13-PTNLD9-TUMOR_peak_47870 chr7 72974471 72974603 + 7.90002 NA Intergenic Intergenic -2472 NM_001301061 9275 Hs.647051 NM_001707 HPRD:05786 BCL7B - B-cell CLL/lymphoma 7B protein-coding 13-PTNLD9-TUMOR_peak_42723 chr5 153569594 153569712 + 7.90002 NA promoter-TSS (NM_198321) promoter-TSS (NM_198321) -642 NM_198321 55568 Hs.631797 NM_017540 HPRD:12157 GALNT10 GALNACT10|PPGALNACT10|PPGANTASE10 polypeptide N-acetylgalactosaminyltransferase 10 protein-coding 13-PTNLD9-TUMOR_peak_51329 chr8 95961624 95961779 + 7.90002 NA promoter-TSS (NM_001135733) promoter-TSS (NM_001135733) -86 NM_001135733 94241 Hs.492261 NM_033285 HPRD:09367 TP53INP1 SIP|TP53DINP1|TP53INP1A|TP53INP1B|Teap|p53DINP1 tumor protein p53 inducible nuclear protein 1 protein-coding 13-PTNLD9-TUMOR_peak_53198 chr9 37840702 37840823 + 7.90002 NA intron (NM_024345, intron 2 of 6) Tigger3b|DNA|TcMar-Tigger 39979 NM_024345 79269 Hs.118394 NM_024345 HPRD:08319 DCAF10 WDR32 DDB1 and CUL4 associated factor 10 protein-coding 13-PTNLD9-TUMOR_peak_10506 chr11 71136983 71137192 + 7.90002 NA Intergenic L1ME3|LINE|L1 -2687 NR_038862 399923 Hs.128191 NM_001001680 HPRD:13457 FLJ42102 - uncharacterized LOC399923 ncRNA 13-PTNLD9-TUMOR_peak_42448 chr5 142756555 142757007 + 7.90002 NA intron (NM_001018075, intron 2 of 8) intron (NM_001018075, intron 2 of 8) 26473 NM_000176 2908 Hs.122926 NM_000176 HPRD:00679 NR3C1 GCCR|GCR|GR|GRL nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) protein-coding 13-PTNLD9-TUMOR_peak_14342 chr12 132628818 132628920 + 7.90002 NA promoter-TSS (NM_175066) promoter-TSS (NM_175066) 11 NM_175066 317781 Hs.445168 NM_175066 HPRD:10865 DDX51 - DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 protein-coding 13-PTNLD9-TUMOR_peak_51471 chr8 103540792 103541108 + 7.90002 NA Intergenic (CTGTG)n|Simple_repeat|Simple_repeat -22898 NM_024410 4956 Hs.159274 NM_024410 HPRD:01687 ODF1 CT133|HSPB10|ODF|ODF2|ODF27|ODFP|ODFPG|ODFPGA|ODFPGB|RT7|SODF outer dense fiber of sperm tails 1 protein-coding 13-PTNLD9-TUMOR_peak_3584 chr1 150953752 150954272 + 7.90002 NA promoter-TSS (NM_003568) promoter-TSS (NM_003568) -487 NM_003568 8416 Hs.3346 NM_003568 ENSG00000143412 ANXA9 ANX31 annexin A9 protein-coding 13-PTNLD9-TUMOR_peak_35737 chr3 126465433 126465581 + 7.90002 NA intron (NM_032343, intron 4 of 7) intron (NM_032343, intron 4 of 7) 42444 NM_032343 84303 Hs.518119 NM_032343 HPRD:13047 CHCHD6 CHCM1|PPP1R23 coiled-coil-helix-coiled-coil-helix domain containing 6 protein-coding 13-PTNLD9-TUMOR_peak_48694 chr7 104003939 104004159 + 7.90002 NA intron (NM_199000, intron 1 of 2) MER96|DNA|hAT 34945 NM_199000 375612 Hs.659164 NM_199000 LHFPL3 LHFPL4 lipoma HMGIC fusion partner-like 3 protein-coding 13-PTNLD9-TUMOR_peak_45810 chr6 104156986 104157106 + 7.90002 NA Intergenic L1PA2|LINE|L1 1150748 NR_104424 57531 Hs.434340 NM_020771 HPRD:17086 HACE1 - HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 13-PTNLD9-TUMOR_peak_15972 chr14 62127420 62127518 + 7.90002 NA Intergenic Intergenic -34650 NM_181054 3091 Hs.597216 NM_001530 HPRD:04517 HIF1A HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78 hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) protein-coding 13-PTNLD9-TUMOR_peak_50661 chr8 38749610 38749769 + 7.90002 NA Intergenic Intergenic -9064 NM_021623 59339 Hs.369123 NM_021623 ENSG00000169499 PLEKHA2 TAPP2 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 2 protein-coding 13-PTNLD9-TUMOR_peak_23372 chr18 60331384 60331505 + 7.90002 NA Intergenic Intergenic -51228 NM_194449 23239 Hs.465337 NM_194449 HPRD:15145 PHLPP1 PHLPP|PLEKHE1|SCOP PH domain and leucine rich repeat protein phosphatase 1 protein-coding 13-PTNLD9-TUMOR_peak_12412 chr12 29583478 29583637 + 7.90002 NA intron (NM_183378, intron 27 of 27) L1PBa1|LINE|L1 41330 NR_073170 101055625 Hs.569158 NR_073170 ENSG00000257599 OVCH1-AS1 - OVCH1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_11854 chr12 3420229 3420443 + 7.89482 NA Intergenic Intergenic -70179 NM_001256536 56341 Hs.504530 NM_019854 HPRD:11029 PRMT8 HRMT1L3|HRMT1L4 protein arginine methyltransferase 8 protein-coding 13-PTNLD9-TUMOR_peak_318 chr1 9291742 9291840 + 7.89482 NA Intergenic Intergenic -3072 NM_004285 9563 Hs.463511 NM_004285 HPRD:00681 H6PD CORTRD1|G6PDH|GDH hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase) protein-coding 13-PTNLD9-TUMOR_peak_41510 chr5 90607638 90607756 + 7.89482 NA intron (NR_103549, intron 2 of 2) AmnSINE1|SINE|Deu 2522 NR_103548 100505994 Hs.628363 NR_103548 ENSG00000248323 LUCAT1 SCAL1 lung cancer associated transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_35010 chr3 75443871 75443996 + 7.89482 NA Intergenic Intergenic 40333 NR_024241 692099 Hs.591652 NR_024241 ENSG00000244026 FAM86DP FAM86D family with sequence similarity 86, member D, pseudogene pseudo 13-PTNLD9-TUMOR_peak_7298 chr10 48959480 48959618 + 7.89482 NA intron (NR_111968, intron 1 of 5) intron (NR_111968, intron 1 of 5) -6920 NR_003611 399761 Hs.571994 NM_001040053 ENSG00000204164 BMS1P5 BMS1LP1|BMS1LP5|BMS1P1|bA556L1.3 BMS1 pseudogene 5 pseudo 13-PTNLD9-TUMOR_peak_7192 chr10 45454679 45454907 + 7.89482 NA promoter-TSS (NM_032023) promoter-TSS (NM_032023) 344 NR_033842 220980 Hs.568801 NR_033842 ENSG00000224812 TMEM72-AS1 - TMEM72 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_14078 chr12 121570541 121570672 + 7.89482 NA promoter-TSS (NR_033955) promoter-TSS (NR_033955) -16 NR_033953 5027 Hs.729169 NM_002562 HPRD:03977 P2RX7 P2X7 purinergic receptor P2X, ligand-gated ion channel, 7 protein-coding 13-PTNLD9-TUMOR_peak_20354 chr17 6410989 6411155 + 7.89482 NA intron (NM_001165966, intron 2 of 18) intron (NM_001165966, intron 2 of 18) 48805 NM_001165966 83394 Hs.183983 NM_031220 HPRD:07498 PITPNM3 ACKR6|CORD5|NIR1|RDGBA3 PITPNM family member 3 protein-coding 13-PTNLD9-TUMOR_peak_28373 chr2 128158788 128159202 + 7.89481 NA Intergenic Intergenic -17001 NM_000312 5624 Hs.224698 NM_000312 HPRD:01466 PROC APC|PC|PROC1|THPH3|THPH4 protein C (inactivator of coagulation factors Va and VIIIa) protein-coding 13-PTNLD9-TUMOR_peak_39631 chr4 152246361 152246523 + 7.89481 NA Intergenic CpG 48117 NM_183375 345062 Hs.651266 NM_183375 HPRD:07110 PRSS48 ESSPL protease, serine, 48 protein-coding 13-PTNLD9-TUMOR_peak_27398 chr2 85154072 85154354 + 7.89481 NA Intergenic Intergenic 21450 NM_021103 9168 Hs.446574 NM_021103 HPRD:01779 TMSB10 MIG12|TB10 thymosin beta 10 protein-coding 13-PTNLD9-TUMOR_peak_35255 chr3 107356751 107356959 + 7.89481 NA intron (NM_001276286, intron 2 of 16) AluJr|SINE|Alu 115072 NM_001276286 56987 Hs.124366 NM_020235 HPRD:10688 BBX ARTC1|HBP2|HSPC339|MDS001 bobby sox homolog (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_25040 chr19 41915349 41915454 + 7.89481 NA intron (NM_001164783, intron 1 of 8) L2b|LINE|L2 11707 NM_001164783 593 Hs.433307 NM_000709 HPRD:02009 BCKDHA BCKDE1A|MSU|MSUD1|OVD1A branched chain keto acid dehydrogenase E1, alpha polypeptide protein-coding 13-PTNLD9-TUMOR_peak_10269 chr11 65756550 65756700 + 7.89481 NA Intergenic Intergenic -12925 NM_003860 8815 Hs.433759 NM_003860 HPRD:04817 BANF1 BAF|BCRP1|D14S1460|NGPS barrier to autointegration factor 1 protein-coding 13-PTNLD9-TUMOR_peak_36198 chr3 141131722 141131867 + 7.89481 NA intron (NM_001080412, intron 7 of 7) intron (NM_001080412, intron 7 of 7) -74132 NM_006506 5922 Hs.98445 NM_006506 ENSG00000155903 RASA2 GAP1M RAS p21 protein activator 2 protein-coding 13-PTNLD9-TUMOR_peak_35590 chr3 123351340 123351480 + 7.89481 NA intron (NM_053025, intron 29 of 33) intron (NM_053025, intron 29 of 33) -11880 NM_053032 4638 Hs.477375 NM_005965 HPRD:02952 MYLK AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK myosin light chain kinase protein-coding 13-PTNLD9-TUMOR_peak_18433 chr16 8845922 8846090 + 7.89481 NA intron (NM_020686, intron 5 of 15) intron (NM_020686, intron 5 of 15) 31433 NM_001127448 18 Hs.336768 NM_000663 HPRD:00661 ABAT GABA-AT|GABAT|NPD009 4-aminobutyrate aminotransferase protein-coding 13-PTNLD9-TUMOR_peak_52173 chr8 134419356 134419454 + 7.89481 NA Intergenic MIRb|SINE|MIR -109858 NM_006096 10397 Hs.372914 NM_006096 HPRD:05586 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 13-PTNLD9-TUMOR_peak_22054 chr17 74255331 74255527 + 7.89481 NA Intergenic Intergenic -5857 NM_182565 283991 Hs.744981 NM_182565 HPRD:14533 UBALD2 FAM100B UBA-like domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_53565 chr9 72092474 72092629 + 7.89481 NA intron (NM_001163, intron 2 of 12) L1PA2|LINE|L1 148310 NM_004816 9413 Hs.118003 NM_004816 HPRD:16255 FAM189A2 C9orf61|X123 family with sequence similarity 189, member A2 protein-coding 13-PTNLD9-TUMOR_peak_52350 chr8 142312709 142312872 + 7.88741 NA Intergenic Intergenic -37858 NR_024441 731779 Hs.586414 NR_024441 ENSG00000253595 LINC01300 - long intergenic non-protein coding RNA 1300 ncRNA 13-PTNLD9-TUMOR_peak_13758 chr12 109090259 109090485 + 7.88741 NA intron (NM_001105237, intron 2 of 10) intron (NM_001105237, intron 2 of 10) 6402 NM_001105237 23603 Hs.330384 NM_014325 HPRD:09244 CORO1C HCRNN4 coronin, actin binding protein, 1C protein-coding 13-PTNLD9-TUMOR_peak_21494 chr17 49008469 49008717 + 7.88389 NA Intergenic CpG -63254 NM_001243877 10140 Hs.703321 NM_005749 HPRD:09273 TOB1 APRO6|PIG49|TOB|TROB|TROB1 transducer of ERBB2, 1 protein-coding 13-PTNLD9-TUMOR_peak_15540 chr14 35180460 35180593 + 7.88389 NA non-coding (NR_028131, exon 4 of 4) non-coding (NR_028131, exon 4 of 4) 2497 NM_021914 1073 Hs.180141 NM_021914 HPRD:03262 CFL2 NEM7 cofilin 2 (muscle) protein-coding 13-PTNLD9-TUMOR_peak_52659 chr9 4293343 4293613 + 7.88389 NA intron (NM_001042413, intron 1 of 10) intron (NM_001042413, intron 1 of 10) 6557 NM_001042413 169792 Hs.162125 NM_152629 HPRD:13582 GLIS3 ZNF515 GLIS family zinc finger 3 protein-coding 13-PTNLD9-TUMOR_peak_24217 chr19 15229129 15229304 + 7.88389 NA intron (NM_006844, intron 9 of 15) MLT1G3|LTR|ERVL-MaLR 7394 NM_006844 10994 Hs.78880 NM_006844 HPRD:16152 ILVBL 209L8|AHAS|ILV2H ilvB (bacterial acetolactate synthase)-like protein-coding 13-PTNLD9-TUMOR_peak_21964 chr17 73031069 73031469 + 7.88389 NA intron (NR_110835, intron 2 of 7) tRNA-Arg-CGG|tRNA|tRNA 2607 NR_110835 23510 Hs.514468 NM_015353 HPRD:17176 KCTD2 - potassium channel tetramerization domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_34073 chr3 23965456 23965651 + 7.88297 NA TTS (NM_001253384) TTS (NM_001253384) 6357 NM_001253380 6138 Hs.381219 NM_002948 HPRD:16043 RPL15 DBA12|EC45|L15|RPL10|RPLY10|RPYL10 ribosomal protein L15 protein-coding 13-PTNLD9-TUMOR_peak_14122 chr12 122369481 122369882 + 7.88297 NA exon (NM_144668, exon 4 of 22) exon (NM_144668, exon 4 of 22) 13218 NM_001178003 144406 Hs.709837 NM_144668 HPRD:14570 WDR66 CaM-IP4 WD repeat domain 66 protein-coding 13-PTNLD9-TUMOR_peak_41674 chr5 106724291 106724487 + 7.88297 NA intron (NM_001962, intron 2 of 4) intron (NM_001962, intron 2 of 4) 282207 NM_001962 1946 Hs.288741 NM_001962 HPRD:03324 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin-A5 protein-coding 13-PTNLD9-TUMOR_peak_34371 chr3 43812310 43812445 + 7.88297 NA Intergenic Intergenic 80002 NM_016006 51099 Hs.19385 NM_016006 ABHD5 CDS|CGI58|IECN2|NCIE2 abhydrolase domain containing 5 protein-coding 13-PTNLD9-TUMOR_peak_26986 chr2 56561916 56562016 + 7.88297 NA intron (NM_001080433, intron 2 of 5) intron (NM_001080433, intron 2 of 5) -149061 NR_125368 100129434 Hs.580330 NR_125368 ENSG00000233251 LOC100129434 - uncharacterized LOC100129434 ncRNA 13-PTNLD9-TUMOR_peak_22539 chr18 9117251 9117619 + 7.88297 NA intron (NM_021074, intron 1 of 7) intron (NM_021074, intron 1 of 7) 14807 NM_021074 4729 Hs.464572 NM_021074 HPRD:02757 NDUFV2 CI-24k NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa protein-coding 13-PTNLD9-TUMOR_peak_42658 chr5 150158233 150158373 + 7.88297 NA 5' UTR (NM_032947, exon 1 of 2) 5' UTR (NM_032947, exon 1 of 2) 795 NM_032947 85027 Hs.29444 NM_032947 HPRD:12212 SMIM3 C5orf62|MST150|NID67 small integral membrane protein 3 protein-coding 13-PTNLD9-TUMOR_peak_48212 chr7 86669516 86669626 + 7.88297 NA promoter-TSS (NM_001291990) promoter-TSS (NM_001291990) -21 NM_001291990 222223 Hs.208093 NM_152748 HPRD:13405 KIAA1324L EIG121L KIAA1324-like protein-coding 13-PTNLD9-TUMOR_peak_16022 chr14 65129945 65130114 + 7.88297 NA Intergenic Intergenic -41164 NM_015549 26030 Hs.509637 NM_015549 HPRD:17861 PLEKHG3 ARHGEF43|KIAA0599 pleckstrin homology domain containing, family G (with RhoGef domain) member 3 protein-coding 13-PTNLD9-TUMOR_peak_25606 chr19 54048530 54048661 + 7.88297 NA intron (NM_001253798, intron 2 of 6) intron (NM_001253798, intron 2 of 6) 6553 NM_001253800 55422 Hs.185674 NM_018555 HPRD:05827 ZNF331 RITA|ZNF361|ZNF463 zinc finger protein 331 protein-coding 13-PTNLD9-TUMOR_peak_49238 chr7 135540779 135540906 + 7.88016 NA Intergenic Intergenic -107248 NM_205855 389558 Hs.55200 NM_205855 HPRD:15613 FAM180A UNQ1940 family with sequence similarity 180, member A protein-coding 13-PTNLD9-TUMOR_peak_27989 chr2 110515720 110515884 + 7.87703 NA Intergenic AluSg|SINE|Alu -34533 NM_032260 84220 Hs.469630 NM_005054 HPRD:04128 RGPD5 BS-63|BS63|HEL161|RGP5 RANBP2-like and GRIP domain containing 5 protein-coding 13-PTNLD9-TUMOR_peak_53105 chr9 35116918 35117046 + 7.87703 NA Intergenic Intergenic -1089 NM_025182 80256 Hs.301696 NM_025182 HPRD:13869 FAM214B KIAA1539|P1.11659_5|bA182N22.6 family with sequence similarity 214, member B protein-coding 13-PTNLD9-TUMOR_peak_22024 chr17 73771110 73771239 + 7.87555 NA Intergenic Intergenic 4686 NM_005324 3021 Hs.180877 NM_005324 HPRD:03036 H3F3B H3.3B H3 histone, family 3B (H3.3B) protein-coding 13-PTNLD9-TUMOR_peak_34992 chr3 73613193 73613292 + 7.87098 NA intron (NR_121660, intron 1 of 1) intron (NR_121660, intron 1 of 1) 42769 NR_121660 101927296 Hs.662049 NR_121660 LOC101927296 - uncharacterized LOC101927296 ncRNA 13-PTNLD9-TUMOR_peak_2150 chr1 68355753 68355852 + 7.87098 NA intron (NR_040077, intron 1 of 9) L2|LINE|L2 -56647 NM_018841 55970 Hs.431101 NM_018841 HPRD:13592 GNG12 - guanine nucleotide binding protein (G protein), gamma 12 protein-coding 13-PTNLD9-TUMOR_peak_9527 chr11 35052340 35052476 + 7.87098 NA Intergenic Intergenic 89024 NR_039836 100616437 NR_039836 MIR1343 - microRNA 1343 ncRNA 13-PTNLD9-TUMOR_peak_14600 chr13 37020032 37020247 + 7.87098 NA Intergenic Tigger3a|DNA|TcMar-Tigger 13730 NM_003914 8900 Hs.417050 NM_003914 HPRD:04946 CCNA1 CT146 cyclin A1 protein-coding 13-PTNLD9-TUMOR_peak_8160 chr10 101769576 101769759 + 7.87098 NA promoter-TSS (NM_015221) promoter-TSS (NM_015221) 9 NM_015221 23268 Hs.500771 NM_015221 HPRD:10918 DNMBP ARHGEF36|TUBA dynamin binding protein protein-coding 13-PTNLD9-TUMOR_peak_4196 chr1 162666216 162666321 + 7.87098 NA intron (NM_006182, intron 2 of 17) intron (NM_006182, intron 2 of 17) 64040 NM_001014796 4921 Hs.275757 NM_006182 HPRD:01868 DDR2 MIG20a|NTRKR3|TKT|TYRO10 discoidin domain receptor tyrosine kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_637 chr1 22283333 22283768 + 7.87098 NA Intergenic Intergenic -19760 NM_005529 3339 Hs.562227 NM_005529 HPRD:00804 HSPG2 HSPG|PLC|PRCAN|SJA|SJS|SJS1 heparan sulfate proteoglycan 2 protein-coding 13-PTNLD9-TUMOR_peak_56497 chrX 131352175 131352317 + 7.87098 NA promoter-TSS (NM_021183) promoter-TSS (NM_021183) -57 NM_021183 57826 Hs.119889 NM_021183 HPRD:06706 RAP2C - RAP2C, member of RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_34390 chr3 44867143 44867385 + 7.87098 NA intron (NM_020242, intron 20 of 34) intron (NM_020242, intron 20 of 34) -36116 NR_030290 693149 NR_030290 MIR564 MIRN564|hsa-mir-564 microRNA 564 ncRNA 13-PTNLD9-TUMOR_peak_45823 chr6 106196697 106197001 + 7.87098 NA Intergenic Intergenic -337346 NM_001198 639 Hs.436023 NM_001198 HPRD:04572 PRDM1 BLIMP1|PRDI-BF1 PR domain containing 1, with ZNF domain protein-coding 13-PTNLD9-TUMOR_peak_52821 chr9 17408671 17408816 + 7.87098 NA intron (NM_017738, intron 15 of 25) AluY|SINE|Alu -170209 NM_003026 6456 Hs.75149 NM_003026 HPRD:05125 SH3GL2 CNSA2|EEN-B1|SH3D2A|SH3P4 SH3-domain GRB2-like 2 protein-coding 13-PTNLD9-TUMOR_peak_53963 chr9 93326012 93326162 + 7.87098 NA intron (NR_034157, intron 1 of 5) intron (NR_034157, intron 1 of 5) 18941 NR_034157 340515 Hs.522284 NM_001105317 LINC01501 - long intergenic non-protein coding RNA 1501 ncRNA 13-PTNLD9-TUMOR_peak_45264 chr6 50088154 50088278 + 7.87098 NA Intergenic L2|LINE|L2 -71852 NM_001037498 245915 Hs.571092 NM_001037498 HPRD:18757 DEFB112 DEFB-12 defensin, beta 112 protein-coding 13-PTNLD9-TUMOR_peak_560 chr1 17330495 17330677 + 7.87098 NA intron (NM_001141974, intron 6 of 26) MIR|SINE|MIR 7881 NM_022089 23400 Hs.128866 NM_022089 HPRD:13677 ATP13A2 CLN12|HSA9947|KRPPD|PARK9 ATPase type 13A2 protein-coding 13-PTNLD9-TUMOR_peak_38118 chr4 25610423 25610629 + 7.87098 NA Intergenic Intergenic -46909 NM_001177998 10568 Hs.479372 NM_006424 HPRD:07251 SLC34A2 NAPI-3B|NAPI-IIb|NPTIIb solute carrier family 34 (type II sodium/phosphate contransporter), member 2 protein-coding 13-PTNLD9-TUMOR_peak_48476 chr7 99527169 99527290 + 7.87098 NA promoter-TSS (NM_181538) promoter-TSS (NM_181538) 14 NM_181538 349149 Hs.647524 NM_181538 HPRD:13580 GJC3 CX29|CX30.2|CX31.3|GJE1 gap junction protein, gamma 3, 30.2kDa protein-coding 13-PTNLD9-TUMOR_peak_488 chr1 15417038 15417137 + 7.87098 NA intron (NM_201628, intron 8 of 14) intron (NM_201628, intron 8 of 14) 61873 NR_027136 200197 Hs.531424 NM_182534 TMEM51-AS1 C1orf126 TMEM51 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_33147 chr22 32534137 32534313 + 7.87098 NA Intergenic HERVIP10FH-int|LTR|ERV1 16261 NR_040114 23782 Hs.581098 NR_040114 ENSG00000234479 AP1B1P1 ADTB1L1|dJ127L4.2 adaptor-related protein complex 1, beta 1 subunit pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_51340 chr8 96690728 96690869 + 7.87098 NA intron (NR_038205, intron 2 of 2) MER52A|LTR|ERV1 269778 NR_036611 100500773 Hs.741582 NR_036611 LOC100500773 - serine/arginine-rich splicing factor 3 pseudogene pseudo 13-PTNLD9-TUMOR_peak_39277 chr4 124907571 124907804 + 7.87098 NA Intergenic Intergenic 212268 NR_027106 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 13-PTNLD9-TUMOR_peak_19734 chr16 72325443 72325596 + 7.87098 NA Intergenic Intergenic -119170 NM_001160213 83449 Hs.714939 NM_031293 HPRD:10157 PMFBP1 - polyamine modulated factor 1 binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_22435 chr18 2096482 2096973 + 7.87098 NA Intergenic LTR84a|LTR|ERVL 474762 NM_022840 64863 Hs.126888 NM_022840 HPRD:14390 METTL4 HsT661 methyltransferase like 4 protein-coding 13-PTNLD9-TUMOR_peak_41972 chr5 128256179 128256288 + 7.87098 NA Intergenic Intergenic -44977 NM_014031 28965 Hs.49765 NM_014031 HPRD:09173 SLC27A6 ACSVL2|FACVL2|FATP6|VLCS-H1 solute carrier family 27 (fatty acid transporter), member 6 protein-coding 13-PTNLD9-TUMOR_peak_35167 chr3 98754114 98754230 + 7.87098 NA Intergenic L1PA4|LINE|L1 -133639 NM_080927 131566 Hs.203691 NM_080927 HPRD:10567 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_41047 chr5 63440309 63440463 + 7.87098 NA Intergenic LTR33|LTR|ERVL -21285 NM_001113561 285671 Hs.657843 NM_178532 HPRD:15263 RNF180 - ring finger protein 180 protein-coding 13-PTNLD9-TUMOR_peak_4788 chr1 186601037 186601180 + 7.87098 NA Intergenic L2|LINE|L2 48451 NM_000963 5743 Hs.196384 NM_000963 HPRD:02599 PTGS2 COX-2|COX2|GRIPGHS|PGG/HS|PGHS-2|PHS-2|hCox-2 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase) protein-coding 13-PTNLD9-TUMOR_peak_3848 chr1 155157543 155157647 + 7.86669 NA TTS (NM_001204295) TTS (NM_001204295) 5111 NM_001204289 4582 Hs.89603 NM_002456 HPRD:01152 MUC1 ADMCKD|ADMCKD1|CA 15-3|CD227|EMA|H23AG|KL-6|MAM6|MCD|MCKD|MCKD1|MUC-1|MUC-1/SEC|MUC-1/X|MUC1/ZD|PEM|PEMT|PUM mucin 1, cell surface associated protein-coding 13-PTNLD9-TUMOR_peak_36123 chr3 139031831 139032035 + 7.86520 NA Intergenic L2c|LINE|L2 -30928 NM_020191 56945 Hs.745001 NM_020191 HPRD:10430 MRPS22 C3orf5|COXPD5|GIBT|MRP-S22|RPMS22 mitochondrial ribosomal protein S22 protein-coding 13-PTNLD9-TUMOR_peak_24497 chr19 21203747 21203898 + 7.86520 NA intron (NM_001172671, intron 1 of 4) intron (NM_001172671, intron 1 of 4) 396 NM_001172671 80264 Hs.729202 NM_025189 HPRD:15788 ZNF430 - zinc finger protein 430 protein-coding 13-PTNLD9-TUMOR_peak_14442 chr13 25086334 25086465 + 7.86520 NA intron (NM_006437, intron 1 of 33) intron (NM_006437, intron 1 of 33) 549 NM_006437 143 Hs.744855 NM_006437 HPRD:09598 PARP4 ADPRTL1|ARTD4|PARP-4|PARPL|PH5P|VAULT3|VPARP|VWA5C|p193 poly (ADP-ribose) polymerase family, member 4 protein-coding 13-PTNLD9-TUMOR_peak_45117 chr6 43941183 43941304 + 7.86520 NA Intergenic Intergenic -27094 NM_001171992 221416 Hs.531926 NM_153246 HPRD:14640 C6orf223 - chromosome 6 open reading frame 223 protein-coding 13-PTNLD9-TUMOR_peak_27441 chr2 85812928 85813253 + 7.86520 NA intron (NM_006634, intron 1 of 2) L2a|LINE|L2 1559 NM_006634 10791 Hs.534373 NM_006634 HPRD:09513 VAMP5 - vesicle-associated membrane protein 5 protein-coding 13-PTNLD9-TUMOR_peak_3776 chr1 154325496 154325840 + 7.86520 NA Intergenic Intergenic 25392 NM_020452 57198 Hs.435700 NM_020452 HPRD:05794 ATP8B2 ATPID ATPase, aminophospholipid transporter, class I, type 8B, member 2 protein-coding 13-PTNLD9-TUMOR_peak_4267 chr1 165868178 165868402 + 7.86221 NA intron (NM_012474, intron 4 of 6) intron (NM_012474, intron 4 of 6) -8868 NR_037431 100500832 NR_037431 MIR3658 - microRNA 3658 ncRNA 13-PTNLD9-TUMOR_peak_13172 chr12 65207581 65207817 + 7.86221 NA Intergenic Intergenic -10653 NM_015279 23329 Hs.192492 NM_015279 ENSG00000111490 TBC1D30 - TBC1 domain family, member 30 protein-coding 13-PTNLD9-TUMOR_peak_989 chr1 32686445 32686609 + 7.86221 NA intron (NM_019118, intron 3 of 4) intron (NM_019118, intron 3 of 4) 1399 NM_019118 56063 Hs.272299 NM_019118 HPRD:15270 TMEM234 AASL548|C1orf91|PRO1105|RP4-622L5|dJ622L5.7 transmembrane protein 234 protein-coding 13-PTNLD9-TUMOR_peak_19966 chr16 85062394 85062493 + 7.86221 NA intron (NM_001286566, intron 1 of 11) intron (NM_001286566, intron 1 of 11) 1086 NM_001286566 9764 Hs.301658 NM_014732 HPRD:17192 KIAA0513 - KIAA0513 protein-coding 13-PTNLD9-TUMOR_peak_31476 chr20 49575234 49575480 + 7.86221 NA promoter-TSS (NM_003859) promoter-TSS (NM_003859) 6 NM_014484 27304 Hs.159410 NM_014484 HPRD:10092 MOCS3 UBA4 molybdenum cofactor synthesis 3 protein-coding 13-PTNLD9-TUMOR_peak_37770 chr4 6327038 6327140 + 7.86221 NA intron (NM_020416, intron 8 of 8) intron (NM_020416, intron 8 of 8) 55512 NM_006005 7466 Hs.518602 NM_006005 HPRD:05864 WFS1 CTRCT41|WFRS|WFS|WFSL Wolfram syndrome 1 (wolframin) protein-coding 13-PTNLD9-TUMOR_peak_51568 chr8 107876348 107876546 + 7.86221 NA Intergenic L2c|LINE|L2 -93975 NM_139166 137735 Hs.374668 NM_139166 HPRD:11608 ABRA STARS actin-binding Rho activating protein protein-coding 13-PTNLD9-TUMOR_peak_34891 chr3 67704956 67705179 + 7.86221 NA promoter-TSS (NM_001177599) promoter-TSS (NM_001177599) -29 NM_001177599 8801 Hs.644919 NM_003848 HPRD:06799 SUCLG2 GBETA succinate-CoA ligase, GDP-forming, beta subunit protein-coding 13-PTNLD9-TUMOR_peak_25594 chr19 53836536 53836656 + 7.86221 NA promoter-TSS (NM_138374) promoter-TSS (NM_138374) -406 NM_138374 91664 Hs.720672 NM_138374 ENSG00000213799 ZNF845 - zinc finger protein 845 protein-coding 13-PTNLD9-TUMOR_peak_12899 chr12 53815350 53815530 + 7.86221 NA Intergenic Intergenic -2199 NM_020547 269 Hs.659889 NM_020547 HPRD:02978 AMHR2 AMHR|MISR2|MISRII|MRII anti-Mullerian hormone receptor, type II protein-coding 13-PTNLD9-TUMOR_peak_42044 chr5 131833971 131834136 + 7.86215 NA Intergenic Intergenic -7588 NM_002198 3659 Hs.436061 NM_002198 HPRD:00961 IRF1 IRF-1|MAR interferon regulatory factor 1 protein-coding 13-PTNLD9-TUMOR_peak_28232 chr2 120010462 120010666 + 7.85995 NA intron (NM_001008410, intron 3 of 4) intron (NM_001008410, intron 3 of 4) 29180 NM_018234 55240 Hs.647822 NM_018234 HPRD:10285 STEAP3 AHMIO2|STMP3|TSAP6|dudlin-2 STEAP family member 3, metalloreductase protein-coding 13-PTNLD9-TUMOR_peak_1232 chr1 39416924 39417025 + 7.85995 NA Intergenic AluY|SINE|Alu -9518 NM_017821 54933 Hs.524626 NM_017821 HPRD:07151 RHBDL2 RRP2 rhomboid, veinlet-like 2 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_1744 chr1 50798781 50798889 + 7.85995 NA Intergenic CpG 90284 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT-like family A2 protein-coding 13-PTNLD9-TUMOR_peak_41445 chr5 82016147 82016316 + 7.85995 NA Intergenic L2a|LINE|L2 -119743 NR_039773 100616297 NR_039773 MIR3977 - microRNA 3977 ncRNA 13-PTNLD9-TUMOR_peak_49058 chr7 129864848 129865056 + 7.85995 NA Intergenic LTR8|LTR|ERV1 17248 NM_145268 136263 Hs.351816 NM_145268 HPRD:14060 SSMEM1 C7orf45 serine-rich single-pass membrane protein 1 protein-coding 13-PTNLD9-TUMOR_peak_52020 chr8 129279507 129279693 + 7.85995 NA Intergenic MIRc|SINE|MIR 117238 NR_031613 100302281 NR_031613 miRBase:MI0006341 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 13-PTNLD9-TUMOR_peak_35377 chr3 112287635 112287747 + 7.85995 NA intron (NM_017945, intron 2 of 6) L3|LINE|CR1 6834 NM_017945 55032 Hs.237480 NM_017945 SLC35A5 - solute carrier family 35, member A5 protein-coding 13-PTNLD9-TUMOR_peak_51430 chr8 101981117 101981356 + 7.85995 NA Intergenic LTR13A|LTR|ERVK -15613 NM_003406 7534 Hs.492407 NM_003406 HPRD:03183 YWHAZ 14-3-3-zeta|HEL-S-3|HEL4|KCIP-1|YWHAD tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta protein-coding 13-PTNLD9-TUMOR_peak_26356 chr2 26496992 26497149 + 7.85995 NA intron (NM_001281512, intron 5 of 14) intron (NM_001281512, intron 5 of 14) 29454 NM_001281512 3032 Hs.515848 NM_000183 HPRD:00887 HADHB ECHB|MTPB|TP-BETA hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), beta subunit protein-coding 13-PTNLD9-TUMOR_peak_6449 chr10 10692850 10692970 + 7.85995 NA Intergenic L1PA2|LINE|L1 143967 NR_027082 207107 Hs.31562 NR_027082 ENSG00000225383 SFTA1P SFTPF surfactant associated 1, pseudogene pseudo 13-PTNLD9-TUMOR_peak_9977 chr11 60897621 60897766 + 7.85995 NA TTS (NM_017966) TTS (NM_017966) 27763 NM_014207 921 Hs.58685 NM_014207 HPRD:01078 CD5 LEU1|T1 CD5 molecule protein-coding 13-PTNLD9-TUMOR_peak_23666 chr19 2543713 2543845 + 7.85995 NA intron (NM_052847, intron 3 of 4) CpG 67656 NM_015675 4616 Hs.110571 NM_015675 HPRD:05382 GADD45B GADD45BETA|MYD118 growth arrest and DNA-damage-inducible, beta protein-coding 13-PTNLD9-TUMOR_peak_52033 chr8 129665734 129665832 + 7.85995 NA Intergenic L3|LINE|CR1 -88858 NR_121673 101927774 Hs.628730 NR_121672 ENSG00000254275 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 13-PTNLD9-TUMOR_peak_38224 chr4 40517982 40518132 + 7.85995 NA promoter-TSS (NM_019027) promoter-TSS (NM_019027) -67 NM_019027 54502 Hs.518727 NM_019027 ENSG00000163694 RBM47 NET18 RNA binding motif protein 47 protein-coding 13-PTNLD9-TUMOR_peak_28979 chr2 166602485 166602608 + 7.85995 NA Intergenic Intergenic 48257 NM_004482 2591 Hs.170986 NM_004482 HPRD:03453 GALNT3 GalNAc-T3|HFTC|HHS polypeptide N-acetylgalactosaminyltransferase 3 protein-coding 13-PTNLD9-TUMOR_peak_41516 chr5 91253565 91253775 + 7.85995 NA Intergenic FRAM|SINE|Alu -574521 NM_020801 57561 Hs.24684 NM_020801 HPRD:09810 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_55069 chr9 140121670 140121808 + 7.85744 NA promoter-TSS (NM_001190228) promoter-TSS (NM_001190228) -279 NM_001190228 643596 Hs.730186 NM_001190228 ENSG00000233198 RNF224 - ring finger protein 224 protein-coding 13-PTNLD9-TUMOR_peak_35808 chr3 128104431 128104638 + 7.85744 NA intron (NM_021937, intron 6 of 6) intron (NM_021937, intron 6 of 6) -77903 NR_037890 285224 Hs.683815 NR_037890 ENSG00000242049 DNAJB8-AS1 - DNAJB8 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_27307 chr2 74649239 74649507 + 7.85744 NA exon (NM_032118, exon 2 of 10) exon (NM_032118, exon 2 of 10) 488 NM_032118 84058 Hs.643480 NM_032118 HPRD:08577 WDR54 - WD repeat domain 54 protein-coding 13-PTNLD9-TUMOR_peak_44575 chr6 31790008 31790177 + 7.85449 NA Intergenic Intergenic -5420 NM_005346 3304 Hs.719966 NM_005346 HPRD:06784 HSPA1B HSP70-1B|HSP70-2 heat shock 70kDa protein 1B protein-coding 13-PTNLD9-TUMOR_peak_49287 chr7 137617747 137617851 + 7.85430 NA intron (NM_194071, intron 1 of 11) MIR3|SINE|MIR -20295 NM_001243523 100130880 Hs.712161 NM_001243523 LOC100130880 - uncharacterized LOC100130880 protein-coding 13-PTNLD9-TUMOR_peak_3496 chr1 149577077 149577225 + 7.85004 NA intron (NR_111955, intron 1 of 1) CpG 684 NR_024511 728855 Hs.456578 NR_024510 ENSG00000235398 LINC00623 CH17-118O6.2 long intergenic non-protein coding RNA 623 ncRNA 13-PTNLD9-TUMOR_peak_55037 chr9 139452638 139452894 + 7.84713 NA Intergenic AluY|SINE|Alu 10472 NR_121577 101928483 Hs.170035 NR_121577 MIR4674HG - MIR4674 host gene (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_39268 chr4 124594191 124594355 + 7.84713 NA intron (NR_027105, intron 2 of 4) intron (NR_027105, intron 2 of 4) 20333 NR_027105 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 13-PTNLD9-TUMOR_peak_49030 chr7 129354553 129354734 + 7.84713 NA intron (NM_005011, intron 8 of 10) intron (NM_005011, intron 8 of 10) 55689 NR_029614 406958 NR_029614 miRBase:MI0000272 MIR182 MIRN182|miRNA182 microRNA 182 ncRNA 13-PTNLD9-TUMOR_peak_22775 chr18 20960067 20960490 + 7.84713 NA intron (NM_032933, intron 5 of 14) MIR|SINE|MIR 57647 NM_032933 85019 Hs.137562 NM_032933 HPRD:12692 TMEM241 C18orf45|hVVT transmembrane protein 241 protein-coding 13-PTNLD9-TUMOR_peak_1548 chr1 45118655 45118761 + 7.84713 NA TTS (NM_001300746) TTS (NM_001300746) 21572 NM_024587 79639 Hs.22157 NM_024587 HPRD:07989 TMEM53 NET4 transmembrane protein 53 protein-coding 13-PTNLD9-TUMOR_peak_37473 chr3 197149152 197149306 + 7.84713 NA Intergenic MER76|LTR|ERVL -123086 NM_001290983 1739 Hs.292549 NM_004087 HPRD:03007 DLG1 DLGH1|SAP-97|SAP97|dJ1061C18.1.1|hdlg discs, large homolog 1 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_10381 chr11 67652356 67652582 + 7.84713 NA Intergenic HERVS71-int|LTR|ERV1 -79662 NR_024249 645332 Hs.535094 NR_024249 ENSG00000160172 FAM86C2P - family with sequence similarity 86, member A pseudogene pseudo 13-PTNLD9-TUMOR_peak_19947 chr16 84759762 84759944 + 7.84713 NA intron (NM_001272075, intron 2 of 14) intron (NM_001272075, intron 2 of 14) 26298 NR_073578 9100 Hs.136778 NM_005153 HPRD:07029 USP10 UBPO ubiquitin specific peptidase 10 protein-coding 13-PTNLD9-TUMOR_peak_49250 chr7 135962857 135963092 + 7.84713 NA Intergenic Intergenic -300770 NM_001128619 767558 Hs.602015 NM_001128619 LUZP6 MPD6|MTPNUT leucine zipper protein 6 protein-coding 13-PTNLD9-TUMOR_peak_4336 chr1 168409116 168409282 + 7.84713 NA Intergenic Intergenic -17305 NR_037851 100505918 Hs.568494 NR_037851 LOC100505918 - uncharacterized LOC100505918 ncRNA 13-PTNLD9-TUMOR_peak_44961 chr6 41008331 41008624 + 7.84713 NA Intergenic Intergenic -1539 NM_173561 222643 Hs.158357 NM_173561 HPRD:09844 UNC5CL MUXA|ZUD unc-5 homolog C (C. elegans)-like protein-coding 13-PTNLD9-TUMOR_peak_25629 chr19 54599111 54599393 + 7.84713 NA exon (NM_133169, exon 5 of 6) exon (NM_133169, exon 5 of 6) 6742 NM_001282349 126014 Hs.347655 NM_130771 HPRD:06035 OSCAR PIGR3|PIgR-3 osteoclast associated, immunoglobulin-like receptor protein-coding 13-PTNLD9-TUMOR_peak_11382 chr11 118869780 118869908 + 7.84713 NA intron (NR_104049, intron 3 of 10) intron (NR_104049, intron 3 of 10) 1001 NR_104049 338657 Hs.534613 NM_198489 HPRD:13234 CCDC84 - coiled-coil domain containing 84 protein-coding 13-PTNLD9-TUMOR_peak_10534 chr11 71752622 71753053 + 7.84713 NA intron (NR_104476, intron 2 of 24) intron (NR_104476, intron 2 of 24) 27500 NR_104178 100128494 Hs.713607 NR_104178 LOC100128494 - uncharacterized LOC100128494 ncRNA 13-PTNLD9-TUMOR_peak_35819 chr3 128369016 128369193 + 7.83748 NA intron (NM_002950, intron 1 of 9) CpG 615 NM_002950 6184 Hs.518244 NM_002950 HPRD:01598 RPN1 OST1|RBPH1 ribophorin I protein-coding 13-PTNLD9-TUMOR_peak_9304 chr11 20385585 20385686 + 7.83587 NA promoter-TSS (NM_001098523) promoter-TSS (NM_001098523) -52 NM_001098523 10553 Hs.90753 NM_006410 HPRD:09288 HTATIP2 CC3|SDR44U1|TIP30 HIV-1 Tat interactive protein 2, 30kDa protein-coding 13-PTNLD9-TUMOR_peak_7278 chr10 48266399 48266634 + 7.83587 NA intron (NM_001271702, intron 9 of 11) MIRb|SINE|MIR 11312 NM_001040084 653145 Hs.535306 NM_001040084 ENSG00000165390 ANXA8 ANX8 annexin A8 protein-coding 13-PTNLD9-TUMOR_peak_48541 chr7 100401237 100401397 + 7.83587 NA intron (NM_004444, intron 16 of 16) intron (NM_004444, intron 16 of 16) 23826 NM_004444 2050 Hs.437008 NM_004444 HPRD:02481 EPHB4 HTK|MYK1|TYRO11 EPH receptor B4 protein-coding 13-PTNLD9-TUMOR_peak_3642 chr1 151805167 151805271 + 7.83587 NA promoter-TSS (NM_005060) promoter-TSS (NM_005060) -871 NM_005060 6097 Hs.256022 NM_005060 HPRD:04250 RORC NR1F3|RORG|RZR-GAMMA|RZRG|TOR RAR-related orphan receptor C protein-coding 13-PTNLD9-TUMOR_peak_39471 chr4 141677872 141678356 + 7.83587 NA promoter-TSS (NM_015130) promoter-TSS (NM_015130) -643 NM_015130 23158 Hs.480819 NM_015130 HPRD:11115 TBC1D9 MDR1 TBC1 domain family, member 9 (with GRAM domain) protein-coding 13-PTNLD9-TUMOR_peak_53592 chr9 73035369 73035559 + 7.83569 NA Intergenic Intergenic -5891 NM_001206 687 Hs.150557 NM_001206 HPRD:04211 KLF9 BTEB|BTEB1 Kruppel-like factor 9 protein-coding 13-PTNLD9-TUMOR_peak_10178 chr11 64636618 64636751 + 7.83057 NA intron (NM_001282445, intron 3 of 5) intron (NM_001282445, intron 3 of 5) 9556 NM_006795 10938 Hs.523774 NM_006795 HPRD:09325 EHD1 H-PAST|HPAST1|PAST|PAST1 EH-domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_45093 chr6 43595106 43595223 + 7.83057 NA promoter-TSS (NM_001286216) promoter-TSS (NM_001286216) -74 NM_001286216 54676 Hs.485449 NM_019096 HPRD:08465 GTPBP2 - GTP binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_29466 chr2 198318546 198318703 + 7.83057 NA intron (NM_025147, intron 1 of 4) CpG 393 NM_025147 80219 Hs.606592 NM_025147 HPRD:08582 COQ10B - coenzyme Q10 homolog B (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_49914 chr8 57775 57924 + 7.83057 NA Intergenic Intergenic 59175 NM_001005504 441308 Hs.690459 NM_001005504 OR4F21 OR4F21P olfactory receptor, family 4, subfamily F, member 21 protein-coding 13-PTNLD9-TUMOR_peak_52532 chr8 145727585 145727771 + 7.82996 NA TTS (NM_032902) TTS (NM_032902) -1787 NM_005309 2875 Hs.103502 NM_005309 HPRD:00689 GPT AAT1|ALT1|GPT1 glutamic-pyruvate transaminase (alanine aminotransferase) protein-coding 13-PTNLD9-TUMOR_peak_22611 chr18 11850127 11850281 + 7.82995 NA intron (NM_001261443, intron 6 of 12) intron (NM_001261443, intron 6 of 12) -1185 NM_020412 57132 Hs.656244 NM_020412 HPRD:12106 CHMP1B C10orf2|C18-ORF2|C18orf2|CHMP1.5|Vps46-2|Vps46B|hVps46-2 charged multivesicular body protein 1B protein-coding 13-PTNLD9-TUMOR_peak_35816 chr3 128327335 128327486 + 7.82995 NA Intergenic CpG -32481 NR_125802 23434 Hs.194283 NM_007354 HPRD:13607 C3orf27 GR6 chromosome 3 open reading frame 27 ncRNA 13-PTNLD9-TUMOR_peak_28040 chr2 111432319 111432420 + 7.82995 NA intron (NM_001278617, intron 1 of 23) intron (NM_001278617, intron 1 of 23) 3315 NM_001278617 699 Hs.469649 NM_004336 HPRD:03907 BUB1 BUB1A|BUB1L|hBUB1 BUB1 mitotic checkpoint serine/threonine kinase protein-coding 13-PTNLD9-TUMOR_peak_4329 chr1 168255413 168255643 + 7.82995 NA intron (NM_005149, intron 1 of 7) L1MB8|LINE|L1 5250 NM_005149 9095 Hs.716656 NM_005149 HPRD:05214 TBX19 TBS19|TPIT|dJ747L4.1 T-box 19 protein-coding 13-PTNLD9-TUMOR_peak_32539 chr21 45929557 45929700 + 7.82995 NA intron (NR_103707, intron 5 of 6) intron (NR_103707, intron 5 of 6) 3701 NR_103707 54082 Hs.570444 NR_103707 TSPEAR-AS1 C21orf31 TSPEAR antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_18907 chr16 28985942 28986087 + 7.82995 NA promoter-TSS (NM_001142448) promoter-TSS (NM_001142448) -82 NM_001142449 83985 Hs.617449 NM_032038 HPRD:11599 SPNS1 HSpin1|LAT|PP2030|SPIN1|SPINL|nrs spinster homolog 1 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_37039 chr3 185661371 185661522 + 7.82995 NA Intergenic LTR41|LTR|ERVL -5522 NM_004593 6434 Hs.533122 NM_004593 TRA2B Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B transformer 2 beta homolog (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_1067 chr1 35246718 35246843 + 7.82995 NA promoter-TSS (NM_024009) promoter-TSS (NM_024009) -10 NM_024009 2707 Hs.522561 NM_024009 HPRD:04505 GJB3 CX31|DFNA2|DFNA2B|EKV gap junction protein, beta 3, 31kDa protein-coding 13-PTNLD9-TUMOR_peak_1624 chr1 46813852 46813986 + 7.82995 NA intron (NM_001256128, intron 3 of 5) L2c|LINE|L2 7069 NM_001256127 387338 Hs.163424 NM_199044 NSUN4 SHTAP NOP2/Sun domain family, member 4 protein-coding 13-PTNLD9-TUMOR_peak_53532 chr9 70637932 70638099 + 7.82995 NA Intergenic AluJb|SINE|Alu -147804 NM_001286836 220869 Hs.355950 NM_001024916 HPRD:14134 CBWD5 DC36 COBW domain containing 5 protein-coding 13-PTNLD9-TUMOR_peak_36608 chr3 161009413 161009591 + 7.82995 NA Intergenic Intergenic 70403 NM_015938 51068 Hs.598836 NM_015938 HPRD:13026 NMD3 - NMD3 ribosome export adaptor protein-coding 13-PTNLD9-TUMOR_peak_3949 chr1 156541117 156541415 + 7.82995 NA intron (NM_178229, intron 1 of 37) intron (NM_178229, intron 1 of 37) 1130 NM_178229 128239 Hs.591495 NM_178229 HPRD:11051 IQGAP3 - IQ motif containing GTPase activating protein 3 protein-coding 13-PTNLD9-TUMOR_peak_3801 chr1 154702860 154702959 + 7.82995 NA intron (NM_002249, intron 4 of 7) intron (NM_002249, intron 4 of 7) -102453 NM_001025107 103 Hs.12341 NM_001111 HPRD:07528 ADAR ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136 adenosine deaminase, RNA-specific protein-coding 13-PTNLD9-TUMOR_peak_42813 chr5 158611906 158612060 + 7.82536 NA intron (NM_001199382, intron 3 of 10) intron (NM_001199382, intron 3 of 10) 22673 NM_001199382 153830 Hs.349306 NM_144726 HPRD:08113 RNF145 - ring finger protein 145 protein-coding 13-PTNLD9-TUMOR_peak_1745 chr1 50818180 50818308 + 7.82536 NA Intergenic Intergenic 70875 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT-like family A2 protein-coding 13-PTNLD9-TUMOR_peak_53838 chr9 87827897 87828136 + 7.82536 NA Intergenic (CA)n|Simple_repeat|Simple_repeat 528928 NM_001286715 23287 Hs.719980 NM_015239 HPRD:08442 AGTPBP1 CCP1|NNA1 ATP/GTP binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_46555 chr6 168626317 168626494 + 7.82536 NA Intergenic Intergenic -17213 NR_110870 101929420 Hs.571211 NR_110870 ENSG00000234647 LOC101929420 - uncharacterized LOC101929420 ncRNA 13-PTNLD9-TUMOR_peak_54246 chr9 103327595 103327717 + 7.82536 NA intron (NM_003692, intron 8 of 9) L2a|LINE|L2 -12705 NM_001018116 347273 Hs.99004 NM_001018116 HPRD:18599 MURC CAVIN4|cavin-4 muscle-related coiled-coil protein protein-coding 13-PTNLD9-TUMOR_peak_14368 chr12 133757994 133758174 + 7.82536 NA promoter-TSS (NM_001165885) promoter-TSS (NM_001165885) 24 NM_001165882 10795 Hs.124047 NM_003415 HPRD:05300 ZNF268 HZF3 zinc finger protein 268 protein-coding 13-PTNLD9-TUMOR_peak_8796 chr11 1793841 1794112 + 7.82536 NA Intergenic Intergenic -8754 NM_001909 1509 Hs.654447 NM_001909 HPRD:00291 CTSD CLN10|CPSD|HEL-S-130P cathepsin D protein-coding 13-PTNLD9-TUMOR_peak_11670 chr11 130481770 130482098 + 7.82536 NA Intergenic MER91B|DNA|hAT-Tip100 -54696 NR_107019 102466873 NR_107019 MIR8052 hsa-mir-8052 microRNA 8052 ncRNA 13-PTNLD9-TUMOR_peak_51036 chr8 61966846 61967134 + 7.82536 NA Intergenic Intergenic -86683 NR_034003 100130298 Hs.636194 NR_034003 LOC100130298 - hCG1816373-like ncRNA 13-PTNLD9-TUMOR_peak_31730 chr20 57733130 57733246 + 7.82536 NA Intergenic Intergenic -32887 NM_178457 128611 Hs.473204 NM_178457 ENSG00000124203 ZNF831 C20orf174|dJ492J12.1 zinc finger protein 831 protein-coding 13-PTNLD9-TUMOR_peak_14520 chr13 30706811 30706981 + 7.82536 NA Intergenic Intergenic 174295 NM_001014380 84056 Hs.243596 NM_032116 HPRD:13753 KATNAL1 - katanin p60 subunit A-like 1 protein-coding 13-PTNLD9-TUMOR_peak_54785 chr9 129392818 129393072 + 7.82536 NA intron (NM_002316, intron 2 of 7) intron (NM_002316, intron 2 of 7) 16223 NM_002316 4010 Hs.129133 NM_002316 HPRD:03986 LMX1B LMX1.2|NPS1 LIM homeobox transcription factor 1, beta protein-coding 13-PTNLD9-TUMOR_peak_31320 chr20 47001958 47002143 + 7.82536 NA Intergenic Intergenic 13396 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 13-PTNLD9-TUMOR_peak_38741 chr4 83755265 83755427 + 7.82536 NA intron (NM_001300744, intron 19 of 23) intron (NM_001300744, intron 19 of 23) -35336 NM_001037582 79966 Hs.379191 NM_024906 HPRD:09756 SCD5 ACOD4|FADS4|HSCD5|SCD2|SCD4 stearoyl-CoA desaturase 5 protein-coding 13-PTNLD9-TUMOR_peak_6196 chr1 247802686 247802886 + 7.82536 NA Intergenic CpG 33557 NM_001005487 441933 Hs.553834 NM_001005487 HPRD:17680 OR13G1 OR1-37 olfactory receptor, family 13, subfamily G, member 1 protein-coding 13-PTNLD9-TUMOR_peak_16851 chr15 27599436 27599574 + 7.82536 NA intron (NM_033223, intron 5 of 9) intron (NM_033223, intron 5 of 9) -193039 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 LOC101928869 - uncharacterized LOC101928869 ncRNA 13-PTNLD9-TUMOR_peak_20969 chr17 37321137 37321285 + 7.82536 NA intron (NM_001143968, intron 2 of 5) intron (NM_001143968, intron 2 of 5) 1203 NM_001143968 390790 Hs.568007 NM_001143968 ARL5C ARL12 ADP-ribosylation factor-like 5C protein-coding 13-PTNLD9-TUMOR_peak_39502 chr4 142957974 142958179 + 7.82536 NA intron (NM_001101669, intron 25 of 25) intron (NM_001101669, intron 25 of 25) 400327 NM_000585 3600 Hs.168132 NM_000585 HPRD:02776 IL15 IL-15 interleukin 15 protein-coding 13-PTNLD9-TUMOR_peak_19437 chr16 57411954 57412094 + 7.82536 NA intron (NM_002996, intron 1 of 2) intron (NM_002996, intron 1 of 2) 5610 NM_002996 6376 Hs.531668 NM_002996 HPRD:03529 CX3CL1 ABCD-3|C3Xkine|CXC3|CXC3C|NTN|NTT|SCYD1|fractalkine|neurotactin chemokine (C-X3-C motif) ligand 1 protein-coding 13-PTNLD9-TUMOR_peak_18778 chr16 23379909 23380069 + 7.82536 NA intron (NM_000336, intron 5 of 12) intron (NM_000336, intron 5 of 12) 66398 NM_000336 6338 Hs.414614 NM_000336 HPRD:02861 SCNN1B BESC1|ENaCb|ENaCbeta|SCNEB sodium channel, non-voltage-gated 1, beta subunit protein-coding 13-PTNLD9-TUMOR_peak_43249 chr5 177729314 177729446 + 7.82536 NA intron (NM_173465, intron 3 of 28) CpG -69557 NR_103509 85007 Hs.248746 NM_153373 HPRD:18482 PHYKPL AGXT2L2|PHLU 5-phosphohydroxy-L-lysine phospho-lyase protein-coding 13-PTNLD9-TUMOR_peak_16258 chr14 75033538 75033776 + 7.82536 NA intron (NM_000428, intron 3 of 35) intron (NM_000428, intron 3 of 35) 45377 NM_000428 4053 Hs.512776 NM_000428 HPRD:03650 LTBP2 C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3 latent transforming growth factor beta binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_42643 chr5 149979719 149979888 + 7.82536 NA promoter-TSS (NM_001166208) promoter-TSS (NM_001166208) -839 NM_001166208 11346 Hs.435228 NM_007286 HPRD:12179 SYNPO - synaptopodin protein-coding 13-PTNLD9-TUMOR_peak_45339 chr6 53480573 53480789 + 7.82536 NA Intergenic Intergenic -42608 NR_110840 101927136 Hs.509788 NR_110840 ENSG00000231683 LOC101927136 - uncharacterized LOC101927136 ncRNA 13-PTNLD9-TUMOR_peak_5177 chr1 204958480 204958654 + 7.82536 NA intron (NM_015090, intron 24 of 26) intron (NM_015090, intron 24 of 26) 45213 NM_001160331 23114 Hs.13349 NM_015090 HPRD:12372 NFASC NF|NRCAML neurofascin protein-coding 13-PTNLD9-TUMOR_peak_51593 chr8 110035105 110035276 + 7.82536 NA Intergenic Intergenic -64463 NM_003301 7201 Hs.3022 NM_003301 HPRD:11767 TRHR TRH-R thyrotropin-releasing hormone receptor protein-coding 13-PTNLD9-TUMOR_peak_28638 chr2 143220069 143220238 + 7.82536 NA Intergenic HERV16-int|LTR|ERVL -330883 NM_018557 53353 Hs.656461 NM_018557 HPRD:16383 LRP1B LRP-DIT|LRPDIT low density lipoprotein receptor-related protein 1B protein-coding 13-PTNLD9-TUMOR_peak_54857 chr9 131369976 131370191 + 7.82536 NA intron (NM_001195532, intron 31 of 54) intron (NM_001195532, intron 31 of 54) 49046 NM_052844 89891 Hs.495240 NM_052844 HPRD:15666 WDR34 DIC5|FAP133|SRTD11|bA216B9.3 WD repeat domain 34 protein-coding 13-PTNLD9-TUMOR_peak_21392 chr17 47467449 47467558 + 7.81969 NA Intergenic Intergenic 24717 NM_001281496 5245 Hs.514303 NM_002634 HPRD:01454 PHB HEL-215|HEL-S-54e|PHB1 prohibitin protein-coding 13-PTNLD9-TUMOR_peak_54973 chr9 136112797 136112928 + 7.81969 NA Intergenic Intergenic -28225 NR_110243 29989 Hs.449629 NM_014581 HPRD:05209 OBP2B LCN14|OBPIIb odorant binding protein 2B protein-coding 13-PTNLD9-TUMOR_peak_34088 chr3 24254435 24254567 + 7.81969 NA intron (NM_001128176, intron 4 of 10) intron (NM_001128176, intron 4 of 10) 61686 NR_121667 101927854 Hs.570625 NR_121667 LOC101927854 - uncharacterized LOC101927854 ncRNA 13-PTNLD9-TUMOR_peak_37464 chr3 197037008 197037123 + 7.81969 NA Intergenic Intergenic -10922 NM_001290983 1739 Hs.292549 NM_004087 HPRD:03007 DLG1 DLGH1|SAP-97|SAP97|dJ1061C18.1.1|hdlg discs, large homolog 1 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_43134 chr5 175156955 175157050 + 7.81969 NA Intergenic Intergenic 48538 NM_022304 3274 Hs.247885 NM_022304 HPRD:00816 HRH2 H2R histamine receptor H2 protein-coding 13-PTNLD9-TUMOR_peak_6345 chr10 4818192 4818354 + 7.81969 NA Intergenic L1MC3|LINE|L1 -50096 NM_001271021 83592 Hs.657944 NM_031436 HPRD:07472 AKR1E2 AKR1CL2|AKRDC1|LoopADR|hTSP|htAKR aldo-keto reductase family 1, member E2 protein-coding 13-PTNLD9-TUMOR_peak_53249 chr9 39817491 39817867 + 7.81969 NA Intergenic CpG -67263 NM_001085452 647060 Hs.575677 NM_001040065 ENSG00000204848 SPATA31A1 C9orf36|C9orf36A|FAM75A1|FAM75A2|SPATA31A2 SPATA31 subfamily A, member 1 protein-coding 13-PTNLD9-TUMOR_peak_33623 chr3 7351583 7351719 + 7.81969 NA intron (NM_181874, intron 4 of 10) intron (NM_181874, intron 4 of 10) 225320 NR_046606 100873937 Hs.570608 NR_046606 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_27976 chr2 109802339 109802524 + 7.81969 NA intron (NM_001099289, intron 1 of 9) intron (NM_001099289, intron 1 of 9) -44387 NR_036223 100422863 NR_036223 miRBase:MI0015869 MIR4265 - microRNA 4265 ncRNA 13-PTNLD9-TUMOR_peak_29737 chr2 212476078 212476239 + 7.81969 NA intron (NM_005235, intron 19 of 27) LTR12F|LTR|ERV1 814926 NR_031643 100313771 NR_031643 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 13-PTNLD9-TUMOR_peak_52207 chr8 135351047 135351288 + 7.81969 NA Intergenic MER21C|LTR|ERVL -259147 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_5989 chr1 236047042 236047165 + 7.81969 NA promoter-TSS (NR_102436) promoter-TSS (NR_102436) -95 NM_001301365 1130 Hs.532411 NM_000081 HPRD:06060 LYST CHS|CHS1 lysosomal trafficking regulator protein-coding 13-PTNLD9-TUMOR_peak_29646 chr2 206750332 206750559 + 7.81969 NA Intergenic Intergenic 200461 NM_017759 54891 Hs.445036 NM_017759 HPRD:07894 INO80D - INO80 complex subunit D protein-coding 13-PTNLD9-TUMOR_peak_42889 chr5 162923428 162923551 + 7.81969 NA Intergenic LTR43|LTR|ERV1 -2425 NR_109892 101927813 Hs.726818 NR_109892 HMMR-AS1 - HMMR antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_35291 chr3 108852188 108852296 + 7.81969 NA Intergenic Intergenic -3319 NR_033977 401081 Hs.280892 NR_033977 ENSG00000241224 FLJ22763 - uncharacterized LOC401081 ncRNA 13-PTNLD9-TUMOR_peak_51564 chr8 107777496 107777699 + 7.81969 NA intron (NM_139166, intron 1 of 1) intron (NM_139166, intron 1 of 1) 4875 NM_139166 137735 Hs.374668 NM_139166 HPRD:11608 ABRA STARS actin-binding Rho activating protein protein-coding 13-PTNLD9-TUMOR_peak_38711 chr4 82235603 82236013 + 7.81969 NA Intergenic Intergenic -99537 NM_001282485 5593 Hs.232044 NM_006259 HPRD:09034 PRKG2 PRKGR2|cGK2|cGKII protein kinase, cGMP-dependent, type II protein-coding 13-PTNLD9-TUMOR_peak_11533 chr11 125642722 125642910 + 7.81969 NA Intergenic Intergenic 5898 NM_212555 399967 Hs.369185 NM_212555 HPRD:15617 PATE2 C11orf38|PATE-M|UNQ3112 prostate and testis expressed 2 protein-coding 13-PTNLD9-TUMOR_peak_9348 chr11 26642798 26642939 + 7.81969 NA intron (NM_031418, intron 17 of 26) L2a|LINE|L2 -49053 NM_001135091 143662 Hs.407152 NM_145650 HPRD:16349 MUC15 MUC-15|PAS3|PASIII mucin 15, cell surface associated protein-coding 13-PTNLD9-TUMOR_peak_18750 chr16 22211069 22211166 + 7.81969 NA Intergenic Intergenic -6475 NM_013302 29904 Hs.498892 NM_013302 EEF2K HSU93850|eEF-2K eukaryotic elongation factor-2 kinase protein-coding 13-PTNLD9-TUMOR_peak_47194 chr7 32203227 32203377 + 7.81969 NA intron (NM_001191058, intron 3 of 18) intron (NM_001191058, intron 3 of 18) -92254 NM_001191059 5137 Hs.728862 NM_005020 HPRD:04287 PDE1C Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C, calmodulin-dependent 70kDa protein-coding 13-PTNLD9-TUMOR_peak_27769 chr2 98279335 98279548 + 7.81290 NA intron (NM_005735, intron 1 of 10) intron (NM_005735, intron 1 of 10) 1120 NM_005735 10120 Hs.98791 NM_005735 HPRD:05508 ACTR1B ARP1B|CTRN2|PC3 ARP1 actin-related protein 1 homolog B, centractin beta (yeast) protein-coding 13-PTNLD9-TUMOR_peak_54029 chr9 96213436 96213661 + 7.81290 NA promoter-TSS (NM_014612) promoter-TSS (NM_014612) -430 NM_001286723 23196 Hs.372003 NM_014612 HPRD:12928 FAM120A C9orf10|DNAPTP1|DNAPTP5|OSSA family with sequence similarity 120A protein-coding 13-PTNLD9-TUMOR_peak_4571 chr1 179027995 179028272 + 7.81140 NA intron (NM_014864, intron 4 of 7) intron (NM_014864, intron 4 of 7) -22979 NM_022371 64222 Hs.584957 NM_022371 TOR3A ADIR|ADIR2 torsin family 3, member A protein-coding 13-PTNLD9-TUMOR_peak_14274 chr12 126683672 126683906 + 7.81140 NA Intergenic Intergenic 103251 NR_110053 101927464 Hs.443932 NR_110053 ENSG00000256342 LOC101927464 - uncharacterized LOC101927464 ncRNA 13-PTNLD9-TUMOR_peak_36092 chr3 138136507 138136675 + 7.81140 NA Intergenic Intergenic -16824 NM_031913 83850 Hs.477711 NM_031913 HPRD:13054 ESYT3 CHR3SYT|E-Syt3|FAM62C extended synaptotagmin-like protein 3 protein-coding 13-PTNLD9-TUMOR_peak_42579 chr5 148853997 148854105 + 7.81140 NA Intergenic Intergenic 43842 NR_029686 406937 NR_029686 miRBase:MI0000461 MIR145 MIRN145|miR-145|miRNA145 microRNA 145 ncRNA 13-PTNLD9-TUMOR_peak_28641 chr2 143632015 143632246 + 7.81140 NA Intergenic MamGypLTR1b|LTR|Gypsy -3065 NM_003937 8942 Hs.470126 NM_003937 HPRD:08940 KYNU - kynureninase protein-coding 13-PTNLD9-TUMOR_peak_21387 chr17 47337942 47338259 + 7.81140 NA Intergenic Intergenic 12495 NR_034161 124871 Hs.446890 NM_001007529 HPRD:16950 FLJ40194 - uncharacterized FLJ40194 ncRNA 13-PTNLD9-TUMOR_peak_28082 chr2 112641726 112642098 + 7.81140 NA promoter-TSS (NM_022662) promoter-TSS (NM_022662) -171 NM_022662 64682 Hs.436527 NM_022662 HPRD:09769 ANAPC1 APC1|MCPR|TSG24 anaphase promoting complex subunit 1 protein-coding 13-PTNLD9-TUMOR_peak_2504 chr1 94135771 94135957 + 7.81140 NA intron (NM_001261408, intron 4 of 13) intron (NM_001261408, intron 4 of 13) 11062 NM_001261409 8412 Hs.36958 NM_003567 HPRD:05268 BCAR3 NSP2|SH2D3B breast cancer anti-estrogen resistance 3 protein-coding 13-PTNLD9-TUMOR_peak_54904 chr9 132515225 132515427 + 7.81140 NA promoter-TSS (NM_004878) promoter-TSS (NM_004878) 18 NM_004878 9536 Hs.146688 NM_004878 HPRD:05528 PTGES MGST-IV|MGST1-L1|MGST1L1|MPGES|PGES|PIG12|PP102|PP1294|TP53I12|mPGES-1 prostaglandin E synthase protein-coding 13-PTNLD9-TUMOR_peak_50332 chr8 23082486 23082773 + 7.81140 NA promoter-TSS (NM_003844) promoter-TSS (NM_003844) 51 NM_003844 8797 Hs.213467 NM_003844 TNFRSF10A APO2|CD261|DR4|TRAILR-1|TRAILR1 tumor necrosis factor receptor superfamily, member 10a protein-coding 13-PTNLD9-TUMOR_peak_43273 chr5 178322873 178323254 + 7.81140 NA intron (NM_030613, intron 1 of 4) CpG 147 NM_030613 80108 Hs.654533 NM_030613 HPRD:08639 ZFP2 ZNF751 ZFP2 zinc finger protein protein-coding 13-PTNLD9-TUMOR_peak_16912 chr15 30554424 30554523 + 7.81140 NA Intergenic Intergenic 66234 NR_026771 26082 Hs.652128 NR_026771 ENSG00000225930 DKFZP434L187 - uncharacterized LOC26082 ncRNA 13-PTNLD9-TUMOR_peak_19602 chr16 67757198 67757408 + 7.81140 NA 3' UTR (NM_020850, exon 14 of 14) 3' UTR (NM_020850, exon 14 of 14) -4030 NR_027398 81577 Hs.307084 NM_030819 HPRD:14419 GFOD2 - glucose-fructose oxidoreductase domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_27852 chr2 101923387 101923522 + 7.81140 NA intron (NM_173647, intron 1 of 6) L3|LINE|CR1 1724 NM_173647 284996 Hs.142074 NM_173647 HPRD:11513 RNF149 DNAPTP2 ring finger protein 149 protein-coding 13-PTNLD9-TUMOR_peak_24336 chr19 17650494 17650668 + 7.81140 NA intron (NM_001098524, intron 9 of 15) CpG-13228 -15930 NM_024656 79709 Hs.418795 NM_024656 HPRD:07986 COLGALT1 GLT25D1 collagen beta(1-O)galactosyltransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_43156 chr5 175827552 175827663 + 7.81140 NA intron (NM_007097, intron 2 of 5) intron (NM_007097, intron 2 of 5) 11823 NM_138820 192286 Hs.534575 NM_138820 HPRD:14483 HIGD2A RCF1b HIG1 hypoxia inducible domain family, member 2A protein-coding 13-PTNLD9-TUMOR_peak_40936 chr5 56299033 56299185 + 7.81140 NA Intergenic Intergenic -51152 NM_152622 166968 Hs.657594 NM_152622 HPRD:08199 MIER3 - mesoderm induction early response 1, family member 3 protein-coding 13-PTNLD9-TUMOR_peak_15252 chr14 21150569 21150708 + 7.81128 NA Intergenic MER1B|DNA|hAT-Charlie -1698 NM_001145 283 Hs.283749 NM_001145 HPRD:00105 ANG ALS9|HEL168|RAA1|RNASE4|RNASE5 angiogenin, ribonuclease, RNase A family, 5 protein-coding 13-PTNLD9-TUMOR_peak_1870 chr1 55353175 55353317 + 7.80804 NA promoter-TSS (NM_014762) promoter-TSS (NM_014762) -325 NM_014762 1718 Hs.498727 NM_014762 HPRD:05916 DHCR24 DCE|Nbla03646|SELADIN1|seladin-1 24-dehydrocholesterol reductase protein-coding 13-PTNLD9-TUMOR_peak_50003 chr8 7294668 7294889 + 7.80804 NA Intergenic Intergenic -6908 NM_018661 55894 Hs.283082 NM_018661 DEFB103B BD-3|DEFB-3|DEFB103|DEFB3|HBD-3|HBD3|HBP-3|HBP3 defensin, beta 103B protein-coding 13-PTNLD9-TUMOR_peak_33093 chr22 30684105 30684282 + 7.80706 NA intron (NM_001037666, intron 2 of 8) intron (NM_001037666, intron 2 of 8) 1423 NM_001037666 652968 Hs.444950 NM_001037666 ENSG00000239282 GATSL3 - GATS protein-like 3 protein-coding 13-PTNLD9-TUMOR_peak_26466 chr2 29340879 29341058 + 7.80706 NA intron (NM_024692, intron 1 of 15) intron (NM_024692, intron 1 of 15) 2676 NM_024692 79745 Hs.122927 NM_024692 HPRD:08634 CLIP4 RSNL2 CAP-GLY domain containing linker protein family, member 4 protein-coding 13-PTNLD9-TUMOR_peak_9012 chr11 9634805 9634958 + 7.80706 NA Intergenic Intergenic 38647 NM_001143976 7465 Hs.249441 NM_003390 HPRD:01907 WEE1 WEE1A|WEE1hu WEE1 G2 checkpoint kinase protein-coding 13-PTNLD9-TUMOR_peak_39356 chr4 132888691 132889021 + 7.80706 NA Intergenic Intergenic -1181614 NM_032961 57575 Hs.192859 NM_020815 PCDH10 OL-PCDH|PCDH19 protocadherin 10 protein-coding 13-PTNLD9-TUMOR_peak_37986 chr4 10459016 10459123 + 7.80706 NA promoter-TSS (NM_053042) promoter-TSS (NM_053042) -37 NM_053042 85460 Hs.455089 NM_053042 HPRD:13889 ZNF518B - zinc finger protein 518B protein-coding 13-PTNLD9-TUMOR_peak_43037 chr5 172205322 172205439 + 7.80364 NA Intergenic Intergenic -7177 NM_004417 1843 Hs.171695 NM_004417 HPRD:02835 DUSP1 CL100|HVH1|MKP-1|MKP1|PTPN10 dual specificity phosphatase 1 protein-coding 13-PTNLD9-TUMOR_peak_21009 chr17 38470970 38471100 + 7.80364 NA intron (NM_000964, intron 1 of 8) intron (NM_000964, intron 1 of 8) -3438 NM_001145302 5914 Hs.654583 NM_000964 RARA NR1B1|RAR retinoic acid receptor, alpha protein-coding 13-PTNLD9-TUMOR_peak_8204 chr10 103893754 103893890 + 7.80364 NA intron (NM_001288728, intron 1 of 13) intron (NM_001288728, intron 1 of 13) 1071 NM_001288728 23082 Hs.533551 NM_015062 HPRD:15173 PPRC1 PRC peroxisome proliferator-activated receptor gamma, coactivator-related 1 protein-coding 13-PTNLD9-TUMOR_peak_18479 chr16 10275542 10275730 + 7.79798 NA intron (NM_000833, intron 2 of 13) CpG 288 NM_001134408 2903 Hs.411472 NM_000833 HPRD:00698 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate receptor, ionotropic, N-methyl D-aspartate 2A protein-coding 13-PTNLD9-TUMOR_peak_47770 chr7 66565963 66566292 + 7.79798 NA intron (NM_018264, intron 12 of 15) LTR19B|LTR|ERV1 13257 NR_039794 100616331 NR_039794 miRBase:MI0017278 MIR4650-2 - microRNA 4650-2 ncRNA 13-PTNLD9-TUMOR_peak_25682 chr19 55863505 55863741 + 7.79798 NA intron (NM_144613, intron 4 of 4) intron (NM_144613, intron 4 of 4) 2559 NM_144613 125965 Hs.550544 NM_144613 HPRD:13088 COX6B2 COXVIB2|CT59 cytochrome c oxidase subunit VIb polypeptide 2 (testis) protein-coding 13-PTNLD9-TUMOR_peak_22069 chr17 74523852 74524105 + 7.79798 NA 3' UTR (NM_134268, exon 4 of 4) 3' UTR (NM_134268, exon 4 of 4) 310 NR_033357 768206 Hs.634380 NM_001077620 PRCD RP36 progressive rod-cone degeneration protein-coding 13-PTNLD9-TUMOR_peak_25305 chr19 49057213 49057420 + 7.79798 NA intron (NM_177973, intron 1 of 6) MIRb|SINE|MIR 1887 NM_177973 6820 Hs.369331 NM_004605 HPRD:04991 SULT2B1 HSST2 sulfotransferase family, cytosolic, 2B, member 1 protein-coding 13-PTNLD9-TUMOR_peak_2351 chr1 86968500 86968648 + 7.79798 NA Intergenic Intergenic 34048 NM_001285 1179 Hs.194659 NM_001285 HPRD:04880 CLCA1 CACC|CACC1|CLCRG1|CaCC-1|GOB5|hCLCA1|hCaCC-1 chloride channel accessory 1 protein-coding 13-PTNLD9-TUMOR_peak_44218 chr6 26206223 26206420 + 7.78930 NA Intergenic Intergenic 1448 NM_003545 8367 Hs.662174 NM_003545 HIST1H4E H4/j|H4FJ histone cluster 1, H4e protein-coding 13-PTNLD9-TUMOR_peak_19007 chr16 30538301 30538586 + 7.78800 NA promoter-TSS (NM_024671) promoter-TSS (NM_024671) -533 NM_024671 79724 Hs.85658 NM_024671 HPRD:08671 ZNF768 - zinc finger protein 768 protein-coding 13-PTNLD9-TUMOR_peak_22111 chr17 75283841 75283990 + 7.78800 NA promoter-TSS (NM_001113492) promoter-TSS (NM_001113492) -58 NM_001113492 10801 Hs.440932 NM_006640 HPRD:10360 SEPT9 AF17q25|MSF|MSF1|NAPB|PNUTL4|SINT1|SeptD1 septin 9 protein-coding 13-PTNLD9-TUMOR_peak_49138 chr7 131581834 131582006 + 7.78800 NA Intergenic Intergenic -13059 NR_110836 101928782 Hs.571369 NR_110836 ENSG00000224865 LOC101928782 - uncharacterized LOC101928782 ncRNA 13-PTNLD9-TUMOR_peak_45143 chr6 44205772 44205873 + 7.78800 NA Intergenic CpG -8081 NM_001271970 3326 Hs.509736 NM_007355 HPRD:06763 HSP90AB1 D6S182|HSP84|HSP90B|HSPC2|HSPCB heat shock protein 90kDa alpha (cytosolic), class B member 1 protein-coding 13-PTNLD9-TUMOR_peak_20414 chr17 7748134 7748320 + 7.78458 NA 5' UTR (NM_001080424, exon 2 of 22) 5' UTR (NM_001080424, exon 2 of 22) 4992 NM_001080424 23135 Hs.223678 NM_001080424 ENSG00000132510 KDM6B JMJD3 lysine (K)-specific demethylase 6B protein-coding 13-PTNLD9-TUMOR_peak_27729 chr2 97202372 97202527 + 7.78458 NA promoter-TSS (NM_212481) promoter-TSS (NM_212481) -15 NM_212481 10865 Hs.920 NM_006673 HPRD:12481 ARID5A MRF-1|MRF1|RP11-363D14 AT rich interactive domain 5A (MRF1-like) protein-coding 13-PTNLD9-TUMOR_peak_55965 chrX 61686692 61686828 + 7.78402 NA Intergenic ALR/Alpha|Satellite|centr 884458 NM_001012968 139886 Hs.612782 NM_001012968 HPRD:12556 SPIN4 - spindlin family, member 4 protein-coding 13-PTNLD9-TUMOR_peak_10763 chr11 79303589 79303785 + 7.77935 NA Intergenic Intergenic -151992 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ODZ4|TNM4|Ten-M4 teneurin transmembrane protein 4 protein-coding 13-PTNLD9-TUMOR_peak_41591 chr5 97174048 97174198 + 7.77935 NA Intergenic Intergenic 333723 NR_105028 102546227 Hs.582516 NR_105028 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 13-PTNLD9-TUMOR_peak_22136 chr17 76036887 76037376 + 7.77935 NA intron (NM_018996, intron 3 of 20) CpG 36813 NM_001142640 57690 Hs.569831 NM_018996 HPRD:10026 TNRC6C - trinucleotide repeat containing 6C protein-coding 13-PTNLD9-TUMOR_peak_29066 chr2 172260942 172261085 + 7.77935 NA intron (NM_024770, intron 1 of 9) MER44D|DNA|TcMar-Tigger -29748 NM_025000 80067 Hs.659439 NM_025000 HPRD:08579 DCAF17 C2orf37 DDB1 and CUL4 associated factor 17 protein-coding 13-PTNLD9-TUMOR_peak_39726 chr4 156874995 156875108 + 7.77935 NA promoter-TSS (NM_001334) promoter-TSS (NM_001334) -3 NM_001334 1519 Hs.75262 NM_001334 HPRD:02772 CTSO CTSO1 cathepsin O protein-coding 13-PTNLD9-TUMOR_peak_1956 chr1 59481524 59481678 + 7.77935 NA Intergenic Intergenic -4547 NR_110626 101926925 NR_110626 LINC01358 - long intergenic non-protein coding RNA 1358 ncRNA 13-PTNLD9-TUMOR_peak_17545 chr15 69886735 69887012 + 7.77935 NA Intergenic Intergenic 32814 NR_026979 145837 Hs.410126 NR_026979 LOC145837 - uncharacterized LOC145837 ncRNA 13-PTNLD9-TUMOR_peak_27001 chr2 60575012 60575194 + 7.77935 NA Intergenic LTR88b|LTR|Gypsy? 39477 NR_039631 100616473 NR_039631 miRBase:MI0016772 MIR4432 - microRNA 4432 ncRNA 13-PTNLD9-TUMOR_peak_48805 chr7 107947659 107947802 + 7.77935 NA intron (NM_005010, intron 3 of 27) intron (NM_005010, intron 3 of 27) -67116 NM_001037132 4897 Hs.21422 NM_005010 HPRD:07207 NRCAM - neuronal cell adhesion molecule protein-coding 13-PTNLD9-TUMOR_peak_51433 chr8 102021969 102022160 + 7.77935 NA Intergenic MLT1M|LTR|ERVL-MaLR -42218 NR_033962 441374 Hs.652045 NR_033962 ENSG00000248599 FLJ42969 - uncharacterized LOC441374 ncRNA 13-PTNLD9-TUMOR_peak_43593 chr6 4600236 4600488 + 7.77935 NA Intergenic L1MB3|LINE|L1 -10437 NR_122107 497048 Hs.591355 NM_001011540 KU-MEL-3 - uncharacterized LOC497048 ncRNA 13-PTNLD9-TUMOR_peak_50523 chr8 29994867 29995057 + 7.77935 NA exon (NM_001128208, exon 4 of 4) exon (NM_001128208, exon 4 of 4) 7238 NM_001100916 619373 Hs.627194 NM_001100916 ENSG00000177669 MBOAT4 GOAT|OACT4 membrane bound O-acyltransferase domain containing 4 protein-coding 13-PTNLD9-TUMOR_peak_15665 chr14 48843351 48843475 + 7.77935 NA Intergenic Intergenic -579196 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 13-PTNLD9-TUMOR_peak_46302 chr6 151041962 151042168 + 7.77935 NA intron (NM_001029884, intron 2 of 16) intron (NM_001029884, intron 2 of 16) 121066 NM_001029884 57480 Hs.189781 NM_001029884 ENSG00000120278 PLEKHG1 ARHGEF41 pleckstrin homology domain containing, family G (with RhoGef domain) member 1 protein-coding 13-PTNLD9-TUMOR_peak_10369 chr11 67427034 67427140 + 7.77935 NA Intergenic LTR13|LTR|ERVK -8957 NM_080658 91703 Hs.126265 NM_080658 HPRD:12422 ACY3 ACY-3|HCBP1 aspartoacylase (aminocyclase) 3 protein-coding 13-PTNLD9-TUMOR_peak_34994 chr3 73651486 73651581 + 7.77935 NA exon (NM_015009, exon 3 of 10) exon (NM_015009, exon 3 of 10) -21186 NR_046681 101927249 Hs.733334 NR_046681 PDZRN3-AS1 - PDZRN3 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_29018 chr2 169708375 169708524 + 7.77935 NA intron (NM_052946, intron 9 of 14) MLT1F2|LTR|ERVL-MaLR 38495 NM_020675 57405 Hs.421956 NM_020675 HPRD:15465 SPC25 SPBC25|hSpc25 SPC25, NDC80 kinetochore complex component protein-coding 13-PTNLD9-TUMOR_peak_44073 chr6 21076369 21076568 + 7.77935 NA intron (NM_017774, intron 12 of 15) L3|LINE|CR1 435655 NR_103790 100874531 Hs.112750 NR_103790 LINC00581 - long intergenic non-protein coding RNA 581 ncRNA 13-PTNLD9-TUMOR_peak_9607 chr11 42497678 42497988 + 7.77935 NA Intergenic MLT1K|LTR|ERVL-MaLR -222593 NR_038309 100507205 Hs.99310 NR_038309 LOC100507205 - uncharacterized LOC100507205 ncRNA 13-PTNLD9-TUMOR_peak_44903 chr6 38723157 38723296 + 7.77935 NA intron (NM_001206927, intron 9 of 92) intron (NM_001206927, intron 9 of 92) 40109 NM_001206927 1769 Hs.520106 NM_001371 HPRD:04515 DNAH8 ATPase|hdhc9 dynein, axonemal, heavy chain 8 protein-coding 13-PTNLD9-TUMOR_peak_53186 chr9 37576166 37576411 + 7.77935 NA promoter-TSS (NM_012166) promoter-TSS (NM_012166) -38 NM_012166 26267 Hs.709527 NM_012166 ENSG00000147912 FBXO10 FBX10|PRMT11 F-box protein 10 protein-coding 13-PTNLD9-TUMOR_peak_13492 chr12 94656266 94656435 + 7.77935 NA promoter-TSS (NR_037687) promoter-TSS (NR_037687) 53 NR_037687 10154 Hs.584845 NM_005761 HPRD:05036 PLXNC1 CD232|PLXN-C1|VESPR plexin C1 protein-coding 13-PTNLD9-TUMOR_peak_47579 chr7 56605757 56605973 + 7.77935 NA promoter-TSS (NR_108099) promoter-TSS (NR_108099) -42 NR_108099 101928401 Hs.385614 NR_108099 ENSG00000233288 LOC101928401 - uncharacterized LOC101928401 ncRNA 13-PTNLD9-TUMOR_peak_1749 chr1 51339176 51339342 + 7.77935 NA intron (NM_007051, intron 1 of 18) MER66C|LTR|ERV1 86677 NM_007051 11124 Hs.530402 NM_007051 HPRD:05124 FAF1 HFAF1s|UBXD12|UBXN3A|hFAF1 Fas (TNFRSF6) associated factor 1 protein-coding 13-PTNLD9-TUMOR_peak_52327 chr8 141715017 141715148 + 7.77935 NA intron (NM_153831, intron 24 of 31) intron (NM_153831, intron 24 of 31) -69436 NM_001164623 27161 Hs.743313 NM_012154 HPRD:06943 AGO2 EIF2C2|Q10 argonaute RISC catalytic component 2 protein-coding 13-PTNLD9-TUMOR_peak_16538 chr14 98345142 98345260 + 7.77935 NA Intergenic Intergenic 99260 NR_015430 388011 Hs.651477 NR_015430 ENSG00000246223 C14orf64 - chromosome 14 open reading frame 64 ncRNA 13-PTNLD9-TUMOR_peak_26810 chr2 46542634 46542832 + 7.77935 NA intron (NM_001430, intron 1 of 15) intron (NM_001430, intron 1 of 15) 18192 NM_001430 2034 Hs.468410 NM_001430 HPRD:06787 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 13-PTNLD9-TUMOR_peak_4743 chr1 184774851 184774948 + 7.77935 NA intron (NM_052966, intron 11 of 13) intron (NM_052966, intron 11 of 13) -50858 NM_025191 80267 Hs.523811 NM_025191 HPRD:10724 EDEM3 C1orf22 ER degradation enhancer, mannosidase alpha-like 3 protein-coding 13-PTNLD9-TUMOR_peak_6096 chr1 243602263 243602452 + 7.77935 NA intron (NM_006642, intron 16 of 17) LTR16D|LTR|ERVL 92879 NR_039824 100616343 NR_039824 MIR4677 - microRNA 4677 ncRNA 13-PTNLD9-TUMOR_peak_1326 chr1 41286885 41287027 + 7.77935 NA intron (NM_004700, intron 7 of 13) intron (NM_004700, intron 7 of 13) 37272 NM_004700 9132 Hs.473058 NM_004700 HPRD:04641 KCNQ4 DFNA2|DFNA2A|KV7.4 potassium voltage-gated channel, KQT-like subfamily, member 4 protein-coding 13-PTNLD9-TUMOR_peak_35259 chr3 107560892 107560996 + 7.77935 NA non-coding (NR_015414, exon 11 of 11) non-coding (NR_015414, exon 11 of 11) 35971 NR_024276 151658 Hs.159043 NR_015414 ENSG00000241469 LINC00635 - long intergenic non-protein coding RNA 635 ncRNA 13-PTNLD9-TUMOR_peak_8293 chr10 106654078 106654205 + 7.77935 NA intron (NM_014978, intron 2 of 26) intron (NM_014978, intron 2 of 26) -228167 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_42776 chr5 156755573 156755671 + 7.77935 NA intron (NM_001037333, intron 19 of 30) L2b|LINE|L2 17107 NM_001001343 408263 Hs.437066 NM_001001343 HPRD:17524 FNDC9 C5orf40 fibronectin type III domain containing 9 protein-coding 13-PTNLD9-TUMOR_peak_50659 chr8 38728748 38728870 + 7.77935 NA Intergenic Intergenic -29944 NM_021623 59339 Hs.369123 NM_021623 ENSG00000169499 PLEKHA2 TAPP2 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 2 protein-coding 13-PTNLD9-TUMOR_peak_37760 chr4 5958385 5958586 + 7.77935 NA Intergenic Intergenic -33430 NR_039608 100616201 NR_039608 miRBase:MI0016749 MIR378D1 - microRNA 378d-1 ncRNA 13-PTNLD9-TUMOR_peak_41287 chr5 73872921 73873113 + 7.77935 NA Intergenic Intergenic -62831 NM_001292004 3074 Hs.69293 NM_000521 HPRD:06043 HEXB ENC-1AS|HEL-248 hexosaminidase B (beta polypeptide) protein-coding 13-PTNLD9-TUMOR_peak_25022 chr19 41506189 41506432 + 7.77935 NA intron (NM_000767, intron 1 of 8) L2b|LINE|L2 9106 NM_000767 1555 Hs.1360 NM_000767 HPRD:00477 CYP2B6 CPB6|CYP2B|CYP2B7|CYP2B7P|CYPIIB6|EFVM|IIB1|P450 cytochrome P450, family 2, subfamily B, polypeptide 6 protein-coding 13-PTNLD9-TUMOR_peak_44659 chr6 33172727 33172862 + 7.77929 NA TTS (NM_006979) TTS (NM_006979) 380 NM_014234 7923 Hs.415058 NM_014234 HPRD:03248 HSD17B8 D6S2245E|FABG|FABGL|H2-KE6|HKE6|KE6|RING2|SDR30C1|dJ1033B10.9 hydroxysteroid (17-beta) dehydrogenase 8 protein-coding 13-PTNLD9-TUMOR_peak_5765 chr1 229404293 229404570 + 7.77794 NA Intergenic Intergenic -2378 NM_001271998 5867 Hs.296169 NM_004578 HPRD:01541 RAB4A HRES-1|HRES-1/RAB4|HRES1|RAB4 RAB4A, member RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_7463 chr10 61660214 61660329 + 7.77794 NA intron (NM_005436, intron 1 of 8) intron (NM_005436, intron 1 of 8) 6143 NM_005436 8030 Hs.591360 NM_005436 HPRD:09064 CCDC6 D10S170|H4|PTC|TPC|TST1 coiled-coil domain containing 6 protein-coding 13-PTNLD9-TUMOR_peak_24848 chr19 37803505 37803861 + 7.77794 NA Intergenic CpG -21897 NM_181786 284459 Hs.657027 NM_181786 HPRD:01314 HKR1 ZNF875 HKR1, GLI-Kruppel zinc finger family member protein-coding 13-PTNLD9-TUMOR_peak_12061 chr12 8085958 8086060 + 7.77794 NA intron (NM_006931, intron 2 of 9) intron (NM_006931, intron 2 of 9) 2883 NM_006931 6515 Hs.419240 NM_006931 HPRD:00686 SLC2A3 GLUT3 solute carrier family 2 (facilitated glucose transporter), member 3 protein-coding 13-PTNLD9-TUMOR_peak_27534 chr2 88316248 88316410 + 7.77794 NA Intergenic CpG -31020 NM_001024457 400966 Hs.728970 NM_001024457 ENSG00000187627 RGPD1 RGP1|RGPD2|RanBP2L2 RANBP2-like and GRIP domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_3641 chr1 151801504 151801745 + 7.77794 NA intron (NM_005060, intron 2 of 10) intron (NM_005060, intron 2 of 10) 2724 NM_005060 6097 Hs.256022 NM_005060 HPRD:04250 RORC NR1F3|RORG|RZR-GAMMA|RZRG|TOR RAR-related orphan receptor C protein-coding 13-PTNLD9-TUMOR_peak_1344 chr1 41575700 41575865 + 7.77794 NA intron (NM_001172222, intron 2 of 8) intron (NM_001172222, intron 2 of 8) 49823 NM_001172222 22955 Hs.571874 NM_012236 HPRD:11540 SCMH1 Scml3 sex comb on midleg homolog 1 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_16696 chr14 105934980 105935176 + 7.77794 NA intron (NM_004689, intron 18 of 20) intron (NM_004689, intron 18 of 20) -4197 NR_073082 1397 Hs.534309 NM_001312 HPRD:03113 CRIP2 CRIP|CRP2|ESP1 cysteine-rich protein 2 protein-coding 13-PTNLD9-TUMOR_peak_42514 chr5 146783208 146783336 + 7.77709 NA intron (NM_001197294, intron 8 of 13) intron (NM_001197294, intron 8 of 13) 49988 NM_001387 1809 Hs.519659 NM_001387 HPRD:03104 DPYSL3 CRMP-4|CRMP4|DRP-3|DRP3|LCRMP|ULIP|ULIP-1 dihydropyrimidinase-like 3 protein-coding 13-PTNLD9-TUMOR_peak_30698 chr20 29653239 29653505 + 7.77709 NA Intergenic HERVL74-int|LTR|ERVL -15234 NR_045115 140678 Hs.653099 NR_045115 MLLT10P1 MLLT10L|bA348I14.3 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_34398 chr3 45053726 45053845 + 7.77640 NA TTS (NM_015004) TTS (NM_015004) -13974 NM_003278 7123 Hs.476092 NM_003278 HPRD:01759 CLEC3B TN|TNA C-type lectin domain family 3, member B protein-coding 13-PTNLD9-TUMOR_peak_21158 chr17 42245927 42246021 + 7.77640 NA Intergenic Intergenic -2100 NM_080863 92591 Hs.534517 NM_080863 HPRD:10670 ASB16 - ankyrin repeat and SOCS box containing 16 protein-coding 13-PTNLD9-TUMOR_peak_48506 chr7 100005343 100005452 + 7.77640 NA intron (NM_001258008, intron 10 of 15) intron (NM_001258008, intron 10 of 15) -21016 NM_001194992 56257 Hs.178011 NM_019606 HPRD:07889 MEPCE BCDIN3 methylphosphate capping enzyme protein-coding 13-PTNLD9-TUMOR_peak_34529 chr3 49070234 49070337 + 7.77640 NA intron (NM_198880, intron 7 of 9) intron (NM_198880, intron 7 of 9) -3410 NM_000884 3615 Hs.654400 NM_000884 HPRD:00895 IMPDH2 IMPD2|IMPDH-II IMP (inosine 5'-monophosphate) dehydrogenase 2 protein-coding 13-PTNLD9-TUMOR_peak_41399 chr5 79350616 79350773 + 7.77640 NA intron (NM_003248, intron 2 of 21) intron (NM_003248, intron 2 of 21) 19524 NM_003248 7060 Hs.211426 NM_003248 HPRD:02836 THBS4 TSP4 thrombospondin 4 protein-coding 13-PTNLD9-TUMOR_peak_9288 chr11 19957149 19957347 + 7.77640 NA intron (NM_182964, intron 7 of 37) intron (NM_182964, intron 7 of 37) -86854 NM_001111019 89797 Hs.64341 NM_145117 HPRD:07385 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 13-PTNLD9-TUMOR_peak_28121 chr2 113826694 113826835 + 7.77640 NA intron (NM_173161, intron 1 of 4) intron (NM_173161, intron 1 of 4) 1217 NM_173161 84639 Hs.306974 NM_032556 HPRD:17144 IL1F10 FIL1-theta|IL-1HY2|IL-38|IL1-theta|IL1HY2 interleukin 1 family, member 10 (theta) protein-coding 13-PTNLD9-TUMOR_peak_15506 chr14 34386553 34386717 + 7.77640 NA Intergenic Intergenic 33649 NM_022073 112399 Hs.135507 NM_022073 HPRD:06972 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia-inducible factor 3 protein-coding 13-PTNLD9-TUMOR_peak_22661 chr18 13382419 13382554 + 7.77640 NA intron (NM_181482, intron 2 of 5) intron (NM_181482, intron 2 of 5) 45047 NR_040031 100288122 Hs.646264 NR_040031 ENSG00000267690 LDLRAD4-AS1 - LDLRAD4 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_26096 chr2 10548116 10548253 + 7.76853 NA intron (NM_001258357, intron 2 of 4) L2c|LINE|L2 38791 NR_028374 100302743 Hs.730525 NR_028374 ENSG00000206633 SNORA80B ACA67B small nucleolar RNA, H/ACA box 80B snoRNA 13-PTNLD9-TUMOR_peak_52428 chr8 144451523 144451692 + 7.76853 NA promoter-TSS (NR_026785) promoter-TSS (NR_026785) 582 NM_052924 114822 Hs.521912 NM_052924 HPRD:17973 RHPN1 ODF5|RHOPHILIN|RHPN rhophilin, Rho GTPase binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_20889 chr17 34136041 34136169 + 7.76629 NA promoter-TSS (NM_139215) promoter-TSS (NM_139215) -354 NM_003487 8148 Hs.402752 NM_003487 HPRD:09031 TAF15 Npl3|RBP56|TAF2N|TAFII68 TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa protein-coding 13-PTNLD9-TUMOR_peak_8874 chr11 3862471 3862768 + 7.76629 NA promoter-TSS (NM_001665) promoter-TSS (NM_001665) -406 NM_001665 391 Hs.501728 NM_001665 HPRD:01537 RHOG ARHG ras homolog family member G protein-coding 13-PTNLD9-TUMOR_peak_52342 chr8 142185116 142185251 + 7.76629 NA intron (NM_014957, intron 13 of 22) intron (NM_014957, intron 13 of 22) 46463 NM_014957 22898 Hs.18166 NM_014957 HPRD:11114 DENND3 - DENN/MADD domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_29826 chr2 219157054 219157393 + 7.76629 NA promoter-TSS (NM_022152) promoter-TSS (NM_022152) 57 NM_022152 64114 Hs.591605 NM_022152 HPRD:17884 TMBIM1 LFG3|MST100|MSTP100|RECS1 transmembrane BAX inhibitor motif containing 1 protein-coding 13-PTNLD9-TUMOR_peak_52227 chr8 136271379 136271501 + 7.76629 NA intron (NR_120396, intron 1 of 4) L1PA2|LINE|L1 25066 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LOC286094 - uncharacterized LOC286094 ncRNA 13-PTNLD9-TUMOR_peak_13949 chr12 116963352 116963454 + 7.76629 NA Intergenic Intergenic -7824 NR_027345 100287569 Hs.441601 NM_207436 ENSG00000196668 LINC00173 NCRNA00173 long intergenic non-protein coding RNA 173 ncRNA 13-PTNLD9-TUMOR_peak_54896 chr9 132246298 132246414 + 7.76407 NA Intergenic Intergenic -4583 NR_038955 100506190 Hs.529860 NR_038955 LINC00963 - long intergenic non-protein coding RNA 963 ncRNA 13-PTNLD9-TUMOR_peak_24449 chr19 19305333 19305581 + 7.76407 NA intron (NM_001278728, intron 2 of 7) AluJo|SINE|Alu 1882 NM_001278728 8625 Hs.153629 NM_003721 HPRD:04435 RFXANK ANKRA1|BLS|F14150_1|RFX-B regulatory factor X-associated ankyrin-containing protein protein-coding 13-PTNLD9-TUMOR_peak_3481 chr1 149379192 149379373 + 7.76407 NA TTS (NR_027484) TTS (NR_027484) 9988 NR_027484 100132417 Hs.77424 NM_001128589 FCGR1C CD64c|FCRIC|IGFR1|IGFRC Fc fragment of IgG, high affinity Ic, receptor (CD64), pseudogene pseudo 13-PTNLD9-TUMOR_peak_4741 chr1 184723650 184723845 + 7.75936 NA exon (NM_025191, exon 1 of 20) exon (NM_025191, exon 1 of 20) 294 NM_025191 80267 Hs.523811 NM_025191 HPRD:10724 EDEM3 C1orf22 ER degradation enhancer, mannosidase alpha-like 3 protein-coding 13-PTNLD9-TUMOR_peak_22325 chr17 80241376 80241483 + 7.74994 NA Intergenic Intergenic -9811 NR_110578 1453 Hs.631725 NM_001893 HPRD:02920 CSNK1D ASPS|CKIdelta|FASPS2|HCKID casein kinase 1, delta protein-coding 13-PTNLD9-TUMOR_peak_13276 chr12 69753405 69753657 + 7.74994 NA promoter-TSS (NM_006530) promoter-TSS (NM_006530) 41 NM_006530 8089 Hs.4029 NM_006530 HPRD:03666 YEATS4 4930573H17Rik|B230215M10Rik|GAS41|NUBI-1|YAF9 YEATS domain containing 4 protein-coding 13-PTNLD9-TUMOR_peak_41075 chr5 65503954 65504256 + 7.74865 NA Intergenic Intergenic 63442 NM_139168 140890 Hs.49367 NM_139168 HPRD:18043 SREK1 SFRS12|SRrp508|SRrp86 splicing regulatory glutamine/lysine-rich protein 1 protein-coding 13-PTNLD9-TUMOR_peak_26413 chr2 27940074 27940213 + 7.74865 NA Intergenic Intergenic -53436 NM_001282731 9913 Hs.6232 NM_014860 HPRD:18115 SUPT7L SPT7L|STAF65|STAF65(gamma)|STAF65G|SUPT7H suppressor of Ty 7 (S. cerevisiae)-like protein-coding 13-PTNLD9-TUMOR_peak_31392 chr20 48554246 48554442 + 7.74865 NA intron (NM_018683, intron 1 of 5) intron (NM_018683, intron 1 of 5) 1430 NM_018683 55905 Hs.144949 NM_018683 HPRD:10329 RNF114 PSORS12|ZNF313 ring finger protein 114 protein-coding 13-PTNLD9-TUMOR_peak_50545 chr8 30661928 30662296 + 7.74018 NA intron (NM_001009552, intron 1 of 6) MER77B|LTR|ERVL 8240 NM_001009552 5516 Hs.491440 NM_004156 HPRD:01487 PPP2CB PP2Abeta|PP2CB protein phosphatase 2, catalytic subunit, beta isozyme protein-coding 13-PTNLD9-TUMOR_peak_29867 chr2 220159621 220159742 + 7.74018 NA promoter-TSS (NR_029688) promoter-TSS (NR_029688) -759 NR_029688 406944 NR_029688 MIR153-1 MIRN153-1 microRNA 153-1 ncRNA 13-PTNLD9-TUMOR_peak_28955 chr2 165035700 165035838 + 7.74018 NA Intergenic Intergenic 442591 NM_004490 2888 Hs.411881 NM_004490 HPRD:03313 GRB14 - growth factor receptor-bound protein 14 protein-coding 13-PTNLD9-TUMOR_peak_40902 chr5 55419722 55420034 + 7.74018 NA intron (NM_024669, intron 8 of 11) intron (NM_024669, intron 8 of 11) 109308 NM_024669 79722 Hs.436214 NM_024669 HPRD:07758 ANKRD55 - ankyrin repeat domain 55 protein-coding 13-PTNLD9-TUMOR_peak_9197 chr11 16842128 16842253 + 7.74018 NA intron (NM_175058, intron 10 of 22) intron (NM_175058, intron 10 of 22) 82042 NM_014267 10944 Hs.645792 NM_014267 C11orf58 IMAGE145052|SMAP chromosome 11 open reading frame 58 protein-coding 13-PTNLD9-TUMOR_peak_21955 chr17 72940342 72940480 + 7.74018 NA intron (NM_001272005, intron 5 of 6) intron (NM_001272005, intron 5 of 6) 8514 NM_001272005 347741 Hs.454407 NM_178233 HPRD:09700 OTOP3 - otopetrin 3 protein-coding 13-PTNLD9-TUMOR_peak_15808 chr14 54718792 54719057 + 7.74018 NA Intergenic Intergenic -144749 NM_001130851 1033 Hs.84113 NM_005192 HPRD:00450 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin-dependent kinase inhibitor 3 protein-coding 13-PTNLD9-TUMOR_peak_805 chr1 27426195 27426487 + 7.74018 NA non-coding (NR_046474, exon 11 of 11) non-coding (NR_046474, exon 11 of 11) 55280 NR_046474 6548 Hs.91389 NM_003047 HPRD:00123 SLC9A1 APNH|NHE-1|NHE1|PPP1R143 solute carrier family 9, subfamily A (NHE1, cation proton antiporter 1), member 1 protein-coding 13-PTNLD9-TUMOR_peak_2338 chr1 86037685 86037842 + 7.74018 NA intron (NM_001134445, intron 1 of 6) intron (NM_001134445, intron 1 of 6) 6283 NM_001134445 23576 Hs.713411 NM_012137 HPRD:09203 DDAH1 DDAH|HEL-S-16 dimethylarginine dimethylaminohydrolase 1 protein-coding 13-PTNLD9-TUMOR_peak_43777 chr6 11381354 11381574 + 7.74018 NA intron (NR_073131, intron 1 of 9) intron (NR_073131, intron 1 of 9) 1117 NM_001142393 4739 Hs.37982 NM_006403 HPRD:11888 NEDD9 CAS-L|CAS2|CASL|CASS2|HEF1 neural precursor cell expressed, developmentally down-regulated 9 protein-coding 13-PTNLD9-TUMOR_peak_26093 chr2 10510112 10510271 + 7.74009 NA intron (NM_001258359, intron 1 of 4) intron (NM_001258359, intron 1 of 4) 1301 NM_001258359 3241 Hs.580427 NM_002149 HPRD:02564 HPCAL1 BDR1|HLP2|VILIP-3 hippocalcin-like 1 protein-coding 13-PTNLD9-TUMOR_peak_27051 chr2 63842321 63842485 + 7.74009 NA Intergenic LTR19C|LTR|ERV1 26118 NM_001199112 4190 Hs.526521 NM_005917 HPRD:01100 MDH1 HEL-S-32|MDH-s|MDHA|MGC:1375|MOR2 malate dehydrogenase 1, NAD (soluble) protein-coding 13-PTNLD9-TUMOR_peak_8332 chr10 112216550 112216719 + 7.74009 NA Intergenic Intergenic -40991 NM_004419 1847 Hs.2128 NM_004419 HPRD:04349 DUSP5 DUSP|HVH3 dual specificity phosphatase 5 protein-coding 13-PTNLD9-TUMOR_peak_30921 chr20 35213987 35214138 + 7.74009 NA intron (NM_001199535, intron 2 of 4) intron (NM_001199535, intron 2 of 4) 11105 NM_001199515 60436 Hs.632264 NM_021809 HPRD:06293 TGIF2 - TGFB-induced factor homeobox 2 protein-coding 13-PTNLD9-TUMOR_peak_20347 chr17 6347115 6347316 + 7.74009 NA promoter-TSS (NM_001195228) promoter-TSS (NM_001195228) -520 NM_001195228 54478 Hs.592116 NM_019013 HPRD:07649 FAM64A CATS|RCS1 family with sequence similarity 64, member A protein-coding 13-PTNLD9-TUMOR_peak_51814 chr8 124006711 124006878 + 7.74009 NA Intergenic Intergenic 47869 NM_024295 79139 Hs.241576 NM_024295 HPRD:12302 DERL1 DER-1|DER1 derlin 1 protein-coding 13-PTNLD9-TUMOR_peak_26163 chr2 12674763 12674998 + 7.74009 NA intron (NR_110196, intron 4 of 5) intron (NR_110196, intron 4 of 5) -182118 NR_027303 28951 Hs.467751 NM_021643 HPRD:18224 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 13-PTNLD9-TUMOR_peak_30044 chr2 234390350 234390557 + 7.74009 NA intron (NM_018218, intron 29 of 30) intron (NM_018218, intron 29 of 30) 83783 NM_018218 55230 Hs.96513 NM_018218 HPRD:07166 USP40 - ubiquitin specific peptidase 40 protein-coding 13-PTNLD9-TUMOR_peak_41424 chr5 80888200 80888295 + 7.74009 NA intron (NM_001256732, intron 4 of 16) L1PA4|LINE|L1 158825 NM_001256732 23635 Hs.102735 NM_012446 SSBP2 HSPC116|SOSS-B2 single-stranded DNA binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_50124 chr8 13051770 13051898 + 7.74009 NA intron (NM_182643, intron 5 of 17) intron (NM_182643, intron 5 of 17) -61025 NM_006094 10395 Hs.134296 NM_006094 HPRD:05035 DLC1 ARHGAP7|HP|STARD12|p122-RhoGAP DLC1 Rho GTPase activating protein protein-coding 13-PTNLD9-TUMOR_peak_1880 chr1 55453575 55453747 + 7.74009 NA intron (NM_182532, intron 2 of 2) MER2B|DNA|TcMar-Tigger 7196 NM_182532 199964 Hs.663950 NM_182532 HPRD:14121 TMEM61 - transmembrane protein 61 protein-coding 13-PTNLD9-TUMOR_peak_7308 chr10 49455847 49456044 + 7.74009 NA intron (NM_001018071, intron 3 of 28) intron (NM_001018071, intron 3 of 28) 26996 NM_001018071 143162 Hs.664786 NM_152428 HPRD:17019 FRMPD2 PDZD5C|PDZK4|PDZK5C FERM and PDZ domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_17078 chr15 40615510 40615829 + 7.74009 NA promoter-TSS (NM_001301268) promoter-TSS (NM_001301268) -588 NM_001301268 100505573 Hs.530791 NM_001301268 INAFM2 LINC00984|OGU1 InaF-motif containing 2 protein-coding 13-PTNLD9-TUMOR_peak_4042 chr1 159167874 159168004 + 7.74009 NA non-coding (NR_037870, exon 4 of 4) non-coding (NR_037870, exon 4 of 4) 4273 NR_037870 100131825 Hs.701271 NR_037870 ENSG00000225670 CADM3-AS1 - CADM3 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_5446 chr1 221404070 221404275 + 7.74009 NA Intergenic Intergenic 105466 NR_024236 400804 Hs.722626 NR_024236 HPRD:17386 C1orf140 - uncharacterized LOC400804 ncRNA 13-PTNLD9-TUMOR_peak_56511 chrX 132678221 132678486 + 7.74009 NA intron (NM_001164618, intron 7 of 7) intron (NM_001164618, intron 7 of 7) -129148 NM_001448 2239 Hs.58367 NM_001448 GPC4 K-glypican glypican 4 protein-coding 13-PTNLD9-TUMOR_peak_23358 chr18 60051929 60052130 + 7.74009 NA exon (NM_003839, exon 10 of 10) exon (NM_003839, exon 10 of 10) 59509 NM_001270949 8792 Hs.204044 NM_003839 HPRD:04609 TNFRSF11A CD265|FEO|LOH18CR1|ODFR|OFE|OPTB7|OSTS|PDB2|RANK|TRANCER tumor necrosis factor receptor superfamily, member 11a, NFKB activator protein-coding 13-PTNLD9-TUMOR_peak_15080 chr13 108867856 108867956 + 7.74009 NA promoter-TSS (NM_002312) promoter-TSS (NM_002312) -24 NM_206937 3981 Hs.166091 NM_002312 HPRD:03500 LIG4 LIG4S ligase IV, DNA, ATP-dependent protein-coding 13-PTNLD9-TUMOR_peak_21329 chr17 45982633 45982756 + 7.74009 NA intron (NR_103856, intron 2 of 2) intron (NR_103856, intron 2 of 2) 9178 NM_003110 6668 Hs.514276 NM_003110 HPRD:03481 SP2 - Sp2 transcription factor protein-coding 13-PTNLD9-TUMOR_peak_4036 chr1 159024280 159024522 + 7.74009 NA intron (NM_001206567, intron 10 of 10) intron (NM_001206567, intron 10 of 10) 22246 NM_004833 9447 Hs.733411 NM_004833 HPRD:05202 AIM2 PYHIN4 absent in melanoma 2 protein-coding 13-PTNLD9-TUMOR_peak_27950 chr2 109252925 109253029 + 7.74009 NA intron (NM_001193484, intron 1 of 9) LTR41|LTR|ERVL 15275 NM_001193484 3987 Hs.597715 NM_004987 HPRD:03978 LIMS1 PINCH|PINCH-1|PINCH1 LIM and senescent cell antigen-like domains 1 protein-coding 13-PTNLD9-TUMOR_peak_30557 chr20 19767130 19767319 + 7.74009 NA Intergenic MLT1G|LTR|ERVL-MaLR -99941 NM_001242581 54453 Hs.472270 NM_018993 HPRD:15249 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 13-PTNLD9-TUMOR_peak_8956 chr11 8272112 8272210 + 7.74009 NA intron (NM_001270428, intron 1 of 3) intron (NM_001270428, intron 1 of 3) 13264 NR_073006 4004 Hs.654426 NM_002315 HPRD:01738 LMO1 RBTN1|RHOM1|TTG1 LIM domain only 1 (rhombotin 1) protein-coding 13-PTNLD9-TUMOR_peak_38632 chr4 77510649 77510813 + 7.73956 NA intron (NM_020859, intron 2 of 10) intron (NM_020859, intron 2 of 10) 16010 NR_039654 100616299 NR_039654 MIR4450 - microRNA 4450 ncRNA 13-PTNLD9-TUMOR_peak_50103 chr8 12288437 12288541 + 7.73946 NA intron (NM_001137610, intron 3 of 7) intron (NM_001137610, intron 3 of 7) 5363 NM_001137610 653333 Hs.458413 NM_001137610 ENSG00000145002 FAM86B2 - family with sequence similarity 86, member B2 protein-coding 13-PTNLD9-TUMOR_peak_52510 chr8 145448676 145448796 + 7.73946 NA Intergenic CpG 10856 NM_016458 51236 Hs.300224 NM_016458 HPRD:17423 HGH1 BRP16|BRP16L|C8orf30A|C8orf30B|FAM203A|FAM203B HGH1 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_49320 chr7 138718603 138718749 + 7.73946 NA intron (NM_080660, intron 2 of 4) intron (NM_080660, intron 2 of 4) 2099 NM_080660 92092 Hs.512833 NM_080660 HPRD:14440 ZC3HAV1L C7orf39 zinc finger CCCH-type, antiviral 1-like protein-coding 13-PTNLD9-TUMOR_peak_23749 chr19 5690162 5690333 + 7.73946 NA promoter-TSS (NM_033643) promoter-TSS (NM_033643) -25 NM_033643 25873 Hs.408018 NM_015414 HPRD:10201 RPL36 L36 ribosomal protein L36 protein-coding 13-PTNLD9-TUMOR_peak_26051 chr2 9526879 9527040 + 7.73508 NA intron (NM_003887, intron 21 of 27) MIR3|SINE|MIR 36684 NM_004763 9270 Hs.467662 NM_004763 HPRD:06194 ITGB1BP1 ICAP-1A|ICAP-1B|ICAP-1alpha|ICAP1|ICAP1A|ICAP1B integrin beta 1 binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_31064 chr20 39619285 39619414 + 7.73508 NA Intergenic Intergenic -38113 NM_003286 7150 Hs.472737 NM_003286 HPRD:00535 TOP1 TOPI topoisomerase (DNA) I protein-coding 13-PTNLD9-TUMOR_peak_8823 chr11 2773679 2773828 + 7.73508 NA intron (NM_181798, intron 11 of 15) MLT1A0|LTR|ERVL-MaLR -52525 NR_002728 10984 Hs.604823 NR_002728 ENSG00000269821 KCNQ1OT1 KCNQ1-AS2|KCNQ10T1|KvDMR1|KvLQT1-AS|LIT1|NCRNA00012 KCNQ1 opposite strand/antisense transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_53572 chr9 72513919 72514089 + 7.73508 NA intron (NM_001010940, intron 5 of 5) intron (NM_001010940, intron 5 of 5) 78273 NM_001010940 138255 Hs.444459 NM_001010940 HPRD:17298 C9orf135 - chromosome 9 open reading frame 135 protein-coding 13-PTNLD9-TUMOR_peak_53631 chr9 75124146 75124247 + 7.73508 NA Intergenic Intergenic -12521 NM_138691 117531 Hs.670211 NM_138691 HPRD:05988 TMC1 DFNA36|DFNB11|DFNB7 transmembrane channel-like 1 protein-coding 13-PTNLD9-TUMOR_peak_11450 chr11 122211485 122211626 + 7.73508 NA Intergenic Intergenic -137785 NR_024430 399959 Hs.44098 NR_024430 ENSG00000255248 MIR100HG AGD1|lncRNA-N2 mir-100-let-7a-2 cluster host gene (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_5691 chr1 228183965 228184215 + 7.73508 NA Intergenic L1MEc|LINE|L1 -10633 NM_033131 89780 Hs.336930 NM_033131 HPRD:05897 WNT3A - wingless-type MMTV integration site family, member 3A protein-coding 13-PTNLD9-TUMOR_peak_1913 chr1 57277168 57277348 + 7.73508 NA intron (NM_001004303, intron 1 of 19) LTR38B|LTR|ERV1 8111 NM_001004303 199920 Hs.437655 NM_001004303 HPRD:14120 C1orf168 - chromosome 1 open reading frame 168 protein-coding 13-PTNLD9-TUMOR_peak_11563 chr11 126660554 126660654 + 7.73508 NA intron (NM_001301097, intron 1 of 15) intron (NM_001301097, intron 1 of 15) 134623 NR_120533 101929427 Hs.600341 NR_120532 ENSG00000254607 LOC101929427 - uncharacterized LOC101929427 ncRNA 13-PTNLD9-TUMOR_peak_1876 chr1 55400617 55400871 + 7.73508 NA Intergenic PRIMAX-int|LTR|ERV1 -45721 NM_182532 199964 Hs.663950 NM_182532 HPRD:14121 TMEM61 - transmembrane protein 61 protein-coding 13-PTNLD9-TUMOR_peak_29755 chr2 213984261 213984379 + 7.73508 NA intron (NM_001079526, intron 4 of 8) intron (NM_001079526, intron 4 of 8) 30738 NM_016260 22807 Hs.604950 NM_016260 HPRD:05872 IKZF2 ANF1A2|HELIOS|ZNF1A2|ZNFN1A2 IKAROS family zinc finger 2 (Helios) protein-coding 13-PTNLD9-TUMOR_peak_21028 chr17 39059927 39060083 + 7.73508 NA Intergenic Intergenic -18510 NM_019010 54474 Hs.84905 NM_019010 HPRD:12193 KRT20 CD20|CK-20|CK20|K20|KRT21 keratin 20 protein-coding 13-PTNLD9-TUMOR_peak_47563 chr7 56142129 56142308 + 7.73508 NA intron (NM_015411, intron 4 of 8) intron (NM_015411, intron 4 of 8) 10301 NM_001042469 25870 Hs.279696 NM_015411 HPRD:06400 SUMF2 pFGE sulfatase modifying factor 2 protein-coding 13-PTNLD9-TUMOR_peak_8960 chr11 8355680 8355782 + 7.73508 NA Intergenic Intergenic -65549 NM_001270428 4004 Hs.654426 NM_002315 HPRD:01738 LMO1 RBTN1|RHOM1|TTG1 LIM domain only 1 (rhombotin 1) protein-coding 13-PTNLD9-TUMOR_peak_55826 chrX 48726331 48726602 + 7.73508 NA Intergenic LTR40A1|LTR|ERVL -28729 NM_001032382 10084 Hs.534384 NM_005710 HPRD:02354 PQBP1 MRX2|MRX55|MRXS3|MRXS8|NPW38|RENS1|SHS polyglutamine binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_29228 chr2 179417914 179418033 + 7.73508 NA exon (NM_133432, exon 164 of 192) exon (NM_133432, exon 164 of 192) 30055 NR_038271 100506866 Hs.710694 NR_038271 ENSG00000237298 TTN-AS1 - TTN antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_45917 chr6 112300060 112300202 + 7.73508 NA Intergenic MER91A|DNA|hAT-Tip100 -75147 NM_003880 8838 Hs.558428 NM_003880 HPRD:04550 WISP3 CCN6|LIBC|PPAC|PPD WNT1 inducible signaling pathway protein 3 protein-coding 13-PTNLD9-TUMOR_peak_18632 chr16 16214325 16214425 + 7.73508 NA intron (NM_004996, intron 23 of 30) intron (NM_004996, intron 23 of 30) 102953 NM_001171 368 Hs.442182 NM_001171 HPRD:04453 ABCC6 ABC34|ARA|EST349056|GACI2|MLP1|MOAT-E|MOATE|MRP6|PXE|PXE1|URG7 ATP-binding cassette, sub-family C (CFTR/MRP), member 6 protein-coding 13-PTNLD9-TUMOR_peak_8951 chr11 8028058 8028168 + 7.73508 NA Intergenic Intergenic 9943 NR_125366 103581031 Hs.249366 NR_125366 CASC23 LINC01464 cancer susceptibility candidate 23 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_45926 chr6 112787983 112788169 + 7.73508 NA Intergenic MER57B2|LTR|ERV1 119544 NM_001013734 442247 Hs.448264 NM_001013734 HPRD:18472 RFPL4B RNF211 ret finger protein-like 4B protein-coding 13-PTNLD9-TUMOR_peak_20449 chr17 8384573 8384718 + 7.73508 NA exon (NM_001256012, exon 38 of 43) exon (NM_001256012, exon 38 of 43) 45475 NM_030808 81565 Hs.372123 NM_030808 HPRD:06340 NDEL1 EOPA|MITAP1|NDE1L1|NDE2|NUDEL nudE neurodevelopment protein 1-like 1 protein-coding 13-PTNLD9-TUMOR_peak_42707 chr5 151456464 151456598 + 7.73508 NA intron (NR_109876, intron 1 of 2) L1HS|LINE|L1 118072 NR_109876 101927115 Hs.549665 NR_109876 ENSG00000254226 CTB-12O2.1 - uncharacterized LOC101927115 ncRNA 13-PTNLD9-TUMOR_peak_40948 chr5 56738154 56738488 + 7.73508 NA Intergenic MLT1G1|LTR|ERVL-MaLR 40315 NM_001017992 345651 Hs.482167 NM_001017992 HPRD:18598 ACTBL2 ACT actin, beta-like 2 protein-coding 13-PTNLD9-TUMOR_peak_10804 chr11 85375765 85375946 + 7.73508 NA non-coding (NR_028027, exon 1 of 4) non-coding (NR_028027, exon 1 of 4) 327 NR_028027 58487 Hs.535319 NM_021212 HPRD:07340 CREBZF SMILE|ZF CREB/ATF bZIP transcription factor protein-coding 13-PTNLD9-TUMOR_peak_50206 chr8 19576302 19576495 + 7.73485 NA Intergenic Intergenic -36137 NR_024040 55790 Hs.613729 NM_018371 HPRD:13114 CSGALNACT1 CSGalNAcT-1|ChGn|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_12995 chr12 56583364 56583536 + 7.73485 NA promoter-TSS (NM_003075) promoter-TSS (NM_003075) -99 NM_003075 6601 Hs.236030 NM_003075 HPRD:03437 SMARCC2 BAF170|CRACC2|Rsc8 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 protein-coding 13-PTNLD9-TUMOR_peak_31306 chr20 46601103 46601222 + 7.73485 NA Intergenic Intergenic -10808 NR_109942 101060004 Hs.129970 NR_109942 LINC01523 - long intergenic non-protein coding RNA 1523 ncRNA 13-PTNLD9-TUMOR_peak_44993 chr6 41743793 41743887 + 7.73485 NA intron (NM_006653, intron 3 of 6) intron (NM_006653, intron 3 of 6) 3803 NM_006653 10817 Hs.194208 NM_006653 HPRD:06373 FRS3 FRS2-beta|FRS2B|FRS2beta|SNT-2|SNT2 fibroblast growth factor receptor substrate 3 protein-coding 13-PTNLD9-TUMOR_peak_18398 chr16 4985386 4985594 + 7.73485 NA intron (NM_002705, intron 1 of 21) intron (NM_002705, intron 1 of 21) 1646 NM_002705 5493 Hs.192233 NM_002705 HPRD:04187 PPL - periplakin protein-coding 13-PTNLD9-TUMOR_peak_56081 chrX 68247618 68247889 + 7.73485 NA Intergenic Intergenic 137612 NM_145119 64219 Hs.522679 NM_022368 HPRD:02335 PJA1 PRAJA1|RNF70 praja ring finger 1, E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_49527 chr7 144081736 144082019 + 7.72594 NA Intergenic Intergenic 25443 NM_001080413 135935 Hs.558628 NM_001080413 ENSG00000106410 NOBOX OG-2|OG2|OG2X|POF5|TCAG_12042 NOBOX oogenesis homeobox protein-coding 13-PTNLD9-TUMOR_peak_37274 chr3 193498694 193498889 + 7.72394 NA Intergenic Intergenic -153670 NR_046634 100873941 Hs.679364 NR_046634 ENSG00000224855 OPA1-AS1 - OPA1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_28464 chr2 131939134 131939350 + 7.72394 NA Intergenic Intergenic -36682 NM_001083538 445582 Hs.686146 NM_001004054 HPRD:12329 POTEE A26C1|A26C1A|CT104.2|POTE-2|POTE2|POTE2gamma POTE ankyrin domain family, member E protein-coding 13-PTNLD9-TUMOR_peak_50629 chr8 37888818 37889068 + 7.72394 NA intron (NM_004095, intron 1 of 2) intron (NM_004095, intron 1 of 2) 923 NM_004095 1978 Hs.411641 NM_004095 HPRD:03746 EIF4EBP1 4E-BP1|4EBP1|BP-1|PHAS-I eukaryotic translation initiation factor 4E binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_24254 chr19 16045636 16045824 + 7.72394 NA promoter-TSS (NM_021187) promoter-TSS (NM_021187) -54 NM_021187 57834 Hs.187393 NM_021187 HPRD:07101 CYP4F11 CYPIVF11 cytochrome P450, family 4, subfamily F, polypeptide 11 protein-coding 13-PTNLD9-TUMOR_peak_22955 chr18 34903024 34903152 + 7.72394 NA intron (NM_001025087, intron 2 of 12) intron (NM_001025087, intron 2 of 12) 242912 NM_001025089 56853 Hs.435976 NM_020180 HPRD:12534 CELF4 BRUNOL-4|BRUNOL4 CUGBP, Elav-like family member 4 protein-coding 13-PTNLD9-TUMOR_peak_5536 chr1 223926667 223927129 + 7.72394 NA intron (NM_001748, intron 2 of 20) AluSx|SINE|Alu 26779 NM_001748 824 Hs.350899 NM_001748 HPRD:00254 CAPN2 CANP2|CANPL2|CANPml|mCANP calpain 2, (m/II) large subunit protein-coding 13-PTNLD9-TUMOR_peak_5822 chr1 231557290 231557668 + 7.72394 NA exon (NM_022051, exon 1 of 5) exon (NM_022051, exon 1 of 5) 3311 NM_022051 54583 Hs.444450 NM_022051 HPRD:06971 EGLN1 C1orf12|ECYT3|HIF-PH2|HIFPH2|HPH-2|HPH2|PHD2|SM20|ZMYND6 egl-9 family hypoxia-inducible factor 1 protein-coding 13-PTNLD9-TUMOR_peak_48657 chr7 102266367 102266476 + 7.72161 NA Intergenic L1ME3|LINE|L1 -9216 NM_006989 10156 Hs.530089 NM_006989 HPRD:12135 RASA4 CAPRI|GAPL RAS p21 protein activator 4 protein-coding 13-PTNLD9-TUMOR_peak_48703 chr7 104581930 104582100 + 7.71891 NA Intergenic Intergenic -14923 NR_027374 723809 Hs.124316 NR_027374 LHFPL3-AS2 - LHFPL3 antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_44729 chr6 34212235 34212534 + 7.71679 NA intron (NM_145899, intron 5 of 5) intron (NM_145899, intron 5 of 5) 3934 NR_106893 102465502 NR_106893 MIR6835 hsa-mir-6835 microRNA 6835 ncRNA 13-PTNLD9-TUMOR_peak_37795 chr4 6772910 6773285 + 7.71679 NA Intergenic Intergenic -11362 NM_001100590 9778 Hs.79276 NM_014743 HPRD:11070 KIAA0232 - KIAA0232 protein-coding 13-PTNLD9-TUMOR_peak_48643 chr7 102152493 102152592 + 7.71651 NA intron (NM_001277335, intron 1 of 19) CpG-24753 5682 NM_001277335 100271927 Hs.530089 NM_001277335 ENSG00000170667 RASA4B - RAS p21 protein activator 4B protein-coding 13-PTNLD9-TUMOR_peak_10082 chr11 62476526 62476620 + 7.71486 NA 3' UTR (NM_012202, exon 3 of 3) 3' UTR (NM_012202, exon 3 of 3) 518 NR_037948 26580 Hs.533709 NM_032667 HPRD:05858 BSCL2 GNG3LG|HMN5|PELD|SPG17 Berardinelli-Seip congenital lipodystrophy 2 (seipin) protein-coding 13-PTNLD9-TUMOR_peak_11400 chr11 119231794 119231938 + 7.70518 NA intron (NM_001243759, intron 1 of 11) intron (NM_001243759, intron 1 of 11) 3026 NM_171997 9099 Hs.524085 NM_004205 HPRD:05287 USP2 UBP41|USP9 ubiquitin specific peptidase 2 protein-coding 13-PTNLD9-TUMOR_peak_24626 chr19 30162344 30162615 + 7.70518 NA intron (NM_024310, intron 1 of 1) intron (NM_024310, intron 1 of 1) 6152 NM_024310 79156 Hs.466383 NM_024310 HPRD:15146 PLEKHF1 APPD|LAPF|PHAFIN1|ZFYVE15 pleckstrin homology domain containing, family F (with FYVE domain) member 1 protein-coding 13-PTNLD9-TUMOR_peak_120 chr1 2253773 2253983 + 7.70518 NA intron (NM_024848, intron 13 of 13) CpG 30222 NR_024489 100129534 Hs.655313 NM_001127577 LOC100129534 - small nuclear ribonucleoprotein polypeptide N pseudogene pseudo 13-PTNLD9-TUMOR_peak_23306 chr18 56358933 56359316 + 7.70518 NA intron (NM_006785, intron 2 of 16) AluY|SINE|Alu -20019 NM_001289967 101927322 Hs.644875 NM_001289967 LOC101927322 - uncharacterized LOC101927322 protein-coding 13-PTNLD9-TUMOR_peak_46669 chr7 1127652 1127791 + 7.70518 NA promoter-TSS (NM_001098201) promoter-TSS (NM_001098201) -2 NM_001098201 2852 Hs.20961 NM_001505 HPRD:03484 GPER1 CEPR|CMKRL2|DRY12|FEG-1|GPCR-Br|GPER|GPR30|LERGU|LERGU2|LyGPR|mER G protein-coupled estrogen receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_24775 chr19 36164406 36164660 + 7.70518 NA promoter-TSS (NR_046420) promoter-TSS (NR_046420) -340 NR_046420 100862728 Hs.569952 NR_046420 ENSG00000226510 UPK1A-AS1 - UPK1A antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_34824 chr3 63630832 63631191 + 7.70518 NA Intergenic L1PA4|LINE|L1 -7333 NM_001080537 132203 Hs.130704 NM_001080537 SNTN S100A1L|S100AL|sentan sentan, cilia apical structure protein protein-coding 13-PTNLD9-TUMOR_peak_49694 chr7 151456768 151456862 + 7.70518 NA intron (NM_001040633, intron 3 of 15) intron (NM_001040633, intron 3 of 15) 55142 NM_001040633 51422 Hs.647072 NM_016203 HPRD:04119 PRKAG2 AAKG|AAKG2|CMH6|H91620p|WPWS protein kinase, AMP-activated, gamma 2 non-catalytic subunit protein-coding 13-PTNLD9-TUMOR_peak_1096 chr1 36184274 36184559 + 7.70518 NA 5' UTR (NM_152374, exon 1 of 2) 5' UTR (NM_152374, exon 1 of 2) 374 NM_152374 127703 Hs.112023 NM_152374 HPRD:08798 C1orf216 - chromosome 1 open reading frame 216 protein-coding 13-PTNLD9-TUMOR_peak_25400 chr19 50227543 50227730 + 7.70518 NA Intergenic MER41E|LTR|ERV1 33271 NM_001199753 126129 Hs.112195 NM_152359 HPRD:12315 CPT1C CATL1|CPT1-B|CPT1P|CPTI-B|CPTIC carnitine palmitoyltransferase 1C protein-coding 13-PTNLD9-TUMOR_peak_28788 chr2 156299429 156299801 + 7.70518 NA Intergenic Intergenic 744522 NM_001260509 3760 Hs.591606 NM_002239 HPRD:03323 KCNJ3 GIRK1|KGA|KIR3.1 potassium inwardly-rectifying channel, subfamily J, member 3 protein-coding 13-PTNLD9-TUMOR_peak_19022 chr16 30725113 30725354 + 7.70518 NA intron (NM_006662, intron 16 of 33) AluY|SINE|Alu 3375 NR_002966 677813 Hs.689718 NR_002966 SNORA30 ACA30 small nucleolar RNA, H/ACA box 30 snoRNA 13-PTNLD9-TUMOR_peak_22071 chr17 74547019 74547267 + 7.70518 NA Intergenic MIRb|SINE|MIR -6703 NR_038111 100507246 Hs.288215 NR_038108 ENSG00000163597 SNHG16 ncRAN small nucleolar RNA host gene 16 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_52417 chr8 144309522 144309638 + 7.70518 NA Intergenic Intergenic 14512 NM_178172 338328 Hs.426410 NM_178172 HPRD:17347 GPIHBP1 GPI-HBP1 glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_30783 chr20 31377985 31378081 + 7.70518 NA intron (NM_006892, intron 7 of 22) intron (NM_006892, intron 7 of 22) 10375 NM_175850 1789 Hs.643024 NM_006892 HPRD:04209 DNMT3B ICF|ICF1|M.HsaIIIB DNA (cytosine-5-)-methyltransferase 3 beta protein-coding 13-PTNLD9-TUMOR_peak_37857 chr4 7971851 7972023 + 7.70437 NA intron (NM_001130085, intron 17 of 17) intron (NM_001130085, intron 17 of 17) -30284 NM_001134647 60312 Hs.529369 NM_021638 HPRD:09747 AFAP1 AFAP|AFAP-110|AFAP110 actin filament associated protein 1 protein-coding 13-PTNLD9-TUMOR_peak_43986 chr6 17706200 17706514 + 7.70437 NA intron (NM_001278210, intron 1 of 20) CpG 708 NM_001278209 9972 Hs.601591 NM_005124 HPRD:04899 NUP153 HNUP153|N153 nucleoporin 153kDa protein-coding 13-PTNLD9-TUMOR_peak_1865 chr1 55264827 55265008 + 7.70254 NA intron (NM_001114108, intron 1 of 6) intron (NM_001114108, intron 1 of 6) 2024 NM_001114108 55001 Hs.16230 NM_017904 HPRD:07932 TTC22 - tetratricopeptide repeat domain 22 protein-coding 13-PTNLD9-TUMOR_peak_44842 chr6 36986427 36986590 + 7.70254 NA intron (NM_173558, intron 9 of 15) Zaphod2|DNA|hAT-Tip100 13085 NM_173558 221472 Hs.509664 NM_173558 HPRD:05478 FGD2 ZFYVE4 FYVE, RhoGEF and PH domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_46239 chr6 148585172 148585360 + 7.70254 NA Intergenic Intergenic -78463 NM_015278 23328 Hs.193133 NM_015278 HPRD:06408 SASH1 SH3D6A|dJ323M4|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_51871 chr8 125539559 125539715 + 7.70254 NA intron (NM_032026, intron 1 of 11) MER72B|LTR|ERV1 11692 NM_001146160 83940 Hs.170568 NM_032026 HPRD:11621 TATDN1 - TatD DNase domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_40 chr1 839995 840107 + 7.70254 NA Intergenic CpG 15021 NR_026874 100130417 Hs.200644 NM_175912 LOC100130417 - uncharacterized LOC100130417 ncRNA 13-PTNLD9-TUMOR_peak_7300 chr10 49078633 49078740 + 7.70254 NA Intergenic Intergenic -126057 NR_003611 399761 Hs.571994 NM_001040053 ENSG00000204164 BMS1P5 BMS1LP1|BMS1LP5|BMS1P1|bA556L1.3 BMS1 pseudogene 5 pseudo 13-PTNLD9-TUMOR_peak_52014 chr8 129180059 129180377 + 7.70091 NA Intergenic Intergenic 17856 NR_031613 100302281 NR_031613 miRBase:MI0006341 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 13-PTNLD9-TUMOR_peak_39830 chr4 169508979 169509138 + 7.70091 NA intron (NM_016081, intron 2 of 20) intron (NM_016081, intron 2 of 20) -43710 NM_001166109 23022 Hs.151220 NM_016081 HPRD:09731 PALLD CGI151|MYN|PNCA1|SIH002 palladin, cytoskeletal associated protein protein-coding 13-PTNLD9-TUMOR_peak_3396 chr1 147362450 147362561 + 7.70091 NA Intergenic Intergenic -12441 NM_005267 2703 Hs.632441 NM_005267 HPRD:02939 GJA8 CAE|CAE1|CTRCT1|CX50|CZP1|MP70 gap junction protein, alpha 8, 50kDa protein-coding 13-PTNLD9-TUMOR_peak_1760 chr1 51762619 51762721 + 7.70091 NA intron (NM_001297663, intron 12 of 17) intron (NM_001297663, intron 12 of 17) 963 NM_001297667 22996 Hs.112949 NM_001080494 ENSG00000085831 TTC39A C1orf34|DEME-6 tetratricopeptide repeat domain 39A protein-coding 13-PTNLD9-TUMOR_peak_15801 chr14 54317520 54317649 + 7.70091 NA Intergenic L2b|LINE|L2 97618 NR_049843 100847076 NR_049843 miRBase:MI0019135 MIR5580 - microRNA 5580 ncRNA 13-PTNLD9-TUMOR_peak_788 chr1 27175830 27176064 + 7.70091 NA intron (NM_032283, intron 3 of 7) intron (NM_032283, intron 3 of 7) -13686 NM_006142 2810 Hs.523718 NM_006142 HPRD:03185 SFN YWHAS stratifin protein-coding 13-PTNLD9-TUMOR_peak_18537 chr16 12070577 12070675 + 7.70091 NA promoter-TSS (NM_032167) promoter-TSS (NM_032167) 24 NM_032167 92017 Hs.458401 NM_032167 HPRD:17437 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 13-PTNLD9-TUMOR_peak_22880 chr18 29665064 29665264 + 7.70091 NA Intergenic Intergenic -6654 NM_016271 51444 Hs.302408 NM_016271 HPRD:11508 RNF138 HSD-4|NARF|STRIN|hNARF ring finger protein 138, E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_27860 chr2 102313628 102314043 + 7.70091 NA promoter-TSS (NM_145687) promoter-TSS (NM_145687) -330 NM_004834 9448 Hs.701013 NM_004834 HPRD:05235 MAP4K4 FLH21957|HEL-S-31|HGK|MEKKK4|NIK mitogen-activated protein kinase kinase kinase kinase 4 protein-coding 13-PTNLD9-TUMOR_peak_21222 chr17 43463019 43463208 + 7.70091 NA Intergenic Intergenic 39899 NM_199282 201176 Hs.205326 NM_174919 HPRD:12477 ARHGAP27 CAMGAP1|PP905|SH3D20|SH3P20 Rho GTPase activating protein 27 protein-coding 13-PTNLD9-TUMOR_peak_47193 chr7 32202725 32202900 + 7.70091 NA intron (NM_001191058, intron 3 of 18) intron (NM_001191058, intron 3 of 18) -91764 NM_001191059 5137 Hs.728862 NM_005020 HPRD:04287 PDE1C Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C, calmodulin-dependent 70kDa protein-coding 13-PTNLD9-TUMOR_peak_52015 chr8 129180709 129180845 + 7.70091 NA Intergenic Intergenic 18415 NR_031613 100302281 NR_031613 miRBase:MI0006341 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 13-PTNLD9-TUMOR_peak_13818 chr12 110522538 110522790 + 7.70091 NA Intergenic Intergenic -17164 NM_207435 400073 Hs.44817 NM_207435 HPRD:13443 C12orf76 - chromosome 12 open reading frame 76 protein-coding 13-PTNLD9-TUMOR_peak_42865 chr5 159866268 159866370 + 7.70091 NA Intergenic Intergenic 17402 NM_001282383 9232 Hs.350966 NM_004219 HPRD:04998 PTTG1 EAP1|HPTTG|PTTG|TUTR1 pituitary tumor-transforming 1 protein-coding 13-PTNLD9-TUMOR_peak_35503 chr3 119692220 119692405 + 7.70091 NA intron (NM_001146156, intron 2 of 10) MER44D|DNA|TcMar-Tigger 120952 NM_001146156 2932 Hs.445733 NM_002093 HPRD:05418 GSK3B - glycogen synthase kinase 3 beta protein-coding 13-PTNLD9-TUMOR_peak_9564 chr11 36531551 36531663 + 7.69766 NA 5' UTR (NM_004620, exon 1 of 7) 5' UTR (NM_004620, exon 1 of 7) 256 NM_145803 7189 Hs.444172 NM_004620 TRAF6 MGC:3310|RNF85 TNF receptor-associated factor 6, E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_45703 chr6 89856604 89856859 + 7.69766 NA intron (NM_001010853, intron 1 of 6) intron (NM_001010853, intron 1 of 6) 962 NM_001010853 135293 Hs.356247 NM_001010853 HPRD:16473 PM20D2 ACY1L2|bA63L7.3 peptidase M20 domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_7584 chr10 70883197 70883291 + 7.69766 NA promoter-TSS (NM_004896) promoter-TSS (NM_004896) -664 NM_004896 9559 Hs.499925 NM_004896 HPRD:08385 VPS26A HB58|Hbeta58|PEP8A|VPS26 vacuolar protein sorting 26 homolog A (S. pombe) protein-coding 13-PTNLD9-TUMOR_peak_48237 chr7 87920849 87920996 + 7.69421 NA intron (NM_001205315, intron 1 of 5) intron (NM_001205315, intron 1 of 5) 15306 NM_024636 79689 Hs.521008 NM_024636 HPRD:11637 STEAP4 STAMP2|TIARP|TNFAIP9 STEAP family member 4 protein-coding 13-PTNLD9-TUMOR_peak_54187 chr9 101013968 101014063 + 7.69421 NA intron (NR_051978, intron 1 of 11) intron (NR_051978, intron 1 of 11) 3988 NR_051978 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family, member 2 protein-coding 13-PTNLD9-TUMOR_peak_974 chr1 32405490 32405632 + 7.69421 NA Intergenic Intergenic -1573 NM_080391 8073 Hs.470477 NM_003479 HPRD:03348 PTP4A2 HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b protein tyrosine phosphatase type IVA, member 2 protein-coding 13-PTNLD9-TUMOR_peak_19586 chr16 67430334 67430497 + 7.69141 NA intron (NM_013304, intron 8 of 10) intron (NM_013304, intron 8 of 10) -2977 NM_016140 51673 Hs.534458 NM_015964 HPRD:16710 TPPP3 TPPP/p20|p20|p25gamma tubulin polymerization-promoting protein family member 3 protein-coding 13-PTNLD9-TUMOR_peak_39997 chr4 185459218 185459405 + 7.69141 NA Intergenic L1M6|LINE|L1 -63585 NM_002199 3660 Hs.654566 NM_002199 HPRD:00962 IRF2 IRF-2 interferon regulatory factor 2 protein-coding 13-PTNLD9-TUMOR_peak_52783 chr9 15422367 15422491 + 7.69141 NA promoter-TSS (NM_001039697) promoter-TSS (NM_001039697) -353 NM_001039697 6619 Hs.546299 NM_003084 HPRD:03826 SNAPC3 PTFbeta|SNAP50 small nuclear RNA activating complex, polypeptide 3, 50kDa protein-coding 13-PTNLD9-TUMOR_peak_940 chr1 31845829 31846227 + 7.69141 NA promoter-TSS (NM_004102) promoter-TSS (NM_004102) -105 NM_004102 2170 Hs.657242 NM_004102 FABP3 FABP11|H-FABP|M-FABP|MDGI|O-FABP fatty acid binding protein 3, muscle and heart (mammary-derived growth inhibitor) protein-coding 13-PTNLD9-TUMOR_peak_1288 chr1 40442542 40442786 + 7.69141 NA Intergenic LTR10D|LTR|ERV1 21880 NM_032793 84879 Hs.655177 NM_032793 HPRD:07861 MFSD2A MFSD2|NLS1 major facilitator superfamily domain containing 2A protein-coding 13-PTNLD9-TUMOR_peak_29376 chr2 191885747 191885877 + 7.69141 NA Intergenic Intergenic -6836 NM_139266 6772 Hs.642990 NM_007315 HPRD:02777 STAT1 CANDF7|ISGF-3|STAT91 signal transducer and activator of transcription 1, 91kDa protein-coding 13-PTNLD9-TUMOR_peak_22482 chr18 3650022 3650229 + 7.69141 NA intron (NM_001242764, intron 4 of 9) AluSx1|SINE|Alu 46390 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_8834 chr11 2950942 2951078 + 7.69069 NA promoter-TSS (NM_003311) promoter-TSS (NM_003311) -360 NM_003311 7262 Hs.154036 NM_003311 HPRD:03679 PHLDA2 BRW1C|BWR1C|HLDA2|IPL|TSSC3 pleckstrin homology-like domain, family A, member 2 protein-coding 13-PTNLD9-TUMOR_peak_5952 chr1 235253813 235254092 + 7.69069 NA Intergenic Intergenic 37300 NR_002956 677802 Hs.744743 NR_002956 SNORA14B ACA14b small nucleolar RNA, H/ACA box 14B snoRNA 13-PTNLD9-TUMOR_peak_27770 chr2 98280004 98280127 + 7.69069 NA intron (NM_005735, intron 1 of 10) CpG 496 NM_005735 10120 Hs.98791 NM_005735 HPRD:05508 ACTR1B ARP1B|CTRN2|PC3 ARP1 actin-related protein 1 homolog B, centractin beta (yeast) protein-coding 13-PTNLD9-TUMOR_peak_33459 chr22 46731539 46731720 + 7.69060 NA non-coding (NR_104241, exon 1 of 10) non-coding (NR_104241, exon 1 of 10) 331 NM_001282783 55687 Hs.439524 NM_018006 HPRD:15571 TRMU MTO2|MTU1|TRMT|TRMT1|TRNT1 tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase protein-coding 13-PTNLD9-TUMOR_peak_13180 chr12 65889198 65889304 + 7.69060 NA intron (NR_120431, intron 3 of 3) MLT1K|LTR|ERVL-MaLR 146901 NR_120433 100507065 Hs.591038 NR_120431 ENSG00000250748 LOC100507065 - uncharacterized LOC100507065 ncRNA 13-PTNLD9-TUMOR_peak_1823 chr1 54038252 54038399 + 7.69060 NA intron (NM_147193, intron 3 of 9) intron (NM_147193, intron 3 of 9) 113253 NM_033067 63948 Hs.131654 NM_033067 HPRD:16828 DMRTB1 - DMRT-like family B with proline-rich C-terminal, 1 protein-coding 13-PTNLD9-TUMOR_peak_5130 chr1 204223160 204223535 + 7.69060 NA intron (NM_014935, intron 9 of 22) intron (NM_014935, intron 9 of 22) -40127 NM_198447 127845 Hs.532401 NM_198447 HPRD:13465 GOLT1A CGI-141|GOT1|HMFN1187|YMR292W golgi transport 1A protein-coding 13-PTNLD9-TUMOR_peak_50373 chr8 24245181 24245378 + 7.69060 NA non-coding (NR_125808, exon 2 of 6) non-coding (NR_125808, exon 2 of 6) 3481 NM_001145271 27299 Hs.521459 NM_014479 HPRD:07070 ADAMDEC1 M12.219 ADAM-like, decysin 1 protein-coding 13-PTNLD9-TUMOR_peak_30907 chr20 34824325 34824445 + 7.69060 NA promoter-TSS (NM_015511) promoter-TSS (NM_015511) 46 NM_001271874 25980 Hs.11314 NM_015511 HPRD:12767 AAR2 C20orf4 AAR2 splicing factor homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_11465 chr11 122579756 122579922 + 7.69060 NA intron (NM_032873, intron 1 of 13) AluJb|SINE|Alu 53441 NM_032873 84959 Hs.444075 NM_032873 HPRD:16463 UBASH3B STS-1|STS1|TULA-2|p70 ubiquitin associated and SH3 domain containing B protein-coding 13-PTNLD9-TUMOR_peak_43074 chr5 173141733 173141982 + 7.69060 NA intron (NR_108027, intron 1 of 2) L2|LINE|L2 31355 NR_108027 101928136 Hs.449267 NR_108027 LINC01484 - long intergenic non-protein coding RNA 1484 ncRNA 13-PTNLD9-TUMOR_peak_30801 chr20 32142849 32143122 + 7.69060 NA intron (NM_001032999, intron 1 of 10) MER57E1|LTR|ERV1 -7186 NM_001039709 9139 Hs.153934 NM_005093 HPRD:04721 CBFA2T2 EHT|MTGR1|ZMYND3|p85 core-binding factor, runt domain, alpha subunit 2; translocated to, 2 protein-coding 13-PTNLD9-TUMOR_peak_20576 chr17 17991035 17991238 + 7.69060 NA promoter-TSS (NM_001388) promoter-TSS (NM_001388) -45 NM_001388 1819 Hs.78582 NM_001388 HPRD:04286 DRG2 - developmentally regulated GTP binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_25029 chr19 41710321 41710428 + 7.69060 NA intron (NM_030622, intron 7 of 8) intron (NM_030622, intron 7 of 8) 11259 NM_030622 29785 Hs.98370 NM_030622 HPRD:07481 CYP2S1 - cytochrome P450, family 2, subfamily S, polypeptide 1 protein-coding 13-PTNLD9-TUMOR_peak_29923 chr2 224951409 224951512 + 7.69060 NA Intergenic Intergenic -47424 NM_006216 5270 Hs.38449 NM_006216 HPRD:01510 SERPINE2 GDN|GDNPF|PI-7|PI7|PN-1|PN1|PNI serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 protein-coding 13-PTNLD9-TUMOR_peak_37913 chr4 8856678 8856829 + 7.69060 NA Intergenic Intergenic 16790 NM_018942 3166 Hs.104134 NM_018942 HPRD:00873 HMX1 H6|NKX5-3 H6 family homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_30492 chr20 16910538 16910650 + 7.69060 NA Intergenic Intergenic 181596 NM_020157 56914 Hs.41119 NM_020157 HPRD:07300 OTOR FDP|MIAL1 otoraplin protein-coding 13-PTNLD9-TUMOR_peak_55564 chrX 14416914 14417018 + 7.69060 NA Intergenic Intergenic -130454 NM_001118885 2742 Hs.2700 NM_002063 HPRD:02379 GLRA2 GLR glycine receptor, alpha 2 protein-coding 13-PTNLD9-TUMOR_peak_21599 chr17 56032633 56032801 + 7.69060 NA promoter-TSS (NM_001271875) promoter-TSS (NM_001271875) -33 NM_001271875 404093 Hs.46679 NM_001271875 HPRD:13098 CUEDC1 - CUE domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_25956 chr2 1873787 1874014 + 7.69060 NA intron (NM_015025, intron 18 of 24) intron (NM_015025, intron 18 of 24) -125581 NM_012293 7837 Hs.332197 NM_012293 ENSG00000130508 PXDN COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO peroxidasin homolog (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_25961 chr2 2850547 2850832 + 7.69060 NA Intergenic Intergenic 279109 NR_110228 101927554 Hs.638446 NR_110228 ENSG00000234423 LINC01250 - long intergenic non-protein coding RNA 1250 ncRNA 13-PTNLD9-TUMOR_peak_24671 chr19 33061245 33061406 + 7.69060 NA Intergenic Intergenic -10769 NM_004708 9141 Hs.443831 NM_004708 HPRD:06843 PDCD5 TFAR19 programmed cell death 5 protein-coding 13-PTNLD9-TUMOR_peak_37160 chr3 188668792 188668895 + 7.68365 NA Intergenic MIRc|SINE|MIR -3415 NR_046873 100874043 Hs.616287 NR_046873 TPRG1-AS1 - TPRG1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_10152 chr11 64089133 64089293 + 7.68365 NA TTS (NM_012094) TTS (NM_012094) 3653 NM_181652 25824 Hs.502823 NM_012094 HPRD:05958 PRDX5 ACR1|AOEB166|B166|HEL-S-55|PLP|PMP20|PRDX6|PRXV|prx-V peroxiredoxin 5 protein-coding 13-PTNLD9-TUMOR_peak_1661 chr1 47641106 47641247 + 7.68365 NA Intergenic Intergenic -3746 NR_047498 100874253 Hs.435758 NR_047498 ENSG00000224805 LINC00853 PDZK1IP1-AS1|ncRNA-a4 long intergenic non-protein coding RNA 853 ncRNA 13-PTNLD9-TUMOR_peak_20232 chr17 1620417 1620539 + 7.68365 NA promoter-TSS (NR_028504) promoter-TSS (NR_028504) 661 NM_001163673 124997 Hs.234572 NM_152348 HPRD:08748 WDR81 CAMRQ2|PPP1R166 WD repeat domain 81 protein-coding 13-PTNLD9-TUMOR_peak_49082 chr7 130578156 130578369 + 7.68357 NA intron (NR_110472, intron 2 of 3) intron (NR_110472, intron 2 of 3) -15964 NR_029517 407024 NR_029517 miRBase:MI0000105 MIR29B1 MIRN29B1|miRNA29B1 microRNA 29b-1 ncRNA 13-PTNLD9-TUMOR_peak_53397 chr9 66458204 66458617 + 7.68015 NA intron (NR_121647, intron 1 of 4) CpG 1121 NR_121647 103352539 Hs.351215 NR_121647 LINC01410 - long intergenic non-protein coding RNA 1410 ncRNA 13-PTNLD9-TUMOR_peak_3271 chr1 145090389 145090563 + 7.67960 NA intron (NM_001277444, intron 20 of 24) MER41B|LTR|ERV1 -5931 NM_004892 9554 Hs.632438 NM_004892 SEC22B ERS-24|SEC22L1 SEC22 vesicle trafficking protein homolog B (S. cerevisiae) (gene/pseudogene) protein-coding 13-PTNLD9-TUMOR_peak_3486 chr1 149400286 149400540 + 7.67108 NA Intergenic CpG 31119 NR_027484 100132417 Hs.77424 NM_001128589 FCGR1C CD64c|FCRIC|IGFR1|IGFRC Fc fragment of IgG, high affinity Ic, receptor (CD64), pseudogene pseudo 13-PTNLD9-TUMOR_peak_36723 chr3 171529459 171529585 + 7.67108 NA Intergenic Intergenic -1238 NM_002662 5337 Hs.382865 NM_002662 HPRD:03855 PLD1 - phospholipase D1, phosphatidylcholine-specific protein-coding 13-PTNLD9-TUMOR_peak_1010 chr1 33226584 33226745 + 7.67108 NA intron (NM_020888, intron 1 of 6) intron (NM_020888, intron 1 of 6) -4571 NM_001198973 57648 Hs.591502 NM_020888 ENSG00000162522 KIAA1522 - KIAA1522 protein-coding 13-PTNLD9-TUMOR_peak_16747 chr15 20842980 20843074 + 7.67093 NA Intergenic Intergenic 75353 NR_027411 729786 Hs.592025 NR_027411 GOLGA8CP GOLGA8C golgin A8 family, member C, pseudogene pseudo 13-PTNLD9-TUMOR_peak_19520 chr16 65694457 65694624 + 7.67093 NA Intergenic Intergenic -84337 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 13-PTNLD9-TUMOR_peak_50732 chr8 42053877 42054219 + 7.67093 NA intron (NM_000930, intron 1 of 13) intron (NM_000930, intron 1 of 13) 11146 NM_033011 5327 Hs.491582 NM_000930 HPRD:01419 PLAT T-PA|TPA plasminogen activator, tissue protein-coding 13-PTNLD9-TUMOR_peak_37019 chr3 185216242 185216473 + 7.67093 NA intron (NM_080652, intron 1 of 4) CpG 488 NM_080652 90407 Hs.677570 NM_080652 HPRD:15539 TMEM41A 2900010K02Rik transmembrane protein 41A protein-coding 13-PTNLD9-TUMOR_peak_29633 chr2 206547070 206547211 + 7.67093 NA promoter-TSS (NM_201279) promoter-TSS (NM_201279) -84 NM_201266 8828 Hs.471200 NM_003872 HPRD:03643 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 13-PTNLD9-TUMOR_peak_17848 chr15 84048847 84049038 + 7.67093 NA Intergenic Intergenic -67038 NM_001301109 6457 Hs.270055 NM_003027 HPRD:04528 SH3GL3 CNSA3|EEN-B2|HsT19371|SH3D2C|SH3P13 SH3-domain GRB2-like 3 protein-coding 13-PTNLD9-TUMOR_peak_666 chr1 23695339 23695511 + 7.67093 NA promoter-TSS (NM_030634) promoter-TSS (NM_030634) -39 NR_033690 148898 Hs.61884 NM_138479 HPRD:14083 C1orf213 - chromosome 1 open reading frame 213 ncRNA 13-PTNLD9-TUMOR_peak_42035 chr5 131781729 131781969 + 7.67093 NA intron (NR_045116, intron 2 of 3) intron (NR_045116, intron 2 of 3) 35384 NR_045116 441108 Hs.658288 NM_001013717 HPRD:18460 C5orf56 - chromosome 5 open reading frame 56 ncRNA 13-PTNLD9-TUMOR_peak_49553 chr7 148611416 148611679 + 7.67078 NA Intergenic Intergenic -30106 NM_001203248 2146 Hs.444082 NM_004456 HPRD:03342 EZH2 ENX-1|ENX1|EZH1|EZH2b|KMT6|KMT6A|WVS|WVS2 enhancer of zeste 2 polycomb repressive complex 2 subunit protein-coding 13-PTNLD9-TUMOR_peak_2990 chr1 116710689 116710798 + 7.67078 NA Intergenic G-rich|Low_complexity|Low_complexity 56367 NM_152367 126868 Hs.376194 NM_152367 HPRD:08245 MAB21L3 C1orf161 mab-21-like 3 (C. elegans) protein-coding 13-PTNLD9-TUMOR_peak_37250 chr3 192232567 192232693 + 7.67078 NA intron (NM_004113, intron 2 of 5) CpG -105792 NM_021032 2257 Hs.390250 NM_004113 HPRD:03303 FGF12 FGF12B|FHF1 fibroblast growth factor 12 protein-coding 13-PTNLD9-TUMOR_peak_11596 chr11 128372022 128372126 + 7.67078 NA intron (NM_001143820, intron 3 of 9) intron (NM_001143820, intron 3 of 9) 20131 NM_005238 2113 Hs.369438 NM_005238 HPRD:01260 ETS1 ETS-1|EWSR2|p54 v-ets avian erythroblastosis virus E26 oncogene homolog 1 protein-coding 13-PTNLD9-TUMOR_peak_6452 chr10 10839166 10839384 + 7.67078 NA Intergenic MER113|DNA|hAT-Charlie -2398 NR_027082 207107 Hs.31562 NR_027082 ENSG00000225383 SFTA1P SFTPF surfactant associated 1, pseudogene pseudo 13-PTNLD9-TUMOR_peak_9451 chr11 33270111 33270246 + 7.67078 NA Intergenic Intergenic -8040 NM_001278163 10114 Hs.201918 NM_005734 HPRD:05111 HIPK3 DYRK6|FIST3|PKY|YAK1 homeodomain interacting protein kinase 3 protein-coding 13-PTNLD9-TUMOR_peak_42082 chr5 133362321 133362475 + 7.67078 NA Intergenic Intergenic -21574 NM_003374 7416 Hs.519320 NM_003374 HPRD:05137 VDAC1 PORIN|VDAC-1 voltage-dependent anion channel 1 protein-coding 13-PTNLD9-TUMOR_peak_12330 chr12 25653735 25653895 + 7.67078 NA intron (NM_001145729, intron 8 of 8) intron (NM_001145729, intron 8 of 8) 52402 NM_001145728 160492 Hs.44647 NM_152590 HPRD:08768 LMNTD1 IFLTD1|PAS1C1 lamin tail domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_2388 chr1 88807551 88807743 + 7.67078 NA Intergenic L1PA2|LINE|L1 -342275 NM_006256 5586 Hs.440833 NM_006256 HPRD:03972 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 13-PTNLD9-TUMOR_peak_26849 chr2 47292980 47293391 + 7.66273 NA intron (NM_001288955, intron 18 of 18) intron (NM_001288955, intron 18 of 18) 89332 NM_173649 285051 Hs.531575 NM_173649 HPRD:08273 C2orf61 - chromosome 2 open reading frame 61 protein-coding 13-PTNLD9-TUMOR_peak_52443 chr8 144647310 144647468 + 7.66273 NA TTS (NM_001100878) TTS (NM_001100878) 6912 NM_024736 79792 Hs.118983 NM_024736 HPRD:11014 GSDMD DF5L|DFNA5L|GSDMDC1 gasdermin D protein-coding 13-PTNLD9-TUMOR_peak_42915 chr5 167759126 167759221 + 7.66273 NA intron (NM_015238, intron 1 of 22) AluSz|SINE|Alu 40108 NM_001161662 23286 Hs.484047 NM_015238 HPRD:10033 WWC1 HBEBP3|HBEBP36|KIBRA|MEMRYQTL|PPP1R168 WW and C2 domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_54107 chr9 98980499 98980643 + 7.66273 NA Intergenic CpG 83863 NM_000197 3293 Hs.477 NM_000197 HPRD:05716 HSD17B3 EDH17B3|SDR12C2 hydroxysteroid (17-beta) dehydrogenase 3 protein-coding 13-PTNLD9-TUMOR_peak_133 chr1 2412540 2412708 + 7.66273 NA intron (NM_014638, intron 4 of 21) intron (NM_014638, intron 4 of 21) 4870 NM_014638 9651 Hs.170156 NM_014638 ENSG00000149527 PLCH2 PLC-eta2|PLCL4|PLCeta2 phospholipase C, eta 2 protein-coding 13-PTNLD9-TUMOR_peak_30136 chr2 239196361 239196532 + 7.66273 NA intron (NM_022817, intron 1 of 22) intron (NM_022817, intron 1 of 22) 761 NM_022817 8864 Hs.58756 NM_003894 HPRD:04575 PER2 FASPS|FASPS1 period circadian clock 2 protein-coding 13-PTNLD9-TUMOR_peak_134 chr1 2413437 2413706 + 7.66273 NA intron (NM_014638, intron 4 of 21) intron (NM_014638, intron 4 of 21) 5817 NM_014638 9651 Hs.170156 NM_014638 ENSG00000149527 PLCH2 PLC-eta2|PLCL4|PLCeta2 phospholipase C, eta 2 protein-coding 13-PTNLD9-TUMOR_peak_48216 chr7 86848987 86849175 + 7.66247 NA promoter-TSS (NM_024315) promoter-TSS (NM_024315) -50 NM_024315 79161 Hs.619593 NM_024315 HPRD:12911 TMEM243 C7orf23|MM-TRAG transmembrane protein 243, mitochondrial protein-coding 13-PTNLD9-TUMOR_peak_4933 chr1 201229160 201229418 + 7.66247 NA Intergenic Intergenic -23291 NM_001005337 5317 Hs.497350 NM_000299 HPRD:03579 PKP1 B6P plakophilin 1 protein-coding 13-PTNLD9-TUMOR_peak_43967 chr6 17016280 17016602 + 7.66202 NA Intergenic LTR12D|LTR|ERV1 -86048 NM_001190766 401236 Hs.677399 NM_001190766 ENSG00000230873 STMND1 - stathmin domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_25095 chr19 44555373 44555481 + 7.66202 NA promoter-TSS (NM_013361) promoter-TSS (NM_013361) -737 NM_013361 7766 Hs.720813 NM_013361 HPRD:15749 ZNF223 - zinc finger protein 223 protein-coding 13-PTNLD9-TUMOR_peak_22082 chr17 74705584 74705679 + 7.66202 NA intron (NM_001008529, intron 1 of 4) intron (NM_001008529, intron 1 of 4) 1425 NM_198530 439921 Hs.250723 NM_198530 HPRD:18199 MXRA7 PS1TP1|TMAP1 matrix-remodelling associated 7 protein-coding 13-PTNLD9-TUMOR_peak_1896 chr1 56192722 56192959 + 7.66202 NA Intergenic Intergenic 501526 NR_039618 100616272 NR_039618 miRBase:MI0016759 MIR4422 - microRNA 4422 ncRNA 13-PTNLD9-TUMOR_peak_5523 chr1 223744440 223744691 + 7.66202 NA intron (NM_001143962, intron 10 of 16) intron (NM_001143962, intron 10 of 16) 108871 NM_001143962 388743 Hs.291487 NM_001143962 CAPN8 nCL-2 calpain 8 protein-coding 13-PTNLD9-TUMOR_peak_54915 chr9 132891354 132891516 + 7.66202 NA 3' UTR (NM_001287346, exon 17 of 17) 3' UTR (NM_001287346, exon 17 of 17) -43422 NM_014286 23413 Hs.642946 NM_014286 HPRD:04500 NCS1 FLUP|FREQ neuronal calcium sensor 1 protein-coding 13-PTNLD9-TUMOR_peak_25477 chr19 51425615 51425762 + 7.66202 NA Intergenic Intergenic -11694 NM_004917 9622 Hs.218366 NM_004917 HPRD:04793 KLK4 AI2A1|ARM1|EMSP|EMSP1|KLK-L1|PRSS17|PSTS|kallikrein kallikrein-related peptidase 4 protein-coding 13-PTNLD9-TUMOR_peak_8354 chr10 113900056 113900160 + 7.66202 NA Intergenic Intergenic 43429 NM_001244949 57678 Hs.42586 NM_020918 HPRD:03865 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 13-PTNLD9-TUMOR_peak_35631 chr3 124248809 124249000 + 7.66202 NA intron (NM_001024660, intron 33 of 59) intron (NM_001024660, intron 33 of 59) -54602 NM_007064 8997 Hs.8004 NM_003947 HPRD:06859 KALRN ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD kalirin, RhoGEF kinase protein-coding 13-PTNLD9-TUMOR_peak_20042 chr16 87823754 87823967 + 7.66202 NA Intergenic Intergenic -11106 NR_120309 102724467 Hs.587857 NR_120309 LOC102724467 - uncharacterized LOC102724467 ncRNA 13-PTNLD9-TUMOR_peak_38590 chr4 75310664 75311255 + 7.66202 NA 5' UTR (NM_001657, exon 1 of 6) 5' UTR (NM_001657, exon 1 of 6) 144 NM_001657 374 Hs.270833 NM_001657 HPRD:00093 AREG AR|AREGB|CRDGF|SDGF amphiregulin protein-coding 13-PTNLD9-TUMOR_peak_15979 chr14 62358128 62358276 + 7.66202 NA Intergenic Intergenic -104339 NM_031914 83851 Hs.404139 NM_031914 HPRD:15461 SYT16 CHR14SYT|SYT14L|Strep14|syt14r|yt14r synaptotagmin XVI protein-coding 13-PTNLD9-TUMOR_peak_26230 chr2 18481197 18481374 + 7.66202 NA Intergenic Intergenic 260674 NM_020905 57665 Hs.120319 NM_020905 HPRD:10190 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 (all-trans/9-cis/11-cis) protein-coding 13-PTNLD9-TUMOR_peak_21298 chr17 45331191 45331436 + 7.66202 NA intron (NM_000212, intron 1 of 14) CpG 105 NM_000212 3690 Hs.218040 NM_000212 HPRD:01428 ITGB3 BDPLT16|BDPLT2|CD61|GP3A|GPIIIa|GT integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61) protein-coding 13-PTNLD9-TUMOR_peak_5883 chr1 234129513 234129712 + 7.66202 NA intron (NM_173508, intron 2 of 7) intron (NM_173508, intron 2 of 7) 89154 NM_173508 148641 Hs.158748 NM_173508 HPRD:15378 SLC35F3 - solute carrier family 35, member F3 protein-coding 13-PTNLD9-TUMOR_peak_25613 chr19 54362195 54362341 + 7.66202 NA Intergenic Intergenic -6570 NM_001290193 91663 Hs.380906 NM_138373 HPRD:14792 MYADM SB135 myeloid-associated differentiation marker protein-coding 13-PTNLD9-TUMOR_peak_13795 chr12 110117686 110117827 + 7.66202 NA Intergenic Intergenic -34431 NM_032829 84915 Hs.661785 NM_032829 HPRD:07868 FAM222A C12orf34 family with sequence similarity 222, member A protein-coding 13-PTNLD9-TUMOR_peak_7342 chr10 50777136 50777247 + 7.66202 NA Intergenic LTR8A|LTR|ERV1 -29607 NM_001277059 101243544 Hs.49063 NM_001277058 ENSG00000243251 ERCC6-PGBD3 CPFP|CSB-PGBD3 ERCC6-PGBD3 readthrough protein-coding 13-PTNLD9-TUMOR_peak_36291 chr3 146468103 146468279 + 7.66202 NA Intergenic L1PA15|LINE|L1 -144188 NM_001085420 389158 Hs.254692 NM_001085420 ENSG00000231213 PLSCR5 - phospholipid scramblase family, member 5 protein-coding 13-PTNLD9-TUMOR_peak_53033 chr9 33320572 33320716 + 7.66202 NA intron (NM_002504, intron 9 of 23) intron (NM_002504, intron 9 of 23) 30226 NM_147133 4799 Hs.413074 NM_002504 HPRD:11936 NFX1 NFX2|TEG-42|Tex42 nuclear transcription factor, X-box binding 1 protein-coding 13-PTNLD9-TUMOR_peak_7780 chr10 76871057 76871315 + 7.66202 NA promoter-TSS (NM_144660) promoter-TSS (NM_144660) -207 NM_001174156 142891 Hs.744986 NM_144660 HPRD:18014 SAMD8 HEL-177|SMSr sterile alpha motif domain containing 8 protein-coding 13-PTNLD9-TUMOR_peak_24769 chr19 36095978 36096240 + 7.66202 NA Intergenic MER72|LTR|ERV1 7312 NR_110750 102723617 Hs.579904 NR_110750 LOC102723617 - uncharacterized LOC102723617 ncRNA 13-PTNLD9-TUMOR_peak_39725 chr4 156874752 156874878 + 7.66202 NA intron (NM_001334, intron 1 of 7) CpG 233 NM_001334 1519 Hs.75262 NM_001334 HPRD:02772 CTSO CTSO1 cathepsin O protein-coding 13-PTNLD9-TUMOR_peak_50806 chr8 43831073 43831290 + 7.65388 NA Intergenic ALR/Alpha|Satellite|centr 683596 NM_001005365 340441 Hs.531579 NM_001002920 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family, member A protein-coding 13-PTNLD9-TUMOR_peak_25685 chr19 55895281 55895480 + 7.64888 NA exon (NM_001190764, exon 1 of 2) exon (NM_001190764, exon 1 of 2) 247 NM_001190764 388564 Hs.534672 NM_001190764 TMEM238 - transmembrane protein 238 protein-coding 13-PTNLD9-TUMOR_peak_53059 chr9 33795342 33795443 + 7.64888 NA promoter-TSS (NM_002771) promoter-TSS (NM_002771) -167 NM_002771 5646 Hs.654513 NM_002771 HPRD:06685 PRSS3 MTG|PRSS4|T9|TRY3|TRY4 protease, serine, 3 protein-coding 13-PTNLD9-TUMOR_peak_35974 chr3 133287594 133287810 + 7.64785 NA Intergenic MamRep605|Unknown|Unknown -4732 NM_001134422 55573 Hs.518265 NM_017548 HPRD:13627 CDV3 H41 CDV3 homolog (mouse) protein-coding 13-PTNLD9-TUMOR_peak_24149 chr19 13965429 13965695 + 7.64785 NA Intergenic AluY|SINE|Alu -18089 NR_029495 407010 NR_029495 miRBase:MI0000079 MIR23A MIRN23A|hsa-mir-23a|miRNA23A microRNA 23a ncRNA 13-PTNLD9-TUMOR_peak_18337 chr16 3989460 3989577 + 7.64573 NA Intergenic Tigger3b|DNA|TcMar-Tigger 10927 NR_120311 102724927 Hs.364739 NR_120311 LOC102724927 - uncharacterized LOC102724927 ncRNA 13-PTNLD9-TUMOR_peak_29297 chr2 186053487 186053618 + 7.64573 NA Intergenic L1M1|LINE|L1 -549803 NM_173651 401024 Hs.98025 NM_173651 HPRD:13483 FSIP2 - fibrous sheath interacting protein 2 protein-coding 13-PTNLD9-TUMOR_peak_15914 chr14 59748402 59748575 + 7.64573 NA intron (NM_001270520, intron 2 of 24) L2c|LINE|L2 18329 NM_014992 23002 Hs.19156 NM_014992 HPRD:09433 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 13-PTNLD9-TUMOR_peak_39937 chr4 183727651 183727745 + 7.64573 NA Intergenic CpG 110932 NM_001921 1635 Hs.183850 NM_001921 HPRD:09623 DCTD - dCMP deaminase protein-coding 13-PTNLD9-TUMOR_peak_28959 chr2 165456629 165456730 + 7.64573 NA intron (NM_004490, intron 2 of 13) intron (NM_004490, intron 2 of 13) 21681 NM_004490 2888 Hs.411881 NM_004490 HPRD:03313 GRB14 - growth factor receptor-bound protein 14 protein-coding 13-PTNLD9-TUMOR_peak_47245 chr7 36645001 36645175 + 7.64573 NA intron (NM_001177506, intron 11 of 21) intron (NM_001177506, intron 11 of 21) -5362 NR_046764 100874264 Hs.690994 NR_046764 AOAH-IT1 - AOAH intronic transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_29930 chr2 225835994 225836259 + 7.64573 NA intron (NM_014689, intron 1 of 55) intron (NM_014689, intron 1 of 55) -24344 NM_001290263 55619 Hs.46578 NM_014689 HPRD:10919 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 13-PTNLD9-TUMOR_peak_10566 chr11 72542614 72542761 + 7.64573 NA Intergenic Intergenic 17236 NM_033388 89849 Hs.653186 NM_033388 HPRD:10959 ATG16L2 ATG16B|WDR80 autophagy related 16-like 2 (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_21861 chr17 66165404 66165859 + 7.64573 NA Intergenic LTR12C|LTR|ERV1 -29170 NR_027283 440461 Hs.661522 NR_027283 LOC440461 - Rho GTPase activating protein 27 pseudogene pseudo 13-PTNLD9-TUMOR_peak_19290 chr16 49636534 49636642 + 7.64573 NA intron (NM_015069, intron 5 of 7) intron (NM_015069, intron 5 of 7) 220061 NM_015069 23090 Hs.530930 NM_015069 HPRD:05189 ZNF423 Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104 zinc finger protein 423 protein-coding 13-PTNLD9-TUMOR_peak_26083 chr2 10197668 10197862 + 7.64573 NA 3' UTR (NM_001037160, exon 3 of 3) 3' UTR (NM_001037160, exon 3 of 3) 13393 NM_001177718 8462 Hs.12229 NM_003597 HPRD:04488 KLF11 FKLF|FKLF1|MODY7|TIEG2|Tieg3 Kruppel-like factor 11 protein-coding 13-PTNLD9-TUMOR_peak_33193 chr22 36513246 36513513 + 7.64573 NA Intergenic Intergenic 43598 NR_027833 80833 Hs.474737 NM_014349 HPRD:06264 APOL3 APOLIII|CG121 apolipoprotein L, 3 protein-coding 13-PTNLD9-TUMOR_peak_12784 chr12 51964986 51965090 + 7.64573 NA Intergenic L1PA3|LINE|L1 -19982 NM_001177984 6334 Hs.436550 NM_014191 HPRD:09006 SCN8A CERIII|CIAT|EIEE13|MED|NaCh6|Nav1.6|PN4 sodium channel, voltage gated, type VIII, alpha subunit protein-coding 13-PTNLD9-TUMOR_peak_52759 chr9 13729088 13729382 + 7.64573 NA Intergenic LTR78|LTR|ERV1 -198735 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA 13-PTNLD9-TUMOR_peak_25951 chr2 1733826 1733933 + 7.64573 NA intron (NM_012293, intron 1 of 22) intron (NM_012293, intron 1 of 22) 14440 NM_012293 7837 Hs.332197 NM_012293 ENSG00000130508 PXDN COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO peroxidasin homolog (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_54525 chr9 117041263 117041431 + 7.64573 NA intron (NM_032888, intron 37 of 60) intron (NM_032888, intron 37 of 60) -43956 NM_000607 5004 Hs.522356 NM_000607 HPRD:00724 ORM1 AGP-A|AGP1|HEL-S-153w|ORM orosomucoid 1 protein-coding 13-PTNLD9-TUMOR_peak_29527 chr2 201704365 201704481 + 7.64573 NA Intergenic L1M1|LINE|L1 24861 NM_001162407 1195 Hs.433732 NM_004071 HPRD:09058 CLK1 CLK|CLK/STY|STY CDC-like kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_8210 chr10 104093997 104094117 + 7.64573 NA intron (NM_001199379, intron 3 of 39) intron (NM_001199379, intron 3 of 39) -59810 NM_001288724 4791 Hs.73090 NM_002502 HPRD:01239 NFKB2 CVID10|H2TF1|LYT-10|LYT10|NF-kB2|p105|p52 nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100) protein-coding 13-PTNLD9-TUMOR_peak_10450 chr11 69339323 69339588 + 7.64573 NA Intergenic Intergenic 39126 NR_120545 101928292 Hs.736219 NR_120542 LINC01488 - long intergenic non-protein coding RNA 1488 ncRNA 13-PTNLD9-TUMOR_peak_27054 chr2 64068823 64068981 + 7.64511 NA promoter-TSS (NM_006759) promoter-TSS (NM_006759) -112 NM_006759 7360 Hs.516217 NM_006759 HPRD:08934 UGP2 UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 UDP-glucose pyrophosphorylase 2 protein-coding 13-PTNLD9-TUMOR_peak_5146 chr1 204388334 204388485 + 7.64511 NA Intergenic L2c|LINE|L2 -7464 NM_032833 84919 Hs.304376 NM_032833 HPRD:17892 PPP1R15B CREP protein phosphatase 1, regulatory subunit 15B protein-coding 13-PTNLD9-TUMOR_peak_53909 chr9 91152535 91152720 + 7.64511 NA intron (NM_145283, intron 1 of 2) intron (NM_145283, intron 1 of 2) 2611 NM_001161625 158046 Hs.734507 NM_145283 HPRD:12938 NXNL2 C9orf121|RDCVF2 nucleoredoxin-like 2 protein-coding 13-PTNLD9-TUMOR_peak_20621 chr17 19093079 19093190 + 7.64509 NA Intergenic CpG -29561 NM_001291904 79999 Hs.677375 NM_024934 LOC79999 - uncharacterized LOC79999 protein-coding 13-PTNLD9-TUMOR_peak_5269 chr1 206570945 206571146 + 7.64292 NA intron (NM_001170637, intron 4 of 19) intron (NM_001170637, intron 4 of 19) 13678 NR_120535 100996712 Hs.497575 NM_001271887 SRGAP2D - SLIT-ROBO Rho GTPase activating protein 2D (pseudogene) pseudo 13-PTNLD9-TUMOR_peak_43491 chr6 2988849 2989037 + 7.64292 NA non-coding (NR_026855, exon 2 of 2) non-coding (NR_026855, exon 2 of 2) 742 NR_026856 401232 Hs.720158 NM_207495 HPRD:16819 LINC01011 DKFZP686I15217 long intergenic non-protein coding RNA 1011 ncRNA 13-PTNLD9-TUMOR_peak_11951 chr12 6310470 6310597 + 7.64215 NA intron (NM_001769, intron 1 of 7) intron (NM_001769, intron 1 of 7) 1051 NM_001769 928 Hs.114286 NM_001769 HPRD:00880 CD9 BTCC-1|DRAP-27|MIC3|MRP-1|TSPAN-29|TSPAN29 CD9 molecule protein-coding 13-PTNLD9-TUMOR_peak_35315 chr3 111304139 111304328 + 7.64215 NA intron (NM_198196, intron 6 of 14) intron (NM_198196, intron 6 of 14) 9949 NM_024508 79413 Hs.136912 NM_024508 HPRD:15686 ZBED2 - zinc finger, BED-type containing 2 protein-coding 13-PTNLD9-TUMOR_peak_50290 chr8 22419114 22419454 + 7.64144 NA intron (NM_005775, intron 6 of 20) intron (NM_005775, intron 6 of 20) -3895 NM_001018003 10174 Hs.528572 NM_005775 HPRD:11535 SORBS3 SCAM-1|SCAM1|SH3D4 sorbin and SH3 domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_34509 chr3 48693999 48694163 + 7.64010 NA intron (NM_001407, intron 2 of 34) CpG-18490 6267 NM_001407 1951 Hs.631926 NM_001407 HPRD:09179 CELSR3 CDHF11|EGFL1|FMI1|HFMI1|MEGF2|RESDA1 cadherin, EGF LAG seven-pass G-type receptor 3 protein-coding 13-PTNLD9-TUMOR_peak_27419 chr2 85619729 85619871 + 7.64010 NA TTS (NM_032213) TTS (NM_032213) 18020 NM_001256140 822 Hs.516155 NM_001747 HPRD:01088 CAPG AFCP|HEL-S-66|MCP capping protein (actin filament), gelsolin-like protein-coding 13-PTNLD9-TUMOR_peak_51136 chr8 71579437 71579603 + 7.64010 NA intron (NM_016027, intron 1 of 6) L2b|LINE|L2 1927 NM_016027 51110 Hs.118554 NM_016027 HPRD:13955 LACTB2 - lactamase, beta 2 protein-coding 13-PTNLD9-TUMOR_peak_38442 chr4 56261677 56261795 + 7.64010 NA promoter-TSS (NM_018475) promoter-TSS (NM_018475) -344 NM_018475 55858 Hs.479766 NM_018475 HPRD:18216 TMEM165 CDG2K|FT27|GDT1|TMPT27|TPARL transmembrane protein 165 protein-coding 13-PTNLD9-TUMOR_peak_23274 chr18 55487407 55487542 + 7.64010 NA Intergenic Intergenic -17147 NM_005603 5205 Hs.216623 NM_005603 HPRD:03867 ATP8B1 ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1 ATPase, aminophospholipid transporter, class I, type 8B, member 1 protein-coding 13-PTNLD9-TUMOR_peak_35264 chr3 107675868 107676261 + 7.64010 NA Intergenic Intergenic 74012 NR_015394 285205 Hs.134882 NR_015394 ENSG00000240423 LINC00636 - long intergenic non-protein coding RNA 636 ncRNA 13-PTNLD9-TUMOR_peak_18138 chr16 285041 285170 + 7.64010 NA intron (NR_104317, intron 1 of 13) CpG 560 NM_001284497 83986 Hs.513225 NM_032039 HPRD:12677 ITFG3 C16orf9|gs19 integrin alpha FG-GAP repeat containing 3 protein-coding 13-PTNLD9-TUMOR_peak_20376 chr17 7123434 7123629 + 7.64010 NA promoter-TSS (NM_001365) promoter-TSS (NM_001365) -162 NM_001365 1742 Hs.463928 NM_001365 HPRD:04199 DLG4 PSD95|SAP-90|SAP90 discs, large homolog 4 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_19288 chr16 49620396 49620508 + 7.63623 NA intron (NM_015069, intron 5 of 7) intron (NM_015069, intron 5 of 7) 212644 NM_144602 123970 Hs.125875 NM_144602 HPRD:14560 C16orf78 - chromosome 16 open reading frame 78 protein-coding 13-PTNLD9-TUMOR_peak_42265 chr5 138728396 138728494 + 7.63623 NA exon (NM_001161546, exon 1 of 1) exon (NM_001161546, exon 1 of 1) 2440 NM_001161546 389333 Hs.729482 NM_001161546 ENSG00000228672 PROB1 C5orf65 proline-rich basic protein 1 protein-coding 13-PTNLD9-TUMOR_peak_24462 chr19 19643135 19643250 + 7.63623 NA intron (NM_198537, intron 2 of 6) CpG 3522 NM_001190328 374887 Hs.729508 NM_198537 HPRD:13498 YJEFN3 - YjeF N-terminal domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_2703 chr1 107599755 107600168 + 7.63623 NA exon (NM_018137, exon 1 of 1) exon (NM_018137, exon 1 of 1) 694 NM_018137 55170 Hs.26006 NM_018137 HPRD:10505 PRMT6 HRMT1L6 protein arginine methyltransferase 6 protein-coding 13-PTNLD9-TUMOR_peak_36742 chr3 172234675 172234933 + 7.63623 NA TTS (NM_001190943) TTS (NM_001190943) 6461 NM_001190943 8743 Hs.478275 NM_003810 HPRD:04670 TNFSF10 APO2L|Apo-2L|CD253|TL2|TRAIL tumor necrosis factor (ligand) superfamily, member 10 protein-coding 13-PTNLD9-TUMOR_peak_44424 chr6 29944422 29944557 + 7.63623 NA intron (NR_028032, intron 1 of 2) CpG 1597 NR_028032 10255 Hs.656251 NM_005844 HPRD:17092 HCG9 HCGIX|HCGIX4 HLA complex group 9 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_42527 chr5 147101167 147101401 + 7.63623 NA intron (NM_001270941, intron 1 of 21) L1PA2|LINE|L1 61127 NM_014790 9832 Hs.740461 NM_014790 HPRD:11090 JAKMIP2 JAMIP2|NECC1 janus kinase and microtubule interacting protein 2 protein-coding 13-PTNLD9-TUMOR_peak_10944 chr11 94470623 94470723 + 7.63623 NA Intergenic MIRb|SINE|MIR -30835 NM_001301007 154810 Hs.503594 NM_130847 HPRD:12451 AMOTL1 JEAP angiomotin like 1 protein-coding 13-PTNLD9-TUMOR_peak_25195 chr19 47128581 47128835 + 7.63623 NA promoter-TSS (NM_000960) promoter-TSS (NM_000960) -354 NM_000960 5739 Hs.458324 NM_000960 HPRD:08959 PTGIR IP|PRIPR prostaglandin I2 (prostacyclin) receptor (IP) protein-coding 13-PTNLD9-TUMOR_peak_13377 chr12 76425401 76425580 + 7.63623 NA promoter-TSS (NM_007350) promoter-TSS (NM_007350) 66 NM_007350 22822 Hs.602085 NM_007350 PHLDA1 DT1P1B11|PHRIP|TDAG51 pleckstrin homology-like domain, family A, member 1 protein-coding 13-PTNLD9-TUMOR_peak_958 chr1 32166744 32167270 + 7.63623 NA intron (NM_001856, intron 2 of 70) intron (NM_001856, intron 2 of 70) 2761 NM_001856 1307 Hs.368921 NM_001856 HPRD:00381 COL16A1 447AA collagen, type XVI, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_19068 chr16 31226664 31226852 + 7.63623 NA TTS (NM_152901) TTS (NM_152901) 1416 NM_001008274 493829 Hs.661859 NM_001008274 HPRD:17412 TRIM72 MG53 tripartite motif containing 72, E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_3525 chr1 149859072 149859211 + 7.63550 NA promoter-TSS (NM_003528) promoter-TSS (NM_003528) 325 NM_175065 317772 Hs.664173 NM_175065 HPRD:13659 HIST2H2AB H2AB histone cluster 2, H2ab protein-coding 13-PTNLD9-TUMOR_peak_32404 chr21 43188739 43188966 + 7.63468 NA Intergenic Intergenic -1603 NM_020639 54101 Hs.517310 NM_020639 HPRD:10419 RIPK4 ANKK2|ANKRD3|DIK|NKRD3|PKK|PPS2|RIP4 receptor-interacting serine-threonine kinase 4 protein-coding 13-PTNLD9-TUMOR_peak_35371 chr3 112095888 112096143 + 7.63468 NA Intergenic L2|LINE|L2 44099 NM_005944 4345 Hs.79015 NM_005944 ENSG00000091972 CD200 MOX1|MOX2|MRC|OX-2 CD200 molecule protein-coding 13-PTNLD9-TUMOR_peak_1303 chr1 40770760 40770910 + 7.63468 NA intron (NM_001852, intron 21 of 31) AluYc|SINE|Alu 12104 NM_001852 1298 Hs.418012 NM_001852 HPRD:00373 COL9A2 DJ39G22.4|EDM2|MED|STL5 collagen, type IX, alpha 2 protein-coding 13-PTNLD9-TUMOR_peak_54393 chr9 111881750 111881947 + 7.63468 NA exon (NM_032012, exon 1 of 18) exon (NM_032012, exon 1 of 18) 377 NM_032012 23731 Hs.308074 NM_032012 HPRD:09866 TMEM245 C9orf5|CG-2|CG2 transmembrane protein 245 protein-coding 13-PTNLD9-TUMOR_peak_15097 chr13 110438903 110439023 + 7.63468 NA promoter-TSS (NM_003749) promoter-TSS (NM_003749) -49 NM_003749 8660 Hs.442344 NM_003749 HPRD:02878 IRS2 IRS-2 insulin receptor substrate 2 protein-coding 13-PTNLD9-TUMOR_peak_33785 chr3 11860740 11860992 + 7.63468 NA intron (NM_001284401, intron 4 of 7) MIR|SINE|MIR 27527 NM_138807 132001 Hs.475472 NM_138807 HPRD:14452 TAMM41 C3orf31|RAM41|TAM41 TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_23600 chr19 1102465 1102649 + 7.62667 NA Intergenic Intergenic -1368 NM_001039847 2879 Hs.433951 NM_002085 HPRD:11819 GPX4 GPx-4|GSHPx-4|MCSP|PHGPx|snGPx|snPHGPx glutathione peroxidase 4 protein-coding 13-PTNLD9-TUMOR_peak_15212 chr14 19795938 19796122 + 7.62667 NA Intergenic MER4B-int|LTR|ERV1 -98339 NR_073459 414763 Hs.617315 NR_073459 ENSG00000215394 BMS1P18 C14orf17|LINC00516 BMS1 pseudogene 18 pseudo 13-PTNLD9-TUMOR_peak_7135 chr10 43136344 43136638 + 7.62667 NA Intergenic LTR10B1|LTR|ERV1 -2499 NM_006955 7582 Hs.732284 NM_006955 HPRD:01912 ZNF33B KOX2|KOX31|ZNF11B zinc finger protein 33B protein-coding 13-PTNLD9-TUMOR_peak_23499 chr18 74813978 74814102 + 7.62667 NA intron (NM_001025101, intron 2 of 8) intron (NM_001025101, intron 2 of 8) 30734 NM_001025100 4155 Hs.551713 NM_002385 HPRD:01158 MBP - myelin basic protein protein-coding 13-PTNLD9-TUMOR_peak_21121 chr17 41434505 41434738 + 7.62667 NA Intergenic PRIMA41-int|LTR|ERV1 31645 NR_027412 100130581 Hs.546897 NR_027412 ENSG00000188825 LINC00910 - long intergenic non-protein coding RNA 910 ncRNA 13-PTNLD9-TUMOR_peak_48917 chr7 126443266 126443361 + 7.62298 NA intron (NR_028041, intron 5 of 10) intron (NR_028041, intron 5 of 10) 254925 NR_030323 693177 NR_030323 MIR592 MIRN592|hsa-mir-592 microRNA 592 ncRNA 13-PTNLD9-TUMOR_peak_48158 chr7 80928732 80928905 + 7.62298 NA Intergenic Intergenic -380151 NM_006379 10512 Hs.269109 NM_006379 HPRD:04034 SEMA3C SEMAE|SemE sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C protein-coding 13-PTNLD9-TUMOR_peak_29272 chr2 183165489 183165622 + 7.62298 NA intron (NM_001003683, intron 2 of 14) ERVL-E-int|LTR|ERVL -58765 NM_001258314 5136 Hs.191046 NM_005019 HPRD:01387 PDE1A CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A, calmodulin-dependent protein-coding 13-PTNLD9-TUMOR_peak_15129 chr13 111868726 111868904 + 7.62298 NA intron (NM_001113511, intron 5 of 19) intron (NM_001113511, intron 5 of 19) 29642 NM_001113513 8874 Hs.508738 NM_003899 HPRD:05688 ARHGEF7 BETA-PIX|COOL-1|COOL1|Nbla10314|P50|P50BP|P85|P85COOL1|P85SPR|PAK3|PIXB Rho guanine nucleotide exchange factor (GEF) 7 protein-coding 13-PTNLD9-TUMOR_peak_3989 chr1 157339829 157339923 + 7.62298 NA Intergenic Intergenic 182434 NM_031281 83416 Hs.415950 NM_031281 HPRD:16169 FCRL5 BXMAS1|CD307|CD307e|FCRH5|IRTA2|PRO820 Fc receptor-like 5 protein-coding 13-PTNLD9-TUMOR_peak_20807 chr17 28927651 28927796 + 7.62298 NA intron (NR_015341, intron 2 of 8) CpG -23613 NR_033420 6459 Hs.684860 NR_033420 SH3GL1P2 CNSA-P2|SH3GLP2 SH3-domain GRB2-like 1 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_50496 chr8 29356542 29356814 + 7.62298 NA Intergenic Intergenic -148411 NM_001394 1846 Hs.417962 NM_001394 HPRD:04123 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 13-PTNLD9-TUMOR_peak_47537 chr7 55323274 55323378 + 7.62298 NA promoter-TSS (NR_110426) promoter-TSS (NR_110426) 2 NR_110426 102725541 Hs.590524 NR_110426 ELDR Fabl|LINC01156 EGFR long non-coding downstream RNA ncRNA 13-PTNLD9-TUMOR_peak_38637 chr4 77561536 77561660 + 7.62298 NA intron (NM_020859, intron 2 of 10) intron (NM_020859, intron 2 of 10) 66877 NR_039654 100616299 NR_039654 MIR4450 - microRNA 4450 ncRNA 13-PTNLD9-TUMOR_peak_17905 chr15 86329472 86329587 + 7.62298 NA intron (NM_022480, intron 1 of 2) intron (NM_022480, intron 1 of 2) 8660 NM_022480 64410 Hs.498371 NM_022480 HPRD:07780 KLHL25 ENC-2|ENC2 kelch-like family member 25 protein-coding 13-PTNLD9-TUMOR_peak_56490 chrX 130713165 130713261 + 7.62298 NA Intergenic L1PA2|LINE|L1 35165 NM_001004486 347468 Hs.553711 NM_001004486 HPRD:18600 OR13H1 ORX1 olfactory receptor, family 13, subfamily H, member 1 protein-coding 13-PTNLD9-TUMOR_peak_37126 chr3 187704428 187704610 + 7.62298 NA Intergenic Intergenic -167142 NM_001167672 4026 Hs.720220 NM_005578 HPRD:02828 LPP - LIM domain containing preferred translocation partner in lipoma protein-coding 13-PTNLD9-TUMOR_peak_7682 chr10 73357746 73357914 + 7.62298 NA intron (NM_001171930, intron 9 of 30) intron (NM_001171930, intron 9 of 30) -86153 NR_120672 102723377 Hs.568789 NR_120672 LOC102723377 - uncharacterized LOC102723377 ncRNA 13-PTNLD9-TUMOR_peak_31234 chr20 44884049 44884317 + 7.62298 NA intron (NM_021248, intron 1 of 11) intron (NM_021248, intron 1 of 11) 52954 NM_021248 64405 Hs.472861 NM_021248 HPRD:13018 CDH22 C20orf25|dJ998H6.1 cadherin 22, type 2 protein-coding 13-PTNLD9-TUMOR_peak_51730 chr8 120007657 120007844 + 7.62298 NA Intergenic MIR3|SINE|MIR -43367 NM_002546 4982 Hs.81791 NM_002546 HPRD:04032 TNFRSF11B OCIF|OPG|TR1 tumor necrosis factor receptor superfamily, member 11b protein-coding 13-PTNLD9-TUMOR_peak_46502 chr6 165200941 165201043 + 7.62298 NA Intergenic L1PA5|LINE|L1 522119 NM_144980 168090 Hs.144734 NM_144980 HPRD:12844 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 13-PTNLD9-TUMOR_peak_54352 chr9 110495097 110495328 + 7.62298 NA Intergenic Intergenic -243165 NM_004235 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel-like factor 4 (gut) protein-coding 13-PTNLD9-TUMOR_peak_35316 chr3 111309097 111309274 + 7.62060 NA intron (NM_198196, intron 6 of 14) intron (NM_198196, intron 6 of 14) 4997 NM_024508 79413 Hs.136912 NM_024508 HPRD:15686 ZBED2 - zinc finger, BED-type containing 2 protein-coding 13-PTNLD9-TUMOR_peak_9742 chr11 47789947 47790094 + 7.62060 NA Intergenic Intergenic -1027 NM_015308 23360 Hs.6834 NM_015308 HPRD:10996 FNBP4 FBP30 formin binding protein 4 protein-coding 13-PTNLD9-TUMOR_peak_27695 chr2 96101710 96101811 + 7.62060 NA Intergenic Intergenic 33312 NM_016044 51011 Hs.531247 NM_016044 HPRD:13287 FAHD2A - fumarylacetoacetate hydrolase domain containing 2A protein-coding 13-PTNLD9-TUMOR_peak_12813 chr12 52588917 52589411 + 7.62060 NA Intergenic Intergenic -3380 NM_001081492 144501 Hs.140978 NM_182507 HPRD:14068 KRT80 KB20 keratin 80 protein-coding 13-PTNLD9-TUMOR_peak_50733 chr8 42054768 42055001 + 7.61917 NA intron (NM_000930, intron 1 of 13) intron (NM_000930, intron 1 of 13) 10310 NM_033011 5327 Hs.491582 NM_000930 HPRD:01419 PLAT T-PA|TPA plasminogen activator, tissue protein-coding 13-PTNLD9-TUMOR_peak_3384 chr1 147141657 147141793 + 7.61831 NA intron (NM_016361, intron 1 of 9) intron (NM_016361, intron 1 of 9) 909 NM_016361 51205 Hs.562154 NM_016361 ACP6 ACPL1|LPAP|PACPL1 acid phosphatase 6, lysophosphatidic protein-coding 13-PTNLD9-TUMOR_peak_16846 chr15 27366638 27366795 + 7.60877 NA intron (NM_033223, intron 3 of 9) intron (NM_033223, intron 3 of 9) 39750 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 LOC101928869 - uncharacterized LOC101928869 ncRNA 13-PTNLD9-TUMOR_peak_4715 chr1 183578523 183578656 + 7.60877 NA Intergenic Intergenic -18533 NM_001127651 4688 Hs.587558 NM_000433 HPRD:01991 NCF2 NCF-2|NOXA2|P67-PHOX|P67PHOX neutrophil cytosolic factor 2 protein-coding 13-PTNLD9-TUMOR_peak_11931 chr12 6054013 6054129 + 7.60877 NA intron (NM_001278597, intron 1 of 25) intron (NM_001278597, intron 1 of 25) 354 NM_001278596 57101 Hs.148970 NM_020373 HPRD:11634 ANO2 C12orf3|TMEM16B anoctamin 2, calcium activated chloride channel protein-coding 13-PTNLD9-TUMOR_peak_49798 chr7 155374126 155374254 + 7.60877 NA Intergenic Intergenic -47651 NM_001103176 285888 Hs.146751 NM_001103176 ENSG00000146910 CNPY1 - canopy FGF signaling regulator 1 protein-coding 13-PTNLD9-TUMOR_peak_5612 chr1 225843247 225843419 + 7.60599 NA Intergenic Intergenic -2488 NM_018212 55740 Hs.497893 NM_018212 HPRD:12360 ENAH ENA|MENA|NDPP1 enabled homolog (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_22483 chr18 3650723 3651017 + 7.60599 NA intron (NM_001242764, intron 4 of 9) AluSc5|SINE|Alu 47135 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_34750 chr3 57738219 57738338 + 7.60599 NA Intergenic Intergenic -4896 NM_007159 7871 Hs.476432 NM_007159 HPRD:04079 SLMAP SLAP sarcolemma associated protein protein-coding 13-PTNLD9-TUMOR_peak_24011 chr19 11593413 11593625 + 7.60599 NA TTS (NM_138783) TTS (NM_138783) -1716 NM_001420 1995 Hs.1701 NM_001420 HPRD:16024 ELAVL3 HUC|HUCL|PLE21 ELAV like neuron-specific RNA binding protein 3 protein-coding 13-PTNLD9-TUMOR_peak_3679 chr1 152413474 152413574 + 7.60435 NA Intergenic Intergenic -26774 NM_016190 49860 Hs.242057 NM_016190 HPRD:12720 CRNN C1orf10|DRC1|PDRC1|SEP53 cornulin protein-coding 13-PTNLD9-TUMOR_peak_43630 chr6 6467301 6467488 + 7.60207 NA intron (NR_026970, intron 3 of 7) intron (NR_026970, intron 3 of 7) -121540 NM_004271 9450 Hs.653138 NM_004271 LY86 MD-1|MMD-1|dJ80N2.1 lymphocyte antigen 86 protein-coding 13-PTNLD9-TUMOR_peak_24785 chr19 36264473 36264586 + 7.60207 NA Intergenic L2a|LINE|L2 -1888 NM_001172630 115703 Hs.515364 NM_052948 HPRD:15415 ARHGAP33 NOMA-GAP|SNX26|TCGAP Rho GTPase activating protein 33 protein-coding 13-PTNLD9-TUMOR_peak_43150 chr5 175594961 175595147 + 7.60207 NA intron (NR_036494, intron 15 of 25) L1MC4|LINE|L1 31244 NR_036494 643201 Hs.390285 NR_036494 ENSG00000248596 LOC643201 - centrosomal protein 192kDa pseudogene pseudo 13-PTNLD9-TUMOR_peak_33280 chr22 39410100 39410343 + 7.60207 NA promoter-TSS (NM_014508) promoter-TSS (NM_014508) -44 NM_014508 27350 Hs.441124 NM_014508 APOBEC3C A3C|APOBEC1L|ARDC2|ARDC4|ARP5|PBI|bK150C2.3 apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C protein-coding 13-PTNLD9-TUMOR_peak_43999 chr6 18016967 18017208 + 7.60207 NA Intergenic Intergenic -29233 NM_001243423 63971 Hs.94499 NM_022113 HPRD:09256 KIF13A RBKIN|bA500C11.2 kinesin family member 13A protein-coding 13-PTNLD9-TUMOR_peak_14333 chr12 132131102 132131354 + 7.60207 NA Intergenic Intergenic -64404 NM_004592 6433 Hs.308171 NM_004592 HPRD:09055 SFSWAP SFRS8|SWAP splicing factor, suppressor of white-apricot family protein-coding 13-PTNLD9-TUMOR_peak_50870 chr8 48392191 48392312 + 7.60207 NA intron (NR_104581, intron 6 of 16) L4|LINE|RTE 218781 NM_001080394 23514 Hs.381058 NM_001080394 ENSG00000164808 SPIDR KIAA0146 scaffolding protein involved in DNA repair protein-coding 13-PTNLD9-TUMOR_peak_22879 chr18 29598558 29598751 + 7.60207 NA 5' UTR (NM_017831, exon 1 of 6) 5' UTR (NM_017831, exon 1 of 6) 209 NM_017831 54941 Hs.633703 NM_017831 HPRD:11500 RNF125 TRAC-1|TRAC1 ring finger protein 125, E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_52435 chr8 144544684 144544800 + 7.60207 NA intron (NM_015117, intron 9 of 11) intron (NM_015117, intron 9 of 11) -32140 NM_201589 389692 Hs.521914 NM_201589 HPRD:14346 MAFA RIPE3b1|hMafA v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog A protein-coding 13-PTNLD9-TUMOR_peak_47304 chr7 42276832 42277004 + 7.60207 NA promoter-TSS (NM_000168) promoter-TSS (NM_000168) -300 NM_000168 2737 Hs.21509 NM_000168 HPRD:01313 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 13-PTNLD9-TUMOR_peak_32347 chr21 40427351 40427609 + 7.60207 NA Intergenic Intergenic -77780 NR_109962 101928435 Hs.385528 NR_109962 ENSG00000232837 LOC101928435 - uncharacterized LOC101928435 ncRNA 13-PTNLD9-TUMOR_peak_33638 chr3 8412801 8413107 + 7.60207 NA intron (NR_033378, intron 3 of 3) intron (NR_033378, intron 3 of 3) 130390 NR_033378 100288428 Hs.651576 NR_033378 ENSG00000227110 LMCD1-AS1 - LMCD1 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_30129 chr2 239016314 239016438 + 7.60207 NA intron (NM_194312, intron 3 of 8) intron (NM_194312, intron 3 of 8) 7425 NM_194312 339768 Hs.127724 NM_194312 HPRD:14170 ESPNL - espin-like protein-coding 13-PTNLD9-TUMOR_peak_45310 chr6 52794197 52794397 + 7.60207 NA Intergenic MIRb|SINE|MIR -19801 NM_000847 2940 Hs.102484 NM_000847 HPRD:07290 GSTA3 GSTA3-3|GTA3 glutathione S-transferase alpha 3 protein-coding 13-PTNLD9-TUMOR_peak_56106 chrX 70763167 70763549 + 7.60207 NA intron (NM_181673, intron 3 of 21) intron (NM_181673, intron 3 of 21) 10446 NM_181672 8473 Hs.405410 NM_003605 HPRD:02222 OGT HRNT1|O-GLCNAC O-linked N-acetylglucosamine (GlcNAc) transferase protein-coding 13-PTNLD9-TUMOR_peak_681 chr1 24117399 24117681 + 7.60207 NA promoter-TSS (NM_007260) promoter-TSS (NM_007260) -106 NM_007260 11313 Hs.533479 NM_007260 HPRD:07127 LYPLA2 APT-2|DJ886K2.4 lysophospholipase II protein-coding 13-PTNLD9-TUMOR_peak_42169 chr5 134996584 134996715 + 7.60207 NA Intergenic Intergenic -7025 NR_027127 340074 Hs.434633 NR_027127 ENSG00000251045 LOC340074 - uncharacterized LOC340074 ncRNA 13-PTNLD9-TUMOR_peak_39494 chr4 142309724 142309968 + 7.60207 NA Intergenic L1MEa|LINE|L1 -56075 NR_121625 100507639 Hs.535010 NR_121625 ENSG00000248810 LOC100507639 - uncharacterized LOC100507639 ncRNA 13-PTNLD9-TUMOR_peak_25579 chr19 53494887 53495060 + 7.60207 NA intron (NR_003578, intron 1 of 3) intron (NR_003578, intron 1 of 3) 1811 NR_003578 79986 Hs.714428 NM_024924 HPRD:07806 ZNF702P ZNF702 zinc finger protein 702, pseudogene pseudo 13-PTNLD9-TUMOR_peak_616 chr1 21348840 21349007 + 7.60207 NA intron (NM_001198802, intron 4 of 34) intron (NM_001198802, intron 4 of 34) 88953 NM_003760 8672 Hs.467084 NM_003760 HPRD:06802 EIF4G3 eIF-4G 3|eIF4G 3|eIF4GII eukaryotic translation initiation factor 4 gamma, 3 protein-coding 13-PTNLD9-TUMOR_peak_9219 chr11 17530016 17530110 + 7.60207 NA intron (NM_153676, intron 18 of 26) intron (NM_153676, intron 18 of 26) -31671 NM_000352 6833 Hs.54470 NM_000352 HPRD:02741 ABCC8 ABC36|HHF1|HI|HRINS|MRP8|PHHI|SUR|SUR1|SUR1delta2|TNDM2 ATP-binding cassette, sub-family C (CFTR/MRP), member 8 protein-coding 13-PTNLD9-TUMOR_peak_54083 chr9 97780774 97780947 + 7.60207 NA intron (NM_032823, intron 11 of 14) intron (NM_032823, intron 11 of 14) -46772 NR_106729 102466518 NR_106729 MIR6081 hsa-mir-6081 microRNA 6081 ncRNA 13-PTNLD9-TUMOR_peak_37689 chr4 3895480 3895593 + 7.60207 NA Intergenic HERVE-int|LTR|ERV1 61612 NR_024253 348926 Hs.591720 NR_024253 FAM86EP - family with sequence similarity 86, member A pseudogene pseudo 13-PTNLD9-TUMOR_peak_20249 chr17 2289818 2289975 + 7.60207 NA 3' UTR (NM_020310, exon 6 of 6) 3' UTR (NM_020310, exon 6 of 6) 14362 NM_020310 4335 Hs.626579 NM_020310 HPRD:04331 MNT MAD6|MXD6|ROX|bHLHd3 MAX network transcriptional repressor protein-coding 13-PTNLD9-TUMOR_peak_1925 chr1 57960545 57960734 + 7.60207 NA intron (NM_021080, intron 3 of 16) L3|LINE|CR1 -365576 NR_104363 101926890 Hs.662207 NR_104362 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_3792 chr1 154519034 154519129 + 7.60207 NA intron (NM_182499, intron 11 of 12) intron (NM_182499, intron 11 of 12) 12039 NM_017582 55585 Hs.607928 NM_017582 HPRD:15601 UBE2Q1 GTAP|NICE-5|UBE2Q ubiquitin-conjugating enzyme E2Q family member 1 protein-coding 13-PTNLD9-TUMOR_peak_26888 chr2 48647843 48648097 + 7.60207 NA Intergenic Intergenic -19938 NM_001135629 129285 Hs.654619 NM_152994 HPRD:17294 PPP1R21 CCDC128|KLRAQ1 protein phosphatase 1, regulatory subunit 21 protein-coding 13-PTNLD9-TUMOR_peak_3112 chr1 120837736 120837863 + 7.60121 NA Intergenic CpG -1206 NM_001100910 653820 Hs.339665 NM_001100910 ENSG00000188610 FAM72B p17 family with sequence similarity 72, member B protein-coding 13-PTNLD9-TUMOR_peak_36570 chr3 159480828 159481116 + 7.59917 NA intron (NM_001197108, intron 1 of 6) CpG 5429 NR_121669 100874433 Hs.601476 NR_121669 IQCJ-SCHIP1-AS1 uaz98 IQCJ-SCHIP1 readthrough antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_3269 chr1 145059083 145059188 + 7.59581 NA intron (NM_022359, intron 1 of 6) intron (NM_022359, intron 1 of 6) 17051 NM_022359 9659 Hs.584841 NM_014644 HPRD:10482 PDE4DIP CMYA2|MMGL phosphodiesterase 4D interacting protein protein-coding 13-PTNLD9-TUMOR_peak_50095 chr8 12046159 12046263 + 7.59439 NA intron (NM_001083537, intron 3 of 6) intron (NM_001083537, intron 3 of 6) 5413 NR_003494 85002 Hs.675799 NM_001083537 HPRD:17515 FAM86B1 - family with sequence similarity 86, member B1 protein-coding 13-PTNLD9-TUMOR_peak_18836 chr16 25118310 25118599 + 7.59439 NA intron (NR_120306, intron 1 of 2) CpG 4422 NR_120306 102723510 Hs.569596 NR_120306 LCMT1-AS1 - LCMT1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_25808 chr19 58791458 58791593 + 7.59439 NA intron (NM_021089, intron 1 of 3) MLT1F|LTR|ERVL-MaLR 1207 NM_021089 7554 Hs.590941 NM_021089 HPRD:01919 ZNF8 HF.18|Zfp128 zinc finger protein 8 protein-coding 13-PTNLD9-TUMOR_peak_22040 chr17 73906204 73906370 + 7.59439 NA TTS (NM_001080542) TTS (NM_001080542) -5106 NM_032478 64978 Hs.442609 NM_032478 HPRD:14758 MRPL38 L38MT|MRP-L3|MRP-L38|RPML3 mitochondrial ribosomal protein L38 protein-coding 13-PTNLD9-TUMOR_peak_2889 chr1 113259014 113259125 + 7.59439 NA Intergenic Intergenic -1119 NM_005167 333926 Hs.655231 NM_005167 HPRD:15171 PPM1J PP2CZ|PP2Czeta|PPP2CZ protein phosphatase, Mg2+/Mn2+ dependent, 1J protein-coding 13-PTNLD9-TUMOR_peak_30186 chr2 241505245 241505381 + 7.59439 NA Intergenic Intergenic -2691 NM_018226 57140 Hs.5345 NM_018226 RNPEPL1 - arginyl aminopeptidase (aminopeptidase B)-like 1 protein-coding 13-PTNLD9-TUMOR_peak_49830 chr7 157071912 157072256 + 7.59346 NA Intergenic CpG -57626 NM_005494 10049 Hs.490745 NM_005494 HPRD:07107 DNAJB6 DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|MRJ|MSJ-1 DnaJ (Hsp40) homolog, subfamily B, member 6 protein-coding 13-PTNLD9-TUMOR_peak_43910 chr6 15502343 15502483 + 7.59346 NA intron (NM_001267040, intron 8 of 17) intron (NM_001267040, intron 8 of 17) 160876 NR_036448 84062 Hs.571148 NM_032122 HPRD:06190 DTNBP1 BLOC1S8|DBND|HPS7|My031|SDY dystrobrevin binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_28361 chr2 127841651 127841928 + 7.59346 NA intron (NM_139343, intron 1 of 18) MER5A1|DNA|hAT-Charlie 23114 NM_139343 274 Hs.193163 NM_004305 HPRD:03150 BIN1 AMPH2|AMPHL|SH3P9 bridging integrator 1 protein-coding 13-PTNLD9-TUMOR_peak_8914 chr11 6341668 6341835 + 7.59346 NA promoter-TSS (NM_145040) promoter-TSS (NM_145040) -11 NM_145040 112464 Hs.434044 NM_145040 HPRD:17908 PRKCDBP CAVIN3|HSRBC|SRBC|cavin-3 protein kinase C, delta binding protein protein-coding 13-PTNLD9-TUMOR_peak_1004 chr1 33169186 33169322 + 7.59346 NA promoter-TSS (NM_030786) promoter-TSS (NM_030786) -893 NM_030786 81493 Hs.712631 NM_030786 HPRD:18134 SYNC SYNC1|SYNCOILIN syncoilin, intermediate filament protein protein-coding 13-PTNLD9-TUMOR_peak_31723 chr20 57582274 57582377 + 7.59346 NA promoter-TSS (NM_001336) promoter-TSS (NM_001336) -16 NM_001336 1522 Hs.252549 NM_001336 HPRD:04410 CTSZ CTSX cathepsin Z protein-coding 13-PTNLD9-TUMOR_peak_27924 chr2 106673783 106673997 + 7.58457 NA Intergenic Intergenic -8223 NM_032411 84417 Hs.43125 NM_032411 HPRD:13261 C2orf40 ECRG4 chromosome 2 open reading frame 40 protein-coding 13-PTNLD9-TUMOR_peak_21656 chr17 57831994 57832115 + 7.58457 NA intron (NM_030938, intron 5 of 11) intron (NM_030938, intron 5 of 11) 47191 NM_030938 81671 Hs.444569 NM_030938 HPRD:15649 VMP1 EPG3|TANGO5|TMEM49 vacuole membrane protein 1 protein-coding 13-PTNLD9-TUMOR_peak_36534 chr3 157502978 157503086 + 7.58457 NA Intergenic Intergenic 241899 NM_001130002 152078 Hs.259046 NM_001099777 ENSG00000174899 C3orf55 - chromosome 3 open reading frame 55 protein-coding 13-PTNLD9-TUMOR_peak_14071 chr12 121342177 121342294 + 7.58457 NA promoter-TSS (NM_139015) promoter-TSS (NM_139015) -80 NM_139015 121665 Hs.507087 NM_139015 HPRD:09744 SPPL3 IMP2|MDHV1887|PRO4332|PSH1|PSL4 signal peptide peptidase like 3 protein-coding 13-PTNLD9-TUMOR_peak_55704 chrX 34675356 34675603 + 7.58457 NA promoter-TSS (NM_031442) promoter-TSS (NM_031442) -74 NM_031442 83604 Hs.8769 NM_031442 HPRD:06741 TMEM47 BCMP1|TM4SF10 transmembrane protein 47 protein-coding 13-PTNLD9-TUMOR_peak_53600 chr9 73440453 73440650 + 7.58457 NA intron (NM_001007470, intron 6 of 7) intron (NM_001007470, intron 6 of 7) -15551 NR_029621 406987 NR_029621 MIR204 MIRN204|miRNA204 microRNA 204 ncRNA 13-PTNLD9-TUMOR_peak_28899 chr2 161350231 161350499 + 7.58457 NA promoter-TSS (NM_002897) promoter-TSS (NM_002897) -47 NM_002897 5937 Hs.470412 NM_002897 HPRD:03814 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif, single stranded interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_34609 chr3 50612838 50613011 + 7.58457 NA intron (NM_016173, intron 4 of 10) L2b|LINE|L2 -4466 NM_001171741 51161 Hs.517860 NM_016210 HPRD:16654 C3orf18 G20 chromosome 3 open reading frame 18 protein-coding 13-PTNLD9-TUMOR_peak_10596 chr11 73463603 73463869 + 7.58457 NA intron (NM_198896, intron 1 of 7) AluSx|SINE|Alu 7402 NM_001243719 5870 Hs.503222 NM_002869 HPRD:01543 RAB6A RAB6 RAB6A, member RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_1034 chr1 33815970 33816121 + 7.58457 NA promoter-TSS (NM_004427) promoter-TSS (NM_004427) -546 NM_004427 1912 Hs.524271 NM_004427 HPRD:10340 PHC2 EDR2|HPH2|PH2 polyhomeotic homolog 2 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_52766 chr9 14238150 14238288 + 7.58457 NA intron (NM_005596, intron 2 of 8) L2a|LINE|L2 -57418 NM_001282787 4781 Hs.644095 NM_005596 HPRD:09008 NFIB CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I/B protein-coding 13-PTNLD9-TUMOR_peak_463 chr1 12859190 12859337 + 7.58457 NA Intergenic MER52D|LTR|ERV1 4420 NM_001294139 65121 Hs.454859 NM_023013 HPRD:11272 PRAMEF1 - PRAME family member 1 protein-coding 13-PTNLD9-TUMOR_peak_34814 chr3 62593540 62593693 + 7.58457 NA intron (NM_183393, intron 6 of 26) intron (NM_183393, intron 6 of 26) -234426 NM_018008 55079 Hs.241523 NM_018008 HPRD:07596 FEZF2 FEZ|FEZL|TOF|ZFP312|ZNF312 FEZ family zinc finger 2 protein-coding 13-PTNLD9-TUMOR_peak_10976 chr11 95658265 95658434 + 7.58457 NA promoter-TSS (NM_201278) promoter-TSS (NM_201278) -978 NM_016156 8898 Hs.181326 NM_016156 HPRD:04650 MTMR2 CMT4B|CMT4B1 myotubularin related protein 2 protein-coding 13-PTNLD9-TUMOR_peak_25260 chr19 48201405 48201595 + 7.58457 NA intron (NM_015711, intron 11 of 14) intron (NM_015711, intron 11 of 14) -15101 NM_014601 30846 Hs.744963 NM_014601 HPRD:10434 EHD2 PAST2 EH-domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_30069 chr2 235336465 235336631 + 7.58457 NA Intergenic Intergenic 69145 NM_005737 10123 Hs.111554 NM_005737 HPRD:11988 ARL4C ARL7|LAK ADP-ribosylation factor-like 4C protein-coding 13-PTNLD9-TUMOR_peak_42616 chr5 149541298 149541404 + 7.58457 NA Intergenic Intergenic -4993 NM_001804 1044 Hs.1545 NM_001804 HPRD:02849 CDX1 - caudal type homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_31619 chr20 54522799 54523048 + 7.58457 NA Intergenic Intergenic 57605 NM_080617 140689 Hs.126141 NM_080617 HPRD:16685 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 13-PTNLD9-TUMOR_peak_48098 chr7 77092982 77093197 + 7.58457 NA Intergenic L2c|LINE|L2 -47372 NM_017439 54103 Hs.186649 NM_017439 HPRD:18671 GSAP PION gamma-secretase activating protein protein-coding 13-PTNLD9-TUMOR_peak_37859 chr4 7974460 7974722 + 7.58229 NA intron (NM_001130085, intron 17 of 17) intron (NM_001130085, intron 17 of 17) -32938 NM_001134647 60312 Hs.529369 NM_021638 HPRD:09747 AFAP1 AFAP|AFAP-110|AFAP110 actin filament associated protein 1 protein-coding 13-PTNLD9-TUMOR_peak_24363 chr19 18043761 18043857 + 7.57890 NA promoter-TSS (NM_001136203) promoter-TSS (NM_001136203) -15 NM_001136203 115098 Hs.100043 NM_138442 HPRD:14008 CCDC124 - coiled-coil domain containing 124 protein-coding 13-PTNLD9-TUMOR_peak_9674 chr11 45879768 45879981 + 7.57819 NA intron (NM_001127457, intron 2 of 11) intron (NM_001127457, intron 2 of 11) 10917 NM_021117 1408 Hs.532491 NM_021117 HPRD:07226 CRY2 HCRY2|PHLL2 cryptochrome circadian clock 2 protein-coding 13-PTNLD9-TUMOR_peak_10991 chr11 95976826 95976945 + 7.57819 NA intron (NM_032427, intron 1 of 4) AluY|SINE|Alu -97717 NR_036125 100422991 NR_036125 miRBase:MI0014197 MIR1260B - microRNA 1260b ncRNA 13-PTNLD9-TUMOR_peak_8805 chr11 2114235 2114577 + 7.57819 NA Intergenic Intergenic 41033 NR_030158 619552 NR_030158 MIR483 MIRN483|hsa-mir-483 microRNA 483 ncRNA 13-PTNLD9-TUMOR_peak_46614 chr7 70358 70459 + 7.57819 NA Intergenic L2c|LINE|L2 -79310 NR_108065 100507642 Hs.557780 NR_108064 LOC100507642 - uncharacterized LOC100507642 ncRNA 13-PTNLD9-TUMOR_peak_44685 chr6 33538651 33538845 + 7.57819 NA Intergenic Charlie13a|DNA|hAT-Charlie 9322 NM_001188 578 Hs.485139 NM_001188 HPRD:02744 BAK1 BAK|BAK-LIKE|BCL2L7|CDN1 BCL2-antagonist/killer 1 protein-coding 13-PTNLD9-TUMOR_peak_49733 chr7 152994328 152994512 + 7.56762 NA Intergenic Intergenic 114899 NR_125776 103724390 Hs.614280 NR_125776 LINC01287 TCONS_l2_00027522 long intergenic non-protein coding RNA 1287 ncRNA 13-PTNLD9-TUMOR_peak_50588 chr8 33429823 33430085 + 7.56762 NA Intergenic Intergenic -5308 NM_024787 79845 Hs.151237 NM_024787 HPRD:11498 RNF122 - ring finger protein 122 protein-coding 13-PTNLD9-TUMOR_peak_51654 chr8 117242588 117243072 + 7.56762 NA intron (NR_046215, intron 4 of 13) intron (NR_046215, intron 4 of 13) 94467 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 13-PTNLD9-TUMOR_peak_51983 chr8 128683186 128683299 + 7.56762 NA Intergenic Intergenic 62971 NR_117101 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility candidate 11 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_42481 chr5 145301762 145301874 + 7.56762 NA Intergenic L2c|LINE|L2 -14308 NM_152550 153769 Hs.443728 NM_152550 HPRD:10229 SH3RF2 HEPP1|POSHER|PPP1R39|RNF158 SH3 domain containing ring finger 2 protein-coding 13-PTNLD9-TUMOR_peak_28021 chr2 111112330 111112461 + 7.56762 NA Intergenic MSTB|LTR|ERVL-MaLR 29707 NR_046110 440894 Hs.516403 NR_046110 ENSG00000204588 LINC01123 - long intergenic non-protein coding RNA 1123 ncRNA 13-PTNLD9-TUMOR_peak_46025 chr6 126188673 126189116 + 7.56762 NA intron (NM_001122842, intron 3 of 15) intron (NM_001122842, intron 3 of 15) -51476 NM_001199622 135112 Hs.171426 NM_181782 HPRD:14814 NCOA7 ERAP140|ESNA1|NCOA7-AS|Nbla00052|Nbla10993|TLDC4|dJ187J11.3 nuclear receptor coactivator 7 protein-coding 13-PTNLD9-TUMOR_peak_1536 chr1 44950242 44950453 + 7.56762 NA intron (NM_018150, intron 2 of 14) intron (NM_018150, intron 2 of 14) -60818 NR_049849 100847089 NR_049849 MIR5584 - microRNA 5584 ncRNA 13-PTNLD9-TUMOR_peak_7221 chr10 46889161 46889378 + 7.56762 NA Intergenic AluJb|SINE|Alu -8372 NR_027632 414241 Hs.594331 NM_001098846 ENSG00000165874 FAM35BP FAM35B|FAM35EP|bA38L15.1 family with sequence similarity 35, member A pseudogene pseudo 13-PTNLD9-TUMOR_peak_31178 chr20 43969161 43969259 + 7.56082 NA intron (NM_002999, intron 1 of 4) intron (NM_002999, intron 1 of 4) 7854 NM_002999 6385 Hs.632267 NM_002999 HPRD:08366 SDC4 SYND4 syndecan 4 protein-coding 13-PTNLD9-TUMOR_peak_54890 chr9 132145945 132146214 + 7.55875 NA Intergenic CpG 46877 NR_120686 100506119 Hs.624047 NR_120685 LINC01503 - long intergenic non-protein coding RNA 1503 ncRNA 13-PTNLD9-TUMOR_peak_12336 chr12 26145411 26145634 + 7.55875 NA intron (NM_001164747, intron 1 of 5) L2c|LINE|L2 18834 NM_001164747 11228 Hs.696433 NM_007211 HPRD:07084 RASSF8 C12orf2|HOJ1 Ras association (RalGDS/AF-6) domain family (N-terminal) member 8 protein-coding 13-PTNLD9-TUMOR_peak_43561 chr6 3900432 3900659 + 7.55875 NA Intergenic LTR18B|LTR|ERVL 50913 NM_012135 26240 Hs.140944 NM_012135 HPRD:16883 FAM50B D6S2654E|X5L family with sequence similarity 50, member B protein-coding 13-PTNLD9-TUMOR_peak_7453 chr10 61147717 61147972 + 7.55875 NA Intergenic Intergenic -25183 NM_001143773 220965 Hs.607594 NM_198215 HPRD:16875 FAM13C FAM13C1 family with sequence similarity 13, member C protein-coding 13-PTNLD9-TUMOR_peak_17408 chr15 63031491 63031590 + 7.55875 NA intron (NM_015059, intron 27 of 55) intron (NM_015059, intron 27 of 55) -84616 NR_029709 406965 NR_029709 MIR190A MIR190|MIRN190|hsa-mir-190a|miR-190 microRNA 190a ncRNA 13-PTNLD9-TUMOR_peak_34195 chr3 32290220 32290349 + 7.55875 NA intron (NM_178868, intron 1 of 3) AluJr4|SINE|Alu 10113 NM_178868 152189 Hs.154986 NM_178868 HPRD:06989 CMTM8 CKLFSF8|CKLFSF8-V2 CKLF-like MARVEL transmembrane domain containing 8 protein-coding 13-PTNLD9-TUMOR_peak_47015 chr7 21168128 21168305 + 7.55875 NA Intergenic Intergenic -299473 NM_003112 6671 Hs.88013 NM_003112 HPRD:02764 SP4 HF1B|SPR-1 Sp4 transcription factor protein-coding 13-PTNLD9-TUMOR_peak_36101 chr3 138392646 138392763 + 7.55875 NA intron (NM_006219, intron 17 of 21) L1M4|LINE|L1 33759 NM_001256045 5291 Hs.239818 NM_006219 PIK3CB P110BETA|PI3K|PI3KBETA|PIK3C1 phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit beta protein-coding 13-PTNLD9-TUMOR_peak_39537 chr4 145741295 145741578 + 7.55875 NA Intergenic Intergenic -174265 NR_037595 646576 Hs.632595 NR_037595 ENSG00000248890 HHIP-AS1 - HHIP antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_6301 chr10 3330405 3330551 + 7.55875 NA Intergenic Intergenic -115445 NM_001242307 10531 Hs.528300 NM_014889 HPRD:07142 PITRM1 MP1|PreP pitrilysin metallopeptidase 1 protein-coding 13-PTNLD9-TUMOR_peak_26438 chr2 28807229 28807340 + 7.55875 NA intron (NM_001170585, intron 24 of 56) intron (NM_001170585, intron 24 of 56) 88346 NM_153021 151056 Hs.444933 NM_153021 HPRD:15141 PLB1 PLB|PLB/LIP|hPLB phospholipase B1 protein-coding 13-PTNLD9-TUMOR_peak_7622 chr10 71812506 71812638 + 7.55875 NA 5' UTR (NM_018649, exon 1 of 9) 5' UTR (NM_018649, exon 1 of 9) 215 NM_018649 55506 Hs.499953 NM_018649 HPRD:13625 H2AFY2 macroH2A2 H2A histone family, member Y2 protein-coding 13-PTNLD9-TUMOR_peak_55586 chrX 16964581 16964778 + 7.55875 NA promoter-TSS (NM_001080975) promoter-TSS (NM_001080975) -135 NM_004726 9185 Hs.186810 NM_004726 HPRD:02262 REPS2 POB1 RALBP1 associated Eps domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_9338 chr11 25724065 25724183 + 7.55875 NA Intergenic Intergenic -629554 NM_031418 63982 Hs.91791 NM_031418 HPRD:15526 ANO3 C11orf25|DYT23|DYT24|TMEM16C anoctamin 3 protein-coding 13-PTNLD9-TUMOR_peak_36017 chr3 134192836 134193000 + 7.55875 NA Intergenic Intergenic -11657 NM_001042384 80254 Hs.443301 NM_025180 HPRD:07826 CEP63 SCKL6 centrosomal protein 63kDa protein-coding 13-PTNLD9-TUMOR_peak_6387 chr10 6131605 6131796 + 7.55875 NA 5' UTR (NM_001145547, exon 1 of 12) 5' UTR (NM_001145547, exon 1 of 12) 391 NM_001145547 84991 Hs.498548 NM_032905 HPRD:09501 RBM17 SPF45 RNA binding motif protein 17 protein-coding 13-PTNLD9-TUMOR_peak_49988 chr8 6735432 6735665 + 7.55875 NA promoter-TSS (NM_005218) promoter-TSS (NM_005218) -19 NM_005218 1672 Hs.32949 NM_005218 HPRD:03634 DEFB1 BD1|DEFB-1|DEFB101|HBD1 defensin, beta 1 protein-coding 13-PTNLD9-TUMOR_peak_50448 chr8 27788992 27789116 + 7.55875 NA intron (NM_173833, intron 3 of 8) MER45C|DNA|hAT-Tip100 -45421 NR_036249 100422828 NR_036249 MIR4287 - microRNA 4287 ncRNA 13-PTNLD9-TUMOR_peak_52967 chr9 27588636 27588821 + 7.55875 NA Intergenic L1MC4a|LINE|L1 -14864 NM_001256054 203228 Hs.493639 NM_018325 HPRD:12975 C9orf72 ALSFTD|FTDALS chromosome 9 open reading frame 72 protein-coding 13-PTNLD9-TUMOR_peak_38530 chr4 67440717 67441090 + 7.55875 NA Intergenic LTR25|LTR|ERV1 846815 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 13-PTNLD9-TUMOR_peak_16409 chr14 89715614 89715812 + 7.55875 NA intron (NM_001085471, intron 4 of 6) intron (NM_001085471, intron 4 of 6) 167741 NM_005197 1112 Hs.434286 NM_005197 HPRD:07533 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 13-PTNLD9-TUMOR_peak_34605 chr3 50572314 50572588 + 7.55875 NA Intergenic MLT1K|LTR|ERVL-MaLR -30776 NM_001291101 9254 Hs.476273 NM_006030 HPRD:06154 CACNA2D2 CACNA2D calcium channel, voltage-dependent, alpha 2/delta subunit 2 protein-coding 13-PTNLD9-TUMOR_peak_42502 chr5 146083553 146083755 + 7.55875 NA intron (NM_001271899, intron 2 of 9) intron (NM_001271899, intron 2 of 9) 174694 NM_001271948 5521 Hs.627618 NM_181674 HPRD:05059 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2, regulatory subunit B, beta protein-coding 13-PTNLD9-TUMOR_peak_52639 chr9 2962549 2962748 + 7.55875 NA Intergenic Intergenic -118518 NM_014878 9933 Hs.493309 NM_014878 HPRD:08822 KIAA0020 HA-8|HLA-HA8|PEN|PUF6|XTP5|hPUF-A KIAA0020 protein-coding 13-PTNLD9-TUMOR_peak_27795 chr2 99383315 99383458 + 7.55875 NA Intergenic Intergenic -35797 NM_012214 11320 Hs.177576 NM_012214 HPRD:06860 MGAT4A GNT-IV|GNT-IVA|GnT-4a mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A protein-coding 13-PTNLD9-TUMOR_peak_14259 chr12 125650712 125650895 + 7.55875 NA Intergenic ERVL-E-int|LTR|ERVL 100878 NM_023928 65985 Hs.656073 NM_023928 HPRD:12391 AACS ACSF1|SUR-5 acetoacetyl-CoA synthetase protein-coding 13-PTNLD9-TUMOR_peak_3205 chr1 143896090 143896310 + 7.55072 NA TTS (NM_001287385).2 TTS (NM_001287385).2 16943 NM_207418 728833 Hs.535577 NM_207418 ENSG00000215784 FAM72D GCUD2 family with sequence similarity 72, member D protein-coding 13-PTNLD9-TUMOR_peak_43457 chr6 2630723 2630836 + 7.54999 NA intron (NM_152554, intron 2 of 2) MLT1C|LTR|ERVL-MaLR 4519 NM_152554 154386 Hs.680574 NM_152554 C6orf195 bA145H9.2 chromosome 6 open reading frame 195 protein-coding 13-PTNLD9-TUMOR_peak_23735 chr19 4912005 4912236 + 7.54745 NA intron (NM_001048201, intron 2 of 16) intron (NM_001048201, intron 2 of 16) 1741 NM_001290052 29128 Hs.108106 NM_013282 UHRF1 ICBP90|Np95|RNF106|hNP95|hUHRF1|huNp95 ubiquitin-like with PHD and ring finger domains 1 protein-coding 13-PTNLD9-TUMOR_peak_7301 chr10 49078875 49079123 + 7.54745 NA Intergenic AluJb|SINE|Alu -126370 NR_003611 399761 Hs.571994 NM_001040053 ENSG00000204164 BMS1P5 BMS1LP1|BMS1LP5|BMS1P1|bA556L1.3 BMS1 pseudogene 5 pseudo 13-PTNLD9-TUMOR_peak_9150 chr11 13944946 13945158 + 7.54745 NA Intergenic MER21C|LTR|ERVL -39132 NM_006108 10418 Hs.643864 NM_006108 SPON1 VSGP/F-spondin|f-spondin spondin 1, extracellular matrix protein protein-coding 13-PTNLD9-TUMOR_peak_47876 chr7 73041163 73041469 + 7.54745 NA Intergenic Intergenic -2446 NM_032954 51085 Hs.647055 NM_032951 HPRD:12033 MLXIPL CHREBP|MIO|MONDOB|WBSCR14|WS-bHLH|bHLHd14 MLX interacting protein-like protein-coding 13-PTNLD9-TUMOR_peak_35847 chr3 129029011 129029289 + 7.54745 NA Intergenic MLT2F|LTR|ERVL -5964 NR_026991 339942 Hs.450096 NM_001025468 H1FX-AS1 C3orf47 H1FX antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_18940 chr16 29518062 29518184 + 7.54739 NA Intergenic Intergenic -39224 NR_002557 613038 Hs.569585 NR_002557 ENSG00000258130 LOC613038 - coiled-coil domain containing 101 pseudogene pseudo 13-PTNLD9-TUMOR_peak_14889 chr13 77550564 77550889 + 7.54677 NA Intergenic Intergenic -15333 NM_006493 1203 Hs.30213 NM_006493 CLN5 NCL ceroid-lipofuscinosis, neuronal 5 protein-coding 13-PTNLD9-TUMOR_peak_51066 chr8 67039022 67039131 + 7.54677 NA promoter-TSS (NM_184087) promoter-TSS (NM_184087) -202 NM_184087 84675 Hs.85524 NM_033058 HPRD:05927 TRIM55 MURF-2|RNF29|muRF2 tripartite motif containing 55 protein-coding 13-PTNLD9-TUMOR_peak_22524 chr18 8062908 8063050 + 7.54677 NA intron (NM_001105244, intron 7 of 32) L1PA2|LINE|L1 304053 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 13-PTNLD9-TUMOR_peak_26195 chr2 16052415 16052600 + 7.54677 NA Intergenic Intergenic -8014 NR_125783 103752554 Hs.269571 NR_125783 MYCNUT MYCNUN|lncUSMycN MYCN upstream transcript (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_23325 chr18 57076896 57077228 + 7.54677 NA Intergenic L1PA2|LINE|L1 -50554 NM_005570 3998 Hs.465295 NM_005570 HPRD:03338 LMAN1 ERGIC-53|ERGIC53|F5F8D|FMFD1|MCFD1|MR60|gp58 lectin, mannose-binding, 1 protein-coding 13-PTNLD9-TUMOR_peak_46092 chr6 134757740 134757853 + 7.54677 NA Intergenic Intergenic -1058 NR_038216 154092 Hs.223718 NR_038216 LINC01010 - long intergenic non-protein coding RNA 1010 ncRNA 13-PTNLD9-TUMOR_peak_27778 chr2 98779272 98779392 + 7.54677 NA exon (NM_144992, exon 8 of 28) exon (NM_144992, exon 8 of 28) 75737 NM_144992 200403 Hs.269977 NM_144992 HPRD:14510 VWA3B - von Willebrand factor A domain containing 3B protein-coding 13-PTNLD9-TUMOR_peak_39271 chr4 124666071 124666170 + 7.54677 NA intron (NR_027105, intron 2 of 4) intron (NR_027105, intron 2 of 4) -29299 NR_027106 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 13-PTNLD9-TUMOR_peak_42530 chr5 147283792 147283933 + 7.54677 NA intron (NM_206966, intron 1 of 3) MIRb|SINE|MIR 2239 NM_206966 389336 Hs.660038 NM_206966 HPRD:14491 C5orf46 SSSP1 chromosome 5 open reading frame 46 protein-coding 13-PTNLD9-TUMOR_peak_16526 chr14 97249761 97249875 + 7.54677 NA Intergenic L2c|LINE|L2 -13866 NM_003384 7443 Hs.422662 NM_003384 HPRD:03701 VRK1 PCH1|PCH1A vaccinia related kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_13411 chr12 81480239 81480364 + 7.54677 NA intron (NM_024560, intron 1 of 15) intron (NM_024560, intron 1 of 15) 8492 NM_024560 79611 Hs.259559 NM_024560 HPRD:13385 ACSS3 - acyl-CoA synthetase short-chain family member 3 protein-coding 13-PTNLD9-TUMOR_peak_53734 chr9 81481736 81481869 + 7.54677 NA Intergenic Intergenic 278779 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 13-PTNLD9-TUMOR_peak_46978 chr7 19955751 19955956 + 7.54677 NA Intergenic Intergenic -143449 NM_152774 256130 Hs.487670 NM_152774 HPRD:14617 TMEM196 - transmembrane protein 196 protein-coding 13-PTNLD9-TUMOR_peak_4047 chr1 159722019 159722213 + 7.54677 NA Intergenic Intergenic -28643 NM_017823 54935 Hs.425801 NM_017823 HPRD:07908 DUSP23 DUSP25|LDP-3|MOSP|VHZ dual specificity phosphatase 23 protein-coding 13-PTNLD9-TUMOR_peak_18211 chr16 1979676 1980097 + 7.54677 NA Intergenic CpG -11655 NM_001009606 64711 Hs.670144 NM_001009606 HPRD:17115 HS3ST6 HS3ST5 heparan sulfate (glucosamine) 3-O-sulfotransferase 6 protein-coding 13-PTNLD9-TUMOR_peak_2502 chr1 94127777 94127917 + 7.54677 NA intron (NM_001261408, intron 4 of 13) L3|LINE|CR1 19079 NM_001261409 8412 Hs.36958 NM_003567 HPRD:05268 BCAR3 NSP2|SH2D3B breast cancer anti-estrogen resistance 3 protein-coding 13-PTNLD9-TUMOR_peak_13012 chr12 56890592 56890697 + 7.54677 NA Intergenic LTR13|LTR|ERVK -8446 NM_013267 27165 Hs.212606 NM_013267 HPRD:05901 GLS2 GA|GLS|LGA|hLGA glutaminase 2 (liver, mitochondrial) protein-coding 13-PTNLD9-TUMOR_peak_36220 chr3 141697975 141698104 + 7.54677 NA intron (NM_001178142, intron 1 of 7) Tigger3b|DNA|TcMar-Tigger 21190 NM_001178140 7029 Hs.379018 NM_006286 HPRD:03696 TFDP2 DP2 transcription factor Dp-2 (E2F dimerization partner 2) protein-coding 13-PTNLD9-TUMOR_peak_12961 chr12 56013528 56013743 + 7.54677 NA Intergenic Intergenic -17041 NM_206899 121130 Hs.554551 NM_206899 HPRD:14895 OR10P1 OR10P1P|OR10P2P|OR10P3P|OR12-7|OST701 olfactory receptor, family 10, subfamily P, member 1 protein-coding 13-PTNLD9-TUMOR_peak_36478 chr3 155951843 155951967 + 7.54677 NA intron (NM_003471, intron 1 of 13) L2a|LINE|L2 -6233 NR_046617 100874083 Hs.603823 NR_046617 ENSG00000240596 KCNAB1-AS2 - KCNAB1 antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_47030 chr7 22000637 22000790 + 7.54677 NA Intergenic Intergenic -15171 NM_001127370 55536 Hs.744069 NM_018719 HPRD:11481 CDCA7L JPO2|R1|RAM2 cell division cycle associated 7-like protein-coding 13-PTNLD9-TUMOR_peak_53794 chr9 85881889 85882232 + 7.54677 NA exon (NM_001244962, exon 1 of 3) exon (NM_001244962, exon 1 of 3) 142 NM_001244962 257019 Hs.127535 NM_174938 HPRD:07402 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_3122 chr1 120925444 120925771 + 7.54223 NA TTS (NR_045213) TTS (NR_045213) 10337 NR_045213 2210 Hs.534956 NM_001004340 FCGR1B CD64b|IGFRB Fc fragment of IgG, high affinity Ib, receptor (CD64) protein-coding 13-PTNLD9-TUMOR_peak_20400 chr17 7482778 7482933 + 7.54223 NA promoter-TSS (NM_001040059) promoter-TSS (NM_001040059) 49 NM_001040059 968 Hs.647419 NM_001251 HPRD:01093 CD68 GP110|LAMP4|SCARD1 CD68 molecule protein-coding 13-PTNLD9-TUMOR_peak_51093 chr8 67977120 67977261 + 7.54223 NA intron (NM_024790, intron 1 of 28) CpG 587 NM_024790 79848 Hs.370147 NM_024790 HPRD:07991 CSPP1 CSPP|JBTS21 centrosome and spindle pole associated protein 1 protein-coding 13-PTNLD9-TUMOR_peak_18740 chr16 21791819 21792142 + 7.54223 NA Intergenic L2a|LINE|L2 38515 NR_003370 730092 Hs.31290 NR_003370 RRN3P1 - RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_37396 chr3 195601000 195601106 + 7.54223 NA intron (NM_001010938, intron 9 of 14) CpG 8213 NR_106887 102465977 NR_106887 MIR6829 hsa-mir-6829 microRNA 6829 ncRNA 13-PTNLD9-TUMOR_peak_13760 chr12 109124296 109124476 + 7.53837 NA intron (NM_014325, intron 1 of 10) CpG 233 NM_001276471 23603 Hs.330384 NM_014325 HPRD:09244 CORO1C HCRNN4 coronin, actin binding protein, 1C protein-coding 13-PTNLD9-TUMOR_peak_786 chr1 27098141 27098451 + 7.53390 NA intron (NM_006015, intron 12 of 19) intron (NM_006015, intron 12 of 19) -16158 NM_017837 55650 Hs.259605 NM_017837 HPRD:07912 PIGV GPI-MT-II|HPMRS1|PIG-V phosphatidylinositol glycan anchor biosynthesis, class V protein-coding 13-PTNLD9-TUMOR_peak_14953 chr13 95201919 95202256 + 7.53390 NA Intergenic CpG 46424 NM_014305 23483 Hs.12393 NM_014305 HPRD:15494 TGDS SDR2E1|TDPGD TDP-glucose 4,6-dehydratase protein-coding 13-PTNLD9-TUMOR_peak_52354 chr8 142348891 142349010 + 7.53390 NA Intergenic Intergenic -1698 NR_024441 731779 Hs.586414 NR_024441 ENSG00000253595 LINC01300 - long intergenic non-protein coding RNA 1300 ncRNA 13-PTNLD9-TUMOR_peak_16296 chr14 75919823 75920261 + 7.53390 NA intron (NM_130469, intron 2 of 3) intron (NM_130469, intron 2 of 3) 21205 NM_001135049 122953 Hs.196482 NM_130469 HPRD:16360 JDP2 JUNDM2 Jun dimerization protein 2 protein-coding 13-PTNLD9-TUMOR_peak_6072 chr1 241869692 241869811 + 7.53390 NA intron (NM_144625, intron 7 of 26) intron (NM_144625, intron 7 of 26) 54171 NM_144625 128025 Hs.97527 NM_144625 HPRD:13412 WDR64 - WD repeat domain 64 protein-coding 13-PTNLD9-TUMOR_peak_36843 chr3 178100608 178100702 + 7.53390 NA Intergenic Intergenic -36334 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 13-PTNLD9-TUMOR_peak_42081 chr5 133354245 133354571 + 7.53390 NA Intergenic MER77B|LTR|ERVL -13584 NM_003374 7416 Hs.519320 NM_003374 HPRD:05137 VDAC1 PORIN|VDAC-1 voltage-dependent anion channel 1 protein-coding 13-PTNLD9-TUMOR_peak_50037 chr8 8244654 8244825 + 7.53390 NA Intergenic Intergenic -5395 NM_001080826 157285 Hs.583863 NM_001080826 ENSG00000182319 SGK223 PRAGMIN homolog of rat pragma of Rnd2 protein-coding 13-PTNLD9-TUMOR_peak_15760 chr14 52547293 52547389 + 7.53390 NA Intergenic AluJr|SINE|Alu -11395 NM_007361 22795 Hs.369840 NM_007361 HPRD:05654 NID2 NID-2 nidogen 2 (osteonidogen) protein-coding 13-PTNLD9-TUMOR_peak_5541 chr1 223963837 223963963 + 7.53390 NA TTS (NM_001146068) TTS (NM_001146068) 63781 NM_001748 824 Hs.350899 NM_001748 HPRD:00254 CAPN2 CANP2|CANPL2|CANPml|mCANP calpain 2, (m/II) large subunit protein-coding 13-PTNLD9-TUMOR_peak_18306 chr16 3158375 3158532 + 7.53390 NA Intergenic AluY|SINE|Alu -4110 NM_001042428 7755 Hs.592088 NM_003456 HPRD:04580 ZNF205 RhitH|ZNF210|Zfp13 zinc finger protein 205 protein-coding 13-PTNLD9-TUMOR_peak_400 chr1 11021169 11021285 + 7.53390 NA intron (NM_001170754, intron 5 of 12) intron (NM_001170754, intron 5 of 12) 20867 NM_001170754 148345 Hs.127026 NM_173507 HPRD:08780 C1orf127 - chromosome 1 open reading frame 127 protein-coding 13-PTNLD9-TUMOR_peak_4942 chr1 201277023 201277181 + 7.53299 NA intron (NM_001005337, intron 2 of 13) intron (NM_001005337, intron 2 of 13) 24522 NM_000299 5317 Hs.497350 NM_000299 HPRD:03579 PKP1 B6P plakophilin 1 protein-coding 13-PTNLD9-TUMOR_peak_24187 chr19 14591669 14591794 + 7.53299 NA intron (NM_202494, intron 1 of 5) intron (NM_202494, intron 1 of 5) -5557 NM_000955 5731 Hs.159360 NM_000955 HPRD:08903 PTGER1 EP1 prostaglandin E receptor 1 (subtype EP1), 42kDa protein-coding 13-PTNLD9-TUMOR_peak_27956 chr2 109271116 109271419 + 7.53126 NA promoter-TSS (NM_001193485) promoter-TSS (NM_001193485) -1 NM_001193485 3987 Hs.597715 NM_004987 HPRD:03978 LIMS1 PINCH|PINCH-1|PINCH1 LIM and senescent cell antigen-like domains 1 protein-coding 13-PTNLD9-TUMOR_peak_41574 chr5 96143108 96143293 + 7.52218 NA intron (NM_001198541, intron 1 of 18) CpG 692 NM_001040458 51752 Hs.666524 NM_016442 HPRD:06015 ERAP1 A-LAP|ALAP|APPILS|ARTS-1|ARTS1|ERAAP|ERAAP1|PILS-AP|PILSAP endoplasmic reticulum aminopeptidase 1 protein-coding 13-PTNLD9-TUMOR_peak_46785 chr7 5534889 5535091 + 7.52218 NA TTS (NR_030318) TTS (NR_030318) 558 NR_030318 693174 NR_030318 MIR589 MIRN589|hsa-mir-589 microRNA 589 ncRNA 13-PTNLD9-TUMOR_peak_19279 chr16 48641019 48641214 + 7.52218 NA intron (NM_153029, intron 1 of 6) intron (NM_153029, intron 1 of 6) 3004 NM_153029 9683 Hs.511839 NM_153029 HPRD:08109 N4BP1 - NEDD4 binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_39264 chr4 124317858 124317980 + 7.52218 NA promoter-TSS (NM_199327) promoter-TSS (NM_199327) -31 NM_199327 10252 Hs.744854 NM_005841 HPRD:06782 SPRY1 hSPRY1 sprouty homolog 1, antagonist of FGF signaling (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_23383 chr18 61033626 61033746 + 7.51686 NA intron (NM_002035, intron 1 of 9) intron (NM_002035, intron 1 of 9) 820 NM_002035 2531 Hs.74050 NM_002035 HPRD:00640 KDSR DHSR|FVT1|SDR35C1 3-ketodihydrosphingosine reductase protein-coding 13-PTNLD9-TUMOR_peak_22265 chr17 79339617 79339940 + 7.51681 NA Intergenic Intergenic 19382 NM_001272086 100130370 Hs.646594 NM_001272086 LOC100130370 - uncharacterized LOC100130370 protein-coding 13-PTNLD9-TUMOR_peak_44177 chr6 25360290 25360406 + 7.51681 NA intron (NM_017640, intron 2 of 36) intron (NM_017640, intron 2 of 36) 80692 NM_001173977 55604 Hs.649550 NM_017640 HPRD:11285 LRRC16A CARMIL|CARMIL1|CARMIL1a|LRRC16|dJ501N12.1|dJ501N12.5 leucine rich repeat containing 16A protein-coding 13-PTNLD9-TUMOR_peak_24176 chr19 14328248 14328394 + 7.51681 NA Intergenic Intergenic -11324 NM_014921 22859 Hs.94229 NM_014921 LPHN1 CIRL1|CL1|LEC2 latrophilin 1 protein-coding 13-PTNLD9-TUMOR_peak_36460 chr3 154842679 154842790 + 7.51681 NA intron (NM_007289, intron 8 of 22) L1PA2|LINE|L1 44655 NM_007289 4311 Hs.307734 NM_000902 HPRD:00392 MME CALLA|CD10|NEP|SFE membrane metallo-endopeptidase protein-coding 13-PTNLD9-TUMOR_peak_34568 chr3 49837280 49837387 + 7.51681 NA promoter-TSS (NM_001007540) promoter-TSS (NM_001007540) -79 NM_001007540 389118 Hs.363312 NM_001007540 HPRD:17378 CDHR4 CDH29|PRO34300 cadherin-related family member 4 protein-coding 13-PTNLD9-TUMOR_peak_14083 chr12 121678510 121678672 + 7.51681 NA exon (NM_006549, exon 17 of 17) exon (NM_006549, exon 17 of 17) 30927 NM_002560 5025 Hs.321709 NM_002560 HPRD:09017 P2RX4 P2X4|P2X4R purinergic receptor P2X, ligand-gated ion channel, 4 protein-coding 13-PTNLD9-TUMOR_peak_50261 chr8 21994922 21995085 + 7.51633 NA TTS (NM_025232) TTS (NM_025232) 4445 NM_025232 80346 Hs.289063 NM_025232 HPRD:09864 REEP4 C8orf20 receptor accessory protein 4 protein-coding 13-PTNLD9-TUMOR_peak_56590 chrX 149106720 149106951 + 7.51633 NA promoter-TSS (NR_027456) promoter-TSS (NR_027456) 69 NR_027456 100272228 Hs.496916 NR_027456 ENSG00000235703 LINC00894 - long intergenic non-protein coding RNA 894 ncRNA 13-PTNLD9-TUMOR_peak_54735 chr9 126126900 126127100 + 7.51633 NA intron (NM_173689, intron 2 of 12) intron (NM_173689, intron 2 of 12) -4058 NR_104603 286204 Hs.568340 NM_173689 HPRD:13093 CRB2 - crumbs family member 2 protein-coding 13-PTNLD9-TUMOR_peak_54174 chr9 100818602 100818843 + 7.51633 NA promoter-TSS (NM_018946) promoter-TSS (NM_018946) -237 NM_018946 54187 Hs.522310 NM_018946 HPRD:07285 NANS HEL-S-100|SAS N-acetylneuraminic acid synthase protein-coding 13-PTNLD9-TUMOR_peak_72 chr1 1217281 1217407 + 7.51633 NA intron (NR_037668, intron 3 of 16) intron (NR_037668, intron 3 of 16) 1528 NM_001130413 6339 Hs.512681 NM_002978 HPRD:03209 SCNN1D ENaCd|ENaCdelta|SCNED|dNaCh sodium channel, non-voltage-gated 1, delta subunit protein-coding 13-PTNLD9-TUMOR_peak_45104 chr6 43737353 43737674 + 7.51626 NA promoter-TSS (NM_001033756) promoter-TSS (NM_001033756) -433 NM_001171630 7422 Hs.73793 NM_003376 HPRD:01889 VEGFA MVCD1|VEGF|VPF vascular endothelial growth factor A protein-coding 13-PTNLD9-TUMOR_peak_40905 chr5 55497046 55497164 + 7.51594 NA intron (NM_024669, intron 2 of 11) intron (NM_024669, intron 2 of 11) 32081 NM_024669 79722 Hs.436214 NM_024669 HPRD:07758 ANKRD55 - ankyrin repeat domain 55 protein-coding 13-PTNLD9-TUMOR_peak_53993 chr9 94610065 94610253 + 7.51594 NA intron (NM_004560, intron 1 of 8) intron (NM_004560, intron 1 of 8) 102285 NM_004560 4920 Hs.98255 NM_004560 HPRD:03822 ROR2 BDB|BDB1|NTRKR2 receptor tyrosine kinase-like orphan receptor 2 protein-coding 13-PTNLD9-TUMOR_peak_2260 chr1 79788931 79789246 + 7.51594 NA Intergenic L2c|LINE|L2 -316593 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ELTD1 ETL|KPG_003 EGF, latrophilin and seven transmembrane domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_17115 chr15 41800222 41800551 + 7.51594 NA exon (NM_206961, exon 8 of 19) exon (NM_206961, exon 8 of 19) 5699 NM_001135685 4058 Hs.434481 NM_002344 HPRD:01052 LTK TYK1 leukocyte receptor tyrosine kinase protein-coding 13-PTNLD9-TUMOR_peak_13701 chr12 106736830 106736940 + 7.51594 NA intron (NM_152772, intron 9 of 9) intron (NM_152772, intron 9 of 9) -14551 NM_018082 55703 Hs.62696 NM_018082 HPRD:11447 POLR3B C128|HLD8|RPC2 polymerase (RNA) III (DNA directed) polypeptide B protein-coding 13-PTNLD9-TUMOR_peak_30429 chr20 11613871 11613965 + 7.51594 NA Intergenic L1HS|LINE|L1 237445 NR_110635 728450 Hs.560990 NR_110635 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 13-PTNLD9-TUMOR_peak_35165 chr3 98699891 98700223 + 7.51594 NA Intergenic Intergenic -79524 NM_080927 131566 Hs.203691 NM_080927 HPRD:10567 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_44234 chr6 26296649 26296774 + 7.51594 NA Intergenic Intergenic -10984 NM_003543 8365 Hs.591790 NM_003543 HPRD:11919 HIST1H4H H4/h|H4FH histone cluster 1, H4h protein-coding 13-PTNLD9-TUMOR_peak_6684 chr10 23991909 23992142 + 7.51594 NA intron (NM_001098500, intron 1 of 18) intron (NM_001098500, intron 1 of 18) 8350 NM_001098500 56243 Hs.445885 NM_019590 HPRD:11132 KIAA1217 SKT KIAA1217 protein-coding 13-PTNLD9-TUMOR_peak_22498 chr18 5900385 5900530 + 7.51594 NA Intergenic Intergenic -8354 NM_001080209 645369 Hs.346566 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 13-PTNLD9-TUMOR_peak_47009 chr7 21038067 21038182 + 7.51594 NA Intergenic Intergenic 171207 NR_026673 222901 Hs.722187 NR_026673 ENSG00000219451 RPL23P8 RPL23_4_790 ribosomal protein L23 pseudogene 8 pseudo 13-PTNLD9-TUMOR_peak_14455 chr13 26475915 26476072 + 7.51594 NA intron (NM_016529, intron 33 of 36) intron (NM_016529, intron 33 of 36) 149205 NM_001007538 387914 Hs.433791 NM_001007538 HPRD:16589 SHISA2 C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa shisa family member 2 protein-coding 13-PTNLD9-TUMOR_peak_35628 chr3 124211779 124211897 + 7.51594 NA intron (NM_001024660, intron 32 of 59) intron (NM_001024660, intron 32 of 59) -91668 NM_007064 8997 Hs.8004 NM_003947 HPRD:06859 KALRN ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD kalirin, RhoGEF kinase protein-coding 13-PTNLD9-TUMOR_peak_19695 chr16 70510534 70510655 + 7.51594 NA intron (NM_145059, intron 20 of 23) intron (NM_145059, intron 20 of 23) 22096 NM_145059 197258 Hs.7907 NM_145059 HPRD:16365 FUK 1110046B12Rik fucokinase protein-coding 13-PTNLD9-TUMOR_peak_28522 chr2 133958725 133958829 + 7.51594 NA intron (NR_107007, intron 4 of 6) MER44B|DNA|TcMar-Tigger -64990 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 LOC101928161 - uncharacterized LOC101928161 ncRNA 13-PTNLD9-TUMOR_peak_43122 chr5 174265001 174265230 + 7.51594 NA Intergenic Intergenic 86378 NR_039777 100616202 NR_039777 miRBase:MI0017261 MIR4634 - microRNA 4634 ncRNA 13-PTNLD9-TUMOR_peak_33042 chr22 28415388 28415614 + 7.51594 NA intron (NM_001145418, intron 13 of 22) intron (NM_001145418, intron 13 of 22) -98901 NR_036169 100423034 NR_036169 miRBase:MI0014247 MIR3199-1 - microRNA 3199-1 ncRNA 13-PTNLD9-TUMOR_peak_5806 chr1 231035614 231035971 + 7.51594 NA Intergenic Zaphod|DNA|hAT-Tip100 25200 NR_110681 101927604 Hs.638929 NR_110681 ENSG00000223393 LOC101927604 - uncharacterized LOC101927604 ncRNA 13-PTNLD9-TUMOR_peak_51735 chr8 120126720 120127064 + 7.51594 NA Intergenic Intergenic 47468 NM_006438 10584 Hs.176615 NM_006438 COLEC10 CLL1 collectin sub-family member 10 (C-type lectin) protein-coding 13-PTNLD9-TUMOR_peak_20964 chr17 37123628 37123889 + 7.51594 NA promoter-TSS (NM_001008777) promoter-TSS (NM_001008777) -103 NM_001008777 494188 Hs.549536 NM_001008777 HPRD:16886 FBXO47 - F-box protein 47 protein-coding 13-PTNLD9-TUMOR_peak_38797 chr4 86351920 86352151 + 7.51594 NA Intergenic Intergenic -44249 NM_001025616 83478 Hs.444229 NM_031305 HPRD:09804 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 13-PTNLD9-TUMOR_peak_40235 chr5 6660456 6660585 + 7.51594 NA intron (NM_001047, intron 3 of 4) intron (NM_001047, intron 3 of 4) 27020 NM_001047 6715 Hs.552 NM_001047 HPRD:01699 SRD5A1 S5AR 1 steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1) protein-coding 13-PTNLD9-TUMOR_peak_18667 chr16 18980723 18980833 + 7.51594 NA Intergenic Intergenic -14478 NM_024847 79905 Hs.187377 NM_024847 HPRD:15517 TMC7 - transmembrane channel-like 7 protein-coding 13-PTNLD9-TUMOR_peak_32370 chr21 41518295 41518446 + 7.51594 NA intron (NR_073202, intron 16 of 32) intron (NR_073202, intron 16 of 32) 65988 NR_039917 100616148 NR_039917 MIR4760 - microRNA 4760 ncRNA 13-PTNLD9-TUMOR_peak_50064 chr8 10548478 10548642 + 7.51594 NA intron (NM_001040032, intron 2 of 3) intron (NM_001040032, intron 2 of 3) 18413 NM_001040032 203076 Hs.371776 NM_001040032 ENSG00000171060 C8orf74 - chromosome 8 open reading frame 74 protein-coding 13-PTNLD9-TUMOR_peak_2699 chr1 107289511 107289619 + 7.51594 NA Intergenic Intergenic -309702 NM_018137 55170 Hs.26006 NM_018137 HPRD:10505 PRMT6 HRMT1L6 protein arginine methyltransferase 6 protein-coding 13-PTNLD9-TUMOR_peak_27855 chr2 101976843 101976959 + 7.51594 NA intron (NM_153836, intron 2 of 3) intron (NM_153836, intron 2 of 3) 27064 NM_153836 200407 Hs.732289 NM_153836 CREG2 - cellular repressor of E1A-stimulated genes 2 protein-coding 13-PTNLD9-TUMOR_peak_30731 chr20 30190739 30190858 + 7.51492 NA Intergenic MIRb|SINE|MIR -2288 NM_181353 3397 Hs.504609 NM_002165 HPRD:08980 ID1 ID|bHLHb24 inhibitor of DNA binding 1, dominant negative helix-loop-helix protein protein-coding 13-PTNLD9-TUMOR_peak_21664 chr17 57920606 57920728 + 7.51492 NA Intergenic Intergenic 2040 NR_029493 406991 Hs.444569 NR_029493 miRBase:MI0000077 MIR21 MIRN21|hsa-mir-21|miR-21|miRNA21 microRNA 21 ncRNA 13-PTNLD9-TUMOR_peak_49742 chr7 153140399 153140508 + 7.50918 NA Intergenic Intergenic -31134 NR_125776 103724390 Hs.614280 NR_125776 LINC01287 TCONS_l2_00027522 long intergenic non-protein coding RNA 1287 ncRNA 13-PTNLD9-TUMOR_peak_1498 chr1 44240169 44240299 + 7.50901 NA intron (NM_001270465, intron 2 of 7) intron (NM_001270465, intron 2 of 7) -64060 NR_106727 102464830 NR_106727 MIR6079 hsa-mir-6079 microRNA 6079 ncRNA 13-PTNLD9-TUMOR_peak_9956 chr11 60142942 60143091 + 7.50901 NA Intergenic Intergenic -2942 NM_206939 58475 Hs.530735 NM_021201 HPRD:07579 MS4A7 4SPAN2|CD20L4|CFFM4|MS4A8 membrane-spanning 4-domains, subfamily A, member 7 protein-coding 13-PTNLD9-TUMOR_peak_26443 chr2 28848102 28848355 + 7.50901 NA intron (NM_001170585, intron 49 of 56) intron (NM_001170585, intron 49 of 56) -126386 NM_206876 5500 Hs.702907 NM_002709 HPRD:11792 PPP1CB HEL-S-80p|PP-1B|PP1B|PP1beta|PPP1CD protein phosphatase 1, catalytic subunit, beta isozyme protein-coding 13-PTNLD9-TUMOR_peak_31654 chr20 55616095 55616189 + 7.50901 NA Intergenic Intergenic -172610 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_42281 chr5 139064776 139064931 + 7.50901 NA Intergenic Intergenic 36552 NM_016463 51523 Hs.744933 NM_016463 HPRD:13105 CXXC5 CF5|RINF|WID CXXC finger protein 5 protein-coding 13-PTNLD9-TUMOR_peak_22503 chr18 6482712 6483076 + 7.50901 NA Intergenic Intergenic -28521 NR_120518 100130480 Hs.646267 NM_001243517 ENSG00000265944 LINC01387 C18orf64 long intergenic non-protein coding RNA 1387 ncRNA 13-PTNLD9-TUMOR_peak_39146 chr4 117901543 117901865 + 7.50901 NA Intergenic LTR14C|LTR|ERVK 105032 NM_152402 133022 Hs.570737 NM_152402 HPRD:11643 TRAM1L1 - translocation associated membrane protein 1-like 1 protein-coding 13-PTNLD9-TUMOR_peak_37880 chr4 8317463 8317629 + 7.50901 NA Intergenic Intergenic 46054 NM_053044 94031 Hs.479119 NM_053044 HPRD:08821 HTRA3 Prsp|Tasp HtrA serine peptidase 3 protein-coding 13-PTNLD9-TUMOR_peak_42709 chr5 151725407 151725510 + 7.50901 NA Intergenic L1PA2|LINE|L1 59382 NM_020167 56923 Hs.731911 NM_020167 HPRD:12003 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 13-PTNLD9-TUMOR_peak_53048 chr9 33524120 33524321 + 7.50901 NA promoter-TSS (NM_001244752) promoter-TSS (NM_001244752) -191 NM_001244752 441459 Hs.493710 NM_001013728 HPRD:18466 ANKRD18B bA255A11.3|bA255A11.5 ankyrin repeat domain 18B protein-coding 13-PTNLD9-TUMOR_peak_7548 chr10 68990873 68991049 + 7.50901 NA intron (NM_001291133, intron 6 of 8) L1PA3|LINE|L1 218937 NR_111909 347731 Hs.652155 NM_178011 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 13-PTNLD9-TUMOR_peak_7953 chr10 89145677 89145869 + 7.50901 NA Intergenic THE1B|LTR|ERVL-MaLR 21684 NR_046091 728218 Hs.713428 NR_046091 LINC00864 - long intergenic non-protein coding RNA 864 ncRNA 13-PTNLD9-TUMOR_peak_36447 chr3 153694951 153695157 + 7.50901 NA Intergenic Intergenic -143738 NM_001251962 26084 Hs.240845 NM_015595 HPRD:11554 ARHGEF26 CSGEF|HMFN1864|SGEF Rho guanine nucleotide exchange factor (GEF) 26 protein-coding 13-PTNLD9-TUMOR_peak_48420 chr7 98023986 98024146 + 7.50901 NA intron (NM_018842, intron 1 of 13) L1ME3A|LINE|L1 6361 NM_018842 55971 Hs.656063 NM_018842 HPRD:11270 BAIAP2L1 IRTKS BAI1-associated protein 2-like 1 protein-coding 13-PTNLD9-TUMOR_peak_47262 chr7 38375277 38375477 + 7.50901 NA Intergenic Intergenic -5801 NR_040085 100506776 Hs.173034 NR_040085 TRG-AS1 - T cell receptor gamma locus antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_4361 chr1 169508376 169508519 + 7.50901 NA intron (NM_000130, intron 13 of 24) intron (NM_000130, intron 13 of 24) 47322 NM_000130 2153 Hs.30054 NM_000130 F5 FVL|PCCF|RPRGL1|THPH2 coagulation factor V (proaccelerin, labile factor) protein-coding 13-PTNLD9-TUMOR_peak_24060 chr19 12674909 12675103 + 7.50901 NA Intergenic Intergenic -12650 NM_144976 163050 Hs.655615 NM_144976 HPRD:10338 ZNF564 - zinc finger protein 564 protein-coding 13-PTNLD9-TUMOR_peak_26960 chr2 55450904 55451065 + 7.50901 NA intron (NM_152385, intron 2 of 12) AluSg|SINE|Alu -8055 NM_001135592 6233 Hs.311640 NM_002954 HPRD:01878 RPS27A CEP80|HEL112|S27A|UBA80|UBC|UBCEP1|UBCEP80 ribosomal protein S27a protein-coding 13-PTNLD9-TUMOR_peak_5931 chr1 234998779 234999038 + 7.50901 NA Intergenic Intergenic 139119 NR_038856 100506810 Hs.586634 NR_038856 ENSG00000227630 LINC01132 - long intergenic non-protein coding RNA 1132 ncRNA 13-PTNLD9-TUMOR_peak_37616 chr4 2403796 2404192 + 7.50901 NA intron (NM_001172656, intron 1 of 11) intron (NM_001172656, intron 1 of 11) 16376 NM_001172658 57732 Hs.292056 NM_020972 HPRD:11701 ZFYVE28 LST2|LYST2 zinc finger, FYVE domain containing 28 protein-coding 13-PTNLD9-TUMOR_peak_23542 chr18 77545017 77545184 + 7.50901 NA Intergenic CpG -78568 NM_012283 26251 Hs.247905 NM_012283 HPRD:12036 KCNG2 KCNF2|KV6.2 potassium voltage-gated channel, subfamily G, member 2 protein-coding 13-PTNLD9-TUMOR_peak_55082 chr9 140420278 140420390 + 7.50901 NA intron (NM_152286, intron 7 of 33) LTR13_|LTR|ERVK 24687 NM_152286 375775 Hs.294147 NM_152286 HPRD:12933 PNPLA7 C9orf111|NTE-R1|NTEL1 patatin-like phospholipase domain containing 7 protein-coding 13-PTNLD9-TUMOR_peak_6369 chr10 5651917 5652120 + 7.50901 NA Intergenic Intergenic 56540 NR_037164 79754 Hs.445899 NM_024701 HPRD:10667 ASB13 - ankyrin repeat and SOCS box containing 13 protein-coding 13-PTNLD9-TUMOR_peak_21228 chr17 43523413 43523512 + 7.50901 NA intron (NR_027782, intron 7 of 10).2 intron (NR_027782, intron 7 of 10).2 -13180 NM_174919 201176 Hs.205326 NM_174919 HPRD:12477 ARHGAP27 CAMGAP1|PP905|SH3D20|SH3P20 Rho GTPase activating protein 27 protein-coding 13-PTNLD9-TUMOR_peak_51734 chr8 120098832 120098972 + 7.50901 NA intron (NM_006438, intron 1 of 5) intron (NM_006438, intron 1 of 5) 19478 NM_006438 10584 Hs.176615 NM_006438 COLEC10 CLL1 collectin sub-family member 10 (C-type lectin) protein-coding 13-PTNLD9-TUMOR_peak_29196 chr2 178128556 178128784 + 7.50432 NA promoter-TSS (NM_001145412) promoter-TSS (NM_001145412) -53 NM_001145412 4780 Hs.744006 NM_006164 HPRD:02732 NFE2L2 NRF2 nuclear factor, erythroid 2-like 2 protein-coding 13-PTNLD9-TUMOR_peak_1077 chr1 35450603 35451151 + 7.50014 NA promoter-TSS (NM_001195156) promoter-TSS (NM_001195156) 71 NM_001195156 100506144 Hs.533986 NM_001195156 ENSG00000243749 ZMYM6NB - ZMYM6 neighbor protein-coding 13-PTNLD9-TUMOR_peak_49134 chr7 131376912 131377133 + 7.50014 NA Intergenic Intergenic -135646 NM_001018111 5420 Hs.744213 NM_005397 HPRD:04025 PODXL Gp200|PC|PCLP|PCLP-1 podocalyxin-like protein-coding 13-PTNLD9-TUMOR_peak_36561 chr3 158846549 158846684 + 7.50014 NA intron (NM_001042706, intron 1 of 3) intron (NM_001042706, intron 1 of 3) 59575 NM_001197100 654502 Hs.570685 NM_001042705 ENSG00000214216 IQCJ - IQ motif containing J protein-coding 13-PTNLD9-TUMOR_peak_14990 chr13 99161859 99161966 + 7.50014 NA intron (NM_001032296, intron 2 of 10) MER54B|LTR|ERVL 12467 NM_003576 8428 Hs.508514 NM_003576 HPRD:10385 STK24 HEL-S-95|MST3|MST3B|STE20|STK3 serine/threonine kinase 24 protein-coding 13-PTNLD9-TUMOR_peak_47931 chr7 73624252 73624354 + 7.50014 NA 5' UTR (NM_032464, exon 1 of 14) 5' UTR (NM_032464, exon 1 of 14) 216 NM_032463 7462 Hs.741249 NM_014146 HPRD:09304 LAT2 LAB|NTAL|WBSCR15|WBSCR5|WSCR5 linker for activation of T cells family, member 2 protein-coding 13-PTNLD9-TUMOR_peak_50578 chr8 33324861 33324967 + 7.50014 NA intron (NM_032664, intron 1 of 4) intron (NM_032664, intron 1 of 4) 5750 NM_032664 84750 Hs.458713 NM_032664 ENSG00000172728 FUT10 - fucosyltransferase 10 (alpha (1,3) fucosyltransferase) protein-coding 13-PTNLD9-TUMOR_peak_54712 chr9 125357821 125358016 + 7.50014 NA Intergenic L1PA3|LINE|L1 -19099 NM_012364 158131 Hs.684864 NM_012364 HPRD:14926 OR1Q1 HSTPCR106|OR1Q2|OR1Q3|OR9-25|OR9-A|OST226|OST226OR9-A|TPCR106 olfactory receptor, family 1, subfamily Q, member 1 protein-coding 13-PTNLD9-TUMOR_peak_13655 chr12 104982230 104982369 + 7.50014 NA intron (NM_018413, intron 1 of 2) intron (NM_018413, intron 1 of 2) -3112 NR_037487 100500843 NR_037487 MIR3922 - microRNA 3922 ncRNA 13-PTNLD9-TUMOR_peak_52863 chr9 19992660 19992754 + 7.50014 NA Intergenic Intergenic -205690 NM_020344 25769 Hs.283014 NM_020344 HPRD:15351 SLC24A2 NCKX2 solute carrier family 24 (sodium/potassium/calcium exchanger), member 2 protein-coding 13-PTNLD9-TUMOR_peak_5874 chr1 233743333 233743484 + 7.50014 NA Intergenic Intergenic -6342 NM_002245 3775 Hs.208544 NM_002245 HPRD:03447 KCNK1 DPK|HOHO|K2P1|K2p1.1|KCNO1|TWIK-1|TWIK1 potassium channel, subfamily K, member 1 protein-coding 13-PTNLD9-TUMOR_peak_54598 chr9 119674004 119674153 + 7.50014 NA intron (NM_014010, intron 9 of 21) AluY|SINE|Alu 224497 NM_012210 22954 Hs.591910 NM_012210 HPRD:03797 TRIM32 BBS11|HT2A|LGMD2H|TATIP tripartite motif containing 32 protein-coding 13-PTNLD9-TUMOR_peak_11176 chr11 110778464 110778697 + 7.50014 NA Intergenic Intergenic -194668 NM_001258418 57569 Hs.6136 NM_020809 HPRD:10657 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 13-PTNLD9-TUMOR_peak_48902 chr7 123174598 123174695 + 7.50014 NA promoter-TSS (NR_104245) promoter-TSS (NR_104245) 72 NR_104245 154865 Hs.159650 NM_178827 HPRD:08194 IQUB - IQ motif and ubiquitin domain containing protein-coding 13-PTNLD9-TUMOR_peak_5639 chr1 226322866 226323113 + 7.50014 NA Intergenic Intergenic 51434 NM_022735 64746 Hs.520207 NM_022735 HPRD:08432 ACBD3 GCP60|GOCAP1|GOLPH1|PAP7 acyl-CoA binding domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_31058 chr20 39264746 39265029 + 7.50014 NA Intergenic MLT1J1|LTR|ERVL-MaLR 52993 NM_005461 9935 Hs.169487 NM_005461 HPRD:07129 MAFB KRML|MCTO v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog B protein-coding 13-PTNLD9-TUMOR_peak_22767 chr18 20723106 20723421 + 7.50014 NA intron (NM_001100619, intron 1 of 9) intron (NM_001100619, intron 1 of 9) 7536 NM_001100619 91768 Hs.11108 NM_138375 HPRD:16461 CABLES1 CABL1|CABLES|HsT2563|IK3-1 Cdk5 and Abl enzyme substrate 1 protein-coding 13-PTNLD9-TUMOR_peak_17872 chr15 85201589 85201888 + 7.50014 NA promoter-TSS (NM_021077) promoter-TSS (NM_021077) 64 NM_205858 4828 Hs.386470 NM_021077 HPRD:01210 NMB - neuromedin B protein-coding 13-PTNLD9-TUMOR_peak_10627 chr11 74405649 74405844 + 7.50014 NA Intergenic Intergenic 25636 NR_039845 100616402 NR_039845 MIR4696 - microRNA 4696 ncRNA 13-PTNLD9-TUMOR_peak_22273 chr17 79520129 79520247 + 7.49990 NA promoter-TSS (NM_025161) promoter-TSS (NM_025161) -759 NM_025161 80233 Hs.313905 NM_025161 HPRD:07982 C17orf70 FAAP100 chromosome 17 open reading frame 70 protein-coding 13-PTNLD9-TUMOR_peak_41194 chr5 70362242 70362475 + 7.49990 NA intron (NM_001515, intron 1 of 15) AluSz|SINE|Alu 1139 NM_001515 2966 Hs.191356 NM_001515 HPRD:03450 GTF2H2 BTF2|BTF2P44|T-BTF2P44|TFIIH|p44 general transcription factor IIH, polypeptide 2, 44kDa protein-coding 13-PTNLD9-TUMOR_peak_44384 chr6 28889919 28890069 + 7.49990 NA intron (NM_006510, intron 1 of 7).3 intron (NM_006510, intron 1 of 7).3 1774 NM_006510 5987 Hs.440382 NM_006510 HPRD:15996 TRIM27 RFP|RNF76 tripartite motif containing 27 protein-coding 13-PTNLD9-TUMOR_peak_32043 chr21 28217571 28217665 + 7.49485 NA 5' UTR (NM_006988, exon 1 of 9) 5' UTR (NM_006988, exon 1 of 9) 110 NM_006988 9510 Hs.643357 NM_006988 HPRD:05530 ADAMTS1 C3-C5|METH1 ADAM metallopeptidase with thrombospondin type 1 motif, 1 protein-coding 13-PTNLD9-TUMOR_peak_22332 chr17 80290831 80290932 + 7.49485 NA intron (NM_003004, intron 1 of 4) intron (NM_003004, intron 1 of 4) 1040 NM_003004 6398 Hs.558009 NM_003004 HPRD:04004 SECTM1 K12 secreted and transmembrane 1 protein-coding 13-PTNLD9-TUMOR_peak_35767 chr3 127176085 127176240 + 7.49485 NA Intergenic Intergenic -66649 NR_110147 101927123 Hs.526761 NR_110147 ENSG00000244215 LOC101927123 - uncharacterized LOC101927123 ncRNA 13-PTNLD9-TUMOR_peak_43849 chr6 13397861 13397987 + 7.49485 NA intron (NM_018988, intron 1 of 1) intron (NM_018988, intron 1 of 1) 10445 NM_001242630 54438 Hs.484686 NM_018988 HPRD:13574 GFOD1 ADG-90|C6orf114 glucose-fructose oxidoreductase domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_18765 chr16 22607935 22608258 + 7.49113 NA Intergenic L2a|LINE|L2 51077 NR_003676 653786 Hs.564945 NR_003676 ENSG00000257838 LOC653786 - otoancorin pseudogene pseudo 13-PTNLD9-TUMOR_peak_32914 chr22 23621249 23621355 + 7.49113 NA intron (NM_004327, intron 8 of 22) MIRb|SINE|MIR 16348 NR_033408 26226 Hs.729589 NR_033408 FBXW4P1 FBW3|FBXW3|SHFM3P1 F-box and WD repeat domain containing 4 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_49471 chr7 142868899 142869054 + 7.49113 NA Intergenic Intergenic -11536 NM_176881 259285 Hs.553660 NM_176881 HPRD:18149 TAS2R39 T2R39|T2R57 taste receptor, type 2, member 39 protein-coding 13-PTNLD9-TUMOR_peak_4227 chr1 164607820 164608059 + 7.49113 NA intron (NM_001204961, intron 2 of 7) intron (NM_001204961, intron 2 of 7) 79342 NM_002585 5087 Hs.557097 NM_002585 HPRD:08889 PBX1 - pre-B-cell leukemia homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_33869 chr3 13938191 13938293 + 7.48678 NA Intergenic Intergenic -16624 NM_004625 7476 Hs.72290 NM_004625 WNT7A - wingless-type MMTV integration site family, member 7A protein-coding 13-PTNLD9-TUMOR_peak_18885 chr16 28608318 28608435 + 7.48678 NA promoter-TSS (NM_177528) promoter-TSS (NM_177528) 15 NM_001054 6799 Hs.546304 NM_001054 HPRD:03187 SULT1A2 HAST4|P-PST|ST1A2|STP2|TSPST2 sulfotransferase family, cytosolic, 1A, phenol-preferring, member 2 protein-coding 13-PTNLD9-TUMOR_peak_28895 chr2 161264137 161264406 + 7.48678 NA TTS (NR_039946) TTS (NR_039946) 122 NR_039946 100616364 NR_039946 MIR4785 - microRNA 4785 ncRNA 13-PTNLD9-TUMOR_peak_51404 chr8 101524589 101524695 + 7.48678 NA intron (NM_001270379, intron 5 of 5) intron (NM_001270379, intron 5 of 5) 47297 NM_001270378 157567 Hs.530199 NM_198401 HPRD:14103 ANKRD46 ANK-S|GENX-115279 ankyrin repeat domain 46 protein-coding 13-PTNLD9-TUMOR_peak_34484 chr3 48166593 48166828 + 7.48678 NA Intergenic MLT1F1|LTR|ERVL-MaLR -35941 NM_001134364 4134 Hs.517949 NM_002375 HPRD:01141 MAP4 - microtubule-associated protein 4 protein-coding 13-PTNLD9-TUMOR_peak_42411 chr5 141615176 141615300 + 7.48678 NA Intergenic Intergenic 88744 NM_001293289 81848 Hs.323308 NM_030964 HPRD:10466 SPRY4 HH17 sprouty homolog 4 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_41142 chr5 68628555 68628681 + 7.48678 NA promoter-TSS (NM_176816) promoter-TSS (NM_176816) 2 NM_001297697 202243 Hs.654850 NM_176816 HPRD:13774 CCDC125 KENAE coiled-coil domain containing 125 protein-coding 13-PTNLD9-TUMOR_peak_49437 chr7 142226273 142226379 + 7.47576 NA Intergenic Intergenic -147805 NM_001190487 100463482 NM_001190487 ENSG00000270672 MTRNR2L6 HN6 MT-RNR2-like 6 protein-coding 13-PTNLD9-TUMOR_peak_47852 chr7 72580372 72580502 + 7.47576 NA intron (NR_002206, intron 1 of 23) MLT1F|LTR|ERVL-MaLR 11420 NR_002206 2970 Hs.654705 NR_002206 GTF2IP1 WBSCR7 general transcription factor IIi, pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_49286 chr7 137615496 137615712 + 7.47576 NA intron (NM_194071, intron 1 of 11) intron (NM_194071, intron 1 of 11) -22490 NM_001243523 100130880 Hs.712161 NM_001243523 LOC100130880 - uncharacterized LOC100130880 protein-coding 13-PTNLD9-TUMOR_peak_5264 chr1 206529780 206529913 + 7.47576 NA intron (NM_001170637, intron 1 of 19) intron (NM_001170637, intron 1 of 19) 13646 NM_001170637 23380 Hs.497575 NM_015326 SRGAP2 ARHGAP34|FNBP2|SRGAP2A|SRGAP3 SLIT-ROBO Rho GTPase activating protein 2 protein-coding 13-PTNLD9-TUMOR_peak_3995 chr1 157709436 157709573 + 7.47272 NA Intergenic L1P4a|LINE|L1 37418 NM_030764 79368 Hs.437393 NM_030764 HPRD:07351 FCRL2 CD307b|FCRH2|IFGP4|IRTA4|SPAP1|SPAP1A|SPAP1B|SPAP1C Fc receptor-like 2 protein-coding 13-PTNLD9-TUMOR_peak_50450 chr8 27851102 27851205 + 7.47272 NA promoter-TSS (NM_173833) promoter-TSS (NM_173833) -784 NM_173833 286133 Hs.591833 NM_173833 HPRD:11356 SCARA5 NET33|Tesr scavenger receptor class A, member 5 protein-coding 13-PTNLD9-TUMOR_peak_4044 chr1 159462899 159463081 + 7.47272 NA Intergenic Intergenic 42807 NM_001004469 127385 Hs.553587 NM_001004469 HPRD:14892 OR10J5 OR1-28 olfactory receptor, family 10, subfamily J, member 5 protein-coding 13-PTNLD9-TUMOR_peak_33046 chr22 28568983 28569204 + 7.47272 NA intron (NM_001145418, intron 5 of 22) intron (NM_001145418, intron 5 of 22) -252493 NR_036169 100423034 NR_036169 miRBase:MI0014247 MIR3199-1 - microRNA 3199-1 ncRNA 13-PTNLD9-TUMOR_peak_18315 chr16 3215945 3216170 + 7.47272 NA Intergenic LTR13|LTR|ERVK 30923 NM_001134655 7760 Hs.115284 NM_004220 HPRD:12224 ZNF213 CR53|ZKSCAN21|ZSCAN53 zinc finger protein 213 protein-coding 13-PTNLD9-TUMOR_peak_17407 chr15 62939804 62939993 + 7.47272 NA intron (NM_015059, intron 1 of 55) intron (NM_015059, intron 1 of 55) 388 NM_015059 83660 Hs.569438 NM_015059 HPRD:09555 TLN2 ILWEQ talin 2 protein-coding 13-PTNLD9-TUMOR_peak_42564 chr5 148494393 148494568 + 7.47272 NA Intergenic Intergenic -26566 NM_001301015 22885 Hs.49688 NM_014945 HPRD:12411 ABLIM3 - actin binding LIM protein family, member 3 protein-coding 13-PTNLD9-TUMOR_peak_39129 chr4 115286153 115286338 + 7.47272 NA Intergenic MLT1E3|LTR|ERVL-MaLR -233366 NM_001128174 7368 Hs.144197 NM_003360 HPRD:03186 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 13-PTNLD9-TUMOR_peak_15140 chr13 113504642 113504790 + 7.47272 NA intron (NM_032189, intron 17 of 28) intron (NM_032189, intron 17 of 28) -95671 NR_046661 100874205 Hs.658692 NR_046661 ENSG00000232684 ATP11A-AS1 - ATP11A antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_51209 chr8 82645082 82645217 + 7.47272 NA intron (NM_152284, intron 1 of 4) intron (NM_152284, intron 1 of 4) 461 NM_152284 92421 Hs.183861 NM_152284 HPRD:18135 CHMP4C SNF7-3|Shax3|VPS32C charged multivesicular body protein 4C protein-coding 13-PTNLD9-TUMOR_peak_12414 chr12 29793751 29793999 + 7.47272 NA intron (NM_175861, intron 5 of 17) L1PBa1|LINE|L1 142868 NM_001193451 83857 Hs.401954 NM_175861 HPRD:12472 TMTC1 OLF|TMTC1A transmembrane and tetratricopeptide repeat containing 1 protein-coding 13-PTNLD9-TUMOR_peak_14461 chr13 26827944 26828100 + 7.47272 NA promoter-TSS (NM_001260) promoter-TSS (NM_001260) -734 NM_001260 1024 Hs.382306 NM_001260 HPRD:04422 CDK8 K35 cyclin-dependent kinase 8 protein-coding 13-PTNLD9-TUMOR_peak_56346 chrX 109645735 109646063 + 7.47272 NA intron (NM_001171689, intron 2 of 7) intron (NM_001171689, intron 2 of 7) -16386 NM_020769 57529 Hs.201071 NM_020769 HPRD:06600 RGAG1 MAR9|MART9 retrotransposon gag domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_1857 chr1 54982066 54982184 + 7.47272 NA Intergenic Intergenic -31682 NM_015547 26027 Hs.745173 NM_015547 HPRD:07075 ACOT11 BFIT|STARD14|THEA|THEM1 acyl-CoA thioesterase 11 protein-coding 13-PTNLD9-TUMOR_peak_23116 chr18 45979366 45979476 + 7.47272 NA Intergenic Intergenic -86006 NM_014772 9811 Hs.145230 NM_014772 HPRD:11083 CTIF Gm672|KIAA0427 CBP80/20-dependent translation initiation factor protein-coding 13-PTNLD9-TUMOR_peak_41017 chr5 60745650 60745775 + 7.47272 NA intron (NM_020928, intron 1 of 13) intron (NM_020928, intron 1 of 13) 117612 NM_020928 57688 Hs.744939 NM_020928 ENSG00000130449 ZSWIM6 - zinc finger, SWIM-type containing 6 protein-coding 13-PTNLD9-TUMOR_peak_1534 chr1 44938491 44938780 + 7.47272 NA intron (NM_018150, intron 2 of 14) intron (NM_018150, intron 2 of 14) 67675 NM_018150 55182 Hs.456557 NM_018150 HPRD:13336 RNF220 C1orf164 ring finger protein 220 protein-coding 13-PTNLD9-TUMOR_peak_41057 chr5 64398818 64399010 + 7.47272 NA Intergenic CpG 334169 NM_001297644 10283 Hs.371372 NM_005869 HPRD:11541 CWC27 NY-CO-10|SDCCAG10 CWC27 spliceosome-associated protein homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_41134 chr5 68026655 68026800 + 7.47272 NA Intergenic Intergenic -363049 NM_001251969 64924 Hs.631975 NM_022902 HPRD:06381 SLC30A5 ZNT5|ZNTL1|ZTL1|ZnT-5 solute carrier family 30 (zinc transporter), member 5 protein-coding 13-PTNLD9-TUMOR_peak_6447 chr10 10264266 10264477 + 7.47272 NA Intergenic MSTB|LTR|ERVL-MaLR 163686 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LOC101928298 - uncharacterized LOC101928298 ncRNA 13-PTNLD9-TUMOR_peak_32715 chr22 18917053 18917348 + 7.47272 NA intron (NM_001195226, intron 2 of 13) intron (NM_001195226, intron 2 of 13) 6764 NM_001195226 5625 Hs.517352 NM_016335 HPRD:08433 PRODH HSPOX2|PIG6|POX|PRODH1|PRODH2|TP53I6 proline dehydrogenase (oxidase) 1 protein-coding 13-PTNLD9-TUMOR_peak_29156 chr2 175701491 175701593 + 7.47272 NA intron (NM_001025201, intron 7 of 12) MLT1K|LTR|ERVL-MaLR 10804 NM_001206602 1123 Hs.380138 NM_001822 HPRD:00319 CHN1 ARHGAP2|CHN|DURS2|NC|RHOGAP2 chimerin 1 protein-coding 13-PTNLD9-TUMOR_peak_13869 chr12 112179117 112179266 + 7.47272 NA intron (NM_001136538, intron 13 of 21) intron (NM_001136538, intron 13 of 21) -25500 NM_001204889 217 Hs.604551 NM_000690 HPRD:00003 ALDH2 ALDH-E2|ALDHI|ALDM aldehyde dehydrogenase 2 family (mitochondrial) protein-coding 13-PTNLD9-TUMOR_peak_44096 chr6 22180556 22180710 + 7.47272 NA intron (NR_015410, intron 10 of 11) L1PA2|LINE|L1 -33211 NR_034143 729177 Hs.730673 NR_034143 ENSG00000260455 CASC14 - cancer susceptibility candidate 14 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_30062 chr2 235149644 235149904 + 7.47272 NA Intergenic MLT1F1|LTR|ERVL-MaLR 190428 NM_006944 6694 Hs.444488 NM_006944 HPRD:04029 SPP2 SPP-24|SPP24 secreted phosphoprotein 2, 24kDa protein-coding 13-PTNLD9-TUMOR_peak_6308 chr10 3514465 3514702 + 7.47244 NA Intergenic Intergenic -299550 NM_001242307 10531 Hs.528300 NM_014889 HPRD:07142 PITRM1 MP1|PreP pitrilysin metallopeptidase 1 protein-coding 13-PTNLD9-TUMOR_peak_33027 chr22 27598775 27599029 + 7.47131 NA Intergenic Intergenic 299647 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000223704 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 13-PTNLD9-TUMOR_peak_16321 chr14 77413593 77413728 + 7.47131 NA Intergenic Intergenic 81382 NM_024496 64207 Hs.179260 NM_024496 HPRD:10713 IRF2BPL C14orf4|EAP1 interferon regulatory factor 2 binding protein-like protein-coding 13-PTNLD9-TUMOR_peak_50774 chr8 43160256 43160413 + 7.47131 NA intron (NM_001002920, intron 5 of 12) MER1A|DNA|hAT-Charlie 12749 NM_001005365 340441 Hs.531579 NM_001002920 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family, member A protein-coding 13-PTNLD9-TUMOR_peak_21085 chr17 40531451 40531559 + 7.47131 NA intron (NM_139276, intron 1 of 23) intron (NM_139276, intron 1 of 23) 8900 NM_213662 6774 Hs.463059 NM_003150 HPRD:00026 STAT3 APRF|HIES signal transducer and activator of transcription 3 (acute-phase response factor) protein-coding 13-PTNLD9-TUMOR_peak_54978 chr9 136202852 136203239 + 7.47131 NA promoter-TSS (NM_006753) promoter-TSS (NM_006753) 2 NM_001278942 6838 Hs.274430 NM_006753 HPRD:01714 SURF6 RRP14 surfeit 6 protein-coding 13-PTNLD9-TUMOR_peak_48220 chr7 86988850 86988972 + 7.47131 NA 3' UTR (NM_001243745, exon 4 of 4) 3' UTR (NM_001243745, exon 4 of 4) 13960 NM_021151 54677 Hs.125039 NM_021151 HPRD:12081 CROT COT carnitine O-octanoyltransferase protein-coding 13-PTNLD9-TUMOR_peak_16611 chr14 102771563 102771731 + 7.47131 NA promoter-TSS (NM_001272011) promoter-TSS (NM_001272011) -110 NM_014226 5891 Hs.104119 NM_014226 HPRD:09310 MOK RAGE|RAGE-1|RAGE1|STK30 MOK protein kinase protein-coding 13-PTNLD9-TUMOR_peak_6888 chr10 32735270 32735395 + 7.47131 NA promoter-TSS (NR_120660) promoter-TSS (NR_120660) 322 NR_109826 79741 Hs.585464 NM_024688 HPRD:10698 CCDC7 BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 13-PTNLD9-TUMOR_peak_36157 chr3 139922507 139922720 + 7.47131 NA intron (NM_022131, intron 2 of 16) intron (NM_022131, intron 2 of 16) 268586 NM_022131 64084 Hs.158529 NM_022131 CLSTN2 ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma calsyntenin 2 protein-coding 13-PTNLD9-TUMOR_peak_15768 chr14 52836037 52836187 + 7.47131 NA Intergenic Intergenic 55096 NM_000956 5732 Hs.2090 NM_000956 HPRD:08905 PTGER2 EP2 prostaglandin E receptor 2 (subtype EP2), 53kDa protein-coding 13-PTNLD9-TUMOR_peak_8488 chr10 123287264 123287507 + 7.47131 NA intron (NR_073009, intron 4 of 16) intron (NR_073009, intron 4 of 16) 66096 NM_001144913 2263 Hs.533683 NM_000141 HPRD:01492 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 13-PTNLD9-TUMOR_peak_53899 chr9 90873628 90873735 + 7.47131 NA Intergenic Intergenic -123781 NM_001166137 645961 Hs.632070 NM_001166137 SPATA31C2 FAM75C2 SPATA31 subfamily C, member 2 protein-coding 13-PTNLD9-TUMOR_peak_12583 chr12 41903603 41903783 + 7.47131 NA exon (NM_013377, exon 3 of 8) exon (NM_013377, exon 3 of 8) 72152 NM_013377 29951 Hs.380044 NM_013377 HPRD:15116 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 13-PTNLD9-TUMOR_peak_44320 chr6 27740180 27740342 + 7.47131 NA Intergenic Intergenic 10738 NR_038929 100131289 Hs.200573 NR_038929 LOC100131289 - uncharacterized LOC100131289 ncRNA 13-PTNLD9-TUMOR_peak_56739 chrX 153964057 153964251 + 7.47131 NA intron (NR_104114, intron 1 of 8) L2|LINE|L2 15204 NM_001282283 139716 Hs.496982 NM_080612 HPRD:06571 GAB3 - GRB2-associated binding protein 3 protein-coding 13-PTNLD9-TUMOR_peak_40499 chr5 25384055 25384250 + 7.47131 NA Intergenic L1PA2|LINE|L1 -543460 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LOC340107 - uncharacterized LOC340107 ncRNA 13-PTNLD9-TUMOR_peak_41508 chr5 90589502 90589680 + 7.46722 NA Intergenic AluJb|SINE|Alu 20628 NR_103548 100505994 Hs.628363 NR_103548 ENSG00000248323 LUCAT1 SCAL1 lung cancer associated transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_35766 chr3 127175531 127175688 + 7.46722 NA Intergenic Intergenic -66096 NR_110147 101927123 Hs.526761 NR_110147 ENSG00000244215 LOC101927123 - uncharacterized LOC101927123 ncRNA 13-PTNLD9-TUMOR_peak_4120 chr1 161014787 161014995 + 7.46722 NA promoter-TSS (NM_001276373) promoter-TSS (NM_001276373) -164 NM_001276373 7391 Hs.414880 NM_007122 HPRD:01880 USF1 FCHL|FCHL1|HYPLIP1|MLTF|MLTFI|UEF|bHLHb11 upstream transcription factor 1 protein-coding 13-PTNLD9-TUMOR_peak_54814 chr9 130483579 130484097 + 7.46722 NA intron (NM_144965, intron 6 of 13) intron (NM_144965, intron 6 of 13) 5480 NM_144965 158248 Hs.642748 NM_144965 HPRD:15581 TTC16 - tetratricopeptide repeat domain 16 protein-coding 13-PTNLD9-TUMOR_peak_46153 chr6 139696404 139696704 + 7.46722 NA promoter-TSS (NM_006079) promoter-TSS (NM_006079) -767 NM_006079 10370 Hs.82071 NM_006079 HPRD:04245 CITED2 ASD8|MRG-1|MRG1|P35SRJ|VSD2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 protein-coding 13-PTNLD9-TUMOR_peak_27271 chr2 73340623 73340796 + 7.46722 NA promoter-TSS (NM_015470) promoter-TSS (NM_015470) -563 NM_015470 26056 Hs.24557 NM_015470 HPRD:16117 RAB11FIP5 GAF1|RIP11|pp75 RAB11 family interacting protein 5 (class I) protein-coding 13-PTNLD9-TUMOR_peak_33898 chr3 14597382 14597602 + 7.46722 NA Intergenic CpG -15642 NM_001080423 80852 Hs.517819 NM_001080423 GRIP2 - glutamate receptor interacting protein 2 protein-coding 13-PTNLD9-TUMOR_peak_37729 chr4 4854693 4854810 + 7.46691 NA Intergenic CpG -6641 NM_002448 4487 Hs.424414 NM_002448 HPRD:00866 MSX1 ECTD3|HOX7|HYD1|STHAG1 msh homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_2991 chr1 116711119 116711225 + 7.46691 NA Intergenic CpG 56796 NM_152367 126868 Hs.376194 NM_152367 HPRD:08245 MAB21L3 C1orf161 mab-21-like 3 (C. elegans) protein-coding 13-PTNLD9-TUMOR_peak_43678 chr6 7468861 7469064 + 7.46691 NA Intergenic Intergenic 66082 NM_153005 83732 Hs.437474 NM_031480 HPRD:17978 RIOK1 AD034|RRP10|bA288G3.1 RIO kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_21018 chr17 38642405 38642655 + 7.46691 NA intron (NM_032865, intron 4 of 12) intron (NM_032865, intron 4 of 12) 15324 NM_032865 84951 Hs.438292 NM_032865 HPRD:12223 TNS4 CTEN tensin 4 protein-coding 13-PTNLD9-TUMOR_peak_21806 chr17 63510324 63510504 + 7.46691 NA Intergenic Intergenic 47326 NM_004655 8313 Hs.156527 NM_004655 HPRD:04935 AXIN2 AXIL|ODCRCS axin 2 protein-coding 13-PTNLD9-TUMOR_peak_18500 chr16 10965470 10965834 + 7.46691 NA Intergenic Intergenic -5403 NM_000246 4261 Hs.701991 NM_000246 HPRD:02475 CIITA C2TA|CIITAIV|MHC2TA|NLRA class II, major histocompatibility complex, transactivator protein-coding 13-PTNLD9-TUMOR_peak_34781 chr3 58562116 58562233 + 7.46691 NA intron (NM_007177, intron 1 of 4) intron (NM_007177, intron 1 of 4) 1317 NM_001076778 11170 Hs.506357 NM_007177 HPRD:09753 FAM107A DRR1|TU3A family with sequence similarity 107, member A protein-coding 13-PTNLD9-TUMOR_peak_30728 chr20 30181595 30181786 + 7.46627 NA Intergenic Intergenic -11396 NM_181353 3397 Hs.504609 NM_002165 HPRD:08980 ID1 ID|bHLHb24 inhibitor of DNA binding 1, dominant negative helix-loop-helix protein protein-coding 13-PTNLD9-TUMOR_peak_1129 chr1 36602282 36602376 + 7.46623 NA non-coding (NR_073098, exon 2 of 2) non-coding (NR_073098, exon 2 of 2) -11644 NM_005202 1296 Hs.353001 NM_005202 HPRD:08347 COL8A2 FECD|FECD1|PPCD|PPCD2 collagen, type VIII, alpha 2 protein-coding 13-PTNLD9-TUMOR_peak_9903 chr11 57549101 57549288 + 7.46623 NA intron (NM_001085467, intron 1 of 16) intron (NM_001085467, intron 1 of 16) 19960 NM_001085467 1500 Hs.166011 NM_001331 HPRD:03026 CTNND1 CAS|CTNND|P120CAS|P120CTN|p120|p120(CAS)|p120(CTN) catenin (cadherin-associated protein), delta 1 protein-coding 13-PTNLD9-TUMOR_peak_6707 chr10 24752660 24752806 + 7.46623 NA intron (NM_001282769, intron 1 of 13) intron (NM_001282769, intron 1 of 13) -2701 NM_001282770 56243 Hs.445885 NM_019590 HPRD:11132 KIAA1217 SKT KIAA1217 protein-coding 13-PTNLD9-TUMOR_peak_1373 chr1 41967427 41967576 + 7.46047 NA Intergenic Intergenic -17157 NM_001956 1907 Hs.1407 NM_001956 HPRD:07173 EDN2 ET2|PPET2 endothelin 2 protein-coding 13-PTNLD9-TUMOR_peak_22771 chr18 20840352 20840545 + 7.45674 NA TTS (NM_138375) TTS (NM_138375) 104659 NM_138375 91768 Hs.11108 NM_138375 HPRD:16461 CABLES1 CABL1|CABLES|HsT2563|IK3-1 Cdk5 and Abl enzyme substrate 1 protein-coding 13-PTNLD9-TUMOR_peak_35208 chr3 101406574 101406764 + 7.45674 NA Intergenic Intergenic -1106 NM_000986 6152 Hs.477028 NM_000986 HPRD:10365 RPL24 HEL-S-310|L24 ribosomal protein L24 protein-coding 13-PTNLD9-TUMOR_peak_4486 chr1 175490403 175490732 + 7.45674 NA intron (NM_003285, intron 2 of 22) intron (NM_003285, intron 2 of 22) 222185 NM_003285 7143 Hs.659864 NM_003285 HPRD:03589 TNR TN-R tenascin R protein-coding 13-PTNLD9-TUMOR_peak_36100 chr3 138327457 138328255 + 7.45674 NA promoter-TSS (NM_018147) promoter-TSS (NM_018147) -63 NM_018147 55179 Hs.173438 NM_018147 HPRD:16874 FAIM FAIM1 Fas apoptotic inhibitory molecule protein-coding 13-PTNLD9-TUMOR_peak_1360 chr1 41898146 41898299 + 7.45300 NA Intergenic Intergenic 52122 NM_001956 1907 Hs.1407 NM_001956 HPRD:07173 EDN2 ET2|PPET2 endothelin 2 protein-coding 13-PTNLD9-TUMOR_peak_28965 chr2 165697474 165697637 + 7.45300 NA intron (NR_110574, intron 1 of 1) CpG 296 NR_110574 101929633 Hs.570267 NR_110574 LOC101929633 - uncharacterized LOC101929633 ncRNA 13-PTNLD9-TUMOR_peak_44273 chr6 26852319 26852448 + 7.44661 NA intron (NR_003504, intron 5 of 8) AluJo|SINE|Alu 71950 NR_003504 387036 Hs.675815 NM_001033523 ENSG00000241549 GUSBP2 GUSBL1|GUSBP4|SMA3-L|SMAC3L|SMAC3L2|b55C20.1|bA239L20.1|bA239L20.5|bGLU-Lp glucuronidase, beta pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_48792 chr7 107532147 107532259 + 7.44010 NA intron (NM_001289752, intron 1 of 12) intron (NM_001289752, intron 1 of 12) 651 NM_000108 1738 Hs.131711 NM_000108 HPRD:02006 DLD DLDD|DLDH|E3|GCSL|LAD|PHE3 dihydrolipoamide dehydrogenase protein-coding 13-PTNLD9-TUMOR_peak_1269 chr1 40235934 40236032 + 7.44010 NA exon (NM_022120, exon 1 of 1) exon (NM_022120, exon 1 of 1) 1037 NM_022120 64064 Hs.472491 NM_022120 HPRD:15093 OXCT2 SCOTT 3-oxoacid CoA transferase 2 protein-coding 13-PTNLD9-TUMOR_peak_29174 chr2 177042961 177043247 + 7.44010 NA promoter-TSS (NR_110458) promoter-TSS (NR_110458) 210 NR_110457 102800310 Hs.599655 NR_110457 HAGLROS - HAGLR opposite strand (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_18402 chr16 5006204 5006391 + 7.43946 NA Intergenic Intergenic -2021 NM_014692 9717 Hs.512856 NM_014692 ENSG00000103184 SEC14L5 PRELID4B SEC14-like 5 (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_43417 chr6 1336584 1336713 + 7.43946 NA Intergenic Intergenic 23973 NM_033260 94234 Hs.591352 NM_033260 HPRD:17015 FOXQ1 HFH1 forkhead box Q1 protein-coding 13-PTNLD9-TUMOR_peak_14515 chr13 30499719 30499930 + 7.43946 NA intron (NR_047501, intron 1 of 1) intron (NR_047501, intron 1 of 1) 964 NR_047501 100861573 Hs.585619 NR_047501 ENSG00000224405 LINC00572 - long intergenic non-protein coding RNA 572 ncRNA 13-PTNLD9-TUMOR_peak_36662 chr3 169397367 169397494 + 7.43946 NA Intergenic L1PA2|LINE|L1 -15867 NM_004991 2122 Hs.744090 NM_004991 HPRD:01310 MECOM AML1-EVI-1|EVI1|MDS1|MDS1-EVI1|PRDM3 MDS1 and EVI1 complex locus protein-coding 13-PTNLD9-TUMOR_peak_56670 chrX 152786529 152786865 + 7.43367 NA Intergenic Intergenic -14883 NM_001001344 492 Hs.533956 NM_021949 HPRD:02057 ATP2B3 CFAP39|CLA2|OPCA|PMCA3|PMCA3a|SCAX1 ATPase, Ca++ transporting, plasma membrane 3 protein-coding 13-PTNLD9-TUMOR_peak_5932 chr1 235010426 235010584 + 7.43367 NA Intergenic L3|LINE|CR1 150716 NR_038856 100506810 Hs.586634 NR_038856 ENSG00000227630 LINC01132 - long intergenic non-protein coding RNA 1132 ncRNA 13-PTNLD9-TUMOR_peak_22945 chr18 34019312 34019461 + 7.43367 NA intron (NM_001281739, intron 3 of 23) intron (NM_001281739, intron 3 of 23) 141727 NM_001281739 80206 Hs.630884 NM_025135 HPRD:16894 FHOD3 FHOS2|Formactin2 formin homology 2 domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_10690 chr11 76383586 76383703 + 7.43367 NA Intergenic Intergenic -1853 NM_001128922 2615 Hs.151641 NM_005512 HPRD:00667 LRRC32 D11S833E|GARP leucine rich repeat containing 32 protein-coding 13-PTNLD9-TUMOR_peak_32163 chr21 34603273 34603490 + 7.43367 NA intron (NM_207584, intron 1 of 8) intron (NM_207584, intron 1 of 8) 1181 NM_207584 3455 Hs.708195 NM_000874 HPRD:03850 IFNAR2 IFN-R|IFN-alpha-REC|IFNABR|IFNARB interferon (alpha, beta and omega) receptor 2 protein-coding 13-PTNLD9-TUMOR_peak_19872 chr16 81208409 81208560 + 7.43367 NA exon (NM_001278423, exon 5 of 7) exon (NM_001278423, exon 5 of 7) 6483 NM_001278423 114780 Hs.413525 NM_052892 HPRD:06990 PKD1L2 PC1L2 polycystic kidney disease 1-like 2 protein-coding 13-PTNLD9-TUMOR_peak_31952 chr21 16299442 16299640 + 7.43367 NA Intergenic L1PA2|LINE|L1 137585 NM_003489 8204 Hs.155017 NM_003489 HPRD:03927 NRIP1 RIP140 nuclear receptor interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_26496 chr2 30569780 30570041 + 7.43367 NA non-coding (NR_122048, exon 1 of 2) non-coding (NR_122048, exon 1 of 2) 398 NR_122048 285043 Hs.429119 NR_122048 LOC285043 - uncharacterized LOC285043 ncRNA 13-PTNLD9-TUMOR_peak_51859 chr8 125267142 125267280 + 7.43367 NA Intergenic Intergenic -7572 NR_125420 101927588 Hs.617072 NR_125420 ENSG00000214803 LOC101927588 - uncharacterized LOC101927588 ncRNA 13-PTNLD9-TUMOR_peak_23111 chr18 45820465 45820566 + 7.43367 NA Intergenic Intergenic -156835 NM_001039360 201501 Hs.515388 NM_001039360 ENSG00000184828 ZBTB7C APM-1|APM1|ZBTB36|ZNF857C zinc finger and BTB domain containing 7C protein-coding 13-PTNLD9-TUMOR_peak_13733 chr12 108523200 108523498 + 7.43367 NA promoter-TSS (NM_014653) promoter-TSS (NM_014653) -162 NM_014653 9671 Hs.143591 NM_014653 HPRD:17196 WSCD2 - WSC domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_42150 chr5 134476615 134476739 + 7.43367 NA intron (NM_001277348, intron 2 of 5) intron (NM_001277348, intron 2 of 5) -100940 NR_105050 101927953 Hs.436898 NR_105049 ENSG00000249082 C5orf66-AS1 CTC-276P9.1 C5orf66 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_47697 chr7 63250054 63250414 + 7.43367 NA Intergenic CpG 168766 NR_036270 100422848 NR_036270 miRBase:MI0015982 MIR4283-2 - microRNA 4283-2 ncRNA 13-PTNLD9-TUMOR_peak_32262 chr21 37582473 37582584 + 7.43367 NA intron (NM_005128, intron 5 of 36) AluSx|SINE|Alu 45689 NM_005128 9980 Hs.204575 NM_005128 HPRD:07271 DOPEY2 21orf5|C21orf5 dopey family member 2 protein-coding 13-PTNLD9-TUMOR_peak_6115 chr1 244377721 244377864 + 7.43367 NA Intergenic Intergenic -138145 NM_001276349 200159 Hs.442703 NM_001012970 HPRD:13168 C1orf100 - chromosome 1 open reading frame 100 protein-coding 13-PTNLD9-TUMOR_peak_23294 chr18 56029316 56029482 + 7.43367 NA intron (NM_001243960, intron 17 of 28) intron (NM_001243960, intron 17 of 28) -88907 NR_029667 406906 NR_029667 miRBase:MI0000442 MIR122 MIR122A|MIRN122|MIRN122A|hsa-mir-122|miRNA122|miRNA122A microRNA 122 ncRNA 13-PTNLD9-TUMOR_peak_26121 chr2 11076414 11076567 + 7.43367 NA Intergenic Intergenic 24427 NM_002236 3754 Hs.23735 NM_002236 HPRD:04808 KCNF1 IK8|KCNF|KV5.1|kH1 potassium voltage-gated channel, subfamily F, member 1 protein-coding 13-PTNLD9-TUMOR_peak_21041 chr17 39686563 39686677 + 7.43367 NA Intergenic Intergenic -1979 NM_002276 3880 Hs.654568 NM_002276 HPRD:01007 KRT19 CK19|K19|K1CS keratin 19 protein-coding 13-PTNLD9-TUMOR_peak_16295 chr14 75917154 75917315 + 7.43367 NA intron (NM_130469, intron 2 of 3) intron (NM_130469, intron 2 of 3) 18397 NM_001135049 122953 Hs.196482 NM_130469 HPRD:16360 JDP2 JUNDM2 Jun dimerization protein 2 protein-coding 13-PTNLD9-TUMOR_peak_19978 chr16 85415702 85415866 + 7.43337 NA Intergenic Intergenic -75853 NR_049816 100847022 NR_049816 miRBase:MI0017982 MIR5093 - microRNA 5093 ncRNA 13-PTNLD9-TUMOR_peak_13695 chr12 106532863 106533211 + 7.43337 NA 5' UTR (NM_014840, exon 1 of 7) 5' UTR (NM_014840, exon 1 of 7) 774 NM_014840 9891 Hs.524692 NM_014840 HPRD:12171 NUAK1 ARK5 NUAK family, SNF1-like kinase, 1 protein-coding 13-PTNLD9-TUMOR_peak_906 chr1 30435774 30435891 + 7.43337 NA Intergenic Intergenic 74627 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LOC101929406 - uncharacterized LOC101929406 ncRNA 13-PTNLD9-TUMOR_peak_27963 chr2 109335822 109336072 + 7.43337 NA promoter-TSS (NM_006267) promoter-TSS (NM_006267) 10 NM_006267 5903 Hs.199561 NM_006267 HPRD:03111 RANBP2 ADANE|ANE1|IIAE3|NUP358|TRP1|TRP2 RAN binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_7576 chr10 70631840 70631986 + 7.43337 NA intron (NM_001130161, intron 1 of 4) intron (NM_001130161, intron 1 of 4) -29121 NM_024045 79009 Hs.522984 NM_024045 HPRD:09910 DDX50 GU2|GUB|RH-II/GuB|mcdrh DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 protein-coding 13-PTNLD9-TUMOR_peak_6162 chr1 246160246 246160363 + 7.43337 NA intron (NM_022743, intron 5 of 11) intron (NM_022743, intron 5 of 11) 420410 NM_022743 64754 Hs.567571 NM_022743 HPRD:12297 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_31210 chr20 44519896 44520151 + 7.43337 NA promoter-TSS (NM_080749) promoter-TSS (NM_080749) -97 NM_080749 140825 Hs.517094 NM_080749 HPRD:16353 NEURL2 C20orf163|OZZ|OZZ-E3 neuralized E3 ubiquitin protein ligase 2 protein-coding 13-PTNLD9-TUMOR_peak_23041 chr18 43531460 43531590 + 7.43098 NA intron (NM_020964, intron 3 of 43) AluSx1|SINE|Alu 15780 NM_020964 57724 Hs.514843 NM_020964 HPRD:11157 EPG5 HEEW1|KIAA1632|VICIS|hEPG5 ectopic P-granules autophagy protein 5 homolog (C. elegans) protein-coding 13-PTNLD9-TUMOR_peak_42432 chr5 142225693 142225808 + 7.43098 NA intron (NM_015071, intron 1 of 22) intron (NM_015071, intron 1 of 22) 22725 NR_046680 100874239 Hs.570896 NR_046680 ENSG00000226272 ARHGAP26-AS1 - ARHGAP26 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_28972 chr2 165871676 165871780 + 7.43098 NA Intergenic Intergenic -59693 NM_173512 151258 Hs.658702 NM_173512 HPRD:08267 SLC38A11 AVT2 solute carrier family 38, member 11 protein-coding 13-PTNLD9-TUMOR_peak_42242 chr5 138073450 138073785 + 7.43098 NA Intergenic Intergenic -15468 NM_001290309 1495 Hs.445981 NM_001903 HPRD:00285 CTNNA1 CAP102 catenin (cadherin-associated protein), alpha 1, 102kDa protein-coding 13-PTNLD9-TUMOR_peak_32072 chr21 30375088 30375300 + 7.43098 NA Intergenic CpG -9917 NM_015565 26046 Hs.288773 NM_015565 HPRD:10327 LTN1 C21orf10|C21orf98|RNF160|ZNF294 listerin E3 ubiquitin protein ligase 1 protein-coding 13-PTNLD9-TUMOR_peak_5400 chr1 218648593 218648843 + 7.43098 NA Intergenic MIR|SINE|MIR 32750 NR_125715 103611157 Hs.133379 NR_125715 TGFB2-OT1 - TGFB2 overlapping transcript 1 ncRNA 13-PTNLD9-TUMOR_peak_51470 chr8 103508693 103508787 + 7.43098 NA Intergenic LTR78|LTR|ERV1 -55108 NM_024410 4956 Hs.159274 NM_024410 HPRD:01687 ODF1 CT133|HSPB10|ODF|ODF2|ODF27|ODFP|ODFPG|ODFPGA|ODFPGB|RT7|SODF outer dense fiber of sperm tails 1 protein-coding 13-PTNLD9-TUMOR_peak_38982 chr4 103361106 103361208 + 7.43098 NA Intergenic Intergenic -61329 NM_003998 4790 Hs.618430 NM_003998 HPRD:01238 NFKB1 EBP-1|KBF1|NF-kB1|NF-kappa-B|NF-kappaB|NFKB-p105|NFKB-p50|NFkappaB|p105|p50 nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 protein-coding 13-PTNLD9-TUMOR_peak_38920 chr4 96884736 96884868 + 7.43098 NA Intergenic X6B_LINE|LINE|CR1 123563 NM_005390 5161 Hs.131361 NM_005390 HPRD:01531 PDHA2 PDHAL pyruvate dehydrogenase (lipoamide) alpha 2 protein-coding 13-PTNLD9-TUMOR_peak_38596 chr4 75608022 75608244 + 7.43098 NA Intergenic L1MA2|LINE|L1 111749 NM_001729 685 Hs.710156 NM_001729 BTC - betacellulin protein-coding 13-PTNLD9-TUMOR_peak_41883 chr5 123145456 123145606 + 7.43098 NA Intergenic Intergenic 264420 NM_004384 1456 Hs.129206 NM_004384 HPRD:05034 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1, gamma 3 protein-coding 13-PTNLD9-TUMOR_peak_3011 chr1 117210312 117210432 + 7.43098 NA promoter-TSS (NM_001542) promoter-TSS (NM_001542) 5 NM_001007237 3321 Hs.171057 NM_001542 HPRD:04602 IGSF3 EWI-3|V8 immunoglobulin superfamily, member 3 protein-coding 13-PTNLD9-TUMOR_peak_12299 chr12 22488611 22488764 + 7.43098 NA Intergenic Intergenic -1039 NM_003034 6489 Hs.408614 NM_003034 HPRD:03078 ST8SIA1 GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_25953 chr2 1773655 1773925 + 7.43098 NA Intergenic Intergenic -25471 NM_012293 7837 Hs.332197 NM_012293 ENSG00000130508 PXDN COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO peroxidasin homolog (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_54404 chr9 112232074 112232170 + 7.43098 NA intron (NM_002829, intron 1 of 25) intron (NM_002829, intron 1 of 25) -18458 NM_001145370 5774 Hs.436429 NM_002829 HPRD:06767 PTPN3 PTP-H1|PTPH1 protein tyrosine phosphatase, non-receptor type 3 protein-coding 13-PTNLD9-TUMOR_peak_30715 chr20 30048390 30048514 + 7.43098 NA Intergenic Intergenic 12364 NM_001037500 245937 Hs.381373 NM_001037500 HPRD:18759 DEFB124 DEFB-24 defensin, beta 124 protein-coding 13-PTNLD9-TUMOR_peak_28860 chr2 160106568 160106743 + 7.43098 NA intron (NM_152528, intron 9 of 10) LTR40a|LTR|ERVL 36408 NM_152528 151525 Hs.20848 NM_152528 HPRD:08773 WDSUB1 UBOX6|WDSAM1 WD repeat, sterile alpha motif and U-box domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_34739 chr3 57041077 57041419 + 7.43098 NA intron (NM_001128615, intron 2 of 12) intron (NM_001128615, intron 2 of 12) -53221 NM_181727 353324 Hs.129794 NM_181727 HPRD:15426 SPATA12 SRG5 spermatogenesis associated 12 protein-coding 13-PTNLD9-TUMOR_peak_24314 chr19 17422831 17423140 + 7.42993 NA intron (NM_024050, intron 1 of 4) MIRb|SINE|MIR 2648 NM_024050 79016 Hs.466154 NM_024050 HPRD:15107 DDA1 C19orf58|PCIA1 DET1 and DDB1 associated 1 protein-coding 13-PTNLD9-TUMOR_peak_24358 chr19 17984700 17985063 + 7.42700 NA intron (NM_000453, intron 1 of 14) CpG 2099 NM_000453 6528 Hs.584804 NM_000453 HPRD:03504 SLC5A5 NIS|TDH1 solute carrier family 5 (sodium/iodide cotransporter), member 5 protein-coding 13-PTNLD9-TUMOR_peak_23430 chr18 68091311 68091511 + 7.42700 NA Intergenic Intergenic -39584 NR_110764 101060542 Hs.586967 NR_110764 ENSG00000266278 LOC101060542 - uncharacterized LOC101060542 ncRNA 13-PTNLD9-TUMOR_peak_8178 chr10 102792482 102792644 + 7.42700 NA intron (NM_030971, intron 2 of 11) intron (NM_030971, intron 2 of 11) 1567 NM_030971 81855 Hs.283844 NM_030971 HPRD:15329 SFXN3 BA108L7.2|SFX3 sideroflexin 3 protein-coding 13-PTNLD9-TUMOR_peak_1274 chr1 40284256 40284370 + 7.42700 NA Intergenic MER91A|DNA|hAT-Tip100 -29780 NM_001720 656 Hs.734367 NM_001720 BMP8B BMP8|OP2 bone morphogenetic protein 8b protein-coding 13-PTNLD9-TUMOR_peak_12873 chr12 53364058 53364291 + 7.42700 NA Intergenic Intergenic -20524 NM_001256293 3856 Hs.533782 NM_002273 HPRD:01015 KRT8 CARD2|CK-8|CK8|CYK8|K2C8|K8|KO keratin 8 protein-coding 13-PTNLD9-TUMOR_peak_17065 chr15 40339921 40340117 + 7.42700 NA intron (NR_040060, intron 2 of 2) intron (NR_040060, intron 2 of 2) 8507 NR_040059 100131089 Hs.386000 NR_040059 ENSG00000248508 SRP14-AS1 - SRP14 antisense RNA1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_35986 chr3 133525146 133525303 + 7.42700 NA intron (NM_021203, intron 2 of 7) intron (NM_021203, intron 2 of 7) 22347 NM_021203 58477 Hs.12152 NM_021203 HPRD:18105 SRPRB APMCF1 signal recognition particle receptor, B subunit protein-coding 13-PTNLD9-TUMOR_peak_22666 chr18 13727138 13727288 + 7.42700 NA promoter-TSS (NM_152352) promoter-TSS (NM_152352) 509 NM_003799 8731 Hs.592347 NM_003799 HPRD:04622 RNMT MET|RG7MT1|hCMT1c RNA (guanine-7-) methyltransferase protein-coding 13-PTNLD9-TUMOR_peak_25030 chr19 41724800 41724906 + 7.42700 NA promoter-TSS (NM_001699) promoter-TSS (NM_001699) -251 NM_021913 558 Hs.590970 NM_001699 HPRD:00171 AXL JTK11|UFO AXL receptor tyrosine kinase protein-coding 13-PTNLD9-TUMOR_peak_7323 chr10 50015970 50016208 + 7.42700 NA intron (NM_020945, intron 28 of 61) intron (NM_020945, intron 28 of 61) 106191 NM_001006939 474354 Hs.202438 NM_001006939 HPRD:17450 LRRC18 UNQ933|UNQ9338|VKGE9338 leucine rich repeat containing 18 protein-coding 13-PTNLD9-TUMOR_peak_35885 chr3 129829532 129829696 + 7.42670 NA intron (NR_024252, intron 1 of 4) intron (NR_024252, intron 1 of 4) 662 NR_024252 729375 Hs.123633 NR_024252 FAM86HP - family with sequence similarity 86, member A pseudogene pseudo 13-PTNLD9-TUMOR_peak_19989 chr16 85644198 85644445 + 7.42511 NA promoter-TSS (NM_001134473) promoter-TSS (NM_001134473) -708 NM_001134473 23199 Hs.461647 NM_014615 HPRD:11066 GSE1 KIAA0182 Gse1 coiled-coil protein protein-coding 13-PTNLD9-TUMOR_peak_20147 chr16 89767374 89767499 + 7.42470 NA exon (NM_152339, exon 2 of 3) exon (NM_152339, exon 2 of 3) 685 NM_152339 124044 Hs.374556 NM_152339 HPRD:14515 SPATA2L C16orf76|tamo spermatogenesis associated 2-like protein-coding 13-PTNLD9-TUMOR_peak_3952 chr1 156562474 156562592 + 7.41536 NA intron (NM_144772, intron 4 of 5) intron (NM_144772, intron 4 of 5) 975 NM_144772 128240 Hs.528320 NM_144772 HPRD:16397 APOA1BP AIBP|YJEFN1 apolipoprotein A-I binding protein protein-coding 13-PTNLD9-TUMOR_peak_42109 chr5 133772661 133772808 + 7.41536 NA Intergenic Intergenic -1996 NR_105044 102546229 NR_105044 LOC102546229 - uncharacterized LOC102546229 ncRNA 13-PTNLD9-TUMOR_peak_41032 chr5 61699347 61699513 + 7.41238 NA intron (NM_014473, intron 1 of 11) CpG 298 NM_014473 27292 Hs.731665 NM_014473 HPRD:13676 DIMT1 DIM1|DIMT1L|HSA9761|HUSSY5 DIM1 dimethyladenosine transferase 1 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_53372 chr9 46324943 46325046 + 7.41238 NA Intergenic Intergenic 62379 NR_103714 100289124 Hs.567050 NM_001024608 ENSG00000237198 FAM27E2 FAM27E1 family with sequence similarity 27, member E2 ncRNA 13-PTNLD9-TUMOR_peak_49763 chr7 153736969 153737080 + 7.41238 NA intron (NM_001039350, intron 1 of 25) intron (NM_001039350, intron 1 of 25) -12479 NM_130797 1804 Hs.490684 NM_001936 HPRD:00525 DPP6 DPPX|VF2 dipeptidyl-peptidase 6 protein-coding 13-PTNLD9-TUMOR_peak_28806 chr2 157256928 157257060 + 7.41238 NA Intergenic CpG -34971 NM_001083112 2820 Hs.512382 NM_000408 HPRD:00715 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 (mitochondrial) protein-coding 13-PTNLD9-TUMOR_peak_1654 chr1 47270742 47270909 + 7.40848 NA intron (NM_001099772, intron 1 of 11) intron (NM_001099772, intron 1 of 11) 6155 NM_000779 1580 Hs.436317 NM_000779 HPRD:00491 CYP4B1 CYPIVB1|P-450HP cytochrome P450, family 4, subfamily B, polypeptide 1 protein-coding 13-PTNLD9-TUMOR_peak_52315 chr8 141468238 141468388 + 7.40734 NA promoter-TSS (NM_001160372) promoter-TSS (NM_001160372) 365 NM_031466 83696 Hs.654911 NM_031466 HPRD:18136 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|TRS120 trafficking protein particle complex 9 protein-coding 13-PTNLD9-TUMOR_peak_30940 chr20 35492184 35492321 + 7.40734 NA promoter-TSS (NM_080627) promoter-TSS (NM_080627) -165 NM_080627 140710 Hs.460807 NM_080627 HPRD:11116 SOGA1 C20orf117|KIAA0889|SOGA suppressor of glucose, autophagy associated 1 protein-coding 13-PTNLD9-TUMOR_peak_22285 chr17 79700893 79701002 + 7.40613 NA Intergenic Intergenic 21681 NM_001270953 1468 Hs.548187 NM_012140 HPRD:08424 SLC25A10 DIC solute carrier family 25 (mitochondrial carrier; dicarboxylate transporter), member 10 protein-coding 13-PTNLD9-TUMOR_peak_25205 chr19 47289716 47289895 + 7.40613 NA intron (NM_005628, intron 1 of 7) intron (NM_005628, intron 1 of 7) 740 NM_001145144 6510 Hs.631582 NM_005628 HPRD:00173 SLC1A5 AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC solute carrier family 1 (neutral amino acid transporter), member 5 protein-coding 13-PTNLD9-TUMOR_peak_22948 chr18 34286346 34286664 + 7.39982 NA intron (NM_001281739, intron 13 of 23) intron (NM_001281739, intron 13 of 23) -122575 NM_020776 57536 Hs.4045 NM_020776 HPRD:17211 KIAA1328 - KIAA1328 protein-coding 13-PTNLD9-TUMOR_peak_19307 chr16 50279361 50279624 + 7.39982 NA Intergenic Intergenic -20959 NM_001286057 113 Hs.513578 NM_001114 HPRD:02663 ADCY7 AC7 adenylate cyclase 7 protein-coding 13-PTNLD9-TUMOR_peak_14551 chr13 31773996 31774110 + 7.39982 NA promoter-TSS (NM_194318) promoter-TSS (NM_194318) -59 NM_194318 145173 Hs.13205 NM_194318 HPRD:12513 B3GALTL B3GLCT|B3GTL|B3Glc-T|Gal-T|beta3Glc-T beta 1,3-galactosyltransferase-like protein-coding 13-PTNLD9-TUMOR_peak_1339 chr1 41433436 41433683 + 7.39982 NA Intergenic L2a|LINE|L2 -11412 NR_125440 1503 Hs.473087 NM_001905 HPRD:00465 CTPS1 CTPS|IMD24 CTP synthase 1 protein-coding 13-PTNLD9-TUMOR_peak_52836 chr9 18393809 18393969 + 7.39982 NA Intergenic MLT1L|LTR|ERVL-MaLR -80190 NM_052866 92949 Hs.741483 NM_052866 HPRD:16462 ADAMTSL1 ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN ADAMTS-like 1 protein-coding 13-PTNLD9-TUMOR_peak_45688 chr6 89069957 89070070 + 7.39982 NA Intergenic Intergenic 179075 NR_110867 101928936 Hs.533080 NR_110867 LOC101928936 - uncharacterized LOC101928936 ncRNA 13-PTNLD9-TUMOR_peak_40317 chr5 10583691 10583786 + 7.39982 NA intron (NM_001164440, intron 1 of 3) intron (NM_001164440, intron 1 of 3) 19303 NM_001164440 651746 Hs.26039 NM_001164440 ANKRD33B - ankyrin repeat domain 33B protein-coding 13-PTNLD9-TUMOR_peak_11224 chr11 112163921 112164041 + 7.39982 NA Intergenic Kanga1c|DNA|TcMar-Tc2 -32398 NM_001145024 349633 Hs.632097 NM_001145024 ENSG00000188771 PLET1 C11orf34 placenta expressed transcript 1 protein-coding 13-PTNLD9-TUMOR_peak_13956 chr12 117302610 117302844 + 7.39670 NA intron (NM_003806, intron 1 of 1) intron (NM_003806, intron 1 of 1) 16505 NR_073189 8739 Hs.87247 NM_003806 HRK DP5|HARAKIRI harakiri, BCL2 interacting protein protein-coding 13-PTNLD9-TUMOR_peak_33940 chr3 15469015 15469154 + 7.39670 NA promoter-TSS (NM_152396) promoter-TSS (NM_152396) 20 NM_033083 85403 Hs.716733 NM_033083 HPRD:12209 EAF1 - ELL associated factor 1 protein-coding 13-PTNLD9-TUMOR_peak_39459 chr4 141217611 141217847 + 7.39670 NA intron (NR_033939, intron 2 of 4) intron (NR_033939, intron 2 of 4) 39289 NM_032547 60592 Hs.480815 NM_032547 HPRD:18027 SCOC SCOCO short coiled-coil protein protein-coding 13-PTNLD9-TUMOR_peak_43224 chr5 177366419 177366685 + 7.39670 NA Intergenic CpG 56691 NM_006261 5626 Hs.158301 NM_006261 HPRD:03325 PROP1 CPHD2|PROP-1 PROP paired-like homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_7984 chr10 91043252 91043391 + 7.39670 NA Intergenic Intergenic -18385 NM_001547 3433 Hs.437609 NM_001547 HPRD:00913 IFIT2 G10P2|GARG-39|IFI-54|IFI-54K|IFI54|IFIT-2|ISG-54 K|ISG-54K|ISG54|P54|cig42 interferon-induced protein with tetratricopeptide repeats 2 protein-coding 13-PTNLD9-TUMOR_peak_29749 chr2 213770324 213770594 + 7.39670 NA Intergenic Intergenic -20522 NR_039935 100616267 NR_039935 miRBase:MI0017419 MIR4776-1 - microRNA 4776-1 ncRNA 13-PTNLD9-TUMOR_peak_13237 chr12 68075025 68075183 + 7.39670 NA Intergenic Intergenic 32592 NM_003583 8445 Hs.173135 NM_003583 DYRK2 - dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_55608 chrX 19160900 19161091 + 7.39670 NA Intergenic L1PA2|LINE|L1 -20240 NM_001184837 10149 Hs.146978 NM_005756 HPRD:04040 GPR64 EDDM6|HE6|TM7LN2 G protein-coupled receptor 64 protein-coding 13-PTNLD9-TUMOR_peak_14480 chr13 28024542 28024802 + 7.39670 NA promoter-TSS (NM_001166261) promoter-TSS (NM_001166261) 67 NM_001166263 219402 Hs.534582 NM_152912 HPRD:17609 MTIF3 IF3mt mitochondrial translational initiation factor 3 protein-coding 13-PTNLD9-TUMOR_peak_10722 chr11 77773031 77773280 + 7.39670 NA intron (NR_046948, intron 1 of 2) intron (NR_046948, intron 1 of 2) -1752 NM_003251 7069 Hs.591969 NM_003251 HPRD:03566 THRSP LPGP1|Lpgp|S14|SPOT14|THRP thyroid hormone responsive protein-coding 13-PTNLD9-TUMOR_peak_30029 chr2 233457504 233457688 + 7.39670 NA Intergenic Intergenic -13171 NM_001243252 80303 Hs.516769 NM_025202 HPRD:13265 EFHD1 MST133|MSTP133|SWS2 EF-hand domain family, member D1 protein-coding 13-PTNLD9-TUMOR_peak_29846 chr2 219761383 219761550 + 7.39670 NA Intergenic Intergenic 16211 NM_025216 80326 Hs.121540 NM_025216 HPRD:16207 WNT10A OODD|SSPS|STHAG4 wingless-type MMTV integration site family, member 10A protein-coding 13-PTNLD9-TUMOR_peak_23773 chr19 6273753 6274023 + 7.39670 NA intron (NM_005934, intron 1 of 11) intron (NM_005934, intron 1 of 11) 6071 NM_005934 4298 Hs.10095 NM_005934 MLLT1 ENL|LTG19|YEATS1 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 1 protein-coding 13-PTNLD9-TUMOR_peak_26347 chr2 26200772 26200965 + 7.39670 NA intron (NM_002254, intron 1 of 7) intron (NM_002254, intron 1 of 7) 4575 NM_002254 3797 Hs.21611 NM_002254 HPRD:04164 KIF3C - kinesin family member 3C protein-coding 13-PTNLD9-TUMOR_peak_28682 chr2 149372031 149372130 + 7.39670 NA Intergenic MLT1M|LTR|ERVL-MaLR -30480 NM_015630 26122 Hs.23270 NM_015630 HPRD:13274 EPC2 EPC-LIKE enhancer of polycomb homolog 2 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_15838 chr14 55596456 55596642 + 7.39670 NA intron (NM_001177388, intron 1 of 5) CpG 614 NM_002306 3958 Hs.531081 NM_002306 HPRD:01090 LGALS3 CBP35|GAL3|GALBP|GALIG|L31|LGALS2|MAC2 lectin, galactoside-binding, soluble, 3 protein-coding 13-PTNLD9-TUMOR_peak_21396 chr17 47531547 47531658 + 7.39670 NA Intergenic Intergenic 7509 NR_110805 101927207 Hs.638402 NR_110805 ENSG00000249497 LOC101927207 - uncharacterized LOC101927207 ncRNA 13-PTNLD9-TUMOR_peak_6016 chr1 237068515 237068623 + 7.39670 NA Intergenic Tigger14a|DNA|TcMar-Tigger 99149 NM_001276687 645745 Hs.632513 NM_001039954 ENSG00000244020 MT1HL1 MT1P2 metallothionein 1H-like 1 protein-coding 13-PTNLD9-TUMOR_peak_24404 chr19 18509901 18510141 + 7.39670 NA Intergenic Intergenic -1606 NM_145256 126364 Hs.332156 NM_145256 HPRD:09597 LRRC25 MAPA leucine rich repeat containing 25 protein-coding 13-PTNLD9-TUMOR_peak_34448 chr3 46887389 46887673 + 7.39670 NA Intergenic Intergenic -11946 NM_182702 339906 Hs.585127 NM_182702 HPRD:07156 PRSS42 TESSP2 protease, serine, 42 protein-coding 13-PTNLD9-TUMOR_peak_10672 chr11 75880826 75880964 + 7.39670 NA Intergenic Intergenic 36679 NM_004626 7481 Hs.108219 NM_004626 HPRD:04741 WNT11 HWNT11 wingless-type MMTV integration site family, member 11 protein-coding 13-PTNLD9-TUMOR_peak_37106 chr3 187103173 187103336 + 7.39670 NA Intergenic Intergenic 17086 NM_022147 64108 Hs.43388 NM_022147 RTP4 IFRG28|Z3CXXC4 receptor (chemosensory) transporter protein 4 protein-coding 13-PTNLD9-TUMOR_peak_8373 chr10 115786322 115786423 + 7.39670 NA Intergenic Intergenic -17434 NM_000684 153 Hs.99913 NM_000684 HPRD:00181 ADRB1 ADRB1R|B1AR|BETA1AR|RHR adrenoceptor beta 1 protein-coding 13-PTNLD9-TUMOR_peak_16288 chr14 75697293 75697488 + 7.39670 NA Intergenic MIRb|SINE|MIR -48091 NM_005252 2353 Hs.25647 NM_005252 HPRD:01275 FOS AP-1|C-FOS|p55 FBJ murine osteosarcoma viral oncogene homolog protein-coding 13-PTNLD9-TUMOR_peak_6242 chr10 670608 670747 + 7.39670 NA intron (NM_014974, intron 1 of 36) intron (NM_014974, intron 1 of 36) 17041 NR_049884 100847086 NR_049884 MIR5699 - microRNA 5699 ncRNA 13-PTNLD9-TUMOR_peak_5449 chr1 221508810 221508964 + 7.39670 NA intron (NR_024236, intron 1 of 1) intron (NR_024236, intron 1 of 1) 751 NR_024236 400804 Hs.722626 NR_024236 HPRD:17386 C1orf140 - uncharacterized LOC400804 ncRNA 13-PTNLD9-TUMOR_peak_5065 chr1 203146717 203146843 + 7.39670 NA Intergenic Intergenic -1838 NM_004997 4608 Hs.927 NM_004997 HPRD:01186 MYBPH - myosin binding protein H protein-coding 13-PTNLD9-TUMOR_peak_1990 chr1 61275529 61275685 + 7.39670 NA intron (NR_110628, intron 1 of 5) intron (NR_110628, intron 1 of 5) 15649 NR_110628 101926964 Hs.650459 NR_110628 ENSG00000231252 LOC101926964 - uncharacterized LOC101926964 ncRNA 13-PTNLD9-TUMOR_peak_42486 chr5 145422226 145422396 + 7.39670 NA intron (NM_152550, intron 5 of 9) intron (NM_152550, intron 5 of 9) 61635 NM_001029869 153770 Hs.162369 NM_001029869 HPRD:18737 PLAC8L1 - PLAC8-like 1 protein-coding 13-PTNLD9-TUMOR_peak_46091 chr6 134757255 134757618 + 7.39670 NA Intergenic Intergenic -1418 NR_038216 154092 Hs.223718 NR_038216 LINC01010 - long intergenic non-protein coding RNA 1010 ncRNA 13-PTNLD9-TUMOR_peak_51869 chr8 125537915 125538064 + 7.39670 NA intron (NM_032026, intron 1 of 11) intron (NM_032026, intron 1 of 11) 13340 NM_001146160 83940 Hs.170568 NM_032026 HPRD:11621 TATDN1 - TatD DNase domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_35828 chr3 128597732 128597834 + 7.39036 NA promoter-TSS (NR_033426) promoter-TSS (NR_033426) -550 NR_033426 28976 Hs.567482 NM_014049 HPRD:12412 ACAD9 NPD002 acyl-CoA dehydrogenase family, member 9 protein-coding 13-PTNLD9-TUMOR_peak_37152 chr3 188514010 188514131 + 7.38896 NA intron (NM_001167671, intron 8 of 10) L2a|LINE|L2 151358 NR_046873 100874043 Hs.616287 NR_046873 TPRG1-AS1 - TPRG1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_51863 chr8 125438283 125438464 + 7.38896 NA Intergenic Intergenic -24675 NM_017956 55039 Hs.9925 NM_017956 HPRD:07947 TRMT12 TRM12|TYW2 tRNA methyltransferase 12 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_52889 chr9 21294408 21294583 + 7.38896 NA Intergenic Intergenic 10817 NM_002169 3442 Hs.37113 NM_002169 HPRD:00953 IFNA5 IFN-alpha-5|IFN-alphaG|INA5|INFA5|leIF G interferon, alpha 5 protein-coding 13-PTNLD9-TUMOR_peak_25522 chr19 52229433 52229568 + 7.38896 NA Intergenic Intergenic -2255 NM_001297436 3036 Hs.57697 NM_001523 HPRD:03271 HAS1 HAS hyaluronan synthase 1 protein-coding 13-PTNLD9-TUMOR_peak_11219 chr11 112066749 112066952 + 7.38896 NA intron (NM_001037290, intron 5 of 11) intron (NM_001037290, intron 5 of 11) 19761 NM_001256397 83875 Hs.728325 NM_031938 HPRD:12522 BCO2 B-DIOX-II|BCDO2 beta-carotene oxygenase 2 protein-coding 13-PTNLD9-TUMOR_peak_2568 chr1 95249043 95249344 + 7.38896 NA intron (NR_104131, intron 1 of 4) intron (NR_104131, intron 1 of 4) 36644 NR_104131 101928079 Hs.596857 NR_104131 LINC01057 - long intergenic non-protein coding RNA 1057 ncRNA 13-PTNLD9-TUMOR_peak_42798 chr5 157581404 157581603 + 7.38896 NA Intergenic Intergenic 255278 NR_109888 101927697 Hs.483960 NR_109888 LOC101927697 - uncharacterized LOC101927697 ncRNA 13-PTNLD9-TUMOR_peak_34805 chr3 61807633 61807799 + 7.38896 NA intron (NM_002841, intron 2 of 29) MIR|SINE|MIR 260473 NM_002841 5793 Hs.595541 NM_002841 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase, receptor type, G protein-coding 13-PTNLD9-TUMOR_peak_17795 chr15 82665870 82666043 + 7.38896 NA intron (NR_004847, intron 1 of 4).2 LTR10G|LTR|ERV1 18602 NR_004847 100134869 Hs.735222 NR_004847 UBE2Q2P2 UBE2Q2P3|UBE2QP2 ubiquitin-conjugating enzyme E2Q family member 2 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_7144 chr10 43555843 43556012 + 7.38896 NA Intergenic Intergenic -16590 NM_020630 5979 Hs.350321 NM_000323 HPRD:01266 RET CDHF12|CDHR16|HSCR1|MEN2A|MEN2B|MTC1|PTC|RET-ELE1|RET51 ret proto-oncogene protein-coding 13-PTNLD9-TUMOR_peak_4420 chr1 172715606 172715711 + 7.38896 NA Intergenic Intergenic 87473 NM_000639 356 Hs.2007 NM_000639 HPRD:00610 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6 Fas ligand (TNF superfamily, member 6) protein-coding 13-PTNLD9-TUMOR_peak_37834 chr4 7632844 7632972 + 7.38896 NA intron (NM_020777, intron 3 of 26) intron (NM_020777, intron 3 of 26) -122909 NR_026892 84740 Hs.663029 NM_032654 ENSG00000272620 AFAP1-AS1 AFAP1-AS|AFAP1AS AFAP1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_14855 chr13 73656767 73656885 + 7.38896 NA Intergenic AluJo|SINE|Alu 23896 NM_001730 688 Hs.508234 NM_001730 HPRD:04212 KLF5 BTEB2|CKLF|IKLF Kruppel-like factor 5 (intestinal) protein-coding 13-PTNLD9-TUMOR_peak_19821 chr16 78606118 78606232 + 7.38896 NA intron (NM_001291997, intron 7 of 7) L1ME3D|LINE|L1 472865 NR_120435 51741 Hs.461453 NM_016373 HPRD:05501 WWOX D16S432E|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 13-PTNLD9-TUMOR_peak_32481 chr21 44789109 44789226 + 7.38896 NA Intergenic Intergenic -37248 NR_103713 100126693 Hs.473952 NR_103713 LINC00322 C21orf136|NCRNA00322 long intergenic non-protein coding RNA 322 ncRNA 13-PTNLD9-TUMOR_peak_47225 chr7 34569922 34570217 + 7.38896 NA intron (NR_033665, intron 2 of 3) intron (NR_033665, intron 2 of 3) -127782 NM_001300934 387129 Hs.652373 NM_207172 HPRD:10547 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_23785 chr19 6694006 6694325 + 7.38896 NA intron (NM_000064, intron 24 of 40) intron (NM_000064, intron 24 of 40) -23566 NM_172014 8740 Hs.129708 NM_003807 HPRD:05157 TNFSF14 CD258|HVEML|LIGHT|LTg|TR2 tumor necrosis factor (ligand) superfamily, member 14 protein-coding 13-PTNLD9-TUMOR_peak_56491 chrX 130975542 130975716 + 7.38896 NA Intergenic Intergenic -10958 NR_026975 286467 Hs.720385 NR_026975 ENSG00000213468 FIRRE LINC01200 firre intergenic repeating RNA element ncRNA 13-PTNLD9-TUMOR_peak_54136 chr9 99850109 99850244 + 7.38896 NA Intergenic MER21C|LTR|ERVL -5949 NR_002942 340508 Hs.680438 NR_002942 ENSG00000228376 GAS2L1P2 - growth arrest-specific 2 like 1 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_40600 chr5 35396635 35396782 + 7.38896 NA Intergenic L1PA3|LINE|L1 -166017 NM_000949 5618 Hs.368587 NM_000949 HPRD:01457 PRLR HPRL|MFAB|hPRLrI prolactin receptor protein-coding 13-PTNLD9-TUMOR_peak_16848 chr15 27467737 27467971 + 7.38896 NA intron (NM_033223, intron 3 of 9) intron (NM_033223, intron 3 of 9) -61388 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 LOC101928869 - uncharacterized LOC101928869 ncRNA 13-PTNLD9-TUMOR_peak_29001 chr2 168613023 168613178 + 7.38896 NA Intergenic Intergenic -62082 NM_020981 8708 Hs.735833 NM_020981 HPRD:04369 B3GALT1 beta3Gal-T1 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1 protein-coding 13-PTNLD9-TUMOR_peak_54948 chr9 134510849 134510964 + 7.38896 NA intron (NM_005312, intron 5 of 23) intron (NM_005312, intron 5 of 23) 74323 NM_198679 2889 Hs.127897 NM_005312 HPRD:02627 RAPGEF1 C3G|GRF2 Rap guanine nucleotide exchange factor (GEF) 1 protein-coding 13-PTNLD9-TUMOR_peak_48945 chr7 127526114 127526235 + 7.38896 NA intron (NM_014390, intron 12 of 23) intron (NM_014390, intron 12 of 23) -111388 NR_027330 27099 Hs.657377 NM_014411 SND1-IT1 C7orf54|NAG8|NSG-X SND1 intronic transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_21817 chr17 64347153 64347400 + 7.38896 NA intron (NM_002737, intron 2 of 16) intron (NM_002737, intron 2 of 16) 48350 NM_002737 5578 Hs.531704 NM_002737 HPRD:01498 PRKCA AAG6|PKC-alpha|PKCA|PRKACA protein kinase C, alpha protein-coding 13-PTNLD9-TUMOR_peak_11487 chr11 123345112 123345230 + 7.38896 NA Intergenic Intergenic -51173 NM_020716 57476 Hs.144725 NM_020716 ENSG00000023171 GRAMD1B - GRAM domain containing 1B protein-coding 13-PTNLD9-TUMOR_peak_33967 chr3 16245587 16245715 + 7.38896 NA intron (NM_054110, intron 3 of 9) intron (NM_054110, intron 3 of 9) 29467 NM_054110 117248 Hs.411308 NM_054110 HPRD:13563 GALNT15 GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5 polypeptide N-acetylgalactosaminyltransferase 15 protein-coding 13-PTNLD9-TUMOR_peak_29014 chr2 169402255 169402357 + 7.38896 NA intron (NM_203463, intron 1 of 9) intron (NM_203463, intron 1 of 9) -37147 NR_039933 100616356 NR_039933 MIR4774 - microRNA 4774 ncRNA 13-PTNLD9-TUMOR_peak_20841 chr17 31010686 31010792 + 7.38896 NA intron (NM_015194, intron 16 of 21) L1PA2|LINE|L1 193163 NM_015194 4642 Hs.602063 NM_015194 HPRD:07581 MYO1D PPP1R108|myr4 myosin ID protein-coding 13-PTNLD9-TUMOR_peak_14544 chr13 31403417 31403616 + 7.38896 NA Intergenic Intergenic 26173 NR_047012 100874158 Hs.577982 NR_047012 ENSG00000237879 LINC00398 - long intergenic non-protein coding RNA 398 ncRNA 13-PTNLD9-TUMOR_peak_26670 chr2 40590804 40591041 + 7.38896 NA intron (NM_001112800, intron 1 of 8) intron (NM_001112800, intron 1 of 8) 66522 NM_001112801 6546 Hs.31961 NM_021097 HPRD:01659 SLC8A1 NCX1 solute carrier family 8 (sodium/calcium exchanger), member 1 protein-coding 13-PTNLD9-TUMOR_peak_13212 chr12 66843363 66843598 + 7.38896 NA intron (NM_021150, intron 10 of 23) intron (NM_021150, intron 10 of 23) 147145 NM_033647 92797 Hs.505941 NM_033647 HPRD:09979 HELB hDHB helicase (DNA) B protein-coding 13-PTNLD9-TUMOR_peak_6239 chr10 559513 559610 + 7.38896 NA intron (NM_014974, intron 1 of 36) intron (NM_014974, intron 1 of 36) 128157 NR_049884 100847086 NR_049884 MIR5699 - microRNA 5699 ncRNA 13-PTNLD9-TUMOR_peak_30737 chr20 30200718 30200914 + 7.38877 NA Intergenic Intergenic 5827 NR_036161 100422904 NR_036161 miRBase:MI0014238 MIR3193 - microRNA 3193 ncRNA 13-PTNLD9-TUMOR_peak_6871 chr10 32258183 32258836 + 7.38555 NA Intergenic SVA_E|Other|Other -40705 NM_001270698 94134 Hs.499264 NM_018287 HPRD:06446 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 13-PTNLD9-TUMOR_peak_468 chr1 13654209 13654862 + 7.38555 NA intron (NM_001099850, intron 1 of 2) SVA_E|Other|Other 9735 NM_001300891 101929983 NM_001300891 LOC101929983 - PRAME family member 9/15-like protein-coding 13-PTNLD9-TUMOR_peak_28066 chr2 112224423 112224719 + 7.38555 NA intron (NR_024373, intron 1 of 1) intron (NR_024373, intron 1 of 1) 28121 NR_015395 541471 Hs.560805 NR_015395 ENSG00000172965 MIR4435-1HG AGD2|LINC00978 MIR4435-1 host gene (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_6253 chr10 1033146 1033312 + 7.38350 NA Intergenic L3|LINE|CR1 -1120 NM_012341 23560 Hs.215766 NM_012341 HPRD:09976 GTPBP4 CRFG|NGB|NOG1 GTP binding protein 4 protein-coding 13-PTNLD9-TUMOR_peak_49209 chr7 134832665 134832842 + 7.36682 NA promoter-TSS (NM_018295) promoter-TSS (NM_018295) -13 NM_018295 55281 Hs.521213 NM_018295 HPRD:07723 TMEM140 - transmembrane protein 140 protein-coding 13-PTNLD9-TUMOR_peak_44389 chr6 28920989 28921114 + 7.36682 NA Intergenic tRNA-Met_|tRNA|tRNA 9490 NR_103538 729583 Hs.453549 NR_103538 C6orf100 dJ25J6.5 chromosome 6 open reading frame 100 ncRNA 13-PTNLD9-TUMOR_peak_7217 chr10 46762766 46763084 + 7.36682 NA promoter-TSS (NR_003611) promoter-TSS (NR_003611) -33 NR_003611 399761 Hs.571994 NM_001040053 ENSG00000204164 BMS1P5 BMS1LP1|BMS1LP5|BMS1P1|bA556L1.3 BMS1 pseudogene 5 pseudo 13-PTNLD9-TUMOR_peak_43102 chr5 173837774 173837899 + 7.36682 NA intron (NR_125806, intron 1 of 5) intron (NR_125806, intron 1 of 5) 74479 NR_125806 101928176 Hs.436014 NR_125806 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 13-PTNLD9-TUMOR_peak_21600 chr17 56063055 56063155 + 7.36682 NA intron (NM_007146, intron 1 of 5) intron (NM_007146, intron 1 of 5) 2510 NM_007146 7716 Hs.463569 NM_007146 VEZF1 DB1|ZNF161 vascular endothelial zinc finger 1 protein-coding 13-PTNLD9-TUMOR_peak_36486 chr3 156323633 156323801 + 7.36682 NA Intergenic Intergenic -50744 NM_007107 6747 Hs.518346 NM_007107 HPRD:16206 SSR3 TRAPG signal sequence receptor, gamma (translocon-associated protein gamma) protein-coding 13-PTNLD9-TUMOR_peak_47311 chr7 42923751 42923879 + 7.36682 NA Intergenic MER52A|LTR|ERV1 27874 NM_001099858 79020 Hs.698120 NM_024054 HPRD:09861 C7orf25 - chromosome 7 open reading frame 25 protein-coding 13-PTNLD9-TUMOR_peak_35515 chr3 120144852 120144985 + 7.36682 NA intron (NM_007085, intron 2 of 10) intron (NM_007085, intron 2 of 10) 25000 NM_007085 11167 Hs.269512 NM_007085 FSTL1 FRP|FSL1|MIR198 follistatin-like 1 protein-coding 13-PTNLD9-TUMOR_peak_1158 chr1 36952533 36952752 + 7.36682 NA Intergenic Intergenic -3727 NM_156039 1441 Hs.524517 NM_000760 HPRD:00737 CSF3R CD114|GCSFR colony stimulating factor 3 receptor (granulocyte) protein-coding 13-PTNLD9-TUMOR_peak_53901 chr9 90924304 90924398 + 7.36677 NA Intergenic Intergenic -78946 NM_006717 10927 Hs.146804 NM_006717 HPRD:18096 SPIN1 SPIN spindlin 1 protein-coding 13-PTNLD9-TUMOR_peak_1646 chr1 47215246 47215409 + 7.36677 NA Intergenic Intergenic -30591 NM_014774 9813 Hs.707688 NM_014774 HPRD:17191 EFCAB14 KIAA0494 EF-hand calcium binding domain 14 protein-coding 13-PTNLD9-TUMOR_peak_51659 chr8 117466254 117466407 + 7.36677 NA Intergenic AT_rich|Low_complexity|Low_complexity -129033 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 13-PTNLD9-TUMOR_peak_44293 chr6 27145532 27145787 + 7.36677 NA Intergenic CpG 30254 NR_036096 100422934 NR_036096 miRBase:MI0014167 MIR3143 - microRNA 3143 ncRNA 13-PTNLD9-TUMOR_peak_9562 chr11 36477379 36477675 + 7.36677 NA intron (NM_001160168, intron 5 of 5) intron (NM_001160168, intron 5 of 5) 54336 NM_145803 7189 Hs.444172 NM_004620 TRAF6 MGC:3310|RNF85 TNF receptor-associated factor 6, E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_47083 chr7 24859985 24860146 + 7.36542 NA intron (NR_104111, intron 15 of 21) intron (NR_104111, intron 15 of 21) -62426 NM_001127454 1687 Hs.520708 NM_004403 HPRD:02996 DFNA5 ICERE-1 deafness, autosomal dominant 5 protein-coding 13-PTNLD9-TUMOR_peak_28102 chr2 113380201 113380313 + 7.36542 NA Intergenic MIRb|SINE|MIR 21500 NR_033871 400999 Hs.585221 NR_033871 FLJ42351 - uncharacterized LOC400999 ncRNA 13-PTNLD9-TUMOR_peak_44410 chr6 29720345 29720503 + 7.36542 NA Intergenic CpG -1499 NR_001590 340198 Hs.450189 NR_001590 ENSG00000235821 IFITM4P dJ377H14.5 interferon induced transmembrane protein 4 pseudogene pseudo 13-PTNLD9-TUMOR_peak_49743 chr7 153144770 153144908 + 7.36542 NA Intergenic MLT1J1|LTR|ERVL-MaLR -35520 NR_125776 103724390 Hs.614280 NR_125776 LINC01287 TCONS_l2_00027522 long intergenic non-protein coding RNA 1287 ncRNA 13-PTNLD9-TUMOR_peak_18372 chr16 4514214 4514602 + 7.36006 NA intron (NM_020677, intron 4 of 5) L2c|LINE|L2 -10296 NM_001127206 3163 Hs.284279 NM_002134 HPRD:00783 HMOX2 HO-2 heme oxygenase (decycling) 2 protein-coding 13-PTNLD9-TUMOR_peak_18432 chr16 8772529 8772720 + 7.36006 NA intron (NM_020686, intron 1 of 15) intron (NM_020686, intron 1 of 15) 4180 NM_020686 18 Hs.336768 NM_000663 HPRD:00661 ABAT GABA-AT|GABAT|NPD009 4-aminobutyrate aminotransferase protein-coding 13-PTNLD9-TUMOR_peak_21031 chr17 39108927 39109181 + 7.36006 NA Intergenic MIR|SINE|MIR 14090 NM_213656 390792 Hs.28467 NM_213656 HPRD:13750 KRT39 CK-39|K39|KA35 keratin 39 protein-coding 13-PTNLD9-TUMOR_peak_1012 chr1 33238691 33238842 + 7.36006 NA 3' UTR (NM_001198973, exon 5 of 5) 3' UTR (NM_001198973, exon 5 of 5) 7531 NM_001198972 57648 Hs.591502 NM_020888 ENSG00000162522 KIAA1522 - KIAA1522 protein-coding 13-PTNLD9-TUMOR_peak_21649 chr17 57459146 57459356 + 7.36006 NA intron (NM_001005404, intron 2 of 4) intron (NM_001005404, intron 2 of 4) 15807 NR_039882 100616204 NR_039882 MIR4729 - microRNA 4729 ncRNA 13-PTNLD9-TUMOR_peak_48742 chr7 105712046 105712182 + 7.36006 NA Intergenic Intergenic 40677 NM_182715 6856 Hs.80919 NM_006754 HPRD:15459 SYPL1 H-SP1|SYPL synaptophysin-like 1 protein-coding 13-PTNLD9-TUMOR_peak_23280 chr18 55844412 55844626 + 7.36006 NA intron (NM_001243960, intron 2 of 28) intron (NM_001243960, intron 2 of 28) -18103 NM_001144970 23327 Hs.185677 NM_015277 HPRD:05903 NEDD4L NEDD4-2|NEDD4.2|RSP5|hNEDD4-2 neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_51793 chr8 123580982 123581123 + 7.36006 NA Intergenic Intergenic -212849 NM_014943 22882 Hs.377090 NM_014943 HPRD:16458 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 13-PTNLD9-TUMOR_peak_11780 chr12 751987 752520 + 7.36006 NA intron (NR_122124, intron 4 of 4) CpG 598 NM_001294346 4815 Hs.655804 NM_016533 HPRD:09530 NINJ2 - ninjurin 2 protein-coding 13-PTNLD9-TUMOR_peak_1644 chr1 47191043 47191147 + 7.36006 NA Intergenic Intergenic -6359 NM_014774 9813 Hs.707688 NM_014774 HPRD:17191 EFCAB14 KIAA0494 EF-hand calcium binding domain 14 protein-coding 13-PTNLD9-TUMOR_peak_29349 chr2 191208468 191208689 + 7.36006 NA 5' UTR (NM_002194, exon 1 of 6) 5' UTR (NM_002194, exon 1 of 6) 382 NM_002194 3628 Hs.32309 NM_002194 HPRD:00923 INPP1 - inositol polyphosphate-1-phosphatase protein-coding 13-PTNLD9-TUMOR_peak_37136 chr3 187988288 187988476 + 7.36006 NA intron (NM_005578, intron 2 of 10) intron (NM_005578, intron 2 of 10) 45189 NM_001167671 4026 Hs.720220 NM_005578 HPRD:02828 LPP - LIM domain containing preferred translocation partner in lipoma protein-coding 13-PTNLD9-TUMOR_peak_53147 chr9 36103140 36103329 + 7.36006 NA intron (NM_021111, intron 12 of 20) intron (NM_021111, intron 12 of 20) -33299 NR_104641 152007 Hs.493819 NM_022343 HPRD:06187 GLIPR2 C9orf19|GAPR-1|GAPR1 GLI pathogenesis-related 2 protein-coding 13-PTNLD9-TUMOR_peak_2900 chr1 113408929 113409030 + 7.36006 NA Intergenic MER39|LTR|ERV1 -15714 NR_103746 100996702 Hs.632431 NR_103746 ENSG00000215866 LINC01356 - long intergenic non-protein coding RNA 1356 ncRNA 13-PTNLD9-TUMOR_peak_4865 chr1 197100638 197100783 + 7.36006 NA intron (NM_001206846, intron 7 of 26) AluY|SINE|Alu 15114 NM_018136 259266 Hs.121028 NM_018136 HPRD:08384 ASPM ASP|Calmbp1|MCPH5 asp (abnormal spindle) homolog, microcephaly associated (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_36674 chr3 169846930 169847062 + 7.36006 NA exon (NM_024947, exon 8 of 15) exon (NM_024947, exon 8 of 15) 52541 NM_024947 80012 Hs.529592 NM_024947 HPRD:10149 PHC3 EDR3|HPH3 polyhomeotic homolog 3 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_48655 chr7 102251654 102251753 + 7.35975 NA intron (NM_001079877, intron 1 of 19) CpG-24758 5500 NM_001277335 100271927 Hs.530089 NM_001277335 ENSG00000170667 RASA4B - RAS p21 protein activator 4B protein-coding 13-PTNLD9-TUMOR_peak_40436 chr5 16937293 16937410 + 7.35837 NA promoter-TSS (NM_012334) promoter-TSS (NM_012334) -966 NM_012334 4651 Hs.481720 NM_012334 HPRD:03283 MYO10 - myosin X protein-coding 13-PTNLD9-TUMOR_peak_1855 chr1 54954977 54955297 + 7.35837 NA Intergenic CpG -58670 NM_015547 26027 Hs.745173 NM_015547 HPRD:07075 ACOT11 BFIT|STARD14|THEA|THEM1 acyl-CoA thioesterase 11 protein-coding 13-PTNLD9-TUMOR_peak_24919 chr19 39321887 39322133 + 7.35837 NA exon (NM_001398, exon 2 of 10) exon (NM_001398, exon 2 of 10) 487 NM_001398 1891 Hs.196176 NM_001398 HPRD:02825 ECH1 HPXEL enoyl CoA hydratase 1, peroxisomal protein-coding 13-PTNLD9-TUMOR_peak_16130 chr14 69286027 69286181 + 7.35837 NA Intergenic Intergenic -23144 NM_001244701 677 Hs.85155 NM_004926 HPRD:03041 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein-like 1 protein-coding 13-PTNLD9-TUMOR_peak_47942 chr7 73892440 73892841 + 7.35784 NA intron (NM_005685, intron 1 of 26) MIRb|SINE|MIR 24520 NM_001199207 9569 Hs.647056 NM_005685 HPRD:08379 GTF2IRD1 BEN|CREAM1|GTF3|MUSTRD1|RBAP2|WBS|WBSCR11|WBSCR12|hMusTRD1alpha1 GTF2I repeat domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_49435 chr7 142191185 142191316 + 7.35522 NA Intergenic Intergenic -182881 NM_001190487 100463482 NM_001190487 ENSG00000270672 MTRNR2L6 HN6 MT-RNR2-like 6 protein-coding 13-PTNLD9-TUMOR_peak_44520 chr6 31171801 31171987 + 7.35522 NA TTS (NR_026791).3 TTS (NR_026791).3 6357 NR_026791 253018 Hs.659818 NR_026791 HPRD:13637 HCG27 bCX101P6.9|bPG299F13.9|bQB115I13.2 HLA complex group 27 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_37553 chr4 1004391 1004765 + 7.35188 NA Intergenic CpG -1032 NM_001004356 53834 Hs.193326 NM_021923 HPRD:16163 FGFRL1 FGFR5|FHFR fibroblast growth factor receptor-like 1 protein-coding 13-PTNLD9-TUMOR_peak_33795 chr3 12447296 12447462 + 7.34701 NA intron (NM_005037, intron 4 of 6) intron (NM_005037, intron 4 of 6) 54378 NM_015869 5468 Hs.162646 NM_005037 HPRD:03288 PPARG CIMT1|GLM1|NR1C3|PPARG1|PPARG2|PPARgamma peroxisome proliferator-activated receptor gamma protein-coding 13-PTNLD9-TUMOR_peak_23977 chr19 11087686 11087903 + 7.34701 NA intron (NM_003072, intron 1 of 34) intron (NM_003072, intron 1 of 34) -7034 NM_001128847 6597 Hs.327527 NM_003072 HPRD:04459 SMARCA4 BAF190|BAF190A|BRG1|MRD16|RTPS2|SNF2|SNF2L4|SNF2LB|SWI2|hSNF2b SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 protein-coding 13-PTNLD9-TUMOR_peak_16348 chr14 78174329 78174480 + 7.34701 NA promoter-TSS (NM_031210) promoter-TSS (NM_031210) -10 NM_001267863 81892 Hs.655105 NM_031210 HPRD:12639 SLIRP C14orf156|DC50|PD04872 SRA stem-loop interacting RNA binding protein protein-coding 13-PTNLD9-TUMOR_peak_33198 chr22 36764762 36764896 + 7.34701 NA intron (NM_002473, intron 1 of 40) intron (NM_002473, intron 1 of 40) 19234 NM_002473 4627 Hs.474751 NM_002473 HPRD:01177 MYH9 BDPLT6|DFNA17|EPSTS|FTNS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA myosin, heavy chain 9, non-muscle protein-coding 13-PTNLD9-TUMOR_peak_21101 chr17 40811237 40811517 + 7.34701 NA 5' UTR (NM_016437, exon 1 of 11) 5' UTR (NM_016437, exon 1 of 11) 111 NM_016437 27175 Hs.708059 NM_016437 HPRD:05778 TUBG2 - tubulin, gamma 2 protein-coding 13-PTNLD9-TUMOR_peak_31960 chr21 16989674 16989780 + 7.34701 NA Intergenic AluJr4|SINE|Alu -112617 NM_013396 29761 Hs.743994 NM_013396 HPRD:05296 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 13-PTNLD9-TUMOR_peak_38509 chr4 61702470 61702618 + 7.34701 NA Intergenic L1PA3|LINE|L1 -660295 NM_015236 23284 Hs.28391 NM_015236 HPRD:10055 LPHN3 CIRL3|LEC3 latrophilin 3 protein-coding 13-PTNLD9-TUMOR_peak_41970 chr5 127607882 127608089 + 7.34701 NA intron (NM_001999, intron 61 of 64) MIR|SINE|MIR 188502 NR_046207 6558 Hs.162585 NM_001046 HPRD:06775 SLC12A2 BSC|BSC2|NKCC1|PPP1R141 solute carrier family 12 (sodium/potassium/chloride transporter), member 2 protein-coding 13-PTNLD9-TUMOR_peak_31366 chr20 48122204 48122306 + 7.34701 NA 3' UTR (NM_000961, exon 10 of 10) 3' UTR (NM_000961, exon 10 of 10) -23074 NM_004975 3745 Hs.84244 NM_004975 KCNB1 DRK1|KV2.1|h-DRK1 potassium voltage-gated channel, Shab-related subfamily, member 1 protein-coding 13-PTNLD9-TUMOR_peak_20959 chr17 37009956 37010166 + 7.34701 NA promoter-TSS (NM_000978) promoter-TSS (NM_000978) -8 NM_000978 9349 Hs.406300 NM_000978 RPL23 L23|rpL17 ribosomal protein L23 protein-coding 13-PTNLD9-TUMOR_peak_52211 chr8 135630467 135630707 + 7.34701 NA intron (NR_110323, intron 3 of 16) intron (NR_110323, intron 3 of 16) 20273 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_53962 chr9 93317763 93317966 + 7.34701 NA intron (NR_034157, intron 1 of 5) L1MC|LINE|L1 27164 NR_034157 340515 Hs.522284 NM_001105317 LINC01501 - long intergenic non-protein coding RNA 1501 ncRNA 13-PTNLD9-TUMOR_peak_40947 chr5 56731573 56731958 + 7.34701 NA Intergenic Intergenic 46871 NM_001017992 345651 Hs.482167 NM_001017992 HPRD:18598 ACTBL2 ACT actin, beta-like 2 protein-coding 13-PTNLD9-TUMOR_peak_26769 chr2 45347054 45347299 + 7.34701 NA Intergenic L2b|LINE|L2 -110634 NM_016932 10736 Hs.101937 NM_016932 HPRD:05408 SIX2 - SIX homeobox 2 protein-coding 13-PTNLD9-TUMOR_peak_17346 chr15 58417979 58418124 + 7.34701 NA Intergenic L1PA2|LINE|L1 -12357 NM_020980 366 Hs.104624 NM_020980 HPRD:04223 AQP9 AQP-9|HsT17287|SSC1 aquaporin 9 protein-coding 13-PTNLD9-TUMOR_peak_2262 chr1 80182365 80182497 + 7.34701 NA Intergenic Intergenic -709936 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ELTD1 ETL|KPG_003 EGF, latrophilin and seven transmembrane domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_14523 chr13 30717052 30717171 + 7.34701 NA Intergenic Intergenic 164080 NM_001014380 84056 Hs.243596 NM_032116 HPRD:13753 KATNAL1 - katanin p60 subunit A-like 1 protein-coding 13-PTNLD9-TUMOR_peak_17375 chr15 59846142 59846442 + 7.34701 NA Intergenic Intergenic -57690 NM_004751 9245 Hs.194710 NM_004751 HPRD:06018 GCNT3 C2/4GnT|C24GNT|C2GNT2|C2GNTM|GNTM glucosaminyl (N-acetyl) transferase 3, mucin type protein-coding 13-PTNLD9-TUMOR_peak_55855 chrX 49789573 49789678 + 7.34701 NA intron (NM_001127898, intron 3 of 14) L1HS|LINE|L1 10419 NR_030226 574504 NR_030226 MIR502 MIRN502|hsa-mir-502 microRNA 502 ncRNA 13-PTNLD9-TUMOR_peak_39885 chr4 175322210 175322508 + 7.34701 NA Intergenic LTR5_Hs|LTR|ERVK -22587 NR_036236 100423042 NR_036236 miRBase:MI0015882 MIR4276 - microRNA 4276 ncRNA 13-PTNLD9-TUMOR_peak_36758 chr3 172409237 172409423 + 7.34701 NA intron (NM_020792, intron 1 of 4) L2b|LINE|L2 19678 NM_001146278 57552 Hs.444099 NM_020792 HPRD:07489 NCEH1 AADACL1|NCEH neutral cholesterol ester hydrolase 1 protein-coding 13-PTNLD9-TUMOR_peak_765 chr1 26680658 26680810 + 7.34701 NA promoter-TSS (NM_001039775) promoter-TSS (NM_001039775) -113 NM_001039775 55057 Hs.128738 NM_017977 AIM1L CRYBG2 absent in melanoma 1-like protein-coding 13-PTNLD9-TUMOR_peak_34854 chr3 65156490 65156635 + 7.34701 NA Intergenic Intergenic 450879 NR_030317 693126 NR_030317 miRBase:MI0003598 MIR548A2 MIRN548A2 microRNA 548a-2 ncRNA 13-PTNLD9-TUMOR_peak_50168 chr8 17660354 17660617 + 7.34308 NA Intergenic Intergenic -2059 NM_001001925 57509 Hs.7946 NM_020749 HPRD:11376 MTUS1 ATBP|ATIP|ICIS|MP44|MTSG1 microtubule associated tumor suppressor 1 protein-coding 13-PTNLD9-TUMOR_peak_49274 chr7 137355322 137355530 + 7.33723 NA intron (NM_004717, intron 3 of 33) intron (NM_004717, intron 3 of 33) 176183 NM_004717 9162 Hs.242947 NM_004717 HPRD:07238 DGKI DGK-IOTA diacylglycerol kinase, iota protein-coding 13-PTNLD9-TUMOR_peak_48126 chr7 79081535 79081700 + 7.33723 NA promoter-TSS (NR_038346) promoter-TSS (NR_038346) -656 NR_038346 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 13-PTNLD9-TUMOR_peak_37262 chr3 192635719 192636106 + 7.33723 NA promoter-TSS (NM_178496) promoter-TSS (NM_178496) 38 NM_178496 151963 Hs.151443 NM_178496 HPRD:14092 MB21D2 C3orf59 Mab-21 domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_2310 chr1 85098966 85099089 + 7.33723 NA intron (NR_027379, intron 1 of 2) intron (NR_027379, intron 1 of 2) 1676 NR_027379 439927 Hs.407054 NM_001033660 HPRD:08182 C1orf180 - chromosome 1 open reading frame 180 ncRNA 13-PTNLD9-TUMOR_peak_8845 chr11 3302591 3302696 + 7.33723 NA Intergenic Intergenic -49027 NM_001039165 116534 Hs.745512 NM_001039165 ENSG00000184350 MRGPRE GPR167|MGRF|MRGE MAS-related GPR, member E protein-coding 13-PTNLD9-TUMOR_peak_51438 chr8 102138611 102139379 + 7.33723 NA Intergenic CpG 74713 NR_033962 441374 Hs.652045 NR_033962 ENSG00000248599 FLJ42969 - uncharacterized LOC441374 ncRNA 13-PTNLD9-TUMOR_peak_35779 chr3 127409844 127409954 + 7.33723 NA 3' UTR (NM_007283, exon 8 of 8) 3' UTR (NM_007283, exon 8 of 8) 18118 NR_033429 80325 Hs.107812 NM_032548 HPRD:10513 ABTB1 BPOZ|BTB3|BTBD21|EF1ABP ankyrin repeat and BTB (POZ) domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_49805 chr7 155546833 155547074 + 7.33723 NA intron (NM_053043, intron 14 of 17) intron (NM_053043, intron 14 of 17) 58014 NM_000193 6469 Hs.164537 NM_000193 SHH HHG1|HLP3|HPE3|MCOPCB5|SMMCI|TPT|TPTPS sonic hedgehog protein-coding 13-PTNLD9-TUMOR_peak_48310 chr7 92262734 92262967 + 7.33723 NA intron (NM_001259, intron 5 of 7) intron (NM_001259, intron 5 of 7) -43142 NR_109929 257415 Hs.18564 NM_152789 HPRD:17557 FAM133B - family with sequence similarity 133, member B protein-coding 13-PTNLD9-TUMOR_peak_36680 chr3 169951370 169951561 + 7.33723 NA intron (NM_002740, intron 1 of 17) intron (NM_002740, intron 1 of 17) 11245 NM_002740 5584 Hs.478199 NM_002740 HPRD:02105 PRKCI DXS1179E|PKCI|nPKC-iota protein kinase C, iota protein-coding 13-PTNLD9-TUMOR_peak_49778 chr7 154795494 154795687 + 7.33510 NA promoter-TSS (NM_007349) promoter-TSS (NM_007349) 447 NR_028090 202781 Hs.193172 NR_028090 ENSG00000273344 PAXIP1-AS1 - PAXIP1 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_2754 chr1 109796912 109797230 + 7.33502 NA intron (NM_001408, intron 1 of 33) intron (NM_001408, intron 1 of 33) 4430 NM_001408 1952 Hs.57652 NM_001408 HPRD:05040 CELSR2 CDHF10|EGFL2|Flamingo1|MEGF3 cadherin, EGF LAG seven-pass G-type receptor 2 protein-coding 13-PTNLD9-TUMOR_peak_42920 chr5 167838176 167838410 + 7.33478 NA intron (NM_015238, intron 8 of 22) intron (NM_015238, intron 8 of 22) -75170 NM_002887 5917 Hs.654907 NM_002887 HPRD:00142 RARS ArgRS|DALRD1 arginyl-tRNA synthetase protein-coding 13-PTNLD9-TUMOR_peak_1761 chr1 51810692 51810805 + 7.33478 NA promoter-TSS (NM_001144832) promoter-TSS (NM_001144832) 40 NM_001144832 22996 Hs.112949 NM_001080494 ENSG00000085831 TTC39A C1orf34|DEME-6 tetratricopeptide repeat domain 39A protein-coding 13-PTNLD9-TUMOR_peak_27926 chr2 106809252 106809353 + 7.33478 NA intron (NR_045607, intron 1 of 13) MIR|SINE|MIR 1493 NR_045607 80146 Hs.469561 NM_025076 HPRD:15642 UXS1 SDR6E1|UGD UDP-glucuronate decarboxylase 1 protein-coding 13-PTNLD9-TUMOR_peak_37566 chr4 1186278 1186390 + 7.33478 NA intron (NM_001199021, intron 1 of 7) intron (NM_001199021, intron 1 of 7) 16416 NM_001199021 10417 Hs.302963 NM_012445 HPRD:16174 SPON2 DIL-1|DIL1|M-SPONDIN|MINDIN spondin 2, extracellular matrix protein protein-coding 13-PTNLD9-TUMOR_peak_32563 chr21 46432697 46432829 + 7.33478 NA Intergenic Intergenic -8121 NR_024089 378825 Hs.534828 NR_024089 ENSG00000224930 LINC00162 C21orf113|NCRNA00162|NLC1-C|NLC1C|PRED74 long intergenic non-protein coding RNA 162 ncRNA 13-PTNLD9-TUMOR_peak_4966 chr1 201464573 201464749 + 7.33478 NA intron (NM_001193570, intron 2 of 5) intron (NM_001193570, intron 2 of 5) 1040 NM_001193572 1465 Hs.108080 NM_004078 HPRD:00470 CSRP1 CRP|CRP1|CSRP|CYRP|D1S181E|HEL-141 cysteine and glycine-rich protein 1 protein-coding 13-PTNLD9-TUMOR_peak_51958 chr8 127833948 127834073 + 7.33478 NA Intergenic Intergenic -191389 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_13798 chr12 110211634 110211802 + 7.33478 NA promoter-TSS (NR_026662) promoter-TSS (NR_026662) -426 NR_026662 84983 Hs.675961 NM_032897 ENSG00000255650 FAM222A-AS1 - FAM222A antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_5346 chr1 211688935 211689142 + 7.33478 NA Intergenic CpG -22779 NM_183059 343035 Hs.632495 NM_183059 HPRD:12726 RD3 C1orf36|LCA12 retinal degeneration 3 protein-coding 13-PTNLD9-TUMOR_peak_1490 chr1 44071559 44071761 + 7.33478 NA intron (NM_130440, intron 18 of 32) intron (NM_130440, intron 18 of 32) -44137 NM_014663 9682 Hs.155983 NM_014663 HPRD:17168 KDM4A JHDM3A|JMJD2|JMJD2A|TDRD14A lysine (K)-specific demethylase 4A protein-coding 13-PTNLD9-TUMOR_peak_10558 chr11 72433454 72433701 + 7.33478 NA promoter-TSS (NM_001135190) promoter-TSS (NM_001135190) -174 NM_001135190 116985 Hs.503165 NM_015242 HPRD:09440 ARAP1 CENTD2 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1 protein-coding 13-PTNLD9-TUMOR_peak_14232 chr12 125198101 125198312 + 7.33478 NA Intergenic L1MB4|LINE|L1 -146196 NM_001206654 9612 Hs.137510 NM_006312 HPRD:02910 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 13-PTNLD9-TUMOR_peak_24275 chr19 16453239 16453389 + 7.33478 NA Intergenic Intergenic 17663 NM_016270 10365 Hs.744182 NM_016270 HPRD:03602 KLF2 LKLF Kruppel-like factor 2 protein-coding 13-PTNLD9-TUMOR_peak_45657 chr6 86632861 86632985 + 7.33478 NA Intergenic LTR41|LTR|ERVL -244472 NR_003038 387066 Hs.292457 NR_003038 ENSG00000203875 SNHG5 C6orf160|LINC00044|NCRNA00044|U50HG|bA33E24.2 small nucleolar RNA host gene 5 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_49394 chr7 140397157 140397254 + 7.33343 NA promoter-TSS (NR_024454) promoter-TSS (NR_024454) -328 NR_024454 100134713 Hs.534141 NR_024454 ENSG00000240889 NDUFB2-AS1 - NDUFB2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_49809 chr7 156297816 156298025 + 7.33150 NA intron (NR_103858, intron 1 of 1) intron (NR_103858, intron 1 of 1) -35265 NR_024119 64433 Hs.404170 NR_024119 LINC00244 C7orf4|NCRNA00244 long intergenic non-protein coding RNA 244 ncRNA 13-PTNLD9-TUMOR_peak_43228 chr5 177473014 177473230 + 7.33150 NA intron (NR_038353, intron 8 of 11) intron (NR_038353, intron 8 of 11) 39155 NR_038353 653316 Hs.652193 NM_001079527 ENSG00000204677 FAM153C NY-REN-7-like family with sequence similarity 153, member C, pseudogene pseudo 13-PTNLD9-TUMOR_peak_35303 chr3 110246246 110246474 + 7.33150 NA Intergenic Intergenic 542446 NR_045114 100506555 Hs.535689 NR_045114 PVRL3-AS1 - PVRL3 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_50639 chr8 38089053 38089749 + 7.33150 NA promoter-TSS (NM_001164232) promoter-TSS (NM_001164232) -70 NM_001164232 23259 Hs.434966 NM_015214 HPRD:16788 DDHD2 SAMWD1|SPG54|iPLA(1)gamma DDHD domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_37663 chr4 3485311 3485523 + 7.32495 NA promoter-TSS (NM_001256896) promoter-TSS (NM_001256896) -854 NM_001256896 285489 Hs.122110 NM_173660 HPRD:08744 DOK7 C4orf25|CMS1B docking protein 7 protein-coding 13-PTNLD9-TUMOR_peak_48595 chr7 101085855 101085993 + 7.32369 NA intron (NM_133457, intron 2 of 12) MER4E1|LTR|ERV1 79823 NM_001278563 136227 Hs.654854 NM_133457 HPRD:16405 COL26A1 EMI6|EMID2|EMU2|SH2B collagen, type XXVI, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_44967 chr6 41149961 41150077 + 7.32369 NA Intergenic Intergenic 18906 NM_024807 79865 Hs.164797 NM_024807 HPRD:11646 TREML2 C6orf76|TLT-2|TLT2|dJ238O23.1 triggering receptor expressed on myeloid cells-like 2 protein-coding 13-PTNLD9-TUMOR_peak_42149 chr5 134475654 134475783 + 7.32369 NA intron (NM_001277348, intron 2 of 5) intron (NM_001277348, intron 2 of 5) -99981 NR_105050 101927953 Hs.436898 NR_105049 ENSG00000249082 C5orf66-AS1 CTC-276P9.1 C5orf66 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_10370 chr11 67442044 67442245 + 7.32369 NA promoter-TSS (NM_000695) promoter-TSS (NM_000695) -42 NM_000695 222 Hs.87539 NM_000695 HPRD:03559 ALDH3B2 ALDH8 aldehyde dehydrogenase 3 family, member B2 protein-coding 13-PTNLD9-TUMOR_peak_54050 chr9 97235238 97235370 + 7.32369 NA Intergenic L1MC5|LINE|L1 -82023 NR_121569 101928099 Hs.674409 NR_121566 PCAT7 PCAN-R2 prostate cancer associated transcript 7 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_19356 chr16 53779784 53779901 + 7.32369 NA intron (NM_001080432, intron 1 of 8) LTR86C|LTR|ERVL 41967 NM_001080432 79068 Hs.528833 NM_001080432 FTO ALKBH9 fat mass and obesity associated protein-coding 13-PTNLD9-TUMOR_peak_45270 chr6 51379309 51379501 + 7.32369 NA Intergenic Intergenic 573018 NM_170724 5314 Hs.662050 NM_138694 HPRD:05987 PKHD1 ARPKD|FCYT|TIGM1 polycystic kidney and hepatic disease 1 (autosomal recessive) protein-coding 13-PTNLD9-TUMOR_peak_9515 chr11 34642322 34642655 + 7.32369 NA promoter-TSS (NM_012153) promoter-TSS (NM_012153) -100 NM_012153 26298 Hs.653859 NM_012153 EHF ESE3|ESE3B|ESEJ ets homologous factor protein-coding 13-PTNLD9-TUMOR_peak_6038 chr1 238915694 238915924 + 7.32369 NA Intergenic Intergenic -266492 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 - long intergenic non-protein coding RNA 1139 ncRNA 13-PTNLD9-TUMOR_peak_21082 chr17 40440321 40440470 + 7.32369 NA 5' UTR (NM_003152, exon 2 of 20) 5' UTR (NM_003152, exon 2 of 20) 321 NM_001288720 6776 Hs.437058 NM_003152 HPRD:03301 STAT5A MGF|STAT5 signal transducer and activator of transcription 5A protein-coding 13-PTNLD9-TUMOR_peak_16648 chr14 104091295 104091461 + 7.32369 NA Intergenic Intergenic -4147 NM_001130107 3831 Hs.20107 NM_005552 HPRD:02489 KLC1 KLC|KNS2|KNS2A kinesin light chain 1 protein-coding 13-PTNLD9-TUMOR_peak_28949 chr2 164592759 164593022 + 7.32369 NA promoter-TSS (NM_018086) promoter-TSS (NM_018086) -377 NM_018086 55137 Hs.593650 NM_018086 FIGN - fidgetin protein-coding 13-PTNLD9-TUMOR_peak_54789 chr9 129567251 129567352 + 7.32369 NA promoter-TSS (NM_001135776) promoter-TSS (NM_001135776) 16 NM_001135776 23099 Hs.355581 NM_014007 HPRD:08346 ZBTB43 ZBTB22B|ZNF-X|ZNF297B zinc finger and BTB domain containing 43 protein-coding 13-PTNLD9-TUMOR_peak_1502 chr1 44333762 44333905 + 7.32369 NA intron (NR_073021, intron 6 of 9) L1ME4a|LINE|L1 29539 NR_106727 102464830 NR_106727 MIR6079 hsa-mir-6079 microRNA 6079 ncRNA 13-PTNLD9-TUMOR_peak_11292 chr11 114757653 114758002 + 7.32369 NA Intergenic Intergenic 208627 NM_182495 120406 Hs.446760 NM_182495 HPRD:08055 NXPE2 FAM55B neurexophilin and PC-esterase domain family, member 2 protein-coding 13-PTNLD9-TUMOR_peak_43736 chr6 10412511 10412621 + 7.31583 NA promoter-TSS (NR_033910) promoter-TSS (NR_033910) 15 NR_033910 100130275 Hs.661431 NR_033910 TFAP2A-AS1 - TFAP2A antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_24076 chr19 12889211 12889450 + 7.31430 NA Intergenic CpG -2896 NM_013312 29911 Hs.30792 NM_013312 HPRD:09698 HOOK2 HK2 hook microtubule-tethering protein 2 protein-coding 13-PTNLD9-TUMOR_peak_674 chr1 23882501 23882703 + 7.31430 NA Intergenic Intergenic 3683 NM_002167 3399 Hs.76884 NM_002167 HPRD:02608 ID3 HEIR-1|bHLHb25 inhibitor of DNA binding 3, dominant negative helix-loop-helix protein protein-coding 13-PTNLD9-TUMOR_peak_53354 chr9 45356313 45356495 + 7.31022 NA Intergenic CpG -351114 NR_121606 102723709 Hs.743015 NR_121606 LOC102723709 - uncharacterized LOC102723709 ncRNA 13-PTNLD9-TUMOR_peak_41395 chr5 78988516 78988672 + 7.30765 NA intron (NM_153610, intron 1 of 12) intron (NM_153610, intron 1 of 12) 2935 NM_153610 202333 Hs.482625 NM_153610 HPRD:16728 CMYA5 C5orf10|SPRYD2|TRIM76 cardiomyopathy associated 5 protein-coding 13-PTNLD9-TUMOR_peak_19771 chr16 75288539 75288698 + 7.30765 NA intron (NM_001170720, intron 1 of 7) intron (NM_001170720, intron 1 of 7) -3092 NM_001170717 9564 Hs.479747 NM_014567 HPRD:04248 BCAR1 CAS|CAS1|CASS1|CRKAS|P130Cas breast cancer anti-estrogen resistance 1 protein-coding 13-PTNLD9-TUMOR_peak_26950 chr2 54785469 54785774 + 7.30765 NA promoter-TSS (NM_178313) promoter-TSS (NM_178313) 90 NM_178313 6711 Hs.503178 NM_003128 HPRD:01683 SPTBN1 ELF|HEL102|SPTB2|betaSpII spectrin, beta, non-erythrocytic 1 protein-coding 13-PTNLD9-TUMOR_peak_23362 chr18 60104484 60104634 + 7.30580 NA Intergenic Intergenic -86099 NM_017742 54877 Hs.114191 NM_017742 HPRD:11696 ZCCHC2 C18orf49 zinc finger, CCHC domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_36353 chr3 149364090 149364210 + 7.30580 NA intron (NM_015472, intron 2 of 6) Charlie10|DNA|hAT-Charlie 11662 NM_001168280 25937 Hs.477921 NM_015472 HPRD:09580 WWTR1 TAZ WW domain containing transcription regulator 1 protein-coding 13-PTNLD9-TUMOR_peak_51149 chr8 74086675 74086836 + 7.30580 NA Intergenic Intergenic -81248 NM_153225 157869 Hs.439040 NM_153225 HPRD:15271 SBSPON C8orf84|RPESP somatomedin B and thrombospondin, type 1 domain containing protein-coding 13-PTNLD9-TUMOR_peak_47215 chr7 33812654 33812775 + 7.30580 NA Intergenic Intergenic -131809 NM_133468 168667 Hs.660998 NM_133468 HPRD:16368 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 13-PTNLD9-TUMOR_peak_43893 chr6 14661463 14661669 + 7.30580 NA Intergenic L2c|LINE|L2 -375881 NR_108096 102216342 Hs.563409 NR_108096 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 13-PTNLD9-TUMOR_peak_13543 chr12 97300974 97301300 + 7.30580 NA promoter-TSS (NM_001135175) promoter-TSS (NM_001135175) -107 NM_001135175 121441 Hs.270084 NM_152905 HPRD:02655 NEDD1 GCP-WD|TUBGCP7 neural precursor cell expressed, developmentally down-regulated 1 protein-coding 13-PTNLD9-TUMOR_peak_5471 chr1 222019294 222019495 + 7.30580 NA Intergenic Intergenic -103876 NM_007207 11221 Hs.497822 NM_007207 HPRD:12320 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 13-PTNLD9-TUMOR_peak_30063 chr2 235150785 235151002 + 7.30580 NA Intergenic Intergenic 191547 NM_006944 6694 Hs.444488 NM_006944 HPRD:04029 SPP2 SPP-24|SPP24 secreted phosphoprotein 2, 24kDa protein-coding 13-PTNLD9-TUMOR_peak_11486 chr11 123325024 123325293 + 7.30580 NA Intergenic Intergenic -71186 NM_020716 57476 Hs.144725 NM_020716 ENSG00000023171 GRAMD1B - GRAM domain containing 1B protein-coding 13-PTNLD9-TUMOR_peak_51657 chr8 117353131 117353263 + 7.30580 NA Intergenic Intergenic -15900 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 13-PTNLD9-TUMOR_peak_44803 chr6 36302950 36303169 + 7.30580 NA intron (NM_001010903, intron 1 of 11) intron (NM_001010903, intron 1 of 11) 1603 NM_001010903 389384 Hs.162104 NM_001010903 HPRD:16824 C6orf222 - chromosome 6 open reading frame 222 protein-coding 13-PTNLD9-TUMOR_peak_47209 chr7 33149246 33149384 + 7.30580 NA promoter-TSS (NM_203288) promoter-TSS (NM_203288) -313 NM_203288 6100 Hs.326805 NM_203288 HPRD:08457 RP9 PAP-1|PAP1 retinitis pigmentosa 9 (autosomal dominant) protein-coding 13-PTNLD9-TUMOR_peak_22741 chr18 20012681 20012817 + 7.30580 NA Intergenic Intergenic -14871 NM_172241 64693 Hs.406709 NM_022663 HPRD:16395 CTAGE1 CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2 cutaneous T-cell lymphoma-associated antigen 1 protein-coding 13-PTNLD9-TUMOR_peak_29905 chr2 223815685 223815901 + 7.30580 NA Intergenic Intergenic 90061 NM_203372 2181 Hs.655772 NM_004457 ACSL3 ACS3|FACL3|PRO2194 acyl-CoA synthetase long-chain family member 3 protein-coding 13-PTNLD9-TUMOR_peak_8802 chr11 1989953 1990132 + 7.30580 NA Intergenic Intergenic 21108 NR_024471 100133545 Hs.677620 NR_024471 ENSG00000226416 MRPL23-AS1 - MRPL23 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_12940 chr12 54891431 54891576 + 7.30580 NA promoter-TSS (NM_005337) promoter-TSS (NM_005337) 8 NM_005337 3071 Hs.182014 NM_005337 HPRD:00781 NCKAP1L HEM1 NCK-associated protein 1-like protein-coding 13-PTNLD9-TUMOR_peak_4978 chr1 201723664 201723758 + 7.30580 NA intron (NM_001167738, intron 1 of 26) L2|LINE|L2 14748 NM_001167738 89796 Hs.585374 NM_020443 HPRD:10113 NAV1 POMFIL3|STEERIN1|UNC53H1 neuron navigator 1 protein-coding 13-PTNLD9-TUMOR_peak_27911 chr2 105895666 105895784 + 7.30580 NA intron (NM_004257, intron 6 of 11) AluJo|SINE|Alu 37525 NM_007227 11250 Hs.590903 NM_007227 HPRD:05325 GPR45 PSP24|PSP24(ALPHA)|PSP24A G protein-coupled receptor 45 protein-coding 13-PTNLD9-TUMOR_peak_51448 chr8 102449404 102449541 + 7.30580 NA Intergenic Intergenic -55196 NM_024915 79977 Hs.661088 NM_024915 HPRD:10545 GRHL2 BOM|DFNA28|TFCP2L3 grainyhead-like 2 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_27495 chr2 87446769 87446863 + 7.30580 NA Intergenic Intergenic -143280 NR_026846 285074 Hs.424184 NM_001012626 HPRD:17345 LOC285074 - anaphase promoting complex subunit 1 pseudogene pseudo 13-PTNLD9-TUMOR_peak_20329 chr17 5015095 5015351 + 7.30580 NA 5' UTR (NM_014519, exon 2 of 5) 5' UTR (NM_014519, exon 2 of 5) 11174 NM_014519 7775 Hs.279914 NM_014519 HPRD:15755 ZNF232 ZSCAN11 zinc finger protein 232 protein-coding 13-PTNLD9-TUMOR_peak_11282 chr11 114229576 114229744 + 7.30580 NA Intergenic Intergenic 21101 NR_120567 101928940 Hs.409846 NR_120567 ENSG00000256195 LOC101928940 - uncharacterized LOC101928940 ncRNA 13-PTNLD9-TUMOR_peak_38134 chr4 26090262 26090414 + 7.30580 NA Intergenic Intergenic 174524 NM_001145432 389203 Hs.479386 NM_001145432 ENSG00000250317 SMIM20 C4orf52 small integral membrane protein 20 protein-coding 13-PTNLD9-TUMOR_peak_40419 chr5 16552943 16553058 + 7.30580 NA intron (NM_001034850, intron 3 of 8) intron (NM_001034850, intron 3 of 8) -43893 NM_019000 54463 Hs.481704 NM_019000 HPRD:07879 FAM134B JK-1|JK1 family with sequence similarity 134, member B protein-coding 13-PTNLD9-TUMOR_peak_14451 chr13 25861419 25861630 + 7.30580 NA 5' UTR (NM_004685, exon 1 of 14) 5' UTR (NM_004685, exon 1 of 14) 180 NM_004685 9107 Hs.643702 NM_004685 HPRD:11946 MTMR6 - myotubularin related protein 6 protein-coding 13-PTNLD9-TUMOR_peak_36389 chr3 150461396 150461587 + 7.30580 NA intron (NM_005067, intron 1 of 1) intron (NM_005067, intron 1 of 1) -4719 NR_121657 101928105 NR_121657 LOC101928105 - uncharacterized LOC101928105 ncRNA 13-PTNLD9-TUMOR_peak_21662 chr17 57910355 57910484 + 7.30576 NA intron (NM_030938, intron 10 of 11) intron (NM_030938, intron 10 of 11) -8208 NR_029493 406991 Hs.444569 NR_029493 miRBase:MI0000077 MIR21 MIRN21|hsa-mir-21|miR-21|miRNA21 microRNA 21 ncRNA 13-PTNLD9-TUMOR_peak_3569 chr1 150584048 150584383 + 7.30461 NA Intergenic Intergenic 17394 NM_207045 2029 Hs.632456 NM_004436 HPRD:11927 ENSA ARPP-19e endosulfine alpha protein-coding 13-PTNLD9-TUMOR_peak_54179 chr9 100904796 100905030 + 7.30461 NA intron (NM_052820, intron 2 of 11) intron (NM_052820, intron 2 of 11) -23278 NM_033219 9830 Hs.575631 NM_014788 HPRD:05948 TRIM14 - tripartite motif containing 14 protein-coding 13-PTNLD9-TUMOR_peak_21230 chr17 43546694 43546812 + 7.30461 NA intron (NR_027774, intron 3 of 10).2 intron (NR_027774, intron 3 of 10).2 6048 NR_036271 100422961 NR_036271 MIR4315-2 - microRNA 4315-2 ncRNA 13-PTNLD9-TUMOR_peak_33465 chr22 46817259 46817380 + 7.30239 NA intron (NM_014246, intron 5 of 34) intron (NM_014246, intron 5 of 34) 86021 NM_001282783 55687 Hs.439524 NM_018006 HPRD:15571 TRMU MTO2|MTU1|TRMT|TRMT1|TRNT1 tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase protein-coding 13-PTNLD9-TUMOR_peak_8990 chr11 8932601 8932741 + 7.30239 NA promoter-TSS (NM_020642) promoter-TSS (NM_020642) -30 NM_001206648 56672 Hs.131180 NM_020642 HPRD:12380 AKIP1 BCA3|C11orf17 A kinase (PRKA) interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_3483 chr1 149388220 149388329 + 7.30239 NA Intergenic Intergenic 18980 NR_027484 100132417 Hs.77424 NM_001128589 FCGR1C CD64c|FCRIC|IGFR1|IGFRC Fc fragment of IgG, high affinity Ic, receptor (CD64), pseudogene pseudo 13-PTNLD9-TUMOR_peak_22855 chr18 28682309 28682540 + 7.30239 NA promoter-TSS (NM_004949) promoter-TSS (NM_004949) -36 NM_004949 1824 Hs.95612 NM_004949 HPRD:00512 DSC2 ARVD11|CDHF2|DG2|DGII/III|DSC3 desmocollin 2 protein-coding 13-PTNLD9-TUMOR_peak_44489 chr6 30845568 30845787 + 7.30239 NA Intergenic Intergenic -4713 NM_001297652 780 Hs.631988 NM_001954 HPRD:02678 DDR1 CAK|CD167|DDR|EDDR1|HGK2|MCK10|NEP|NTRK4|PTK3|PTK3A|RTK6|TRKE discoidin domain receptor tyrosine kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_15589 chr14 38065139 38065243 + 7.30239 NA promoter-TSS (NM_004496) promoter-TSS (NM_004496) -866 NM_004496 3169 Hs.163484 NM_004496 HPRD:03801 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 13-PTNLD9-TUMOR_peak_37948 chr4 9512247 9512399 + 7.30239 NA Intergenic HERVE-int|LTR|ERV1 45614 NR_031688 100302277 NR_031688 miRBase:MI0006422 MIR548I2 MIR548I-2|MIRN548I2|hsa-mir-548i-2 microRNA 548i-2 ncRNA 13-PTNLD9-TUMOR_peak_21012 chr17 38497521 38497695 + 7.30239 NA promoter-TSS (NM_001024809) promoter-TSS (NM_001024809) -663 NM_001024809 5914 Hs.654583 NM_000964 RARA NR1B1|RAR retinoic acid receptor, alpha protein-coding 13-PTNLD9-TUMOR_peak_53889 chr9 90262052 90262233 + 7.30239 NA intron (NM_001288729, intron 13 of 25) intron (NM_001288729, intron 13 of 25) -78832 NM_001912 1514 Hs.731507 NM_001912 HPRD:00293 CTSL CATL|CTSL1|MEP cathepsin L protein-coding 13-PTNLD9-TUMOR_peak_12959 chr12 55878255 55878349 + 7.30239 NA Intergenic L1PA2|LINE|L1 -7860 NM_001005519 403284 Hs.626886 NM_001005519 HPRD:17776 OR6C68 - olfactory receptor, family 6, subfamily C, member 68 protein-coding 13-PTNLD9-TUMOR_peak_8189 chr10 103127789 103127957 + 7.30239 NA intron (NM_003939, intron 1 of 13) MSTB1|LTR|ERVL-MaLR 14083 NM_033637 8945 Hs.643802 NM_003939 HPRD:04596 BTRC BETA-TRCP|FBW1A|FBXW1|FBXW1A|FWD1|bTrCP|bTrCP1|betaTrCP beta-transducin repeat containing E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_40657 chr5 38635155 38635301 + 7.30239 NA intron (NR_103554, intron 2 of 8) MER21-int|LTR|ERVL -39721 NM_002310 3977 Hs.133421 NM_002310 HPRD:01048 LIFR CD118|LIF-R|SJS2|STWS|SWS leukemia inhibitory factor receptor alpha protein-coding 13-PTNLD9-TUMOR_peak_2523 chr1 94311522 94311663 + 7.30098 NA promoter-TSS (NR_030621) promoter-TSS (NR_030621) -796 NR_030621 100126348 NR_030621 miRBase:MI0005567 MIR760 MIRN760|hsa-mir-760 microRNA 760 ncRNA 13-PTNLD9-TUMOR_peak_8761 chr11 821330 821475 + 7.30098 NA intron (NM_020376, intron 2 of 9) intron (NM_020376, intron 2 of 9) 2501 NM_020376 57104 Hs.654697 NM_020376 HPRD:11443 PNPLA2 1110001C14Rik|ATGL|PEDF-R|TTS-2.2|TTS2|iPLA2zeta patatin-like phospholipase domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_54021 chr9 95853896 95854336 + 7.29584 NA Intergenic MLT1F|LTR|ERVL-MaLR -4334 NM_032310 84270 Hs.434213 NM_032310 HPRD:12985 C9orf89 BinCARD|bA370F5.1 chromosome 9 open reading frame 89 protein-coding 13-PTNLD9-TUMOR_peak_13878 chr12 112451978 112452131 + 7.29545 NA intron (NM_001034025, intron 1 of 1) MER1B|DNA|hAT-Charlie 902 NM_006817 10961 Hs.75841 NM_006817 HPRD:03794 ERP29 C12orf8|ERp28|ERp31|HEL-S-107|PDI-DB|PDIA9 endoplasmic reticulum protein 29 protein-coding 13-PTNLD9-TUMOR_peak_31715 chr20 57464211 57464353 + 7.29137 NA non-coding (NR_003259, exon 1 of 13) non-coding (NR_003259, exon 1 of 13) 102 NR_003259 2778 Hs.125898 NM_000516 HPRD:00761 GNAS AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PHP1A|PHP1B|PHP1C|POH GNAS complex locus protein-coding 13-PTNLD9-TUMOR_peak_6796 chr10 29876820 29877113 + 7.29137 NA intron (NM_003174, intron 3 of 35) intron (NM_003174, intron 3 of 35) 14309 NR_030634 100126327 NR_030634 miRBase:MI0005760 MIR938 MIRN938|hsa-mir-938 microRNA 938 ncRNA 13-PTNLD9-TUMOR_peak_10223 chr11 65261473 65261586 + 7.28879 NA Intergenic Intergenic -3704 NR_002819 378938 Hs.621695 NR_002819 ENSG00000251562 MALAT1 HCN|LINC00047|MALAT-1|NCRNA00047|NEAT2|PRO2853|mascRNA metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_39132 chr4 115484809 115484905 + 7.28740 NA Intergenic LTR50|LTR|ERVL -34754 NM_001128174 7368 Hs.144197 NM_003360 HPRD:03186 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 13-PTNLD9-TUMOR_peak_27712 chr2 96782386 96782516 + 7.28740 NA promoter-TSS (NM_000682) promoter-TSS (NM_000682) -467 NM_000682 151 Hs.247686 NM_000682 HPRD:00086 ADRA2B ADRA2L1|ADRA2RL1|ADRARL1|ALPHA2BAR|alpha-2BAR adrenoceptor alpha 2B protein-coding 13-PTNLD9-TUMOR_peak_639 chr1 22366284 22366509 + 7.28740 NA Intergenic Intergenic -12724 NM_001791 998 Hs.467637 NM_001791 HPRD:00309 CDC42 CDC42Hs|G25K cell division cycle 42 protein-coding 13-PTNLD9-TUMOR_peak_4800 chr1 187213910 187214004 + 7.28740 NA Intergenic Intergenic 415925 NM_024420 5321 Hs.497200 NM_024420 HPRD:08986 PLA2G4A PLA2G4|cPLA2-alpha phospholipase A2, group IVA (cytosolic, calcium-dependent) protein-coding 13-PTNLD9-TUMOR_peak_41100 chr5 66722956 66723249 + 7.28740 NA Intergenic L2a|LINE|L2 -230485 NM_005582 4064 Hs.87205 NM_005582 HPRD:03749 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 13-PTNLD9-TUMOR_peak_48160 chr7 81107972 81108255 + 7.28740 NA Intergenic L1P2|LINE|L1 291339 NM_001010933 3082 Hs.396530 NM_000601 HPRD:00799 HGF DFNB39|F-TCF|HGFB|HPTA|SF hepatocyte growth factor (hepapoietin A; scatter factor) protein-coding 13-PTNLD9-TUMOR_peak_20834 chr17 30454503 30454691 + 7.28740 NA Intergenic Intergenic -14876 NM_001033568 55288 Hs.655325 NM_018307 HPRD:15247 RHOT1 ARHT1|MIRO-1|MIRO1 ras homolog family member T1 protein-coding 13-PTNLD9-TUMOR_peak_27699 chr2 96299543 96299645 + 7.28740 NA Intergenic Intergenic 41828 NM_138800 129868 Hs.232026 NM_138800 HPRD:15560 TRIM43 TRIM43A tripartite motif containing 43 protein-coding 13-PTNLD9-TUMOR_peak_52059 chr8 130898992 130899423 + 7.28740 NA intron (NR_046359, intron 4 of 14) L2a|LINE|L2 52911 NM_001256763 51571 Hs.126941 NM_016623 HPRD:13313 FAM49B L1 family with sequence similarity 49, member B protein-coding 13-PTNLD9-TUMOR_peak_34777 chr3 58457057 58457313 + 7.28740 NA Intergenic Intergenic -20638 NM_001128214 200845 Hs.13982 NM_153331 HPRD:13769 KCTD6 KCASH3 potassium channel tetramerization domain containing 6 protein-coding 13-PTNLD9-TUMOR_peak_14033 chr12 120695026 120695270 + 7.28740 NA intron (NM_001243756, intron 1 of 10) intron (NM_001243756, intron 1 of 10) -7184 NM_025157 5829 Hs.446336 NM_002859 ENSG00000089159 PXN - paxillin protein-coding 13-PTNLD9-TUMOR_peak_37465 chr3 197044212 197044411 + 7.28740 NA Intergenic Intergenic -18168 NM_001290983 1739 Hs.292549 NM_004087 HPRD:03007 DLG1 DLGH1|SAP-97|SAP97|dJ1061C18.1.1|hdlg discs, large homolog 1 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_9276 chr11 19547326 19547469 + 7.28740 NA intron (NM_001111018, intron 1 of 37) intron (NM_001111018, intron 1 of 37) -1772 NR_033989 399876 Hs.132600 NR_033989 ENSG00000254622 NAV2-AS4 - NAV2 antisense RNA 4 ncRNA 13-PTNLD9-TUMOR_peak_51027 chr8 61460688 61460855 + 7.28740 NA intron (NM_001242644, intron 1 of 6) SVA_F|Other|Other 31302 NM_001242644 5862 Hs.369017 NM_002865 HPRD:01539 RAB2A LHX|RAB2 RAB2A, member RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_18986 chr16 30258045 30258167 + 7.28148 NA Intergenic Intergenic -1174 NR_002555 613037 Hs.585733 NR_002555 ENSG00000198064 LOC613037 - nuclear pore complex interacting protein pseudogene pseudo 13-PTNLD9-TUMOR_peak_31668 chr20 55970815 55970943 + 7.27915 NA intron (NM_001291780, intron 4 of 4) intron (NM_001291780, intron 4 of 4) 4425 NM_001291780 55544 Hs.236361 NM_017495 HPRD:15268 RBM38 HSRNASEB|RNPC1|SEB4B|SEB4D|dJ800J21.2 RNA binding motif protein 38 protein-coding 13-PTNLD9-TUMOR_peak_36661 chr3 169386870 169387146 + 7.27856 NA Intergenic CpG -5445 NM_004991 2122 Hs.744090 NM_004991 HPRD:01310 MECOM AML1-EVI-1|EVI1|MDS1|MDS1-EVI1|PRDM3 MDS1 and EVI1 complex locus protein-coding 13-PTNLD9-TUMOR_peak_29070 chr2 172378816 172379020 + 7.27856 NA promoter-TSS (NM_024843) promoter-TSS (NM_024843) 52 NM_001127383 79901 Hs.221941 NM_024843 HPRD:05764 CYBRD1 CYB561A2|DCYTB|FRRS3 cytochrome b reductase 1 protein-coding 13-PTNLD9-TUMOR_peak_890 chr1 29507872 29508041 + 7.27856 NA intron (NM_005626, intron 1 of 5) intron (NM_005626, intron 1 of 5) 681 NM_005626 6429 Hs.469970 NM_005626 HPRD:09052 SRSF4 SFRS4|SRP75 serine/arginine-rich splicing factor 4 protein-coding 13-PTNLD9-TUMOR_peak_49022 chr7 129108016 129108159 + 7.27856 NA intron (NM_020704, intron 17 of 20) intron (NM_020704, intron 17 of 20) 33813 NM_020704 57464 Hs.489988 NM_020704 HPRD:16880 STRIP2 FAM40B|FAR11B striatin interacting protein 2 protein-coding 13-PTNLD9-TUMOR_peak_55040 chr9 139588330 139588527 + 7.27856 NA Intergenic Intergenic -6517 NM_006412 10555 Hs.320151 NM_006412 HPRD:04373 AGPAT2 1-AGPAT2|BSCL|BSCL1|LPAAB|LPAAT-beta 1-acylglycerol-3-phosphate O-acyltransferase 2 protein-coding 13-PTNLD9-TUMOR_peak_9905 chr11 57568117 57568318 + 7.27775 NA intron (NM_001085468, intron 4 of 16) intron (NM_001085468, intron 4 of 16) 38983 NM_001085467 1500 Hs.166011 NM_001331 HPRD:03026 CTNND1 CAS|CTNND|P120CAS|P120CTN|p120|p120(CAS)|p120(CTN) catenin (cadherin-associated protein), delta 1 protein-coding 13-PTNLD9-TUMOR_peak_44154 chr6 24932648 24932844 + 7.27775 NA intron (NM_001286446, intron 1 of 13) intron (NM_001286446, intron 1 of 13) 3534 NM_001286445 9750 Hs.559459 NM_014722 HPRD:12881 FAM65B C6orf32|DIFF40|DIFF48|MYONAP|PL48 family with sequence similarity 65, member B protein-coding 13-PTNLD9-TUMOR_peak_32924 chr22 23860979 23861140 + 7.27775 NA Intergenic MIR|SINE|MIR -31892 NR_110539 388882 Hs.542766 NR_110539 HPRD:14207 LOC388882 - uncharacterized LOC388882 ncRNA 13-PTNLD9-TUMOR_peak_18260 chr16 2564715 2564866 + 7.27775 NA intron (NM_001694, intron 1 of 2) CpG 919 NM_001694 527 Hs.389107 NM_001694 HPRD:00162 ATP6V0C ATP6C|ATP6L|ATPL|VATL|VPPC|Vma3 ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c protein-coding 13-PTNLD9-TUMOR_peak_44845 chr6 37023869 37024029 + 7.27715 NA Intergenic Intergenic 50526 NM_173558 221472 Hs.509664 NM_173558 HPRD:05478 FGD2 ZFYVE4 FYVE, RhoGEF and PH domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_45867 chr6 109292480 109292674 + 7.26960 NA intron (NM_032131, intron 17 of 17) intron (NM_032131, intron 17 of 17) 37614 NM_001199934 27244 Hs.591336 NM_014454 HPRD:07310 SESN1 PA26|SEST1 sestrin 1 protein-coding 13-PTNLD9-TUMOR_peak_23522 chr18 77139112 77139207 + 7.26960 NA TTS (NM_198531) TTS (NM_198531) -16613 NM_001278669 4772 Hs.534074 NM_006162 HPRD:02729 NFATC1 NF-ATC|NFAT2|NFATc nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1 protein-coding 13-PTNLD9-TUMOR_peak_5124 chr1 204071968 204072210 + 7.26960 NA intron (NM_005686, intron 1 of 13) intron (NM_005686, intron 1 of 13) 29843 NM_005686 9580 Hs.201671 NM_005686 ENSG00000143842 SOX13 ICA12|Sox-13 SRY (sex determining region Y)-box 13 protein-coding 13-PTNLD9-TUMOR_peak_11330 chr11 117008074 117008206 + 7.26960 NA Intergenic Intergenic -6860 NR_110268 5049 Hs.728488 NM_002572 HPRD:03940 PAFAH1B2 HEL-S-303 platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa) protein-coding 13-PTNLD9-TUMOR_peak_17624 chr15 73928863 73929035 + 7.26960 NA Intergenic Intergenic -3196 NM_017455 27020 Hs.744867 NM_012428 HPRD:18033 NPTN GP55|GP65|SDFR1|SDR1|np55|np65 neuroplastin protein-coding 13-PTNLD9-TUMOR_peak_22302 chr17 79949638 79949735 + 7.26960 NA intron (NR_045351, intron 3 of 14) intron (NR_045351, intron 3 of 14) 14260 NM_001251888 79058 Hs.298351 NM_024083 HPRD:06947 ASPSCR1 ASPCR1|ASPL|ASPS|RCC17|TUG|UBXD9|UBXN9 alveolar soft part sarcoma chromosome region, candidate 1 protein-coding 13-PTNLD9-TUMOR_peak_32409 chr21 43352835 43352931 + 7.26960 NA intron (NM_015500, intron 2 of 13) intron (NM_015500, intron 2 of 13) -6084 NM_199050 25966 Hs.473894 NM_015500 HPRD:10745 C2CD2 C21orf25|C21orf258|TMEM24L C2 calcium-dependent domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_40900 chr5 55408568 55408931 + 7.26960 NA intron (NM_024669, intron 9 of 11) intron (NM_024669, intron 9 of 11) 117754 NR_102755 441072 Hs.482141 NR_102755 ENSG00000227908 FLJ31104 - uncharacterized LOC441072 ncRNA 13-PTNLD9-TUMOR_peak_36698 chr3 170469501 170469629 + 7.26960 NA Intergenic Intergenic 118480 NM_001099645 200916 Hs.380933 NM_001099645 ENSG00000163584 RPL22L1 - ribosomal protein L22-like 1 protein-coding 13-PTNLD9-TUMOR_peak_24887 chr19 38812468 38812803 + 7.26960 NA intron (NM_004823, intron 1 of 2) MIR|SINE|MIR 2151 NM_004823 9424 Hs.240395 NM_004823 HPRD:06803 KCNK6 K2p6.1|KCNK8|TOSS|TWIK-2|TWIK2 potassium channel, subfamily K, member 6 protein-coding 13-PTNLD9-TUMOR_peak_21251 chr17 44331341 44331440 + 7.26960 NA Intergenic L1M7|LINE|L1 10460 NR_026901 644172 Hs.448859 NR_026901 LOC644172 - mitogen-activated protein kinase 8 interacting protein 1 pseudogene pseudo 13-PTNLD9-TUMOR_peak_28305 chr2 122042805 122042941 + 7.26960 NA promoter-TSS (NM_014553) promoter-TSS (NM_014553) -95 NM_014553 29842 Hs.156471 NM_014553 HPRD:18175 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2-like 1 protein-coding 13-PTNLD9-TUMOR_peak_19974 chr16 85364542 85364636 + 7.26960 NA Intergenic Intergenic -24658 NR_049816 100847022 NR_049816 miRBase:MI0017982 MIR5093 - microRNA 5093 ncRNA 13-PTNLD9-TUMOR_peak_31180 chr20 43972975 43973112 + 7.26880 NA intron (NM_002999, intron 1 of 4) intron (NM_002999, intron 1 of 4) 4021 NM_002999 6385 Hs.632267 NM_002999 HPRD:08366 SDC4 SYND4 syndecan 4 protein-coding 13-PTNLD9-TUMOR_peak_17804 chr15 82810343 82810540 + 7.26674 NA intron (NR_111962, intron 7 of 10) intron (NR_111962, intron 7 of 10) 5672 NM_001291420 440295 Hs.498322 NM_198181 HPRD:11262 GOLGA6L9 GOLGA6L20 golgin A6 family-like 9 protein-coding 13-PTNLD9-TUMOR_peak_36973 chr3 184032625 184033017 + 7.26674 NA promoter-TSS (NM_182917) promoter-TSS (NM_182917) -131 NM_182917 1981 Hs.433750 NM_004953 HPRD:06774 EIF4G1 EIF-4G1|EIF4F|EIF4G|EIF4GI|P220|PARK18 eukaryotic translation initiation factor 4 gamma, 1 protein-coding 13-PTNLD9-TUMOR_peak_43934 chr6 16215901 16216077 + 7.26504 NA Intergenic Intergenic -22822 NM_006877 2766 Hs.484741 NM_006877 HPRD:00754 GMPR GMPR1 guanosine monophosphate reductase protein-coding 13-PTNLD9-TUMOR_peak_47227 chr7 34908947 34909044 + 7.26504 NA intron (NM_001300933, intron 8 of 8) intron (NM_001300933, intron 8 of 8) -35052 NR_015356 404744 Hs.487951 NM_207283 HPRD:12265 NPSR1-AS1 AAA1 NPSR1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_3701 chr1 153095695 153095860 + 7.26504 NA Intergenic L1PBa|LINE|L1 -9788 NM_001014450 6705 Hs.490252 NM_001014450 HPRD:18699 SPRR2F - small proline-rich protein 2F protein-coding 13-PTNLD9-TUMOR_peak_16021 chr14 65112035 65112211 + 7.26504 NA Intergenic Intergenic -59070 NM_015549 26030 Hs.509637 NM_015549 HPRD:17861 PLEKHG3 ARHGEF43|KIAA0599 pleckstrin homology domain containing, family G (with RhoGef domain) member 3 protein-coding 13-PTNLD9-TUMOR_peak_11610 chr11 128811930 128812071 + 7.26504 NA intron (NM_022112, intron 1 of 3) intron (NM_022112, intron 1 of 3) 1294 NM_001251964 63970 Hs.160953 NM_022112 HPRD:10397 TP53AIP1 P53AIP1 tumor protein p53 regulated apoptosis inducing protein 1 protein-coding 13-PTNLD9-TUMOR_peak_15041 chr13 103046467 103046992 + 7.26504 NA promoter-TSS (NR_036487) promoter-TSS (NR_036487) 140 NR_036486 283480 Hs.662212 NR_036486 FGF14-IT1 - FGF14 intronic transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_14784 chr13 52200976 52201083 + 7.26504 NA intron (NM_052950, intron 1 of 11) MER52A|LTR|ERV1 42545 NM_052950 115825 Hs.46506 NM_052950 HPRD:18294 WDFY2 PROF|WDF2|ZFYVE22 WD repeat and FYVE domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_35356 chr3 111757760 111757985 + 7.26504 NA promoter-TSS (NM_001042575) promoter-TSS (NM_001042575) -593 NM_001042575 344805 Hs.435490 NM_001042575 ENSG00000176040 TMPRSS7 - transmembrane protease, serine 7 protein-coding 13-PTNLD9-TUMOR_peak_16294 chr14 75894606 75894702 + 7.26504 NA promoter-TSS (NM_001135048) promoter-TSS (NM_001135048) 145 NM_001135047 122953 Hs.196482 NM_130469 HPRD:16360 JDP2 JUNDM2 Jun dimerization protein 2 protein-coding 13-PTNLD9-TUMOR_peak_1862 chr1 55067464 55067630 + 7.26504 NA intron (NM_015547, intron 9 of 16) intron (NM_015547, intron 9 of 16) 21653 NM_176782 338094 Hs.234786 NM_176782 HPRD:11326 FAM151A C1orf179 family with sequence similarity 151, member A protein-coding 13-PTNLD9-TUMOR_peak_21736 chr17 61753357 61753538 + 7.26504 NA intron (NM_203351, intron 7 of 16) intron (NM_203351, intron 7 of 16) 24072 NM_030576 80774 Hs.591166 NM_030576 HPRD:14407 LIMD2 - LIM domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_13900 chr12 113530958 113531159 + 7.26504 NA intron (NM_004416, intron 3 of 8) CpG-5793 35396 NM_004416 1840 Hs.372152 NM_004416 HPRD:03991 DTX1 hDx-1 deltex 1, E3 ubiquitin ligase protein-coding 13-PTNLD9-TUMOR_peak_6432 chr10 7729307 7729493 + 7.26504 NA Intergenic Intergenic -15836 NM_002216 3698 Hs.75285 NM_002216 HPRD:00890 ITIH2 H2P|SHAP inter-alpha-trypsin inhibitor heavy chain 2 protein-coding 13-PTNLD9-TUMOR_peak_15949 chr14 61645454 61645605 + 7.26504 NA Intergenic Intergenic 103001 NM_001017970 161291 Hs.146180 NM_001017970 HPRD:18567 TMEM30B CDC50B transmembrane protein 30B protein-coding 13-PTNLD9-TUMOR_peak_51686 chr8 118566618 118566807 + 7.26504 NA Intergenic MER63A|DNA|hAT-Blackjack 33760 NM_080651 90390 Hs.492612 NM_080651 HPRD:11631 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 13-PTNLD9-TUMOR_peak_22571 chr18 10010734 10010983 + 7.26504 NA Intergenic Intergenic 96903 NM_003574 9218 Hs.165195 NM_003574 HPRD:09299 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP (vesicle-associated membrane protein)-associated protein A, 33kDa protein-coding 13-PTNLD9-TUMOR_peak_23892 chr19 9517694 9517923 + 7.26504 NA Intergenic CpG 28446 NM_006631 10781 Hs.656185 NM_006631 HPRD:06882 ZNF266 HZF1 zinc finger protein 266 protein-coding 13-PTNLD9-TUMOR_peak_54475 chr9 115646538 115646641 + 7.26504 NA intron (NM_033051, intron 3 of 3) intron (NM_033051, intron 3 of 3) 6604 NM_033051 57864 Hs.512668 NM_033051 HPRD:16411 SLC46A2 Ly110|TSCOT solute carrier family 46, member 2 protein-coding 13-PTNLD9-TUMOR_peak_23099 chr18 45576630 45576784 + 7.26504 NA intron (NM_001039360, intron 1 of 2) intron (NM_001039360, intron 1 of 2) 86973 NM_001039360 201501 Hs.515388 NM_001039360 ENSG00000184828 ZBTB7C APM-1|APM1|ZBTB36|ZNF857C zinc finger and BTB domain containing 7C protein-coding 13-PTNLD9-TUMOR_peak_30265 chr20 1470813 1470968 + 7.26504 NA intron (NM_001122962, intron 1 of 4) MIRb|SINE|MIR 1343 NM_001134836 284759 Hs.721685 NM_001122962 ENSG00000196209 SIRPB2 PTPN1L|PTPNS1L3|dJ776F14.2 signal-regulatory protein beta 2 protein-coding 13-PTNLD9-TUMOR_peak_24162 chr19 14136551 14136673 + 7.26504 NA Intergenic AluSc|SINE|Alu -2405 NM_080864 117579 Hs.352155 NM_080864 RLN3 H3|RXN3|ZINS4|insl7 relaxin 3 protein-coding 13-PTNLD9-TUMOR_peak_9253 chr11 18973743 18974046 + 7.26504 NA Intergenic Intergenic -17345 NM_147199 259249 Hs.711459 NM_147199 HPRD:06246 MRGPRX1 GPCR|MGRG2|MRGX1|SNSR4 MAS-related GPR, member X1 protein-coding 13-PTNLD9-TUMOR_peak_48755 chr7 106239272 106239413 + 7.26504 NA Intergenic Intergenic 62292 NM_175884 168455 Hs.29692 NM_175884 HPRD:08202 CCDC71L C7orf74 coiled-coil domain containing 71-like protein-coding 13-PTNLD9-TUMOR_peak_56203 chrX 81046707 81046884 + 7.26504 NA Intergenic L1PBa|LINE|L1 -589354 NM_030763 79366 Hs.282204 NM_030763 HPRD:02310 HMGN5 NBP-45|NSBP1 high mobility group nucleosome binding domain 5 protein-coding 13-PTNLD9-TUMOR_peak_43415 chr6 1325906 1326075 + 7.26504 NA Intergenic Intergenic 13315 NM_033260 94234 Hs.591352 NM_033260 HPRD:17015 FOXQ1 HFH1 forkhead box Q1 protein-coding 13-PTNLD9-TUMOR_peak_16991 chr15 33602978 33603199 + 7.26504 NA promoter-TSS (NM_001036) promoter-TSS (NM_001036) -89 NM_001036 6263 Hs.709373 NM_001036 HPRD:01620 RYR3 RYR-3 ryanodine receptor 3 protein-coding 13-PTNLD9-TUMOR_peak_5724 chr1 228718667 228719065 + 7.26473 NA Intergenic HSAT4|Satellite|centr -18877 NM_001287262 100129094 Hs.730208 NM_001287262 BTNL10 BTN4|BUTR1 butyrophilin-like 10 protein-coding 13-PTNLD9-TUMOR_peak_5268 chr1 206567011 206567395 + 7.25836 NA intron (NM_001170637, intron 4 of 19) MIRb|SINE|MIR 9836 NR_120535 100996712 Hs.497575 NM_001271887 SRGAP2D - SLIT-ROBO Rho GTPase activating protein 2D (pseudogene) pseudo 13-PTNLD9-TUMOR_peak_37813 chr4 7072609 7072708 + 7.25820 NA Intergenic Intergenic -2858 NM_025196 80273 Hs.443723 NM_025196 GRPEL1 HMGE GrpE-like 1, mitochondrial (E. coli) protein-coding 13-PTNLD9-TUMOR_peak_26184 chr2 15815501 15815855 + 7.25555 NA Intergenic Intergenic -15228 NR_110201 101926966 Hs.502835 NR_110201 ENSG00000231031 LOC101926966 - uncharacterized LOC101926966 ncRNA 13-PTNLD9-TUMOR_peak_39452 chr4 141072603 141072715 + 7.25555 NA intron (NM_018717, intron 1 of 5) CpG 2574 NM_018717 55534 Hs.586165 NM_018717 HPRD:10066 MAML3 CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3 mastermind-like 3 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_52363 chr8 142426400 142426896 + 7.25555 NA Intergenic Intergenic -4840 NM_007079 11156 Hs.43666 NM_007079 PTP4A3 PRL-3|PRL-R|PRL3 protein tyrosine phosphatase type IVA, member 3 protein-coding 13-PTNLD9-TUMOR_peak_41691 chr5 107991911 107992011 + 7.25111 NA Intergenic Intergenic 72001 NR_046368 100652853 Hs.133009 NR_046368 ENSG00000272523 LINC01023 HP07349 long intergenic non-protein coding RNA 1023 ncRNA 13-PTNLD9-TUMOR_peak_2881 chr1 113088760 113088854 + 7.25111 NA intron (NM_138728, intron 12 of 13) AluJb|SINE|Alu 37437 NM_024494 7482 Hs.258575 NM_004185 WNT2B WNT13 wingless-type MMTV integration site family, member 2B protein-coding 13-PTNLD9-TUMOR_peak_17717 chr15 77835796 77835901 + 7.25111 NA Intergenic Intergenic 89021 NM_032808 84894 Hs.656765 NM_032808 HPRD:14322 LINGO1 LERN1|LRRN6A|UNQ201 leucine rich repeat and Ig domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_71 chr1 1208078 1208275 + 7.25111 NA intron (NM_194458, intron 1 of 6) intron (NM_194458, intron 1 of 6) 1058 NM_058167 118424 Hs.191987 NM_058167 HPRD:15600 UBE2J2 NCUBE-2|NCUBE2|PRO2121 ubiquitin-conjugating enzyme E2, J2 protein-coding 13-PTNLD9-TUMOR_peak_14446 chr13 25245550 25245850 + 7.25111 NA Intergenic Intergenic -8849 NM_001676 479 Hs.147111 NM_001676 HPRD:01667 ATP12A ATP1AL1 ATPase, H+/K+ transporting, nongastric, alpha polypeptide protein-coding 13-PTNLD9-TUMOR_peak_9058 chr11 11265462 11265595 + 7.25111 NA Intergenic Intergenic 109376 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2, alpha 3 polypeptide protein-coding 13-PTNLD9-TUMOR_peak_5297 chr1 207041211 207041358 + 7.25111 NA intron (NM_018724, intron 4 of 4) L2c|LINE|L2 2130 NM_018724 50604 Hs.272373 NM_018724 IL20 IL-20|IL10D|ZCYTO10 interleukin 20 protein-coding 13-PTNLD9-TUMOR_peak_20375 chr17 7123102 7123244 + 7.25111 NA promoter-TSS (NM_000018) promoter-TSS (NM_000018) 23 NM_001270448 37 Hs.437178 NM_000018 HPRD:01940 ACADVL ACAD6|LCACD|VLCAD acyl-CoA dehydrogenase, very long chain protein-coding 13-PTNLD9-TUMOR_peak_34013 chr3 18699745 18700151 + 7.25111 NA Intergenic Intergenic 213219 NR_125803 101927777 Hs.543235 NR_125803 SATB1-AS1 - SATB1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_40282 chr5 9924854 9924956 + 7.25111 NA Intergenic MLT1H2|LTR|ERVL-MaLR -20969 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LOC285692 - uncharacterized LOC285692 ncRNA 13-PTNLD9-TUMOR_peak_1545 chr1 45097514 45097869 + 7.25111 NA intron (NM_018150, intron 5 of 14) CpG 42589 NM_024587 79639 Hs.22157 NM_024587 HPRD:07989 TMEM53 NET4 transmembrane protein 53 protein-coding 13-PTNLD9-TUMOR_peak_30215 chr2 242714938 242715148 + 7.25111 NA Intergenic Intergenic -1197 NM_022134 64090 Hs.632556 NM_022134 HPRD:16303 GAL3ST2 GAL3ST-2|GP3ST galactose-3-O-sulfotransferase 2 protein-coding 13-PTNLD9-TUMOR_peak_33000 chr22 25871550 25871903 + 7.25111 NA Intergenic Intergenic 20113 NR_106875 102466198 NR_106875 MIR6817 hsa-mir-6817 microRNA 6817 ncRNA 13-PTNLD9-TUMOR_peak_27796 chr2 99422068 99422183 + 7.25111 NA intron (NM_207362, intron 7 of 9) intron (NM_207362, intron 7 of 9) -74536 NM_012214 11320 Hs.177576 NM_012214 HPRD:06860 MGAT4A GNT-IV|GNT-IVA|GnT-4a mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A protein-coding 13-PTNLD9-TUMOR_peak_22130 chr17 75832790 75833048 + 7.25111 NA Intergenic L1MB8|LINE|L1 47250 NR_028337 400624 Hs.514521 NM_001001685 FLJ45079 - FLJ45079 protein ncRNA 13-PTNLD9-TUMOR_peak_5844 chr1 232766492 232766649 + 7.25111 NA Intergenic Intergenic 111891 NR_110683 101927683 Hs.520568 NR_110683 ENSG00000236497 LOC101927683 - uncharacterized LOC101927683 ncRNA 13-PTNLD9-TUMOR_peak_52042 chr8 129984923 129985096 + 7.25111 NA Intergenic L2c|LINE|L2 268477 NR_033916 728724 Hs.49902 NR_033916 ENSG00000250400 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 13-PTNLD9-TUMOR_peak_29348 chr2 191208239 191208357 + 7.25111 NA 5' UTR (NM_002194, exon 1 of 6) 5' UTR (NM_002194, exon 1 of 6) 102 NM_002194 3628 Hs.32309 NM_002194 HPRD:00923 INPP1 - inositol polyphosphate-1-phosphatase protein-coding 13-PTNLD9-TUMOR_peak_15069 chr13 107185473 107185609 + 7.25111 NA intron (NM_004093, intron 1 of 4) intron (NM_004093, intron 1 of 4) 1847 NM_004093 1948 Hs.149239 NM_004093 HPRD:02754 EFNB2 EPLG5|HTKL|Htk-L|LERK5 ephrin-B2 protein-coding 13-PTNLD9-TUMOR_peak_54741 chr9 126208342 126208488 + 7.25111 NA intron (NM_020946, intron 18 of 21) intron (NM_020946, intron 18 of 21) 39486 NR_106972 102465688 NR_106972 MIR7150 hsa-mir-7150 microRNA 7150 ncRNA 13-PTNLD9-TUMOR_peak_51723 chr8 119850160 119850349 + 7.24973 NA Intergenic MER21C|LTR|ERVL 114129 NM_002546 4982 Hs.81791 NM_002546 HPRD:04032 TNFRSF11B OCIF|OPG|TR1 tumor necrosis factor receptor superfamily, member 11b protein-coding 13-PTNLD9-TUMOR_peak_1708 chr1 48518310 48518536 + 7.24973 NA Intergenic Intergenic -55861 NM_001194986 388630 Hs.61504 NM_001194986 ENSG00000269113 TRABD2B TIKI2 TraB domain containing 2B protein-coding 13-PTNLD9-TUMOR_peak_8848 chr11 3348406 3348509 + 7.24973 NA Intergenic Intergenic 51995 NM_001242842 7748 Hs.386294 NM_007152 HPRD:03718 ZNF195 HRF1|ZNFP104 zinc finger protein 195 protein-coding 13-PTNLD9-TUMOR_peak_8564 chr10 126849916 126850164 + 7.24973 NA promoter-TSS (NM_001083914) promoter-TSS (NM_001083914) -416 NM_001083914 1488 Hs.501345 NM_001329 HPRD:04016 CTBP2 - C-terminal binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_1372 chr1 41966573 41966723 + 7.24919 NA Intergenic Intergenic -16304 NM_001956 1907 Hs.1407 NM_001956 HPRD:07173 EDN2 ET2|PPET2 endothelin 2 protein-coding 13-PTNLD9-TUMOR_peak_39034 chr4 108746355 108746502 + 7.24637 NA intron (NM_001136258, intron 1 of 6) CpG 707 NM_001136258 166929 Hs.595423 NM_152621 HPRD:11323 SGMS2 SMS2 sphingomyelin synthase 2 protein-coding 13-PTNLD9-TUMOR_peak_23495 chr18 74779543 74779673 + 7.24637 NA intron (NM_001025101, intron 2 of 8) intron (NM_001025101, intron 2 of 8) -50553 NM_001025092 4155 Hs.551713 NM_002385 HPRD:01158 MBP - myelin basic protein protein-coding 13-PTNLD9-TUMOR_peak_50430 chr8 27221214 27221468 + 7.24240 NA intron (NM_173174, intron 6 of 35) intron (NM_173174, intron 6 of 35) 38260 NM_173175 2185 Hs.491322 NM_004103 HPRD:03131 PTK2B CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK protein tyrosine kinase 2 beta protein-coding 13-PTNLD9-TUMOR_peak_52326 chr8 141646186 141646288 + 7.24240 NA promoter-TSS (NM_001164623) promoter-TSS (NM_001164623) -591 NM_001164623 27161 Hs.743313 NM_012154 HPRD:06943 AGO2 EIF2C2|Q10 argonaute RISC catalytic component 2 protein-coding 13-PTNLD9-TUMOR_peak_3210 chr1 143937778 143937940 + 7.23978 NA Intergenic MamRep1161|DNA|TcMar -24699 NM_001287385 554282 NM_001287385 FAM72C - family with sequence similarity 72, member C protein-coding 13-PTNLD9-TUMOR_peak_34288 chr3 39193735 39193889 + 7.23978 NA intron (NM_033027, intron 1 of 4) L2b|LINE|L2 1290 NM_033027 64651 Hs.370950 NM_033027 HPRD:07347 CSRNP1 AXUD1|CSRNP-1|FAM130B|TAIP-3|URAX1 cysteine-serine-rich nuclear protein 1 protein-coding 13-PTNLD9-TUMOR_peak_54507 chr9 116341359 116341465 + 7.23755 NA intron (NM_134427, intron 1 of 4) intron (NM_134427, intron 1 of 4) -1745 NM_001282922 5998 Hs.494875 NM_017790 HPRD:03720 RGS3 C2PA|RGP3 regulator of G-protein signaling 3 protein-coding 13-PTNLD9-TUMOR_peak_43018 chr5 171871374 171871489 + 7.23755 NA intron (NM_001017995, intron 1 of 12) MLT1K|LTR|ERVL-MaLR 10096 NM_001017995 285590 Hs.285666 NM_001017995 HPRD:18591 SH3PXD2B FAD49|FTHS|HOFI|KIAA1295|TKS4|TSK4 SH3 and PX domains 2B protein-coding 13-PTNLD9-TUMOR_peak_34851 chr3 64963477 64963696 + 7.23755 NA intron (NR_038264, intron 4 of 5) intron (NR_038264, intron 4 of 5) 257903 NR_030317 693126 NR_030317 miRBase:MI0003598 MIR548A2 MIRN548A2 microRNA 548a-2 ncRNA 13-PTNLD9-TUMOR_peak_35745 chr3 126632433 126632556 + 7.23755 NA intron (NM_032343, intron 5 of 7) intron (NM_032343, intron 5 of 7) -74943 NM_032242 5361 Hs.432329 NM_032242 HPRD:11868 PLXNA1 NOV|NOVP|PLEXIN-A1|PLXN1 plexin A1 protein-coding 13-PTNLD9-TUMOR_peak_40678 chr5 39656812 39657028 + 7.23755 NA Intergenic L2a|LINE|L2 136387 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LOC101926940 - uncharacterized LOC101926940 ncRNA 13-PTNLD9-TUMOR_peak_220 chr1 6803918 6804067 + 7.23755 NA Intergenic Intergenic 16405 NR_104621 100505887 Hs.250839 NR_104620 ENSG00000228750 LOC100505887 - uncharacterized LOC100505887 ncRNA 13-PTNLD9-TUMOR_peak_26370 chr2 26864138 26864369 + 7.23755 NA promoter-TSS (NM_001029881) promoter-TSS (NM_001029881) -42 NM_001029881 130106 Hs.591579 NM_001029881 HPRD:18726 CIB4 KIP4 calcium and integrin binding family member 4 protein-coding 13-PTNLD9-TUMOR_peak_34157 chr3 29799826 29800138 + 7.23755 NA intron (NM_001003792, intron 5 of 13) intron (NM_001003792, intron 5 of 13) 175665 NR_046556 100873977 Hs.581453 NR_046556 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_22679 chr18 14450278 14450524 + 7.23755 NA Intergenic CpG 48304 NR_024076 440224 Hs.721675 NR_024076 ENSG00000265766 CXADRP3 - coxsackie virus and adenovirus receptor pseudogene 3 pseudo 13-PTNLD9-TUMOR_peak_48451 chr7 98973098 98973202 + 7.22907 NA intron (NM_005720, intron 1 of 9) CpG 852 NM_005720 10095 Hs.489284 NM_005720 HPRD:10366 ARPC1B ARC41|p40-ARC|p41-ARC actin related protein 2/3 complex, subunit 1B, 41kDa protein-coding 13-PTNLD9-TUMOR_peak_36610 chr3 161033870 161033991 + 7.22411 NA Intergenic Intergenic 55941 NM_001040100 165679 Hs.369104 NM_145035 SPTSSB ADMP|C3orf57|SSSPTB serine palmitoyltransferase, small subunit B protein-coding 13-PTNLD9-TUMOR_peak_11626 chr11 129565026 129565132 + 7.22411 NA Intergenic Intergenic -77915 NR_120582 101929557 Hs.385785 NR_120582 LINC01395 - long intergenic non-protein coding RNA 1395 ncRNA 13-PTNLD9-TUMOR_peak_23868 chr19 9047482 9047739 + 7.22411 NA exon (NM_024690, exon 5 of 84) exon (NM_024690, exon 5 of 84) 44408 NM_024690 94025 Hs.432676 NM_024690 ENSG00000181143 MUC16 CA125 mucin 16, cell surface associated protein-coding 13-PTNLD9-TUMOR_peak_33293 chr22 39686787 39686975 + 7.22411 NA Intergenic Intergenic 23035 NR_000028 116938 NR_000028 SNORD83B RNU83B|U83B small nucleolar RNA, C/D box 83B snoRNA 13-PTNLD9-TUMOR_peak_48147 chr7 80377722 80377820 + 7.22406 NA intron (NM_006379, intron 17 of 17) intron (NM_006379, intron 17 of 17) 101802 NM_001289908 948 Hs.120949 NM_000072 HPRD:01430 CD36 BDPLT10|CHDS7|FAT|GP3B|GP4|GPIV|PASIV|SCARB3 CD36 molecule (thrombospondin receptor) protein-coding 13-PTNLD9-TUMOR_peak_53695 chr9 79269612 79269833 + 7.22406 NA intron (NM_015225, intron 10 of 18) intron (NM_015225, intron 10 of 18) -109632 NR_015342 50652 Hs.663766 NR_015342 ENSG00000225937 PCA3 DD3|NCRNA00019|PCAT3 prostate cancer associated 3 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_32362 chr21 41032583 41032722 + 7.22406 NA exon (NM_033172, exon 3 of 3) exon (NM_033172, exon 3 of 3) 3405 NM_033170 10317 Hs.733638 NM_006057 HPRD:06818 B3GALT5 B3GalT-V|B3GalTx|B3T5|GLCT5|beta-1,3-GalTase 5|beta-3-Gx-T5|beta3Gal-T5 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5 protein-coding 13-PTNLD9-TUMOR_peak_30080 chr2 235905087 235905297 + 7.22406 NA intron (NM_014521, intron 2 of 5) intron (NM_014521, intron 2 of 5) 44564 NM_014521 23677 Hs.516777 NM_014521 HPRD:09285 SH3BP4 BOG25|TTP SH3-domain binding protein 4 protein-coding 13-PTNLD9-TUMOR_peak_29729 chr2 211089772 211089866 + 7.22406 NA intron (NM_001608, intron 1 of 10) CpG 396 NM_001608 33 Hs.471277 NM_001608 HPRD:01939 ACADL ACAD4|LCAD acyl-CoA dehydrogenase, long chain protein-coding 13-PTNLD9-TUMOR_peak_42045 chr5 131850169 131850263 + 7.22406 NA Intergenic L1PA2|LINE|L1 -23751 NM_002198 3659 Hs.436061 NM_002198 HPRD:00961 IRF1 IRF-1|MAR interferon regulatory factor 1 protein-coding 13-PTNLD9-TUMOR_peak_56135 chrX 71500443 71500612 + 7.22406 NA Intergenic L2|LINE|L2 -3386 NM_001007 6191 Hs.118076 NM_001007 RPS4X CCG2|DXS306|RPS4|S4|SCAR|SCR10 ribosomal protein S4, X-linked protein-coding 13-PTNLD9-TUMOR_peak_35326 chr3 111447555 111447655 + 7.22406 NA intron (NM_153268, intron 3 of 3) MER113|DNA|hAT-Charlie -3722 NM_001134437 90102 Hs.603252 NM_145753 HPRD:06611 PHLDB2 LL5b|LL5beta pleckstrin homology-like domain, family B, member 2 protein-coding 13-PTNLD9-TUMOR_peak_53954 chr9 92869442 92869680 + 7.22406 NA Intergenic Intergenic -65780 NR_038882 286370 Hs.407589 NR_038882 ENSG00000227555 LOC286370 - uncharacterized LOC286370 ncRNA 13-PTNLD9-TUMOR_peak_16238 chr14 74111554 74111714 + 7.22406 NA promoter-TSS (NM_031427) promoter-TSS (NM_031427) 56 NM_001201366 83544 Hs.271270 NM_031427 HPRD:16616 DNAL1 C14orf168|CILD16 dynein, axonemal, light chain 1 protein-coding 13-PTNLD9-TUMOR_peak_54176 chr9 100843900 100844006 + 7.22406 NA intron (NM_018946, intron 5 of 5) intron (NM_018946, intron 5 of 5) 24994 NM_018946 54187 Hs.522310 NM_018946 HPRD:07285 NANS HEL-S-100|SAS N-acetylneuraminic acid synthase protein-coding 13-PTNLD9-TUMOR_peak_50159 chr8 17435116 17435231 + 7.22406 NA intron (NM_006207, intron 2 of 6) intron (NM_006207, intron 2 of 6) 1231 NM_006207 5157 Hs.458573 NM_006207 HPRD:05206 PDGFRL PDGRL|PRLTS platelet-derived growth factor receptor-like protein-coding 13-PTNLD9-TUMOR_peak_11656 chr11 130253656 130253837 + 7.22406 NA Intergenic Intergenic 44793 NM_007037 11095 Hs.271605 NM_007037 HPRD:05531 ADAMTS8 ADAM-TS8|METH2 ADAM metallopeptidase with thrombospondin type 1 motif, 8 protein-coding 13-PTNLD9-TUMOR_peak_12758 chr12 50936273 50936421 + 7.22406 NA intron (NM_173602, intron 1 of 37) intron (NM_173602, intron 1 of 37) 37579 NM_173602 57609 Hs.505516 NM_020849 HPRD:08751 DIP2B - DIP2 disco-interacting protein 2 homolog B (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_12775 chr12 51663460 51663586 + 7.22406 NA intron (NM_001031628, intron 1 of 3) CpG 471 NM_001033873 57228 Hs.652389 NM_001031628 HPRD:14256 SMAGP hSMAGP small cell adhesion glycoprotein protein-coding 13-PTNLD9-TUMOR_peak_37837 chr4 7738807 7738960 + 7.22406 NA exon (NM_020777, exon 26 of 27) exon (NM_020777, exon 26 of 27) -16934 NR_026892 84740 Hs.663029 NM_032654 ENSG00000272620 AFAP1-AS1 AFAP1-AS|AFAP1AS AFAP1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_28526 chr2 134320382 134320571 + 7.22406 NA intron (NM_207481, intron 1 of 17) intron (NM_207481, intron 1 of 17) 5555 NM_207481 344148 Hs.537329 NM_207363 HPRD:16936 NCKAP5 ERIH1|ERIH2|NAP5 NCK-associated protein 5 protein-coding 13-PTNLD9-TUMOR_peak_9328 chr11 23248055 23248194 + 7.22406 NA Intergenic MLT1H|LTR|ERVL-MaLR 192612 NR_107021 102465860 NR_107021 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 13-PTNLD9-TUMOR_peak_16404 chr14 89462052 89462486 + 7.22406 NA Intergenic Intergenic 171772 NM_001288782 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 13-PTNLD9-TUMOR_peak_200 chr1 6483471 6483751 + 7.22358 NA Intergenic Intergenic -1237 NM_031475 83715 Hs.744222 NM_031475 HPRD:06962 ESPN DFNB36 espin protein-coding 13-PTNLD9-TUMOR_peak_37652 chr4 3293767 3294132 + 7.22358 NA Intergenic CpG -21925 NM_198229 6002 Hs.527061 NM_002926 HPRD:03943 RGS12 - regulator of G-protein signaling 12 protein-coding 13-PTNLD9-TUMOR_peak_15222 chr14 20106837 20107242 + 7.22226 NA Intergenic CpG 75452 NM_001197287 79334 Hs.554706 NM_001197287 OR11H2 C14orf15|OR11H2P|OR11H8P olfactory receptor, family 11, subfamily H, member 2 protein-coding 13-PTNLD9-TUMOR_peak_18675 chr16 19125018 19125327 + 7.22050 NA promoter-TSS (NR_028028) promoter-TSS (NR_028028) -82 NM_001034841 162073 Hs.530899 NM_001034841 HPRD:18743 ITPRIPL2 - inositol 1,4,5-trisphosphate receptor interacting protein-like 2 protein-coding 13-PTNLD9-TUMOR_peak_13265 chr12 69202633 69202781 + 7.22050 NA promoter-TSS (NM_001145337) promoter-TSS (NM_001145337) -90 NM_001145340 4193 Hs.484551 NM_002392 HPRD:01272 MDM2 ACTFS|HDMX|hdm2 MDM2 proto-oncogene, E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_25032 chr19 41731653 41731791 + 7.21800 NA promoter-TSS (NM_001278599) promoter-TSS (NM_001278599) -938 NM_001278599 558 Hs.590970 NM_001699 HPRD:00171 AXL JTK11|UFO AXL receptor tyrosine kinase protein-coding 13-PTNLD9-TUMOR_peak_54 chr1 999568 999766 + 7.21615 NA Intergenic Intergenic 10020 NM_001205252 401934 Hs.568137 NM_001205252 RNF223 - ring finger protein 223 protein-coding 13-PTNLD9-TUMOR_peak_40241 chr5 6759669 6759842 + 7.21566 NA Intergenic Intergenic 13654 NM_001171806 11044 Hs.481542 NM_006999 HPRD:09239 PAPD7 LAK-1|LAK1|POLK|POLS|TRF4|TRF4-1|TRF41|TUTASE5 PAP associated domain containing 7 protein-coding 13-PTNLD9-TUMOR_peak_15267 chr14 21562286 21562412 + 7.21566 NA intron (NM_001102454, intron 1 of 4) intron (NM_001102454, intron 1 of 4) 4459 NM_016423 51222 Hs.250493 NM_016423 HPRD:05435 ZNF219 ZFP219 zinc finger protein 219 protein-coding 13-PTNLD9-TUMOR_peak_53842 chr9 88132281 88132414 + 7.21566 NA Intergenic Intergenic 224597 NM_001286715 23287 Hs.719980 NM_015239 HPRD:08442 AGTPBP1 CCP1|NNA1 ATP/GTP binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_55529 chrX 11129323 11129560 + 7.21566 NA promoter-TSS (NM_001122608) promoter-TSS (NM_001122608) 35 NM_001171991 3052 Hs.211571 NM_005333 HPRD:02085 HCCS CCHL|MCOPS7|MLS holocytochrome c synthase protein-coding 13-PTNLD9-TUMOR_peak_8111 chr10 99302070 99302198 + 7.21566 NA intron (NM_024954, intron 1 of 2) intron (NM_024954, intron 1 of 2) -30064 NM_001291218 26287 Hs.73708 NM_020349 HPRD:12460 ANKRD2 ARPP ankyrin repeat domain 2 (stretch responsive muscle) protein-coding 13-PTNLD9-TUMOR_peak_41440 chr5 81702138 81702363 + 7.21566 NA Intergenic Intergenic 126969 NM_001017971 92270 Hs.729805 NM_001017971 HPRD:18710 ATP6AP1L - ATPase, H+ transporting, lysosomal accessory protein 1-like protein-coding 13-PTNLD9-TUMOR_peak_40325 chr5 10692084 10692205 + 7.21566 NA intron (NM_004394, intron 2 of 3) intron (NM_004394, intron 2 of 3) 69243 NM_004394 1611 Hs.75189 NM_004394 HPRD:02977 DAP - death-associated protein protein-coding 13-PTNLD9-TUMOR_peak_27328 chr2 75092064 75092300 + 7.21566 NA intron (NM_000189, intron 2 of 17) intron (NM_000189, intron 2 of 17) 32400 NM_000189 3099 Hs.406266 NM_000189 HPRD:03080 HK2 HKII|HXK2 hexokinase 2 protein-coding 13-PTNLD9-TUMOR_peak_4516 chr1 177418326 177418438 + 7.21566 NA Intergenic L2c|LINE|L2 -251277 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LOC101928778 - uncharacterized LOC101928778 ncRNA 13-PTNLD9-TUMOR_peak_7987 chr10 91111813 91111994 + 7.21566 NA Intergenic MER72B|LTR|ERV1 19667 NM_001031683 3437 Hs.47338 NM_001549 HPRD:05228 IFIT3 CIG-49|GARG-49|IFI60|IFIT4|IRG2|ISG60|P60|RIG-G interferon-induced protein with tetratricopeptide repeats 3 protein-coding 13-PTNLD9-TUMOR_peak_344 chr1 9731526 9731709 + 7.21566 NA intron (NM_005026, intron 1 of 23) intron (NM_005026, intron 1 of 23) -16973 NR_027045 644997 Hs.568595 NM_001045478 ENSG00000179840 C1orf200 - chromosome 1 open reading frame 200 ncRNA 13-PTNLD9-TUMOR_peak_8326 chr10 112155656 112155755 + 7.21566 NA Intergenic Intergenic -90998 NM_005871 10285 Hs.632093 NM_005871 SMNDC1 SMNR|SPF30|TDRD16C survival motor neuron domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_40434 chr5 16913706 16913854 + 7.21566 NA intron (NM_012334, intron 1 of 40) intron (NM_012334, intron 1 of 40) 22605 NM_012334 4651 Hs.481720 NM_012334 HPRD:03283 MYO10 - myosin X protein-coding 13-PTNLD9-TUMOR_peak_6492 chr10 12342580 12342712 + 7.21566 NA Intergenic THE1B|LTR|ERVL-MaLR -48937 NM_020397 57118 Hs.659517 NM_020397 HPRD:06409 CAMK1D CKLiK|CaM-K1|CaMKID calcium/calmodulin-dependent protein kinase ID protein-coding 13-PTNLD9-TUMOR_peak_25386 chr19 50050383 50050535 + 7.21566 NA Intergenic Intergenic 19584 NM_020650 57333 Hs.567550 NM_020650 HPRD:17962 RCN3 RLP49 reticulocalbin 3, EF-hand calcium binding domain protein-coding 13-PTNLD9-TUMOR_peak_10671 chr11 75863277 75863431 + 7.21566 NA Intergenic Intergenic 54220 NM_004626 7481 Hs.108219 NM_004626 HPRD:04741 WNT11 HWNT11 wingless-type MMTV integration site family, member 11 protein-coding 13-PTNLD9-TUMOR_peak_17194 chr15 44962907 44963028 + 7.21566 NA intron (NM_001145112, intron 7 of 15) intron (NM_001145112, intron 7 of 15) 6119 NM_001145112 197135 Hs.11594 NM_001145112 ENSG00000229474 PATL2 Pat1a|hPat1a protein associated with topoisomerase II homolog 2 (yeast) protein-coding 13-PTNLD9-TUMOR_peak_20984 chr17 37873201 37873389 + 7.21566 NA intron (NM_001289936, intron 18 of 30) intron (NM_001289936, intron 18 of 30) -9453 NR_039881 100616132 NR_039881 MIR4728 - microRNA 4728 ncRNA 13-PTNLD9-TUMOR_peak_43595 chr6 4607663 4607848 + 7.21566 NA Intergenic Intergenic -3044 NR_122107 497048 Hs.591355 NM_001011540 KU-MEL-3 - uncharacterized LOC497048 ncRNA 13-PTNLD9-TUMOR_peak_4454 chr1 174009574 174009822 + 7.21566 NA Intergenic MIR|SINE|MIR -47488 NM_001300850 149041 Hs.30258 NM_172071 HPRD:13913 RC3H1 RNF198|ROQUIN ring finger and CCCH-type domains 1 protein-coding 13-PTNLD9-TUMOR_peak_47913 chr7 73456725 73456897 + 7.21566 NA intron (NM_001278939, intron 5 of 33) intron (NM_001278939, intron 5 of 33) 14692 NM_001278915 2006 Hs.647061 NM_000501 HPRD:00556 ELN SVAS|WBS|WS elastin protein-coding 13-PTNLD9-TUMOR_peak_50266 chr8 22027598 22027692 + 7.21566 NA intron (NR_033404, intron 1 of 15) intron (NR_033404, intron 1 of 15) 4992 NM_006129 649 Hs.1274 NM_001199 HPRD:00209 BMP1 OI13|PCOLC|PCP|PCP2|TLD bone morphogenetic protein 1 protein-coding 13-PTNLD9-TUMOR_peak_2529 chr1 94454627 94454845 + 7.21566 NA Intergenic Intergenic -79724 NM_002061 2730 Hs.315562 NM_002061 GCLM GLCLR glutamate-cysteine ligase, modifier subunit protein-coding 13-PTNLD9-TUMOR_peak_18715 chr16 20925185 20925320 + 7.21566 NA intron (NM_001128301, intron 2 of 4) AluY|SINE|Alu 13177 NM_001128302 57149 Hs.745012 NM_020424 HPRD:14254 LYRM1 A211C6.1 LYR motif containing 1 protein-coding 13-PTNLD9-TUMOR_peak_16963 chr15 32726994 32727113 + 7.21207 NA promoter-TSS (NR_026859).2 promoter-TSS (NR_026859).2 12 NR_026859 89837 Hs.510848 NR_026859 ENSG00000178081 ULK4P3 D-X|FAM7A3 ULK4 pseudogene 3 pseudo 13-PTNLD9-TUMOR_peak_27931 chr2 107128213 107128328 + 7.20555 NA Intergenic Intergenic -43469 NM_001144013 653489 Hs.726367 NM_001144013 ENSG00000153165 RGPD3 RGP3 RANBP2-like and GRIP domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_33797 chr3 12526158 12526290 + 7.20555 NA 5' UTR (NM_001145395, exon 1 of 9) 5' UTR (NM_001145395, exon 1 of 9) 214 NM_001145392 80746 Hs.335550 NM_025265 HPRD:10576 TSEN2 PCH2B|SEN2|SEN2L TSEN2 tRNA splicing endonuclease subunit protein-coding 13-PTNLD9-TUMOR_peak_34959 chr3 72388078 72388288 + 7.20555 NA Intergenic Intergenic 107591 NM_012234 23429 Hs.7910 NM_012234 RYBP AAP1|DEDAF|YEAF1 RING1 and YY1 binding protein protein-coding 13-PTNLD9-TUMOR_peak_47220 chr7 34214612 34214786 + 7.20555 NA Intergenic L1PA2|LINE|L1 270176 NM_133468 168667 Hs.660998 NM_133468 HPRD:16368 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 13-PTNLD9-TUMOR_peak_34690 chr3 53810950 53811071 + 7.20555 NA intron (NM_000720, intron 38 of 48) intron (NM_000720, intron 38 of 48) 69410 NM_018397 55349 Hs.126688 NM_018397 CHDH - choline dehydrogenase protein-coding 13-PTNLD9-TUMOR_peak_16587 chr14 100906587 100906787 + 7.20555 NA intron (NM_001161476, intron 2 of 6) intron (NM_001161476, intron 2 of 6) 63854 NM_024515 79446 Hs.497600 NM_024515 HPRD:14649 WDR25 C14orf67 WD repeat domain 25 protein-coding 13-PTNLD9-TUMOR_peak_19385 chr16 55536731 55536981 + 7.20555 NA intron (NM_004530, intron 12 of 12) intron (NM_004530, intron 12 of 12) -6057 NM_017839 54947 Hs.460857 NM_017839 HPRD:07913 LPCAT2 AYTL1|LysoPAFAT lysophosphatidylcholine acyltransferase 2 protein-coding 13-PTNLD9-TUMOR_peak_35275 chr3 107849668 107849768 + 7.20103 NA intron (NR_110028, intron 1 of 2) Charlie20a|DNA|hAT-Charlie 5050 NR_110028 101929623 Hs.570653 NR_110028 LINC01215 - long intergenic non-protein coding RNA 1215 ncRNA 13-PTNLD9-TUMOR_peak_1871 chr1 55353575 55353716 + 7.20103 NA promoter-TSS (NM_014762) promoter-TSS (NM_014762) -724 NM_014762 1718 Hs.498727 NM_014762 HPRD:05916 DHCR24 DCE|Nbla03646|SELADIN1|seladin-1 24-dehydrocholesterol reductase protein-coding 13-PTNLD9-TUMOR_peak_20990 chr17 38085560 38085685 + 7.19809 NA Intergenic Plat_L3|LINE|CR1 -1738 NM_139280 94103 Hs.514151 NM_139280 HPRD:17803 ORMDL3 - ORMDL sphingolipid biosynthesis regulator 3 protein-coding 13-PTNLD9-TUMOR_peak_35094 chr3 89400575 89400676 + 7.19809 NA intron (NM_182644, intron 5 of 6) L1PA2|LINE|L1 243951 NM_182644 2042 Hs.123642 NM_005233 HPRD:01555 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 13-PTNLD9-TUMOR_peak_32315 chr21 39860213 39860491 + 7.19809 NA intron (NR_111949, intron 3 of 4) intron (NR_111949, intron 3 of 4) 10076 NM_001136155 2078 Hs.473819 NM_004449 HPRD:01298 ERG erg-3|p55 v-ets avian erythroblastosis virus E26 oncogene homolog protein-coding 13-PTNLD9-TUMOR_peak_36022 chr3 134371312 134371485 + 7.19809 NA Intergenic Intergenic -1534 NM_178554 339855 Hs.146730 NM_178554 KY - kyphoscoliosis peptidase protein-coding 13-PTNLD9-TUMOR_peak_4465 chr1 174968443 174968597 + 7.19650 NA promoter-TSS (NM_014412) promoter-TSS (NM_014412) -51 NM_001007214 27101 Hs.508524 NM_014412 HPRD:07316 CACYBP GIG5|S100A6BP|SIP calcyclin binding protein protein-coding 13-PTNLD9-TUMOR_peak_42891 chr5 162936417 162936562 + 7.19357 NA intron (NM_013283, intron 1 of 6) MER5A|DNA|hAT-Charlie 3955 NM_013283 27430 Hs.54642 NM_013283 HPRD:05701 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase II, beta protein-coding 13-PTNLD9-TUMOR_peak_29024 chr2 169930611 169930748 + 7.19357 NA intron (NM_001142270, intron 1 of 5) intron (NM_001142270, intron 1 of 5) 1594 NM_001142270 10170 Hs.179608 NM_005771 HPRD:09916 DHRS9 3-alpha-HSD|3ALPHA-HSD|RDH-E2|RDH-TBE|RDH15|RDHL|RDHTBE|RETSDR8|SDR9C4 dehydrogenase/reductase (SDR family) member 9 protein-coding 13-PTNLD9-TUMOR_peak_53465 chr9 67733818 67733957 + 7.19153 NA Intergenic Intergenic -45236 NR_121606 102723709 Hs.743015 NR_121606 LOC102723709 - uncharacterized LOC102723709 ncRNA 13-PTNLD9-TUMOR_peak_6545 chr10 14920279 14920451 + 7.19153 NA promoter-TSS (NM_024670) promoter-TSS (NM_024670) -417 NM_001193426 79723 Hs.554883 NM_024670 HPRD:07580 SUV39H2 KMT1B suppressor of variegation 3-9 homolog 2 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_23292 chr18 55981544 55981751 + 7.19153 NA intron (NM_001243960, intron 5 of 28) AluSz|SINE|Alu 92893 NM_001144966 23327 Hs.185677 NM_015277 HPRD:05903 NEDD4L NEDD4-2|NEDD4.2|RSP5|hNEDD4-2 neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_3877 chr1 155607356 155607512 + 7.19153 NA Intergenic LTR12F|LTR|ERV1 27455 NR_024117 100129405 Hs.656361 NR_024117 MSTO2P MSTO2 misato family member 2, pseudogene pseudo 13-PTNLD9-TUMOR_peak_37841 chr4 7844392 7844736 + 7.19153 NA intron (NM_198595, intron 5 of 16) intron (NM_198595, intron 5 of 16) 88747 NR_026892 84740 Hs.663029 NM_032654 ENSG00000272620 AFAP1-AS1 AFAP1-AS|AFAP1AS AFAP1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_51841 chr8 124693332 124693542 + 7.19153 NA 3' UTR (NM_004306, exon 11 of 11) 3' UTR (NM_004306, exon 11 of 11) -28247 NM_001081675 340359 Hs.450252 NM_001081675 ENSG00000175946 KLHL38 C8ORFK36 kelch-like family member 38 protein-coding 13-PTNLD9-TUMOR_peak_336 chr1 9533264 9533365 + 7.19153 NA Intergenic Intergenic -44259 NR_104622 100506022 Hs.131775 NR_104622 LOC100506022 - uncharacterized LOC100506022 ncRNA 13-PTNLD9-TUMOR_peak_47359 chr7 44517082 44517216 + 7.18370 NA intron (NM_015332, intron 2 of 5) intron (NM_015332, intron 2 of 5) 13236 NM_015332 23386 Hs.488171 NM_015332 NUDCD3 NudCL NudC domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_40309 chr5 10507818 10507980 + 7.18370 NA Intergenic MER77|LTR|ERVL -5059 NR_104606 101929412 Hs.508287 NR_104606 ENSG00000249396 LOC101929412 - uncharacterized LOC101929412 ncRNA 13-PTNLD9-TUMOR_peak_2908 chr1 113606664 113606783 + 7.18370 NA intron (NR_103777, intron 1 of 2) SVA_C|Other|Other 9001 NR_103777 100996251 Hs.382067 NR_103777 ENSG00000238198 LOC100996251 - uncharacterized LOC100996251 ncRNA 13-PTNLD9-TUMOR_peak_51766 chr8 121457296 121457410 + 7.18370 NA promoter-TSS (NM_022045) promoter-TSS (NM_022045) -285 NM_022045 27085 Hs.657656 NM_022045 HPRD:12068 MTBP MDM2BP MDM2 binding protein protein-coding 13-PTNLD9-TUMOR_peak_40072 chr4 189855519 189855656 + 7.18370 NA Intergenic LTR8|LTR|ERV1 478855 NR_033869 401164 Hs.435756 NR_033869 ENSG00000249378 LINC01060 - long intergenic non-protein coding RNA 1060 ncRNA 13-PTNLD9-TUMOR_peak_39307 chr4 128703383 128703491 + 7.18370 NA promoter-TSS (NM_014278) promoter-TSS (NM_014278) -16 NM_014278 22824 Hs.135554 NM_014278 HSPA4L APG-1|HSPH3|Osp94 heat shock 70kDa protein 4-like protein-coding 13-PTNLD9-TUMOR_peak_42189 chr5 135854658 135854758 + 7.18370 NA Intergenic LTR16A|LTR|ERVL -153544 NM_001167576 57113 Hs.591263 NM_020389 HPRD:18228 TRPC7 TRP7 transient receptor potential cation channel, subfamily C, member 7 protein-coding 13-PTNLD9-TUMOR_peak_11636 chr11 129723855 129724053 + 7.18370 NA intron (NM_138788, intron 2 of 5) intron (NM_138788, intron 2 of 5) 38213 NM_138788 120224 Hs.504301 NM_138788 HPRD:14020 TMEM45B - transmembrane protein 45B protein-coding 13-PTNLD9-TUMOR_peak_53771 chr9 84440857 84440966 + 7.18370 NA Intergenic Intergenic -87441 NR_026851 347127 Hs.215235 NM_198509 ENSG00000240632 SPATA31D5P FAM75D5|FAM75D5P SPATA31 subfamily D, member 5, pseudogene pseudo 13-PTNLD9-TUMOR_peak_18793 chr16 23681598 23681776 + 7.18370 NA non-coding (NR_037573, exon 7 of 7) non-coding (NR_037573, exon 7 of 7) -8514 NM_005030 5347 Hs.592049 NM_005030 HPRD:03652 PLK1 PLK|STPK13 polo-like kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_30540 chr20 18774602 18774763 + 7.18370 NA promoter-TSS (NR_026885) promoter-TSS (NR_026885) -11 NR_026885 100270804 Hs.598768 NR_026885 LOC100270804 - uncharacterized LOC100270804 ncRNA 13-PTNLD9-TUMOR_peak_34787 chr3 58626491 58626681 + 7.18370 NA intron (NM_138805, intron 6 of 9) intron (NM_138805, intron 6 of 9) -13249 NM_001282714 11170 Hs.506357 NM_007177 HPRD:09753 FAM107A DRR1|TU3A family with sequence similarity 107, member A protein-coding 13-PTNLD9-TUMOR_peak_39496 chr4 142461658 142462080 + 7.18370 NA Intergenic L1MB5|LINE|L1 -95880 NM_172175 3600 Hs.168132 NM_000585 HPRD:02776 IL15 IL-15 interleukin 15 protein-coding 13-PTNLD9-TUMOR_peak_51143 chr8 73448946 73449259 + 7.18370 NA promoter-TSS (NM_004770) promoter-TSS (NM_004770) -524 NM_004770 9312 Hs.661102 NM_004770 HPRD:09666 KCNB2 KV2.2 potassium voltage-gated channel, Shab-related subfamily, member 2 protein-coding 13-PTNLD9-TUMOR_peak_23453 chr18 72136036 72136235 + 7.18370 NA Intergenic Intergenic -11632 NM_001044369 125704 Hs.371690 NM_001044369 ENSG00000187773 FAM69C C18orf51 family with sequence similarity 69, member C protein-coding 13-PTNLD9-TUMOR_peak_14662 chr13 42535251 42535358 + 7.18370 NA promoter-TSS (NR_039974) promoter-TSS (NR_039974) -1 NR_039974 100507240 Hs.147766 NR_039974 VWA8-AS1 - VWA8 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_41083 chr5 65814686 65814956 + 7.18370 NA Intergenic L1MCa|LINE|L1 -7389 NR_105001 101928769 Hs.97903 NR_105001 ENSG00000250313 LOC101928769 - uncharacterized LOC101928769 ncRNA 13-PTNLD9-TUMOR_peak_40374 chr5 14165706 14165821 + 7.18370 NA intron (NM_007118, intron 1 of 56) intron (NM_007118, intron 1 of 56) 21934 NM_007118 7204 Hs.130031 NM_007118 HPRD:03537 TRIO ARHGEF23|tgat trio Rho guanine nucleotide exchange factor protein-coding 13-PTNLD9-TUMOR_peak_18184 chr16 1069301 1069461 + 7.18370 NA Intergenic CpG 37573 NM_014587 30812 Hs.243678 NM_014587 HPRD:16175 SOX8 - SRY (sex determining region Y)-box 8 protein-coding 13-PTNLD9-TUMOR_peak_27836 chr2 101413222 101413337 + 7.18370 NA Intergenic Intergenic -23334 NM_002518 4862 Hs.156832 NM_002518 HPRD:09137 NPAS2 MOP4|PASD4|bHLHe9 neuronal PAS domain protein 2 protein-coding 13-PTNLD9-TUMOR_peak_51707 chr8 119208297 119208392 + 7.18370 NA non-coding (NR_109794, exon 5 of 5) non-coding (NR_109794, exon 5 of 5) -84286 NM_000127 2131 Hs.492618 NM_000127 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_17982 chr15 91388538 91388802 + 7.18370 NA Intergenic Intergenic -23152 NM_002569 5045 Hs.513153 NM_002569 HPRD:00653 FURIN FUR|PACE|PCSK3|SPC1 furin (paired basic amino acid cleaving enzyme) protein-coding 13-PTNLD9-TUMOR_peak_35655 chr3 124758153 124758326 + 7.18370 NA intron (NM_020733, intron 1 of 16) intron (NM_020733, intron 1 of 16) 16563 NM_020733 57493 Hs.477420 NM_020733 ENSG00000173706 HEG1 HEG|MST112|MSTP112 heart development protein with EGF-like domains 1 protein-coding 13-PTNLD9-TUMOR_peak_28934 chr2 163335528 163335651 + 7.18370 NA intron (NM_033272, intron 6 of 15) intron (NM_033272, intron 6 of 15) 135006 NM_012198 25801 Hs.377894 NM_012198 GCA GCL grancalcin, EF-hand calcium binding protein protein-coding 13-PTNLD9-TUMOR_peak_54674 chr9 124374834 124374955 + 7.17984 NA intron (NM_032552, intron 1 of 16) intron (NM_032552, intron 1 of 16) 45513 NM_032552 153090 Hs.522378 NM_032552 HPRD:09903 DAB2IP AF9Q34|AIP-1|AIP1|DIP1/2 DAB2 interacting protein protein-coding 13-PTNLD9-TUMOR_peak_335 chr1 9526901 9527306 + 7.17984 NA Intergenic Intergenic -38048 NR_104622 100506022 Hs.131775 NR_104622 LOC100506022 - uncharacterized LOC100506022 ncRNA 13-PTNLD9-TUMOR_peak_21864 chr17 66288141 66288416 + 7.17984 NA promoter-TSS (NM_001174166) promoter-TSS (NM_001174166) 642 NM_001267727 22901 Hs.437249 NM_014960 ARSG - arylsulfatase G protein-coding 13-PTNLD9-TUMOR_peak_5125 chr1 204098268 204098372 + 7.17984 NA Intergenic Intergenic -12216 NR_123739 101929441 Hs.736889 NR_123739 LOC101929441 - uncharacterized LOC101929441 ncRNA 13-PTNLD9-TUMOR_peak_18524 chr16 11495018 11495240 + 7.17984 NA Intergenic Intergenic 55818 NM_152308 116028 Hs.347524 NM_152308 HPRD:14497 RMI2 BLAP18|C16orf75 RecQ mediated genome instability 2 protein-coding 13-PTNLD9-TUMOR_peak_1992 chr1 61515649 61515922 + 7.17984 NA Intergenic Intergenic -27161 NM_001145511 4774 Hs.740757 NM_005595 HPRD:09007 NFIA CTF|NF-I/A|NF1-A|NFI-A|NFI-L nuclear factor I/A protein-coding 13-PTNLD9-TUMOR_peak_17261 chr15 49462545 49462659 + 7.17984 NA intron (NM_002044, intron 1 of 9) intron (NM_002044, intron 1 of 9) 389 NM_002044 2585 Hs.122006 NM_002044 HPRD:00657 GALK2 GK2 galactokinase 2 protein-coding 13-PTNLD9-TUMOR_peak_14043 chr12 120832559 120832719 + 7.17984 NA Intergenic Intergenic -25656 NM_002442 4440 Hs.158311 NM_002442 HPRD:04509 MSI1 - musashi RNA-binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_2277 chr1 82172446 82172571 + 7.17984 NA intron (NM_001297704, intron 1 of 20) intron (NM_001297704, intron 1 of 20) 7053 NM_001297704 23266 Hs.24212 NM_012302 HPRD:06116 LPHN2 CIRL2|CL2|LEC1|LPHH1 latrophilin 2 protein-coding 13-PTNLD9-TUMOR_peak_54617 chr9 122045521 122045649 + 7.17984 NA intron (NM_014618, intron 2 of 7) MER5A|DNA|hAT-Charlie 86154 NM_014618 1620 Hs.532316 NM_014618 HPRD:04181 BRINP1 DBC1|DBCCR1|FAM5A bone morphogenetic protein/retinoic acid inducible neural-specific 1 protein-coding 13-PTNLD9-TUMOR_peak_26400 chr2 27763547 27763647 + 7.17984 NA Intergenic SVA_D|Other|Other -35792 NM_032266 84226 Hs.131021 NM_032266 HPRD:09849 C2orf16 - chromosome 2 open reading frame 16 protein-coding 13-PTNLD9-TUMOR_peak_35457 chr3 115724305 115724439 + 7.17984 NA intron (NM_002338, intron 3 of 6) intron (NM_002338, intron 3 of 6) -354499 NR_109998 101926903 Hs.26479 NR_109998 ENSG00000240922 LSAMP-AS1 - uncharacterized LOC101926903 ncRNA 13-PTNLD9-TUMOR_peak_27231 chr2 71204416 71204755 + 7.17984 NA promoter-TSS (NM_024933) promoter-TSS (NM_024933) -990 NM_001115116 79998 Hs.512744 NM_024933 HPRD:07762 ANKRD53 - ankyrin repeat domain 53 protein-coding 13-PTNLD9-TUMOR_peak_35370 chr3 112079561 112079769 + 7.17984 NA intron (NM_001004196, intron 6 of 6) intron (NM_001004196, intron 6 of 6) 27749 NM_005944 4345 Hs.79015 NM_005944 ENSG00000091972 CD200 MOX1|MOX2|MRC|OX-2 CD200 molecule protein-coding 13-PTNLD9-TUMOR_peak_38896 chr4 92713050 92713153 + 7.17984 NA Intergenic L1PA2|LINE|L1 -512449 NM_001286838 2895 Hs.162727 NM_001510 HPRD:06781 GRID2 GluD2 glutamate receptor, ionotropic, delta 2 protein-coding 13-PTNLD9-TUMOR_peak_55575 chrX 15693767 15693968 + 7.17984 NA non-coding (NR_026551, exon 2 of 5) non-coding (NR_026551, exon 2 of 5) 828 NR_026551 340591 Hs.732244 NR_026551 ENSG00000186312 CA5BP1 CA5BL|CA5BP|PRO2325 carbonic anhydrase VB pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_4829 chr1 192735496 192735628 + 7.17984 NA Intergenic Intergenic -42607 NM_002923 5997 Hs.78944 NM_002923 HPRD:02917 RGS2 G0S8 regulator of G-protein signaling 2 protein-coding 13-PTNLD9-TUMOR_peak_4324 chr1 168115167 168115274 + 7.17984 NA Intergenic Intergenic -8315 NM_001267609 23432 Hs.271809 NM_007369 HPRD:17070 GPR161 RE2 G protein-coupled receptor 161 protein-coding 13-PTNLD9-TUMOR_peak_34861 chr3 65949583 65949754 + 7.17984 NA intron (NM_001033057, intron 1 of 22) MIRb|SINE|MIR 70177 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_6778 chr10 28955099 28955206 + 7.17984 NA Intergenic Intergenic -11272 NM_012342 25805 Hs.533336 NM_012342 HPRD:05117 BAMBI NMA BMP and activin membrane-bound inhibitor protein-coding 13-PTNLD9-TUMOR_peak_52054 chr8 130694325 130694444 + 7.17984 NA Intergenic Intergenic 104750 NM_031415 56169 Hs.133244 NM_031415 HPRD:12222 GSDMC MLZE gasdermin C protein-coding 13-PTNLD9-TUMOR_peak_1351 chr1 41824987 41825144 + 7.17436 NA Intergenic Intergenic -2538 NM_001291281 100132074 Hs.559677 NM_001291281 ENSG00000204060 FOXO6 - forkhead box O6 protein-coding 13-PTNLD9-TUMOR_peak_6466 chr10 11729410 11729516 + 7.17400 NA Intergenic Intergenic -54893 NM_024693 79746 Hs.22242 NM_024693 HPRD:10930 ECHDC3 - enoyl CoA hydratase domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_1735 chr1 49722947 49723420 + 7.17400 NA intron (NM_032785, intron 3 of 13) L1PA3|LINE|L1 214574 NR_046839 100874313 Hs.551277 NR_046839 AGBL4-IT1 - AGBL4 intronic transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_45057 chr6 42946906 42947049 + 7.17400 NA promoter-TSS (NM_000287) promoter-TSS (NM_000287) 4 NM_000287 5190 Hs.656425 NM_000287 HPRD:03293 PEX6 PAF-2|PAF2|PBD4A|PDB4B|PXAAA1 peroxisomal biogenesis factor 6 protein-coding 13-PTNLD9-TUMOR_peak_44169 chr6 25173140 25173323 + 7.17229 NA Intergenic Intergenic -34611 NR_027626 8418 Hs.484918 NR_002174 CMAHP CMAH|CSAH cytidine monophospho-N-acetylneuraminic acid hydroxylase, pseudogene pseudo 13-PTNLD9-TUMOR_peak_15456 chr14 31731490 31731587 + 7.17229 NA Intergenic Intergenic -54809 NM_015382 25831 Hs.708017 NM_015382 HPRD:17098 HECTD1 EULIR HECT domain containing E3 ubiquitin protein ligase 1 protein-coding 13-PTNLD9-TUMOR_peak_12186 chr12 13043735 13043963 + 7.16993 NA promoter-TSS (NM_003979) promoter-TSS (NM_003979) -107 NM_003979 9052 Hs.631733 NM_003979 GPRC5A GPCR5A|RAI3|RAIG1 G protein-coupled receptor, class C, group 5, member A protein-coding 13-PTNLD9-TUMOR_peak_48486 chr7 99724374 99724518 + 7.16993 NA 5' UTR (NM_203397, exon 1 of 2) 5' UTR (NM_203397, exon 1 of 2) 126 NM_203397 255374 Hs.632319 NM_203397 HPRD:18584 MBLAC1 - metallo-beta-lactamase domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_48953 chr7 127662783 127662906 + 7.16307 NA intron (NM_014390, intron 16 of 23) intron (NM_014390, intron 16 of 23) 8158 NM_022143 64101 Hs.655003 NM_022143 HPRD:10060 LRRC4 NGL-2 leucine rich repeat containing 4 protein-coding 13-PTNLD9-TUMOR_peak_48442 chr7 98805739 98805919 + 7.16307 NA promoter-TSS (NM_001145715) promoter-TSS (NM_001145715) -740 NM_001145715 402569 Hs.253050 NM_001145715 ENSG00000185467 KPNA7 - karyopherin alpha 7 (importin alpha 8) protein-coding 13-PTNLD9-TUMOR_peak_28599 chr2 139179044 139179140 + 7.16307 NA Intergenic Intergenic -80258 NM_001001664 339745 Hs.333297 NM_001001664 HPRD:11261 SPOPL BTBD33 speckle-type POZ protein-like protein-coding 13-PTNLD9-TUMOR_peak_13984 chr12 118241302 118241445 + 7.16307 NA intron (NM_173598, intron 3 of 19) AluY|SINE|Alu 164655 NM_173598 283455 Hs.375836 NM_173598 HPRD:13952 KSR2 - kinase suppressor of ras 2 protein-coding 13-PTNLD9-TUMOR_peak_1470 chr1 43889398 43889534 + 7.16307 NA intron (NM_015284, intron 15 of 70) intron (NM_015284, intron 15 of 70) -24744 NR_106793 102465440 NR_106793 MIR6735 hsa-mir-6735 microRNA 6735 ncRNA 13-PTNLD9-TUMOR_peak_49228 chr7 135242442 135242953 + 7.15626 NA promoter-TSS (NM_015135) promoter-TSS (NM_015135) 35 NM_015135 23165 Hs.743250 NM_015135 HPRD:17653 NUP205 C7orf14 nucleoporin 205kDa protein-coding 13-PTNLD9-TUMOR_peak_10725 chr11 77898999 77899178 + 7.15626 NA promoter-TSS (NM_020798) promoter-TSS (NM_020798) 576 NM_001029859 283219 Hs.528439 NM_001029859 HPRD:18763 KCTD21 KCASH2 potassium channel tetramerization domain containing 21 protein-coding 13-PTNLD9-TUMOR_peak_9873 chr11 57089973 57090268 + 7.15331 NA intron (NM_033396, intron 1 of 11) intron (NM_033396, intron 1 of 11) 2293 NM_033396 85456 Hs.530730 NM_033396 HPRD:06164 TNKS1BP1 TAB182 tankyrase 1 binding protein 1, 182kDa protein-coding 13-PTNLD9-TUMOR_peak_30862 chr20 33851403 33851616 + 7.14524 NA intron (NM_006690, intron 4 of 8) L2c|LINE|L2 14451 NR_102706 101410538 Hs.356273 NR_102705 MMP24-AS1 - MMP24 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_10142 chr11 64014859 64014978 + 7.14524 NA promoter-TSS (NM_138689) promoter-TSS (NM_138689) -505 NM_138689 26472 Hs.523760 NM_138689 HPRD:18513 PPP1R14B PHI-1|PLCB3N|PNG|SOM172 protein phosphatase 1, regulatory (inhibitor) subunit 14B protein-coding 13-PTNLD9-TUMOR_peak_2778 chr1 110163572 110163785 + 7.14524 NA exon (NM_004037, exon 1 of 18) exon (NM_004037, exon 1 of 18) 475 NM_004037 271 Hs.82927 NM_004037 HPRD:11808 AMPD2 PCH9|SPG63 adenosine monophosphate deaminase 2 protein-coding 13-PTNLD9-TUMOR_peak_13642 chr12 104613862 104613998 + 7.14524 NA intron (NM_001093771, intron 1 of 16) intron (NM_001093771, intron 1 of 16) 4373 NM_001093771 7296 Hs.654922 NM_003330 HPRD:03068 TXNRD1 GRIM-12|TR|TR1|TRXR1|TXNR thioredoxin reductase 1 protein-coding 13-PTNLD9-TUMOR_peak_48468 chr7 99327155 99327406 + 7.14433 NA intron (NM_001256497, intron 2 of 14) LTR7C|LTR|ERV1 5543 NM_000765 1551 Hs.111944 NM_000765 HPRD:05630 CYP3A7 CP37|CYPIIIA7|P-450(HFL33)|P-450111A7|P450-HFLA cytochrome P450, family 3, subfamily A, polypeptide 7 protein-coding 13-PTNLD9-TUMOR_peak_15185 chr13 115079737 115079902 + 7.14433 NA promoter-TSS (NM_032436) promoter-TSS (NM_032436) -146 NM_001164145 283489 Hs.7542 NM_032436 HPRD:10707 CHAMP1 C13orf8|CAMP|CHAMP|ZNF828 chromosome alignment maintaining phosphoprotein 1 protein-coding 13-PTNLD9-TUMOR_peak_26366 chr2 26785263 26785496 + 7.14433 NA promoter-TSS (NM_001105519) promoter-TSS (NM_001105519) -102 NM_001105519 339778 Hs.407083 NM_001105519 ENSG00000173557 C2orf70 - chromosome 2 open reading frame 70 protein-coding 13-PTNLD9-TUMOR_peak_14652 chr13 42031425 42031781 + 7.14433 NA promoter-TSS (NM_014059) promoter-TSS (NM_014059) 61 NM_014059 28984 Hs.507866 NM_014059 HPRD:17970 RGCC C13orf15|RGC-32|RGC32|bA157L14.2 regulator of cell cycle protein-coding 13-PTNLD9-TUMOR_peak_9355 chr11 27031120 27031252 + 7.14433 NA Intergenic Intergenic 15558 NM_203371 387758 Hs.712718 NM_203371 HPRD:17366 FIBIN - fin bud initiation factor homolog (zebrafish) protein-coding 13-PTNLD9-TUMOR_peak_3901 chr1 155978501 155978658 + 7.14433 NA TTS (NM_003145) TTS (NM_003145) 12179 NM_003145 6746 Hs.74564 NM_003145 HPRD:02923 SSR2 TLAP|TRAP-BETA|TRAPB signal sequence receptor, beta (translocon-associated protein beta) protein-coding 13-PTNLD9-TUMOR_peak_42409 chr5 141603323 141603532 + 7.14433 NA Intergenic AluJb|SINE|Alu 100555 NM_001293289 81848 Hs.323308 NM_030964 HPRD:10466 SPRY4 HH17 sprouty homolog 4 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_33586 chr3 4813944 4814068 + 7.14433 NA intron (NM_001168272, intron 45 of 60) intron (NM_001168272, intron 45 of 60) -20732 NR_004428 100126791 Hs.663059 NR_004428 ENSG00000235947 EGOT EGO|NCRNA00190 eosinophil granule ontogeny transcript (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_8917 chr11 6384439 6384541 + 7.14433 NA Intergenic Intergenic -27154 NM_001007593 6609 Hs.498173 NM_000543 HPRD:06353 SMPD1 ASM|ASMASE|NPD sphingomyelin phosphodiesterase 1, acid lysosomal protein-coding 13-PTNLD9-TUMOR_peak_18494 chr16 10823641 10823796 + 7.14433 NA Intergenic Intergenic -13925 NM_001278506 4682 Hs.81469 NM_002484 HPRD:02611 NUBP1 NBP|NBP1|NBP35 nucleotide binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_17941 chr15 89560668 89560923 + 7.14433 NA Intergenic Intergenic -70586 NM_007011 11057 Hs.122337 NM_007011 HPRD:09791 ABHD2 HS1-2|LABH2|PHPS1-2 abhydrolase domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_56155 chrX 74408333 74408432 + 7.14433 NA Intergenic L1PA5|LINE|L1 -32207 NM_001271699 22 Hs.370480 NM_004299 HPRD:02137 ABCB7 ABC7|ASAT|Atm1p|EST140535 ATP-binding cassette, sub-family B (MDR/TAP), member 7 protein-coding 13-PTNLD9-TUMOR_peak_12089 chr12 8831561 8831686 + 7.14433 NA Intergenic Intergenic -2650 NR_123740 57494 Hs.504670 NM_020734 HPRD:13844 RIMKLB FAM80B|NAAGS|NAAGS-I ribosomal modification protein rimK-like family member B protein-coding 13-PTNLD9-TUMOR_peak_12228 chr12 14818780 14819193 + 7.14409 NA intron (NM_004963, intron 10 of 26) LTR9|LTR|ERV1 30533 NM_004963 2984 Hs.524278 NM_004963 HPRD:07529 GUCY2C DIAR6|GUC2C|MECIL|MUCIL|STAR guanylate cyclase 2C (heat stable enterotoxin receptor) protein-coding 13-PTNLD9-TUMOR_peak_4512 chr1 177197785 177197985 + 7.14409 NA intron (NM_021165, intron 1 of 7) intron (NM_021165, intron 1 of 7) 57252 NM_021165 57795 Hs.495918 NM_021165 HPRD:13891 BRINP2 DBCCR1L2|FAM5B bone morphogenetic protein/retinoic acid inducible neural-specific 2 protein-coding 13-PTNLD9-TUMOR_peak_51698 chr8 119045214 119045366 + 7.14409 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 78768 NM_000127 2131 Hs.492618 NM_000127 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_47228 chr7 35043483 35043611 + 7.14409 NA intron (NM_015283, intron 6 of 21) MER76|LTR|ERVL 34106 NM_015283 23333 Hs.408623 NM_015283 ENSG00000173852 DPY19L1 - dpy-19-like 1 (C. elegans) protein-coding 13-PTNLD9-TUMOR_peak_9920 chr11 58668406 58668500 + 7.14409 NA Intergenic Intergenic -26649 NM_001220494 92292 Hs.38085 NM_080661 HPRD:14447 GLYATL1 GATF-C|GNAT glycine-N-acyltransferase-like 1 protein-coding 13-PTNLD9-TUMOR_peak_15055 chr13 105300718 105300888 + 7.14409 NA Intergenic Intergenic -817413 NM_001161814 267012 Hs.381382 NM_172370 HPRD:07591 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 13-PTNLD9-TUMOR_peak_5057 chr1 203069791 203069984 + 7.14409 NA Intergenic Intergenic -14721 NM_002479 4656 Hs.2830 NM_002479 HPRD:01167 MYOG MYF4|bHLHc3|myf-4 myogenin (myogenic factor 4) protein-coding 13-PTNLD9-TUMOR_peak_38 chr1 805190 805349 + 7.14409 NA intron (NR_027055, intron 2 of 2) CpG 6913 NR_027055 284593 Hs.449006 NR_027055 ENSG00000230368 FAM41C - family with sequence similarity 41, member C ncRNA 13-PTNLD9-TUMOR_peak_28948 chr2 164515856 164515997 + 7.14409 NA intron (NM_018086, intron 2 of 2) intron (NM_018086, intron 2 of 2) 76587 NM_018086 55137 Hs.593650 NM_018086 FIGN - fidgetin protein-coding 13-PTNLD9-TUMOR_peak_44618 chr6 32498019 32498209 + 7.14409 NA promoter-TSS (NM_002125) promoter-TSS (NM_002125) -108 NM_002125 3127 Hs.485130 NM_002125 HPRD:09209 HLA-DRB5 HLA-DRB major histocompatibility complex, class II, DR beta 5 protein-coding 13-PTNLD9-TUMOR_peak_40831 chr5 50678909 50679300 + 7.14409 NA promoter-TSS (NR_046243) promoter-TSS (NR_046243) 62 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 13-PTNLD9-TUMOR_peak_50654 chr8 38431699 38431882 + 7.14409 NA Intergenic Intergenic 26985 NR_003129 286140 Hs.512071 NR_003129 RNF5P1 - ring finger protein 5, E3 ubiquitin protein ligase pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_39390 chr4 138881967 138882061 + 7.14409 NA Intergenic Intergenic -128154 NR_038380 641364 Hs.570846 NR_038380 ENSG00000250033 SLC7A11-AS1 - SLC7A11 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_41784 chr5 113785709 113785811 + 7.14409 NA intron (NR_103458, intron 1 of 6) intron (NR_103458, intron 1 of 6) 16533 NR_103458 3781 Hs.98280 NM_021614 HPRD:09323 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2 protein-coding 13-PTNLD9-TUMOR_peak_12925 chr12 54623532 54623681 + 7.14409 NA Intergenic Intergenic 1654 NR_039851 100616400 NR_039851 miRBase:MI0017335 MIR3198-2 - microRNA 3198-2 ncRNA 13-PTNLD9-TUMOR_peak_35591 chr3 123361288 123361456 + 7.14409 NA intron (NM_053025, intron 27 of 33) intron (NM_053025, intron 27 of 33) -21842 NM_053032 4638 Hs.477375 NM_005965 HPRD:02952 MYLK AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK myosin light chain kinase protein-coding 13-PTNLD9-TUMOR_peak_19737 chr16 72821428 72821546 + 7.14409 NA exon (NM_006885, exon 10 of 10) exon (NM_006885, exon 10 of 10) 260787 NM_006885 463 Hs.598297 NM_006885 HPRD:00075 ZFHX3 ATBF1|ATBT|ZNF927 zinc finger homeobox 3 protein-coding 13-PTNLD9-TUMOR_peak_33567 chr3 4004977 4005188 + 7.14409 NA Intergenic L1HS|LINE|L1 163961 NM_020873 57633 Hs.163244 NM_020873 HPRD:14320 LRRN1 FIGLER3|NLRR-1 leucine rich repeat neuronal 1 protein-coding 13-PTNLD9-TUMOR_peak_27165 chr2 69056460 69056610 + 7.14409 NA Intergenic Intergenic 42114 NM_014482 27302 Hs.158317 NM_014482 HPRD:09788 BMP10 - bone morphogenetic protein 10 protein-coding 13-PTNLD9-TUMOR_peak_42342 chr5 140345905 140346304 + 7.14409 NA promoter-TSS (NM_031883) promoter-TSS (NM_031883) -248 NM_031883 56134 Hs.199343 NM_018899 HPRD:07331 PCDHAC2 PCDH-ALPHA-C2 protocadherin alpha subfamily C, 2 protein-coding 13-PTNLD9-TUMOR_peak_279 chr1 8378110 8378259 + 7.14409 NA promoter-TSS (NM_001080397) promoter-TSS (NM_001080397) 39 NM_001080397 50651 Hs.463036 NM_001080397 ENSG00000162426 SLC45A1 DNB5 solute carrier family 45, member 1 protein-coding 13-PTNLD9-TUMOR_peak_6191 chr1 247521055 247521272 + 7.14409 NA Intergenic HERVP71A-int|LTR|ERV1 -26118 NM_032752 84838 Hs.654803 NM_032752 HPRD:15805 ZNF496 NIZP1|ZFP496|ZKSCAN17|ZSCAN49 zinc finger protein 496 protein-coding 13-PTNLD9-TUMOR_peak_11151 chr11 108942745 108942904 + 7.14409 NA Intergenic MSTA|LTR|ERVL-MaLR -350022 NM_207645 399947 Hs.172982 NM_207645 HPRD:14218 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 13-PTNLD9-TUMOR_peak_49158 chr7 132157347 132157452 + 7.14409 NA intron (NM_001105543, intron 3 of 3) intron (NM_001105543, intron 3 of 3) 103924 NM_020911 91584 Hs.511454 NM_020911 HPRD:10901 PLXNA4 FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003 plexin A4 protein-coding 13-PTNLD9-TUMOR_peak_42212 chr5 137151424 137151530 + 7.14409 NA Intergenic Intergenic 14595 NR_002713 4888 Hs.643466 NR_002713 ENSG00000226306 NPY6R NPY1RL|NPY6RP|PP2|Y2B neuropeptide Y receptor Y6 (pseudogene) pseudo 13-PTNLD9-TUMOR_peak_13971 chr12 117846221 117846408 + 7.14409 NA Intergenic Intergenic -46707 NM_001204218 4842 Hs.654410 NM_000620 HPRD:01226 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 (neuronal) protein-coding 13-PTNLD9-TUMOR_peak_54467 chr9 115249299 115249612 + 7.14409 NA intron (NM_001287036, intron 1 of 4) CpG 207 NM_001287038 158405 Hs.656619 NM_133465 HPRD:11173 KIAA1958 - KIAA1958 protein-coding 13-PTNLD9-TUMOR_peak_5829 chr1 231820699 231820905 + 7.14409 NA intron (NM_001164556, intron 1 of 4) intron (NM_001164556, intron 1 of 4) 58241 NM_001164541 27185 Hs.13318 NM_018662 HPRD:05553 DISC1 C1orf136|SCZD9 disrupted in schizophrenia 1 protein-coding 13-PTNLD9-TUMOR_peak_37443 chr3 196540898 196541005 + 7.14409 NA intron (NM_002577, intron 10 of 14) MIRb|SINE|MIR -53776 NM_152699 205564 Hs.240770 NM_152699 HPRD:10222 SENP5 - SUMO1/sentrin specific peptidase 5 protein-coding 13-PTNLD9-TUMOR_peak_29404 chr2 192759548 192759740 + 7.14409 NA Intergenic Intergenic -47638 NM_004657 8436 Hs.26530 NM_004657 HPRD:09470 SDPR CAVIN2|PS-p68|SDR|cavin-2 serum deprivation response protein-coding 13-PTNLD9-TUMOR_peak_925 chr1 31261499 31261647 + 7.14409 NA Intergenic L2c|LINE|L2 -30890 NM_006762 7805 Hs.371021 NM_006762 HPRD:03280 LAPTM5 CLAST6 lysosomal protein transmembrane 5 protein-coding 13-PTNLD9-TUMOR_peak_20654 chr17 20107073 20107237 + 7.14409 NA intron (NM_001033554, intron 1 of 5) MLT1L|LTR|ERVL-MaLR 47848 NM_001033555 92521 Hs.431045 NM_152904 HPRD:12301 SPECC1 CYTSB|HCMOGT-1|HCMOGT1|NSP sperm antigen with calponin homology and coiled-coil domains 1 protein-coding 13-PTNLD9-TUMOR_peak_17871 chr15 85197439 85197595 + 7.14266 NA promoter-TSS (NM_032856) promoter-TSS (NM_032856) 4 NM_032856 84942 Hs.745027 NM_032856 HPRD:08608 WDR73 - WD repeat domain 73 protein-coding 13-PTNLD9-TUMOR_peak_44808 chr6 36355512 36355622 + 7.14266 NA promoter-TSS (NM_001207041) promoter-TSS (NM_001207041) 1 NM_001207038 51513 Hs.272398 NM_016135 HPRD:16095 ETV7 TEL-2|TEL2|TELB ets variant 7 protein-coding 13-PTNLD9-TUMOR_peak_22760 chr18 20513629 20513750 + 7.14266 NA promoter-TSS (NM_203292) promoter-TSS (NM_203292) -150 NM_203292 5932 Hs.546282 NM_002894 HPRD:04990 RBBP8 COM1|CTIP|JWDS|RIM|SAE2|SCKL2 retinoblastoma binding protein 8 protein-coding 13-PTNLD9-TUMOR_peak_41940 chr5 126376535 126376716 + 7.14266 NA Intergenic Intergenic -10125 NM_178450 115123 Hs.132441 NM_178450 HPRD:14362 MARCH3 MARCH-III|RNF173 membrane-associated ring finger (C3HC4) 3, E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_1304 chr1 40781031 40781179 + 7.14266 NA intron (NM_001852, intron 2 of 31) CpG 1834 NM_001852 1298 Hs.418012 NM_001852 HPRD:00373 COL9A2 DJ39G22.4|EDM2|MED|STL5 collagen, type IX, alpha 2 protein-coding 13-PTNLD9-TUMOR_peak_54538 chr9 117274790 117274884 + 7.14266 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -7101 NM_015404 25861 Hs.93836 NM_015404 HPRD:09718 DFNB31 CIP98|PDZD7B|USH2D|WHRN|WI deafness, autosomal recessive 31 protein-coding 13-PTNLD9-TUMOR_peak_48033 chr7 75923688 75923867 + 7.13916 NA Intergenic MIR3|SINE|MIR -8098 NM_001540 3315 Hs.520973 NM_001540 HPRD:09076 HSPB1 CMT2F|HEL-S-102|HMN2B|HS.76067|HSP27|HSP28|Hsp25|SRP27 heat shock 27kDa protein 1 protein-coding 13-PTNLD9-TUMOR_peak_3534 chr1 149981663 149981816 + 7.13468 NA intron (NM_020205, intron 1 of 11) intron (NM_020205, intron 1 of 11) 947 NM_020205 56957 Hs.98322 NM_020205 OTUD7B CEZANNE|ZA20D1 OTU deubiquitinase 7B protein-coding 13-PTNLD9-TUMOR_peak_48131 chr7 79157839 79157985 + 7.13468 NA Intergenic LTR52|LTR|ERVL 74636 NR_038343 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 13-PTNLD9-TUMOR_peak_35152 chr3 98241095 98241203 + 7.13468 NA intron (NM_019895, intron 1 of 5) intron (NM_019895, intron 1 of 5) 761 NM_001040199 56650 Hs.531371 NM_019895 HPRD:12822 CLDND1 C3orf4|GENX-3745 claudin domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_40097 chr4 190942198 190942422 + 7.12140 NA Intergenic LSAU|Satellite|Satellite 6102 NM_001005217 448831 Hs.626907 NM_001005217 HPRD:16418 FRG2 FRG2A FSHD region gene 2 protein-coding 13-PTNLD9-TUMOR_peak_18352 chr16 4324047 4324162 + 7.12140 NA Intergenic Intergenic -1103 NM_003223 7023 Hs.513305 NM_003223 HPRD:11795 TFAP4 AP-4|bHLHc41 transcription factor AP-4 (activating enhancer binding protein 4) protein-coding 13-PTNLD9-TUMOR_peak_26969 chr2 55843746 55843921 + 7.12140 NA intron (NM_001282850, intron 1 of 15) intron (NM_001282850, intron 1 of 15) 1027 NM_001122964 57223 Hs.516182 NM_020463 HPRD:13854 SMEK2 FLFL2|PP4R3B|PSY2|smk1 SMEK homolog 2, suppressor of mek1 (Dictyostelium) protein-coding 13-PTNLD9-TUMOR_peak_45013 chr6 42068280 42068434 + 7.11966 NA TTS (NM_001164446) TTS (NM_001164446) 42358 NM_001164446 647024 Hs.444277 NM_001164446 ENSG00000188112 C6orf132 bA7K24.2 chromosome 6 open reading frame 132 protein-coding 13-PTNLD9-TUMOR_peak_7642 chr10 72165340 72165453 + 7.11966 NA intron (NM_004096, intron 1 of 2) intron (NM_004096, intron 1 of 2) 1535 NM_004096 1979 Hs.621200 NM_004096 HPRD:03747 EIF4EBP2 4EBP2|PHASII eukaryotic translation initiation factor 4E binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_33528 chr22 51195541 51195690 + 7.11047 NA non-coding (NR_026981, exon 1 of 4) non-coding (NR_026981, exon 1 of 4) 101 NR_026981 284942 Hs.406135 NM_203302 RPL23AP82 RPL23A_43_1761 ribosomal protein L23a pseudogene 82 pseudo 13-PTNLD9-TUMOR_peak_8764 chr11 910815 911116 + 7.11047 NA promoter-TSS (NM_001142676) promoter-TSS (NM_001142676) -91 NM_001142674 66005 Hs.144468 NM_023947 HPRD:14550 CHID1 SI-CLP|SICLP chitinase domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_29147 chr2 175351355 175351514 + 7.11047 NA intron (NM_001033045, intron 1 of 16) CpG 382 NM_001267050 151556 Hs.516604 NM_152529 HPRD:17066 GPR155 DEP.7|DEPDC3|PGR22 G protein-coupled receptor 155 protein-coding 13-PTNLD9-TUMOR_peak_21947 chr17 72764444 72764555 + 7.11047 NA intron (NM_004252, intron 5 of 5) intron (NM_004252, intron 5 of 5) 7971 NM_015654 26151 Hs.144058 NM_015654 HPRD:13259 NAT9 EBSP, hNATL N-acetyltransferase 9 (GCN5-related, putative) protein-coding 13-PTNLD9-TUMOR_peak_19467 chr16 58039234 58039342 + 7.11047 NA intron (NM_001204911, intron 2 of 3) LTR13|LTR|ERVK 4011 NM_001195302 79650 Hs.408702 NM_024598 HPRD:07815 USB1 C16orf57|HVSL1|Mpn1|PN|hUsb1 U6 snRNA biogenesis 1 protein-coding 13-PTNLD9-TUMOR_peak_1406 chr1 42675220 42675318 + 7.11047 NA intron (NM_014947, intron 5 of 12) L1PBb|LINE|L1 -44874 NM_033553 2980 Hs.778 NM_033553 HPRD:00767 GUCA2A GCAP-I|GUCA2|STARA guanylate cyclase activator 2A (guanylin) protein-coding 13-PTNLD9-TUMOR_peak_10010 chr11 61456483 61456641 + 7.11047 NA intron (NM_006133, intron 1 of 19) intron (NM_006133, intron 1 of 19) 8657 NM_006133 747 Hs.241564 NM_006133 HPRD:07092 DAGLA C11orf11|DAGL(ALPHA)|DAGLALPHA|NSDDR diacylglycerol lipase, alpha protein-coding 13-PTNLD9-TUMOR_peak_13960 chr12 117348697 117348989 + 7.10945 NA promoter-TSS (NM_153348) promoter-TSS (NM_153348) 82 NM_012174 26259 Hs.624537 NM_012174 HPRD:16427 FBXW8 FBW6|FBW8|FBX29|FBXO29|FBXW6 F-box and WD repeat domain containing 8 protein-coding 13-PTNLD9-TUMOR_peak_2822 chr1 110955220 110955339 + 7.10945 NA intron (NR_102697, intron 2 of 2) intron (NR_102697, intron 2 of 2) -4733 NM_006402 10542 Hs.439815 NM_006402 HPRD:09773 LAMTOR5 HBXIP|XIP late endosomal/lysosomal adaptor, MAPK and MTOR activator 5 protein-coding 13-PTNLD9-TUMOR_peak_17839 chr15 83613676 83613880 + 7.10945 NA intron (NM_199330, intron 1 of 8) intron (NM_199330, intron 1 of 8) 7698 NM_004839 9455 Hs.578443 NM_004839 HPRD:07269 HOMER2 ACPD|CPD|HOMER-2|VESL-2 homer homolog 2 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_37973 chr4 10047177 10047395 + 7.10945 NA Intergenic Intergenic -5414 NM_001001290 56606 Hs.656895 NM_020041 HPRD:05848 SLC2A9 GLUT9|GLUTX|UAQTL2|URATv1 solute carrier family 2 (facilitated glucose transporter), member 9 protein-coding 13-PTNLD9-TUMOR_peak_28537 chr2 134601198 134601348 + 7.10945 NA Intergenic Intergenic -275242 NM_207363 344148 Hs.537329 NM_207363 HPRD:16936 NCKAP5 ERIH1|ERIH2|NAP5 NCK-associated protein 5 protein-coding 13-PTNLD9-TUMOR_peak_22958 chr18 35025420 35025567 + 7.10945 NA intron (NM_001025087, intron 2 of 12) intron (NM_001025087, intron 2 of 12) 120507 NM_001025089 56853 Hs.435976 NM_020180 HPRD:12534 CELF4 BRUNOL-4|BRUNOL4 CUGBP, Elav-like family member 4 protein-coding 13-PTNLD9-TUMOR_peak_898 chr1 30112157 30112252 + 7.10945 NA Intergenic Intergenic 398255 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LOC101929406 - uncharacterized LOC101929406 ncRNA 13-PTNLD9-TUMOR_peak_33096 chr22 30721209 30721398 + 7.10945 NA intron (NM_001204240, intron 1 of 8) intron (NM_001204240, intron 1 of 8) 1652 NM_001204240 83874 Hs.655273 NM_031937 HPRD:18162 TBC1D10A EPI64|TBC1D10|dJ130H16.1|dJ130H16.2 TBC1 domain family, member 10A protein-coding 13-PTNLD9-TUMOR_peak_22050 chr17 74128794 74128965 + 7.10945 NA Intergenic Intergenic -7758 NR_040017 100507218 Hs.654866 NR_040017 ENSG00000267128 RNF157-AS1 - RNF157 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_27920 chr2 106071567 106071711 + 7.10945 NA Intergenic Intergenic -16409 NM_201557 2274 Hs.443687 NM_001450 HPRD:04026 FHL2 AAG11|DRAL|FHL-2|SLIM-3|SLIM3 four and a half LIM domains 2 protein-coding 13-PTNLD9-TUMOR_peak_22736 chr18 19928636 19929038 + 7.10945 NA Intergenic CpG 69041 NM_172241 64693 Hs.406709 NM_022663 HPRD:16395 CTAGE1 CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2 cutaneous T-cell lymphoma-associated antigen 1 protein-coding 13-PTNLD9-TUMOR_peak_35423 chr3 113666879 113667345 + 7.10606 NA intron (NM_173570, intron 1 of 5) CpG 364 NM_173570 254887 Hs.21902 NM_173570 HPRD:15717 ZDHHC23 NIDD zinc finger, DHHC-type containing 23 protein-coding 13-PTNLD9-TUMOR_peak_35778 chr3 127408998 127409222 + 7.10606 NA 3' UTR (NM_007283, exon 8 of 8) 3' UTR (NM_007283, exon 8 of 8) 17329 NR_033429 80325 Hs.107812 NM_032548 HPRD:10513 ABTB1 BPOZ|BTB3|BTBD21|EF1ABP ankyrin repeat and BTB (POZ) domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_8175 chr10 102761229 102761373 + 7.10606 NA intron (NM_032429, intron 1 of 4) intron (NM_032429, intron 1 of 4) 4437 NM_032429 84445 Hs.523221 NM_032429 HPRD:14341 LZTS2 LAPSER1 leucine zipper, putative tumor suppressor 2 protein-coding 13-PTNLD9-TUMOR_peak_8682 chr10 135121360 135121454 + 7.10606 NA intron (NR_046330, intron 1 of 17) Tigger3c|DNA|TcMar-Tigger -1016 NM_145806 118472 Hs.422113 NM_145806 HPRD:15812 ZNF511 - zinc finger protein 511 protein-coding 13-PTNLD9-TUMOR_peak_36361 chr3 149616660 149616811 + 7.10460 NA intron (NM_183381, intron 5 of 9) L2a|LINE|L2 72006 NM_002628 5217 Hs.91747 NM_002628 HPRD:01451 PFN2 D3S1319E|PFL profilin 2 protein-coding 13-PTNLD9-TUMOR_peak_13057 chr12 58269686 58269820 + 7.10460 NA Intergenic L2a|LINE|L2 -29006 NM_005730 10106 Hs.524530 NM_005730 HPRD:12281 CTDSP2 OS4|PSR2|SCP2 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2 protein-coding 13-PTNLD9-TUMOR_peak_40685 chr5 39780096 39780222 + 7.10460 NA Intergenic L1ME1|LINE|L1 259626 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LOC101926940 - uncharacterized LOC101926940 ncRNA 13-PTNLD9-TUMOR_peak_23678 chr19 2889032 2889129 + 7.10460 NA Intergenic CpG -11816 NM_173480 126295 Hs.591378 NM_173480 HPRD:14034 ZNF57 ZNF424 zinc finger protein 57 protein-coding 13-PTNLD9-TUMOR_peak_27984 chr2 110421477 110421577 + 7.10460 NA Intergenic Intergenic 49616 NM_023016 65124 Hs.355455 NM_023016 HPRD:08643 SOWAHC ANKRD57|C2orf26 sosondowah ankyrin repeat domain family member C protein-coding 13-PTNLD9-TUMOR_peak_54219 chr9 102195936 102196067 + 7.10460 NA Intergenic Intergenic -58462 NR_102270 100996569 Hs.745280 NR_102270 ENSG00000271086 NAMA - non-protein coding RNA, associated with MAP kinase pathway and growth arrest ncRNA 13-PTNLD9-TUMOR_peak_52630 chr9 2281583 2281683 + 7.10460 NA Intergenic LTR84b|LTR|ERVL 123177 NM_001289400 6595 Hs.298990 NM_003070 HPRD:02483 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 13-PTNLD9-TUMOR_peak_23586 chr19 893146 893261 + 7.10460 NA promoter-TSS (NM_005481) promoter-TSS (NM_005481) 15 NM_005481 10025 Hs.365207 NM_005481 HPRD:06816 MED16 DRIP92|THRAP5|TRAP95 mediator complex subunit 16 protein-coding 13-PTNLD9-TUMOR_peak_8511 chr10 124100719 124100920 + 7.10460 NA Intergenic Intergenic -33275 NM_001001974 59338 Hs.643512 NM_021622 HPRD:09686 PLEKHA1 TAPP1 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1 protein-coding 13-PTNLD9-TUMOR_peak_32131 chr21 33269682 33269804 + 7.10460 NA intron (NM_014586, intron 1 of 10) MLT1C|LTR|ERVL-MaLR 24115 NM_014586 30811 Hs.109437 NM_014586 HPRD:09410 HUNK - hormonally up-regulated Neu-associated kinase protein-coding 13-PTNLD9-TUMOR_peak_7956 chr10 89264396 89264703 + 7.10460 NA TTS (NR_039825) TTS (NR_039825) 326 NM_004897 9562 Hs.121260 NM_004897 HPRD:05652 MINPP1 HIPER1|MINPP2|MIPP multiple inositol-polyphosphate phosphatase 1 protein-coding 13-PTNLD9-TUMOR_peak_9183 chr11 15815001 15815117 + 7.10460 NA Intergenic L2|LINE|L2 149628 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 13-PTNLD9-TUMOR_peak_13835 chr12 110950368 110950473 + 7.10460 NA intron (NM_001286533, intron 5 of 11) intron (NM_001286533, intron 5 of 11) 10272 NM_001286534 144715 Hs.97794 NM_152442 ENSG00000151164 RAD9B - RAD9 homolog B (S. pombe) protein-coding 13-PTNLD9-TUMOR_peak_22466 chr18 3412605 3412760 + 7.10460 NA promoter-TSS (NM_001278686) promoter-TSS (NM_001278686) -172 NM_001278686 7050 Hs.373550 NM_003244 HPRD:04023 TGIF1 HPE4|TGIF TGFB-induced factor homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_35950 chr3 132151599 132151709 + 7.10460 NA intron (NM_015268, intron 1 of 55) Charlie10|DNA|hAT-Charlie 15101 NM_015268 23317 Hs.12707 NM_015268 HPRD:10915 DNAJC13 RME8 DnaJ (Hsp40) homolog, subfamily C, member 13 protein-coding 13-PTNLD9-TUMOR_peak_23082 chr18 44939760 44939940 + 7.10460 NA Intergenic Intergenic -164296 NM_001278063 652991 Hs.585834 NM_001037802 ENSG00000215474 SKOR2 CORL2|FUSSEL18 SKI family transcriptional corepressor 2 protein-coding 13-PTNLD9-TUMOR_peak_4248 chr1 165204807 165204901 + 7.10460 NA intron (NM_177398, intron 4 of 8) CpG 120624 NM_001174069 4009 Hs.667312 NM_177398 HPRD:02623 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1, alpha protein-coding 13-PTNLD9-TUMOR_peak_37853 chr4 7950639 7950849 + 7.10460 NA Intergenic L2c|LINE|L2 -9091 NM_001134647 60312 Hs.529369 NM_021638 HPRD:09747 AFAP1 AFAP|AFAP-110|AFAP110 actin filament associated protein 1 protein-coding 13-PTNLD9-TUMOR_peak_37619 chr4 2443511 2443617 + 7.10460 NA intron (NM_001193282, intron 4 of 15) intron (NM_001193282, intron 4 of 15) 22892 NM_001193282 402160 Hs.443116 NM_001193282 CFAP99 - cilia and flagella associated protein 99 protein-coding 13-PTNLD9-TUMOR_peak_33884 chr3 14321958 14322102 + 7.10460 NA Intergenic MIR|SINE|MIR 72038 NR_110135 101927565 Hs.306905 NR_110135 ENSG00000251576 LINC01267 - long intergenic non-protein coding RNA 1267 ncRNA 13-PTNLD9-TUMOR_peak_2057 chr1 64312147 64312263 + 7.10460 NA intron (NM_001083592, intron 1 of 6) intron (NM_001083592, intron 1 of 6) 72515 NM_001083592 4919 Hs.128753 NM_005012 HPRD:03821 ROR1 NTRKR1|dJ537F10.1 receptor tyrosine kinase-like orphan receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_27426 chr2 85662488 85662603 + 7.09980 NA exon (NM_198482, exon 2 of 5) exon (NM_198482, exon 2 of 5) 627 NM_198482 284948 Hs.209542 NM_198482 HPRD:14156 SH2D6 - SH2 domain containing 6 protein-coding 13-PTNLD9-TUMOR_peak_25496 chr19 51529134 51529550 + 7.09802 NA intron (NM_006853, intron 1 of 5) intron (NM_006853, intron 1 of 5) 530 NM_001136032 11012 Hs.57771 NM_006853 HPRD:05114 KLK11 PRSS20|TLSP kallikrein-related peptidase 11 protein-coding 13-PTNLD9-TUMOR_peak_54483 chr9 115849359 115849470 + 7.09603 NA Intergenic CpG 24543 NR_024376 100128385 Hs.99052 NR_024376 ENSG00000225684 FAM225B C9orf110|LINC00256B|NCRNA00256B family with sequence similarity 225, member B (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_27621 chr2 91808573 91808703 + 7.09453 NA Intergenic MLT1F2|LTR|ERVL-MaLR 39337 NR_027238 654342 Hs.469287 NR_027238 ENSG00000143429 LOC654342 - lymphocyte-specific protein 1 pseudogene pseudo 13-PTNLD9-TUMOR_peak_13305 chr12 70595034 70595427 + 7.09414 NA Intergenic SVA_E|Other|Other -41544 NM_014515 4848 Hs.133350 NM_014515 HPRD:05367 CNOT2 CDC36|NOT2|NOT2H CCR4-NOT transcription complex, subunit 2 protein-coding 13-PTNLD9-TUMOR_peak_45526 chr6 75918730 75918856 + 7.09414 NA Intergenic Intergenic -3170 NM_004370 1303 Hs.101302 NM_004370 HPRD:00377 COL12A1 BA209D8.1|COL12A1L|DJ234P15.1 collagen, type XII, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_12833 chr12 52764160 52764276 + 7.09414 NA Intergenic Intergenic -2909 NM_002283 3891 Hs.182507 NM_002283 HPRD:04139 KRT85 ECTD4|HB5|Hb-5|K85|KRTHB5|hHb5 keratin 85 protein-coding 13-PTNLD9-TUMOR_peak_51124 chr8 70747149 70747372 + 7.09414 NA promoter-TSS (NM_030958) promoter-TSS (NM_030958) 39 NM_030958 81796 Hs.152460 NM_030958 HPRD:15399 SLCO5A1 OATP-J|OATP-RP4|OATP5A1|OATPRP4|SLC21A15 solute carrier organic anion transporter family, member 5A1 protein-coding 13-PTNLD9-TUMOR_peak_1755 chr1 51700858 51700985 + 7.09414 NA Intergenic Intergenic -1024 NM_014372 26994 Hs.309641 NM_014372 HPRD:09955 RNF11 SID1669 ring finger protein 11 protein-coding 13-PTNLD9-TUMOR_peak_36013 chr3 134088151 134088259 + 7.09337 NA intron (NM_016201, intron 2 of 9) intron (NM_016201, intron 2 of 9) -1501 NR_106885 102466744 NR_106885 MIR6827 hsa-mir-6827 microRNA 6827 ncRNA 13-PTNLD9-TUMOR_peak_25271 chr19 48423538 48423734 + 7.09040 NA Intergenic AluYa5|SINE|Alu 1950 NR_004435 100126798 Hs.579631 NR_004435 SNAR-A1 SNAR-A53113498 small ILF3/NF90-associated RNA A1 snRNA 13-PTNLD9-TUMOR_peak_8424 chr10 119302089 119302244 + 7.07932 NA 5' UTR (NM_004098, exon 1 of 3) 5' UTR (NM_004098, exon 1 of 3) 210 NM_004098 2018 Hs.202095 NM_004098 HPRD:02495 EMX2 - empty spiracles homeobox 2 protein-coding 13-PTNLD9-TUMOR_peak_36086 chr3 138048040 138048209 + 7.07932 NA intron (NM_178130, intron 2 of 11) intron (NM_178130, intron 2 of 11) 604 NM_178130 347736 Hs.660992 NM_178130 HPRD:18250 NME9 NM23-H9|TXL-2|TXL2|TXNDC6 NME/NM23 family member 9 protein-coding 13-PTNLD9-TUMOR_peak_4335 chr1 168361417 168361551 + 7.07932 NA Intergenic L2b|LINE|L2 16722 NR_030284 693142 NR_030284 miRBase:MI0003563 MIR557 MIRN557|hsa-mir-557 microRNA 557 ncRNA 13-PTNLD9-TUMOR_peak_37503 chr3 197807599 197808061 + 7.07763 NA promoter-TSS (NR_003291) promoter-TSS (NR_003291) -288 NR_003291 348840 Hs.512227 NM_182631 HPRD:14181 ANKRD18DP - ankyrin repeat domain 18D, pseudogene pseudo 13-PTNLD9-TUMOR_peak_24267 chr19 16291558 16291724 + 7.07763 NA Intergenic Kanga1b|DNA|TcMar-Tc2 -4594 NM_014077 26017 Hs.631614 NM_014077 HPRD:13305 FAM32A OTAG-12|OTAG12 family with sequence similarity 32, member A protein-coding 13-PTNLD9-TUMOR_peak_40746 chr5 43428126 43428333 + 7.07763 NA Intergenic AluSx1|SINE|Alu -15741 NM_148672 56477 Hs.656904 NM_019846 CCL28 CCK1|MEC|SCYA28 chemokine (C-C motif) ligand 28 protein-coding 13-PTNLD9-TUMOR_peak_30564 chr20 19971626 19971755 + 7.07763 NA intron (NM_001242581, intron 9 of 11) intron (NM_001242581, intron 9 of 11) -26244 NM_181528 51126 Hs.368783 NM_016100 HPRD:07136 NAA20 NAT3|NAT3P|NAT5|NAT5P|dJ1002M8.1 N(alpha)-acetyltransferase 20, NatB catalytic subunit protein-coding 13-PTNLD9-TUMOR_peak_31188 chr20 44035836 44036185 + 7.07763 NA promoter-TSS (NM_001048226) promoter-TSS (NM_001048226) -619 NM_001048226 55861 Hs.730643 NM_018478 HPRD:12763 DBNDD2 C20orf35|CK1BP|HSMNP1 dysbindin (dystrobrevin binding protein 1) domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_3449 chr1 148556686 148556815 + 7.07474 NA intron (NR_104217, intron 2 of 17) intron (NR_104217, intron 2 of 17) -1438 NM_001170755 284565 Hs.523572 NM_173638 HPRD:14710 NBPF15 AB14|AG3|NBPF16 neuroblastoma breakpoint family, member 15 protein-coding 13-PTNLD9-TUMOR_peak_38591 chr4 75409805 75409929 + 7.07472 NA Intergenic Intergenic -70724 NM_001657 374 Hs.270833 NM_001657 HPRD:00093 AREG AR|AREGB|CRDGF|SDGF amphiregulin protein-coding 13-PTNLD9-TUMOR_peak_55574 chrX 15693470 15693618 + 7.07472 NA intron (NR_026551, intron 1 of 4) CpG 505 NR_026551 340591 Hs.732244 NR_026551 ENSG00000186312 CA5BP1 CA5BL|CA5BP|PRO2325 carbonic anhydrase VB pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_31394 chr20 48598992 48599166 + 7.07472 NA promoter-TSS (NM_005985) promoter-TSS (NM_005985) -434 NM_005985 6615 Hs.48029 NM_005985 HPRD:05025 SNAI1 SLUGH2|SNA|SNAH|SNAIL|SNAIL1|dJ710H13.1 snail family zinc finger 1 protein-coding 13-PTNLD9-TUMOR_peak_11939 chr12 6181757 6181925 + 7.07472 NA intron (NM_000552, intron 8 of 51) intron (NM_000552, intron 8 of 51) 51995 NM_000552 7450 Hs.440848 NM_000552 HPRD:01906 VWF F8VWF|VWD von Willebrand factor protein-coding 13-PTNLD9-TUMOR_peak_16998 chr15 34330847 34330980 + 7.07472 NA intron (NM_020371, intron 1 of 5) CpG 390 NM_020371 57099 Hs.555966 NM_020371 HPRD:05588 AVEN PDCD12 apoptosis, caspase activation inhibitor protein-coding 13-PTNLD9-TUMOR_peak_29451 chr2 197664407 197664555 + 7.07472 NA promoter-TSS (NM_001206774) promoter-TSS (NM_001206774) 11 NM_001206774 9330 Hs.470996 NM_012086 HPRD:11997 GTF3C3 TFIIIC102|TFIIICgamma|TFiiiC2-102 general transcription factor IIIC, polypeptide 3, 102kDa protein-coding 13-PTNLD9-TUMOR_peak_5181 chr1 205116398 205116574 + 7.07472 NA 3' UTR (NM_015375, exon 13 of 13) 3' UTR (NM_015375, exon 13 of 13) -25336 NM_001193272 5929 Hs.519230 NM_005057 HPRD:02826 RBBP5 RBQ3|SWD1 retinoblastoma binding protein 5 protein-coding 13-PTNLD9-TUMOR_peak_20839 chr17 30772269 30772377 + 7.07472 NA intron (NM_001270482, intron 1 of 12) intron (NM_001270482, intron 1 of 12) 842 NM_001270482 5717 Hs.443379 NM_002815 HPRD:05119 PSMD11 Rpn6|S9|p44.5 proteasome (prosome, macropain) 26S subunit, non-ATPase, 11 protein-coding 13-PTNLD9-TUMOR_peak_39020 chr4 106913861 106914061 + 7.07472 NA Intergenic Intergenic 97364 NM_001184690 255743 Hs.518921 NM_198278 HPRD:14141 NPNT EGFL6L|POEM nephronectin protein-coding 13-PTNLD9-TUMOR_peak_21894 chr17 70335118 70335477 + 7.07472 NA Intergenic Intergenic 218136 NM_000346 6662 Hs.647409 NM_000346 HPRD:06427 SOX9 CMD1|CMPD1|SRA1 SRY (sex determining region Y)-box 9 protein-coding 13-PTNLD9-TUMOR_peak_22091 chr17 74868575 74868715 + 7.07472 NA promoter-TSS (NM_198955) promoter-TSS (NM_198955) -84 NM_198955 146664 Hs.144531 NM_144677 HPRD:14392 MGAT5B GnT-IX|GnT-VB mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B protein-coding 13-PTNLD9-TUMOR_peak_55028 chr9 138943936 138944187 + 7.07472 NA intron (NM_144653, intron 1 of 5) intron (NM_144653, intron 1 of 5) 43070 NM_144653 138151 Hs.112895 NM_144653 HPRD:09831 NACC2 BEND9|BTBD14|BTBD14A|BTBD31|NAC-2|RBB NACC family member 2, BEN and BTB (POZ) domain containing protein-coding 13-PTNLD9-TUMOR_peak_54341 chr9 110187434 110187782 + 7.07472 NA intron (NR_121581, intron 7 of 7) intron (NR_121581, intron 7 of 7) 41258 NR_121581 101928720 Hs.125496 NR_121581 LINC01509 - long intergenic non-protein coding RNA 1509 ncRNA 13-PTNLD9-TUMOR_peak_8176 chr10 102772708 102772889 + 7.07472 NA intron (NM_001195263, intron 11 of 16) intron (NM_001195263, intron 11 of 16) 15934 NM_032429 84445 Hs.523221 NM_032429 HPRD:14341 LZTS2 LAPSER1 leucine zipper, putative tumor suppressor 2 protein-coding 13-PTNLD9-TUMOR_peak_5487 chr1 222885451 222885579 + 7.07427 NA promoter-TSS (NM_144695) promoter-TSS (NM_144695) 349 NM_022831 64853 Hs.156625 NM_022831 HPRD:07798 AIDA C1orf80 axin interactor, dorsalization associated protein-coding 13-PTNLD9-TUMOR_peak_54010 chr9 95522629 95522739 + 7.07427 NA intron (NM_001003800, intron 1 of 6) intron (NM_001003800, intron 1 of 6) 4399 NM_015250 23299 Hs.436939 NM_015250 HPRD:09826 BICD2 SMALED2|bA526D8.1 bicaudal D homolog 2 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_12195 chr12 13251573 13251709 + 7.07427 NA intron (NM_001206842, intron 1 of 5) intron (NM_001206842, intron 1 of 5) -2901 NM_001206845 83445 Hs.240053 NM_031289 HPRD:11015 GSG1 - germ cell associated 1 protein-coding 13-PTNLD9-TUMOR_peak_23127 chr18 46149978 46150138 + 7.07427 NA intron (NM_014772, intron 2 of 11) intron (NM_014772, intron 2 of 11) -46913 NR_039897 100616366 NR_039897 MIR4743 - microRNA 4743 ncRNA 13-PTNLD9-TUMOR_peak_25812 chr19 58838900 58839025 + 7.07427 NA intron (NM_181846, intron 1 of 2) intron (NM_181846, intron 1 of 2) 577 NM_181846 342945 Hs.388162 NM_181846 HPRD:01315 ZSCAN22 HKR2|ZNF50 zinc finger and SCAN domain containing 22 protein-coding 13-PTNLD9-TUMOR_peak_35374 chr3 112110588 112110791 + 7.07427 NA Intergenic Intergenic 58773 NM_005944 4345 Hs.79015 NM_005944 ENSG00000091972 CD200 MOX1|MOX2|MRC|OX-2 CD200 molecule protein-coding 13-PTNLD9-TUMOR_peak_27616 chr2 91677539 91677640 + 7.07409 NA Intergenic Intergenic 170386 NR_027238 654342 Hs.469287 NR_027238 ENSG00000143429 LOC654342 - lymphocyte-specific protein 1 pseudogene pseudo 13-PTNLD9-TUMOR_peak_50878 chr8 48647778 48648005 + 7.06812 NA exon (NM_001282916, exon 19 of 19) exon (NM_001282916, exon 19 of 19) 2835 NM_005195 1052 Hs.440829 NM_005195 CEBPD C/EBP-delta|CELF|CRP3|NF-IL6-beta CCAAT/enhancer binding protein (C/EBP), delta protein-coding 13-PTNLD9-TUMOR_peak_395 chr1 10960224 10960549 + 7.06812 NA Intergenic Intergenic 81708 NM_001170754 148345 Hs.127026 NM_173507 HPRD:08780 C1orf127 - chromosome 1 open reading frame 127 protein-coding 13-PTNLD9-TUMOR_peak_23221 chr18 51675445 51675594 + 7.06528 NA Intergenic Intergenic 73263 NR_002970 677819 Hs.655869 NR_002970 SNORA37 ACA37 small nucleolar RNA, H/ACA box 37 snoRNA 13-PTNLD9-TUMOR_peak_28016 chr2 111025539 111025694 + 7.06528 NA Intergenic LTR13|LTR|ERVK -16814 NR_049830 100847033 NR_049830 miRBase:MI0019110 MIR4436B2 - microRNA 4436b-2 ncRNA 13-PTNLD9-TUMOR_peak_43243 chr5 177701104 177701353 + 7.06528 NA intron (NM_173465, intron 5 of 28) intron (NM_173465, intron 5 of 28) -41405 NR_103509 85007 Hs.248746 NM_153373 HPRD:18482 PHYKPL AGXT2L2|PHLU 5-phosphohydroxy-L-lysine phospho-lyase protein-coding 13-PTNLD9-TUMOR_peak_14522 chr13 30716578 30716863 + 7.06528 NA Intergenic Intergenic 164471 NM_001014380 84056 Hs.243596 NM_032116 HPRD:13753 KATNAL1 - katanin p60 subunit A-like 1 protein-coding 13-PTNLD9-TUMOR_peak_11009 chr11 96652204 96652406 + 7.06528 NA Intergenic Intergenic -412264 NR_047481 100874053 Hs.742044 NR_047481 JRKL-AS1 - JRKL antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_15016 chr13 101240927 101241175 + 7.06528 NA promoter-TSS (NM_001195087) promoter-TSS (NM_001195087) -5 NM_001195087 87769 Hs.350868 NM_033110 GGACT A2LD1 gamma-glutamylamine cyclotransferase protein-coding 13-PTNLD9-TUMOR_peak_51381 chr8 100796531 100796713 + 7.06528 NA exon (NM_017890, exon 43 of 62) exon (NM_017890, exon 43 of 62) 109620 NM_004374 1345 Hs.351875 NM_004374 HPRD:00494 COX6C - cytochrome c oxidase subunit VIc protein-coding 13-PTNLD9-TUMOR_peak_28633 chr2 141957872 141958078 + 7.06528 NA intron (NM_018557, intron 6 of 90) L1PA10|LINE|L1 931295 NM_018557 53353 Hs.656461 NM_018557 HPRD:16383 LRP1B LRP-DIT|LRPDIT low density lipoprotein receptor-related protein 1B protein-coding 13-PTNLD9-TUMOR_peak_36544 chr3 158138868 158138962 + 7.06528 NA intron (NM_001271834, intron 5 of 8) MER81|DNA|hAT-Blackjack 149940 NR_104147 100996447 Hs.369810 NR_104147 ENSG00000243150 LOC100996447 - uncharacterized LOC100996447 ncRNA 13-PTNLD9-TUMOR_peak_50076 chr8 11055001 11055170 + 7.06528 NA intron (NM_173683, intron 1 of 2) intron (NM_173683, intron 1 of 2) 3790 NM_173683 286046 Hs.657083 NM_173683 HPRD:12926 XKR6 C8orf21|C8orf5|C8orf7|XRG6 XK, Kell blood group complex subunit-related family, member 6 protein-coding 13-PTNLD9-TUMOR_peak_50440 chr8 27546914 27547032 + 7.06528 NA Intergenic Intergenic -12221 NR_037417 100500858 NR_037417 MIR3622A - microRNA 3622a ncRNA 13-PTNLD9-TUMOR_peak_51974 chr8 128403642 128403828 + 7.06528 NA intron (NR_117099, intron 3 of 3) intron (NR_117099, intron 3 of 3) -8909 NR_109834 101805488 Hs.745578 NR_109834 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_33988 chr3 17274988 17275084 + 7.06528 NA intron (NM_014744, intron 17 of 21) intron (NM_014744, intron 17 of 21) 300348 NR_037465 100500913 NR_037465 miRBase:MI0016135 MIR3714 - microRNA 3714 ncRNA 13-PTNLD9-TUMOR_peak_28847 chr2 159741994 159742090 + 7.06528 NA Intergenic HERVE-int|LTR|ERV1 -83104 NM_001145909 85461 Hs.61590 NM_033394 HPRD:18146 TANC1 ROLSB|TANC tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 protein-coding 13-PTNLD9-TUMOR_peak_31152 chr20 43394846 43394952 + 7.06528 NA intron (NM_001205317, intron 2 of 5) MER117|DNA|hAT-Charlie 20411 NM_022358 60598 Hs.528664 NM_022358 KCNK15 K2p15.1|KCNK11|KCNK14|KT3.3|TASK-5|TASK5|dJ781B1.1 potassium channel, subfamily K, member 15 protein-coding 13-PTNLD9-TUMOR_peak_30572 chr20 20530427 20530653 + 7.06528 NA intron (NM_020343, intron 23 of 39) intron (NM_020343, intron 23 of 39) 162726 NM_020343 57186 Hs.472285 NM_020343 ENSG00000188559 RALGAPA2 AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220 Ral GTPase activating protein, alpha subunit 2 (catalytic) protein-coding 13-PTNLD9-TUMOR_peak_24521 chr19 22605159 22605264 + 7.06528 NA promoter-TSS (NM_001098626) promoter-TSS (NM_001098626) -63 NM_001098626 148198 Hs.667355 NM_001098626 ENSG00000197360 ZNF98 F7175|ZNF739 zinc finger protein 98 protein-coding 13-PTNLD9-TUMOR_peak_5359 chr1 212588224 212588455 + 7.06528 NA promoter-TSS (NM_001198862) promoter-TSS (NM_001198862) -72 NM_018252 55248 Hs.445386 NM_018252 HPRD:07707 TMEM206 C1orf75 transmembrane protein 206 protein-coding 13-PTNLD9-TUMOR_peak_4389 chr1 171614197 171614294 + 7.06528 NA intron (NM_000261, intron 1 of 2) LTR41B|LTR|ERVL 7528 NM_000261 4653 Hs.436037 NM_000261 HPRD:03387 MYOC GLC1A|GPOA|JOAG|JOAG1|TIGR|myocilin myocilin, trabecular meshwork inducible glucocorticoid response protein-coding 13-PTNLD9-TUMOR_peak_13647 chr12 104682586 104682690 + 7.06135 NA intron (NM_001261445, intron 1 of 14) CpG 2178 NM_182729 7296 Hs.654922 NM_003330 HPRD:03068 TXNRD1 GRIM-12|TR|TR1|TRXR1|TXNR thioredoxin reductase 1 protein-coding 13-PTNLD9-TUMOR_peak_44588 chr6 31937555 31937677 + 7.05032 NA TTS (NM_006929) TTS (NM_006929) -1336 NR_026717 8859 Hs.654371 NM_004197 HPRD:07281 STK19 D6S60|D6S60E|G11|HLA-RP1|RP1 serine/threonine kinase 19 protein-coding 13-PTNLD9-TUMOR_peak_1679 chr1 47898193 47898338 + 7.05014 NA non-coding (NR_026878, exon 1 of 1) non-coding (NR_026878, exon 1 of 1) 2048 NR_026878 84793 Hs.127762 NM_032707 ENSG00000237424 FOXD2-AS1 - FOXD2 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_10543 chr11 71848070 71848206 + 7.05014 NA intron (NM_000804, intron 2 of 4) intron (NM_000804, intron 2 of 4) 1367 NM_000804 2352 Hs.352 NM_000804 HPRD:03918 FOLR3 FR-G|FR-gamma|gamma-hFR folate receptor 3 (gamma) protein-coding 13-PTNLD9-TUMOR_peak_17303 chr15 52580619 52580807 + 7.04959 NA intron (NM_018728, intron 1 of 40) intron (NM_018728, intron 1 of 40) 7282 NM_018728 55930 Hs.487036 NM_018728 HPRD:11380 MYO5C - myosin VC protein-coding 13-PTNLD9-TUMOR_peak_45116 chr6 43940689 43940900 + 7.04959 NA Intergenic L2c|LINE|L2 -27543 NM_001171992 221416 Hs.531926 NM_153246 HPRD:14640 C6orf223 - chromosome 6 open reading frame 223 protein-coding 13-PTNLD9-TUMOR_peak_54730 chr9 126097984 126098092 + 7.04959 NA Intergenic Intergenic -20408 NM_173689 286204 Hs.568340 NM_173689 HPRD:13093 CRB2 - crumbs family member 2 protein-coding 13-PTNLD9-TUMOR_peak_7238 chr10 47162718 47162951 + 7.04959 NA intron (NM_001271702, intron 9 of 11).2 MIRb|SINE|MIR 11309 NM_001271703 653145 Hs.535306 NM_001040084 ENSG00000165390 ANXA8 ANX8 annexin A8 protein-coding 13-PTNLD9-TUMOR_peak_36318 chr3 148847593 148847701 + 7.04959 NA exon (NM_032383, exon 1 of 17) exon (NM_032383, exon 1 of 17) 276 NM_032383 84343 Hs.558314 NM_032383 HPRD:05835 HPS3 SUTAL Hermansky-Pudlak syndrome 3 protein-coding 13-PTNLD9-TUMOR_peak_18354 chr16 4338737 4338832 + 7.04959 NA Intergenic Intergenic -15783 NM_003223 7023 Hs.513305 NM_003223 HPRD:11795 TFAP4 AP-4|bHLHc41 transcription factor AP-4 (activating enhancer binding protein 4) protein-coding 13-PTNLD9-TUMOR_peak_25191 chr19 47103887 47103987 + 7.04959 NA promoter-TSS (NM_005184) promoter-TSS (NM_005184) 520 NM_001205281 100506012 Hs.671661 NM_001205281 ENSG00000230510 PPP5D1 - PPP5 tetratricopeptide repeat domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_53209 chr9 38047351 38047553 + 7.04959 NA intron (NM_003028, intron 1 of 5) intron (NM_003028, intron 1 of 5) 21758 NM_003028 6461 Hs.521482 NM_003028 SHB bA3J10.2 Src homology 2 domain containing adaptor protein B protein-coding 13-PTNLD9-TUMOR_peak_12083 chr12 8543175 8543331 + 7.04959 NA promoter-TSS (NR_024420) promoter-TSS (NR_024420) 95 NR_024420 389634 Hs.434403 NM_001012988 HPRD:18395 LINC00937 - long intergenic non-protein coding RNA 937 ncRNA 13-PTNLD9-TUMOR_peak_29558 chr2 202508206 202508305 + 7.04874 NA promoter-TSS (NM_152388) promoter-TSS (NM_152388) -3 NM_001044385 65062 Hs.12319 NM_152388 HPRD:12448 TMEM237 ALS2CR4|JBTS14 transmembrane protein 237 protein-coding 13-PTNLD9-TUMOR_peak_46125 chr6 137539829 137539947 + 7.04874 NA intron (NM_000416, intron 1 of 6) Tigger3a|DNA|TcMar-Tigger 679 NM_000416 3459 Hs.520414 NM_000416 HPRD:00127 IFNGR1 CD119|IFNGR interferon gamma receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_54942 chr9 134249294 134249413 + 7.04874 NA Intergenic AluY|SINE|Alu -56124 NM_013318 84726 Hs.743955 NM_013318 ENSG00000130723 PRRC2B BAT2L|BAT2L1|KIAA0515|LQFBS-1 proline-rich coiled-coil 2B protein-coding 13-PTNLD9-TUMOR_peak_37675 chr4 3702926 3703214 + 7.04874 NA Intergenic Intergenic -23488 NR_034136 100133461 Hs.554274 NR_034136 ENSG00000250632 LOC100133461 - uncharacterized LOC100133461 ncRNA 13-PTNLD9-TUMOR_peak_15320 chr14 23525421 23525523 + 7.04874 NA intron (NM_144985, intron 1 of 12) intron (NM_144985, intron 1 of 12) 1275 NM_144985 64403 Hs.155912 NM_022478 HPRD:13019 CDH24 CDH11L cadherin 24, type 2 protein-coding 13-PTNLD9-TUMOR_peak_447 chr1 12239314 12239414 + 7.04874 NA intron (NM_001066, intron 1 of 9) intron (NM_001066, intron 1 of 9) 12304 NM_001066 7133 Hs.256278 NM_001066 HPRD:01862 TNFRSF1B CD120b|TBPII|TNF-R-II|TNF-R75|TNFBR|TNFR1B|TNFR2|TNFR80|p75|p75TNFR tumor necrosis factor receptor superfamily, member 1B protein-coding 13-PTNLD9-TUMOR_peak_16025 chr14 65147050 65147270 + 7.04618 NA Intergenic Intergenic -24033 NM_015549 26030 Hs.509637 NM_015549 HPRD:17861 PLEKHG3 ARHGEF43|KIAA0599 pleckstrin homology domain containing, family G (with RhoGef domain) member 3 protein-coding 13-PTNLD9-TUMOR_peak_22020 chr17 73719307 73719597 + 7.04618 NA intron (NM_001005731, intron 1 of 38) intron (NM_001005731, intron 1 of 38) -1324 NM_001005619 3691 Hs.632226 NM_000213 HPRD:00946 ITGB4 CD104 integrin, beta 4 protein-coding 13-PTNLD9-TUMOR_peak_2936 chr1 115053170 115053635 + 7.04262 NA exon (NM_015906, exon 1 of 20) exon (NM_015906, exon 1 of 20) 379 NM_015906 51592 Hs.26837 NM_015906 HPRD:10423 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 13-PTNLD9-TUMOR_peak_35774 chr3 127318056 127318236 + 7.04262 NA intron (NR_073375, intron 1 of 15) intron (NR_073375, intron 1 of 15) 946 NR_073375 4171 Hs.477481 NM_004526 HPRD:00303 MCM2 BM28|CCNL1|CDCL1|D3S3194|MITOTIN|cdc19 minichromosome maintenance complex component 2 protein-coding 13-PTNLD9-TUMOR_peak_31124 chr20 42815868 42816052 + 7.04262 NA 5' UTR (NM_020433, exon 1 of 6) 5' UTR (NM_020433, exon 1 of 6) 258 NM_175913 57158 Hs.441737 NM_020433 HPRD:12006 JPH2 CMH17|JP-2|JP2 junctophilin 2 protein-coding 13-PTNLD9-TUMOR_peak_15707 chr14 50468354 50468514 + 7.04262 NA intron (NM_001012706, intron 1 of 3) intron (NM_001012706, intron 1 of 3) 5804 NM_001012706 283551 Hs.660867 NM_001012706 HPRD:13397 C14orf182 - chromosome 14 open reading frame 182 protein-coding 13-PTNLD9-TUMOR_peak_27576 chr2 89871109 89871203 + 7.04128 NA Intergenic (CATTC)n|Satellite|Satellite 759272 NR_039635 100616399 NR_039635 miRBase:MI0016776 MIR4436A - microRNA 4436a ncRNA 13-PTNLD9-TUMOR_peak_37253 chr3 192537032 192537237 + 7.04035 NA intron (NM_178496, intron 1 of 1) intron (NM_178496, intron 1 of 1) -91746 NM_004113 2257 Hs.390250 NM_004113 HPRD:03303 FGF12 FGF12B|FHF1 fibroblast growth factor 12 protein-coding 13-PTNLD9-TUMOR_peak_27232 chr2 71205019 71205293 + 7.04035 NA promoter-TSS (NM_024933) promoter-TSS (NM_024933) -419 NM_001115116 79998 Hs.512744 NM_024933 HPRD:07762 ANKRD53 - ankyrin repeat domain 53 protein-coding 13-PTNLD9-TUMOR_peak_55904 chrX 54796264 54796421 + 7.04035 NA intron (NM_198510, intron 6 of 12) L1PA2|LINE|L1 28331 NM_198510 347365 Hs.454272 NM_198510 HPRD:17164 ITIH6 ITIH5L|UNQ6369|dJ14O9.1 inter-alpha-trypsin inhibitor heavy chain family, member 6 protein-coding 13-PTNLD9-TUMOR_peak_36984 chr3 184135784 184135883 + 7.04035 NA Intergenic Intergenic 37972 NM_003741 8646 Hs.166186 NM_003741 HPRD:04592 CHRD - chordin protein-coding 13-PTNLD9-TUMOR_peak_27400 chr2 85190907 85191098 + 7.04035 NA Intergenic Intergenic -7229 NM_020122 56888 Hs.654968 NM_020122 HPRD:13761 KCMF1 DEBT91|FIGC|PCMF|ZZZ1 potassium channel modulatory factor 1 protein-coding 13-PTNLD9-TUMOR_peak_9575 chr11 37522128 37522231 + 7.04035 NA Intergenic MLT1E2|LTR|ERVL-MaLR -902350 NM_001243786 5897 Hs.714519 NM_000536 HPRD:08913 RAG2 RAG-2 recombination activating gene 2 protein-coding 13-PTNLD9-TUMOR_peak_53284 chr9 41878212 41878351 + 7.04035 NA Intergenic Intergenic 76795 NR_015363 389741 Hs.380240 NM_203448 GLIDR LINC01172 glioblastoma down-regulated RNA ncRNA 13-PTNLD9-TUMOR_peak_14272 chr12 126569178 126569294 + 7.04035 NA Intergenic Intergenic -11302 NR_110053 101927464 Hs.443932 NR_110053 ENSG00000256342 LOC101927464 - uncharacterized LOC101927464 ncRNA 13-PTNLD9-TUMOR_peak_51908 chr8 126479265 126479567 + 7.04035 NA Intergenic Intergenic 34965 NM_001282985 10221 Hs.444947 NM_025195 HPRD:09863 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 13-PTNLD9-TUMOR_peak_8020 chr10 93683439 93683797 + 7.04035 NA promoter-TSS (NM_003972) promoter-TSS (NM_003972) -118 NM_003972 9044 Hs.500526 NM_003972 HPRD:05546 BTAF1 MOT1|TAF(II)170|TAF172|TAFII170 BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa protein-coding 13-PTNLD9-TUMOR_peak_2791 chr1 110364961 110365118 + 7.04035 NA Intergenic Intergenic -58395 NM_024526 79574 Hs.485352 NM_024526 HPRD:13277 EPS8L3 EPS8R3 EPS8-like 3 protein-coding 13-PTNLD9-TUMOR_peak_12980 chr12 56435397 56435679 + 7.04035 NA promoter-TSS (NM_001029) promoter-TSS (NM_001029) -148 NM_001029 6231 Hs.447562 NM_001029 HPRD:04743 RPS26 DBA10|S26 ribosomal protein S26 protein-coding 13-PTNLD9-TUMOR_peak_27868 chr2 102600067 102600175 + 7.03934 NA intron (NR_103791, intron 1 of 3) MLT1A0|LTR|ERVL-MaLR 194 NR_103791 100506328 Hs.516245 NR_103791 LINC01127 - long intergenic non-protein coding RNA 1127 ncRNA 13-PTNLD9-TUMOR_peak_3274 chr1 145097049 145097219 + 7.03934 NA intron (NM_004892, intron 1 of 5) intron (NM_004892, intron 1 of 5) 727 NM_004892 9554 Hs.632438 NM_004892 SEC22B ERS-24|SEC22L1 SEC22 vesicle trafficking protein homolog B (S. cerevisiae) (gene/pseudogene) protein-coding 13-PTNLD9-TUMOR_peak_4710 chr1 183439357 183439604 + 7.03934 NA intron (NR_040063, intron 2 of 4) intron (NR_040063, intron 2 of 4) 1637 NR_040063 284649 Hs.127384 NR_040063 ENSG00000232860 SMG7-AS1 DKFZP564C196 SMG7 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_14249 chr12 125402920 125403032 + 7.03094 NA Intergenic AluJb|SINE|Alu 2883 NR_049820 100847004 NR_049820 miRBase:MI0018167 MIR5188 - microRNA 5188 ncRNA 13-PTNLD9-TUMOR_peak_36424 chr3 151986963 151987139 + 7.03009 NA intron (NM_207292, intron 1 of 8) CpG 364 NR_027038 401093 Hs.725347 NR_027037 ENSG00000229619 MBNL1-AS1 - MBNL1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_25896 chr1_gl000192_random 506512 506612 + 7.02622 NA Intergenic Intergenic -37879 NR_120328 102724558 Hs.712738 NR_120328 LOC102724558 - uncharacterized LOC102724558 ncRNA 13-PTNLD9-TUMOR_peak_16952 chr15 31846511 31846757 + 7.02596 NA intron (NM_130901, intron 3 of 10) intron (NM_130901, intron 3 of 10) 100908 NM_130901 161725 Hs.355236 NM_130901 HPRD:12666 OTUD7A C15orf16|C16ORF15|CEZANNE2|OTUD7 OTU deubiquitinase 7A protein-coding 13-PTNLD9-TUMOR_peak_14861 chr13 75018467 75018587 + 7.02596 NA Intergenic Intergenic 25217 NR_047005 100874151 Hs.564552 NR_047005 ENSG00000226240 LINC00381 - long intergenic non-protein coding RNA 381 ncRNA 13-PTNLD9-TUMOR_peak_22591 chr18 10589041 10589309 + 7.02596 NA Intergenic CpG 63302 NM_003826 8774 Hs.464622 NM_003826 HPRD:04448 NAPG GAMMASNAP N-ethylmaleimide-sensitive factor attachment protein, gamma protein-coding 13-PTNLD9-TUMOR_peak_19930 chr16 84281597 84281734 + 7.02596 NA Intergenic L1ME3A|LINE|L1 -8309 NM_172347 93107 Hs.335877 NM_133490 KCNG4 KV6.3|KV6.4 potassium voltage-gated channel, subfamily G, member 4 protein-coding 13-PTNLD9-TUMOR_peak_8998 chr11 9091601 9091696 + 7.02596 NA intron (NM_001170690, intron 4 of 17) intron (NM_001170690, intron 4 of 17) 20278 NR_049874 100847015 NR_049874 MIR5691 - microRNA 5691 ncRNA 13-PTNLD9-TUMOR_peak_12447 chr12 31806120 31806439 + 7.02596 NA intron (NM_001135864, intron 1 of 3) intron (NM_001135864, intron 1 of 3) -5842 NM_173802 254013 Hs.740628 NM_173802 HPRD:14666 METTL20 C12orf72 methyltransferase like 20 protein-coding 13-PTNLD9-TUMOR_peak_37340 chr3 194451270 194451385 + 7.02596 NA intron (NR_037891, intron 1 of 3) LTR9|LTR|ERV1 22177 NR_037891 100507391 Hs.590099 NR_037891 ENSG00000237222 LOC100507391 - uncharacterized LOC100507391 ncRNA 13-PTNLD9-TUMOR_peak_4790 chr1 186628264 186628384 + 7.02596 NA Intergenic MLT1K|LTR|ERVL-MaLR 21235 NM_000963 5743 Hs.196384 NM_000963 HPRD:02599 PTGS2 COX-2|COX2|GRIPGHS|PGG/HS|PGHS-2|PHS-2|hCox-2 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase) protein-coding 13-PTNLD9-TUMOR_peak_23124 chr18 46133638 46133734 + 7.02596 NA intron (NM_001142397, intron 2 of 12) intron (NM_001142397, intron 2 of 12) -63285 NR_039897 100616366 NR_039897 MIR4743 - microRNA 4743 ncRNA 13-PTNLD9-TUMOR_peak_33202 chr22 36847874 36847985 + 7.02596 NA Intergenic Intergenic 29758 NM_012473 25828 Hs.211929 NM_012473 HPRD:07161 TXN2 MT-TRX|MTRX|TRX2 thioredoxin 2 protein-coding 13-PTNLD9-TUMOR_peak_40393 chr5 14908482 14908588 + 7.02596 NA Intergenic Intergenic -36648 NM_054027 56172 Hs.156727 NM_054027 HPRD:05509 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK ANKH inorganic pyrophosphate transport regulator protein-coding 13-PTNLD9-TUMOR_peak_16474 chr14 93473763 93473878 + 7.02596 NA intron (NM_001142593, intron 4 of 10) intron (NM_001142593, intron 4 of 10) -59977 NR_002808 319085 Hs.612888 NR_002808 ENSG00000258730 ITPK1-AS1 C14orf85|ITPK1-AS|ITPK1AS|NCRNA00203 ITPK1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_50391 chr8 26123529 26123747 + 7.02596 NA Intergenic Intergenic -25369 NM_002717 5520 Hs.146339 NM_002717 HPRD:09223 PPP2R2A B55A|B55ALPHA|PR52A|PR55A protein phosphatase 2, regulatory subunit B, alpha protein-coding 13-PTNLD9-TUMOR_peak_46070 chr6 133004770 133004962 + 7.02596 NA intron (NM_004666, intron 6 of 6) intron (NM_004666, intron 6 of 6) 30328 NM_004666 8876 Hs.12114 NM_004666 HPRD:04651 VNN1 HDLCQ8|Tiff66 vanin 1 protein-coding 13-PTNLD9-TUMOR_peak_2457 chr1 92074589 92074765 + 7.02596 NA Intergenic Intergenic 108012 NM_001134420 8317 Hs.533573 NM_003503 HPRD:10345 CDC7 CDC7L1|HsCDC7|Hsk1|huCDC7 cell division cycle 7 protein-coding 13-PTNLD9-TUMOR_peak_28554 chr2 135485099 135485258 + 7.02596 NA Intergenic Intergenic -8607 NM_030923 81615 Hs.369471 NM_030923 HPRD:13178 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 13-PTNLD9-TUMOR_peak_28990 chr2 167267764 167267863 + 7.02596 NA intron (NR_045628, intron 23 of 25) MER44C|DNA|TcMar-Tigger -35316 NM_002977 6335 Hs.439145 NM_002977 HPRD:04565 SCN9A ETHA|FEB3B|GEFSP7|NE-NA|NENA|Nav1.7|PN1|SFNP sodium channel, voltage-gated, type IX, alpha subunit protein-coding 13-PTNLD9-TUMOR_peak_24257 chr19 16178222 16178354 + 7.02428 NA promoter-TSS (NM_001145160) promoter-TSS (NM_001145160) -29 NM_001145160 7171 Hs.631618 NM_003290 HPRD:11734 TPM4 HEL-S-108 tropomyosin 4 protein-coding 13-PTNLD9-TUMOR_peak_46315 chr6 151367034 151367327 + 7.02428 NA intron (NM_001242768, intron 26 of 27) intron (NM_001242768, intron 26 of 27) 179711 NM_001242768 25902 Hs.591343 NM_015440 HPRD:09967 MTHFD1L FTHFSDC1|MTC1THFS|dJ292B18.2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like protein-coding 13-PTNLD9-TUMOR_peak_4260 chr1 165600954 165601085 + 7.02428 NA intron (NM_004528, intron 1 of 5) intron (NM_004528, intron 1 of 5) 909 NM_004528 4259 Hs.191734 NM_004528 HPRD:05192 MGST3 GST-III microsomal glutathione S-transferase 3 protein-coding 13-PTNLD9-TUMOR_peak_11537 chr11 125757986 125758121 + 7.02185 NA intron (NM_001134793, intron 1 of 2) CpG 1098 NM_001134793 219844 Hs.98133 NM_145014 HPRD:08148 HYLS1 HLS hydrolethalus syndrome 1 protein-coding 13-PTNLD9-TUMOR_peak_54353 chr9 110500763 110500922 + 7.02185 NA Intergenic Intergenic -248795 NM_004235 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel-like factor 4 (gut) protein-coding 13-PTNLD9-TUMOR_peak_10337 chr11 67055895 67056063 + 7.02185 NA promoter-TSS (NM_207354) promoter-TSS (NM_207354) -783 NM_207354 338692 Hs.438673 NM_207354 HPRD:17349 ANKRD13D - ankyrin repeat domain 13 family, member D protein-coding 13-PTNLD9-TUMOR_peak_50442 chr8 27562182 27562389 + 7.02185 NA Intergenic (CA)n|Simple_repeat|Simple_repeat -3001 NR_037418 100500871 NR_037418 miRBase:MI0016014 MIR3622B - microRNA 3622b ncRNA 13-PTNLD9-TUMOR_peak_30262 chr20 1447487 1447697 + 7.02185 NA non-coding (NR_038164, exon 1 of 8) non-coding (NR_038164, exon 1 of 8) 745 NM_016143 55968 Hs.12865 NM_016143 HPRD:09425 NSFL1C P47|UBX1|UBXD10|UBXN2C|dJ776F14.1 NSFL1 (p97) cofactor (p47) protein-coding 13-PTNLD9-TUMOR_peak_29547 chr2 202093029 202093131 + 7.02185 NA intron (NM_001206542, intron 7 of 7) intron (NM_001206542, intron 7 of 7) -5086 NM_033355 841 Hs.599762 NM_001228 HPRD:03459 CASP8 ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5 caspase 8, apoptosis-related cysteine peptidase protein-coding 13-PTNLD9-TUMOR_peak_47954 chr7 74075380 74075505 + 7.02127 NA intron (NM_001280800, intron 1 of 9) intron (NM_001280800, intron 1 of 9) 3451 NM_001163636 2969 Hs.647041 NM_001518 HPRD:03399 GTF2I BAP135|BTKAP1|DIWS|GTFII-I|IB291|SPIN|TFII-I|WBS|WBSCR6 general transcription factor IIi protein-coding 13-PTNLD9-TUMOR_peak_34512 chr3 48723068 48723412 + 7.01791 NA exon (NM_016453, exon 1 of 13) exon (NM_016453, exon 1 of 13) 126 NM_016453 51517 Hs.655006 NM_016453 HPRD:09450 NCKIPSD AF3P21|DIP|DIP1|ORF1|SPIN90|VIP54|WASLBP|WISH NCK interacting protein with SH3 domain protein-coding 13-PTNLD9-TUMOR_peak_19042 chr16 30996450 30996599 + 7.01791 NA promoter-TSS (NM_001142778) promoter-TSS (NM_001142778) 5 NM_001142778 80270 Hs.460618 NM_025193 HPRD:09680 HSD3B7 CBAS1|PFIC4|SDR11E3 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7 protein-coding 13-PTNLD9-TUMOR_peak_53327 chr9 44118701 44118891 + 7.01791 NA Intergenic CpG -265789 NR_121564 101927827 Hs.738704 NR_121564 ENSG00000229311 LOC101927827 - uncharacterized LOC101927827 ncRNA 13-PTNLD9-TUMOR_peak_25306 chr19 49061545 49061757 + 7.01791 NA intron (NM_177973, intron 1 of 6) CpG 6222 NM_177973 6820 Hs.369331 NM_004605 HPRD:04991 SULT2B1 HSST2 sulfotransferase family, cytosolic, 2B, member 1 protein-coding 13-PTNLD9-TUMOR_peak_5887 chr1 234349888 234350043 + 7.01791 NA promoter-TSS (NM_001300845) promoter-TSS (NM_001300845) 8 NM_001300845 148641 Hs.158748 NM_173508 HPRD:15378 SLC35F3 - solute carrier family 35, member F3 protein-coding 13-PTNLD9-TUMOR_peak_36947 chr3 183542739 183542993 + 7.01791 NA intron (NM_024871, intron 1 of 2) CpG 527 NM_024871 79929 Hs.478465 NM_024871 HPRD:07793 MAP6D1 MAPO6D1|SL21 MAP6 domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_19004 chr16 30456844 30456954 + 7.01791 NA exon (NM_012248, exon 1 of 1) exon (NM_012248, exon 1 of 1) 397 NM_012248 22928 Hs.118725 NM_012248 HPRD:12096 SEPHS2 SPS2|SPS2b selenophosphate synthetase 2 protein-coding 13-PTNLD9-TUMOR_peak_11910 chr12 5368929 5369043 + 7.01741 NA Intergenic Intergenic -16669 NR_120477 101929584 Hs.436529 NR_120476 ENSG00000256115 LOC101929584 - uncharacterized LOC101929584 ncRNA 13-PTNLD9-TUMOR_peak_50026 chr8 8000266 8000521 + 7.01741 NA Intergenic HERVS71-int|LTR|ERV1 -53782 NR_031689 100302186 NR_031689 miRBase:MI0006423 MIR548I3 MIR548I-3|MIRN548I3|hsa-mir-548i-3 microRNA 548i-3 ncRNA 13-PTNLD9-TUMOR_peak_48553 chr7 100487453 100487592 + 7.01000 NA promoter-TSS (NM_001015072) promoter-TSS (NM_001015072) -183 NM_001015072 402682 Hs.534845 NM_001015072 HPRD:18630 UFSP1 UFSP UFM1-specific peptidase 1 (non-functional) protein-coding 13-PTNLD9-TUMOR_peak_40154 chr5 672778 673193 + 7.01000 NA intron (NM_007030, intron 2 of 3) intron (NM_007030, intron 2 of 3) 20525 NM_007030 11076 Hs.481466 NM_007030 HPRD:18522 TPPP TPPP/p25|TPPP1|p24|p25|p25alpha tubulin polymerization promoting protein protein-coding 13-PTNLD9-TUMOR_peak_53584 chr9 72873483 72873600 + 7.01000 NA promoter-TSS (NM_015110) promoter-TSS (NM_015110) 249 NR_039990 100507299 Hs.556816 NR_039990 SMC5-AS1 MAMDC2-AS2 SMC5 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_51361 chr8 98770065 98770476 + 7.00577 NA Intergenic AluY|SINE|Alu -17539 NM_018407 55353 Hs.492314 NM_018407 LAPTM4B LAPTM4beta|LC27 lysosomal protein transmembrane 4 beta protein-coding 13-PTNLD9-TUMOR_peak_3784 chr1 154435722 154435824 + 7.00577 NA intron (NM_000565, intron 9 of 9) intron (NM_000565, intron 9 of 9) 38753 NM_001010846 126669 Hs.591481 NM_001010846 HPRD:17293 SHE - Src homology 2 domain containing E protein-coding 13-PTNLD9-TUMOR_peak_45961 chr6 117423807 117423904 + 7.00577 NA Intergenic L1HS|LINE|L1 -162866 NM_182645 245806 Hs.99324 NM_153453 HPRD:18282 VGLL2 VGL2|VITO1 vestigial-like family member 2 protein-coding 13-PTNLD9-TUMOR_peak_12935 chr12 54764161 54764257 + 7.00577 NA exon (NM_001290002, exon 9 of 9) exon (NM_001290002, exon 9 of 9) -5939 NM_020370 53831 Hs.306199 NM_020370 HPRD:16213 GPR84 EX33|GPCR4 G protein-coupled receptor 84 protein-coding 13-PTNLD9-TUMOR_peak_35903 chr3 130539878 130540061 + 7.00577 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -29400 NM_001199182 27032 Hs.584884 NM_014382 HPRD:05089 ATP2C1 ATP2C1A|BCPM|HHD|PMR1|SPCA1|hSPCA1 ATPase, Ca++ transporting, type 2C, member 1 protein-coding 13-PTNLD9-TUMOR_peak_2316 chr1 85353376 85353484 + 7.00577 NA intron (NM_012152, intron 1 of 2) L1MC4|LINE|L1 5466 NM_012152 23566 Hs.674915 NM_012152 HPRD:05486 LPAR3 EDG7|Edg-7|GPCR|HOFNH30|LP-A3|LPA3|RP4-678I3 lysophosphatidic acid receptor 3 protein-coding 13-PTNLD9-TUMOR_peak_51967 chr8 128054126 128054268 + 7.00577 NA Intergenic Intergenic 28798 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_6569 chr10 16934056 16934236 + 7.00577 NA intron (NM_001081, intron 54 of 66) intron (NM_001081, intron 54 of 66) -74693 NM_012425 6251 Hs.524161 NM_012425 HPRD:01551 RSU1 RSP-1 Ras suppressor protein 1 protein-coding 13-PTNLD9-TUMOR_peak_36119 chr3 138917898 138918109 + 7.00577 NA Intergenic MIRc|SINE|MIR 34361 NR_027070 140464 Hs.721270 NR_027070 PISRT1 NCRNA00195 polled intersex syndrome regulated transcript 1 (non-protein coding RNA) ncRNA 13-PTNLD9-TUMOR_peak_26010 chr2 8288527 8288699 + 7.00577 NA intron (NR_034135, intron 7 of 8) MIR|SINE|MIR -171668 NR_015405 339788 Hs.46864 NR_015405 ENSG00000235665 LINC00298 - long intergenic non-protein coding RNA 298 ncRNA 13-PTNLD9-TUMOR_peak_29631 chr2 206520110 206520266 + 7.00577 NA Intergenic Intergenic -27036 NM_201266 8828 Hs.471200 NM_003872 HPRD:03643 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 13-PTNLD9-TUMOR_peak_29956 chr2 228280372 228280471 + 7.00577 NA Intergenic Intergenic -36399 NM_024795 79853 Hs.156652 NM_024795 HPRD:08008 TM4SF20 PRO994|SLI5|TCCE518 transmembrane 4 L six family member 20 protein-coding 13-PTNLD9-TUMOR_peak_25034 chr19 41768287 41768548 + 7.00392 NA promoter-TSS (NM_144732) promoter-TSS (NM_144732) 36 NM_144732 11100 Hs.155218 NM_007040 HPRD:10428 HNRNPUL1 E1B-AP5|E1BAP5|HNRPUL1 heterogeneous nuclear ribonucleoprotein U-like 1 protein-coding 13-PTNLD9-TUMOR_peak_52562 chr8 146252231 146252362 + 7.00347 NA Intergenic HERVK-int|LTR|ERVK -24011 NR_023392 286101 Hs.367856 NR_023392 ZNF252P ZNF252 zinc finger protein 252, pseudogene pseudo 13-PTNLD9-TUMOR_peak_24945 chr19 39888413 39888528 + 7.00347 NA 3' UTR (NM_017592, exon 4 of 4) 3' UTR (NM_017592, exon 4 of 4) 6507 NM_017592 55588 Hs.611541 NM_017592 HPRD:13748 MED29 IXL mediator complex subunit 29 protein-coding 13-PTNLD9-TUMOR_peak_16801 chr15 23263227 23263343 + 7.00257 NA TTS (NR_024074) TTS (NR_024074) 8043 NR_024074 283796 Hs.375441 NR_024074 HPRD:08189 GOLGA8I GOLGA8IP|GOLGA9P golgin A8 family, member I pseudo 13-PTNLD9-TUMOR_peak_20098 chr16 88851029 88851243 + 7.00257 NA intron (NM_001142864, intron 1 of 50) CpG 236 NM_001142864 9780 Hs.377001 NM_001142864 HPRD:10945 PIEZO1 DHS|FAM38A|Mib piezo-type mechanosensitive ion channel component 1 protein-coding 13-PTNLD9-TUMOR_peak_21938 chr17 72510131 72510453 + 6.99366 NA Intergenic (ATGTG)n|Simple_repeat|Simple_repeat 17321 NM_174892 124599 Hs.313343 NM_174892 HPRD:18223 CD300LB CD300b|CLM-7|CLM7|CMRF35-A2|IREM-3|IREM3|TREM-5|TREM5 CD300 molecule-like family member b protein-coding 13-PTNLD9-TUMOR_peak_37118 chr3 187467991 187468139 + 6.99366 NA Intergenic Intergenic -4552 NM_001706 604 Hs.478588 NM_001706 HPRD:00180 BCL6 BCL5|BCL6A|LAZ3|ZBTB27|ZNF51 B-cell CLL/lymphoma 6 protein-coding 13-PTNLD9-TUMOR_peak_36951 chr3 183735300 183735395 + 6.99366 NA intron (NM_001023587, intron 1 of 6) CpG 380 NM_005688 10057 Hs.368563 NM_005688 HPRD:06898 ABCC5 ABC33|EST277145|MOAT-C|MOATC|MRP5|SMRP|pABC11 ATP-binding cassette, sub-family C (CFTR/MRP), member 5 protein-coding 13-PTNLD9-TUMOR_peak_56585 chrX 148621061 148621158 + 6.99143 NA intron (NR_027455, intron 1 of 9) intron (NR_027455, intron 1 of 9) 203 NR_027455 100131434 Hs.669775 NM_001039766 LINC00893 - long intergenic non-protein coding RNA 893 ncRNA 13-PTNLD9-TUMOR_peak_1632 chr1 46988132 46988386 + 6.98949 NA Intergenic Intergenic 15591 NM_172225 127343 Hs.375623 NM_147192 HPRD:07593 DMBX1 MBX|OTX3|PAXB diencephalon/mesencephalon homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_54740 chr9 126158360 126158625 + 6.98723 NA intron (NM_020946, intron 20 of 21) intron (NM_020946, intron 20 of 21) 6390 NR_030332 693186 NR_030332 MIR601 MIRN601|hsa-mir-601 microRNA 601 ncRNA 13-PTNLD9-TUMOR_peak_15552 chr14 35763573 35763684 + 6.98723 NA intron (NM_001282232, intron 1 of 6) intron (NM_001282232, intron 1 of 6) 2105 NM_002791 5687 Hs.446260 NM_002791 HPRD:04171 PSMA6 IOTA|PROS27|p27K proteasome (prosome, macropain) subunit, alpha type, 6 protein-coding 13-PTNLD9-TUMOR_peak_19552 chr16 66969280 66969501 + 6.98723 NA exon (NM_003869, exon 1 of 12) exon (NM_003869, exon 1 of 12) 1016 NR_036684 8824 Hs.282975 NM_003869 HPRD:07062 CES2 CE-2|CES2A1|PCE-2|iCE carboxylesterase 2 protein-coding 13-PTNLD9-TUMOR_peak_43110 chr5 173998886 173999012 + 6.98723 NA Intergenic Intergenic -152626 NM_002449 4488 Hs.89404 NM_002449 HPRD:00421 MSX2 CRS2|FPP|HOX8|MSH|PFM|PFM1 msh homeobox 2 protein-coding 13-PTNLD9-TUMOR_peak_33986 chr3 17156820 17156914 + 6.98723 NA Intergenic L1ME2|LINE|L1 182179 NR_037465 100500913 NR_037465 miRBase:MI0016135 MIR3714 - microRNA 3714 ncRNA 13-PTNLD9-TUMOR_peak_43038 chr5 172222415 172222705 + 6.98723 NA Intergenic Intergenic -24357 NM_004417 1843 Hs.171695 NM_004417 HPRD:02835 DUSP1 CL100|HVH1|MKP-1|MKP1|PTPN10 dual specificity phosphatase 1 protein-coding 13-PTNLD9-TUMOR_peak_26044 chr2 9392245 9392421 + 6.98723 NA intron (NM_003887, intron 1 of 27) intron (NM_003887, intron 1 of 27) 45439 NM_003887 8853 Hs.555902 NM_003887 HPRD:04820 ASAP2 AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 protein-coding 13-PTNLD9-TUMOR_peak_1307 chr1 40857951 40858146 + 6.98723 NA promoter-TSS (NM_001198979) promoter-TSS (NM_001198979) -969 NM_001198979 64744 Hs.15200 NM_022733 HPRD:12442 SMAP2 SMAP1L small ArfGAP2 protein-coding 13-PTNLD9-TUMOR_peak_10385 chr11 67734993 67735121 + 6.98723 NA Intergenic Intergenic 36538 NM_030930 81622 Hs.502989 NM_030930 HPRD:12191 UNC93B1 IIAE1|UNC93|UNC93B|Unc-93B1 unc-93 homolog B1 (C. elegans) protein-coding 13-PTNLD9-TUMOR_peak_24534 chr19 23598767 23598950 + 6.98723 NA Intergenic Intergenic -20496 NM_003430 7644 Hs.654471 NM_003430 HPRD:04916 ZNF91 HPF7|HTF10 zinc finger protein 91 protein-coding 13-PTNLD9-TUMOR_peak_8288 chr10 106205282 106205505 + 6.98723 NA intron (NM_001008723, intron 15 of 17) intron (NM_001008723, intron 15 of 17) 34640 NR_120624 101927523 Hs.407539 NR_120624 ENSG00000225768 LOC101927523 - uncharacterized LOC101927523 ncRNA 13-PTNLD9-TUMOR_peak_49930 chr8 591627 591746 + 6.98723 NA Intergenic Intergenic 89540 NM_207332 157697 Hs.655310 NM_207332 HPRD:14105 ERICH1 - glutamate-rich 1 protein-coding 13-PTNLD9-TUMOR_peak_22473 chr18 3585965 3586064 + 6.98723 NA intron (NM_001242764, intron 4 of 9) intron (NM_001242764, intron 4 of 9) -8098 NR_024101 649446 Hs.19872 NM_001039796 DLGAP1-AS1 HsT914 DLGAP1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_32685 chr22 18507242 18507421 + 6.98723 NA promoter-TSS (NM_015241) promoter-TSS (NM_015241) -6 NM_015241 57553 Hs.528024 NM_015241 ENSG00000243156 MICAL3 MICAL-3 microtubule associated monooxygenase, calponin and LIM domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_55541 chrX 12992732 12992854 + 6.98723 NA promoter-TSS (NM_021109) promoter-TSS (NM_021109) -433 NM_021109 7114 Hs.437277 NM_021109 HPRD:02153 TMSB4X FX|PTMB4|TB4X|TMSB4 thymosin beta 4, X-linked protein-coding 13-PTNLD9-TUMOR_peak_23775 chr19 6361433 6361545 + 6.98723 NA promoter-TSS (NM_006012) promoter-TSS (NM_006012) 26 NM_006012 8192 Hs.515092 NM_006012 HPRD:03074 CLPP PRLTS3 caseinolytic mitochondrial matrix peptidase proteolytic subunit protein-coding 13-PTNLD9-TUMOR_peak_50018 chr8 7750450 7750588 + 6.98723 NA Intergenic Intergenic -1568 NM_004942 1673 Hs.105924 NM_004942 HPRD:03739 DEFB4A BD-2|DEFB-2|DEFB102|DEFB2|DEFB4|HBD-2|SAP1 defensin, beta 4A protein-coding 13-PTNLD9-TUMOR_peak_49031 chr7 129413258 129413383 + 6.98723 NA Intergenic Intergenic 1289 NR_029512 407053 NR_029512 miRBase:MI0000098 MIR96 DFNA50|MIRN96|hsa-mir-96|miR-96|miRNA96 microRNA 96 ncRNA 13-PTNLD9-TUMOR_peak_54946 chr9 134406575 134406762 + 6.98723 NA promoter-TSS (NM_001135954) promoter-TSS (NM_001135954) -6 NM_031432 83549 Hs.9597 NM_031432 HPRD:18256 UCK1 URK1 uridine-cytidine kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_44030 chr6 19410843 19410985 + 6.98723 NA Intergenic Intergenic -230203 NR_110860 101928519 Hs.551771 NR_110860 LOC101928519 - uncharacterized LOC101928519 ncRNA 13-PTNLD9-TUMOR_peak_27824 chr2 100937866 100937971 + 6.98723 NA exon (NM_198461, exon 1 of 12) exon (NM_198461, exon 1 of 12) 1277 NM_198461 164832 Hs.21380 NM_198461 HPRD:13503 LONRF2 RNF192 LON peptidase N-terminal domain and ring finger 2 protein-coding 13-PTNLD9-TUMOR_peak_3043 chr1 118181459 118181746 + 6.98723 NA Intergenic L2c|LINE|L2 32998 NM_017709 54855 Hs.356216 NM_017709 HPRD:13312 FAM46C - family with sequence similarity 46, member C protein-coding 13-PTNLD9-TUMOR_peak_34939 chr3 71563916 71564016 + 6.98723 NA intron (NM_001012505, intron 2 of 6) intron (NM_001012505, intron 2 of 6) 27274 NR_031697 100302112 NR_031697 miRBase:MI0006431 MIR1284 MIRN1284|hsa-mir-1284 microRNA 1284 ncRNA 13-PTNLD9-TUMOR_peak_46175 chr6 142864024 142864132 + 6.98680 NA intron (NR_027311, intron 2 of 2) MER48|LTR|ERV1 94895 NR_027311 153910 Hs.350819 NR_027311 ENSG00000236366 LOC153910 - uncharacterized LOC153910 ncRNA 13-PTNLD9-TUMOR_peak_53922 chr9 91406343 91406571 + 6.98680 NA Intergenic Intergenic -45637 NR_036252 100423015 NR_036252 miRBase:MI0015898 MIR4289 - microRNA 4289 ncRNA 13-PTNLD9-TUMOR_peak_30067 chr2 235321533 235321700 + 6.98680 NA Intergenic Intergenic 84077 NM_005737 10123 Hs.111554 NM_005737 HPRD:11988 ARL4C ARL7|LAK ADP-ribosylation factor-like 4C protein-coding 13-PTNLD9-TUMOR_peak_52399 chr8 143946423 143946549 + 6.98680 NA Intergenic L1PB4|LINE|L1 14750 NM_001026213 1584 Hs.184927 NM_000497 HPRD:01943 CYP11B1 CPN1|CYP11B|FHI|P450C11 cytochrome P450, family 11, subfamily B, polypeptide 1 protein-coding 13-PTNLD9-TUMOR_peak_35182 chr3 99693953 99694146 + 6.98680 NA intron (NM_182909, intron 1 of 5) intron (NM_182909, intron 1 of 5) -10807 NR_037486 100500859 NR_037486 miRBase:MI0016428 MIR3921 - microRNA 3921 ncRNA 13-PTNLD9-TUMOR_peak_9166 chr11 14433486 14433600 + 6.98680 NA Intergenic Intergenic -47491 NM_001177314 22800 Hs.502004 NM_012250 HPRD:02518 RRAS2 TC21 related RAS viral (r-ras) oncogene homolog 2 protein-coding 13-PTNLD9-TUMOR_peak_17662 chr15 75063513 75063637 + 6.98680 NA Intergenic Intergenic -10850 NM_004383 1445 Hs.77793 NM_004383 HPRD:00496 CSK - c-src tyrosine kinase protein-coding 13-PTNLD9-TUMOR_peak_360 chr1 10168458 10168713 + 6.98680 NA intron (NM_001105562, intron 7 of 27) intron (NM_001105562, intron 7 of 27) 75544 NM_006048 10277 Hs.593974 NM_006048 HPRD:11659 UBE4B E4|HDNB1|UBOX3|UFD2|UFD2A ubiquitination factor E4B protein-coding 13-PTNLD9-TUMOR_peak_21557 chr17 54793387 54793563 + 6.98680 NA Intergenic Intergenic 117781 NM_001085430 339210 Hs.658949 NM_001085430 ENSG00000214226 C17orf67 - chromosome 17 open reading frame 67 protein-coding 13-PTNLD9-TUMOR_peak_17358 chr15 58820319 58820528 + 6.98680 NA intron (NM_000236, intron 1 of 8) intron (NM_000236, intron 1 of 8) -29489 NR_120338 101928694 Hs.655781 NR_120338 ENSG00000259293 LOC101928694 - uncharacterized LOC101928694 ncRNA 13-PTNLD9-TUMOR_peak_51317 chr8 95315927 95316185 + 6.98680 NA Intergenic Intergenic -41509 NM_005261 2669 Hs.654463 NM_005261 HPRD:11553 GEM KIR GTP binding protein overexpressed in skeletal muscle protein-coding 13-PTNLD9-TUMOR_peak_19360 chr16 53826574 53826715 + 6.98680 NA intron (NM_001080432, intron 1 of 8) intron (NM_001080432, intron 1 of 8) 88769 NM_001080432 79068 Hs.528833 NM_001080432 FTO ALKBH9 fat mass and obesity associated protein-coding 13-PTNLD9-TUMOR_peak_26457 chr2 29181619 29181725 + 6.98680 NA Intergenic Intergenic -22492 NM_199280 165186 Hs.525977 NM_199280 HPRD:14110 FAM179A - family with sequence similarity 179, member A protein-coding 13-PTNLD9-TUMOR_peak_28695 chr2 150101093 150101198 + 6.98680 NA Intergenic Intergenic -85354 NM_001195685 130574 Hs.21929 NM_194317 HPRD:14676 LYPD6 - LY6/PLAUR domain containing 6 protein-coding 13-PTNLD9-TUMOR_peak_39101 chr4 113430894 113431024 + 6.98680 NA Intergenic Intergenic 6369 NM_024019 63973 Hs.744415 NM_024019 HPRD:06976 NEUROG2 Atoh4|Math4A|NGN2|bHLHa8|ngn-2 neurogenin 2 protein-coding 13-PTNLD9-TUMOR_peak_46135 chr6 138347636 138347732 + 6.98680 NA Intergenic LTR40c|LTR|ERVL 80976 NM_022121 64065 Hs.201446 NM_022121 HPRD:17836 PERP KCP1|KRTCAP1|PIGPC1|THW|dJ496H19.1 PERP, TP53 apoptosis effector protein-coding 13-PTNLD9-TUMOR_peak_33008 chr22 26523336 26523658 + 6.98680 NA Intergenic Intergenic -41943 NM_001184773 23544 Hs.194766 NM_021115 HPRD:08449 SEZ6L - seizure related 6 homolog (mouse)-like protein-coding 13-PTNLD9-TUMOR_peak_31773 chr20 61154736 61154955 + 6.98680 NA intron (NM_178463, intron 2 of 3) intron (NM_178463, intron 2 of 3) 3332 NR_029780 406904 NR_029780 MIR1-1 MIRN1-1|hsa-mir-1-1|miRNA1-1 microRNA 1-1 ncRNA 13-PTNLD9-TUMOR_peak_54597 chr9 119663680 119663774 + 6.98680 NA intron (NM_014010, intron 9 of 21) AluJb|SINE|Alu 214146 NM_012210 22954 Hs.591910 NM_012210 HPRD:03797 TRIM32 BBS11|HT2A|LGMD2H|TATIP tripartite motif containing 32 protein-coding 13-PTNLD9-TUMOR_peak_14836 chr13 67240220 67240399 + 6.98680 NA intron (NM_020403, intron 2 of 3) intron (NM_020403, intron 2 of 3) -158992 NR_046527 100874064 Hs.569284 NR_046527 ENSG00000228842 PCDH9-AS2 - PCDH9 antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_2632 chr1 100274344 100274520 + 6.98680 NA Intergenic Intergenic -41208 NM_000642 178 Hs.904 NM_000028 HPRD:01984 AGL GDE amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase protein-coding 13-PTNLD9-TUMOR_peak_29803 chr2 218136652 218136782 + 6.98680 NA Intergenic Intergenic -411935 NM_003284 7141 Hs.3017 NM_003284 HPRD:01830 TNP1 TP1 transition protein 1 (during histone to protamine replacement) protein-coding 13-PTNLD9-TUMOR_peak_17149 chr15 43415279 43415612 + 6.98680 NA Intergenic Intergenic -10277 NM_024956 80021 Hs.511175 NM_024956 HPRD:08669 TMEM62 - transmembrane protein 62 protein-coding 13-PTNLD9-TUMOR_peak_19422 chr16 56902761 56902855 + 6.98680 NA intron (NM_001126107, intron 3 of 25) AluSg7|SINE|Alu 3689 NM_001126108 6559 Hs.669115 NM_000339 HPRD:02984 SLC12A3 NCC|NCCT|TSC solute carrier family 12 (sodium/chloride transporter), member 3 protein-coding 13-PTNLD9-TUMOR_peak_50527 chr8 30112385 30112541 + 6.98680 NA Intergenic Intergenic -4250 NR_039605 100616190 NR_039605 MIR548O2 - microRNA 548o-2 ncRNA 13-PTNLD9-TUMOR_peak_50230 chr8 20988552 20988674 + 6.98680 NA Intergenic Intergenic 157116 NR_033894 286114 Hs.651884 NR_033894 ENSG00000253199 LOC286114 - uncharacterized LOC286114 ncRNA 13-PTNLD9-TUMOR_peak_16352 chr14 78297182 78297371 + 6.98680 NA intron (NM_001142545, intron 3 of 9) intron (NM_001142545, intron 3 of 9) 30850 NM_020421 57143 Hs.413208 NM_020421 HPRD:10630 ADCK1 - aarF domain containing kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_14837 chr13 67568301 67568455 + 6.98680 NA intron (NR_046637, intron 1 of 2) LTR50|LTR|ERVL 3360 NR_046637 100874087 Hs.606903 NR_046637 PCDH9-AS4 - PCDH9 antisense RNA 4 ncRNA 13-PTNLD9-TUMOR_peak_8067 chr10 97288857 97288977 + 6.98680 NA intron (NM_001290294, intron 1 of 31) intron (NM_001290294, intron 1 of 31) 32260 NM_015385 10580 Hs.38621 NM_006434 HPRD:05587 SORBS1 CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1 sorbin and SH3 domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_8130 chr10 99629250 99629456 + 6.98680 NA 3' UTR (NM_001010917, exon 5 of 5) 3' UTR (NM_001010917, exon 5 of 5) 19358 NM_001010917 401647 Hs.567524 NM_001010917 HPRD:16579 GOLGA7B C10orf132|C10orf133|bA451M19.3|bA459F3.4 golgin A7 family, member B protein-coding 13-PTNLD9-TUMOR_peak_38021 chr4 14890483 14890577 + 6.98680 NA Intergenic Intergenic 113139 NR_038857 441009 Hs.535004 NR_038857 ENSG00000247624 CPEB2-AS1 - CPEB2 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_26178 chr2 15503395 15503508 + 6.98680 NA intron (NR_052013, intron 32 of 50) intron (NR_052013, intron 32 of 50) 198021 NR_052013 51594 Hs.467759 NM_015909 HPRD:10473 NBAS NAG|SOPH neuroblastoma amplified sequence protein-coding 13-PTNLD9-TUMOR_peak_20295 chr17 4133581 4133710 + 6.98680 NA intron (NR_047571, intron 2 of 23) intron (NR_047571, intron 2 of 23) 33497 NM_001257999 51479 Hs.696087 NM_016376 HPRD:09717 ANKFY1 ANKHZN|BTBD23|ZFYVE14 ankyrin repeat and FYVE domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_19849 chr16 79977739 79977840 + 6.98680 NA Intergenic L2b|LINE|L2 148643 NR_104661 101928248 Hs.659802 NR_104660 LOC101928248 - uncharacterized LOC101928248 ncRNA 13-PTNLD9-TUMOR_peak_26698 chr2 43124081 43124225 + 6.98680 NA Intergenic Intergenic -104402 NM_012205 23498 Hs.368805 NM_012205 HPRD:05158 HAAO 3-HAO|HAO 3-hydroxyanthranilate 3,4-dioxygenase protein-coding 13-PTNLD9-TUMOR_peak_45987 chr6 122102201 122102327 + 6.98680 NA Intergenic L2a|LINE|L2 345541 NM_000165 2697 Hs.74471 NM_000165 HPRD:00414 GJA1 AVSD3|CMDR|CX43|GJAL|HLHS1|HSS|ODDD gap junction protein, alpha 1, 43kDa protein-coding 13-PTNLD9-TUMOR_peak_42419 chr5 141736585 141736774 + 6.98680 NA intron (NR_120664, intron 3 of 3) CpG 31821 NR_120664 101926941 Hs.658945 NR_120664 ENSG00000231185 LOC101926941 - uncharacterized LOC101926941 ncRNA 13-PTNLD9-TUMOR_peak_21415 chr17 47957996 47958090 + 6.98680 NA Intergenic CpG -32664 NM_001077504 255061 Hs.652130 NM_170685 HPRD:09701 TAC4 EK|HK-1|HK1|PPT-C tachykinin 4 (hemokinin) protein-coding 13-PTNLD9-TUMOR_peak_23110 chr18 45790534 45790628 + 6.98680 NA Intergenic Intergenic -126901 NM_001039360 201501 Hs.515388 NM_001039360 ENSG00000184828 ZBTB7C APM-1|APM1|ZBTB36|ZNF857C zinc finger and BTB domain containing 7C protein-coding 13-PTNLD9-TUMOR_peak_43592 chr6 4582346 4582517 + 6.98680 NA Intergenic Intergenic -28368 NR_122107 497048 Hs.591355 NM_001011540 KU-MEL-3 - uncharacterized LOC497048 ncRNA 13-PTNLD9-TUMOR_peak_19783 chr16 75540544 75540720 + 6.98680 NA Intergenic Intergenic -11706 NM_021615 4166 Hs.655622 NM_021615 CHST6 MCDC1 carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 6 protein-coding 13-PTNLD9-TUMOR_peak_30084 chr2 236079613 236079727 + 6.98680 NA Intergenic Intergenic 219042 NM_014521 23677 Hs.516777 NM_014521 HPRD:09285 SH3BP4 BOG25|TTP SH3-domain binding protein 4 protein-coding 13-PTNLD9-TUMOR_peak_52732 chr9 8456406 8456555 + 6.98680 NA intron (NM_130392, intron 17 of 30) intron (NM_130392, intron 17 of 30) 277466 NM_130393 5789 Hs.446083 NM_002839 HPRD:03358 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase, receptor type, D protein-coding 13-PTNLD9-TUMOR_peak_37687 chr4 3875280 3875374 + 6.98680 NA Intergenic Intergenic 81821 NR_024253 348926 Hs.591720 NR_024253 FAM86EP - family with sequence similarity 86, member A pseudogene pseudo 13-PTNLD9-TUMOR_peak_41840 chr5 118873649 118873761 + 6.98680 NA intron (NM_001292028, intron 23 of 23) intron (NM_001292028, intron 23 of 23) 85513 NM_001199291 3295 Hs.406861 NM_000414 HPRD:03514 HSD17B4 DBP|MFE-2|MPF-2|PRLTS1|SDR8C1 hydroxysteroid (17-beta) dehydrogenase 4 protein-coding 13-PTNLD9-TUMOR_peak_2293 chr1 84326300 84326563 + 6.98680 NA promoter-TSS (NR_119374) promoter-TSS (NR_119374) -202 NR_119374 101927560 Hs.559661 NR_119374 ENSG00000233008 LOC101927560 - uncharacterized LOC101927560 ncRNA 13-PTNLD9-TUMOR_peak_23393 chr18 61272161 61272284 + 6.98680 NA Intergenic Intergenic 17688 NM_012397 5275 Hs.241407 NM_012397 HPRD:05118 SERPINB13 HSHUR7SEQ|HUR7|PI13|headpin serpin peptidase inhibitor, clade B (ovalbumin), member 13 protein-coding 13-PTNLD9-TUMOR_peak_5325 chr1 209253783 209254023 + 6.98680 NA Intergenic L2b|LINE|L2 -348265 NM_001104548 642587 Hs.510543 NM_001104548 MIR205HG LINC00510 MIR205 host gene (non-protein coding) protein-coding 13-PTNLD9-TUMOR_peak_35623 chr3 124034213 124034314 + 6.98680 NA intron (NM_001024660, intron 6 of 59) intron (NM_001024660, intron 6 of 59) -58916 NR_106731 102464832 NR_106731 MIR6083 hsa-mir-6083 microRNA 6083 ncRNA 13-PTNLD9-TUMOR_peak_15401 chr14 24950957 24951067 + 6.98680 NA intron (NR_110032, intron 2 of 2) intron (NR_110032, intron 2 of 2) 26459 NM_001836 1215 Hs.135626 NM_001836 HPRD:00346 CMA1 CYH|MCT1|chymase chymase 1, mast cell protein-coding 13-PTNLD9-TUMOR_peak_48838 chr7 112102469 112102626 + 6.98680 NA intron (NM_001007245, intron 9 of 12) intron (NM_001007245, intron 9 of 12) 10434 NM_001197079 3475 Hs.7879 NM_001550 IFRD1 PC4|TIS7 interferon-related developmental regulator 1 protein-coding 13-PTNLD9-TUMOR_peak_55520 chrX 9834772 9834880 + 6.98680 NA intron (NM_001649, intron 1 of 9) intron (NM_001649, intron 1 of 9) 80330 NM_001649 357 Hs.567236 NM_001649 HPRD:02113 SHROOM2 APXL|HSAPXL shroom family member 2 protein-coding 13-PTNLD9-TUMOR_peak_14295 chr12 129032153 129032311 + 6.98680 NA intron (NM_001136103, intron 3 of 8) intron (NM_001136103, intron 3 of 8) 253595 NR_037406 100500817 NR_037406 MIR3612 - microRNA 3612 ncRNA 13-PTNLD9-TUMOR_peak_9629 chr11 44467564 44467758 + 6.98680 NA Intergenic Intergenic -119480 NM_002231 3732 Hs.527778 NM_002231 CD82 4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27 CD82 molecule protein-coding 13-PTNLD9-TUMOR_peak_38200 chr4 38950125 38950475 + 6.98680 NA Intergenic Intergenic 80647 NR_030300 693159 NR_030300 miRBase:MI0003581 MIR574 MIR574-3p|MIRN574|hsa-mir-574 microRNA 574 ncRNA 13-PTNLD9-TUMOR_peak_29807 chr2 218225682 218225829 + 6.98680 NA intron (NR_026597, intron 8 of 12) intron (NR_026597, intron 8 of 12) 395561 NR_026597 729582 Hs.572788 NR_026597 ENSG00000231672 DIRC3 - disrupted in renal carcinoma 3 ncRNA 13-PTNLD9-TUMOR_peak_26363 chr2 26700861 26700996 + 6.98680 NA promoter-TSS (NM_194322) promoter-TSS (NM_194322) -18 NM_004802 9381 Hs.91608 NM_004802 HPRD:04727 OTOF AUNB1|DFNB6|DFNB9|FER1L2|NSRD9 otoferlin protein-coding 13-PTNLD9-TUMOR_peak_21546 chr17 54067848 54067996 + 6.98680 NA Intergenic Intergenic -162914 NM_153228 162282 Hs.673040 NM_153228 HPRD:08238 ANKFN1 - ankyrin-repeat and fibronectin type III domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_41283 chr5 73697756 73698034 + 6.98680 NA Intergenic L2c|LINE|L2 79584 NR_105010 101929082 Hs.434316 NR_105010 ENSG00000249343 LINC01333 - long intergenic non-protein coding RNA 1333 ncRNA 13-PTNLD9-TUMOR_peak_29841 chr2 219582142 219582237 + 6.98680 NA intron (NM_014640, intron 1 of 19) intron (NM_014640, intron 1 of 19) 6621 NM_014640 9654 Hs.471405 NM_014640 HPRD:15586 TTLL4 - tubulin tyrosine ligase-like family, member 4 protein-coding 13-PTNLD9-TUMOR_peak_22761 chr18 20579166 20579372 + 6.98680 NA intron (NM_203291, intron 14 of 18) MLT1G1|LTR|ERVL-MaLR 65430 NM_203291 5932 Hs.546282 NM_002894 HPRD:04990 RBBP8 COM1|CTIP|JWDS|RIM|SAE2|SCKL2 retinoblastoma binding protein 8 protein-coding 13-PTNLD9-TUMOR_peak_32589 chr21 47010276 47010508 + 6.98680 NA Intergenic CpG -48007 NM_194255 6573 Hs.84190 NM_003056 HPRD:02691 SLC19A1 CHMD|FOLT|IFC1|REFC|RFC1 solute carrier family 19 (folate transporter), member 1 protein-coding 13-PTNLD9-TUMOR_peak_16356 chr14 78869712 78869905 + 6.98680 NA promoter-TSS (NM_004796) promoter-TSS (NM_004796) -266 NM_004796 9369 Hs.368307 NM_004796 NRXN3 C14orf60 neurexin 3 protein-coding 13-PTNLD9-TUMOR_peak_26199 chr2 16581689 16581832 + 6.98680 NA Intergenic Intergenic 265374 NM_030797 81553 Hs.467769 NM_030797 HPRD:07729 FAM49A - family with sequence similarity 49, member A protein-coding 13-PTNLD9-TUMOR_peak_51372 chr8 99847279 99847435 + 6.98680 NA intron (NM_001256312, intron 3 of 12) LTR23|LTR|ERV1 -9448 NM_006281 6788 Hs.492333 NM_006281 HPRD:05433 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 13-PTNLD9-TUMOR_peak_46338 chr6 152154699 152154826 + 6.98680 NA intron (NM_001291230, intron 2 of 8) L2b|LINE|L2 25948 NM_000125 2099 Hs.208124 NM_000125 HPRD:00589 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_17343 chr15 57998685 57998839 + 6.98680 NA promoter-TSS (NM_015532) promoter-TSS (NM_015532) 43 NM_001018102 81488 Hs.437256 NM_015532 HPRD:07575 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 polymerase (RNA) II (DNA directed) polypeptide M protein-coding 13-PTNLD9-TUMOR_peak_20212 chr17 991097 991201 + 6.98680 NA intron (NM_021962, intron 4 of 22) intron (NM_021962, intron 4 of 22) -8763 NM_001282149 29 Hs.159306 NM_001092 HPRD:02649 ABR MDB active BCR-related protein-coding 13-PTNLD9-TUMOR_peak_26572 chr2 36688485 36688726 + 6.98680 NA intron (NM_016441, intron 4 of 16) intron (NM_016441, intron 4 of 16) 105235 NM_016441 51232 Hs.699247 NM_016441 HPRD:08392 CRIM1 CRIM-1|S52 cysteine rich transmembrane BMP regulator 1 (chordin-like) protein-coding 13-PTNLD9-TUMOR_peak_19908 chr16 82687647 82687760 + 6.98680 NA intron (NM_001220488, intron 2 of 14) intron (NM_001220488, intron 2 of 14) 27304 NM_001220488 1012 Hs.654386 NM_001257 HPRD:03219 CDH13 CDHH|P105 cadherin 13 protein-coding 13-PTNLD9-TUMOR_peak_22486 chr18 3771467 3771657 + 6.98680 NA intron (NM_001242764, intron 2 of 9) CpG 73796 NM_001242766 9229 Hs.594640 NM_004746 HPRD:09260 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1|hGKAP discs, large (Drosophila) homolog-associated protein 1 protein-coding 13-PTNLD9-TUMOR_peak_55714 chrX 37706757 37706914 + 6.98680 NA promoter-TSS (NM_006520) promoter-TSS (NM_006520) 54 NM_006520 6990 Hs.446392 NM_006520 HPRD:02249 DYNLT3 RP3|TCTE1L|TCTEX1L dynein, light chain, Tctex-type 3 protein-coding 13-PTNLD9-TUMOR_peak_55084 chr9 140453699 140453793 + 6.98680 NA intron (NM_138778, intron 8 of 8) LTR13|LTR|ERVK 7437 NM_032477 64975 Hs.44017 NM_032477 MRPL41 BMRP|MRP-L27|MRPL27|RPML27 mitochondrial ribosomal protein L41 protein-coding 13-PTNLD9-TUMOR_peak_20308 chr17 4458707 4458826 + 6.98680 NA promoter-TSS (NM_014520) promoter-TSS (NM_014520) -85 NM_001105538 10514 Hs.22824 NM_014520 HPRD:05349 MYBBP1A P160|PAP2 MYB binding protein (P160) 1a protein-coding 13-PTNLD9-TUMOR_peak_19327 chr16 51465608 51465722 + 6.98680 NA Intergenic Intergenic -280482 NM_002968 6299 Hs.135787 NM_002968 HPRD:03742 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt-like transcription factor 1 protein-coding 13-PTNLD9-TUMOR_peak_54758 chr9 127421425 127421673 + 6.98680 NA intron (NR_038975, intron 1 of 1) intron (NR_038975, intron 1 of 1) 834 NR_038975 100379345 Hs.660412 NR_038975 ENSG00000224020 MIR181A2HG - MIR181A2 host gene (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_34835 chr3 64070472 64070599 + 6.98680 NA intron (NR_033978, intron 1 of 3) MLT1I|LTR|ERVL-MaLR 2504 NR_033978 100287879 Hs.452789 NR_033978 ENSG00000189196 LINC00994 - long intergenic non-protein coding RNA 994 ncRNA 13-PTNLD9-TUMOR_peak_21885 chr17 68134130 68134256 + 6.98680 NA Intergenic Intergenic 31350 NR_036534 400617 Hs.225661 NR_036534 ENSG00000267365 KCNJ2-AS1 - KCNJ2 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_29924 chr2 225086426 225086614 + 6.98680 NA Intergenic Intergenic 180191 NM_024785 79843 Hs.147585 NM_024785 HPRD:08663 FAM124B - family with sequence similarity 124B protein-coding 13-PTNLD9-TUMOR_peak_38140 chr4 26344100 26344209 + 6.98680 NA intron (NM_015874, intron 1 of 10) intron (NM_015874, intron 1 of 10) 21725 NM_203284 3516 Hs.479396 NM_005349 HPRD:00920 RBPJ AOS3|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBPJK|RBPSUH|SUH|csl recombination signal binding protein for immunoglobulin kappa J region protein-coding 13-PTNLD9-TUMOR_peak_6915 chr10 34735100 34735284 + 6.98680 NA intron (NM_001184791, intron 4 of 20) intron (NM_001184791, intron 4 of 20) 369061 NM_001184791 56288 Hs.131489 NM_019619 HPRD:05994 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 13-PTNLD9-TUMOR_peak_12246 chr12 15910940 15911061 + 6.98680 NA intron (NM_004447, intron 1 of 20) MLT1G3|LTR|ERVL-MaLR 31510 NM_004447 2059 Hs.591160 NM_004447 HPRD:02563 EPS8 - epidermal growth factor receptor pathway substrate 8 protein-coding 13-PTNLD9-TUMOR_peak_16208 chr14 71642349 71642485 + 6.98680 NA Intergenic Intergenic -222637 NR_001276 319139 NR_001276 ENSG00000207444 SNORD56B RNU56B small nucleolar RNA, C/D box 56B snoRNA 13-PTNLD9-TUMOR_peak_8514 chr10 124228632 124228917 + 6.98680 NA intron (NM_002775, intron 1 of 8) intron (NM_002775, intron 1 of 8) 7733 NM_002775 5654 Hs.501280 NM_002775 HPRD:03725 HTRA1 ARMD7|CARASIL|HtrA|L56|ORF480|PRSS11 HtrA serine peptidase 1 protein-coding 13-PTNLD9-TUMOR_peak_8237 chr10 104597313 104597430 + 6.98680 NA promoter-TSS (NM_000102) promoter-TSS (NM_000102) -81 NM_000102 1586 Hs.438016 NM_000102 HPRD:01944 CYP17A1 CPT7|CYP17|P450C17|S17AH cytochrome P450, family 17, subfamily A, polypeptide 1 protein-coding 13-PTNLD9-TUMOR_peak_4607 chr1 180485090 180485184 + 6.98680 NA Intergenic Intergenic -13115 NM_032360 84320 Hs.200051 NM_032360 HPRD:12416 ACBD6 - acyl-CoA binding domain containing 6 protein-coding 13-PTNLD9-TUMOR_peak_14813 chr13 54784967 54785104 + 6.98680 NA Intergenic MER77|LTR|ERVL -78029 NR_108062 100507428 Hs.351262 NR_108062 ENSG00000234787 LINC00458 LncRNA-ES3 long intergenic non-protein coding RNA 458 ncRNA 13-PTNLD9-TUMOR_peak_48910 chr7 124632935 124633078 + 6.98680 NA intron (NR_125719, intron 2 of 7) intron (NR_125719, intron 2 of 7) -62969 NR_003102 25913 Hs.31968 NM_015450 HPRD:07572 POT1 CMM10|HPOT1 protection of telomeres 1 protein-coding 13-PTNLD9-TUMOR_peak_43921 chr6 15735908 15736137 + 6.98680 NA Intergenic MIR|SINE|MIR -72733 NM_001271669 84062 Hs.571148 NM_032122 HPRD:06190 DTNBP1 BLOC1S8|DBND|HPS7|My031|SDY dystrobrevin binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_12653 chr12 46956634 46956834 + 6.98680 NA intron (NR_125380, intron 3 of 3) L2b|LINE|L2 178844 NR_125381 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 13-PTNLD9-TUMOR_peak_26158 chr2 12418584 12418702 + 6.98680 NA intron (NR_110196, intron 3 of 5) intron (NR_110196, intron 3 of 5) 271401 NR_110196 100506457 Hs.197824 NR_110196 ENSG00000224184 LOC100506457 - uncharacterized LOC100506457 ncRNA 13-PTNLD9-TUMOR_peak_23763 chr19 5985559 5985735 + 6.98680 NA intron (NR_046376, intron 1 of 3) L2c|LINE|L2 7233 NR_046376 100128568 Hs.624525 NR_046376 ENSG00000266983 LOC100128568 - uncharacterized LOC100128568 ncRNA 13-PTNLD9-TUMOR_peak_47352 chr7 44280701 44280807 + 6.98680 NA intron (NM_001293170, intron 11 of 20) intron (NM_001293170, intron 11 of 20) 40176 NM_006555 10652 Hs.520794 NM_006555 HPRD:16205 YKT6 - YKT6 v-SNARE homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_40667 chr5 38854357 38854469 + 6.98680 NA intron (NM_003999, intron 1 of 17) intron (NM_003999, intron 1 of 17) 8312 NM_003999 9180 Hs.120658 NM_003999 HPRD:03446 OSMR OSMRB|PLCA1 oncostatin M receptor protein-coding 13-PTNLD9-TUMOR_peak_55517 chrX 9797777 9797907 + 6.98680 NA intron (NM_001649, intron 1 of 9) MIRc|SINE|MIR 43346 NM_001649 357 Hs.567236 NM_001649 HPRD:02113 SHROOM2 APXL|HSAPXL shroom family member 2 protein-coding 13-PTNLD9-TUMOR_peak_18418 chr16 6976822 6976982 + 6.98680 NA intron (NM_001142334, intron 1 of 13) intron (NM_001142334, intron 1 of 13) 153092 NM_001142334 54715 Hs.459842 NM_018723 HPRD:16091 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding protein, fox-1 homolog (C. elegans) 1 protein-coding 13-PTNLD9-TUMOR_peak_46561 chr6 168931458 168931564 + 6.98680 NA intron (NM_022138, intron 4 of 12) L1ME3B|LINE|L1 89680 NM_001166412 64094 Hs.487200 NM_022138 HPRD:06244 SMOC2 DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1 SPARC related modular calcium binding 2 protein-coding 13-PTNLD9-TUMOR_peak_12055 chr12 8000707 8000801 + 6.98680 NA intron (NM_001286237, intron 1 of 9) intron (NM_001286237, intron 1 of 9) 24881 NM_153449 144195 Hs.655169 NM_153449 HPRD:11573 SLC2A14 GLUT14|SLC2A3P3 solute carrier family 2 (facilitated glucose transporter), member 14 protein-coding 13-PTNLD9-TUMOR_peak_25092 chr19 44455207 44455311 + 6.98680 NA promoter-TSS (NM_013359) promoter-TSS (NM_013359) -116 NM_001297589 7638 Hs.631598 NM_013359 HPRD:10323 ZNF221 - zinc finger protein 221 protein-coding 13-PTNLD9-TUMOR_peak_28444 chr2 131148222 131148598 + 6.98680 NA Intergenic Intergenic 34830 NM_001142370 26469 Hs.516390 NM_014369 HPRD:05961 PTPN18 BDP1|PTP-HSCF protein tyrosine phosphatase, non-receptor type 18 (brain-derived) protein-coding 13-PTNLD9-TUMOR_peak_21575 chr17 55483849 55484130 + 6.98680 NA intron (NM_138962, intron 6 of 13) intron (NM_138962, intron 6 of 13) 116969 NR_110808 101927557 Hs.639984 NR_110808 ENSG00000266100 LOC101927557 - uncharacterized LOC101927557 ncRNA 13-PTNLD9-TUMOR_peak_11602 chr11 128452903 128453043 + 6.98680 NA intron (NM_001143820, intron 1 of 9) MER5A1|DNA|hAT-Charlie 4480 NM_001143820 2113 Hs.369438 NM_005238 HPRD:01260 ETS1 ETS-1|EWSR2|p54 v-ets avian erythroblastosis virus E26 oncogene homolog 1 protein-coding 13-PTNLD9-TUMOR_peak_14684 chr13 44643037 44643147 + 6.98680 NA Intergenic Intergenic -41593 NR_104065 101929212 Hs.534877 NR_104064 SMIM2-AS1 C13orf44-AS1|C3orf81-AS1 SMIM2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_34796 chr3 59545651 59545784 + 6.98680 NA Intergenic MIRb|SINE|MIR -510002 NM_198463 200844 Hs.368434 NM_198463 HPRD:13458 C3orf67 - chromosome 3 open reading frame 67 protein-coding 13-PTNLD9-TUMOR_peak_27059 chr2 64455451 64455653 + 6.98680 NA promoter-TSS (NR_120420) promoter-TSS (NR_120420) 17 NR_120420 100507006 Hs.442789 NR_120420 LOC100507006 - uncharacterized LOC100507006 ncRNA 13-PTNLD9-TUMOR_peak_8571 chr10 127350812 127350920 + 6.98680 NA intron (NM_001128202, intron 1 of 3) intron (NM_001128202, intron 1 of 3) 20847 NM_001128202 387718 Hs.148259 NM_001128202 ENSG00000175018 TEX36 C10orf122|bA383C5.1 testis expressed 36 protein-coding 13-PTNLD9-TUMOR_peak_30316 chr20 3451626 3451747 + 6.98680 NA promoter-TSS (NM_001207047) promoter-TSS (NM_001207047) 21 NM_001207047 8455 Hs.276252 NM_012070 HPRD:04388 ATRN DPPT-L|MGCA attractin protein-coding 13-PTNLD9-TUMOR_peak_39704 chr4 155045795 155045994 + 6.98680 NA Intergenic MLT1A0|LTR|ERVL-MaLR 266555 NM_017639 54798 Hs.655664 NM_017639 HPRD:10858 DCHS2 CDH27|CDHJ|CDHR7|PCDH23|PCDHJ dachsous cadherin-related 2 protein-coding 13-PTNLD9-TUMOR_peak_27048 chr2 63808511 63808697 + 6.98680 NA intron (NM_015910, intron 1 of 17) L1MEc|LINE|L1 -7139 NM_005917 4190 Hs.526521 NM_005917 HPRD:01100 MDH1 HEL-S-32|MDH-s|MDHA|MGC:1375|MOR2 malate dehydrogenase 1, NAD (soluble) protein-coding 13-PTNLD9-TUMOR_peak_53776 chr9 84636237 84636378 + 6.98680 NA Intergenic MLT1H|LTR|ERVL-MaLR 32620 NM_001001670 389763 Hs.209545 NM_001001670 HPRD:13531 SPATA31D1 FAM75D1 SPATA31 subfamily D, member 1 protein-coding 13-PTNLD9-TUMOR_peak_17903 chr15 86211283 86211638 + 6.98680 NA intron (NM_007200, intron 13 of 36) intron (NM_007200, intron 13 of 36) 48279 NM_001270546 11214 Hs.459211 NM_006738 HPRD:05253 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A kinase (PRKA) anchor protein 13 protein-coding 13-PTNLD9-TUMOR_peak_47252 chr7 37706077 37706202 + 6.98680 NA Intergenic Intergenic -73857 NM_181791 353345 Hs.688230 NM_181791 HPRD:16423 GPR141 PGR13 G protein-coupled receptor 141 protein-coding 13-PTNLD9-TUMOR_peak_54322 chr9 109351001 109351138 + 6.98680 NA Intergenic Intergenic -12140 NR_107048 102465995 NR_107048 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 13-PTNLD9-TUMOR_peak_40529 chr5 32028236 32028379 + 6.98680 NA intron (NM_178140, intron 5 of 23) intron (NM_178140, intron 5 of 23) -92042 NR_036241 100422874 NR_036241 miRBase:MI0015887 MIR4279 - microRNA 4279 ncRNA 13-PTNLD9-TUMOR_peak_30410 chr20 10468198 10468328 + 6.98680 NA intron (NM_001009608, intron 2 of 7) intron (NM_001009608, intron 2 of 7) 52312 NM_001009608 128710 Hs.668782 NM_001009608 HPRD:12516 SLX4IP C20orf94|bA204H22.1|bA254M13.1|dJ1099D15.3 SLX4 interacting protein protein-coding 13-PTNLD9-TUMOR_peak_697 chr1 24373663 24373873 + 6.98680 NA Intergenic Intergenic 64897 NM_152372 127294 Hs.523413 NM_152372 HPRD:08200 MYOM3 - myomesin 3 protein-coding 13-PTNLD9-TUMOR_peak_9536 chr11 35326064 35326240 + 6.98680 NA intron (NM_004171, intron 5 of 10) intron (NM_004171, intron 5 of 10) 114953 NM_004171 6506 Hs.502338 NM_004171 HPRD:02625 SLC1A2 EAAT2|GLT-1 solute carrier family 1 (glial high affinity glutamate transporter), member 2 protein-coding 13-PTNLD9-TUMOR_peak_39438 chr4 140719709 140719822 + 6.98680 NA intron (NM_018717, intron 3 of 5) intron (NM_018717, intron 3 of 5) 132843 NM_002413 4258 Hs.81874 NM_002413 HPRD:03436 MGST2 GST2|MGST-II microsomal glutathione S-transferase 2 protein-coding 13-PTNLD9-TUMOR_peak_20853 chr17 31716581 31716912 + 6.98680 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -96740 NM_183377 40 Hs.368417 NM_001094 HPRD:03471 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid-sensing (proton-gated) ion channel 2 protein-coding 13-PTNLD9-TUMOR_peak_40744 chr5 43397253 43397417 + 6.98680 NA intron (NM_148672, intron 1 of 2) CpG 15153 NM_148672 56477 Hs.656904 NM_019846 CCL28 CCK1|MEC|SCYA28 chemokine (C-C motif) ligand 28 protein-coding 13-PTNLD9-TUMOR_peak_15594 chr14 38759951 38760063 + 6.98680 NA Intergenic Intergenic -34432 NM_175060 161198 Hs.525307 NM_175060 HPRD:10711 CLEC14A C14orf27|CEG1|EGFR-5 C-type lectin domain family 14, member A protein-coding 13-PTNLD9-TUMOR_peak_6660 chr10 22894227 22894326 + 6.98680 NA intron (NM_005028, intron 3 of 9) intron (NM_005028, intron 3 of 9) 109227 NM_005028 5305 Hs.57079 NM_005028 HPRD:11931 PIP4K2A PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK phosphatidylinositol-5-phosphate 4-kinase, type II, alpha protein-coding 13-PTNLD9-TUMOR_peak_15984 chr14 62584115 62584237 + 6.98680 NA non-coding (NR_015358, exon 1 of 4) non-coding (NR_015358, exon 1 of 4) 101 NR_015358 646113 Hs.445241 NM_001039785 LINC00643 - long intergenic non-protein coding RNA 643 ncRNA 13-PTNLD9-TUMOR_peak_14088 chr12 121881170 121881269 + 6.98680 NA TTS (NR_106957) TTS (NR_106957) 936 NR_106957 102465665 NR_106957 MIR7107 hsa-mir-7107 microRNA 7107 ncRNA 13-PTNLD9-TUMOR_peak_1063 chr1 35147215 35147356 + 6.98680 NA Intergenic Intergenic -73363 NM_005268 2709 Hs.198249 NM_005268 HPRD:06840 GJB5 CX31.1 gap junction protein, beta 5, 31.1kDa protein-coding 13-PTNLD9-TUMOR_peak_54260 chr9 104138557 104138667 + 6.98680 NA intron (NM_001701, intron 1 of 3) intron (NM_001701, intron 1 of 3) 7189 NM_001127610 570 Hs.284712 NM_001701 HPRD:08376 BAAT BACAT|BAT bile acid CoA:amino acid N-acyltransferase protein-coding 13-PTNLD9-TUMOR_peak_22520 chr18 7627014 7627160 + 6.98680 NA intron (NM_001105244, intron 1 of 32) intron (NM_001105244, intron 1 of 32) 59773 NM_001105244 5797 Hs.49774 NM_002845 HPRD:01479 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase, receptor type, M protein-coding 13-PTNLD9-TUMOR_peak_15908 chr14 59288251 59288393 + 6.98680 NA Intergenic Intergenic -6684 NR_110547 102723742 Hs.232734 NR_110547 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 13-PTNLD9-TUMOR_peak_31228 chr20 44803256 44803401 + 6.98680 NA exon (NM_021248, exon 12 of 12) exon (NM_021248, exon 12 of 12) 56422 NM_152854 958 Hs.472860 NM_001250 HPRD:00178 CD40 Bp50|CDW40|TNFRSF5|p50 CD40 molecule, TNF receptor superfamily member 5 protein-coding 13-PTNLD9-TUMOR_peak_288 chr1 8499099 8499209 + 6.98680 NA intron (NM_012102, intron 12 of 23) intron (NM_012102, intron 12 of 23) -15407 NM_001042682 473 Hs.463041 NM_012102 HPRD:05566 RERE ARG|ARP|ATN1L|DNB1 arginine-glutamic acid dipeptide (RE) repeats protein-coding 13-PTNLD9-TUMOR_peak_34433 chr3 46169145 46169269 + 6.98680 NA Intergenic MLT1B|LTR|ERVL-MaLR 80625 NM_001295 1230 Hs.301921 NM_001295 HPRD:03101 CCR1 CD191|CKR-1|CKR1|CMKBR1|HM145|MIP1aR|SCYAR1 chemokine (C-C motif) receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_38116 chr4 25525109 25525274 + 6.98680 NA Intergenic MIRb|SINE|MIR -132244 NM_001177998 10568 Hs.479372 NM_006424 HPRD:07251 SLC34A2 NAPI-3B|NAPI-IIb|NPTIIb solute carrier family 34 (type II sodium/phosphate contransporter), member 2 protein-coding 13-PTNLD9-TUMOR_peak_21537 chr17 53573820 53573963 + 6.98680 NA Intergenic Intergenic -74550 NM_012329 23531 Hs.463483 NM_012329 HPRD:06835 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation-associated protein-coding 13-PTNLD9-TUMOR_peak_38447 chr4 56502370 56502512 + 6.98680 NA promoter-TSS (NM_001292045) promoter-TSS (NM_001292045) 24 NM_001292045 10874 Hs.418367 NM_006681 HPRD:05485 NMU - neuromedin U protein-coding 13-PTNLD9-TUMOR_peak_54056 chr9 97443909 97444008 + 6.98680 NA Intergenic Intergenic -41427 NM_001127628 2203 Hs.494496 NM_000507 HPRD:01973 FBP1 FBP fructose-1,6-bisphosphatase 1 protein-coding 13-PTNLD9-TUMOR_peak_43570 chr6 4104354 4104469 + 6.98680 NA intron (NR_104464, intron 2 of 5) L3|LINE|CR1 -24954 NM_173563 222826 Hs.657342 NM_173563 HPRD:10789 FAM217A C6orf146 family with sequence similarity 217, member A protein-coding 13-PTNLD9-TUMOR_peak_8561 chr10 126772860 126773068 + 6.98680 NA intron (NM_001290214, intron 2 of 10) intron (NM_001290214, intron 2 of 10) -51525 NR_036178 100423041 NR_036178 MIR4296 - microRNA 4296 ncRNA 13-PTNLD9-TUMOR_peak_31679 chr20 56122474 56122568 + 6.98680 NA Intergenic Intergenic -13616 NM_002591 5105 Hs.1872 NM_002591 HPRD:02028 PCK1 PEPCK-C|PEPCK1|PEPCKC phosphoenolpyruvate carboxykinase 1 (soluble) protein-coding 13-PTNLD9-TUMOR_peak_39923 chr4 182817875 182817980 + 6.98680 NA Intergenic Intergenic 247741 NR_027107 90768 Hs.175465 NM_178838 MGC45800 - uncharacterized LOC90768 ncRNA 13-PTNLD9-TUMOR_peak_12698 chr12 49188691 49188872 + 6.98680 NA Intergenic L2a|LINE|L2 5422 NR_110020 100506125 Hs.306727 NR_110019 ENSG00000257660 LOC100506125 - uncharacterized LOC100506125 ncRNA 13-PTNLD9-TUMOR_peak_28968 chr2 165755125 165755219 + 6.98680 NA exon (NM_173512, exon 10 of 10) exon (NM_173512, exon 10 of 10) -56494 NM_001278460 22837 Hs.470457 NM_014900 HPRD:10844 COBLL1 COBLR1 cordon-bleu WH2 repeat protein-like 1 protein-coding 13-PTNLD9-TUMOR_peak_41103 chr5 66812819 66813060 + 6.98680 NA Intergenic L2c|LINE|L2 -320322 NM_005582 4064 Hs.87205 NM_005582 HPRD:03749 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 13-PTNLD9-TUMOR_peak_32443 chr21 44151489 44151583 + 6.98680 NA intron (NM_001001584, intron 3 of 17) intron (NM_001001584, intron 3 of 17) 77674 NM_001001572 5152 Hs.473927 NM_002606 HPRD:09115 PDE9A HSPDE9A2 phosphodiesterase 9A protein-coding 13-PTNLD9-TUMOR_peak_24543 chr19 24097604 24097711 + 6.98680 NA promoter-TSS (NM_001244038) promoter-TSS (NM_001244038) -27 NM_001244038 730087 Hs.655305 NM_001190829 ZNF726 - zinc finger protein 726 protein-coding 13-PTNLD9-TUMOR_peak_28856 chr2 160003819 160003987 + 6.98680 NA intron (NM_001145909, intron 5 of 26) intron (NM_001145909, intron 5 of 26) -39443 NR_106948 102465535 NR_106948 MIR6888 hsa-mir-6888 microRNA 6888 ncRNA 13-PTNLD9-TUMOR_peak_16609 chr14 102653554 102653653 + 6.98680 NA intron (NM_001242418, intron 1 of 2) intron (NM_001242418, intron 1 of 2) 47414 NM_001242416 91833 Hs.36859 NM_144574 HPRD:11679 WDR20 DMR WD repeat domain 20 protein-coding 13-PTNLD9-TUMOR_peak_51338 chr8 96570290 96570402 + 6.98680 NA intron (NR_038207, intron 2 of 2) L1PA2|LINE|L1 -288884 NM_177965 157657 Hs.548157 NM_177965 HPRD:14104 C8orf37 CORD16|RP64|smalltalk chromosome 8 open reading frame 37 protein-coding 13-PTNLD9-TUMOR_peak_53143 chr9 36008947 36009064 + 6.98680 NA Intergenic L2c|LINE|L2 -27905 NM_021111 8434 Hs.388918 NM_021111 HPRD:05567 RECK ST15 reversion-inducing-cysteine-rich protein with kazal motifs protein-coding 13-PTNLD9-TUMOR_peak_41852 chr5 120609907 120610007 + 6.98680 NA Intergenic LTR72|LTR|ERV1 -48288 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 13-PTNLD9-TUMOR_peak_30177 chr2 241172475 241172601 + 6.98680 NA Intergenic Intergenic -92465 NM_148961 150677 Hs.148586 NM_148961 HPRD:09714 OTOS OTOSP otospiralin protein-coding 13-PTNLD9-TUMOR_peak_47157 chr7 30016453 30016602 + 6.98680 NA intron (NM_001145514, intron 1 of 7) intron (NM_001145514, intron 1 of 7) 12898 NM_001145515 9805 Hs.520740 NM_014766 HPRD:15304 SCRN1 SES1 secernin 1 protein-coding 13-PTNLD9-TUMOR_peak_842 chr1 28293393 28293504 + 6.98680 NA exon (NM_018053, exon 3 of 3) exon (NM_018053, exon 3 of 3) 6944 NM_018053 55113 Hs.55024 NM_018053 HPRD:07661 XKR8 XRG8|hXkr8 XK, Kell blood group complex subunit-related family, member 8 protein-coding 13-PTNLD9-TUMOR_peak_40559 chr5 33272453 33272656 + 6.98680 NA Intergenic Intergenic -168248 NM_001258437 6897 Hs.481860 NM_152295 HPRD:01762 TARS ThrRS threonyl-tRNA synthetase protein-coding 13-PTNLD9-TUMOR_peak_13995 chr12 118675857 118675983 + 6.98680 NA exon (NM_016281, exon 7 of 21) exon (NM_016281, exon 7 of 21) 102050 NM_002567 5037 Hs.433863 NM_002567 HPRD:06850 PEBP1 HCNP|HCNPpp|HEL-210|HEL-S-34|PBP|PEBP|PEBP-1|RKIP phosphatidylethanolamine binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_51199 chr8 81639834 81639937 + 6.98680 NA intron (NM_001033723, intron 2 of 8) intron (NM_001033723, intron 2 of 8) 147131 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 13-PTNLD9-TUMOR_peak_34377 chr3 44146511 44146625 + 6.98680 NA Intergenic Intergenic -9136 NR_029700 406929 NR_029700 miRBase:MI0000476 MIR138-1 MIRN138-1 microRNA 138-1 ncRNA 13-PTNLD9-TUMOR_peak_46873 chr7 7606356 7606645 + 6.98680 NA promoter-TSS (NM_019005) promoter-TSS (NM_019005) -116 NM_019005 54468 Hs.520215 NM_019005 HPRD:07898 MIOS - missing oocyte, meiosis regulator, homolog (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_17751 chr15 79223352 79223548 + 6.98680 NA intron (NM_004390, intron 7 of 11) intron (NM_004390, intron 7 of 11) 13970 NM_004390 1512 Hs.148641 NM_004390 CTSH ACC-4|ACC-5|CPSB|minichain cathepsin H protein-coding 13-PTNLD9-TUMOR_peak_10860 chr11 87162573 87162705 + 6.98680 NA Intergenic Intergenic 413753 NR_033149 65084 Hs.188591 NM_022918 TMEM135 PMP52 transmembrane protein 135 protein-coding 13-PTNLD9-TUMOR_peak_54776 chr9 128284106 128284233 + 6.98680 NA intron (NM_001006618, intron 7 of 7) intron (NM_001006618, intron 7 of 7) 185344 NM_001006619 79109 Hs.495138 NM_024117 HPRD:17464 MAPKAP1 JC310|MIP1|SIN1|SIN1b|SIN1g mitogen-activated protein kinase associated protein 1 protein-coding 13-PTNLD9-TUMOR_peak_752 chr1 26496307 26496422 + 6.98680 NA promoter-TSS (NM_015871) promoter-TSS (NM_015871) -24 NM_015871 51042 Hs.477273 NM_015871 ZNF593 ZT86 zinc finger protein 593 protein-coding 13-PTNLD9-TUMOR_peak_42948 chr5 169532729 169532862 + 6.98680 NA promoter-TSS (NM_012188) promoter-TSS (NM_012188) -122 NM_012188 2299 Hs.87236 NM_012188 HPRD:03057 FOXI1 FKH10|FKHL10|FREAC-6|FREAC6|HFH-3|HFH3 forkhead box I1 protein-coding 13-PTNLD9-TUMOR_peak_51130 chr8 71158900 71159011 + 6.98680 NA intron (NM_006540, intron 2 of 22) L1MB2|LINE|L1 157065 NM_006540 10499 Hs.446678 NM_006540 HPRD:09066 NCOA2 GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75 nuclear receptor coactivator 2 protein-coding 13-PTNLD9-TUMOR_peak_18621 chr16 15906102 15906214 + 6.98680 NA intron (NM_002474, intron 3 of 40) intron (NM_002474, intron 3 of 40) 44729 NM_001040114 4629 Hs.460109 NM_002474 HPRD:01174 MYH11 AAT4|FAA4|SMHC|SMMHC myosin, heavy chain 11, smooth muscle protein-coding 13-PTNLD9-TUMOR_peak_56971 chrY 15247837 15247990 + 6.98680 NA Intergenic L1PA3|LINE|L1 231214 NM_004660 8653 Hs.99120 NM_004660 HPRD:02452 DDX3Y DBY DEAD (Asp-Glu-Ala-Asp) box helicase 3, Y-linked protein-coding 13-PTNLD9-TUMOR_peak_32010 chr21 22984947 22985072 + 6.98680 NA Intergenic Intergenic 124630 NR_038872 378828 Hs.551009 NR_038872 ENSG00000238265 LINC00317 C21orf117|NCRNA00317|PRED89 long intergenic non-protein coding RNA 317 ncRNA 13-PTNLD9-TUMOR_peak_45299 chr6 52680433 52680550 + 6.98680 NA Intergenic Intergenic -11827 NM_145740 2938 Hs.446309 NM_145740 GSTA1 GST2|GSTA1-1|GTH1 glutathione S-transferase alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_20672 chr17 21185700 21185816 + 6.98680 NA Intergenic L2c|LINE|L2 -2210 NM_145109 5606 Hs.514012 NM_002756 HPRD:03816 MAP2K3 MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2 mitogen-activated protein kinase kinase 3 protein-coding 13-PTNLD9-TUMOR_peak_8163 chr10 101908500 101908687 + 6.98680 NA Intergenic Intergenic 37141 NM_006459 10613 Hs.150087 NM_006459 ERLIN1 C10orf69|Erlin-1|KE04|KEO4|SPFH1|SPG62 ER lipid raft associated 1 protein-coding 13-PTNLD9-TUMOR_peak_17004 chr15 34531671 34531765 + 6.98680 NA intron (NM_001042495, intron 19 of 25) intron (NM_001042495, intron 19 of 25) 14520 NM_001286420 51234 Hs.250905 NM_016454 HPRD:14233 EMC4 PIG17|TMEM85 ER membrane protein complex subunit 4 protein-coding 13-PTNLD9-TUMOR_peak_32381 chr21 42655286 42655396 + 6.98680 NA TTS (NM_138992) TTS (NM_138992) -33320 NM_058186 54097 Hs.473877 NM_058186 FAM3B 2-21|C21orf11|C21orf76|ORF9|PANDER family with sequence similarity 3, member B protein-coding 13-PTNLD9-TUMOR_peak_11073 chr11 103304225 103304359 + 6.98680 NA intron (NM_001080463, intron 85 of 89) MLT1F2|LTR|ERVL-MaLR 324132 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein, cytoplasmic 2, heavy chain 1 protein-coding 13-PTNLD9-TUMOR_peak_20001 chr16 85925056 85925228 + 6.98680 NA Intergenic Intergenic -7632 NM_002163 3394 Hs.137427 NM_002163 HPRD:03336 IRF8 H-ICSBP|ICSBP|ICSBP1|IRF-8 interferon regulatory factor 8 protein-coding 13-PTNLD9-TUMOR_peak_51254 chr8 87127460 87127627 + 6.98680 NA intron (NM_152565, intron 2 of 7) intron (NM_152565, intron 2 of 7) 16404 NM_152565 245972 Hs.436360 NM_152565 HPRD:16522 ATP6V0D2 ATP6D2|VMA6 ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d2 protein-coding 13-PTNLD9-TUMOR_peak_21141 chr17 41890875 41891002 + 6.98680 NA intron (NR_003562, intron 15 of 18) intron (NR_003562, intron 15 of 18) 19609 NM_001932 4356 Hs.396566 NM_001932 HPRD:03069 MPP3 DLG3 membrane protein, palmitoylated 3 (MAGUK p55 subfamily member 3) protein-coding 13-PTNLD9-TUMOR_peak_12087 chr12 8771788 8771996 + 6.98680 NA Intergenic LTR24B|LTR|ERV1 -6450 NM_020661 57379 Hs.149342 NM_020661 HPRD:05585 AICDA AID|ARP2|CDA2|HEL-S-284|HIGM2 activation-induced cytidine deaminase protein-coding 13-PTNLD9-TUMOR_peak_14491 chr13 29267923 29268039 + 6.98680 NA Intergenic L1PA7|LINE|L1 25169 NM_001135919 283537 Hs.117167 NM_181785 HPRD:14146 SLC46A3 FKSG16 solute carrier family 46, member 3 protein-coding 13-PTNLD9-TUMOR_peak_11226 chr11 112226682 112226791 + 6.98680 NA Intergenic Intergenic -95153 NM_001145024 349633 Hs.632097 NM_001145024 ENSG00000188771 PLET1 C11orf34 placenta expressed transcript 1 protein-coding 13-PTNLD9-TUMOR_peak_42426 chr5 142035378 142035472 + 6.98680 NA intron (NM_001144935, intron 1 of 3) intron (NM_001144935, intron 1 of 3) -11559 NM_001257210 2246 Hs.483635 NM_000800 HPRD:00567 FGF1 AFGF|ECGF|ECGF-beta|ECGFA|ECGFB|FGF-1|FGF-alpha|FGFA|GLIO703|HBGF-1|HBGF1 fibroblast growth factor 1 (acidic) protein-coding 13-PTNLD9-TUMOR_peak_19390 chr16 55808159 55808329 + 6.98680 NA non-coding (NR_003276, exon 6 of 6) non-coding (NR_003276, exon 6 of 6) 13733 NR_003276 51716 Hs.721645 NM_016280 HPRD:07009 CES1P1 CES1A2|CES1A3|CES4|CESR|PCE-3 carboxylesterase 1 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_4649 chr1 181753491 181753653 + 6.98680 NA intron (NM_001205293, intron 40 of 47) intron (NM_001205293, intron 40 of 47) 277275 NM_001009992 127665 Hs.684328 NM_001009992 HPRD:18361 ZNF648 - zinc finger protein 648 protein-coding 13-PTNLD9-TUMOR_peak_55566 chrX 14692025 14692157 + 6.98680 NA intron (NM_002063, intron 7 of 8) intron (NM_002063, intron 7 of 8) 144671 NM_002063 2742 Hs.2700 NM_002063 HPRD:02379 GLRA2 GLR glycine receptor, alpha 2 protein-coding 13-PTNLD9-TUMOR_peak_46453 chr6 160228257 160228491 + 6.98680 NA intron (NM_173516, intron 7 of 18) FLAM_C|SINE|Alu 7093 NM_001271862 154197 Hs.349077 NM_173516 HPRD:17868 PNLDC1 - poly(A)-specific ribonuclease (PARN)-like domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_9154 chr11 13992636 13992750 + 6.98680 NA intron (NM_006108, intron 1 of 15) intron (NM_006108, intron 1 of 15) 8509 NM_006108 10418 Hs.643864 NM_006108 SPON1 VSGP/F-spondin|f-spondin spondin 1, extracellular matrix protein protein-coding 13-PTNLD9-TUMOR_peak_8144 chr10 100227357 100227453 + 6.98680 NA intron (NM_001166246, intron 11 of 12) intron (NM_001166246, intron 11 of 12) -20701 NM_000195 3257 Hs.404568 NM_000195 HPRD:05403 HPS1 HPS Hermansky-Pudlak syndrome 1 protein-coding 13-PTNLD9-TUMOR_peak_27282 chr2 73857949 73858057 + 6.98680 NA Intergenic Intergenic 11534 NM_003960 9027 Hs.14637 NM_003960 HPRD:08413 NAT8 ATase2|CML1|GLA|Hcml1|TSC501|TSC510 N-acetyltransferase 8 (GCN5-related, putative) protein-coding 13-PTNLD9-TUMOR_peak_20827 chr17 30002080 30002323 + 6.98680 NA Intergenic MER5B|DNA|hAT-Charlie 99771 NR_029856 100126356 NR_029856 miRBase:MI0000769 MIR365B MIR365-2|MIRN365-2|hsa-mir-365b microRNA 365b ncRNA 13-PTNLD9-TUMOR_peak_56340 chrX 109195374 109195510 + 6.98680 NA Intergenic Intergenic -50421 NM_017698 84187 Hs.496572 NM_017698 HPRD:06539 TMEM164 bB360B22.3 transmembrane protein 164 protein-coding 13-PTNLD9-TUMOR_peak_12487 chr12 33109613 33109712 + 6.98680 NA Intergenic L1PA4|LINE|L1 -59882 NM_001005242 5318 Hs.164384 NM_004572 HPRD:04177 PKP2 ARVD9 plakophilin 2 protein-coding 13-PTNLD9-TUMOR_peak_15618 chr14 42132760 42132942 + 6.98680 NA intron (NM_152447, intron 1 of 5) intron (NM_152447, intron 1 of 5) 56087 NM_152447 145581 Hs.136893 NM_152447 HPRD:17445 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 13-PTNLD9-TUMOR_peak_45337 chr6 53457922 53458252 + 6.98680 NA Intergenic Intergenic -20014 NR_110840 101927136 Hs.509788 NR_110840 ENSG00000231683 LOC101927136 - uncharacterized LOC101927136 ncRNA 13-PTNLD9-TUMOR_peak_27162 chr2 68906628 68906749 + 6.98680 NA Intergenic L1PA3|LINE|L1 33734 NM_138964 10887 Hs.683430 NM_138964 HPRD:08452 PROKR1 GPR73|GPR73a|PKR1|ZAQ prokineticin receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_24224 chr19 15376785 15376970 + 6.98680 NA intron (NM_014299, intron 4 of 11) intron (NM_014299, intron 4 of 11) 14385 NM_014299 23476 Hs.187763 NM_014299 HPRD:10574 BRD4 CAP|HUNK1|HUNKI|MCAP bromodomain containing 4 protein-coding 13-PTNLD9-TUMOR_peak_7664 chr10 72937494 72937762 + 6.98680 NA Intergenic Intergenic -34664 NM_001244889 219699 Hs.522997 NM_170744 HPRD:08487 UNC5B UNC5H2|p53RDL1 unc-5 homolog B (C. elegans) protein-coding 13-PTNLD9-TUMOR_peak_47363 chr7 44570641 44570768 + 6.98680 NA intron (NM_001101648, intron 10 of 18) intron (NM_001101648, intron 10 of 18) 10210 NM_001300967 29881 Hs.567486 NM_013389 HPRD:09725 NPC1L1 NPC11L1 NPC1-like 1 protein-coding 13-PTNLD9-TUMOR_peak_26049 chr2 9473876 9474009 + 6.98680 NA intron (NM_003887, intron 7 of 27) intron (NM_003887, intron 7 of 27) 89701 NM_004763 9270 Hs.467662 NM_004763 HPRD:06194 ITGB1BP1 ICAP-1A|ICAP-1B|ICAP-1alpha|ICAP1|ICAP1A|ICAP1B integrin beta 1 binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_41420 chr5 80564747 80564895 + 6.98680 NA intron (NR_034122, intron 1 of 3) intron (NR_034122, intron 1 of 3) 32567 NR_034122 100131067 Hs.655855 NR_034121 ENSG00000247572 CKMT2-AS1 - CKMT2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_6651 chr10 22535587 22535694 + 6.98680 NA Intergenic L2b|LINE|L2 -5361 NR_038921 100130992 Hs.48501 NR_038921 LOC100130992 - uncharacterized LOC100130992 ncRNA 13-PTNLD9-TUMOR_peak_30345 chr20 4230289 4230383 + 6.98680 NA promoter-TSS (NM_000678) promoter-TSS (NM_000678) -677 NM_000678 146 Hs.557 NM_000678 HPRD:00079 ADRA1D ADRA1|ADRA1A|ADRA1R|ALPHA1|DAR|dJ779E11.2 adrenoceptor alpha 1D protein-coding 13-PTNLD9-TUMOR_peak_2851 chr1 112114758 112114857 + 6.98680 NA Intergenic Intergenic -8210 NM_001081976 140 Hs.281342 NM_000677 HPRD:08984 ADORA3 A3AR|AD026|bA552M11.5 adenosine A3 receptor protein-coding 13-PTNLD9-TUMOR_peak_46505 chr6 165623259 165623621 + 6.98680 NA Intergenic Intergenic 99671 NM_144980 168090 Hs.144734 NM_144980 HPRD:12844 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 13-PTNLD9-TUMOR_peak_41887 chr5 123712460 123712617 + 6.98680 NA intron (NR_125774, intron 4 of 5) MARNA|DNA|TcMar-Mariner 61675 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 13-PTNLD9-TUMOR_peak_20461 chr17 9292550 9292741 + 6.98680 NA intron (NM_004853, intron 6 of 7) intron (NM_004853, intron 6 of 7) 186630 NM_004853 9482 Hs.431109 NM_004853 STX8 CARB syntaxin 8 protein-coding 13-PTNLD9-TUMOR_peak_37741 chr4 5397298 5397498 + 6.98680 NA intron (NM_018401, intron 4 of 11) L2b|LINE|L2 -129485 NM_005750 10141 Hs.177972 NM_005750 HPRD:12826 C4orf6 aC1 chromosome 4 open reading frame 6 protein-coding 13-PTNLD9-TUMOR_peak_14675 chr13 43632543 43632684 + 6.98680 NA intron (NM_013238, intron 1 of 5) L1PB1|LINE|L1 35251 NM_013238 29103 Hs.438830 NM_013238 HPRD:13238 DNAJC15 DNAJD1|HSD18|MCJ DnaJ (Hsp40) homolog, subfamily C, member 15 protein-coding 13-PTNLD9-TUMOR_peak_14326 chr12 131752790 131752925 + 6.98680 NA Intergenic Intergenic -79158 NR_103736 338797 Hs.592007 NM_001025466 LOC338797 - uncharacterized LOC338797 ncRNA 13-PTNLD9-TUMOR_peak_14262 chr12 125994640 125994749 + 6.98680 NA intron (NM_052907, intron 3 of 8) intron (NM_052907, intron 3 of 8) -112304 NM_001286219 114795 Hs.524838 NM_052907 TMEM132B - transmembrane protein 132B protein-coding 13-PTNLD9-TUMOR_peak_34799 chr3 60574716 60574810 + 6.98680 NA intron (NM_001166243, intron 4 of 9) intron (NM_001166243, intron 4 of 9) 662370 NM_002012 2272 Hs.655995 NM_002012 HPRD:03096 FHIT AP3Aase|FRA3B fragile histidine triad protein-coding 13-PTNLD9-TUMOR_peak_17373 chr15 59821140 59821339 + 6.98680 NA Intergenic Intergenic -82743 NM_004751 9245 Hs.194710 NM_004751 HPRD:06018 GCNT3 C2/4GnT|C24GNT|C2GNT2|C2GNTM|GNTM glucosaminyl (N-acetyl) transferase 3, mucin type protein-coding 13-PTNLD9-TUMOR_peak_12974 chr12 56349965 56350061 + 6.98680 NA intron (NM_006928, intron 7 of 11) intron (NM_006928, intron 7 of 11) 9833 NM_001200054 6490 Hs.95972 NM_006928 HPRD:01117 PMEL D12S53E|ME20|ME20-M|ME20M|P1|P100|PMEL17|SI|SIL|SILV|gp100 premelanosome protein protein-coding 13-PTNLD9-TUMOR_peak_41559 chr5 95748903 95749044 + 6.98680 NA intron (NM_001177875, intron 6 of 13) intron (NM_001177875, intron 6 of 13) 18890 NM_001177875 5122 Hs.78977 NM_000439 HPRD:01201 PCSK1 BMIQ12|NEC1|PC1|PC3|SPC3 proprotein convertase subtilisin/kexin type 1 protein-coding 13-PTNLD9-TUMOR_peak_30037 chr2 233931990 233932153 + 6.98680 NA intron (NM_001017915, intron 1 of 25) L1MB7|LINE|L1 7394 NM_005541 3635 Hs.262886 NM_005541 HPRD:09033 INPP5D SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship inositol polyphosphate-5-phosphatase, 145kDa protein-coding 13-PTNLD9-TUMOR_peak_14636 chr13 41082359 41082507 + 6.98680 NA Intergenic Intergenic -27290 NR_024505 646982 Hs.287664 NR_024505 LINC00598 TTL long intergenic non-protein coding RNA 598 ncRNA 13-PTNLD9-TUMOR_peak_14466 chr13 27617281 27617420 + 6.98680 NA Intergenic Intergenic -82320 NR_046547 100874070 Hs.524923 NR_046547 USP12-AS1 - USP12 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_55492 chrX 3450682 3450835 + 6.98680 NA Intergenic LTR43|LTR|ERV1 -126770 NR_046643 100873944 NR_046643 PRKX-AS1 - PRKX antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_50135 chr8 15646640 15646781 + 6.98680 NA Intergenic Intergenic 249114 NM_178234 7991 Hs.426324 NM_006765 HPRD:03228 TUSC3 D8S1992|M33|MRT22|MRT7|N33|OST3A tumor suppressor candidate 3 protein-coding 13-PTNLD9-TUMOR_peak_18332 chr16 3577392 3577610 + 6.98680 NA intron (NM_024793, intron 5 of 7) LTR13|LTR|ERVK 17607 NM_024793 23059 Hs.155995 NM_015041 HPRD:10013 CLUAP1 CFAP22|FAP22 clusterin associated protein 1 protein-coding 13-PTNLD9-TUMOR_peak_12441 chr12 31644810 31644914 + 6.98680 NA intron (NM_144973, intron 2 of 20) intron (NM_144973, intron 2 of 20) -97995 NR_046909 100874249 Hs.627628 NR_046909 ENSG00000255867 DENND5B-AS1 - DENND5B antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_30260 chr20 1396741 1396845 + 6.98680 NA Intergenic L2c|LINE|L2 -22977 NM_000801 2280 Hs.471933 NM_000801 HPRD:01741 FKBP1A FKBP-12|FKBP-1A|FKBP1|FKBP12|PKC12|PKCI2|PPIASE FK506 binding protein 1A, 12kDa protein-coding 13-PTNLD9-TUMOR_peak_11420 chr11 120039942 120040053 + 6.98680 NA Intergenic CpG -31134 NM_012101 23650 Hs.504115 NM_012101 HPRD:10280 TRIM29 ATDC tripartite motif containing 29 protein-coding 13-PTNLD9-TUMOR_peak_52754 chr9 13388230 13388412 + 6.98680 NA Intergenic Intergenic 43007 NR_033863 401492 Hs.632651 NR_033863 ENSG00000270547 LINC01235 - long intergenic non-protein coding RNA 1235 ncRNA 13-PTNLD9-TUMOR_peak_7855 chr10 80944014 80944122 + 6.98680 NA intron (NM_020338, intron 4 of 24) intron (NM_020338, intron 4 of 24) 115276 NM_020338 57178 Hs.193118 NM_020338 HPRD:12115 ZMIZ1 MIZ|RAI17|TRAFIP10|ZIMP10|hZIMP10 zinc finger, MIZ-type containing 1 protein-coding 13-PTNLD9-TUMOR_peak_41815 chr5 115777825 115778075 + 6.98680 NA Intergenic Intergenic -5244 NR_109879 101927233 Hs.732850 NR_109879 SEMA6A-AS1 CTB-118N6.3 SEMA6A antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_46938 chr7 17134656 17135008 + 6.98680 NA Intergenic Intergenic -203444 NM_001621 196 Hs.171189 NM_001621 HPRD:02596 AHR bHLHe76 aryl hydrocarbon receptor protein-coding 13-PTNLD9-TUMOR_peak_17367 chr15 59397244 59397340 + 6.98680 NA promoter-TSS (NM_004701) promoter-TSS (NM_004701) 8 NM_004701 9133 Hs.194698 NM_004701 HPRD:04131 CCNB2 HsT17299 cyclin B2 protein-coding 13-PTNLD9-TUMOR_peak_7767 chr10 75725947 75726117 + 6.98680 NA Intergenic Intergenic -31840 NM_003373 7414 Hs.643896 NM_003373 HPRD:01900 VCL CMD1W|CMH15|HEL114|MV|MVCL vinculin protein-coding 13-PTNLD9-TUMOR_peak_17244 chr15 48116560 48116752 + 6.98680 NA intron (NR_120336, intron 3 of 4) intron (NR_120336, intron 3 of 4) 21777 NR_120336 101928442 Hs.242804 NR_120336 LINC01491 - long intergenic non-protein coding RNA 1491 ncRNA 13-PTNLD9-TUMOR_peak_14255 chr12 125498509 125498621 + 6.98680 NA intron (NM_080626, intron 2 of 2) intron (NM_080626, intron 2 of 2) 13404 NR_110375 102659353 Hs.596464 NR_110375 THRIL BRI3BP-AS1|BRI3BPAS1|Linc1992|TCONS_00020260 TNF and HNRNPL related immunoregulatory long non-coding RNA ncRNA 13-PTNLD9-TUMOR_peak_48797 chr7 107695054 107695234 + 6.98680 NA intron (NM_007356, intron 25 of 33) MER58A|DNA|hAT-Charlie -51340 NM_002291 3912 Hs.650585 NM_002291 HPRD:01029 LAMB1 CLM|LIS5 laminin, beta 1 protein-coding 13-PTNLD9-TUMOR_peak_5319 chr1 208281636 208281774 + 6.98680 NA intron (NM_025179, intron 4 of 31) intron (NM_025179, intron 4 of 31) 135960 NM_025179 5362 Hs.497626 NM_025179 HPRD:03033 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 13-PTNLD9-TUMOR_peak_6826 chr10 30574238 30574332 + 6.98680 NA Intergenic Intergenic 63982 NM_018109 55149 Hs.173946 NM_018109 HPRD:15097 MTPAP PAPD1|SPAX4 mitochondrial poly(A) polymerase protein-coding 13-PTNLD9-TUMOR_peak_25177 chr19 46571909 46572124 + 6.98680 NA intron (NR_125344, intron 1 of 1) intron (NR_125344, intron 1 of 1) 8871 NR_125344 400706 Hs.630811 NR_125344 LOC400706 - uncharacterized LOC400706 ncRNA 13-PTNLD9-TUMOR_peak_54777 chr9 128300378 128300643 + 6.98680 NA intron (NM_001006618, intron 7 of 7) L2|LINE|L2 169003 NM_001006619 79109 Hs.495138 NM_024117 HPRD:17464 MAPKAP1 JC310|MIP1|SIN1|SIN1b|SIN1g mitogen-activated protein kinase associated protein 1 protein-coding 13-PTNLD9-TUMOR_peak_9125 chr11 13132692 13132795 + 6.98680 NA Intergenic Intergenic 101773 NM_001080521 644943 Hs.134650 NM_001080521 RASSF10 - Ras association (RalGDS/AF-6) domain family (N-terminal) member 10 protein-coding 13-PTNLD9-TUMOR_peak_39770 chr4 159795073 159795492 + 6.98680 NA intron (NM_020840, intron 14 of 16) MIRc|SINE|MIR 105100 NM_020840 57600 Hs.652441 NM_020840 ENSG00000052795 FNIP2 FNIPL|MAPO1 folliculin interacting protein 2 protein-coding 13-PTNLD9-TUMOR_peak_15230 chr14 20638128 20638268 + 6.98680 NA Intergenic AluJo|SINE|Alu 26303 NM_001004724 390437 Hs.553766 NM_001004724 HPRD:14985 OR4N5 - olfactory receptor, family 4, subfamily N, member 5 protein-coding 13-PTNLD9-TUMOR_peak_28834 chr2 158917669 158917777 + 6.98680 NA intron (NM_001135098, intron 2 of 8) MIR3|SINE|MIR -40659 NM_173355 151531 Hs.128427 NM_173355 HPRD:15627 UPP2 UDRPASE2|UP2|UPASE2 uridine phosphorylase 2 protein-coding 13-PTNLD9-TUMOR_peak_23086 chr18 45305860 45306033 + 6.98680 NA Intergenic Intergenic 151024 NM_005901 4087 Hs.12253 NM_005901 HPRD:03221 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding 13-PTNLD9-TUMOR_peak_26084 chr2 10212848 10213009 + 6.98680 NA intron (NM_001037160, intron 1 of 2) intron (NM_001037160, intron 1 of 2) 7610 NM_001037160 192668 Hs.27092 NM_001037160 HPRD:18744 CYS1 - cystin 1 protein-coding 13-PTNLD9-TUMOR_peak_16540 chr14 98397682 98397836 + 6.98680 NA intron (NR_015430, intron 2 of 2) L2c|LINE|L2 46702 NR_015430 388011 Hs.651477 NR_015430 ENSG00000246223 C14orf64 - chromosome 14 open reading frame 64 ncRNA 13-PTNLD9-TUMOR_peak_15629 chr14 44067570 44067664 + 6.98680 NA Intergenic L1PA2|LINE|L1 908882 NM_032135 84075 Hs.307086 NM_032135 HPRD:12638 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 13-PTNLD9-TUMOR_peak_45367 chr6 55623446 55623618 + 6.98680 NA intron (NM_021073, intron 6 of 6) intron (NM_021073, intron 6 of 6) 116843 NM_021073 653 Hs.296648 NM_021073 HPRD:00210 BMP5 - bone morphogenetic protein 5 protein-coding 13-PTNLD9-TUMOR_peak_16293 chr14 75867016 75867285 + 6.98680 NA Intergenic Intergenic -27359 NM_001135047 122953 Hs.196482 NM_130469 HPRD:16360 JDP2 JUNDM2 Jun dimerization protein 2 protein-coding 13-PTNLD9-TUMOR_peak_10443 chr11 69235423 69235559 + 6.98680 NA Intergenic Intergenic -64838 NR_120543 101928292 Hs.736219 NR_120542 LINC01488 - long intergenic non-protein coding RNA 1488 ncRNA 13-PTNLD9-TUMOR_peak_46532 chr6 167544706 167544824 + 6.98680 NA intron (NM_031409, intron 1 of 2) intron (NM_031409, intron 1 of 2) 8524 NM_031409 1235 Hs.46468 NM_004367 HPRD:03498 CCR6 BN-1|C-C CKR-6|CC-CKR-6|CCR-6|CD196|CKR-L3|CKRL3|CMKBR6|DCR2|DRY6|GPR29|GPRCY4|STRL22 chemokine (C-C motif) receptor 6 protein-coding 13-PTNLD9-TUMOR_peak_1007 chr1 33190900 33191025 + 6.98680 NA Intergenic Intergenic -16550 NM_020888 57648 Hs.591502 NM_020888 ENSG00000162522 KIAA1522 - KIAA1522 protein-coding 13-PTNLD9-TUMOR_peak_22240 chr17 78807084 78807211 + 6.98680 NA intron (NM_020761, intron 9 of 33) intron (NM_020761, intron 9 of 33) -27715 NR_110852 101928855 Hs.670692 NR_110852 ENSG00000262833 LOC101928855 - uncharacterized LOC101928855 ncRNA 13-PTNLD9-TUMOR_peak_48666 chr7 102618821 102618922 + 6.98680 NA intron (NR_105043, intron 7 of 20) MER48|LTR|ERV1 65527 NM_001031692 10234 Hs.567412 NM_005824 HPRD:10059 LRRC17 P37NB leucine rich repeat containing 17 protein-coding 13-PTNLD9-TUMOR_peak_19502 chr16 62170027 62170122 + 6.98680 NA Intergenic LTR16A|LTR|ERVL -99335 NM_001796 1006 Hs.368322 NM_001796 HPRD:04306 CDH8 Nbla04261 cadherin 8, type 2 protein-coding 13-PTNLD9-TUMOR_peak_1366 chr1 41951423 41951614 + 6.98680 NA Intergenic Intergenic -1174 NM_001956 1907 Hs.1407 NM_001956 HPRD:07173 EDN2 ET2|PPET2 endothelin 2 protein-coding 13-PTNLD9-TUMOR_peak_32159 chr21 34383912 34384080 + 6.98680 NA Intergenic Intergenic -14220 NM_005806 10215 Hs.176977 NM_005806 HPRD:07334 OLIG2 BHLHB1|OLIGO2|PRKCBP2|RACK17|bHLHe19 oligodendrocyte lineage transcription factor 2 protein-coding 13-PTNLD9-TUMOR_peak_53652 chr9 76198657 76198753 + 6.98680 NA Intergenic Intergenic 431924 NM_000700 301 Hs.494173 NM_000700 HPRD:01060 ANXA1 ANX1|LPC1 annexin A1 protein-coding 13-PTNLD9-TUMOR_peak_31076 chr20 39778502 39778607 + 6.98680 NA intron (NM_182811, intron 1 of 31) AluJb|SINE|Alu -11914 NR_109889 101927117 Hs.668593 NR_109889 ENSG00000226648 PLCG1-AS1 TOP1-AS1 PLCG1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_17962 chr15 90701532 90701660 + 6.98680 NA Intergenic Intergenic -26556 NM_020210 10509 Hs.474935 NM_020210 HPRD:10217 SEMA4B SEMAC|SemC sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B protein-coding 13-PTNLD9-TUMOR_peak_26157 chr2 12342537 12342718 + 6.98680 NA intron (NR_110196, intron 3 of 5) intron (NR_110196, intron 3 of 5) 195385 NR_110196 100506457 Hs.197824 NR_110196 ENSG00000224184 LOC100506457 - uncharacterized LOC100506457 ncRNA 13-PTNLD9-TUMOR_peak_56468 chrX 128800419 128800532 + 6.98680 NA Intergenic Intergenic -11542 NM_017413 8862 Hs.303084 NM_017413 HPRD:02246 APLN APEL|XNPEP2 apelin protein-coding 13-PTNLD9-TUMOR_peak_30848 chr20 33495569 33495757 + 6.98680 NA intron (NM_001076552, intron 2 of 18) intron (NM_001076552, intron 2 of 18) 31335 NM_001076552 55902 Hs.517034 NM_018677 ENSG00000131069 ACSS2 ACAS2|ACECS|ACS|ACSA|dJ1161H23.1 acyl-CoA synthetase short-chain family member 2 protein-coding 13-PTNLD9-TUMOR_peak_38044 chr4 17068724 17068828 + 6.98680 NA Intergenic MER91A|DNA|hAT-Tip100 -168352 NM_001130834 9079 Hs.714330 NM_001290 HPRD:16022 LDB2 CLIM1|LDB1 LIM domain binding 2 protein-coding 13-PTNLD9-TUMOR_peak_15059 chr13 106095376 106095500 + 6.98680 NA Intergenic Intergenic -22778 NM_001161814 267012 Hs.381382 NM_172370 HPRD:07591 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 13-PTNLD9-TUMOR_peak_27969 chr2 109521733 109521906 + 6.98680 NA intron (NM_022336, intron 11 of 11) intron (NM_022336, intron 11 of 11) 84009 NM_022336 10913 Hs.171971 NM_022336 HPRD:04974 EDAR DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1 ectodysplasin A receptor protein-coding 13-PTNLD9-TUMOR_peak_56516 chrX 133522863 133522980 + 6.98680 NA intron (NM_032458, intron 3 of 9) intron (NM_032458, intron 3 of 9) 15579 NM_001015877 84295 Hs.356501 NM_032335 HPRD:02330 PHF6 BFLS|BORJ|CENP-31 PHD finger protein 6 protein-coding 13-PTNLD9-TUMOR_peak_51836 chr8 124608663 124608959 + 6.98680 NA Intergenic Intergenic -55318 NM_001242463 114907 Hs.403933 NM_058229 HPRD:05966 FBXO32 Fbx32|MAFbx F-box protein 32 protein-coding 13-PTNLD9-TUMOR_peak_30369 chr20 6572069 6572188 + 6.98680 NA Intergenic Intergenic 164749 NR_109953 101929244 Hs.542488 NR_109953 ENSG00000229876 CASC20 - cancer susceptibility candidate 20 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_50855 chr8 47880115 47880397 + 6.98680 NA Intergenic Intergenic 127748 NR_027013 497634 Hs.406982 NR_027012 ENSG00000253314 LINC00293 BEYLA|NCRNA00293 long intergenic non-protein coding RNA 293 ncRNA 13-PTNLD9-TUMOR_peak_1700 chr1 48371866 48371966 + 6.98680 NA intron (NM_001194986, intron 2 of 6) MIR|SINE|MIR 90646 NM_001194986 388630 Hs.61504 NM_001194986 ENSG00000269113 TRABD2B TIKI2 TraB domain containing 2B protein-coding 13-PTNLD9-TUMOR_peak_18034 chr15 96415813 96415907 + 6.98680 NA Intergenic Kanga1b|DNA|TcMar-Tc2 439538 NR_027133 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 13-PTNLD9-TUMOR_peak_4908 chr1 200677996 200678106 + 6.98680 NA Intergenic Intergenic -30635 NM_001297708 23271 Hs.23585 NM_203459 HPRD:11124 CAMSAP2 CAMSAP1L1 calmodulin regulated spectrin-associated protein family, member 2 protein-coding 13-PTNLD9-TUMOR_peak_7636 chr10 72097203 72097401 + 6.98680 NA intron (NR_103467, intron 1 of 2) intron (NR_103467, intron 1 of 2) 39233 NM_001278213 55222 Hs.7778 NM_018205 HPRD:14314 LRRC20 - leucine rich repeat containing 20 protein-coding 13-PTNLD9-TUMOR_peak_8385 chr10 116267350 116267452 + 6.98680 NA intron (NM_001003407, intron 6 of 21) intron (NM_001003407, intron 6 of 21) 19284 NM_006720 3983 Hs.438236 NM_002313 HPRD:03819 ABLIM1 ABLIM|LIMAB1|LIMATIN|abLIM-1 actin binding LIM protein 1 protein-coding 13-PTNLD9-TUMOR_peak_8390 chr10 116457230 116457326 + 6.98680 NA Intergenic Intergenic -12864 NM_001003407 3983 Hs.438236 NM_002313 HPRD:03819 ABLIM1 ABLIM|LIMAB1|LIMATIN|abLIM-1 actin binding LIM protein 1 protein-coding 13-PTNLD9-TUMOR_peak_18646 chr16 16939698 16939911 + 6.98680 NA Intergenic L1HS|LINE|L1 466702 NM_001282511 101059953 Hs.636569 NM_001282511 NPIPA8 LCR16a9 nuclear pore complex interacting protein family, member A8 protein-coding 13-PTNLD9-TUMOR_peak_44137 chr6 24695966 24696060 + 6.98680 NA intron (NM_001160094, intron 2 of 3) AluSx|SINE|Alu 23390 NM_030939 81688 Hs.744857 NM_030939 C6orf62 Nbla00237|XTP12|dJ30M3.2 chromosome 6 open reading frame 62 protein-coding 13-PTNLD9-TUMOR_peak_6695 chr10 24582378 24582555 + 6.98680 NA intron (NM_001282767, intron 2 of 18) intron (NM_001282767, intron 2 of 18) 17852 NR_030334 693188 NR_030334 MIR603 MIRN603|hsa-mir-603 microRNA 603 ncRNA 13-PTNLD9-TUMOR_peak_19554 chr16 67005040 67005372 + 6.98680 NA exon (NM_024922, exon 10 of 13) exon (NM_024922, exon 10 of 13) 3828 NM_001185176 23491 Hs.268700 NM_012122 HPRD:07014 CES3 ES31 carboxylesterase 3 protein-coding 13-PTNLD9-TUMOR_peak_55768 chrX 45683990 45684222 + 6.98680 NA Intergenic Intergenic 26814 NR_125365 401585 Hs.633348 NR_125365 LOC401585 - uncharacterized LOC401585 ncRNA 13-PTNLD9-TUMOR_peak_12323 chr12 25500635 25500845 + 6.98680 NA Intergenic Intergenic -96875 NM_033360 3845 Hs.505033 NM_004985 HPRD:01817 KRAS C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|KI-RAS|KRAS1|KRAS2|NS|NS3|RASK2 Kirsten rat sarcoma viral oncogene homolog protein-coding 13-PTNLD9-TUMOR_peak_44282 chr6 27046586 27046744 + 6.98680 NA Intergenic MER61B|LTR|ERV1 53910 NM_021058 8970 Hs.591807 NM_021058 HIST1H2BJ H2B/r|H2BFR|H2BJ histone cluster 1, H2bj protein-coding 13-PTNLD9-TUMOR_peak_20539 chr17 16487651 16487801 + 6.98680 NA Intergenic CpG -15206 NM_020653 57336 Hs.99724 NM_020653 ZNF287 ZKSCAN13|ZSCAN45 zinc finger protein 287 protein-coding 13-PTNLD9-TUMOR_peak_17029 chr15 36006022 36006271 + 6.98680 NA intron (NR_038251, intron 2 of 2) intron (NR_038251, intron 2 of 2) -167742 NM_001141972 89978 Hs.107196 NM_080650 HPRD:14443 DPH6 ATPBD4 diphthamine biosynthesis 6 protein-coding 13-PTNLD9-TUMOR_peak_19328 chr16 51603603 51603708 + 6.98680 NA Intergenic Intergenic -192775 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LOC101927364 - uncharacterized LOC101927364 ncRNA 13-PTNLD9-TUMOR_peak_43706 chr6 8194886 8195114 + 6.98680 NA Intergenic Intergenic -92172 NM_004280 9521 Hs.602353 NM_004280 HPRD:10931 EEF1E1 AIMP3|P18 eukaryotic translation elongation factor 1 epsilon 1 protein-coding 13-PTNLD9-TUMOR_peak_17750 chr15 79198417 79198772 + 6.98680 NA Intergenic MLT1G1|LTR|ERVL-MaLR 33263 NM_001265605 10933 Hs.374503 NM_006791 HPRD:09532 MORF4L1 Eaf3|HsT17725|MEAF3|MORFRG15|MRG15|S863-6 mortality factor 4 like 1 protein-coding 13-PTNLD9-TUMOR_peak_22509 chr18 6917268 6917366 + 6.98680 NA Intergenic MLT2B3|LTR|ERVL 12551 NR_034100 400643 Hs.253920 NM_001103383 ENSG00000265933 LINC00668 - long intergenic non-protein coding RNA 668 ncRNA 13-PTNLD9-TUMOR_peak_8977 chr11 8766107 8766241 + 6.98680 NA intron (NM_213618, intron 2 of 19) MLT1G1-int|LTR|ERVL-MaLR -24151 NR_120590 102724784 Hs.613276 NR_120590 LOC102724784 - uncharacterized LOC102724784 ncRNA 13-PTNLD9-TUMOR_peak_51315 chr8 95246740 95246834 + 6.98680 NA Intergenic Intergenic -17256 NM_001144663 1015 Hs.591853 NM_004063 HPRD:04312 CDH17 CDH16|HPT-1|HPT1 cadherin 17, LI cadherin (liver-intestine) protein-coding 13-PTNLD9-TUMOR_peak_16219 chr14 72883750 72883888 + 6.98680 NA intron (NM_001204420, intron 3 of 15) intron (NM_001204420, intron 3 of 15) -99709 NR_106994 102465832 NR_106994 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 13-PTNLD9-TUMOR_peak_55718 chrX 38135089 38135235 + 6.98680 NA intron (NM_000328, intron 16 of 18) intron (NM_000328, intron 16 of 18) 51626 NM_001034853 6103 Hs.61438 NM_000328 HPRD:02425 RPGR COD1|CORDX1|CRD|PCDX|RP15|RP3|XLRP3|orf15 retinitis pigmentosa GTPase regulator protein-coding 13-PTNLD9-TUMOR_peak_43439 chr6 1838894 1839111 + 6.98680 NA intron (NM_001500, intron 7 of 10) intron (NM_001500, intron 7 of 10) 228321 NM_001453 2296 Hs.348883 NM_001453 HPRD:03054 FOXC1 ARA|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3 forkhead box C1 protein-coding 13-PTNLD9-TUMOR_peak_24787 chr19 36319732 36319826 + 6.98680 NA intron (NM_004646, intron 28 of 28) intron (NM_004646, intron 28 of 28) -15578 NM_021232 58510 Hs.515366 NM_021232 HPRD:17911 PRODH2 HSPOX1 proline dehydrogenase (oxidase) 2 protein-coding 13-PTNLD9-TUMOR_peak_16365 chr14 80048790 80048901 + 6.98680 NA intron (NM_001272020, intron 2 of 5) AluSc|SINE|Alu 303163 NR_073546 9369 Hs.368307 NM_004796 NRXN3 C14orf60 neurexin 3 protein-coding 13-PTNLD9-TUMOR_peak_54147 chr9 100231030 100231131 + 6.98680 NA intron (NM_014290, intron 8 of 16) intron (NM_014290, intron 8 of 16) -32382 NM_001166116 7111 Hs.404289 NM_003275 HPRD:01838 TMOD1 D9S57E|ETMOD|TMOD tropomodulin 1 protein-coding 13-PTNLD9-TUMOR_peak_26733 chr2 43629870 43629999 + 6.98680 NA intron (NM_022065, intron 28 of 37) intron (NM_022065, intron 28 of 37) 175584 NR_027251 100129726 Hs.194480 NM_178529 LINC01126 - long intergenic non-protein coding RNA 1126 ncRNA 13-PTNLD9-TUMOR_peak_38964 chr4 102153386 102153507 + 6.98680 NA intron (NM_001130691, intron 1 of 12) MamSINE1|SINE|tRNA 8583 NR_107033 102465868 NR_107033 MIR8066 hsa-mir-8066 microRNA 8066 ncRNA 13-PTNLD9-TUMOR_peak_30816 chr20 32450922 32451024 + 6.98680 NA Intergenic Intergenic 51863 NM_176812 128866 Hs.472471 NM_176812 HPRD:16642 CHMP4B C20orf178|CHMP4A|CTPP3|CTRCT31|SNF7|SNF7-2|Shax1|VPS32B|Vps32-2|dJ553F4.4 charged multivesicular body protein 4B protein-coding 13-PTNLD9-TUMOR_peak_30035 chr2 233844894 233845029 + 6.98680 NA intron (NM_019850, intron 1 of 14) intron (NM_019850, intron 1 of 14) 32990 NM_019850 25791 Hs.97316 NM_019850 HPRD:10442 NGEF ARHGEF27|EPHEXIN neuronal guanine nucleotide exchange factor protein-coding 13-PTNLD9-TUMOR_peak_52769 chr9 14258951 14259116 + 6.98680 NA intron (NM_005596, intron 2 of 8) intron (NM_005596, intron 2 of 8) 55012 NM_005596 4781 Hs.644095 NM_005596 HPRD:09008 NFIB CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I/B protein-coding 13-PTNLD9-TUMOR_peak_8016 chr10 93393078 93393188 + 6.98680 NA promoter-TSS (NM_005398) promoter-TSS (NM_005398) -275 NM_005398 5507 Hs.303090 NM_005398 HPRD:04298 PPP1R3C PPP1R5 protein phosphatase 1, regulatory subunit 3C protein-coding 13-PTNLD9-TUMOR_peak_10968 chr11 95232860 95232980 + 6.98680 NA Intergenic L2c|LINE|L2 -267215 NM_001271594 143686 Hs.120633 NM_144665 HPRD:09682 SESN3 SEST3 sestrin 3 protein-coding 13-PTNLD9-TUMOR_peak_55661 chrX 26272709 26272872 + 6.98680 NA Intergenic LTR1D|LTR|ERV1 38504 NM_001271752 347541 Hs.224079 NM_001271752 ENSG00000188408 MAGEB5 CT3.3|MAGE-B5 melanoma antigen family B, 5 protein-coding 13-PTNLD9-TUMOR_peak_42804 chr5 157890379 157890485 + 6.98680 NA Intergenic Intergenic -53651 NR_109888 101927697 Hs.483960 NR_109888 LOC101927697 - uncharacterized LOC101927697 ncRNA 13-PTNLD9-TUMOR_peak_22432 chr18 1848866 1849017 + 6.98680 NA Intergenic Intergenic -489311 NR_023926 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 13-PTNLD9-TUMOR_peak_4801 chr1 187318586 187318830 + 6.98680 NA Intergenic L1HS|LINE|L1 520676 NM_024420 5321 Hs.497200 NM_024420 HPRD:08986 PLA2G4A PLA2G4|cPLA2-alpha phospholipase A2, group IVA (cytosolic, calcium-dependent) protein-coding 13-PTNLD9-TUMOR_peak_20510 chr17 14845954 14846071 + 6.98680 NA Intergenic Intergenic -88280 NR_033371 94150 Hs.147654 NR_033371 ENSG00000259944 CDRT7 LINC00025|NCRNA00025 CMT1A duplicated region transcript 7 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_25058 chr19 42556134 42556295 + 6.98680 NA intron (NM_001301030, intron 10 of 18) L2b|LINE|L2 13743 NM_002088 2901 Hs.367799 NM_002088 HPRD:02614 GRIK5 EAA2|GRIK2|GluK5|KA2 glutamate receptor, ionotropic, kainate 5 protein-coding 13-PTNLD9-TUMOR_peak_2524 chr1 94312766 94313171 + 6.98680 NA promoter-TSS (NM_001261408) promoter-TSS (NM_001261408) -262 NM_001261408 8412 Hs.36958 NM_003567 HPRD:05268 BCAR3 NSP2|SH2D3B breast cancer anti-estrogen resistance 3 protein-coding 13-PTNLD9-TUMOR_peak_17923 chr15 88276414 88276508 + 6.98680 NA Intergenic Intergenic 156301 NR_026869 145978 Hs.350808 NM_152454 HPRD:08101 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 13-PTNLD9-TUMOR_peak_34159 chr3 30324024 30324126 + 6.98680 NA Intergenic Intergenic -323919 NM_001024847 7048 Hs.82028 NM_003242 HPRD:01823 TGFBR2 AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TGFR-2|TGFbeta-RII transforming growth factor, beta receptor II (70/80kDa) protein-coding 13-PTNLD9-TUMOR_peak_16810 chr15 24123216 24123396 + 6.98680 NA Intergenic CpG -190856 NM_002487 4692 Hs.50130 NM_002487 HPRD:03667 NDN HsT16328|PWCR necdin, melanoma antigen (MAGE) family member protein-coding 13-PTNLD9-TUMOR_peak_22800 chr18 21808312 21808445 + 6.98680 NA intron (NM_018030, intron 2 of 13) L2|LINE|L2 43818 NM_018030 114876 Hs.370725 NM_018030 HPRD:09472 OSBPL1A ORP-1|ORP1|OSBPL1B oxysterol binding protein-like 1A protein-coding 13-PTNLD9-TUMOR_peak_18770 chr16 23119273 23119401 + 6.98680 NA intron (NM_020718, intron 2 of 15) intron (NM_020718, intron 2 of 15) 41254 NM_020718 57478 Hs.183817 NM_020718 HPRD:15634 USP31 - ubiquitin specific peptidase 31 protein-coding 13-PTNLD9-TUMOR_peak_23345 chr18 58139036 58139151 + 6.98680 NA Intergenic Intergenic -99092 NM_005912 4160 Hs.532833 NM_005912 HPRD:01116 MC4R - melanocortin 4 receptor protein-coding 13-PTNLD9-TUMOR_peak_56594 chrX 149492694 149492810 + 6.98680 NA Intergenic LTR16E1|LTR|ERVL -38793 NM_001177465 10046 Hs.20136 NM_005491 HPRD:02126 MAMLD1 CG1|CXorf6|F18|HYSP2 mastermind-like domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_14297 chr12 129212664 129212758 + 6.98680 NA Intergenic MIR|SINE|MIR 95830 NM_145648 121260 Hs.507260 NM_145648 ENSG00000139370 SLC15A4 PHT1|PTR4 solute carrier family 15 (oligopeptide transporter), member 4 protein-coding 13-PTNLD9-TUMOR_peak_32610 chr21 47621122 47621469 + 6.98680 NA intron (NM_001001438, intron 17 of 22) intron (NM_001001438, intron 17 of 22) -16922 NM_032261 84221 Hs.381214 NM_032261 HPRD:10753 SPATC1L C21orf56 spermatogenesis and centriole associated 1-like protein-coding 13-PTNLD9-TUMOR_peak_35281 chr3 108024448 108024661 + 6.98680 NA intron (NM_007072, intron 1 of 9) LTR16D|LTR|ERVL 3222 NM_007072 11148 Hs.252351 NM_007072 HPRD:05082 HHLA2 B7H7 HERV-H LTR-associating 2 protein-coding 13-PTNLD9-TUMOR_peak_55898 chrX 53908838 53909076 + 6.98680 NA Intergenic L2a|LINE|L2 160670 NM_001184898 23133 Hs.133352 NM_015107 HPRD:06599 PHF8 JHDM1F|MRXSSD|ZNF422 PHD finger protein 8 protein-coding 13-PTNLD9-TUMOR_peak_6791 chr10 29670046 29670186 + 6.98680 NA Intergenic Intergenic -28347 NR_110923 102724316 Hs.499209 NR_003930 SVIL-AS1 - SVIL antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_42011 chr5 131526034 131526128 + 6.98680 NA intron (NR_047470, intron 2 of 2) LTR50|LTR|ERVL 5512 NR_047470 100861518 Hs.519568 NR_047470 P4HA2-AS1 - P4HA2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_48854 chr7 115912171 115912291 + 6.98680 NA Intergenic Intergenic 49226 NM_152829 26136 Hs.592286 NM_015641 HPRD:05833 TES TESS|TESS-2 testis derived transcript (3 LIM domains) protein-coding 13-PTNLD9-TUMOR_peak_27192 chr2 70008673 70008780 + 6.98680 NA intron (NM_001153, intron 2 of 12) intron (NM_001153, intron 2 of 12) 39599 NM_001153 307 Hs.422986 NM_001153 HPRD:00112 ANXA4 ANX4|HEL-S-274|PIG28|ZAP36 annexin A4 protein-coding 13-PTNLD9-TUMOR_peak_18037 chr15 97310977 97311276 + 6.98680 NA Intergenic L2b|LINE|L2 13758 NR_102754 100652749 Hs.303588 NR_102753 ENSG00000259282 SPATA8-AS1 - SPATA8 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_24699 chr19 34249537 34249786 + 6.98680 NA intron (NM_022467, intron 2 of 3) intron (NM_022467, intron 2 of 3) -38090 NM_001129994 79047 Hs.221873 NM_024076 HPRD:13765 KCTD15 - potassium channel tetramerization domain containing 15 protein-coding 13-PTNLD9-TUMOR_peak_35230 chr3 105317043 105317197 + 6.98680 NA Intergenic LTR8|LTR|ERV1 231563 NM_001243280 214 Hs.591293 NM_001627 HPRD:03389 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 13-PTNLD9-TUMOR_peak_26251 chr2 19976932 19977136 + 6.98680 NA Intergenic Intergenic -91581 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 13-PTNLD9-TUMOR_peak_26800 chr2 46173203 46173387 + 6.98680 NA intron (NM_005400, intron 2 of 14) intron (NM_005400, intron 2 of 14) 294252 NM_005400 5581 Hs.580351 NM_005400 HPRD:01500 PRKCE PKCE|nPKC-epsilon protein kinase C, epsilon protein-coding 13-PTNLD9-TUMOR_peak_26649 chr2 39327404 39327595 + 6.98680 NA intron (NM_005633, intron 1 of 22) L1MA9|LINE|L1 20105 NM_005633 6654 Hs.709893 NM_005633 HPRD:01681 SOS1 GF1|GGF1|GINGF|HGF|NS4 son of sevenless homolog 1 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_27331 chr2 75163086 75163315 + 6.98680 NA intron (NR_125792, intron 4 of 4) MamRep605|Unknown|Unknown -22575 NM_019896 56655 Hs.469060 NM_019896 POLE4 YHHQ1|p12 polymerase (DNA-directed), epsilon 4, accessory subunit protein-coding 13-PTNLD9-TUMOR_peak_20457 chr17 9121145 9121287 + 6.98680 NA intron (NM_004822, intron 5 of 6) Tigger15a|DNA|TcMar-Tigger -38781 NR_110828 101928266 Hs.639880 NR_110828 ENSG00000262966 LOC101928266 - uncharacterized LOC101928266 ncRNA 13-PTNLD9-TUMOR_peak_11020 chr11 99196720 99196816 + 6.98680 NA intron (NM_014361, intron 2 of 24) intron (NM_014361, intron 2 of 24) -230108 NM_175566 53942 Hs.656783 NM_014361 HPRD:06241 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 13-PTNLD9-TUMOR_peak_14568 chr13 33836313 33836432 + 6.98680 NA intron (NM_001243476, intron 5 of 17) intron (NM_001243476, intron 5 of 17) -15319 NR_046693 100874241 Hs.662433 NR_046693 ENSG00000236581 STARD13-AS STARD13-AS2 STARD13 antisense RNA ncRNA 13-PTNLD9-TUMOR_peak_6676 chr10 23688906 23689094 + 6.98680 NA Intergenic Intergenic -39198 NM_001145373 220213 Hs.499042 NM_001145373 ENSG00000165312 OTUD1 DUBA7|OTDC1 OTU deubiquitinase 1 protein-coding 13-PTNLD9-TUMOR_peak_55893 chrX 53461282 53461506 + 6.98680 NA promoter-TSS (NM_001037811) promoter-TSS (NM_001037811) -71 NM_004493 3028 Hs.171280 NM_004493 HPRD:02223 HSD17B10 17b-HSD10|ABAD|CAMR|DUPXp11.22|ERAB|HADH2|HCD2|MHBD|MRPP2|MRX17|MRX31|MRXS10|SCHAD|SDR5C1 hydroxysteroid (17-beta) dehydrogenase 10 protein-coding 13-PTNLD9-TUMOR_peak_22413 chr18 939300 939420 + 6.98680 NA Intergenic Intergenic 34163 NM_001117 116 Hs.531719 NM_001117 HPRD:02369 ADCYAP1 PACAP adenylate cyclase activating polypeptide 1 (pituitary) protein-coding 13-PTNLD9-TUMOR_peak_39616 chr4 151600946 151601089 + 6.98680 NA intron (NM_006726, intron 37 of 57) intron (NM_006726, intron 37 of 57) 97940 NM_006439 10586 Hs.584852 NM_006439 HPRD:05075 MAB21L2 MCOPS14 mab-21-like 2 (C. elegans) protein-coding 13-PTNLD9-TUMOR_peak_7438 chr10 59917279 59917396 + 6.98680 NA Intergenic Intergenic 110357 NM_152230 253430 Hs.30280 NM_152230 HPRD:17153 IPMK - inositol polyphosphate multikinase protein-coding 13-PTNLD9-TUMOR_peak_16619 chr14 103071500 103071667 + 6.98680 NA intron (NM_015156, intron 2 of 11) intron (NM_015156, intron 2 of 11) 12587 NM_015156 23186 Hs.510521 NM_015156 HPRD:09645 RCOR1 COREST|RCOR REST corepressor 1 protein-coding 13-PTNLD9-TUMOR_peak_55900 chrX 54103446 54103549 + 6.98680 NA intron (NM_001300788, intron 13 of 13) AluJo|SINE|Alu -31928 NM_001184896 23133 Hs.133352 NM_015107 HPRD:06599 PHF8 JHDM1F|MRXSSD|ZNF422 PHD finger protein 8 protein-coding 13-PTNLD9-TUMOR_peak_4893 chr1 199901298 199901400 + 6.98680 NA Intergenic MLT1A1|LTR|ERVL-MaLR -95381 NM_003822 2494 Hs.33446 NM_003822 HPRD:06830 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5, group A, member 2 protein-coding 13-PTNLD9-TUMOR_peak_8997 chr11 9075329 9075469 + 6.98680 NA intron (NM_001170690, intron 10 of 17) intron (NM_001170690, intron 10 of 17) 36527 NR_049874 100847015 NR_049874 MIR5691 - microRNA 5691 ncRNA 13-PTNLD9-TUMOR_peak_36158 chr3 139942657 139942766 + 6.98680 NA intron (NM_022131, intron 2 of 16) intron (NM_022131, intron 2 of 16) 284920 NR_108084 101927808 Hs.581236 NR_108084 ENSG00000250433 CLSTN2-AS1 - CLSTN2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_42843 chr5 159355287 159355445 + 6.98680 NA intron (NM_000679, intron 1 of 1) intron (NM_000679, intron 1 of 1) 11626 NM_000679 147 Hs.368632 NM_000679 ADRA1B ADRA1|ALPHA1BAR adrenoceptor alpha 1B protein-coding 13-PTNLD9-TUMOR_peak_51110 chr8 69666107 69666201 + 6.98680 NA intron (NM_052958, intron 10 of 13) intron (NM_052958, intron 10 of 13) 350271 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LOC100505718 - uncharacterized LOC100505718 ncRNA 13-PTNLD9-TUMOR_peak_43877 chr6 13953462 13953601 + 6.98680 NA intron (NM_001165033, intron 1 of 1) intron (NM_001165033, intron 1 of 1) 28107 NM_001165033 221687 Hs.111164 NM_152737 HPRD:15264 RNF182 - ring finger protein 182 protein-coding 13-PTNLD9-TUMOR_peak_12373 chr12 27281934 27282097 + 6.98680 NA Intergenic Intergenic -46560 NM_001080406 728858 Hs.334003 NM_001080406 ENSG00000214700 C12orf71 - chromosome 12 open reading frame 71 protein-coding 13-PTNLD9-TUMOR_peak_56466 chrX 128757028 128757256 + 6.98680 NA Intergenic Intergenic 31791 NM_017413 8862 Hs.303084 NM_017413 HPRD:02246 APLN APEL|XNPEP2 apelin protein-coding 13-PTNLD9-TUMOR_peak_4481 chr1 175288873 175288999 + 6.98680 NA Intergenic Intergenic -126707 NM_001162894 9674 Hs.518138 NM_014656 HPRD:13776 KIAA0040 - KIAA0040 protein-coding 13-PTNLD9-TUMOR_peak_28335 chr2 123391959 123392083 + 6.98680 NA Intergenic Intergenic 878900 NR_048557 7247 Hs.75066 NM_004622 HPRD:08993 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 13-PTNLD9-TUMOR_peak_11350 chr11 117594495 117594604 + 6.98680 NA intron (NM_020693, intron 3 of 32) L3|LINE|CR1 73427 NM_020693 57453 Hs.659513 NM_020693 HPRD:10921 DSCAML1 - Down syndrome cell adhesion molecule like 1 protein-coding 13-PTNLD9-TUMOR_peak_15299 chr14 23158483 23158685 + 6.98680 NA Intergenic MLT1F|LTR|ERVL-MaLR -77147 NM_005015 5018 Hs.151134 NM_005015 HPRD:03043 OXA1L OXA1 oxidase (cytochrome c) assembly 1-like protein-coding 13-PTNLD9-TUMOR_peak_29391 chr2 192477275 192477435 + 6.98680 NA Intergenic Intergenic -65443 NM_001254736 64859 Hs.591610 NM_022837 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_5477 chr1 222480038 222480137 + 6.98680 NA Intergenic Intergenic 241357 NM_024746 79802 Hs.665660 NM_024746 HPRD:08587 HHIPL2 KIAA1822L HHIP-like 2 protein-coding 13-PTNLD9-TUMOR_peak_20947 chr17 36648286 36648480 + 6.98680 NA intron (NM_001199417, intron 20 of 23) intron (NM_001199417, intron 20 of 23) 63663 NM_001199417 57636 Hs.374446 NM_020876 ENSG00000225485 ARHGAP23 - Rho GTPase activating protein 23 protein-coding 13-PTNLD9-TUMOR_peak_5749 chr1 229066250 229066544 + 6.98680 NA Intergenic Intergenic 195573 NM_021205 58480 Hs.647774 NM_021205 HPRD:06965 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 13-PTNLD9-TUMOR_peak_41082 chr5 65750640 65750769 + 6.98680 NA Intergenic Intergenic 56728 NR_105001 101928769 Hs.97903 NR_105001 ENSG00000250313 LOC101928769 - uncharacterized LOC101928769 ncRNA 13-PTNLD9-TUMOR_peak_52986 chr9 31588863 31588986 + 6.98680 NA Intergenic Intergenic -795677 NM_002197 48 Hs.567229 NM_002197 HPRD:00013 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1, soluble protein-coding 13-PTNLD9-TUMOR_peak_21418 chr17 47972207 47972530 + 6.98680 NA Intergenic Intergenic -46989 NM_001077504 255061 Hs.652130 NM_170685 HPRD:09701 TAC4 EK|HK-1|HK1|PPT-C tachykinin 4 (hemokinin) protein-coding 13-PTNLD9-TUMOR_peak_1924 chr1 57951454 57951587 + 6.98680 NA intron (NM_021080, intron 3 of 16) intron (NM_021080, intron 3 of 16) -374695 NR_104363 101926890 Hs.662207 NR_104362 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_4782 chr1 186121941 186122035 + 6.98680 NA exon (NM_031935, exon 96 of 107) exon (NM_031935, exon 96 of 107) -143417 NM_001127709 10216 Hs.647723 NM_005807 HPRD:05047 PRG4 CACP|HAPO|JCAP|MSF|SZP|bG174L6.2 proteoglycan 4 protein-coding 13-PTNLD9-TUMOR_peak_51927 chr8 126667889 126668163 + 6.98680 NA Intergenic Intergenic 223575 NM_001282985 10221 Hs.444947 NM_025195 HPRD:09863 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 13-PTNLD9-TUMOR_peak_6763 chr10 28361564 28361759 + 6.98680 NA intron (NM_173496, intron 14 of 18) L2c|LINE|L2 -73677 NM_018076 55130 Hs.127530 NM_018076 HPRD:10663 ARMC4 CILD23 armadillo repeat containing 4 protein-coding 13-PTNLD9-TUMOR_peak_21241 chr17 43796785 43796922 + 6.98680 NA intron (NM_001256299, intron 3 of 14) intron (NM_001256299, intron 3 of 14) -64793 NM_001145146 1394 Hs.417628 NM_004382 HPRD:08830 CRHR1 CRF-R|CRF-R-1|CRF-R1|CRF1|CRFR-1|CRFR1|CRH-R-1|CRH-R1|CRH-R1h|CRHR|CRHR1L|CRHR1f corticotropin releasing hormone receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_29870 chr2 220233552 220233839 + 6.98680 NA Intergenic LTR16C|LTR|ERVL 18967 NM_012100 23549 Hs.258551 NM_012100 HPRD:09924 DNPEP ASPEP|DAP aspartyl aminopeptidase protein-coding 13-PTNLD9-TUMOR_peak_56049 chrX 64815371 64815618 + 6.98680 NA Intergenic Intergenic -43193 NR_033742 83957 Hs.652967 NR_033742 HPRD:06511 FRMD8P1 - FERM domain containing 8 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_7997 chr10 92081005 92081139 + 6.98680 NA Intergenic MLT1B|LTR|ERVL-MaLR 219490 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LOC101926942 - uncharacterized LOC101926942 ncRNA 13-PTNLD9-TUMOR_peak_46062 chr6 132185261 132185365 + 6.98680 NA intron (NM_006208, intron 9 of 24) intron (NM_006208, intron 9 of 24) 56157 NM_006208 5167 Hs.527295 NM_006208 HPRD:01415 ENPP1 ARHR2|COLED|M6S1|NPP1|NPPS|PC-1|PCA1|PDNP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 protein-coding 13-PTNLD9-TUMOR_peak_34320 chr3 40841926 40842192 + 6.98680 NA Intergenic Intergenic 275690 NM_001098414 285268 Hs.19977 NM_198484 ZNF621 - zinc finger protein 621 protein-coding 13-PTNLD9-TUMOR_peak_56979 chrY 16141524 16141624 + 6.98680 NA Intergenic L1PA2|LINE|L1 -26524 NM_004679 9084 Hs.632284 NM_004679 HPRD:02453 VCY BPY1|VCY1|VCY1A variable charge, Y-linked protein-coding 13-PTNLD9-TUMOR_peak_3064 chr1 119623293 119623462 + 6.98680 NA intron (NM_201263, intron 1 of 5) intron (NM_201263, intron 1 of 5) 59918 NM_201263 10352 Hs.523506 NM_015836 HPRD:05295 WARS2 TrpRS tryptophanyl tRNA synthetase 2, mitochondrial protein-coding 13-PTNLD9-TUMOR_peak_20973 chr17 37437308 37437500 + 6.98680 NA intron (NM_032875, intron 9 of 14) intron (NM_032875, intron 9 of 14) -55364 NM_198993 342667 Hs.145068 NM_198993 HPRD:18113 STAC2 24b2|24b2/STAC2 SH3 and cysteine rich domain 2 protein-coding 13-PTNLD9-TUMOR_peak_6470 chr10 11800048 11800144 + 6.98680 NA intron (NM_024693, intron 4 of 4) intron (NM_024693, intron 4 of 4) 15740 NM_024693 79746 Hs.22242 NM_024693 HPRD:10930 ECHDC3 - enoyl CoA hydratase domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_17380 chr15 59908616 59908751 + 6.98680 NA intron (NM_004751, intron 1 of 2) intron (NM_004751, intron 1 of 2) 4701 NM_004751 9245 Hs.194710 NM_004751 HPRD:06018 GCNT3 C2/4GnT|C24GNT|C2GNT2|C2GNTM|GNTM glucosaminyl (N-acetyl) transferase 3, mucin type protein-coding 13-PTNLD9-TUMOR_peak_34928 chr3 70432816 70433008 + 6.98680 NA Intergenic AmnSINE1|SINE|Deu 384017 NR_110000 101927152 Hs.382046 NR_110000 ENSG00000240405 LINC01212 - long intergenic non-protein coding RNA 1212 ncRNA 13-PTNLD9-TUMOR_peak_45847 chr6 107996659 107996787 + 6.98680 NA Intergenic Intergenic 56877 NM_001286409 256380 Hs.486109 NM_198081 SCML4 dJ47M23.1 sex comb on midleg-like 4 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_54540 chr9 117300622 117300731 + 6.98680 NA Intergenic MLT1A1|LTR|ERVL-MaLR -32940 NM_015404 25861 Hs.93836 NM_015404 HPRD:09718 DFNB31 CIP98|PDZD7B|USH2D|WHRN|WI deafness, autosomal recessive 31 protein-coding 13-PTNLD9-TUMOR_peak_48906 chr7 123410587 123410682 + 6.98680 NA Intergenic L2c|LINE|L2 20131 NR_125730 103625684 NR_125730 RNU6-2 U6-2 RNA, U6 small nuclear 2 snRNA 13-PTNLD9-TUMOR_peak_1039 chr1 34175537 34175665 + 6.98680 NA intron (NM_052896, intron 21 of 69) L2c|LINE|L2 -150475 NM_145205 127540 Hs.568628 NM_145205 HPRD:14038 HMGB4 dJ1007G16.5 high mobility group box 4 protein-coding 13-PTNLD9-TUMOR_peak_15862 chr14 56711044 56711155 + 6.98680 NA intron (NM_021255, intron 2 of 5) Charlie25|DNA|hAT-Charlie 126006 NM_021255 57161 Hs.657926 NM_021255 HPRD:17835 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 13-PTNLD9-TUMOR_peak_46732 chr7 3018314 3018426 + 6.98680 NA intron (NM_032415, intron 1 of 24) intron (NM_032415, intron 1 of 24) 65209 NM_032415 84433 Hs.648101 NM_032415 HPRD:06234 CARD11 BENTA|BIMP3|CARMA1|IMD11|PPBL caspase recruitment domain family, member 11 protein-coding 13-PTNLD9-TUMOR_peak_34403 chr3 45154596 45154690 + 6.98680 NA intron (NM_022842, intron 2 of 8) intron (NM_022842, intron 2 of 8) 33271 NM_022842 64866 Hs.476093 NM_022842 HPRD:16696 CDCP1 CD318|SIMA135|TRASK CUB domain containing protein 1 protein-coding 13-PTNLD9-TUMOR_peak_2843 chr1 111771216 111771317 + 6.98680 NA intron (NM_001025197, intron 1 of 9) intron (NM_001025197, intron 1 of 9) 985 NM_001025197 1117 Hs.514840 NM_004000 HPRD:03315 CHI3L2 CHIL2|YKL-39|YKL39 chitinase 3-like 2 protein-coding 13-PTNLD9-TUMOR_peak_5327 chr1 209589481 209589744 + 6.98680 NA Intergenic Intergenic -12556 NM_001104548 642587 Hs.510543 NM_001104548 MIR205HG LINC00510 MIR205 host gene (non-protein coding) protein-coding 13-PTNLD9-TUMOR_peak_34395 chr3 45008377 45008514 + 6.98680 NA intron (NM_001135179, intron 1 of 6) intron (NM_001135179, intron 1 of 6) 9229 NM_001135179 51304 Hs.61430 NM_016598 ZDHHC3 DHHC-3|GODZ|ZNF373 zinc finger, DHHC-type containing 3 protein-coding 13-PTNLD9-TUMOR_peak_30101 chr2 237466385 237466679 + 6.98680 NA Intergenic L1MC4|LINE|L1 -11848 NM_020311 57007 Hs.471751 NM_020311 HPRD:09882 ACKR3 CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1 atypical chemokine receptor 3 protein-coding 13-PTNLD9-TUMOR_peak_39863 chr4 171011334 171011468 + 6.98680 NA promoter-TSS (NM_016228) promoter-TSS (NM_016228) -29 NM_182662 51166 Hs.529735 NM_016228 HPRD:12392 AADAT KAT2|KATII aminoadipate aminotransferase protein-coding 13-PTNLD9-TUMOR_peak_42151 chr5 134492420 134492636 + 6.98680 NA intron (NM_001277348, intron 2 of 5) intron (NM_001277348, intron 2 of 5) 91339 NR_037895 340073 Hs.434422 NR_037895 ENSG00000249647 C5orf66-AS2 - C5orf66 antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_55095 chr9 140916881 140916975 + 6.98680 NA intron (NM_000718, intron 18 of 45) intron (NM_000718, intron 18 of 45) 22595 NR_121582 101928786 Hs.678847 NR_121582 LOC101928786 - uncharacterized LOC101928786 ncRNA 13-PTNLD9-TUMOR_peak_42662 chr5 150284737 150284833 + 6.98680 NA promoter-TSS (NM_001172832) promoter-TSS (NM_001172832) -240 NM_001172831 91975 Hs.134885 NM_052860 HPRD:15764 ZNF300 - zinc finger protein 300 protein-coding 13-PTNLD9-TUMOR_peak_34151 chr3 29322380 29322539 + 6.98680 NA promoter-TSS (NM_001177711) promoter-TSS (NM_001177711) -29 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 13-PTNLD9-TUMOR_peak_414 chr1 11367977 11368099 + 6.98680 NA Intergenic Intergenic 34783 NM_013319 29914 Hs.522933 NM_013319 HPRD:15487 UBIAD1 SCCD|TERE1 UbiA prenyltransferase domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_35915 chr3 130944117 130944324 + 6.98680 NA intron (NM_001146003, intron 13 of 15) Tigger3b|DNA|TcMar-Tigger -136469 NR_002949 152195 Hs.380350 NM_194289 HPRD:14093 NUDT16P1 NUDT16P nudix (nucleoside diphosphate linked moiety X)-type motif 16 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_43591 chr6 4459461 4459562 + 6.98680 NA Intergenic Intergenic -151288 NR_122107 497048 Hs.591355 NM_001011540 KU-MEL-3 - uncharacterized LOC497048 ncRNA 13-PTNLD9-TUMOR_peak_26669 chr2 40033216 40033311 + 6.98680 NA Intergenic L1PA15|LINE|L1 -26847 NR_028102 80745 Hs.468254 NM_025264 HPRD:15506 THUMPD2 C2orf8 THUMP domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_35062 chr3 84157972 84158088 + 6.98680 NA Intergenic Intergenic 760696 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 13-PTNLD9-TUMOR_peak_18775 chr16 23292001 23292213 + 6.98680 NA Intergenic L2b|LINE|L2 -21484 NM_000336 6338 Hs.414614 NM_000336 HPRD:02861 SCNN1B BESC1|ENaCb|ENaCbeta|SCNEB sodium channel, non-voltage-gated 1, beta subunit protein-coding 13-PTNLD9-TUMOR_peak_18555 chr16 13472116 13472311 + 6.98680 NA Intergenic MLT1K|LTR|ERVL-MaLR 476736 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 13-PTNLD9-TUMOR_peak_54362 chr9 110803950 110804139 + 6.98680 NA Intergenic Intergenic -551997 NM_004235 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel-like factor 4 (gut) protein-coding 13-PTNLD9-TUMOR_peak_56584 chrX 148607064 148607289 + 6.98680 NA Intergenic Intergenic 14136 NR_027455 100131434 Hs.669775 NM_001039766 LINC00893 - long intergenic non-protein coding RNA 893 ncRNA 13-PTNLD9-TUMOR_peak_37193 chr3 189788542 189788658 + 6.98680 NA intron (NM_001134418, intron 1 of 14) intron (NM_001134418, intron 1 of 14) 50308 NM_018192 55214 Hs.374191 NM_018192 HPRD:17270 LEPREL1 MCVD|MLAT4|P3H2 leprecan-like 1 protein-coding 13-PTNLD9-TUMOR_peak_42484 chr5 145326147 145326338 + 6.98680 NA intron (NM_152550, intron 2 of 9) intron (NM_152550, intron 2 of 9) 10116 NM_152550 153769 Hs.443728 NM_152550 HPRD:10229 SH3RF2 HEPP1|POSHER|PPP1R39|RNF158 SH3 domain containing ring finger 2 protein-coding 13-PTNLD9-TUMOR_peak_12216 chr12 13755148 13755329 + 6.98680 NA intron (NM_000834, intron 9 of 12) intron (NM_000834, intron 9 of 12) -225559 NR_036555 283422 Hs.448717 NM_182558 HPRD:08166 C12orf36 - chromosome 12 open reading frame 36 ncRNA 13-PTNLD9-TUMOR_peak_28950 chr2 164608938 164609040 + 6.98680 NA Intergenic MER130|Unknown?|Unknown? -16476 NM_018086 55137 Hs.593650 NM_018086 FIGN - fidgetin protein-coding 13-PTNLD9-TUMOR_peak_37295 chr3 193839863 193839981 + 6.98680 NA Intergenic Intergenic -14009 NM_005524 3280 Hs.250666 NM_005524 HPRD:00770 HES1 HES-1|HHL|HRY|bHLHb39 hes family bHLH transcription factor 1 protein-coding 13-PTNLD9-TUMOR_peak_56263 chrX 96007822 96008014 + 6.98680 NA intron (NM_007309, intron 3 of 26) MIRb|SINE|MIR 68256 NM_006729 1730 Hs.226483 NM_006729 HPRD:02117 DIAPH2 DIA|DIA2|DRF2|POF|POF2 diaphanous-related formin 2 protein-coding 13-PTNLD9-TUMOR_peak_8670 chr10 134705547 134705770 + 6.98680 NA intron (NM_001200049, intron 25 of 57) intron (NM_001200049, intron 25 of 57) 50431 NM_001200049 54777 Hs.298038 NM_017609 HPRD:12596 CFAP46 C10orf123|C10orf124|C10orf92|C10orf93|TTC40|bA288G11.4|bA288G11.5|bB137A17.2|bB137A17.3 cilia and flagella associated protein 46 protein-coding 13-PTNLD9-TUMOR_peak_36358 chr3 149501528 149501658 + 6.98680 NA intron (NM_001144960, intron 2 of 5) intron (NM_001144960, intron 2 of 5) 9017 NM_001144960 389161 Hs.665988 NM_001144960 ENSG00000206199 ANKUB1 C3orf16 ankyrin repeat and ubiquitin domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_36960 chr3 183889449 183889543 + 6.98680 NA 3' UTR (NM_004423, exon 15 of 15) 3' UTR (NM_004423, exon 15 of 15) -3138 NM_001025205 1173 Hs.518460 NM_004068 HPRD:03014 AP2M1 AP50|CLAPM1|mu2 adaptor-related protein complex 2, mu 1 subunit protein-coding 13-PTNLD9-TUMOR_peak_21827 chr17 64825633 64825898 + 6.98680 NA Intergenic Intergenic 42575 NR_030364 693219 NR_030364 MIR634 MIRN634|hsa-mir-634 microRNA 634 ncRNA 13-PTNLD9-TUMOR_peak_42592 chr5 149099312 149099482 + 6.98680 NA Intergenic MLT1K|LTR|ERVL-MaLR -10418 NM_001172698 133522 Hs.483816 NM_133263 HPRD:10594 PPARGC1B ERRL1|PERC|PGC-1(beta)|PGC1B peroxisome proliferator-activated receptor gamma, coactivator 1 beta protein-coding 13-PTNLD9-TUMOR_peak_17132 chr15 42376721 42376945 + 6.98680 NA intron (NM_178034, intron 6 of 19) intron (NM_178034, intron 6 of 19) 9919 NM_178034 283748 Hs.380225 NM_178034 HPRD:07145 PLA2G4D cPLA2delta phospholipase A2, group IVD (cytosolic) protein-coding 13-PTNLD9-TUMOR_peak_18134 chr16 231512 231625 + 6.98680 NA TTS (NM_005331) TTS (NM_005331) 1235 NM_005331 3049 Hs.247921 NM_005331 HPRD:00791 HBQ1 HBQ hemoglobin, theta 1 protein-coding 13-PTNLD9-TUMOR_peak_17314 chr15 54083985 54084112 + 6.98680 NA Intergenic LTR14C|LTR|ERVK -28973 NR_102334 256764 Hs.122125 NM_182758 HPRD:10987 WDR72 AI2A3 WD repeat domain 72 protein-coding 13-PTNLD9-TUMOR_peak_46177 chr6 143123381 143123531 + 6.98680 NA intron (NM_006734, intron 2 of 9) MLT1J2|LTR|ERVL-MaLR 142882 NM_006734 3097 Hs.510172 NM_006734 HPRD:00881 HIVEP2 HIV-EP2|MBP-2|MIBP1|SHN2|ZAS2|ZNF40B human immunodeficiency virus type I enhancer binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_33490 chr22 49387401 49387513 + 6.98680 NA Intergenic L1HS|LINE|L1 124875 NR_038944 100128946 Hs.535676 NR_038944 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 13-PTNLD9-TUMOR_peak_11451 chr11 122376520 122376692 + 6.98680 NA Intergenic Intergenic -149792 NM_032873 84959 Hs.444075 NM_032873 HPRD:16463 UBASH3B STS-1|STS1|TULA-2|p70 ubiquitin associated and SH3 domain containing B protein-coding 13-PTNLD9-TUMOR_peak_26555 chr2 36557064 36557174 + 6.98680 NA Intergenic Intergenic 25594 NR_037631 100288911 Hs.432924 NR_037631 LOC100288911 - uncharacterized LOC100288911 ncRNA 13-PTNLD9-TUMOR_peak_46524 chr6 167048597 167048696 + 6.98680 NA intron (NM_001006932, intron 2 of 21) intron (NM_001006932, intron 2 of 21) -7920 NM_021135 6196 Hs.655277 NM_021135 HPRD:03403 RPS6KA2 HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|pp90RSK3 ribosomal protein S6 kinase, 90kDa, polypeptide 2 protein-coding 13-PTNLD9-TUMOR_peak_14404 chr13 21653952 21654284 + 6.98680 NA Intergenic Intergenic -18396 NM_014572 26524 Hs.78960 NM_014572 HPRD:07277 LATS2 KPM large tumor suppressor kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_56277 chrX 100603683 100603812 + 6.98680 NA promoter-TSS (NM_001145951) promoter-TSS (NM_001145951) -39 NM_001145951 1678 Hs.447877 NM_004085 HPRD:02287 TIMM8A DDP|DDP1|DFN1|MTS|TIM8 translocase of inner mitochondrial membrane 8 homolog A (yeast) protein-coding 13-PTNLD9-TUMOR_peak_381 chr1 10764735 10764948 + 6.98680 NA intron (NM_017766, intron 3 of 15) CpG 91892 NM_001079843 54897 Hs.439894 NM_017766 HPRD:07897 CASZ1 CAS11|CST|SRG|ZNF693|dJ734G22.1 castor zinc finger 1 protein-coding 13-PTNLD9-TUMOR_peak_16277 chr14 75454914 75455178 + 6.98680 NA Intergenic Intergenic -14566 NM_014239 8892 Hs.409137 NM_014239 HPRD:05923 EIF2B2 EIF-2Bbeta|EIF2B eukaryotic translation initiation factor 2B, subunit 2 beta, 39kDa protein-coding 13-PTNLD9-TUMOR_peak_52901 chr9 21782189 21782451 + 6.98680 NA Intergenic Intergenic -20315 NM_002451 4507 Hs.193268 NM_002451 HPRD:01134 MTAP BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus methylthioadenosine phosphorylase protein-coding 13-PTNLD9-TUMOR_peak_23036 chr18 43382870 43383008 + 6.98680 NA Intergenic Intergenic -22606 NM_213602 284266 Hs.287692 NM_213602 HPRD:13011 SIGLEC15 CD33L3|HsT1361|SIGLEC-15 sialic acid binding Ig-like lectin 15 protein-coding 13-PTNLD9-TUMOR_peak_20303 chr17 4392569 4392692 + 6.98680 NA Intergenic Intergenic -9499 NM_001124758 124976 Hs.22824 NM_001124758 SPNS2 - spinster homolog 2 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_17142 chr15 42996742 42996839 + 6.98680 NA intron (NM_020759, intron 26 of 32) L1M1|LINE|L1 32627 NM_138477 146059 Hs.599232 NM_138477 HPRD:08470 CDAN1 CDA1|CDAI|CDAN1A|DLT|PRO1295 codanin 1 protein-coding 13-PTNLD9-TUMOR_peak_30282 chr20 2089777 2089910 + 6.98680 NA intron (NM_080836, intron 2 of 3) intron (NM_080836, intron 2 of 3) 7315 NM_080836 140901 Hs.100057 NM_080836 HPRD:11612 STK35 CLIK1|STK35L1 serine/threonine kinase 35 protein-coding 13-PTNLD9-TUMOR_peak_12282 chr12 20587986 20588222 + 6.98680 NA intron (NM_000921, intron 1 of 15) intron (NM_000921, intron 1 of 15) 65925 NM_000921 5139 Hs.386791 NM_000921 HPRD:00441 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A phosphodiesterase 3A, cGMP-inhibited protein-coding 13-PTNLD9-TUMOR_peak_43149 chr5 175593531 175593651 + 6.98680 NA intron (NR_036494, intron 16 of 25) intron (NR_036494, intron 16 of 25) 32707 NR_036494 643201 Hs.390285 NR_036494 ENSG00000248596 LOC643201 - centrosomal protein 192kDa pseudogene pseudo 13-PTNLD9-TUMOR_peak_30150 chr2 239946891 239947039 + 6.98680 NA Intergenic Intergenic 43645 NR_039642 100616397 NR_039642 MIR4440 - microRNA 4440 ncRNA 13-PTNLD9-TUMOR_peak_38023 chr4 15187859 15188013 + 6.98680 NA Intergenic Intergenic -153624 NM_001135170 114905 Hs.153714 NM_031911 HPRD:16633 C1QTNF7 CTRP7|ZACRP7 C1q and tumor necrosis factor related protein 7 protein-coding 13-PTNLD9-TUMOR_peak_10636 chr11 74906321 74906471 + 6.98680 NA intron (NM_001145212, intron 6 of 10) intron (NM_001145212, intron 6 of 10) 35552 NM_001145211 11309 Hs.7884 NM_007256 HPRD:07061 SLCO2B1 OATP-B|OATP2B1|OATPB|SLC21A9 solute carrier organic anion transporter family, member 2B1 protein-coding 13-PTNLD9-TUMOR_peak_49977 chr8 5875907 5876145 + 6.98680 NA Intergenic Intergenic 388043 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 13-PTNLD9-TUMOR_peak_2597 chr1 97331389 97331751 + 6.98680 NA Intergenic MLT1B|LTR|ERVL-MaLR 143376 NR_125356 58155 Hs.596061 NM_021190 HPRD:12233 PTBP2 PTBLP|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_7681 chr10 73291505 73291609 + 6.98680 NA intron (NM_001171930, intron 6 of 30) intron (NM_001171930, intron 6 of 30) -19880 NR_120672 102723377 Hs.568789 NR_120672 LOC102723377 - uncharacterized LOC102723377 ncRNA 13-PTNLD9-TUMOR_peak_41335 chr5 75919208 75919320 + 6.98680 NA promoter-TSS (NM_004101) promoter-TSS (NM_004101) -5 NM_004101 2151 Hs.42502 NM_004101 HPRD:03561 F2RL2 PAR-3|PAR3 coagulation factor II (thrombin) receptor-like 2 protein-coding 13-PTNLD9-TUMOR_peak_48861 chr7 116328084 116328189 + 6.98680 NA intron (NM_001127500, intron 1 of 20) intron (NM_001127500, intron 1 of 20) 15677 NM_001127500 4233 Hs.132966 NM_000245 HPRD:01280 MET AUTS9|HGFR|RCCP2|c-Met MET proto-oncogene, receptor tyrosine kinase protein-coding 13-PTNLD9-TUMOR_peak_45430 chr6 64307777 64307876 + 6.98680 NA Intergenic Intergenic 25909 NM_003463 7803 Hs.227777 NM_003463 HPRD:03349 PTP4A1 HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1 protein tyrosine phosphatase type IVA, member 1 protein-coding 13-PTNLD9-TUMOR_peak_26577 chr2 36877287 36877429 + 6.98680 NA Intergenic Intergenic -46475 NM_053276 5212 Hs.137415 NM_053276 HPRD:18284 VIT - vitrin protein-coding 13-PTNLD9-TUMOR_peak_12065 chr12 8135022 8135243 + 6.98680 NA Intergenic Intergenic -46240 NM_006931 6515 Hs.419240 NM_006931 HPRD:00686 SLC2A3 GLUT3 solute carrier family 2 (facilitated glucose transporter), member 3 protein-coding 13-PTNLD9-TUMOR_peak_26978 chr2 56112983 56113078 + 6.98680 NA intron (NM_001039348, intron 5 of 11) intron (NM_001039348, intron 5 of 11) 38268 NM_001039349 2202 Hs.76224 NM_004105 HPRD:03331 EFEMP1 DHRD|DRAD|FBLN3|FBNL|FIBL-3|MLVT|MTLV|S1-5 EGF containing fibulin-like extracellular matrix protein 1 protein-coding 13-PTNLD9-TUMOR_peak_26746 chr2 44108963 44109057 + 6.98680 NA Intergenic MER58A|DNA|hAT-Charlie 42907 NM_022437 64241 Hs.413931 NM_022437 HPRD:05679 ABCG8 GBD4|STSL ATP-binding cassette, sub-family G (WHITE), member 8 protein-coding 13-PTNLD9-TUMOR_peak_32305 chr21 39600101 39600388 + 6.98680 NA Intergenic HERV3-int|LTR|ERV1 -1593 NM_001276439 3772 Hs.411299 NM_002243 HPRD:03659 KCNJ15 IRKK|KIR1.3|KIR4.2 potassium inwardly-rectifying channel, subfamily J, member 15 protein-coding 13-PTNLD9-TUMOR_peak_55475 chrX 1587314 1587408 + 6.98680 NA intron (NM_178129, intron 1 of 1) intron (NM_178129, intron 1 of 1) -14706 NM_001173473 8623 Hs.533514 NM_004192 HPRD:02156 ASMTL ASMTLX|ASMTLY|ASTML acetylserotonin O-methyltransferase-like protein-coding 13-PTNLD9-TUMOR_peak_40928 chr5 56053005 56053175 + 6.98680 NA Intergenic Intergenic -57810 NM_005921 4214 Hs.653654 NM_005921 ENSG00000095015 MAP3K1 MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6 mitogen-activated protein kinase kinase kinase 1, E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_43878 chr6 14017310 14017411 + 6.98680 NA Intergenic Intergenic 91936 NM_001165033 221687 Hs.111164 NM_152737 HPRD:15264 RNF182 - ring finger protein 182 protein-coding 13-PTNLD9-TUMOR_peak_37774 chr4 6482399 6482546 + 6.98680 NA intron (NM_001206995, intron 2 of 9) L1ME3C|LINE|L1 -8146 NM_020416 5522 Hs.479069 NM_020416 HPRD:09345 PPP2R2C B55-GAMMA|IMYPNO|IMYPNO1|PR52|PR55G protein phosphatase 2, regulatory subunit B, gamma protein-coding 13-PTNLD9-TUMOR_peak_11807 chr12 1913807 1913921 + 6.98680 NA intron (NM_172364, intron 29 of 37) MLT1J|LTR|ERVL-MaLR -15569 NM_001163926 654429 Hs.585579 NM_001039029 ENSG00000166159 LRTM2 - leucine-rich repeats and transmembrane domains 2 protein-coding 13-PTNLD9-TUMOR_peak_46226 chr6 147226537 147226793 + 6.98680 NA intron (NR_034115, intron 7 of 10) intron (NR_034115, intron 7 of 10) -101705 NR_003954 729176 Hs.486708 NR_003954 KATNBL1P6 - katanin p80 subunit B-like 1 pseudogene 6 pseudo 13-PTNLD9-TUMOR_peak_11903 chr12 5276221 5276387 + 6.98680 NA Intergenic Intergenic 72974 NR_120476 101929584 Hs.436529 NR_120476 ENSG00000256115 LOC101929584 - uncharacterized LOC101929584 ncRNA 13-PTNLD9-TUMOR_peak_11180 chr11 110951828 110952008 + 6.98680 NA Intergenic Intergenic -174789 NM_198498 341032 Hs.298685 NM_198498 HPRD:14663 C11orf53 - chromosome 11 open reading frame 53 protein-coding 13-PTNLD9-TUMOR_peak_24663 chr19 32209021 32209262 + 6.98680 NA Intergenic Intergenic 125954 NM_001205273 100507527 Hs.432564 NM_001205273 THEG5 - testis highly expressed protein 5 protein-coding 13-PTNLD9-TUMOR_peak_38605 chr4 76498977 76499071 + 6.98680 NA Intergenic Intergenic 17766 NR_046429 152816 Hs.24510 NM_178497 HPRD:08040 C4orf26 AI2A4 chromosome 4 open reading frame 26 protein-coding 13-PTNLD9-TUMOR_peak_55706 chrX 34903178 34903285 + 6.98680 NA Intergenic Intergenic -57682 NM_152631 170062 Hs.197801 NM_152631 HPRD:06559 FAM47B - family with sequence similarity 47, member B protein-coding 13-PTNLD9-TUMOR_peak_19599 chr16 67711757 67711946 + 6.98680 NA intron (NR_027398, intron 1 of 1) intron (NR_027398, intron 1 of 1) 11134 NM_001012984 388284 Hs.632208 NM_001012984 HPRD:18380 C16orf86 - chromosome 16 open reading frame 86 protein-coding 13-PTNLD9-TUMOR_peak_55720 chrX 38186771 38186931 + 6.98680 NA promoter-TSS (NM_000328) promoter-TSS (NM_000328) -63 NM_000328 6103 Hs.61438 NM_000328 HPRD:02425 RPGR COD1|CORDX1|CRD|PCDX|RP15|RP3|XLRP3|orf15 retinitis pigmentosa GTPase regulator protein-coding 13-PTNLD9-TUMOR_peak_11321 chr11 116713763 116713952 + 6.98680 NA TTS (NM_001281749) TTS (NM_001281749) -5519 NM_000039 335 Hs.93194 NM_000039 HPRD:02517 APOA1 - apolipoprotein A-I protein-coding 13-PTNLD9-TUMOR_peak_53305 chr9 42849421 42849604 + 6.98680 NA intron (NR_046175, intron 3 of 3).2 intron (NR_046175, intron 3 of 3).2 -8640 NR_026558 441432 Hs.743215 NR_026558 AQP7P3 AQPap-3 aquaporin 7 pseudogene 3 pseudo 13-PTNLD9-TUMOR_peak_16886 chr15 29928438 29928589 + 6.98680 NA Intergenic Intergenic -65586 NM_015307 23359 Hs.383564 NM_015307 ENSG00000104059 FAM189A1 TMEM228 family with sequence similarity 189, member A1 protein-coding 13-PTNLD9-TUMOR_peak_19491 chr16 58718635 58718750 + 6.98680 NA promoter-TSS (NM_018231) promoter-TSS (NM_018231) -18 NM_018231 55238 Hs.10499 NM_018231 SLC38A7 SNAT7 solute carrier family 38, member 7 protein-coding 13-PTNLD9-TUMOR_peak_13892 chr12 113011157 113011251 + 6.98680 NA Intergenic Intergenic 154668 NM_002834 5781 Hs.506852 NM_002834 HPRD:01470 PTPN11 BPTP3|CFC|NS1|PTP-1D|PTP2C|SH-PTP2|SH-PTP3|SHP2 protein tyrosine phosphatase, non-receptor type 11 protein-coding 13-PTNLD9-TUMOR_peak_29932 chr2 226135643 226135738 + 6.98680 NA Intergenic Intergenic -129912 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 13-PTNLD9-TUMOR_peak_417 chr1 11544208 11544468 + 6.98680 NA intron (NM_020780, intron 1 of 20) MIRb|SINE|MIR 5043 NM_020780 57540 Hs.202355 NM_020780 ENSG00000204624 PTCHD2 DISP3 patched domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_31145 chr20 43343424 43343527 + 6.98680 NA promoter-TSS (NM_003881) promoter-TSS (NM_003881) -410 NM_003881 8839 Hs.592145 NM_003881 HPRD:16020 WISP2 CCN5|CT58|CTGF-L WNT1 inducible signaling pathway protein 2 protein-coding 13-PTNLD9-TUMOR_peak_55490 chrX 3419968 3420079 + 6.98680 NA Intergenic Intergenic -155339 NM_015419 25878 Hs.369422 NM_015419 HPRD:06456 MXRA5 - matrix-remodelling associated 5 protein-coding 13-PTNLD9-TUMOR_peak_43411 chr6 1241135 1241271 + 6.98680 NA Intergenic Intergenic -71472 NM_033260 94234 Hs.591352 NM_033260 HPRD:17015 FOXQ1 HFH1 forkhead box Q1 protein-coding 13-PTNLD9-TUMOR_peak_28733 chr2 152416921 152417042 + 6.98680 NA intron (NM_001164508, intron 124 of 181) intron (NM_001164508, intron 124 of 181) 150377 NM_001177665 55183 Hs.655671 NM_018151 HPRD:10603 RIF1 - replication timing regulatory factor 1 protein-coding 13-PTNLD9-TUMOR_peak_28353 chr2 127385323 127385417 + 6.98680 NA Intergenic LTR45C|LTR|ERV1 -28141 NM_001256584 2995 Hs.59138 NM_002101 HPRD:00193 GYPC CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 13-PTNLD9-TUMOR_peak_46334 chr6 151990083 151990229 + 6.98680 NA Intergenic Intergenic -21475 NM_001122742 2099 Hs.208124 NM_000125 HPRD:00589 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_11414 chr11 119979052 119979147 + 6.98680 NA Intergenic Intergenic 29764 NM_012101 23650 Hs.504115 NM_012101 HPRD:10280 TRIM29 ATDC tripartite motif containing 29 protein-coding 13-PTNLD9-TUMOR_peak_14616 chr13 39722722 39723056 + 6.98680 NA Intergenic Intergenic 110441 NM_001017370 387921 Hs.507783 NM_001012754 HPRD:18377 NHLRC3 - NHL repeat containing 3 protein-coding 13-PTNLD9-TUMOR_peak_15667 chr14 48891959 48892097 + 6.98680 NA Intergenic Intergenic -627811 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 13-PTNLD9-TUMOR_peak_10793 chr11 82931481 82931601 + 6.98680 NA intron (NM_001300973, intron 5 of 11) LTR30|LTR|ERV1 26760 NR_125355 338699 Hs.503438 NM_182603 HPRD:08230 ANKRD42 PPP1R79|SARP ankyrin repeat domain 42 protein-coding 13-PTNLD9-TUMOR_peak_29722 chr2 210785158 210785275 + 6.98680 NA intron (NM_182587, intron 32 of 62) intron (NM_182587, intron 32 of 62) -82073 NM_001278289 6120 Hs.282260 NM_006916 RPE RPE2-1 ribulose-5-phosphate-3-epimerase protein-coding 13-PTNLD9-TUMOR_peak_54710 chr9 125342785 125342956 + 6.98680 NA Intergenic Intergenic -12114 NM_001004454 138881 Hs.632695 NM_001004454 HPRD:14923 OR1L8 OR9-24 olfactory receptor, family 1, subfamily L, member 8 protein-coding 13-PTNLD9-TUMOR_peak_17925 chr15 88360174 88360346 + 6.98680 NA Intergenic Intergenic 240100 NR_026869 145978 Hs.350808 NM_152454 HPRD:08101 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 13-PTNLD9-TUMOR_peak_12848 chr12 53081780 53081894 + 6.98680 NA Intergenic Intergenic -7646 NM_006121 3848 Hs.80828 NM_006121 HPRD:00763 KRT1 CK1|EHK|EHK1|EPPK|K1|KRT1A|NEPPK keratin 1 protein-coding 13-PTNLD9-TUMOR_peak_40874 chr5 54442534 54442628 + 6.98680 NA exon (NM_001170402, exon 3 of 12) exon (NM_001170402, exon 3 of 12) -13403 NM_001008397 493869 Hs.289044 NM_001008397 GPX8 EPLA847|GPx-8|GSHPx-8|UNQ847 glutathione peroxidase 8 (putative) protein-coding 13-PTNLD9-TUMOR_peak_54911 chr9 132709773 132709923 + 6.98680 NA intron (NM_015033, intron 6 of 16) intron (NM_015033, intron 6 of 16) 77964 NR_106914 102466750 NR_106914 MIR6855 hsa-mir-6855 microRNA 6855 ncRNA 13-PTNLD9-TUMOR_peak_2199 chr1 74255763 74255946 + 6.98680 NA Intergenic MER70-int|LTR|ERVL 408017 NM_001105659 127255 Hs.644625 NM_145258 HPRD:14485 LRRIQ3 LRRC44 leucine-rich repeats and IQ motif containing 3 protein-coding 13-PTNLD9-TUMOR_peak_12664 chr12 47488737 47488835 + 6.98680 NA intron (NM_001281429, intron 1 of 2) AluJr|SINE|Alu -15052 NM_001143668 347902 Hs.121520 NM_181847 HPRD:16483 AMIGO2 ALI1|AMIGO-2|DEGA adhesion molecule with Ig-like domain 2 protein-coding 13-PTNLD9-TUMOR_peak_40759 chr5 44875861 44875955 + 6.98680 NA Intergenic LTR78|LTR|ERV1 66881 NM_016640 10884 Hs.124165 NM_016640 HPRD:17597 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 13-PTNLD9-TUMOR_peak_42962 chr5 169979826 169979951 + 6.98680 NA intron (NM_014592, intron 1 of 7) intron (NM_014592, intron 1 of 7) 48848 NM_001278340 30820 Hs.484111 NM_014592 HPRD:06879 KCNIP1 KCHIP1|VABP Kv channel interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_38107 chr4 24925971 24926130 + 6.98680 NA intron (NM_173463, intron 1 of 12) MLT1G|LTR|ERVL-MaLR -11450 NM_001130726 91050 Hs.106432 NM_173463 HPRD:10908 CCDC149 - coiled-coil domain containing 149 protein-coding 13-PTNLD9-TUMOR_peak_25103 chr19 44905579 44905851 + 6.98680 NA promoter-TSS (NM_001291489) promoter-TSS (NM_001291489) 62 NM_001291488 26974 Hs.709428 NM_152354 HPRD:15759 ZNF285 ZNF285A zinc finger protein 285 protein-coding 13-PTNLD9-TUMOR_peak_56787 chrY 2259934 2260185 + 6.98680 NA intron (NM_145177, intron 3 of 6).2 intron (NM_145177, intron 3 of 6).2 108521 NM_001171135 9189 Hs.131452 NM_004729 HPRD:02170 ZBED1 ALTE|DREF|TRAMP|hDREF zinc finger, BED-type containing 1 protein-coding 13-PTNLD9-TUMOR_peak_15882 chr14 58287448 58287582 + 6.98680 NA intron (NM_001206920, intron 1 of 7) intron (NM_001206920, intron 1 of 7) 45077 NM_001206920 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35, member F4 protein-coding 13-PTNLD9-TUMOR_peak_15846 chr14 55783319 55783492 + 6.98680 NA intron (NM_152231, intron 1 of 1) AluJb|SINE|Alu 44533 NM_152231 55030 Hs.525348 NM_017943 HPRD:16442 FBXO34 Fbx34 F-box protein 34 protein-coding 13-PTNLD9-TUMOR_peak_21828 chr17 64940726 64940850 + 6.98680 NA Intergenic Intergenic -20192 NM_014405 27092 Hs.514423 NM_014405 HPRD:05911 CACNG4 - calcium channel, voltage-dependent, gamma subunit 4 protein-coding 13-PTNLD9-TUMOR_peak_22455 chr18 3207747 3207867 + 6.98680 NA intron (NM_003803, intron 2 of 37) intron (NM_003803, intron 2 of 37) 12299 NM_019856 8736 Hs.464469 NM_003803 HPRD:04618 MYOM1 SKELEMIN myomesin 1 protein-coding 13-PTNLD9-TUMOR_peak_6203 chr1 248078303 248078533 + 6.98680 NA Intergenic LTR38|LTR|ERV1 -5902 NM_001005522 343172 Hs.521114 NM_001005522 HPRD:17712 OR2T8 OR2T8P olfactory receptor, family 2, subfamily T, member 8 protein-coding 13-PTNLD9-TUMOR_peak_9209 chr11 17192955 17193164 + 6.98680 NA Intergenic Intergenic -1705 NM_002645 5286 Hs.175343 NM_002645 HPRD:04672 PIK3C2A CPK|PI3-K-C2(ALPHA)|PI3-K-C2A phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha protein-coding 13-PTNLD9-TUMOR_peak_51464 chr8 102992950 102993107 + 6.98680 NA intron (NM_001040624, intron 3 of 7) L3|LINE|CR1 143534 NM_001040624 83988 Hs.492427 NM_032041 HPRD:09466 NCALD - neurocalcin delta protein-coding 13-PTNLD9-TUMOR_peak_4104 chr1 160576942 160577099 + 6.98680 NA Intergenic Intergenic -27714 NM_001184882 8832 Hs.398093 NM_003874 HPRD:05151 CD84 LY9B|SLAMF5|hCD84|mCD84 CD84 molecule protein-coding 13-PTNLD9-TUMOR_peak_18022 chr15 94274303 94274425 + 6.98680 NA Intergenic L1PA6|LINE|L1 -125425 NR_120321 101927153 Hs.371900 NR_120321 ENSG00000258476 LOC101927153 - uncharacterized LOC101927153 ncRNA 13-PTNLD9-TUMOR_peak_30025 chr2 233105081 233105262 + 6.98680 NA intron (NR_046477, intron 10 of 18) intron (NR_046477, intron 10 of 18) -138177 NM_001632 250 Hs.284255 NM_001632 ENSG00000163283 ALPP ALP|PALP|PLAP|PLAP-1 alkaline phosphatase, placental protein-coding 13-PTNLD9-TUMOR_peak_1988 chr1 61193339 61193526 + 6.98680 NA intron (NR_110628, intron 4 of 5) MSTB1|LTR|ERVL-MaLR 97824 NR_110628 101926964 Hs.650459 NR_110628 ENSG00000231252 LOC101926964 - uncharacterized LOC101926964 ncRNA 13-PTNLD9-TUMOR_peak_13730 chr12 108493657 108493778 + 6.98680 NA Intergenic Intergenic -29794 NM_014653 9671 Hs.143591 NM_014653 HPRD:17196 WSCD2 - WSC domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_26917 chr2 51446850 51447142 + 6.98680 NA Intergenic Intergenic -187322 NM_001135659 9378 Hs.637685 NM_004801 HPRD:11858 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 13-PTNLD9-TUMOR_peak_33150 chr22 32870576 32870678 + 6.98680 NA promoter-TSS (NM_012179) promoter-TSS (NM_012179) -80 NM_012179 25793 Hs.5912 NM_012179 HPRD:07292 FBXO7 FBX|FBX07|FBX7|PARK15|PKPS F-box protein 7 protein-coding 13-PTNLD9-TUMOR_peak_13549 chr12 97962531 97962638 + 6.98680 NA Intergenic Intergenic 4994 NR_029678 406926 NR_029678 miRBase:MI0000453 MIR135A2 MIRN135-2|MIRN135A2 microRNA 135a-2 ncRNA 13-PTNLD9-TUMOR_peak_43908 chr6 15486174 15486355 + 6.98680 NA intron (NM_001267040, intron 5 of 17) intron (NM_001267040, intron 5 of 17) 177025 NR_036448 84062 Hs.571148 NM_032122 HPRD:06190 DTNBP1 BLOC1S8|DBND|HPS7|My031|SDY dystrobrevin binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_39833 chr4 169679568 169679717 + 6.98680 NA intron (NM_016081, intron 10 of 20) intron (NM_016081, intron 10 of 20) -73514 NM_001166110 23022 Hs.151220 NM_016081 HPRD:09731 PALLD CGI151|MYN|PNCA1|SIH002 palladin, cytoskeletal associated protein protein-coding 13-PTNLD9-TUMOR_peak_55766 chrX 45339132 45339325 + 6.98680 NA Intergenic L2c|LINE|L2 -25405 NR_104645 101927528 Hs.550772 NR_104644 ENSG00000229563 LINC01204 - long intergenic non-protein coding RNA 1204 ncRNA 13-PTNLD9-TUMOR_peak_483 chr1 15237756 15238031 + 6.98680 NA intron (NM_201628, intron 1 of 14) intron (NM_201628, intron 1 of 14) -12732 NM_001018000 23254 Hs.368823 NM_015209 HPRD:11122 KAZN KAZ kazrin, periplakin interacting protein protein-coding 13-PTNLD9-TUMOR_peak_8129 chr10 99621232 99621377 + 6.98680 NA intron (NM_001010917, intron 2 of 4) intron (NM_001010917, intron 2 of 4) 11309 NM_001010917 401647 Hs.567524 NM_001010917 HPRD:16579 GOLGA7B C10orf132|C10orf133|bA451M19.3|bA459F3.4 golgin A7 family, member B protein-coding 13-PTNLD9-TUMOR_peak_27172 chr2 69525509 69525653 + 6.98680 NA Intergenic Intergenic 88805 NM_001244710 2673 Hs.580300 NM_002056 HPRD:00702 GFPT1 CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG glutamine--fructose-6-phosphate transaminase 1 protein-coding 13-PTNLD9-TUMOR_peak_18549 chr16 12707683 12707794 + 6.98680 NA Intergenic LTR10A|LTR|ERV1 -106440 NR_039869 100616195 NR_039869 miRBase:MI0017353 MIR4718 - microRNA 4718 ncRNA 13-PTNLD9-TUMOR_peak_29103 chr2 173860692 173860798 + 6.98680 NA intron (NM_001282901, intron 9 of 24) intron (NM_001282901, intron 9 of 24) 67812 NM_001282901 11069 Hs.470646 NM_007023 HPRD:06929 RAPGEF4 2|CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor (GEF) 4 protein-coding 13-PTNLD9-TUMOR_peak_17352 chr15 58732425 58732535 + 6.98680 NA intron (NR_120338, intron 2 of 2) intron (NR_120338, intron 2 of 2) 8305 NM_000236 3990 Hs.654472 NM_000236 HPRD:01058 LIPC HDLCQ12|HL|HTGL|LIPH lipase, hepatic protein-coding 13-PTNLD9-TUMOR_peak_41684 chr5 107079483 107079604 + 6.98680 NA Intergenic Intergenic -72947 NM_001962 1946 Hs.288741 NM_001962 HPRD:03324 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin-A5 protein-coding 13-PTNLD9-TUMOR_peak_32436 chr21 43983879 43983992 + 6.98680 NA exon (NM_018964, exon 14 of 21) exon (NM_018964, exon 14 of 21) 64193 NM_018964 54020 Hs.547009 NM_018964 HPRD:10479 SLC37A1 G3PP solute carrier family 37 (glucose-6-phosphate transporter), member 1 protein-coding 13-PTNLD9-TUMOR_peak_2378 chr1 88271740 88271840 + 6.98680 NA Intergenic Intergenic -434452 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 13-PTNLD9-TUMOR_peak_38259 chr4 45122329 45122445 + 6.98680 NA Intergenic Intergenic -393736 NM_001270881 132789 Hs.21398 NM_138335 HPRD:13594 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 13-PTNLD9-TUMOR_peak_44051 chr6 19867564 19867689 + 6.98680 NA Intergenic Intergenic 30025 NM_001546 3400 Hs.519601 NM_001546 ID4 IDB4|bHLHb27 inhibitor of DNA binding 4, dominant negative helix-loop-helix protein protein-coding 13-PTNLD9-TUMOR_peak_15402 chr14 25026092 25026222 + 6.98680 NA Intergenic ERVL-E-int|LTR|ERVL 19309 NM_001911 1511 Hs.421724 NM_001911 HPRD:00289 CTSG CATG|CG cathepsin G protein-coding 13-PTNLD9-TUMOR_peak_23784 chr19 6611019 6611296 + 6.98680 NA Intergenic L1M4|LINE|L1 -19994 NM_001252 970 Hs.501497 NM_001252 HPRD:18515 CD70 CD27L|CD27LG|TNFSF7 CD70 molecule protein-coding 13-PTNLD9-TUMOR_peak_12337 chr12 26244222 26244336 + 6.98680 NA Intergenic Intergenic 33724 NM_030762 79365 Hs.177841 NM_030762 HPRD:16204 BHLHE41 BHLHB3|DEC2|SHARP1|hDEC2 basic helix-loop-helix family, member e41 protein-coding 13-PTNLD9-TUMOR_peak_24238 chr19 15740253 15740381 + 6.98680 NA 3' UTR (NM_007253, exon 13 of 13) 3' UTR (NM_007253, exon 13 of 13) -11390 NM_001199209 4051 Hs.106242 NM_000896 HPRD:03169 CYP4F3 CPF3|CYP4F|LTB4H cytochrome P450, family 4, subfamily F, polypeptide 3 protein-coding 13-PTNLD9-TUMOR_peak_45513 chr6 74375762 74375862 + 6.98680 NA Intergenic Intergenic -12075 NM_012434 26503 Hs.597422 NM_012434 HPRD:05058 SLC17A5 AST|ISSD|NSD|SD|SIALIN|SIASD|SLD solute carrier family 17 (acidic sugar transporter), member 5 protein-coding 13-PTNLD9-TUMOR_peak_48908 chr7 124405821 124405993 + 6.98680 NA 5' UTR (NM_005302, exon 1 of 2) 5' UTR (NM_005302, exon 1 of 2) 172 NM_005302 2861 Hs.406094 NM_005302 GPR37 EDNRBL|PAELR|hET(B)R-LP G protein-coupled receptor 37 (endothelin receptor type B-like) protein-coding 13-PTNLD9-TUMOR_peak_910 chr1 30531995 30532097 + 6.98680 NA Intergenic MLT1K|LTR|ERVL-MaLR -21587 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LOC101929406 - uncharacterized LOC101929406 ncRNA 13-PTNLD9-TUMOR_peak_26749 chr2 44271454 44271702 + 6.98680 NA Intergenic Intergenic -48434 NM_133259 10128 Hs.368084 NM_133259 HPRD:06343 LRPPRC CLONE-23970|GP130|LRP130|LSFC leucine-rich pentatricopeptide repeat containing protein-coding 13-PTNLD9-TUMOR_peak_17058 chr15 39697013 39697294 + 6.98680 NA Intergenic Intergenic 154268 NM_207445 400360 Hs.376109 NM_207445 HPRD:13437 C15orf54 - chromosome 15 open reading frame 54 protein-coding 13-PTNLD9-TUMOR_peak_2975 chr1 116138452 116138658 + 6.98680 NA Intergenic Intergenic -46019 NM_001172411 81839 Hs.515130 NM_138959 HPRD:18279 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 13-PTNLD9-TUMOR_peak_15048 chr13 103563785 103563925 + 6.98680 NA Intergenic Intergenic 31406 NR_026965 121952 Hs.660773 NR_026965 ENSG00000250878 METTL21EP METTL21CP1 methyltransferase like 21E, pseudogene pseudo 13-PTNLD9-TUMOR_peak_17462 chr15 65611294 65611388 + 6.98680 NA Intergenic Intergenic -32323 NM_017851 54956 Hs.30634 NM_017851 HPRD:07919 PARP16 ARTD15|C15orf30|pART15 poly (ADP-ribose) polymerase family, member 16 protein-coding 13-PTNLD9-TUMOR_peak_54245 chr9 103278232 103278362 + 6.98680 NA intron (NM_003692, intron 4 of 9) intron (NM_003692, intron 4 of 9) 42777 NM_003692 8577 Hs.598100 NM_003692 HPRD:04570 TMEFF1 C9orf2|CT120.1|H7365|TR-1 transmembrane protein with EGF-like and two follistatin-like domains 1 protein-coding 13-PTNLD9-TUMOR_peak_50359 chr8 23618870 23619064 + 6.98680 NA Intergenic Intergenic -54856 NM_001136271 137814 Hs.532654 NM_001136271 ENSG00000180053 NKX2-6 CSX2|CTHM|NKX2F|NKX4-2 NK2 homeobox 6 protein-coding 13-PTNLD9-TUMOR_peak_32238 chr21 36724484 36724628 + 6.98680 NA Intergenic Intergenic 228506 NR_073512 100506403 Hs.536609 NR_073512 ENSG00000159216 LOC100506403 - uncharacterized LOC100506403 ncRNA 13-PTNLD9-TUMOR_peak_34150 chr3 29274734 29274831 + 6.98680 NA Intergenic L2a|LINE|L2 47648 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 13-PTNLD9-TUMOR_peak_6914 chr10 34728451 34728545 + 6.98680 NA intron (NM_001184791, intron 4 of 20) AluSz|SINE|Alu 375755 NM_001184791 56288 Hs.131489 NM_019619 HPRD:05994 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 13-PTNLD9-TUMOR_peak_30421 chr20 11177060 11177173 + 6.98680 NA Intergenic Intergenic 76915 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 13-PTNLD9-TUMOR_peak_17760 chr15 80061499 80061624 + 6.98680 NA Intergenic Intergenic 127778 NR_037654 10588 Hs.194294 NM_006441 MTHFS HsT19268 5,10-methenyltetrahydrofolate synthetase (5-formyltetrahydrofolate cyclo-ligase) protein-coding 13-PTNLD9-TUMOR_peak_20661 chr17 20610404 20610508 + 6.98680 NA Intergenic Intergenic -5303 NR_073509 100287072 Hs.676308 NR_073509 LOC100287072 - ribosomal protein S6 kinase, 70kDa, polypeptide 1 pseudogene pseudo 13-PTNLD9-TUMOR_peak_9109 chr11 12725769 12725863 + 6.98680 NA intron (NM_021961, intron 2 of 12) intron (NM_021961, intron 2 of 12) 29847 NM_021961 7003 Hs.655331 NM_021961 HPRD:01802 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain family member 1 (SV40 transcriptional enhancer factor) protein-coding 13-PTNLD9-TUMOR_peak_41863 chr5 121602942 121603147 + 6.98680 NA Intergenic L1PB1|LINE|L1 -44776 NM_005460 9627 Hs.426463 NM_005460 HPRD:04804 SNCAIP SYPH1|Sph1 synuclein, alpha interacting protein protein-coding 13-PTNLD9-TUMOR_peak_8567 chr10 126973812 126974020 + 6.98680 NA Intergenic Intergenic -124292 NM_001083914 1488 Hs.501345 NM_001329 HPRD:04016 CTBP2 - C-terminal binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_30451 chr20 13472784 13473057 + 6.98680 NA intron (NM_017714, intron 10 of 13) intron (NM_017714, intron 10 of 13) 146663 NM_017714 55617 Hs.348297 NM_017714 HPRD:07460 TASP1 C20orf13|dJ585I14.2 taspase, threonine aspartase, 1 protein-coding 13-PTNLD9-TUMOR_peak_36655 chr3 168803720 168803838 + 6.98680 NA intron (NM_001105077, intron 16 of 16) intron (NM_001105077, intron 16 of 16) 60314 NM_001105077 2122 Hs.744090 NM_004991 HPRD:01310 MECOM AML1-EVI-1|EVI1|MDS1|MDS1-EVI1|PRDM3 MDS1 and EVI1 complex locus protein-coding 13-PTNLD9-TUMOR_peak_29936 chr2 226996081 226996189 + 6.98680 NA Intergenic Intergenic -11375 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 13-PTNLD9-TUMOR_peak_33405 chr22 44351211 44351433 + 6.98680 NA promoter-TSS (NM_015380) promoter-TSS (NM_015380) 61 NM_015380 25813 Hs.505824 NM_015380 HPRD:10826 SAMM50 OMP85|SAM50|TOB55|TRG-3|YNL026W SAMM50 sorting and assembly machinery component protein-coding 13-PTNLD9-TUMOR_peak_8140 chr10 100074414 100074543 + 6.98680 NA Intergenic Intergenic -46471 NM_032211 84171 Hs.306814 NM_032211 HPRD:09538 LOXL4 LOXC lysyl oxidase-like 4 protein-coding 13-PTNLD9-TUMOR_peak_32320 chr21 40145355 40145497 + 6.98680 NA promoter-TSS (NR_027065) promoter-TSS (NR_027065) -25 NR_027065 400866 Hs.278704 NM_001001789 HPRD:10744 LINC00114 C21orf24|NCRNA00114 long intergenic non-protein coding RNA 114 ncRNA 13-PTNLD9-TUMOR_peak_26743 chr2 43970998 43971114 + 6.98680 NA exon (NM_172069, exon 23 of 30) exon (NM_172069, exon 23 of 30) -30122 NM_016008 51626 Hs.371597 NM_015522 HPRD:13116 DYNC2LI1 D2LIC|LIC3 dynein, cytoplasmic 2, light intermediate chain 1 protein-coding 13-PTNLD9-TUMOR_peak_13851 chr12 111325893 111326037 + 6.98680 NA intron (NM_001286243, intron 7 of 10) intron (NM_001286243, intron 7 of 10) 32439 NM_000432 4633 Hs.75535 NM_000432 HPRD:01181 MYL2 CMH10|MLC2 myosin, light chain 2, regulatory, cardiac, slow protein-coding 13-PTNLD9-TUMOR_peak_43120 chr5 174204782 174204889 + 6.98680 NA Intergenic LTR37B|LTR|ERV1 26098 NR_039777 100616202 NR_039777 miRBase:MI0017261 MIR4634 - microRNA 4634 ncRNA 13-PTNLD9-TUMOR_peak_31070 chr20 39707129 39707235 + 6.98680 NA intron (NM_003286, intron 5 of 20) intron (NM_003286, intron 5 of 20) 49720 NM_003286 7150 Hs.472737 NM_003286 HPRD:00535 TOP1 TOPI topoisomerase (DNA) I protein-coding 13-PTNLD9-TUMOR_peak_22180 chr17 76702457 76702585 + 6.98680 NA intron (NM_001292019, intron 3 of 12) L1ME1|LINE|L1 10593 NM_001292019 9267 Hs.191215 NM_004762 HPRD:01630 CYTH1 B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7 cytohesin 1 protein-coding 13-PTNLD9-TUMOR_peak_5335 chr1 210013305 210013477 + 6.98680 NA intron (NM_014388, intron 7 of 11) L2b|LINE|L2 12079 NM_014388 27042 Hs.194754 NM_014388 HPRD:14535 DIEXF C1orf107|DEF|DJ434O14.5|UTP25 digestive organ expansion factor homolog (zebrafish) protein-coding 13-PTNLD9-TUMOR_peak_55481 chrX 2309934 2310185 + 6.98680 NA intron (NM_145177, intron 3 of 6) intron (NM_145177, intron 3 of 6) 108521 NM_001171135 9189 Hs.131452 NM_004729 HPRD:02170 ZBED1 ALTE|DREF|TRAMP|hDREF zinc finger, BED-type containing 1 protein-coding 13-PTNLD9-TUMOR_peak_42199 chr5 136556279 136556422 + 6.98680 NA intron (NM_004598, intron 3 of 10) L2c|LINE|L2 278668 NM_004598 6695 Hs.596136 NM_004598 HPRD:11887 SPOCK1 SPOCK|TESTICAN|TIC1 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1 protein-coding 13-PTNLD9-TUMOR_peak_56781 chrY 1537314 1537408 + 6.98680 NA intron (NM_178129, intron 1 of 1).2 intron (NM_178129, intron 1 of 1).2 -14706 NM_001173473 8623 Hs.533514 NM_004192 HPRD:02156 ASMTL ASMTLX|ASMTLY|ASTML acetylserotonin O-methyltransferase-like protein-coding 13-PTNLD9-TUMOR_peak_14685 chr13 44702829 44703023 + 6.98680 NA intron (NR_104065, intron 1 of 4) intron (NR_104065, intron 1 of 4) -13538 NR_104064 101929212 Hs.534877 NR_104064 SMIM2-AS1 C13orf44-AS1|C3orf81-AS1 SMIM2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_7433 chr10 58297847 58298026 + 6.98680 NA Intergenic LTR16A|LTR|ERVL -176902 NM_032997 11130 Hs.591363 NM_007057 HPRD:18366 ZWINT HZwint-1|KNTC2AP|ZWINT1 ZW10 interacting kinetochore protein protein-coding 13-PTNLD9-TUMOR_peak_30082 chr2 235979097 235979232 + 6.98680 NA Intergenic Intergenic 118536 NM_014521 23677 Hs.516777 NM_014521 HPRD:09285 SH3BP4 BOG25|TTP SH3-domain binding protein 4 protein-coding 13-PTNLD9-TUMOR_peak_21355 chr17 46534097 46534224 + 6.98680 NA intron (NR_110804, intron 5 of 5) intron (NR_110804, intron 5 of 5) 11965 NR_110804 101927166 Hs.149244 NR_110804 LOC101927166 - uncharacterized LOC101927166 ncRNA 13-PTNLD9-TUMOR_peak_41589 chr5 96812092 96812194 + 6.98680 NA Intergenic AluSg|SINE|Alu -28257 NR_105028 102546227 Hs.582516 NR_105028 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 13-PTNLD9-TUMOR_peak_29885 chr2 220969750 220970054 + 6.98680 NA Intergenic Intergenic -198616 NR_036228 100422959 NR_036228 miRBase:MI0015874 MIR4268 - microRNA 4268 ncRNA 13-PTNLD9-TUMOR_peak_19797 chr16 76980933 76981033 + 6.98680 NA Intergenic Intergenic 78150 NR_039870 100616172 NR_039870 miRBase:MI0017354 MIR4719 - microRNA 4719 ncRNA 13-PTNLD9-TUMOR_peak_15287 chr14 22736755 22736943 + 6.98680 NA Intergenic LTR16C|LTR|ERVL 321294 NM_001344 1603 Hs.82890 NM_001344 HPRD:02589 DAD1 OST2 defender against cell death 1 protein-coding 13-PTNLD9-TUMOR_peak_24339 chr19 17791075 17791173 + 6.98680 NA intron (NM_001080421, intron 1 of 41) CpG 7884 NM_001080421 23025 Hs.164502 NM_001080421 ENSG00000130477 UNC13A Munc13-1 unc-13 homolog A (C. elegans) protein-coding 13-PTNLD9-TUMOR_peak_8271 chr10 105650172 105650287 + 6.98680 NA intron (NM_024928, intron 8 of 9) intron (NM_024928, intron 8 of 9) 27816 NM_024928 79991 Hs.62314 NM_024928 OBFC1 AAF-44|AAF44|RPA-32|STN1|bA541N10.2 oligonucleotide/oligosaccharide-binding fold containing 1 protein-coding 13-PTNLD9-TUMOR_peak_40984 chr5 58741731 58741828 + 6.98680 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) -89052 NM_001197219 5144 Hs.117545 NM_006203 HPRD:02530 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D, cAMP-specific protein-coding 13-PTNLD9-TUMOR_peak_45970 chr6 118986277 118986392 + 6.98680 NA intron (NM_001178035, intron 1 of 13) intron (NM_001178035, intron 1 of 13) -13314 NM_206921 387119 Hs.656959 NM_206921 HPRD:12874 CEP85L C6orf204|NY-BR-15|bA57K17.2 centrosomal protein 85kDa-like protein-coding 13-PTNLD9-TUMOR_peak_28848 chr2 159750708 159750894 + 6.98680 NA Intergenic MIR3|SINE|MIR -74345 NM_001145909 85461 Hs.61590 NM_033394 HPRD:18146 TANC1 ROLSB|TANC tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 protein-coding 13-PTNLD9-TUMOR_peak_48849 chr7 114871296 114871452 + 6.98680 NA Intergenic Intergenic 152362 NR_120521 102724386 Hs.352357 NR_120521 LINC01393 - long intergenic non-protein coding RNA 1393 ncRNA 13-PTNLD9-TUMOR_peak_51858 chr8 125238503 125238628 + 6.98680 NA intron (NR_125420, intron 1 of 2) intron (NR_125420, intron 1 of 2) 21074 NR_125420 101927588 Hs.617072 NR_125420 ENSG00000214803 LOC101927588 - uncharacterized LOC101927588 ncRNA 13-PTNLD9-TUMOR_peak_16461 chr14 92863598 92863799 + 6.98680 NA intron (NM_153647, intron 3 of 17) intron (NM_153647, intron 3 of 17) 73546 NM_153646 123041 Hs.385530 NM_153646 SLC24A4 AI2A5|NCKX4|SHEP6|SLC24A2 solute carrier family 24 (sodium/potassium/calcium exchanger), member 4 protein-coding 13-PTNLD9-TUMOR_peak_36510 chr3 156833159 156833319 + 6.98680 NA intron (NR_034007, intron 1 of 3) intron (NR_034007, intron 1 of 3) 7552 NR_034007 339894 Hs.478050 NR_034007 ENSG00000243629 LINC00880 - long intergenic non-protein coding RNA 880 ncRNA 13-PTNLD9-TUMOR_peak_14839 chr13 68148846 68149034 + 6.98680 NA Intergenic MER68|LTR|ERVL -344472 NM_203487 5101 Hs.654709 NM_020403 HPRD:04661 PCDH9 - protocadherin 9 protein-coding 13-PTNLD9-TUMOR_peak_20570 chr17 17817421 17817515 + 6.98680 NA intron (NM_001033551, intron 1 of 13) intron (NM_001033551, intron 1 of 13) 58316 NM_001082968 146691 Hs.462379 NM_144678 HPRD:18213 TOM1L2 - target of myb1-like 2 (chicken) protein-coding 13-PTNLD9-TUMOR_peak_16483 chr14 94152801 94152895 + 6.98680 NA intron (NM_020818, intron 43 of 49) intron (NM_020818, intron 43 of 49) 101918 NM_178013 145270 Hs.432401 NM_178004 HPRD:17907 PRIMA1 PRIMA proline rich membrane anchor 1 protein-coding 13-PTNLD9-TUMOR_peak_39001 chr4 104917899 104918021 + 6.98680 NA Intergenic Intergenic -276987 NM_001059 6870 Hs.942 NM_001059 TACR3 HH11|NK-3R|NK3R|NKR|TAC3RL tachykinin receptor 3 protein-coding 13-PTNLD9-TUMOR_peak_2468 chr1 92366200 92366351 + 6.98680 NA intron (NM_001195684, intron 1 of 17) intron (NM_001195684, intron 1 of 17) 5284 NM_001195684 7049 Hs.482390 NM_003243 HPRD:02846 TGFBR3 BGCAN|betaglycan transforming growth factor, beta receptor III protein-coding 13-PTNLD9-TUMOR_peak_56403 chrX 118149486 118149750 + 6.98680 NA intron (NR_110311, intron 10 of 10) intron (NR_110311, intron 10 of 10) 39323 NM_001289109 79836 Hs.144266 NM_024778 HPRD:06708 LONRF3 RNF127 LON peptidase N-terminal domain and ring finger 3 protein-coding 13-PTNLD9-TUMOR_peak_28631 chr2 141284239 141284469 + 6.98680 NA intron (NM_018557, intron 47 of 90) intron (NM_018557, intron 47 of 90) 1604916 NM_018557 53353 Hs.656461 NM_018557 HPRD:16383 LRP1B LRP-DIT|LRPDIT low density lipoprotein receptor-related protein 1B protein-coding 13-PTNLD9-TUMOR_peak_29916 chr2 224711367 224711559 + 6.98680 NA Intergenic L2|LINE|L2 -9144 NR_110905 130340 Hs.632555 NM_178814 HPRD:16495 AP1S3 - adaptor-related protein complex 1, sigma 3 subunit protein-coding 13-PTNLD9-TUMOR_peak_22092 chr17 74947615 74947786 + 6.98680 NA Intergenic MER20|DNA|hAT-Charlie 78971 NM_198955 146664 Hs.144531 NM_144677 HPRD:14392 MGAT5B GnT-IX|GnT-VB mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B protein-coding 13-PTNLD9-TUMOR_peak_8357 chr10 114423320 114423509 + 6.98680 NA intron (NM_145206, intron 5 of 7) intron (NM_145206, intron 5 of 7) 29485 NR_036177 100422909 NR_036177 MIR4295 - microRNA 4295 ncRNA 13-PTNLD9-TUMOR_peak_30340 chr20 4057469 4057750 + 6.98680 NA Intergenic LTR47B|LTR|ERVL -61393 NM_001134338 11237 Hs.589884 NM_007219 HPRD:10198 RNF24 G1L ring finger protein 24 protein-coding 13-PTNLD9-TUMOR_peak_25100 chr19 44764023 44764177 + 6.98680 NA promoter-TSS (NM_001207005) promoter-TSS (NM_001207005) 33 NM_181756 353355 Hs.466891 NM_181756 HPRD:15756 ZNF233 - zinc finger protein 233 protein-coding 13-PTNLD9-TUMOR_peak_11796 chr12 1552800 1552973 + 6.98680 NA intron (NR_027949, intron 14 of 15) intron (NR_027949, intron 14 of 15) -56771 NR_028415 100292680 Hs.391695 NR_028415 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 13-PTNLD9-TUMOR_peak_38214 chr4 40073232 40073377 + 6.98680 NA intron (NM_018177, intron 1 of 17) AluSq2|SINE|Alu -14485 NR_027277 344967 Hs.534633 NR_027277 ENSG00000205794 LOC344967 - acyl-CoA thioesterase 7 pseudogene pseudo 13-PTNLD9-TUMOR_peak_39964 chr4 184492711 184492923 + 6.98680 NA Intergenic Intergenic 65582 NM_001291959 3622 Hs.107153 NM_001564 HPRD:05021 ING2 ING1L|p33ING2 inhibitor of growth family, member 2 protein-coding 13-PTNLD9-TUMOR_peak_4928 chr1 201154129 201154251 + 6.98680 NA Intergenic Intergenic -5763 NM_001164586 91156 Hs.519024 NM_178275 HPRD:16812 IGFN1 EEF1A2BP1 immunoglobulin-like and fibronectin type III domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_46346 chr6 152623222 152623403 + 6.98680 NA intron (NM_182961, intron 91 of 145) CpG -78353 NR_120501 100505475 Hs.571203 NR_120501 SYNE1-AS1 - SYNE1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_17141 chr15 42942679 42942885 + 6.98680 NA intron (NM_020759, intron 7 of 32) L2b|LINE|L2 74925 NM_020759 57519 Hs.122061 NM_020759 ENSG00000159433 STARD9 - StAR-related lipid transfer (START) domain containing 9 protein-coding 13-PTNLD9-TUMOR_peak_14876 chr13 76344750 76345066 + 6.98680 NA intron (NM_015842, intron 1 of 26) MIRb|SINE|MIR 10111 NM_015842 4008 Hs.207631 NM_005358 HPRD:05078 LMO7 FBX20|FBXO20|LOMP LIM domain 7 protein-coding 13-PTNLD9-TUMOR_peak_21173 chr17 42621140 42621235 + 6.98680 NA Intergenic Intergenic -13625 NM_001466 2535 Hs.142912 NM_001466 FZD2 Fz2|fz-2|fzE2|hFz2 frizzled class receptor 2 protein-coding 13-PTNLD9-TUMOR_peak_52763 chr9 14179567 14179690 + 6.98680 NA intron (NM_001282787, intron 2 of 10) intron (NM_001282787, intron 2 of 10) 1173 NM_001282787 4781 Hs.644095 NM_005596 HPRD:09008 NFIB CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I/B protein-coding 13-PTNLD9-TUMOR_peak_13503 chr12 95335366 95335460 + 6.98680 NA Intergenic Intergenic 62076 NM_018838 55967 Hs.506374 NM_018838 HPRD:16781 NDUFA12 B17.2|DAP13 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12 protein-coding 13-PTNLD9-TUMOR_peak_2893 chr1 113305342 113305529 + 6.98680 NA Intergenic Intergenic 42246 NM_001004440 284467 Hs.439116 NM_182759 HPRD:16877 FAM19A3 TAFA-3|TAFA3 family with sequence similarity 19 (chemokine (C-C motif)-like), member A3 protein-coding 13-PTNLD9-TUMOR_peak_1370 chr1 41964676 41964772 + 6.98058 NA Intergenic Intergenic -14380 NM_001956 1907 Hs.1407 NM_001956 HPRD:07173 EDN2 ET2|PPET2 endothelin 2 protein-coding 13-PTNLD9-TUMOR_peak_27835 chr2 101402839 101403118 + 6.98032 NA Intergenic Intergenic -33635 NM_002518 4862 Hs.156832 NM_002518 HPRD:09137 NPAS2 MOP4|PASD4|bHLHe9 neuronal PAS domain protein 2 protein-coding 13-PTNLD9-TUMOR_peak_21129 chr17 41512457 41512635 + 6.98032 NA Intergenic Intergenic -9628 NR_031751 100313779 NR_031751 miRBase:MI0010636 MIR2117 - microRNA 2117 ncRNA 13-PTNLD9-TUMOR_peak_39982 chr4 184909272 184909506 + 6.98032 NA intron (NM_020225, intron 1 of 3) intron (NM_020225, intron 1 of 3) 82880 NM_020225 56977 Hs.21958 NM_020225 HPRD:16823 STOX2 - storkhead box 2 protein-coding 13-PTNLD9-TUMOR_peak_13460 chr12 90150553 90150803 + 6.98032 NA Intergenic Intergenic 47946 NR_028138 338758 Hs.601766 NR_028138 ENSG00000271614 LINC00936 - long intergenic non-protein coding RNA 936 ncRNA 13-PTNLD9-TUMOR_peak_28060 chr2 112093240 112093457 + 6.98032 NA Intergenic L1ME3A|LINE|L1 -14680 NR_039634 100616499 NR_039634 miRBase:MI0016775 MIR4435-1 - microRNA 4435-1 ncRNA 13-PTNLD9-TUMOR_peak_39986 chr4 185187311 185187429 + 6.98032 NA Intergenic L1M6|LINE|L1 -48256 NM_153343 133121 Hs.297814 NM_153343 HPRD:16863 ENPP6 NPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 protein-coding 13-PTNLD9-TUMOR_peak_40681 chr5 39662425 39662527 + 6.98032 NA Intergenic AluJr|SINE|Alu 141943 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LOC101926940 - uncharacterized LOC101926940 ncRNA 13-PTNLD9-TUMOR_peak_12981 chr12 56435868 56435983 + 6.98032 NA 5' UTR (NM_001029, exon 1 of 4) 5' UTR (NM_001029, exon 1 of 4) 239 NM_001029 6231 Hs.447562 NM_001029 HPRD:04743 RPS26 DBA10|S26 ribosomal protein S26 protein-coding 13-PTNLD9-TUMOR_peak_13538 chr12 96794034 96794329 + 6.98032 NA 5' UTR (NM_001170464, exon 1 of 16) 5' UTR (NM_001170464, exon 1 of 16) 185 NM_002595 5128 Hs.506415 NM_002595 HPRD:09141 CDK17 PCTAIRE2|PCTK2 cyclin-dependent kinase 17 protein-coding 13-PTNLD9-TUMOR_peak_26693 chr2 42722065 42722280 + 6.98032 NA promoter-TSS (NM_172344) promoter-TSS (NM_172344) 463 NM_001282755 57504 Hs.435413 NM_020744 HPRD:12359 MTA3 - metastasis associated 1 family, member 3 protein-coding 13-PTNLD9-TUMOR_peak_14748 chr13 49732554 49732650 + 6.98032 NA intron (NR_103528, intron 8 of 25) L1PA2|LINE|L1 48163 NM_014923 22862 Hs.508010 NM_014923 HPRD:13548 FNDC3A FNDC3|HUGO|bA203I16.1|bA203I16.5 fibronectin type III domain containing 3A protein-coding 13-PTNLD9-TUMOR_peak_18173 chr16 845673 845780 + 6.98032 NA exon (NM_022092, exon 17 of 22) exon (NM_022092, exon 17 of 22) 5007 NM_016541 51764 Hs.247888 NM_016541 HPRD:12116 GNG13 G(gamma)13|h2-35 guanine nucleotide binding protein (G protein), gamma 13 protein-coding 13-PTNLD9-TUMOR_peak_16247 chr14 74300739 74300900 + 6.98032 NA Intergenic Intergenic -17715 NM_001146154 145482 Hs.632344 NM_152444 HPRD:09782 PTGR2 HEL-S-298|PGR2|ZADH1 prostaglandin reductase 2 protein-coding 13-PTNLD9-TUMOR_peak_16783 chr15 22707538 22707632 + 6.97827 NA intron (NR_027407, intron 12 of 17) intron (NR_027407, intron 12 of 17) 8143 NR_027407 100132979 Hs.454647 NR_027407 GOLGA8DP GOLGA8D golgin A8 family, member D, pseudogene pseudo 13-PTNLD9-TUMOR_peak_1651 chr1 47223660 47223923 + 6.97827 NA Intergenic Intergenic -39055 NM_014774 9813 Hs.707688 NM_014774 HPRD:17191 EFCAB14 KIAA0494 EF-hand calcium binding domain 14 protein-coding 13-PTNLD9-TUMOR_peak_34830 chr3 63898722 63898833 + 6.97495 NA intron (NM_001177387, intron 2 of 12) intron (NM_001177387, intron 2 of 12) 14702 NM_001177387 6314 Hs.476595 NM_000333 HPRD:06365 ATXN7 ADCAII|OPCA3|SCA7 ataxin 7 protein-coding 13-PTNLD9-TUMOR_peak_52438 chr8 144623096 144623428 + 6.97495 NA intron (NM_015117, intron 1 of 11) CpG 358 NM_015117 23144 Hs.521915 NM_015117 HPRD:15697 ZC3H3 ZC3HDC3 zinc finger CCCH-type containing 3 protein-coding 13-PTNLD9-TUMOR_peak_41925 chr5 125781393 125781492 + 6.97495 NA intron (NM_001146320, intron 1 of 12) intron (NM_001146320, intron 1 of 12) -19345 NM_001146322 65983 Hs.363558 NM_023927 HPRD:11402 GRAMD3 NS3TP2 GRAM domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_53552 chr9 71737171 71737277 + 6.97495 NA intron (NM_001170414, intron 1 of 21) CpG 1044 NM_001170414 9414 Hs.50382 NM_004817 HPRD:06369 TJP2 C9DUPq21.11|DFNA51|DUP9q21.11|PFIC4|X104|ZO2 tight junction protein 2 protein-coding 13-PTNLD9-TUMOR_peak_15221 chr14 20096946 20097085 + 6.97494 NA Intergenic Intergenic -76743 NM_001145442 641455 Hs.654289 NM_001145442 ENSG00000187537 POTEM ACT|P704P|POTE14beta POTE ankyrin domain family, member M protein-coding 13-PTNLD9-TUMOR_peak_47551 chr7 55790667 55790778 + 6.97437 NA Intergenic Intergenic -18462 NR_003949 360132 Hs.446691 NM_182827 HPRD:16900 FKBP9P1 FKBP9L FK506 binding protein 9 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_39350 chr4 130833142 130833238 + 6.97437 NA Intergenic AluJr|SINE|Alu -140557 NR_110753 101927282 Hs.407480 NR_110753 ENSG00000246876 LOC101927282 - uncharacterized LOC101927282 ncRNA 13-PTNLD9-TUMOR_peak_27856 chr2 102003758 102003917 + 6.97437 NA exon (NM_153836, exon 1 of 4) exon (NM_153836, exon 1 of 4) 128 NM_153836 200407 Hs.732289 NM_153836 CREG2 - cellular repressor of E1A-stimulated genes 2 protein-coding 13-PTNLD9-TUMOR_peak_22962 chr18 35084590 35084684 + 6.97437 NA intron (NM_001025087, intron 1 of 12) intron (NM_001025087, intron 1 of 12) 61363 NM_001025089 56853 Hs.435976 NM_020180 HPRD:12534 CELF4 BRUNOL-4|BRUNOL4 CUGBP, Elav-like family member 4 protein-coding 13-PTNLD9-TUMOR_peak_38804 chr4 86874874 86874968 + 6.97437 NA intron (NM_001025616, intron 5 of 9) intron (NM_001025616, intron 5 of 9) 23495 NM_031305 83478 Hs.444229 NM_031305 HPRD:09804 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 13-PTNLD9-TUMOR_peak_30635 chr20 24369843 24369998 + 6.97437 NA Intergenic Intergenic -79915 NM_024893 79953 Hs.124638 NM_024893 HPRD:12766 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 13-PTNLD9-TUMOR_peak_34736 chr3 56957965 56958059 + 6.97437 NA intron (NM_001128615, intron 3 of 12) intron (NM_001128615, intron 3 of 12) -7513 NM_001289698 50650 Hs.476402 NM_019555 HPRD:12480 ARHGEF3 GEF3|STA3|XPLN Rho guanine nucleotide exchange factor (GEF) 3 protein-coding 13-PTNLD9-TUMOR_peak_28303 chr2 121943317 121943613 + 6.97437 NA Intergenic Intergenic 99313 NM_014553 29842 Hs.156471 NM_014553 HPRD:18175 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2-like 1 protein-coding 13-PTNLD9-TUMOR_peak_20307 chr17 4437504 4437671 + 6.97437 NA intron (NM_001124758, intron 9 of 12) intron (NM_001124758, intron 9 of 12) 21094 NM_014520 10514 Hs.22824 NM_014520 HPRD:05349 MYBBP1A P160|PAP2 MYB binding protein (P160) 1a protein-coding 13-PTNLD9-TUMOR_peak_17713 chr15 77770525 77770631 + 6.97437 NA intron (NM_018200, intron 8 of 10) intron (NM_018200, intron 8 of 10) 57335 NM_018200 10363 Hs.69594 NM_018200 HPRD:16116 HMG20A HMGX1|HMGXB1 high mobility group 20A protein-coding 13-PTNLD9-TUMOR_peak_38095 chr4 23616354 23616464 + 6.97437 NA Intergenic L1HS|LINE|L1 -151683 NR_039674 100616252 NR_039674 miRBase:MI0016815 MIR548AJ2 - microRNA 548aj-2 ncRNA 13-PTNLD9-TUMOR_peak_30871 chr20 33929349 33929450 + 6.97437 NA intron (NM_018244, intron 7 of 9) intron (NM_018244, intron 7 of 9) -49174 NM_178468 128876 Hs.592149 NM_178468 HPRD:12743 FAM83C C20orf128|dJ614O4.7 family with sequence similarity 83, member C protein-coding 13-PTNLD9-TUMOR_peak_27070 chr2 64632965 64633301 + 6.97437 NA Intergenic Intergenic -48194 NM_014181 29094 Hs.372208 NM_014181 HPRD:13708 LGALSL GRP lectin, galactoside-binding-like protein-coding 13-PTNLD9-TUMOR_peak_6223 chr10 158269 158381 + 6.97437 NA Intergenic Intergenic -22080 NM_006624 10771 Hs.292265 NM_006624 HPRD:09830 ZMYND11 BRAM1|BS69 zinc finger, MYND-type containing 11 protein-coding 13-PTNLD9-TUMOR_peak_50084 chr8 11422186 11422289 + 6.97437 NA TTS (NM_001715) TTS (NM_001715) -11807 NR_040035 83655 Hs.742430 NR_040035 ENSG00000170983 LINC00208 C8orf14|NCRNA00208|VIR35 long intergenic non-protein coding RNA 208 ncRNA 13-PTNLD9-TUMOR_peak_13409 chr12 80947248 80947343 + 6.97437 NA intron (NM_001145026, intron 22 of 41) intron (NM_001145026, intron 22 of 41) 109169 NM_001145026 374462 Hs.539284 NM_001145026 PTPRQ DFNB84|DFNB84A|PTPGMC1|R-PTP-Q protein tyrosine phosphatase, receptor type, Q protein-coding 13-PTNLD9-TUMOR_peak_34728 chr3 56792725 56792855 + 6.97437 NA intron (NM_001289698, intron 3 of 10) intron (NM_001289698, intron 3 of 10) 16955 NM_001128616 50650 Hs.476402 NM_019555 HPRD:12480 ARHGEF3 GEF3|STA3|XPLN Rho guanine nucleotide exchange factor (GEF) 3 protein-coding 13-PTNLD9-TUMOR_peak_32375 chr21 42431840 42432007 + 6.97437 NA Intergenic L2a|LINE|L2 88068 NR_024100 284835 Hs.106234 NR_024100 ENSG00000226496 LINC00323 C21orf130|NCRNA00323|PRED42 long intergenic non-protein coding RNA 323 ncRNA 13-PTNLD9-TUMOR_peak_18468 chr16 10044623 10044810 + 6.97437 NA intron (NM_000833, intron 3 of 13) MIRb|SINE|MIR 231208 NM_001134408 2903 Hs.411472 NM_000833 HPRD:00698 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate receptor, ionotropic, N-methyl D-aspartate 2A protein-coding 13-PTNLD9-TUMOR_peak_51804 chr8 123771276 123771379 + 6.97437 NA Intergenic Intergenic -22574 NM_014943 22882 Hs.377090 NM_014943 HPRD:16458 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 13-PTNLD9-TUMOR_peak_26094 chr2 10545058 10545205 + 6.96817 NA intron (NM_001258357, intron 2 of 4) MIRc|SINE|MIR 36241 NM_001258359 3241 Hs.580427 NM_002149 HPRD:02564 HPCAL1 BDR1|HLP2|VILIP-3 hippocalcin-like 1 protein-coding 13-PTNLD9-TUMOR_peak_24426 chr19 18852717 18852821 + 6.96565 NA intron (NM_001098482, intron 1 of 14) intron (NM_001098482, intron 1 of 14) 49345 NM_000095 1311 Hs.1584 NM_000095 HPRD:02632 COMP EDM1|EPD1|MED|PSACH|THBS5 cartilage oligomeric matrix protein protein-coding 13-PTNLD9-TUMOR_peak_50038 chr8 8247603 8247756 + 6.96565 NA Intergenic Intergenic -8335 NM_001080826 157285 Hs.583863 NM_001080826 ENSG00000182319 SGK223 PRAGMIN homolog of rat pragma of Rnd2 protein-coding 13-PTNLD9-TUMOR_peak_5801 chr1 230963042 230963266 + 6.96565 NA Intergenic Intergenic 28628 NM_001136495 84886 Hs.520494 NM_032800 HPRD:13359 C1orf198 - chromosome 1 open reading frame 198 protein-coding 13-PTNLD9-TUMOR_peak_13004 chr12 56732496 56732643 + 6.96565 NA promoter-TSS (NM_016584) promoter-TSS (NM_016584) -94 NM_016584 51561 Hs.98309 NM_016584 HPRD:12026 IL23A IL-23|IL-23A|IL23P19|P19|SGRF interleukin 23, alpha subunit p19 protein-coding 13-PTNLD9-TUMOR_peak_15971 chr14 62087325 62087582 + 6.96565 NA intron (NR_039985, intron 1 of 2) intron (NR_039985, intron 1 of 2) -50082 NR_110416 101927780 Hs.254789 NR_110416 ENSG00000250548 LOC101927780 - uncharacterized LOC101927780 ncRNA 13-PTNLD9-TUMOR_peak_10739 chr11 78130523 78130624 + 6.96565 NA Intergenic Intergenic -1705 NM_080491 9846 Hs.429434 NM_012296 HPRD:05866 GAB2 - GRB2-associated binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_22261 chr17 79269963 79270081 + 6.96565 NA promoter-TSS (NM_001037984) promoter-TSS (NM_001037984) -883 NM_138570 124565 Hs.352240 NM_138570 HPRD:17506 SLC38A10 - solute carrier family 38, member 10 protein-coding 13-PTNLD9-TUMOR_peak_24357 chr19 17976667 17976838 + 6.95831 NA Intergenic MIRb|SINE|MIR 3355 NR_000012 26780 Hs.684118 NR_000012 SNORA68 RNU68|U68 small nucleolar RNA, H/ACA box 68 snoRNA 13-PTNLD9-TUMOR_peak_10173 chr11 64611012 64611275 + 6.95831 NA intron (NM_017525, intron 1 of 36) intron (NM_017525, intron 1 of 36) 898 NM_017525 55561 Hs.293590 NM_017525 HPRD:13013 CDC42BPG DMPK2|HSMDPKIN|KAPPA-200|MRCKG|MRCKgamma CDC42 binding protein kinase gamma (DMPK-like) protein-coding 13-PTNLD9-TUMOR_peak_38829 chr4 88000414 88000530 + 6.95809 NA intron (NM_001166693, intron 4 of 20) intron (NM_001166693, intron 4 of 20) 72319 NM_005935 4299 Hs.480190 NM_005935 HPRD:08871 AFF1 AF4|MLLT2|PBM1 AF4/FMR2 family, member 1 protein-coding 13-PTNLD9-TUMOR_peak_21317 chr17 45786466 45786569 + 6.95809 NA exon (NM_014726, exon 8 of 9) exon (NM_014726, exon 8 of 9) 13887 NM_014726 9755 Hs.94790 NM_014726 HPRD:12239 TBKBP1 ProSAPiP2|SINTBAD TBK1 binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_13463 chr12 90363033 90363127 + 6.95809 NA Intergenic L2c|LINE|L2 260348 NR_028138 338758 Hs.601766 NR_028138 ENSG00000271614 LINC00936 - long intergenic non-protein coding RNA 936 ncRNA 13-PTNLD9-TUMOR_peak_30541 chr20 18952368 18952467 + 6.95809 NA Intergenic Intergenic -141578 NM_001242671 100128496 Hs.664484 NM_001242671 ENSG00000149443 C20orf78 dJ1068E13.1 chromosome 20 open reading frame 78 protein-coding 13-PTNLD9-TUMOR_peak_9638 chr11 44656160 44656496 + 6.95809 NA Intergenic Intergenic 69187 NM_001024844 3732 Hs.527778 NM_002231 CD82 4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27 CD82 molecule protein-coding 13-PTNLD9-TUMOR_peak_37988 chr4 10585886 10586000 + 6.95809 NA intron (NM_052964, intron 4 of 18) intron (NM_052964, intron 4 of 18) 100443 NM_052964 116449 Hs.678910 NM_052964 CLNK MIST cytokine-dependent hematopoietic cell linker protein-coding 13-PTNLD9-TUMOR_peak_20443 chr17 8329513 8329607 + 6.95809 NA Intergenic L2a|LINE|L2 -9610 NM_001025579 81565 Hs.372123 NM_030808 HPRD:06340 NDEL1 EOPA|MITAP1|NDE1L1|NDE2|NUDEL nudE neurodevelopment protein 1-like 1 protein-coding 13-PTNLD9-TUMOR_peak_3130 chr1 121260868 121261170 + 6.95809 NA non-coding (NR_003955, exon 1 of 8) non-coding (NR_003955, exon 1 of 8) 109 NR_003955 647121 Hs.697682 NR_003955 EMBP1 - embigin pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_33996 chr3 17646646 17646747 + 6.95809 NA intron (NM_001134381, intron 3 of 23) intron (NM_001134381, intron 3 of 23) 94816 NM_001134381 9779 Hs.475629 NM_014744 HPRD:10262 TBC1D5 - TBC1 domain family, member 5 protein-coding 13-PTNLD9-TUMOR_peak_17308 chr15 52821334 52821467 + 6.95809 NA promoter-TSS (NM_000259) promoter-TSS (NM_000259) -153 NM_000259 4644 Hs.21213 NM_000259 HPRD:01179 MYO5A GS1|MYH12|MYO5|MYR12 myosin VA (heavy chain 12, myoxin) protein-coding 13-PTNLD9-TUMOR_peak_38628 chr4 77468100 77468258 + 6.95809 NA intron (NM_020859, intron 1 of 10) intron (NM_020859, intron 1 of 10) -26542 NR_039654 100616299 NR_039654 MIR4450 - microRNA 4450 ncRNA 13-PTNLD9-TUMOR_peak_6292 chr10 3145280 3145571 + 6.95809 NA intron (NM_001242339, intron 6 of 23) intron (NM_001242339, intron 6 of 23) 34606 NM_001242339 5214 Hs.26010 NM_002627 HPRD:01384 PFKP ATP-PFK|PFK-C|PFK-P|PFKF phosphofructokinase, platelet protein-coding 13-PTNLD9-TUMOR_peak_54193 chr9 101137125 101137259 + 6.95809 NA intron (NM_005458, intron 11 of 18) MER68|LTR|ERVL -119189 NM_001267571 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family, member 2 protein-coding 13-PTNLD9-TUMOR_peak_53322 chr9 43685118 43685314 + 6.95809 NA promoter-TSS (NR_111893) promoter-TSS (NR_111893) 20 NR_111893 643827 Hs.521495 NM_001012280 CNTNAP3P2 - contactin associated protein-like 3 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_15886 chr14 58397386 58397569 + 6.95809 NA Intergenic Intergenic -64885 NM_001206920 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35, member F4 protein-coding 13-PTNLD9-TUMOR_peak_56612 chrX 150012615 150012813 + 6.95809 NA intron (NM_031462, intron 1 of 10) intron (NM_031462, intron 1 of 10) 54575 NM_001184808 83692 Hs.522805 NM_031462 ENSG00000102181 CD99L2 CD99B|MIC2L1 CD99 molecule-like 2 protein-coding 13-PTNLD9-TUMOR_peak_40584 chr5 34609087 34609181 + 6.95809 NA Intergenic Intergenic -47299 NM_015577 26064 Hs.431400 NM_015577 HPRD:09416 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 13-PTNLD9-TUMOR_peak_43744 chr6 10463850 10464109 + 6.95809 NA Intergenic L2a|LINE|L2 24029 NR_049872 100846998 NR_049872 miRBase:MI0019294 MIR5689 - microRNA 5689 ncRNA 13-PTNLD9-TUMOR_peak_23835 chr19 8318003 8318097 + 6.95809 NA intron (NM_024552, intron 3 of 11) intron (NM_024552, intron 3 of 11) 43833 NM_024552 79603 Hs.515111 NM_024552 HPRD:13962 CERS4 LASS4|Trh1 ceramide synthase 4 protein-coding 13-PTNLD9-TUMOR_peak_1050 chr1 34558438 34558538 + 6.95809 NA intron (NM_052896, intron 1 of 69) L1PA3|LINE|L1 72387 NM_001281956 114784 Hs.656915 NM_052896 HPRD:13094 CSMD2 dJ1007G16.1|dJ1007G16.2|dJ947L8.1 CUB and Sushi multiple domains 2 protein-coding 13-PTNLD9-TUMOR_peak_28540 chr2 134644389 134644597 + 6.95005 NA Intergenic Intergenic -240203 NR_037450 100500878 NR_037450 miRBase:MI0016080 MIR3679 - microRNA 3679 ncRNA 13-PTNLD9-TUMOR_peak_48535 chr7 100303062 100303182 + 6.95005 NA promoter-TSS (NM_005837) promoter-TSS (NM_005837) -554 NM_005837 10248 Hs.416994 NM_005837 HPRD:09357 POP7 0610037N12Rik|RPP2|RPP20 processing of precursor 7, ribonuclease P/MRP subunit (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_467 chr1 13433415 13434069 + 6.95005 NA intron (NM_001099850, intron 1 of 2) SVA_E|Other|Other 9739 NM_001300891 101929983 NM_001300891 LOC101929983 - PRAME family member 9/15-like protein-coding 13-PTNLD9-TUMOR_peak_45408 chr6 58287643 58287804 + 6.94766 NA promoter-TSS (NR_003660) promoter-TSS (NR_003660) 1 NR_125729 375513 Hs.561539 NM_206908 GUSBP4 C6orf216|GUSBL2|SMA3-L|SMAC3L|b55C20.2 glucuronidase, beta pseudogene 4 pseudo 13-PTNLD9-TUMOR_peak_1398 chr1 42420415 42420596 + 6.94766 NA intron (NR_038261, intron 1 of 3) MIRb|SINE|MIR -36009 NR_038260 59269 Hs.403972 NM_024503 HPRD:09442 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 13-PTNLD9-TUMOR_peak_51820 chr8 124169443 124169634 + 6.94766 NA Intergenic tRNA-Met_|tRNA|tRNA -21749 NM_207006 84985 Hs.379821 NM_032899 HPRD:17489 FAM83A BJ-TSA-9 family with sequence similarity 83, member A protein-coding 13-PTNLD9-TUMOR_peak_33854 chr3 13692098 13692212 + 6.94766 NA promoter-TSS (NR_027103) promoter-TSS (NR_027103) -66 NR_027103 285375 Hs.319969 NR_027103 ENSG00000224514 LINC00620 - long intergenic non-protein coding RNA 620 ncRNA 13-PTNLD9-TUMOR_peak_24150 chr19 13965798 13965903 + 6.94765 NA Intergenic AluJb|SINE|Alu -18377 NR_029495 407010 NR_029495 miRBase:MI0000079 MIR23A MIRN23A|hsa-mir-23a|miRNA23A microRNA 23a ncRNA 13-PTNLD9-TUMOR_peak_20657 chr17 20370911 20371176 + 6.94703 NA promoter-TSS (NM_001042685) promoter-TSS (NM_001042685) -195 NM_001042685 284194 Hs.462402 NM_001042685 ENSG00000170298 LGALS9B - lectin, galactoside-binding, soluble, 9B protein-coding 13-PTNLD9-TUMOR_peak_47497 chr7 51412171 51412309 + 6.94703 NA Intergenic Plat_L3|LINE|CR1 -27725 NM_001287436 23242 Hs.99141 NM_015198 HPRD:10843 COBL - cordon-bleu WH2 repeat protein protein-coding 13-PTNLD9-TUMOR_peak_26323 chr2 25049147 25049301 + 6.94703 NA intron (NM_004036, intron 14 of 20) intron (NM_004036, intron 14 of 20) 32893 NM_024322 79172 Hs.731569 NM_024322 HPRD:14414 CENPO CENP-O|ICEN-36|MCM21R centromere protein O protein-coding 13-PTNLD9-TUMOR_peak_52119 chr8 132854004 132854166 + 6.94703 NA Intergenic Intergenic -62271 NM_015137 23167 Hs.204564 NM_015137 HPRD:17179 EFR3A - EFR3 homolog A (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_950 chr1 32047543 32047648 + 6.94703 NA intron (NM_001204414, intron 3 of 10) L2a|LINE|L2 3849 NM_001204415 64129 Hs.199368 NM_022164 HPRD:07122 TINAGL1 ARG1|LCN7|LIECG3|TINAGRP tubulointerstitial nephritis antigen-like 1 protein-coding 13-PTNLD9-TUMOR_peak_31846 chr20 62853555 62853710 + 6.94703 NA intron (NM_004535, intron 14 of 22) intron (NM_004535, intron 14 of 22) -33416 NM_018257 55251 Hs.744845 NM_018257 HPRD:12764 PCMTD2 C20orf36 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_26127 chr2 11261701 11261809 + 6.94703 NA intron (NR_040080, intron 5 of 8) intron (NR_040080, intron 5 of 8) 10547 NR_040080 285150 Hs.329841 NM_182586 HPRD:08158 FLJ33534 - uncharacterized LOC285150 ncRNA 13-PTNLD9-TUMOR_peak_21402 chr17 47645378 47645495 + 6.94703 NA intron (NR_103773, intron 1 of 2) CpG 5990 NR_103773 100288866 Hs.720309 NR_103773 ENSG00000249906 LOC100288866 - uncharacterized LOC100288866 ncRNA 13-PTNLD9-TUMOR_peak_16242 chr14 74237099 74237247 + 6.94703 NA intron (NM_001043318, intron 1 of 11) intron (NM_001043318, intron 1 of 11) -10172 NM_194278 91748 Hs.594157 NM_194278 HPRD:12648 ELMSAN1 C14orf117|C14orf43|LSR68|c14_5541 ELM2 and Myb/SANT-like domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_30782 chr20 31364685 31364779 + 6.94703 NA intron (NM_006892, intron 1 of 22) intron (NM_006892, intron 1 of 22) -2926 NM_175850 1789 Hs.643024 NM_006892 HPRD:04209 DNMT3B ICF|ICF1|M.HsaIIIB DNA (cytosine-5-)-methyltransferase 3 beta protein-coding 13-PTNLD9-TUMOR_peak_52383 chr8 143528989 143529089 + 6.94703 NA Intergenic Intergenic -16338 NM_001702 575 Hs.194654 NM_001702 HPRD:04062 BAI1 GDAIF brain-specific angiogenesis inhibitor 1 protein-coding 13-PTNLD9-TUMOR_peak_17461 chr15 65597128 65597393 + 6.94703 NA Intergenic Intergenic -18242 NM_017851 54956 Hs.30634 NM_017851 HPRD:07919 PARP16 ARTD15|C15orf30|pART15 poly (ADP-ribose) polymerase family, member 16 protein-coding 13-PTNLD9-TUMOR_peak_8866 chr11 3663349 3663462 + 6.94703 NA 5' UTR (NM_053017, exon 1 of 4) 5' UTR (NM_053017, exon 1 of 4) 141 NR_123732 116969 Hs.125680 NM_053017 HPRD:12493 ART5 ARTC5 ADP-ribosyltransferase 5 protein-coding 13-PTNLD9-TUMOR_peak_39691 chr4 154407875 154408242 + 6.94287 NA intron (NM_015196, intron 3 of 34) intron (NM_015196, intron 3 of 34) 20560 NM_015196 23240 Hs.732450 NM_015196 HPRD:13823 KIAA0922 TMEM131L KIAA0922 protein-coding 13-PTNLD9-TUMOR_peak_23500 chr18 74839885 74840201 + 6.94287 NA intron (NM_001025101, intron 1 of 8) L1MD2|LINE|L1 4731 NM_001025100 4155 Hs.551713 NM_002385 HPRD:01158 MBP - myelin basic protein protein-coding 13-PTNLD9-TUMOR_peak_53981 chr9 93959626 93959737 + 6.94287 NA Intergenic Intergenic -122267 NR_033912 100129316 Hs.458154 NR_033912 LOC100129316 - uncharacterized LOC100129316 ncRNA 13-PTNLD9-TUMOR_peak_53448 chr9 67022408 67022591 + 6.93767 NA intron (NR_046175, intron 3 of 3) intron (NR_046175, intron 3 of 3) 9573 NR_046175 286297 Hs.645503 NR_046175 ENSG00000182021 LOC286297 - uncharacterized LOC286297 ncRNA 13-PTNLD9-TUMOR_peak_44767 chr6 35338105 35338467 + 6.93540 NA intron (NM_001171819, intron 2 of 6) intron (NM_001171819, intron 2 of 6) 27951 NM_177435 5467 Hs.696032 NM_006238 HPRD:02679 PPARD FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB peroxisome proliferator-activated receptor delta protein-coding 13-PTNLD9-TUMOR_peak_44464 chr6 30594570 30594681 + 6.93540 NA promoter-TSS (NM_001031722) promoter-TSS (NM_001031722) 10 NM_001254952 79969 Hs.654798 NM_024909 HPRD:12850 ATAT1 C6orf134|MEC17|Nbla00487|TAT alpha tubulin acetyltransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_49998 chr8 7105896 7106031 + 6.93540 NA Intergenic HERVE-int|LTR|ERV1 15051 NR_027000 349196 Hs.559040 NM_001025473 LINC00965 - long intergenic non-protein coding RNA 965 ncRNA 13-PTNLD9-TUMOR_peak_5799 chr1 230960801 230961047 + 6.93540 NA Intergenic Intergenic 30858 NM_001136495 84886 Hs.520494 NM_032800 HPRD:13359 C1orf198 - chromosome 1 open reading frame 198 protein-coding 13-PTNLD9-TUMOR_peak_18798 chr16 23835223 23835376 + 6.93540 NA Intergenic Intergenic -12001 NM_002738 5579 Hs.460355 NM_002738 HPRD:01499 PRKCB PKC-beta|PKCB|PRKCB1|PRKCB2 protein kinase C, beta protein-coding 13-PTNLD9-TUMOR_peak_5217 chr1 205513275 205513369 + 6.93540 NA Intergenic Intergenic 12441 NR_027086 284578 Hs.537020 NR_027086 LOC284578 - uncharacterized LOC284578 ncRNA 13-PTNLD9-TUMOR_peak_7550 chr10 69318301 69318395 + 6.93540 NA intron (NM_001291133, intron 4 of 8) L1PA5|LINE|L1 107095 NM_001127384 29119 Hs.21375 NM_013266 HPRD:09639 CTNNA3 ARVD13|VR22 catenin (cadherin-associated protein), alpha 3 protein-coding 13-PTNLD9-TUMOR_peak_31105 chr20 42136285 42136570 + 6.93540 NA intron (NM_032107, intron 1 of 21) CpG 107 NM_032107 26013 Hs.709356 NM_015478 HPRD:16387 L3MBTL1 H-L(3)MBT|L3MBTL|ZC2HC3|dJ138B7.3 l(3)mbt-like 1 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_36197 chr3 141131170 141131302 + 6.93540 NA intron (NM_001080412, intron 7 of 7) intron (NM_001080412, intron 7 of 7) -74690 NM_006506 5922 Hs.98445 NM_006506 ENSG00000155903 RASA2 GAP1M RAS p21 protein activator 2 protein-coding 13-PTNLD9-TUMOR_peak_31151 chr20 43376194 43376474 + 6.93540 NA intron (NM_022358, intron 1 of 1) intron (NM_022358, intron 1 of 1) 1846 NM_022358 60598 Hs.528664 NM_022358 KCNK15 K2p15.1|KCNK11|KCNK14|KT3.3|TASK-5|TASK5|dJ781B1.1 potassium channel, subfamily K, member 15 protein-coding 13-PTNLD9-TUMOR_peak_20475 chr17 9970925 9971025 + 6.93066 NA intron (NM_201433, intron 1 of 13) intron (NM_201433, intron 1 of 13) -30911 NM_201432 8522 Hs.462214 NM_003644 HPRD:16011 GAS7 MLL/GAS7 growth arrest-specific 7 protein-coding 13-PTNLD9-TUMOR_peak_22834 chr18 24236158 24236321 + 6.93066 NA intron (NM_001258222, intron 1 of 4) CpG 1126 NM_001258222 284252 Hs.526630 NM_198991 HPRD:11059 KCTD1 C18orf5|SENS potassium channel tetramerization domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_27034 chr2 62534130 62534310 + 6.93066 NA Intergenic Intergenic 101259 NR_049824 100847087 NR_049824 miRBase:MI0018171 MIR5192 - microRNA 5192 ncRNA 13-PTNLD9-TUMOR_peak_38576 chr4 74486088 74486256 + 6.93066 NA exon (NM_001270392, exon 1 of 10) exon (NM_001270392, exon 1 of 10) 115 NM_177532 166824 Hs.529677 NM_177532 HPRD:15220 RASSF6 - Ras association (RalGDS/AF-6) domain family member 6 protein-coding 13-PTNLD9-TUMOR_peak_25318 chr19 49178766 49178860 + 6.93066 NA intron (NR_004401, intron 4 of 4) intron (NR_004401, intron 4 of 4) -2549 NM_145807 126147 Hs.326217 NM_145807 HPRD:14031 NTN5 - netrin 5 protein-coding 13-PTNLD9-TUMOR_peak_13058 chr12 58282324 58282462 + 6.93066 NA Intergenic Intergenic -41646 NM_005730 10106 Hs.524530 NM_005730 HPRD:12281 CTDSP2 OS4|PSR2|SCP2 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2 protein-coding 13-PTNLD9-TUMOR_peak_34553 chr3 49538373 49538670 + 6.93066 NA intron (NM_001165928, intron 4 of 5) intron (NM_001165928, intron 4 of 5) 30956 NM_001177644 1605 Hs.76111 NM_004393 HPRD:00546 DAG1 156DAG|A3a|AGRNR|DAG|MDDGC7|MDDGC9 dystroglycan 1 (dystrophin-associated glycoprotein 1) protein-coding 13-PTNLD9-TUMOR_peak_12039 chr12 7186620 7186833 + 6.93066 NA TTS (NM_001733) TTS (NM_001733) 18746 NM_201442 716 Hs.458355 NM_001734 HPRD:00397 C1S - complement component 1, s subcomponent protein-coding 13-PTNLD9-TUMOR_peak_38612 chr4 76769500 76769659 + 6.93066 NA Intergenic Intergenic 54102 NM_006239 5470 Hs.290873 NM_006239 HPRD:03771 PPEF2 PPP7CB protein phosphatase, EF-hand calcium binding domain 2 protein-coding 13-PTNLD9-TUMOR_peak_11798 chr12 1585208 1585395 + 6.93066 NA intron (NR_027949, intron 15 of 15) AluY|SINE|Alu -24356 NR_028415 100292680 Hs.391695 NR_028415 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 13-PTNLD9-TUMOR_peak_50225 chr8 20810986 20811085 + 6.93066 NA Intergenic MLT1E3|LTR|ERVL-MaLR -20462 NR_033894 286114 Hs.651884 NR_033894 ENSG00000253199 LOC286114 - uncharacterized LOC286114 ncRNA 13-PTNLD9-TUMOR_peak_7686 chr10 73426839 73426992 + 6.93066 NA intron (NM_001171930, intron 13 of 30) intron (NM_001171930, intron 13 of 30) 52663 NM_001164375 414152 Hs.568788 NM_001164375 ENSG00000214688 C10orf105 - chromosome 10 open reading frame 105 protein-coding 13-PTNLD9-TUMOR_peak_12907 chr12 54089280 54089391 + 6.93066 NA Intergenic CpG -18823 NM_001002031 517 Hs.524464 NM_005176 HPRD:04429 ATP5G2 ATP5A ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9) protein-coding 13-PTNLD9-TUMOR_peak_30952 chr20 35820805 35820904 + 6.93066 NA intron (NM_001135771, intron 2 of 16) intron (NM_001135771, intron 2 of 16) -12863 NM_213631 140699 Hs.349125 NM_152503 HPRD:12745 MROH8 C20orf131|C20orf132|dJ621N11.3|dJ621N11.4 maestro heat-like repeat family member 8 protein-coding 13-PTNLD9-TUMOR_peak_56186 chrX 77165984 77166206 + 6.93066 NA promoter-TSS (NM_001282224) promoter-TSS (NM_001282224) -58 NM_001282224 538 Hs.496414 NM_000052 HPRD:02054 ATP7A DSMAX|MK|MNK|SMAX3 ATPase, Cu++ transporting, alpha polypeptide protein-coding 13-PTNLD9-TUMOR_peak_2120 chr1 67680538 67680684 + 6.93066 NA intron (NM_144701, intron 6 of 10) LTR2B|LTR|ERV1 48442 NM_144701 149233 Hs.677426 NM_144701 HPRD:16249 IL23R - interleukin 23 receptor protein-coding 13-PTNLD9-TUMOR_peak_22535 chr18 9017203 9017312 + 6.93066 NA Intergenic Intergenic -85371 NM_021074 4729 Hs.464572 NM_021074 HPRD:02757 NDUFV2 CI-24k NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa protein-coding 13-PTNLD9-TUMOR_peak_5174 chr1 204797705 204797851 + 6.93066 NA promoter-TSS (NM_001160333) promoter-TSS (NM_001160333) -4 NM_015090 23114 Hs.13349 NM_015090 HPRD:12372 NFASC NF|NRCAML neurofascin protein-coding 13-PTNLD9-TUMOR_peak_51350 chr8 97592406 97592649 + 6.93066 NA intron (NM_002998, intron 1 of 4) intron (NM_002998, intron 1 of 4) -64928 NM_016134 10404 Hs.156178 NM_016134 HPRD:07140 CPQ LDP|PGCP carboxypeptidase Q protein-coding 13-PTNLD9-TUMOR_peak_45746 chr6 92589178 92589415 + 6.93066 NA Intergenic Intergenic -189150 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility candidate 6 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_50276 chr8 22131804 22131945 + 6.93066 NA promoter-TSS (NM_018068) promoter-TSS (NM_018068) -936 NM_018068 55124 Hs.614809 NM_018068 HPRD:11434 PIWIL2 CT80|HILI|PIWIL1L|mili piwi-like RNA-mediated gene silencing 2 protein-coding 13-PTNLD9-TUMOR_peak_997 chr1 32866517 32866704 + 6.93066 NA Intergenic Intergenic -6548 NM_018045 55108 Hs.353454 NM_018045 HPRD:07658 BSDC1 - BSD domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_28662 chr2 147632019 147632162 + 6.93066 NA Intergenic MamSINE1|SINE|tRNA 287465 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein, cytoplasmic 1 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_8363 chr10 115235265 115235376 + 6.93066 NA Intergenic Intergenic -75270 NM_001177660 3026 Hs.422542 NM_004132 HPRD:04890 HABP2 FSAP|HABP|HGFAL|PHBP hyaluronan binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_54982 chr9 136283140 136283237 + 6.93066 NA promoter-TSS (NM_001279349) promoter-TSS (NM_001279349) 28 NR_103996 57109 Hs.438409 NM_020385 HPRD:04239 REXO4 REX4|XPMC2|XPMC2H REX4, RNA exonuclease 4 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_43938 chr6 16250347 16250608 + 6.93066 NA intron (NM_006877, intron 2 of 8) intron (NM_006877, intron 2 of 8) 11666 NM_006877 2766 Hs.484741 NM_006877 HPRD:00754 GMPR GMPR1 guanosine monophosphate reductase protein-coding 13-PTNLD9-TUMOR_peak_38143 chr4 26592471 26592566 + 6.93066 NA intron (NM_001292054, intron 1 of 17) FLAM_A|SINE|Alu 6972 NM_018317 55296 Hs.479403 NM_018317 HPRD:07730 TBC1D19 - TBC1 domain family, member 19 protein-coding 13-PTNLD9-TUMOR_peak_17288 chr15 52024079 52024241 + 6.93066 NA intron (NM_001143917, intron 1 of 2) intron (NM_001143917, intron 1 of 2) 6160 NM_153374 256586 Hs.603629 NM_153374 HPRD:17531 LYSMD2 - LysM, putative peptidoglycan-binding, domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_8449 chr10 120950001 120950125 + 6.93066 NA Intergenic L2b|LINE|L2 -11686 NM_006793 10935 Hs.523302 NM_006793 HPRD:05305 PRDX3 AOP-1|AOP1|HBC189|MER5|PRO1748|SP-22|prx-III peroxiredoxin 3 protein-coding 13-PTNLD9-TUMOR_peak_13903 chr12 113574762 113574949 + 6.92535 NA promoter-TSS (NM_001193520) promoter-TSS (NM_001193520) -811 NM_001193520 8437 Hs.528693 NM_004658 HPRD:04986 RASAL1 RASAL RAS protein activator like 1 (GAP1 like) protein-coding 13-PTNLD9-TUMOR_peak_27715 chr2 96814311 96814465 + 6.92528 NA Intergenic Intergenic -3209 NM_004418 1844 Hs.1183 NM_004418 HPRD:04348 DUSP2 PAC-1|PAC1 dual specificity phosphatase 2 protein-coding 13-PTNLD9-TUMOR_peak_6078 chr1 242110797 242110966 + 6.92044 NA Intergenic Intergenic -10188 NM_001290693 441925 Hs.731347 NM_001290693 BECN1P1 BECN1L1|BECN2 beclin 1, autophagy related, pseudogene 1 protein-coding 13-PTNLD9-TUMOR_peak_9421 chr11 32140223 32140400 + 6.92044 NA Intergenic AluJr|SINE|Alu 27834 NM_002901 5954 Hs.97887 NM_002901 HPRD:04111 RCN1 HEL-S-84|PIG20|RCAL|RCN reticulocalbin 1, EF-hand calcium binding domain protein-coding 13-PTNLD9-TUMOR_peak_44253 chr6 26521163 26521272 + 6.92044 NA promoter-TSS (NR_026790) promoter-TSS (NR_026790) -717 NR_026790 493812 Hs.272939 NR_026790 ENSG00000228223 HCG11 bK14H9.3 HLA complex group 11 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_48059 chr7 76128527 76128625 + 6.92044 NA intron (NM_001102594, intron 6 of 10) MIRb|SINE|MIR -11164 NM_182684 80761 Hs.488861 NM_030570 HPRD:15626 UPK3B P35|UP3B|UPIIIB uroplakin 3B protein-coding 13-PTNLD9-TUMOR_peak_43662 chr6 7052164 7052425 + 6.92044 NA Intergenic CpG -55536 NM_001168344 6239 Hs.298248 NM_002955 HPRD:03733 RREB1 FINB|HNT|LZ321|RREB-1|Zep-1 ras responsive element binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_28692 chr2 149955304 149955506 + 6.92035 NA intron (NM_177964, intron 1 of 6) intron (NM_177964, intron 1 of 6) 60424 NM_177964 130576 Hs.357567 NM_177964 HPRD:14045 LYPD6B CT116|LYPD7 LY6/PLAUR domain containing 6B protein-coding 13-PTNLD9-TUMOR_peak_34977 chr3 72987666 72987942 + 6.92035 NA intron (NM_001080393, intron 3 of 6) intron (NM_001080393, intron 3 of 6) 50419 NM_001080393 727936 Hs.710275 NM_001080393 GXYLT2 GLT8D4 glucoside xylosyltransferase 2 protein-coding 13-PTNLD9-TUMOR_peak_31262 chr20 45770683 45770855 + 6.92035 NA intron (NM_005244, intron 9 of 15) MER58C|DNA|hAT-Charlie -24840 NR_037410 100500814 NR_037410 MIR3616 - microRNA 3616 ncRNA 13-PTNLD9-TUMOR_peak_54607 chr9 121571422 121571563 + 6.92035 NA Intergenic LTR12C|LTR|ERV1 560247 NM_014618 1620 Hs.532316 NM_014618 HPRD:04181 BRINP1 DBC1|DBCCR1|FAM5A bone morphogenetic protein/retinoic acid inducible neural-specific 1 protein-coding 13-PTNLD9-TUMOR_peak_26302 chr2 23892850 23893033 + 6.92035 NA intron (NM_052920, intron 5 of 13) intron (NM_052920, intron 5 of 13) 257043 NR_125717 54454 Hs.467862 NM_017552 ENSG00000119778 ATAD2B - ATPase family, AAA domain containing 2B protein-coding 13-PTNLD9-TUMOR_peak_43580 chr6 4292404 4292498 + 6.92035 NA Intergenic Intergenic 156145 NR_103764 100507506 Hs.665936 NR_103764 ENSG00000234817 LOC100507506 - uncharacterized LOC100507506 ncRNA 13-PTNLD9-TUMOR_peak_4847 chr1 194014682 194014776 + 6.92035 NA Intergenic Intergenic 740854 NR_125789 101929184 Hs.146728 NR_125789 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 13-PTNLD9-TUMOR_peak_54830 chr9 130764105 130764275 + 6.92035 NA Intergenic Intergenic -21378 NM_001035254 399665 Hs.535972 NM_203305 HPRD:13262 FAM102A C9orf132|EEIG1|SYM-3A|bA203J24.7 family with sequence similarity 102, member A protein-coding 13-PTNLD9-TUMOR_peak_13213 chr12 66887732 66887854 + 6.92035 NA intron (NM_021150, intron 7 of 23) intron (NM_021150, intron 7 of 23) 185132 NM_001178074 23426 Hs.505946 NM_021150 ENSG00000155974 GRIP1 GRIP glutamate receptor interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_929 chr1 31448262 31448366 + 6.92035 NA intron (NM_001020658, intron 9 of 21) AluJb|SINE|Alu -7230 NR_003066 692200 NR_003066 SNORD85 HBII-251 small nucleolar RNA, C/D box 85 snoRNA 13-PTNLD9-TUMOR_peak_2173 chr1 69569024 69569232 + 6.92035 NA Intergenic Intergenic -606224 NM_001114120 55635 Hs.445098 NM_017779 HPRD:10879 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_37051 chr3 186132089 186132195 + 6.92035 NA Intergenic Intergenic -52119 NM_001080744 1608 Hs.683449 NM_001346 HPRD:03510 DGKG DAGK3|DGK-GAMMA diacylglycerol kinase, gamma 90kDa protein-coding 13-PTNLD9-TUMOR_peak_29261 chr2 182258305 182258420 + 6.92035 NA Intergenic L2|LINE|L2 -63257 NM_000885 3676 Hs.440955 NM_000885 HPRD:01894 ITGA4 CD49D|IA4 integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor) protein-coding 13-PTNLD9-TUMOR_peak_50278 chr8 22240491 22240657 + 6.92017 NA intron (NM_001135153, intron 1 of 8) intron (NM_001135153, intron 1 of 8) 15524 NM_001135153 23516 Hs.491232 NM_015359 HPRD:12288 SLC39A14 LZT-Hs4|NET34|ZIP14|cig19 solute carrier family 39 (zinc transporter), member 14 protein-coding 13-PTNLD9-TUMOR_peak_34502 chr3 48514262 48514779 + 6.91377 NA 5' UTR (NM_001272083, exon 1 of 3) 5' UTR (NM_001272083, exon 1 of 3) 222 NM_001272082 51246 Hs.414579 NM_016479 HPRD:06290 SHISA5 SCOTIN shisa family member 5 protein-coding 13-PTNLD9-TUMOR_peak_31946 chr21 15539537 15539638 + 6.91377 NA intron (NM_198996, intron 4 of 9) L1PA3|LINE|L1 39667 NM_198996 149998 Hs.139907 NM_198996 HPRD:14193 LIPI CT17|LPDL|PLA1C lipase, member I protein-coding 13-PTNLD9-TUMOR_peak_24220 chr19 15288409 15288595 + 6.91377 NA exon (NM_000435, exon 24 of 33) exon (NM_000435, exon 24 of 33) 1659 NR_106853 102465476 NR_106853 MIR6795 hsa-mir-6795 microRNA 6795 ncRNA 13-PTNLD9-TUMOR_peak_44465 chr6 30599633 30599752 + 6.91377 NA intron (NM_001254952, intron 6 of 9).3 L2a|LINE|L2 5029 NM_001031722 79969 Hs.654798 NM_024909 HPRD:12850 ATAT1 C6orf134|MEC17|Nbla00487|TAT alpha tubulin acetyltransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_29461 chr2 198072007 198072101 + 6.91377 NA intron (NM_001195144, intron 1 of 27) intron (NM_001195144, intron 1 of 27) 95189 NR_046837 101927547 Hs.687027 NR_046837 ANKRD44-IT1 - ANKRD44 intronic transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_285 chr1 8469384 8469485 + 6.91377 NA intron (NM_001042682, intron 2 of 12) intron (NM_001042682, intron 2 of 12) 14313 NM_001042682 473 Hs.463041 NM_012102 HPRD:05566 RERE ARG|ARP|ATN1L|DNB1 arginine-glutamic acid dipeptide (RE) repeats protein-coding 13-PTNLD9-TUMOR_peak_7950 chr10 88902410 88902532 + 6.91377 NA intron (NM_019054, intron 2 of 8) intron (NM_019054, intron 2 of 8) 47518 NM_019054 54537 Hs.500419 NM_019054 HPRD:09944 FAM35A FAM35A1|bA163M19.1 family with sequence similarity 35, member A protein-coding 13-PTNLD9-TUMOR_peak_42683 chr5 150827015 150827397 + 6.91377 NA promoter-TSS (NM_078483) promoter-TSS (NM_078483) 43 NM_078483 206358 Hs.269004 NM_078483 HPRD:07584 SLC36A1 Dct1|LYAAT1|PAT1|TRAMD3 solute carrier family 36 (proton/amino acid symporter), member 1 protein-coding 13-PTNLD9-TUMOR_peak_2273 chr1 82147405 82147560 + 6.91377 NA Intergenic Intergenic -17973 NM_001297704 23266 Hs.24212 NM_012302 HPRD:06116 LPHN2 CIRL2|CL2|LEC1|LPHH1 latrophilin 2 protein-coding 13-PTNLD9-TUMOR_peak_275 chr1 8317847 8317982 + 6.91377 NA Intergenic L2a|LINE|L2 -60231 NM_001080397 50651 Hs.463036 NM_001080397 ENSG00000162426 SLC45A1 DNB5 solute carrier family 45, member 1 protein-coding 13-PTNLD9-TUMOR_peak_33753 chr3 10934023 10934197 + 6.90567 NA intron (NM_014229, intron 6 of 13) MIR3|SINE|MIR 76193 NM_014229 6538 Hs.657405 NM_014229 SLC6A11 GAT-3|GAT3|GAT4 solute carrier family 6 (neurotransmitter transporter), member 11 protein-coding 13-PTNLD9-TUMOR_peak_18105 chr15 101668544 101668653 + 6.90567 NA Intergenic Intergenic 123539 NM_014918 22856 Hs.110488 NM_014918 HPRD:10493 CHSY1 CHSY|CSS1|ChSy-1|TPBS chondroitin sulfate synthase 1 protein-coding 13-PTNLD9-TUMOR_peak_32671 chr22 18264330 18264439 + 6.90567 NA Intergenic Intergenic 4328 NR_103718 200298 Hs.517397 NR_103718 ENSG00000269220 LINC00528 C22orf37 long intergenic non-protein coding RNA 528 ncRNA 13-PTNLD9-TUMOR_peak_52602 chr9 707071 707416 + 6.90567 NA 5' UTR (NM_153186, exon 1 of 11) 5' UTR (NM_153186, exon 1 of 11) 437 NM_153186 23189 Hs.306764 NM_015158 HPRD:09651 KANK1 ANKRD15|CPSQ2|KANK KN motif and ankyrin repeat domains 1 protein-coding 13-PTNLD9-TUMOR_peak_7296 chr10 48952501 48952841 + 6.90567 NA promoter-TSS (NR_003611).2 promoter-TSS (NR_003611).2 -42 NR_003611 399761 Hs.571994 NM_001040053 ENSG00000204164 BMS1P5 BMS1LP1|BMS1LP5|BMS1P1|bA556L1.3 BMS1 pseudogene 5 pseudo 13-PTNLD9-TUMOR_peak_5298 chr1 207063514 207063772 + 6.90567 NA Intergenic MER21C|LTR|ERVL -7145 NM_001185156 11009 Hs.58831 NM_006850 HPRD:04995 IL24 C49A|FISP|IL10B|MDA7|MOB5|ST16 interleukin 24 protein-coding 13-PTNLD9-TUMOR_peak_3686 chr1 152487971 152488250 + 6.90567 NA exon (NM_019060, exon 2 of 2) exon (NM_019060, exon 2 of 2) 1132 NM_019060 54544 Hs.110196 NM_019060 HPRD:16635 CRCT1 C1orf42|NICE-1 cysteine-rich C-terminal 1 protein-coding 13-PTNLD9-TUMOR_peak_8493 chr10 123687564 123687714 + 6.90567 NA promoter-TSS (NM_007041) promoter-TSS (NM_007041) -61 NM_001288735 11101 Hs.632080 NM_007041 HPRD:06979 ATE1 - arginyltransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_52555 chr8 146103443 146103703 + 6.90445 NA 3' UTR (NM_001109689, exon 6 of 6) 3' UTR (NM_001109689, exon 6 of 6) 23273 NM_001109689 58500 Hs.532277 NM_021061 HPRD:15758 ZNF250 ZFP647|ZNF647 zinc finger protein 250 protein-coding 13-PTNLD9-TUMOR_peak_46398 chr6 157732568 157732725 + 6.90426 NA intron (NM_018452, intron 3 of 3) intron (NM_018452, intron 3 of 3) 12645 NM_018452 729515 Hs.157212 NM_018452 ENSG00000215712 TMEM242 BM033|C6orf35 transmembrane protein 242 protein-coding 13-PTNLD9-TUMOR_peak_24762 chr19 36000317 36000424 + 6.90056 NA intron (NM_001126057, intron 7 of 10) MER5A1|DNA|hAT-Charlie 1021 NM_001126059 93099 Hs.417795 NM_033317 HPRD:12387 DMKN UNQ729|ZD52F10 dermokine protein-coding 13-PTNLD9-TUMOR_peak_46990 chr7 20276549 20276740 + 6.90056 NA Intergenic L2|LINE|L2 -19631 NM_182762 346389 Hs.598388 NM_182762 HPRD:12381 MACC1 7A5|SH3BP4L metastasis associated in colon cancer 1 protein-coding 13-PTNLD9-TUMOR_peak_32534 chr21 45661182 45661519 + 6.90056 NA promoter-TSS (NM_015259) promoter-TSS (NM_015259) -463 NM_015259 23308 Hs.14155 NM_015259 HPRD:05757 ICOSLG B7-H2|B7H2|B7RP-1|B7RP1|CD275|GL50|ICOS-L|ICOSL|LICOS inducible T-cell co-stimulator ligand protein-coding 13-PTNLD9-TUMOR_peak_32887 chr22 22644451 22644678 + 6.90047 NA Intergenic G-rich|Low_complexity|Low_complexity -7899 NR_027293 96610 Hs.449601 NM_080926 HPRD:14302 BMS1P20 - BMS1 pseudogene 20 pseudo 13-PTNLD9-TUMOR_peak_49487 chr7 143104471 143104633 + 6.89897 NA promoter-TSS (NR_033897) promoter-TSS (NR_033897) -354 NR_033897 285965 Hs.642649 NR_033897 EPHA1-AS1 - EPHA1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_13019 chr12 57030102 57030351 + 6.89690 NA promoter-TSS (NM_013449) promoter-TSS (NM_013449) -63 NM_013449 11176 Hs.314263 NM_013449 HPRD:10417 BAZ2A TIP5|WALp3 bromodomain adjacent to zinc finger domain, 2A protein-coding 13-PTNLD9-TUMOR_peak_11775 chr12 680119 680329 + 6.89690 NA intron (NM_016533, intron 1 of 3) intron (NM_016533, intron 1 of 3) 39355 NM_001294345 4815 Hs.655804 NM_016533 HPRD:09530 NINJ2 - ninjurin 2 protein-coding 13-PTNLD9-TUMOR_peak_35845 chr3 128968280 128968517 + 6.89342 NA promoter-TSS (NM_016128) promoter-TSS (NM_016128) -55 NM_016128 22820 Hs.518250 NM_016128 HPRD:09887 COPG1 COPG coatomer protein complex, subunit gamma 1 protein-coding 13-PTNLD9-TUMOR_peak_19796 chr16 76710358 76710619 + 6.88739 NA Intergenic LTR8A|LTR|ERV1 41593 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LOC101928203 - uncharacterized LOC101928203 ncRNA 13-PTNLD9-TUMOR_peak_13245 chr12 68248328 68248457 + 6.88739 NA Intergenic Intergenic -74623 NR_120456 101927922 Hs.450769 NR_120456 LINC01479 - long intergenic non-protein coding RNA 1479 ncRNA 13-PTNLD9-TUMOR_peak_31995 chr21 19755490 19755636 + 6.88739 NA intron (NM_002772, intron 4 of 24) intron (NM_002772, intron 4 of 24) 20407 NM_002772 5651 Hs.149473 NM_002772 HPRD:05972 TMPRSS15 ENTK|PRSS7 transmembrane protease, serine 15 protein-coding 13-PTNLD9-TUMOR_peak_44027 chr6 19320346 19320452 + 6.88739 NA Intergenic Intergenic -139688 NR_110860 101928519 Hs.551771 NR_110860 LOC101928519 - uncharacterized LOC101928519 ncRNA 13-PTNLD9-TUMOR_peak_48832 chr7 111797132 111797432 + 6.88739 NA intron (NM_014705, intron 1 of 51) intron (NM_014705, intron 1 of 51) 49180 NM_014705 9732 Hs.654652 NM_014705 HPRD:07407 DOCK4 - dedicator of cytokinesis 4 protein-coding 13-PTNLD9-TUMOR_peak_7980 chr10 90844286 90844380 + 6.88739 NA Intergenic Intergenic -21165 NR_039827 100616192 NR_039827 miRBase:MI0017311 MIR4679-2 - microRNA 4679-2 ncRNA 13-PTNLD9-TUMOR_peak_28646 chr2 144502727 144502974 + 6.88739 NA intron (NM_018460, intron 13 of 13) MER117|DNA|hAT-Charlie -191784 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 13-PTNLD9-TUMOR_peak_31595 chr20 52845534 52845633 + 6.88739 NA Intergenic Intergenic 21081 NM_002623 5203 Hs.91161 NM_002623 HPRD:05358 PFDN4 C1|PFD4 prefoldin subunit 4 protein-coding 13-PTNLD9-TUMOR_peak_33006 chr22 26156019 26156114 + 6.88739 NA intron (NM_032608, intron 1 of 43) L1ME3A|LINE|L1 17946 NM_032608 84700 Hs.417959 NM_032608 HPRD:09529 MYO18B - myosin XVIIIB protein-coding 13-PTNLD9-TUMOR_peak_19763 chr16 75045900 75046189 + 6.88739 NA intron (NM_032268, intron 1 of 4) intron (NM_032268, intron 1 of 4) 13129 NM_032268 84937 Hs.427284 NM_032268 HPRD:15893 ZNRF1 NIN283 zinc and ring finger 1, E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_52114 chr8 132593709 132593825 + 6.88739 NA Intergenic Charlie13b|DNA|hAT-Charlie -322589 NM_015137 23167 Hs.204564 NM_015137 HPRD:17179 EFR3A - EFR3 homolog A (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_52959 chr9 27427310 27427527 + 6.88739 NA intron (NM_024761, intron 2 of 3) intron (NM_024761, intron 2 of 3) -96894 NM_020124 56832 Hs.591083 NM_020124 HPRD:17133 IFNK IFNT1|INFE1 interferon, kappa protein-coding 13-PTNLD9-TUMOR_peak_17336 chr15 57210714 57210979 + 6.88739 NA promoter-TSS (NM_207038) promoter-TSS (NM_207038) 13 NM_207038 6938 Hs.511504 NM_003205 HPRD:02725 TCF12 CRS3|HEB|HTF4|HsT17266|bHLHb20 transcription factor 12 protein-coding 13-PTNLD9-TUMOR_peak_22873 chr18 29229037 29229152 + 6.88739 NA intron (NM_004775, intron 3 of 8) intron (NM_004775, intron 3 of 8) 35592 NM_004775 9331 Hs.591063 NM_004775 HPRD:06808 B4GALT6 B4Gal-T6|beta4Gal-T6 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 6 protein-coding 13-PTNLD9-TUMOR_peak_49958 chr8 2363853 2363986 + 6.88739 NA Intergenic Intergenic 116534 NR_125423 101927815 Hs.571467 NR_125423 ENSG00000249694 LOC101927815 - uncharacterized LOC101927815 ncRNA 13-PTNLD9-TUMOR_peak_50974 chr8 55475778 55475923 + 6.88739 NA Intergenic Intergenic -52777 NM_006269 6101 Hs.732820 NM_006269 HPRD:04896 RP1 DCDC4A|ORP1 retinitis pigmentosa 1 (autosomal dominant) protein-coding 13-PTNLD9-TUMOR_peak_32881 chr22 22550182 22550330 + 6.88739 NA Intergenic Intergenic -48944 NM_007128 7441 Hs.247979 NM_007128 HPRD:05505 VPREB1 IGI|IGVPB|VPREB pre-B lymphocyte 1 protein-coding 13-PTNLD9-TUMOR_peak_39278 chr4 124917244 124917420 + 6.88739 NA Intergenic LTR88b|LTR|Gypsy? 221913 NR_027106 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 13-PTNLD9-TUMOR_peak_20604 chr17 18966595 18966704 + 6.88465 NA Intergenic Intergenic -16313 NM_006613 10750 Hs.567416 NM_006613 GRAP - GRB2-related adaptor protein protein-coding 13-PTNLD9-TUMOR_peak_44667 chr6 33265851 33266012 + 6.88283 NA intron (NM_001243738, intron 1 of 16) intron (NM_001243738, intron 1 of 16) 1234 NM_001243738 5863 Hs.509622 NM_004761 HPRD:03810 RGL2 HKE1.5|KE1.5|RAB2L ral guanine nucleotide dissociation stimulator-like 2 protein-coding 13-PTNLD9-TUMOR_peak_45140 chr6 44189102 44189506 + 6.88283 NA intron (NM_004955, intron 1 of 12) intron (NM_004955, intron 1 of 12) -1937 NM_001078175 2030 Hs.25450 NM_004955 HPRD:03724 SLC29A1 ENT1 solute carrier family 29 (equilibrative nucleoside transporter), member 1 protein-coding 13-PTNLD9-TUMOR_peak_27520 chr2 87914508 87914693 + 6.88263 NA Intergenic L1ME3A|LINE|L1 -14674 NR_039634 100616499 NR_039634 miRBase:MI0016775 MIR4435-1 - microRNA 4435-1 ncRNA 13-PTNLD9-TUMOR_peak_41732 chr5 111445136 111445255 + 6.88263 NA Intergenic LTR16A1|LTR|ERVL -51028 NR_015370 114915 Hs.12082 NM_053000 EPB41L4A-AS1 C5orf26|NCRNA00219|TIGA1 EPB41L4A antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_37144 chr3 188186550 188186665 + 6.88263 NA intron (NM_001167671, intron 3 of 10) intron (NM_001167671, intron 3 of 10) 99847 NR_046623 100873917 Hs.674993 NR_046623 LPP-AS1 - LPP antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_4426 chr1 172940486 172940589 + 6.88263 NA Intergenic Intergenic 79566 NM_005092 8995 Hs.248197 NM_005092 TNFSF18 AITRL|GITRL|TL6|hGITRL tumor necrosis factor (ligand) superfamily, member 18 protein-coding 13-PTNLD9-TUMOR_peak_5173 chr1 204776272 204776612 + 6.88263 NA Intergenic Intergenic -21340 NM_015090 23114 Hs.13349 NM_015090 HPRD:12372 NFASC NF|NRCAML neurofascin protein-coding 13-PTNLD9-TUMOR_peak_55731 chrX 39767485 39767663 + 6.88263 NA Intergenic MIR|SINE|MIR 189145 NM_017745 54880 Hs.659681 NM_017745 HPRD:06458 BCOR ANOP2|MAA2|MCOPS2 BCL6 corepressor protein-coding 13-PTNLD9-TUMOR_peak_10326 chr11 66789883 66790076 + 6.88263 NA promoter-TSS (NM_177963) promoter-TSS (NM_177963) -211 NM_001177880 91683 Hs.287636 NM_177963 SYT12 SYT11|sytXII synaptotagmin XII protein-coding 13-PTNLD9-TUMOR_peak_29101 chr2 173694054 173694247 + 6.88263 NA intron (NM_001100397, intron 1 of 27) intron (NM_001100397, intron 1 of 27) 7835 NM_001100397 11069 Hs.470646 NM_007023 HPRD:06929 RAPGEF4 2|CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor (GEF) 4 protein-coding 13-PTNLD9-TUMOR_peak_41226 chr5 71698564 71698679 + 6.88263 NA Intergenic Intergenic 82427 NM_001284404 79810 Hs.126906 NM_024754 HPRD:15193 PTCD2 - pentatricopeptide repeat domain 2 protein-coding 13-PTNLD9-TUMOR_peak_32965 chr22 24917753 24917948 + 6.88263 NA intron (NM_016327, intron 7 of 9) intron (NM_016327, intron 7 of 9) 26599 NM_016327 51733 Hs.731656 NM_016327 HPRD:09451 UPB1 BUP1 ureidopropionase, beta protein-coding 13-PTNLD9-TUMOR_peak_21604 chr17 56100373 56100611 + 6.88263 NA Intergenic LTR67B|LTR|ERVL -15785 NM_006924 6426 Hs.68714 NM_006924 SRSF1 ASF|SF2|SF2p33|SFRS1|SRp30a serine/arginine-rich splicing factor 1 protein-coding 13-PTNLD9-TUMOR_peak_47205 chr7 33004481 33004642 + 6.88263 NA intron (NM_001284341, intron 2 of 10) intron (NM_001284341, intron 2 of 10) 7545 NM_001284341 11328 Hs.103934 NM_007270 HPRD:06510 FKBP9 FKBP60|FKBP63|PPIase FK506 binding protein 9, 63 kDa protein-coding 13-PTNLD9-TUMOR_peak_12648 chr12 46794585 46794734 + 6.88263 NA intron (NR_125381, intron 2 of 2) L2a|LINE|L2 16769 NR_125381 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 13-PTNLD9-TUMOR_peak_50093 chr8 11759908 11760100 + 6.88263 NA Intergenic CpG -34358 NM_147782 1508 Hs.520898 NM_001908 HPRD:00287 CTSB APPS|CPSB cathepsin B protein-coding 13-PTNLD9-TUMOR_peak_56320 chrX 106954326 106954494 + 6.88263 NA Intergenic Intergenic 5301 NM_001015881 1831 Hs.522074 NM_004089 HPRD:04266 TSC22D3 DIP|DSIPI|GILZ|TSC-22R|hDIP TSC22 domain family, member 3 protein-coding 13-PTNLD9-TUMOR_peak_38218 chr4 40297481 40297585 + 6.88263 NA Intergenic (TCTCTG)n|Simple_repeat|Simple_repeat -11669 NR_121641 101060498 Hs.351492 NR_121640 ENSG00000249241 LOC101060498 - uncharacterized LOC101060498 ncRNA 13-PTNLD9-TUMOR_peak_31393 chr20 48585466 48585575 + 6.88263 NA Intergenic Intergenic -13993 NM_005985 6615 Hs.48029 NM_005985 HPRD:05025 SNAI1 SLUGH2|SNA|SNAH|SNAIL|SNAIL1|dJ710H13.1 snail family zinc finger 1 protein-coding 13-PTNLD9-TUMOR_peak_23653 chr19 2163766 2163940 + 6.88050 NA promoter-TSS (NM_032482) promoter-TSS (NM_032482) -295 NM_032482 84444 Hs.713641 NM_032482 HPRD:10455 DOT1L DOT1|KMT4 DOT1-like histone H3K79 methyltransferase protein-coding 13-PTNLD9-TUMOR_peak_33775 chr3 11624213 11624326 + 6.88050 NA promoter-TSS (NM_001128220) promoter-TSS (NM_001128220) -404 NM_001128220 9686 Hs.740389 NM_014667 HPRD:11672 VGLL4 VGL-4 vestigial-like family member 4 protein-coding 13-PTNLD9-TUMOR_peak_9869 chr11 57045776 57045999 + 6.88050 NA Intergenic Intergenic -40960 NM_005161 187 Hs.438311 NM_005161 HPRD:02503 APLNR AGTRL1|APJ|APJR|HG11 apelin receptor protein-coding 13-PTNLD9-TUMOR_peak_43302 chr5 179189654 179189758 + 6.88050 NA intron (NM_014757, intron 1 of 4) intron (NM_014757, intron 1 of 4) 29855 NM_014757 9794 Hs.631951 NM_014757 HPRD:05665 MAML1 Mam-1|Mam1 mastermind-like 1 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_51905 chr8 126455707 126455974 + 6.88050 NA Intergenic Intergenic 11389 NM_001282985 10221 Hs.444947 NM_025195 HPRD:09863 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 13-PTNLD9-TUMOR_peak_28122 chr2 113827438 113827653 + 6.88050 NA intron (NM_173161, intron 1 of 4) intron (NM_173161, intron 1 of 4) 1998 NM_173161 84639 Hs.306974 NM_032556 HPRD:17144 IL1F10 FIL1-theta|IL-1HY2|IL-38|IL1-theta|IL1HY2 interleukin 1 family, member 10 (theta) protein-coding 13-PTNLD9-TUMOR_peak_29624 chr2 205529463 205529853 + 6.88050 NA intron (NM_205863, intron 1 of 21) intron (NM_205863, intron 1 of 21) 119142 NM_057177 117583 Hs.657382 NM_057177 HPRD:09795 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3LC|PAR3beta|Par3Lb par-3 family cell polarity regulator beta protein-coding 13-PTNLD9-TUMOR_peak_21502 chr17 49222957 49223059 + 6.88050 NA Intergenic AluY|SINE|Alu -7889 NM_001018136 654364 Hs.463456 NM_001018136 ENSG00000011052 NME1-NME2 NM23-LV|NMELV NME1-NME2 readthrough protein-coding 13-PTNLD9-TUMOR_peak_53995 chr9 94660946 94661217 + 6.88050 NA intron (NM_004560, intron 1 of 8) intron (NM_004560, intron 1 of 8) 51363 NM_004560 4920 Hs.98255 NM_004560 HPRD:03822 ROR2 BDB|BDB1|NTRKR2 receptor tyrosine kinase-like orphan receptor 2 protein-coding 13-PTNLD9-TUMOR_peak_48419 chr7 97987110 97987293 + 6.88050 NA intron (NM_018842, intron 2 of 13) intron (NM_018842, intron 2 of 13) 43226 NM_018842 55971 Hs.656063 NM_018842 HPRD:11270 BAIAP2L1 IRTKS BAI1-associated protein 2-like 1 protein-coding 13-PTNLD9-TUMOR_peak_31132 chr20 43017274 43017384 + 6.88050 NA intron (NR_109949, intron 2 of 3) intron (NR_109949, intron 2 of 3) 7017 NR_109949 101927219 Hs.655919 NR_109949 ENSG00000229005 HNF4A-AS1 uc002xlx HNF4A antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_33776 chr3 11625199 11625435 + 6.88050 NA intron (NM_001284390, intron 4 of 6) intron (NM_001284390, intron 4 of 6) -1452 NM_001128220 9686 Hs.740389 NM_014667 HPRD:11672 VGLL4 VGL-4 vestigial-like family member 4 protein-coding 13-PTNLD9-TUMOR_peak_45776 chr6 96206623 96206811 + 6.88050 NA Intergenic L1PA2|LINE|L1 181344 NM_024641 79694 Hs.734632 NM_024641 HPRD:14357 MANEA ENDO|hEndo mannosidase, endo-alpha protein-coding 13-PTNLD9-TUMOR_peak_50012 chr8 7564435 7564570 + 6.87607 NA Intergenic HERVE-int|LTR|ERV1 -62604 NR_046351 441328 Hs.694406 NM_001164447 FAM90A10P FAM90A10 putative protein FAM90A10 pseudo 13-PTNLD9-TUMOR_peak_47264 chr7 38409585 38409689 + 6.87607 NA intron (NR_040085, intron 3 of 3) L1MD2|LINE|L1 28459 NR_040085 100506776 Hs.173034 NR_040085 TRG-AS1 - T cell receptor gamma locus antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_34904 chr3 69135644 69135834 + 6.87607 NA intron (NM_006407, intron 1 of 2) intron (NM_006407, intron 1 of 2) 1649 NM_006407 10550 Hs.518060 NM_006407 HPRD:09303 ARL6IP5 DERP11|GTRAP3-18|JWA|PRAF3|addicsin|hp22|jmx ADP-ribosylation factor-like 6 interacting protein 5 protein-coding 13-PTNLD9-TUMOR_peak_16845 chr15 27366185 27366312 + 6.87607 NA intron (NM_033223, intron 3 of 9) intron (NM_033223, intron 3 of 9) 40218 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 LOC101928869 - uncharacterized LOC101928869 ncRNA 13-PTNLD9-TUMOR_peak_28296 chr2 121677766 121677948 + 6.87607 NA intron (NM_005270, intron 1 of 12) intron (NM_005270, intron 1 of 12) 122990 NM_005270 2736 Hs.111867 NM_005270 HPRD:01312 GLI2 HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 13-PTNLD9-TUMOR_peak_27397 chr2 85152989 85153268 + 6.87607 NA Intergenic MER91C|DNA|hAT-Tip100 20365 NM_021103 9168 Hs.446574 NM_021103 HPRD:01779 TMSB10 MIG12|TB10 thymosin beta 10 protein-coding 13-PTNLD9-TUMOR_peak_7153 chr10 43817897 43818014 + 6.87607 NA Intergenic Intergenic -49137 NM_001184963 53828 Hs.130497 NM_173160 HPRD:07019 FXYD4 CHIF FXYD domain containing ion transport regulator 4 protein-coding 13-PTNLD9-TUMOR_peak_52929 chr9 22683796 22683934 + 6.87607 NA intron (NR_038977, intron 3 of 5) intron (NR_038977, intron 3 of 5) 37666 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 13-PTNLD9-TUMOR_peak_36428 chr3 152369614 152369708 + 6.87607 NA Intergenic Intergenic -183075 NM_002563 5028 Hs.654526 NM_002563 HPRD:03103 P2RY1 P2Y1 purinergic receptor P2Y, G-protein coupled, 1 protein-coding 13-PTNLD9-TUMOR_peak_12890 chr12 53626211 53626427 + 6.87607 NA promoter-TSS (NM_000966) promoter-TSS (NM_000966) -279 NM_001243730 5916 Hs.1497 NM_000966 HPRD:01573 RARG NR1B3|RARC retinoic acid receptor, gamma protein-coding 13-PTNLD9-TUMOR_peak_28467 chr2 132249926 132250115 + 6.87466 NA promoter-TSS (NM_001085365) promoter-TSS (NM_001085365) 44 NM_001085365 653784 Hs.655067 NM_001085365 ENSG00000173272 MZT2A FAM128A|MOZART2A mitotic spindle organizing protein 2A protein-coding 13-PTNLD9-TUMOR_peak_33710 chr3 9974388 9974750 + 6.87466 NA promoter-TSS (NM_015513) promoter-TSS (NM_015513) -955 NM_015513 78987 Hs.9383 NM_015513 HPRD:06206 CRELD1 AVSD2|CIRRIN cysteine-rich with EGF-like domains 1 protein-coding 13-PTNLD9-TUMOR_peak_43380 chr6 328185 328336 + 6.87164 NA intron (NR_104473, intron 3 of 5) intron (NR_104473, intron 3 of 5) 36203 NM_001286555 56940 Hs.29106 NM_020185 HPRD:13255 DUSP22 JKAP|JSP-1|JSP1|LMW-DSP2|LMWDSP2|MKP-x|MKPX|VHX dual specificity phosphatase 22 protein-coding 13-PTNLD9-TUMOR_peak_44204 chr6 26119319 26119453 + 6.87164 NA Intergenic Intergenic 4746 NM_003526 8347 Hs.658713 NM_003526 HIST1H2BC H2B.1|H2B/l|H2BFL|dJ221C16.3 histone cluster 1, H2bc protein-coding 13-PTNLD9-TUMOR_peak_25142 chr19 45959581 45959736 + 6.86671 NA Intergenic Intergenic -11595 NM_001114171 2354 Hs.590958 NM_006732 HPRD:01270 FOSB AP-1|G0S3|GOS3|GOSB FBJ murine osteosarcoma viral oncogene homolog B protein-coding 13-PTNLD9-TUMOR_peak_24191 chr19 14616644 14616746 + 6.86516 NA Intergenic Intergenic -9734 NM_202494 10755 Hs.655012 NM_005716 HPRD:05462 GIPC1 C19orf3|GIPC|GLUT1CBP|Hs.6454|IIP-1|NIP|RGS19IP1|SEMCAP|SYNECTIIN|SYNECTIN|TIP-2 GIPC PDZ domain containing family, member 1 protein-coding 13-PTNLD9-TUMOR_peak_23613 chr19 1252581 1252781 + 6.86340 NA intron (NM_177401, intron 4 of 7) intron (NM_177401, intron 4 of 7) 4129 NM_177401 90007 Hs.465529 NM_177401 HPRD:16230 MIDN - midnolin protein-coding 13-PTNLD9-TUMOR_peak_24170 chr19 14229524 14229658 + 6.86200 NA TTS (NM_018154) TTS (NM_018154) -1032 NM_002730 5566 Hs.631630 NM_002730 HPRD:03382 PRKACA PKACA protein kinase, cAMP-dependent, catalytic, alpha protein-coding 13-PTNLD9-TUMOR_peak_28515 chr2 133318706 133318834 + 6.85085 NA intron (NM_001508, intron 1 of 1) AluSx4|SINE|Alu 109711 NM_144586 116372 Hs.432395 NM_144586 HPRD:14333 LYPD1 LYPDC1|PHTS LY6/PLAUR domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_33227 chr22 37937922 37938165 + 6.85067 NA Intergenic Intergenic -18428 NM_152243 11135 Hs.225356 NM_152243 HPRD:07303 CDC42EP1 BORG5|CEP1|MSE55 CDC42 effector protein (Rho GTPase binding) 1 protein-coding 13-PTNLD9-TUMOR_peak_20228 chr17 1552831 1553090 + 6.85067 NA TTS (NM_006445) TTS (NM_006445) 432 NM_031430 83547 Hs.534497 NM_031430 HPRD:09706 RILP - Rab interacting lysosomal protein protein-coding 13-PTNLD9-TUMOR_peak_23607 chr19 1180558 1180798 + 6.85067 NA Intergenic Intergenic -6396 NM_014963 22904 Hs.408708 NM_014963 HPRD:17203 SBNO2 KIAA0963|SNO|STNO strawberry notch homolog 2 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_48779 chr7 107205419 107205664 + 6.85067 NA promoter-TSS (NM_001161520) promoter-TSS (NM_001161520) -582 NM_001161520 10466 Hs.239631 NM_006348 HPRD:08436 COG5 CDG2I|GOLTC1|GTC90 component of oligomeric golgi complex 5 protein-coding 13-PTNLD9-TUMOR_peak_18203 chr16 1772306 1772450 + 6.84667 NA intron (NM_015133, intron 1 of 31) intron (NM_015133, intron 1 of 31) -12608 NR_036138 100423012 NR_036138 MIR3177 - microRNA 3177 ncRNA 13-PTNLD9-TUMOR_peak_21180 chr17 42898031 42898200 + 6.84667 NA intron (NM_001080383, intron 1 of 2) intron (NM_001080383, intron 1 of 2) 9492 NM_005497 10052 Hs.712052 NM_005497 HPRD:08819 GJC1 CX45|GJA7 gap junction protein, gamma 1, 45kDa protein-coding 13-PTNLD9-TUMOR_peak_23636 chr19 1812444 1812883 + 6.84667 NA promoter-TSS (NM_001178002) promoter-TSS (NM_001178002) -388 NM_138813 148229 Hs.306212 NM_138813 HPRD:05793 ATP8B3 ATPIK ATPase, aminophospholipid transporter, class I, type 8B, member 3 protein-coding 13-PTNLD9-TUMOR_peak_27523 chr2 87969478 87969689 + 6.84667 NA Intergenic Intergenic 40304 NR_039636 100616341 NR_039636 miRBase:MI0016777 MIR4435-2 - microRNA 4435-2 ncRNA 13-PTNLD9-TUMOR_peak_18038 chr15 97839017 97839235 + 6.84667 NA Intergenic L1PA3|LINE|L1 225915 NR_120324 101927286 Hs.611279 NR_120324 LOC101927286 - uncharacterized LOC101927286 ncRNA 13-PTNLD9-TUMOR_peak_1504 chr1 44338107 44338237 + 6.84667 NA intron (NR_073021, intron 6 of 9) intron (NR_073021, intron 6 of 9) 33878 NR_106727 102464830 NR_106727 MIR6079 hsa-mir-6079 microRNA 6079 ncRNA 13-PTNLD9-TUMOR_peak_52175 chr8 134461766 134461992 + 6.84667 NA Intergenic Intergenic 122304 NM_173344 6482 Hs.374257 NM_003033 HPRD:06219 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_23502 chr18 74919557 74919652 + 6.84667 NA Intergenic Intergenic -42404 NM_001480 2587 Hs.272191 NM_001480 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_4860 chr1 196471233 196471502 + 6.84667 NA intron (NM_001287819, intron 1 of 26) intron (NM_001287819, intron 1 of 26) 80244 NR_039888 100616363 NR_039888 MIR4735 - microRNA 4735 ncRNA 13-PTNLD9-TUMOR_peak_33206 chr22 36877951 36878143 + 6.84667 NA promoter-TSS (NM_012473) promoter-TSS (NM_012473) -360 NM_012473 25828 Hs.211929 NM_012473 HPRD:07161 TXN2 MT-TRX|MTRX|TRX2 thioredoxin 2 protein-coding 13-PTNLD9-TUMOR_peak_28720 chr2 151382594 151382728 + 6.84667 NA Intergenic MER4B|LTR|ERV1 -38452 NM_001254738 390 Hs.6838 NM_005168 HPRD:04233 RND3 ARHE|Rho8|RhoE|memB Rho family GTPase 3 protein-coding 13-PTNLD9-TUMOR_peak_4187 chr1 162351376 162351529 + 6.84667 NA promoter-TSS (NM_001085375) promoter-TSS (NM_001085375) -68 NM_001085375 400793 Hs.447011 NM_001085375 ENSG00000239887 C1orf226 - chromosome 1 open reading frame 226 protein-coding 13-PTNLD9-TUMOR_peak_34681 chr3 53194674 53194888 + 6.84667 NA promoter-TSS (NM_212539) promoter-TSS (NM_212539) -442 NM_212539 5580 Hs.155342 NM_006254 HPRD:01501 PRKCD CVID9|MAY1|PKCD|nPKC-delta protein kinase C, delta protein-coding 13-PTNLD9-TUMOR_peak_28597 chr2 139102799 139102996 + 6.84667 NA Intergenic Intergenic -156453 NM_001001664 339745 Hs.333297 NM_001001664 HPRD:11261 SPOPL BTBD33 speckle-type POZ protein-like protein-coding 13-PTNLD9-TUMOR_peak_816 chr1 27693454 27693576 + 6.84667 NA promoter-TSS (NM_004672) promoter-TSS (NM_004672) -158 NM_001297609 9064 Hs.194694 NM_004672 HPRD:05126 MAP3K6 ASK2|MAPKKK6|MEKK6 mitogen-activated protein kinase kinase kinase 6 protein-coding 13-PTNLD9-TUMOR_peak_34051 chr3 23109612 23109758 + 6.84667 NA Intergenic LTR39|LTR|ERV1 -135099 NM_152653 7325 Hs.475688 NM_152653 UBE2E2 UBCH8 ubiquitin-conjugating enzyme E2E 2 protein-coding 13-PTNLD9-TUMOR_peak_17541 chr15 69760928 69761203 + 6.84667 NA Intergenic Intergenic 15906 NM_001003 6176 Hs.356502 NM_001003 HPRD:01611 RPLP1 LP1|P1|RPP1 ribosomal protein, large, P1 protein-coding 13-PTNLD9-TUMOR_peak_34453 chr3 46989553 46990031 + 6.84667 NA intron (NM_001277074, intron 1 of 6) intron (NM_001277074, intron 1 of 6) 28199 NR_102269 151903 Hs.631918 NM_144716 HPRD:13007 CCDC12 - coiled-coil domain containing 12 protein-coding 13-PTNLD9-TUMOR_peak_8680 chr10 135090276 135090444 + 6.84667 NA promoter-TSS (NM_001164489) promoter-TSS (NM_001164489) 47 NM_001164490 101 Hs.501574 NM_001109 HPRD:03777 ADAM8 CD156|CD156a|MS2 ADAM metallopeptidase domain 8 protein-coding 13-PTNLD9-TUMOR_peak_33325 chr22 41346922 41347142 + 6.84667 NA promoter-TSS (NM_014248) promoter-TSS (NM_014248) -319 NM_014248 9978 Hs.474949 NM_014248 RBX1 BA554C12.1|RNF75|ROC1 ring-box 1, E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_35375 chr3 112139696 112139902 + 6.84584 NA Intergenic HERVH-int|LTR|ERV1 78609 NM_001085357 151888 Hs.445162 NM_181780 HPRD:06392 BTLA BTLA1|CD272 B and T lymphocyte associated protein-coding 13-PTNLD9-TUMOR_peak_2784 chr1 110282724 110283055 + 6.84584 NA exon (NM_000849, exon 2 of 9) exon (NM_000849, exon 2 of 9) 771 NR_024537 2947 Hs.2006 NM_000849 HPRD:00712 GSTM3 GST5|GSTB|GSTM3-3|GTM3 glutathione S-transferase mu 3 (brain) protein-coding 13-PTNLD9-TUMOR_peak_35313 chr3 111296768 111296953 + 6.84584 NA intron (NM_198196, intron 4 of 14) MER5B|DNA|hAT-Charlie 17322 NM_024508 79413 Hs.136912 NM_024508 HPRD:15686 ZBED2 - zinc finger, BED-type containing 2 protein-coding 13-PTNLD9-TUMOR_peak_40150 chr5 628651 628800 + 6.84584 NA intron (NM_018140, intron 4 of 11) intron (NM_018140, intron 4 of 11) 16320 NM_018140 55722 Hs.591741 NM_018140 HPRD:07685 CEP72 - centrosomal protein 72kDa protein-coding 13-PTNLD9-TUMOR_peak_54028 chr9 95985699 95985939 + 6.84584 NA intron (NM_006648, intron 1 of 28) intron (NM_006648, intron 1 of 28) 38607 NM_001282394 65268 Hs.654856 NM_006648 HPRD:06951 WNK2 NY-CO-43|P/OKcl.13|PRKWNK2|SDCCAG43 WNK lysine deficient protein kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_31129 chr20 42939507 42939606 + 6.84584 NA intron (NM_001080472, intron 1 of 1) CpG 333 NM_001080472 128486 Hs.632269 NM_001080472 FITM2 C20orf142|Fit2|dJ881L22.2 fat storage-inducing transmembrane protein 2 protein-coding 13-PTNLD9-TUMOR_peak_16715 chr14 107252985 107253122 + 6.84584 NA Intergenic HERV3-int|LTR|ERV1 314608 NR_027457 338005 Hs.322826 NR_027457 ENSG00000187156 LINC00221 C14orf98|NCRNA00221 long intergenic non-protein coding RNA 221 ncRNA 13-PTNLD9-TUMOR_peak_49566 chr7 148794385 148794490 + 6.84584 NA Intergenic Intergenic -6568 NM_152411 136051 Hs.729572 NM_152411 HPRD:13232 ZNF786 - zinc finger protein 786 protein-coding 13-PTNLD9-TUMOR_peak_17459 chr15 65588388 65588558 + 6.84584 NA Intergenic U5|snRNA|snRNA -9455 NM_017851 54956 Hs.30634 NM_017851 HPRD:07919 PARP16 ARTD15|C15orf30|pART15 poly (ADP-ribose) polymerase family, member 16 protein-coding 13-PTNLD9-TUMOR_peak_42356 chr5 140710003 140710101 + 6.84546 NA promoter-TSS (NM_018912) promoter-TSS (NM_018912) -200 NM_018912 56114 Hs.368160 NM_018912 HPRD:07551 PCDHGA1 PCDH-GAMMA-A1 protocadherin gamma subfamily A, 1 protein-coding 13-PTNLD9-TUMOR_peak_10591 chr11 73281567 73281691 + 6.84546 NA intron (NM_001286051, intron 1 of 5) AluJb|SINE|Alu 27605 NM_001286051 23201 Hs.475334 NM_015159 ENSG00000054965 FAM168A KIAA0280|TCRP1 family with sequence similarity 168, member A protein-coding 13-PTNLD9-TUMOR_peak_705 chr1 24528562 24528658 + 6.84546 NA intron (NR_027087, intron 1 of 2) intron (NR_027087, intron 1 of 2) 1880 NR_027087 284632 Hs.638906 NR_027087 ENSG00000230023 LOC284632 - uncharacterized LOC284632 ncRNA 13-PTNLD9-TUMOR_peak_44718 chr6 33927847 33928090 + 6.84546 NA Intergenic Intergenic 39860 NR_031681 100302123 NR_031681 miRBase:MI0006415 MIR1275 MIRN1275|hsa-mir-1275 microRNA 1275 ncRNA 13-PTNLD9-TUMOR_peak_41446 chr5 82150559 82150678 + 6.84546 NA non-coding (NR_105016, exon 2 of 4) non-coding (NR_105016, exon 2 of 4) 5037 NR_105016 102546175 NR_105016 LINC01338 - long intergenic non-protein coding RNA 1338 ncRNA 13-PTNLD9-TUMOR_peak_5516 chr1 223602861 223602972 + 6.84546 NA Intergenic Intergenic 36201 NM_152610 164127 Hs.192090 NM_152610 HPRD:08761 CCDC185 C1orf65 coiled-coil domain containing 185 protein-coding 13-PTNLD9-TUMOR_peak_18752 chr16 22218403 22218518 + 6.84546 NA intron (NM_013302, intron 1 of 17) intron (NM_013302, intron 1 of 17) 868 NM_013302 29904 Hs.498892 NM_013302 EEF2K HSU93850|eEF-2K eukaryotic elongation factor-2 kinase protein-coding 13-PTNLD9-TUMOR_peak_54039 chr9 96897712 96897816 + 6.84546 NA Intergenic MLT1C|LTR|ERVL-MaLR -40475 NR_029476 406881 NR_029476 miRBase:MI0000060 MIRLET7A1 LET7A1|MIRNLET7A1|let-7a-1 microRNA let-7a-1 ncRNA 13-PTNLD9-TUMOR_peak_45085 chr6 43449479 43449580 + 6.84546 NA intron (NM_001146018, intron 3 of 10) intron (NM_001146018, intron 3 of 10) 4268 NR_027394 93643 Hs.520145 NM_080604 HPRD:10269 TJAP1 PILT|TJP4 tight junction associated protein 1 (peripheral) protein-coding 13-PTNLD9-TUMOR_peak_27409 chr2 85475994 85476186 + 6.84546 NA intron (NM_031283, intron 3 of 11) L2a|LINE|L2 79329 NM_001206840 10618 Hs.593382 NM_006464 HPRD:04343 TGOLN2 TGN38|TGN46|TGN48|TGN51|TTGN2 trans-golgi network protein 2 protein-coding 13-PTNLD9-TUMOR_peak_42165 chr5 134887639 134887782 + 6.84546 NA Intergenic Intergenic -16071 NM_006161 4762 Hs.248149 NM_006161 HPRD:03430 NEUROG1 AKA|Math4C|NEUROD3|bHLHa6|ngn1 neurogenin 1 protein-coding 13-PTNLD9-TUMOR_peak_54852 chr9 131182611 131182705 + 6.84546 NA promoter-TSS (NM_016174) promoter-TSS (NM_016174) -101 NM_016174 51148 Hs.495230 NM_016174 HPRD:16705 CERCAM CEECAM1|GLT25D3 cerebral endothelial cell adhesion molecule protein-coding 13-PTNLD9-TUMOR_peak_34499 chr3 48501738 48501839 + 6.84546 NA exon (NM_130384, exon 8 of 13) exon (NM_130384, exon 8 of 13) -5131 NM_033629 11277 Hs.707026 NM_007248 HPRD:09423 TREX1 AGS1|CRV|DRN3|HERNS three prime repair exonuclease 1 protein-coding 13-PTNLD9-TUMOR_peak_6838 chr10 30842926 30843031 + 6.84546 NA Intergenic Intergenic 75669 NM_183058 119180 Hs.522610 NM_183058 HPRD:14337 LYZL2 - lysozyme-like 2 protein-coding 13-PTNLD9-TUMOR_peak_2945 chr1 115345531 115345744 + 6.84546 NA Intergenic MLT1H|LTR|ERVL-MaLR -22329 NM_001102396 80143 Hs.709277 NM_025073 HPRD:07958 SIKE1 SIKE suppressor of IKBKE 1 protein-coding 13-PTNLD9-TUMOR_peak_34279 chr3 38537704 38537939 + 6.84546 NA promoter-TSS (NM_001145464) promoter-TSS (NM_001145464) 58 NM_001145464 9941 Hs.517897 NM_005107 HPRD:06813 EXOG ENDOGL1|ENDOGL2|ENGL|ENGL-a|ENGL-b|ENGLA|ENGLB endo/exonuclease (5'-3'), endonuclease G-like protein-coding 13-PTNLD9-TUMOR_peak_54591 chr9 119334573 119334705 + 6.84546 NA intron (NM_198187, intron 4 of 8) intron (NM_198187, intron 4 of 8) 68077 NR_033973 100128505 Hs.675821 NR_033973 ENSG00000229105 ASTN2-AS1 - ASTN2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_44951 chr6 40874638 40874768 + 6.84546 NA intron (NR_110873, intron 1 of 5) MIR3|SINE|MIR 116316 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 13-PTNLD9-TUMOR_peak_32401 chr21 43135894 43136144 + 6.84546 NA promoter-TSS (NR_027272) promoter-TSS (NR_027272) -84 NR_027272 150135 Hs.350679 NM_152506 HPRD:10741 LINC00479 C21orf129 long intergenic non-protein coding RNA 479 ncRNA 13-PTNLD9-TUMOR_peak_16450 chr14 92040456 92040985 + 6.84546 NA Intergenic CpG -63896 NM_001284281 55671 Hs.533887 NM_017936 HPRD:11176 SMEK1 FLFL1|KIAA2010|PP4R3A|smk-1|smk1 SMEK homolog 1, suppressor of mek1 (Dictyostelium) protein-coding 13-PTNLD9-TUMOR_peak_21893 chr17 70123275 70123373 + 6.84535 NA TTS (NM_000346) TTS (NM_000346) 6163 NM_000346 6662 Hs.647409 NM_000346 HPRD:06427 SOX9 CMD1|CMPD1|SRA1 SRY (sex determining region Y)-box 9 protein-coding 13-PTNLD9-TUMOR_peak_45923 chr6 112629038 112629136 + 6.84535 NA Intergenic LTR78B|LTR|ERV1 -39445 NM_001013734 442247 Hs.448264 NM_001013734 HPRD:18472 RFPL4B RNF211 ret finger protein-like 4B protein-coding 13-PTNLD9-TUMOR_peak_11575 chr11 127391464 127391607 + 6.84535 NA Intergenic Intergenic 250570 NR_120580 101929497 Hs.737442 NR_120580 ENSG00000273409 LOC101929497 - uncharacterized LOC101929497 ncRNA 13-PTNLD9-TUMOR_peak_55842 chrX 49028852 49029053 + 6.84535 NA intron (NM_002668, intron 1 of 4) CpG 768 NM_002668 5355 Hs.77422 NM_002668 HPRD:02121 PLP2 A4|A4LSB proteolipid protein 2 (colonic epithelium-enriched) protein-coding 13-PTNLD9-TUMOR_peak_13364 chr12 75571910 75572020 + 6.84535 NA intron (NM_139136, intron 2 of 5) intron (NM_139136, intron 2 of 5) 31563 NM_001260498 3747 Hs.27214 NM_139136 HPRD:08883 KCNC2 KV3.2 potassium voltage-gated channel, Shaw-related subfamily, member 2 protein-coding 13-PTNLD9-TUMOR_peak_10971 chr11 95438839 95438976 + 6.84535 NA Intergenic Intergenic 84047 NM_144664 143684 Hs.288304 NM_144664 HPRD:11333 FAM76B - family with sequence similarity 76, member B protein-coding 13-PTNLD9-TUMOR_peak_46976 chr7 19789419 19789529 + 6.84535 NA intron (NM_152774, intron 1 of 3) intron (NM_152774, intron 1 of 3) 22930 NM_152774 256130 Hs.487670 NM_152774 HPRD:14617 TMEM196 - transmembrane protein 196 protein-coding 13-PTNLD9-TUMOR_peak_54417 chr9 112861745 112861933 + 6.84535 NA intron (NM_001004065, intron 1 of 3) intron (NM_001004065, intron 1 of 3) -25942 NM_001136562 11217 Hs.591908 NM_001004065 ENSG00000241978 AKAP2 AKAP-2|AKAPKL|PRKA2 A kinase (PRKA) anchor protein 2 protein-coding 13-PTNLD9-TUMOR_peak_54934 chr9 133746026 133746290 + 6.84535 NA intron (NM_005157, intron 4 of 10) intron (NM_005157, intron 4 of 10) 23067 NM_198180 347148 Hs.660704 NM_198180 HPRD:17813 QRFP 26RFa|P518 pyroglutamylated RFamide peptide protein-coding 13-PTNLD9-TUMOR_peak_10829 chr11 86188838 86189016 + 6.84535 NA intron (NM_001014811, intron 6 of 13) intron (NM_001014811, intron 6 of 13) 103149 NM_021827 60494 Hs.144913 NM_021827 HPRD:08032 CCDC81 - coiled-coil domain containing 81 protein-coding 13-PTNLD9-TUMOR_peak_24708 chr19 34398045 34398149 + 6.84535 NA Intergenic Intergenic 110346 NM_024076 79047 Hs.221873 NM_024076 HPRD:13765 KCTD15 - potassium channel tetramerization domain containing 15 protein-coding 13-PTNLD9-TUMOR_peak_31970 chr21 17907473 17907636 + 6.84535 NA intron (NR_111004, intron 5 of 5) intron (NR_111004, intron 5 of 5) -3855 NR_029514 407055 NR_029514 miRBase:MI0000101 MIR99A MIRN99A microRNA 99a ncRNA 13-PTNLD9-TUMOR_peak_3107 chr1 120760894 120761010 + 6.84535 NA Intergenic Intergenic -78053 NM_001100910 653820 Hs.339665 NM_001100910 ENSG00000188610 FAM72B p17 family with sequence similarity 72, member B protein-coding 13-PTNLD9-TUMOR_peak_21678 chr17 58450510 58450686 + 6.84535 NA intron (NM_032582, intron 1 of 33) Tigger3b|DNA|TcMar-Tigger 18988 NM_032582 84669 Hs.132868 NM_032582 USP32 NY-REN-60|USP10 ubiquitin specific peptidase 32 protein-coding 13-PTNLD9-TUMOR_peak_24014 chr19 11642967 11643072 + 6.84039 NA Intergenic L1MC4a|LINE|L1 -3032 NM_001142465 51295 Hs.515146 NM_016581 HPRD:12225 ECSIT SITPEC ECSIT signalling integrator protein-coding 13-PTNLD9-TUMOR_peak_5026 chr1 202205533 202205722 + 6.84036 NA intron (NM_001017404, intron 4 of 15) intron (NM_001017404, intron 4 of 15) 22344 NM_001017404 59352 Hs.497402 NM_021636 HPRD:05974 LGR6 GPCR|VTS20631 leucine-rich repeat containing G protein-coupled receptor 6 protein-coding 13-PTNLD9-TUMOR_peak_50895 chr8 49426797 49426963 + 6.84036 NA Intergenic Intergenic -37247 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 13-PTNLD9-TUMOR_peak_18403 chr16 5007755 5007868 + 6.84036 NA promoter-TSS (NM_014692) promoter-TSS (NM_014692) -507 NM_014692 9717 Hs.512856 NM_014692 ENSG00000103184 SEC14L5 PRELID4B SEC14-like 5 (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_976 chr1 32409953 32410208 + 6.84036 NA Intergenic Intergenic -6092 NM_080391 8073 Hs.470477 NM_003479 HPRD:03348 PTP4A2 HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b protein tyrosine phosphatase type IVA, member 2 protein-coding 13-PTNLD9-TUMOR_peak_18927 chr16 29398253 29398373 + 6.83047 NA Intergenic Intergenic -62353 NR_002454 606724 Hs.744975 NR_002454 LOC606724 - coronin, actin binding protein, 1A pseudogene pseudo 13-PTNLD9-TUMOR_peak_35339 chr3 111577943 111578142 + 6.82889 NA promoter-TSS (NM_001134439) promoter-TSS (NM_001134439) 15 NM_145753 90102 Hs.603252 NM_145753 HPRD:06611 PHLDB2 LL5b|LL5beta pleckstrin homology-like domain, family B, member 2 protein-coding 13-PTNLD9-TUMOR_peak_34763 chr3 57990849 57990962 + 6.82889 NA Intergenic Tigger3|DNA|TcMar-Tigger -3222 NM_001457 2317 Hs.476448 NM_001457 HPRD:04543 FLNB ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP filamin B, beta protein-coding 13-PTNLD9-TUMOR_peak_40329 chr5 10760795 10760998 + 6.82889 NA intron (NM_001291963, intron 1 of 2) CpG 491 NM_004394 1611 Hs.75189 NM_004394 HPRD:02977 DAP - death-associated protein protein-coding 13-PTNLD9-TUMOR_peak_27336 chr2 75833056 75833155 + 6.82672 NA Intergenic Intergenic -36257 NM_032181 84141 Hs.302346 NM_032181 HPRD:07827 EVA1A FAM176A|TMEM166 eva-1 homolog A (C. elegans) protein-coding 13-PTNLD9-TUMOR_peak_16914 chr15 30685661 30685781 + 6.81898 NA 5' UTR (NM_148911, exon 1 of 9) 5' UTR (NM_148911, exon 1 of 9) 143 NM_148911 89832 Hs.510853 NM_139320 HPRD:18704 CHRFAM7A CHRNA7|CHRNA7-DR1|D-10 CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion protein-coding 13-PTNLD9-TUMOR_peak_37493 chr3 197520322 197520416 + 6.81633 NA intron (NM_032773, intron 1 of 18) intron (NM_032773, intron 1 of 18) 2224 NM_032773 84859 Hs.518414 NM_032773 HPRD:14308 LRCH3 - leucine-rich repeats and calponin homology (CH) domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_33229 chr22 37959365 37959543 + 6.81633 NA intron (NM_152243, intron 1 of 2) intron (NM_152243, intron 1 of 2) 2983 NM_152243 11135 Hs.225356 NM_152243 HPRD:07303 CDC42EP1 BORG5|CEP1|MSE55 CDC42 effector protein (Rho GTPase binding) 1 protein-coding 13-PTNLD9-TUMOR_peak_52747 chr9 12776186 12776547 + 6.81633 NA intron (NM_203403, intron 1 of 1) intron (NM_203403, intron 1 of 1) 1354 NM_203403 286343 Hs.445356 NM_203403 LURAP1L C9orf150|bA3L8.2 leucine rich adaptor protein 1-like protein-coding 13-PTNLD9-TUMOR_peak_49782 chr7 155006193 155006473 + 6.81633 NA Intergenic Intergenic -83153 NM_198337 3638 Hs.520819 NM_005542 HPRD:03633 INSIG1 CL-6|CL6 insulin induced gene 1 protein-coding 13-PTNLD9-TUMOR_peak_4513 chr1 177244185 177244374 + 6.81633 NA intron (NM_021165, intron 5 of 7) intron (NM_021165, intron 5 of 7) 103646 NM_021165 57795 Hs.495918 NM_021165 HPRD:13891 BRINP2 DBCCR1L2|FAM5B bone morphogenetic protein/retinoic acid inducible neural-specific 2 protein-coding 13-PTNLD9-TUMOR_peak_43721 chr6 9406056 9406345 + 6.81633 NA Intergenic Intergenic 753758 NR_004855 728655 Hs.214343 NR_004855 ENSG00000251164 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 13-PTNLD9-TUMOR_peak_19384 chr16 55505513 55505607 + 6.81633 NA Intergenic L2b|LINE|L2 -7521 NM_004530 4313 Hs.513617 NM_004530 HPRD:00386 MMP2 CLG4|CLG4A|MMP-II|MONA|TBE-1 matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase) protein-coding 13-PTNLD9-TUMOR_peak_11845 chr12 3206687 3206934 + 6.81633 NA intron (NM_006675, intron 2 of 8) intron (NM_006675, intron 2 of 8) 20289 NM_006675 10867 Hs.504517 NM_006675 HPRD:14823 TSPAN9 NET-5|NET5|PP1057 tetraspanin 9 protein-coding 13-PTNLD9-TUMOR_peak_42383 chr5 141093568 141093730 + 6.81633 NA Intergenic Intergenic -31849 NM_022481 64411 Hs.726187 NM_022481 HPRD:09441 ARAP3 CENTD3|DRAG1 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3 protein-coding 13-PTNLD9-TUMOR_peak_29486 chr2 200715508 200715792 + 6.81633 NA non-coding (NR_034096, exon 1 of 4) non-coding (NR_034096, exon 1 of 4) 246 NR_034096 348751 Hs.734578 NR_034096 ENSG00000226124 FTCDNL1 FONG formiminotransferase cyclodeaminase N-terminal like ncRNA 13-PTNLD9-TUMOR_peak_50735 chr8 42065127 42065235 + 6.81633 NA promoter-TSS (NM_033011) promoter-TSS (NM_033011) 13 NM_033011 5327 Hs.491582 NM_000930 HPRD:01419 PLAT T-PA|TPA plasminogen activator, tissue protein-coding 13-PTNLD9-TUMOR_peak_54019 chr9 95794262 95794589 + 6.81432 NA intron (NM_001286993, intron 15 of 17) L1M3|LINE|L1 -17199 NR_121565 101927954 Hs.673794 NR_121565 LOC101927954 - uncharacterized LOC101927954 ncRNA 13-PTNLD9-TUMOR_peak_31689 chr20 56323732 56323924 + 6.81432 NA Intergenic Intergenic -37236 NM_199171 56937 Hs.517155 NM_020182 HPRD:09415 PMEPA1 STAG1|TMEPAI prostate transmembrane protein, androgen induced 1 protein-coding 13-PTNLD9-TUMOR_peak_4670 chr1 182573518 182573680 + 6.81432 NA promoter-TSS (NM_002928) promoter-TSS (NM_002928) -51 NM_002928 6004 Hs.413297 NM_002928 HPRD:03945 RGS16 A28-RGS14|A28-RGS14P|RGS-R regulator of G-protein signaling 16 protein-coding 13-PTNLD9-TUMOR_peak_29346 chr2 191044998 191045192 + 6.81432 NA promoter-TSS (NM_032321) promoter-TSS (NM_032321) -494 NM_001042519 84281 Hs.389311 NM_032321 HPRD:14436 C2orf88 smAKAP chromosome 2 open reading frame 88 protein-coding 13-PTNLD9-TUMOR_peak_36578 chr3 159554837 159554977 + 6.81432 NA intron (NM_014575, intron 2 of 7) intron (NM_014575, intron 2 of 7) -2743 NM_001197109 29970 Hs.134665 NM_014575 HPRD:15302 SCHIP1 SCHIP-1 schwannomin interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_10105 chr11 63328409 63328516 + 6.81432 NA intron (NM_017878, intron 1 of 3) intron (NM_017878, intron 1 of 3) 2393 NM_017878 54979 Hs.272805 NM_017878 HPRD:13670 HRASLS2 PLA1/2-2 HRAS-like suppressor 2 protein-coding 13-PTNLD9-TUMOR_peak_28924 chr2 162929022 162929162 + 6.81432 NA intron (NM_001935, intron 2 of 25) intron (NM_001935, intron 2 of 25) 1960 NM_001935 1803 Hs.368912 NM_001935 HPRD:02187 DPP4 ADABP|ADCP2|CD26|DPPIV|TP103 dipeptidyl-peptidase 4 protein-coding 13-PTNLD9-TUMOR_peak_53764 chr9 84224784 84225055 + 6.81432 NA intron (NM_005077, intron 14 of 19) intron (NM_005077, intron 14 of 19) 78677 NM_005077 7088 Hs.197320 NM_005077 HPRD:02557 TLE1 ESG|ESG1|GRG1 transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_21189 chr17 43099444 43099538 + 6.81432 NA Intergenic CpG 29394 NM_001288655 79877 Hs.463148 NM_024819 HPRD:08012 DCAKD - dephospho-CoA kinase domain containing protein-coding 13-PTNLD9-TUMOR_peak_18674 chr16 19118989 19119348 + 6.81432 NA Intergenic Intergenic -6086 NM_001034841 162073 Hs.530899 NM_001034841 HPRD:18743 ITPRIPL2 - inositol 1,4,5-trisphosphate receptor interacting protein-like 2 protein-coding 13-PTNLD9-TUMOR_peak_9185 chr11 15837878 15838057 + 6.81432 NA Intergenic Intergenic 153200 NR_106721 102464826 NR_106721 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 13-PTNLD9-TUMOR_peak_43289 chr5 179040813 179040967 + 6.81432 NA TTS (NM_005520) TTS (NM_005520) 9821 NM_001257293 3187 Hs.604001 NM_005520 HPRD:03021 HNRNPH1 HNRPH|HNRPH1|hnRNPH heterogeneous nuclear ribonucleoprotein H1 (H) protein-coding 13-PTNLD9-TUMOR_peak_2380 chr1 88442937 88443083 + 6.81432 NA Intergenic Intergenic -605672 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 13-PTNLD9-TUMOR_peak_11753 chr12 248359 248701 + 6.81432 NA intron (NM_015232, intron 3 of 12) intron (NM_015232, intron 3 of 12) 9802 NR_033859 574538 Hs.589138 NR_033859 ENSG00000249695 LOC574538 - uncharacterized LOC574538 ncRNA 13-PTNLD9-TUMOR_peak_38592 chr4 75411805 75412107 + 6.81432 NA Intergenic Intergenic -68635 NM_001657 374 Hs.270833 NM_001657 HPRD:00093 AREG AR|AREGB|CRDGF|SDGF amphiregulin protein-coding 13-PTNLD9-TUMOR_peak_4897 chr1 200153394 200153667 + 6.81432 NA Intergenic Intergenic 141577 NM_001276464 2494 Hs.33446 NM_003822 HPRD:06830 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5, group A, member 2 protein-coding 13-PTNLD9-TUMOR_peak_32612 chr21 47705775 47705978 + 6.81432 NA promoter-TSS (NM_058181) promoter-TSS (NM_058181) -391 NM_058181 54059 Hs.474066 NM_058181 HPRD:10754 YBEY C21orf57 ybeY metallopeptidase (putative) protein-coding 13-PTNLD9-TUMOR_peak_52158 chr8 134221633 134221744 + 6.81310 NA intron (NM_001204870, intron 1 of 1) intron (NM_001204870, intron 1 of 1) 18406 NM_001204869 8840 Hs.492974 NM_003882 WISP1 CCN4|WISP1c|WISP1i|WISP1tc WNT1 inducible signaling pathway protein 1 protein-coding 13-PTNLD9-TUMOR_peak_46635 chr7 577943 578082 + 6.81310 NA Intergenic Intergenic 17984 NR_033963 441307 Hs.521334 NR_033963 FLJ44511 - uncharacterized LOC441307 ncRNA 13-PTNLD9-TUMOR_peak_1481 chr1 44003130 44003479 + 6.81310 NA intron (NM_130440, intron 1 of 32) L2b|LINE|L2 6757 NM_130440 5792 Hs.272062 NM_002840 HPRD:01552 PTPRF LAR protein tyrosine phosphatase, receptor type, F protein-coding 13-PTNLD9-TUMOR_peak_40447 chr5 17097046 17097241 + 6.81310 NA Intergenic Intergenic -119789 NM_001271606 10409 Hs.201641 NM_006317 HPRD:08389 BASP1 CAP-23|CAP23|NAP-22|NAP22 brain abundant, membrane attached signal protein 1 protein-coding 13-PTNLD9-TUMOR_peak_6678 chr10 23706359 23706478 + 6.80850 NA Intergenic MER4D1|LTR|ERV1 -21780 NM_001145373 220213 Hs.499042 NM_001145373 ENSG00000165312 OTUD1 DUBA7|OTDC1 OTU deubiquitinase 1 protein-coding 13-PTNLD9-TUMOR_peak_36479 chr3 155965202 155965399 + 6.80850 NA intron (NM_003471, intron 1 of 13) L2c|LINE|L2 -19628 NR_046617 100874083 Hs.603823 NR_046617 ENSG00000240596 KCNAB1-AS2 - KCNAB1 antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_2084 chr1 65468280 65468781 + 6.80850 NA promoter-TSS (NR_119383) promoter-TSS (NR_119383) -371 NR_119383 101927084 Hs.734218 NR_119383 ENSG00000226891 LINC01359 - long intergenic non-protein coding RNA 1359 ncRNA 13-PTNLD9-TUMOR_peak_31742 chr20 58778609 58778819 + 6.80850 NA intron (NR_046099, intron 3 of 4) intron (NR_046099, intron 3 of 4) 65166 NR_046099 284757 Hs.737441 NM_001004305 HPRD:17342 MIR646HG - MIR646 host gene (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_32084 chr21 30554199 30554321 + 6.80850 NA Intergenic Intergenic -11555 NR_027072 193629 Hs.720711 NM_138968 ENSG00000215533 LINC00189 C21orf109|NCRNA00189 long intergenic non-protein coding RNA 189 ncRNA 13-PTNLD9-TUMOR_peak_29795 chr2 217575702 217575918 + 6.80850 NA Intergenic Intergenic -15538 NM_000599 3488 Hs.607212 NM_000599 HPRD:00901 IGFBP5 IBP5 insulin-like growth factor binding protein 5 protein-coding 13-PTNLD9-TUMOR_peak_47163 chr7 30265638 30265870 + 6.80850 NA Intergenic Intergenic -58169 NM_147128 223082 Hs.263912 NM_147128 HPRD:15894 ZNRF2 RNF202 zinc and ring finger 2 protein-coding 13-PTNLD9-TUMOR_peak_20110 chr16 89181086 89181212 + 6.80850 NA intron (NR_104293, intron 6 of 10) intron (NR_104293, intron 6 of 10) 20932 NM_174917 197322 Hs.461727 NM_174917 HPRD:14117 ACSF3 - acyl-CoA synthetase family member 3 protein-coding 13-PTNLD9-TUMOR_peak_2618 chr1 99826330 99826563 + 6.80850 NA Intergenic LTR16C|LTR|ERVL 96598 NM_014839 9890 Hs.13245 NM_014839 HPRD:07425 LPPR4 LPR4|PHP1|PRG-1|PRG1 lipid phosphate phosphatase-related protein type 4 protein-coding 13-PTNLD9-TUMOR_peak_14741 chr13 49550115 49550298 + 6.80850 NA promoter-TSS (NM_001278438) promoter-TSS (NM_001278438) 158 NM_001079673 22862 Hs.508010 NM_014923 HPRD:13548 FNDC3A FNDC3|HUGO|bA203I16.1|bA203I16.5 fibronectin type III domain containing 3A protein-coding 13-PTNLD9-TUMOR_peak_48587 chr7 100951536 100951698 + 6.80850 NA promoter-TSS (NR_110115) promoter-TSS (NR_110115) -4 NR_110115 101927746 Hs.698373 NR_110115 LOC101927746 - uncharacterized LOC101927746 ncRNA 13-PTNLD9-TUMOR_peak_25372 chr19 49912250 49912364 + 6.80850 NA intron (NM_144688, intron 13 of 19) intron (NM_144688, intron 13 of 19) 14391 NM_178449 113091 Hs.339845 NM_178449 HPRD:16328 PTH2 TIP39 parathyroid hormone 2 protein-coding 13-PTNLD9-TUMOR_peak_36382 chr3 150127878 150127988 + 6.80850 NA exon (NM_014779, exon 1 of 4) exon (NM_014779, exon 1 of 4) 1145 NM_014779 9819 Hs.722470 NM_014779 HPRD:11101 TSC22D2 TILZ4a|TILZ4b|TILZ4c TSC22 domain family, member 2 protein-coding 13-PTNLD9-TUMOR_peak_47148 chr7 29295718 29295962 + 6.80850 NA intron (NM_001293072, intron 1 of 12) intron (NM_001293072, intron 1 of 12) -47254 NR_120522 102724484 Hs.638665 NR_120522 LOC102724484 - uncharacterized LOC102724484 ncRNA 13-PTNLD9-TUMOR_peak_23229 chr18 52429756 52430020 + 6.80850 NA Intergenic L2a|LINE|L2 -65820 NM_004163 5874 Hs.25318 NM_004163 HPRD:04846 RAB27B C25KG RAB27B, member RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_36559 chr3 158629546 158629669 + 6.80850 NA Intergenic LTR18A|LTR|ERVL 109892 NM_001167903 64747 Hs.58663 NM_022736 HPRD:07851 MFSD1 SMAP4 major facilitator superfamily domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_48045 chr7 75993559 75993710 + 6.80659 NA Intergenic Intergenic -5292 NM_012479 7532 Hs.744840 NM_012479 HPRD:05639 YWHAG 14-3-3GAMMA|PPP1R170 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma protein-coding 13-PTNLD9-TUMOR_peak_29689 chr2 208541946 208542040 + 6.80283 NA Intergenic Intergenic -34271 NM_001142300 151195 Hs.471234 NM_152523 HPRD:08809 CCNYL1 - cyclin Y-like 1 protein-coding 13-PTNLD9-TUMOR_peak_17757 chr15 79603430 79603668 + 6.80283 NA non-coding (NR_125394, exon 1 of 4) non-coding (NR_125394, exon 1 of 4) 145 NR_125394 23423 Hs.513058 NM_007364 HPRD:18200 TMED3 C15orf22|P24B|p26 transmembrane emp24 protein transport domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_43612 chr6 5206253 5206478 + 6.80283 NA intron (NM_001164840, intron 2 of 2) intron (NM_001164840, intron 2 of 2) 54818 NM_001164840 57128 Hs.387755 NM_020408 HPRD:12855 LYRM4 C6orf149|CGI-203|COXPD19|ISD11 LYR motif containing 4 protein-coding 13-PTNLD9-TUMOR_peak_8425 chr10 119312995 119313321 + 6.80283 NA Intergenic CpG -8579 NR_002791 196047 Hs.312592 NR_002791 EMX2OS EMX2-AS1|NCRNA00045 EMX2 opposite strand/antisense RNA ncRNA 13-PTNLD9-TUMOR_peak_27194 chr2 70026247 70026496 + 6.80283 NA intron (NM_001153, intron 3 of 12) LTR19C|LTR|ERV1 -30447 NM_178439 64395 Hs.293971 NM_178439 GMCL1 BTBD13|GCL|GCL1|SPATA29 germ cell-less, spermatogenesis associated 1 protein-coding 13-PTNLD9-TUMOR_peak_28276 chr2 121344605 121344776 + 6.80283 NA Intergenic CpG -120765 NR_027181 84931 Hs.334519 NM_032845 HPRD:08604 LINC01101 - long intergenic non-protein coding RNA 1101 ncRNA 13-PTNLD9-TUMOR_peak_1392 chr1 42289277 42289429 + 6.80283 NA intron (NM_024503, intron 1 of 8) intron (NM_024503, intron 1 of 8) 95025 NM_024503 59269 Hs.403972 NM_024503 HPRD:09442 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 13-PTNLD9-TUMOR_peak_23531 chr18 77300739 77300849 + 6.80283 NA Intergenic Intergenic -139007 NM_004715 9150 Hs.465490 NM_004715 HPRD:05377 CTDP1 CCFDN|FCP1 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1 protein-coding 13-PTNLD9-TUMOR_peak_12473 chr12 32597958 32598058 + 6.80283 NA Intergenic Intergenic -57033 NM_139241 121512 Hs.117835 NM_139241 HPRD:16891 FGD4 CMT4H|FRABP|ZFYVE6 FYVE, RhoGEF and PH domain containing 4 protein-coding 13-PTNLD9-TUMOR_peak_55738 chrX 40595103 40595270 + 6.80283 NA promoter-TSS (NM_004229) promoter-TSS (NM_004229) -382 NM_004229 9282 Hs.407604 NM_004229 HPRD:02172 MED14 CRSP150|CRSP2|CSRP|CXorf4|DRIP150|EXLM1|RGR1|TRAP170 mediator complex subunit 14 protein-coding 13-PTNLD9-TUMOR_peak_46617 chr7 96028 96289 + 6.80283 NA Intergenic Tigger1|DNA|TcMar-Tigger -53560 NR_108065 100507642 Hs.557780 NR_108064 LOC100507642 - uncharacterized LOC100507642 ncRNA 13-PTNLD9-TUMOR_peak_47222 chr7 34299955 34300134 + 6.80283 NA Intergenic LTR16A1|LTR|ERVL 355521 NM_133468 168667 Hs.660998 NM_133468 HPRD:16368 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 13-PTNLD9-TUMOR_peak_36576 chr3 159532206 159532300 + 6.80283 NA intron (NM_014575, intron 2 of 7) intron (NM_014575, intron 2 of 7) -25397 NM_001197109 29970 Hs.134665 NM_014575 HPRD:15302 SCHIP1 SCHIP-1 schwannomin interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_1640 chr1 47133652 47133804 + 6.80283 NA intron (NM_022745, intron 1 of 8) CpG 371 NM_001042546 64756 Hs.100874 NM_022745 HPRD:12332 ATPAF1 ATP11|ATP11p ATP synthase mitochondrial F1 complex assembly factor 1 protein-coding 13-PTNLD9-TUMOR_peak_30521 chr20 18184445 18184711 + 6.80283 NA Intergenic L1M4|LINE|L1 58835 NR_028402 57325 Hs.488051 NM_020536 HPRD:16765 CSRP2BP ATAC2|CRP2BP|KAT14|PRO1194|dJ717M23.1 CSRP2 binding protein protein-coding 13-PTNLD9-TUMOR_peak_13110 chr12 62586583 62586677 + 6.80283 NA promoter-TSS (NM_178539) promoter-TSS (NM_178539) -10 NM_178539 338811 Hs.269745 NM_178539 HPRD:16876 FAM19A2 TAFA-2|TAFA2 family with sequence similarity 19 (chemokine (C-C motif)-like), member A2 protein-coding 13-PTNLD9-TUMOR_peak_38660 chr4 78539944 78540041 + 6.80283 NA Intergenic Intergenic 107085 NM_006419 10563 Hs.100431 NM_006419 HPRD:05513 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 chemokine (C-X-C motif) ligand 13 protein-coding 13-PTNLD9-TUMOR_peak_30579 chr20 21165516 21165664 + 6.80283 NA intron (NM_018474, intron 6 of 12) AluJr4|SINE|Alu 33337 NR_109956 101929591 Hs.656066 NR_109956 ENSG00000232712 KIZ-AS1 - KIZ antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_14518 chr13 30689196 30689359 + 6.80283 NA Intergenic CpG 178609 NR_033889 440131 Hs.132371 NM_001010918 LINC00544 - long intergenic non-protein coding RNA 544 ncRNA 13-PTNLD9-TUMOR_peak_28993 chr2 167845404 167845504 + 6.80283 NA intron (NM_001079810, intron 2 of 9) L1HS|LINE|L1 100457 NM_152381 129446 Hs.73680 NM_152381 HPRD:10267 XIRP2 CMYA3 xin actin-binding repeat containing 2 protein-coding 13-PTNLD9-TUMOR_peak_9267 chr11 19298566 19298731 + 6.80283 NA Intergenic Intergenic -35446 NM_001256372 79733 Hs.523526 NM_024680 HPRD:10981 E2F8 E2F-8 E2F transcription factor 8 protein-coding 13-PTNLD9-TUMOR_peak_5365 chr1 212692005 212692137 + 6.80283 NA Intergenic Intergenic -46605 NM_001030287 467 Hs.460 NM_001674 HPRD:04395 ATF3 - activating transcription factor 3 protein-coding 13-PTNLD9-TUMOR_peak_45595 chr6 81974955 81975109 + 6.80283 NA Intergenic Intergenic 487396 NM_017633 55603 Hs.10784 NM_017633 HPRD:13311 FAM46A C6orf37|XTP11 family with sequence similarity 46, member A protein-coding 13-PTNLD9-TUMOR_peak_11477 chr11 123023844 123023967 + 6.80283 NA intron (NM_024769, intron 1 of 6) intron (NM_024769, intron 1 of 6) 42102 NM_024769 79827 Hs.591949 NM_024769 HPRD:16513 CLMP ACAM|ASAM|CSBM|CSBS CXADR-like membrane protein protein-coding 13-PTNLD9-TUMOR_peak_33182 chr22 35998344 35998593 + 6.80283 NA Intergenic Intergenic 14916 NM_005368 4151 Hs.517586 NM_005368 HPRD:01170 MB PVALB|myoglobgin myoglobin protein-coding 13-PTNLD9-TUMOR_peak_23727 chr19 4518626 4518720 + 6.80283 NA promoter-TSS (NM_001080400) promoter-TSS (NM_001080400) -957 NM_001080400 729359 Hs.591387 NM_001080400 ENSG00000167676 PLIN4 KIAA1881|S3-12 perilipin 4 protein-coding 13-PTNLD9-TUMOR_peak_27877 chr2 102699600 102699924 + 6.80283 NA intron (NM_001288706, intron 1 of 11) intron (NM_001288706, intron 1 of 11) 12926 NM_001288706 3554 Hs.701982 NM_000877 HPRD:00994 IL1R1 CD121A|D2S1473|IL-1R-alpha|IL1R|IL1RA|P80 interleukin 1 receptor, type I protein-coding 13-PTNLD9-TUMOR_peak_24930 chr19 39528941 39529113 + 6.80283 NA Intergenic MER66B|LTR|ERV1 -5829 NM_178820 126433 Hs.187461 NM_178820 HPRD:16440 FBXO27 FBG5|Fbx27 F-box protein 27 protein-coding 13-PTNLD9-TUMOR_peak_38839 chr4 88443201 88443300 + 6.80283 NA intron (NM_001128310, intron 1 of 11) intron (NM_001128310, intron 1 of 11) 7405 NM_001128310 8404 Hs.62886 NM_004684 HPRD:06919 SPARCL1 MAST 9|MAST9|PIG33|SC1 SPARC-like 1 (hevin) protein-coding 13-PTNLD9-TUMOR_peak_15430 chr14 30316025 30316290 + 6.80283 NA intron (NM_002742, intron 1 of 17) intron (NM_002742, intron 1 of 17) 80742 NM_002742 5587 Hs.508999 NM_002742 HPRD:05668 PRKD1 PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 13-PTNLD9-TUMOR_peak_53533 chr9 70646267 70646575 + 6.79973 NA Intergenic SST1|Satellite|centr -156210 NM_001286836 220869 Hs.355950 NM_001024916 HPRD:14134 CBWD5 DC36 COBW domain containing 5 protein-coding 13-PTNLD9-TUMOR_peak_51238 chr8 86575535 86575677 + 6.78952 NA promoter-TSS (NR_003594).2 promoter-TSS (NR_003594).2 -864 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene) pseudo 13-PTNLD9-TUMOR_peak_17354 chr15 58766124 58766227 + 6.78733 NA intron (NR_120338, intron 2 of 2) intron (NR_120338, intron 2 of 2) 24759 NR_120338 101928694 Hs.655781 NR_120338 ENSG00000259293 LOC101928694 - uncharacterized LOC101928694 ncRNA 13-PTNLD9-TUMOR_peak_51870 chr8 125538199 125538335 + 6.78733 NA intron (NM_032026, intron 1 of 11) LTR56|LTR|ERV1 13062 NM_001146160 83940 Hs.170568 NM_032026 HPRD:11621 TATDN1 - TatD DNase domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_36280 chr3 145968357 145968451 + 6.78733 NA 5' UTR (NM_001128305, exon 1 of 9) 5' UTR (NM_001128305, exon 1 of 9) 247 NM_001128305 57088 Hs.477869 NM_020353 HPRD:07401 PLSCR4 TRA1 phospholipid scramblase 4 protein-coding 13-PTNLD9-TUMOR_peak_54155 chr9 100321440 100321702 + 6.78733 NA intron (NM_001166116, intron 4 of 9) intron (NM_001166116, intron 4 of 9) 57650 NM_003275 7111 Hs.404289 NM_003275 HPRD:01838 TMOD1 D9S57E|ETMOD|TMOD tropomodulin 1 protein-coding 13-PTNLD9-TUMOR_peak_12042 chr12 7260361 7260516 + 6.78733 NA promoter-TSS (NR_026947) promoter-TSS (NR_026947) -466 NR_026947 283314 Hs.744212 NR_026947 ENSG00000205885 C1RL-AS1 MATL2963 C1RL antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_36523 chr3 157154602 157154731 + 6.78733 NA promoter-TSS (NM_002852) promoter-TSS (NM_002852) 86 NM_002852 5806 Hs.591286 NM_002852 HPRD:03928 PTX3 TNFAIP5|TSG-14 pentraxin 3, long protein-coding 13-PTNLD9-TUMOR_peak_22280 chr17 79651356 79651507 + 6.78658 NA promoter-TSS (NM_001040025) promoter-TSS (NM_001040025) 469 NM_004712 9146 Hs.661056 NM_004712 HPRD:05085 HGS HRS hepatocyte growth factor-regulated tyrosine kinase substrate protein-coding 13-PTNLD9-TUMOR_peak_52082 chr8 131457114 131457208 + 6.78411 NA Intergenic Intergenic -1255 NM_018482 50807 Hs.655552 NM_018482 HPRD:05809 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 13-PTNLD9-TUMOR_peak_41571 chr5 96050710 96050862 + 6.78411 NA intron (NM_001284212, intron 1 of 27) intron (NM_001284212, intron 1 of 27) 12244 NM_001284212 831 Hs.436186 NM_001750 HPRD:00233 CAST BS-17 calpastatin protein-coding 13-PTNLD9-TUMOR_peak_50267 chr8 22033866 22034080 + 6.78411 NA intron (NR_033404, intron 3 of 15) intron (NR_033404, intron 3 of 15) 11320 NM_006129 649 Hs.1274 NM_001199 HPRD:00209 BMP1 OI13|PCOLC|PCP|PCP2|TLD bone morphogenetic protein 1 protein-coding 13-PTNLD9-TUMOR_peak_51880 chr8 125901078 125901223 + 6.78214 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -53100 NR_027321 157381 Hs.638933 NR_027321 ENSG00000249816 LINC00964 - long intergenic non-protein coding RNA 964 ncRNA 13-PTNLD9-TUMOR_peak_19315 chr16 50625907 50626071 + 6.78214 NA intron (NM_033119, intron 3 of 9) intron (NM_033119, intron 3 of 9) 43748 NM_033119 85407 Hs.187578 NM_033119 NKD1 Naked1 naked cuticle homolog 1 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_1492 chr1 44101751 44101962 + 6.78214 NA Intergenic MIRb|SINE|MIR -13941 NM_014663 9682 Hs.155983 NM_014663 HPRD:17168 KDM4A JHDM3A|JMJD2|JMJD2A|TDRD14A lysine (K)-specific demethylase 4A protein-coding 13-PTNLD9-TUMOR_peak_4616 chr1 180892356 180892549 + 6.78214 NA intron (NM_020950, intron 3 of 8) MER21B|LTR|ERVL 10139 NM_020950 57710 Hs.734816 NM_020950 KIAA1614 - KIAA1614 protein-coding 13-PTNLD9-TUMOR_peak_35599 chr3 123421053 123421158 + 6.78214 NA intron (NM_053025, intron 16 of 33) intron (NM_053025, intron 16 of 33) 12614 NR_046629 100873940 Hs.667316 NR_046629 MYLK-AS2 - MYLK antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_52167 chr8 134353467 134353614 + 6.78214 NA Intergenic MER20B|DNA|hAT-Charlie -43993 NM_006096 10397 Hs.372914 NM_006096 HPRD:05586 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 13-PTNLD9-TUMOR_peak_352 chr1 9903145 9903327 + 6.78214 NA Intergenic Intergenic -18686 NM_014944 22883 Hs.29665 NM_014944 HPRD:10837 CLSTN1 ALC-ALPHA|CDHR12|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2 calsyntenin 1 protein-coding 13-PTNLD9-TUMOR_peak_14276 chr12 126733591 126733855 + 6.78214 NA Intergenic Intergenic 153185 NR_110053 101927464 Hs.443932 NR_110053 ENSG00000256342 LOC101927464 - uncharacterized LOC101927464 ncRNA 13-PTNLD9-TUMOR_peak_24502 chr19 21511716 21511964 + 6.78214 NA intron (NM_001297560, intron 1 of 3) intron (NM_001297560, intron 1 of 3) 372 NM_021269 7562 Hs.466296 NM_021269 HPRD:18322 ZNF708 KOX8|ZNF15|ZNF15L1 zinc finger protein 708 protein-coding 13-PTNLD9-TUMOR_peak_9751 chr11 48028074 48028168 + 6.78214 NA intron (NM_002843, intron 1 of 24) intron (NM_002843, intron 1 of 24) 26011 NM_002843 5795 Hs.318547 NM_002843 HPRD:02955 PTPRJ CD148|DEP1|HPTPeta|R-PTP-ETA|SCC1 protein tyrosine phosphatase, receptor type, J protein-coding 13-PTNLD9-TUMOR_peak_17683 chr15 75550748 75550902 + 6.77870 NA promoter-TSS (NM_001164404) promoter-TSS (NM_001164404) -74 NM_001164404 653641 Hs.540230 NM_001164404 GOLGA6C - golgin A6 family, member C protein-coding 13-PTNLD9-TUMOR_peak_43303 chr5 179220877 179220993 + 6.77870 NA promoter-TSS (NM_145867) promoter-TSS (NM_145867) -51 NM_145867 4056 Hs.706741 NM_145867 HPRD:02004 LTC4S - leukotriene C4 synthase protein-coding 13-PTNLD9-TUMOR_peak_26718 chr2 43385703 43385848 + 6.77842 NA Intergenic Intergenic 67970 NM_006887 678 Hs.503093 NM_006887 HPRD:18319 ZFP36L2 BRF2|ERF-2|ERF2|RNF162C|TIS11D ZFP36 ring finger protein-like 2 protein-coding 13-PTNLD9-TUMOR_peak_14707 chr13 45906415 45906579 + 6.77202 NA Intergenic Intergenic 5247 NR_002967 677814 Hs.374596 NR_002967 SNORA31 ACA31 small nucleolar RNA, H/ACA box 31 snoRNA 13-PTNLD9-TUMOR_peak_7958 chr10 89602164 89602323 + 6.77202 NA intron (NR_028492, intron 3 of 3) intron (NR_028492, intron 3 of 3) 20951 NM_001126049 100144748 Hs.559820 NM_001126049 ENSG00000227268 KLLN CWS4|KILLIN killin, p53-regulated DNA replication inhibitor protein-coding 13-PTNLD9-TUMOR_peak_42871 chr5 160357489 160357743 + 6.77202 NA Intergenic Intergenic 8017 NR_027111 285629 Hs.554279 NR_027111 ENSG00000253417 LOC285629 - uncharacterized LOC285629 ncRNA 13-PTNLD9-TUMOR_peak_21382 chr17 47269505 47269629 + 6.77202 NA Intergenic CpG 17176 NM_031498 2793 Hs.181781 NM_031498 HPRD:06792 GNGT2 G-GAMMA-8|G-GAMMA-C|GNG8|GNG9|GNGT8 guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2 protein-coding 13-PTNLD9-TUMOR_peak_35540 chr3 121722529 121722648 + 6.77202 NA intron (NM_001199799, intron 3 of 7) intron (NM_001199799, intron 3 of 7) 18539 NM_001199800 286676 Hs.98484 NM_175924 HPRD:13735 ILDR1 DFNB42|ILDR1alpha|ILDR1alpha'|ILDR1beta immunoglobulin-like domain containing receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_11923 chr12 5687029 5687202 + 6.77202 NA intron (NM_001278596, intron 23 of 25) intron (NM_001278596, intron 23 of 25) 83817 NM_002527 4908 Hs.99171 NM_002527 HPRD:01219 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 13-PTNLD9-TUMOR_peak_19740 chr16 73024232 73024366 + 6.77202 NA intron (NM_006885, intron 1 of 9) intron (NM_006885, intron 1 of 9) 57975 NM_006885 463 Hs.598297 NM_006885 HPRD:00075 ZFHX3 ATBF1|ATBT|ZNF927 zinc finger homeobox 3 protein-coding 13-PTNLD9-TUMOR_peak_13811 chr12 110449976 110450316 + 6.77202 NA intron (NM_033121, intron 2 of 14) AluJb|SINE|Alu 12911 NM_033121 88455 Hs.528703 NM_033121 HPRD:12458 ANKRD13A ANKRD13|NY-REN-25 ankyrin repeat domain 13A protein-coding 13-PTNLD9-TUMOR_peak_34783 chr3 58571182 58571396 + 6.77202 NA intron (NM_001282714, intron 2 of 4) intron (NM_001282714, intron 2 of 4) 1551 NM_001282713 11170 Hs.506357 NM_007177 HPRD:09753 FAM107A DRR1|TU3A family with sequence similarity 107, member A protein-coding 13-PTNLD9-TUMOR_peak_4005 chr1 157980648 157980847 + 6.77202 NA intron (NM_001286349, intron 1 of 12) intron (NM_001286349, intron 1 of 12) 17684 NM_018240 55243 Hs.272234 NM_018240 HPRD:06306 KIRREL NEPH1 kin of IRRE like (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_37048 chr3 186008702 186008894 + 6.77202 NA intron (NM_001080744, intron 5 of 23) L1MEc|LINE|L1 71225 NM_001080745 1608 Hs.683449 NM_001346 HPRD:03510 DGKG DAGK3|DGK-GAMMA diacylglycerol kinase, gamma 90kDa protein-coding 13-PTNLD9-TUMOR_peak_17888 chr15 85720328 85720428 + 6.77202 NA Intergenic LTR18B|LTR|ERVL 28140 NR_049748 642423 Hs.681665 NR_049748 LOC642423 - golgin A2 pseudogene pseudo 13-PTNLD9-TUMOR_peak_43717 chr6 8776201 8776299 + 6.77202 NA intron (NR_038980, intron 3 of 4) L1PA2|LINE|L1 123808 NR_004855 728655 Hs.214343 NR_004855 ENSG00000251164 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 13-PTNLD9-TUMOR_peak_18102 chr15 101464246 101464367 + 6.77202 NA intron (NM_024652, intron 1 of 33) L2b|LINE|L2 4846 NM_024652 79705 Hs.407918 NM_024652 HPRD:14319 LRRK1 RIPK6|Roco1 leucine-rich repeat kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_27958 chr2 109288757 109288863 + 6.77202 NA exon (NM_001193485, exon 4 of 10) exon (NM_001193485, exon 4 of 10) 17542 NM_001193485 3987 Hs.597715 NM_004987 HPRD:03978 LIMS1 PINCH|PINCH-1|PINCH1 LIM and senescent cell antigen-like domains 1 protein-coding 13-PTNLD9-TUMOR_peak_32820 chr22 21336457 21336568 + 6.77202 NA promoter-TSS (NM_006767) promoter-TSS (NM_006767) -46 NM_006767 8216 Hs.78788 NM_006767 HPRD:08992 LZTR1 BTBD29|LZTR-1|SWNTS2 leucine-zipper-like transcription regulator 1 protein-coding 13-PTNLD9-TUMOR_peak_13258 chr12 69030237 69030354 + 6.77202 NA intron (NM_001251917, intron 1 of 5) AluJr4|SINE|Alu -9140 NR_033335 100379132 Hs.724530 NR_033335 ENSG00000206650 SNORA70G U70G small nucleolar RNA, H/ACA box 70G snoRNA 13-PTNLD9-TUMOR_peak_6005 chr1 236629468 236629568 + 6.77202 NA intron (NM_145861, intron 4 of 5) intron (NM_145861, intron 4 of 5) -51996 NM_201545 3964 Hs.4082 NM_006499 HPRD:09356 LGALS8 Gal-8|PCTA-1|PCTA1|Po66-CBP lectin, galactoside-binding, soluble, 8 protein-coding 13-PTNLD9-TUMOR_peak_48633 chr7 102080711 102080836 + 6.77202 NA intron (NM_001126340, intron 3 of 3) intron (NM_001126340, intron 3 of 3) 6796 NM_032831 80228 Hs.363308 NM_032831 HPRD:09860 ORAI2 C7orf19|CBCIP2|MEM142B|TMEM142B ORAI calcium release-activated calcium modulator 2 protein-coding 13-PTNLD9-TUMOR_peak_25941 chr2 1590758 1590989 + 6.77202 NA Intergenic Intergenic 157446 NM_012293 7837 Hs.332197 NM_012293 ENSG00000130508 PXDN COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO peroxidasin homolog (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_29074 chr2 172543881 172544085 + 6.77202 NA promoter-TSS (NM_001271786) promoter-TSS (NM_001271786) 64 NM_001271786 1781 Hs.546250 NM_001378 HPRD:04512 DYNC1I2 DNCI2|IC2 dynein, cytoplasmic 1, intermediate chain 2 protein-coding 13-PTNLD9-TUMOR_peak_46049 chr6 129811733 129811892 + 6.77202 NA intron (NM_001079823, intron 55 of 63) LTR90A|LTR|LTR 219558 NM_033515 93663 Hs.486458 NM_033515 HPRD:12474 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 13-PTNLD9-TUMOR_peak_23091 chr18 45479945 45480058 + 6.77202 NA Intergenic Intergenic -22484 NM_001003652 4087 Hs.12253 NM_005901 HPRD:03221 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding 13-PTNLD9-TUMOR_peak_47910 chr7 73437586 73437680 + 6.77202 NA Intergenic Intergenic -4486 NM_001278914 2006 Hs.647061 NM_000501 HPRD:00556 ELN SVAS|WBS|WS elastin protein-coding 13-PTNLD9-TUMOR_peak_47127 chr7 28195634 28195874 + 6.77202 NA intron (NM_175061, intron 1 of 4) intron (NM_175061, intron 1 of 4) -24322 NR_034097 100128081 Hs.434307 NR_034097 JAZF1-AS1 - JAZF1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_8084 chr10 98273550 98273835 + 6.77202 NA promoter-TSS (NM_012465) promoter-TSS (NM_012465) -9 NM_012465 7093 Hs.154296 NM_012465 HPRD:05993 TLL2 - tolloid-like 2 protein-coding 13-PTNLD9-TUMOR_peak_52209 chr8 135484562 135484668 + 6.77202 NA Intergenic Intergenic -125699 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_10755 chr11 79075165 79075356 + 6.77202 NA intron (NM_001098816, intron 1 of 33) L2b|LINE|L2 37893 NR_030598 100126333 NR_030598 miRBase:MI0005543 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 13-PTNLD9-TUMOR_peak_25698 chr19 55999067 55999172 + 6.77202 NA promoter-TSS (NM_001144950) promoter-TSS (NM_001144950) -751 NM_001144950 284297 Hs.554182 NM_182571 HPRD:11444 SSC5D - scavenger receptor cysteine rich family, 5 domains protein-coding 13-PTNLD9-TUMOR_peak_13499 chr12 95050077 95050182 + 6.77202 NA Intergenic MLT1H|LTR|ERVL-MaLR -5791 NM_020698 57458 Hs.370410 NM_020698 HPRD:15519 TMCC3 - transmembrane and coiled-coil domain family 3 protein-coding 13-PTNLD9-TUMOR_peak_6935 chr10 35379247 35379548 + 6.77202 NA promoter-TSS (NM_003591) promoter-TSS (NM_003591) -86 NM_003591 8453 Hs.82919 NM_003591 HPRD:06786 CUL2 - cullin 2 protein-coding 13-PTNLD9-TUMOR_peak_55841 chrX 49012231 49012377 + 6.77202 NA Intergenic Intergenic -6877 NM_024859 79917 Hs.193170 NM_024859 MAGIX JM10|PDZX MAGI family member, X-linked protein-coding 13-PTNLD9-TUMOR_peak_49001 chr7 128531315 128531536 + 6.76799 NA intron (NM_001135914, intron 17 of 36) intron (NM_001135914, intron 17 of 36) 19348 NM_001135914 375616 Hs.371746 NM_199349 KCP CRIM2|KCP1|NET67 kielin/chordin-like protein protein-coding 13-PTNLD9-TUMOR_peak_6832 chr10 30722289 30722489 + 6.76799 NA promoter-TSS (NM_001244134) promoter-TSS (NM_001244134) -561 NM_001244134 1326 Hs.432453 NM_005204 HPRD:01863 MAP3K8 COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT mitogen-activated protein kinase kinase kinase 8 protein-coding 13-PTNLD9-TUMOR_peak_51419 chr8 101877478 101877596 + 6.76193 NA Intergenic Intergenic 85262 NM_001135702 7534 Hs.492407 NM_003406 HPRD:03183 YWHAZ 14-3-3-zeta|HEL-S-3|HEL4|KCIP-1|YWHAD tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta protein-coding 13-PTNLD9-TUMOR_peak_39188 chr4 120134170 120134418 + 6.76193 NA intron (NM_019050, intron 1 of 17) intron (NM_019050, intron 1 of 17) 512 NM_019050 54532 Hs.431081 NM_019050 HPRD:11669 USP53 - ubiquitin specific peptidase 53 protein-coding 13-PTNLD9-TUMOR_peak_44680 chr6 33396489 33396659 + 6.76148 NA intron (NM_006772, intron 3 of 18) intron (NM_006772, intron 3 of 18) 8727 NM_006772 8831 Hs.586264 NM_006772 HPRD:16018 SYNGAP1 MRD5|RASA1|RASA5|SYNGAP synaptic Ras GTPase activating protein 1 protein-coding 13-PTNLD9-TUMOR_peak_3292 chr1 145216697 145216811 + 6.76123 NA intron (NM_203458, intron 1 of 4) intron (NM_203458, intron 1 of 4) 7641 NM_203458 388677 Hs.655156 NM_203458 HPRD:14833 NOTCH2NL N2N notch 2 N-terminal like protein-coding 13-PTNLD9-TUMOR_peak_13466 chr12 90754179 90754309 + 6.76074 NA Intergenic L2c|LINE|L2 -557556 NR_038868 439916 Hs.350600 NM_001039384 ENSG00000196243 LINC00615 C12orf37 long intergenic non-protein coding RNA 615 ncRNA 13-PTNLD9-TUMOR_peak_36373 chr3 150004465 150004577 + 6.76074 NA intron (NR_110186, intron 2 of 3) intron (NR_110186, intron 2 of 3) 37013 NR_110186 101928022 Hs.555199 NR_110186 ENSG00000243550 LINC01214 - long intergenic non-protein coding RNA 1214 ncRNA 13-PTNLD9-TUMOR_peak_25926 chr2 849014 849108 + 6.76074 NA intron (NR_111963, intron 1 of 2) intron (NR_111963, intron 1 of 2) 15051 NR_033880 339822 Hs.651879 NR_033880 ENSG00000237667 LINC01115 - long intergenic non-protein coding RNA 1115 ncRNA 13-PTNLD9-TUMOR_peak_34889 chr3 67698033 67698165 + 6.76074 NA intron (NM_003848, intron 1 of 10) intron (NM_003848, intron 1 of 10) 6939 NM_003848 8801 Hs.644919 NM_003848 HPRD:06799 SUCLG2 GBETA succinate-CoA ligase, GDP-forming, beta subunit protein-coding 13-PTNLD9-TUMOR_peak_34182 chr3 31418785 31418891 + 6.76074 NA Intergenic Intergenic -155155 NM_178862 201595 Hs.475812 NM_178862 STT3B CDG1X|SIMP|STT3-B STT3B, subunit of the oligosaccharyltransferase complex (catalytic) protein-coding 13-PTNLD9-TUMOR_peak_29849 chr2 219774053 219774198 + 6.76074 NA intron (NR_110238, intron 3 of 4) intron (NR_110238, intron 3 of 4) 21234 NR_110238 101928537 Hs.611129 NR_110238 ENSG00000228135 LINC01494 - long intergenic non-protein coding RNA 1494 ncRNA 13-PTNLD9-TUMOR_peak_48839 chr7 112430081 112430193 + 6.76074 NA intron (NM_001287497, intron 1 of 5) CpG 341 NM_022484 64418 Hs.606345 NM_022484 TMEM168 - transmembrane protein 168 protein-coding 13-PTNLD9-TUMOR_peak_39684 chr4 154145265 154145406 + 6.76074 NA intron (NM_015271, intron 1 of 11) intron (NM_015271, intron 1 of 11) 19737 NM_015271 23321 Hs.435711 NM_015271 HPRD:10279 TRIM2 CMT2R|RNF86 tripartite motif containing 2 protein-coding 13-PTNLD9-TUMOR_peak_14971 chr13 97858386 97858481 + 6.76074 NA Intergenic Intergenic -16117 NM_207304 10150 Hs.657347 NM_144778 HPRD:09543 MBNL2 MBLL|MBLL39|PRO2032 muscleblind-like splicing regulator 2 protein-coding 13-PTNLD9-TUMOR_peak_52146 chr8 133889719 133889817 + 6.76074 NA intron (NM_003235, intron 5 of 47) intron (NM_003235, intron 5 of 47) 10563 NM_003235 7038 Hs.654591 NM_003235 HPRD:01782 TG AITD3|TGN thyroglobulin protein-coding 13-PTNLD9-TUMOR_peak_2223 chr1 77259515 77259676 + 6.76074 NA Intergenic Intergenic -73591 NM_030965 81849 Hs.303609 NM_030965 ST6GALNAC5 SIAT7E|ST6GalNAcV ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 protein-coding 13-PTNLD9-TUMOR_peak_18425 chr16 8223264 8223363 + 6.76074 NA Intergenic Intergenic 364515 NM_001290098 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 13-PTNLD9-TUMOR_peak_47941 chr7 73877088 73877198 + 6.76074 NA intron (NM_005685, intron 1 of 26) intron (NM_005685, intron 1 of 26) 9023 NM_001199207 9569 Hs.647056 NM_005685 HPRD:08379 GTF2IRD1 BEN|CREAM1|GTF3|MUSTRD1|RBAP2|WBS|WBSCR11|WBSCR12|hMusTRD1alpha1 GTF2I repeat domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_38950 chr4 100632232 100632400 + 6.76074 NA Intergenic Intergenic -105665 NM_014395 27071 Hs.436271 NM_014395 HPRD:05773 DAPP1 BAM32 dual adaptor of phosphotyrosine and 3-phosphoinositides protein-coding 13-PTNLD9-TUMOR_peak_34962 chr3 72429545 72429785 + 6.76074 NA intron (NM_012234, intron 1 of 3) AluSx1|SINE|Alu 66109 NM_012234 23429 Hs.7910 NM_012234 RYBP AAP1|DEDAF|YEAF1 RING1 and YY1 binding protein protein-coding 13-PTNLD9-TUMOR_peak_11786 chr12 1045686 1045780 + 6.76074 NA intron (NM_001297419, intron 1 of 11) AluJr4|SINE|Alu -3491 NM_001297420 5893 Hs.410355 NM_134422 HPRD:11855 RAD52 - RAD52 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_6148 chr1 245528498 245528603 + 6.76074 NA intron (NM_018012, intron 2 of 14) intron (NM_018012, intron 2 of 14) 210263 NM_018012 55083 Hs.368096 NM_018012 ENSG00000162849 KIF26B - kinesin family member 26B protein-coding 13-PTNLD9-TUMOR_peak_42499 chr5 146027428 146027677 + 6.76074 NA intron (NR_073526, intron 5 of 8) intron (NR_073526, intron 5 of 8) -131876 NM_194251 134391 Hs.483732 NM_194251 GPR151 GALR4|GALRL|GPCR|PGR7 G protein-coupled receptor 151 protein-coding 13-PTNLD9-TUMOR_peak_33146 chr22 32446752 32446856 + 6.76074 NA intron (NM_000343, intron 2 of 14) intron (NM_000343, intron 2 of 14) 7785 NM_000343 6523 Hs.1964 NM_000343 HPRD:01668 SLC5A1 D22S675|NAGT|SGLT1 solute carrier family 5 (sodium/glucose cotransporter), member 1 protein-coding 13-PTNLD9-TUMOR_peak_56526 chrX 134138244 134138374 + 6.76074 NA Intergenic CpG 13341 NM_001163438 644538 Hs.42239 NM_001163438 ENSG00000184785 SMIM10 CXorf69 small integral membrane protein 10 protein-coding 13-PTNLD9-TUMOR_peak_55056 chr9 139891535 139891710 + 6.76044 NA promoter-TSS (NM_004669) promoter-TSS (NM_004669) -598 NM_004669 9022 Hs.64746 NM_004669 CLIC3 - chloride intracellular channel 3 protein-coding 13-PTNLD9-TUMOR_peak_19039 chr16 30968449 30968603 + 6.76044 NA promoter-TSS (NM_014712) promoter-TSS (NM_014712) -89 NM_014712 9739 Hs.297483 NM_014712 HPRD:13795 SETD1A KMT2F|Set1|Set1A SET domain containing 1A protein-coding 13-PTNLD9-TUMOR_peak_43295 chr5 179085326 179085613 + 6.76044 NA Intergenic LTR16E2|LTR|ERVL -13422 NM_001142306 285679 Hs.558748 NM_001013718 ENSG00000204661 C5orf60 - chromosome 5 open reading frame 60 protein-coding 13-PTNLD9-TUMOR_peak_4191 chr1 162508703 162508955 + 6.76044 NA Intergenic Intergenic -22467 NM_003115 6675 Hs.492859 NM_003115 HPRD:04178 UAP1 AGX|AGX1|AGX2|SPAG2 UDP-N-acetylglucosamine pyrophosphorylase 1 protein-coding 13-PTNLD9-TUMOR_peak_2609 chr1 98791807 98791952 + 6.75884 NA Intergenic AluJr4|SINE|Alu 115612 NR_046088 729987 Hs.683961 NR_046088 ENSG00000226053 LOC729987 - uncharacterized LOC729987 ncRNA 13-PTNLD9-TUMOR_peak_43146 chr5 175523566 175523964 + 6.75884 NA intron (NM_001265615, intron 5 of 19) intron (NM_001265615, intron 5 of 19) -22787 NR_038402 100507387 Hs.368516 NR_038402 ENSG00000182230 LOC100507387 - uncharacterized LOC100507387 ncRNA 13-PTNLD9-TUMOR_peak_1471 chr1 43889688 43889824 + 6.75884 NA intron (NM_015284, intron 15 of 70) intron (NM_015284, intron 15 of 70) -24454 NR_106793 102465440 NR_106793 MIR6735 hsa-mir-6735 microRNA 6735 ncRNA 13-PTNLD9-TUMOR_peak_48962 chr7 127849963 127850065 + 6.75884 NA Intergenic Intergenic 2089 NR_029596 406917 NR_029596 miRBase:MI0000252 MIR129-1 MIR-129b|MIRN129-1 microRNA 129-1 ncRNA 13-PTNLD9-TUMOR_peak_15705 chr14 50433308 50433430 + 6.75884 NA TTS (NR_106724) TTS (NR_106724) 252 NR_106724 102464828 NR_106724 MIR6076 hsa-mir-6076 microRNA 6076 ncRNA 13-PTNLD9-TUMOR_peak_46402 chr6 157801092 157801193 + 6.75884 NA Intergenic CpG -1415 NM_153746 79683 Hs.596214 NM_024630 HPRD:15711 ZDHHC14 NEW1CP zinc finger, DHHC-type containing 14 protein-coding 13-PTNLD9-TUMOR_peak_27420 chr2 85637541 85637668 + 6.75832 NA 5' UTR (NM_001747, exon 1 of 10) 5' UTR (NM_001747, exon 1 of 10) 216 NM_001256140 822 Hs.516155 NM_001747 HPRD:01088 CAPG AFCP|HEL-S-66|MCP capping protein (actin filament), gelsolin-like protein-coding 13-PTNLD9-TUMOR_peak_28001 chr2 110745164 110745317 + 6.75832 NA non-coding (NR_046111, exon 2 of 3) non-coding (NR_046111, exon 2 of 3) 683 NR_046112 440894 Hs.516403 NR_046110 ENSG00000204588 LINC01123 - long intergenic non-protein coding RNA 1123 ncRNA 13-PTNLD9-TUMOR_peak_4936 chr1 201243825 201244007 + 6.75832 NA Intergenic Intergenic -8664 NM_001005337 5317 Hs.497350 NM_000299 HPRD:03579 PKP1 B6P plakophilin 1 protein-coding 13-PTNLD9-TUMOR_peak_46800 chr7 5731959 5732065 + 6.75434 NA intron (NM_207111, intron 13 of 16) intron (NM_207111, intron 13 of 16) -11920 NR_046834 100874342 Hs.665728 NR_046834 RNF216-IT1 - RNF216 intronic transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_5646 chr1 226594380 226594475 + 6.75434 NA intron (NM_001618, intron 1 of 22) intron (NM_001618, intron 1 of 22) 1374 NM_001618 142 Hs.177766 NM_001618 HPRD:01435 PARP1 ADPRT|ADPRT 1|ADPRT1|ARTD1|PARP|PARP-1|PPOL|pADPRT-1 poly (ADP-ribose) polymerase 1 protein-coding 13-PTNLD9-TUMOR_peak_48403 chr7 97569504 97569598 + 6.75434 NA Intergenic Intergenic 32087 NR_002822 389538 Hs.655977 NR_002822 MGC72080 - MGC72080 pseudogene pseudo 13-PTNLD9-TUMOR_peak_11125 chr11 107729921 107730030 + 6.75434 NA promoter-TSS (NM_017515) promoter-TSS (NM_017515) -61 NM_017515 54733 Hs.524014 NM_017515 HPRD:15377 SLC35F2 HSNOV1 solute carrier family 35, member F2 protein-coding 13-PTNLD9-TUMOR_peak_12077 chr12 8394769 8394863 + 6.75103 NA intron (NR_120454, intron 2 of 2) intron (NR_120454, intron 2 of 2) 726 NR_024254 653113 Hs.661749 NR_024254 FAM86FP - family with sequence similarity 86, member A pseudogene pseudo 13-PTNLD9-TUMOR_peak_19920 chr16 84027723 84027818 + 6.74996 NA intron (NM_019065, intron 6 of 12) MIRb|SINE|MIR 25533 NM_019065 54550 Hs.140950 NM_019065 HPRD:13263 NECAB2 EFCBP2 N-terminal EF-hand calcium binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_32438 chr21 44041436 44041594 + 6.74996 NA Intergenic MER72|LTR|ERV1 -32347 NM_001001571 5152 Hs.473927 NM_002606 HPRD:09115 PDE9A HSPDE9A2 phosphodiesterase 9A protein-coding 13-PTNLD9-TUMOR_peak_32113 chr21 32716480 32716655 + 6.74996 NA intron (NM_003253, intron 2 of 28) intron (NM_003253, intron 2 of 28) 214723 NM_003253 7074 Hs.517228 NM_003253 HPRD:02820 TIAM1 - T-cell lymphoma invasion and metastasis 1 protein-coding 13-PTNLD9-TUMOR_peak_4482 chr1 175464241 175464342 + 6.74996 NA intron (NM_003285, intron 2 of 22) L2c|LINE|L2 248461 NM_003285 7143 Hs.659864 NM_003285 HPRD:03589 TNR TN-R tenascin R protein-coding 13-PTNLD9-TUMOR_peak_33050 chr22 29168590 29168721 + 6.74996 NA promoter-TSS (NM_001284265) promoter-TSS (NM_001284265) -7 NM_001284264 150275 Hs.406460 NM_173510 HPRD:08167 CCDC117 dJ366L4.1 coiled-coil domain containing 117 protein-coding 13-PTNLD9-TUMOR_peak_24789 chr19 36360673 36360784 + 6.74996 NA intron (NM_001024807, intron 2 of 16) CpG-13540 1327 NM_005166 333 Hs.74565 NM_005166 HPRD:00102 APLP1 APLP amyloid beta (A4) precursor-like protein 1 protein-coding 13-PTNLD9-TUMOR_peak_26505 chr2 31456133 31456322 + 6.74996 NA promoter-TSS (NM_014600) promoter-TSS (NM_014600) -653 NM_014600 30845 Hs.368808 NM_014600 EHD3 PAST3 EH-domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_2876 chr1 113008752 113008971 + 6.74996 NA promoter-TSS (NM_004185) promoter-TSS (NM_004185) -302 NM_004185 7482 Hs.258575 NM_004185 WNT2B WNT13 wingless-type MMTV integration site family, member 2B protein-coding 13-PTNLD9-TUMOR_peak_28976 chr2 166350394 166350551 + 6.74996 NA intron (NM_001172173, intron 1 of 6) intron (NM_001172173, intron 1 of 6) 24315 NM_001172173 80034 Hs.470479 NM_024969 HPRD:18144 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine-serine-rich nuclear protein 3 protein-coding 13-PTNLD9-TUMOR_peak_8767 chr11 1051198 1051319 + 6.74996 NA Intergenic Intergenic -14552 NM_005961 4588 Hs.528432 NM_005961 ENSG00000184956 MUC6 MUC-6 mucin 6, oligomeric mucus/gel-forming protein-coding 13-PTNLD9-TUMOR_peak_37860 chr4 7975218 7975456 + 6.74296 NA intron (NM_001130085, intron 17 of 17) L2c|LINE|L2 -33684 NM_001134647 60312 Hs.529369 NM_021638 HPRD:09747 AFAP1 AFAP|AFAP-110|AFAP110 actin filament associated protein 1 protein-coding 13-PTNLD9-TUMOR_peak_24679 chr19 33545580 33545779 + 6.73937 NA intron (NM_033103, intron 1 of 14) intron (NM_033103, intron 1 of 14) 10145 NM_033103 85415 Hs.466435 NM_033103 HPRD:10192 RHPN2 P76RBE|RHOBP rhophilin, Rho GTPase binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_47983 chr7 74641981 74642095 + 6.73937 NA intron (NR_002206, intron 1 of 23).2 MLT1F|LTR|ERVL-MaLR 11421 NR_003580 100093631 Hs.488624 NR_003580 LOC100093631 - general transcription factor II, i, pseudogene pseudo 13-PTNLD9-TUMOR_peak_47986 chr7 74856191 74856319 + 6.73937 NA intron (NM_001145064, intron 1 of 8) MLT1F|LTR|ERVL-MaLR 11254 NM_001145064 729438 Hs.647031 NM_001145064 GATSL2 GATSL1 GATS protein-like 2 protein-coding 13-PTNLD9-TUMOR_peak_39674 chr4 154004707 154004801 + 6.73548 NA Intergenic Intergenic -69516 NM_001130067 23321 Hs.435711 NM_015271 HPRD:10279 TRIM2 CMT2R|RNF86 tripartite motif containing 2 protein-coding 13-PTNLD9-TUMOR_peak_33220 chr22 37712987 37713122 + 6.73548 NA Intergenic Intergenic 34559 NM_013385 27128 Hs.170944 NM_013385 HPRD:07354 CYTH4 CYT4|DJ63G5.1|PSCD4 cytohesin 4 protein-coding 13-PTNLD9-TUMOR_peak_14113 chr12 122235009 122235199 + 6.73548 NA intron (NR_002809, intron 5 of 6) intron (NR_002809, intron 5 of 6) -3510 NM_019034 54509 Hs.644504 NM_019034 HPRD:15246 RHOF ARHF|RIF ras homolog family member F (in filopodia) protein-coding 13-PTNLD9-TUMOR_peak_44160 chr6 24990846 24990966 + 6.73548 NA intron (NM_001286446, intron 1 of 13) intron (NM_001286446, intron 1 of 13) 51490 NM_001286446 9750 Hs.559459 NM_014722 HPRD:12881 FAM65B C6orf32|DIFF40|DIFF48|MYONAP|PL48 family with sequence similarity 65, member B protein-coding 13-PTNLD9-TUMOR_peak_2090 chr1 65658937 65659133 + 6.73548 NA intron (NM_001005353, intron 3 of 5) MSTD-int|LTR|ERVL-MaLR 45185 NM_013410 205 Hs.10862 NM_013410 HPRD:00048 AK4 AK 4|AK3|AK3L1|AK3L2 adenylate kinase 4 protein-coding 13-PTNLD9-TUMOR_peak_55812 chrX 48345735 48346109 + 6.73548 NA Intergenic Intergenic 11513 NM_177439 24140 Hs.23170 NM_012280 HPRD:06568 FTSJ1 CDLIV|MRX44|MRX9|SPB1|TRMT7 FtsJ RNA methyltransferase homolog 1 (E. coli) protein-coding 13-PTNLD9-TUMOR_peak_13986 chr12 118291573 118291688 + 6.73548 NA intron (NM_173598, intron 3 of 19) intron (NM_173598, intron 3 of 19) 114398 NM_173598 283455 Hs.375836 NM_173598 HPRD:13952 KSR2 - kinase suppressor of ras 2 protein-coding 13-PTNLD9-TUMOR_peak_23165 chr18 47645882 47645985 + 6.73548 NA intron (NM_001080467, intron 1 of 39) intron (NM_001080467, intron 1 of 39) 7000 NR_036204 100422865 NR_036204 MIR4320 - microRNA 4320 ncRNA 13-PTNLD9-TUMOR_peak_29318 chr2 188824715 188824821 + 6.73548 NA Intergenic LOR1a|LTR|ERV1 -331628 NM_001252669 51454 Hs.470887 NM_016315 GULP1 CED-6|CED6|GULP GULP, engulfment adaptor PTB domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_18510 chr16 11198830 11199060 + 6.73548 NA intron (NM_015226, intron 18 of 22) intron (NM_015226, intron 18 of 22) 151094 NM_003745 8651 Hs.50640 NM_003745 HPRD:04669 SOCS1 CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP3 suppressor of cytokine signaling 1 protein-coding 13-PTNLD9-TUMOR_peak_8836 chr11 2966718 2966832 + 6.73548 NA 3' UTR (NM_005969, exon 16 of 16) 3' UTR (NM_005969, exon 16 of 16) -16125 NM_003311 7262 Hs.154036 NM_003311 HPRD:03679 PHLDA2 BRW1C|BWR1C|HLDA2|IPL|TSSC3 pleckstrin homology-like domain, family A, member 2 protein-coding 13-PTNLD9-TUMOR_peak_32149 chr21 33941757 33942400 + 6.73548 NA Intergenic CpG 15767 NM_144659 140290 Hs.728804 NM_018277 TCP10L C21orf77|TCP10A-2 t-complex 10-like protein-coding 13-PTNLD9-TUMOR_peak_41664 chr5 104749304 104749609 + 6.73548 NA Intergenic L1PB1|LINE|L1 314281 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_16281 chr14 75535956 75536061 + 6.73548 NA promoter-TSS (NM_001042430) promoter-TSS (NM_001042430) -272 NM_024643 79696 Hs.48642 NM_024643 HPRD:16607 ZC2HC1C C14orf140|FAM164C zinc finger, C2HC-type containing 1C protein-coding 13-PTNLD9-TUMOR_peak_53858 chr9 89020886 89020999 + 6.73548 NA Intergenic Intergenic -51540 NM_001185059 79670 Hs.597057 NM_024617 HPRD:11697 ZCCHC6 PAPD6|TUT7 zinc finger, CCHC domain containing 6 protein-coding 13-PTNLD9-TUMOR_peak_6265 chr10 1332004 1332146 + 6.73548 NA intron (NM_018702, intron 3 of 9) intron (NM_018702, intron 3 of 9) 126367 NR_015376 399706 Hs.721191 NM_001010910 HPRD:17990 LINC00200 C10orf139|NCRNA00200 long intergenic non-protein coding RNA 200 ncRNA 13-PTNLD9-TUMOR_peak_20948 chr17 36665750 36665879 + 6.73548 NA intron (NM_001199417, intron 23 of 23) intron (NM_001199417, intron 23 of 23) 81094 NM_001199417 57636 Hs.374446 NM_020876 ENSG00000225485 ARHGAP23 - Rho GTPase activating protein 23 protein-coding 13-PTNLD9-TUMOR_peak_55207 chrUn_gl000213 126153 126259 + 6.73548 NA intron (NM_001257362, intron 6 of 10) MER1A|DNA|hAT-Charlie 13133 NM_001257362 100288966 Hs.442712 NM_001257362 LOC100288966 - POTE ankyrin domain family member D-like protein-coding 13-PTNLD9-TUMOR_peak_35181 chr3 99594994 99595089 + 6.73548 NA promoter-TSS (NM_014890) promoter-TSS (NM_014890) 6 NM_014890 11259 Hs.104672 NM_014890 HPRD:16832 FILIP1L DOC-1|DOC1|GIP130|GIP90 filamin A interacting protein 1-like protein-coding 13-PTNLD9-TUMOR_peak_20456 chr17 8977494 8977694 + 6.73548 NA intron (NM_004822, intron 2 of 6) intron (NM_004822, intron 2 of 6) 52735 NM_004822 9423 Hs.660885 NM_004822 HPRD:03368 NTN1 NTN1L netrin 1 protein-coding 13-PTNLD9-TUMOR_peak_12 chr1 425158 425310 + 6.73524 NA Intergenic Intergenic 57575 NM_001005277 81399 Hs.632360 NM_001005277 HPRD:14969 OR4F16 OR1-1|OR7-21 olfactory receptor, family 4, subfamily F, member 16 protein-coding 13-PTNLD9-TUMOR_peak_10016 chr11 61522121 61522262 + 6.73412 NA promoter-TSS (NM_013279) promoter-TSS (NM_013279) -670 NM_013279 745 Hs.473109 NM_013279 HPRD:12213 MYRF C11orf9|MRF|Ndt80|pqn-47 myelin regulatory factor protein-coding 13-PTNLD9-TUMOR_peak_53404 chr9 66546804 66546910 + 6.73412 NA intron (NR_122076, intron 1 of 5) intron (NR_122076, intron 1 of 5) 7054 NR_122077 403323 Hs.646340 NM_203449 LOC403323 - uncharacterized LOC403323 ncRNA 13-PTNLD9-TUMOR_peak_37945 chr4 9497267 9497407 + 6.73412 NA Intergenic Intergenic 51077 NM_001040448 644414 Hs.590200 NM_001040448 ENSG00000186146 DEFB131 DEFB-31 defensin, beta 131 protein-coding 13-PTNLD9-TUMOR_peak_33816 chr3 12909964 12910122 + 6.73412 NA Intergenic LTR13_|LTR|ERVK -26962 NM_001007073 6161 Hs.265174 NM_000994 HPRD:17995 RPL32 L32 ribosomal protein L32 protein-coding 13-PTNLD9-TUMOR_peak_6383 chr10 5992464 5992709 + 6.73412 NA Intergenic MLT1G1|LTR|ERVL-MaLR 26988 NM_002189 3601 Hs.445124 NM_002189 HPRD:03045 IL15RA CD215 interleukin 15 receptor, alpha protein-coding 13-PTNLD9-TUMOR_peak_13907 chr12 113591108 113591307 + 6.73009 NA exon (NM_001144872, exon 4 of 8) exon (NM_001144872, exon 4 of 8) 3544 NM_001144872 387885 Hs.486856 NM_001144872 ENSG00000186710 CCDC42B MIA2 coiled-coil domain containing 42B protein-coding 13-PTNLD9-TUMOR_peak_9297 chr11 20134648 20134877 + 6.73009 NA intron (NM_001111019, intron 26 of 27) MIRb|SINE|MIR 47108 NM_001029865 120237 Hs.558604 NM_001029865 HPRD:18721 DBX1 - developing brain homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_31984 chr21 18984404 18984566 + 6.73009 NA intron (NM_001130914, intron 1 of 5) intron (NM_001130914, intron 1 of 5) 783 NM_006806 10950 Hs.473420 NM_006806 HPRD:10415 BTG3 ANA|TOB5|TOB55|TOFA BTG family, member 3 protein-coding 13-PTNLD9-TUMOR_peak_35838 chr3 128879878 128879977 + 6.73009 NA 5' UTR (NM_001199469, exon 1 of 12) 5' UTR (NM_001199469, exon 1 of 12) 146 NM_001204890 100534599 Hs.512661 NM_001204890 ENSG00000240682 ISY1-RAB43 - ISY1-RAB43 readthrough protein-coding 13-PTNLD9-TUMOR_peak_54820 chr9 130565313 130565485 + 6.72982 NA promoter-TSS (NM_001018078) promoter-TSS (NM_001018078) -61 NM_001018078 2356 Hs.335084 NM_004957 HPRD:00642 FPGS - folylpolyglutamate synthase protein-coding 13-PTNLD9-TUMOR_peak_124 chr1 2313246 2313549 + 6.72982 NA intron (NR_125361, intron 5 of 6) intron (NR_125361, intron 5 of 6) 9793 NR_125361 79906 Hs.642701 NM_024848 HPRD:07843 MORN1 - MORN repeat containing 1 protein-coding 13-PTNLD9-TUMOR_peak_5920 chr1 234793959 234794172 + 6.72982 NA Intergenic Intergenic 29008 NR_033927 100302691 Hs.209162 NR_033927 ENSG00000224939 LINC00184 HANC|NCRNA00184 long intergenic non-protein coding RNA 184 ncRNA 13-PTNLD9-TUMOR_peak_3339 chr1 145909931 145910040 + 6.72982 NA intron (NR_104217, intron 2 of 17).2 L1ME1|LINE|L1 35492 NR_111936 100034743 Hs.696575 NR_003377 ENSG00000215860 PDZK1P2 OTTHUMT00000038524|PDZK1P1 PDZ domain containing 1 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_25130 chr19 45578810 45578927 + 6.72982 NA intron (NM_145288, intron 2 of 2) intron (NM_145288, intron 2 of 2) 820 NM_145288 162979 Hs.192237 NM_145288 HPRD:15782 ZNF296 ZFP296|ZNF342 zinc finger protein 296 protein-coding 13-PTNLD9-TUMOR_peak_43016 chr5 171845349 171845589 + 6.72982 NA intron (NM_001017995, intron 2 of 12) intron (NM_001017995, intron 2 of 12) 36058 NM_001017995 285590 Hs.285666 NM_001017995 HPRD:18591 SH3PXD2B FAD49|FTHS|HOFI|KIAA1295|TKS4|TSK4 SH3 and PX domains 2B protein-coding 13-PTNLD9-TUMOR_peak_22312 chr17 80163050 80163153 + 6.72982 NA intron (NM_198082, intron 1 of 16) intron (NM_198082, intron 1 of 16) 7588 NM_198082 284001 Hs.631724 NM_152675 HPRD:08041 CCDC57 - coiled-coil domain containing 57 protein-coding 13-PTNLD9-TUMOR_peak_36093 chr3 138153325 138153547 + 6.72982 NA promoter-TSS (NM_031913) promoter-TSS (NM_031913) 21 NM_031913 83850 Hs.477711 NM_031913 HPRD:13054 ESYT3 CHR3SYT|E-Syt3|FAM62C extended synaptotagmin-like protein 3 protein-coding 13-PTNLD9-TUMOR_peak_18866 chr16 28202987 28203240 + 6.72982 NA intron (NM_015171, intron 1 of 23) intron (NM_015171, intron 1 of 23) 20126 NM_001270940 23214 Hs.460468 NM_015171 HPRD:10525 XPO6 EXP6|RANBP20 exportin 6 protein-coding 13-PTNLD9-TUMOR_peak_33226 chr22 37934899 37935024 + 6.72982 NA Intergenic Intergenic -19751 NM_014550 29775 Hs.57973 NM_014550 HPRD:06233 CARD10 BIMP1|CARMA3 caspase recruitment domain family, member 10 protein-coding 13-PTNLD9-TUMOR_peak_44321 chr6 27759081 27759183 + 6.72982 NA Intergenic Intergenic 16577 NM_003519 8340 Hs.137594 NM_003519 HPRD:11898 HIST1H2BL H2B/c|H2BFC|dJ97D16.4 histone cluster 1, H2bl protein-coding 13-PTNLD9-TUMOR_peak_34940 chr3 71566410 71566592 + 6.71932 NA intron (NM_001012505, intron 2 of 6) intron (NM_001012505, intron 2 of 6) 24739 NR_031697 100302112 NR_031697 miRBase:MI0006431 MIR1284 MIRN1284|hsa-mir-1284 microRNA 1284 ncRNA 13-PTNLD9-TUMOR_peak_6600 chr10 18045834 18046027 + 6.71932 NA intron (NM_001098844, intron 1 of 3).2 intron (NM_001098844, intron 1 of 3).2 4703 NM_001098844 653567 Hs.564139 NM_001013629 ENSG00000148483 TMEM236 FAM23A|FAM23B|bA162I21.2|bA16O1.2 transmembrane protein 236 protein-coding 13-PTNLD9-TUMOR_peak_12218 chr12 14361004 14361146 + 6.71932 NA Intergenic Intergenic -157491 NM_018179 55729 Hs.504856 NM_018179 HPRD:09811 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 13-PTNLD9-TUMOR_peak_3374 chr1 146966944 146967053 + 6.71932 NA intron (NR_038423, intron 3 of 3) intron (NR_038423, intron 3 of 3) 22701 NR_038423 100289211 Hs.323484 NR_038423 LINC00624 - long intergenic non-protein coding RNA 624 ncRNA 13-PTNLD9-TUMOR_peak_6426 chr10 7652741 7652991 + 6.71932 NA intron (NM_001001851, intron 7 of 11) intron (NM_001001851, intron 7 of 11) 8770 NM_032817 80760 Hs.498586 NM_030569 HPRD:07865 ITIH5 ITI-HC5 inter-alpha-trypsin inhibitor heavy chain family, member 5 protein-coding 13-PTNLD9-TUMOR_peak_17952 chr15 90233961 90234055 + 6.71932 NA promoter-TSS (NM_003847) promoter-TSS (NM_003847) 7 NM_003847 8800 Hs.31034 NM_003847 HPRD:04843 PEX11A PEX11-ALPHA|PMP28|hsPEX11p peroxisomal biogenesis factor 11 alpha protein-coding 13-PTNLD9-TUMOR_peak_18420 chr16 7647800 7647923 + 6.71932 NA intron (NM_145893, intron 6 of 13) intron (NM_145893, intron 6 of 13) 265110 NM_145893 54715 Hs.459842 NM_018723 HPRD:16091 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding protein, fox-1 homolog (C. elegans) 1 protein-coding 13-PTNLD9-TUMOR_peak_13564 chr12 98960747 98960842 + 6.71932 NA Intergenic Intergenic -26609 NM_002635 5250 Hs.290404 NM_002635 HPRD:02654 SLC25A3 PHC|PTP solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 protein-coding 13-PTNLD9-TUMOR_peak_45793 chr6 100016512 100016725 + 6.71932 NA promoter-TSS (NM_005190) promoter-TSS (NM_005190) 72 NM_005190 892 Hs.430646 NM_005190 HPRD:00456 CCNC CycC cyclin C protein-coding 13-PTNLD9-TUMOR_peak_48572 chr7 100787405 100787519 + 6.71932 NA Intergenic Intergenic -10224 NM_001283 1174 Hs.489365 NM_001283 HPRD:04635 AP1S1 AP19|CLAPS1|EKV3|MEDNIK|SIGMA1A|WUGSC:H_DJ0747G18.2 adaptor-related protein complex 1, sigma 1 subunit protein-coding 13-PTNLD9-TUMOR_peak_11539 chr11 125808994 125809183 + 6.71932 NA Intergenic Intergenic 34827 NM_013264 29118 Hs.420263 NM_013264 HPRD:06367 DDX25 GRTH DEAD (Asp-Glu-Ala-Asp) box helicase 25 protein-coding 13-PTNLD9-TUMOR_peak_2593 chr1 97003684 97003838 + 6.71932 NA Intergenic MLT1I|LTR|ERVL-MaLR -164080 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LOC101928241 - uncharacterized LOC101928241 ncRNA 13-PTNLD9-TUMOR_peak_21852 chr17 65832530 65832624 + 6.71932 NA intron (NM_182641, intron 1 of 27) intron (NM_182641, intron 1 of 27) 10797 NM_182641 2186 Hs.444200 NM_004459 HPRD:03490 BPTF FAC1|FALZ|NURF301 bromodomain PHD finger transcription factor protein-coding 13-PTNLD9-TUMOR_peak_45560 chr6 79880367 79880461 + 6.71932 NA Intergenic MLT1I|LTR|ERVL-MaLR -62977 NR_040671 100288198 Hs.586270 NR_040671 ENSG00000270362 HMGN3-AS1 - HMGN3 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_16074 chr14 68050893 68050987 + 6.71932 NA intron (NM_020715, intron 26 of 28) intron (NM_020715, intron 26 of 28) 16077 NM_004569 5283 Hs.553497 NM_004569 HPRD:02540 PIGH GPI-H phosphatidylinositol glycan anchor biosynthesis, class H protein-coding 13-PTNLD9-TUMOR_peak_10279 chr11 65894366 65894471 + 6.71932 NA intron (NM_018026, intron 1 of 23) intron (NM_018026, intron 1 of 23) 56594 NM_018026 55690 Hs.644326 NM_018026 HPRD:06320 PACS1 MRD17 phosphofurin acidic cluster sorting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_31499 chr20 50202614 50202737 + 6.71932 NA Intergenic Intergenic -23305 NM_001258294 4773 Hs.744148 NM_012340 HPRD:02730 NFATC2 NFAT1|NFATP nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 protein-coding 13-PTNLD9-TUMOR_peak_11880 chr12 4618185 4618281 + 6.71932 NA intron (NM_020374, intron 9 of 13) L1PA2|LINE|L1 29404 NM_020374 57102 Hs.302977 NM_020374 HPRD:12609 C12orf4 - chromosome 12 open reading frame 4 protein-coding 13-PTNLD9-TUMOR_peak_52288 chr8 140613224 140613423 + 6.71786 NA non-coding (NR_104210, exon 4 of 4) non-coding (NR_104210, exon 4 of 4) 101976 NR_104210 51305 Hs.493037 NM_001282534 HPRD:16167 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium channel, subfamily K, member 9 protein-coding 13-PTNLD9-TUMOR_peak_42274 chr5 139032033 139032255 + 6.71786 NA intron (NM_016463, intron 1 of 2) intron (NM_016463, intron 1 of 2) 3843 NM_016463 51523 Hs.744933 NM_016463 HPRD:13105 CXXC5 CF5|RINF|WID CXXC finger protein 5 protein-coding 13-PTNLD9-TUMOR_peak_52724 chr9 7799346 7799481 + 6.71786 NA intron (NM_033428, intron 1 of 1) CpG 386 NM_033428 90871 Hs.7517 NM_033428 HPRD:12939 TMEM261 C9orf123 transmembrane protein 261 protein-coding 13-PTNLD9-TUMOR_peak_11218 chr11 112046182 112046475 + 6.71786 NA promoter-TSS (NM_001256397) promoter-TSS (NM_001256397) 120 NM_001256398 83875 Hs.728325 NM_031938 HPRD:12522 BCO2 B-DIOX-II|BCDO2 beta-carotene oxygenase 2 protein-coding 13-PTNLD9-TUMOR_peak_12718 chr12 49628281 49628420 + 6.71786 NA Intergenic CpG -30515 NM_032704 84790 Hs.652390 NM_032704 HPRD:06747 TUBA1C TUBA6|bcm948 tubulin, alpha 1c protein-coding 13-PTNLD9-TUMOR_peak_16274 chr14 75348915 75349046 + 6.71786 NA intron (NR_045209, intron 1 of 13) CpG 386 NM_001244883 1743 Hs.525459 NM_001933 HPRD:00520 DLST DLTS dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex) protein-coding 13-PTNLD9-TUMOR_peak_15352 chr14 24423295 24423403 + 6.71786 NA promoter-TSS (NR_023921) promoter-TSS (NR_023921) 57 NR_023924 55449 Hs.569361 NM_018583 ENSG00000215256 DHRS4-AS1 AS1DHRS4|C14orf167 DHRS4 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_32737 chr22 19679392 19679590 + 6.71786 NA Intergenic Intergenic -22496 NM_002688 5413 Hs.728762 NM_002688 HPRD:04100 SEPT5 CDCREL|CDCREL-1|CDCREL1|H5|HCDCREL-1|PNUTL1 septin 5 protein-coding 13-PTNLD9-TUMOR_peak_9428 chr11 32421900 32422091 + 6.71786 NA intron (NM_001198552, intron 4 of 8) intron (NM_001198552, intron 4 of 8) 30368 NM_001198552 7490 Hs.591980 NM_000378 HPRD:06163 WT1 AWT1|EWS-WT1|GUD|NPHS4|WAGR|WIT-2|WT33 Wilms tumor 1 protein-coding 13-PTNLD9-TUMOR_peak_6219 chr1 249200326 249200598 + 6.71786 NA promoter-TSS (NM_170725) promoter-TSS (NM_170725) 20 NM_170725 267002 Hs.602037 NM_170725 PGBD2 - piggyBac transposable element derived 2 protein-coding 13-PTNLD9-TUMOR_peak_40341 chr5 11415969 11416128 + 6.71786 NA intron (NM_001288717, intron 3 of 20) MLT1J2|LTR|ERVL-MaLR 172981 NM_001288715 1501 Hs.314543 NM_001332 HPRD:09181 CTNND2 GT24|NPRAP catenin (cadherin-associated protein), delta 2 protein-coding 13-PTNLD9-TUMOR_peak_37358 chr3 194823413 194823659 + 6.71786 NA intron (NM_152531, intron 3 of 3) L1MA9|LINE|L1 8219 NR_104188 100874528 Hs.581659 NR_104188 XXYLT1-AS1 - XXYLT1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_6773 chr10 28791239 28791372 + 6.71786 NA Intergenic MLT1J|LTR|ERVL-MaLR 29978 NR_033805 220906 Hs.403253 NR_033805 ENSG00000254635 WAC-AS1 - WAC antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_29685 chr2 208489383 208489509 + 6.71724 NA intron (NM_001127395, intron 1 of 3) CpG 250 NM_145280 151194 Hs.664764 NM_145280 HPRD:14090 METTL21A FAM119A|HCA557b|HSPA-KMT methyltransferase like 21A protein-coding 13-PTNLD9-TUMOR_peak_23046 chr18 43732545 43732663 + 6.71724 NA Intergenic Intergenic -21384 NM_001008239 147339 Hs.116486 NM_145055 HPRD:12690 C18orf25 ARKL1|RNF111L1 chromosome 18 open reading frame 25 protein-coding 13-PTNLD9-TUMOR_peak_30846 chr20 33461991 33462085 + 6.71724 NA promoter-TSS (NM_001242393) promoter-TSS (NM_001242393) -728 NM_001242393 55902 Hs.517034 NM_018677 ENSG00000131069 ACSS2 ACAS2|ACECS|ACS|ACSA|dJ1161H23.1 acyl-CoA synthetase short-chain family member 2 protein-coding 13-PTNLD9-TUMOR_peak_48482 chr7 99684939 99685033 + 6.70788 NA Intergenic Intergenic -1597 NM_006833 10980 Hs.15591 NM_006833 HPRD:16735 COPS6 CSN6|MOV34-34KD COP9 signalosome subunit 6 protein-coding 13-PTNLD9-TUMOR_peak_37348 chr3 194591638 194591743 + 6.70788 NA Intergenic Intergenic 162540 NR_037891 100507391 Hs.590099 NR_037891 ENSG00000237222 LOC100507391 - uncharacterized LOC100507391 ncRNA 13-PTNLD9-TUMOR_peak_53676 chr9 78579059 78579212 + 6.70788 NA intron (NR_120409, intron 2 of 19) intron (NR_120409, intron 2 of 19) 73575 NM_001190482 5125 Hs.368542 NM_006200 HPRD:08985 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 13-PTNLD9-TUMOR_peak_18991 chr16 30363554 30363648 + 6.70623 NA 3' UTR (NM_006110, exon 7 of 7) 3' UTR (NM_006110, exon 7 of 7) 2654 NM_001243646 10421 Hs.202677 NM_006110 HPRD:05127 CD2BP2 FWP010|LIN1|PPP1R59|Snu40|U5-52K CD2 (cytoplasmic tail) binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_22315 chr17 80171335 80171630 + 6.70623 NA promoter-TSS (NM_198082) promoter-TSS (NM_198082) -793 NM_198082 284001 Hs.631724 NM_152675 HPRD:08041 CCDC57 - coiled-coil domain containing 57 protein-coding 13-PTNLD9-TUMOR_peak_18164 chr16 770983 771217 + 6.70623 NA promoter-TSS (NM_023933) promoter-TSS (NM_023933) -42 NM_023933 65990 Hs.166244 NM_023933 HPRD:14500 FAM173A C16orf24 family with sequence similarity 173, member A protein-coding 13-PTNLD9-TUMOR_peak_48923 chr7 126893369 126893608 + 6.70623 NA Intergenic CpG-24841 -1060 NM_001127323 2918 Hs.449625 NM_000845 HPRD:03071 GRM8 GLUR8|GPRC1H|MGLUR8|mGlu8 glutamate receptor, metabotropic 8 protein-coding 13-PTNLD9-TUMOR_peak_30604 chr20 23031438 23031734 + 6.70477 NA Intergenic CpG -1285 NM_000361 7056 Hs.2030 NM_000361 HPRD:01764 THBD AHUS6|BDCA3|CD141|THPH12|THRM|TM thrombomodulin protein-coding 13-PTNLD9-TUMOR_peak_33932 chr3 15358052 15358313 + 6.70086 NA intron (NM_001018009, intron 2 of 8) U13|snRNA|snRNA 15954 NM_004844 9467 Hs.257761 NM_004844 HPRD:12030 SH3BP5 SAB|SH3BP-5 SH3-domain binding protein 5 (BTK-associated) protein-coding 13-PTNLD9-TUMOR_peak_9473 chr11 33793921 33794080 + 6.70086 NA intron (NM_012175, intron 1 of 10) L2a|LINE|L2 2071 NM_012175 26273 Hs.406787 NM_012175 HPRD:16433 FBXO3 FBA|FBX3 F-box protein 3 protein-coding 13-PTNLD9-TUMOR_peak_12772 chr12 51612101 51612247 + 6.70086 NA promoter-TSS (NR_026893) promoter-TSS (NR_026893) -697 NR_026893 5463 Hs.555886 NM_002702 POU6F1 BRN5|MPOU|TCFB1 POU class 6 homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_28714 chr2 151335683 151335854 + 6.70086 NA intron (NM_005168, intron 3 of 5) intron (NM_005168, intron 3 of 5) 8441 NM_005168 390 Hs.6838 NM_005168 HPRD:04233 RND3 ARHE|Rho8|RhoE|memB Rho family GTPase 3 protein-coding 13-PTNLD9-TUMOR_peak_3999 chr1 157938893 157939012 + 6.70086 NA Intergenic Intergenic -24111 NM_001286349 55243 Hs.272234 NM_018240 HPRD:06306 KIRREL NEPH1 kin of IRRE like (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_37895 chr4 8505284 8505407 + 6.70086 NA Intergenic Intergenic 62813 NM_152544 152992 Hs.566191 NM_024950 HPRD:08760 TRMT44 C4orf23|METTL19|TRM44 tRNA methyltransferase 44 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_2942 chr1 115300085 115300280 + 6.70086 NA intron (NM_001007553, intron 1 of 19) intron (NM_001007553, intron 1 of 19) 489 NM_001242892 7812 Hs.69855 NM_007158 HPRD:15949 CSDE1 D1S155E|UNR cold shock domain containing E1, RNA-binding protein-coding 13-PTNLD9-TUMOR_peak_23794 chr19 6863565 6863740 + 6.70086 NA Intergenic Intergenic -23908 NM_001256254 2015 Hs.2375 NM_001974 HPRD:02733 EMR1 TM7LN3 egf-like module containing, mucin-like, hormone receptor-like 1 protein-coding 13-PTNLD9-TUMOR_peak_1975 chr1 60280697 60280911 + 6.70086 NA exon (NM_015888, exon 1 of 22) exon (NM_015888, exon 1 of 22) 271 NM_015888 51361 Hs.378836 NM_015888 HPRD:07428 HOOK1 HK1 hook microtubule-tethering protein 1 protein-coding 13-PTNLD9-TUMOR_peak_14214 chr12 124965131 124965336 + 6.70086 NA intron (NM_001077261, intron 5 of 47) intron (NM_001077261, intron 5 of 47) 86777 NM_006312 9612 Hs.137510 NM_006312 HPRD:02910 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 13-PTNLD9-TUMOR_peak_4935 chr1 201237974 201238109 + 6.70086 NA Intergenic Intergenic -14539 NM_001005337 5317 Hs.497350 NM_000299 HPRD:03579 PKP1 B6P plakophilin 1 protein-coding 13-PTNLD9-TUMOR_peak_8141 chr10 100174866 100175073 + 6.69991 NA promoter-TSS (NM_032709) promoter-TSS (NM_032709) 9 NM_032709 84795 Hs.238303 NM_032709 HPRD:12572 PYROXD2 C10orf33|FP3420 pyridine nucleotide-disulphide oxidoreductase domain 2 protein-coding 13-PTNLD9-TUMOR_peak_28344 chr2 125119340 125119505 + 6.69991 NA intron (NM_130773, intron 3 of 23) L1PA2|LINE|L1 336558 NM_130773 129684 Hs.660653 NM_130773 HPRD:16732 CNTNAP5 caspr5 contactin associated protein-like 5 protein-coding 13-PTNLD9-TUMOR_peak_38881 chr4 90044778 90044879 + 6.69991 NA Intergenic Intergenic 10860 NM_145715 166815 Hs.58924 NM_145715 HPRD:18186 TIGD2 HEL106 tigger transposable element derived 2 protein-coding 13-PTNLD9-TUMOR_peak_33729 chr3 10240840 10241028 + 6.69991 NA intron (NM_001570, intron 2 of 12) intron (NM_001570, intron 2 of 12) 34371 NM_001570 3656 Hs.449207 NM_001570 HPRD:04491 IRAK2 IRAK-2 interleukin-1 receptor-associated kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_26763 chr2 45179451 45179548 + 6.69991 NA Intergenic CpG 10462 NM_005413 6496 Hs.567336 NM_005413 HPRD:04756 SIX3 HPE2 SIX homeobox 3 protein-coding 13-PTNLD9-TUMOR_peak_22089 chr17 74835884 74836042 + 6.69991 NA Intergenic MER3|DNA|hAT-Charlie -28835 NM_001199172 146664 Hs.144531 NM_144677 HPRD:14392 MGAT5B GnT-IX|GnT-VB mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B protein-coding 13-PTNLD9-TUMOR_peak_35472 chr3 118510472 118510602 + 6.69991 NA Intergenic Intergenic -151386 NR_046230 100506765 Hs.660823 NR_046230 ENSG00000239877 IGSF11-AS1 - IGSF11 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_36292 chr3 146671463 146671761 + 6.69991 NA Intergenic Intergenic -347609 NM_001085420 389158 Hs.254692 NM_001085420 ENSG00000231213 PLSCR5 - phospholipid scramblase family, member 5 protein-coding 13-PTNLD9-TUMOR_peak_13394 chr12 79258354 79258523 + 6.69991 NA promoter-TSS (NM_001291901) promoter-TSS (NM_001291901) -11 NM_005639 6857 Hs.310545 NM_005639 HPRD:01710 SYT1 P65|SVP65|SYT synaptotagmin I protein-coding 13-PTNLD9-TUMOR_peak_31295 chr20 46415386 46415480 + 6.69991 NA promoter-TSS (NM_001161841) promoter-TSS (NM_001161841) -73 NM_198596 55959 Hs.162016 NM_018837 HPRD:18130 SULF2 HSULF-2 sulfatase 2 protein-coding 13-PTNLD9-TUMOR_peak_39178 chr4 119946721 119946912 + 6.69991 NA intron (NM_001286755, intron 2 of 2) intron (NM_001286755, intron 2 of 2) -110123 NM_016599 51778 Hs.732122 NM_016599 HPRD:05724 MYOZ2 C4orf5|CMH16|CS-1 myozenin 2 protein-coding 13-PTNLD9-TUMOR_peak_41095 chr5 66486839 66486933 + 6.69991 NA intron (NM_005582, intron 1 of 2) intron (NM_005582, intron 1 of 2) 5731 NM_005582 4064 Hs.87205 NM_005582 HPRD:03749 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 13-PTNLD9-TUMOR_peak_35684 chr3 125343419 125343513 + 6.69991 NA Intergenic Intergenic -29085 NM_022776 114885 Hs.477440 NM_022776 HPRD:09481 OSBPL11 ORP-11|ORP11|OSBP12|TCCCIA00292 oxysterol binding protein-like 11 protein-coding 13-PTNLD9-TUMOR_peak_262 chr1 8138453 8138723 + 6.69991 NA Intergenic Intergenic -52195 NM_018948 54206 Hs.605445 NM_018948 HPRD:09218 ERRFI1 GENE-33|MIG-6|MIG6|RALT ERBB receptor feedback inhibitor 1 protein-coding 13-PTNLD9-TUMOR_peak_27889 chr2 103157408 103157550 + 6.69991 NA Intergenic Intergenic 67717 NM_001011552 389015 Hs.447686 NM_001011552 HPRD:15973 SLC9A4 NHE4 solute carrier family 9, subfamily A (NHE4, cation proton antiporter 4), member 4 protein-coding 13-PTNLD9-TUMOR_peak_54073 chr9 97682276 97682384 + 6.69668 NA intron (NM_032823, intron 5 of 14) AluSp|SINE|Alu 110086 NR_031755 100313780 NR_031755 MIR2278 - microRNA 2278 ncRNA 13-PTNLD9-TUMOR_peak_5967 chr1 235566462 235566573 + 6.69590 NA intron (NM_001079515, intron 3 of 16) intron (NM_001079515, intron 3 of 16) 35842 NM_001079515 6905 Hs.744998 NM_003193 HPRD:05381 TBCE HRD|KCS|KCS1|pac2 tubulin folding cofactor E protein-coding 13-PTNLD9-TUMOR_peak_43368 chr5 180851712 180851864 + 6.68702 NA Intergenic Intergenic 57500 NM_001005221 729759 Hs.632360 NM_001005221 HPRD:14971 OR4F29 OR7-21 olfactory receptor, family 4, subfamily F, member 29 protein-coding 13-PTNLD9-TUMOR_peak_20967 chr17 37310008 37310153 + 6.68574 NA Intergenic Intergenic -2178 NM_020405 57125 Hs.125036 NM_020405 HPRD:08439 PLXDC1 TEM3|TEM7 plexin domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_35192 chr3 100210960 100211091 + 6.68574 NA promoter-TSS (NM_018004) promoter-TSS (NM_018004) -438 NM_018004 55076 Hs.658956 NM_018004 HPRD:07647 TMEM45A DERP7 transmembrane protein 45A protein-coding 13-PTNLD9-TUMOR_peak_47437 chr7 47599030 47599124 + 6.68574 NA intron (NM_022748, intron 1 of 30) intron (NM_022748, intron 1 of 30) 22665 NM_022748 64759 Hs.520814 NM_022748 ENSG00000136205 TNS3 TEM6|TENS1 tensin 3 protein-coding 13-PTNLD9-TUMOR_peak_33823 chr3 13025826 13025920 + 6.68574 NA intron (NM_001134382, intron 1 of 14) MER91A|DNA|hAT-Tip100 -16675 NM_014869 9922 Hs.475506 NM_014869 HPRD:11052 IQSEC1 ARF-GEP100|ARFGEP100|BRAG2|GEP100 IQ motif and Sec7 domain 1 protein-coding 13-PTNLD9-TUMOR_peak_33076 chr22 30197259 30197357 + 6.68574 NA intron (NM_001242906, intron 13 of 18) L2|LINE|L2 33950 NM_001003684 29796 Hs.284292 NM_013387 HPRD:13691 UQCR10 HSPC051|HSPC151|QCR9|UCCR7.2|UCRC ubiquinol-cytochrome c reductase, complex III subunit X protein-coding 13-PTNLD9-TUMOR_peak_28886 chr2 161085204 161085298 + 6.68574 NA Intergenic Intergenic -28427 NM_001282388 3694 Hs.470399 NM_000888 HPRD:00947 ITGB6 - integrin, beta 6 protein-coding 13-PTNLD9-TUMOR_peak_38429 chr4 54930568 54930904 + 6.68574 NA promoter-TSS (NM_012110) promoter-TSS (NM_012110) 79 NM_012110 26511 Hs.335393 NM_012110 HPRD:10373 CHIC2 BTL cysteine-rich hydrophobic domain 2 protein-coding 13-PTNLD9-TUMOR_peak_24759 chr19 35843682 35843794 + 6.68574 NA TTS (NM_005303) TTS (NM_005303) 1293 NM_005303 2864 Hs.248127 NM_005303 HPRD:04822 FFAR1 FFA1R|GPCR40|GPR40 free fatty acid receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_39200 chr4 121177296 121177461 + 6.68574 NA Intergenic L1PA2|LINE|L1 -189365 NM_002358 4085 Hs.591697 NM_002358 MAD2L1 HSMAD2|MAD2 MAD2 mitotic arrest deficient-like 1 (yeast) protein-coding 13-PTNLD9-TUMOR_peak_39366 chr4 134949222 134949413 + 6.68574 NA Intergenic MER5A|DNA|hAT-Charlie 173586 NM_001114734 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein, cytoplasmic 4-like protein-coding 13-PTNLD9-TUMOR_peak_45018 chr6 42109914 42110079 + 6.68574 NA intron (NM_001164446, intron 1 of 4) CpG 719 NM_001164446 647024 Hs.444277 NM_001164446 ENSG00000188112 C6orf132 bA7K24.2 chromosome 6 open reading frame 132 protein-coding 13-PTNLD9-TUMOR_peak_24760 chr19 35927704 35927831 + 6.68574 NA Intergenic Intergenic -12850 NM_005306 2867 Hs.248056 NM_005306 HPRD:04824 FFAR2 FFA2R|GPR43 free fatty acid receptor 2 protein-coding 13-PTNLD9-TUMOR_peak_39134 chr4 115519442 115519551 + 6.68574 NA promoter-TSS (NM_001128174) promoter-TSS (NM_001128174) -115 NM_001128174 7368 Hs.144197 NM_003360 HPRD:03186 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 13-PTNLD9-TUMOR_peak_50260 chr8 21987273 21987399 + 6.68240 NA intron (NM_018411, intron 1 of 17) intron (NM_018411, intron 1 of 17) 1229 NM_018411 55806 Hs.272367 NM_005144 HPRD:03808 HR ALUNC|AU|HSA277165|HYPT4|MUHH|MUHH1 hair growth associated protein-coding 13-PTNLD9-TUMOR_peak_12623 chr12 45626794 45627064 + 6.68212 NA intron (NM_001142679, intron 1 of 19) intron (NM_001142679, intron 1 of 19) -17140 NR_037144 51054 Hs.233495 NM_015899 HPRD:15143 PLEKHA8P1 PLEKHA9 pleckstrin homology domain containing, family A member 8 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_2507 chr1 94147304 94147591 + 6.68212 NA promoter-TSS (NM_003567) promoter-TSS (NM_003567) -53 NM_003567 8412 Hs.36958 NM_003567 HPRD:05268 BCAR3 NSP2|SH2D3B breast cancer anti-estrogen resistance 3 protein-coding 13-PTNLD9-TUMOR_peak_23337 chr18 57572100 57572201 + 6.68212 NA TTS (NM_021127) TTS (NM_021127) 4958 NM_021127 5366 Hs.96 NM_021127 HPRD:12002 PMAIP1 APR|NOXA phorbol-12-myristate-13-acetate-induced protein 1 protein-coding 13-PTNLD9-TUMOR_peak_7961 chr10 89622103 89622205 + 6.68212 NA exon (NM_001126049, exon 1 of 1) exon (NM_001126049, exon 1 of 1) 1040 NM_001126049 100144748 Hs.559820 NM_001126049 ENSG00000227268 KLLN CWS4|KILLIN killin, p53-regulated DNA replication inhibitor protein-coding 13-PTNLD9-TUMOR_peak_12450 chr12 31885940 31886123 + 6.68212 NA Intergenic LTR33|LTR|ERVL -3923 NM_001278412 196394 Hs.585084 NM_001113402 HPRD:14115 AMN1 - antagonist of mitotic exit network 1 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_26768 chr2 45346263 45346357 + 6.67868 NA Intergenic MER119|DNA|hAT-Charlie -109768 NM_016932 10736 Hs.101937 NM_016932 HPRD:05408 SIX2 - SIX homeobox 2 protein-coding 13-PTNLD9-TUMOR_peak_35465 chr3 117123177 117123284 + 6.67868 NA Intergenic Intergenic 482952 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 13-PTNLD9-TUMOR_peak_4359 chr1 169480989 169481194 + 6.67868 NA TTS (NM_000130) TTS (NM_000130) -25883 NM_006996 10560 Hs.30246 NM_006996 HPRD:04897 SLC19A2 TC1|THMD1|THT1|THTR1|TRMA solute carrier family 19 (thiamine transporter), member 2 protein-coding 13-PTNLD9-TUMOR_peak_46076 chr6 133749485 133749770 + 6.67868 NA intron (NM_001301013, intron 3 of 19) MLT1L|LTR|ERVL-MaLR 186990 NM_001301013 2070 Hs.596680 NM_004100 HPRD:04648 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 13-PTNLD9-TUMOR_peak_874 chr1 28928352 28928581 + 6.67868 NA Intergenic Intergenic 9459 NM_001193532 115273 Hs.652321 NM_152304 RAB42 - RAB42, member RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_14672 chr13 43556060 43556314 + 6.67868 NA intron (NM_001002264, intron 1 of 12) MER41A|LTR|ERV1 10220 NM_001002264 94240 Hs.546467 NM_033255 HPRD:06309 EPSTI1 BRESI1 epithelial stromal interaction 1 (breast) protein-coding 13-PTNLD9-TUMOR_peak_26279 chr2 20835686 20835830 + 6.67868 NA intron (NM_022460, intron 4 of 6) intron (NM_022460, intron 4 of 6) 15106 NM_022460 64342 Hs.531785 NM_022460 HPRD:13357 HS1BP3 ETM2|HS1-BP3 HCLS1 binding protein 3 protein-coding 13-PTNLD9-TUMOR_peak_17731 chr15 78441683 78441800 + 6.67868 NA promoter-TSS (NM_005530) promoter-TSS (NM_005530) 22 NM_005530 3419 Hs.591110 NM_005530 IDH3A - isocitrate dehydrogenase 3 (NAD+) alpha protein-coding 13-PTNLD9-TUMOR_peak_52276 chr8 139779941 139780174 + 6.67868 NA intron (NM_152888, intron 16 of 64) intron (NM_152888, intron 16 of 64) 146179 NM_152888 169044 Hs.117169 NM_152888 HPRD:09885 COL22A1 - collagen, type XXII, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_6694 chr10 24552092 24552186 + 6.67868 NA intron (NM_001282767, intron 2 of 18) intron (NM_001282767, intron 2 of 18) -12475 NR_030334 693188 NR_030334 MIR603 MIRN603|hsa-mir-603 microRNA 603 ncRNA 13-PTNLD9-TUMOR_peak_46971 chr7 18580941 18581069 + 6.67868 NA intron (NM_001204148, intron 1 of 10) intron (NM_001204148, intron 1 of 10) 32105 NM_001204148 9734 Hs.196054 NM_014707 HPRD:05944 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 13-PTNLD9-TUMOR_peak_39369 chr4 135122909 135123131 + 6.67868 NA promoter-TSS (NM_001114734) promoter-TSS (NM_001114734) -117 NM_001114734 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein, cytoplasmic 4-like protein-coding 13-PTNLD9-TUMOR_peak_37252 chr3 192289204 192289316 + 6.67868 NA intron (NM_004113, intron 2 of 5) intron (NM_004113, intron 2 of 5) 156128 NM_004113 2257 Hs.390250 NM_004113 HPRD:03303 FGF12 FGF12B|FHF1 fibroblast growth factor 12 protein-coding 13-PTNLD9-TUMOR_peak_12376 chr12 27361086 27361184 + 6.67868 NA Intergenic LTR33B|LTR|ERVL -35943 NM_015000 23012 Hs.184523 NM_015000 HPRD:10256 STK38L NDR2 serine/threonine kinase 38 like protein-coding 13-PTNLD9-TUMOR_peak_1223 chr1 38993084 38993248 + 6.67868 NA Intergenic MIRb|SINE|MIR -312727 NR_038928 339442 Hs.434245 NR_038928 ENSG00000237290 LINC01343 - long intergenic non-protein coding RNA 1343 ncRNA 13-PTNLD9-TUMOR_peak_36685 chr3 170052803 170052911 + 6.67868 NA Intergenic MER41A|LTR|ERV1 -22616 NM_001145098 6498 Hs.536655 NM_005414 HPRD:01319 SKIL SNO|SnoA|SnoI|SnoN SKI-like proto-oncogene protein-coding 13-PTNLD9-TUMOR_peak_9255 chr11 19008416 19008536 + 6.67868 NA Intergenic L1PBa|LINE|L1 -51927 NM_147199 259249 Hs.711459 NM_147199 HPRD:06246 MRGPRX1 GPCR|MGRG2|MRGX1|SNSR4 MAS-related GPR, member X1 protein-coding 13-PTNLD9-TUMOR_peak_56374 chrX 114794819 114794989 + 6.67868 NA promoter-TSS (NM_005032) promoter-TSS (NM_005032) -273 NM_001282337 5358 Hs.496622 NM_005032 HPRD:02133 PLS3 BMND18|T-plastin plastin 3 protein-coding 13-PTNLD9-TUMOR_peak_18339 chr16 4000527 4000621 + 6.67868 NA promoter-TSS (NR_120311) promoter-TSS (NR_120311) -129 NR_120311 102724927 Hs.364739 NR_120311 LOC102724927 - uncharacterized LOC102724927 ncRNA 13-PTNLD9-TUMOR_peak_1899 chr1 56591125 56591219 + 6.67868 NA Intergenic Intergenic 454085 NM_003713 8613 Hs.405156 NM_003713 HPRD:06179 PPAP2B Dri42|LPP3|PAP2B|VCIP phosphatidic acid phosphatase type 2B protein-coding 13-PTNLD9-TUMOR_peak_19620 chr16 68106311 68106563 + 6.67868 NA intron (NM_017803, intron 12 of 16) intron (NM_017803, intron 12 of 16) -12832 NM_173163 4775 Hs.436585 NM_004555 HPRD:04077 NFATC3 NFAT4|NFATX nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3 protein-coding 13-PTNLD9-TUMOR_peak_30792 chr20 31850561 31850664 + 6.67868 NA Intergenic Intergenic -20329 NM_033197 92747 Hs.65551 NM_033197 HPRD:12740 BPIFB1 C20orf114|LPLUNC1 BPI fold containing family B, member 1 protein-coding 13-PTNLD9-TUMOR_peak_22044 chr17 73992958 73993065 + 6.67868 NA intron (NM_001113324, intron 3 of 3) intron (NM_001113324, intron 3 of 3) -3976 NM_001258 1018 Hs.706766 NM_001258 HPRD:00446 CDK3 - cyclin-dependent kinase 3 protein-coding 13-PTNLD9-TUMOR_peak_29394 chr2 192500578 192500731 + 6.67868 NA Intergenic Intergenic -42144 NM_001254736 64859 Hs.591610 NM_022837 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_14702 chr13 45563523 45563719 + 6.67868 NA promoter-TSS (NM_012345) promoter-TSS (NM_012345) -8 NM_012345 26747 Hs.525006 NM_012345 HPRD:05073 NUFIP1 NUFIP|bA540M5.1 nuclear fragile X mental retardation protein interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_5613 chr1 225854045 225854212 + 6.67868 NA Intergenic Intergenic -13283 NM_018212 55740 Hs.497893 NM_018212 HPRD:12360 ENAH ENA|MENA|NDPP1 enabled homolog (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_32254 chr21 37476716 37476885 + 6.67868 NA intron (NR_040084, intron 1 of 3) LTR10F|LTR|ERV1 22138 NR_040084 100133286 Hs.728809 NR_040084 ENSG00000230212 LOC100133286 - uncharacterized LOC100133286 ncRNA 13-PTNLD9-TUMOR_peak_49341 chr7 139168939 139169034 + 6.67790 NA promoter-TSS (NM_198508) promoter-TSS (NM_198508) -529 NM_198508 346689 Hs.17572 NM_198508 KLRG2 CLEC15B killer cell lectin-like receptor subfamily G, member 2 protein-coding 13-PTNLD9-TUMOR_peak_30009 chr2 232478550 232478834 + 6.67382 NA Intergenic CpG 21117 NM_152614 165100 Hs.98104 NM_152614 HPRD:14602 C2orf57 - chromosome 2 open reading frame 57 protein-coding 13-PTNLD9-TUMOR_peak_28713 chr2 151334865 151334976 + 6.67269 NA intron (NM_005168, intron 3 of 5) intron (NM_005168, intron 3 of 5) 9289 NM_005168 390 Hs.6838 NM_005168 HPRD:04233 RND3 ARHE|Rho8|RhoE|memB Rho family GTPase 3 protein-coding 13-PTNLD9-TUMOR_peak_54533 chr9 117134738 117134863 + 6.67269 NA intron (NM_030767, intron 4 of 21) intron (NM_030767, intron 4 of 21) 21885 NM_030767 80709 Hs.494895 NM_030767 HPRD:16148 AKNA - AT-hook transcription factor protein-coding 13-PTNLD9-TUMOR_peak_37115 chr3 187443538 187443687 + 6.67269 NA intron (NM_001134738, intron 5 of 7) intron (NM_001134738, intron 5 of 7) 9083 NM_001134738 604 Hs.478588 NM_001706 HPRD:00180 BCL6 BCL5|BCL6A|LAZ3|ZBTB27|ZNF51 B-cell CLL/lymphoma 6 protein-coding 13-PTNLD9-TUMOR_peak_42734 chr5 154057638 154057909 + 6.67269 NA Intergenic MIR|SINE|MIR -34689 NM_015315 23367 Hs.292078 NM_015315 HPRD:11225 LARP1 LARP La ribonucleoprotein domain family, member 1 protein-coding 13-PTNLD9-TUMOR_peak_50505 chr8 29513656 29513812 + 6.67269 NA Intergenic MER117|DNA|hAT-Charlie 91891 NR_026765 619351 Hs.566911 NR_026765 ENSG00000251191 LINC00589 C8orf75 long intergenic non-protein coding RNA 589 ncRNA 13-PTNLD9-TUMOR_peak_47874 chr7 73028670 73028854 + 6.67269 NA intron (NM_032951, intron 2 of 16) MIRb|SINE|MIR 10108 NM_032953 51085 Hs.647055 NM_032951 HPRD:12033 MLXIPL CHREBP|MIO|MONDOB|WBSCR14|WS-bHLH|bHLHd14 MLX interacting protein-like protein-coding 13-PTNLD9-TUMOR_peak_53579 chr9 72664251 72664357 + 6.67269 NA intron (NM_153267, intron 2 of 13) intron (NM_153267, intron 2 of 13) 5807 NM_153267 256691 Hs.547172 NM_153267 HPRD:14353 MAMDC2 - MAM domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_3932 chr1 156368358 156368452 + 6.66405 NA Intergenic LTR10A|LTR|ERV1 21816 NR_029691 407046 NR_029691 MIR9-1 MIRN9-1|hsa-mir-9-1|miRNA9-1 microRNA 9-1 ncRNA 13-PTNLD9-TUMOR_peak_48612 chr7 101585399 101585572 + 6.66405 NA intron (NM_001202544, intron 2 of 21) intron (NM_001202544, intron 2 of 21) 124603 NM_181552 1523 Hs.191482 NM_001913 HPRD:00295 CUX1 CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GOLIM6|Nbla10317|p100|p110|p200|p75 cut-like homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_8467 chr10 122154022 122154153 + 6.66405 NA Intergenic L2c|LINE|L2 -62379 NM_001030059 196051 Hs.40479 NM_001030059 HPRD:18745 PPAPDC1A DPPL2|PPAPDC1 phosphatidic acid phosphatase type 2 domain containing 1A protein-coding 13-PTNLD9-TUMOR_peak_25259 chr19 48167526 48167620 + 6.66405 NA intron (NM_015711, intron 1 of 14) Charlie20a|DNA|hAT-Charlie -49028 NM_014601 30846 Hs.744963 NM_014601 HPRD:10434 EHD2 PAST2 EH-domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_14993 chr13 99229764 99229974 + 6.66405 NA promoter-TSS (NM_001032296) promoter-TSS (NM_001032296) -464 NM_001286649 8428 Hs.508514 NM_003576 HPRD:10385 STK24 HEL-S-95|MST3|MST3B|STE20|STK3 serine/threonine kinase 24 protein-coding 13-PTNLD9-TUMOR_peak_19405 chr16 56553916 56554099 + 6.66405 NA promoter-TSS (NM_031885) promoter-TSS (NM_031885) 1 NM_031885 583 Hs.333738 NM_031885 HPRD:05855 BBS2 BBS Bardet-Biedl syndrome 2 protein-coding 13-PTNLD9-TUMOR_peak_16307 chr14 76452067 76452161 + 6.66405 NA promoter-TSS (NM_001102564) promoter-TSS (NM_001102564) 18 NM_001102564 112752 Hs.532626 NM_052873 HPRD:14449 IFT43 C14orf179|CED3 intraflagellar transport 43 protein-coding 13-PTNLD9-TUMOR_peak_23136 chr18 46463959 46464113 + 6.66405 NA intron (NM_005904, intron 3 of 3) intron (NM_005904, intron 3 of 3) 5141 NM_001190823 4092 Hs.465087 NM_005904 HPRD:04241 SMAD7 CRCS3|MADH7|MADH8 SMAD family member 7 protein-coding 13-PTNLD9-TUMOR_peak_50215 chr8 19919871 19920095 + 6.66405 NA Intergenic Intergenic 120734 NM_001142325 6570 Hs.158322 NM_003053 HPRD:01897 SLC18A1 CGAT|VAT1|VMAT1 solute carrier family 18 (vesicular monoamine transporter), member 1 protein-coding 13-PTNLD9-TUMOR_peak_2469 chr1 92407265 92407447 + 6.66405 NA Intergenic AluSz|SINE|Alu -7572 NM_207189 676 Hs.482520 NM_001726 HPRD:03684 BRDT BRD6|CT9 bromodomain, testis-specific protein-coding 13-PTNLD9-TUMOR_peak_28530 chr2 134399130 134399367 + 6.66405 NA Intergenic Intergenic -73217 NM_207363 344148 Hs.537329 NM_207363 HPRD:16936 NCKAP5 ERIH1|ERIH2|NAP5 NCK-associated protein 5 protein-coding 13-PTNLD9-TUMOR_peak_23745 chr19 5537347 5537523 + 6.66405 NA Intergenic AluJb|SINE|Alu 30570 NR_027064 257000 Hs.515575 NM_153375 HPRD:17859 TINCR LINC00036|NCRNA00036|PLAC2 tissue differentiation-inducing non-protein coding RNA ncRNA 13-PTNLD9-TUMOR_peak_52979 chr9 30539971 30540065 + 6.66405 NA Intergenic L1PA3|LINE|L1 -131566 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 13-PTNLD9-TUMOR_peak_49167 chr7 132883016 132883265 + 6.66405 NA Intergenic Intergenic -54683 NM_001037126 60412 Hs.321273 NM_021807 HPRD:12185 EXOC4 SEC8|SEC8L1|Sec8p exocyst complex component 4 protein-coding 13-PTNLD9-TUMOR_peak_36645 chr3 167789419 167789560 + 6.66405 NA intron (NM_014498, intron 1 of 15) intron (NM_014498, intron 1 of 15) 23928 NM_014498 27333 Hs.143600 NM_014498 HPRD:08429 GOLIM4 GIMPC|GOLPH4|GPP130|P138 golgi integral membrane protein 4 protein-coding 13-PTNLD9-TUMOR_peak_54999 chr9 137248987 137249101 + 6.66405 NA intron (NM_002957, intron 1 of 9) intron (NM_002957, intron 1 of 9) -22097 NM_001291920 6256 Hs.590886 NM_002957 RXRA NR2B1 retinoid X receptor, alpha protein-coding 13-PTNLD9-TUMOR_peak_40304 chr5 10453796 10454003 + 6.65880 NA intron (NM_031916, intron 3 of 4) intron (NM_031916, intron 3 of 4) 11925 NM_001201466 83853 Hs.381089 NM_031916 HPRD:17986 ROPN1L ASP|RSPH11 rhophilin associated tail protein 1-like protein-coding 13-PTNLD9-TUMOR_peak_50971 chr8 55389971 55390083 + 6.65620 NA Intergenic MIRb|SINE|MIR 19532 NM_022454 64321 Hs.98367 NM_022454 HPRD:18085 SOX17 VUR3 SRY (sex determining region Y)-box 17 protein-coding 13-PTNLD9-TUMOR_peak_22185 chr17 76879771 76880128 + 6.65620 NA intron (NM_003255, intron 1 of 4) intron (NM_003255, intron 1 of 4) 19350 NM_001243540 100653515 Hs.734636 NM_001243540 ENSG00000178404 KIAA1731NL DDC8 KIAA1731 N-terminal like protein-coding 13-PTNLD9-TUMOR_peak_23617 chr19 1275357 1275604 + 6.65620 NA promoter-TSS (NM_017914) promoter-TSS (NM_017914) -40 NM_017914 55009 Hs.591383 NM_017914 C19orf24 - chromosome 19 open reading frame 24 protein-coding 13-PTNLD9-TUMOR_peak_32127 chr21 33251232 33251403 + 6.65620 NA intron (NM_014586, intron 1 of 10) intron (NM_014586, intron 1 of 10) 5689 NM_014586 30811 Hs.109437 NM_014586 HPRD:09410 HUNK - hormonally up-regulated Neu-associated kinase protein-coding 13-PTNLD9-TUMOR_peak_5188 chr1 205240028 205240152 + 6.65586 NA intron (NM_001297611, intron 2 of 3) MIRb|SINE|MIR 14761 NM_001297613 9911 Hs.6360 NM_014858 HPRD:11040 TMCC2 HUCEP11 transmembrane and coiled-coil domain family 2 protein-coding 13-PTNLD9-TUMOR_peak_6390 chr10 6183268 6183362 + 6.65445 NA Intergenic Intergenic -3528 NM_001145443 5209 Hs.195471 NM_004566 HPRD:05612 PFKFB3 IPFK2|PFK2 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 protein-coding 13-PTNLD9-TUMOR_peak_30994 chr20 37228376 37228601 + 6.65445 NA Intergenic Intergenic -2089 NM_001164431 343578 Hs.451997 NM_001164431 ENSG00000124143 ARHGAP40 C20orf95|dJ1100H13.4 Rho GTPase activating protein 40 protein-coding 13-PTNLD9-TUMOR_peak_52963 chr9 27537180 27537307 + 6.65445 NA Intergenic LTR16E1|LTR|ERVL -7393 NM_024761 79817 Hs.369022 NM_024761 HPRD:14728 MOB3B C9orf35|MOB1D|MOBKL2B MOB kinase activator 3B protein-coding 13-PTNLD9-TUMOR_peak_3890 chr1 155841384 155841501 + 6.65445 NA intron (NM_152280, intron 2 of 3) intron (NM_152280, intron 2 of 3) 12182 NM_152280 23208 Hs.32984 NM_152280 HPRD:12289 SYT11 SYT12|sytXI synaptotagmin XI protein-coding 13-PTNLD9-TUMOR_peak_43645 chr6 6724884 6725011 + 6.65445 NA Intergenic Intergenic -101888 NR_026970 285780 Hs.655737 NM_173675 HPRD:08165 LY86-AS1 LY86-AS|LY86AS LY86 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_44422 chr6 29932758 29932915 + 6.65445 NA Intergenic LTR18B|LTR|ERVL -10056 NR_028032 10255 Hs.656251 NM_005844 HPRD:17092 HCG9 HCGIX|HCGIX4 HLA complex group 9 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_9934 chr11 59034869 59034975 + 6.65445 NA Intergenic Intergenic -54428 NM_001039396 219972 Hs.744920 NM_001039396 ENSG00000197629 MPEG1 MPG1|MPS1|Mpg-1 macrophage expressed 1 protein-coding 13-PTNLD9-TUMOR_peak_53122 chr9 35712011 35712119 + 6.65445 NA exon (NM_006289, exon 28 of 57) exon (NM_006289, exon 28 of 57) -1327 NR_106911 102465513 NR_106911 MIR6852 hsa-mir-6852 microRNA 6852 ncRNA 13-PTNLD9-TUMOR_peak_24864 chr19 38328540 38328663 + 6.65445 NA intron (NR_040015, intron 2 of 5) L1PA2|LINE|L1 17235 NR_040015 100631378 Hs.726940 NR_040015 ENSG00000225868 LOC100631378 - uncharacterized 100631378 ncRNA 13-PTNLD9-TUMOR_peak_42474 chr5 144915780 144916019 + 6.65445 NA Intergenic Intergenic 299033 NM_138492 153768 Hs.314261 NM_138492 HPRD:14479 PRELID2 - PRELI domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_32514 chr21 45279964 45280059 + 6.65445 NA Intergenic MER41A|LTR|ERV1 -5105 NM_020132 56894 Hs.248785 NM_020132 HPRD:10637 AGPAT3 LPAAT-GAMMA1|LPAAT3 1-acylglycerol-3-phosphate O-acyltransferase 3 protein-coding 13-PTNLD9-TUMOR_peak_21665 chr17 57923741 57923866 + 6.64992 NA Intergenic Intergenic 5176 NR_029493 406991 Hs.444569 NR_029493 miRBase:MI0000077 MIR21 MIRN21|hsa-mir-21|miR-21|miRNA21 microRNA 21 ncRNA 13-PTNLD9-TUMOR_peak_49428 chr7 142027889 142028068 + 6.64791 NA Intergenic Intergenic -55910 NR_036483 207147 Hs.604069 NR_036483 TRY2P - trypsinogen-like pseudogene pseudo 13-PTNLD9-TUMOR_peak_52405 chr8 144097330 144097626 + 6.64791 NA intron (NR_026913, intron 1 of 1) MER21A|LTR|ERVL 2329 NR_026913 100133669 Hs.195309 NR_026913 LOC100133669 - uncharacterized LOC100133669 ncRNA 13-PTNLD9-TUMOR_peak_18985 chr16 30239761 30239881 + 6.64754 NA intron (NR_002555, intron 4 of 6) intron (NR_002555, intron 4 of 6) 17111 NR_002555 613037 Hs.585733 NR_002555 ENSG00000198064 LOC613037 - nuclear pore complex interacting protein pseudogene pseudo 13-PTNLD9-TUMOR_peak_44848 chr6 37027490 37027613 + 6.64664 NA Intergenic Intergenic 54128 NM_173558 221472 Hs.509664 NM_173558 HPRD:05478 FGD2 ZFYVE4 FYVE, RhoGEF and PH domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_37356 chr3 194808819 194809079 + 6.64408 NA intron (NM_152531, intron 3 of 3) L1PA2|LINE|L1 -6368 NR_104188 100874528 Hs.581659 NR_104188 XXYLT1-AS1 - XXYLT1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_2905 chr1 113500244 113500361 + 6.64408 NA non-coding (NR_103743, exon 1 of 3) non-coding (NR_103743, exon 1 of 3) 1265 NR_103743 100506392 Hs.418285 NR_103743 ENSG00000226419 SLC16A1-AS1 - SLC16A1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_18502 chr16 10972445 10972829 + 6.64408 NA intron (NR_104444, intron 1 of 17) intron (NR_104444, intron 1 of 17) 1582 NM_001286403 4261 Hs.701991 NM_000246 HPRD:02475 CIITA C2TA|CIITAIV|MHC2TA|NLRA class II, major histocompatibility complex, transactivator protein-coding 13-PTNLD9-TUMOR_peak_39612 chr4 151201217 151201636 + 6.64408 NA intron (NM_006726, intron 56 of 57) intron (NM_006726, intron 56 of 57) 202000 NR_036614 166614 Hs.591683 NM_152619 HPRD:13122 DCLK2 CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2 doublecortin-like kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_2608 chr1 98789480 98789648 + 6.64408 NA Intergenic MLT2F|LTR|ERVL 113297 NR_046088 729987 Hs.683961 NR_046088 ENSG00000226053 LOC729987 - uncharacterized LOC729987 ncRNA 13-PTNLD9-TUMOR_peak_52775 chr9 14425210 14425317 + 6.63784 NA Intergenic Intergenic -26281 NM_001190738 4781 Hs.644095 NM_005596 HPRD:09008 NFIB CTF|HMGIC/NFIB|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I/B protein-coding 13-PTNLD9-TUMOR_peak_18716 chr16 20963687 20963795 + 6.63784 NA intron (NM_017539, intron 56 of 61) intron (NM_017539, intron 56 of 61) 51666 NM_001128302 57149 Hs.745012 NM_020424 HPRD:14254 LYRM1 A211C6.1 LYR motif containing 1 protein-coding 13-PTNLD9-TUMOR_peak_46167 chr6 140667705 140667911 + 6.63784 NA Intergenic Intergenic 141419 NR_037441 100500879 NR_037441 miRBase:MI0016069 MIR3668 - microRNA 3668 ncRNA 13-PTNLD9-TUMOR_peak_51187 chr8 80705982 80706112 + 6.63784 NA intron (NR_125410, intron 3 of 3) Tigger7|DNA|TcMar-Tigger 25670 NR_125410 101927067 Hs.144030 NR_125410 ENSG00000272138 LOC101927067 - uncharacterized LOC101927067 ncRNA 13-PTNLD9-TUMOR_peak_50439 chr8 27503281 27503430 + 6.63784 NA intron (NM_016240, intron 1 of 5) intron (NM_016240, intron 1 of 5) 11778 NM_016240 51435 Hs.128856 NM_016240 HPRD:04104 SCARA3 APC7|CSR|CSR1|MSLR1|MSRL1 scavenger receptor class A, member 3 protein-coding 13-PTNLD9-TUMOR_peak_147 chr1 2524312 2524406 + 6.63784 NA exon (NM_033467, exon 20 of 24) exon (NM_033467, exon 20 of 24) 6170 NM_001195740 127281 Hs.462033 NM_152371 HPRD:14513 FAM213B C1orf93 family with sequence similarity 213, member B protein-coding 13-PTNLD9-TUMOR_peak_34677 chr3 53106757 53106895 + 6.63784 NA Intergenic Intergenic -26737 NM_016329 51460 Hs.343679 NM_016329 HPRD:09539 SFMBT1 RU1|SFMBT|hSFMBT Scm-like with four mbt domains 1 protein-coding 13-PTNLD9-TUMOR_peak_46542 chr6 168151801 168151941 + 6.63784 NA Intergenic Intergenic 45668 NR_026773 26238 Hs.520583 NM_014356 HPRD:12846 C6orf123 HGC6.2|dJ431P23.4 chromosome 6 open reading frame 123 ncRNA 13-PTNLD9-TUMOR_peak_47410 chr7 46555519 46555684 + 6.63784 NA Intergenic ERVL-E-int|LTR|ERVL -594730 NM_001013398 3486 Hs.450230 NM_000598 HPRD:00899 IGFBP3 BP-53|IBP3 insulin-like growth factor binding protein 3 protein-coding 13-PTNLD9-TUMOR_peak_8411 chr10 118609168 118609291 + 6.63784 NA exon (NM_001242699, exon 1 of 14) exon (NM_001242699, exon 1 of 14) 206 NM_001242699 387712 Hs.693248 NM_001242699 ENSG00000188316 ENO4 C10orf134 enolase family member 4 protein-coding 13-PTNLD9-TUMOR_peak_46409 chr6 158245161 158245276 + 6.63784 NA intron (NM_016224, intron 1 of 17) intron (NM_016224, intron 1 of 17) 1015 NM_016224 51429 Hs.191213 NM_016224 HPRD:12072 SNX9 SDP1|SH3PX1|SH3PXD3A|WISP sorting nexin 9 protein-coding 13-PTNLD9-TUMOR_peak_45820 chr6 105850731 105851226 + 6.63784 NA promoter-TSS (NM_002726) promoter-TSS (NM_002726) 21 NM_002726 5550 Hs.436564 NM_002726 HPRD:02673 PREP PE|PEP prolyl endopeptidase protein-coding 13-PTNLD9-TUMOR_peak_54448 chr9 114613996 114614132 + 6.63784 NA Intergenic Intergenic -45142 NM_003358 7357 Hs.304249 NM_003358 UGCG GCS|GLCT1 UDP-glucose ceramide glucosyltransferase protein-coding 13-PTNLD9-TUMOR_peak_36711 chr3 170900178 170900365 + 6.63784 NA intron (NM_001161565, intron 7 of 30) intron (NM_001161565, intron 7 of 30) -75723 NR_030295 693154 NR_030295 MIR569 MIRN569|hsa-mir-569 microRNA 569 ncRNA 13-PTNLD9-TUMOR_peak_2216 chr1 76590003 76590173 + 6.63784 NA intron (NM_152996, intron 1 of 4) intron (NM_152996, intron 1 of 4) 49699 NM_001160011 256435 Hs.337040 NM_152996 ST6GALNAC3 PRO7177|SIAT7C|ST6GALNACIII|STY ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding 13-PTNLD9-TUMOR_peak_19936 chr16 84430197 84430481 + 6.63784 NA intron (NM_014861, intron 1 of 26) intron (NM_014861, intron 1 of 26) -9855 NM_001291454 9914 Hs.6168 NM_014861 HPRD:13812 ATP2C2 SPCA2 ATPase, Ca++ transporting, type 2C, member 2 protein-coding 13-PTNLD9-TUMOR_peak_18828 chr16 24986762 24987078 + 6.63784 NA intron (NM_001006634, intron 3 of 19) intron (NM_001006634, intron 3 of 19) 39779 NM_018054 55114 Hs.373793 NM_018054 HPRD:12207 ARHGAP17 MST066|MST110|MSTP038|MSTP066|MSTP110|NADRIN|PP367|PP4534|RICH-1|RICH1|WBP15 Rho GTPase activating protein 17 protein-coding 13-PTNLD9-TUMOR_peak_52001 chr8 128920167 128920399 + 6.63784 NA intron (NR_003367, intron 1 of 7) intron (NR_003367, intron 1 of 7) 17409 NR_003367 5820 Hs.133107 NR_003367 ENSG00000249859 PVT1 LINC00079|NCRNA00079 Pvt1 oncogene (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_2058 chr1 64333964 64334081 + 6.63784 NA intron (NM_001083592, intron 1 of 6) intron (NM_001083592, intron 1 of 6) 94332 NM_001083592 4919 Hs.128753 NM_005012 HPRD:03821 ROR1 NTRKR1|dJ537F10.1 receptor tyrosine kinase-like orphan receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_38856 chr4 89436891 89436985 + 6.63784 NA Intergenic Intergenic 8014 NM_032906 100996939 Hs.26136 NM_032906 ENSG00000145337 PYURF PREY PIGY upstream reading frame protein-coding 13-PTNLD9-TUMOR_peak_747 chr1 26344294 26344402 + 6.63784 NA Intergenic Intergenic -3923 NM_004455 2134 Hs.150956 NM_004455 HPRD:03441 EXTL1 EXTL exostosin-like glycosyltransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_10896 chr11 91706194 91706351 + 6.63784 NA Intergenic MLT1A-int|LTR|ERVL-MaLR -378990 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10 FAT atypical cadherin 3 protein-coding 13-PTNLD9-TUMOR_peak_27946 chr2 109173135 109173348 + 6.63784 NA intron (NM_001193483, intron 1 of 9) LTR3B|LTR|ERVK 22430 NM_001193483 3987 Hs.597715 NM_004987 HPRD:03978 LIMS1 PINCH|PINCH-1|PINCH1 LIM and senescent cell antigen-like domains 1 protein-coding 13-PTNLD9-TUMOR_peak_11861 chr12 3714460 3714695 + 6.63784 NA Intergenic Intergenic 114213 NM_019854 56341 Hs.504530 NM_019854 HPRD:11029 PRMT8 HRMT1L3|HRMT1L4 protein arginine methyltransferase 8 protein-coding 13-PTNLD9-TUMOR_peak_22477 chr18 3602921 3603145 + 6.63555 NA promoter-TSS (NR_119377) promoter-TSS (NR_119377) -702 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_37810 chr4 7069204 7069375 + 6.63555 NA intron (NM_025196, intron 1 of 3) CpG 511 NM_025196 80273 Hs.443723 NM_025196 GRPEL1 HMGE GrpE-like 1, mitochondrial (E. coli) protein-coding 13-PTNLD9-TUMOR_peak_24372 chr19 18132735 18132873 + 6.63531 NA Intergenic AluSx1|SINE|Alu 13827 NM_001286826 27106 Hs.515249 NM_015683 HPRD:12492 ARRDC2 CLONE24945 arrestin domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_19457 chr16 57846517 57846714 + 6.63531 NA intron (NM_001278081, intron 1 of 4) intron (NM_001278081, intron 1 of 4) 2066 NM_001278081 388282 Hs.434720 NM_001278081 LOC388282 - uncharacterized LOC388282 protein-coding 13-PTNLD9-TUMOR_peak_53001 chr9 32552547 32552675 + 6.63531 NA promoter-TSS (NM_001195622) promoter-TSS (NM_001195622) 15 NM_001195622 10210 Hs.589962 NM_005802 HPRD:11642 TOPORS LUN|P53BP3|RP31|TP53BPL topoisomerase I binding, arginine/serine-rich, E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_43738 chr6 10419730 10419897 + 6.63043 NA promoter-TSS (NM_001042425) promoter-TSS (NM_001042425) -16 NM_001042425 7020 Hs.519880 NM_003220 HPRD:00128 TFAP2A AP-2|AP-2alpha|AP2TF|BOFS|TFAP2 transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha) protein-coding 13-PTNLD9-TUMOR_peak_23683 chr19 2952998 2953219 + 6.63043 NA Intergenic LTR43B|LTR|ERV1 -8139 NM_021217 58492 Hs.38004 NM_021217 HPRD:08936 ZNF77 pT1 zinc finger protein 77 protein-coding 13-PTNLD9-TUMOR_peak_47324 chr7 43624007 43624148 + 6.63043 NA intron (NM_004760, intron 1 of 6) MIR|SINE|MIR 1385 NM_004760 9263 Hs.709489 NM_004760 HPRD:05288 STK17A DRAK1 serine/threonine kinase 17a protein-coding 13-PTNLD9-TUMOR_peak_41012 chr5 60600861 60601040 + 6.63043 NA Intergenic Intergenic -27150 NM_020928 57688 Hs.744939 NM_020928 ENSG00000130449 ZSWIM6 - zinc finger, SWIM-type containing 6 protein-coding 13-PTNLD9-TUMOR_peak_37676 chr4 3710972 3711077 + 6.63020 NA Intergenic Intergenic -31442 NR_034136 100133461 Hs.554274 NR_034136 ENSG00000250632 LOC100133461 - uncharacterized LOC100133461 ncRNA 13-PTNLD9-TUMOR_peak_42080 chr5 133340986 133341099 + 6.63020 NA promoter-TSS (NM_003374) promoter-TSS (NM_003374) -218 NM_003374 7416 Hs.519320 NM_003374 HPRD:05137 VDAC1 PORIN|VDAC-1 voltage-dependent anion channel 1 protein-coding 13-PTNLD9-TUMOR_peak_37330 chr3 194300041 194300140 + 6.63020 NA Intergenic Intergenic -4907 NR_047574 100507297 Hs.586059 NR_047573 TMEM44-AS1 - TMEM44 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_10347 chr11 67122210 67122350 + 6.62899 NA intron (NR_024469, intron 2 of 3) intron (NR_024469, intron 2 of 3) -1213 NM_021173 57804 Hs.523829 NM_021173 POLD4 POLDS|p12 polymerase (DNA-directed), delta 4, accessory subunit protein-coding 13-PTNLD9-TUMOR_peak_29107 chr2 173940806 173941209 + 6.62887 NA intron (NM_016653, intron 1 of 19) CpG 442 NM_016653 51776 Hs.444451 NM_016653 HPRD:11791 ZAK AZK|MLK7|MLT|MLTK|MRK|mlklak|pk sterile alpha motif and leucine zipper containing kinase AZK protein-coding 13-PTNLD9-TUMOR_peak_7525 chr10 65224879 65225187 + 6.62887 NA promoter-TSS (NR_027182) promoter-TSS (NR_027182) 44 NR_027182 84989 Hs.659950 NM_032903 ENSG00000272767 JMJD1C-AS1 - JMJD1C antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_7624 chr10 71892507 71892679 + 6.62887 NA promoter-TSS (NM_001198696) promoter-TSS (NM_001198696) 97 NM_001198696 84883 Hs.650680 NM_032797 HPRD:09797 AIFM2 AMID|PRG3 apoptosis-inducing factor, mitochondrion-associated, 2 protein-coding 13-PTNLD9-TUMOR_peak_9630 chr11 44494588 44494805 + 6.62887 NA Intergenic Intergenic -92445 NM_002231 3732 Hs.527778 NM_002231 CD82 4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27 CD82 molecule protein-coding 13-PTNLD9-TUMOR_peak_41608 chr5 99236039 99236225 + 6.62887 NA Intergenic ERVL-E-int|LTR|ERVL 366438 NR_110562 102724855 Hs.519477 NR_110562 CTD-2151A2.1 - uncharacterized LOC102724855 ncRNA 13-PTNLD9-TUMOR_peak_56693 chrX 153265603 153265905 + 6.62887 NA Intergenic Intergenic -19127 NR_036175 100422877 NR_036175 MIR3202-2 - microRNA 3202-2 ncRNA 13-PTNLD9-TUMOR_peak_48222 chr7 87158184 87158278 + 6.62887 NA intron (NM_000927, intron 22 of 28) L2b|LINE|L2 -53212 NM_018850 5244 Hs.654403 NM_000443 HPRD:01371 ABCB4 ABC21|GBD1|ICP3|MDR2|MDR2/3|MDR3|PFIC-3|PGY3 ATP-binding cassette, sub-family B (MDR/TAP), member 4 protein-coding 13-PTNLD9-TUMOR_peak_32570 chr21 46712515 46712674 + 6.62887 NA non-coding (NR_026943, exon 3 of 3) non-coding (NR_026943, exon 3 of 3) 4627 NR_026943 642852 Hs.11637 NR_026943 LOC642852 - uncharacterized LOC642852 ncRNA 13-PTNLD9-TUMOR_peak_2373 chr1 88110673 88110850 + 6.62887 NA Intergenic Intergenic -273423 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 13-PTNLD9-TUMOR_peak_27521 chr2 87934879 87934992 + 6.62887 NA Intergenic Intergenic 5656 NR_039636 100616341 NR_039636 miRBase:MI0016777 MIR4435-2 - microRNA 4435-2 ncRNA 13-PTNLD9-TUMOR_peak_31530 chr20 51562824 51562920 + 6.62887 NA Intergenic Intergenic -26074 NM_173485 128553 Hs.473117 NM_173485 HPRD:10730 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 13-PTNLD9-TUMOR_peak_22615 chr18 11909659 11909758 + 6.62887 NA promoter-TSS (NM_001242904) promoter-TSS (NM_001242904) -912 NR_040241 65258 Hs.712666 NM_023075 HPRD:14734 MPPE1 PGAP5 metallophosphoesterase 1 protein-coding 13-PTNLD9-TUMOR_peak_20438 chr17 8269592 8269926 + 6.62887 NA Intergenic Intergenic 5099 NM_213597 124751 Hs.304604 NM_213597 HPRD:14028 KRBA2 - KRAB-A domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_165 chr1 3494796 3494909 + 6.62887 NA intron (NM_001409, intron 4 of 36) intron (NM_001409, intron 4 of 36) -17498 NR_030277 693135 NR_030277 MIR551A MIRN551A microRNA 551a ncRNA 13-PTNLD9-TUMOR_peak_768 chr1 26758413 26758507 + 6.62887 NA promoter-TSS (NM_024887) promoter-TSS (NM_024887) -313 NM_001243565 79947 Hs.369385 NM_024887 HPRD:12183 DHDDS CIT|CPT|DS|HDS|RP59 dehydrodolichyl diphosphate synthase protein-coding 13-PTNLD9-TUMOR_peak_55590 chrX 17366125 17366243 + 6.62887 NA Intergenic L1PA2|LINE|L1 -27359 NM_198270 4810 Hs.201623 NM_198270 HPRD:02351 NHS CTRCT40|CXN|SCML1 Nance-Horan syndrome (congenital cataracts and dental anomalies) protein-coding 13-PTNLD9-TUMOR_peak_7712 chr10 73786645 73786805 + 6.62887 NA Intergenic Intergenic 61806 NM_001244950 9806 Hs.523009 NM_014767 HPRD:12146 SPOCK2 testican-2 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2 protein-coding 13-PTNLD9-TUMOR_peak_12138 chr12 11700111 11700357 + 6.62887 NA promoter-TSS (NR_033890) promoter-TSS (NR_033890) -730 NR_033890 338817 Hs.733066 NR_033890 ENSG00000247157 LINC01252 - long intergenic non-protein coding RNA 1252 ncRNA 13-PTNLD9-TUMOR_peak_45297 chr6 52654549 52654679 + 6.62887 NA Intergenic MLT1C|LTR|ERVL-MaLR 14050 NM_145740 2938 Hs.446309 NM_145740 GSTA1 GST2|GSTA1-1|GTH1 glutathione S-transferase alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_36639 chr3 166828853 166829013 + 6.62887 NA Intergenic Intergenic 269138 NM_001199202 79740 Hs.478143 NM_024687 HPRD:08015 ZBBX - zinc finger, B-box domain containing protein-coding 13-PTNLD9-TUMOR_peak_39183 chr4 120024538 120024694 + 6.62887 NA Intergenic MIRc|SINE|MIR -32323 NM_016599 51778 Hs.732122 NM_016599 HPRD:05724 MYOZ2 C4orf5|CMH16|CS-1 myozenin 2 protein-coding 13-PTNLD9-TUMOR_peak_6555 chr10 15209876 15210153 + 6.62313 NA intron (NM_004808, intron 1 of 11) CpG 681 NM_004808 9397 Hs.60339 NM_004808 NMT2 - N-myristoyltransferase 2 protein-coding 13-PTNLD9-TUMOR_peak_12954 chr12 55561101 55561247 + 6.62313 NA Intergenic L1PA3|LINE|L1 37621 NM_001005243 441639 Hs.553827 NM_001005243 HPRD:15090 OR9K2 OR12-2 olfactory receptor, family 9, subfamily K, member 2 protein-coding 13-PTNLD9-TUMOR_peak_1253 chr1 39853224 39853326 + 6.62313 NA exon (NM_012090, exon 52 of 93) exon (NM_012090, exon 52 of 93) -21901 NM_015038 643314 Hs.658760 NM_015038 ENSG00000255103 KIAA0754 - KIAA0754 protein-coding 13-PTNLD9-TUMOR_peak_4171 chr1 162106705 162106808 + 6.62313 NA intron (NM_001164757, intron 1 of 9) intron (NM_001164757, intron 1 of 9) -20141 NR_039798 100616386 NR_039798 MIR4654 - microRNA 4654 ncRNA 13-PTNLD9-TUMOR_peak_55793 chrX 47221163 47221274 + 6.62313 NA Intergenic Intergenic -8781 NM_003446 7712 Hs.89897 NM_003446 ZNF157 HZF22 zinc finger protein 157 protein-coding 13-PTNLD9-TUMOR_peak_19525 chr16 66416958 66417059 + 6.61601 NA intron (NM_001795, intron 2 of 11) L1MC3|LINE|L1 16483 NM_001795 1003 Hs.76206 NM_001795 HPRD:03075 CDH5 7B4|CD144 cadherin 5, type 2 (vascular endothelium) protein-coding 13-PTNLD9-TUMOR_peak_54253 chr9 103452900 103453064 + 6.61601 NA Intergenic Intergenic 112621 NM_001018116 347273 Hs.99004 NM_001018116 HPRD:18599 MURC CAVIN4|cavin-4 muscle-related coiled-coil protein protein-coding 13-PTNLD9-TUMOR_peak_23998 chr19 11430080 11430192 + 6.61601 NA intron (NM_012466, intron 6 of 6) AluSg|SINE|Alu 20208 NM_004283 9545 Hs.744916 NM_004283 HPRD:05070 RAB3D D2-2|GOV|RAB16|RAD3D RAB3D, member RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_21429 chr17 48121185 48121451 + 6.61601 NA Intergenic Intergenic 11785 NR_038230 284080 Hs.274864 NR_038230 ENSG00000246640 LOC284080 - uncharacterized LOC284080 ncRNA 13-PTNLD9-TUMOR_peak_4388 chr1 171455160 171455519 + 6.61185 NA intron (NM_015172, intron 1 of 33) intron (NM_015172, intron 1 of 33) 673 NM_015172 23215 Hs.494614 NM_015172 HPRD:16539 PRRC2C BAT2-iso|BAT2D1|BAT2L2|XTP2 proline-rich coiled-coil 2C protein-coding 13-PTNLD9-TUMOR_peak_37456 chr3 196756690 196756988 + 6.61136 NA promoter-TSS (NM_033316) promoter-TSS (NM_033316) -152 NM_005929 4241 Hs.184727 NM_005929 HPRD:01122 MFI2 CD228|MAP97|MTF1 antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5 protein-coding 13-PTNLD9-TUMOR_peak_49104 chr7 130792788 130792979 + 6.61136 NA non-coding (NR_015431, exon 2 of 5) non-coding (NR_015431, exon 2 of 5) -1094 NR_024153 378805 Hs.150556 NM_001085379 ENSG00000226380 LINC-PINT LincRNA-Pint|MKLN1-AS1|PINT long intergenic non-protein coding RNA, p53 induced transcript ncRNA 13-PTNLD9-TUMOR_peak_24996 chr19 41111665 41111796 + 6.61023 NA exon (NM_003573, exon 7 of 33) exon (NM_003573, exon 7 of 33) 4453 NM_001042545 8425 Hs.466766 NM_003573 HPRD:05274 LTBP4 ARCL1C|LTBP-4|LTBP4L|LTBP4S latent transforming growth factor beta binding protein 4 protein-coding 13-PTNLD9-TUMOR_peak_32816 chr22 21271197 21271317 + 6.60847 NA promoter-TSS (NM_005207) promoter-TSS (NM_005207) -457 NM_005207 1399 Hs.5613 NM_005207 HPRD:03596 CRKL - v-crk avian sarcoma virus CT10 oncogene homolog-like protein-coding 13-PTNLD9-TUMOR_peak_24798 chr19 36540226 36540490 + 6.60480 NA intron (NM_152658, intron 1 of 3) intron (NM_152658, intron 1 of 3) 5306 NM_152658 199745 Hs.350209 NM_152658 HPRD:15501 THAP8 - THAP domain containing 8 protein-coding 13-PTNLD9-TUMOR_peak_28696 chr2 150186347 150186558 + 6.60480 NA promoter-TSS (NM_194317) promoter-TSS (NM_194317) -47 NM_001195685 130574 Hs.21929 NM_194317 HPRD:14676 LYPD6 - LY6/PLAUR domain containing 6 protein-coding 13-PTNLD9-TUMOR_peak_21431 chr17 48125010 48125218 + 6.60480 NA Intergenic Intergenic 7989 NR_038230 284080 Hs.274864 NR_038230 ENSG00000246640 LOC284080 - uncharacterized LOC284080 ncRNA 13-PTNLD9-TUMOR_peak_50742 chr8 42128738 42128854 + 6.60480 NA promoter-TSS (NM_001190720) promoter-TSS (NM_001190720) -24 NM_001242778 3551 Hs.597664 NM_001556 HPRD:04462 IKBKB IKK-beta|IKK2|IKKB|IMD15|NFKBIKB inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta protein-coding 13-PTNLD9-TUMOR_peak_42014 chr5 131563526 131563626 + 6.60480 NA promoter-TSS (NM_004199) promoter-TSS (NM_004199) -20 NM_001142599 8974 Hs.519568 NM_004199 HPRD:11862 P4HA2 - prolyl 4-hydroxylase, alpha polypeptide II protein-coding 13-PTNLD9-TUMOR_peak_9359 chr11 27241289 27241580 + 6.60480 NA non-coding (NR_125766, exon 1 of 5) non-coding (NR_125766, exon 1 of 5) 226 NR_125766 103695435 Hs.196133 NR_125766 BBOX1-AS1 - BBOX1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_8757 chr11 798183 798367 + 6.60480 NA promoter-TSS (NM_001191061) promoter-TSS (NM_001191061) -6 NM_001191061 79751 Hs.99486 NM_024698 HPRD:15356 SLC25A22 EIEE3|GC1|NET44 solute carrier family 25 (mitochondrial carrier: glutamate), member 22 protein-coding 13-PTNLD9-TUMOR_peak_49485 chr7 143088669 143088821 + 6.59795 NA TTS (NM_003461) TTS (NM_003461) 8966 NR_106952 102465538 NR_106952 MIR6892 hsa-mir-6892 microRNA 6892 ncRNA 13-PTNLD9-TUMOR_peak_53647 chr9 75835252 75835501 + 6.59734 NA Intergenic MLT1C|LTR|ERVL-MaLR 68595 NM_000700 301 Hs.494173 NM_000700 HPRD:01060 ANXA1 ANX1|LPC1 annexin A1 protein-coding 13-PTNLD9-TUMOR_peak_26705 chr2 43237973 43238089 + 6.59734 NA Intergenic MLT1J-int|LTR|ERVL-MaLR 28651 NR_110585 102723854 Hs.570165 NR_110585 LOC102723854 - uncharacterized LOC102723854 ncRNA 13-PTNLD9-TUMOR_peak_52880 chr9 20941083 20941320 + 6.59734 NA intron (NM_017794, intron 30 of 45) intron (NM_017794, intron 30 of 45) 90434 NM_001010915 401494 Hs.716678 NM_001010915 PTPLAD2 HACD4 protein tyrosine phosphatase-like A domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_34067 chr3 23754153 23754247 + 6.59734 NA Intergenic Intergenic -93184 NM_182666 7324 Hs.164853 NM_003341 HPRD:04225 UBE2E1 UBCH6 ubiquitin-conjugating enzyme E2E 1 protein-coding 13-PTNLD9-TUMOR_peak_37201 chr3 189923677 189923771 + 6.59734 NA Intergenic L2b|LINE|L2 -83498 NM_001134418 55214 Hs.374191 NM_018192 HPRD:17270 LEPREL1 MCVD|MLAT4|P3H2 leprecan-like 1 protein-coding 13-PTNLD9-TUMOR_peak_15929 chr14 60294233 60294384 + 6.59734 NA intron (NM_021136, intron 1 of 8) intron (NM_021136, intron 1 of 8) 43249 NM_021136 6252 Hs.368626 NM_021136 HPRD:02921 RTN1 NSP reticulon 1 protein-coding 13-PTNLD9-TUMOR_peak_51648 chr8 116938412 116938560 + 6.59734 NA Intergenic Intergenic -257231 NM_014112 7227 Hs.657018 NM_014112 HPRD:05091 TRPS1 GC79|LGCR trichorhinophalangeal syndrome I protein-coding 13-PTNLD9-TUMOR_peak_12939 chr12 54826195 54826518 + 6.59734 NA intron (NR_120487, intron 3 of 3) intron (NR_120487, intron 3 of 3) 12787 NR_120488 102724050 Hs.670941 NR_120486 LOC102724050 - uncharacterized LOC102724050 ncRNA 13-PTNLD9-TUMOR_peak_16434 chr14 91002909 91003070 + 6.59734 NA Intergenic L2a|LINE|L2 81415 NR_033986 400238 Hs.131037 NR_033986 ENSG00000233208 LINC00642 - long intergenic non-protein coding RNA 642 ncRNA 13-PTNLD9-TUMOR_peak_1202 chr1 38342584 38342708 + 6.59734 NA intron (NM_001297434, intron 10 of 17) AluJb|SINE|Alu -17354 NM_005955 4520 Hs.471991 NM_005955 HPRD:02546 MTF1 MTF-1|ZRF metal-regulatory transcription factor 1 protein-coding 13-PTNLD9-TUMOR_peak_34954 chr3 72283662 72283829 + 6.59734 NA Intergenic Intergenic 83337 NR_038221 201617 Hs.382623 NR_038221 ENSG00000243083 LINC00870 - long intergenic non-protein coding RNA 870 ncRNA 13-PTNLD9-TUMOR_peak_42931 chr5 168477437 168477588 + 6.59734 NA intron (NM_003062, intron 4 of 35) L2b|LINE|L2 37280 NR_109897 728095 Hs.145601 NR_109897 ENSG00000248222 CTB-174D11.1 - uncharacterized LOC728095 ncRNA 13-PTNLD9-TUMOR_peak_45303 chr6 52735246 52735458 + 6.59734 NA Intergenic Intergenic -24459 NM_153699 221357 Hs.646984 NM_153699 HPRD:09620 GSTA5 - glutathione S-transferase alpha 5 protein-coding 13-PTNLD9-TUMOR_peak_11141 chr11 108408918 108409099 + 6.59734 NA intron (NM_015065, intron 3 of 5) intron (NM_015065, intron 3 of 5) -39849 NM_153705 143888 Hs.83286 NM_153705 HPRD:13773 KDELC2 - KDEL (Lys-Asp-Glu-Leu) containing 2 protein-coding 13-PTNLD9-TUMOR_peak_26075 chr2 10084549 10084643 + 6.59734 NA Intergenic Intergenic -7196 NM_198182 29841 Hs.418493 NM_198182 HPRD:18176 GRHL1 LBP32|MGR|NH32|TFCP2L2 grainyhead-like 1 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_17670 chr15 75321756 75322128 + 6.59734 NA intron (NM_001301103, intron 2 of 3) intron (NM_001301103, intron 2 of 3) 6046 NM_001301103 60490 Hs.458922 NM_021823 HPRD:14377 PPCDC PPC-DC|coaC phosphopantothenoylcysteine decarboxylase protein-coding 13-PTNLD9-TUMOR_peak_14535 chr13 31151522 31151788 + 6.59734 NA Intergenic L2c|LINE|L2 -40175 NM_005800 10208 Hs.533831 NM_005800 HPRD:09833 USPL1 C13orf22|D13S106E|bA121O19.1 ubiquitin specific peptidase like 1 protein-coding 13-PTNLD9-TUMOR_peak_44948 chr6 40555379 40555563 + 6.59734 NA promoter-TSS (NM_020737) promoter-TSS (NM_020737) -345 NM_020737 57497 Hs.250015 NM_020737 HPRD:17444 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_30319 chr20 3678342 3678478 + 6.59734 NA intron (NM_023068, intron 8 of 20) intron (NM_023068, intron 8 of 20) 9365 NM_023068 6614 Hs.31869 NM_023068 HPRD:02854 SIGLEC1 CD169|SIGLEC-1|SN|dJ1009E24.1 sialic acid binding Ig-like lectin 1, sialoadhesin protein-coding 13-PTNLD9-TUMOR_peak_12161 chr12 12686286 12686455 + 6.59734 NA intron (NM_030640, intron 1 of 6) intron (NM_030640, intron 1 of 6) 29078 NM_030640 80824 Hs.536535 NM_030640 DUSP16 MKP-7|MKP7 dual specificity phosphatase 16 protein-coding 13-PTNLD9-TUMOR_peak_53974 chr9 93799565 93799679 + 6.59734 NA Intergenic Intergenic 37792 NR_033912 100129316 Hs.458154 NR_033912 LOC100129316 - uncharacterized LOC100129316 ncRNA 13-PTNLD9-TUMOR_peak_50217 chr8 19971412 19971601 + 6.59734 NA Intergenic Intergenic 69211 NM_001142325 6570 Hs.158322 NM_003053 HPRD:01897 SLC18A1 CGAT|VAT1|VMAT1 solute carrier family 18 (vesicular monoamine transporter), member 1 protein-coding 13-PTNLD9-TUMOR_peak_14579 chr13 34314268 34314453 + 6.59734 NA Intergenic Intergenic -63388 NM_001243476 90627 Hs.156551 NM_052851 HPRD:11607 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR-related lipid transfer (START) domain containing 13 protein-coding 13-PTNLD9-TUMOR_peak_390 chr1 10885082 10885257 + 6.59734 NA Intergenic Intergenic -28436 NM_017766 54897 Hs.439894 NM_017766 HPRD:07897 CASZ1 CAS11|CST|SRG|ZNF693|dJ734G22.1 castor zinc finger 1 protein-coding 13-PTNLD9-TUMOR_peak_2118 chr1 67526568 67526702 + 6.59734 NA Intergenic MER65B|LTR|ERV1 -6555 NM_015139 23169 Hs.213642 NM_015139 HPRD:15372 SLC35D1 UGTREL7 solute carrier family 35 (UDP-GlcA/UDP-GalNAc transporter), member D1 protein-coding 13-PTNLD9-TUMOR_peak_54366 chr9 110904998 110905258 + 6.59734 NA Intergenic Intergenic -653081 NM_004235 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel-like factor 4 (gut) protein-coding 13-PTNLD9-TUMOR_peak_41219 chr5 71624067 71624301 + 6.59734 NA intron (NM_001284404, intron 3 of 7) MLT1H|LTR|ERVL-MaLR 7990 NM_001284404 79810 Hs.126906 NM_024754 HPRD:15193 PTCD2 - pentatricopeptide repeat domain 2 protein-coding 13-PTNLD9-TUMOR_peak_43964 chr6 16805522 16805787 + 6.59734 NA Intergenic MER5B|DNA|hAT-Charlie -43933 NM_000332 6310 Hs.434961 NM_000332 HPRD:03333 ATXN1 ATX1|D6S504E|SCA1 ataxin 1 protein-coding 13-PTNLD9-TUMOR_peak_38792 chr4 85859633 85859727 + 6.59734 NA intron (NM_014991, intron 1 of 67) intron (NM_014991, intron 1 of 67) 27864 NM_014991 23001 Hs.480116 NM_014991 HPRD:10304 WDFY3 ALFY|ZFYVE25 WD repeat and FYVE domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_48332 chr7 93551102 93551208 + 6.59332 NA 5' UTR (NM_004126, exon 1 of 2) 5' UTR (NM_004126, exon 1 of 2) 139 NM_004126 2791 Hs.83381 NM_004126 GNG11 GNGT11 guanine nucleotide binding protein (G protein), gamma 11 protein-coding 13-PTNLD9-TUMOR_peak_20273 chr17 2901928 2902119 + 6.59332 NA intron (NM_015085, intron 14 of 24) intron (NM_015085, intron 14 of 24) -32834 NR_110818 101927911 Hs.626373 NR_110818 ENSG00000262884 LOC101927911 - uncharacterized LOC101927911 ncRNA 13-PTNLD9-TUMOR_peak_29952 chr2 228189830 228190008 + 6.59332 NA promoter-TSS (NM_001277061) promoter-TSS (NM_001277061) -39 NR_102371 654841 Hs.659982 NR_102371 ENSG00000236432 LOC654841 - uncharacterized LOC654841 ncRNA 13-PTNLD9-TUMOR_peak_26388 chr2 27504870 27505264 + 6.59332 NA promoter-TSS (NM_187841) promoter-TSS (NM_187841) -230 NM_187841 57159 Hs.516036 NM_032546 HPRD:05928 TRIM54 MURF|MURF-3|RNF30|muRF3 tripartite motif containing 54 protein-coding 13-PTNLD9-TUMOR_peak_42848 chr5 159510309 159510452 + 6.59332 NA intron (NM_052927, intron 2 of 3) intron (NM_052927, intron 2 of 3) 36072 NM_001130864 114825 Hs.744960 NM_052927 ENSG00000170234 PWWP2A MST101 PWWP domain containing 2A protein-coding 13-PTNLD9-TUMOR_peak_36658 chr3 169084315 169084569 + 6.59332 NA intron (NM_001205194, intron 1 of 15) intron (NM_001205194, intron 1 of 15) -218920 NM_001164000 2122 Hs.744090 NM_004991 HPRD:01310 MECOM AML1-EVI-1|EVI1|MDS1|MDS1-EVI1|PRDM3 MDS1 and EVI1 complex locus protein-coding 13-PTNLD9-TUMOR_peak_51192 chr8 81213564 81213690 + 6.59332 NA Intergenic Intergenic 60003 NR_049894 100847056 NR_049894 miRBase:MI0019316 MIR5708 - microRNA 5708 ncRNA 13-PTNLD9-TUMOR_peak_41715 chr5 110411292 110411498 + 6.59332 NA intron (NM_033035, intron 3 of 3) intron (NM_033035, intron 3 of 3) 2383 NM_138551 85480 Hs.389874 NM_033035 HPRD:06108 TSLP - thymic stromal lymphopoietin protein-coding 13-PTNLD9-TUMOR_peak_33279 chr22 39381066 39381393 + 6.59332 NA intron (NM_001270411, intron 2 of 7) AluSp|SINE|Alu 2825 NM_004900 9582 Hs.226307 NM_004900 HPRD:06169 APOBEC3B A3B|APOBEC1L|ARCD3|ARP4|DJ742C19.2|PHRBNL|bK150C2.2 apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B protein-coding 13-PTNLD9-TUMOR_peak_55905 chrX 54835056 54835339 + 6.59332 NA promoter-TSS (NM_201222) promoter-TSS (NM_201222) -296 NM_201222 10916 Hs.522665 NM_014599 HPRD:06630 MAGED2 11B6|BCG-1|BCG1|HCA10|MAGE-D2 melanoma antigen family D, 2 protein-coding 13-PTNLD9-TUMOR_peak_14749 chr13 49821959 49822060 + 6.59332 NA promoter-TSS (NM_001193478) promoter-TSS (NM_001193478) -38 NM_001193478 81602 Hs.388220 NM_030911 HPRD:16693 CDADC1 NYD-SP15|bA103J18.1 cytidine and dCMP deaminase domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_25565 chr19 53225734 53225918 + 6.59332 NA intron (NM_030972, intron 3 of 6) intron (NM_030972, intron 3 of 6) 7309 NM_030972 81856 Hs.143951 NM_030972 HPRD:15872 ZNF611 - zinc finger protein 611 protein-coding 13-PTNLD9-TUMOR_peak_23742 chr19 5173252 5173486 + 6.59332 NA Intergenic Charlie25|DNA|hAT-Charlie 167445 NM_002850 5802 Hs.744928 NM_002850 HPRD:03344 PTPRS PTPSIGMA protein tyrosine phosphatase, receptor type, S protein-coding 13-PTNLD9-TUMOR_peak_21696 chr17 60005281 60005440 + 6.59332 NA promoter-TSS (NR_026641) promoter-TSS (NR_026641) 17 NR_026641 57508 Hs.279646 NM_020748 HPRD:11137 INTS2 INT2|KIAA1287 integrator complex subunit 2 protein-coding 13-PTNLD9-TUMOR_peak_42921 chr5 167899508 167899602 + 6.59332 NA TTS (NM_001161661) TTS (NM_001161661) -13908 NM_002887 5917 Hs.654907 NM_002887 HPRD:00142 RARS ArgRS|DALRD1 arginyl-tRNA synthetase protein-coding 13-PTNLD9-TUMOR_peak_34240 chr3 36404733 36404837 + 6.59332 NA Intergenic MER4B-int|LTR|ERV1 -17194 NM_001292049 6769 Hs.56045 NM_003149 HPRD:11890 STAC STAC1 SH3 and cysteine rich domain protein-coding 13-PTNLD9-TUMOR_peak_29381 chr2 192066840 192067133 + 6.59332 NA Intergenic Intergenic -43121 NM_001130158 4430 Hs.439620 NM_012223 HPRD:08407 MYO1B myr1 myosin IB protein-coding 13-PTNLD9-TUMOR_peak_5041 chr1 202688850 202688955 + 6.59332 NA Intergenic Intergenic -9351 NM_177402 127833 Hs.25422 NM_177402 HPRD:02520 SYT2 SytII synaptotagmin II protein-coding 13-PTNLD9-TUMOR_peak_40013 chr4 186092624 186092734 + 6.59332 NA intron (NM_001292033, intron 3 of 3) intron (NM_001292033, intron 3 of 3) 28262 NM_001151 291 Hs.246506 NM_001151 HPRD:00058 SLC25A4 1|AAC1|ANT|ANT 1|ANT1|MTDPS12|PEO2|PEO3|T1 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4 protein-coding 13-PTNLD9-TUMOR_peak_44114 chr6 24321939 24322160 + 6.59182 NA intron (NM_016356, intron 2 of 9) MER67C|LTR|ERV1 -35082 NM_181337 353219 Hs.697888 NM_181337 HPRD:09741 KAAG1 RU2AS kidney associated antigen 1 protein-coding 13-PTNLD9-TUMOR_peak_54539 chr9 117279170 117279495 + 6.59182 NA Intergenic MLT1H2|LTR|ERVL-MaLR -11596 NM_015404 25861 Hs.93836 NM_015404 HPRD:09718 DFNB31 CIP98|PDZD7B|USH2D|WHRN|WI deafness, autosomal recessive 31 protein-coding 13-PTNLD9-TUMOR_peak_38872 chr4 89744441 89744621 + 6.59182 NA promoter-TSS (NM_001265580) promoter-TSS (NM_001265580) -19 NM_001265578 10144 Hs.97270 NM_014883 HPRD:10944 FAM13A ARHGAP48|FAM13A1 family with sequence similarity 13, member A protein-coding 13-PTNLD9-TUMOR_peak_43781 chr6 11434955 11435376 + 6.59182 NA Intergenic Intergenic -52584 NR_073131 4739 Hs.37982 NM_006403 HPRD:11888 NEDD9 CAS-L|CAS2|CASL|CASS2|HEF1 neural precursor cell expressed, developmentally down-regulated 9 protein-coding 13-PTNLD9-TUMOR_peak_15738 chr14 51302187 51302300 + 6.59182 NA Intergenic Intergenic -4404 NM_182946 51199 Hs.310429 NM_016350 HPRD:09785 NIN SCKL7 ninein (GSK3B interacting protein) protein-coding 13-PTNLD9-TUMOR_peak_25152 chr19 46144652 46144803 + 6.59182 NA promoter-TSS (NM_001242348) promoter-TSS (NM_001242348) -178 NM_001242348 100287177 Hs.668611 NM_001242348 ENSG00000267757 C19orf83 - chromosome 19 open reading frame 83 protein-coding 13-PTNLD9-TUMOR_peak_24163 chr19 14142589 14142799 + 6.59182 NA TTS (NM_080864) TTS (NM_080864) 142 NM_004843 9466 Hs.132781 NM_004843 HPRD:09247 IL27RA CRL1|IL-27RA|IL27R|TCCR|WSX1|zcytor1 interleukin 27 receptor, alpha protein-coding 13-PTNLD9-TUMOR_peak_18610 chr16 15583451 15583553 + 6.59182 NA intron (NM_033201, intron 1 of 5) intron (NM_033201, intron 1 of 5) -12621 NM_001142469 89927 Hs.401798 NM_033201 HPRD:12382 C16orf45 - chromosome 16 open reading frame 45 protein-coding 13-PTNLD9-TUMOR_peak_29389 chr2 192458379 192458609 + 6.59182 NA Intergenic Intergenic -84304 NM_001254736 64859 Hs.591610 NM_022837 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_19109 chr16 32753166 32753264 + 6.59182 NA Intergenic AluY|SINE|Alu -65765 NR_110910 24150 Hs.592038 NM_015369 TP53TG3 P53TG3|TP53TG3A TP53 target 3 protein-coding 13-PTNLD9-TUMOR_peak_36842 chr3 178100212 178100375 + 6.59182 NA Intergenic Intergenic -36696 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 13-PTNLD9-TUMOR_peak_2246 chr1 78469811 78469908 + 6.59182 NA promoter-TSS (NM_007034) promoter-TSS (NM_007034) -777 NM_007034 11080 Hs.13852 NM_007034 DNAJB4 DNAJW|DjB4|HLJ1 DnaJ (Hsp40) homolog, subfamily B, member 4 protein-coding 13-PTNLD9-TUMOR_peak_21304 chr17 45401655 45401804 + 6.59182 NA promoter-TSS (NR_110880) promoter-TSS (NR_110880) 402 NM_001195192 124989 Hs.463303 NM_152347 HPRD:08278 EFCAB13 C17orf57 EF-hand calcium binding domain 13 protein-coding 13-PTNLD9-TUMOR_peak_53155 chr9 36257891 36258100 + 6.59182 NA intron (NM_001128227, intron 1 of 11) intron (NM_001128227, intron 1 of 11) 501 NM_001190383 10020 Hs.5920 NM_005476 HPRD:04825 GNE DMRV|GLCNE|IBM2|NM|Uae1 glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase protein-coding 13-PTNLD9-TUMOR_peak_32696 chr22 18578053 18578152 + 6.58869 NA Intergenic Intergenic -15351 NM_018943 51807 Hs.137400 NM_018943 HPRD:05763 TUBA8 TUBAL2 tubulin, alpha 8 protein-coding 13-PTNLD9-TUMOR_peak_40233 chr5 6632729 6632994 + 6.58869 NA promoter-TSS (NM_001047) promoter-TSS (NM_001047) 612 NM_001193455 54888 Hs.481526 NM_017755 HPRD:08620 NSUN2 MISU|MRT5|SAKI|TRM4 NOP2/Sun RNA methyltransferase family, member 2 protein-coding 13-PTNLD9-TUMOR_peak_25123 chr19 45350838 45350969 + 6.58869 NA intron (NM_002856, intron 1 of 5) intron (NM_002856, intron 1 of 5) 1510 NM_001042724 5819 Hs.655455 NM_002856 HPRD:02879 PVRL2 CD112|HVEB|PRR2|PVRR2 poliovirus receptor-related 2 (herpesvirus entry mediator B) protein-coding 13-PTNLD9-TUMOR_peak_21738 chr17 61819753 61819952 + 6.58869 NA promoter-TSS (NM_001165969) promoter-TSS (NM_001165969) -522 NM_001003787 92335 Hs.514402 NM_153335 HPRD:14332 STRADA LYK5|NY-BR-96|PMSE|STRAD|Stlk STE20-related kinase adaptor alpha protein-coding 13-PTNLD9-TUMOR_peak_49251 chr7 135987922 135988065 + 6.58826 NA Intergenic Intergenic -325789 NM_001128619 767558 Hs.602015 NM_001128619 LUZP6 MPD6|MTPNUT leucine zipper protein 6 protein-coding 13-PTNLD9-TUMOR_peak_6691 chr10 24498375 24498574 + 6.58826 NA intron (NM_001282767, intron 1 of 18) intron (NM_001282767, intron 1 of 18) 754 NM_001282768 56243 Hs.445885 NM_019590 HPRD:11132 KIAA1217 SKT KIAA1217 protein-coding 13-PTNLD9-TUMOR_peak_49324 chr7 138785574 138785780 + 6.58826 NA intron (NM_024625, intron 1 of 8) SVA_C|Other|Other 8788 NM_020119 56829 Hs.133512 NM_020119 HPRD:09534 ZC3HAV1 ARTD13|FLB6421|PARP13|ZAP|ZC3H2|ZC3HDC2 zinc finger CCCH-type, antiviral 1 protein-coding 13-PTNLD9-TUMOR_peak_18044 chr15 98538539 98538692 + 6.58826 NA Intergenic Intergenic 34682 NM_183376 91947 Hs.6093 NM_183376 HPRD:10664 ARRDC4 - arrestin domain containing 4 protein-coding 13-PTNLD9-TUMOR_peak_30512 chr20 17790583 17791088 + 6.58826 NA Intergenic LTR16C|LTR|ERVL 110242 NM_001014977 140836 Hs.115366 NM_178477 HPRD:12759 BANF2 BAF-L|BAF2|BAFL|C20orf179 barrier to autointegration factor 2 protein-coding 13-PTNLD9-TUMOR_peak_48322 chr7 92745207 92745301 + 6.58826 NA intron (NM_017654, intron 1 of 2) intron (NM_017654, intron 1 of 2) 2082 NM_001193307 54809 Hs.65641 NM_017654 HPRD:11531 SAMD9 C7orf5|DRIF1|NFTC|OEF1|OEF2 sterile alpha motif domain containing 9 protein-coding 13-PTNLD9-TUMOR_peak_35575 chr3 122689095 122689277 + 6.58747 NA intron (NR_046079, intron 1 of 22) MER5A|DNA|hAT-Charlie 5795 NM_001256347 54437 Hs.210870 NM_018987 HPRD:15322 SEMA5B SEMAG|SemG sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B protein-coding 13-PTNLD9-TUMOR_peak_28808 chr2 157257580 157257707 + 6.57965 NA Intergenic Intergenic -34322 NM_001083112 2820 Hs.512382 NM_000408 HPRD:00715 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 (mitochondrial) protein-coding 13-PTNLD9-TUMOR_peak_18362 chr16 4378261 4378396 + 6.57965 NA promoter-TSS (NR_110901) promoter-TSS (NR_110901) 13 NR_110901 101926896 Hs.670300 NR_110901 LOC101926896 - uncharacterized LOC101926896 ncRNA 13-PTNLD9-TUMOR_peak_19077 chr16 31464062 31464278 + 6.57965 NA Intergenic Intergenic -5424 NM_001288767 79798 Hs.732945 NM_024742 HPRD:07809 ARMC5 - armadillo repeat containing 5 protein-coding 13-PTNLD9-TUMOR_peak_40160 chr5 891364 891510 + 6.57965 NA intron (NM_001009877, intron 2 of 15) intron (NM_001009877, intron 2 of 15) 1237 NM_001009877 65980 Hs.449278 NM_023924 HPRD:12532 BRD9 LAVS3040|PRO9856 bromodomain containing 9 protein-coding 13-PTNLD9-TUMOR_peak_18957 chr16 29833142 29833308 + 6.57965 NA 3' UTR (NM_024516, exon 3 of 3) 3' UTR (NM_024516, exon 3 of 3) 1510 NM_005115 9961 Hs.632177 NM_005115 HPRD:05475 MVP LRP|VAULT1 major vault protein protein-coding 13-PTNLD9-TUMOR_peak_9092 chr11 12204735 12204932 + 6.57965 NA intron (NM_001282665, intron 2 of 21) intron (NM_001282665, intron 2 of 21) 19603 NR_106739 102466906 NR_106739 MIR6124 hsa-mir-6124 microRNA 6124 ncRNA 13-PTNLD9-TUMOR_peak_5249 chr1 206282206 206282334 + 6.57532 NA intron (NM_001007544, intron 1 of 5) intron (NM_001007544, intron 1 of 5) 6377 NM_001007544 440712 Hs.662248 NM_001007544 C1orf186 - chromosome 1 open reading frame 186 protein-coding 13-PTNLD9-TUMOR_peak_116 chr1 2130749 2130955 + 6.56478 NA 5' UTR (NM_001282670, exon 4 of 8) 5' UTR (NM_001282670, exon 4 of 8) -4638 NR_046427 199990 Hs.107101 NM_182533 HPRD:08707 C1orf86 FAAP20|FP7162 chromosome 1 open reading frame 86 protein-coding 13-PTNLD9-TUMOR_peak_6817 chr10 30154730 30154886 + 6.56459 NA Intergenic Intergenic -130078 NM_003174 6840 Hs.499209 NM_003174 HPRD:04992 SVIL - supervillin protein-coding 13-PTNLD9-TUMOR_peak_1270 chr1 40236961 40237061 + 6.56459 NA promoter-TSS (NM_022120) promoter-TSS (NM_022120) 9 NM_022120 64064 Hs.472491 NM_022120 HPRD:15093 OXCT2 SCOTT 3-oxoacid CoA transferase 2 protein-coding 13-PTNLD9-TUMOR_peak_48937 chr7 127275866 127275960 + 6.55996 NA Intergenic Intergenic -16289 NM_014390 27044 Hs.122523 NM_014390 HPRD:03714 SND1 TDRD11|p100 staphylococcal nuclease and tudor domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_29383 chr2 192110000 192110199 + 6.55996 NA promoter-TSS (NM_012223) promoter-TSS (NM_012223) -8 NM_001130158 4430 Hs.439620 NM_012223 HPRD:08407 MYO1B myr1 myosin IB protein-coding 13-PTNLD9-TUMOR_peak_49727 chr7 152634472 152634619 + 6.55996 NA Intergenic Intergenic 177711 NR_073000 57180 Hs.647117 NM_020445 HPRD:12489 ACTR3B ARP11|ARP3BETA ARP3 actin-related protein 3 homolog B (yeast) protein-coding 13-PTNLD9-TUMOR_peak_43350 chr5 180527414 180527531 + 6.55996 NA Intergenic CpG 24832 NM_001258283 26693 Hs.742585 NM_001258283 ENSG00000185372 OR2V1 OR2V1P|OST265 olfactory receptor, family 2, subfamily V, member 1 protein-coding 13-PTNLD9-TUMOR_peak_49355 chr7 139542287 139542473 + 6.55996 NA intron (NR_029394, intron 1 of 12) intron (NR_029394, intron 1 of 12) 13428 NR_029394 6916 Hs.520757 NM_001061 HPRD:02035 TBXAS1 BDPLT14|CYP5|CYP5A1|GHOSAL|THAS|TS|TXAS|TXS thromboxane A synthase 1 (platelet) protein-coding 13-PTNLD9-TUMOR_peak_31348 chr20 47863162 47863256 + 6.55996 NA 3' UTR (NM_021035, exon 14 of 14) 3' UTR (NM_021035, exon 14 of 14) 27377 NM_017895 55661 Hs.65234 NM_017895 HPRD:10859 DDX27 DRS1|Drs1p|PP3241|RHLP|dJ686N3.1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 protein-coding 13-PTNLD9-TUMOR_peak_43076 chr5 173164151 173164352 + 6.55996 NA intron (NR_108027, intron 1 of 2) intron (NR_108027, intron 1 of 2) 8961 NR_108027 101928136 Hs.449267 NR_108027 LINC01484 - long intergenic non-protein coding RNA 1484 ncRNA 13-PTNLD9-TUMOR_peak_20728 chr17 25676187 25676328 + 6.55996 NA Intergenic MER52D|LTR|ERV1 55151 NM_134265 26118 Hs.446017 NM_015626 HPRD:15680 WSB1 SWIP1|WSB-1 WD repeat and SOCS box containing 1 protein-coding 13-PTNLD9-TUMOR_peak_43957 chr6 16726491 16726593 + 6.55996 NA intron (NM_001128164, intron 2 of 7) AluSz6|SINE|Alu 35179 NM_001128164 6310 Hs.434961 NM_000332 HPRD:03333 ATXN1 ATX1|D6S504E|SCA1 ataxin 1 protein-coding 13-PTNLD9-TUMOR_peak_32608 chr21 47563780 47563876 + 6.55956 NA intron (NM_006657, intron 10 of 14) LTR13|LTR|ERVK 11653 NM_006657 10841 Hs.415846 NM_006657 HPRD:08430 FTCD LCHC1 formimidoyltransferase cyclodeaminase protein-coding 13-PTNLD9-TUMOR_peak_24627 chr19 30174081 30174186 + 6.55956 NA Intergenic Intergenic 17806 NM_024310 79156 Hs.466383 NM_024310 HPRD:15146 PLEKHF1 APPD|LAPF|PHAFIN1|ZFYVE15 pleckstrin homology domain containing, family F (with FYVE domain) member 1 protein-coding 13-PTNLD9-TUMOR_peak_15880 chr14 58213895 58214018 + 6.55956 NA intron (NM_001206920, intron 1 of 7) intron (NM_001206920, intron 1 of 7) 118636 NM_001206920 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35, member F4 protein-coding 13-PTNLD9-TUMOR_peak_53881 chr9 90113176 90113410 + 6.55956 NA promoter-TSS (NM_001288729) promoter-TSS (NM_001288729) -157 NM_001288729 1612 Hs.380277 NM_004938 HPRD:02902 DAPK1 DAPK death-associated protein kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_7247 chr10 47371292 47371397 + 6.55956 NA Intergenic Intergenic -8376 NR_027634 439965 Hs.283521 NR_027634 FAM35DP FAM35B2 family with sequence similarity 35, member A pseudogene pseudo 13-PTNLD9-TUMOR_peak_41728 chr5 111083175 111083298 + 6.55956 NA intron (NM_001142474, intron 2 of 3) intron (NM_001142474, intron 2 of 3) 8712 NM_001142483 9315 Hs.36053 NM_004772 HPRD:09545 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 13-PTNLD9-TUMOR_peak_13227 chr12 67714632 67714751 + 6.55956 NA Intergenic LTR39|LTR|ERV1 51630 NM_018448 55832 Hs.546407 NM_018448 CAND1 TIP120|TIP120A cullin-associated and neddylation-dissociated 1 protein-coding 13-PTNLD9-TUMOR_peak_37073 chr3 186587241 186587538 + 6.55956 NA Intergenic Intergenic -13477 NR_046662 100874095 Hs.80485 NR_046662 ENSG00000226482 ADIPOQ-AS1 - ADIPOQ antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_27077 chr2 64871542 64871723 + 6.55838 NA intron (NM_014755, intron 1 of 1) intron (NM_014755, intron 1 of 1) 9414 NM_014755 9792 Hs.591569 NM_014755 HPRD:18040 SERTAD2 Sei-2|TRIP-Br2 SERTA domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_46969 chr7 18554449 18554555 + 6.55838 NA intron (NM_001204148, intron 1 of 10) AluJr|SINE|Alu 5602 NM_001204148 9734 Hs.196054 NM_014707 HPRD:05944 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 13-PTNLD9-TUMOR_peak_33728 chr3 10240434 10240560 + 6.55838 NA intron (NM_001570, intron 2 of 12) intron (NM_001570, intron 2 of 12) 33934 NM_001570 3656 Hs.449207 NM_001570 HPRD:04491 IRAK2 IRAK-2 interleukin-1 receptor-associated kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_52692 chr9 5879637 5879800 + 6.55838 NA Intergenic Intergenic -11191 NM_005511 2315 Hs.154069 NM_005511 MLANA MART-1|MART1 melan-A protein-coding 13-PTNLD9-TUMOR_peak_52253 chr8 138346994 138347101 + 6.55838 NA Intergenic MIRb|SINE|MIR 78784 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 13-PTNLD9-TUMOR_peak_7140 chr10 43362242 43362336 + 6.55838 NA Intergenic CpG 84335 NM_014753 9790 Hs.10848 NM_014753 HPRD:10689 BMS1 ACC|BMS1L BMS1 ribosome biogenesis factor protein-coding 13-PTNLD9-TUMOR_peak_42379 chr5 141025815 141025998 + 6.55838 NA intron (NM_033449, intron 11 of 19) MIR|SINE|MIR 5080 NM_033449 89848 Hs.591257 NM_033449 HPRD:13320 FCHSD1 NWK2 FCH and double SH3 domains 1 protein-coding 13-PTNLD9-TUMOR_peak_40969 chr5 57706457 57706551 + 6.55838 NA Intergenic Intergenic 49462 NM_006622 10769 Hs.398157 NM_006622 HPRD:06118 PLK2 SNK|hPlk2|hSNK polo-like kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_22809 chr18 22204498 22204602 + 6.55838 NA Intergenic L1PA2|LINE|L1 -3596 NR_040033 729950 Hs.585850 NR_040033 ENSG00000265485 LOC729950 - uncharacterized LOC729950 ncRNA 13-PTNLD9-TUMOR_peak_32111 chr21 32670730 32670969 + 6.55838 NA intron (NM_003253, intron 3 of 28) intron (NM_003253, intron 3 of 28) -260054 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 13-PTNLD9-TUMOR_peak_34803 chr3 61547073 61547334 + 6.55838 NA promoter-TSS (NM_002841) promoter-TSS (NM_002841) -40 NM_002841 5793 Hs.595541 NM_002841 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase, receptor type, G protein-coding 13-PTNLD9-TUMOR_peak_1161 chr1 37075009 37075111 + 6.55838 NA Intergenic Intergenic -126145 NM_156039 1441 Hs.524517 NM_000760 HPRD:00737 CSF3R CD114|GCSFR colony stimulating factor 3 receptor (granulocyte) protein-coding 13-PTNLD9-TUMOR_peak_23327 chr18 57183692 57183824 + 6.55838 NA intron (NM_133459, intron 2 of 10) intron (NM_133459, intron 2 of 10) -157250 NM_005570 3998 Hs.465295 NM_005570 HPRD:03338 LMAN1 ERGIC-53|ERGIC53|F5F8D|FMFD1|MCFD1|MR60|gp58 lectin, mannose-binding, 1 protein-coding 13-PTNLD9-TUMOR_peak_52303 chr8 141129216 141129401 + 6.55838 NA intron (NM_031466, intron 17 of 22) intron (NM_031466, intron 17 of 22) 338553 NM_001160372 83696 Hs.654911 NM_031466 HPRD:18136 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|TRS120 trafficking protein particle complex 9 protein-coding 13-PTNLD9-TUMOR_peak_41737 chr5 111581389 111581554 + 6.55838 NA intron (NM_022140, intron 9 of 22) intron (NM_022140, intron 9 of 22) 17491 NR_110559 101927023 Hs.571002 NR_110559 LOC101927023 - uncharacterized LOC101927023 ncRNA 13-PTNLD9-TUMOR_peak_39388 chr4 138676205 138676317 + 6.55838 NA Intergenic Intergenic -222609 NM_001300828 54510 Hs.591691 NM_019035 HPRD:12205 PCDH18 PCDH68L protocadherin 18 protein-coding 13-PTNLD9-TUMOR_peak_6819 chr10 30246748 30247164 + 6.55838 NA Intergenic Intergenic 101532 NM_020848 57608 Hs.533953 NM_020848 ENSG00000165757 KIAA1462 JCAD KIAA1462 protein-coding 13-PTNLD9-TUMOR_peak_26686 chr2 42396361 42396611 + 6.55838 NA promoter-TSS (NM_001145076) promoter-TSS (NM_001145076) -4 NM_001145076 27436 Hs.713173 NM_019063 HPRD:06310 EML4 C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120 echinoderm microtubule associated protein like 4 protein-coding 13-PTNLD9-TUMOR_peak_51946 chr8 127584276 127584383 + 6.55838 NA Intergenic Intergenic -13618 NM_174911 157638 Hs.741352 NM_174911 HPRD:11403 FAM84B BCMP101|NSE2 family with sequence similarity 84, member B protein-coding 13-PTNLD9-TUMOR_peak_51756 chr8 120941827 120941922 + 6.55805 NA intron (NM_022783, intron 2 of 8) MIR|SINE|MIR 55979 NM_022783 64798 Hs.112981 NM_022783 HPRD:13137 DEPTOR DEP.6|DEPDC6 DEP domain containing MTOR-interacting protein protein-coding 13-PTNLD9-TUMOR_peak_31068 chr20 39676688 39676782 + 6.55805 NA intron (NM_003286, intron 2 of 20) AT_rich|Low_complexity|Low_complexity 19273 NM_003286 7150 Hs.472737 NM_003286 HPRD:00535 TOP1 TOPI topoisomerase (DNA) I protein-coding 13-PTNLD9-TUMOR_peak_47223 chr7 34503518 34503722 + 6.55805 NA intron (NR_033665, intron 2 of 3) L1MC3|LINE|L1 -194231 NM_001300934 387129 Hs.652373 NM_207172 HPRD:10547 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_34019 chr3 19617874 19618101 + 6.55805 NA Intergenic Intergenic -261564 NR_039954 100616291 NR_039954 miRBase:MI0017438 MIR4791 - microRNA 4791 ncRNA 13-PTNLD9-TUMOR_peak_26599 chr2 37763471 37763571 + 6.55805 NA Intergenic Intergenic 135821 NM_006449 10602 Hs.369574 NM_006449 HPRD:09364 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein (Rho GTPase binding) 3 protein-coding 13-PTNLD9-TUMOR_peak_16860 chr15 28397223 28397322 + 6.55805 NA intron (NM_004667, intron 70 of 92) intron (NM_004667, intron 70 of 92) -52814 NM_000275 4948 Hs.654411 NM_000275 HPRD:01945 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 oculocutaneous albinism II protein-coding 13-PTNLD9-TUMOR_peak_23100 chr18 45645711 45645873 + 6.55805 NA intron (NM_001039360, intron 1 of 2) intron (NM_001039360, intron 1 of 2) 17888 NM_001039360 201501 Hs.515388 NM_001039360 ENSG00000184828 ZBTB7C APM-1|APM1|ZBTB36|ZNF857C zinc finger and BTB domain containing 7C protein-coding 13-PTNLD9-TUMOR_peak_54943 chr9 134278257 134278486 + 6.55805 NA Intergenic Intergenic -27106 NM_013318 84726 Hs.743955 NM_013318 ENSG00000130723 PRRC2B BAT2L|BAT2L1|KIAA0515|LQFBS-1 proline-rich coiled-coil 2B protein-coding 13-PTNLD9-TUMOR_peak_26516 chr2 31652663 31652954 + 6.55805 NA Intergenic Intergenic -15197 NM_000379 7498 Hs.250 NM_000379 HPRD:06363 XDH XO|XOR xanthine dehydrogenase protein-coding 13-PTNLD9-TUMOR_peak_23408 chr18 64462474 64462629 + 6.55805 NA Intergenic Intergenic -191176 NM_001271028 28513 Hs.42771 NM_021153 HPRD:04311 CDH19 CDH7|CDH7L2 cadherin 19, type 2 protein-coding 13-PTNLD9-TUMOR_peak_29263 chr2 182537980 182538177 + 6.55805 NA Intergenic Intergenic 7314 NM_002500 4760 Hs.574626 NM_002500 HPRD:03428 NEUROD1 BETA2|BHF-1|MODY6|NEUROD|bHLHa3 neuronal differentiation 1 protein-coding 13-PTNLD9-TUMOR_peak_160 chr1 3370916 3371089 + 6.55805 NA promoter-TSS (NM_014448) promoter-TSS (NM_014448) -145 NM_014448 27237 Hs.87435 NM_014448 HPRD:12478 ARHGEF16 GEF16|NBR Rho guanine nucleotide exchange factor (GEF) 16 protein-coding 13-PTNLD9-TUMOR_peak_23239 chr18 53730214 53730379 + 6.55805 NA Intergenic MIRb|SINE|MIR 74471 NR_040026 100505474 Hs.662191 NR_040025 ENSG00000267712 LOC100505474 - uncharacterized LOC100505474 ncRNA 13-PTNLD9-TUMOR_peak_32036 chr21 27335708 27335820 + 6.55805 NA intron (NM_001136130, intron 10 of 16) intron (NM_001136130, intron 10 of 16) 176944 NM_001136016 351 Hs.434980 NM_000484 HPRD:00100 APP AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2 amyloid beta (A4) precursor protein protein-coding 13-PTNLD9-TUMOR_peak_30014 chr2 232513434 232513531 + 6.55805 NA Intergenic Intergenic 55907 NM_152614 165100 Hs.98104 NM_152614 HPRD:14602 C2orf57 - chromosome 2 open reading frame 57 protein-coding 13-PTNLD9-TUMOR_peak_2730 chr1 109262665 109262844 + 6.55805 NA intron (NM_001144937, intron 4 of 12) intron (NM_001144937, intron 4 of 12) 7198 NM_001144937 163479 Hs.258253 NM_173532 HPRD:08195 FNDC7 - fibronectin type III domain containing 7 protein-coding 13-PTNLD9-TUMOR_peak_6597 chr10 17798851 17799044 + 6.55805 NA intron (NM_001098844, intron 1 of 3) intron (NM_001098844, intron 1 of 3) 4687 NM_001098844 653567 Hs.564139 NM_001013629 ENSG00000148483 TMEM236 FAM23A|FAM23B|bA162I21.2|bA16O1.2 transmembrane protein 236 protein-coding 13-PTNLD9-TUMOR_peak_7955 chr10 89195997 89196158 + 6.55805 NA Intergenic Intergenic -28620 NR_046091 728218 Hs.713428 NR_046091 LINC00864 - long intergenic non-protein coding RNA 864 ncRNA 13-PTNLD9-TUMOR_peak_15973 chr14 62138872 62138966 + 6.55805 NA Intergenic LTR10D|LTR|ERV1 -23200 NM_181054 3091 Hs.597216 NM_001530 HPRD:04517 HIF1A HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78 hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) protein-coding 13-PTNLD9-TUMOR_peak_17742 chr15 78956066 78956267 + 6.55805 NA Intergenic AluJb|SINE|Alu -22579 NM_001256567 1143 Hs.624178 NM_000750 HPRD:00337 CHRNB4 - cholinergic receptor, nicotinic, beta 4 (neuronal) protein-coding 13-PTNLD9-TUMOR_peak_8075 chr10 97667503 97667725 + 6.55805 NA promoter-TSS (NM_001130446) promoter-TSS (NM_001130446) -108 NM_001130446 100127889 Hs.719076 NM_001098847 ENSG00000173088 C10orf131 bA690P14.3 chromosome 10 open reading frame 131 protein-coding 13-PTNLD9-TUMOR_peak_39759 chr4 159434483 159434640 + 6.55805 NA Intergenic Intergenic -8305 NM_001253730 59350 Hs.591686 NM_021634 HPRD:05975 RXFP1 LGR7|RXFPR1 relaxin/insulin-like family peptide receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_10095 chr11 62607765 62607998 + 6.55636 NA promoter-TSS (NM_018093) promoter-TSS (NM_018093) -253 NM_018093 54663 Hs.654620 NM_018093 HPRD:08548 WDR74 - WD repeat domain 74 protein-coding 13-PTNLD9-TUMOR_peak_52408 chr8 144105542 144105680 + 6.55580 NA Intergenic Intergenic 5709 NM_002346 4061 Hs.521903 NM_002346 HPRD:03227 LY6E RIG-E|RIGE|SCA-2|SCA2|TSA-1 lymphocyte antigen 6 complex, locus E protein-coding 13-PTNLD9-TUMOR_peak_48376 chr7 95950683 95951098 + 6.55580 NA intron (NR_027662, intron 1 of 16) CpG 569 NM_014251 10165 Hs.489190 NM_014251 HPRD:04837 SLC25A13 ARALAR2|CITRIN|CTLN2 solute carrier family 25 (aspartate/glutamate carrier), member 13 protein-coding 13-PTNLD9-TUMOR_peak_32509 chr21 45158443 45158621 + 6.55580 NA intron (NM_003681, intron 2 of 10) LTR14|LTR|ERVK 19554 NM_003681 8566 Hs.284491 NM_003681 HPRD:01526 PDXK C21orf124|C21orf97|HEL-S-1a|PKH|PNK pyridoxal (pyridoxine, vitamin B6) kinase protein-coding 13-PTNLD9-TUMOR_peak_1383 chr1 42132806 42132938 + 6.55580 NA intron (NM_001127714, intron 1 of 7) L2c|LINE|L2 -182528 NM_001956 1907 Hs.1407 NM_001956 HPRD:07173 EDN2 ET2|PPET2 endothelin 2 protein-coding 13-PTNLD9-TUMOR_peak_11985 chr12 6643094 6643300 + 6.55471 NA promoter-TSS (NM_002046) promoter-TSS (NM_002046) -374 NM_001289745 2597 Hs.544577 NM_002046 HPRD:00713 GAPDH G3PD|GAPD|HEL-S-162eP glyceraldehyde-3-phosphate dehydrogenase protein-coding 13-PTNLD9-TUMOR_peak_29541 chr2 202015958 202016088 + 6.55460 NA intron (NR_040030, intron 2 of 6) intron (NR_040030, intron 2 of 6) 6492 NR_040030 65072 Hs.664613 NR_040030 ENSG00000226312 CFLAR-AS1 ALS2CR10 CFLAR antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_10921 chr11 93475185 93475317 + 6.55460 NA promoter-TSS (NM_024116) promoter-TSS (NM_024116) 491 NM_001286068 28970 Hs.8360 NM_014039 HPRD:17923 C11orf54 PTD012|PTOD012 chromosome 11 open reading frame 54 protein-coding 13-PTNLD9-TUMOR_peak_24991 chr19 41076072 41076189 + 6.55460 NA intron (NM_020971, intron 32 of 35) intron (NM_020971, intron 32 of 35) -6627 NM_138392 92799 Hs.26506 NM_138392 HPRD:15338 SHKBP1 Sb1 SH3KBP1 binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_6724 chr10 25305134 25305250 + 6.55460 NA promoter-TSS (NM_024838) promoter-TSS (NM_024838) -107 NR_072992 219670 Hs.534486 NM_145010 HPRD:12583 ENKUR C10orf63|CFAP106 enkurin, TRPC channel interacting protein protein-coding 13-PTNLD9-TUMOR_peak_24804 chr19 36627234 36627363 + 6.55460 NA Intergenic AluJo|SINE|Alu -3620 NM_001003962 826 Hs.515371 NM_001749 HPRD:00240 CAPNS1 30K|CALPAIN4|CANP|CANPS|CAPN4|CDPS|CSS1 calpain, small subunit 1 protein-coding 13-PTNLD9-TUMOR_peak_21335 chr17 46045375 46045580 + 6.54386 NA Intergenic L2c|LINE|L2 -2417 NM_001278197 80279 Hs.20157 NM_025197 HPRD:12190 CDK5RAP3 C53|HSF-27|IC53|LZAP|MST016|OK/SW-cl.114|PP1553 CDK5 regulatory subunit associated protein 3 protein-coding 13-PTNLD9-TUMOR_peak_18350 chr16 4321278 4321374 + 6.54176 NA intron (NM_003223, intron 1 of 6) CpG 1675 NM_003223 7023 Hs.513305 NM_003223 HPRD:11795 TFAP4 AP-4|bHLHc41 transcription factor AP-4 (activating enhancer binding protein 4) protein-coding 13-PTNLD9-TUMOR_peak_1101 chr1 36397038 36397178 + 6.54176 NA intron (NM_177422, intron 1 of 16) CpG 425 NM_177422 192669 Hs.657659 NM_024852 HPRD:09558 AGO3 EIF2C3 argonaute RISC catalytic component 3 protein-coding 13-PTNLD9-TUMOR_peak_35954 chr3 132440775 132440875 + 6.54176 NA promoter-TSS (NR_002811) promoter-TSS (NR_002811) -361 NR_002811 348808 Hs.586111 NR_002811 ENSG00000248724 NPHP3-AS1 NCRNA00119 NPHP3 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_6815 chr10 30151214 30151313 + 6.54176 NA Intergenic Intergenic -126533 NM_003174 6840 Hs.499209 NM_003174 HPRD:04992 SVIL - supervillin protein-coding 13-PTNLD9-TUMOR_peak_1844 chr1 54695245 54695518 + 6.54176 NA intron (NM_145716, intron 14 of 17) intron (NM_145716, intron 14 of 17) -6735 NR_103541 619518 Hs.591438 NM_001034847 SSBP3-AS1 C1orf191|MST128 SSBP3 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_25874 chr1_gl000192_random 15104 15251 + 6.53497 NA Intergenic Intergenic 392333 NR_103556 100288805 Hs.648712 NR_049745 HYDIN2 HYDINP1 HYDIN2, axonemal central pair apparatus protein (pseudogene) pseudo 13-PTNLD9-TUMOR_peak_49549 chr7 148396294 148396417 + 6.53497 NA intron (NM_003592, intron 1 of 21) CpG 422 NM_003592 8454 Hs.146806 NM_003592 HPRD:04389 CUL1 - cullin 1 protein-coding 13-PTNLD9-TUMOR_peak_42743 chr5 154137694 154137823 + 6.53497 NA intron (NM_015315, intron 1 of 18) intron (NM_015315, intron 1 of 18) 45296 NM_015315 23367 Hs.292078 NM_015315 HPRD:11225 LARP1 LARP La ribonucleoprotein domain family, member 1 protein-coding 13-PTNLD9-TUMOR_peak_32221 chr21 36262021 36262248 + 6.53497 NA intron (NM_001754, intron 3 of 8) CpG -1147 NM_001001890 861 Hs.149261 NM_001754 HPRD:01043 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBFA2|EVI-1|PEBP2aB runt-related transcription factor 1 protein-coding 13-PTNLD9-TUMOR_peak_43473 chr6 2841600 2841830 + 6.53497 NA intron (NR_073111, intron 1 of 7) intron (NR_073111, intron 1 of 7) 568 NR_073111 1992 Hs.381167 NM_030666 HPRD:00555 SERPINB1 EI|ELANH2|HEL57|LEI|M/NEI|MNEI|PI-2|PI2 serpin peptidase inhibitor, clade B (ovalbumin), member 1 protein-coding 13-PTNLD9-TUMOR_peak_48641 chr7 102135290 102135518 + 6.53171 NA exon (NM_001277335, exon 13 of 20) exon (NM_001277335, exon 13 of 20) -16023 NM_006234 5439 Hs.654952 NM_006234 HPRD:16038 POLR2J POLR2J1|RPB11|RPB11A|RPB11m|hRPB14 polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa protein-coding 13-PTNLD9-TUMOR_peak_25676 chr19 55728379 55728543 + 6.53159 NA Intergenic CpG -7587 NM_001161440 5794 Hs.179770 NM_002842 HPRD:03942 PTPRH R-PTP-H|SAP1 protein tyrosine phosphatase, receptor type, H protein-coding 13-PTNLD9-TUMOR_peak_44427 chr6 30043584 30043686 + 6.53159 NA promoter-TSS (NM_025236).2 promoter-TSS (NM_025236).2 -7 NM_025236 80352 Hs.121178 NM_025236 HPRD:09600 RNF39 HZF|HZFW|LIRF ring finger protein 39 protein-coding 13-PTNLD9-TUMOR_peak_31050 chr20 39190769 39190868 + 6.53159 NA Intergenic Intergenic 127062 NM_005461 9935 Hs.169487 NM_005461 HPRD:07129 MAFB KRML|MCTO v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog B protein-coding 13-PTNLD9-TUMOR_peak_33295 chr22 39704922 39705021 + 6.53159 NA Intergenic Tigger7|DNA|TcMar-Tigger 4945 NR_000028 116938 NR_000028 SNORD83B RNU83B|U83B small nucleolar RNA, C/D box 83B snoRNA 13-PTNLD9-TUMOR_peak_14697 chr13 45151823 45152128 + 6.53159 NA intron (NR_038381, intron 2 of 2) CpG-6410 -1274 NM_183422 8848 Hs.436383 NM_006022 TSC22D1 Ptg-2|TGFB1I4|TSC22 TSC22 domain family, member 1 protein-coding 13-PTNLD9-TUMOR_peak_25422 chr19 50554339 50554467 + 6.52932 NA non-coding (NR_027257, exon 1 of 3) non-coding (NR_027257, exon 1 of 3) 466 NR_027257 400710 Hs.628968 NM_001001687 HPRD:16927 FLJ26850 - FLJ26850 protein ncRNA 13-PTNLD9-TUMOR_peak_33049 chr22 29138369 29138700 + 6.52932 NA promoter-TSS (NM_145862) promoter-TSS (NM_145862) 491 NM_172002 150274 Hs.632780 NM_172002 HPRD:16289 HSCB DNAJC20|HSC20|JAC1|dJ366L4.2 HscB mitochondrial iron-sulfur cluster co-chaperone protein-coding 13-PTNLD9-TUMOR_peak_25276 chr19 48610754 48611048 + 6.52932 NA intron (NM_003706, intron 1 of 16) LTR13|LTR|ERVK 3208 NM_001159322 8605 Hs.631562 NM_003706 HPRD:04673 PLA2G4C CPLA2-gamma phospholipase A2, group IVC (cytosolic, calcium-independent) protein-coding 13-PTNLD9-TUMOR_peak_11371 chr11 118479225 118479377 + 6.52932 NA intron (NM_001144759, intron 1 of 20) CpG 995 NM_001144758 23187 Hs.504062 NM_015157 HPRD:15128 PHLDB1 LL5A pleckstrin homology-like domain, family B, member 1 protein-coding 13-PTNLD9-TUMOR_peak_30337 chr20 4041196 4041292 + 6.52932 NA Intergenic LTR16E2|LTR|ERVL -45028 NM_001134338 11237 Hs.589884 NM_007219 HPRD:10198 RNF24 G1L ring finger protein 24 protein-coding 13-PTNLD9-TUMOR_peak_33464 chr22 46812960 46813078 + 6.52932 NA intron (NM_014246, intron 5 of 34) intron (NM_014246, intron 5 of 34) 81721 NM_001282783 55687 Hs.439524 NM_018006 HPRD:15571 TRMU MTO2|MTU1|TRMT|TRMT1|TRNT1 tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase protein-coding 13-PTNLD9-TUMOR_peak_52729 chr9 8078672 8079022 + 6.52932 NA Intergenic Intergenic -279048 NM_033428 90871 Hs.7517 NM_033428 HPRD:12939 TMEM261 C9orf123 transmembrane protein 261 protein-coding 13-PTNLD9-TUMOR_peak_1095 chr1 36107549 36107789 + 6.52932 NA promoter-TSS (NM_002794) promoter-TSS (NM_002794) -224 NM_002794 5690 Hs.471441 NM_002794 PSMB2 HC7-I proteasome (prosome, macropain) subunit, beta type, 2 protein-coding 13-PTNLD9-TUMOR_peak_53780 chr9 85104099 85104200 + 6.52932 NA Intergenic Intergenic 500462 NM_001001670 389763 Hs.209545 NM_001001670 HPRD:13531 SPATA31D1 FAM75D1 SPATA31 subfamily D, member 1 protein-coding 13-PTNLD9-TUMOR_peak_38831 chr4 88015067 88015169 + 6.52932 NA intron (NM_001166693, intron 7 of 20) L2c|LINE|L2 86965 NM_005935 4299 Hs.480190 NM_005935 HPRD:08871 AFF1 AF4|MLLT2|PBM1 AF4/FMR2 family, member 1 protein-coding 13-PTNLD9-TUMOR_peak_37156 chr3 188622657 188622752 + 6.52932 NA Intergenic AluSg|SINE|Alu 42724 NR_046873 100874043 Hs.616287 NR_046873 TPRG1-AS1 - TPRG1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_49641 chr7 150777217 150777332 + 6.52932 NA TTS (NM_031434) TTS (NM_031434) 696 NM_001258461 10922 Hs.647094 NM_006712 HPRD:07368 FASTK FAST Fas-activated serine/threonine kinase protein-coding 13-PTNLD9-TUMOR_peak_42533 chr5 147326482 147326636 + 6.52871 NA Intergenic L1PA3|LINE|L1 -40458 NM_206966 389336 Hs.660038 NM_206966 HPRD:14491 C5orf46 SSSP1 chromosome 5 open reading frame 46 protein-coding 13-PTNLD9-TUMOR_peak_957 chr1 32135573 32135696 + 6.52871 NA intron (NM_001856, intron 49 of 70) intron (NM_001856, intron 49 of 70) -24796 NR_033686 553115 Hs.470417 NM_012392 HPRD:10143 PEF1 ABP32|PEF1A penta-EF-hand domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_6289 chr10 3133692 3133905 + 6.52871 NA intron (NM_001242339, intron 3 of 23) AluSz|SINE|Alu 22979 NM_001242339 5214 Hs.26010 NM_002627 HPRD:01384 PFKP ATP-PFK|PFK-C|PFK-P|PFKF phosphofructokinase, platelet protein-coding 13-PTNLD9-TUMOR_peak_30721 chr20 30133373 30133777 + 6.52871 NA intron (NM_178580, intron 4 of 12) AluSz6|SINE|Alu -1610 NR_003677 100101490 Hs.373741 NR_003677 MCTS2P MCTS2|PSIMCT-1 malignant T cell amplified sequence 2, pseudogene pseudo 13-PTNLD9-TUMOR_peak_31724 chr20 57586312 57586406 + 6.52871 NA Intergenic Intergenic -4050 NM_001336 1522 Hs.252549 NM_001336 HPRD:04410 CTSZ CTSX cathepsin Z protein-coding 13-PTNLD9-TUMOR_peak_18912 chr16 29126906 29127046 + 6.52353 NA intron (NR_003369, intron 16 of 16) intron (NR_003369, intron 16 of 16) 40813 NR_003369 653390 Hs.720348 NR_003369 ENSG00000103472 RRN3P2 - RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_17761 chr15 80189029 80189149 + 6.52353 NA intron (NM_001199760, intron 2 of 3) CpG 250 NR_037654 10588 Hs.194294 NM_006441 MTHFS HsT19268 5,10-methenyltetrahydrofolate synthetase (5-formyltetrahydrofolate cyclo-ligase) protein-coding 13-PTNLD9-TUMOR_peak_47354 chr7 44303864 44303984 + 6.52353 NA intron (NM_001293170, intron 2 of 20) intron (NM_001293170, intron 2 of 20) 61306 NM_172079 816 Hs.351887 NM_001220 HPRD:12127 CAMK2B CAM2|CAMK2|CAMKB calcium/calmodulin-dependent protein kinase II beta protein-coding 13-PTNLD9-TUMOR_peak_33066 chr22 29811017 29811167 + 6.52353 NA Intergenic HERVIP10FH-int|LTR|ERV1 -23480 NM_021026 5988 Hs.648249 NM_021026 HPRD:16182 RFPL1 RNF78 ret finger protein-like 1 protein-coding 13-PTNLD9-TUMOR_peak_22002 chr17 73562614 73562757 + 6.52353 NA intron (NM_001031803, intron 10 of 25) MER58A|DNA|hAT-Charlie -21454 NR_003587 80022 Hs.390817 NM_001080847 ENSG00000266714 MYO15B MYO15BP myosin XVB pseudogene pseudo 13-PTNLD9-TUMOR_peak_39845 chr4 170155432 170155582 + 6.52353 NA intron (NM_020870, intron 2 of 11) MER20|DNA|hAT-Charlie 36742 NM_020870 57630 Hs.301804 NM_020870 HPRD:15335 SH3RF1 POSH|RNF142|SH3MD2 SH3 domain containing ring finger 1 protein-coding 13-PTNLD9-TUMOR_peak_35243 chr3 106843797 106843978 + 6.52353 NA intron (NR_028303, intron 2 of 3) LTR38B|LTR|ERV1 115598 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 13-PTNLD9-TUMOR_peak_18368 chr16 4452801 4452904 + 6.52353 NA intron (NM_024535, intron 6 of 27) intron (NM_024535, intron 6 of 27) 14110 NM_024535 79585 Hs.437957 NM_024535 HPRD:07975 CORO7 0610011B16Rik|CRN7|POD1 coronin 7 protein-coding 13-PTNLD9-TUMOR_peak_11974 chr12 6501883 6501987 + 6.52353 NA Intergenic L4|LINE|RTE 8736 NM_002342 4055 Hs.1116 NM_002342 HPRD:02988 LTBR CD18|D12S370|LT-BETA-R|TNF-R-III|TNFCR|TNFR-RP|TNFR2-RP|TNFR3|TNFRSF3 lymphotoxin beta receptor (TNFR superfamily, member 3) protein-coding 13-PTNLD9-TUMOR_peak_49744 chr7 153154955 153155236 + 6.52353 NA Intergenic Intergenic -45776 NR_125776 103724390 Hs.614280 NR_125776 LINC01287 TCONS_l2_00027522 long intergenic non-protein coding RNA 1287 ncRNA 13-PTNLD9-TUMOR_peak_13013 chr12 56895172 56895266 + 6.52353 NA Intergenic LTR13|LTR|ERVK -13021 NM_013267 27165 Hs.212606 NM_013267 HPRD:05901 GLS2 GA|GLS|LGA|hLGA glutaminase 2 (liver, mitochondrial) protein-coding 13-PTNLD9-TUMOR_peak_5214 chr1 205481293 205481454 + 6.52353 NA intron (NM_002596, intron 1 of 15) L2|LINE|L2 7689 NM_002596 5129 Hs.445402 NM_002596 HPRD:01354 CDK18 PCTAIRE|PCTAIRE3|PCTK3 cyclin-dependent kinase 18 protein-coding 13-PTNLD9-TUMOR_peak_56597 chrX 149589576 149589696 + 6.52353 NA intron (NM_001177465, intron 1 of 4) L1HS|LINE|L1 -24084 NM_001177466 10046 Hs.20136 NM_005491 HPRD:02126 MAMLD1 CG1|CXorf6|F18|HYSP2 mastermind-like domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_33827 chr3 13133787 13133914 + 6.52353 NA Intergenic Intergenic -19233 NM_001134382 9922 Hs.475506 NM_014869 HPRD:11052 IQSEC1 ARF-GEP100|ARFGEP100|BRAG2|GEP100 IQ motif and Sec7 domain 1 protein-coding 13-PTNLD9-TUMOR_peak_53560 chr9 71994642 71994764 + 6.52353 NA intron (NM_004816, intron 6 of 10) intron (NM_004816, intron 6 of 10) 50462 NM_004816 9413 Hs.118003 NM_004816 HPRD:16255 FAM189A2 C9orf61|X123 family with sequence similarity 189, member A2 protein-coding 13-PTNLD9-TUMOR_peak_48615 chr7 101652999 101653246 + 6.52353 NA intron (NM_001202544, intron 2 of 21) intron (NM_001202544, intron 2 of 21) 192240 NM_181552 1523 Hs.191482 NM_001913 HPRD:00295 CUX1 CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GOLIM6|Nbla10317|p100|p110|p200|p75 cut-like homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_28772 chr2 153916275 153916443 + 6.52353 NA Intergenic L2|LINE|L2 341952 NR_024526 151188 Hs.643580 NM_152522 HPRD:12485 ARL6IP6 AIP-6|PFAAP1 ADP-ribosylation factor-like 6 interacting protein 6 protein-coding 13-PTNLD9-TUMOR_peak_42589 chr5 149020951 149021069 + 6.52353 NA Intergenic Intergenic 59875 NM_001001669 389337 Hs.256206 NM_001001669 HPRD:13454 ARHGEF37 - Rho guanine nucleotide exchange factor (GEF) 37 protein-coding 13-PTNLD9-TUMOR_peak_12914 chr12 54261573 54261737 + 6.52353 NA Intergenic Intergenic -70921 NM_017410 3229 Hs.118608 NM_017410 HPRD:00862 HOXC13 ECTD9|HOX3|HOX3G homeobox C13 protein-coding 13-PTNLD9-TUMOR_peak_8827 chr11 2868860 2868954 + 6.52353 NA intron (NM_181798, intron 15 of 15) intron (NM_181798, intron 15 of 15) -22356 NR_024627 55539 Hs.127821 NM_018722 HPRD:17174 KCNQ1DN BWRT|HSA404617 KCNQ1 downstream neighbor (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_18068 chr15 99645025 99645268 + 6.52353 NA promoter-TSS (NM_145728) promoter-TSS (NM_145728) -140 NM_015286 23336 Hs.207106 NM_015286 HPRD:07305 SYNM DMN|SYN synemin, intermediate filament protein protein-coding 13-PTNLD9-TUMOR_peak_20417 chr17 7893317 7893418 + 6.52353 NA Intergenic CpG -12621 NM_000180 3000 Hs.592109 NM_000180 HPRD:02550 GUCY2D CORD5|CORD6|CYGD|GUC1A4|GUC2D|LCA|LCA1|RCD2|RETGC-1|ROS-GC1|ROSGC|retGC guanylate cyclase 2D, membrane (retina-specific) protein-coding 13-PTNLD9-TUMOR_peak_23328 chr18 57223602 57223755 + 6.52353 NA intron (NM_133459, intron 2 of 10) intron (NM_133459, intron 2 of 10) 140966 NM_133459 147372 Hs.34333 NM_133459 HPRD:08703 CCBE1 - collagen and calcium binding EGF domains 1 protein-coding 13-PTNLD9-TUMOR_peak_15637 chr14 45169548 45169653 + 6.52353 NA Intergenic Intergenic -193101 NM_032135 84075 Hs.307086 NM_032135 HPRD:12638 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 13-PTNLD9-TUMOR_peak_34564 chr3 49757083 49757269 + 6.52253 NA promoter-TSS (NM_198722) promoter-TSS (NM_198722) 62 NM_198722 386724 Hs.567903 NM_198722 HPRD:16484 AMIGO3 ALI3|AMIGO-3 adhesion molecule with Ig-like domain 3 protein-coding 13-PTNLD9-TUMOR_peak_38714 chr4 82388126 82388230 + 6.51855 NA intron (NM_152545, intron 1 of 13) intron (NM_152545, intron 1 of 13) 4904 NM_001300735 153020 Hs.591696 NM_152545 HPRD:17955 RASGEF1B GPIG4 RasGEF domain family, member 1B protein-coding 13-PTNLD9-TUMOR_peak_6309 chr10 3515059 3515193 + 6.51855 NA Intergenic Intergenic -300093 NM_001242307 10531 Hs.528300 NM_014889 HPRD:07142 PITRM1 MP1|PreP pitrilysin metallopeptidase 1 protein-coding 13-PTNLD9-TUMOR_peak_48080 chr7 76628373 76628481 + 6.51855 NA intron (NR_023383, intron 2 of 10) MIRb|SINE|MIR 18288 NR_023383 441263 Hs.675888 NR_023383 ENSG00000265479 DTX2P1-UPK3BP1-PMS2P11 PMS2L11|PMS2P11|PMSR6 DTX2P1-UPK3BP1-PMS2P11 readthrough transcribed pseudogene pseudo 13-PTNLD9-TUMOR_peak_31559 chr20 52228210 52228332 + 6.51814 NA Intergenic Intergenic -28635 NM_006526 7764 Hs.155040 NM_006526 HPRD:04272 ZNF217 ZABC1 zinc finger protein 217 protein-coding 13-PTNLD9-TUMOR_peak_25148 chr19 46027060 46027216 + 6.51814 NA intron (NM_003370, intron 9 of 12) intron (NM_003370, intron 9 of 12) 16450 NM_003370 7408 Hs.515469 NM_003370 HPRD:03415 VASP - vasodilator-stimulated phosphoprotein protein-coding 13-PTNLD9-TUMOR_peak_17485 chr15 67122710 67122891 + 6.51814 NA Intergenic Intergenic 121870 NM_001142861 4091 Hs.153863 NM_005585 HPRD:04240 SMAD6 AOVD2|HsT17432|MADH6|MADH7 SMAD family member 6 protein-coding 13-PTNLD9-TUMOR_peak_2737 chr1 109435940 109436075 + 6.51814 NA intron (NM_013296, intron 2 of 14) intron (NM_013296, intron 2 of 14) 16404 NM_013296 29899 Hs.584901 NM_013296 HPRD:06609 GPSM2 CMCS|DFNB82|LGN|PINS G-protein signaling modulator 2 protein-coding 13-PTNLD9-TUMOR_peak_54729 chr9 126045005 126045101 + 6.51814 NA Intergenic L2c|LINE|L2 -14198 NM_001171137 55342 Hs.287659 NM_018387 HPRD:10257 STRBP HEL162|ILF3L|SPNR|p74 spermatid perinuclear RNA binding protein protein-coding 13-PTNLD9-TUMOR_peak_43974 chr6 17279038 17279134 + 6.51814 NA Intergenic Intergenic -2723 NM_001143942 221662 Hs.519904 NM_153020 HPRD:15228 RBM24 RNPC6|dJ259A10.1 RNA binding motif protein 24 protein-coding 13-PTNLD9-TUMOR_peak_31255 chr20 45368200 45368320 + 6.51814 NA Intergenic L2|LINE|L2 29981 NM_030777 81031 Hs.305971 NM_030777 HPRD:05851 SLC2A10 ATS|GLUT10 solute carrier family 2 (facilitated glucose transporter), member 10 protein-coding 13-PTNLD9-TUMOR_peak_23730 chr19 4744966 4745108 + 6.51814 NA Intergenic Intergenic -21182 NM_139159 91039 Hs.515081 NM_139159 HPRD:07001 DPP9 DP9|DPLP9|DPRP-2|DPRP2 dipeptidyl-peptidase 9 protein-coding 13-PTNLD9-TUMOR_peak_6505 chr10 12996934 12997045 + 6.51814 NA intron (NM_001282658, intron 6 of 6) intron (NM_001282658, intron 6 of 6) 46715 NM_031455 83643 Hs.498720 NM_031455 HPRD:13008 CCDC3 - coiled-coil domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_14903 chr13 78898110 78898246 + 6.51814 NA intron (NR_047001, intron 3 of 5) intron (NR_047001, intron 3 of 5) 269188 NR_047001 100874222 Hs.493062 NR_047001 ENSG00000234377 RNF219-AS1 POU4F1-AS1 RNF219 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_5376 chr1 213188945 213189237 + 6.51814 NA promoter-TSS (NM_001300755) promoter-TSS (NM_001300755) 126 NM_144567 90806 Hs.157078 NM_144567 HPRD:14279 ANGEL2 Ccr4d|KIAA0759L angel homolog 2 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_34530 chr3 49079991 49080086 + 6.51814 NA intron (NM_198880, intron 6 of 9) AluSx1|SINE|Alu -13163 NM_000884 3615 Hs.654400 NM_000884 HPRD:00895 IMPDH2 IMPD2|IMPDH-II IMP (inosine 5'-monophosphate) dehydrogenase 2 protein-coding 13-PTNLD9-TUMOR_peak_12109 chr12 10285009 10285113 + 6.51814 NA Intergenic MER67B|LTR|ERV1 -2193 NM_197950 64581 Hs.143929 NM_022570 HPRD:08396 CLEC7A BGR|CANDF4|CLECSF12|DECTIN1 C-type lectin domain family 7, member A protein-coding 13-PTNLD9-TUMOR_peak_9676 chr11 45901837 45902020 + 6.51814 NA intron (NM_001127457, intron 11 of 11) intron (NM_001127457, intron 11 of 11) -5119 NM_005456 9479 Hs.234249 NM_005456 HPRD:05223 MAPK8IP1 IB1|JIP-1|JIP1|PRKM8IP mitogen-activated protein kinase 8 interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_21213 chr17 43261208 43261383 + 6.51814 NA Intergenic Intergenic 23031 NM_144608 124790 Hs.56382 NM_144608 HPRD:08129 HEXIM2 - hexamethylene bis-acetamide inducible 2 protein-coding 13-PTNLD9-TUMOR_peak_2708 chr1 108115286 108115477 + 6.51814 NA 3' UTR (NM_001079874, exon 10 of 10) 3' UTR (NM_001079874, exon 10 of 10) 115745 NM_001079874 10451 Hs.267659 NM_006113 HPRD:05706 VAV3 - vav 3 guanine nucleotide exchange factor protein-coding 13-PTNLD9-TUMOR_peak_7930 chr10 87989235 87989512 + 6.51814 NA intron (NM_017551, intron 2 of 15) intron (NM_017551, intron 2 of 15) 35172 NR_029907 442911 NR_029907 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 13-PTNLD9-TUMOR_peak_23238 chr18 53523484 53523829 + 6.51814 NA Intergenic Intergenic 63774 NR_110755 101927273 Hs.434335 NR_110755 ENSG00000260930 LOC101927273 - uncharacterized LOC101927273 ncRNA 13-PTNLD9-TUMOR_peak_30393 chr20 9669791 9669946 + 6.51814 NA intron (NM_177990, intron 2 of 9) intron (NM_177990, intron 2 of 9) 149819 NM_177990 57144 Hs.32539 NM_020341 HPRD:06423 PAK7 PAK5 p21 protein (Cdc42/Rac)-activated kinase 7 protein-coding 13-PTNLD9-TUMOR_peak_44068 chr6 20605956 20606093 + 6.51814 NA intron (NM_017774, intron 4 of 15) L1MEc|LINE|L1 71336 NM_017774 54901 Hs.657604 NM_017774 HPRD:13022 CDKAL1 - CDK5 regulatory subunit associated protein 1-like 1 protein-coding 13-PTNLD9-TUMOR_peak_12743 chr12 50460411 50460540 + 6.51814 NA intron (NM_020039, intron 3 of 11) L2a|LINE|L2 -6893 NM_001256830 41 Hs.274361 NM_001095 HPRD:04182 ASIC1 ACCN2|ASIC|BNaC2 acid-sensing (proton-gated) ion channel 1 protein-coding 13-PTNLD9-TUMOR_peak_39401 chr4 139531161 139531490 + 6.51814 NA Intergenic Intergenic 300460 NR_051987 100874047 Hs.570848 NR_051987 ENSG00000251372 LINC00499 - long intergenic non-protein coding RNA 499 ncRNA 13-PTNLD9-TUMOR_peak_48181 chr7 83179581 83179720 + 6.51814 NA intron (NM_012431, intron 1 of 16) intron (NM_012431, intron 1 of 16) 67087 NR_107016 102465857 NR_107016 MIR7976 hsa-mir-7976 microRNA 7976 ncRNA 13-PTNLD9-TUMOR_peak_3070 chr1 120025307 120025511 + 6.51814 NA Intergenic Intergenic -24417 NM_000862 3283 Hs.364941 NM_000862 HPRD:04920 HSD3B1 3BETAHSD|HSD3B|HSDB3|HSDB3A|I|SDR11E1 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1 protein-coding 13-PTNLD9-TUMOR_peak_36949 chr3 183677049 183677305 + 6.51814 NA intron (NM_005688, intron 17 of 29) intron (NM_005688, intron 17 of 29) -46949 NR_046570 100873982 Hs.570696 NR_046570 ENSG00000223882 ABCC5-AS1 - ABCC5 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_14540 chr13 31317915 31318084 + 6.51814 NA intron (NM_001204406, intron 2 of 5) L2c|LINE|L2 8354 NM_001629 241 Hs.507658 NM_001629 HPRD:04742 ALOX5AP FLAP arachidonate 5-lipoxygenase-activating protein protein-coding 13-PTNLD9-TUMOR_peak_36930 chr3 183128203 183128359 + 6.51814 NA intron (NM_015078, intron 1 of 29) intron (NM_015078, intron 1 of 29) 17776 NM_015078 23101 Hs.208267 NM_015078 HPRD:08308 MCF2L2 ARHGEF22 MCF.2 cell line derived transforming sequence-like 2 protein-coding 13-PTNLD9-TUMOR_peak_10936 chr11 93926580 93926741 + 6.51814 NA Intergenic Intergenic 64566 NM_015368 24145 Hs.591976 NM_015368 HPRD:10526 PANX1 MRS1|PX1|UNQ2529 pannexin 1 protein-coding 13-PTNLD9-TUMOR_peak_23927 chr19 10399456 10399564 + 6.51716 NA TTS (NM_022377) TTS (NM_022377) -1145 NM_003259 7087 Hs.465862 NM_003259 HPRD:03509 ICAM5 TLCN|TLN intercellular adhesion molecule 5, telencephalin protein-coding 13-PTNLD9-TUMOR_peak_30950 chr20 35806675 35806882 + 6.51581 NA promoter-TSS (NM_001135771) promoter-TSS (NM_001135771) -678 NM_002951 6185 Hs.370895 NM_002951 HPRD:01609 RPN2 RIBIIR|RPN-II|RPNII|SWP1 ribophorin II protein-coding 13-PTNLD9-TUMOR_peak_7823 chr10 79633375 79633513 + 6.50405 NA intron (NM_004747, intron 1 of 31) intron (NM_004747, intron 1 of 31) 52904 NM_004747 9231 Hs.652690 NM_004747 HPRD:04972 DLG5 LP-DLG|P-DLG5|PDLG discs, large homolog 5 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_4391 chr1 171711375 171711855 + 6.50405 NA promoter-TSS (NM_003762) promoter-TSS (NM_003762) -236 NM_003762 8674 Hs.6651 NM_003762 HPRD:06070 VAMP4 VAMP-4|VAMP24 vesicle-associated membrane protein 4 protein-coding 13-PTNLD9-TUMOR_peak_2309 chr1 85098736 85098834 + 6.50405 NA intron (NR_027379, intron 1 of 2) L2b|LINE|L2 1918 NR_027379 439927 Hs.407054 NM_001033660 HPRD:08182 C1orf180 - chromosome 1 open reading frame 180 ncRNA 13-PTNLD9-TUMOR_peak_47861 chr7 72734197 72734351 + 6.50405 NA intron (NM_001281451, intron 2 of 6) intron (NM_001281451, intron 2 of 6) 5305 NM_001281451 135892 Hs.647053 NM_178125 HPRD:15566 TRIM50 TRIM50A tripartite motif containing 50 protein-coding 13-PTNLD9-TUMOR_peak_22352 chr17 80550863 80551182 + 6.50405 NA intron (NM_004514, intron 8 of 8) intron (NM_004514, intron 8 of 8) 55389 NM_019613 56270 Hs.132161 NM_019613 HPRD:15669 WDR45B WDR45L|WIPI-3|WIPI3 WD repeat domain 45B protein-coding 13-PTNLD9-TUMOR_peak_56615 chrX 150102956 150103063 + 6.50405 NA Intergenic L3|LINE|CR1 -35720 NM_134446 83692 Hs.522805 NM_031462 ENSG00000102181 CD99L2 CD99B|MIC2L1 CD99 molecule-like 2 protein-coding 13-PTNLD9-TUMOR_peak_28805 chr2 157255661 157255766 + 6.50351 NA Intergenic Intergenic -36252 NM_001083112 2820 Hs.512382 NM_000408 HPRD:00715 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 (mitochondrial) protein-coding 13-PTNLD9-TUMOR_peak_22012 chr17 73679880 73679984 + 6.50351 NA intron (NM_013260, intron 3 of 10) intron (NM_013260, intron 3 of 10) 16533 NM_013260 29115 Hs.655088 NM_013260 HPRD:17094 SAP30BP HCNGP|HTRG|HTRP SAP30 binding protein protein-coding 13-PTNLD9-TUMOR_peak_13185 chr12 65997376 65997527 + 6.50351 NA intron (NR_120434, intron 2 of 4) intron (NR_120434, intron 2 of 4) 38701 NR_120433 100507065 Hs.591038 NR_120431 ENSG00000250748 LOC100507065 - uncharacterized LOC100507065 ncRNA 13-PTNLD9-TUMOR_peak_25031 chr19 41729523 41729729 + 6.50101 NA intron (NM_021913, intron 4 of 19) intron (NM_021913, intron 4 of 19) -3034 NM_001278599 558 Hs.590970 NM_001699 HPRD:00171 AXL JTK11|UFO AXL receptor tyrosine kinase protein-coding 13-PTNLD9-TUMOR_peak_25495 chr19 51523576 51523673 + 6.50053 NA promoter-TSS (NM_002776) promoter-TSS (NM_002776) -193 NM_001077500 5655 Hs.275464 NM_002776 HPRD:04054 KLK10 NES1|PRSSL1 kallikrein-related peptidase 10 protein-coding 13-PTNLD9-TUMOR_peak_2133 chr1 68153459 68153561 + 6.49920 NA 3' UTR (NM_001199741, exon 3 of 3) 3' UTR (NM_001199741, exon 3 of 3) 2650 NM_001924 1647 Hs.80409 NM_001924 HPRD:00528 GADD45A DDIT1|GADD45 growth arrest and DNA-damage-inducible, alpha protein-coding 13-PTNLD9-TUMOR_peak_41551 chr5 95170661 95170846 + 6.49878 NA Intergenic CpG -12176 NM_001118890 2745 Hs.28988 NM_002064 HPRD:02707 GLRX GRX|GRX1 glutaredoxin (thioltransferase) protein-coding 13-PTNLD9-TUMOR_peak_347 chr1 9779260 9779447 + 6.49878 NA intron (NM_005026, intron 9 of 23) intron (NM_005026, intron 9 of 23) -64709 NR_027045 644997 Hs.568595 NM_001045478 ENSG00000179840 C1orf200 - chromosome 1 open reading frame 200 ncRNA 13-PTNLD9-TUMOR_peak_48391 chr7 97249789 97249892 + 6.49878 NA Intergenic Intergenic -111431 NM_003182 6863 Hs.2563 NM_003182 HPRD:08876 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin, precursor 1 protein-coding 13-PTNLD9-TUMOR_peak_21803 chr17 63449716 63449877 + 6.49878 NA Intergenic Intergenic 107944 NM_004655 8313 Hs.156527 NM_004655 HPRD:04935 AXIN2 AXIL|ODCRCS axin 2 protein-coding 13-PTNLD9-TUMOR_peak_11217 chr11 112034735 112034847 + 6.49878 NA promoter-TSS (NM_001243211) promoter-TSS (NM_001243211) 49 NM_001243211 3606 Hs.83077 NM_001562 HPRD:02976 IL18 IGIF|IL-18|IL-1g|IL1F4 interleukin 18 protein-coding 13-PTNLD9-TUMOR_peak_40938 chr5 56300725 56300869 + 6.49878 NA Intergenic Intergenic -52840 NM_152622 166968 Hs.657594 NM_152622 HPRD:08199 MIER3 - mesoderm induction early response 1, family member 3 protein-coding 13-PTNLD9-TUMOR_peak_7790 chr10 77110722 77110854 + 6.49878 NA intron (NR_038226, intron 2 of 3) L1ME3C|LINE|L1 -50498 NR_024421 100131213 Hs.534598 NR_024421 ZNF503-AS2 C10orf41|NCRNA00245 ZNF503 antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_23983 chr19 11202412 11202720 + 6.49875 NA intron (NM_001195799, intron 1 of 16) intron (NM_001195799, intron 1 of 16) 2528 NM_001195800 3949 Hs.213289 NM_000527 HPRD:06091 LDLR FH|FHC|LDLCQ2 low density lipoprotein receptor protein-coding 13-PTNLD9-TUMOR_peak_5909 chr1 234700126 234700250 + 6.49567 NA Intergenic Intergenic -32663 NR_038426 100506795 Hs.448989 NR_038426 ENSG00000231768 LINC01354 - long intergenic non-protein coding RNA 1354 ncRNA 13-PTNLD9-TUMOR_peak_25299 chr19 48991285 48991548 + 6.49567 NA intron (NM_001080434, intron 15 of 15) intron (NM_001080434, intron 15 of 15) 18951 NM_017457 9266 Hs.144011 NM_004228 HPRD:03925 CYTH2 ARNO|CTS18|CTS18.1|PSCD2|PSCD2L|SEC7L|Sec7p-L|Sec7p-like cytohesin 2 protein-coding 13-PTNLD9-TUMOR_peak_22031 chr17 73865447 73865602 + 6.49567 NA Intergenic Tigger7|DNA|TcMar-Tigger 9132 NM_033452 91107 Hs.293660 NM_033452 HPRD:15564 TRIM47 GOA|RNF100 tripartite motif containing 47 protein-coding 13-PTNLD9-TUMOR_peak_4100 chr1 160378349 160378604 + 6.48901 NA intron (NM_020335, intron 1 of 7) intron (NM_020335, intron 1 of 7) 8112 NM_020335 57216 Hs.99477 NM_020335 HPRD:02758 VANGL2 LPP1|LTAP|STB1|STBM|STBM1 VANGL planar cell polarity protein 2 protein-coding 13-PTNLD9-TUMOR_peak_14865 chr13 76111897 76112077 + 6.48901 NA promoter-TSS (NM_203497) promoter-TSS (NM_203497) 21 NM_001287392 170622 Hs.508266 NM_203495 HPRD:13084 COMMD6 Acrg COMM domain containing 6 protein-coding 13-PTNLD9-TUMOR_peak_34800 chr3 60732075 60732225 + 6.48901 NA intron (NM_001166243, intron 4 of 9) intron (NM_001166243, intron 4 of 9) 504983 NM_002012 2272 Hs.655995 NM_002012 HPRD:03096 FHIT AP3Aase|FRA3B fragile histidine triad protein-coding 13-PTNLD9-TUMOR_peak_830 chr1 27985447 27985577 + 6.48901 NA Intergenic Intergenic 13212 NM_022872 2537 Hs.523847 NM_002038 HPRD:00959 IFI6 6-16|FAM14C|G1P3|IFI-6-16|IFI616 interferon, alpha-inducible protein 6 protein-coding 13-PTNLD9-TUMOR_peak_53863 chr9 89229880 89229982 + 6.48901 NA Intergenic Intergenic -260529 NM_001185059 79670 Hs.597057 NM_024617 HPRD:11697 ZCCHC6 PAPD6|TUT7 zinc finger, CCHC domain containing 6 protein-coding 13-PTNLD9-TUMOR_peak_16809 chr15 23959659 23959774 + 6.48901 NA Intergenic L1PA3|LINE|L1 -27266 NM_002487 4692 Hs.50130 NM_002487 HPRD:03667 NDN HsT16328|PWCR necdin, melanoma antigen (MAGE) family member protein-coding 13-PTNLD9-TUMOR_peak_14498 chr13 30009344 30009580 + 6.48901 NA intron (NM_015233, intron 1 of 8) intron (NM_015233, intron 1 of 8) 6685 NM_015233 23281 Hs.22287 NM_015233 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated tumor suppressor candidate 2 protein-coding 13-PTNLD9-TUMOR_peak_53941 chr9 92229373 92229532 + 6.48901 NA Intergenic Intergenic 9525 NM_006705 10912 Hs.9701 NM_006705 HPRD:05383 GADD45G CR6|DDIT2|GADD45gamma|GRP17 growth arrest and DNA-damage-inducible, gamma protein-coding 13-PTNLD9-TUMOR_peak_24703 chr19 34286683 34287033 + 6.48901 NA promoter-TSS (NM_024076) promoter-TSS (NM_024076) -893 NM_001129994 79047 Hs.221873 NM_024076 HPRD:13765 KCTD15 - potassium channel tetramerization domain containing 15 protein-coding 13-PTNLD9-TUMOR_peak_51379 chr8 100618522 100618732 + 6.48901 NA intron (NM_152564, intron 33 of 61) intron (NM_152564, intron 33 of 61) -69538 NR_030596 100126309 NR_030596 miRBase:MI0005541 MIR875 MIRN875|hsa-mir-875 microRNA 875 ncRNA 13-PTNLD9-TUMOR_peak_16315 chr14 77371332 77371453 + 6.48901 NA Intergenic MIRb|SINE|MIR 78667 NM_194287 145497 Hs.147276 NM_194287 HPRD:12621 LRRC74A C14orf166B|LRRC74 leucine rich repeat containing 74A protein-coding 13-PTNLD9-TUMOR_peak_44084 chr6 21797516 21797680 + 6.48901 NA intron (NR_015410, intron 3 of 11) SVA_F|Other|Other 130923 NR_015410 401237 Hs.712707 NR_015410 ENSG00000272168 CASC15 LINC00340 cancer susceptibility candidate 15 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_16636 chr14 103719785 103719904 + 6.48901 NA Intergenic AluJo|SINE|Alu -64479 NR_033938 100131366 Hs.147881 NR_033938 ENSG00000251533 LINC00605 - long intergenic non-protein coding RNA 605 ncRNA 13-PTNLD9-TUMOR_peak_48174 chr7 82434883 82434979 + 6.48901 NA intron (NM_033026, intron 21 of 24) intron (NM_033026, intron 21 of 24) 357266 NM_014510 27445 Hs.12376 NM_014510 HPRD:16078 PCLO ACZ piccolo presynaptic cytomatrix protein protein-coding 13-PTNLD9-TUMOR_peak_51664 chr8 117587208 117587363 + 6.48901 NA Intergenic MLT1I|LTR|ERVL-MaLR 180777 NM_003756 8667 Hs.492599 NM_003756 EIF3H EIF3S3|eIF3-gamma|eIF3-p40 eukaryotic translation initiation factor 3, subunit H protein-coding 13-PTNLD9-TUMOR_peak_41542 chr5 94081887 94082049 + 6.48901 NA intron (NM_001002796, intron 19 of 22) intron (NM_001002796, intron 19 of 22) 127577 NM_032290 84250 Hs.657315 NM_032290 HPRD:08538 ANKRD32 BRCTD1|BRCTx ankyrin repeat domain 32 protein-coding 13-PTNLD9-TUMOR_peak_23351 chr18 59249213 59249322 + 6.48901 NA Intergenic Intergenic 91492 NM_031891 28316 Hs.671510 NM_031891 HPRD:10429 CDH20 CDH7L3|Cdh7 cadherin 20, type 2 protein-coding 13-PTNLD9-TUMOR_peak_41223 chr5 71675967 71676139 + 6.48901 NA Intergenic MLT1M|LTR|ERVL-MaLR 59859 NM_001284404 79810 Hs.126906 NM_024754 HPRD:15193 PTCD2 - pentatricopeptide repeat domain 2 protein-coding 13-PTNLD9-TUMOR_peak_19000 chr16 30411978 30412110 + 6.48901 NA TTS (NM_001214906) TTS (NM_001214906) 5304 NM_152652 197407 Hs.513501 NM_152652 HPRD:15836 ZNF48 ZNF553 zinc finger protein 48 protein-coding 13-PTNLD9-TUMOR_peak_29988 chr2 231577359 231577754 + 6.48901 NA promoter-TSS (NM_001130849) promoter-TSS (NM_001130849) -1 NM_016289 51719 Hs.603930 NM_016289 HPRD:10091 CAB39 MO25 calcium binding protein 39 protein-coding 13-PTNLD9-TUMOR_peak_15887 chr14 58499384 58499564 + 6.48901 NA intron (NM_001001872, intron 5 of 7) L1HS|LINE|L1 119373 NM_001001872 145407 Hs.535420 NM_001001872 C14orf37 c14_5376 chromosome 14 open reading frame 37 protein-coding 13-PTNLD9-TUMOR_peak_52546 chr8 146012722 146012903 + 6.47948 NA promoter-TSS (NM_030580) promoter-TSS (NM_030580) -82 NM_001286769 80778 Hs.631854 NM_030580 HPRD:11772 ZNF34 KOX32 zinc finger protein 34 protein-coding 13-PTNLD9-TUMOR_peak_48801 chr7 107852004 107852122 + 6.47847 NA intron (NM_001037132, intron 8 of 29) L1PB1|LINE|L1 28551 NM_001037132 4897 Hs.21422 NM_005010 HPRD:07207 NRCAM - neuronal cell adhesion molecule protein-coding 13-PTNLD9-TUMOR_peak_7856 chr10 80955260 80955440 + 6.47847 NA intron (NM_020338, intron 4 of 24) intron (NM_020338, intron 4 of 24) 126558 NM_020338 57178 Hs.193118 NM_020338 HPRD:12115 ZMIZ1 MIZ|RAI17|TRAFIP10|ZIMP10|hZIMP10 zinc finger, MIZ-type containing 1 protein-coding 13-PTNLD9-TUMOR_peak_49715 chr7 152224640 152224866 + 6.47847 NA Intergenic Intergenic 63544 NR_027387 100128822 Hs.647112 NR_027387 ENSG00000261455 LINC01003 - long intergenic non-protein coding RNA 1003 ncRNA 13-PTNLD9-TUMOR_peak_34848 chr3 64598879 64599139 + 6.47847 NA intron (NM_182920, intron 22 of 39) intron (NM_182920, intron 22 of 39) 51987 NR_110150 101929335 Hs.476604 NR_110150 ADAMTS9-AS1 - ADAMTS9 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_17347 chr15 58429081 58429197 + 6.47847 NA Intergenic Intergenic -1269 NM_020980 366 Hs.104624 NM_020980 HPRD:04223 AQP9 AQP-9|HsT17287|SSC1 aquaporin 9 protein-coding 13-PTNLD9-TUMOR_peak_41731 chr5 111319787 111319997 + 6.47847 NA intron (NR_046678, intron 3 of 3) intron (NR_046678, intron 3 of 3) -7264 NM_001142475 9315 Hs.36053 NM_004772 HPRD:09545 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 13-PTNLD9-TUMOR_peak_32674 chr22 18312887 18313018 + 6.47847 NA intron (NM_015241, intron 21 of 31) intron (NM_015241, intron 21 of 31) 52896 NR_103718 200298 Hs.517397 NR_103718 ENSG00000269220 LINC00528 C22orf37 long intergenic non-protein coding RNA 528 ncRNA 13-PTNLD9-TUMOR_peak_27319 chr2 74875156 74875422 + 6.47847 NA promoter-TSS (NM_138804) promoter-TSS (NM_138804) -125 NM_138804 130951 Hs.348645 NM_138804 HPRD:14047 M1AP C2orf65|D6Mm5e|SPATA37 meiosis 1 associated protein protein-coding 13-PTNLD9-TUMOR_peak_5035 chr1 202537003 202537210 + 6.47847 NA intron (NM_001197131, intron 5 of 6) intron (NM_001197131, intron 5 of 6) 27864 NM_001197131 4660 Hs.444403 NM_002481 HPRD:04794 PPP1R12B MYPT2|PP1bp55 protein phosphatase 1, regulatory subunit 12B protein-coding 13-PTNLD9-TUMOR_peak_21345 chr17 46152300 46152400 + 6.47847 NA intron (NM_006807, intron 4 of 4) intron (NM_006807, intron 4 of 4) 26210 NM_006807 10951 Hs.77254 NM_006807 HPRD:05149 CBX1 CBX|HP1-BETA|HP1Hs-beta|HP1Hsbeta|M31|MOD1|p25beta chromobox homolog 1 protein-coding 13-PTNLD9-TUMOR_peak_52189 chr8 134742253 134742633 + 6.47847 NA Intergenic Intergenic 47152 NR_125422 101927798 Hs.615036 NR_125422 ENSG00000253165 LOC101927798 - uncharacterized LOC101927798 ncRNA 13-PTNLD9-TUMOR_peak_20265 chr17 2752106 2752231 + 6.47847 NA intron (NM_015085, intron 2 of 24) intron (NM_015085, intron 2 of 24) 52436 NM_001100398 23108 Hs.499659 NM_015085 HPRD:17028 RAP1GAP2 GARNL4|RAP1GA3 RAP1 GTPase activating protein 2 protein-coding 13-PTNLD9-TUMOR_peak_56410 chrX 118636974 118637343 + 6.47847 NA Intergenic Intergenic -34075 NR_028443 100303728 Hs.714405 NR_028443 ENSG00000224281 SLC25A5-AS1 - SLC25A5 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_26280 chr2 20842277 20842376 + 6.47847 NA intron (NM_022460, intron 2 of 6) intron (NM_022460, intron 2 of 6) 8538 NM_022460 64342 Hs.531785 NM_022460 HPRD:13357 HS1BP3 ETM2|HS1-BP3 HCLS1 binding protein 3 protein-coding 13-PTNLD9-TUMOR_peak_41030 chr5 61578932 61579101 + 6.47847 NA Intergenic Intergenic -22973 NM_001243953 3796 Hs.558351 NM_004520 KIF2A CDCBM3|HK2|KIF2 kinesin heavy chain member 2A protein-coding 13-PTNLD9-TUMOR_peak_23734 chr19 4889624 4889732 + 6.47847 NA TTS (NM_001080523) TTS (NM_001080523) 13201 NM_001080523 645432 Hs.574574 NM_001080523 ENSG00000205784 ARRDC5 - arrestin domain containing 5 protein-coding 13-PTNLD9-TUMOR_peak_13447 chr12 88974149 88974454 + 6.47847 NA promoter-TSS (NM_003994) promoter-TSS (NM_003994) -51 NM_000899 4254 Hs.1048 NM_000899 KITLG FPH2|KL-1|Kitl|MGF|SCF|SF|SHEP7 KIT ligand protein-coding 13-PTNLD9-TUMOR_peak_34695 chr3 53915734 53916266 + 6.47847 NA intron (NM_022899, intron 1 of 12) CpG 229 NM_022899 93973 Hs.412186 NM_022899 HPRD:09792 ACTR8 ARP8|INO80N|hArp8 ARP8 actin-related protein 8 homolog (yeast) protein-coding 13-PTNLD9-TUMOR_peak_29964 chr2 228728069 228728196 + 6.47847 NA Intergenic Intergenic -8195 NM_178821 164781 Hs.424594 NM_178821 HPRD:08079 DAW1 ODA16|WDR69 dynein assembly factor with WDR repeat domains 1 protein-coding 13-PTNLD9-TUMOR_peak_18088 chr15 101137041 101137356 + 6.47847 NA intron (NM_001040616, intron 1 of 6) LTR43B|LTR|ERV1 5247 NM_001040616 55180 Hs.105633 NM_018148 LINS LINS1|MRT27|WINS1 lines homolog (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_23431 chr18 68098488 68098722 + 6.47847 NA Intergenic Intergenic -46778 NR_110764 101060542 Hs.586967 NR_110764 ENSG00000266278 LOC101060542 - uncharacterized LOC101060542 ncRNA 13-PTNLD9-TUMOR_peak_42036 chr5 131793376 131793517 + 6.47847 NA intron (NR_045116, intron 3 of 3) intron (NR_045116, intron 3 of 3) 33019 NM_002198 3659 Hs.436061 NM_002198 HPRD:00961 IRF1 IRF-1|MAR interferon regulatory factor 1 protein-coding 13-PTNLD9-TUMOR_peak_10845 chr11 86399973 86400131 + 6.47847 NA Intergenic L1MEg|LINE|L1 -16374 NM_001161586 10873 Hs.199743 NM_006680 HPRD:06862 ME3 NADP-ME malic enzyme 3, NADP(+)-dependent, mitochondrial protein-coding 13-PTNLD9-TUMOR_peak_16050 chr14 65705970 65706128 + 6.47847 NA Intergenic Intergenic -16984 NR_103769 100128233 Hs.497323 NR_103769 ENSG00000255002 LOC100128233 - uncharacterized LOC100128233 ncRNA 13-PTNLD9-TUMOR_peak_2811 chr1 110730994 110731182 + 6.47847 NA intron (NM_001010898, intron 6 of 11) L2c|LINE|L2 21521 NR_046546 100873974 Hs.130515 NR_046546 KCNC4-AS1 - KCNC4 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_454 chr1 12514146 12514337 + 6.47847 NA intron (NM_015378, intron 65 of 69) MIRb|SINE|MIR -53059 NR_003025 677885 Hs.658450 NR_003025 SNORA59A ACA59 small nucleolar RNA, H/ACA box 59A snoRNA 13-PTNLD9-TUMOR_peak_33309 chr22 40742406 40742706 + 6.47847 NA promoter-TSS (NM_001123378) promoter-TSS (NM_001123378) 52 NM_000026 158 Hs.75527 NM_000026 HPRD:00049 ADSL AMPS|ASASE|ASL adenylosuccinate lyase protein-coding 13-PTNLD9-TUMOR_peak_9947 chr11 59522473 59522659 + 6.47847 NA promoter-TSS (NM_004177) promoter-TSS (NM_004177) 34 NM_004177 6809 Hs.180711 NM_004177 HPRD:15985 STX3 STX3A syntaxin 3 protein-coding 13-PTNLD9-TUMOR_peak_566 chr1 17563660 17563758 + 6.47847 NA intron (NM_013358, intron 11 of 15) intron (NM_013358, intron 11 of 15) -11884 NM_016233 51702 Hs.149195 NM_016233 HPRD:08419 PADI3 PAD3|PDI3 peptidyl arginine deiminase, type III protein-coding 13-PTNLD9-TUMOR_peak_26326 chr2 25264142 25264394 + 6.47847 NA promoter-TSS (NM_014971) promoter-TSS (NM_014971) -705 NM_014971 22979 Hs.4892 NM_014971 EFR3B KIAA0953 EFR3 homolog B (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_56669 chrX 152773103 152773226 + 6.47847 NA intron (NM_001711, intron 7 of 7) intron (NM_001711, intron 7 of 7) -12181 NR_073156 55559 Hs.170835 NM_017518 HPRD:18695 HAUS7 UCHL5IP|UIP1 HAUS augmin-like complex, subunit 7 protein-coding 13-PTNLD9-TUMOR_peak_17572 chr15 70798109 70798234 + 6.47697 NA Intergenic Intergenic 196449 NM_001008224 55075 Hs.108049 NM_018003 HPRD:11657 UACA NUCLING uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding 13-PTNLD9-TUMOR_peak_43935 chr6 16230065 16230268 + 6.47697 NA Intergenic HERV3-int|LTR|ERV1 -8645 NM_006877 2766 Hs.484741 NM_006877 HPRD:00754 GMPR GMPR1 guanosine monophosphate reductase protein-coding 13-PTNLD9-TUMOR_peak_23611 chr19 1241678 1241794 + 6.47697 NA promoter-TSS (NM_001687) promoter-TSS (NM_001687) -13 NM_001001975 513 Hs.418668 NM_001687 HPRD:04397 ATP5D - ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit protein-coding 13-PTNLD9-TUMOR_peak_51640 chr8 115649292 115649434 + 6.47697 NA Intergenic L1PA2|LINE|L1 1030876 NM_001282902 7227 Hs.657018 NM_014112 HPRD:05091 TRPS1 GC79|LGCR trichorhinophalangeal syndrome I protein-coding 13-PTNLD9-TUMOR_peak_17997 chr15 92482766 92482969 + 6.47285 NA intron (NM_013272, intron 2 of 9) intron (NM_013272, intron 2 of 9) 85929 NM_013272 28232 Hs.311187 NM_013272 HPRD:07502 SLCO3A1 OATP-D|OATP3A1|OATPD|SLC21A11 solute carrier organic anion transporter family, member 3A1 protein-coding 13-PTNLD9-TUMOR_peak_30213 chr2 242626653 242626767 + 6.46843 NA promoter-TSS (NM_012145) promoter-TSS (NM_012145) -327 NR_033255 1841 Hs.471873 NM_012145 HPRD:01773 DTYMK CDC8|PP3731|TMPK|TYMK deoxythymidylate kinase (thymidylate kinase) protein-coding 13-PTNLD9-TUMOR_peak_52968 chr9 27690969 27691098 + 6.46843 NA Intergenic L1PA2|LINE|L1 -117169 NM_001256054 203228 Hs.493639 NM_018325 HPRD:12975 C9orf72 ALSFTD|FTDALS chromosome 9 open reading frame 72 protein-coding 13-PTNLD9-TUMOR_peak_54584 chr9 118953372 118953537 + 6.46843 NA intron (NM_002581, intron 2 of 21) L3|LINE|CR1 37383 NM_002581 5069 Hs.643599 NM_002581 HPRD:01448 PAPPA ASBABP2|DIPLA1|IGFBP-4ase|PAPA|PAPP-A|PAPPA1 pregnancy-associated plasma protein A, pappalysin 1 protein-coding 13-PTNLD9-TUMOR_peak_530 chr1 16533506 16533665 + 6.46843 NA exon (NM_153213, exon 6 of 16) exon (NM_153213, exon 6 of 16) 5519 NM_153213 128272 Hs.591532 NM_153213 HPRD:10659 ARHGEF19 WGEF Rho guanine nucleotide exchange factor (GEF) 19 protein-coding 13-PTNLD9-TUMOR_peak_29162 chr2 176046434 176046577 + 6.46843 NA promoter-TSS (NM_001689) promoter-TSS (NM_001689) -15 NM_001190329 518 Hs.429 NM_001689 ATP5G3 P3 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9) protein-coding 13-PTNLD9-TUMOR_peak_7575 chr10 70631226 70631325 + 6.46843 NA intron (NM_001130161, intron 1 of 4) intron (NM_001130161, intron 1 of 4) -29759 NM_024045 79009 Hs.522984 NM_024045 HPRD:09910 DDX50 GU2|GUB|RH-II/GuB|mcdrh DEAD (Asp-Glu-Ala-Asp) box polypeptide 50 protein-coding 13-PTNLD9-TUMOR_peak_22856 chr18 28736930 28737070 + 6.46843 NA intron (NM_024421, intron 3 of 15) intron (NM_024421, intron 3 of 15) 5819 NM_024421 1823 Hs.567260 NM_004948 HPRD:00511 DSC1 CDHF1|DG2/DG3 desmocollin 1 protein-coding 13-PTNLD9-TUMOR_peak_44647 chr6 32986762 32986905 + 6.46843 NA Intergenic Intergenic -9444 NM_002119 3111 Hs.631991 NM_002119 HPRD:00837 HLA-DOA HLA-DNA|HLA-DZA|HLADZ major histocompatibility complex, class II, DO alpha protein-coding 13-PTNLD9-TUMOR_peak_809 chr1 27481936 27482139 + 6.46843 NA promoter-TSS (NR_046474) promoter-TSS (NR_046474) -416 NM_003047 6548 Hs.91389 NM_003047 HPRD:00123 SLC9A1 APNH|NHE-1|NHE1|PPP1R143 solute carrier family 9, subfamily A (NHE1, cation proton antiporter 1), member 1 protein-coding 13-PTNLD9-TUMOR_peak_18488 chr16 10672451 10672659 + 6.46843 NA intron (NM_001424, intron 1 of 4) intron (NM_001424, intron 1 of 4) 1984 NM_001424 2013 Hs.531561 NM_001424 HPRD:11893 EMP2 NPHS10|XMP epithelial membrane protein 2 protein-coding 13-PTNLD9-TUMOR_peak_10192 chr11 64863613 64863925 + 6.46843 NA exon (NM_013265, exon 1 of 10) exon (NM_013265, exon 1 of 10) 182 NM_013265 738 Hs.277517 NM_013265 HPRD:12605 VPS51 ANG2|ANG3|C11orf2|C11orf3|FFR vacuolar protein sorting 51 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_48355 chr7 95025707 95025830 + 6.46843 NA promoter-TSS (NM_000940) promoter-TSS (NM_000940) -81 NM_000940 5446 Hs.440967 NM_000940 HPRD:04098 PON3 - paraoxonase 3 protein-coding 13-PTNLD9-TUMOR_peak_41354 chr5 76464062 76464291 + 6.46843 NA Intergenic Intergenic -42530 NM_001029851 8622 Hs.584830 NM_003719 HPRD:04546 PDE8B ADSD|PPNAD3 phosphodiesterase 8B protein-coding 13-PTNLD9-TUMOR_peak_37385 chr3 195447772 195448038 + 6.46129 NA exon (NM_001282506, exon 1 of 4) exon (NM_001282506, exon 1 of 4) 152 NM_020790 200958 Hs.308992 NM_020790 HPRD:17615 MUC20 MUC-20 mucin 20, cell surface associated protein-coding 13-PTNLD9-TUMOR_peak_10227 chr11 65278369 65278515 + 6.46129 NA Intergenic Intergenic -4366 NR_049839 100847035 NR_049839 MIR548AR - microRNA 548ar ncRNA 13-PTNLD9-TUMOR_peak_55422 chrUn_gl000228 26029 26248 + 6.45854 NA Intergenic LSAU|Satellite|Satellite 6088 NM_001005217 448831 Hs.626907 NM_001005217 HPRD:16418 FRG2 FRG2A FSHD region gene 2 protein-coding 13-PTNLD9-TUMOR_peak_50392 chr8 26148795 26148908 + 6.45469 NA promoter-TSS (NM_002717) promoter-TSS (NM_002717) -156 NM_002717 5520 Hs.146339 NM_002717 HPRD:09223 PPP2R2A B55A|B55ALPHA|PR52A|PR55A protein phosphatase 2, regulatory subunit B, alpha protein-coding 13-PTNLD9-TUMOR_peak_25188 chr19 46974443 46974672 + 6.45469 NA intron (NM_001103149, intron 1 of 2) CpG 263 NM_018215 55228 Hs.8395 NM_018215 HPRD:08552 PNMAL1 - paraneoplastic Ma antigen family-like 1 protein-coding 13-PTNLD9-TUMOR_peak_49041 chr7 129563709 129563849 + 6.45469 NA intron (NM_001202498, intron 1 of 6) intron (NM_001202498, intron 1 of 6) 29004 NM_001202498 7328 Hs.643548 NM_003344 HPRD:03052 UBE2H E2-20K|GID3|UBC8|UBCH|UBCH2 ubiquitin-conjugating enzyme E2H protein-coding 13-PTNLD9-TUMOR_peak_254 chr1 8035466 8035579 + 6.45469 NA intron (NM_001123377, intron 5 of 6) intron (NM_001123377, intron 5 of 6) 13808 NM_001123377 11315 Hs.419640 NM_007262 HPRD:03961 PARK7 DJ-1|DJ1|HEL-S-67p parkinson protein 7 protein-coding 13-PTNLD9-TUMOR_peak_23644 chr19 2028793 2028956 + 6.45469 NA Intergenic Intergenic -13172 NM_017797 55643 Hs.465543 NM_017797 HPRD:12252 BTBD2 - BTB (POZ) domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_13244 chr12 68243045 68243139 + 6.45469 NA Intergenic L1PA3|LINE|L1 -79923 NR_120456 101927922 Hs.450769 NR_120456 LINC01479 - long intergenic non-protein coding RNA 1479 ncRNA 13-PTNLD9-TUMOR_peak_22863 chr18 28829224 28829403 + 6.45469 NA Intergenic MLT2B4|LTR|ERVL -68739 NM_001942 1828 Hs.2633 NM_001942 HPRD:00515 DSG1 CDHF4|DG1|DSG|EPKHE|EPKHIA|PPKS1|SPPK1 desmoglein 1 protein-coding 13-PTNLD9-TUMOR_peak_24841 chr19 37708701 37708868 + 6.45469 NA Intergenic Intergenic -7333 NM_152279 92285 Hs.390568 NM_152279 HPRD:18354 ZNF585B SZFP41 zinc finger protein 585B protein-coding 13-PTNLD9-TUMOR_peak_9855 chr11 56673490 56673671 + 6.45469 NA Intergenic MIR|SINE|MIR 57626 NR_110136 101927120 Hs.472675 NR_110136 ENSG00000255433 LOC101927120 - uncharacterized LOC101927120 ncRNA 13-PTNLD9-TUMOR_peak_14490 chr13 29233112 29233281 + 6.45469 NA promoter-TSS (NM_015932) promoter-TSS (NM_015932) 55 NM_015932 51371 Hs.268742 NM_015932 HPRD:12613 POMP C13orf12|PNAS-110|UMP1 proteasome maturation protein protein-coding 13-PTNLD9-TUMOR_peak_36120 chr3 138945815 138946096 + 6.45469 NA Intergenic MER94|DNA|hAT-Blackjack 6409 NR_027070 140464 Hs.721270 NR_027070 PISRT1 NCRNA00195 polled intersex syndrome regulated transcript 1 (non-protein coding RNA) ncRNA 13-PTNLD9-TUMOR_peak_28176 chr2 115445934 115446035 + 6.45469 NA intron (NM_001178036, intron 2 of 26) intron (NM_001178036, intron 2 of 26) 226804 NM_001178036 57628 Hs.580539 NM_020868 HPRD:07083 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl-peptidase 10 (non-functional) protein-coding 13-PTNLD9-TUMOR_peak_22558 chr18 9771518 9771709 + 6.45469 NA intron (NM_006868, intron 1 of 6) intron (NM_006868, intron 1 of 6) 63385 NM_006868 11031 Hs.99528 NM_006868 HPRD:05751 RAB31 Rab22B RAB31, member RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_35486 chr3 118954166 118954313 + 6.45469 NA intron (NM_212543, intron 2 of 8) intron (NM_212543, intron 2 of 8) 5513 NM_003778 8702 Hs.13225 NM_003778 HPRD:04930 B4GALT4 B4Gal-T4|beta4Gal-T4 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4 protein-coding 13-PTNLD9-TUMOR_peak_36926 chr3 182996519 182996702 + 6.45469 NA intron (NM_015078, intron 14 of 29) intron (NM_015078, intron 14 of 29) 25578 NM_032047 84002 Hs.718506 NM_032047 HPRD:12511 B3GNT5 B3GN-T5|beta3Gn-T5 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 protein-coding 13-PTNLD9-TUMOR_peak_17818 chr15 83042427 83042570 + 6.45469 NA intron (NR_004847, intron 1 of 4) LTR10G|LTR|ERV1 18657 NR_004847 100134869 Hs.735222 NR_004847 UBE2Q2P2 UBE2Q2P3|UBE2QP2 ubiquitin-conjugating enzyme E2Q family member 2 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_10516 chr11 71405588 71405841 + 6.45469 NA Intergenic Intergenic -92843 NM_018172 55199 Hs.567527 NM_018172 HPRD:13337 FAM86C1 FAM86C family with sequence similarity 86, member C1 protein-coding 13-PTNLD9-TUMOR_peak_15766 chr14 52818668 52818762 + 6.45469 NA Intergenic Intergenic 37699 NM_000956 5732 Hs.2090 NM_000956 HPRD:08905 PTGER2 EP2 prostaglandin E receptor 2 (subtype EP2), 53kDa protein-coding 13-PTNLD9-TUMOR_peak_6400 chr10 6516056 6516255 + 6.45469 NA intron (NM_001282644, intron 12 of 17) intron (NM_001282644, intron 12 of 17) 106108 NM_001282644 5588 Hs.498570 NM_006257 HPRD:02710 PRKCQ PRKCT|nPKC-theta protein kinase C, theta protein-coding 13-PTNLD9-TUMOR_peak_1070 chr1 35253709 35253897 + 6.45469 NA Intergenic Intergenic -4796 NM_002060 2701 Hs.296310 NM_002060 HPRD:08509 GJA4 CX37 gap junction protein, alpha 4, 37kDa protein-coding 13-PTNLD9-TUMOR_peak_40177 chr5 1131343 1131521 + 6.45418 NA Intergenic Intergenic -19260 NM_006598 10723 Hs.172613 NM_006598 HPRD:09221 SLC12A7 KCC4 solute carrier family 12 (potassium/chloride transporter), member 7 protein-coding 13-PTNLD9-TUMOR_peak_42130 chr5 134073499 134073659 + 6.45371 NA promoter-TSS (NM_001745) promoter-TSS (NM_001745) -591 NM_001745 819 Hs.529846 NM_001745 HPRD:03073 CAMLG CAML calcium modulating ligand protein-coding 13-PTNLD9-TUMOR_peak_5196 chr1 205294575 205294796 + 6.45371 NA Intergenic Intergenic -3802 NM_030952 81788 Hs.497512 NM_030952 HPRD:12172 NUAK2 SNARK NUAK family, SNF1-like kinase, 2 protein-coding 13-PTNLD9-TUMOR_peak_53292 chr9 42253570 42253755 + 6.45371 NA Intergenic TAR1|Satellite|telo -114641 NM_001012421 441430 Hs.632663 NM_001012421 HPRD:18652 ANKRD20A2 - ankyrin repeat domain 20 family, member A2 protein-coding 13-PTNLD9-TUMOR_peak_1546 chr1 45097952 45098046 + 6.45371 NA intron (NM_018150, intron 5 of 14) CpG 42281 NM_024587 79639 Hs.22157 NM_024587 HPRD:07989 TMEM53 NET4 transmembrane protein 53 protein-coding 13-PTNLD9-TUMOR_peak_53357 chr9 45376580 45376707 + 6.44982 NA Intergenic Intergenic -371353 NR_121606 102723709 Hs.743015 NR_121606 LOC102723709 - uncharacterized LOC102723709 ncRNA 13-PTNLD9-TUMOR_peak_27309 chr2 74667942 74668091 + 6.44982 NA promoter-TSS (NM_033046) promoter-TSS (NM_033046) -306 NM_001015056 6242 Hs.192854 NM_033046 HPRD:03795 RTKN - rhotekin protein-coding 13-PTNLD9-TUMOR_peak_10562 chr11 72525093 72525228 + 6.44982 NA promoter-TSS (NM_033388) promoter-TSS (NM_033388) -291 NM_033388 89849 Hs.653186 NM_033388 HPRD:10959 ATG16L2 ATG16B|WDR80 autophagy related 16-like 2 (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_11962 chr12 6422083 6422307 + 6.44982 NA 5' UTR (NM_001144857, exon 1 of 15) 5' UTR (NM_001144857, exon 1 of 15) 378 NM_001144857 55200 Hs.631660 NM_018173 HPRD:07692 PLEKHG6 MyoGEF pleckstrin homology domain containing, family G (with RhoGef domain) member 6 protein-coding 13-PTNLD9-TUMOR_peak_26655 chr2 39719414 39719536 + 6.44952 NA intron (NR_037875, intron 3 of 5) intron (NR_037875, intron 3 of 5) 54918 NR_037875 728730 Hs.655344 NR_037875 ENSG00000231312 LOC728730 - uncharacterized LOC728730 ncRNA 13-PTNLD9-TUMOR_peak_8825 chr11 2846693 2846891 + 6.44952 NA intron (NM_181798, intron 15 of 15) intron (NM_181798, intron 15 of 15) -44471 NR_024627 55539 Hs.127821 NM_018722 HPRD:17174 KCNQ1DN BWRT|HSA404617 KCNQ1 downstream neighbor (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_48724 chr7 105172960 105173058 + 6.44952 NA intron (NM_021930, intron 1 of 14) intron (NM_021930, intron 1 of 14) 477 NM_021930 60561 Hs.531388 NM_021930 HPRD:15250 RINT1 RINT-1 RAD50 interactor 1 protein-coding 13-PTNLD9-TUMOR_peak_29470 chr2 198557724 198558278 + 6.44952 NA Intergenic L1PA2|LINE|L1 -12027 NM_138395 92935 Hs.744330 NM_138395 HPRD:14363 MARS2 MetRS|mtMetRS methionyl-tRNA synthetase 2, mitochondrial protein-coding 13-PTNLD9-TUMOR_peak_23112 chr18 45853398 45853559 + 6.44952 NA Intergenic Intergenic -189798 NM_001039360 201501 Hs.515388 NM_001039360 ENSG00000184828 ZBTB7C APM-1|APM1|ZBTB36|ZNF857C zinc finger and BTB domain containing 7C protein-coding 13-PTNLD9-TUMOR_peak_537 chr1 16694097 16694228 + 6.44952 NA intron (NR_073500, intron 1 of 1) CpG 637 NR_073500 26099 Hs.252967 NM_001114600 HPRD:13213 SZRD1 C1orf144 SUZ RNA binding domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_15277 chr14 21788427 21788588 + 6.43959 NA intron (NM_020366, intron 11 of 23) AluYf4|SINE|Alu 32371 NM_020366 57096 Hs.126035 NM_020366 HPRD:05673 RPGRIP1 CORD13|LCA6|RGI1|RGRIP|RPGRIP|RPGRIP1d retinitis pigmentosa GTPase regulator interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_14068 chr12 121148388 121148549 + 6.43959 NA exon (NM_001080533, exon 1 of 5) exon (NM_001080533, exon 1 of 5) 230 NM_001080533 84747 Hs.127610 NM_032661 ENSG00000175970 UNC119B POC7B unc-119 homolog B (C. elegans) protein-coding 13-PTNLD9-TUMOR_peak_5077 chr1 203320244 203320464 + 6.43959 NA non-coding (NR_103757, exon 1 of 2) non-coding (NR_103757, exon 1 of 2) 203 NM_002023 2331 Hs.519168 NM_002023 HPRD:02591 FMOD FM|SLRR2E fibromodulin protein-coding 13-PTNLD9-TUMOR_peak_29580 chr2 203586468 203586628 + 6.43959 NA intron (NM_173511, intron 2 of 7) AluJb|SINE|Alu 86647 NM_173511 150864 Hs.471130 NM_173511 HPRD:12445 FAM117B ALS2CR13 family with sequence similarity 117, member B protein-coding 13-PTNLD9-TUMOR_peak_14846 chr13 72965118 72965382 + 6.43959 NA Intergenic Intergenic -336637 NM_024808 79866 Hs.643464 NM_024808 HPRD:13389 BORA C13orf34 bora, aurora kinase A activator protein-coding 13-PTNLD9-TUMOR_peak_54829 chr9 130749468 130749854 + 6.43959 NA Intergenic Intergenic -6849 NM_001035254 399665 Hs.535972 NM_203305 HPRD:13262 FAM102A C9orf132|EEIG1|SYM-3A|bA203J24.7 family with sequence similarity 102, member A protein-coding 13-PTNLD9-TUMOR_peak_41891 chr5 123932629 123932765 + 6.43959 NA Intergenic Intergenic 148108 NM_020747 57507 Hs.266616 NM_020747 HPRD:18357 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 13-PTNLD9-TUMOR_peak_52141 chr8 133747251 133747413 + 6.43959 NA intron (NM_144649, intron 5 of 9) intron (NM_144649, intron 5 of 9) 25582 NM_144649 137835 Hs.293842 NM_144649 HPRD:08154 TMEM71 - transmembrane protein 71 protein-coding 13-PTNLD9-TUMOR_peak_28889 chr2 161150223 161150328 + 6.43959 NA intron (NM_016836, intron 6 of 13) intron (NM_016836, intron 6 of 13) -21869 NR_103775 100505984 Hs.729532 NR_103775 ENSG00000115221 LOC100505984 - uncharacterized LOC100505984 ncRNA 13-PTNLD9-TUMOR_peak_10386 chr11 67746378 67746484 + 6.43959 NA Intergenic HERVE-int|LTR|ERV1 25164 NM_030930 81622 Hs.502989 NM_030930 HPRD:12191 UNC93B1 IIAE1|UNC93|UNC93B|Unc-93B1 unc-93 homolog B1 (C. elegans) protein-coding 13-PTNLD9-TUMOR_peak_13384 chr12 77005485 77005681 + 6.43959 NA Intergenic MLT1G|LTR|ERVL-MaLR -51994 NM_001003712 114882 Hs.430849 NM_020841 HPRD:09478 OSBPL8 MST120|MSTP120|ORP8|OSBP10 oxysterol binding protein-like 8 protein-coding 13-PTNLD9-TUMOR_peak_15470 chr14 32419980 32420191 + 6.43959 NA Intergenic Intergenic 125820 NR_027263 84837 Hs.496755 NM_032751 ENSG00000258655 ARHGAP5-AS1 C14orf128 ARHGAP5 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_39111 chr4 114143460 114143605 + 6.43959 NA intron (NM_020977, intron 4 of 44) intron (NM_020977, intron 4 of 44) 70094 NR_107049 102465878 NR_107049 MIR8082 hsa-mir-8082 microRNA 8082 ncRNA 13-PTNLD9-TUMOR_peak_11524 chr11 125034745 125034912 + 6.43959 NA promoter-TSS (NR_125759) promoter-TSS (NR_125759) 269 NM_022062 63876 Hs.278564 NM_022062 HPRD:17857 PKNOX2 PREP2 PBX/knotted 1 homeobox 2 protein-coding 13-PTNLD9-TUMOR_peak_17214 chr15 45410397 45410552 + 6.43959 NA TTS (NM_001276266) TTS (NM_001276266) 3951 NM_207581 405753 Hs.497987 NM_207581 HPRD:14224 DUOXA2 SIMNIPHOM|TDH5 dual oxidase maturation factor 2 protein-coding 13-PTNLD9-TUMOR_peak_33677 chr3 9268082 9268291 + 6.43959 NA intron (NM_001033117, intron 1 of 21) L3|LINE|CR1 9607 NR_103443 100288831 Hs.694646 NR_103443 SRGAP3-AS3 - SRGAP3 antisense RNA 3 ncRNA 13-PTNLD9-TUMOR_peak_52723 chr9 7689532 7689647 + 6.43959 NA Intergenic Intergenic 110210 NM_033428 90871 Hs.7517 NM_033428 HPRD:12939 TMEM261 C9orf123 transmembrane protein 261 protein-coding 13-PTNLD9-TUMOR_peak_35721 chr3 126006783 126006937 + 6.43959 NA Intergenic CpG 69376 NM_014079 28999 Hs.272215 NM_014079 HPRD:07568 KLF15 KKLF Kruppel-like factor 15 protein-coding 13-PTNLD9-TUMOR_peak_46344 chr6 152283041 152283193 + 6.43959 NA intron (NM_001291230, intron 5 of 8) L2a|LINE|L2 154303 NM_000125 2099 Hs.208124 NM_000125 HPRD:00589 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_10651 chr11 75209808 75209971 + 6.43813 NA intron (NM_030792, intron 1 of 16) intron (NM_030792, intron 1 of 16) 26710 NM_030792 81544 Hs.503297 NM_030792 HPRD:15159 GDPD5 GDE2|PP1665 glycerophosphodiester phosphodiesterase domain containing 5 protein-coding 13-PTNLD9-TUMOR_peak_40876 chr5 54455896 54456022 + 6.43813 NA promoter-TSS (NM_001008397) promoter-TSS (NM_001008397) -25 NM_001008397 493869 Hs.289044 NM_001008397 GPX8 EPLA847|GPx-8|GSHPx-8|UNQ847 glutathione peroxidase 8 (putative) protein-coding 13-PTNLD9-TUMOR_peak_39420 chr4 140216709 140216804 + 6.43813 NA intron (NM_001184989, intron 3 of 5) CpG 5608 NM_001184991 4717 Hs.84549 NM_002494 HPRD:11959 NDUFC1 KFYI NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa protein-coding 13-PTNLD9-TUMOR_peak_7199 chr10 45496948 45497274 + 6.43813 NA promoter-TSS (NM_001039380) promoter-TSS (NM_001039380) -641 NM_001039380 220979 Hs.707791 NM_001039380 ENSG00000165511 C10orf25 - chromosome 10 open reading frame 25 protein-coding 13-PTNLD9-TUMOR_peak_13496 chr12 95009752 95009896 + 6.43813 NA 5' UTR (NM_001301036, exon 1 of 4) 5' UTR (NM_001301036, exon 1 of 4) 103 NM_001301036 57458 Hs.370410 NM_020698 HPRD:15519 TMCC3 - transmembrane and coiled-coil domain family 3 protein-coding 13-PTNLD9-TUMOR_peak_51601 chr8 110610050 110610209 + 6.43813 NA intron (NM_001099754, intron 3 of 6) intron (NM_001099754, intron 3 of 6) 45290 NM_001099756 55638 Hs.390738 NM_017786 HPRD:07902 SYBU GOLSYN|OCSYN|SNPHL syntabulin (syntaxin-interacting) protein-coding 13-PTNLD9-TUMOR_peak_51538 chr8 106331706 106331813 + 6.43813 NA intron (NM_012082, intron 1 of 7) CpG 612 NM_012082 23414 Hs.431009 NM_012082 HPRD:04737 ZFPM2 DIH3|FOG2|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 13-PTNLD9-TUMOR_peak_37534 chr4 650594 650818 + 6.43813 NA exon (NM_001145292, exon 7 of 20) exon (NM_001145292, exon 7 of 20) 3740 NM_001145292 5158 Hs.623810 NM_000283 HPRD:01571 PDE6B CSNB3|CSNBAD2|PDEB|RP40|rd1 phosphodiesterase 6B, cGMP-specific, rod, beta protein-coding 13-PTNLD9-TUMOR_peak_24875 chr19 38506543 38506690 + 6.43813 NA intron (NM_015073, intron 1 of 21) MER45B|DNA|hAT-Tip100 108755 NM_015073 23094 Hs.655502 NM_015073 HPRD:18755 SIPA1L3 SPAL3 signal-induced proliferation-associated 1 like 3 protein-coding 13-PTNLD9-TUMOR_peak_3924 chr1 156232866 156232980 + 6.43813 NA intron (NM_015327, intron 13 of 21) intron (NM_015327, intron 13 of 21) -15015 NM_001272113 79957 Hs.235873 NM_024897 HPRD:17820 PAQR6 - progestin and adipoQ receptor family member VI protein-coding 13-PTNLD9-TUMOR_peak_49820 chr7 156696349 156696479 + 6.43813 NA Intergenic Intergenic -10512 NM_022458 64327 Hs.209989 NM_022458 HPRD:05700 LMBR1 ACHP|C7orf2|DIF14|PPD2|TPT|ZRS limb development membrane protein 1 protein-coding 13-PTNLD9-TUMOR_peak_32900 chr22 22978804 22979001 + 6.43809 NA intron (NR_024591, intron 5 of 9) intron (NR_024591, intron 5 of 9) 8110 NR_024591 25812 Hs.367764 NR_024591 POM121L1P POM121L1 POM121 transmembrane nucleoporin-like 1, pseudogene pseudo 13-PTNLD9-TUMOR_peak_53529 chr9 70489507 70489681 + 6.43727 NA intron (NR_104600, intron 1 of 3) MIRc|SINE|MIR 617 NM_001024916 220869 Hs.355950 NM_001024916 HPRD:14134 CBWD5 DC36 COBW domain containing 5 protein-coding 13-PTNLD9-TUMOR_peak_10147 chr11 64071901 64072385 + 6.43712 NA promoter-TSS (NM_001282451) promoter-TSS (NM_001282451) -857 NM_001282451 2101 Hs.110849 NM_004451 HPRD:07210 ESRRA ERR1|ERRa|ERRalpha|ESRL1|NR3B1 estrogen-related receptor alpha protein-coding 13-PTNLD9-TUMOR_peak_18747 chr16 22201347 22201566 + 6.43712 NA Intergenic CpG -16136 NM_013302 29904 Hs.498892 NM_013302 EEF2K HSU93850|eEF-2K eukaryotic elongation factor-2 kinase protein-coding 13-PTNLD9-TUMOR_peak_50664 chr8 38793220 38793487 + 6.43712 NA intron (NM_021623, intron 2 of 12) MIRc|SINE|MIR 34600 NM_021623 59339 Hs.369123 NM_021623 ENSG00000169499 PLEKHA2 TAPP2 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 2 protein-coding 13-PTNLD9-TUMOR_peak_18205 chr16 1823424 1823598 + 6.43712 NA promoter-TSS (NM_023936) promoter-TSS (NM_023936) 282 NM_001257370 197342 Hs.7247 NM_001010865 HPRD:16859 EME2 SLX2B|gs125 essential meiotic structure-specific endonuclease subunit 2 protein-coding 13-PTNLD9-TUMOR_peak_45287 chr6 52441979 52442241 + 6.42880 NA promoter-TSS (NR_103447) promoter-TSS (NR_103447) 14 NR_103447 401264 Hs.544586 NR_103446 ENSG00000225791 TRAM2-AS1 - TRAM2 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_3593 chr1 151021018 151021168 + 6.42880 NA exon (NM_017860, exon 1 of 2) exon (NM_017860, exon 1 of 2) 834 NM_017860 54964 Hs.549171 NM_017860 HPRD:08625 C1orf56 MENT chromosome 1 open reading frame 56 protein-coding 13-PTNLD9-TUMOR_peak_48631 chr7 102072237 102072449 + 6.42709 NA Intergenic Intergenic -1634 NM_001126340 80228 Hs.363308 NM_032831 HPRD:09860 ORAI2 C7orf19|CBCIP2|MEM142B|TMEM142B ORAI calcium release-activated calcium modulator 2 protein-coding 13-PTNLD9-TUMOR_peak_31764 chr20 60951566 60951793 + 6.42709 NA Intergenic Intergenic -9311 NM_005560 3911 Hs.473256 NM_005560 HPRD:03020 LAMA5 - laminin, alpha 5 protein-coding 13-PTNLD9-TUMOR_peak_3873 chr1 155532237 155532596 + 6.42473 NA promoter-TSS (NM_018489) promoter-TSS (NM_018489) -92 NM_018489 55870 Hs.491060 NM_018489 HPRD:06416 ASH1L ASH1|ASH1L1|KMT2H ash1 (absent, small, or homeotic)-like (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_29672 chr2 208104928 208105061 + 6.42207 NA intron (NR_110283, intron 2 of 3) intron (NR_110283, intron 2 of 3) 14046 NR_110283 101927865 Hs.574609 NR_110283 ENSG00000234902 LOC101927865 - uncharacterized LOC101927865 ncRNA 13-PTNLD9-TUMOR_peak_53577 chr9 72658776 72659032 + 6.42207 NA 5' UTR (NM_153267, exon 1 of 14) 5' UTR (NM_153267, exon 1 of 14) 407 NM_153267 256691 Hs.547172 NM_153267 HPRD:14353 MAMDC2 - MAM domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_44584 chr6 31879297 31879397 + 6.42207 NA intron (NM_001178063, intron 1 of 13).3 MER5A1|DNA|hAT-Charlie -9578 NM_181842 221527 Hs.234027 NM_181842 HPRD:15691 ZBTB12 Bat9|C6orf46|D6S59E|G10|NG35 zinc finger and BTB domain containing 12 protein-coding 13-PTNLD9-TUMOR_peak_12142 chr12 11802008 11802127 + 6.42207 NA promoter-TSS (NM_001987) promoter-TSS (NM_001987) -721 NM_001987 2120 Hs.504765 NM_001987 HPRD:15976 ETV6 TEL|TEL/ABL ets variant 6 protein-coding 13-PTNLD9-TUMOR_peak_35890 chr3 129898625 129898731 + 6.42207 NA Intergenic HERVS71-int|LTR|ERV1 -32985 NR_027898 646300 Hs.170475 NR_027898 COL6A4P2 COL6A4 collagen, type VI, alpha 4 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_19293 chr16 49734479 49734592 + 6.42207 NA intron (NM_015069, intron 3 of 7) intron (NM_015069, intron 3 of 7) 122114 NM_015069 23090 Hs.530930 NM_015069 HPRD:05189 ZNF423 Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104 zinc finger protein 423 protein-coding 13-PTNLD9-TUMOR_peak_16188 chr14 70722083 70722258 + 6.42111 NA Intergenic LTR12C|LTR|ERV1 -7652 NR_003951 145241 Hs.712468 NR_003951 ENSG00000235812 ADAM21P1 ADAM21P ADAM metallopeptidase domain 21 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_43141 chr5 175378661 175378830 + 6.42111 NA Intergenic Intergenic 16573 NM_032361 84321 Hs.484227 NM_032361 HPRD:09497 THOC3 THO3|hTREX45 THO complex 3 protein-coding 13-PTNLD9-TUMOR_peak_19855 chr16 80578377 80578505 + 6.42111 NA intron (NM_130897, intron 2 of 3) intron (NM_130897, intron 2 of 3) 3587 NM_130897 83657 Hs.98849 NM_130897 HPRD:06204 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein, light chain, roadblock-type 2 protein-coding 13-PTNLD9-TUMOR_peak_34246 chr3 36566863 36567139 + 6.42111 NA intron (NM_003149, intron 8 of 10) intron (NM_003149, intron 8 of 10) 145022 NM_003149 6769 Hs.56045 NM_003149 HPRD:11890 STAC STAC1 SH3 and cysteine rich domain protein-coding 13-PTNLD9-TUMOR_peak_7200 chr10 45655727 45655886 + 6.42111 NA intron (NR_033891, intron 2 of 7) MER44D|DNA|TcMar-Tigger -3656 NR_036112 100422988 NR_036112 miRBase:MI0014184 MIR3156-1 - microRNA 3156-1 ncRNA 13-PTNLD9-TUMOR_peak_25042 chr19 41945755 41945949 + 6.42111 NA promoter-TSS (NM_018035) promoter-TSS (NM_018035) -9 NM_001167869 55101 Hs.351099 NM_018035 HPRD:07655 ATP5SL - ATP5S-like protein-coding 13-PTNLD9-TUMOR_peak_53978 chr9 93927082 93927184 + 6.42111 NA Intergenic Intergenic -89719 NR_033912 100129316 Hs.458154 NR_033912 LOC100129316 - uncharacterized LOC100129316 ncRNA 13-PTNLD9-TUMOR_peak_24256 chr19 16152456 16152599 + 6.42111 NA non-coding (NR_110321, exon 5 of 5) non-coding (NR_110321, exon 5 of 5) 7597 NR_110321 148231 Hs.631621 NR_024335 HPRD:08056 LINC00905 - long intergenic non-protein coding RNA 905 ncRNA 13-PTNLD9-TUMOR_peak_27227 chr2 71098769 71098998 + 6.42111 NA Intergenic CpG -28837 NM_012476 25806 Hs.249170 NM_012476 HPRD:05051 VAX2 DRES93 ventral anterior homeobox 2 protein-coding 13-PTNLD9-TUMOR_peak_21857 chr17 66050376 66050508 + 6.42111 NA Intergenic Intergenic 18594 NM_002266 3838 Hs.594238 NM_002266 HPRD:02818 KPNA2 IPOA1|QIP2|RCH1|SRP1alpha karyopherin alpha 2 (RAG cohort 1, importin alpha 1) protein-coding 13-PTNLD9-TUMOR_peak_14288 chr12 127873643 127873804 + 6.42111 NA Intergenic Intergenic -49106 NR_110057 101927616 Hs.637827 NR_110057 ENSG00000256362 LOC101927616 - uncharacterized LOC101927616 ncRNA 13-PTNLD9-TUMOR_peak_38759 chr4 84299887 84300196 + 6.42111 NA Intergenic LTR18B|LTR|ERVL -43735 NM_006665 10855 Hs.44227 NM_006665 HPRD:05286 HPSE HPA|HPA1|HPR1|HPSE1|HSE1 heparanase protein-coding 13-PTNLD9-TUMOR_peak_8379 chr10 116031641 116031748 + 6.42111 NA intron (NM_001272046, intron 5 of 13) intron (NM_001272046, intron 5 of 13) 32681 NM_001272046 340706 Hs.197741 NM_198496 VWA2 AMACO|CCSP-2|NET42 von Willebrand factor A domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_12115 chr12 10377978 10378323 + 6.42111 NA Intergenic LTR12C|LTR|ERV1 12661 NM_031412 23710 Hs.524250 NM_031412 HPRD:07601 GABARAPL1 APG8-LIKE|APG8L|ATG8|ATG8B|ATG8L|GEC1 GABA(A) receptor-associated protein like 1 protein-coding 13-PTNLD9-TUMOR_peak_10728 chr11 77928070 77928184 + 6.42111 NA 3' UTR (NM_080491, exon 10 of 10) 3' UTR (NM_080491, exon 10 of 10) 28269 NM_020798 57558 Hs.531249 NM_020798 ENSG00000118369 USP35 - ubiquitin specific peptidase 35 protein-coding 13-PTNLD9-TUMOR_peak_15393 chr14 24861169 24861412 + 6.42111 NA Intergenic Intergenic -6702 NM_025081 57523 Hs.288348 NM_025081 ENSG00000205978 NYNRIN CGIN1|KIAA1305 NYN domain and retroviral integrase containing protein-coding 13-PTNLD9-TUMOR_peak_50271 chr8 22068750 22068978 + 6.41738 NA intron (NR_033403, intron 19 of 19) MIRc|SINE|MIR 20987 NM_001099335 9796 Hs.334688 NM_014759 HPRD:16345 PHYHIP DYRK1AP3|PAHX-AP|PAHXAP1 phytanoyl-CoA 2-hydroxylase interacting protein protein-coding 13-PTNLD9-TUMOR_peak_2797 chr1 110522382 110522531 + 6.41738 NA Intergenic Intergenic -4931 NM_006621 10768 Hs.743973 NM_006621 HPRD:07613 AHCYL1 DCAL|IRBIT|PPP1R78|PRO0233|XPVKONA adenosylhomocysteinase-like 1 protein-coding 13-PTNLD9-TUMOR_peak_27313 chr2 74692293 74692612 + 6.40762 NA promoter-TSS (NM_006302) promoter-TSS (NM_006302) 85 NM_001146158 7841 Hs.516119 NM_006302 HPRD:03214 MOGS CDG2B|CWH41|DER7|GCS1 mannosyl-oligosaccharide glucosidase protein-coding 13-PTNLD9-TUMOR_peak_31564 chr20 52271587 52271681 + 6.40762 NA Intergenic Intergenic -71998 NM_006526 7764 Hs.155040 NM_006526 HPRD:04272 ZNF217 ZABC1 zinc finger protein 217 protein-coding 13-PTNLD9-TUMOR_peak_17117 chr15 41952672 41952968 + 6.40762 NA intron (NM_001080541, intron 1 of 22) CpG 210 NM_001080541 23269 Hs.187569 NM_001080541 ENSG00000174197 MGA MAD5|MXD5 MGA, MAX dimerization protein protein-coding 13-PTNLD9-TUMOR_peak_4620 chr1 181007691 181007820 + 6.40762 NA intron (NM_001195035, intron 2 of 4) intron (NM_001195035, intron 2 of 4) 5194 NM_001194999 3140 Hs.13500 NM_001531 HPRD:09012 MR1 HLALS major histocompatibility complex, class I-related protein-coding 13-PTNLD9-TUMOR_peak_22357 chr17 80645467 80645571 + 6.40762 NA intron (NM_006822, intron 1 of 5) intron (NM_006822, intron 1 of 5) 11079 NM_006822 10966 Hs.484068 NM_006822 RAB40B RAR|SEC4L RAB40B, member RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_10020 chr11 61560004 61560141 + 6.40426 NA promoter-TSS (NM_014206) promoter-TSS (NM_014206) 13 NM_014206 746 Hs.437779 NM_014206 HPRD:12602 TMEM258 C11orf10 transmembrane protein 258 protein-coding 13-PTNLD9-TUMOR_peak_20749 chr17 26663282 26663479 + 6.40426 NA promoter-TSS (NM_001267778) promoter-TSS (NM_001267778) 832 NM_021137 7126 Hs.76090 NM_021137 HPRD:01856 TNFAIP1 B12|B61|BTBD34|EDP1|hBACURD2 tumor necrosis factor, alpha-induced protein 1 (endothelial) protein-coding 13-PTNLD9-TUMOR_peak_10561 chr11 72524339 72524445 + 6.40426 NA Intergenic Intergenic -1059 NM_033388 89849 Hs.653186 NM_033388 HPRD:10959 ATG16L2 ATG16B|WDR80 autophagy related 16-like 2 (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_48516 chr7 100070116 100070297 + 6.40410 NA intron (NM_030935, intron 3 of 4) intron (NM_030935, intron 3 of 4) 6696 NM_030935 81628 Hs.469798 NM_030935 HPRD:18231 TSC22D4 THG-1|THG1|TILZ2 TSC22 domain family, member 4 protein-coding 13-PTNLD9-TUMOR_peak_25226 chr19 47693506 47693640 + 6.40124 NA intron (NM_001145713, intron 6 of 6) intron (NM_001145713, intron 6 of 6) -36626 NR_036158 100422899 NR_036158 miRBase:MI0014235 MIR3190 - microRNA 3190 ncRNA 13-PTNLD9-TUMOR_peak_19795 chr16 76673781 76674039 + 6.40124 NA intron (NR_110934, intron 2 of 3) MER66C|LTR|ERV1 5015 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LOC101928203 - uncharacterized LOC101928203 ncRNA 13-PTNLD9-TUMOR_peak_600 chr1 20539562 20539656 + 6.40124 NA Intergenic Intergenic -26630 NR_110078 101928017 Hs.550803 NR_110078 UBXN10-AS1 - UBXN10 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_14987 chr13 99097645 99097805 + 6.40124 NA intron (NM_005766, intron 24 of 26) intron (NM_005766, intron 24 of 26) 76654 NM_003576 8428 Hs.508514 NM_003576 HPRD:10385 STK24 HEL-S-95|MST3|MST3B|STE20|STK3 serine/threonine kinase 24 protein-coding 13-PTNLD9-TUMOR_peak_19644 chr16 68824041 68824413 + 6.40124 NA intron (NM_004360, intron 2 of 15) intron (NM_004360, intron 2 of 15) 53032 NM_004360 999 Hs.461086 NM_004360 HPRD:01885 CDH1 Arc-1|CD324|CDHE|ECAD|LCAM|UVO cadherin 1, type 1, E-cadherin (epithelial) protein-coding 13-PTNLD9-TUMOR_peak_8136 chr10 99799554 99799772 + 6.40124 NA Intergenic Intergenic -9078 NM_018058 55118 Hs.500736 NM_018058 HPRD:10447 CRTAC1 ASPIC|ASPIC1|CEP-68 cartilage acidic protein 1 protein-coding 13-PTNLD9-TUMOR_peak_13424 chr12 84497775 84497901 + 6.40124 NA Intergenic HERVK11-int|LTR|ERVK 808770 NM_018057 55117 Hs.44424 NM_018057 HPRD:12141 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 (neutral amino acid transporter), member 15 protein-coding 13-PTNLD9-TUMOR_peak_36853 chr3 178376746 178376933 + 6.40124 NA intron (NM_001278911, intron 1 of 4) intron (NM_001278911, intron 1 of 4) 100351 NM_001278911 10242 Hs.478368 NM_005832 HPRD:05557 KCNMB2 - potassium large conductance calcium-activated channel, subfamily M, beta member 2 protein-coding 13-PTNLD9-TUMOR_peak_21814 chr17 63781335 63781629 + 6.40124 NA intron (NM_145036, intron 21 of 26) L1MB7|LINE|L1 41179 NM_001037325 201134 Hs.408676 NM_145036 HPRD:11336 CEP112 CCDC46|MACOCO centrosomal protein 112kDa protein-coding 13-PTNLD9-TUMOR_peak_7317 chr10 49742116 49742348 + 6.40124 NA intron (NR_045675, intron 4 of 10) intron (NR_045675, intron 4 of 10) -40540 NM_001256026 58504 Hs.655672 NM_021226 HPRD:12476 ARHGAP22 RhoGAP2|RhoGap22 Rho GTPase activating protein 22 protein-coding 13-PTNLD9-TUMOR_peak_32593 chr21 47156353 47156883 + 6.40124 NA Intergenic Intergenic 99715 NR_038876 100129027 Hs.689591 NR_038876 ENSG00000205424 LOC100129027 - uncharacterized LOC100129027 ncRNA 13-PTNLD9-TUMOR_peak_31402 chr20 48671389 48671571 + 6.40124 NA Intergenic Intergenic -13314 NR_051976 100887755 Hs.195705 NR_051976 TRERNA1 LINC00651|treRNA translation regulatory long non-coding RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_16842 chr15 27136649 27136750 + 6.40124 NA intron (NM_000810, intron 6 of 10) intron (NM_000810, intron 6 of 10) 24426 NM_001165037 2558 Hs.24969 NM_000810 HPRD:08840 GABRA5 - gamma-aminobutyric acid (GABA) A receptor, alpha 5 protein-coding 13-PTNLD9-TUMOR_peak_51684 chr8 118459655 118459943 + 6.40124 NA Intergenic Intergenic -73153 NM_001282986 90390 Hs.492612 NM_080651 HPRD:11631 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 13-PTNLD9-TUMOR_peak_40617 chr5 36537866 36537992 + 6.40124 NA Intergenic LTR16E1|LTR|ERVL -68528 NM_001166696 6507 Hs.481918 NM_004172 HPRD:02523 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 (glial high affinity glutamate transporter), member 3 protein-coding 13-PTNLD9-TUMOR_peak_46599 chr6 170709159 170709301 + 6.40124 NA intron (NM_001286380, intron 9 of 10) intron (NM_001286380, intron 9 of 10) 69381 NR_039787 100616430 NR_039787 MIR4644 - microRNA 4644 ncRNA 13-PTNLD9-TUMOR_peak_12332 chr12 25801490 25801697 + 6.40124 NA promoter-TSS (NM_001145727) promoter-TSS (NM_001145727) -97 NM_001145727 160492 Hs.44647 NM_152590 HPRD:08768 LMNTD1 IFLTD1|PAS1C1 lamin tail domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_7832 chr10 79848305 79848451 + 6.40124 NA Intergenic L1PA2|LINE|L1 54860 NM_033022 6229 Hs.280130 NM_001026 HPRD:03877 RPS24 DBA3|S24 ribosomal protein S24 protein-coding 13-PTNLD9-TUMOR_peak_10632 chr11 74654179 74654399 + 6.40124 NA intron (NM_001270380, intron 2 of 14) intron (NM_001270380, intron 2 of 14) 5943 NM_001270380 143570 Hs.370145 NM_182969 ENSG00000166435 XRRA1 - X-ray radiation resistance associated 1 protein-coding 13-PTNLD9-TUMOR_peak_16553 chr14 99738582 99738703 + 6.40124 NA promoter-TSS (NM_138576) promoter-TSS (NM_138576) -592 NM_001282237 64919 Hs.709690 NM_022898 HPRD:05950 BCL11B ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|RIT1|ZNF856B|hRIT1-alpha B-cell CLL/lymphoma 11B (zinc finger protein) protein-coding 13-PTNLD9-TUMOR_peak_40070 chr4 189048763 189048888 + 6.40124 NA Intergenic Intergenic -11773 NM_178556 339976 Hs.348618 NM_178556 HPRD:08774 TRIML1 RNF209 tripartite motif family-like 1 protein-coding 13-PTNLD9-TUMOR_peak_26930 chr2 53682258 53682582 + 6.40124 NA Intergenic HERVL32-int|LTR|ERVL -312509 NM_001008708 494143 Hs.585944 NM_001008708 HPRD:17418 CHAC2 - ChaC, cation transport regulator homolog 2 (E. coli) protein-coding 13-PTNLD9-TUMOR_peak_54305 chr9 107889470 107889724 + 6.40124 NA Intergenic AluSc|SINE|Alu -117297 NM_080546 23446 Hs.573495 NM_022109 HPRD:16197 SLC44A1 CD92|CDW92|CHTL1|CTL1 solute carrier family 44 (choline transporter), member 1 protein-coding 13-PTNLD9-TUMOR_peak_8234 chr10 104532054 104532309 + 6.40124 NA intron (NM_001083913, intron 1 of 3) AluSx|SINE|Alu -3707 NM_017787 54838 Hs.500897 NM_017787 HPRD:12567 WBP1L C10orf26|OPA1L|OPAL1 WW domain binding protein 1-like protein-coding 13-PTNLD9-TUMOR_peak_11312 chr11 116338660 116338797 + 6.40124 NA Intergenic MIRb|SINE|MIR 304986 NM_032725 84811 Hs.437341 NM_032725 HPRD:11307 BUD13 Cwc26|fSAP71 BUD13 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_22275 chr17 79533671 79533857 + 6.40124 NA intron (NM_017921, intron 15 of 16) intron (NM_017921, intron 15 of 16) -14335 NM_025161 80233 Hs.313905 NM_025161 HPRD:07982 C17orf70 FAAP100 chromosome 17 open reading frame 70 protein-coding 13-PTNLD9-TUMOR_peak_3232 chr1 144339274 144339391 + 6.39628 NA intron (NR_111953, intron 2 of 3) intron (NR_111953, intron 2 of 3) 1427 NR_109754 728855 Hs.456578 NR_024510 ENSG00000235398 LINC00623 CH17-118O6.2 long intergenic non-protein coding RNA 623 ncRNA 13-PTNLD9-TUMOR_peak_33599 chr3 5027613 5027826 + 6.39588 NA TTS (NM_003670) TTS (NM_003670) 6622 NM_003670 8553 Hs.744856 NM_003670 HPRD:16050 BHLHE40 BHLHB2|DEC1|HLHB2|SHARP-2|STRA13|Stra14 basic helix-loop-helix family, member e40 protein-coding 13-PTNLD9-TUMOR_peak_50283 chr8 22251285 22251410 + 6.39588 NA intron (NM_001135153, intron 1 of 8) AluJo|SINE|Alu 26297 NM_001135153 23516 Hs.491232 NM_015359 HPRD:12288 SLC39A14 LZT-Hs4|NET34|ZIP14|cig19 solute carrier family 39 (zinc transporter), member 14 protein-coding 13-PTNLD9-TUMOR_peak_43547 chr6 3750308 3750436 + 6.39588 NA intron (NM_183373, intron 1 of 4) intron (NM_183373, intron 1 of 4) 1874 NM_183373 221749 Hs.484500 NM_183373 HPRD:12854 PXDC1 C6orf145 PX domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_19976 chr16 85387580 85387726 + 6.39526 NA Intergenic L2c|LINE|L2 -47722 NR_049816 100847022 NR_049816 miRBase:MI0017982 MIR5093 - microRNA 5093 ncRNA 13-PTNLD9-TUMOR_peak_16320 chr14 77385862 77386029 + 6.39526 NA Intergenic MIR3|SINE|MIR 93220 NM_194287 145497 Hs.147276 NM_194287 HPRD:12621 LRRC74A C14orf166B|LRRC74 leucine rich repeat containing 74A protein-coding 13-PTNLD9-TUMOR_peak_53795 chr9 85896289 85896462 + 6.39526 NA intron (NM_001244960, intron 13 of 13) intron (NM_001244960, intron 13 of 13) -14173 NM_001244962 257019 Hs.127535 NM_174938 HPRD:07402 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_11490 chr11 123524821 123525003 + 6.39526 NA 5' UTR (NM_018400, exon 1 of 6) 5' UTR (NM_018400, exon 1 of 6) 403 NM_018400 55800 Hs.4865 NM_018400 HPRD:10497 SCN3B ATFB16|BRGDA7|HSA243396|SCNB3 sodium channel, voltage-gated, type III, beta subunit protein-coding 13-PTNLD9-TUMOR_peak_36572 chr3 159482119 159482261 + 6.39403 NA TTS (NR_121669) TTS (NR_121669) 4211 NR_121669 100874433 Hs.601476 NR_121669 IQCJ-SCHIP1-AS1 uaz98 IQCJ-SCHIP1 readthrough antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_12614 chr12 44229740 44229871 + 6.38717 NA 5' UTR (NM_032256, exon 1 of 8) 5' UTR (NM_032256, exon 1 of 8) 141 NM_001286213 84216 Hs.444668 NM_032256 HPRD:13193 TMEM117 - transmembrane protein 117 protein-coding 13-PTNLD9-TUMOR_peak_20075 chr16 88509562 88509690 + 6.38717 NA Intergenic Intergenic -10388 NM_153813 161882 Hs.632218 NM_153813 ZFPM1 FOG|FOG1|ZC2HC11A|ZNF408|ZNF89A zinc finger protein, FOG family member 1 protein-coding 13-PTNLD9-TUMOR_peak_9277 chr11 19649560 19649673 + 6.38717 NA intron (NM_001111018, intron 1 of 37) intron (NM_001111018, intron 1 of 37) 52759 NR_039706 100616118 NR_039706 MIR4486 - microRNA 4486 ncRNA 13-PTNLD9-TUMOR_peak_51473 chr8 103613014 103613139 + 6.38717 NA Intergenic CpG 49228 NM_024410 4956 Hs.159274 NM_024410 HPRD:01687 ODF1 CT133|HSPB10|ODF|ODF2|ODF27|ODFP|ODFPG|ODFPGA|ODFPGB|RT7|SODF outer dense fiber of sperm tails 1 protein-coding 13-PTNLD9-TUMOR_peak_43401 chr6 1088638 1088732 + 6.38717 NA intron (NR_027115, intron 1 of 4) intron (NR_027115, intron 1 of 4) 12882 NR_027116 285768 Hs.209463 NR_027115 LOC285768 - uncharacterized LOC285768 ncRNA 13-PTNLD9-TUMOR_peak_19758 chr16 74777944 74778095 + 6.38717 NA intron (NM_024306, intron 1 of 6) intron (NM_024306, intron 1 of 6) 30710 NM_024306 79152 Hs.461329 NM_024306 HPRD:16873 FA2H FAAH|FAH1|FAXDC1|SCS7|SPG35 fatty acid 2-hydroxylase protein-coding 13-PTNLD9-TUMOR_peak_39060 chr4 110287225 110287408 + 6.38717 NA Intergenic Intergenic -63517 NM_198721 84570 Hs.658842 NM_032518 HPRD:09886 COL25A1 AMY|CLAC|CLAC-P|CLACP collagen, type XXV, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_41811 chr5 115313807 115314001 + 6.38717 NA intron (NM_173800, intron 1 of 19) intron (NM_173800, intron 1 of 19) 15753 NM_173800 206338 Hs.98288 NM_173800 HPRD:07118 AQPEP APQ|LVRN laeverin protein-coding 13-PTNLD9-TUMOR_peak_16944 chr15 31643751 31643922 + 6.38717 NA intron (NM_015995, intron 1 of 1) intron (NM_015995, intron 1 of 1) 24753 NM_015995 51621 Hs.525752 NM_015995 HPRD:05620 KLF13 BTEB3|FKLF2|NSLP1|RFLAT-1|RFLAT1 Kruppel-like factor 13 protein-coding 13-PTNLD9-TUMOR_peak_26608 chr2 38003155 38003260 + 6.38717 NA Intergenic Intergenic 53647 NR_110011 101929559 Hs.468200 NR_110011 ENSG00000237803 LINC00211 NCRNA00211 long intergenic non-protein coding RNA 211 ncRNA 13-PTNLD9-TUMOR_peak_2546 chr1 94724497 94724744 + 6.38717 NA Intergenic Intergenic -21313 NM_004815 9411 Hs.483238 NM_004815 ARHGAP29 PARG1 Rho GTPase activating protein 29 protein-coding 13-PTNLD9-TUMOR_peak_31741 chr20 58638255 58638356 + 6.38717 NA intron (NM_173644, intron 2 of 3) intron (NM_173644, intron 2 of 3) 7325 NM_173644 284756 Hs.335319 NM_173644 HPRD:08749 C20orf197 - chromosome 20 open reading frame 197 protein-coding 13-PTNLD9-TUMOR_peak_39433 chr4 140572872 140572980 + 6.38717 NA Intergenic Intergenic -13996 NM_001204368 4258 Hs.81874 NM_002413 HPRD:03436 MGST2 GST2|MGST-II microsomal glutathione S-transferase 2 protein-coding 13-PTNLD9-TUMOR_peak_29206 chr2 178497908 178498018 + 6.38717 NA intron (NM_001077197, intron 20 of 20) intron (NM_001077197, intron 20 of 20) -14269 NM_152275 92104 Hs.128384 NM_152275 TTC30A - tetratricopeptide repeat domain 30A protein-coding 13-PTNLD9-TUMOR_peak_54835 chr9 130841390 130841640 + 6.38717 NA intron (NM_001006641, intron 1 of 9) intron (NM_001006641, intron 1 of 9) 11036 NM_001006641 114789 Hs.5476 NM_052901 HPRD:10573 SLC25A25 MCSC|PCSCL|SCAMC-2 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25 protein-coding 13-PTNLD9-TUMOR_peak_45707 chr6 90058203 90058424 + 6.38179 NA intron (NM_016021, intron 1 of 7) intron (NM_016021, intron 1 of 7) 4306 NM_016021 51465 Hs.163776 NM_016021 HPRD:15599 UBE2J1 HSPC153|HSPC205|HSU93243|NCUBE-1|NCUBE1|UBC6|Ubc6p ubiquitin-conjugating enzyme E2, J1 protein-coding 13-PTNLD9-TUMOR_peak_31345 chr20 47833778 47833921 + 6.37947 NA Intergenic LTR50|LTR|ERVL -1983 NM_017895 55661 Hs.65234 NM_017895 HPRD:10859 DDX27 DRS1|Drs1p|PP3241|RHLP|dJ686N3.1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 protein-coding 13-PTNLD9-TUMOR_peak_13832 chr12 110907034 110907169 + 6.37947 NA promoter-TSS (NM_001164372) promoter-TSS (NM_001164372) -575 NM_001164372 51184 Hs.634680 NM_016301 HPRD:17498 GPN3 ATPBD1C GPN-loop GTPase 3 protein-coding 13-PTNLD9-TUMOR_peak_4692 chr1 183134736 183134835 + 6.37947 NA Intergenic L1MC3|LINE|L1 -20389 NM_005562 3918 Hs.591484 NM_005562 HPRD:01031 LAMC2 B2T|BM600|CSF|EBR2|EBR2A|LAMB2T|LAMNB2 laminin, gamma 2 protein-coding 13-PTNLD9-TUMOR_peak_6880 chr10 32430016 32430245 + 6.37947 NA Intergenic Intergenic -84759 NM_004521 3799 Hs.327736 NM_004521 HPRD:07214 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 13-PTNLD9-TUMOR_peak_36592 chr3 160167514 160167637 + 6.37947 NA promoter-TSS (NM_173084) promoter-TSS (NM_173084) 51 NM_173084 286827 Hs.212957 NM_173084 HPRD:15568 TRIM59 MRF1|RNF104|TRIM57|TSBF1 tripartite motif containing 59 protein-coding 13-PTNLD9-TUMOR_peak_17518 chr15 68565158 68565369 + 6.37947 NA Intergenic MIR|SINE|MIR -4878 NM_015322 10116 Hs.362733 NM_015322 FEM1B F1A-ALPHA|F1AA|FEM1-beta fem-1 homolog b (C. elegans) protein-coding 13-PTNLD9-TUMOR_peak_44836 chr6 36952691 36952785 + 6.37947 NA intron (NM_014341, intron 1 of 11) intron (NM_014341, intron 1 of 11) 1589 NM_001271641 23787 Hs.485262 NM_014341 HPRD:14787 MTCH1 CGI-64|PIG60|PSAP|SLC25A49 mitochondrial carrier 1 protein-coding 13-PTNLD9-TUMOR_peak_21954 chr17 72874367 72874689 + 6.37947 NA exon (NM_178128, exon 6 of 6) exon (NM_178128, exon 6 of 6) -5372 NR_047576 2232 Hs.69745 NM_004110 HPRD:00060 FDXR ADXR ferredoxin reductase protein-coding 13-PTNLD9-TUMOR_peak_24223 chr19 15362642 15362917 + 6.37790 NA intron (NM_014299, intron 11 of 11) intron (NM_014299, intron 11 of 11) -18921 NM_001142886 79852 Hs.156457 NM_024794 HPRD:12410 EPHX3 ABHD9|EH3 epoxide hydrolase 3 protein-coding 13-PTNLD9-TUMOR_peak_44773 chr6 35417317 35417411 + 6.37790 NA Intergenic MER91B|DNA|hAT-Tip100 -2774 NM_021922 2178 Hs.302003 NM_021922 HPRD:02943 FANCE FACE|FAE Fanconi anemia, complementation group E protein-coding 13-PTNLD9-TUMOR_peak_36252 chr3 143305499 143305652 + 6.37790 NA intron (NM_173653, intron 6 of 15) intron (NM_173653, intron 6 of 15) 244487 NR_048544 100885796 Hs.581618 NR_048544 ENSG00000240012 SLC9A9-AS1 - SLC9A9 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_21395 chr17 47517340 47517585 + 6.37790 NA Intergenic Intergenic 21649 NR_110805 101927207 Hs.638402 NR_110805 ENSG00000249497 LOC101927207 - uncharacterized LOC101927207 ncRNA 13-PTNLD9-TUMOR_peak_25989 chr2 7005628 7005989 + 6.37790 NA exon (NM_207315, exon 1 of 5) exon (NM_207315, exon 1 of 5) 142 NM_207315 129607 Hs.7155 NM_207315 HPRD:11233 CMPK2 TMPK2|TYKi|UMP-CMPK2 cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial protein-coding 13-PTNLD9-TUMOR_peak_16663 chr14 105154536 105154639 + 6.37790 NA Intergenic Intergenic -1356 NM_032714 64423 Hs.24956 NM_022489 HPRD:08648 INF2 C14orf151|C14orf173|CMTDIE|FSGS5|pp9484 inverted formin, FH2 and WH2 domain containing protein-coding 13-PTNLD9-TUMOR_peak_19449 chr16 57677353 57677640 + 6.37790 NA intron (NM_001290142, intron 2 of 13) intron (NM_001290142, intron 2 of 13) 4289 NM_001290144 9289 Hs.513633 NM_005682 HPRD:06824 GPR56 BFPP|BPPR|TM7LN4|TM7XN1 G protein-coupled receptor 56 protein-coding 13-PTNLD9-TUMOR_peak_7379 chr10 52464350 52464550 + 6.37790 NA Intergenic Intergenic -35238 NM_001079516 653308 Hs.710005 NM_001079516 ENSG00000204147 ASAH2B ASAH2C|ASAH2L|bA449O16.3 N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2B protein-coding 13-PTNLD9-TUMOR_peak_48017 chr7 75620349 75620587 + 6.37501 NA intron (NM_031925, intron 3 of 11) intron (NM_031925, intron 3 of 11) 3524 NM_031925 83862 Hs.488835 NM_031925 TMEM120A NET29|TMPIT transmembrane protein 120A protein-coding 13-PTNLD9-TUMOR_peak_49496 chr7 143189203 143189312 + 6.37501 NA intron (NR_033897, intron 2 of 4) L2b|LINE|L2 14291 NM_176883 259287 Hs.650648 NM_176883 HPRD:18151 TAS2R41 T2R41|T2R59 taste receptor, type 2, member 41 protein-coding 13-PTNLD9-TUMOR_peak_18365 chr16 4425067 4425266 + 6.37005 NA intron (NM_138440, intron 1 of 1) intron (NM_138440, intron 1 of 1) 3317 NM_138440 114990 Hs.372579 NM_138440 HPRD:10587 VASN SLITL2 vasorin protein-coding 13-PTNLD9-TUMOR_peak_14024 chr12 120666274 120666368 + 6.36825 NA intron (NM_001243756, intron 1 of 10) intron (NM_001243756, intron 1 of 10) 21643 NM_025157 5829 Hs.446336 NM_002859 ENSG00000089159 PXN - paxillin protein-coding 13-PTNLD9-TUMOR_peak_41078 chr5 65622261 65622374 + 6.36792 NA Intergenic Intergenic 181654 NM_139168 140890 Hs.49367 NM_139168 HPRD:18043 SREK1 SFRS12|SRrp508|SRrp86 splicing regulatory glutamine/lysine-rich protein 1 protein-coding 13-PTNLD9-TUMOR_peak_13196 chr12 66276016 66276160 + 6.36792 NA promoter-TSS (NM_001292024) promoter-TSS (NM_001292024) -141 NM_001292024 100129940 Hs.685856 NM_001292023 ENSG00000197301 LOC100129940 - uncharacterized LOC100129940 protein-coding 13-PTNLD9-TUMOR_peak_28613 chr2 139509916 139510080 + 6.36792 NA intron (NM_007226, intron 1 of 1) intron (NM_007226, intron 1 of 1) 27813 NM_007226 11249 Hs.435019 NM_007226 NXPH2 NPH2 neurexophilin 2 protein-coding 13-PTNLD9-TUMOR_peak_19569 chr16 67226016 67226112 + 6.36792 NA promoter-TSS (NM_001950) promoter-TSS (NM_001950) -4 NM_001950 1874 Hs.108371 NM_001950 HPRD:02806 E2F4 E2F-4 E2F transcription factor 4, p107/p130-binding protein-coding 13-PTNLD9-TUMOR_peak_5689 chr1 228141734 228141835 + 6.36260 NA Intergenic Intergenic -6108 NM_003395 7483 Hs.149504 NM_003395 WNT9A WNT14 wingless-type MMTV integration site family, member 9A protein-coding 13-PTNLD9-TUMOR_peak_12840 chr12 52867685 52867814 + 6.36260 NA promoter-TSS (NM_173086) promoter-TSS (NM_173086) -180 NM_173086 286887 Hs.709234 NM_173086 HPRD:17247 KRT6C K6E|KRT6E|PPKNEFD keratin 6C protein-coding 13-PTNLD9-TUMOR_peak_26895 chr2 48778841 48778935 + 6.36260 NA intron (NM_001198595, intron 2 of 4) intron (NM_001198595, intron 2 of 4) -17271 NM_172311 286749 Hs.732016 NM_172311 HPRD:18496 STON1-GTF2A1L SALF STON1-GTF2A1L readthrough protein-coding 13-PTNLD9-TUMOR_peak_19434 chr16 57373587 57373905 + 6.36260 NA Intergenic AluJb|SINE|Alu -18949 NM_002990 6367 Hs.534347 NM_002990 HPRD:04263 CCL22 ABCD-1|DC/B-CK|MDC|SCYA22|STCP-1 chemokine (C-C motif) ligand 22 protein-coding 13-PTNLD9-TUMOR_peak_9061 chr11 11425569 11425776 + 6.36260 NA intron (NM_198516, intron 3 of 10) intron (NM_198516, intron 3 of 10) -50768 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2, alpha 3 polypeptide protein-coding 13-PTNLD9-TUMOR_peak_39842 chr4 170080806 170081059 + 6.36260 NA intron (NM_020870, intron 2 of 11) intron (NM_020870, intron 2 of 11) 111317 NM_020870 57630 Hs.301804 NM_020870 HPRD:15335 SH3RF1 POSH|RNF142|SH3MD2 SH3 domain containing ring finger 1 protein-coding 13-PTNLD9-TUMOR_peak_26673 chr2 40714935 40715029 + 6.36260 NA intron (NM_001112802, intron 1 of 7) intron (NM_001112802, intron 1 of 7) 24593 NM_001112802 6546 Hs.31961 NM_021097 HPRD:01659 SLC8A1 NCX1 solute carrier family 8 (sodium/calcium exchanger), member 1 protein-coding 13-PTNLD9-TUMOR_peak_52665 chr9 4353442 4353694 + 6.36260 NA Intergenic Intergenic -53533 NM_001042413 169792 Hs.162125 NM_152629 HPRD:13582 GLIS3 ZNF515 GLIS family zinc finger 3 protein-coding 13-PTNLD9-TUMOR_peak_21751 chr17 61981288 61981382 + 6.36260 NA Intergenic Intergenic 7283 NM_022580 1444 Hs.655225 NM_001318 HPRD:04623 CSHL1 CS-5|CSHP1|CSL|hCS-L chorionic somatomammotropin hormone-like 1 protein-coding 13-PTNLD9-TUMOR_peak_52921 chr9 22211816 22211936 + 6.36260 NA Intergenic Intergenic -202564 NM_078487 1030 Hs.72901 NM_004936 HPRD:02696 CDKN2B CDK4I|INK4B|MTS2|P15|TP15|p15INK4b cyclin-dependent kinase inhibitor 2B (p15, inhibits CDK4) protein-coding 13-PTNLD9-TUMOR_peak_21127 chr17 41496342 41496472 + 6.36260 NA Intergenic Intergenic 20054 NM_001661 379 Hs.183153 NM_001661 HPRD:02842 ARL4D ARF4L|ARL6 ADP-ribosylation factor-like 4D protein-coding 13-PTNLD9-TUMOR_peak_36886 chr3 180397201 180397413 + 6.36260 NA promoter-TSS (NM_181426) promoter-TSS (NM_181426) -24 NM_181426 339829 Hs.712820 NM_181426 ENSG00000145075 CCDC39 CILD14|FAP59 coiled-coil domain containing 39 protein-coding 13-PTNLD9-TUMOR_peak_6103 chr1 243962101 243962336 + 6.36260 NA intron (NM_181690, intron 1 of 13) intron (NM_181690, intron 1 of 13) 44366 NM_181690 10000 Hs.498292 NM_005465 HPRD:06441 AKT3 MPPH|PKB-GAMMA|PKBG|PRKBG|RAC-PK-gamma|RAC-gamma|STK-2 v-akt murine thymoma viral oncogene homolog 3 protein-coding 13-PTNLD9-TUMOR_peak_13068 chr12 58704665 58704915 + 6.36260 NA Intergenic Intergenic 369345 NM_033276 91419 Hs.61188 NM_033276 HPRD:17256 XRCC6BP1 KUB3 XRCC6 binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_7494 chr10 63772056 63772353 + 6.36260 NA intron (NM_032199, intron 4 of 9) AluJb|SINE|Alu 36143 NR_049858 100847083 NR_049858 MIR548AV - microRNA 548av ncRNA 13-PTNLD9-TUMOR_peak_12439 chr12 31522989 31523225 + 6.36260 NA Intergenic MIR3|SINE|MIR -43948 NM_001135812 58516 Hs.505154 NM_021238 HPRD:16588 FAM60A C12orf14|TERA family with sequence similarity 60, member A protein-coding 13-PTNLD9-TUMOR_peak_22609 chr18 11752707 11752825 + 6.36260 NA intron (NM_001261443, intron 2 of 12) intron (NM_001261443, intron 2 of 12) 1295 NM_001142339 2774 Hs.136295 NM_002071 HPRD:00758 GNAL DYT25 guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type protein-coding 13-PTNLD9-TUMOR_peak_40442 chr5 17025115 17025234 + 6.36260 NA Intergenic Intergenic -88789 NM_012334 4651 Hs.481720 NM_012334 HPRD:03283 MYO10 - myosin X protein-coding 13-PTNLD9-TUMOR_peak_26151 chr2 12154256 12154657 + 6.36260 NA intron (NR_110196, intron 2 of 5) intron (NR_110196, intron 2 of 5) 7214 NR_110196 100506457 Hs.197824 NR_110196 ENSG00000224184 LOC100506457 - uncharacterized LOC100506457 ncRNA 13-PTNLD9-TUMOR_peak_20958 chr17 37009706 37009810 + 6.36260 NA promoter-TSS (NR_002576) promoter-TSS (NR_002576) 295 NM_000978 9349 Hs.406300 NM_000978 RPL23 L23|rpL17 ribosomal protein L23 protein-coding 13-PTNLD9-TUMOR_peak_51208 chr8 82644641 82644805 + 6.36260 NA promoter-TSS (NM_152284) promoter-TSS (NM_152284) 35 NM_152284 92421 Hs.183861 NM_152284 HPRD:18135 CHMP4C SNF7-3|Shax3|VPS32C charged multivesicular body protein 4C protein-coding 13-PTNLD9-TUMOR_peak_51109 chr8 69615817 69616033 + 6.36260 NA intron (NM_052958, intron 8 of 13) LTR16E2|LTR|ERVL -372199 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 LOC286189 - uncharacterized LOC286189 ncRNA 13-PTNLD9-TUMOR_peak_12596 chr12 42868325 42868444 + 6.36260 NA intron (NM_153026, intron 1 of 7) intron (NM_153026, intron 1 of 7) 9032 NM_001144881 144165 Hs.524348 NM_153026 HPRD:16341 PRICKLE1 EPM1B|RILP prickle homolog 1 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_47793 chr7 68442950 68443045 + 6.36260 NA Intergenic MIR|SINE|MIR 619484 NR_108105 100507468 Hs.362492 NR_108105 LOC100507468 - uncharacterized LOC100507468 ncRNA 13-PTNLD9-TUMOR_peak_6031 chr1 238226926 238227066 + 6.36260 NA Intergenic Intergenic -172774 NM_021186 57829 Hs.136241 NM_021186 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 13-PTNLD9-TUMOR_peak_22117 chr17 75538958 75539076 + 6.36260 NA Intergenic Intergenic -4006 NR_040050 100507351 Hs.514518 NR_040050 LOC100507351 - uncharacterized LOC100507351 ncRNA 13-PTNLD9-TUMOR_peak_36496 chr3 156436761 156437185 + 6.36260 NA Intergenic Intergenic 42520 NM_001184718 25976 Hs.744050 NM_015508 HPRD:18192 TIPARP ARTD14|PARP7|pART14 TCDD-inducible poly(ADP-ribose) polymerase protein-coding 13-PTNLD9-TUMOR_peak_55530 chrX 11468660 11468837 + 6.36260 NA intron (NR_109776, intron 1 of 14) intron (NR_109776, intron 1 of 14) -22843 NM_001287242 395 Hs.435291 NM_001174 HPRD:02124 ARHGAP6 RHOGAP6|RHOGAPX-1 Rho GTPase activating protein 6 protein-coding 13-PTNLD9-TUMOR_peak_43147 chr5 175539943 175540159 + 6.35929 NA intron (NM_001265615, intron 17 of 19) intron (NM_001265615, intron 17 of 19) -6501 NR_038402 100507387 Hs.368516 NR_038402 ENSG00000182230 LOC100507387 - uncharacterized LOC100507387 ncRNA 13-PTNLD9-TUMOR_peak_41505 chr5 90575819 90576059 + 6.35894 NA Intergenic Intergenic 34280 NR_103548 100505994 Hs.628363 NR_103548 ENSG00000248323 LUCAT1 SCAL1 lung cancer associated transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_1201 chr1 38325888 38325983 + 6.35488 NA promoter-TSS (NM_005955) promoter-TSS (NM_005955) -643 NM_005955 4520 Hs.471991 NM_005955 HPRD:02546 MTF1 MTF-1|ZRF metal-regulatory transcription factor 1 protein-coding 13-PTNLD9-TUMOR_peak_22251 chr17 79071311 79071415 + 6.35488 NA intron (NM_006340, intron 6 of 14) intron (NM_006340, intron 6 of 14) 27810 NR_030394 724027 NR_030394 MIR657 MIRN657|hsa-mir-657 microRNA 657 ncRNA 13-PTNLD9-TUMOR_peak_33846 chr3 13527128 13527272 + 6.35488 NA intron (NM_001136041, intron 3 of 9) AluJo|SINE|Alu 5356 NM_001136041 79885 Hs.744132 NM_024827 HPRD:09146 HDAC11 HD11 histone deacetylase 11 protein-coding 13-PTNLD9-TUMOR_peak_10359 chr11 67235656 67235772 + 6.35488 NA intron (NR_073411, intron 1 of 6) intron (NR_073411, intron 1 of 6) 1034 NR_073409 80194 Hs.288761 NM_025124 HPRD:08642 TMEM134 - transmembrane protein 134 protein-coding 13-PTNLD9-TUMOR_peak_25636 chr19 54672345 54672450 + 6.35409 NA exon (NM_001145303, exon 4 of 15) exon (NM_001145303, exon 4 of 15) 4547 NM_001145303 147798 Hs.355126 NM_144686 HPRD:15515 TMC4 - transmembrane channel-like 4 protein-coding 13-PTNLD9-TUMOR_peak_45833 chr6 107140118 107140212 + 6.35375 NA Intergenic Intergenic 62724 NM_018292 55278 Hs.406917 NM_018292 HPRD:15199 QRSL1 GatA glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1 protein-coding 13-PTNLD9-TUMOR_peak_33593 chr3 4910117 4910243 + 6.35375 NA Intergenic CpG -29730 NR_037903 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_36798 chr3 176931693 176931853 + 6.35375 NA Intergenic Intergenic -16725 NM_024665 79718 Hs.715026 NM_024665 HPRD:15476 TBL1XR1 C21|DC42|IRA1|TBLR1 transducin (beta)-like 1 X-linked receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_53312 chr9 43320914 43321053 + 6.35375 NA Intergenic Intergenic -175499 NR_027472 642929 Hs.584288 NR_027472 LOC642929 - general transcription factor II, i pseudogene pseudo 13-PTNLD9-TUMOR_peak_5888 chr1 234445396 234445552 + 6.35375 NA intron (NM_001300845, intron 3 of 6) intron (NM_001300845, intron 3 of 6) 3261 NR_039818 100616380 NR_039818 MIR4671 - microRNA 4671 ncRNA 13-PTNLD9-TUMOR_peak_9700 chr11 46697116 46697268 + 6.35375 NA 3' UTR (NM_001205119, exon 18 of 18) 3' UTR (NM_001205119, exon 18 of 18) 25023 NM_004308 392 Hs.138860 NM_004308 HPRD:04108 ARHGAP1 CDC42GAP|RHOGAP|RHOGAP1|p50rhoGAP Rho GTPase activating protein 1 protein-coding 13-PTNLD9-TUMOR_peak_20264 chr17 2715596 2715752 + 6.35375 NA intron (NM_015085, intron 2 of 24) intron (NM_015085, intron 2 of 24) 15942 NM_001100398 23108 Hs.499659 NM_015085 HPRD:17028 RAP1GAP2 GARNL4|RAP1GA3 RAP1 GTPase activating protein 2 protein-coding 13-PTNLD9-TUMOR_peak_50338 chr8 23201345 23201464 + 6.35375 NA intron (NM_002318, intron 3 of 13) intron (NM_002318, intron 3 of 13) 7683 NR_038323 100507156 Hs.661130 NR_038323 ENSG00000253837 LOC100507156 - uncharacterized LOC100507156 ncRNA 13-PTNLD9-TUMOR_peak_25967 chr2 3374308 3374420 + 6.35375 NA intron (NM_003310, intron 1 of 8) L1PA3|LINE|L1 7289 NM_003310 7260 Hs.502770 NM_003310 HPRD:10287 TSSC1 - tumor suppressing subtransferable candidate 1 protein-coding 13-PTNLD9-TUMOR_peak_18886 chr16 28634639 28634763 + 6.35375 NA 5' UTR (NM_177536, exon 1 of 6) 5' UTR (NM_177536, exon 1 of 6) 206 NM_177536 6817 Hs.567342 NM_001055 HPRD:01372 SULT1A1 HAST1/HAST2|P-PST|PST|ST1A1|ST1A3|STP|STP1|TSPST1 sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1 protein-coding 13-PTNLD9-TUMOR_peak_5274 chr1 206593259 206593401 + 6.35375 NA intron (NM_001170637, intron 9 of 19) intron (NM_001170637, intron 9 of 19) 35963 NR_120535 100996712 Hs.497575 NM_001271887 SRGAP2D - SLIT-ROBO Rho GTPase activating protein 2D (pseudogene) pseudo 13-PTNLD9-TUMOR_peak_16142 chr14 69503590 69503697 + 6.35375 NA Intergenic L2a|LINE|L2 57244 NR_073422 161159 Hs.603341 NR_073422 ENSG00000259062 ACTN1-AS1 C14orf84 ACTN1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_45394 chr6 57087072 57087195 + 6.35375 NA promoter-TSS (NM_001278667) promoter-TSS (NM_001278667) -21 NM_016277 51715 Hs.555016 NM_016277 RAB23 HSPC137 RAB23, member RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_23211 chr18 49676383 49676732 + 6.34817 NA Intergenic LTR16A|LTR|ERVL -189985 NM_005215 1630 Hs.162025 NM_005215 DCC CRC18|CRCR1|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 13-PTNLD9-TUMOR_peak_15091 chr13 109926610 109926765 + 6.34817 NA Intergenic Intergenic -107036 NR_047700 100885782 Hs.655942 NR_047700 ENSG00000236242 MYO16-AS1 - MYO16 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_47753 chr7 66056890 66057108 + 6.34817 NA intron (NR_111977, intron 1 of 5) CpG 395 NR_111972 493754 Hs.732409 NR_002933 LOC493754 - RAB guanine nucleotide exchange factor (GEF) 1 pseudogene pseudo 13-PTNLD9-TUMOR_peak_54238 chr9 102976180 102976274 + 6.34817 NA intron (NM_014425, intron 3 of 16) LTR40c|LTR|ERVL 114725 NR_051962 27130 Hs.558477 NM_014425 HPRD:08356 INVS INV|NPH2|NPHP2 inversin protein-coding 13-PTNLD9-TUMOR_peak_26739 chr2 43822779 43822993 + 6.34817 NA 5' UTR (NM_001271643, exon 1 of 18) 5' UTR (NM_001271643, exon 1 of 18) 227 NM_001083953 63892 Hs.369592 NM_022065 HPRD:18177 THADA GITA thyroid adenoma associated protein-coding 13-PTNLD9-TUMOR_peak_45113 chr6 43894498 43894787 + 6.34817 NA intron (NR_024478, intron 1 of 1) intron (NR_024478, intron 1 of 1) 35877 NR_024478 100132354 Hs.376232 NR_024478 LINC01512 - long intergenic non-protein coding RNA 1512 ncRNA 13-PTNLD9-TUMOR_peak_29093 chr2 173292192 173292308 + 6.34817 NA promoter-TSS (NM_000210) promoter-TSS (NM_000210) -64 NM_000210 3655 Hs.133397 NM_000210 HPRD:00945 ITGA6 CD49f|ITGA6B|VLA-6 integrin, alpha 6 protein-coding 13-PTNLD9-TUMOR_peak_10586 chr11 73025646 73026053 + 6.34817 NA intron (NM_014786, intron 1 of 20) intron (NM_014786, intron 1 of 20) 6186 NM_014786 9828 Hs.533719 NM_014786 HPRD:10658 ARHGEF17 P164RHOGEF|TEM4|p164-RhoGEF Rho guanine nucleotide exchange factor (GEF) 17 protein-coding 13-PTNLD9-TUMOR_peak_5202 chr1 205343972 205344119 + 6.34817 NA intron (NR_038425, intron 1 of 3) intron (NR_038425, intron 1 of 3) 1665 NR_038425 284576 Hs.585440 NR_038425 ENSG00000226235 LEMD1-AS1 - LEMD1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_34593 chr3 50310400 50310513 + 6.34127 NA promoter-TSS (NR_106932) promoter-TSS (NR_106932) -94 NM_001290062 7869 Hs.82222 NM_004636 SEMA3B LUCA-1|SEMA5|SEMAA|SemA|semaV sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B protein-coding 13-PTNLD9-TUMOR_peak_35393 chr3 112497285 112497429 + 6.34127 NA Intergenic Intergenic -29191 NR_110017 101929694 Hs.385630 NR_110017 ENSG00000240893 LOC101929694 - uncharacterized LOC101929694 ncRNA 13-PTNLD9-TUMOR_peak_25657 chr19 55477537 55477833 + 6.34127 NA promoter-TSS (NM_001174083) promoter-TSS (NM_001174083) -26 NM_001174083 55655 Hs.369279 NM_017852 HPRD:14805 NLRP2 CLR19.9|NALP2|NBS1|PAN1|PYPAF2 NLR family, pyrin domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_21445 chr17 48231395 48231653 + 6.34127 NA Intergenic Intergenic -3646 NM_032595 84687 Hs.514323 NM_032595 HPRD:04506 PPP1R9B PPP1R6|PPP1R9|SPINO|Spn protein phosphatase 1, regulatory subunit 9B protein-coding 13-PTNLD9-TUMOR_peak_34017 chr3 19188708 19188868 + 6.34127 NA Intergenic Intergenic -1229 NM_144633 131096 Hs.475656 NM_144633 HPRD:10006 KCNH8 ELK|ELK1|Kv12.1|elk3 potassium voltage-gated channel, subfamily H (eag-related), member 8 protein-coding 13-PTNLD9-TUMOR_peak_8816 chr11 2414183 2414362 + 6.33689 NA intron (NM_001297649, intron 2 of 7) intron (NM_001297649, intron 2 of 7) -7446 NM_001297661 10078 Hs.523424 NM_005706 HPRD:10357 TSSC4 - tumor suppressing subtransferable candidate 4 protein-coding 13-PTNLD9-TUMOR_peak_39666 chr4 153701383 153701500 + 6.33689 NA promoter-TSS (NM_145720) promoter-TSS (NM_145720) 352 NM_014447 27236 Hs.416089 NM_014447 HPRD:09331 ARFIP1 HSU52521 ADP-ribosylation factor interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_26820 chr2 46771327 46771436 + 6.33046 NA intron (NM_012249, intron 2 of 4) intron (NM_012249, intron 2 of 4) 1514 NM_012249 23433 Hs.709193 NM_012249 RHOQ ARHQ|HEL-S-42|RASL7A|TC10|TC10A ras homolog family member Q protein-coding 13-PTNLD9-TUMOR_peak_8362 chr10 115145045 115145142 + 6.32454 NA Intergenic Intergenic -165497 NM_001177660 3026 Hs.422542 NM_004132 HPRD:04890 HABP2 FSAP|HABP|HGFAL|PHBP hyaluronan binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_22529 chr18 8609335 8609458 + 6.32454 NA promoter-TSS (NM_001025300) promoter-TSS (NM_001025300) -47 NM_001025300 201475 Hs.270074 NM_001025300 ENSG00000206418 RAB12 - RAB12, member RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_2929 chr1 114455655 114455850 + 6.32454 NA 3' UTR (NM_022836, exon 4 of 4) 3' UTR (NM_022836, exon 4 of 4) 7837 NM_022836 64858 Hs.591412 NM_022836 HPRD:16785 DCLRE1B APOLLO|SNM1B|SNMIB DNA cross-link repair 1B protein-coding 13-PTNLD9-TUMOR_peak_2184 chr1 70975880 70976020 + 6.32454 NA Intergenic Intergenic 99049 NM_001902 1491 Hs.19904 NM_001902 HPRD:09633 CTH - cystathionine gamma-lyase protein-coding 13-PTNLD9-TUMOR_peak_39786 chr4 160860337 160860431 + 6.32454 NA Intergenic SVA_D|Other|Other 671386 NM_014247 9693 Hs.744884 NM_014247 ENSG00000109756 RAPGEF2 CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|Rap-GEP|nRap GEP Rap guanine nucleotide exchange factor (GEF) 2 protein-coding 13-PTNLD9-TUMOR_peak_52206 chr8 135333641 135333758 + 6.32454 NA Intergenic Intergenic -276615 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_23044 chr18 43622628 43622911 + 6.32454 NA intron (NM_024430, intron 1 of 14) intron (NM_024430, intron 1 of 14) 29481 NM_024430 9050 Hs.567384 NM_024430 HPRD:06687 PSTPIP2 MAYP proline-serine-threonine phosphatase interacting protein 2 protein-coding 13-PTNLD9-TUMOR_peak_33079 chr22 30421260 30421388 + 6.32454 NA intron (NM_153050, intron 19 of 19) intron (NM_153050, intron 19 of 19) 18286 NR_106876 102466742 NR_106876 MIR6818 hsa-mir-6818 microRNA 6818 ncRNA 13-PTNLD9-TUMOR_peak_33652 chr3 8681183 8681381 + 6.32454 NA intron (NM_001256749, intron 1 of 11) intron (NM_001256749, intron 1 of 11) 5202 NR_046358 51066 Hs.736935 NM_015931 HPRD:11267 SSUH2 C3orf32|SSU-2|fls485 ssu-2 homolog (C. elegans) protein-coding 13-PTNLD9-TUMOR_peak_33260 chr22 38714345 38714573 + 6.32454 NA promoter-TSS (NM_001894) promoter-TSS (NM_001894) -370 NM_001894 1454 Hs.474833 NM_001894 HPRD:02919 CSNK1E CKIepsilon|HCKIE casein kinase 1, epsilon protein-coding 13-PTNLD9-TUMOR_peak_37154 chr3 188599801 188599984 + 6.32454 NA 3' UTR (NM_001167672, exon 10 of 10) 3' UTR (NM_001167672, exon 10 of 10) 65536 NR_046873 100874043 Hs.616287 NR_046873 TPRG1-AS1 - TPRG1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_16902 chr15 30357473 30357649 + 6.32454 NA Intergenic Intergenic -17597 NM_001282472 653073 Hs.574257 NM_001282472 GOLGA8J - golgin A8 family, member J protein-coding 13-PTNLD9-TUMOR_peak_30923 chr20 35242518 35242707 + 6.32454 NA intron (NM_032214, intron 7 of 7) intron (NM_032214, intron 7 of 7) 8475 NR_026562 55969 Hs.584985 NM_018840 HPRD:12761 C20orf24 RIP5 chromosome 20 open reading frame 24 protein-coding 13-PTNLD9-TUMOR_peak_47506 chr7 53383763 53384033 + 6.32454 NA Intergenic Intergenic 280549 NM_182595 285877 Hs.381970 NM_182595 HPRD:13212 POM121L12 - POM121 transmembrane nucleoporin-like 12 protein-coding 13-PTNLD9-TUMOR_peak_38805 chr4 86953877 86954154 + 6.32454 NA intron (NM_138982, intron 11 of 13) intron (NM_138982, intron 11 of 13) 74791 NM_138981 5602 Hs.13438 NM_002753 HPRD:04207 MAPK10 JNK3|JNK3A|PRKM10|SAPK1b|p493F12|p54bSAPK mitogen-activated protein kinase 10 protein-coding 13-PTNLD9-TUMOR_peak_50258 chr8 21975437 21975564 + 6.32454 NA intron (NM_005144, intron 16 of 18) intron (NM_005144, intron 16 of 18) -8568 NM_024815 79873 Hs.527101 NM_024815 NUDT18 MTH3 nudix (nucleoside diphosphate linked moiety X)-type motif 18 protein-coding 13-PTNLD9-TUMOR_peak_39157 chr4 119274135 119274355 + 6.32454 NA promoter-TSS (NM_003619) promoter-TSS (NM_003619) -323 NM_003619 8492 Hs.445857 NM_003619 HPRD:05989 PRSS12 BSSP-3|BSSP3|MRT1 protease, serine, 12 (neurotrypsin, motopsin) protein-coding 13-PTNLD9-TUMOR_peak_26144 chr2 11879267 11879364 + 6.32454 NA intron (NM_001261429, intron 1 of 9) MLT1F1|LTR|ERVL-MaLR -7407 NM_145693 23175 Hs.467740 NM_145693 HPRD:09271 LPIN1 PAP1 lipin 1 protein-coding 13-PTNLD9-TUMOR_peak_22683 chr18 14470391 14470493 + 6.32454 NA Intergenic Intergenic 28263 NR_024076 440224 Hs.721675 NR_024076 ENSG00000265766 CXADRP3 - coxsackie virus and adenovirus receptor pseudogene 3 pseudo 13-PTNLD9-TUMOR_peak_48188 chr7 83742211 83742349 + 6.32454 NA intron (NM_006080, intron 3 of 16) intron (NM_006080, intron 3 of 16) 81937 NM_006080 10371 Hs.252451 NM_006080 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A protein-coding 13-PTNLD9-TUMOR_peak_48684 chr7 103086563 103086739 + 6.32454 NA promoter-TSS (NM_206885) promoter-TSS (NM_206885) -27 NM_206885 375611 Hs.585146 NM_198999 HPRD:09224 SLC26A5 DFNB61|PRES solute carrier family 26 (anion exchanger), member 5 protein-coding 13-PTNLD9-TUMOR_peak_45585 chr6 81250985 81251145 + 6.32454 NA Intergenic Intergenic 434721 NM_183050 594 Hs.654441 NM_000056 HPRD:02011 BCKDHB E1B|dJ279A18.1 branched chain keto acid dehydrogenase E1, beta polypeptide protein-coding 13-PTNLD9-TUMOR_peak_47940 chr7 73831943 73832042 + 6.32454 NA Intergenic Intergenic -36128 NM_005685 9569 Hs.647056 NM_005685 HPRD:08379 GTF2IRD1 BEN|CREAM1|GTF3|MUSTRD1|RBAP2|WBS|WBSCR11|WBSCR12|hMusTRD1alpha1 GTF2I repeat domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_23134 chr18 46423257 46423428 + 6.32454 NA Intergenic Intergenic 45835 NM_001190823 4092 Hs.465087 NM_005904 HPRD:04241 SMAD7 CRCS3|MADH7|MADH8 SMAD family member 7 protein-coding 13-PTNLD9-TUMOR_peak_48626 chr7 101959144 101959415 + 6.32454 NA intron (NM_020979, intron 5 of 6) intron (NM_020979, intron 5 of 6) 22910 NR_036245 100422858 NR_036245 MIR4285 - microRNA 4285 ncRNA 13-PTNLD9-TUMOR_peak_53721 chr9 80816164 80816276 + 6.32454 NA Intergenic L1PA7|LINE|L1 -34771 NM_001098802 84131 Hs.374421 NM_032171 ENSG00000148019 CEP78 C9orf81|IP63 centrosomal protein 78kDa protein-coding 13-PTNLD9-TUMOR_peak_25261 chr19 48216514 48216617 + 6.32454 NA promoter-TSS (NM_014601) promoter-TSS (NM_014601) -36 NM_014601 30846 Hs.744963 NM_014601 HPRD:10434 EHD2 PAST2 EH-domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_24818 chr19 37068433 37068529 + 6.32024 NA non-coding (NR_110706, exon 3 of 3) non-coding (NR_110706, exon 3 of 3) -4284 NM_020951 57711 Hs.654960 NM_020951 HPRD:15821 ZNF529 - zinc finger protein 529 protein-coding 13-PTNLD9-TUMOR_peak_48905 chr7 123389096 123389206 + 6.32024 NA promoter-TSS (NM_003941) promoter-TSS (NM_003941) -26 NM_003941 8976 Hs.143728 NM_003941 HPRD:05448 WASL N-WASP|NWASP Wiskott-Aldrich syndrome-like protein-coding 13-PTNLD9-TUMOR_peak_35097 chr3 89609889 89609989 + 6.32024 NA Intergenic Intergenic 453265 NM_182644 2042 Hs.123642 NM_005233 HPRD:01555 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 13-PTNLD9-TUMOR_peak_19145 chr16 33760797 33760891 + 6.32024 NA Intergenic L1HS|LINE|L1 -197601 NR_046943 100873777 NR_046943 ENSG00000206787 RNU6-76P RNU6-76 RNA, U6 small nuclear 76, pseudogene snRNA 13-PTNLD9-TUMOR_peak_36264 chr3 143831041 143831147 + 6.32024 NA Intergenic Intergenic 138927 NM_001134470 205428 Hs.288954 NM_173552 HPRD:14559 C3orf58 DIA1|GoPro49|HASF chromosome 3 open reading frame 58 protein-coding 13-PTNLD9-TUMOR_peak_53335 chr9 44479845 44479984 + 6.32024 NA Intergenic Intergenic 95329 NR_121564 101927827 Hs.738704 NR_121564 ENSG00000229311 LOC101927827 - uncharacterized LOC101927827 ncRNA 13-PTNLD9-TUMOR_peak_1450 chr1 43722407 43722642 + 6.32024 NA Intergenic Intergenic -13141 NM_144626 128218 Hs.104476 NM_144626 HPRD:14457 TMEM125 - transmembrane protein 125 protein-coding 13-PTNLD9-TUMOR_peak_207 chr1 6614606 6614721 + 6.32024 NA promoter-TSS (NM_138697) promoter-TSS (NM_138697) -5 NM_024654 79707 Hs.59425 NM_024654 HPRD:08667 NOL9 Grc3|NET6 nucleolar protein 9 protein-coding 13-PTNLD9-TUMOR_peak_10975 chr11 95656955 95657325 + 6.32024 NA 5' UTR (NM_201278, exon 1 of 17) 5' UTR (NM_201278, exon 1 of 17) 231 NM_001243571 8898 Hs.181326 NM_016156 HPRD:04650 MTMR2 CMT4B|CMT4B1 myotubularin related protein 2 protein-coding 13-PTNLD9-TUMOR_peak_33136 chr22 32046432 32046532 + 6.32024 NA Intergenic AluSz6|SINE|Alu -19672 NM_014338 23761 Hs.420559 NM_014338 HPRD:17854 PISD DJ858B16|PSD|PSDC|PSSC|dJ858B16.2 phosphatidylserine decarboxylase protein-coding 13-PTNLD9-TUMOR_peak_514 chr1 16403498 16403638 + 6.32024 NA Intergenic Intergenic -3441 NM_182623 348487 Hs.126825 NM_182623 HPRD:08779 FAM131C C1orf117 family with sequence similarity 131, member C protein-coding 13-PTNLD9-TUMOR_peak_23055 chr18 43844265 43844480 + 6.32024 NA 3' UTR (NM_145055, exon 5 of 5) 3' UTR (NM_145055, exon 5 of 5) -69815 NM_152470 494470 Hs.501114 NM_152470 ENSG00000141622 RNF165 ARKL2|RNF111L2 ring finger protein 165 protein-coding 13-PTNLD9-TUMOR_peak_49050 chr7 129665923 129666035 + 6.32024 NA intron (NM_001282191, intron 6 of 8) intron (NM_001282191, intron 6 of 8) 25312 NM_001282190 51530 Hs.194157 NM_016478 ENSG00000091732 ZC3HC1 NIPA zinc finger, C3HC-type containing 1 protein-coding 13-PTNLD9-TUMOR_peak_8327 chr10 112158428 112158713 + 6.32024 NA Intergenic Intergenic -93863 NM_005871 10285 Hs.632093 NM_005871 SMNDC1 SMNR|SPF30|TDRD16C survival motor neuron domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_55188 chr9_gl000200_random 28017 28156 + 6.32024 NA NA Intergenic NA NA 13-PTNLD9-TUMOR_peak_40438 chr5 16953160 16953264 + 6.31861 NA Intergenic AluJr|SINE|Alu -16827 NM_012334 4651 Hs.481720 NM_012334 HPRD:03283 MYO10 - myosin X protein-coding 13-PTNLD9-TUMOR_peak_10115 chr11 63530200 63530323 + 6.31861 NA 3' UTR (NM_001144936, exon 5 of 5) 3' UTR (NM_001144936, exon 5 of 5) 5852 NM_001144936 65998 Hs.191073 NM_001144936 C11orf95 - chromosome 11 open reading frame 95 protein-coding 13-PTNLD9-TUMOR_peak_16248 chr14 74317796 74317924 + 6.31861 NA promoter-TSS (NM_001146155) promoter-TSS (NM_001146155) -674 NM_001146154 145482 Hs.632344 NM_152444 HPRD:09782 PTGR2 HEL-S-298|PGR2|ZADH1 prostaglandin reductase 2 protein-coding 13-PTNLD9-TUMOR_peak_48701 chr7 104524271 104524422 + 6.31861 NA intron (NM_199000, intron 2 of 2) intron (NM_199000, intron 2 of 2) 42746 NR_027374 723809 Hs.124316 NR_027374 LHFPL3-AS2 - LHFPL3 antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_636 chr1 22266162 22266304 + 6.31861 NA Intergenic Intergenic -2443 NM_005529 3339 Hs.562227 NM_005529 HPRD:00804 HSPG2 HSPG|PLC|PRCAN|SJA|SJS|SJS1 heparan sulfate proteoglycan 2 protein-coding 13-PTNLD9-TUMOR_peak_7272 chr10 48186319 48186481 + 6.31861 NA intron (NR_024495, intron 1 of 8).2 intron (NR_024495, intron 1 of 8).2 561 NR_024495 642826 Hs.463017 NR_024495 BMS1P6 BMS1LP2|BMS1LP6|BMS1P2|bA302K17.2 BMS1 pseudogene 6 pseudo 13-PTNLD9-TUMOR_peak_1240 chr1 39564129 39564456 + 6.31861 NA intron (NM_012090, intron 1 of 92) intron (NM_012090, intron 1 of 92) 14453 NM_012090 23499 Hs.472475 NM_012090 HPRD:09750 MACF1 ABP620|ACF7|MACF|OFC4 microtubule-actin crosslinking factor 1 protein-coding 13-PTNLD9-TUMOR_peak_7765 chr10 75666578 75666722 + 6.31861 NA Intergenic Intergenic -4212 NM_002658 5328 Hs.77274 NM_002658 HPRD:01883 PLAU ATF|BDPLT5|QPD|UPA|URK|u-PA plasminogen activator, urokinase protein-coding 13-PTNLD9-TUMOR_peak_15183 chr13 115046854 115046996 + 6.31861 NA promoter-TSS (NM_080687) promoter-TSS (NM_080687) -134 NM_080687 65110 Hs.533855 NM_023011 HPRD:09274 UPF3A HUPF3A|RENT3A|UPF3 UPF3 regulator of nonsense transcripts homolog A (yeast) protein-coding 13-PTNLD9-TUMOR_peak_16700 chr14 105948346 105948489 + 6.31647 NA Intergenic Intergenic 4834 NR_073085 1397 Hs.534309 NM_001312 HPRD:03113 CRIP2 CRIP|CRP2|ESP1 cysteine-rich protein 2 protein-coding 13-PTNLD9-TUMOR_peak_46610 chr7 15592 15714 + 6.31647 NA Intergenic Intergenic -134065 NR_108065 100507642 Hs.557780 NR_108064 LOC100507642 - uncharacterized LOC100507642 ncRNA 13-PTNLD9-TUMOR_peak_33246 chr22 38292238 38292423 + 6.31491 NA Intergenic Intergenic -9825 NM_033386 85377 Hs.517610 NM_033386 HPRD:11363 MICALL1 MICAL-L1|MIRAB13 MICAL-like 1 protein-coding 13-PTNLD9-TUMOR_peak_17519 chr15 68569972 68570352 + 6.31491 NA promoter-TSS (NM_015322) promoter-TSS (NM_015322) 21 NM_015322 10116 Hs.362733 NM_015322 FEM1B F1A-ALPHA|F1AA|FEM1-beta fem-1 homolog b (C. elegans) protein-coding 13-PTNLD9-TUMOR_peak_54328 chr9 109683736 109684092 + 6.31491 NA intron (NR_031752, intron 2 of 3) intron (NR_031752, intron 2 of 3) 58536 NM_021224 58499 Hs.370379 NM_021224 HPRD:10333 ZNF462 Zfp462 zinc finger protein 462 protein-coding 13-PTNLD9-TUMOR_peak_3705 chr1 153315652 153315788 + 6.31491 NA intron (NM_020393, intron 4 of 8) intron (NM_020393, intron 4 of 8) 5302 NM_020393 57115 Hs.58356 NM_020393 HPRD:16298 PGLYRP4 PGLYRPIbeta|PGRP-Ibeta|PGRPIB peptidoglycan recognition protein 4 protein-coding 13-PTNLD9-TUMOR_peak_190 chr1 6265376 6265479 + 6.31491 NA promoter-TSS (NM_207396) promoter-TSS (NM_207396) -762 NM_207396 388591 Hs.716549 NM_173795 HPRD:08119 RNF207 C1orf188 ring finger protein 207 protein-coding 13-PTNLD9-TUMOR_peak_10941 chr11 94277056 94277152 + 6.31491 NA promoter-TSS (NM_002033) promoter-TSS (NM_002033) 87 NM_002033 2526 Hs.390420 NM_002033 HPRD:00083 FUT4 CD15|ELFT|FCT3A|FUC-TIV|FUTIV|LeX|SSEA-1 fucosyltransferase 4 (alpha (1,3) fucosyltransferase, myeloid-specific) protein-coding 13-PTNLD9-TUMOR_peak_25415 chr19 50390716 50390863 + 6.31491 NA promoter-TSS (NR_039905) promoter-TSS (NR_039905) -643 NR_039905 100616314 NR_039905 MIR4750 - microRNA 4750 ncRNA 13-PTNLD9-TUMOR_peak_48998 chr7 128509670 128509771 + 6.31491 NA 3' UTR (NM_001195150, exon 2 of 2) 3' UTR (NM_001195150, exon 2 of 2) 3256 NM_001195150 100130705 Hs.641532 NM_001195150 LOC100130705 - uncharacterized LOC100130705 protein-coding 13-PTNLD9-TUMOR_peak_3594 chr1 151031873 151032246 + 6.31491 NA promoter-TSS (NM_006818) promoter-TSS (NM_006818) 66 NM_020239 56882 Hs.22065 NM_020239 HPRD:16694 CDC42SE1 SCIP1|SPEC1 CDC42 small effector 1 protein-coding 13-PTNLD9-TUMOR_peak_35309 chr3 110737681 110737775 + 6.31491 NA Intergenic L1PA2|LINE|L1 51078 NR_045114 100506555 Hs.535689 NR_045114 PVRL3-AS1 - PVRL3 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_44776 chr6 35453282 35453455 + 6.31491 NA intron (NM_003214, intron 2 of 12) intron (NM_003214, intron 2 of 12) 11493 NM_003214 7005 Hs.485205 NM_003214 HPRD:04411 TEAD3 DTEF-1|ETFR-1|TEAD-3|TEAD5|TEF-5|TEF5 TEA domain family member 3 protein-coding 13-PTNLD9-TUMOR_peak_54040 chr9 96902271 96902490 + 6.31491 NA Intergenic Intergenic -35859 NR_029476 406881 NR_029476 miRBase:MI0000060 MIRLET7A1 LET7A1|MIRNLET7A1|let-7a-1 microRNA let-7a-1 ncRNA 13-PTNLD9-TUMOR_peak_55086 chr9 140506375 140506533 + 6.30660 NA intron (NM_152285, intron 1 of 7) intron (NM_152285, intron 1 of 7) 6358 NM_152285 92714 Hs.12999 NM_152285 HPRD:12491 ARRDC1 - arrestin domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_36425 chr3 151987343 151987508 + 6.30123 NA promoter-TSS (NR_027038) promoter-TSS (NR_027038) -10 NR_027037 401093 Hs.725347 NR_027037 ENSG00000229619 MBNL1-AS1 - MBNL1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_20579 chr17 18161543 18161678 + 6.30123 NA intron (NM_001256265, intron 1 of 28) intron (NM_001256265, intron 1 of 28) 260 NM_001256264 2314 Hs.513984 NM_002018 HPRD:02647 FLII FLI|FLIL|Fli1 flightless I homolog (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_10136 chr11 64007944 64008169 + 6.30079 NA promoter-TSS (NM_001135208) promoter-TSS (NM_001135208) -357 NM_004470 2286 Hs.227729 NM_004470 HPRD:01742 FKBP2 FKBP-13|PPIase FK506 binding protein 2, 13kDa protein-coding 13-PTNLD9-TUMOR_peak_14138 chr12 122750492 122750629 + 6.29187 NA intron (NM_022916, intron 1 of 12) intron (NM_022916, intron 1 of 12) 508 NM_022916 65082 Hs.592009 NM_022916 HPRD:15651 VPS33A - vacuolar protein sorting 33 homolog A (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_44889 chr6 37775999 37776157 + 6.29187 NA Intergenic LTR16C|LTR|ERVL -11229 NM_021943 60685 Hs.36959 NM_021943 HPRD:12121 ZFAND3 TEX27 zinc finger, AN1-type domain 3 protein-coding 13-PTNLD9-TUMOR_peak_36107 chr3 138581512 138581606 + 6.29184 NA Intergenic Intergenic 81303 NR_121649 103344930 Hs.195033 NR_121649 LINC01391 - long intergenic non-protein coding RNA 1391 ncRNA 13-PTNLD9-TUMOR_peak_16755 chr15 21233483 21233591 + 6.29184 NA Intergenic Intergenic 87770 NR_040094 348120 Hs.116287 NR_040094 ENSG00000258710 LINC01193 CT60 long intergenic non-protein coding RNA 1193 ncRNA 13-PTNLD9-TUMOR_peak_49312 chr7 138619329 138619428 + 6.29184 NA intron (NM_001164665, intron 1 of 19) MIR3|SINE|MIR 46686 NM_020910 57670 Hs.605380 NM_020910 ENSG00000122778 KIAA1549 - KIAA1549 protein-coding 13-PTNLD9-TUMOR_peak_31371 chr20 48201383 48201497 + 6.28847 NA Intergenic Intergenic -16733 NM_000961 5740 Hs.302085 NM_000961 HPRD:09046 PTGIS CYP8|CYP8A1|PGIS|PTGI prostaglandin I2 (prostacyclin) synthase protein-coding 13-PTNLD9-TUMOR_peak_32724 chr22 19159092 19159222 + 6.28847 NA promoter-TSS (NR_103767) promoter-TSS (NR_103767) -62 NR_103767 100652736 Hs.572896 NR_103767 LINC01311 - long intergenic non-protein coding RNA 1311 ncRNA 13-PTNLD9-TUMOR_peak_47002 chr7 20447484 20447664 + 6.28847 NA intron (NM_002214, intron 12 of 13) intron (NM_002214, intron 12 of 13) -76189 NR_110119 101927811 Hs.285724 NR_110119 ENSG00000271133 LOC101927811 - uncharacterized LOC101927811 ncRNA 13-PTNLD9-TUMOR_peak_33015 chr22 26981235 26981367 + 6.28847 NA intron (NM_003595, intron 1 of 6) intron (NM_003595, intron 1 of 6) 4788 NM_003595 8459 Hs.632768 NM_003595 HPRD:07217 TPST2 TANGO13B tyrosylprotein sulfotransferase 2 protein-coding 13-PTNLD9-TUMOR_peak_22218 chr17 78078377 78078559 + 6.28847 NA exon (NM_000152, exon 2 of 20) exon (NM_000152, exon 2 of 20) 3113 NM_001079803 2548 Hs.1437 NM_000152 HPRD:06006 GAA LYAG glucosidase, alpha; acid protein-coding 13-PTNLD9-TUMOR_peak_45464 chr6 71378104 71378280 + 6.28847 NA promoter-TSS (NM_001281440) promoter-TSS (NM_001281440) -41 NM_001281440 60682 Hs.485717 NM_021940 HPRD:18072 SMAP1 SMAP-1 small ArfGAP 1 protein-coding 13-PTNLD9-TUMOR_peak_10003 chr11 61276719 61277030 + 6.28847 NA TTS (NR_039708) TTS (NR_039708) 602 NM_001145077 390205 Hs.441122 NM_001145077 ENSG00000204950 LRRC10B - leucine rich repeat containing 10B protein-coding 13-PTNLD9-TUMOR_peak_30632 chr20 24117355 24117487 + 6.28847 NA Intergenic Intergenic -62982 NR_040102 400839 Hs.651965 NR_040102 ENSG00000230133 FLJ33581 - uncharacterized LOC400839 ncRNA 13-PTNLD9-TUMOR_peak_11547 chr11 126081171 126081340 + 6.28780 NA promoter-TSS (NM_024556) promoter-TSS (NM_024556) 332 NM_032795 84881 Hs.150458 NM_032795 HPRD:07862 RPUSD4 - RNA pseudouridylate synthase domain containing 4 protein-coding 13-PTNLD9-TUMOR_peak_3799 chr1 154600191 154600530 + 6.28780 NA promoter-TSS (NM_001025107) promoter-TSS (NM_001025107) 96 NM_001025107 103 Hs.12341 NM_001111 HPRD:07528 ADAR ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136 adenosine deaminase, RNA-specific protein-coding 13-PTNLD9-TUMOR_peak_6596 chr10 17685844 17686292 + 6.28780 NA promoter-TSS (NR_037774) promoter-TSS (NR_037774) -56 NM_003473 8027 Hs.335391 NM_003473 HPRD:03542 STAM STAM-1|STAM1 signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 protein-coding 13-PTNLD9-TUMOR_peak_28675 chr2 148777774 148778073 + 6.28780 NA promoter-TSS (NM_018328) promoter-TSS (NM_018328) 383 NM_001190882 5000 Hs.558364 NM_002552 HPRD:09118 ORC4 ORC4L|ORC4P origin recognition complex, subunit 4 protein-coding 13-PTNLD9-TUMOR_peak_5452 chr1 221589115 221589217 + 6.28730 NA Intergenic Intergenic -79528 NR_024236 400804 Hs.722626 NR_024236 HPRD:17386 C1orf140 - uncharacterized LOC400804 ncRNA 13-PTNLD9-TUMOR_peak_2077 chr1 64982915 64983226 + 6.28730 NA intron (NM_001293274, intron 1 of 25) L2a|LINE|L2 11473 NM_001293274 57685 Hs.443891 NM_020925 HPRD:13874 CACHD1 - cache domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_8777 chr11 1224340 1224441 + 6.28730 NA Intergenic Intergenic -19905 NM_002458 727897 Hs.523395 NM_002458 ENSG00000117983 MUC5B MG1|MUC-5B|MUC5|MUC9 mucin 5B, oligomeric mucus/gel-forming protein-coding 13-PTNLD9-TUMOR_peak_43256 chr5 177889917 177890072 + 6.28730 NA intron (NM_173465, intron 2 of 28) intron (NM_173465, intron 2 of 28) 127562 NM_173465 91522 Hs.660026 NM_173465 HPRD:16733 COL23A1 - collagen, type XXIII, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_20448 chr17 8374079 8374202 + 6.28730 NA Intergenic Intergenic 34970 NM_030808 81565 Hs.372123 NM_030808 HPRD:06340 NDEL1 EOPA|MITAP1|NDE1L1|NDE2|NUDEL nudE neurodevelopment protein 1-like 1 protein-coding 13-PTNLD9-TUMOR_peak_22053 chr17 74248241 74248489 + 6.28730 NA Intergenic Intergenic -11975 NM_052916 114804 Hs.500643 NM_052916 HPRD:15259 RNF157 - ring finger protein 157 protein-coding 13-PTNLD9-TUMOR_peak_37281 chr3 193570180 193570312 + 6.28730 NA Intergenic Intergenic 141781 NR_027764 100128023 Hs.730112 NR_027764 DPPA2P3 - developmental pluripotency associated 2 pseudogene 3 pseudo 13-PTNLD9-TUMOR_peak_30351 chr20 5042055 5042168 + 6.28730 NA Intergenic MER5A1|DNA|hAT-Charlie -51172 NM_203327 9962 Hs.516866 NM_005116 HPRD:04811 SLC23A2 NBTL1|SLC23A1|SVCT2|YSPL2 solute carrier family 23 (ascorbic acid transporter), member 2 protein-coding 13-PTNLD9-TUMOR_peak_4503 chr1 176826978 176827094 + 6.28730 NA intron (NM_001286164, intron 22 of 22) intron (NM_001286164, intron 22 of 22) 171545 NR_030163 574441 NR_030163 MIR488 MIRN488|hsa-mir-488 microRNA 488 ncRNA 13-PTNLD9-TUMOR_peak_12059 chr12 8059078 8059274 + 6.28730 NA Intergenic AluSx4|SINE|Alu -15384 NM_001286237 144195 Hs.655169 NM_153449 HPRD:11573 SLC2A14 GLUT14|SLC2A3P3 solute carrier family 2 (facilitated glucose transporter), member 14 protein-coding 13-PTNLD9-TUMOR_peak_26864 chr2 47516109 47516256 + 6.28730 NA intron (NR_110207, intron 1 of 2) intron (NR_110207, intron 1 of 2) 56031 NR_110207 101927043 Hs.515976 NR_110207 ENSG00000234690 LOC101927043 - uncharacterized LOC101927043 ncRNA 13-PTNLD9-TUMOR_peak_27323 chr2 74942267 74942376 + 6.28730 NA Intergenic Intergenic 60966 NR_073398 10505 Hs.25887 NM_004263 SEMA4F M-SEMA|PRO2353|S4F|SEMAM|SEMAW|m-Sema-M sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4F protein-coding 13-PTNLD9-TUMOR_peak_34085 chr3 24187532 24187716 + 6.28730 NA intron (NM_001128176, intron 7 of 10) intron (NM_001128176, intron 7 of 10) -5191 NR_121667 101927854 Hs.570625 NR_121667 LOC101927854 - uncharacterized LOC101927854 ncRNA 13-PTNLD9-TUMOR_peak_35294 chr3 109115391 109115538 + 6.28730 NA Intergenic Intergenic -13373 NR_109842 401082 Hs.477089 NM_001145553 LINC01205 - long intergenic non-protein coding RNA 1205 ncRNA 13-PTNLD9-TUMOR_peak_787 chr1 27114212 27114849 + 6.28730 NA promoter-TSS (NM_017837) promoter-TSS (NM_017837) 76 NM_017837 55650 Hs.259605 NM_017837 HPRD:07912 PIGV GPI-MT-II|HPMRS1|PIG-V phosphatidylinositol glycan anchor biosynthesis, class V protein-coding 13-PTNLD9-TUMOR_peak_52581 chr9 297591 297745 + 6.28730 NA intron (NM_001193536, intron 3 of 46) intron (NM_001193536, intron 3 of 46) 24620 NM_001193536 81704 Hs.132599 NM_203447 HPRD:10920 DOCK8 HEL-205|MRD2|ZIR8 dedicator of cytokinesis 8 protein-coding 13-PTNLD9-TUMOR_peak_23850 chr19 8499160 8499486 + 6.28730 NA intron (NM_001005415, intron 4 of 4) intron (NM_001005415, intron 4 of 4) -10389 NM_001297418 4670 Hs.465808 NM_005968 HPRD:01188 HNRNPM CEAR|HNRNPM4|HNRPM|HNRPM4|HTGR1|NAGR1|hnRNP M heterogeneous nuclear ribonucleoprotein M protein-coding 13-PTNLD9-TUMOR_peak_48019 chr7 75639652 75639827 + 6.28730 NA intron (NM_016086, intron 5 of 8) intron (NM_016086, intron 5 of 8) -15747 NM_031925 83862 Hs.488835 NM_031925 TMEM120A NET29|TMPIT transmembrane protein 120A protein-coding 13-PTNLD9-TUMOR_peak_17448 chr15 65176299 65176405 + 6.28730 NA Intergenic Intergenic -27749 NM_182703 348094 Hs.207157 NM_182703 HPRD:14178 ANKDD1A - ankyrin repeat and death domain containing 1A protein-coding 13-PTNLD9-TUMOR_peak_17732 chr15 78499207 78499305 + 6.28730 NA intron (NM_015162, intron 2 of 13) intron (NM_015162, intron 2 of 13) 27793 NM_015162 23205 Hs.655760 NM_015162 ACSBG1 BG|BG1|BGM|GR-LACS|LPD acyl-CoA synthetase bubblegum family member 1 protein-coding 13-PTNLD9-TUMOR_peak_4292 chr1 167035995 167036115 + 6.28730 NA intron (NM_005814, intron 3 of 6) intron (NM_005814, intron 3 of 6) 23813 NM_005814 10223 Hs.651244 NM_005814 HPRD:03704 GPA33 A33 glycoprotein A33 (transmembrane) protein-coding 13-PTNLD9-TUMOR_peak_17428 chr15 64296959 64297090 + 6.28730 NA intron (NM_014326, intron 2 of 11) intron (NM_014326, intron 2 of 11) 41497 NM_014326 23604 Hs.237886 NM_014326 HPRD:09905 DAPK2 DRP-1|DRP1 death-associated protein kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_33263 chr22 38819137 38819270 + 6.28730 NA Intergenic Intergenic 20830 NM_004981 3761 Hs.32505 NM_004981 HPRD:02738 KCNJ4 HIR|HIRK2|HRK1|IRK-3|IRK3|Kir2.3 potassium inwardly-rectifying channel, subfamily J, member 4 protein-coding 13-PTNLD9-TUMOR_peak_19395 chr16 56333166 56333280 + 6.28730 NA intron (NM_138736, intron 3 of 7) intron (NM_138736, intron 3 of 7) 53791 NR_037499 100500891 NR_037499 MIR3935 - microRNA 3935 ncRNA 13-PTNLD9-TUMOR_peak_8978 chr11 8788762 8788858 + 6.28730 NA intron (NM_139157, intron 1 of 18) L3|LINE|CR1 -1515 NR_120590 102724784 Hs.613276 NR_120590 LOC102724784 - uncharacterized LOC102724784 ncRNA 13-PTNLD9-TUMOR_peak_6496 chr10 12395589 12395696 + 6.28730 NA intron (NM_020397, intron 1 of 9) intron (NM_020397, intron 1 of 9) 4059 NM_153498 57118 Hs.659517 NM_020397 HPRD:06409 CAMK1D CKLiK|CaM-K1|CaMKID calcium/calmodulin-dependent protein kinase ID protein-coding 13-PTNLD9-TUMOR_peak_46740 chr7 3300098 3300214 + 6.28730 NA Intergenic Intergenic -40924 NM_152744 221935 Hs.653013 NM_152744 HPRD:07388 SDK1 - sidekick cell adhesion molecule 1 protein-coding 13-PTNLD9-TUMOR_peak_36906 chr3 181883080 181883412 + 6.28730 NA Intergenic Intergenic 213094 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 13-PTNLD9-TUMOR_peak_28342 chr2 124759257 124759351 + 6.28730 NA Intergenic Intergenic -23560 NM_130773 129684 Hs.660653 NM_130773 HPRD:16732 CNTNAP5 caspr5 contactin associated protein-like 5 protein-coding 13-PTNLD9-TUMOR_peak_1860 chr1 55030124 55030245 + 6.28730 NA intron (NM_015547, intron 1 of 16) intron (NM_015547, intron 1 of 16) 16377 NM_147161 26027 Hs.745173 NM_015547 HPRD:07075 ACOT11 BFIT|STARD14|THEA|THEM1 acyl-CoA thioesterase 11 protein-coding 13-PTNLD9-TUMOR_peak_5178 chr1 204983214 204983319 + 6.28730 NA intron (NM_001005388, intron 29 of 29) intron (NM_001005388, intron 29 of 29) -29074 NM_005076 6900 Hs.519220 NM_005076 HPRD:01826 CNTN2 AXT|FAME5|TAG-1|TAX|TAX1 contactin 2 (axonal) protein-coding 13-PTNLD9-TUMOR_peak_43691 chr6 7807095 7807191 + 6.28730 NA intron (NM_001718, intron 1 of 6) intron (NM_001718, intron 1 of 6) 80132 NM_001718 654 Hs.285671 NM_001718 HPRD:00211 BMP6 VGR|VGR1 bone morphogenetic protein 6 protein-coding 13-PTNLD9-TUMOR_peak_34775 chr3 58318480 58318627 + 6.28730 NA promoter-TSS (NM_001289098) promoter-TSS (NM_001289098) -64 NM_001289098 54899 Hs.190544 NM_017771 HPRD:17936 PXK MONaKA PX domain containing serine/threonine kinase protein-coding 13-PTNLD9-TUMOR_peak_754 chr1 26508257 26508412 + 6.28730 NA intron (NM_001297647, intron 3 of 20) intron (NM_001297647, intron 3 of 20) 4352 NR_023345 10256 Hs.16232 NM_006314 ENSG00000142675 CNKSR1 CNK|CNK1 connector enhancer of kinase suppressor of Ras 1 protein-coding 13-PTNLD9-TUMOR_peak_15381 chr14 24712568 24712814 + 6.28462 NA promoter-TSS (NM_012461) promoter-TSS (NM_012461) -811 NM_012461 26277 Hs.496191 NM_012461 HPRD:16056 TINF2 DKCA3|TIN2 TERF1 (TRF1)-interacting nuclear factor 2 protein-coding 13-PTNLD9-TUMOR_peak_33318 chr22 41048785 41048942 + 6.28279 NA Intergenic L2c|LINE|L2 -16140 NM_001282661 57591 Hs.654688 NM_020831 HPRD:10445 MKL1 BSAC|MAL|MRTF-A megakaryoblastic leukemia (translocation) 1 protein-coding 13-PTNLD9-TUMOR_peak_38681 chr4 79488118 79488237 + 6.28279 NA intron (NM_005139, intron 2 of 12) intron (NM_005139, intron 2 of 12) 15435 NM_005139 306 Hs.480042 NM_005139 HPRD:00111 ANXA3 ANX3 annexin A3 protein-coding 13-PTNLD9-TUMOR_peak_21506 chr17 49243967 49244217 + 6.28279 NA promoter-TSS (NM_001018138) promoter-TSS (NM_001018138) 9 NM_001018138 4831 Hs.463456 NM_002512 HPRD:01132 NME2 NDKB|NDPK-B|NDPKB|NM23-H2|NM23B|PUF NME/NM23 nucleoside diphosphate kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_13333 chr12 72056642 72056851 + 6.28279 NA promoter-TSS (NM_031435) promoter-TSS (NM_031435) -931 NM_031435 83591 Hs.245798 NM_031435 HPRD:10896 THAP2 - THAP domain containing, apoptosis associated protein 2 protein-coding 13-PTNLD9-TUMOR_peak_54859 chr9 131398370 131398532 + 6.28279 NA intron (NM_052844, intron 4 of 8) intron (NM_052844, intron 4 of 8) 20678 NM_052844 89891 Hs.495240 NM_052844 HPRD:15666 WDR34 DIC5|FAP133|SRTD11|bA216B9.3 WD repeat domain 34 protein-coding 13-PTNLD9-TUMOR_peak_29758 chr2 214016931 214017055 + 6.28279 NA promoter-TSS (NM_001079526) promoter-TSS (NM_001079526) -660 NM_001079526 22807 Hs.604950 NM_016260 HPRD:05872 IKZF2 ANF1A2|HELIOS|ZNF1A2|ZNFN1A2 IKAROS family zinc finger 2 (Helios) protein-coding 13-PTNLD9-TUMOR_peak_43518 chr6 3248032 3248148 + 6.28279 NA Intergenic Intergenic -11072 NM_001128591 389362 Hs.207069 NM_001128591 ENSG00000180822 PSMG4 C6orf86|PAC4|bA506K6.2 proteasome (prosome, macropain) assembly chaperone 4 protein-coding 13-PTNLD9-TUMOR_peak_1650 chr1 47223392 47223501 + 6.28279 NA Intergenic Intergenic -38710 NM_014774 9813 Hs.707688 NM_014774 HPRD:17191 EFCAB14 KIAA0494 EF-hand calcium binding domain 14 protein-coding 13-PTNLD9-TUMOR_peak_3778 chr1 154378363 154378796 + 6.28094 NA intron (NM_181359, intron 1 of 8) intron (NM_181359, intron 1 of 8) 910 NM_181359 3570 Hs.135087 NM_000565 HPRD:01000 IL6R CD126|IL-6R-1|IL-6RA|IL6Q|IL6RA|IL6RQ|gp80 interleukin 6 receptor protein-coding 13-PTNLD9-TUMOR_peak_47866 chr7 72936095 72936222 + 6.27179 NA exon (NM_032408, exon 1 of 20) exon (NM_032408, exon 1 of 20) 457 NM_032408 9031 Hs.743372 NM_023005 HPRD:10416 BAZ1B WBSCR10|WBSCR9|WSTF bromodomain adjacent to zinc finger domain, 1B protein-coding 13-PTNLD9-TUMOR_peak_20432 chr17 8126099 8126413 + 6.27179 NA non-coding (NR_026951, exon 2 of 3) non-coding (NR_026951, exon 2 of 3) 1105 NR_026951 284029 Hs.121692 NM_173621 HPRD:08755 LINC00324 C17orf44|NCRNA00324 long intergenic non-protein coding RNA 324 ncRNA 13-PTNLD9-TUMOR_peak_29395 chr2 192542125 192542242 + 6.27179 NA promoter-TSS (NM_001254736) promoter-TSS (NM_001254736) -615 NM_001254736 64859 Hs.591610 NM_022837 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_28533 chr2 134575411 134575554 + 6.27179 NA Intergenic L1MA4A|LINE|L1 -249451 NM_207363 344148 Hs.537329 NM_207363 HPRD:16936 NCKAP5 ERIH1|ERIH2|NAP5 NCK-associated protein 5 protein-coding 13-PTNLD9-TUMOR_peak_3914 chr1 156097051 156097154 + 6.27127 NA intron (NM_001282624, intron 2 of 10) intron (NM_001282624, intron 2 of 10) 1194 NM_001257374 4000 Hs.594444 NM_005572 HPRD:01035 LMNA CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|PRO1 lamin A/C protein-coding 13-PTNLD9-TUMOR_peak_30870 chr20 33908273 33908429 + 6.27026 NA intron (NM_018244, intron 7 of 9) intron (NM_018244, intron 7 of 9) -28126 NM_178468 128876 Hs.592149 NM_178468 HPRD:12743 FAM83C C20orf128|dJ614O4.7 family with sequence similarity 83, member C protein-coding 13-PTNLD9-TUMOR_peak_5221 chr1 205600274 205600609 + 6.27026 NA intron (NM_021795, intron 1 of 2) intron (NM_021795, intron 1 of 2) 1559 NM_001973 2005 Hs.497520 NM_001973 HPRD:02592 ELK4 SAP1 ELK4, ETS-domain protein (SRF accessory protein 1) protein-coding 13-PTNLD9-TUMOR_peak_19370 chr16 54480138 54480381 + 6.27026 NA Intergenic Intergenic -159881 NM_024336 79191 Hs.499205 NM_024336 HPRD:17162 IRX3 IRX-1|IRXB1 iroquois homeobox 3 protein-coding 13-PTNLD9-TUMOR_peak_54910 chr9 132648118 132648239 + 6.26129 NA Intergenic CpG 16294 NR_106914 102466750 NR_106914 MIR6855 hsa-mir-6855 microRNA 6855 ncRNA 13-PTNLD9-TUMOR_peak_28056 chr2 112029372 112029493 + 6.26129 NA Intergenic Intergenic 49231 NR_039636 100616341 NR_039636 miRBase:MI0016777 MIR4435-2 - microRNA 4435-2 ncRNA 13-PTNLD9-TUMOR_peak_49546 chr7 148261711 148261863 + 6.26129 NA Intergenic LTR8|LTR|ERV1 -25870 NM_145304 202865 Hs.352212 NM_145304 HPRD:12921 C7orf33 - chromosome 7 open reading frame 33 protein-coding 13-PTNLD9-TUMOR_peak_29219 chr2 179058688 179058928 + 6.26129 NA promoter-TSS (NM_001201481) promoter-TSS (NM_001201481) -400 NM_001201480 114880 Hs.318775 NM_032523 HPRD:09476 OSBPL6 ORP6 oxysterol binding protein-like 6 protein-coding 13-PTNLD9-TUMOR_peak_4180 chr1 162205471 162205565 + 6.25945 NA intron (NM_001164757, intron 2 of 9) intron (NM_001164757, intron 2 of 9) 78621 NR_039798 100616386 NR_039798 MIR4654 - microRNA 4654 ncRNA 13-PTNLD9-TUMOR_peak_37839 chr4 7803954 7804081 + 6.25945 NA intron (NM_198595, intron 9 of 16) intron (NM_198595, intron 9 of 16) 48200 NR_026892 84740 Hs.663029 NM_032654 ENSG00000272620 AFAP1-AS1 AFAP1-AS|AFAP1AS AFAP1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_12559 chr12 39193509 39193639 + 6.25945 NA intron (NM_153634, intron 6 of 19) L1HS|LINE|L1 105846 NM_153634 144402 Hs.40910 NM_153634 HPRD:16747 CPNE8 - copine VIII protein-coding 13-PTNLD9-TUMOR_peak_39258 chr4 123843533 123843822 + 6.25945 NA promoter-TSS (NM_007083) promoter-TSS (NM_007083) 84 NM_007083 11162 Hs.558459 NM_007083 HPRD:05880 NUDT6 ASFGF2|FGF-AS|FGF2AS|GFG-1|GFG1 nudix (nucleoside diphosphate linked moiety X)-type motif 6 protein-coding 13-PTNLD9-TUMOR_peak_34960 chr3 72388561 72388703 + 6.25945 NA Intergenic Intergenic 107142 NM_012234 23429 Hs.7910 NM_012234 RYBP AAP1|DEDAF|YEAF1 RING1 and YY1 binding protein protein-coding 13-PTNLD9-TUMOR_peak_6381 chr10 5985567 5985771 + 6.25945 NA Intergenic Intergenic 33905 NM_002189 3601 Hs.445124 NM_002189 HPRD:03045 IL15RA CD215 interleukin 15 receptor, alpha protein-coding 13-PTNLD9-TUMOR_peak_32110 chr21 32666408 32666621 + 6.25945 NA intron (NM_003253, intron 3 of 28) intron (NM_003253, intron 3 of 28) -255719 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 13-PTNLD9-TUMOR_peak_52606 chr9 751350 751513 + 6.25945 NA Intergenic MLT1I|LTR|ERVL-MaLR 44625 NM_153186 23189 Hs.306764 NM_015158 HPRD:09651 KANK1 ANKRD15|CPSQ2|KANK KN motif and ankyrin repeat domains 1 protein-coding 13-PTNLD9-TUMOR_peak_29033 chr2 170440814 170440932 + 6.25945 NA promoter-TSS (NM_004792) promoter-TSS (NM_004792) 23 NM_004792 9360 Hs.470544 NM_004792 HPRD:12083 PPIG CARS-Cyp|CYP|SCAF10|SRCyp peptidylprolyl isomerase G (cyclophilin G) protein-coding 13-PTNLD9-TUMOR_peak_31582 chr20 52538118 52538244 + 6.25945 NA Intergenic Intergenic -45933 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_24406 chr19 18518945 18519198 + 6.25945 NA Intergenic Intergenic -10656 NM_145256 126364 Hs.332156 NM_145256 HPRD:09597 LRRC25 MAPA leucine rich repeat containing 25 protein-coding 13-PTNLD9-TUMOR_peak_31091 chr20 40820098 40820375 + 6.25945 NA intron (NM_133170, intron 17 of 31) intron (NM_133170, intron 17 of 31) -493887 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 13-PTNLD9-TUMOR_peak_53367 chr9 46123220 46123339 + 6.25945 NA Intergenic Intergenic 6336 NR_103714 100289124 Hs.567050 NM_001024608 ENSG00000237198 FAM27E2 FAM27E1 family with sequence similarity 27, member E2 ncRNA 13-PTNLD9-TUMOR_peak_26402 chr2 27780876 27781140 + 6.25945 NA Intergenic SVA_E|Other|Other -18381 NM_032266 84226 Hs.131021 NM_032266 HPRD:09849 C2orf16 - chromosome 2 open reading frame 16 protein-coding 13-PTNLD9-TUMOR_peak_12789 chr12 52167363 52167457 + 6.25945 NA intron (NM_014191, intron 19 of 26) L1MB8|LINE|L1 58291 NM_001013690 401720 Hs.648218 NM_001013690 FIGNL2 - fidgetin-like 2 protein-coding 13-PTNLD9-TUMOR_peak_47872 chr7 73002245 73002535 + 6.25945 NA Intergenic Intergenic -9377 NM_012453 26608 Hs.647044 NM_012453 HPRD:09319 TBL2 WBSCR13|WS-betaTRP transducin (beta)-like 2 protein-coding 13-PTNLD9-TUMOR_peak_6655 chr10 22605422 22605647 + 6.25945 NA intron (NM_012071, intron 1 of 7) CpG 222 NM_001204062 100532731 Hs.380403 NM_001204062 COMMD3-BMI1 - COMMD3-BMI1 readthrough protein-coding 13-PTNLD9-TUMOR_peak_29023 chr2 169926030 169926129 + 6.25821 NA 5' UTR (NM_199204, exon 2 of 6) 5' UTR (NM_199204, exon 2 of 6) 2534 NM_199204 10170 Hs.179608 NM_005771 HPRD:09916 DHRS9 3-alpha-HSD|3ALPHA-HSD|RDH-E2|RDH-TBE|RDH15|RDHL|RDHTBE|RETSDR8|SDR9C4 dehydrogenase/reductase (SDR family) member 9 protein-coding 13-PTNLD9-TUMOR_peak_30949 chr20 35773473 35773703 + 6.25446 NA intron (NM_213632, intron 8 of 11) Tigger3c|DNA|TcMar-Tigger -33868 NM_002951 6185 Hs.370895 NM_002951 HPRD:01609 RPN2 RIBIIR|RPN-II|RPNII|SWP1 ribophorin II protein-coding 13-PTNLD9-TUMOR_peak_33386 chr22 43318095 43318285 + 6.25446 NA intron (NM_001184970, intron 1 of 10) intron (NM_001184970, intron 1 of 10) 24857 NM_007229 11252 Hs.162877 NM_007229 HPRD:05390 PACSIN2 SDPII protein kinase C and casein kinase substrate in neurons 2 protein-coding 13-PTNLD9-TUMOR_peak_31488 chr20 49983058 49983180 + 6.25446 NA Intergenic Intergenic 86395 NR_036162 100422889 NR_036162 MIR3194 - microRNA 3194 ncRNA 13-PTNLD9-TUMOR_peak_14900 chr13 78271570 78271689 + 6.25446 NA promoter-TSS (NM_001242868) promoter-TSS (NM_001242868) -360 NM_001242868 122060 Hs.349955 NM_144595 HPRD:13400 SLAIN1 C13orf32 SLAIN motif family, member 1 protein-coding 13-PTNLD9-TUMOR_peak_22595 chr18 10726536 10726784 + 6.25446 NA intron (NM_022068, intron 33 of 51) CpG 64730 NR_110777 101927410 Hs.436902 NR_110777 ENSG00000260779 LOC101927410 - uncharacterized LOC101927410 ncRNA 13-PTNLD9-TUMOR_peak_4313 chr1 167722364 167722546 + 6.25446 NA intron (NM_024569, intron 1 of 4) intron (NM_024569, intron 1 of 4) 31268 NM_001146191 9019 Hs.493919 NM_003953 HPRD:05086 MPZL1 MPZL1b|PZR|PZR1b|PZRa|PZRb myelin protein zero-like 1 protein-coding 13-PTNLD9-TUMOR_peak_53285 chr9 41890085 41890228 + 6.25446 NA Intergenic MER52A|LTR|ERV1 64920 NR_015363 389741 Hs.380240 NM_203448 GLIDR LINC01172 glioblastoma down-regulated RNA ncRNA 13-PTNLD9-TUMOR_peak_41112 chr5 67382714 67382868 + 6.25446 NA Intergenic Intergenic -102913 NR_105003 102467655 Hs.544102 NR_105003 LOC102467655 - uncharacterized LOC102467655 ncRNA 13-PTNLD9-TUMOR_peak_36442 chr3 153090186 153090342 + 6.25446 NA Intergenic L2c|LINE|L2 -112020 NM_001101337 152118 Hs.58586 NM_001101337 ENSG00000237787 C3orf79 - chromosome 3 open reading frame 79 protein-coding 13-PTNLD9-TUMOR_peak_27696 chr2 96108596 96108690 + 6.25446 NA Intergenic Intergenic 40195 NM_016044 51011 Hs.531247 NM_016044 HPRD:13287 FAHD2A - fumarylacetoacetate hydrolase domain containing 2A protein-coding 13-PTNLD9-TUMOR_peak_46162 chr6 140300643 140300752 + 6.25446 NA intron (NR_121624, intron 1 of 2) intron (NR_121624, intron 1 of 2) 3241 NR_121622 100507477 Hs.179213 NR_121622 LOC100507477 - uncharacterized LOC100507477 ncRNA 13-PTNLD9-TUMOR_peak_38863 chr4 89537589 89537712 + 6.25446 NA intron (NM_014606, intron 3 of 25) intron (NM_014606, intron 3 of 25) 24076 NM_014606 8916 Hs.35804 NM_014606 HPRD:16093 HERC3 - HECT and RLD domain containing E3 ubiquitin protein ligase 3 protein-coding 13-PTNLD9-TUMOR_peak_10965 chr11 95072870 95073011 + 6.25446 NA Intergenic Intergenic -107235 NM_001271594 143686 Hs.120633 NM_144665 HPRD:09682 SESN3 SEST3 sestrin 3 protein-coding 13-PTNLD9-TUMOR_peak_42572 chr5 148751062 148751169 + 6.25446 NA Intergenic Intergenic 7723 NM_014443 27190 Hs.156979 NM_014443 HPRD:05217 IL17B IL-17B|IL-20|NIRF|ZCYTO7 interleukin 17B protein-coding 13-PTNLD9-TUMOR_peak_30268 chr20 1614259 1614445 + 6.25446 NA non-coding (NR_110090, exon 1 of 3) non-coding (NR_110090, exon 1 of 3) 198 NR_110090 101929010 Hs.570358 NR_110090 ENSG00000237914 SIRPG-AS1 - SIRPG antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_17857 chr15 84855223 84855430 + 6.25151 NA Intergenic Intergenic -5274 NR_033738 440300 Hs.546565 NR_033738 LOC440300 - chondroitin sulfate proteoglycan 4 pseudogene pseudo 13-PTNLD9-TUMOR_peak_47606 chr7 57992145 57992239 + 6.25032 NA Intergenic ALR/Alpha|Satellite|centr 482309 NM_001159279 441234 Hs.533121 NM_001159279 ENSG00000182111 ZNF716 - zinc finger protein 716 protein-coding 13-PTNLD9-TUMOR_peak_56050 chrX 64862910 64863004 + 6.25010 NA Intergenic Intergenic -24554 NM_002444 4478 Hs.87752 NM_002444 HPRD:02399 MSN HEL70 moesin protein-coding 13-PTNLD9-TUMOR_peak_41384 chr5 78477276 78477377 + 6.25010 NA Intergenic Intergenic -54599 NM_152405 133746 Hs.482605 NM_152405 HPRD:05045 JMY WHDC1L3 junction mediating and regulatory protein, p53 cofactor protein-coding 13-PTNLD9-TUMOR_peak_9691 chr11 46331531 46331625 + 6.25010 NA exon (NM_052854, exon 4 of 12) exon (NM_052854, exon 4 of 12) -22877 NM_201532 8525 Hs.502461 NM_003646 HPRD:03260 DGKZ DAGK5|DAGK6|DGK-ZETA|hDGKzeta diacylglycerol kinase, zeta protein-coding 13-PTNLD9-TUMOR_peak_39399 chr4 139326811 139327013 + 6.25010 NA intron (NR_051987, intron 2 of 2) MIR|SINE|MIR 96047 NR_051987 100874047 Hs.570848 NR_051987 ENSG00000251372 LINC00499 - long intergenic non-protein coding RNA 499 ncRNA 13-PTNLD9-TUMOR_peak_40449 chr5 17181090 17181320 + 6.25010 NA intron (NR_027253, intron 1 of 2) MLT1L|LTR|ERVL-MaLR -35727 NM_001271606 10409 Hs.201641 NM_006317 HPRD:08389 BASP1 CAP-23|CAP23|NAP-22|NAP22 brain abundant, membrane attached signal protein 1 protein-coding 13-PTNLD9-TUMOR_peak_9626 chr11 44117147 44117278 + 6.25010 NA promoter-TSS (NM_000401) promoter-TSS (NM_000401) 113 NM_207122 2132 Hs.368404 NM_000401 HPRD:00599 EXT2 SOTV exostosin glycosyltransferase 2 protein-coding 13-PTNLD9-TUMOR_peak_21131 chr17 41608284 41608428 + 6.25010 NA promoter-TSS (NM_001261439) promoter-TSS (NM_001261439) -553 NM_001261439 2118 Hs.434059 NM_001986 HPRD:02833 ETV4 E1A-F|E1AF|PEA3|PEAS3 ets variant 4 protein-coding 13-PTNLD9-TUMOR_peak_36444 chr3 153317574 153317812 + 6.25010 NA Intergenic Intergenic 115409 NM_001101337 152118 Hs.58586 NM_001101337 ENSG00000237787 C3orf79 - chromosome 3 open reading frame 79 protein-coding 13-PTNLD9-TUMOR_peak_1713 chr1 48615934 48616106 + 6.25010 NA intron (NR_026749, intron 7 of 9) L1PA2|LINE|L1 32080 NR_026749 391037 Hs.585393 NR_026749 SKINTL BTN12|SKINT1|SKINTP Skint-like, pseudogene pseudo 13-PTNLD9-TUMOR_peak_16151 chr14 69604745 69605111 + 6.25010 NA intron (NM_001284206, intron 1 of 8) intron (NM_001284206, intron 1 of 8) 14388 NM_001284207 8816 Hs.509780 NM_003861 HPRD:16032 DCAF5 BCRG2|BCRP2|D14S1461E|WDR22 DDB1 and CUL4 associated factor 5 protein-coding 13-PTNLD9-TUMOR_peak_17434 chr15 64445876 64445970 + 6.25010 NA intron (NR_073534, intron 5 of 6) intron (NR_073534, intron 5 of 6) 2007 NR_073534 79856 Hs.744250 NM_024798 HPRD:15412 SNX22 - sorting nexin 22 protein-coding 13-PTNLD9-TUMOR_peak_17733 chr15 78505105 78505210 + 6.25010 NA intron (NM_015162, intron 1 of 13) intron (NM_015162, intron 1 of 13) 21892 NM_015162 23205 Hs.655760 NM_015162 ACSBG1 BG|BG1|BGM|GR-LACS|LPD acyl-CoA synthetase bubblegum family member 1 protein-coding 13-PTNLD9-TUMOR_peak_22103 chr17 75243227 75243322 + 6.25010 NA Intergenic CpG -34218 NM_001113491 10801 Hs.440932 NM_006640 HPRD:10360 SEPT9 AF17q25|MSF|MSF1|NAPB|PNUTL4|SINT1|SeptD1 septin 9 protein-coding 13-PTNLD9-TUMOR_peak_44394 chr6 28984976 28985109 + 6.25010 NA Intergenic MamGypLTR3|LTR|Gypsy -12005 NM_001010877 282890 Hs.148218 NM_001010877 HPRD:18325 ZNF311 zf31 zinc finger protein 311 protein-coding 13-PTNLD9-TUMOR_peak_13363 chr12 75405042 75405148 + 6.25010 NA Intergenic Intergenic 198433 NM_001260498 3747 Hs.27214 NM_139136 HPRD:08883 KCNC2 KV3.2 potassium voltage-gated channel, Shaw-related subfamily, member 2 protein-coding 13-PTNLD9-TUMOR_peak_55937 chrX 57618936 57619122 + 6.25010 NA exon (NM_007157, exon 1 of 1) exon (NM_007157, exon 1 of 1) 760 NM_007157 158586 Hs.156257 NM_007157 HPRD:11777 ZXDB ZNF905|dJ83L6.1 zinc finger, X-linked, duplicated B protein-coding 13-PTNLD9-TUMOR_peak_54270 chr9 104948401 104948506 + 6.25010 NA Intergenic Intergenic -333466 NR_103830 414319 Hs.385790 NR_103830 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 13-PTNLD9-TUMOR_peak_39130 chr4 115321810 115321908 + 6.25010 NA Intergenic Tigger13a|DNA|TcMar-Tigger -197752 NM_001128174 7368 Hs.144197 NM_003360 HPRD:03186 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 13-PTNLD9-TUMOR_peak_48358 chr7 95102244 95102361 + 6.25010 NA Intergenic Intergenic -12911 NM_016116 51666 Hs.602765 NM_016116 HPRD:05770 ASB4 ASB-4 ankyrin repeat and SOCS box containing 4 protein-coding 13-PTNLD9-TUMOR_peak_2039 chr1 63371096 63371258 + 6.25010 NA Intergenic Intergenic 121400 NM_032852 84938 Hs.7353 NM_032852 HPRD:07473 ATG4C APG4-C|APG4C|AUTL1|AUTL3 autophagy related 4C, cysteine peptidase protein-coding 13-PTNLD9-TUMOR_peak_31015 chr20 37736495 37736605 + 6.25010 NA Intergenic Intergenic 116841 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LOC339568 - uncharacterized LOC339568 ncRNA 13-PTNLD9-TUMOR_peak_46001 chr6 125033410 125033573 + 6.25010 NA intron (NM_001300740, intron 3 of 5) L1PA2|LINE|L1 -250200 NM_001286398 154214 Hs.368639 NM_152553 HPRD:17125 RNF217 C6orf172|IBRDC1|dJ84N20.1 ring finger protein 217 protein-coding 13-PTNLD9-TUMOR_peak_52933 chr9 24118301 24118418 + 6.25010 NA Intergenic LTR8|LTR|ERV1 -292296 NM_004432 1993 Hs.166109 NM_004432 HPRD:03396 ELAVL2 HEL-N1|HELN1|HUB ELAV like neuron-specific RNA binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_42877 chr5 161601710 161601920 + 6.25010 NA Intergenic Intergenic 107167 NM_198904 2566 Hs.7195 NM_000816 HPRD:00663 GABRG2 CAE2|ECA2|GEFSP3 gamma-aminobutyric acid (GABA) A receptor, gamma 2 protein-coding 13-PTNLD9-TUMOR_peak_6891 chr10 33260792 33260897 + 6.25010 NA Intergenic L3b|LINE|CR1 -13551 NM_002211 3688 Hs.643813 NM_002211 HPRD:00628 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) protein-coding 13-PTNLD9-TUMOR_peak_56274 chrX 100306598 100306704 + 6.25010 NA 5' UTR (NM_001167971, exon 2 of 14) 5' UTR (NM_001167971, exon 2 of 14) 454 NM_001167971 79979 Hs.496501 NM_024917 HPRD:06520 TRMT2B CXorf34|dJ341D10.3 tRNA methyltransferase 2 homolog B (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_41177 chr5 69712224 69712337 + 6.24875 NA intron (NR_033417, intron 1 of 14) AluSz|SINE|Alu 1083 NR_033417 653238 Hs.607501 NM_001098729 GTF2H2B - general transcription factor IIH, polypeptide 2B (pseudogene) pseudo 13-PTNLD9-TUMOR_peak_17849 chr15 84052500 84052659 + 6.24875 NA Intergenic L1PA2|LINE|L1 -63401 NM_001301109 6457 Hs.270055 NM_003027 HPRD:04528 SH3GL3 CNSA3|EEN-B2|HsT19371|SH3D2C|SH3P13 SH3-domain GRB2-like 3 protein-coding 13-PTNLD9-TUMOR_peak_48006 chr7 75519231 75519370 + 6.24875 NA Intergenic L2b|LINE|L2 10983 NM_001040457 57414 Hs.488827 NM_020684 HPRD:11492 RHBDD2 NPD007|RHBDL7 rhomboid domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_39312 chr4 128887083 128887271 + 6.24452 NA promoter-TSS (NM_152778) promoter-TSS (NM_152778) -38 NM_152778 256471 Hs.480701 NM_152778 HPRD:14557 MFSD8 CLN7 major facilitator superfamily domain containing 8 protein-coding 13-PTNLD9-TUMOR_peak_24892 chr19 38852873 38853357 + 6.23521 NA exon (NM_021185, exon 19 of 29) exon (NM_021185, exon 19 of 29) -12075 NM_002812 5714 Hs.78466 NM_002812 HPRD:10171 PSMD8 HEL-S-91n|HIP6|HYPF|Nin1p|Rpn12|S14|p31 proteasome (prosome, macropain) 26S subunit, non-ATPase, 8 protein-coding 13-PTNLD9-TUMOR_peak_49735 chr7 153016922 153017016 + 6.23521 NA Intergenic L1PA8|LINE|L1 92350 NR_125776 103724390 Hs.614280 NR_125776 LINC01287 TCONS_l2_00027522 long intergenic non-protein coding RNA 1287 ncRNA 13-PTNLD9-TUMOR_peak_39067 chr4 110624251 110624351 + 6.23521 NA intron (NM_001226, intron 1 of 6) CpG 328 NM_001226 839 Hs.654616 NM_001226 HPRD:03321 CASP6 MCH2 caspase 6, apoptosis-related cysteine peptidase protein-coding 13-PTNLD9-TUMOR_peak_1707 chr1 48509363 48509457 + 6.23521 NA Intergenic Intergenic -46848 NM_001194986 388630 Hs.61504 NM_001194986 ENSG00000269113 TRABD2B TIKI2 TraB domain containing 2B protein-coding 13-PTNLD9-TUMOR_peak_38959 chr4 100870304 100870432 + 6.23428 NA intron (NM_002106, intron 3 of 4) intron (NM_002106, intron 3 of 4) 1144 NM_002106 3015 Hs.119192 NM_002106 HPRD:00823 H2AFZ H2A.Z-1|H2A.z|H2A/z|H2AZ H2A histone family, member Z protein-coding 13-PTNLD9-TUMOR_peak_54737 chr9 126130825 126131077 + 6.23428 NA promoter-TSS (NR_104603) promoter-TSS (NR_104603) -107 NR_104603 286204 Hs.568340 NM_173689 HPRD:13093 CRB2 - crumbs family member 2 protein-coding 13-PTNLD9-TUMOR_peak_5950 chr1 235243325 235243450 + 6.23097 NA Intergenic Intergenic 47865 NR_002956 677802 Hs.744743 NR_002956 SNORA14B ACA14b small nucleolar RNA, H/ACA box 14B snoRNA 13-PTNLD9-TUMOR_peak_4439 chr1 173446724 173446929 + 6.23097 NA promoter-TSS (NR_037845) promoter-TSS (NR_037845) 340 NM_004905 9588 Hs.120 NM_004905 HPRD:03817 PRDX6 1-Cys|AOP2|HEL-S-128m|NSGPx|PRX|aiPLA2|p29 peroxiredoxin 6 protein-coding 13-PTNLD9-TUMOR_peak_30609 chr20 23330834 23330948 + 6.23097 NA promoter-TSS (NM_013248) promoter-TSS (NM_013248) -482 NM_013248 29107 Hs.516933 NM_013248 HPRD:16159 NXT1 MTR2|P15 nuclear transport factor 2-like export factor 1 protein-coding 13-PTNLD9-TUMOR_peak_11551 chr11 126174131 126174312 + 6.23058 NA intron (NM_014026, intron 1 of 5) intron (NM_014026, intron 1 of 5) 574 NM_014026 28960 Hs.504249 NM_014026 HPRD:16787 DCPS DCS1|HINT-5|HINT5|HSL1 decapping enzyme, scavenger protein-coding 13-PTNLD9-TUMOR_peak_20172 chr16 90113353 90113582 + 6.23058 NA non-coding (NR_027336, exon 2 of 4) non-coding (NR_027336, exon 2 of 4) 566 NR_027335 100130015 Hs.431792 NR_027335 ENSG00000222019 URAHP URAH urate (hydroxyiso-) hydrolase, pseudogene pseudo 13-PTNLD9-TUMOR_peak_24682 chr19 33569115 33569243 + 6.23058 NA Intergenic LTR24|LTR|ERV1 -2607 NM_018025 55094 Hs.466436 NM_018025 HPRD:11008 GPATCH1 ECGP|GPATC1 G patch domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_34422 chr3 45859391 45859485 + 6.23058 NA Intergenic Tigger15a|DNA|TcMar-Tigger -21403 NM_020208 54716 Hs.413095 NM_020208 HPRD:16128 SLC6A20 SIT1|XT3|Xtrp3 solute carrier family 6 (proline IMINO transporter), member 20 protein-coding 13-PTNLD9-TUMOR_peak_24795 chr19 36499663 36499846 + 6.23058 NA promoter-TSS (NM_001039876) promoter-TSS (NM_001039876) -59 NM_001297735 163183 Hs.436743 NM_153233 HPRD:08776 SYNE4 C19orf46|DFNB76|Nesp4 spectrin repeat containing, nuclear envelope family member 4 protein-coding 13-PTNLD9-TUMOR_peak_18019 chr15 93465091 93465320 + 6.23058 NA intron (NM_001271, intron 2 of 38) intron (NM_001271, intron 2 of 38) 17576 NR_036136 100422995 NR_036136 MIR3175 - microRNA 3175 ncRNA 13-PTNLD9-TUMOR_peak_25351 chr19 49542052 49542148 + 6.23058 NA Intergenic Intergenic 1823 NR_004383 100126780 Hs.621635 NR_004383 SNAR-G1 - small ILF3/NF90-associated RNA G1 snRNA 13-PTNLD9-TUMOR_peak_36427 chr3 152317337 152317662 + 6.23058 NA Intergenic HERVH-int|LTR|ERV1 -235237 NM_002563 5028 Hs.654526 NM_002563 HPRD:03103 P2RY1 P2Y1 purinergic receptor P2Y, G-protein coupled, 1 protein-coding 13-PTNLD9-TUMOR_peak_32343 chr21 40394571 40394737 + 6.22627 NA Intergenic Intergenic -44954 NR_109962 101928435 Hs.385528 NR_109962 ENSG00000232837 LOC101928435 - uncharacterized LOC101928435 ncRNA 13-PTNLD9-TUMOR_peak_4153 chr1 161500131 161500251 + 6.22627 NA Intergenic tRNA-Leu-CTG|tRNA|tRNA 6155 NM_002155 3310 Hs.654614 NM_002155 HPRD:00775 HSPA6 - heat shock 70kDa protein 6 (HSP70B') protein-coding 13-PTNLD9-TUMOR_peak_24307 chr19 17352673 17352853 + 6.22627 NA intron (NM_005234, intron 1 of 3) AluSx|SINE|Alu 3388 NM_005234 2063 Hs.466148 NM_005234 HPRD:00583 NR2F6 EAR-2|EAR2|ERBAL2 nuclear receptor subfamily 2, group F, member 6 protein-coding 13-PTNLD9-TUMOR_peak_49616 chr7 150065139 150065249 + 6.22526 NA promoter-TSS (NM_001099696) promoter-TSS (NM_001099696) -685 NM_001099696 29803 Hs.647086 NM_013400 HPRD:17966 REPIN1 AP4|RIP60|ZNF464|Zfp464 replication initiator 1 protein-coding 13-PTNLD9-TUMOR_peak_43637 chr6 6661999 6662312 + 6.22183 NA Intergenic Intergenic -39096 NR_026970 285780 Hs.655737 NM_173675 HPRD:08165 LY86-AS1 LY86-AS|LY86AS LY86 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_970 chr1 32254210 32254327 + 6.22183 NA Intergenic CpG -24604 NM_001294335 576 Hs.524138 NM_001703 HPRD:04063 BAI2 - brain-specific angiogenesis inhibitor 2 protein-coding 13-PTNLD9-TUMOR_peak_26533 chr2 33173049 33173161 + 6.22183 NA intron (NM_206943, intron 1 of 33) CpG 736 NM_206943 4052 Hs.619315 NM_000627 HPRD:01039 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_30179 chr2 241190966 241191133 + 6.22183 NA Intergenic Intergenic -110976 NM_148961 150677 Hs.148586 NM_148961 HPRD:09714 OTOS OTOSP otospiralin protein-coding 13-PTNLD9-TUMOR_peak_16997 chr15 34330634 34330747 + 6.22183 NA intron (NM_020371, intron 1 of 5) CpG 613 NM_020371 57099 Hs.555966 NM_020371 HPRD:05588 AVEN PDCD12 apoptosis, caspase activation inhibitor protein-coding 13-PTNLD9-TUMOR_peak_29058 chr2 171830022 171830180 + 6.22183 NA Intergenic CpG 45065 NM_015530 26003 Hs.431317 NM_015530 HPRD:08303 GORASP2 GOLPH6|GRASP55|GRS2|p59 golgi reassembly stacking protein 2, 55kDa protein-coding 13-PTNLD9-TUMOR_peak_56090 chrX 69353601 69353754 + 6.22183 NA 5' UTR (NM_001551, exon 2 of 7) 5' UTR (NM_001551, exon 2 of 7) 359 NM_001551 3476 Hs.496267 NM_001551 HPRD:02140 IGBP1 ALPHA-4|IBP1 immunoglobulin (CD79A) binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_40911 chr5 55646512 55646631 + 6.22183 NA Intergenic Intergenic -117385 NM_024669 79722 Hs.436214 NM_024669 HPRD:07758 ANKRD55 - ankyrin repeat domain 55 protein-coding 13-PTNLD9-TUMOR_peak_35726 chr3 126113648 126113778 + 6.22183 NA promoter-TSS (NR_103788) promoter-TSS (NR_103788) -69 NM_182628 348807 Hs.591305 NM_182628 HPRD:08805 CCDC37 MIA1 coiled-coil domain containing 37 protein-coding 13-PTNLD9-TUMOR_peak_49530 chr7 144166425 144166660 + 6.22183 NA intron (NM_022445, intron 8 of 8) intron (NM_022445, intron 8 of 8) -59222 NM_001080413 135935 Hs.558628 NM_001080413 ENSG00000106410 NOBOX OG-2|OG2|OG2X|POF5|TCAG_12042 NOBOX oogenesis homeobox protein-coding 13-PTNLD9-TUMOR_peak_47455 chr7 48152118 48152286 + 6.22183 NA Intergenic Intergenic 23351 NM_001287430 7378 Hs.488240 NM_003364 HPRD:08932 UPP1 UDRPASE|UP|UPASE|UPP uridine phosphorylase 1 protein-coding 13-PTNLD9-TUMOR_peak_5330 chr1 209826472 209826612 + 6.22183 NA promoter-TSS (NM_001127641) promoter-TSS (NM_001127641) -722 NM_000228 3914 Hs.497636 NM_000228 HPRD:01032 LAMB3 BM600-125KDA|LAM5|LAMNB1 laminin, beta 3 protein-coding 13-PTNLD9-TUMOR_peak_2259 chr1 79338591 79338717 + 6.22183 NA Intergenic HERVH-int|LTR|ERV1 133841 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ELTD1 ETL|KPG_003 EGF, latrophilin and seven transmembrane domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_40164 chr5 926871 927239 + 6.22183 NA Intergenic CpG 34086 NM_004237 9319 Hs.436187 NM_004237 HPRD:05145 TRIP13 16E1BP thyroid hormone receptor interactor 13 protein-coding 13-PTNLD9-TUMOR_peak_51462 chr8 102845034 102845202 + 6.22183 NA intron (NM_001040628, intron 4 of 7) intron (NM_001040628, intron 4 of 7) -41679 NM_032041 83988 Hs.492427 NM_032041 HPRD:09466 NCALD - neurocalcin delta protein-coding 13-PTNLD9-TUMOR_peak_34315 chr3 40546219 40546523 + 6.22183 NA Intergenic MLT1F|LTR|ERVL-MaLR -1159 NM_001256167 253639 Hs.581541 NM_175888 HPRD:15878 ZNF620 - zinc finger protein 620 protein-coding 13-PTNLD9-TUMOR_peak_20620 chr17 19092696 19092805 + 6.22176 NA Intergenic Intergenic -29945 NM_001291904 79999 Hs.677375 NM_024934 LOC79999 - uncharacterized LOC79999 protein-coding 13-PTNLD9-TUMOR_peak_44082 chr6 21732105 21732392 + 6.21256 NA intron (NR_015410, intron 2 of 11) intron (NR_015410, intron 2 of 11) 65573 NR_015410 401237 Hs.712707 NR_015410 ENSG00000272168 CASC15 LINC00340 cancer susceptibility candidate 15 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_6625 chr10 20585852 20585967 + 6.21256 NA Intergenic L1PA4|LINE|L1 -254990 NR_039822 100616383 NR_039822 miRBase:MI0017306 MIR4675 - microRNA 4675 ncRNA 13-PTNLD9-TUMOR_peak_32044 chr21 28480554 28480692 + 6.21256 NA Intergenic Intergenic -141184 NM_007038 11096 Hs.58324 NM_007038 HPRD:05420 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif, 5 protein-coding 13-PTNLD9-TUMOR_peak_22115 chr17 75418231 75418428 + 6.21256 NA intron (NM_001293696, intron 1 of 9) intron (NM_001293696, intron 1 of 9) 17178 NM_001293696 10801 Hs.440932 NM_006640 HPRD:10360 SEPT9 AF17q25|MSF|MSF1|NAPB|PNUTL4|SINT1|SeptD1 septin 9 protein-coding 13-PTNLD9-TUMOR_peak_26685 chr2 42365897 42366015 + 6.21256 NA Intergenic Intergenic -30534 NM_001145076 27436 Hs.713173 NM_019063 HPRD:06310 EML4 C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120 echinoderm microtubule associated protein like 4 protein-coding 13-PTNLD9-TUMOR_peak_19812 chr16 78027273 78027403 + 6.21256 NA Intergenic Intergenic -29105 NM_005752 10143 Hs.177936 NM_005752 HPRD:13072 CLEC3A CLECSF1 C-type lectin domain family 3, member A protein-coding 13-PTNLD9-TUMOR_peak_54286 chr9 107368650 107368873 + 6.21256 NA promoter-TSS (NM_001004481) promoter-TSS (NM_001004481) -853 NM_001004481 392376 Hs.553789 NM_001004481 HPRD:14905 OR13C2 OR37K olfactory receptor, family 13, subfamily C, member 2 protein-coding 13-PTNLD9-TUMOR_peak_36934 chr3 183217336 183217448 + 6.21256 NA exon (NM_130446, exon 4 of 7) exon (NM_130446, exon 4 of 7) -49131 NR_046687 100874019 NR_046687 KLHL6-AS1 - KLHL6 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_2980 chr1 116221788 116221904 + 6.21256 NA intron (NM_138959, intron 4 of 7) intron (NM_138959, intron 4 of 7) 36596 NM_001172412 81839 Hs.515130 NM_138959 HPRD:18279 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 13-PTNLD9-TUMOR_peak_2832 chr1 111177466 111177584 + 6.21256 NA Intergenic Intergenic -3429 NM_001204269 3737 Hs.248139 NM_004974 HPRD:01443 KCNA2 HBK5|HK4|HUKIV|KV1.2|MK2|NGK1|RBK2 potassium voltage-gated channel, shaker-related subfamily, member 2 protein-coding 13-PTNLD9-TUMOR_peak_56484 chrX 130092944 130093109 + 6.21256 NA Intergenic L1PA2|LINE|L1 -55735 NM_006375 10495 Hs.171458 NM_006375 HPRD:02234 ENOX2 APK1|COVA1|tNOX ecto-NOX disulfide-thiol exchanger 2 protein-coding 13-PTNLD9-TUMOR_peak_54258 chr9 103870245 103870406 + 6.21256 NA intron (NM_207299, intron 1 of 7) L1PA2|LINE|L1 -76992 NM_017753 54886 Hs.382683 NM_017753 HPRD:17906 LPPR1 PRG-3 lipid phosphate phosphatase-related protein type 1 protein-coding 13-PTNLD9-TUMOR_peak_43092 chr5 173345132 173345246 + 6.21256 NA intron (NM_030627, intron 2 of 9) intron (NM_030627, intron 2 of 9) 29858 NM_030627 80315 Hs.127126 NM_030627 HPRD:16746 CPEB4 - cytoplasmic polyadenylation element binding protein 4 protein-coding 13-PTNLD9-TUMOR_peak_1165 chr1 37294879 37294977 + 6.21256 NA intron (NM_000831, intron 10 of 15) MIR3|SINE|MIR 204916 NM_000831 2899 Hs.128848 NM_000831 HPRD:00691 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate receptor, ionotropic, kainate 3 protein-coding 13-PTNLD9-TUMOR_peak_37578 chr4 1422001 1422095 + 6.21256 NA Intergenic Intergenic -21818 NM_001290079 54729 Hs.526396 NM_001290079 NKX1-1 HSPX153|NKX-1.1|SAX2 NK1 homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_44896 chr6 38556863 38557050 + 6.21256 NA intron (NM_001099272, intron 4 of 10) intron (NM_001099272, intron 4 of 10) 6887 NM_001172418 114781 Hs.603858 NM_052893 HPRD:12543 BTBD9 dJ322I12.1 BTB (POZ) domain containing 9 protein-coding 13-PTNLD9-TUMOR_peak_40585 chr5 34609563 34609671 + 6.21256 NA Intergenic Intergenic -46816 NM_015577 26064 Hs.431400 NM_015577 HPRD:09416 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 13-PTNLD9-TUMOR_peak_28246 chr2 120452837 120453002 + 6.21256 NA Intergenic L2c|LINE|L2 16176 NM_001105199 80775 Hs.439991 NM_030577 HPRD:14409 TMEM177 - transmembrane protein 177 protein-coding 13-PTNLD9-TUMOR_peak_26367 chr2 26800819 26800924 + 6.21256 NA intron (NM_001105519, intron 3 of 3) intron (NM_001105519, intron 3 of 3) 15390 NM_001105519 339778 Hs.407083 NM_001105519 ENSG00000173557 C2orf70 - chromosome 2 open reading frame 70 protein-coding 13-PTNLD9-TUMOR_peak_42087 chr5 133428739 133428881 + 6.21256 NA Intergenic Intergenic -21592 NM_003202 6932 Hs.573153 NM_003202 HPRD:01797 TCF7 TCF-1 transcription factor 7 (T-cell specific, HMG-box) protein-coding 13-PTNLD9-TUMOR_peak_50075 chr8 10924558 10924730 + 6.21256 NA intron (NM_173683, intron 1 of 2) intron (NM_173683, intron 1 of 2) -31832 NR_030328 693183 NR_030328 MIR598 MIRN598|hsa-mir-598 microRNA 598 ncRNA 13-PTNLD9-TUMOR_peak_515 chr1 16415688 16415823 + 6.21256 NA Intergenic Intergenic -15628 NM_182623 348487 Hs.126825 NM_182623 HPRD:08779 FAM131C C1orf117 family with sequence similarity 131, member C protein-coding 13-PTNLD9-TUMOR_peak_45103 chr6 43692906 43693031 + 6.21256 NA Intergenic Intergenic -37419 NM_018135 55168 Hs.520149 NM_018135 HPRD:14780 MRPS18A HumanS18b|MRP-S18-3|MRPS18-3|S18bmt mitochondrial ribosomal protein S18A protein-coding 13-PTNLD9-TUMOR_peak_35283 chr3 108048465 108048638 + 6.21256 NA intron (NM_001282557, intron 2 of 9) intron (NM_001282557, intron 2 of 9) 17919 NM_001282557 11148 Hs.252351 NM_007072 HPRD:05082 HHLA2 B7H7 HERV-H LTR-associating 2 protein-coding 13-PTNLD9-TUMOR_peak_14352 chr12 133038276 133038370 + 6.21256 NA Intergenic Intergenic -28834 NM_001142641 57666 Hs.411138 NM_001142641 ENSG00000112787 FBRSL1 - fibrosin-like 1 protein-coding 13-PTNLD9-TUMOR_peak_18567 chr16 14379149 14379469 + 6.21057 NA Intergenic Intergenic -18515 NR_030177 574455 NR_030177 miRBase:MI0003137 MIR193B MIRN193B microRNA 193b ncRNA 13-PTNLD9-TUMOR_peak_37650 chr4 3285769 3285863 + 6.21057 NA Intergenic Intergenic -30058 NM_198229 6002 Hs.527061 NM_002926 HPRD:03943 RGS12 - regulator of G-protein signaling 12 protein-coding 13-PTNLD9-TUMOR_peak_48757 chr7 106300365 106300485 + 6.21057 NA 3' UTR (NM_175884, exon 1 of 1) 3' UTR (NM_175884, exon 1 of 1) 1209 NM_175884 168455 Hs.29692 NM_175884 HPRD:08202 CCDC71L C7orf74 coiled-coil domain containing 71-like protein-coding 13-PTNLD9-TUMOR_peak_12808 chr12 52545798 52546002 + 6.20960 NA Intergenic Intergenic 39884 NM_182507 144501 Hs.140978 NM_182507 HPRD:14068 KRT80 KB20 keratin 80 protein-coding 13-PTNLD9-TUMOR_peak_47014 chr7 21153739 21153843 + 6.20942 NA Intergenic Intergenic 286874 NR_026673 222901 Hs.722187 NR_026673 ENSG00000219451 RPL23P8 RPL23_4_790 ribosomal protein L23 pseudogene 8 pseudo 13-PTNLD9-TUMOR_peak_7511 chr10 64564216 64564310 + 6.20942 NA promoter-TSS (NM_032804) promoter-TSS (NM_032804) -253 NM_032804 84890 Hs.99821 NM_032804 HPRD:12566 ADO C10orf22 2-aminoethanethiol (cysteamine) dioxygenase protein-coding 13-PTNLD9-TUMOR_peak_37012 chr3 185048592 185048750 + 6.20942 NA intron (NM_001242317, intron 2 of 12) L2a|LINE|L2 -32165 NM_004721 9175 Hs.591306 NM_004721 HPRD:05372 MAP3K13 LZK|MEKK13|MLK mitogen-activated protein kinase kinase kinase 13 protein-coding 13-PTNLD9-TUMOR_peak_27500 chr2 87546151 87546262 + 6.20942 NA Intergenic MIR3|SINE|MIR -208768 NR_024204 112597 Hs.652166 NM_052871 HPRD:14654 LINC00152 C2orf59|NCRNA00152 long intergenic non-protein coding RNA 152 ncRNA 13-PTNLD9-TUMOR_peak_42814 chr5 158634875 158635262 + 6.20942 NA promoter-TSS (NM_001199381) promoter-TSS (NM_001199381) 72 NM_001199381 153830 Hs.349306 NM_144726 HPRD:08113 RNF145 - ring finger protein 145 protein-coding 13-PTNLD9-TUMOR_peak_31810 chr20 62190784 62190940 + 6.20942 NA intron (NM_033405, intron 13 of 13) (GGGTG)n|Simple_repeat|Simple_repeat 6489 NM_024059 79025 Hs.197755 NM_024059 HPRD:14682 C20orf195 - chromosome 20 open reading frame 195 protein-coding 13-PTNLD9-TUMOR_peak_49716 chr7 152225005 152225125 + 6.20942 NA Intergenic Intergenic 63856 NR_027387 100128822 Hs.647112 NR_027387 ENSG00000261455 LINC01003 - long intergenic non-protein coding RNA 1003 ncRNA 13-PTNLD9-TUMOR_peak_24108 chr19 13147590 13147803 + 6.20665 NA intron (NM_001271043, intron 2 of 10) intron (NM_001271043, intron 2 of 10) 12301 NM_001271043 4784 Hs.257970 NM_002501 HPRD:01234 NFIX MRSHSS|NF1A|SOTOS2 nuclear factor I/X (CCAAT-binding transcription factor) protein-coding 13-PTNLD9-TUMOR_peak_17615 chr15 72946887 72947026 + 6.20665 NA promoter-TSS (NM_018652) promoter-TSS (NM_018652) -82 NM_018652 55889 Hs.546408 NM_018652 GOLGA6B GOLGA|GOLGA6D golgin A6 family, member B protein-coding 13-PTNLD9-TUMOR_peak_47955 chr7 74152354 74152467 + 6.20457 NA exon (NM_001163636, exon 18 of 34) exon (NM_001163636, exon 18 of 34) -9154 NR_110044 101926943 Hs.654772 NR_110044 ENSG00000232729 LOC101926943 - uncharacterized LOC101926943 ncRNA 13-PTNLD9-TUMOR_peak_48329 chr7 93524476 93524570 + 6.20457 NA Intergenic Intergenic -4220 NM_001271003 7980 Hs.438231 NM_006528 HPRD:08962 TFPI2 PP5|REF1|TFPI-2 tissue factor pathway inhibitor 2 protein-coding 13-PTNLD9-TUMOR_peak_36210 chr3 141481794 141481903 + 6.20174 NA Intergenic L1PA2|LINE|L1 -15195 NM_139209 131890 Hs.680654 NM_139209 GRK7 GPRK7 G protein-coupled receptor kinase 7 protein-coding 13-PTNLD9-TUMOR_peak_24931 chr19 39569246 39569733 + 6.20174 NA Intergenic MIRb|SINE|MIR -5456 NM_001004318 390928 Hs.448934 NM_001004318 HPRD:13361 PAPL - iron/zinc purple acid phosphatase-like protein protein-coding 13-PTNLD9-TUMOR_peak_35285 chr3 108230497 108230591 + 6.20174 NA intron (NM_014981, intron 1 of 41) intron (NM_014981, intron 1 of 41) 17625 NM_014981 22989 Hs.731060 NM_014981 ENSG00000144821 MYH15 - myosin, heavy chain 15 protein-coding 13-PTNLD9-TUMOR_peak_35528 chr3 120626878 120627108 + 6.20174 NA promoter-TSS (NM_014980) promoter-TSS (NM_014980) -57 NM_014980 9515 Hs.477315 NM_014980 ENSG00000145087 STXBP5L LLGL4 syntaxin binding protein 5-like protein-coding 13-PTNLD9-TUMOR_peak_32172 chr21 34755456 34755673 + 6.20174 NA Intergenic MER81|DNA|hAT-Blackjack -19638 NM_005534 3460 Hs.634632 NM_005534 HPRD:00956 IFNGR2 AF-1|IFGR2|IFNGT1 interferon gamma receptor 2 (interferon gamma transducer 1) protein-coding 13-PTNLD9-TUMOR_peak_215 chr1 6685756 6686066 + 6.20174 NA intron (NM_001195752, intron 1 of 4) L2a|LINE|L2 701 NM_001195752 90326 Hs.689006 NM_138350 HPRD:18178 THAP3 - THAP domain containing, apoptosis associated protein 3 protein-coding 13-PTNLD9-TUMOR_peak_13311 chr12 70760685 70760997 + 6.20174 NA exon (NM_014505, exon 1 of 3) exon (NM_014505, exon 1 of 3) 779 NM_014505 27345 Hs.525529 NM_014505 HPRD:05564 KCNMB4 - potassium large conductance calcium-activated channel, subfamily M, beta member 4 protein-coding 13-PTNLD9-TUMOR_peak_6220 chr1 249238607 249238725 + 6.19884 NA Intergenic TAR1|Satellite|telo 38224 NM_170725 267002 Hs.602037 NM_170725 PGBD2 - piggyBac transposable element derived 2 protein-coding 13-PTNLD9-TUMOR_peak_20428 chr17 8090895 8091225 + 6.19023 NA TTS (NM_017622) TTS (NM_017622) 797 NR_039746 100616406 NR_039746 MIR4521 - microRNA 4521 ncRNA 13-PTNLD9-TUMOR_peak_1800 chr1 53528654 53528810 + 6.18923 NA intron (NM_001199082, intron 1 of 6) CpG 847 NM_001199081 127435 Hs.586141 NM_153703 HPRD:10557 PODN PCAN|SLRR5A podocan protein-coding 13-PTNLD9-TUMOR_peak_460 chr1 12664478 12664576 + 6.18923 NA intron (NM_004753, intron 1 of 5) intron (NM_004753, intron 1 of 5) 13210 NM_004753 9249 Hs.289347 NM_004753 HPRD:09915 DHRS3 DD83.1|RDH17|Rsdr1|SDR1|SDR16C1|retSDR1 dehydrogenase/reductase (SDR family) member 3 protein-coding 13-PTNLD9-TUMOR_peak_17908 chr15 86383937 86384066 + 6.18923 NA Intergenic CpG -45812 NM_022480 64410 Hs.498371 NM_022480 HPRD:07780 KLHL25 ENC-2|ENC2 kelch-like family member 25 protein-coding 13-PTNLD9-TUMOR_peak_23129 chr18 46188630 46188751 + 6.18923 NA intron (NM_014772, intron 3 of 11) intron (NM_014772, intron 3 of 11) -8281 NR_039897 100616366 NR_039897 MIR4743 - microRNA 4743 ncRNA 13-PTNLD9-TUMOR_peak_5538 chr1 223936164 223936276 + 6.18923 NA intron (NM_001748, intron 5 of 20) intron (NM_001748, intron 5 of 20) 36101 NM_001748 824 Hs.350899 NM_001748 HPRD:00254 CAPN2 CANP2|CANPL2|CANPml|mCANP calpain 2, (m/II) large subunit protein-coding 13-PTNLD9-TUMOR_peak_39417 chr4 140089172 140089361 + 6.18923 NA Intergenic MER65-int|LTR|ERV1 -28636 NM_201999 1998 Hs.634040 NM_006874 HPRD:16856 ELF2 EU32|NERF|NERF-1A|NERF-1B|NERF-1a,b|NERF-2 E74-like factor 2 (ets domain transcription factor) protein-coding 13-PTNLD9-TUMOR_peak_52410 chr8 144120329 144120450 + 6.18923 NA promoter-TSS (NM_173687) promoter-TSS (NM_173687) -290 NM_173687 286122 Hs.660382 NM_173687 HPRD:08781 C8orf31 - chromosome 8 open reading frame 31 protein-coding 13-PTNLD9-TUMOR_peak_21858 chr17 66050723 66050831 + 6.18923 NA Intergenic AmnSINE1|SINE|Deu 18929 NM_002266 3838 Hs.594238 NM_002266 HPRD:02818 KPNA2 IPOA1|QIP2|RCH1|SRP1alpha karyopherin alpha 2 (RAG cohort 1, importin alpha 1) protein-coding 13-PTNLD9-TUMOR_peak_47192 chr7 32133501 32133651 + 6.18923 NA intron (NM_001191058, intron 3 of 18) intron (NM_001191058, intron 3 of 18) -22528 NM_001191059 5137 Hs.728862 NM_005020 HPRD:04287 PDE1C Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C, calmodulin-dependent 70kDa protein-coding 13-PTNLD9-TUMOR_peak_11717 chr11 133797662 133797842 + 6.18923 NA intron (NM_001277285, intron 12 of 19) intron (NM_001277285, intron 12 of 19) -26117 NR_024344 283174 Hs.504370 NM_001001873 MIR4697HG LINC00947 MIR4697 host gene (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_47265 chr7 38422290 38422410 + 6.18923 NA TTS (NM_139316) TTS (NM_139316) 41172 NR_040085 100506776 Hs.173034 NR_040085 TRG-AS1 - T cell receptor gamma locus antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_6634 chr10 21571096 21571236 + 6.18923 NA Intergenic Intergenic 107935 NR_046284 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_15306 chr14 23292143 23292270 + 6.18662 NA Intergenic CpG -3186 NM_001126106 9056 Hs.513147 NM_003982 HPRD:04667 SLC7A7 LAT3|LPI|MOP-2|Y+LAT1|y+LAT-1 solute carrier family 7 (amino acid transporter light chain, y+L system), member 7 protein-coding 13-PTNLD9-TUMOR_peak_42159 chr5 134713996 134714219 + 6.18662 NA intron (NM_001040158, intron 2 of 8) intron (NM_001040158, intron 2 of 8) 20821 NM_138610 9555 Hs.420272 NM_004893 HPRD:13624 H2AFY H2A.y|H2A/y|H2AF12M|H2AFJ|MACROH2A1.1|mH2A1|macroH2A1.2 H2A histone family, member Y protein-coding 13-PTNLD9-TUMOR_peak_15244 chr14 20938104 20938248 + 6.18662 NA intron (NM_000270, intron 1 of 5) intron (NM_000270, intron 1 of 5) 638 NM_000270 4860 Hs.75514 NM_000270 PNP NP|PRO1837|PUNP purine nucleoside phosphorylase protein-coding 13-PTNLD9-TUMOR_peak_3331 chr1 145589222 145589452 + 6.18662 NA promoter-TSS (NM_001012758) promoter-TSS (NM_001012758) 98 NM_001012758 200035 Hs.585066 NM_001012758 NUDT17 - nudix (nucleoside diphosphate linked moiety X)-type motif 17 protein-coding 13-PTNLD9-TUMOR_peak_51519 chr8 104514043 104514166 + 6.18662 NA intron (NM_001100117, intron 1 of 23) intron (NM_001100117, intron 1 of 23) 1128 NM_001100117 9699 Hs.655271 NM_014677 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 13-PTNLD9-TUMOR_peak_8577 chr10 127589682 127589829 + 6.18662 NA intron (NM_145235, intron 1 of 10) L2c|LINE|L2 4647 NM_145235 92565 Hs.352591 NM_145235 HPRD:09945 FANK1 - fibronectin type III and ankyrin repeat domains 1 protein-coding 13-PTNLD9-TUMOR_peak_20300 chr17 4269586 4269954 + 6.18304 NA 5' UTR (NM_003342, exon 1 of 6) 5' UTR (NM_003342, exon 1 of 6) 199 NM_003342 7326 Hs.741319 NM_003342 HPRD:03340 UBE2G1 E217K|UBC7|UBE2G ubiquitin-conjugating enzyme E2G 1 protein-coding 13-PTNLD9-TUMOR_peak_19551 chr16 66961109 66961285 + 6.18304 NA Intergenic Intergenic -1758 NM_004165 6236 Hs.1027 NM_004165 HPRD:01536 RRAD RAD|RAD1|REM3 Ras-related associated with diabetes protein-coding 13-PTNLD9-TUMOR_peak_9729 chr11 47448692 47448796 + 6.18304 NA promoter-TSS (NM_002804) promoter-TSS (NM_002804) -720 NM_002804 5702 Hs.250758 NM_002804 HPRD:01733 PSMC3 TBP1 proteasome (prosome, macropain) 26S subunit, ATPase, 3 protein-coding 13-PTNLD9-TUMOR_peak_28442 chr2 131129941 131130036 + 6.18304 NA exon (NM_001142370, exon 9 of 11) exon (NM_001142370, exon 9 of 11) 16408 NM_001142370 26469 Hs.516390 NM_014369 HPRD:05961 PTPN18 BDP1|PTP-HSCF protein tyrosine phosphatase, non-receptor type 18 (brain-derived) protein-coding 13-PTNLD9-TUMOR_peak_54351 chr9 110474752 110474931 + 6.18304 NA Intergenic L2c|LINE|L2 -222794 NM_004235 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel-like factor 4 (gut) protein-coding 13-PTNLD9-TUMOR_peak_10483 chr11 70244099 70244616 + 6.18263 NA promoter-TSS (NM_001184740) promoter-TSS (NM_001184740) -255 NM_001184740 2017 Hs.596164 NM_005231 HPRD:01268 CTTN EMS1 cortactin protein-coding 13-PTNLD9-TUMOR_peak_51851 chr8 124934412 124934784 + 6.18194 NA intron (NM_001039112, intron 1 of 40) intron (NM_001039112, intron 1 of 40) 70371 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1-like family member 6 protein-coding 13-PTNLD9-TUMOR_peak_35541 chr3 121741031 121741195 + 6.17585 NA promoter-TSS (NM_001199800) promoter-TSS (NM_001199800) 14 NM_001199800 286676 Hs.98484 NM_175924 HPRD:13735 ILDR1 DFNB42|ILDR1alpha|ILDR1alpha'|ILDR1beta immunoglobulin-like domain containing receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_1602 chr1 46306468 46306681 + 6.17585 NA intron (NM_015112, intron 3 of 28) MER57C1|LTR|ERV1 37289 NM_015112 23139 Hs.319481 NM_015112 HPRD:11294 MAST2 MAST205|MTSSK microtubule associated serine/threonine kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_23026 chr18 42933597 42933709 + 6.17585 NA intron (NM_001242692, intron 1 of 20) intron (NM_001242692, intron 1 of 20) 140706 NM_001242692 8170 Hs.710927 NM_007163 HPRD:03366 SLC14A2 HUT2|UT-A2|UT2|UTA|UTR|hUT-A6 solute carrier family 14 (urea transporter), member 2 protein-coding 13-PTNLD9-TUMOR_peak_9376 chr11 27792271 27792377 + 6.17585 NA Intergenic Intergenic -48719 NM_170731 627 Hs.502182 NM_001709 HPRD:00214 BDNF ANON2|BULN2 brain-derived neurotrophic factor protein-coding 13-PTNLD9-TUMOR_peak_3700 chr1 153095457 153095556 + 6.17585 NA Intergenic L1PBa|LINE|L1 -9517 NM_001014450 6705 Hs.490252 NM_001014450 HPRD:18699 SPRR2F - small proline-rich protein 2F protein-coding 13-PTNLD9-TUMOR_peak_33699 chr3 9819889 9820033 + 6.17585 NA Intergenic Intergenic -8293 NM_003656 8536 Hs.434875 NM_003656 HPRD:05412 CAMK1 CAMKI calcium/calmodulin-dependent protein kinase I protein-coding 13-PTNLD9-TUMOR_peak_17745 chr15 79043191 79043607 + 6.17585 NA promoter-TSS (NR_036495) promoter-TSS (NR_036495) -980 NR_036495 646938 Hs.449783 NR_036495 ENSG00000238166 LOC646938 - TBC1 domain family, member 2B pseudogene pseudo 13-PTNLD9-TUMOR_peak_44909 chr6 39005640 39005734 + 6.17585 NA Intergenic Intergenic -10870 NM_002062 2740 Hs.389103 NM_002062 HPRD:00677 GLP1R - glucagon-like peptide 1 receptor protein-coding 13-PTNLD9-TUMOR_peak_43989 chr6 17815723 17815818 + 6.17585 NA intron (NM_001105568, intron 17 of 37) LTR13|LTR|ERVK -108705 NM_001278210 9972 Hs.601591 NM_005124 HPRD:04899 NUP153 HNUP153|N153 nucleoporin 153kDa protein-coding 13-PTNLD9-TUMOR_peak_33537 chr3 918030 918333 + 6.17585 NA Intergenic Intergenic -216161 NM_001289080 27255 Hs.387300 NM_014461 HPRD:06242 CNTN6 NB3 contactin 6 protein-coding 13-PTNLD9-TUMOR_peak_2422 chr1 90274019 90274273 + 6.17585 NA Intergenic Intergenic -12427 NM_001134479 55144 Hs.482087 NM_018103 HPRD:11287 LRRC8D LRRC5 leucine rich repeat containing 8 family, member D protein-coding 13-PTNLD9-TUMOR_peak_17641 chr15 74502714 74502840 + 6.17585 NA promoter-TSS (NM_001199040) promoter-TSS (NM_001199040) -731 NM_001199040 64220 Hs.24553 NM_022369 HPRD:18122 STRA6 MCOPCB8|MCOPS9 stimulated by retinoic acid 6 protein-coding 13-PTNLD9-TUMOR_peak_18507 chr16 11085658 11085883 + 6.17585 NA intron (NM_015226, intron 9 of 22) intron (NM_015226, intron 9 of 22) 47425 NM_001243403 23274 Hs.35490 NM_015226 HPRD:17185 CLEC16A Gop-1|KIAA0350 C-type lectin domain family 16, member A protein-coding 13-PTNLD9-TUMOR_peak_46919 chr7 15820018 15820235 + 6.17585 NA Intergenic (TTTTG)n|Simple_repeat|Simple_repeat 92123 NR_110094 101927524 Hs.386790 NR_110094 MEOX2-AS1 - MEOX2 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_22795 chr18 21574674 21574795 + 6.17585 NA intron (NR_110796, intron 5 of 5) intron (NR_110796, intron 5 of 5) 1997 NM_153211 125488 Hs.128576 NM_153211 HPRD:08745 TTC39C C18orf17|HsT2697 tetratricopeptide repeat domain 39C protein-coding 13-PTNLD9-TUMOR_peak_4807 chr1 188206890 188207185 + 6.17585 NA Intergenic MER65D|LTR|ERV1 1409005 NM_024420 5321 Hs.497200 NM_024420 HPRD:08986 PLA2G4A PLA2G4|cPLA2-alpha phospholipase A2, group IVA (cytosolic, calcium-dependent) protein-coding 13-PTNLD9-TUMOR_peak_31653 chr20 55581970 55582064 + 6.17585 NA Intergenic Intergenic -206735 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_50017 chr8 7744567 7744686 + 6.17585 NA Intergenic Intergenic 5900 NM_018661 55894 Hs.283082 NM_018661 DEFB103B BD-3|DEFB-3|DEFB103|DEFB3|HBD-3|HBD3|HBP-3|HBP3 defensin, beta 103B protein-coding 13-PTNLD9-TUMOR_peak_30858 chr20 33759578 33759877 + 6.17585 NA promoter-TSS (NM_006404) promoter-TSS (NM_006404) -13 NM_006404 10544 Hs.647450 NM_006404 HPRD:02801 PROCR CCCA|CCD41|EPCR protein C receptor, endothelial protein-coding 13-PTNLD9-TUMOR_peak_47024 chr7 21942094 21942202 + 6.17585 NA TTS (NM_001277115) TTS (NM_001277115) 43394 NM_018719 55536 Hs.744069 NM_018719 HPRD:11481 CDCA7L JPO2|R1|RAM2 cell division cycle associated 7-like protein-coding 13-PTNLD9-TUMOR_peak_54229 chr9 102583709 102583900 + 6.17437 NA promoter-TSS (NM_173200) promoter-TSS (NM_173200) -333 NM_173199 8013 Hs.279522 NM_006981 HPRD:02766 NR4A3 CHN|CSMF|MINOR|NOR1|TEC nuclear receptor subfamily 4, group A, member 3 protein-coding 13-PTNLD9-TUMOR_peak_26863 chr2 47499450 47499710 + 6.17296 NA intron (NR_110207, intron 1 of 2) CpG 72633 NR_110207 101927043 Hs.515976 NR_110207 ENSG00000234690 LOC101927043 - uncharacterized LOC101927043 ncRNA 13-PTNLD9-TUMOR_peak_17027 chr15 35946724 35946839 + 6.17296 NA intron (NR_038251, intron 1 of 2) intron (NR_038251, intron 1 of 2) -108377 NM_001141972 89978 Hs.107196 NM_080650 HPRD:14443 DPH6 ATPBD4 diphthamine biosynthesis 6 protein-coding 13-PTNLD9-TUMOR_peak_3974 chr1 156774461 156774638 + 6.17296 NA Intergenic Intergenic -10993 NM_001007792 4914 Hs.406293 NM_002529 HPRD:01869 NTRK1 MTC|TRK|TRK1|TRKA|Trk-A|p140-TrkA neurotrophic tyrosine kinase, receptor, type 1 protein-coding 13-PTNLD9-TUMOR_peak_928 chr1 31382981 31383082 + 6.17296 NA Intergenic AluY|SINE|Alu -1551 NM_014654 9672 Hs.158287 NM_014654 SDC3 SDCN|SYND3 syndecan 3 protein-coding 13-PTNLD9-TUMOR_peak_46719 chr7 2518201 2518392 + 6.17296 NA Intergenic Intergenic -2279 NM_001291784 402635 NM_001291784 GRIFIN - galectin-related inter-fiber protein protein-coding 13-PTNLD9-TUMOR_peak_7243 chr10 47242870 47243032 + 6.17296 NA intron (NR_024495, intron 1 of 8) intron (NR_024495, intron 1 of 8) 560 NR_024495 642826 Hs.463017 NR_024495 BMS1P6 BMS1LP2|BMS1LP6|BMS1P2|bA302K17.2 BMS1 pseudogene 6 pseudo 13-PTNLD9-TUMOR_peak_28609 chr2 139398999 139399118 + 6.17296 NA Intergenic L2a|LINE|L2 138753 NM_007226 11249 Hs.435019 NM_007226 NXPH2 NPH2 neurexophilin 2 protein-coding 13-PTNLD9-TUMOR_peak_49765 chr7 153830903 153831165 + 6.17296 NA intron (NM_001290253, intron 1 of 5) intron (NM_001290253, intron 1 of 5) 81531 NM_001290253 1804 Hs.490684 NM_001936 HPRD:00525 DPP6 DPPX|VF2 dipeptidyl-peptidase 6 protein-coding 13-PTNLD9-TUMOR_peak_30777 chr20 31297599 31297732 + 6.17296 NA intron (NM_001099339, intron 3 of 8) L2a|LINE|L2 34149 NM_001099339 149951 Hs.408427 NM_053041 HPRD:13085 COMMD7 C20orf92|dJ1085F17.3 COMM domain containing 7 protein-coding 13-PTNLD9-TUMOR_peak_34510 chr3 48700322 48700551 + 6.17065 NA promoter-TSS (NM_001407) promoter-TSS (NM_001407) -88 NM_001407 1951 Hs.631926 NM_001407 HPRD:09179 CELSR3 CDHF11|EGFL1|FMI1|HFMI1|MEGF2|RESDA1 cadherin, EGF LAG seven-pass G-type receptor 3 protein-coding 13-PTNLD9-TUMOR_peak_19121 chr16 33192731 33192869 + 6.16903 NA Intergenic Intergenic -12783 NR_110897 729355 Hs.592038 NM_001099687 ENSG00000261509 TP53TG3B - TP53 target 3B protein-coding 13-PTNLD9-TUMOR_peak_22029 chr17 73850543 73850680 + 6.16903 NA intron (NM_012478, intron 1 of 7) intron (NM_012478, intron 1 of 7) 890 NM_012478 23558 Hs.514489 NM_012478 HPRD:06097 WBP2 WBP-2 WW domain binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_46687 chr7 1572487 1572666 + 6.16903 NA intron (NM_002360, intron 1 of 2) intron (NM_002360, intron 1 of 2) 2208 NM_002360 7975 Hs.520612 NM_002360 HPRD:02561 MAFK NFE2U|P18 v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog K protein-coding 13-PTNLD9-TUMOR_peak_45667 chr6 87864670 87864780 + 6.16298 NA promoter-TSS (NM_015021) promoter-TSS (NM_015021) -544 NM_015021 23036 Hs.485892 NM_015021 ENSG00000188994 ZNF292 Nbla00365|ZFP292|ZN-16|Zn-15|bA393I2.3 zinc finger protein 292 protein-coding 13-PTNLD9-TUMOR_peak_13033 chr12 57505498 57505784 + 6.16298 NA promoter-TSS (NM_001178078) promoter-TSS (NM_001178078) -445 NM_001178078 6778 Hs.524518 NM_003153 HPRD:03302 STAT6 D12S1644|IL-4-STAT|STAT6B|STAT6C signal transducer and activator of transcription 6, interleukin-4 induced protein-coding 13-PTNLD9-TUMOR_peak_56677 chrX 153009268 153009473 + 6.16298 NA 3' UTR (NM_000033, exon 10 of 10) 3' UTR (NM_000033, exon 10 of 10) 19047 NM_000033 215 Hs.159546 NM_000033 HPRD:02300 ABCD1 ABC42|ALD|ALDP|AMN ATP-binding cassette, sub-family D (ALD), member 1 protein-coding 13-PTNLD9-TUMOR_peak_7197 chr10 45477023 45477246 + 6.16079 NA intron (NM_032023, intron 3 of 10) intron (NM_032023, intron 3 of 10) -2804 NM_007021 11067 Hs.93675 NM_007021 HPRD:12558 C10orf10 DEPP|FIG|Fseg chromosome 10 open reading frame 10 protein-coding 13-PTNLD9-TUMOR_peak_34262 chr3 37285613 37285758 + 6.15714 NA intron (NM_002078, intron 1 of 23) intron (NM_002078, intron 1 of 23) 1003 NM_001172713 2803 Hs.344151 NM_002078 HPRD:03941 GOLGA4 GCP2|GOLG|MU-RMS-40.18|p230 golgin A4 protein-coding 13-PTNLD9-TUMOR_peak_27524 chr2 87978486 87978701 + 6.15714 NA Intergenic Intergenic 49314 NR_039636 100616341 NR_039636 miRBase:MI0016777 MIR4435-2 - microRNA 4435-2 ncRNA 13-PTNLD9-TUMOR_peak_1065 chr1 35228213 35228309 + 6.15714 NA 3' UTR (NM_153212, exon 2 of 2) 3' UTR (NM_153212, exon 2 of 2) 2919 NM_153212 127534 Hs.351203 NM_153212 HPRD:05666 GJB4 CX30.3|EKV gap junction protein, beta 4, 30.3kDa protein-coding 13-PTNLD9-TUMOR_peak_54344 chr9 110390212 110390361 + 6.15714 NA Intergenic Intergenic -138239 NM_004235 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel-like factor 4 (gut) protein-coding 13-PTNLD9-TUMOR_peak_17010 chr15 34658527 34658651 + 6.15714 NA intron (NM_153613, intron 1 of 13) intron (NM_153613, intron 1 of 13) 806 NM_153613 254531 Hs.352614 NM_153613 HPRD:08315 LPCAT4 AGPAT7|AYTL3|LPAAT-eta|LPEAT2 lysophosphatidylcholine acyltransferase 4 protein-coding 13-PTNLD9-TUMOR_peak_9293 chr11 20049029 20049125 + 6.15714 NA intron (NM_001111019, intron 2 of 27) intron (NM_001111019, intron 2 of 27) 4975 NM_001111019 89797 Hs.64341 NM_145117 HPRD:07385 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 13-PTNLD9-TUMOR_peak_49756 chr7 153532358 153532478 + 6.15714 NA Intergenic Intergenic -51764 NM_001039350 1804 Hs.490684 NM_001936 HPRD:00525 DPP6 DPPX|VF2 dipeptidyl-peptidase 6 protein-coding 13-PTNLD9-TUMOR_peak_39476 chr4 141778446 141778622 + 6.15714 NA Intergenic Intergenic -101063 NM_015130 23158 Hs.480819 NM_015130 HPRD:11115 TBC1D9 MDR1 TBC1 domain family, member 9 (with GRAM domain) protein-coding 13-PTNLD9-TUMOR_peak_37691 chr4 3928885 3929119 + 6.15714 NA Intergenic Intergenic 28146 NR_024253 348926 Hs.591720 NR_024253 FAM86EP - family with sequence similarity 86, member A pseudogene pseudo 13-PTNLD9-TUMOR_peak_26610 chr2 38082753 38082866 + 6.15714 NA intron (NR_110012, intron 2 of 3) intron (NR_110012, intron 2 of 3) 20197 NR_110012 101929559 Hs.468200 NR_110011 ENSG00000237803 LINC00211 NCRNA00211 long intergenic non-protein coding RNA 211 ncRNA 13-PTNLD9-TUMOR_peak_26996 chr2 60310846 60311000 + 6.15714 NA Intergenic L1PA2|LINE|L1 303657 NR_039631 100616473 NR_039631 miRBase:MI0016772 MIR4432 - microRNA 4432 ncRNA 13-PTNLD9-TUMOR_peak_54853 chr9 131185780 131185950 + 6.15714 NA intron (NM_016174, intron 3 of 12) AluSq2|SINE|Alu 3106 NM_016174 51148 Hs.495230 NM_016174 HPRD:16705 CERCAM CEECAM1|GLT25D3 cerebral endothelial cell adhesion molecule protein-coding 13-PTNLD9-TUMOR_peak_37390 chr3 195562135 195562304 + 6.15714 NA Intergenic Intergenic -23375 NM_018406 4585 Hs.369646 NM_004532 HPRD:11829 MUC4 ASGP|HSA276359|MUC-4 mucin 4, cell surface associated protein-coding 13-PTNLD9-TUMOR_peak_24298 chr19 17032086 17032260 + 6.15714 NA intron (NM_015692, intron 27 of 41) intron (NM_015692, intron 27 of 41) 32347 NM_003950 9002 Hs.137574 NM_003950 F2RL3 PAR4 coagulation factor II (thrombin) receptor-like 3 protein-coding 13-PTNLD9-TUMOR_peak_47475 chr7 50518029 50518172 + 6.15714 NA promoter-TSS (NM_001287493) promoter-TSS (NM_001287493) -12 NM_001287495 63979 Hs.137516 NM_022116 HPRD:10958 FIGNL1 - fidgetin-like 1 protein-coding 13-PTNLD9-TUMOR_peak_51135 chr8 71522619 71522837 + 6.15714 NA intron (NR_038881, intron 1 of 3) L2c|LINE|L2 1916 NR_038881 286190 Hs.662204 NR_038881 ENSG00000246366 LOC286190 - uncharacterized LOC286190 ncRNA 13-PTNLD9-TUMOR_peak_3229 chr1 144310901 144311415 + 6.15709 NA intron (NR_111953, intron 2 of 3) intron (NR_111953, intron 2 of 3) 29601 NR_109754 728855 Hs.456578 NR_024510 ENSG00000235398 LINC00623 CH17-118O6.2 long intergenic non-protein coding RNA 623 ncRNA 13-PTNLD9-TUMOR_peak_22140 chr17 76138068 76138417 + 6.15038 NA 3' UTR (NM_152468, exon 16 of 16) 3' UTR (NM_152468, exon 16 of 16) -4192 NM_001163075 100141515 Hs.633034 NM_001163075 ENSG00000187997 C17orf99 - chromosome 17 open reading frame 99 protein-coding 13-PTNLD9-TUMOR_peak_19089 chr16 32118433 32118527 + 6.15022 NA Intergenic Intergenic 80954 NR_109773 100289574 Hs.531536 NR_109773 ENSG00000230267 HERC2P4 D16F37S5 hect domain and RLD 2 pseudogene 4 pseudo 13-PTNLD9-TUMOR_peak_15826 chr14 55368927 55369346 + 6.14397 NA exon (NM_000161, exon 1 of 6) exon (NM_000161, exon 1 of 6) 406 NM_001024070 2643 Hs.86724 NM_000161 HPRD:02573 GCH1 DYT14|DYT5|DYT5a|GCH|GTP-CH-1|GTPCH1|HPABH4B GTP cyclohydrolase 1 protein-coding 13-PTNLD9-TUMOR_peak_19593 chr16 67555503 67555620 + 6.14397 NA intron (NR_104656, intron 1 of 1) intron (NR_104656, intron 1 of 1) 7087 NR_104656 100505942 Hs.121233 NR_104656 LOC100505942 - uncharacterized LOC100505942 ncRNA 13-PTNLD9-TUMOR_peak_11223 chr11 112160938 112161043 + 6.14397 NA Intergenic CpG -29407 NM_001145024 349633 Hs.632097 NM_001145024 ENSG00000188771 PLET1 C11orf34 placenta expressed transcript 1 protein-coding 13-PTNLD9-TUMOR_peak_27273 chr2 73441233 73441665 + 6.14397 NA promoter-TSS (NM_006062) promoter-TSS (NM_006062) 83 NM_006062 10322 Hs.631882 NM_006062 HPRD:18080 SMYD5 NN8-4AG|RAI15|RRG1|ZMYND23 SMYD family member 5 protein-coding 13-PTNLD9-TUMOR_peak_48462 chr7 99214174 99214333 + 6.14397 NA promoter-TSS (NM_145115) promoter-TSS (NM_145115) -318 NM_145115 221785 Hs.446297 NM_145115 HPRD:15807 ZSCAN25 ZNF498 zinc finger and SCAN domain containing 25 protein-coding 13-PTNLD9-TUMOR_peak_13171 chr12 65204707 65204839 + 6.14397 NA Intergenic Intergenic -13579 NM_015279 23329 Hs.192492 NM_015279 ENSG00000111490 TBC1D30 - TBC1 domain family, member 30 protein-coding 13-PTNLD9-TUMOR_peak_22590 chr18 10564013 10564148 + 6.14397 NA Intergenic Intergenic 38207 NM_003826 8774 Hs.464622 NM_003826 HPRD:04448 NAPG GAMMASNAP N-ethylmaleimide-sensitive factor attachment protein, gamma protein-coding 13-PTNLD9-TUMOR_peak_2870 chr1 112901527 112901705 + 6.14397 NA Intergenic Intergenic -37184 NM_018704 55917 Hs.744100 NM_018704 HPRD:10906 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 13-PTNLD9-TUMOR_peak_36789 chr3 175784198 175784347 + 6.13942 NA Intergenic HERVH-int|LTR|ERV1 -290151 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_54565 chr9 117976112 117976261 + 6.13942 NA intron (NM_017418, intron 1 of 7) intron (NM_017418, intron 1 of 7) 72089 NM_017418 50514 Hs.148841 NM_017418 HPRD:16068 DEC1 CTS9 deleted in esophageal cancer 1 protein-coding 13-PTNLD9-TUMOR_peak_56611 chrX 149940784 149940881 + 6.13942 NA intron (NM_001242614, intron 9 of 11) intron (NM_001242614, intron 9 of 11) 78963 NM_003828 8776 Hs.347187 NM_003828 HPRD:02163 MTMR1 - myotubularin related protein 1 protein-coding 13-PTNLD9-TUMOR_peak_35691 chr3 125461860 125461977 + 6.13942 NA Intergenic HERVE-int|LTR|ERV1 47477 NR_031687 100302204 NR_031687 miRBase:MI0006421 MIR548I1 MIR548I-1|MIRN548I1|hsa-mir-548i-1 microRNA 548i-1 ncRNA 13-PTNLD9-TUMOR_peak_48316 chr7 92439173 92439267 + 6.13942 NA intron (NM_001259, intron 2 of 7) intron (NM_001259, intron 2 of 7) 24011 NM_001259 1021 Hs.119882 NM_001259 HPRD:04533 CDK6 PLSTIRE cyclin-dependent kinase 6 protein-coding 13-PTNLD9-TUMOR_peak_27343 chr2 76060709 76060815 + 6.13942 NA Intergenic Intergenic -122651 NM_001201335 6936 Hs.303808 NM_003203 HPRD:01791 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 13-PTNLD9-TUMOR_peak_4433 chr1 173218674 173218768 + 6.13942 NA intron (NR_037845, intron 2 of 2) intron (NR_037845, intron 2 of 2) -42269 NM_003326 7292 Hs.181097 NM_003326 HPRD:04668 TNFSF4 CD134L|CD252|GP34|OX-40L|OX4OL|TXGP1 tumor necrosis factor (ligand) superfamily, member 4 protein-coding 13-PTNLD9-TUMOR_peak_52311 chr8 141403980 141404079 + 6.13942 NA intron (NM_031466, intron 7 of 22) intron (NM_031466, intron 7 of 22) 63832 NM_001160372 83696 Hs.654911 NM_031466 HPRD:18136 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|TRS120 trafficking protein particle complex 9 protein-coding 13-PTNLD9-TUMOR_peak_48417 chr7 97924237 97924370 + 6.13942 NA intron (NM_018842, intron 12 of 13) intron (NM_018842, intron 12 of 13) 13324 NM_001159491 25798 Hs.567438 NM_015379 HPRD:16562 BRI3 I3 brain protein I3 protein-coding 13-PTNLD9-TUMOR_peak_26236 chr2 19015718 19015857 + 6.13942 NA Intergenic Intergenic -244941 NM_001199088 93034 Hs.744358 NM_033253 HPRD:11405 NT5C1B AIRP|CN-IB|CN1B 5'-nucleotidase, cytosolic IB protein-coding 13-PTNLD9-TUMOR_peak_17521 chr15 68785230 68785408 + 6.13942 NA Intergenic Intergenic -60827 NM_001004439 22801 Hs.436416 NM_012211 HPRD:05310 ITGA11 HsT18964 integrin, alpha 11 protein-coding 13-PTNLD9-TUMOR_peak_2968 chr1 116012817 116013010 + 6.13942 NA Intergenic Intergenic -132056 NM_002506 4803 Hs.2561 NM_002506 HPRD:08874 NGF Beta-NGF|HSAN5|NGFB nerve growth factor (beta polypeptide) protein-coding 13-PTNLD9-TUMOR_peak_4787 chr1 186587672 186587791 + 6.13942 NA Intergenic Intergenic 61828 NM_000963 5743 Hs.196384 NM_000963 HPRD:02599 PTGS2 COX-2|COX2|GRIPGHS|PGG/HS|PGHS-2|PHS-2|hCox-2 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase) protein-coding 13-PTNLD9-TUMOR_peak_36928 chr3 183024886 183024981 + 6.13942 NA intron (NM_015078, intron 10 of 29) intron (NM_015078, intron 10 of 29) 53901 NM_032047 84002 Hs.718506 NM_032047 HPRD:12511 B3GNT5 B3GN-T5|beta3Gn-T5 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 protein-coding 13-PTNLD9-TUMOR_peak_21589 chr17 55951957 55952066 + 6.13942 NA intron (NM_001292025, intron 3 of 10) intron (NM_001292025, intron 3 of 10) -24578 NM_016070 51649 Hs.5836 NM_016070 MRPS23 HSPC329|MRP-S23 mitochondrial ribosomal protein S23 protein-coding 13-PTNLD9-TUMOR_peak_51225 chr8 86019344 86019595 + 6.13942 NA 5' UTR (NM_033402, exon 1 of 19) 5' UTR (NM_033402, exon 1 of 19) 146 NM_033402 85444 Hs.193115 NM_033402 HPRD:11160 LRRCC1 CLERC|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 13-PTNLD9-TUMOR_peak_49389 chr7 140353349 140353443 + 6.13942 NA Intergenic Intergenic -19557 NM_052853 90956 Hs.744886 NM_052853 HPRD:10631 ADCK2 AARF aarF domain containing kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_20953 chr17 36886460 36886561 + 6.13942 NA promoter-TSS (NM_001136498) promoter-TSS (NM_001136498) 0 NM_001136498 284106 Hs.713595 NM_001136498 CISD3 Miner2 CDGSH iron sulfur domain 3 protein-coding 13-PTNLD9-TUMOR_peak_9292 chr11 20032938 20033093 + 6.13942 NA intron (NM_182964, intron 11 of 37) MIR|SINE|MIR -11087 NM_001111019 89797 Hs.64341 NM_145117 HPRD:07385 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 13-PTNLD9-TUMOR_peak_46903 chr7 12443333 12443427 + 6.13942 NA 5' UTR (NM_001135924, exon 1 of 29) 5' UTR (NM_001135924, exon 1 of 29) 472 NM_001135924 221806 Hs.669526 NM_001135924 ENSG00000146530 VWDE - von Willebrand factor D and EGF domains protein-coding 13-PTNLD9-TUMOR_peak_46955 chr7 17719709 17719993 + 6.13942 NA Intergenic Intergenic -121318 NR_110013 101927630 Hs.583400 NR_110013 LOC101927630 - uncharacterized LOC101927630 ncRNA 13-PTNLD9-TUMOR_peak_7464 chr10 61661399 61661495 + 6.13942 NA intron (NM_005436, intron 1 of 8) intron (NM_005436, intron 1 of 8) 4967 NM_005436 8030 Hs.591360 NM_005436 HPRD:09064 CCDC6 D10S170|H4|PTC|TPC|TST1 coiled-coil domain containing 6 protein-coding 13-PTNLD9-TUMOR_peak_596 chr1 20084927 20085106 + 6.13942 NA intron (NM_181719, intron 6 of 15) intron (NM_181719, intron 6 of 15) 41394 NM_181719 255104 Hs.656313 NM_181719 HPRD:14140 TMCO4 - transmembrane and coiled-coil domains 4 protein-coding 13-PTNLD9-TUMOR_peak_35096 chr3 89409505 89409599 + 6.13942 NA intron (NM_182644, intron 5 of 6) intron (NM_182644, intron 5 of 6) 252878 NM_182644 2042 Hs.123642 NM_005233 HPRD:01555 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 13-PTNLD9-TUMOR_peak_42300 chr5 139487613 139487707 + 6.13942 NA promoter-TSS (NR_102741) promoter-TSS (NR_102741) -63 NR_102740 100505636 Hs.438871 NR_102739 ENSG00000245146 LINC01024 - long intergenic non-protein coding RNA 1024 ncRNA 13-PTNLD9-TUMOR_peak_53481 chr9 69261962 69262100 + 6.13679 NA intron (NM_001085457, intron 1 of 14) MIRc|SINE|MIR 562 NM_001085457 644019 Hs.597638 NM_001085457 ENSG00000204790 CBWD6 - COBW domain containing 6 protein-coding 13-PTNLD9-TUMOR_peak_25719 chr19 56154829 56155007 + 6.13456 NA promoter-TSS (NM_016535) promoter-TSS (NM_016535) -68 NM_016535 51545 Hs.20768 NM_016535 HPRD:15858 ZNF581 - zinc finger protein 581 protein-coding 13-PTNLD9-TUMOR_peak_35951 chr3 132378297 132378563 + 6.13162 NA promoter-TSS (NM_024818) promoter-TSS (NM_024818) 545 NM_032169 84129 Hs.441378 NM_032169 HPRD:13352 ACAD11 ACAD-11 acyl-CoA dehydrogenase family, member 11 protein-coding 13-PTNLD9-TUMOR_peak_41214 chr5 71363674 71363821 + 6.12542 NA Intergenic MIRb|SINE|MIR -39371 NM_005909 4131 Hs.335079 NM_005909 HPRD:01139 MAP1B FUTSCH|MAP5|PPP1R102 microtubule-associated protein 1B protein-coding 13-PTNLD9-TUMOR_peak_12851 chr12 53191944 53192066 + 6.12542 NA Intergenic Intergenic -2113 NM_057088 3850 Hs.680652 NM_057088 HPRD:01013 KRT3 CK3|K3 keratin 3 protein-coding 13-PTNLD9-TUMOR_peak_31027 chr20 38117920 38118138 + 6.12542 NA Intergenic Intergenic -264638 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LOC339568 - uncharacterized LOC339568 ncRNA 13-PTNLD9-TUMOR_peak_27330 chr2 75144944 75145143 + 6.12542 NA intron (NR_125792, intron 1 of 4) L2a|LINE|L2 8785 NR_125792 102724515 Hs.708649 NR_125792 LINC01291 - long intergenic non-protein coding RNA 1291 ncRNA 13-PTNLD9-TUMOR_peak_54376 chr9 111328125 111328259 + 6.12542 NA Intergenic Intergenic 290083 NM_006686 10880 Hs.534390 NM_006686 ACTL7B Tact1 actin-like 7B protein-coding 13-PTNLD9-TUMOR_peak_2545 chr1 94721161 94721283 + 6.12542 NA Intergenic Intergenic -17915 NM_004815 9411 Hs.483238 NM_004815 ARHGAP29 PARG1 Rho GTPase activating protein 29 protein-coding 13-PTNLD9-TUMOR_peak_5037 chr1 202549149 202549280 + 6.12542 NA intron (NM_032104, intron 12 of 12) intron (NM_032104, intron 12 of 12) 39972 NM_001197131 4660 Hs.444403 NM_002481 HPRD:04794 PPP1R12B MYPT2|PP1bp55 protein phosphatase 1, regulatory subunit 12B protein-coding 13-PTNLD9-TUMOR_peak_9271 chr11 19441499 19441647 + 6.12542 NA intron (NM_001111018, intron 1 of 37) intron (NM_001111018, intron 1 of 37) 69302 NM_001111018 89797 Hs.64341 NM_145117 HPRD:07385 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 13-PTNLD9-TUMOR_peak_35431 chr3 114103196 114103336 + 6.12542 NA promoter-TSS (NM_001164342) promoter-TSS (NM_001164342) -777 NM_001164342 26137 Hs.202577 NM_015642 HPRD:05822 ZBTB20 DPZF|HOF|ODA-8S|ZNF288 zinc finger and BTB domain containing 20 protein-coding 13-PTNLD9-TUMOR_peak_30616 chr20 23569869 23570152 + 6.12542 NA Intergenic L1PA2|LINE|L1 16600 NM_001008693 128822 Hs.698020 NM_001008693 HPRD:16768 CST9 CLM|CTES7A cystatin 9 (testatin) protein-coding 13-PTNLD9-TUMOR_peak_54938 chr9 133975858 133976115 + 6.12542 NA intron (NR_033701, intron 2 of 5) intron (NR_033701, intron 2 of 5) 4123 NM_001185096 83543 Hs.4944 NM_031426 HPRD:12967 AIF1L C9orf58|IBA2 allograft inflammatory factor 1-like protein-coding 13-PTNLD9-TUMOR_peak_3118 chr1 120865877 120866036 + 6.12199 NA Intergenic MIR3|SINE|MIR 26951 NM_001100910 653820 Hs.339665 NM_001100910 ENSG00000188610 FAM72B p17 family with sequence similarity 72, member B protein-coding 13-PTNLD9-TUMOR_peak_21042 chr17 39703949 39704086 + 6.11763 NA Intergenic Intergenic 6730 NR_038442 147093 Hs.680576 NR_038442 ENSG00000226629 LINC00974 - long intergenic non-protein coding RNA 974 ncRNA 13-PTNLD9-TUMOR_peak_10547 chr11 71949208 71949456 + 6.11763 NA TTS (NM_005169) TTS (NM_005169) 5888 NM_005169 401 Hs.731115 NM_005169 HPRD:04129 PHOX2A ARIX|CFEOM2|FEOM2|NCAM2|PMX2A paired-like homeobox 2a protein-coding 13-PTNLD9-TUMOR_peak_43831 chr6 13012075 13012245 + 6.11604 NA intron (NM_030948, intron 4 of 14) intron (NM_030948, intron 4 of 14) 283658 NM_001242698 100130357 Hs.657498 NM_001242698 LOC100130357 - uncharacterized LOC100130357 protein-coding 13-PTNLD9-TUMOR_peak_16627 chr14 103539591 103539687 + 6.11604 NA Intergenic Intergenic -15897 NM_006035 9578 Hs.654634 NM_006035 HPRD:08516 CDC42BPB MRCKB CDC42 binding protein kinase beta (DMPK-like) protein-coding 13-PTNLD9-TUMOR_peak_10610 chr11 73693759 73693862 + 6.11604 NA promoter-TSS (NM_003355) promoter-TSS (NM_003355) 79 NM_003355 7351 Hs.80658 NM_003355 UCP2 BMIQ4|SLC25A8|UCPH uncoupling protein 2 (mitochondrial, proton carrier) protein-coding 13-PTNLD9-TUMOR_peak_39637 chr4 152331189 152331344 + 6.11604 NA intron (NM_001109977, intron 1 of 13) intron (NM_001109977, intron 1 of 13) 868 NM_001109977 729830 Hs.633810 NM_001109977 ENSG00000164142 FAM160A1 - family with sequence similarity 160, member A1 protein-coding 13-PTNLD9-TUMOR_peak_42121 chr5 133890155 133890482 + 6.11582 NA intron (NM_001289984, intron 4 of 10) intron (NM_001289984, intron 4 of 10) 28520 NM_015288 23338 Hs.732155 NM_015288 HPRD:15124 JADE2 JADE-2|PHF15 jade family PHD finger 2 protein-coding 13-PTNLD9-TUMOR_peak_40624 chr5 36744881 36745004 + 6.11582 NA Intergenic Intergenic 131854 NR_046262 646719 Hs.355684 NR_046262 LOC646719 - uncharacterized LOC646719 ncRNA 13-PTNLD9-TUMOR_peak_33391 chr22 43407133 43407321 + 6.11582 NA intron (NM_001184970, intron 1 of 10) intron (NM_001184970, intron 1 of 10) 3957 NM_001184970 11252 Hs.162877 NM_007229 HPRD:05390 PACSIN2 SDPII protein kinase C and casein kinase substrate in neurons 2 protein-coding 13-PTNLD9-TUMOR_peak_5944 chr1 235123284 235123389 + 6.11582 NA Intergenic Intergenic 167916 NR_002956 677802 Hs.744743 NR_002956 SNORA14B ACA14b small nucleolar RNA, H/ACA box 14B snoRNA 13-PTNLD9-TUMOR_peak_18462 chr16 9541094 9541201 + 6.11582 NA Intergenic Intergenic 117101 NR_106988 102465753 NR_106988 MIR7641-2 B-ATF|hsa-mir-7641-2 microRNA 7641-2 ncRNA 13-PTNLD9-TUMOR_peak_23786 chr19 6720741 6720873 + 6.11582 NA promoter-TSS (NM_000064) promoter-TSS (NM_000064) -145 NM_000064 718 Hs.529053 NM_000064 HPRD:00400 C3 AHUS5|ARMD9|ASP|C3a|C3b|CPAMD1|HEL-S-62p complement component 3 protein-coding 13-PTNLD9-TUMOR_peak_35478 chr3 118753090 118753268 + 6.11582 NA intron (NM_152538, intron 3 of 8) CpG 497 NM_001015887 152404 Hs.112873 NM_152538 HPRD:16321 IGSF11 BT-IgSF|CT119|CXADRL1|Igsf13|VSIG3 immunoglobulin superfamily, member 11 protein-coding 13-PTNLD9-TUMOR_peak_49071 chr7 130128996 130129129 + 6.11311 NA non-coding (NR_004382, exon 2 of 2) non-coding (NR_004382, exon 2 of 2) 1951 NR_004382 317751 Hs.627349 NR_004382 MESTIT1 MEST-AS1|MEST-IT|MEST-IT1|NCRNA00040|PEG1-AS MEST intronic transcript 1, antisense RNA ncRNA 13-PTNLD9-TUMOR_peak_1423 chr1 43397699 43397974 + 6.10566 NA intron (NM_006516, intron 2 of 9) intron (NM_006516, intron 2 of 9) -26884 NR_033967 440584 Hs.260928 NR_033967 ENSG00000227533 SLC2A1-AS1 - SLC2A1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_23580 chr19 751735 751868 + 6.10566 NA intron (NM_173481, intron 1 of 4) intron (NM_173481, intron 1 of 4) 655 NM_173481 126353 Hs.439180 NM_173481 HPRD:12695 MISP C19orf21 mitotic spindle positioning protein-coding 13-PTNLD9-TUMOR_peak_48837 chr7 112090879 112091050 + 6.10566 NA intron (NM_001007245, intron 2 of 12) CpG 401 NR_120333 3475 Hs.7879 NM_001550 IFRD1 PC4|TIS7 interferon-related developmental regulator 1 protein-coding 13-PTNLD9-TUMOR_peak_43191 chr5 176797872 176798018 + 6.10566 NA exon (NM_006480, exon 11 of 15) exon (NM_006480, exon 11 of 15) 13101 NM_006480 10636 Hs.9347 NM_006480 HPRD:03944 RGS14 - regulator of G-protein signaling 14 protein-coding 13-PTNLD9-TUMOR_peak_13865 chr12 112037871 112038065 + 6.10566 NA promoter-TSS (NM_002973) promoter-TSS (NM_002973) -488 NM_002973 6311 Hs.76253 NM_002973 HPRD:03307 ATXN2 ASL13|ATX2|SCA2|TNRC13 ataxin 2 protein-coding 13-PTNLD9-TUMOR_peak_4477 chr1 175175952 175176092 + 6.10566 NA Intergenic Intergenic -13793 NM_001162894 9674 Hs.518138 NM_014656 HPRD:13776 KIAA0040 - KIAA0040 protein-coding 13-PTNLD9-TUMOR_peak_24190 chr19 14613569 14613778 + 6.10441 NA Intergenic AluSx1|SINE|Alu -6712 NM_202494 10755 Hs.655012 NM_005716 HPRD:05462 GIPC1 C19orf3|GIPC|GLUT1CBP|Hs.6454|IIP-1|NIP|RGS19IP1|SEMCAP|SYNECTIIN|SYNECTIN|TIP-2 GIPC PDZ domain containing family, member 1 protein-coding 13-PTNLD9-TUMOR_peak_27620 chr2 91757982 91758076 + 6.10441 NA Intergenic Intergenic 89946 NR_027238 654342 Hs.469287 NR_027238 ENSG00000143429 LOC654342 - lymphocyte-specific protein 1 pseudogene pseudo 13-PTNLD9-TUMOR_peak_123 chr1 2292554 2292730 + 6.10338 NA intron (NM_001301060, intron 8 of 10) L1MEc|LINE|L1 -8542 NR_024489 100129534 Hs.655313 NM_001127577 LOC100129534 - small nuclear ribonucleoprotein polypeptide N pseudogene pseudo 13-PTNLD9-TUMOR_peak_12111 chr12 10344609 10344734 + 6.10338 NA TTS (NM_153022) TTS (NM_153022) 13114 NM_153022 120939 Hs.226422 NM_153022 HPRD:08709 TMEM52B C12orf59 transmembrane protein 52B protein-coding 13-PTNLD9-TUMOR_peak_11155 chr11 109418502 109418596 + 6.10338 NA Intergenic Intergenic 125703 NM_207645 399947 Hs.172982 NM_207645 HPRD:14218 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 13-PTNLD9-TUMOR_peak_47055 chr7 23125778 23125887 + 6.10338 NA Intergenic X7A_LINE|LINE|CR1 19490 NR_046220 100775104 NR_046220 ENSG00000230658 KLHL7-AS1 PLATAK KLHL7 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_34249 chr3 36953999 36954247 + 6.10338 NA intron (NM_014831, intron 1 of 22) intron (NM_014831, intron 1 of 22) 32425 NM_014831 9881 Hs.170999 NM_014831 ENSG00000168016 TRANK1 LBA1 tetratricopeptide repeat and ankyrin repeat containing 1 protein-coding 13-PTNLD9-TUMOR_peak_763 chr1 26663167 26663330 + 6.10338 NA intron (NM_001039775, intron 11 of 19) CpG-697 17373 NM_001039775 55057 Hs.128738 NM_017977 AIM1L CRYBG2 absent in melanoma 1-like protein-coding 13-PTNLD9-TUMOR_peak_37445 chr3 196562064 196562249 + 6.10338 NA Intergenic Intergenic -32571 NM_152699 205564 Hs.240770 NM_152699 HPRD:10222 SENP5 - SUMO1/sentrin specific peptidase 5 protein-coding 13-PTNLD9-TUMOR_peak_14503 chr13 30070446 30070545 + 6.10338 NA intron (NM_001033602, intron 10 of 13) intron (NM_001033602, intron 10 of 13) -8608 NR_046378 100874107 Hs.577987 NR_046378 MTUS2-AS1 - MTUS2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_19305 chr16 50100216 50100328 + 6.10338 NA intron (NM_182922, intron 1 of 14) CpG 391 NM_182922 55027 Hs.733027 NM_017939 HPRD:07945 HEATR3 SYO1 HEAT repeat containing 3 protein-coding 13-PTNLD9-TUMOR_peak_8413 chr10 118648434 118648528 + 6.10338 NA intron (NM_018330, intron 14 of 14) intron (NM_018330, intron 14 of 14) 39458 NM_001242699 387712 Hs.693248 NM_001242699 ENSG00000188316 ENO4 C10orf134 enolase family member 4 protein-coding 13-PTNLD9-TUMOR_peak_23371 chr18 60302347 60302481 + 6.10338 NA Intergenic Intergenic -80258 NM_194449 23239 Hs.465337 NM_194449 HPRD:15145 PHLPP1 PHLPP|PLEKHE1|SCOP PH domain and leucine rich repeat protein phosphatase 1 protein-coding 13-PTNLD9-TUMOR_peak_38690 chr4 80010292 80010393 + 6.10338 NA intron (NR_038342, intron 3 of 5) intron (NR_038342, intron 3 of 5) 117440 NR_038342 100505875 Hs.480055 NR_038342 LINC01088 - long intergenic non-protein coding RNA 1088 ncRNA 13-PTNLD9-TUMOR_peak_56499 chrX 131623402 131623535 + 6.10338 NA intron (NM_001170704, intron 1 of 8) CpG 528 NM_001170704 55796 Hs.105134 NM_018388 HPRD:02329 MBNL3 CHCR|MBLX|MBLX39|MBXL muscleblind-like splicing regulator 3 protein-coding 13-PTNLD9-TUMOR_peak_29898 chr2 223288451 223288717 + 6.10338 NA promoter-TSS (NM_152386) promoter-TSS (NM_152386) -738 NM_152386 130367 Hs.591604 NM_152386 SGPP2 SPP2 sphingosine-1-phosphate phosphatase 2 protein-coding 13-PTNLD9-TUMOR_peak_28209 chr2 119532269 119532458 + 6.10338 NA Intergenic Intergenic 73396 NM_001426 2019 Hs.271977 NM_001426 HPRD:08835 EN1 - engrailed homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_5165 chr1 204667177 204667299 + 6.10338 NA Intergenic Intergenic -12641 NM_201630 10446 Hs.26312 NM_006338 HPRD:16109 LRRN2 FIGLER7|GAC1|LRANK1|LRRN5 leucine rich repeat neuronal 2 protein-coding 13-PTNLD9-TUMOR_peak_43490 chr6 2986184 2986369 + 6.10234 NA Intergenic Intergenic -1925 NR_026855 401232 Hs.720158 NM_207495 HPRD:16819 LINC01011 DKFZP686I15217 long intergenic non-protein coding RNA 1011 ncRNA 13-PTNLD9-TUMOR_peak_37336 chr3 194403454 194403604 + 6.09620 NA Intergenic Intergenic -3093 NM_153690 131583 Hs.435080 NM_153690 HPRD:13308 FAM43A - family with sequence similarity 43, member A protein-coding 13-PTNLD9-TUMOR_peak_18438 chr16 8964739 8964877 + 6.09620 NA Intergenic L1MB7|LINE|L1 -1939 NM_001278260 23589 Hs.632184 NM_014316 HPRD:08515 CARHSP1 CRHSP-24|CSDC1 calcium regulated heat stable protein 1, 24kDa protein-coding 13-PTNLD9-TUMOR_peak_3926 chr1 156251228 156251347 + 6.09438 NA intron (NM_015327, intron 1 of 21) intron (NM_015327, intron 1 of 21) 1333 NM_015327 23381 Hs.516837 NM_015327 HPRD:16869 SMG5 EST1B|LPTS-RP1|LPTSRP1|SMG-5 SMG5 nonsense mediated mRNA decay factor protein-coding 13-PTNLD9-TUMOR_peak_3390 chr1 147233188 147233305 + 6.09438 NA promoter-TSS (NM_181703) promoter-TSS (NM_181703) -532 NM_181703 2702 Hs.447968 NM_005266 HPRD:08699 GJA5 ATFB11|CX40 gap junction protein, alpha 5, 40kDa protein-coding 13-PTNLD9-TUMOR_peak_48661 chr7 102330395 102330489 + 6.09404 NA Intergenic CpG -18266 NM_032959 246721 Hs.610255 NM_032958 HPRD:17878 POLR2J2 HRPB11B|RPB11b1 polymerase (RNA) II (DNA directed) polypeptide J2 protein-coding 13-PTNLD9-TUMOR_peak_5375 chr1 213031460 213031678 + 6.09357 NA promoter-TSS (NM_014053) promoter-TSS (NM_014053) -28 NM_014053 28982 Hs.7055 NM_014053 HPRD:16451 FLVCR1 AXPC1|FLVCR|MFSD7B|PCA|PCARP feline leukemia virus subgroup C cellular receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_44434 chr6 30124020 30124293 + 6.09357 NA intron (NM_052828, intron 5 of 7).5 intron (NM_052828, intron 5 of 7).5 4555 NM_006778 10107 Hs.709483 NM_006778 HPRD:05752 TRIM10 HERF1|RFB30|RNF9 tripartite motif containing 10 protein-coding 13-PTNLD9-TUMOR_peak_1408 chr1 42692116 42692250 + 6.09357 NA intron (NM_014947, intron 5 of 12) AluSx|SINE|Alu -61788 NM_033553 2980 Hs.778 NM_033553 HPRD:00767 GUCA2A GCAP-I|GUCA2|STARA guanylate cyclase activator 2A (guanylin) protein-coding 13-PTNLD9-TUMOR_peak_9153 chr11 13961653 13961786 + 6.09357 NA Intergenic Intergenic -22465 NM_006108 10418 Hs.643864 NM_006108 SPON1 VSGP/F-spondin|f-spondin spondin 1, extracellular matrix protein protein-coding 13-PTNLD9-TUMOR_peak_10129 chr11 63767025 63767160 + 6.09357 NA intron (NM_014067, intron 6 of 10) CpG-4255 13767 NM_017670 55611 Hs.473788 NM_017670 OTUB1 OTB1|OTU1 OTU deubiquitinase, ubiquitin aldehyde binding 1 protein-coding 13-PTNLD9-TUMOR_peak_17430 chr15 64302988 64303282 + 6.09357 NA intron (NM_014326, intron 2 of 11) intron (NM_014326, intron 2 of 11) 35386 NM_014326 23604 Hs.237886 NM_014326 HPRD:09905 DAPK2 DRP-1|DRP1 death-associated protein kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_41966 chr5 127537140 127537235 + 6.09357 NA Intergenic Intergenic 117704 NR_046207 6558 Hs.162585 NM_001046 HPRD:06775 SLC12A2 BSC|BSC2|NKCC1|PPP1R141 solute carrier family 12 (sodium/potassium/chloride transporter), member 2 protein-coding 13-PTNLD9-TUMOR_peak_3580 chr1 150859577 150859866 + 6.09357 NA Intergenic Intergenic -10477 NM_001668 405 Hs.632446 NM_001668 HPRD:00524 ARNT HIF-1-beta|HIF-1beta|HIF1-beta|HIF1B|HIF1BETA|TANGO|bHLHe2 aryl hydrocarbon receptor nuclear translocator protein-coding 13-PTNLD9-TUMOR_peak_22504 chr18 6540059 6540176 + 6.09357 NA intron (NR_120518, intron 2 of 5) L2a|LINE|L2 28702 NR_120518 100130480 Hs.646267 NM_001243517 ENSG00000265944 LINC01387 C18orf64 long intergenic non-protein coding RNA 1387 ncRNA 13-PTNLD9-TUMOR_peak_34474 chr3 47844498 47844676 + 6.09357 NA non-coding (NR_075079, exon 1 of 4) non-coding (NR_075079, exon 1 of 4) 188 NM_014966 22907 Hs.517948 NM_014966 HPRD:13142 DHX30 DDX30|RETCOR DEAH (Asp-Glu-Ala-His) box helicase 30 protein-coding 13-PTNLD9-TUMOR_peak_39092 chr4 112258528 112258627 + 6.09357 NA Intergenic L1PA2|LINE|L1 -695298 NM_001204399 5308 Hs.643588 NM_000325 HPRD:03328 PITX2 ARP1|Brx1|IDG2|IGDS|IGDS2|IHG2|IRID2|Otlx2|PTX2|RGS|RIEG|RIEG1|RS paired-like homeodomain 2 protein-coding 13-PTNLD9-TUMOR_peak_48042 chr7 75967719 75967832 + 6.09357 NA intron (NM_012479, intron 1 of 1) MIRb|SINE|MIR 20567 NM_012479 7532 Hs.744840 NM_012479 HPRD:05639 YWHAG 14-3-3GAMMA|PPP1R170 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma protein-coding 13-PTNLD9-TUMOR_peak_10697 chr11 76534674 76534975 + 6.09357 NA Intergenic Intergenic -37093 NM_018367 55331 Hs.23862 NM_018367 ACER3 APHC|PHCA alkaline ceramidase 3 protein-coding 13-PTNLD9-TUMOR_peak_42386 chr5 141159378 141159504 + 6.09357 NA Intergenic Intergenic 86326 NM_001278615 5097 Hs.79769 NM_002587 HPRD:04692 PCDH1 PC42|PCDH42 protocadherin 1 protein-coding 13-PTNLD9-TUMOR_peak_53538 chr9 70857342 70857474 + 6.09285 NA intron (NM_001291821, intron 1 of 13) MIRc|SINE|MIR 547 NM_001291821 445571 Hs.645337 NM_201453 CBWD3 bA561O23.1 COBW domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_50989 chr8 56861025 56861119 + 6.08760 NA intron (NM_001111097, intron 4 of 12) intron (NM_001111097, intron 4 of 12) 68686 NM_002350 4067 Hs.491767 NM_002350 HPRD:01301 LYN JTK8|p53Lyn|p56Lyn LYN proto-oncogene, Src family tyrosine kinase protein-coding 13-PTNLD9-TUMOR_peak_13804 chr12 110323587 110323726 + 6.08760 NA Intergenic AluJr|SINE|Alu -5363 NM_016433 51228 Hs.381256 NM_016433 HPRD:16409 GLTP - glycolipid transfer protein protein-coding 13-PTNLD9-TUMOR_peak_39976 chr4 184751853 184751973 + 6.08760 NA Intergenic Intergenic -74596 NM_020225 56977 Hs.21958 NM_020225 HPRD:16823 STOX2 - storkhead box 2 protein-coding 13-PTNLD9-TUMOR_peak_40698 chr5 40755230 40755361 + 6.08760 NA intron (NM_012382, intron 1 of 4) intron (NM_012382, intron 1 of 4) 777 NM_012382 23548 Hs.348915 NM_012382 HPRD:17807 TTC33 OSRF tetratricopeptide repeat domain 33 protein-coding 13-PTNLD9-TUMOR_peak_16889 chr15 30027658 30027764 + 6.08760 NA intron (NM_001301025, intron 12 of 28) AluJb|SINE|Alu 86040 NM_001301026 7082 Hs.743990 NM_003257 HPRD:03002 TJP1 ZO-1 tight junction protein 1 protein-coding 13-PTNLD9-TUMOR_peak_3533 chr1 149967939 149968188 + 6.08760 NA intron (NM_020205, intron 1 of 11) intron (NM_020205, intron 1 of 11) 14623 NM_020205 56957 Hs.98322 NM_020205 OTUD7B CEZANNE|ZA20D1 OTU deubiquitinase 7B protein-coding 13-PTNLD9-TUMOR_peak_12892 chr12 53693406 53693524 + 6.08760 NA promoter-TSS (NM_021640) promoter-TSS (NM_021640) -5 NM_021640 60314 Hs.655988 NM_021640 HPRD:10705 C12orf10 Gamm1|MST024|MSTP024|MYG|MYG1 chromosome 12 open reading frame 10 protein-coding 13-PTNLD9-TUMOR_peak_18737 chr16 21566361 21566455 + 6.08760 NA Intergenic Intergenic -34643 NR_002594 387254 Hs.448808 NR_002594 SLC7A5P2 IMAA|MMAA solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_54675 chr9 124398796 124399078 + 6.08760 NA intron (NM_032552, intron 1 of 16) intron (NM_032552, intron 1 of 16) 69556 NM_032552 153090 Hs.522378 NM_032552 HPRD:09903 DAB2IP AF9Q34|AIP-1|AIP1|DIP1/2 DAB2 interacting protein protein-coding 13-PTNLD9-TUMOR_peak_46659 chr7 1019970 1020109 + 6.08760 NA Intergenic Intergenic -2796 NM_017781 54905 Hs.272795 NM_017781 HPRD:07901 CYP2W1 - cytochrome P450, family 2, subfamily W, polypeptide 1 protein-coding 13-PTNLD9-TUMOR_peak_15831 chr14 55518654 55518913 + 6.08760 NA intron (NM_144578, intron 1 of 3) CpG 421 NM_144578 93487 Hs.594338 NM_144578 HPRD:12647 MAPK1IP1L C14orf32|MISS|c14_5346 mitogen-activated protein kinase 1 interacting protein 1-like protein-coding 13-PTNLD9-TUMOR_peak_18095 chr15 101267703 101267862 + 6.08760 NA Intergenic Intergenic 125027 NM_198243 140460 Hs.31845 NM_024708 HPRD:10674 ASB7 - ankyrin repeat and SOCS box containing 7 protein-coding 13-PTNLD9-TUMOR_peak_33502 chr22 50324775 50324923 + 6.08760 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 12571 NM_001284317 79174 Hs.211282 NM_024324 HPRD:08455 CRELD2 - cysteine-rich with EGF-like domains 2 protein-coding 13-PTNLD9-TUMOR_peak_3237 chr1 144491130 144491644 + 6.08756 NA intron (NM_001278267, intron 52 of 130) intron (NM_001278267, intron 52 of 130) 121332 NR_003242 767846 Hs.657186 NR_003242 PFN1P2 C1orf152|COAS3 profilin 1 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_25432 chr19 50635098 50635294 + 6.08459 NA Intergenic AluYa5|SINE|Alu 1925 NR_024230 100170217 Hs.723095 NR_024230 SNAR-B2 - small ILF3/NF90-associated RNA B2 snRNA 13-PTNLD9-TUMOR_peak_9242 chr11 18548733 18548827 + 6.08035 NA promoter-TSS (NM_006292) promoter-TSS (NM_006292) -277 NM_006292 7251 Hs.523512 NM_006292 HPRD:03229 TSG101 TSG10|VPS23 tumor susceptibility 101 protein-coding 13-PTNLD9-TUMOR_peak_4749 chr1 184943637 184943768 + 6.08035 NA promoter-TSS (NM_052966) promoter-TSS (NM_052966) 16 NM_052966 116496 Hs.518662 NM_052966 HPRD:10725 FAM129A C1orf24|NIBAN family with sequence similarity 129, member A protein-coding 13-PTNLD9-TUMOR_peak_34628 chr3 51703383 51703519 + 6.08035 NA Intergenic Intergenic -1740 NR_024012 51368 Hs.517864 NM_015926 HPRD:15492 TEX264 ZSIG11 testis expressed 264 protein-coding 13-PTNLD9-TUMOR_peak_40179 chr5 1161427 1161527 + 6.08035 NA Intergenic Intergenic 17243 NR_109911 101928857 Hs.593732 NR_109911 ENSG00000249201 CTD-3080P12.3 - uncharacterized LOC101928857 ncRNA 13-PTNLD9-TUMOR_peak_55048 chr9 139777066 139777234 + 6.08035 NA Intergenic Intergenic -3815 NM_021138 7186 Hs.522506 NM_021138 HPRD:03538 TRAF2 MGC:45012|TRAP|TRAP3 TNF receptor-associated factor 2 protein-coding 13-PTNLD9-TUMOR_peak_4293 chr1 167046897 167046997 + 6.08035 NA intron (NM_005814, intron 1 of 6) intron (NM_005814, intron 1 of 6) 12921 NM_005814 10223 Hs.651244 NM_005814 HPRD:03704 GPA33 A33 glycoprotein A33 (transmembrane) protein-coding 13-PTNLD9-TUMOR_peak_19115 chr16 32876693 32876787 + 6.08035 NA Intergenic Intergenic 19723 NR_003083 386757 Hs.433146 NM_198857 HPRD:13479 SLC6A10P CT-2|CT2|SLC6A10|SLC6A10pA solute carrier family 6 (neurotransmitter transporter), member 10, pseudogene pseudo 13-PTNLD9-TUMOR_peak_52181 chr8 134586959 134587060 + 6.07719 NA Intergenic Intergenic -2826 NM_003033 6482 Hs.374257 NM_003033 HPRD:06219 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_37536 chr4 671598 671725 + 6.07594 NA promoter-TSS (NM_002477) promoter-TSS (NM_002477) -50 NM_002477 4636 Hs.410970 NM_002477 HPRD:01182 MYL5 - myosin, light chain 5, regulatory protein-coding 13-PTNLD9-TUMOR_peak_18837 chr16 25120955 25121063 + 6.07476 NA intron (NR_120306, intron 1 of 2) intron (NR_120306, intron 1 of 2) 1867 NR_120306 102723510 Hs.569596 NR_120306 LCMT1-AS1 - LCMT1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_23748 chr19 5686827 5686931 + 6.07476 NA intron (NM_198706, intron 4 of 7) CpG -3393 NM_033643 25873 Hs.408018 NM_015414 HPRD:10201 RPL36 L36 ribosomal protein L36 protein-coding 13-PTNLD9-TUMOR_peak_54398 chr9 112089659 112089799 + 6.07476 NA Intergenic Intergenic -6485 NM_018424 54566 Hs.591901 NM_018424 HPRD:09940 EPB41L4B CG1|EHM2 erythrocyte membrane protein band 4.1 like 4B protein-coding 13-PTNLD9-TUMOR_peak_24906 chr19 39140393 39140745 + 6.07476 NA intron (NM_004924, intron 1 of 20) intron (NM_004924, intron 1 of 20) 2302 NM_004924 81 Hs.270291 NM_004924 ACTN4 ACTININ-4|FSGS|FSGS1 actinin, alpha 4 protein-coding 13-PTNLD9-TUMOR_peak_4623 chr1 181056264 181056434 + 6.06960 NA Intergenic Intergenic -1289 NM_016545 51278 Hs.15725 NM_016545 HPRD:06210 IER5 SBBI48 immediate early response 5 protein-coding 13-PTNLD9-TUMOR_peak_49571 chr7 148845134 148845252 + 6.06928 NA intron (NM_170686, intron 1 of 5) CpG 633 NM_170686 57541 Hs.632032 NM_020781 HPRD:18336 ZNF398 P51|P71|ZER6 zinc finger protein 398 protein-coding 13-PTNLD9-TUMOR_peak_39636 chr4 152330342 152330619 + 6.06928 NA promoter-TSS (NM_001109977) promoter-TSS (NM_001109977) 82 NM_001109977 729830 Hs.633810 NM_001109977 ENSG00000164142 FAM160A1 - family with sequence similarity 160, member A1 protein-coding 13-PTNLD9-TUMOR_peak_4527 chr1 178063585 178063679 + 6.06928 NA promoter-TSS (NR_027982) promoter-TSS (NR_027982) -504 NR_027982 100302401 Hs.736117 NR_027982 ENSG00000224687 RASAL2-AS1 - RASAL2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_24385 chr19 18284797 18284957 + 6.06928 NA intron (NM_006332, intron 1 of 6) CpG 287 NM_006332 10437 Hs.14623 NM_006332 HPRD:05234 IFI30 GILT|IFI-30|IP30 interferon, gamma-inducible protein 30 protein-coding 13-PTNLD9-TUMOR_peak_44170 chr6 25174253 25174362 + 6.06928 NA Intergenic Intergenic -35687 NR_027626 8418 Hs.484918 NR_002174 CMAHP CMAH|CSAH cytidine monophospho-N-acetylneuraminic acid hydroxylase, pseudogene pseudo 13-PTNLD9-TUMOR_peak_36765 chr3 172575050 172575177 + 6.06733 NA Intergenic Intergenic 106638 NM_001258315 1894 Hs.518299 NM_018098 HPRD:11860 ECT2 ARHGEF31 epithelial cell transforming 2 protein-coding 13-PTNLD9-TUMOR_peak_14499 chr13 30013007 30013132 + 6.06733 NA intron (NM_015233, intron 1 of 8) intron (NM_015233, intron 1 of 8) 10292 NM_015233 23281 Hs.22287 NM_015233 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated tumor suppressor candidate 2 protein-coding 13-PTNLD9-TUMOR_peak_43004 chr5 171560407 171560577 + 6.06733 NA intron (NM_005990, intron 2 of 18) intron (NM_005990, intron 2 of 18) 54854 NM_005990 6793 Hs.744005 NM_005990 HPRD:06796 STK10 LOK|PRO2729 serine/threonine kinase 10 protein-coding 13-PTNLD9-TUMOR_peak_48356 chr7 95050416 95050629 + 6.06733 NA intron (NM_001018161, intron 2 of 8) intron (NM_001018161, intron 2 of 8) 13862 NM_000305 5445 Hs.744912 NM_000305 HPRD:03903 PON2 - paraoxonase 2 protein-coding 13-PTNLD9-TUMOR_peak_31020 chr20 37783957 37784138 + 6.06733 NA Intergenic Intergenic 69344 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LOC339568 - uncharacterized LOC339568 ncRNA 13-PTNLD9-TUMOR_peak_14504 chr13 30122999 30123168 + 6.06733 NA intron (NM_003045, intron 2 of 12) intron (NM_003045, intron 2 of 12) 46742 NM_003045 6541 Hs.14846 NM_003045 HPRD:00091 SLC7A1 ATRC1|CAT-1|ERR|HCAT1|REC1L solute carrier family 7 (cationic amino acid transporter, y+ system), member 1 protein-coding 13-PTNLD9-TUMOR_peak_26462 chr2 29286808 29286926 + 6.06733 NA 3' UTR (NM_001029883, exon 2 of 2) 3' UTR (NM_001029883, exon 2 of 2) 10260 NM_001029883 388939 Hs.354243 NM_001029883 ENSG00000179270 C2orf71 RP54 chromosome 2 open reading frame 71 protein-coding 13-PTNLD9-TUMOR_peak_9750 chr11 48008404 48008530 + 6.06733 NA intron (NM_002843, intron 1 of 24) intron (NM_002843, intron 1 of 24) 6357 NM_002843 5795 Hs.318547 NM_002843 HPRD:02955 PTPRJ CD148|DEP1|HPTPeta|R-PTP-ETA|SCC1 protein tyrosine phosphatase, receptor type, J protein-coding 13-PTNLD9-TUMOR_peak_56344 chrX 109473191 109473300 + 6.06733 NA intron (NM_001025580, intron 1 of 4) L1PA6|LINE|L1 -4957 NR_004379 692226 NR_004379 SNORD96B U96b small nucleolar RNA, C/D box 96B snoRNA 13-PTNLD9-TUMOR_peak_42441 chr5 142466774 142467003 + 6.06733 NA intron (NM_015071, intron 17 of 22) intron (NM_015071, intron 17 of 22) -218413 NR_046680 100874239 Hs.570896 NR_046680 ENSG00000226272 ARHGAP26-AS1 - ARHGAP26 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_36409 chr3 151261252 151261562 + 6.06733 NA Intergenic LTR18B|LTR|ERVL 22376 NR_049818 100847036 NR_049818 miRBase:MI0018165 MIR5186 - microRNA 5186 ncRNA 13-PTNLD9-TUMOR_peak_13070 chr12 58787096 58787200 + 6.06733 NA Intergenic Intergenic 388350 NR_120452 101927653 Hs.130744 NR_120452 LOC101927653 - uncharacterized LOC101927653 ncRNA 13-PTNLD9-TUMOR_peak_21898 chr17 70407410 70407504 + 6.06733 NA intron (NR_036488, intron 3 of 3) intron (NR_036488, intron 3 of 3) 181486 NR_036488 100499467 Hs.157726 NR_036488 LINC00673 LINC00511 long intergenic non-protein coding RNA 673 ncRNA 13-PTNLD9-TUMOR_peak_39575 chr4 148249428 148249522 + 6.06733 NA Intergenic Tigger3b|DNA|TcMar-Tigger -152594 NM_001256283 1909 Hs.183713 NM_001957 HPRD:00571 EDNRA ET-A|ETA|ETA-R|ETAR|ETRA|hET-AR endothelin receptor type A protein-coding 13-PTNLD9-TUMOR_peak_2783 chr1 110266161 110266255 + 6.06733 NA Intergenic AluJb|SINE|Alu 11344 NM_000851 2949 Hs.75652 NM_000851 HPRD:00711 GSTM5 GSTM5-5|GTM5 glutathione S-transferase mu 5 protein-coding 13-PTNLD9-TUMOR_peak_23862 chr19 8816285 8816399 + 6.06733 NA Intergenic Intergenic -7162 NM_178525 284382 Hs.209206 NM_178525 HPRD:14562 ACTL9 - actin-like 9 protein-coding 13-PTNLD9-TUMOR_peak_1524 chr1 44541954 44542145 + 6.06733 NA Intergenic LTR16D2|LTR|ERVL -42473 NM_173484 128209 Hs.567674 NM_173484 HPRD:08272 KLF17 ZNF393|Zfp393 Kruppel-like factor 17 protein-coding 13-PTNLD9-TUMOR_peak_36911 chr3 182327405 182327547 + 6.06733 NA Intergenic Intergenic -123326 NR_040105 401103 Hs.591304 NR_040105 ENSG00000241098 FLJ46066 - uncharacterized LOC401103 ncRNA 13-PTNLD9-TUMOR_peak_8412 chr10 118648239 118648333 + 6.06733 NA intron (NM_018330, intron 14 of 14) MLT2F|LTR|ERVL 39263 NM_001242699 387712 Hs.693248 NM_001242699 ENSG00000188316 ENO4 C10orf134 enolase family member 4 protein-coding 13-PTNLD9-TUMOR_peak_34445 chr3 46853583 46853682 + 6.06733 NA Intergenic Intergenic 21953 NM_182702 339906 Hs.585127 NM_182702 HPRD:07156 PRSS42 TESSP2 protease, serine, 42 protein-coding 13-PTNLD9-TUMOR_peak_4451 chr1 173966274 173966377 + 6.06733 NA Intergenic AluJo|SINE|Alu -4115 NM_001300850 149041 Hs.30258 NM_172071 HPRD:13913 RC3H1 RNF198|ROQUIN ring finger and CCCH-type domains 1 protein-coding 13-PTNLD9-TUMOR_peak_56624 chrX 150922655 150922783 + 6.06733 NA Intergenic Intergenic 19501 NM_005140 1260 Hs.447360 NM_005140 HPRD:08946 CNGA2 CNCA|CNCA1|CNG2|OCNC1|OCNCALPHA|OCNCa cyclic nucleotide gated channel alpha 2 protein-coding 13-PTNLD9-TUMOR_peak_14643 chr13 41495770 41495917 + 6.06733 NA promoter-TSS (NR_003365) promoter-TSS (NR_003365) 43 NR_038259 100616668 Hs.660718 NR_038258 TPTE2P5 - transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 5 pseudo 13-PTNLD9-TUMOR_peak_27999 chr2 110727579 110727709 + 6.06733 NA Intergenic LTR13|LTR|ERVK -16913 NR_046111 440894 Hs.516403 NR_046110 ENSG00000204588 LINC01123 - long intergenic non-protein coding RNA 1123 ncRNA 13-PTNLD9-TUMOR_peak_22565 chr18 9877086 9877343 + 6.06733 NA Intergenic LTR45C|LTR|ERV1 -8509 NM_032243 84203 Hs.98712 NM_032243 HPRD:11654 TXNDC2 SPTRX|SPTRX1 thioredoxin domain containing 2 (spermatozoa) protein-coding 13-PTNLD9-TUMOR_peak_12098 chr12 9217130 9217730 + 6.06733 NA promoter-TSS (NR_026971) promoter-TSS (NR_026971) 236 NR_034140 253128 Hs.408739 NM_001039381 ENSG00000214851 LINC00612 C12orf33 long intergenic non-protein coding RNA 612 ncRNA 13-PTNLD9-TUMOR_peak_50300 chr8 22525950 22526072 + 6.06205 NA intron (NM_018688, intron 1 of 8) intron (NM_018688, intron 1 of 8) 650 NM_018688 55909 Hs.433722 NM_018688 HPRD:05904 BIN3 - bridging integrator 3 protein-coding 13-PTNLD9-TUMOR_peak_12429 chr12 31004176 31004496 + 6.06205 NA Intergenic LTR13_|LTR|ERVK 55721 NR_040245 100287314 Hs.355210 NR_040245 ENSG00000235884 LINC00941 - long intergenic non-protein coding RNA 941 ncRNA 13-PTNLD9-TUMOR_peak_34077 chr3 24005117 24005226 + 6.06205 NA intron (NR_110524, intron 6 of 8) AluSz|SINE|Alu 17559 NM_001145425 9975 Hs.37288 NM_005126 HPRD:03809 NR1D2 BD73|EAR-1R|RVR nuclear receptor subfamily 1, group D, member 2 protein-coding 13-PTNLD9-TUMOR_peak_54139 chr9 99984251 99984365 + 6.06205 NA Intergenic CpG -16400 NR_036527 57653 Hs.435629 NR_036527 LOC100499484-C9ORF174 - LOC100499484-C9orf174 readthrough ncRNA 13-PTNLD9-TUMOR_peak_36416 chr3 151555020 151555138 + 6.06205 NA intron (NR_110202, intron 1 of 3) intron (NR_110202, intron 1 of 3) 23218 NM_001086 13 Hs.506908 NM_001086 HPRD:02640 AADAC CES5A1|DAC arylacetamide deacetylase protein-coding 13-PTNLD9-TUMOR_peak_16649 chr14 104094579 104094710 + 6.06205 NA promoter-TSS (NM_001130107) promoter-TSS (NM_001130107) -881 NM_001130107 3831 Hs.20107 NM_005552 HPRD:02489 KLC1 KLC|KNS2|KNS2A kinesin light chain 1 protein-coding 13-PTNLD9-TUMOR_peak_48528 chr7 100202412 100202551 + 6.06205 NA promoter-TSS (NR_038910) promoter-TSS (NR_038910) -820 NR_038910 100129845 Hs.714123 NR_038910 ENSG00000224729 PCOLCE-AS1 - PCOLCE antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_27761 chr2 97760997 97761111 + 6.06205 NA promoter-TSS (NM_199336) promoter-TSS (NM_199336) -472 NM_199336 151313 Hs.567723 NM_199336 HPRD:13198 FAHD2B - fumarylacetoacetate hydrolase domain containing 2B protein-coding 13-PTNLD9-TUMOR_peak_41733 chr5 111478621 111478961 + 6.06205 NA Intergenic MLT1H|LTR|ERVL-MaLR -17432 NR_015370 114915 Hs.12082 NM_053000 EPB41L4A-AS1 C5orf26|NCRNA00219|TIGA1 EPB41L4A antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_16244 chr14 74252677 74252859 + 6.06205 NA intron (NM_001043318, intron 1 of 11) intron (NM_001043318, intron 1 of 11) 1193 NM_001043318 91748 Hs.594157 NM_194278 HPRD:12648 ELMSAN1 C14orf117|C14orf43|LSR68|c14_5541 ELM2 and Myb/SANT-like domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_29163 chr2 176458676 176458770 + 6.06205 NA Intergenic L1PA2|LINE|L1 408295 NM_030650 80856 Hs.209561 NM_030650 KIAA1715 LNP|LNP1|Ul|ulnaless KIAA1715 protein-coding 13-PTNLD9-TUMOR_peak_18666 chr16 18944065 18944240 + 6.06205 NA Intergenic Intergenic -6426 NM_015092 23049 Hs.460179 NM_015092 HPRD:06123 SMG1 61E3.4|ATX|LIP SMG1 phosphatidylinositol 3-kinase-related kinase protein-coding 13-PTNLD9-TUMOR_peak_17300 chr15 52471589 52471705 + 6.06205 NA promoter-TSS (NR_102751) promoter-TSS (NR_102751) 515 NM_006578 10681 Hs.155090 NM_006578 HPRD:09191 GNB5 GB5 guanine nucleotide binding protein (G protein), beta 5 protein-coding 13-PTNLD9-TUMOR_peak_32918 chr22 23725626 23726024 + 6.06205 NA Intergenic Intergenic -1512 NR_037839 649264 Hs.600549 NR_037839 ENSG00000215478 CES5AP1 - carboxylesterase 5A pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_11874 chr12 4386214 4386339 + 6.06205 NA promoter-TSS (NR_125790) promoter-TSS (NR_125790) -926 NR_125790 103752584 Hs.577711 NR_125790 CCND2-AS1 - CCND2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_13216 chr12 67087823 67087946 + 6.06205 NA Intergenic MER91B|DNA|hAT-Tip100 -14959 NM_021150 23426 Hs.505946 NM_021150 ENSG00000155974 GRIP1 GRIP glutamate receptor interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_33605 chr3 5099602 5099707 + 6.05949 NA Intergenic Intergenic -64276 NM_018184 55207 Hs.250009 NM_018184 HPRD:12483 ARL8B ARL10C|Gie1 ADP-ribosylation factor-like 8B protein-coding 13-PTNLD9-TUMOR_peak_14204 chr12 124718109 124718240 + 6.05949 NA intron (NM_001204299, intron 3 of 4) intron (NM_001204299, intron 3 of 4) -55536 NM_181709 144347 Hs.432901 NM_181709 HPRD:14066 FAM101A CFM2 family with sequence similarity 101, member A protein-coding 13-PTNLD9-TUMOR_peak_48736 chr7 105697511 105697611 + 6.05949 NA Intergenic Intergenic 55230 NM_182715 6856 Hs.80919 NM_006754 HPRD:15459 SYPL1 H-SP1|SYPL synaptophysin-like 1 protein-coding 13-PTNLD9-TUMOR_peak_8290 chr10 106207640 106207958 + 6.05949 NA intron (NM_001008723, intron 16 of 17) intron (NM_001008723, intron 16 of 17) 32234 NR_120624 101927523 Hs.407539 NR_120624 ENSG00000225768 LOC101927523 - uncharacterized LOC101927523 ncRNA 13-PTNLD9-TUMOR_peak_22550 chr18 9612369 9612468 + 6.05949 NA intron (NM_001042388, intron 2 of 19) intron (NM_001042388, intron 2 of 19) 2187 NM_005134 9989 Hs.743236 NM_005134 ENSG00000154845 PPP4R1 MEG1|PP4(Rmeg)|PP4R1 protein phosphatase 4, regulatory subunit 1 protein-coding 13-PTNLD9-TUMOR_peak_37719 chr4 4542854 4543013 + 6.05949 NA promoter-TSS (NR_037888) promoter-TSS (NR_037888) 842 NM_016930 53407 Hs.584913 NM_016930 HPRD:06923 STX18 Ufe1 syntaxin 18 protein-coding 13-PTNLD9-TUMOR_peak_392 chr1 10896047 10896176 + 6.05949 NA Intergenic CpG -39378 NM_017766 54897 Hs.439894 NM_017766 HPRD:07897 CASZ1 CAS11|CST|SRG|ZNF693|dJ734G22.1 castor zinc finger 1 protein-coding 13-PTNLD9-TUMOR_peak_5469 chr1 222013341 222013506 + 6.05518 NA Intergenic Intergenic -97905 NM_007207 11221 Hs.497822 NM_007207 HPRD:12320 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 13-PTNLD9-TUMOR_peak_44256 chr6 26522291 26522440 + 6.05518 NA non-coding (NR_026790, exon 1 of 1) non-coding (NR_026790, exon 1 of 1) 431 NR_026790 493812 Hs.272939 NR_026790 ENSG00000228223 HCG11 bK14H9.3 HLA complex group 11 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_43299 chr5 179159183 179159391 + 6.05390 NA promoter-TSS (NM_014757) promoter-TSS (NM_014757) -564 NM_014757 9794 Hs.631951 NM_014757 HPRD:05665 MAML1 Mam-1|Mam1 mastermind-like 1 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_23455 chr18 72163898 72164074 + 6.05141 NA intron (NM_018235, intron 1 of 11) CpG 486 NM_018235 55748 Hs.149185 NM_018235 HPRD:09893 CNDP2 CN2|CPGL|HEL-S-13|HsT2298|PEPA CNDP dipeptidase 2 (metallopeptidase M20 family) protein-coding 13-PTNLD9-TUMOR_peak_16907 chr15 30402875 30403002 + 6.05141 NA intron (NR_026859, intron 2 of 4) intron (NR_026859, intron 2 of 4) 7003 NR_026859 89837 Hs.510848 NR_026859 ENSG00000178081 ULK4P3 D-X|FAM7A3 ULK4 pseudogene 3 pseudo 13-PTNLD9-TUMOR_peak_2759 chr1 109815948 109816058 + 6.05141 NA intron (NM_001408, intron 32 of 33) intron (NM_001408, intron 32 of 33) 9787 NM_032636 84722 Hs.405925 NM_032636 HPRD:13127 PSRC1 DDA3|FP3214 proline/serine-rich coiled-coil 1 protein-coding 13-PTNLD9-TUMOR_peak_50109 chr8 12380178 12380430 + 6.04651 NA intron (NR_040091, intron 5 of 6) HERVS71-int|LTR|ERV1 85782 NR_040092 100506990 Hs.656893 NR_040091 LOC100506990 - uncharacterized LOC100506990 ncRNA 13-PTNLD9-TUMOR_peak_53087 chr9 34659720 34659828 + 6.04651 NA exon (NM_001142784, exon 9 of 13) exon (NM_001142784, exon 9 of 13) 2915 NM_006664 10850 Hs.648124 NM_006664 HPRD:05321 CCL27 ALP|CTACK|CTAK|ESKINE|ILC|PESKY|SCYA27 chemokine (C-C motif) ligand 27 protein-coding 13-PTNLD9-TUMOR_peak_46796 chr7 5631200 5631419 + 6.03900 NA Intergenic Intergenic -1127 NM_003088 6624 Hs.118400 NM_003088 HPRD:04068 FSCN1 FAN1|HSN|SNL|p55 fascin actin-bundling protein 1 protein-coding 13-PTNLD9-TUMOR_peak_46901 chr7 12250267 12250631 + 6.03171 NA promoter-TSS (NM_001134232) promoter-TSS (NM_001134232) -399 NM_001134232 54664 Hs.396358 NM_018374 TMEM106B - transmembrane protein 106B protein-coding 13-PTNLD9-TUMOR_peak_53643 chr9 75766621 75766788 + 6.03171 NA promoter-TSS (NM_000700) promoter-TSS (NM_000700) -77 NM_000700 301 Hs.494173 NM_000700 HPRD:01060 ANXA1 ANX1|LPC1 annexin A1 protein-coding 13-PTNLD9-TUMOR_peak_38466 chr4 57843807 57843939 + 6.03171 NA promoter-TSS (NM_032313) promoter-TSS (NM_032313) -47 NM_032313 84273 Hs.8715 NM_032313 NOA1 C4orf14|MTG3|hAtNOS1|hNOA1|mAtNOS1 nitric oxide associated 1 protein-coding 13-PTNLD9-TUMOR_peak_37886 chr4 8405101 8405206 + 6.03142 NA intron (NM_003501, intron 7 of 17) intron (NM_003501, intron 7 of 17) 37299 NM_001101667 8310 Hs.479122 NM_003501 HPRD:04552 ACOX3 - acyl-CoA oxidase 3, pristanoyl protein-coding 13-PTNLD9-TUMOR_peak_45155 chr6 44432398 44432540 + 6.03142 NA Intergenic L3|LINE|CR1 29091 NR_039785 100616352 NR_039785 MIR4642 - microRNA 4642 ncRNA 13-PTNLD9-TUMOR_peak_23409 chr18 65085525 65085657 + 6.03142 NA Intergenic Intergenic -98192 NR_033921 643542 Hs.652901 NR_033921 ENSG00000265533 LOC643542 - uncharacterized LOC643542 ncRNA 13-PTNLD9-TUMOR_peak_50847 chr8 47037359 47037457 + 6.03142 NA Intergenic HERV3-int|LTR|ERV1 -715100 NR_027012 497634 Hs.406982 NR_027012 ENSG00000253314 LINC00293 BEYLA|NCRNA00293 long intergenic non-protein coding RNA 293 ncRNA 13-PTNLD9-TUMOR_peak_112 chr1 2071558 2071687 + 6.03142 NA intron (NM_001242874, intron 2 of 14) L1MEd|LINE|L1 35467 NM_001033582 5590 Hs.496255 NM_002744 HPRD:01504 PRKCZ PKC-ZETA|PKC2 protein kinase C, zeta protein-coding 13-PTNLD9-TUMOR_peak_14421 chr13 23489773 23489873 + 6.03142 NA Intergenic CpG -17503 NR_033774 646201 Hs.729338 NR_033774 BASP1P1 - brain abundant, membrane attached signal protein 1 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_6297 chr10 3239674 3239813 + 6.03142 NA Intergenic Intergenic -24710 NM_001242307 10531 Hs.528300 NM_014889 HPRD:07142 PITRM1 MP1|PreP pitrilysin metallopeptidase 1 protein-coding 13-PTNLD9-TUMOR_peak_27553 chr2 89065225 89065319 + 6.03142 NA promoter-TSS (NR_015424) promoter-TSS (NR_015424) -147 NR_015424 645784 Hs.105323 NR_015424 ENSG00000230006 ANKRD36BP2 - ankyrin repeat domain 36B pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_50485 chr8 28943456 28943611 + 6.03142 NA intron (NM_015254, intron 37 of 39) intron (NM_015254, intron 37 of 39) 177077 NM_015254 23303 Hs.444767 NM_015254 HPRD:09556 KIF13B GAKIN kinesin family member 13B protein-coding 13-PTNLD9-TUMOR_peak_33835 chr3 13339616 13339726 + 6.03142 NA Intergenic AluY|SINE|Alu 122148 NM_024923 23225 Hs.475525 NM_024923 HPRD:06368 NUP210 GP210|POM210 nucleoporin 210kDa protein-coding 13-PTNLD9-TUMOR_peak_5349 chr1 211786838 211787085 + 6.03142 NA Intergenic Intergenic -34862 NM_021194 7779 Hs.519469 NM_021194 SLC30A1 ZNT1|ZRC1 solute carrier family 30 (zinc transporter), member 1 protein-coding 13-PTNLD9-TUMOR_peak_45568 chr6 80163348 80163644 + 6.03142 NA Intergenic Intergenic 83651 NM_181714 167691 Hs.21945 NM_181714 HPRD:10791 LCA5 C6orf152 Leber congenital amaurosis 5 protein-coding 13-PTNLD9-TUMOR_peak_15994 chr14 63938129 63938232 + 6.03142 NA intron (NM_006246, intron 2 of 13) intron (NM_006246, intron 2 of 13) 36776 NM_001282182 5529 Hs.334868 NM_006246 PPP2R5E - protein phosphatase 2, regulatory subunit B', epsilon isoform protein-coding 13-PTNLD9-TUMOR_peak_38675 chr4 79291984 79292098 + 6.03142 NA intron (NM_001166133, intron 23 of 41) intron (NM_001166133, intron 23 of 41) -180701 NM_005139 306 Hs.480042 NM_005139 HPRD:00111 ANXA3 ANX3 annexin A3 protein-coding 13-PTNLD9-TUMOR_peak_20203 chr17 831539 831633 + 6.03142 NA intron (NM_022463, intron 1 of 7) L3|LINE|CR1 51412 NM_022463 64359 Hs.527989 NM_022463 HPRD:14858 NXN NRX|TRG-4 nucleoredoxin protein-coding 13-PTNLD9-TUMOR_peak_46080 chr6 134066858 134067220 + 6.03142 NA intron (NR_109982, intron 4 of 8) intron (NR_109982, intron 4 of 8) -75246 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 13-PTNLD9-TUMOR_peak_45550 chr6 79411276 79411379 + 6.03142 NA Intergenic Intergenic -165934 NM_001010844 134728 Hs.656212 NM_001010844 HPRD:17157 IRAK1BP1 AIP70|SIMPL interleukin-1 receptor-associated kinase 1 binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_3579 chr1 150853902 150854042 + 6.03133 NA Intergenic Intergenic -4728 NM_001668 405 Hs.632446 NM_001668 HPRD:00524 ARNT HIF-1-beta|HIF-1beta|HIF1-beta|HIF1B|HIF1BETA|TANGO|bHLHe2 aryl hydrocarbon receptor nuclear translocator protein-coding 13-PTNLD9-TUMOR_peak_29538 chr2 201990453 201990561 + 6.03131 NA intron (NM_001127183, intron 1 of 9) intron (NM_001127183, intron 1 of 9) -7181 NM_001202518 8837 Hs.390736 NM_003879 HPRD:04671 CFLAR CASH|CASP8AP1|CLARP|Casper|FLAME|FLAME-1|FLAME1|FLIP|I-FLICE|MRIT|c-FLIP|c-FLIPL|c-FLIPR|c-FLIPS CASP8 and FADD-like apoptosis regulator protein-coding 13-PTNLD9-TUMOR_peak_26841 chr2 47212392 47212589 + 6.03131 NA intron (NM_001288955, intron 5 of 18) intron (NM_001288955, intron 5 of 18) -43496 NM_001171511 90411 Hs.662152 NM_139279 HPRD:09693 MCFD2 F5F8D|F5F8D2|LMAN1IP|SDNSF multiple coagulation factor deficiency 2 protein-coding 13-PTNLD9-TUMOR_peak_11204 chr11 111802645 111802764 + 6.03131 NA intron (NM_001278542, intron 2 of 5) intron (NM_001278542, intron 2 of 5) 4836 NM_001278542 85458 Hs.655626 NM_033425 HPRD:16804 DIXDC1 CCD1 DIX domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_8105 chr10 99185806 99186062 + 6.03131 NA promoter-TSS (NM_002629) promoter-TSS (NM_002629) -93 NM_002629 5223 Hs.632918 NM_002629 HPRD:01392 PGAM1 HEL-S-35|PGAM-B|PGAMA phosphoglycerate mutase 1 (brain) protein-coding 13-PTNLD9-TUMOR_peak_24909 chr19 39156655 39156767 + 6.03131 NA intron (NM_004924, intron 1 of 20) intron (NM_004924, intron 1 of 20) 18444 NM_004924 81 Hs.270291 NM_004924 ACTN4 ACTININ-4|FSGS|FSGS1 actinin, alpha 4 protein-coding 13-PTNLD9-TUMOR_peak_5048 chr1 202896616 202896710 + 6.03131 NA promoter-TSS (NM_021633) promoter-TSS (NM_021633) -292 NM_021633 59349 Hs.706793 NM_021633 HPRD:13925 KLHL12 C3IP1|DKIR|hDKIR kelch-like family member 12 protein-coding 13-PTNLD9-TUMOR_peak_29132 chr2 174856694 174856873 + 6.03131 NA Intergenic Intergenic -26353 NM_003111 6670 Hs.531587 NM_003111 HPRD:03483 SP3 SPR2 Sp3 transcription factor protein-coding 13-PTNLD9-TUMOR_peak_14335 chr12 132354751 132354846 + 6.03131 NA Intergenic L1ME3F|LINE|L1 -24481 NM_003565 8408 Hs.47061 NM_003565 HPRD:11933 ULK1 ATG1|ATG1A|UNC51|Unc51.1|hATG1 unc-51 like autophagy activating kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_3711 chr1 153367560 153367879 + 6.03131 NA Intergenic Intergenic -4055 NM_002964 6279 Hs.416073 NM_002964 HPRD:00471 S100A8 60B8AG|CAGA|CFAG|CGLA|CP-10|L1Ag|MA387|MIF|MRP8|NIF|P8 S100 calcium binding protein A8 protein-coding 13-PTNLD9-TUMOR_peak_20943 chr17 36610866 36610993 + 6.03131 NA intron (NM_001199417, intron 1 of 23) intron (NM_001199417, intron 1 of 23) 26209 NM_001199417 57636 Hs.374446 NM_020876 ENSG00000225485 ARHGAP23 - Rho GTPase activating protein 23 protein-coding 13-PTNLD9-TUMOR_peak_40579 chr5 34499364 34499494 + 6.03098 NA Intergenic THE1D|LTR|ERVL-MaLR -157004 NM_015577 26064 Hs.431400 NM_015577 HPRD:09416 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 13-PTNLD9-TUMOR_peak_31301 chr20 46464901 46464995 + 6.03098 NA Intergenic Intergenic -49588 NM_198596 55959 Hs.162016 NM_018837 HPRD:18130 SULF2 HSULF-2 sulfatase 2 protein-coding 13-PTNLD9-TUMOR_peak_51509 chr8 104186125 104186261 + 6.03098 NA intron (NM_001024372, intron 1 of 1) intron (NM_001024372, intron 1 of 1) -1825 NR_109954 100499183 Hs.654812 NR_034092 ENSG00000247081 BAALC-AS1 - BAALC antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_8315 chr10 111836665 111836855 + 6.03098 NA intron (NM_016824, intron 1 of 14) intron (NM_016824, intron 1 of 14) -68621 NR_038943 100505933 Hs.604103 NR_038943 ADD3-AS1 - ADD3 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_30324 chr20 3788282 3788400 + 6.03098 NA promoter-TSS (NR_109859) promoter-TSS (NR_109859) -800 NR_109859 101929125 Hs.744106 NR_109859 LOC101929125 - uncharacterized LOC101929125 ncRNA 13-PTNLD9-TUMOR_peak_18408 chr16 5121800 5121958 + 6.03098 NA promoter-TSS (NM_019109) promoter-TSS (NM_019109) 69 NM_019109 56052 Hs.592086 NM_019109 ALG1 CDG1K|HMAT1|HMT-1|HMT1|MT-1|Mat-1|hMat-1 ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase protein-coding 13-PTNLD9-TUMOR_peak_53870 chr9 89598274 89598460 + 6.03098 NA intron (NR_049794, intron 3 of 6) intron (NR_049794, intron 3 of 6) 34754 NR_049794 100506834 Hs.553987 NR_049794 ENSG00000226237 LOC100506834 - uncharacterized LOC100506834 ncRNA 13-PTNLD9-TUMOR_peak_42859 chr5 159743108 159743250 + 6.03098 NA Intergenic Intergenic -3606 NM_024565 79616 Hs.14070 NM_024565 HPRD:07853 CCNJL - cyclin J-like protein-coding 13-PTNLD9-TUMOR_peak_822 chr1 27867021 27867151 + 6.03098 NA intron (NM_001029882, intron 6 of 6) L2c|LINE|L2 -50408 NM_001201404 10163 Hs.469244 NM_006990 HPRD:05796 WASF2 IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2 WAS protein family, member 2 protein-coding 13-PTNLD9-TUMOR_peak_4286 chr1 166913964 166914064 + 6.03098 NA intron (NM_199351, intron 3 of 9) intron (NM_199351, intron 3 of 9) 30547 NM_199351 387597 Hs.444835 NM_199351 HPRD:12724 ILDR2 C1orf32|dJ782G3.1 immunoglobulin-like domain containing receptor 2 protein-coding 13-PTNLD9-TUMOR_peak_40929 chr5 56059601 56059704 + 6.03098 NA Intergenic Intergenic -51248 NM_005921 4214 Hs.653654 NM_005921 ENSG00000095015 MAP3K1 MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6 mitogen-activated protein kinase kinase kinase 1, E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_32082 chr21 30535296 30535424 + 6.03098 NA intron (NM_001286622, intron 8 of 8) AluSz6|SINE|Alu 17480 NM_001286624 56911 Hs.222802 NM_020152 HPRD:10764 MAP3K7CL C21orf7|HC21ORF7|TAK1L|TAKL|TAKL-1|TAKL-2|TAKL-4 MAP3K7 C-terminal like protein-coding 13-PTNLD9-TUMOR_peak_49770 chr7 154419322 154419455 + 6.03098 NA intron (NM_001290252, intron 5 of 23) intron (NM_001290252, intron 5 of 23) -300839 NR_024477 100132707 Hs.586358 NR_024476 ENSG00000214106 PAXIP1OS PAXIP1-AS2 PAXIP1 opposite strand ncRNA 13-PTNLD9-TUMOR_peak_4950 chr1 201366259 201366401 + 6.03024 NA intron (NM_005558, intron 1 of 9) intron (NM_005558, intron 1 of 9) 2339 NM_005558 3898 Hs.519035 NM_005558 HPRD:03815 LAD1 LadA ladinin 1 protein-coding 13-PTNLD9-TUMOR_peak_28369 chr2 128144786 128145080 + 6.03024 NA Intergenic GC_rich|Low_complexity|Low_complexity -31063 NM_000312 5624 Hs.224698 NM_000312 HPRD:01466 PROC APC|PC|PROC1|THPH3|THPH4 protein C (inactivator of coagulation factors Va and VIIIa) protein-coding 13-PTNLD9-TUMOR_peak_31828 chr20 62485886 62485997 + 6.02377 NA Intergenic Intergenic -6625 NM_080622 140701 Hs.266774 NM_080622 HPRD:12746 ABHD16B C20orf135|dJ591C20.1 abhydrolase domain containing 16B protein-coding 13-PTNLD9-TUMOR_peak_25231 chr19 47744356 47744479 + 6.02377 NA Intergenic Intergenic -8394 NM_001127242 27113 Hs.467020 NM_014417 HPRD:16165 BBC3 JFY-1|JFY1|PUMA BCL2 binding component 3 protein-coding 13-PTNLD9-TUMOR_peak_36774 chr3 174157618 174157877 + 6.02133 NA Intergenic Intergenic -419364 NM_207015 254827 Hs.565848 NM_207015 HPRD:16388 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase-like 2 protein-coding 13-PTNLD9-TUMOR_peak_15688 chr14 50101909 50102085 + 6.01169 NA promoter-TSS (NM_018139) promoter-TSS (NM_018139) -49 NM_001083908 55172 Hs.231761 NM_018139 HPRD:12627 DNAAF2 C14orf104|CILD10|KTU|PF13 dynein, axonemal, assembly factor 2 protein-coding 13-PTNLD9-TUMOR_peak_34550 chr3 49507889 49508209 + 6.01108 NA intron (NM_001177644, intron 1 of 2) CpG 484 NM_001177644 1605 Hs.76111 NM_004393 HPRD:00546 DAG1 156DAG|A3a|AGRNR|DAG|MDDGC7|MDDGC9 dystroglycan 1 (dystrophin-associated glycoprotein 1) protein-coding 13-PTNLD9-TUMOR_peak_18437 chr16 8962531 8962670 + 6.01108 NA promoter-TSS (NM_001278261) promoter-TSS (NM_001278261) -24 NM_001278261 23589 Hs.632184 NM_014316 HPRD:08515 CARHSP1 CRHSP-24|CSDC1 calcium regulated heat stable protein 1, 24kDa protein-coding 13-PTNLD9-TUMOR_peak_32625 chr22 16200714 16200819 + 6.00512 NA Intergenic Intergenic -7757 NR_122113 503637 Hs.744284 NR_122113 DUXAP8 - double homeobox A pseudogene 8 pseudo 13-PTNLD9-TUMOR_peak_28799 chr2 157189536 157189839 + 6.00446 NA promoter-TSS (NM_006186) promoter-TSS (NM_006186) -400 NM_006186 4929 Hs.563344 NM_006186 HPRD:03493 NR4A2 HZF-3|NOT|NURR1|RNR1|TINUR nuclear receptor subfamily 4, group A, member 2 protein-coding 13-PTNLD9-TUMOR_peak_1791 chr1 53163666 53164178 + 6.00409 NA exon (NM_023077, exon 1 of 3) exon (NM_023077, exon 1 of 3) 116 NM_023077 65260 Hs.349905 NM_023077 COA7 C1orf163|RESA1|SELRC1 cytochrome c oxidase assembly factor 7 (putative) protein-coding 13-PTNLD9-TUMOR_peak_7318 chr10 49863570 49863753 + 6.00409 NA non-coding (NR_045675, exon 1 of 11) non-coding (NR_045675, exon 1 of 11) 649 NR_045675 58504 Hs.655672 NM_021226 HPRD:12476 ARHGAP22 RhoGAP2|RhoGap22 Rho GTPase activating protein 22 protein-coding 13-PTNLD9-TUMOR_peak_5685 chr1 228083655 228083953 + 6.00409 NA Intergenic Intergenic 45580 NR_049806 100847072 NR_049806 MIR5008 - microRNA 5008 ncRNA 13-PTNLD9-TUMOR_peak_1983 chr1 60955868 60956071 + 6.00325 NA Intergenic L1PA3|LINE|L1 335287 NR_110628 101926964 Hs.650459 NR_110628 ENSG00000231252 LOC101926964 - uncharacterized LOC101926964 ncRNA 13-PTNLD9-TUMOR_peak_3589 chr1 150986168 150986335 + 6.00325 NA intron (NM_021222, intron 1 of 7) intron (NM_021222, intron 1 of 7) 5278 NM_021222 58497 Hs.78524 NM_021222 HPRD:15188 PRUNE DRES-17|DRES17|HTCD37 prune exopolyphosphatase protein-coding 13-PTNLD9-TUMOR_peak_7903 chr10 85899461 85899591 + 6.00325 NA intron (NM_014394, intron 1 of 8) CpG 341 NM_014394 27069 Hs.352656 NM_014394 HPRD:17038 GHITM DERP2|HSPC282|MICS1|PTD010|TMBIM5 growth hormone inducible transmembrane protein protein-coding 13-PTNLD9-TUMOR_peak_18736 chr16 21566133 21566227 + 6.00325 NA Intergenic Intergenic -34415 NR_002594 387254 Hs.448808 NR_002594 SLC7A5P2 IMAA|MMAA solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_1722 chr1 48964239 48964381 + 6.00325 NA Intergenic MamGypLTR3|LTR|Gypsy -26430 NM_019073 54558 Hs.538103 NM_019073 HPRD:15430 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 13-PTNLD9-TUMOR_peak_29131 chr2 174856335 174856489 + 6.00325 NA Intergenic Intergenic -25982 NM_003111 6670 Hs.531587 NM_003111 HPRD:03483 SP3 SPR2 Sp3 transcription factor protein-coding 13-PTNLD9-TUMOR_peak_52470 chr8 144948549 144948797 + 6.00270 NA intron (NM_031308, intron 1 of 1) MLT1C|LTR|ERVL-MaLR 3959 NM_031308 83481 Hs.200412 NM_031308 EPPK1 EPIPL|EPIPL1 epiplakin 1 protein-coding 13-PTNLD9-TUMOR_peak_19129 chr16 33249260 33249456 + 6.00270 NA Intergenic Intergenic -12760 NR_110911 729355 Hs.592038 NM_001099687 ENSG00000261509 TP53TG3B - TP53 target 3B protein-coding 13-PTNLD9-TUMOR_peak_51152 chr8 74206392 74206526 + 6.00035 NA promoter-TSS (NM_172037) promoter-TSS (NM_172037) -378 NM_172037 157506 Hs.244940 NM_172037 HPRD:07605 RDH10 SDR16C4 retinol dehydrogenase 10 (all-trans) protein-coding 13-PTNLD9-TUMOR_peak_20498 chr17 12635395 12635551 + 6.00035 NA intron (NM_001146312, intron 5 of 13) intron (NM_001146312, intron 5 of 13) -26021 NR_104605 101928418 Hs.620346 NR_104605 ENSG00000227274 LOC101928418 - uncharacterized LOC101928418 ncRNA 13-PTNLD9-TUMOR_peak_26717 chr2 43385477 43385582 + 6.00035 NA Intergenic Intergenic 68216 NM_006887 678 Hs.503093 NM_006887 HPRD:18319 ZFP36L2 BRF2|ERF-2|ERF2|RNF162C|TIS11D ZFP36 ring finger protein-like 2 protein-coding 13-PTNLD9-TUMOR_peak_7579 chr10 70716319 70716420 + 6.00035 NA 5' UTR (NM_001256910, exon 1 of 15) 5' UTR (NM_001256910, exon 1 of 15) 173 NM_001256910 9188 Hs.223141 NM_004728 HPRD:05895 DDX21 GUA|GURDB|RH-II/GU|RH-II/GuA DEAD (Asp-Glu-Ala-Asp) box helicase 21 protein-coding 13-PTNLD9-TUMOR_peak_16138 chr14 69428917 69429157 + 6.00035 NA intron (NM_001102, intron 1 of 20) intron (NM_001102, intron 1 of 20) 17046 NM_001130004 87 Hs.509765 NM_001102 HPRD:00020 ACTN1 BDPLT15 actinin, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_43217 chr5 177152038 177152224 + 6.00035 NA intron (NM_173663, intron 17 of 19) intron (NM_173663, intron 17 of 19) -52853 NR_026921 202181 Hs.189914 NR_026921 LOC202181 - SUMO-interacting motifs containing 1 pseudogene pseudo 13-PTNLD9-TUMOR_peak_11198 chr11 111671284 111671437 + 5.99961 NA intron (NM_001077691, intron 14 of 14) L2b|LINE|L2 -34191 NM_181699 5519 Hs.269128 NM_002716 HPRD:04384 PPP2R1B PP2A-Abeta|PR65B protein phosphatase 2, regulatory subunit A, beta protein-coding 13-PTNLD9-TUMOR_peak_13997 chr12 118794823 118795022 + 5.99961 NA intron (NM_016281, intron 1 of 20) intron (NM_016281, intron 1 of 20) 15828 NM_016281 51347 Hs.644420 NM_016281 HPRD:11620 TAOK3 DPK|JIK|MAP3K18 TAO kinase 3 protein-coding 13-PTNLD9-TUMOR_peak_23199 chr18 48762688 48762840 + 5.99961 NA Intergenic Intergenic -38713 NM_016626 51320 Hs.465144 NM_016626 HPRD:15255 MEX3C MEX-3C|RKHD2|RNF194 mex-3 RNA binding family member C protein-coding 13-PTNLD9-TUMOR_peak_3717 chr1 153499666 153499796 + 5.99961 NA Intergenic MER83B-int|LTR|ERV1 8986 NM_014624 6277 Hs.275243 NM_014624 HPRD:00237 S100A6 2A9|5B10|CABP|CACY|PRA S100 calcium binding protein A6 protein-coding 13-PTNLD9-TUMOR_peak_33062 chr22 29663825 29664063 + 5.99961 NA promoter-TSS (NM_001163287) promoter-TSS (NM_001163287) -30 NM_012265 25807 Hs.106730 NM_012265 HPRD:12800 RHBDD3 C22orf3|HS984G1A|PTAG rhomboid domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_26731 chr2 43532845 43532952 + 5.99961 NA intron (NM_022065, intron 31 of 37) intron (NM_022065, intron 31 of 37) 78548 NR_027251 100129726 Hs.194480 NM_178529 LINC01126 - long intergenic non-protein coding RNA 1126 ncRNA 13-PTNLD9-TUMOR_peak_25054 chr19 42462548 42463048 + 5.99961 NA intron (NM_006423, intron 2 of 4) (CGGGG)n|Simple_repeat|Simple_repeat 730 NM_006423 10567 Hs.11417 NM_006423 HPRD:05375 RABAC1 PRA1|PRAF1|YIP3 Rab acceptor 1 (prenylated) protein-coding 13-PTNLD9-TUMOR_peak_21050 chr17 39805060 39805154 + 5.99961 NA Intergenic Intergenic -8656 NR_033415 284116 Hs.725790 NR_033415 ENSG00000214514 KRT42P - keratin 42 pseudogene pseudo 13-PTNLD9-TUMOR_peak_17948 chr15 89901959 89902092 + 5.99961 NA Intergenic CpG -9223 NR_029692 407051 NR_029692 miRBase:MI0000468 MIR9-3 MIRN9-3|hsa-mir-9-3|miRNA9-3 microRNA 9-3 ncRNA 13-PTNLD9-TUMOR_peak_35582 chr3 123047816 123047917 + 5.99961 NA intron (NM_001199642, intron 5 of 20) intron (NM_001199642, intron 5 of 20) 87323 NM_001199642 111 Hs.593292 NM_183357 HPRD:08973 ADCY5 AC5|FDFM adenylate cyclase 5 protein-coding 13-PTNLD9-TUMOR_peak_36587 chr3 159847442 159847663 + 5.99961 NA intron (NR_108088, intron 3 of 9) intron (NR_108088, intron 3 of 9) 77327 NR_108088 101928376 Hs.565865 NR_108088 ENSG00000244040 IL12A-AS1 - IL12A antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_17958 chr15 90437035 90437420 + 5.99961 NA non-coding (NR_023361, exon 1 of 7) non-coding (NR_023361, exon 1 of 7) 390 NR_023361 10239 Hs.632161 NM_005829 HPRD:03880 AP3S2 AP3S3|sigma3b adaptor-related protein complex 3, sigma 2 subunit protein-coding 13-PTNLD9-TUMOR_peak_31230 chr20 44834794 44834939 + 5.99961 NA intron (NM_021248, intron 7 of 11) MIRb|SINE|MIR 87960 NM_152854 958 Hs.472860 NM_001250 HPRD:00178 CD40 Bp50|CDW40|TNFRSF5|p50 CD40 molecule, TNF receptor superfamily member 5 protein-coding 13-PTNLD9-TUMOR_peak_10352 chr11 67152608 67152917 + 5.99961 NA intron (NR_024469, intron 2 of 3) intron (NR_024469, intron 2 of 3) -6661 NM_004584 5883 Hs.655354 NM_004584 HPRD:04788 RAD9A RAD9 RAD9 homolog A (S. pombe) protein-coding 13-PTNLD9-TUMOR_peak_15527 chr14 34726827 34726963 + 5.99961 NA Intergenic MER39|LTR|ERV1 204573 NM_138288 171546 Hs.740577 NM_138288 HPRD:16610 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase, small subunit A protein-coding 13-PTNLD9-TUMOR_peak_38217 chr4 40285653 40285876 + 5.99683 NA Intergenic Intergenic -23438 NR_121641 101060498 Hs.351492 NR_121640 ENSG00000249241 LOC101060498 - uncharacterized LOC101060498 ncRNA 13-PTNLD9-TUMOR_peak_21906 chr17 70605778 70605936 + 5.99683 NA intron (NR_033876, intron 3 of 4) intron (NR_033876, intron 3 of 4) -16914 NR_036488 100499467 Hs.157726 NR_036488 LINC00673 LINC00511 long intergenic non-protein coding RNA 673 ncRNA 13-PTNLD9-TUMOR_peak_28472 chr2 132399266 132399402 + 5.99683 NA intron (NR_108087, intron 1 of 1) L1MCc|LINE|L1 4736 NR_108087 101927994 Hs.635757 NR_108087 ENSG00000224559 LINC01087 - long intergenic non-protein coding RNA 1087 ncRNA 13-PTNLD9-TUMOR_peak_38529 chr4 67438773 67438899 + 5.99683 NA Intergenic Intergenic 848882 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 13-PTNLD9-TUMOR_peak_14555 chr13 32525484 32525589 + 5.99683 NA intron (NR_027062, intron 2 of 3) intron (NR_027062, intron 2 of 3) -79901 NM_023037 10129 Hs.507669 NM_023037 HPRD:10821 FRY 13CDNA73|214K23.2|C13orf14|CG003|bA207N4.2|bA37E23.1 furry homolog (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_22769 chr18 20780853 20780981 + 5.99683 NA intron (NR_023359, intron 3 of 6) L3|LINE|CR1 45128 NM_138375 91768 Hs.11108 NM_138375 HPRD:16461 CABLES1 CABL1|CABLES|HsT2563|IK3-1 Cdk5 and Abl enzyme substrate 1 protein-coding 13-PTNLD9-TUMOR_peak_13751 chr12 109016305 109016399 + 5.99683 NA 3' UTR (NM_003006, exon 2 of 2) 3' UTR (NM_003006, exon 2 of 2) 9502 NM_001206609 6404 Hs.591014 NM_003006 HPRD:02845 SELPLG CD162|CLA|PSGL-1|PSGL1 selectin P ligand protein-coding 13-PTNLD9-TUMOR_peak_6742 chr10 26970888 26971014 + 5.99683 NA Intergenic MER44B|DNA|TcMar-Tigger -15644 NM_014317 23590 Hs.558468 NM_014317 HPRD:09591 PDSS1 COQ1|COQ10D2|DPS|SPS|TPRT|TPT|TPT 1|hDPS1 prenyl (decaprenyl) diphosphate synthase, subunit 1 protein-coding 13-PTNLD9-TUMOR_peak_21822 chr17 64547232 64547326 + 5.99683 NA intron (NM_002737, intron 3 of 16) AluJr|SINE|Alu -134307 NR_110822 101928001 Hs.650730 NR_110822 ENSG00000264630 LOC101928001 - uncharacterized LOC101928001 ncRNA 13-PTNLD9-TUMOR_peak_28870 chr2 160615343 160615444 + 5.99683 NA intron (NM_001282807, intron 5 of 8) intron (NM_001282807, intron 5 of 8) 24991 NM_001282807 64844 Hs.529272 NM_022826 MARCH7 AXO|AXOT|MARCH-VII|RNF177 membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_53521 chr9 70218226 70218349 + 5.99683 NA Intergenic L3|LINE|CR1 -39472 NM_001126334 653427 Hs.714683 NM_001126334 ENSG00000204779 FOXD4L5 bA15J10.2 forkhead box D4-like 5 protein-coding 13-PTNLD9-TUMOR_peak_9705 chr11 46936086 46936233 + 5.99683 NA intron (NM_002334, intron 1 of 37) intron (NM_002334, intron 1 of 37) 4014 NM_002334 4038 Hs.4930 NM_002334 HPRD:18517 LRP4 CLSS|LRP-4|LRP10|MEGF7|SOST2 low density lipoprotein receptor-related protein 4 protein-coding 13-PTNLD9-TUMOR_peak_23360 chr18 60088023 60088131 + 5.99683 NA Intergenic L3|LINE|CR1 95557 NM_001270949 8792 Hs.204044 NM_003839 HPRD:04609 TNFRSF11A CD265|FEO|LOH18CR1|ODFR|OFE|OPTB7|OSTS|PDB2|RANK|TRANCER tumor necrosis factor receptor superfamily, member 11a, NFKB activator protein-coding 13-PTNLD9-TUMOR_peak_42869 chr5 160121052 160121212 + 5.99683 NA intron (NM_025153, intron 3 of 25) intron (NM_025153, intron 3 of 25) 158087 NM_025153 23120 Hs.109358 NM_025153 HPRD:08637 ATP10B ATPVB ATPase, class V, type 10B protein-coding 13-PTNLD9-TUMOR_peak_32870 chr22 22271637 22271757 + 5.99683 NA Intergenic Intergenic 35553 NM_014634 9647 Hs.112728 NM_014634 HPRD:10163 PPM1F CAMKP|CaMKPase|FEM-2|POPX2|hFEM-2 protein phosphatase, Mg2+/Mn2+ dependent, 1F protein-coding 13-PTNLD9-TUMOR_peak_32253 chr21 37442443 37442745 + 5.99683 NA exon (NM_001757, exon 1 of 3) exon (NM_001757, exon 1 of 3) 372 NM_001757 873 Hs.88778 NM_001757 HPRD:00267 CBR1 CBR|SDR21C1|hCBR1 carbonyl reductase 1 protein-coding 13-PTNLD9-TUMOR_peak_2258 chr1 79316562 79316703 + 5.99683 NA Intergenic L1PA2|LINE|L1 155863 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ELTD1 ETL|KPG_003 EGF, latrophilin and seven transmembrane domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_5429 chr1 220660780 220660930 + 5.99683 NA Intergenic Intergenic -40670 NM_001286126 4139 Hs.497806 NM_018650 HPRD:07353 MARK1 MARK|Par-1c|Par1c MAP/microtubule affinity-regulating kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_35997 chr3 133794782 133795003 + 5.99683 NA Intergenic L2a|LINE|L2 -45972 NM_005630 6578 Hs.518270 NM_005630 HPRD:03269 SLCO2A1 MATR1|OATP2A1|PGT|PHOAR2|SLC21A2 solute carrier organic anion transporter family, member 2A1 protein-coding 13-PTNLD9-TUMOR_peak_33987 chr3 17217075 17217234 + 5.99683 NA intron (NM_001134381, intron 21 of 23) intron (NM_001134381, intron 21 of 23) 242466 NR_037465 100500913 NR_037465 miRBase:MI0016135 MIR3714 - microRNA 3714 ncRNA 13-PTNLD9-TUMOR_peak_45275 chr6 51930550 51930644 + 5.99683 NA intron (NM_138694, intron 12 of 66) intron (NM_138694, intron 12 of 66) 21826 NM_170724 5314 Hs.662050 NM_138694 HPRD:05987 PKHD1 ARPKD|FCYT|TIGM1 polycystic kidney and hepatic disease 1 (autosomal recessive) protein-coding 13-PTNLD9-TUMOR_peak_39900 chr4 177116488 177116875 + 5.99683 NA exon (NM_144644, exon 1 of 6) exon (NM_144644, exon 1 of 6) 141 NM_144644 132851 Hs.481235 NM_144644 HPRD:15429 SPATA4 SPEF1B|TSARG2 spermatogenesis associated 4 protein-coding 13-PTNLD9-TUMOR_peak_6931 chr10 35262798 35262899 + 5.99683 NA Intergenic HERVE-int|LTR|ERV1 100410 NM_001198779 8453 Hs.82919 NM_003591 HPRD:06786 CUL2 - cullin 2 protein-coding 13-PTNLD9-TUMOR_peak_15110 chr13 110790522 110790639 + 5.99683 NA Intergenic CpG 168916 NM_001845 1282 Hs.17441 NM_001845 HPRD:00359 COL4A1 HANAC|ICH|POREN1|arresten collagen, type IV, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_48929 chr7 127033029 127033123 + 5.99047 NA promoter-TSS (NM_176814) promoter-TSS (NM_176814) -309 NM_176814 168850 Hs.159006 NM_176814 HPRD:14112 ZNF800 - zinc finger protein 800 protein-coding 13-PTNLD9-TUMOR_peak_37399 chr3 195632991 195633090 + 5.99047 NA intron (NM_005781, intron 1 of 14) L1ME1|LINE|L1 2840 NM_005781 10188 Hs.518513 NM_005781 HPRD:06104 TNK2 ACK|ACK-1|ACK1|p21cdc42Hs tyrosine kinase, non-receptor, 2 protein-coding 13-PTNLD9-TUMOR_peak_17797 chr15 82737581 82737703 + 5.99047 NA intron (NM_001164465, intron 8 of 9) CpG 14654 NM_001291420 440295 Hs.498322 NM_198181 HPRD:11262 GOLGA6L9 GOLGA6L20 golgin A6 family-like 9 protein-coding 13-PTNLD9-TUMOR_peak_25228 chr19 47731238 47731410 + 5.98919 NA intron (NM_001127241, intron 1 of 2) intron (NM_001127241, intron 1 of 2) -1048 NR_036159 100422832 NR_036159 MIR3191 - microRNA 3191 ncRNA 13-PTNLD9-TUMOR_peak_46692 chr7 1607643 1607895 + 5.98438 NA intron (NM_001134340, intron 2 of 2) intron (NM_001134340, intron 2 of 2) 1860 NM_032302 84262 Hs.446311 NM_032302 HPRD:14404 PSMG3 C7orf48|PAC3 proteasome (prosome, macropain) assembly chaperone 3 protein-coding 13-PTNLD9-TUMOR_peak_1965 chr1 59858939 59859116 + 5.97975 NA intron (NM_001113411, intron 5 of 16) intron (NM_001113411, intron 5 of 16) 83277 NM_001244714 55277 Hs.444301 NM_018291 HPRD:07721 FGGY - FGGY carbohydrate kinase domain containing protein-coding 13-PTNLD9-TUMOR_peak_8581 chr10 127751076 127751250 + 5.97975 NA intron (NM_001288975, intron 14 of 18) intron (NM_001288975, intron 14 of 18) -89321 NR_102707 101410540 Hs.557889 NR_102707 ENSG00000233409 FANK1-AS1 - FANK1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_13721 chr12 107753293 107753434 + 5.97975 NA intron (NM_001018072, intron 1 of 16) intron (NM_001018072, intron 1 of 16) 41166 NM_001018072 121551 Hs.271272 NM_152322 HPRD:12536 BTBD11 ABTB2B BTB (POZ) domain containing 11 protein-coding 13-PTNLD9-TUMOR_peak_55918 chrX 55743945 55744355 + 5.97975 NA promoter-TSS (NM_016656) promoter-TSS (NM_016656) 40 NM_006064 10325 Hs.50282 NM_006064 HPRD:06710 RRAGB RAGB|bA465E19.1 Ras-related GTP binding B protein-coding 13-PTNLD9-TUMOR_peak_40265 chr5 9239438 9239535 + 5.97975 NA intron (NM_003966, intron 5 of 22) intron (NM_003966, intron 5 of 22) -185479 NR_039779 100616326 NR_039779 MIR4636 - microRNA 4636 ncRNA 13-PTNLD9-TUMOR_peak_9157 chr11 14075513 14075613 + 5.97975 NA intron (NM_006108, intron 3 of 15) intron (NM_006108, intron 3 of 15) 91379 NM_006108 10418 Hs.643864 NM_006108 SPON1 VSGP/F-spondin|f-spondin spondin 1, extracellular matrix protein protein-coding 13-PTNLD9-TUMOR_peak_56396 chrX 117686614 117686776 + 5.97975 NA intron (NM_144658, intron 6 of 52) intron (NM_144658, intron 6 of 52) 56823 NM_144658 139818 Hs.368203 NM_144658 HPRD:06492 DOCK11 ACG|ZIZ2|bB128O4.1 dedicator of cytokinesis 11 protein-coding 13-PTNLD9-TUMOR_peak_41247 chr5 72600519 72600617 + 5.97975 NA Intergenic MIR|SINE|MIR 131545 NM_153217 134288 Hs.508588 NM_153217 HPRD:14432 TMEM174 - transmembrane protein 174 protein-coding 13-PTNLD9-TUMOR_peak_19791 chr16 75788094 75788237 + 5.97975 NA Intergenic Intergenic 106530 NM_018975 54386 Hs.301419 NM_018975 HPRD:05452 TERF2IP DRIP5|RAP1 telomeric repeat binding factor 2, interacting protein protein-coding 13-PTNLD9-TUMOR_peak_40474 chr5 21237124 21237253 + 5.97975 NA Intergenic Intergenic -222401 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - glucuronidase, beta pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_8453 chr10 121161391 121161492 + 5.97975 NA intron (NM_005308, intron 4 of 15) MLT1I|LTR|ERVL-MaLR 23957 NR_039829 100616398 NR_039829 MIR4681 - microRNA 4681 ncRNA 13-PTNLD9-TUMOR_peak_56652 chrX 152252290 152252393 + 5.97975 NA Intergenic Intergenic 11544 NM_032882 84968 Hs.533301 NM_032882 HPRD:06637 PNMA6A MA6|PNMA6|PNMA6C paraneoplastic Ma antigen family member 6A protein-coding 13-PTNLD9-TUMOR_peak_28043 chr2 111530979 111531125 + 5.97975 NA intron (NM_001142807, intron 2 of 17) intron (NM_001142807, intron 2 of 17) 40902 NM_001142807 55289 Hs.253320 NM_018308 HPRD:12418 ACOXL - acyl-CoA oxidase-like protein-coding 13-PTNLD9-TUMOR_peak_13698 chr12 106676271 106676405 + 5.97975 NA Intergenic MamRep1161|DNA|TcMar -20231 NM_001286262 255394 Hs.696047 NM_152772 HPRD:17555 TCP11L2 - t-complex 11, testis-specific-like 2 protein-coding 13-PTNLD9-TUMOR_peak_24659 chr19 31908702 31908927 + 5.97975 NA Intergenic Intergenic -68624 NM_020856 57616 Hs.278436 NM_020856 HPRD:18351 TSHZ3 TSH3|ZNF537 teashirt zinc finger homeobox 3 protein-coding 13-PTNLD9-TUMOR_peak_11483 chr11 123278195 123278325 + 5.97975 NA Intergenic Intergenic -26040 NR_039714 100616319 NR_039714 miRBase:MI0016855 MIR4493 - microRNA 4493 ncRNA 13-PTNLD9-TUMOR_peak_12634 chr12 46360423 46360560 + 5.97975 NA intron (NM_004719, intron 1 of 14) L2a|LINE|L2 23910 NM_004719 9169 Hs.210367 NM_004719 SCAF11 CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP SR-related CTD-associated factor 11 protein-coding 13-PTNLD9-TUMOR_peak_40619 chr5 36575743 36575886 + 5.97975 NA Intergenic Charlie10|DNA|hAT-Charlie -30643 NM_001166696 6507 Hs.481918 NM_004172 HPRD:02523 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 (glial high affinity glutamate transporter), member 3 protein-coding 13-PTNLD9-TUMOR_peak_27544 chr2 88797348 88797524 + 5.97975 NA Intergenic Intergenic -26733 NM_152670 200523 Hs.132104 NM_152670 HPRD:08688 TEX37 C2orf51|TSC21 testis expressed 37 protein-coding 13-PTNLD9-TUMOR_peak_15436 chr14 30858942 30859073 + 5.97975 NA Intergenic Intergenic -169322 NM_017769 55632 Hs.509008 NM_017769 HPRD:13851 G2E3 KIAA1333|PHF7B G2/M-phase specific E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_4884 chr1 198850461 198850575 + 5.97975 NA intron (NR_040073, intron 2 of 2) intron (NR_040073, intron 2 of 2) -22236 NR_029626 406995 NR_029626 miRBase:MI0000289 MIR181A1 MIR213|MIRN181A1|MIRN213|hsa-mir-181a-1|mir-213 microRNA 181a-1 ncRNA 13-PTNLD9-TUMOR_peak_26772 chr2 45405234 45405343 + 5.97975 NA intron (NR_033831, intron 4 of 5) L1MC|LINE|L1 76792 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 13-PTNLD9-TUMOR_peak_50382 chr8 25968503 25968598 + 5.97975 NA Intergenic Intergenic -65910 NM_022659 64641 Hs.491292 NM_022659 HPRD:16848 EBF2 COE2|EBF-2|O/E-3|OE-3 early B-cell factor 2 protein-coding 13-PTNLD9-TUMOR_peak_5308 chr1 207483180 207483435 + 5.97975 NA Intergenic Intergenic -11510 NM_000574 1604 Hs.126517 NM_000574 HPRD:00500 CD55 CR|CROM|DAF|TC CD55 molecule, decay accelerating factor for complement (Cromer blood group) protein-coding 13-PTNLD9-TUMOR_peak_6842 chr10 30960088 30960194 + 5.97975 NA Intergenic Intergenic -21062 NR_036438 645954 Hs.408581 NR_036438 ENSG00000234814 SVILP1 - supervillin pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_6520 chr10 13482376 13482686 + 5.97975 NA TTS (NM_001100912) TTS (NM_001100912) 62445 NM_001100912 222389 Hs.498740 NM_152751 HPRD:12570 BEND7 C10orf30 BEN domain containing 7 protein-coding 13-PTNLD9-TUMOR_peak_6765 chr10 28552556 28552671 + 5.97975 NA intron (NM_173496, intron 2 of 18) intron (NM_173496, intron 2 of 18) 18454 NM_173496 143098 Hs.499159 NM_173496 HPRD:14733 MPP7 - membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7) protein-coding 13-PTNLD9-TUMOR_peak_7564 chr10 69991033 69991260 + 5.97975 NA exon (NM_145178, exon 1 of 1) exon (NM_145178, exon 1 of 1) 724 NM_145178 220202 Hs.175396 NM_145178 HPRD:09812 ATOH7 Math5|RNANC|bHLHa13 atonal homolog 7 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_23994 chr19 11279415 11279511 + 5.97975 NA intron (NM_001136191, intron 12 of 12) MIR|SINE|MIR -12979 NM_182513 147841 Hs.381225 NM_182513 SPC24 SPBC24 SPC24, NDC80 kinetochore complex component protein-coding 13-PTNLD9-TUMOR_peak_10448 chr11 69286269 69286363 + 5.97975 NA Intergenic CpG -14013 NR_120543 101928292 Hs.736219 NR_120542 LINC01488 - long intergenic non-protein coding RNA 1488 ncRNA 13-PTNLD9-TUMOR_peak_16224 chr14 73212387 73212481 + 5.97975 NA intron (NM_001280543, intron 4 of 10) intron (NM_001280543, intron 4 of 10) 146923 NM_001280544 8110 Hs.162868 NM_012074 HPRD:03395 DPF3 BAF45C|CERD4 D4, zinc and double PHD fingers, family 3 protein-coding 13-PTNLD9-TUMOR_peak_55592 chrX 17578283 17578424 + 5.97975 NA intron (NM_001291867, intron 1 of 8) intron (NM_001291867, intron 1 of 8) -1105 NR_046632 100873920 Hs.584577 NR_046632 NHS-AS1 - NHS antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_9038 chr11 10614041 10614155 + 5.97975 NA intron (NM_001100163, intron 17 of 20) intron (NM_001100163, intron 17 of 20) -23733 NM_006691 10894 Hs.655332 NM_006691 LYVE1 CRSBP-1|HAR|LYVE-1|XLKD1 lymphatic vessel endothelial hyaluronan receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_14717 chr13 46425854 46425948 + 5.97975 NA promoter-TSS (NM_198849) promoter-TSS (NM_198849) -55 NM_198849 283514 Hs.368483 NM_198849 HPRD:14145 SIAH3 - siah E3 ubiquitin protein ligase family member 3 protein-coding 13-PTNLD9-TUMOR_peak_16297 chr14 75987903 75987997 + 5.97975 NA promoter-TSS (NM_006399) promoter-TSS (NM_006399) -834 NM_006399 10538 Hs.509964 NM_006399 HPRD:09820 BATF B-ATF|BATF1|SFA-2|SFA2 basic leucine zipper transcription factor, ATF-like protein-coding 13-PTNLD9-TUMOR_peak_16550 chr14 99419978 99420078 + 5.97975 NA Intergenic Intergenic 242078 NM_182560 283598 Hs.448754 NM_182560 HPRD:08075 C14orf177 - chromosome 14 open reading frame 177 protein-coding 13-PTNLD9-TUMOR_peak_848 chr1 28471149 28471258 + 5.97975 NA Intergenic Intergenic 32252 NM_000952 5724 Hs.77542 NM_000952 HPRD:01422 PTAFR PAFR platelet-activating factor receptor protein-coding 13-PTNLD9-TUMOR_peak_42812 chr5 158533932 158534026 + 5.97975 NA intron (NR_109890, intron 1 of 2) CpG 6488 NR_109890 101927740 Hs.738721 NR_109890 ENSG00000245812 LOC101927740 - uncharacterized LOC101927740 ncRNA 13-PTNLD9-TUMOR_peak_34367 chr3 43770080 43770192 + 5.97975 NA Intergenic Intergenic 37761 NM_016006 51099 Hs.19385 NM_016006 ABHD5 CDS|CGI58|IECN2|NCIE2 abhydrolase domain containing 5 protein-coding 13-PTNLD9-TUMOR_peak_16306 chr14 76334402 76334496 + 5.97975 NA intron (NM_015072, intron 29 of 31) intron (NM_015072, intron 29 of 31) 113916 NM_003239 7043 Hs.592317 NM_003239 TGFB3 ARVD|ARVD1|RNHF|TGF-beta3 transforming growth factor, beta 3 protein-coding 13-PTNLD9-TUMOR_peak_12211 chr12 13515328 13515428 + 5.97975 NA Intergenic LTR41|LTR|ERVL 14301 NR_036555 283422 Hs.448717 NM_182558 HPRD:08166 C12orf36 - chromosome 12 open reading frame 36 ncRNA 13-PTNLD9-TUMOR_peak_41659 chr5 103176392 103176567 + 5.97975 NA Intergenic Intergenic -277977 NM_031438 83594 Hs.434289 NM_031438 HPRD:10123 NUDT12 - nudix (nucleoside diphosphate linked moiety X)-type motif 12 protein-coding 13-PTNLD9-TUMOR_peak_28938 chr2 163677886 163677988 + 5.97975 NA intron (NM_033272, intron 2 of 15) intron (NM_033272, intron 2 of 15) 17320 NM_173162 90134 Hs.657413 NM_033272 HPRD:16295 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel, subfamily H (eag-related), member 7 protein-coding 13-PTNLD9-TUMOR_peak_8432 chr10 119564021 119564259 + 5.97975 NA Intergenic Intergenic 241974 NM_014904 22841 Hs.173656 NM_014904 HPRD:10548 RAB11FIP2 Rab11-FIP2|nRip11 RAB11 family interacting protein 2 (class I) protein-coding 13-PTNLD9-TUMOR_peak_56568 chrX 141565694 141565884 + 5.97975 NA Intergenic L1HS|LINE|L1 -272713 NM_016249 51438 Hs.123536 NM_016249 HPRD:06632 MAGEC2 CT10|HCA587|MAGEE1 melanoma antigen family C, 2 protein-coding 13-PTNLD9-TUMOR_peak_12616 chr12 44241387 44241519 + 5.97975 NA intron (NM_001286213, intron 2 of 6) intron (NM_001286213, intron 2 of 6) 11789 NM_001286213 84216 Hs.444668 NM_032256 HPRD:13193 TMEM117 - transmembrane protein 117 protein-coding 13-PTNLD9-TUMOR_peak_26918 chr2 52010154 52010262 + 5.97975 NA Intergenic Intergenic -750534 NM_001135659 9378 Hs.637685 NM_004801 HPRD:11858 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 13-PTNLD9-TUMOR_peak_5624 chr1 226005395 226005561 + 5.97975 NA intron (NM_001291163, intron 1 of 8) intron (NM_001291163, intron 1 of 8) -7524 NM_000120 2052 Hs.89649 NM_000120 HPRD:00581 EPHX1 EPHX|EPOX|HYL1|MEH epoxide hydrolase 1, microsomal (xenobiotic) protein-coding 13-PTNLD9-TUMOR_peak_52034 chr8 129678373 129678504 + 5.97975 NA Intergenic Intergenic -101513 NR_121673 101927774 Hs.628730 NR_121672 ENSG00000254275 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 13-PTNLD9-TUMOR_peak_35789 chr3 127680914 127681024 + 5.97975 NA intron (NM_207335, intron 3 of 4) intron (NM_207335, intron 3 of 4) 39067 NM_207335 166348 Hs.132087 NM_207335 HPRD:17001 KBTBD12 KLHDC6 kelch repeat and BTB (POZ) domain containing 12 protein-coding 13-PTNLD9-TUMOR_peak_28725 chr2 151833946 151834064 + 5.97975 NA Intergenic LTR32|LTR|ERVL 284384 NM_198557 375287 Hs.302442 NM_198557 HPRD:10992 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 13-PTNLD9-TUMOR_peak_6332 chr10 4254604 4254844 + 5.97975 NA intron (NR_108040, intron 2 of 2) intron (NR_108040, intron 2 of 2) 31380 NR_108040 100652988 Hs.433011 NR_108040 LINC00702 - long intergenic non-protein coding RNA 702 ncRNA 13-PTNLD9-TUMOR_peak_49379 chr7 140226842 140226962 + 5.97975 NA intron (NM_015689, intron 13 of 17) intron (NM_015689, intron 13 of 17) -47533 NM_001291663 23608 Hs.744883 NM_013446 HPRD:09673 MKRN1 RNF61 makorin ring finger protein 1 protein-coding 13-PTNLD9-TUMOR_peak_39755 chr4 159097391 159097516 + 5.97975 NA Intergenic Intergenic -3251 NM_001031700 51313 Hs.567498 NM_016613 HPRD:13194 FAM198B AD036|C4orf18 family with sequence similarity 198, member B protein-coding 13-PTNLD9-TUMOR_peak_41523 chr5 92527970 92528064 + 5.97975 NA Intergenic Intergenic 379032 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_23475 chr18 73944893 73945030 + 5.97975 NA Intergenic Intergenic 110008 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 13-PTNLD9-TUMOR_peak_32546 chr21 46213344 46213463 + 5.97975 NA intron (NM_003343, intron 1 of 5) intron (NM_003343, intron 1 of 5) 8348 NM_003343 7327 Hs.529420 NM_003343 HPRD:04387 UBE2G2 UBC7 ubiquitin-conjugating enzyme E2G 2 protein-coding 13-PTNLD9-TUMOR_peak_54381 chr9 111453976 111454107 + 5.97975 NA Intergenic Intergenic 164234 NM_006686 10880 Hs.534390 NM_006686 ACTL7B Tact1 actin-like 7B protein-coding 13-PTNLD9-TUMOR_peak_32386 chr21 42839343 42839447 + 5.97975 NA intron (NM_005656, intron 13 of 13) intron (NM_005656, intron 13 of 13) 35418 NM_001282920 4599 Hs.517307 NM_002462 HPRD:00919 MX1 IFI-78K|IFI78|MX|MxA MX dynamin-like GTPase 1 protein-coding 13-PTNLD9-TUMOR_peak_14826 chr13 61340248 61340456 + 5.97975 NA Intergenic Intergenic 93263 NR_047003 101926930 Hs.578045 NR_047003 LINC00378 - long intergenic non-protein coding RNA 378 ncRNA 13-PTNLD9-TUMOR_peak_27302 chr2 74453841 74454084 + 5.97975 NA intron (NM_021196, intron 23 of 25) intron (NM_021196, intron 23 of 25) 28272 NM_006636 10797 Hs.469030 NM_006636 MTHFD2 NMDMC methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase protein-coding 13-PTNLD9-TUMOR_peak_52718 chr9 7081087 7081393 + 5.97975 NA intron (NM_015061, intron 17 of 21) intron (NM_015061, intron 17 of 21) 323599 NM_015061 23081 Hs.709425 NM_015061 HPRD:12016 KDM4C GASC1|JHDM3C|JMJD2C|TDRD14C|bA146B14.1 lysine (K)-specific demethylase 4C protein-coding 13-PTNLD9-TUMOR_peak_11421 chr11 120051691 120051879 + 5.97975 NA Intergenic Intergenic -29962 NM_178507 220323 Hs.445081 NM_178507 OAF NS5ATP13TP2 OAF homolog (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_38630 chr4 77491374 77491506 + 5.97975 NA intron (NM_020859, intron 2 of 10) intron (NM_020859, intron 2 of 10) -3281 NR_039654 100616299 NR_039654 MIR4450 - microRNA 4450 ncRNA 13-PTNLD9-TUMOR_peak_47406 chr7 46208486 46208689 + 5.97975 NA Intergenic Intergenic -247716 NM_001013398 3486 Hs.450230 NM_000598 HPRD:00899 IGFBP3 BP-53|IBP3 insulin-like growth factor binding protein 3 protein-coding 13-PTNLD9-TUMOR_peak_44446 chr6 30379330 30379424 + 5.97975 NA Intergenic LTR13_|LTR|ERVK 66471 NM_001199121 79897 Hs.183232 NM_024839 HPRD:15275 RPP21 C6orf135|CAT60 ribonuclease P/MRP 21kDa subunit protein-coding 13-PTNLD9-TUMOR_peak_34282 chr3 39033971 39034195 + 5.97975 NA Intergenic Intergenic -38941 NM_001287223 11280 Hs.591657 NM_014139 HPRD:05090 SCN11A FEPS3|HSAN7|NAV1.9|NaN|PN5|SCN12A|SNS-2 sodium channel, voltage-gated, type XI, alpha subunit protein-coding 13-PTNLD9-TUMOR_peak_54635 chr9 123459348 123459444 + 5.97975 NA intron (NM_001080497, intron 1 of 5) AluJb|SINE|Alu 17369 NM_001080497 1955 Hs.744903 NM_001080497 ENSG00000106780 MEGF9 EGFL5 multiple EGF-like-domains 9 protein-coding 13-PTNLD9-TUMOR_peak_39382 chr4 137406275 137406436 + 5.97975 NA Intergenic ERVL-B4-int|LTR|ERVL -571520 NR_103763 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 13-PTNLD9-TUMOR_peak_55816 chrX 48416833 48416959 + 5.97975 NA intron (NM_002536, intron 3 of 5) MIR|SINE|MIR -15845 NM_006743 5935 Hs.301404 NM_006743 RBM3 IS1-RNPL|RNPL RNA binding motif (RNP1, RRM) protein 3 protein-coding 13-PTNLD9-TUMOR_peak_14901 chr13 78335069 78335409 + 5.97975 NA exon (NM_144595, exon 5 of 6) exon (NM_144595, exon 5 of 6) 19944 NM_001242869 122060 Hs.349955 NM_144595 HPRD:13400 SLAIN1 C13orf32 SLAIN motif family, member 1 protein-coding 13-PTNLD9-TUMOR_peak_7860 chr10 81141688 81141879 + 5.97975 NA TTS (NM_153367) TTS (NM_153367) 34563 NM_005729 10105 Hs.381072 NM_005729 HPRD:06839 PPIF CYP3|CyP-M|Cyp-D|CypD peptidylprolyl isomerase F protein-coding 13-PTNLD9-TUMOR_peak_39783 chr4 160219702 160219961 + 5.97975 NA intron (NM_014247, intron 1 of 23) intron (NM_014247, intron 1 of 23) 30833 NM_014247 9693 Hs.744884 NM_014247 ENSG00000109756 RAPGEF2 CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|Rap-GEP|nRap GEP Rap guanine nucleotide exchange factor (GEF) 2 protein-coding 13-PTNLD9-TUMOR_peak_25182 chr19 46725318 46725412 + 5.97975 NA intron (NR_046936, intron 3 of 3) intron (NR_046936, intron 3 of 3) -7644 NM_198541 374918 Hs.546554 NM_198541 HPRD:17139 IGFL1 APRG644|UNQ644 IGF-like family member 1 protein-coding 13-PTNLD9-TUMOR_peak_50171 chr8 17715356 17715477 + 5.97975 NA Intergenic AluSx|SINE|Alu 37497 NM_147203 2267 Hs.491143 NM_004467 HPRD:09312 FGL1 HFREP1|HP-041|LFIRE-1|LFIRE1 fibrinogen-like 1 protein-coding 13-PTNLD9-TUMOR_peak_10510 chr11 71291228 71291322 + 5.97975 NA Intergenic Intergenic 2646 NM_001005405 440051 Hs.679617 NM_001005405 HPRD:17248 KRTAP5-11 KRTAP5-5|KRTAP5-6|KRTAP5.11 keratin associated protein 5-11 protein-coding 13-PTNLD9-TUMOR_peak_38403 chr4 52925717 52925868 + 5.97975 NA intron (NR_123728, intron 1 of 12) L2c|LINE|L2 8295 NM_001297608 132671 Hs.527090 NM_145263 HPRD:14050 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 13-PTNLD9-TUMOR_peak_2687 chr1 104738174 104738305 + 5.97975 NA Intergenic Intergenic 122594 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing, apoptosis associated protein 3 pseudogene pseudo 13-PTNLD9-TUMOR_peak_41666 chr5 105433108 105433302 + 5.97975 NA Intergenic Intergenic 913510 NR_104671 102467213 Hs.570923 NR_104671 LOC102467213 - uncharacterized LOC102467213 ncRNA 13-PTNLD9-TUMOR_peak_26900 chr2 48950535 48950651 + 5.97975 NA intron (NM_000233, intron 6 of 10) intron (NM_000233, intron 6 of 10) 32287 NM_000233 3973 Hs.468490 NM_000233 HPRD:01073 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 13-PTNLD9-TUMOR_peak_539 chr1 16767052 16767169 + 5.97975 NA promoter-TSS (NM_001145277) promoter-TSS (NM_001145277) -57 NM_018090 55707 Hs.437385 NM_018090 HPRD:07674 NECAP2 - NECAP endocytosis associated 2 protein-coding 13-PTNLD9-TUMOR_peak_44958 chr6 40989590 40989747 + 5.97975 NA intron (NR_110873, intron 1 of 5) intron (NR_110873, intron 1 of 5) 1351 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 13-PTNLD9-TUMOR_peak_43443 chr6 1953039 1953213 + 5.97975 NA intron (NM_001500, intron 6 of 10) intron (NM_001500, intron 6 of 10) 223099 NM_001253846 2762 Hs.144496 NM_001500 HPRD:11925 GMDS GMD|SDR3E1 GDP-mannose 4,6-dehydratase protein-coding 13-PTNLD9-TUMOR_peak_44910 chr6 39056222 39056358 + 5.97975 NA TTS (NM_002062) TTS (NM_002062) 26575 NM_018322 55776 Hs.58382 NM_018322 HPRD:12892 SAYSD1 C6orf64 SAYSVFN motif domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_50596 chr8 36917732 36917826 + 5.97975 NA Intergenic Intergenic 275937 NM_001031836 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium channel, subfamily U, member 1 protein-coding 13-PTNLD9-TUMOR_peak_16565 chr14 100213315 100213440 + 5.97975 NA Intergenic Intergenic -46368 NM_004434 2009 Hs.12451 NM_004434 HPRD:03613 EML1 ELP79|EMAP|EMAPL|HuEMAP echinoderm microtubule associated protein like 1 protein-coding 13-PTNLD9-TUMOR_peak_17917 chr15 87589113 87589220 + 5.97975 NA Intergenic MLT1H-int|LTR|ERVL-MaLR -530994 NR_026869 145978 Hs.350808 NM_152454 HPRD:08101 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 13-PTNLD9-TUMOR_peak_37725 chr4 4713743 4713879 + 5.97975 NA Intergenic LTR16A|LTR|ERVL -132353 NR_125765 103695434 Hs.550830 NR_125765 LINC01396 - long intergenic non-protein coding RNA 1396 ncRNA 13-PTNLD9-TUMOR_peak_13474 chr12 92945834 92946001 + 5.97975 NA Intergenic Intergenic -123993 NM_001025232 574016 Hs.551199 NM_001025232 ENSG00000205057 CLLU1OS - chronic lymphocytic leukemia up-regulated 1 opposite strand protein-coding 13-PTNLD9-TUMOR_peak_14690 chr13 44848656 44848788 + 5.97975 NA Intergenic Intergenic -78386 NR_107046 102465876 NR_107046 MIR8079 hsa-mir-8079 microRNA 8079 ncRNA 13-PTNLD9-TUMOR_peak_39963 chr4 184492511 184492606 + 5.97975 NA Intergenic Intergenic 65323 NM_001291959 3622 Hs.107153 NM_001564 HPRD:05021 ING2 ING1L|p33ING2 inhibitor of growth family, member 2 protein-coding 13-PTNLD9-TUMOR_peak_10320 chr11 66659751 66659908 + 5.97975 NA intron (NM_001040716, intron 3 of 22) intron (NM_001040716, intron 3 of 22) 15511 NM_022172 5091 Hs.89890 NM_000920 HPRD:02032 PC PCB pyruvate carboxylase protein-coding 13-PTNLD9-TUMOR_peak_25992 chr2 7114171 7114270 + 5.97975 NA intron (NM_014746, intron 2 of 8) intron (NM_014746, intron 2 of 8) -55407 NR_033997 386597 Hs.559010 NR_033997 ENSG00000228203 RNF144A-AS1 - RNF144A antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_16279 chr14 75518167 75518274 + 5.97975 NA promoter-TSS (NM_014381) promoter-TSS (NM_014381) 15 NM_001040108 27030 Hs.436650 NM_014381 HPRD:05094 MLH3 HNPCC7 mutL homolog 3 protein-coding 13-PTNLD9-TUMOR_peak_26317 chr2 24944432 24944526 + 5.97975 NA intron (NM_147233, intron 12 of 20) intron (NM_147233, intron 12 of 20) -71696 NM_001199803 79172 Hs.731569 NM_024322 HPRD:14414 CENPO CENP-O|ICEN-36|MCM21R centromere protein O protein-coding 13-PTNLD9-TUMOR_peak_18882 chr16 28538534 28538628 + 5.97975 NA Intergenic L2a|LINE|L2 11914 NM_012385 26471 Hs.513463 NM_012385 HPRD:17814 NUPR1 COM1|P8 nuclear protein, transcriptional regulator, 1 protein-coding 13-PTNLD9-TUMOR_peak_26187 chr2 15922175 15922367 + 5.97975 NA Intergenic Intergenic 91365 NR_110201 101926966 Hs.502835 NR_110201 ENSG00000231031 LOC101926966 - uncharacterized LOC101926966 ncRNA 13-PTNLD9-TUMOR_peak_38043 chr4 16944850 16944965 + 5.97975 NA Intergenic L1HS|LINE|L1 -44483 NM_001130834 9079 Hs.714330 NM_001290 HPRD:16022 LDB2 CLIM1|LDB1 LIM domain binding 2 protein-coding 13-PTNLD9-TUMOR_peak_15442 chr14 31464295 31464389 + 5.97975 NA intron (NM_014574, intron 1 of 15) intron (NM_014574, intron 1 of 15) 19606 NR_030354 693209 NR_030354 MIR624 MIRN624|hsa-mir-624 microRNA 624 ncRNA 13-PTNLD9-TUMOR_peak_5318 chr1 208281328 208281484 + 5.97975 NA intron (NM_025179, intron 4 of 31) intron (NM_025179, intron 4 of 31) 136259 NM_025179 5362 Hs.497626 NM_025179 HPRD:03033 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 13-PTNLD9-TUMOR_peak_45964 chr6 117770047 117770143 + 5.97975 NA Intergenic L1MB7|LINE|L1 -23077 NM_002944 6098 Hs.1041 NM_002944 HPRD:01295 ROS1 MCF3|ROS|c-ros-1 ROS proto-oncogene 1 , receptor tyrosine kinase protein-coding 13-PTNLD9-TUMOR_peak_18477 chr16 10220777 10220871 + 5.97975 NA intron (NM_000833, intron 3 of 13) intron (NM_000833, intron 3 of 13) 55100 NM_001134408 2903 Hs.411472 NM_000833 HPRD:00698 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate receptor, ionotropic, N-methyl D-aspartate 2A protein-coding 13-PTNLD9-TUMOR_peak_41019 chr5 60921605 60921786 + 5.97975 NA Intergenic CpG -11941 NM_173667 285668 Hs.683866 NM_173667 HPRD:09962 C5orf64 - chromosome 5 open reading frame 64 protein-coding 13-PTNLD9-TUMOR_peak_12777 chr12 51675437 51675583 + 5.97975 NA intron (NM_001290007, intron 12 of 12) L4|LINE|RTE -11308 NM_001031628 57228 Hs.652389 NM_001031628 HPRD:14256 SMAGP hSMAGP small cell adhesion glycoprotein protein-coding 13-PTNLD9-TUMOR_peak_16415 chr14 90379038 90379406 + 5.97975 NA intron (NM_145231, intron 5 of 5) intron (NM_145231, intron 5 of 5) 41679 NM_001284269 90141 Hs.123232 NM_145231 HPRD:16609 EFCAB11 C14orf143 EF-hand calcium binding domain 11 protein-coding 13-PTNLD9-TUMOR_peak_3045 chr1 118301513 118301676 + 5.97975 NA Intergenic Intergenic 152990 NM_017709 54855 Hs.356216 NM_017709 HPRD:13312 FAM46C - family with sequence similarity 46, member C protein-coding 13-PTNLD9-TUMOR_peak_19464 chr16 58010289 58010443 + 5.97975 NA promoter-TSS (NM_199046) promoter-TSS (NM_199046) 27 NM_199456 374739 Hs.132976 NM_199046 TEPP - testis, prostate and placenta expressed protein-coding 13-PTNLD9-TUMOR_peak_18428 chr16 8555409 8555591 + 5.97975 NA Intergenic Intergenic 32328 NM_001290098 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 13-PTNLD9-TUMOR_peak_13280 chr12 69921710 69921939 + 5.97975 NA intron (NM_001278351, intron 2 of 10) intron (NM_001278351, intron 2 of 10) -56679 NR_037476 100500868 NR_037476 MIR3913-2 - microRNA 3913-2 ncRNA 13-PTNLD9-TUMOR_peak_14950 chr13 94350401 94350600 + 5.97975 NA intron (NM_005708, intron 2 of 8) intron (NM_005708, intron 2 of 8) 160226 NR_046536 100873973 Hs.615939 NR_046536 GPC6-AS2 - GPC6 antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_53055 chr9 33687865 33687993 + 5.97975 NA TTS (NR_103745) TTS (NR_103745) -10511 NR_023917 11191 Hs.493716 NR_023917 ENSG00000237984 PTENP1 PTEN-rs|PTEN2|PTENpg1|PTH2|psiPTEN phosphatase and tensin homolog pseudogene 1 (functional) pseudo 13-PTNLD9-TUMOR_peak_50508 chr8 29533175 29533269 + 5.97975 NA Intergenic Intergenic 72403 NR_026765 619351 Hs.566911 NR_026765 ENSG00000251191 LINC00589 C8orf75 long intergenic non-protein coding RNA 589 ncRNA 13-PTNLD9-TUMOR_peak_5356 chr1 212434360 212434525 + 5.97975 NA Intergenic Intergenic -24437 NM_006243 5525 Hs.744012 NM_006243 HPRD:03384 PPP2R5A B56A|PR61A protein phosphatase 2, regulatory subunit B', alpha protein-coding 13-PTNLD9-TUMOR_peak_42166 chr5 134896627 134896723 + 5.97975 NA Intergenic Intergenic 18294 NM_004887 9547 Hs.483444 NM_004887 HPRD:16049 CXCL14 BMAC|BRAK|KEC|KS1|MIP-2g|MIP2G|NJAC|SCYB14 chemokine (C-X-C motif) ligand 14 protein-coding 13-PTNLD9-TUMOR_peak_15925 chr14 59950545 59950813 + 5.97975 NA promoter-TSS (NM_001098625) promoter-TSS (NM_001098625) 394 NM_144581 112849 Hs.729061 NM_144581 HPRD:08065 L3HYPDH C14orf149 L-3-hydroxyproline dehydratase (trans-) protein-coding 13-PTNLD9-TUMOR_peak_41428 chr5 81075000 81075131 + 5.97975 NA Intergenic LFSINE_Vert|SINE|SINE -27993 NM_001256736 23635 Hs.102735 NM_012446 SSBP2 HSPC116|SOSS-B2 single-stranded DNA binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_26153 chr2 12272167 12272496 + 5.97975 NA TTS (NR_110197) TTS (NR_110197) 125089 NR_110196 100506457 Hs.197824 NR_110196 ENSG00000224184 LOC100506457 - uncharacterized LOC100506457 ncRNA 13-PTNLD9-TUMOR_peak_55552 chrX 13687417 13687547 + 5.97975 NA Intergenic Intergenic 16172 NM_152634 170082 Hs.222855 NM_152634 ENSG00000176896 TCEANC - transcription elongation factor A (SII) N-terminal and central domain containing protein-coding 13-PTNLD9-TUMOR_peak_44891 chr6 37836351 37836533 + 5.97975 NA intron (NM_021943, intron 1 of 5) intron (NM_021943, intron 1 of 5) 49135 NM_021943 60685 Hs.36959 NM_021943 HPRD:12121 ZFAND3 TEX27 zinc finger, AN1-type domain 3 protein-coding 13-PTNLD9-TUMOR_peak_51650 chr8 116990699 116990798 + 5.97975 NA intron (NR_046215, intron 7 of 13) AmnSINE1|SINE|Deu -309493 NM_014112 7227 Hs.657018 NM_014112 HPRD:05091 TRPS1 GC79|LGCR trichorhinophalangeal syndrome I protein-coding 13-PTNLD9-TUMOR_peak_51954 chr8 127711343 127711437 + 5.97975 NA Intergenic L1PA16|LINE|L1 -140679 NM_174911 157638 Hs.741352 NM_174911 HPRD:11403 FAM84B BCMP101|NSE2 family with sequence similarity 84, member B protein-coding 13-PTNLD9-TUMOR_peak_17053 chr15 39303428 39303647 + 5.97975 NA Intergenic LTR14C|LTR|ERVK -239348 NM_207445 400360 Hs.376109 NM_207445 HPRD:13437 C15orf54 - chromosome 15 open reading frame 54 protein-coding 13-PTNLD9-TUMOR_peak_16516 chr14 96712930 96713029 + 5.97975 NA Intergenic Intergenic -9568 NM_000710 623 Hs.525572 NM_000710 HPRD:02639 BDKRB1 B1BKR|B1R|BDKRB2|BKB1R|BKR1|BRADYB1 bradykinin receptor B1 protein-coding 13-PTNLD9-TUMOR_peak_5511 chr1 223505465 223505587 + 5.97975 NA intron (NM_001037175, intron 2 of 5) intron (NM_001037175, intron 2 of 5) 32018 NM_017982 55061 Hs.497841 NM_017982 HPRD:07641 SUSD4 PRO222 sushi domain containing 4 protein-coding 13-PTNLD9-TUMOR_peak_10045 chr11 61968990 61969084 + 5.97975 NA Intergenic Intergenic -7103 NM_002407 4246 Hs.97644 NM_002407 HPRD:05096 SCGB2A1 LPHC|LPNC|MGB2|UGB3 secretoglobin, family 2A, member 1 protein-coding 13-PTNLD9-TUMOR_peak_5890 chr1 234451142 234451262 + 5.97975 NA intron (NM_001300845, intron 3 of 6) MIRb|SINE|MIR 8989 NR_039818 100616380 NR_039818 MIR4671 - microRNA 4671 ncRNA 13-PTNLD9-TUMOR_peak_43195 chr5 176843497 176843656 + 5.97975 NA Intergenic MIRb|SINE|MIR -6999 NM_000505 2161 Hs.1321 NM_000505 HPRD:01992 F12 HAE3|HAEX|HAF coagulation factor XII (Hageman factor) protein-coding 13-PTNLD9-TUMOR_peak_7981 chr10 90876090 90876198 + 5.97975 NA Intergenic Intergenic -52976 NR_039827 100616192 NR_039827 miRBase:MI0017311 MIR4679-2 - microRNA 4679-2 ncRNA 13-PTNLD9-TUMOR_peak_13410 chr12 81096781 81096877 + 5.97975 NA Intergenic Intergenic -4579 NM_002469 4618 Hs.35937 NM_002469 HPRD:01169 MYF6 CNM3|MRF4|bHLHc4|myf-6 myogenic factor 6 (herculin) protein-coding 13-PTNLD9-TUMOR_peak_40627 chr5 36870687 36870799 + 5.97975 NA TTS (NR_046262) TTS (NR_046262) 6053 NR_046262 646719 Hs.355684 NR_046262 LOC646719 - uncharacterized LOC646719 ncRNA 13-PTNLD9-TUMOR_peak_41048 chr5 63461645 63462059 + 5.97975 NA intron (NM_001113561, intron 1 of 7) CpG 181 NM_178532 285671 Hs.657843 NM_178532 HPRD:15263 RNF180 - ring finger protein 180 protein-coding 13-PTNLD9-TUMOR_peak_22899 chr18 31336305 31336410 + 5.97975 NA Intergenic Intergenic 177816 NM_030632 80816 Hs.464876 NM_030632 ENSG00000141431 ASXL3 BRPS|KIAA1713 additional sex combs like transcriptional regulator 3 protein-coding 13-PTNLD9-TUMOR_peak_9401 chr11 29959006 29959287 + 5.97975 NA Intergenic LTR42|LTR|ERVL 79431 NM_002233 3739 Hs.592002 NM_002233 HPRD:01444 KCNA4 HBK4|HK1|HPCN2|HUKII|KCNA4L|KCNA8|KV1.4|PCN2 potassium voltage-gated channel, shaker-related subfamily, member 4 protein-coding 13-PTNLD9-TUMOR_peak_41643 chr5 102544243 102544438 + 5.97975 NA Intergenic L1M7|LINE|L1 -50102 NM_033211 90355 Hs.482976 NM_033211 HPRD:12383 C5orf30 - chromosome 5 open reading frame 30 protein-coding 13-PTNLD9-TUMOR_peak_50413 chr8 26713461 26713555 + 5.97975 NA intron (NM_033303, intron 1 of 2) intron (NM_033303, intron 1 of 2) 9414 NM_033304 148 Hs.709175 NM_000680 HPRD:00081 ADRA1A ADRA1C|ADRA1L1|ALPHA1AAR adrenoceptor alpha 1A protein-coding 13-PTNLD9-TUMOR_peak_15405 chr14 25148252 25148346 + 5.97975 NA Intergenic Intergenic -44867 NM_004131 3002 Hs.1051 NM_004131 HPRD:00476 GZMB CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1) protein-coding 13-PTNLD9-TUMOR_peak_16491 chr14 94577017 94577122 + 5.97975 NA promoter-TSS (NM_001288958) promoter-TSS (NM_001288958) -10 NM_001288954 3429 Hs.532634 NM_005532 HPRD:02479 IFI27 FAM14D|ISG12|ISG12A|P27 interferon, alpha-inducible protein 27 protein-coding 13-PTNLD9-TUMOR_peak_34310 chr3 40179348 40179452 + 5.97975 NA intron (NM_001284426, intron 1 of 14) intron (NM_001284426, intron 1 of 14) 37898 NM_001284426 25924 Hs.594535 NM_015460 HPRD:14796 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 13-PTNLD9-TUMOR_peak_54894 chr9 132236193 132236406 + 5.97975 NA Intergenic L2c|LINE|L2 -14640 NR_038955 100506190 Hs.529860 NR_038955 LINC00963 - long intergenic non-protein coding RNA 963 ncRNA 13-PTNLD9-TUMOR_peak_20164 chr16 90014479 90014837 + 5.97975 NA promoter-TSS (NM_001242821) promoter-TSS (NM_001242821) -481 NM_001242816 54849 Hs.62771 NM_017702 HPRD:07882 DEF8 - differentially expressed in FDCP 8 homolog (mouse) protein-coding 13-PTNLD9-TUMOR_peak_17394 chr15 61097342 61097483 + 5.97975 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 123644 NR_120318 100996876 Hs.511626 NR_120318 LOC100996876 - uncharacterized LOC100996876 ncRNA 13-PTNLD9-TUMOR_peak_51005 chr8 58970330 58970496 + 5.97975 NA intron (NM_147189, intron 3 of 4) MIR|SINE|MIR 63300 NM_147189 90362 Hs.154652 NM_147189 HPRD:14609 FAM110B C8orf72 family with sequence similarity 110, member B protein-coding 13-PTNLD9-TUMOR_peak_32233 chr21 36648252 36648374 + 5.97975 NA Intergenic LTR81AB|LTR|Gypsy -226718 NM_001754 861 Hs.149261 NM_001754 HPRD:01043 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBFA2|EVI-1|PEBP2aB runt-related transcription factor 1 protein-coding 13-PTNLD9-TUMOR_peak_10601 chr11 73577814 73577969 + 5.97975 NA Intergenic Intergenic -9853 NM_001267806 80227 Hs.525017 NM_025155 HPRD:07761 PAAF1 PAAF|Rpn14|WDR71 proteasomal ATPase-associated factor 1 protein-coding 13-PTNLD9-TUMOR_peak_41135 chr5 68195112 68195293 + 5.97975 NA Intergenic Intergenic -194574 NM_001251969 64924 Hs.631975 NM_022902 HPRD:06381 SLC30A5 ZNT5|ZNTL1|ZTL1|ZnT-5 solute carrier family 30 (zinc transporter), member 5 protein-coding 13-PTNLD9-TUMOR_peak_50560 chr8 32103859 32104025 + 5.97975 NA intron (NM_013962, intron 1 of 4) MER31-int|LTR|ERV1 -194320 NR_047475 100874286 Hs.147060 NR_047475 NRG1-IT3 - NRG1 intronic transcript 3 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_22886 chr18 29888877 29888971 + 5.97975 NA intron (NM_001242409, intron 3 of 5) intron (NM_001242409, intron 3 of 5) 118937 NM_005925 4225 Hs.194777 NM_005925 HPRD:02667 MEP1B - meprin A, beta protein-coding 13-PTNLD9-TUMOR_peak_8517 chr10 124275398 124275551 + 5.97975 NA Intergenic Intergenic -44707 NM_017579 1755 Hs.279611 NM_004406 HPRD:03575 DMBT1 GP340|muclin deleted in malignant brain tumors 1 protein-coding 13-PTNLD9-TUMOR_peak_18557 chr16 13766169 13766360 + 5.97975 NA Intergenic Intergenic -247750 NM_005236 2072 Hs.567265 NM_005236 HPRD:00594 ERCC4 ERCC11|FANCQ|RAD1|XPF excision repair cross-complementation group 4 protein-coding 13-PTNLD9-TUMOR_peak_32245 chr21 37277788 37277886 + 5.97975 NA Intergenic Intergenic 99128 NR_110418 101928269 Hs.589909 NR_110418 ENSG00000159216 LOC101928269 - uncharacterized LOC101928269 ncRNA 13-PTNLD9-TUMOR_peak_26728 chr2 43478453 43478566 + 5.97975 NA intron (NM_022065, intron 36 of 37) intron (NM_022065, intron 36 of 37) 24159 NR_027251 100129726 Hs.194480 NM_178529 LINC01126 - long intergenic non-protein coding RNA 1126 ncRNA 13-PTNLD9-TUMOR_peak_7966 chr10 90188419 90188605 + 5.97975 NA intron (NM_001031709, intron 4 of 6) intron (NM_001031709, intron 4 of 6) 154570 NM_018363 55328 Hs.149849 NM_018363 HPRD:07742 RNLS C10orf59|RENALASE renalase, FAD-dependent amine oxidase protein-coding 13-PTNLD9-TUMOR_peak_12846 chr12 52945532 52945674 + 5.97975 NA intron (NM_033448, intron 1 of 8) intron (NM_033448, intron 1 of 8) 1328 NM_033448 112802 Hs.660007 NM_033448 HPRD:09745 KRT71 HYPT13|K6IRS1|KRT6IRS|KRT6IRS1 keratin 71 protein-coding 13-PTNLD9-TUMOR_peak_21713 chr17 60803350 60803526 + 5.97975 NA intron (NM_001100875, intron 6 of 10) intron (NM_001100875, intron 6 of 10) 4580 NR_036146 100422923 NR_036146 MIR548W - microRNA 548w ncRNA 13-PTNLD9-TUMOR_peak_51776 chr8 122044132 122044255 + 5.97975 NA Intergenic Intergenic -219884 NM_021021 6641 Hs.46701 NM_021021 HPRD:02490 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1) protein-coding 13-PTNLD9-TUMOR_peak_52649 chr9 3732773 3732867 + 5.97975 NA Intergenic Intergenic 64734 NR_121586 101929302 Hs.122828 NR_121586 RFX3-AS1 - RFX3 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_158 chr1 3229823 3229926 + 5.97975 NA intron (NM_022114, intron 3 of 16) intron (NM_022114, intron 3 of 16) -141273 NM_014448 27237 Hs.87435 NM_014448 HPRD:12478 ARHGEF16 GEF16|NBR Rho guanine nucleotide exchange factor (GEF) 16 protein-coding 13-PTNLD9-TUMOR_peak_33026 chr22 27530492 27530604 + 5.97975 NA Intergenic MIRc|SINE|MIR 231293 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000223704 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 13-PTNLD9-TUMOR_peak_35424 chr3 113687981 113688091 + 5.97975 NA intron (NM_020817, intron 16 of 16) MSTB1|LTR|ERVL-MaLR 21288 NM_173570 254887 Hs.21902 NM_173570 HPRD:15717 ZDHHC23 NIDD zinc finger, DHHC-type containing 23 protein-coding 13-PTNLD9-TUMOR_peak_43719 chr6 9225727 9225876 + 5.97975 NA Intergenic Intergenic 573359 NR_004855 728655 Hs.214343 NR_004855 ENSG00000251164 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 13-PTNLD9-TUMOR_peak_8361 chr10 114886503 114886597 + 5.97975 NA intron (NM_001146283, intron 5 of 12) GC_rich|Low_complexity|Low_complexity 176541 NM_001146286 6934 Hs.593995 NM_030756 HPRD:03751 TCF7L2 TCF-4|TCF4 transcription factor 7-like 2 (T-cell specific, HMG-box) protein-coding 13-PTNLD9-TUMOR_peak_6764 chr10 28366813 28366970 + 5.97975 NA intron (NM_173496, intron 14 of 18) MIRb|SINE|MIR -78907 NM_018076 55130 Hs.127530 NM_018076 HPRD:10663 ARMC4 CILD23 armadillo repeat containing 4 protein-coding 13-PTNLD9-TUMOR_peak_44878 chr6 37592849 37592951 + 5.97975 NA Intergenic Intergenic -69702 NR_039669 100616413 NR_039669 miRBase:MI0016810 MIR4462 - microRNA 4462 ncRNA 13-PTNLD9-TUMOR_peak_5386 chr1 214668203 214668297 + 5.97975 NA intron (NM_005401, intron 1 of 18) intron (NM_005401, intron 1 of 18) 56774 NM_005401 5784 Hs.193557 NM_005401 HPRD:04402 PTPN14 PEZ|PTP36 protein tyrosine phosphatase, non-receptor type 14 protein-coding 13-PTNLD9-TUMOR_peak_53668 chr9 77796837 77797021 + 5.97975 NA Intergenic MLT1E2|LTR|ERVL-MaLR 93531 NM_012383 26578 Hs.494192 NM_012383 HPRD:17808 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 13-PTNLD9-TUMOR_peak_40898 chr5 55322698 55322875 + 5.97975 NA Intergenic Intergenic 31791 NR_102755 441072 Hs.482141 NR_102755 ENSG00000227908 FLJ31104 - uncharacterized LOC441072 ncRNA 13-PTNLD9-TUMOR_peak_3053 chr1 118809155 118809318 + 5.97975 NA Intergenic Intergenic -81388 NM_206996 200162 Hs.528821 NM_206996 HPRD:10146 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 13-PTNLD9-TUMOR_peak_17893 chr15 85855687 85855964 + 5.97975 NA Intergenic L1MCc|LINE|L1 -68022 NM_007200 11214 Hs.459211 NM_006738 HPRD:05253 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A kinase (PRKA) anchor protein 13 protein-coding 13-PTNLD9-TUMOR_peak_55796 chrX 47382897 47383029 + 5.97975 NA Intergenic CpG -37536 NM_001654 369 Hs.446641 NM_001654 HPRD:02405 ARAF A-RAF|ARAF1|PKS2|RAFA1 A-Raf proto-oncogene, serine/threonine kinase protein-coding 13-PTNLD9-TUMOR_peak_32022 chr21 26283286 26283380 + 5.97975 NA intron (NR_046198, intron 2 of 3) intron (NR_046198, intron 2 of 3) 70469 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LOC339622 - uncharacterized LOC339622 ncRNA 13-PTNLD9-TUMOR_peak_9394 chr11 29302148 29302244 + 5.97975 NA Intergenic Intergenic 736381 NM_002233 3739 Hs.592002 NM_002233 HPRD:01444 KCNA4 HBK4|HK1|HPCN2|HUKII|KCNA4L|KCNA8|KV1.4|PCN2 potassium voltage-gated channel, shaker-related subfamily, member 4 protein-coding 13-PTNLD9-TUMOR_peak_51180 chr8 79357333 79357480 + 5.97975 NA Intergenic L1PA5|LINE|L1 -70930 NM_181839 5569 Hs.433700 NM_006823 HPRD:05828 PKIA PRKACN1 protein kinase (cAMP-dependent, catalytic) inhibitor alpha protein-coding 13-PTNLD9-TUMOR_peak_20666 chr17 21002687 21002783 + 5.97975 NA Intergenic Intergenic 23866 NR_110896 101060544 Hs.585812 NR_110895 ENSG00000236819 HP08942 - uncharacterized LOC101060544 ncRNA 13-PTNLD9-TUMOR_peak_9623 chr11 44039341 44039439 + 5.97975 NA Intergenic Intergenic -30141 NM_001031854 390110 Hs.558851 NM_001031854 ENSG00000205126 ACCSL - 1-aminocyclopropane-1-carboxylate synthase homolog (Arabidopsis)(non-functional)-like protein-coding 13-PTNLD9-TUMOR_peak_30162 chr2 240455782 240455907 + 5.97975 NA Intergenic Intergenic -133201 NM_006037 9759 Hs.20516 NM_006037 HPRD:05610 HDAC4 AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA histone deacetylase 4 protein-coding 13-PTNLD9-TUMOR_peak_56417 chrX 119005626 119005769 + 5.97975 NA promoter-TSS (NM_006978) promoter-TSS (NM_006978) -37 NM_004541 4694 Hs.534168 NM_004541 NDUFA1 CI-MWFE|MWFE|ZNF183 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 1, 7.5kDa protein-coding 13-PTNLD9-TUMOR_peak_56338 chrX 109070746 109070902 + 5.97975 NA Intergenic Intergenic -94203 NM_004458 2182 Hs.268785 NM_004458 HPRD:02152 ACSL4 ACS4|FACL4|LACS4|MRX63|MRX68 acyl-CoA synthetase long-chain family member 4 protein-coding 13-PTNLD9-TUMOR_peak_28535 chr2 134594301 134594489 + 5.97975 NA Intergenic Intergenic -268364 NM_207363 344148 Hs.537329 NM_207363 HPRD:16936 NCKAP5 ERIH1|ERIH2|NAP5 NCK-associated protein 5 protein-coding 13-PTNLD9-TUMOR_peak_13451 chr12 89319781 89319956 + 5.97975 NA Intergenic L2a|LINE|L2 93601 NR_038385 728084 Hs.132563 NR_038385 ENSG00000246363 LOC728084 - uncharacterized LOC728084 ncRNA 13-PTNLD9-TUMOR_peak_6878 chr10 32401125 32401219 + 5.97975 NA Intergenic Intergenic -55801 NM_004521 3799 Hs.327736 NM_004521 HPRD:07214 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 13-PTNLD9-TUMOR_peak_45953 chr6 116708640 116708817 + 5.97975 NA intron (NM_013352, intron 1 of 5) intron (NM_013352, intron 1 of 5) 16618 NM_013352 29940 Hs.458358 NM_013352 HPRD:05807 DSE DSEP|DSEPI|EDSMC2|SART-2|SART2 dermatan sulfate epimerase protein-coding 13-PTNLD9-TUMOR_peak_38237 chr4 41362456 41362662 + 5.97975 NA promoter-TSS (NM_001112718) promoter-TSS (NM_001112718) -243 NM_014988 22998 Hs.335163 NM_014988 HPRD:11125 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 13-PTNLD9-TUMOR_peak_50927 chr8 53022086 53022180 + 5.97975 NA Intergenic Intergenic -210387 NM_001286783 115294 Hs.671268 NM_052937 HPRD:08313 PCMTD1 - protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_6419 chr10 7561344 7561566 + 5.97975 NA Intergenic Tigger3a|DNA|TcMar-Tigger 100181 NM_032817 80760 Hs.498586 NM_030569 HPRD:07865 ITIH5 ITI-HC5 inter-alpha-trypsin inhibitor heavy chain family, member 5 protein-coding 13-PTNLD9-TUMOR_peak_50069 chr8 10659798 10659892 + 5.97975 NA intron (NM_001284356, intron 5 of 5) intron (NM_001284356, intron 5 of 5) 23108 NR_031711 100302166 NR_031711 MIR1322 MIRN1322|hsa-mir-1322 microRNA 1322 ncRNA 13-PTNLD9-TUMOR_peak_26218 chr2 17810118 17810251 + 5.97975 NA intron (NM_003385, intron 2 of 3) intron (NM_003385, intron 2 of 3) 88377 NM_003385 7447 Hs.444212 NM_003385 HPRD:02890 VSNL1 HLP3|HPCAL3|HUVISL1|VILIP|VILIP-1 visinin-like 1 protein-coding 13-PTNLD9-TUMOR_peak_14541 chr13 31366829 31367025 + 5.97975 NA Intergenic Intergenic -10416 NR_047012 100874158 Hs.577982 NR_047012 ENSG00000237879 LINC00398 - long intergenic non-protein coding RNA 398 ncRNA 13-PTNLD9-TUMOR_peak_6854 chr10 31379885 31380087 + 5.97975 NA Intergenic Intergenic -59120 NM_001143767 220929 Hs.660642 NM_182755 HPRD:11247 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 13-PTNLD9-TUMOR_peak_22232 chr17 78518571 78518670 + 5.97975 NA promoter-TSS (NM_001163034) promoter-TSS (NM_001163034) -5 NM_020761 57521 Hs.133044 NM_020761 HPRD:06184 RPTOR KOG1|Mip1 regulatory associated protein of MTOR, complex 1 protein-coding 13-PTNLD9-TUMOR_peak_51013 chr8 59827300 59827450 + 5.97975 NA intron (NM_014729, intron 3 of 8) L1PA2|LINE|L1 204392 NM_014729 9760 Hs.491805 NM_014729 HPRD:12113 TOX TOX1 thymocyte selection-associated high mobility group box protein-coding 13-PTNLD9-TUMOR_peak_13471 chr12 92029042 92029168 + 5.97975 NA Intergenic LTR12C|LTR|ERV1 -452299 NM_001920 1634 Hs.156316 NM_001920 HPRD:00501 DCN CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B decorin protein-coding 13-PTNLD9-TUMOR_peak_11305 chr11 115944724 115944915 + 5.97975 NA Intergenic Intergenic -313901 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 13-PTNLD9-TUMOR_peak_13370 chr12 75905367 75905499 + 5.97975 NA promoter-TSS (NM_007043) promoter-TSS (NM_007043) -15 NM_007043 11103 Hs.645517 NM_007043 HPRD:11027 KRR1 HRB2|RIP-1 KRR1, small subunit (SSU) processome component, homolog (yeast) protein-coding 13-PTNLD9-TUMOR_peak_30896 chr20 34605533 34605805 + 5.97975 NA intron (NM_001207076, intron 10 of 10) L3|LINE|CR1 33213 NR_027451 647979 Hs.743232 NR_027451 ENSG00000260032 LINC00657 - long intergenic non-protein coding RNA 657 ncRNA 13-PTNLD9-TUMOR_peak_34220 chr3 33402108 33402211 + 5.97975 NA intron (NM_012157, intron 4 of 14) intron (NM_012157, intron 4 of 14) 79711 NM_014517 7342 Hs.729120 NM_014517 HPRD:10291 UBP1 LBP-1B|LBP-1a|LBP1A|LBP1B upstream binding protein 1 (LBP-1a) protein-coding 13-PTNLD9-TUMOR_peak_13710 chr12 107388752 107388864 + 5.97975 NA intron (NM_004075, intron 10 of 12) intron (NM_004075, intron 10 of 12) -7864 NM_001033050 80298 Hs.5009 NM_025198 HPRD:17431 MTERF2 MTERFD3|mTERFL mitochondrial transcription termination factor 2 protein-coding 13-PTNLD9-TUMOR_peak_16895 chr15 30136042 30136148 + 5.97975 NA intron (NM_001301025, intron 2 of 28) L2a|LINE|L2 -21389 NM_003257 7082 Hs.743990 NM_003257 HPRD:03002 TJP1 ZO-1 tight junction protein 1 protein-coding 13-PTNLD9-TUMOR_peak_52077 chr8 131377014 131377130 + 5.97975 NA intron (NM_001247996, intron 2 of 30) intron (NM_001247996, intron 2 of 30) -68293 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_12210 chr12 13431274 13431368 + 5.97975 NA Intergenic Intergenic 81719 NM_001423 2012 Hs.719042 NM_001423 HPRD:11892 EMP1 CL-20|EMP-1|TMP epithelial membrane protein 1 protein-coding 13-PTNLD9-TUMOR_peak_39325 chr4 129375498 129375647 + 5.97975 NA Intergenic Intergenic -165588 NM_006320 10424 Hs.507910 NM_006320 HPRD:09665 PGRMC2 DG6|PMBP progesterone receptor membrane component 2 protein-coding 13-PTNLD9-TUMOR_peak_17783 chr15 81426515 81426663 + 5.97975 NA promoter-TSS (NM_173528) promoter-TSS (NM_173528) -55 NM_173528 161502 Hs.130979 NM_173528 HPRD:08243 C15orf26 - chromosome 15 open reading frame 26 protein-coding 13-PTNLD9-TUMOR_peak_7996 chr10 92079308 92079584 + 5.97975 NA Intergenic Intergenic 221116 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LOC101926942 - uncharacterized LOC101926942 ncRNA 13-PTNLD9-TUMOR_peak_54634 chr9 123417429 123417523 + 5.97975 NA intron (NM_001080497, intron 2 of 5) Tigger3b|DNA|TcMar-Tigger 59289 NM_001080497 1955 Hs.744903 NM_001080497 ENSG00000106780 MEGF9 EGFL5 multiple EGF-like-domains 9 protein-coding 13-PTNLD9-TUMOR_peak_41902 chr5 124271736 124271834 + 5.97975 NA Intergenic MER21C|LTR|ERVL -100739 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 13-PTNLD9-TUMOR_peak_4168 chr1 161762685 161762779 + 5.97975 NA intron (NM_007348, intron 6 of 15) intron (NM_007348, intron 6 of 15) 26698 NM_007348 22926 Hs.492740 NM_007348 HPRD:16118 ATF6 ATF6A activating transcription factor 6 protein-coding 13-PTNLD9-TUMOR_peak_45559 chr6 79862206 79862319 + 5.97975 NA Intergenic Intergenic -74251 NM_017934 55023 Hs.511817 NM_017934 HPRD:10152 PHIP BRWD2|DCAF14|WDR11|ndrp pleckstrin homology domain interacting protein protein-coding 13-PTNLD9-TUMOR_peak_12741 chr12 50339437 50339550 + 5.97975 NA Intergenic LTR85c|LTR|Gypsy? -5031 NM_000486 359 Hs.130730 NM_000486 HPRD:00141 AQP2 AQP-CD|WCH-CD aquaporin 2 (collecting duct) protein-coding 13-PTNLD9-TUMOR_peak_33040 chr22 28148927 28149118 + 5.97975 NA intron (NM_002430, intron 1 of 1) intron (NM_002430, intron 1 of 1) 48464 NM_002430 4330 Hs.268515 NM_002430 HPRD:08862 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 meningioma (disrupted in balanced translocation) 1 protein-coding 13-PTNLD9-TUMOR_peak_45890 chr6 111003759 111003903 + 5.97975 NA intron (NM_001300964, intron 2 of 12) intron (NM_001300964, intron 2 of 12) -131993 NM_001287215 262 Hs.159118 NM_001634 HPRD:01622 AMD1 ADOMETDC|AMD|SAMDC adenosylmethionine decarboxylase 1 protein-coding 13-PTNLD9-TUMOR_peak_48429 chr7 98314936 98315049 + 5.97975 NA Intergenic L2a|LINE|L2 68395 NM_002523 4885 Hs.3281 NM_002523 HPRD:02853 NPTX2 NARP|NP-II|NP2 neuronal pentraxin II protein-coding 13-PTNLD9-TUMOR_peak_11826 chr12 2692305 2692460 + 5.97975 NA intron (NM_001129832, intron 15 of 47) intron (NM_001129832, intron 15 of 47) 89004 NR_046579 100874235 Hs.667644 NR_046579 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_54961 chr9 135457546 135457645 + 5.97975 NA promoter-TSS (NM_020064) promoter-TSS (NM_020064) -398 NM_020064 56751 Hs.283809 NM_020064 HPRD:05554 BARHL1 - BarH-like homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_51202 chr8 81963004 81963098 + 5.97975 NA intron (NM_018440, intron 2 of 8) intron (NM_018440, intron 2 of 8) 61252 NM_018440 55824 Hs.266175 NM_018440 HPRD:05772 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 13-PTNLD9-TUMOR_peak_34242 chr3 36486575 36486669 + 5.97975 NA intron (NM_001292049, intron 2 of 8) intron (NM_001292049, intron 2 of 8) 64643 NM_003149 6769 Hs.56045 NM_003149 HPRD:11890 STAC STAC1 SH3 and cysteine rich domain protein-coding 13-PTNLD9-TUMOR_peak_55521 chrX 9879742 9879845 + 5.97975 NA intron (NM_001649, intron 5 of 9) intron (NM_001649, intron 5 of 9) -55605 NM_001195081 100288814 Hs.722001 NM_001195081 LOC100288814 - uncharacterized LOC100288814 protein-coding 13-PTNLD9-TUMOR_peak_56189 chrX 77908847 77909093 + 5.97975 NA Intergenic Intergenic 5855 NM_152694 203430 Hs.134873 NM_152694 HPRD:06756 ZCCHC5 Mar3|Mart3|ZHC5 zinc finger, CCHC domain containing 5 protein-coding 13-PTNLD9-TUMOR_peak_32227 chr21 36522133 36522269 + 5.97975 NA Intergenic Intergenic -100606 NM_001754 861 Hs.149261 NM_001754 HPRD:01043 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBFA2|EVI-1|PEBP2aB runt-related transcription factor 1 protein-coding 13-PTNLD9-TUMOR_peak_6856 chr10 31407558 31407674 + 5.97975 NA Intergenic Intergenic -86750 NM_001143767 220929 Hs.660642 NM_182755 HPRD:11247 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 13-PTNLD9-TUMOR_peak_50181 chr8 18283971 18284065 + 5.97975 NA Intergenic MLT1K|LTR|ERVL-MaLR 35263 NM_000015 10 Hs.2 NM_000015 HPRD:02000 NAT2 AAC2|NAT-2|PNAT N-acetyltransferase 2 (arylamine N-acetyltransferase) protein-coding 13-PTNLD9-TUMOR_peak_50531 chr8 30253168 30253353 + 5.97975 NA intron (NM_001008712, intron 1 of 6) L2a|LINE|L2 -10343 NR_046205 100128750 Hs.126813 NR_046205 ENSG00000254109 RBPMS-AS1 - RBPMS antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_17880 chr15 85402512 85402617 + 5.97975 NA exon (NM_020778, exon 7 of 14) exon (NM_020778, exon 7 of 14) -25328 NM_004213 9154 Hs.459187 NM_004213 HPRD:07068 SLC28A1 CNT1|HCNT1 solute carrier family 28 (concentrative nucleoside transporter), member 1 protein-coding 13-PTNLD9-TUMOR_peak_14961 chr13 96256558 96256668 + 5.97975 NA intron (NM_014934, intron 13 of 21) intron (NM_014934, intron 13 of 21) 40347 NM_014934 22873 Hs.656580 NM_014934 HPRD:16363 DZIP1 DZIP|DZIPt1 DAZ interacting zinc finger protein 1 protein-coding 13-PTNLD9-TUMOR_peak_45888 chr6 110831063 110831157 + 5.97975 NA Intergenic MER41B|LTR|ERV1 -33266 NM_033125 85413 Hs.520319 NM_033125 HPRD:12202 SLC22A16 CT2|FLIPT2|OAT6|OCT6|OKB1|dJ261K5.1 solute carrier family 22 (organic cation/carnitine transporter), member 16 protein-coding 13-PTNLD9-TUMOR_peak_26228 chr2 18391649 18391765 + 5.97975 NA Intergenic Intergenic 331783 NM_002252 3790 Hs.414489 NM_002252 HPRD:04865 KCNS3 KV9.3 potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3 protein-coding 13-PTNLD9-TUMOR_peak_1083 chr1 35667833 35667927 + 5.97975 NA Intergenic Intergenic -9137 NM_005066 6421 Hs.355934 NM_005066 HPRD:07284 SFPQ POMP100|PPP1R140|PSF splicing factor proline/glutamine-rich protein-coding 13-PTNLD9-TUMOR_peak_29626 chr2 205538757 205538851 + 5.97975 NA intron (NM_205863, intron 1 of 21) intron (NM_205863, intron 1 of 21) 128288 NM_057177 117583 Hs.657382 NM_057177 HPRD:09795 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3LC|PAR3beta|Par3Lb par-3 family cell polarity regulator beta protein-coding 13-PTNLD9-TUMOR_peak_45028 chr6 42268567 42268692 + 5.97975 NA intron (NM_033502, intron 3 of 17) intron (NM_033502, intron 3 of 17) -82996 NM_018141 55173 Hs.380887 NM_018141 HPRD:14775 MRPS10 MRP-S10|PNAS-122 mitochondrial ribosomal protein S10 protein-coding 13-PTNLD9-TUMOR_peak_29326 chr2 189494214 189494311 + 5.97975 NA Intergenic Intergenic 160569 NM_052952 116093 Hs.470892 NM_052952 DIRC1 - disrupted in renal carcinoma 1 protein-coding 13-PTNLD9-TUMOR_peak_35196 chr3 100244860 100244998 + 5.97975 NA intron (NM_018004, intron 1 of 5) L2|LINE|L2 33466 NM_018004 55076 Hs.658956 NM_018004 HPRD:07647 TMEM45A DERP7 transmembrane protein 45A protein-coding 13-PTNLD9-TUMOR_peak_26040 chr2 9331159 9331498 + 5.97975 NA Intergenic Intergenic -15566 NM_001135191 8853 Hs.555902 NM_003887 HPRD:04820 ASAP2 AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 protein-coding 13-PTNLD9-TUMOR_peak_41857 chr5 121456796 121456890 + 5.97975 NA Intergenic Intergenic -8372 NM_207317 133923 Hs.729673 NM_207317 HPRD:13411 ZNF474 - zinc finger protein 474 protein-coding 13-PTNLD9-TUMOR_peak_32244 chr21 37110755 37110900 + 5.97975 NA Intergenic Intergenic 17814 NR_030414 768219 NR_030414 miRBase:MI0003906 MIR802 MIRN802|hsa-mir-802 microRNA 802 ncRNA 13-PTNLD9-TUMOR_peak_13428 chr12 85470620 85470737 + 5.97975 NA intron (NM_001079910, intron 11 of 26) MIR3|SINE|MIR 40579 NM_001079910 84125 Hs.402200 NM_032165 HPRD:09952 LRRIQ1 - leucine-rich repeats and IQ motif containing 1 protein-coding 13-PTNLD9-TUMOR_peak_40982 chr5 58718984 58719155 + 5.97975 NA intron (NM_001165899, intron 3 of 16) L2c|LINE|L2 -66342 NM_001197219 5144 Hs.117545 NM_006203 HPRD:02530 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D, cAMP-specific protein-coding 13-PTNLD9-TUMOR_peak_40552 chr5 32852638 32852879 + 5.97975 NA Intergenic Intergenic -94791 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LOC340113 - uncharacterized LOC340113 ncRNA 13-PTNLD9-TUMOR_peak_28816 chr2 157740537 157740636 + 5.97975 NA Intergenic L2b|LINE|L2 -373754 NM_014568 11227 Hs.269027 NM_014568 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 13-PTNLD9-TUMOR_peak_15109 chr13 110778837 110779161 + 5.97975 NA Intergenic Intergenic 180497 NM_001845 1282 Hs.17441 NM_001845 HPRD:00359 COL4A1 HANAC|ICH|POREN1|arresten collagen, type IV, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_38886 chr4 90659181 90659275 + 5.97975 NA intron (NM_000345, intron 4 of 5) intron (NM_000345, intron 4 of 5) -98324 NR_045481 644248 Hs.553954 NR_045481 ENSG00000247775 SNCA-AS1 - SNCA antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_37607 chr4 2221857 2222026 + 5.97975 NA intron (NM_181808, intron 1 of 23) LTR41|LTR|ERVL 9017 NM_181808 353497 Hs.368454 NM_181808 HPRD:17876 POLN POL4P polymerase (DNA directed) nu protein-coding 13-PTNLD9-TUMOR_peak_42606 chr5 149339069 149339305 + 5.97975 NA Intergenic Intergenic -1113 NM_000112 1836 Hs.302738 NM_000112 HPRD:05990 SLC26A2 D5S1708|DTD|DTDST|EDM4|MST153|MSTP157 solute carrier family 26 (anion exchanger), member 2 protein-coding 13-PTNLD9-TUMOR_peak_29515 chr2 201527536 201527778 + 5.97975 NA exon (NM_001159, exon 31 of 35) exon (NM_001159, exon 31 of 35) -32789 NR_001557 344454 Hs.148269 NR_001557 AOX2P AOH2|AOX2 aldehyde oxidase 2 pseudogene pseudo 13-PTNLD9-TUMOR_peak_12199 chr12 13318538 13318712 + 5.97975 NA Intergenic Intergenic -30977 NM_001423 2012 Hs.719042 NM_001423 HPRD:11892 EMP1 CL-20|EMP-1|TMP epithelial membrane protein 1 protein-coding 13-PTNLD9-TUMOR_peak_44070 chr6 20811500 20811594 + 5.97975 NA intron (NM_017774, intron 8 of 15) LTR65|LTR|ERV1 276859 NM_017774 54901 Hs.657604 NM_017774 HPRD:13022 CDKAL1 - CDK5 regulatory subunit associated protein 1-like 1 protein-coding 13-PTNLD9-TUMOR_peak_19277 chr16 48517488 48517645 + 5.97975 NA Intergenic SVA_B|Other|Other -98337 NM_003031 6477 Hs.706828 NM_003031 HPRD:03736 SIAH1 SIAH1A siah E3 ubiquitin protein ligase 1 protein-coding 13-PTNLD9-TUMOR_peak_45901 chr6 111549903 111549997 + 5.97975 NA Intergenic Intergenic -30532 NM_153369 91749 Hs.400572 NM_153369 KIAA1919 MFSD4B|NaGLT1 KIAA1919 protein-coding 13-PTNLD9-TUMOR_peak_15471 chr14 32435304 32435420 + 5.97975 NA Intergenic Intergenic 110543 NR_027263 84837 Hs.496755 NM_032751 ENSG00000258655 ARHGAP5-AS1 C14orf128 ARHGAP5 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_28768 chr2 153682439 153682562 + 5.97975 NA Intergenic MER5B|DNA|hAT-Charlie 108093 NR_024526 151188 Hs.643580 NM_152522 HPRD:12485 ARL6IP6 AIP-6|PFAAP1 ADP-ribosylation factor-like 6 interacting protein 6 protein-coding 13-PTNLD9-TUMOR_peak_33535 chr3 419196 419293 + 5.97975 NA intron (NM_001253387, intron 14 of 26) intron (NM_001253387, intron 14 of 26) 8234 NR_110739 101927193 Hs.677744 NR_110739 CHL1-AS1 - CHL1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_53800 chr9 86126156 86126250 + 5.97975 NA intron (NM_001244959, intron 1 of 14) intron (NM_001244959, intron 1 of 14) 27145 NM_001244959 257019 Hs.127535 NM_174938 HPRD:07402 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_1920 chr1 57703993 57704293 + 5.97975 NA intron (NM_021080, intron 4 of 16) intron (NM_021080, intron 4 of 16) -272330 NM_001278544 732 Hs.391835 NM_000066 HPRD:00410 C8B C82 complement component 8, beta polypeptide protein-coding 13-PTNLD9-TUMOR_peak_50191 chr8 19052110 19052346 + 5.97975 NA intron (NR_038919, intron 3 of 4) intron (NR_038919, intron 3 of 4) 50804 NR_038919 100128993 Hs.697742 NR_038919 LOC100128993 - uncharacterized LOC100128993 ncRNA 13-PTNLD9-TUMOR_peak_37502 chr3 197798926 197799036 + 5.97975 NA intron (NR_003291, intron 4 of 9) intron (NR_003291, intron 4 of 9) 8561 NR_003291 348840 Hs.512227 NM_182631 HPRD:14181 ANKRD18DP - ankyrin repeat domain 18D, pseudogene pseudo 13-PTNLD9-TUMOR_peak_26114 chr2 10905679 10905773 + 5.97975 NA intron (NM_001039362, intron 5 of 13) intron (NM_001039362, intron 5 of 13) 43951 NM_144583 245973 Hs.580464 NM_144583 HPRD:16523 ATP6V1C2 ATP6C2|VMA5 ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C2 protein-coding 13-PTNLD9-TUMOR_peak_53961 chr9 93308609 93308728 + 5.97975 NA intron (NR_034157, intron 1 of 5) intron (NR_034157, intron 1 of 5) 36360 NR_034157 340515 Hs.522284 NM_001105317 LINC01501 - long intergenic non-protein coding RNA 1501 ncRNA 13-PTNLD9-TUMOR_peak_18097 chr15 101300033 101300280 + 5.97975 NA Intergenic Intergenic -119741 NM_000693 220 Hs.459538 NM_000693 HPRD:02713 ALDH1A3 ALDH1A6|ALDH6|MCOP8|RALDH3 aldehyde dehydrogenase 1 family, member A3 protein-coding 13-PTNLD9-TUMOR_peak_42545 chr5 148003439 148003538 + 5.97975 NA intron (NM_001286410, intron 1 of 5) L3b|LINE|CR1 13136 NM_001286410 3360 Hs.483773 NM_000870 ENSG00000164270 HTR4 5-HT4|5-HT4R 5-hydroxytryptamine (serotonin) receptor 4, G protein-coupled protein-coding 13-PTNLD9-TUMOR_peak_11152 chr11 109054009 109054117 + 5.97975 NA Intergenic L1HS|LINE|L1 -238783 NM_207645 399947 Hs.172982 NM_207645 HPRD:14218 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 13-PTNLD9-TUMOR_peak_56658 chrX 152438662 152438765 + 5.97975 NA Intergenic Intergenic 47403 NM_004988 4100 Hs.72879 NM_004988 HPRD:02059 MAGEA1 CT1.1|MAGE1 melanoma antigen family A, 1 (directs expression of antigen MZ2-E) protein-coding 13-PTNLD9-TUMOR_peak_7770 chr10 75816337 75816506 + 5.97975 NA intron (NM_003373, intron 2 of 20) intron (NM_003373, intron 2 of 20) 58549 NM_014000 7414 Hs.643896 NM_003373 HPRD:01900 VCL CMD1W|CMH15|HEL114|MV|MVCL vinculin protein-coding 13-PTNLD9-TUMOR_peak_18852 chr16 27327251 27327372 + 5.97975 NA intron (NM_001257406, intron 1 of 9) intron (NM_001257406, intron 1 of 9) 2081 NM_001257406 3566 Hs.513457 NM_000418 HPRD:00990 IL4R CD124|IL-4RA|IL4RA interleukin 4 receptor protein-coding 13-PTNLD9-TUMOR_peak_11041 chr11 101632141 101632243 + 5.97975 NA Intergenic AluY|SINE|Alu -153554 NM_020802 57562 Hs.156352 NM_020802 HPRD:17212 KIAA1377 - KIAA1377 protein-coding 13-PTNLD9-TUMOR_peak_56607 chrX 149804584 149804715 + 5.97975 NA intron (NM_000252, intron 6 of 14) Tigger10|DNA|TcMar-Tigger -57220 NM_003828 8776 Hs.347187 NM_003828 HPRD:02163 MTMR1 - myotubularin related protein 1 protein-coding 13-PTNLD9-TUMOR_peak_25863 chr19_gl000209_random 31192 31294 + 5.97975 NA intron (NM_014219, intron 5 of 7) intron (NM_014219, intron 5 of 7) 9332 NM_014219 3803 Hs.743949 NM_014219 KIR2DL2 CD158B1|CD158b|NKAT-6|NKAT6|p58.2 killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 2 protein-coding 13-PTNLD9-TUMOR_peak_22982 chr18 39355064 39355260 + 5.97975 NA Intergenic L1HS|LINE|L1 -180037 NM_002647 5289 Hs.464971 NM_002647 PIK3C3 VPS34|hVps34 phosphatidylinositol 3-kinase, catalytic subunit type 3 protein-coding 13-PTNLD9-TUMOR_peak_1219 chr1 38774563 38774669 + 5.97975 NA Intergenic LTR16D|LTR|ERVL -94177 NR_038928 339442 Hs.434245 NR_038928 ENSG00000237290 LINC01343 - long intergenic non-protein coding RNA 1343 ncRNA 13-PTNLD9-TUMOR_peak_47548 chr7 55709078 55709172 + 5.97975 NA Intergenic L1M3f|LINE|L1 46600 NR_027340 360132 Hs.446691 NM_182827 HPRD:16900 FKBP9P1 FKBP9L FK506 binding protein 9 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_29510 chr2 201450714 201450833 + 5.97975 NA promoter-TSS (NM_001159) promoter-TSS (NM_001159) 42 NM_001159 316 Hs.406238 NM_001159 HPRD:07537 AOX1 AO|AOH1 aldehyde oxidase 1 protein-coding 13-PTNLD9-TUMOR_peak_18455 chr16 9416758 9416894 + 5.97975 NA Intergenic MLT1K|LTR|ERVL-MaLR 88052 NR_036166 100422920 NR_036166 miRBase:MI0014244 MIR548X - microRNA 548x ncRNA 13-PTNLD9-TUMOR_peak_14400 chr13 21591591 21591763 + 5.97975 NA intron (NM_014572, intron 2 of 7) intron (NM_014572, intron 2 of 7) 44045 NM_014572 26524 Hs.78960 NM_014572 HPRD:07277 LATS2 KPM large tumor suppressor kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_41301 chr5 74496790 74496884 + 5.97975 NA intron (NM_001164443, intron 5 of 24) intron (NM_001164443, intron 5 of 24) 35866 NM_001164443 256006 Hs.482533 NM_001164443 ENSG00000145700 ANKRD31 - ankyrin repeat domain 31 protein-coding 13-PTNLD9-TUMOR_peak_28238 chr2 120187287 120187473 + 5.97975 NA Intergenic Intergenic -2066 NM_183240 140738 Hs.26216 NM_183240 HPRD:15536 TMEM37 PR|PR1 transmembrane protein 37 protein-coding 13-PTNLD9-TUMOR_peak_9627 chr11 44277099 44277218 + 5.97975 NA Intergenic L2c|LINE|L2 54558 NM_021926 60529 Hs.436055 NM_021926 HPRD:05661 ALX4 CRS5|FND2 ALX homeobox 4 protein-coding 13-PTNLD9-TUMOR_peak_43884 chr6 14144974 14145076 + 5.97975 NA Intergenic Intergenic 27160 NM_004233 9308 Hs.595133 NM_004233 HPRD:05170 CD83 BL11|HB15 CD83 molecule protein-coding 13-PTNLD9-TUMOR_peak_34133 chr3 27295401 27295532 + 5.97975 NA intron (NM_199347, intron 24 of 24) LTR16C|LTR|ERVL 115446 NM_199347 152110 Hs.506115 NM_152534 HPRD:08135 NEK10 - NIMA-related kinase 10 protein-coding 13-PTNLD9-TUMOR_peak_40592 chr5 34710065 34710288 + 5.97975 NA intron (NM_001145525, intron 4 of 19) intron (NM_001145525, intron 4 of 19) 22512 NM_001145523 26064 Hs.431400 NM_015577 HPRD:09416 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 13-PTNLD9-TUMOR_peak_43813 chr6 12301505 12301612 + 5.97975 NA Intergenic Intergenic 11029 NM_001955 1906 Hs.511899 NM_001955 HPRD:07030 EDN1 ARCND3|ET1|HDLCQ7|PPET1|QME endothelin 1 protein-coding 13-PTNLD9-TUMOR_peak_32391 chr21 43050526 43050681 + 5.97975 NA Intergenic Intergenic -48859 NR_024367 54090 Hs.570442 NR_024367 LINC00111 C21orf21|NCRNA00111 long intergenic non-protein coding RNA 111 ncRNA 13-PTNLD9-TUMOR_peak_4980 chr1 201735373 201735475 + 5.97975 NA intron (NM_001167738, intron 1 of 26) intron (NM_001167738, intron 1 of 26) 26461 NM_001167738 89796 Hs.585374 NM_020443 HPRD:10113 NAV1 POMFIL3|STEERIN1|UNC53H1 neuron navigator 1 protein-coding 13-PTNLD9-TUMOR_peak_29240 chr2 180397876 180397978 + 5.97975 NA intron (NM_152520, intron 4 of 9) intron (NM_152520, intron 4 of 9) 29388 NM_001113398 151126 Hs.655005 NM_152520 HPRD:15823 ZNF385B ZNF533 zinc finger protein 385B protein-coding 13-PTNLD9-TUMOR_peak_27552 chr2 89037134 89037324 + 5.97975 NA intron (NM_144563, intron 7 of 8) intron (NM_144563, intron 7 of 8) -28190 NR_015424 645784 Hs.105323 NR_015424 ENSG00000230006 ANKRD36BP2 - ankyrin repeat domain 36B pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_8527 chr10 125503546 125503690 + 5.97975 NA Intergenic Intergenic 77747 NM_153442 2849 Hs.12751 NM_153442 GPR26 - G protein-coupled receptor 26 protein-coding 13-PTNLD9-TUMOR_peak_40693 chr5 40603717 40603818 + 5.97975 NA Intergenic Intergenic -76265 NM_000958 5734 Hs.199248 NM_000958 HPRD:03350 PTGER4 EP4|EP4R prostaglandin E receptor 4 (subtype EP4) protein-coding 13-PTNLD9-TUMOR_peak_42415 chr5 141659809 141659911 + 5.97975 NA Intergenic Intergenic 44122 NM_001293289 81848 Hs.323308 NM_030964 HPRD:10466 SPRY4 HH17 sprouty homolog 4 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_9631 chr11 44585962 44586117 + 5.97975 NA Intergenic Intergenic -1102 NM_002231 3732 Hs.527778 NM_002231 CD82 4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27 CD82 molecule protein-coding 13-PTNLD9-TUMOR_peak_52027 chr8 129440598 129440728 + 5.97975 NA intron (NR_121672, intron 2 of 7) intron (NR_121672, intron 2 of 7) 136262 NR_121672 101927774 Hs.628730 NR_121672 ENSG00000254275 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 13-PTNLD9-TUMOR_peak_3061 chr1 119491988 119492090 + 5.97975 NA intron (NM_152380, intron 1 of 7) intron (NM_152380, intron 1 of 7) 40140 NM_152380 6913 Hs.146196 NM_152380 HPRD:16035 TBX15 TBX14 T-box 15 protein-coding 13-PTNLD9-TUMOR_peak_17956 chr15 90388849 90389042 + 5.97975 NA intron (NR_037582, intron 4 of 5) intron (NR_037582, intron 4 of 5) 5008 NR_049817 100847059 NR_049817 MIR5094 - microRNA 5094 ncRNA 13-PTNLD9-TUMOR_peak_39395 chr4 139011772 139011866 + 5.97975 NA intron (NR_038380, intron 1 of 6) intron (NR_038380, intron 1 of 6) 1651 NR_038380 641364 Hs.570846 NR_038380 ENSG00000250033 SLC7A11-AS1 - SLC7A11 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_33018 chr22 27054856 27055100 + 5.97975 NA intron (NR_033320, intron 1 of 4) MIRc|SINE|MIR 1532 NR_033320 440823 Hs.517502 NR_003491 ENSG00000225783 MIAT C22orf35|GOMAFU|LINC00066|NCRNA00066|RNCR2 myocardial infarction associated transcript (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_27538 chr2 88486707 88486831 + 5.97975 NA TTS (NM_001244678) TTS (NM_001244678) 14111 NM_018271 55258 Hs.739080 NM_018271 HPRD:07715 THNSL2 SOFAT|THS2|TSH2 threonine synthase-like 2 (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_54579 chr9 118571081 118571189 + 5.97975 NA Intergenic Intergenic -64617 NR_109805 101928775 Hs.522362 NR_109805 LOC101928775 - uncharacterized LOC101928775 ncRNA 13-PTNLD9-TUMOR_peak_36730 chr3 171794142 171794263 + 5.97975 NA intron (NM_001135095, intron 1 of 25) intron (NM_001135095, intron 1 of 25) 35858 NM_001135095 64778 Hs.744888 NM_022763 HPRD:10943 FNDC3B FAD104|PRO4979|YVTM2421 fibronectin type III domain containing 3B protein-coding 13-PTNLD9-TUMOR_peak_43664 chr6 7086754 7086968 + 5.97975 NA Intergenic Intergenic -20969 NM_001168344 6239 Hs.298248 NM_002955 HPRD:03733 RREB1 FINB|HNT|LZ321|RREB-1|Zep-1 ras responsive element binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_34386 chr3 44666387 44666610 + 5.97975 NA promoter-TSS (NM_006991) promoter-TSS (NM_006991) -13 NM_006991 10168 Hs.157035 NM_006991 HPRD:10322 ZNF197 D3S1363E|P18|VHLaK|ZKSCAN9|ZNF166|ZNF20|ZSCAN41 zinc finger protein 197 protein-coding 13-PTNLD9-TUMOR_peak_46554 chr6 168558424 168558534 + 5.97975 NA Intergenic Intergenic -76242 NR_110312 79981 Hs.266746 NM_024919 HPRD:10997 FRMD1 bA164L23.1 FERM domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_51526 chr8 105349274 105349368 + 5.97975 NA Intergenic Intergenic -2703 NM_030788 81501 Hs.652230 NM_030788 HPRD:07295 DCSTAMP FIND|TM7SF4|hDC-STAMP dendrocyte expressed seven transmembrane protein protein-coding 13-PTNLD9-TUMOR_peak_9648 chr11 45067581 45067695 + 5.97975 NA Intergenic Intergenic -47926 NR_046338 56981 Hs.178715 NM_020229 HPRD:11456 PRDM11 PFM8 PR domain containing 11 protein-coding 13-PTNLD9-TUMOR_peak_34178 chr3 31108602 31108813 + 5.97975 NA Intergenic UCON29|DNA|PiggyBac? -172554 NM_207359 339896 Hs.657052 NM_207359 HPRD:13557 GADL1 ADC|CSADC|HuADC|HuCSADC glutamate decarboxylase-like 1 protein-coding 13-PTNLD9-TUMOR_peak_25609 chr19 54288529 54288643 + 5.97975 NA Intergenic Intergenic -2343 NR_029864 442916 NR_029864 miRBase:MI0000779 MIR371A MIR371|MIRN371|hsa-mir-371|hsa-mir-371a microRNA 371a ncRNA 13-PTNLD9-TUMOR_peak_9548 chr11 35929678 35929804 + 5.97975 NA Intergenic Intergenic -35871 NM_174902 143458 Hs.745134 NM_174902 HPRD:14063 LDLRAD3 LRAD3 low density lipoprotein receptor class A domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_55507 chrX 7956351 7956514 + 5.97975 NA Intergenic Intergenic -60652 NM_001142389 8228 Hs.264 NM_004650 HPRD:02112 PNPLA4 DXS1283E|GS2|iPLA2eta patatin-like phospholipase domain containing 4 protein-coding 13-PTNLD9-TUMOR_peak_8080 chr10 97849923 97850038 + 5.97975 NA promoter-TSS (NR_038444) promoter-TSS (NR_038444) 12 NR_038444 728558 Hs.538374 NR_038444 ENSG00000226688 ENTPD1-AS1 - ENTPD1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_12298 chr12 22465386 22465551 + 5.97975 NA intron (NM_003034, intron 1 of 4) Charlie20a|DNA|hAT-Charlie 22180 NM_003034 6489 Hs.408614 NM_003034 HPRD:03078 ST8SIA1 GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_45497 chr6 73819499 73819692 + 5.97975 NA intron (NM_001160133, intron 6 of 14) intron (NM_001160133, intron 6 of 14) 33642 NR_046621 100873997 Hs.741819 NR_046621 ENSG00000229154 KCNQ5-AS1 - KCNQ5 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_14290 chr12 128387799 128387898 + 5.97975 NA Intergenic L1ME1|LINE|L1 -12107 NR_046392 100862680 Hs.385496 NR_046392 ENSG00000256193 LINC00507 - long intergenic non-protein coding RNA 507 ncRNA 13-PTNLD9-TUMOR_peak_41009 chr5 60576146 60576329 + 5.97975 NA Intergenic Intergenic -51863 NM_020928 57688 Hs.744939 NM_020928 ENSG00000130449 ZSWIM6 - zinc finger, SWIM-type containing 6 protein-coding 13-PTNLD9-TUMOR_peak_272 chr1 8285071 8285180 + 5.97975 NA Intergenic Intergenic -93020 NM_001080397 50651 Hs.463036 NM_001080397 ENSG00000162426 SLC45A1 DNB5 solute carrier family 45, member 1 protein-coding 13-PTNLD9-TUMOR_peak_48841 chr7 112758614 112758729 + 5.97975 NA promoter-TSS (NR_015442) promoter-TSS (NR_015442) -34 NR_024412 401397 Hs.117929 NR_015442 ENSG00000214194 LINC00998 - long intergenic non-protein coding RNA 998 ncRNA 13-PTNLD9-TUMOR_peak_52750 chr9 12916101 12916198 + 5.97975 NA Intergenic MIR3|SINE|MIR -101761 NR_125775 101929467 Hs.586443 NR_125775 LURAP1L-AS1 - LURAP1L antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_55014 chr9 137750384 137750666 + 5.97975 NA intron (NR_103451, intron 1 of 1) intron (NR_103451, intron 1 of 1) -7872 NR_039696 100616212 NR_039696 miRBase:MI0016837 MIR3689F - microRNA 3689f ncRNA 13-PTNLD9-TUMOR_peak_14979 chr13 98279932 98280040 + 5.97975 NA Intergenic Intergenic 193511 NM_021033 5911 Hs.508480 NM_021033 RAP2A K-REV|KREV|RAP2|RbBP-30 RAP2A, member of RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_30269 chr20 1699798 1700023 + 5.97975 NA Intergenic LTR8|LTR|ERV1 60482 NR_037142 100289473 Hs.641525 NR_037142 ENSG00000232528 LOC100289473 - cytoskeleton associated protein 2-like pseudogene pseudo 13-PTNLD9-TUMOR_peak_30225 chr2 243017938 243018135 + 5.97975 NA intron (NR_110220, intron 3 of 3) intron (NR_110220, intron 3 of 3) -12808 NR_024437 728323 Hs.471887 NR_024437 LOC728323 - uncharacterized LOC728323 ncRNA 13-PTNLD9-TUMOR_peak_37040 chr3 185739500 185739721 + 5.97975 NA Intergenic Intergenic 61852 NR_033752 344887 Hs.128803 NR_033752 ENSG00000171658 LOC344887 - NmrA-like family domain containing 1 pseudogene pseudo 13-PTNLD9-TUMOR_peak_56122 chrX 71341304 71341398 + 5.97975 NA intron (NM_001013627, intron 1 of 7) intron (NM_001013627, intron 1 of 7) 10400 NM_001024455 340526 Hs.512180 NM_001024455 HPRD:18594 RGAG4 6430402L03Rik|MAR5|MART5 retrotransposon gag domain containing 4 protein-coding 13-PTNLD9-TUMOR_peak_7570 chr10 70265330 70265496 + 5.97975 NA intron (NM_152707, intron 3 of 8) AluSq2|SINE|Alu 21867 NM_152707 8034 Hs.180408 NM_152707 SLC25A16 D10S105E|GDA|GDC|HGT.1|ML7|hML7 solute carrier family 25 (mitochondrial carrier), member 16 protein-coding 13-PTNLD9-TUMOR_peak_25178 chr19 46618819 46618913 + 5.97975 NA Intergenic Intergenic 9065 NM_207393 388555 Hs.365496 NM_207393 HPRD:17140 IGFL3 UNQ483 IGF-like family member 3 protein-coding 13-PTNLD9-TUMOR_peak_9102 chr11 12589466 12589569 + 5.97975 NA Intergenic Tigger1|DNA|TcMar-Tigger -106452 NM_021961 7003 Hs.655331 NM_021961 HPRD:01802 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain family member 1 (SV40 transcriptional enhancer factor) protein-coding 13-PTNLD9-TUMOR_peak_40485 chr5 22649422 22649516 + 5.97975 NA intron (NM_004061, intron 1 of 14) MIRb|SINE|MIR 204262 NM_004061 1010 Hs.113684 NM_004061 HPRD:11081 CDH12 CDHB cadherin 12, type 2 (N-cadherin 2) protein-coding 13-PTNLD9-TUMOR_peak_47806 chr7 69849991 69850174 + 5.97975 NA intron (NM_001127231, intron 4 of 17) intron (NM_001127231, intron 4 of 17) -747441 NM_022479 64409 Hs.488591 NM_022479 HPRD:15655 WBSCR17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T5L Williams-Beuren syndrome chromosome region 17 protein-coding 13-PTNLD9-TUMOR_peak_9916 chr11 58421617 58421740 + 5.97975 NA Intergenic Intergenic 31532 NM_000614 1270 Hs.524920 NM_000614 HPRD:00347 CNTF HCNTF ciliary neurotrophic factor protein-coding 13-PTNLD9-TUMOR_peak_42692 chr5 151031722 151031819 + 5.97975 NA Intergenic Intergenic -24736 NR_109873 101927096 Hs.571023 NR_109873 ENSG00000249035 CTB-113P19.1 - uncharacterized LOC101927096 ncRNA 13-PTNLD9-TUMOR_peak_20981 chr17 37844141 37844300 + 5.97975 NA promoter-TSS (NM_001005862) promoter-TSS (NM_001005862) 103 NM_033419 93210 Hs.462971 NM_033419 HPRD:15118 PGAP3 AGLA546|CAB2|PERLD1|PP1498|hCOS16 post-GPI attachment to proteins 3 protein-coding 13-PTNLD9-TUMOR_peak_7775 chr10 75949962 75950072 + 5.97975 NA intron (NM_001123, intron 1 of 10) L1MB7|LINE|L1 13770 NM_001202449 132 Hs.656586 NM_001123 HPRD:00039 ADK AK adenosine kinase protein-coding 13-PTNLD9-TUMOR_peak_35639 chr3 124407826 124407920 + 5.97975 NA intron (NM_001024660, intron 51 of 59) intron (NM_001024660, intron 51 of 59) -41340 NM_000373 7372 Hs.2057 NM_000373 UMPS OPRT uridine monophosphate synthetase protein-coding 13-PTNLD9-TUMOR_peak_30417 chr20 11028270 11028448 + 5.97975 NA Intergenic LFSINE_Vert|SINE|SINE -138439 NR_109866 101929413 Hs.385604 NR_109866 ENSG00000232900 LOC101929413 - uncharacterized LOC101929413 ncRNA 13-PTNLD9-TUMOR_peak_28645 chr2 144230910 144231004 + 5.97975 NA intron (NM_018460, intron 8 of 13) intron (NM_018460, intron 8 of 13) 344058 NM_018460 55843 Hs.171011 NM_018460 HPRD:06447 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 13-PTNLD9-TUMOR_peak_40472 chr5 20679257 20679377 + 5.97975 NA Intergenic Tigger7|DNA|TcMar-Tigger -103335 NM_001291956 1016 Hs.317632 NM_004934 HPRD:04314 CDH18 CDH14|CDH14L|CDH24 cadherin 18, type 2 protein-coding 13-PTNLD9-TUMOR_peak_20803 chr17 28699906 28700000 + 5.97975 NA Intergenic Intergenic -5989 NM_001304 1362 Hs.446079 NM_001304 HPRD:04375 CPD GP180 carboxypeptidase D protein-coding 13-PTNLD9-TUMOR_peak_17045 chr15 38828509 38828800 + 5.97975 NA intron (NM_005739, intron 2 of 16) intron (NM_005739, intron 2 of 16) 28353 NM_005739 10125 Hs.591127 NM_005739 HPRD:04909 RASGRP1 CALDAG-GEFI|CALDAG-GEFII|RASGRP|V|hRasGRP1 RAS guanyl releasing protein 1 (calcium and DAG-regulated) protein-coding 13-PTNLD9-TUMOR_peak_9482 chr11 34018679 34018840 + 5.97975 NA Intergenic Intergenic -54471 NM_005898 4076 Hs.471818 NM_005898 HPRD:03108 CAPRIN1 GPIAP1|GPIP137|GRIP137|M11S1|RNG105|p137GPI cell cycle associated protein 1 protein-coding 13-PTNLD9-TUMOR_peak_18060 chr15 99343782 99343932 + 5.97975 NA intron (NM_001291858, intron 2 of 20) intron (NM_001291858, intron 2 of 20) 16202 NR_039864 100616432 NR_039864 MIR4714 - microRNA 4714 ncRNA 13-PTNLD9-TUMOR_peak_10966 chr11 95092283 95092468 + 5.97975 NA Intergenic Intergenic -126670 NM_001271594 143686 Hs.120633 NM_144665 HPRD:09682 SESN3 SEST3 sestrin 3 protein-coding 13-PTNLD9-TUMOR_peak_9379 chr11 27908441 27908553 + 5.97975 NA Intergenic Intergenic -164892 NM_170731 627 Hs.502182 NM_001709 HPRD:00214 BDNF ANON2|BULN2 brain-derived neurotrophic factor protein-coding 13-PTNLD9-TUMOR_peak_13634 chr12 104503073 104503167 + 5.97975 NA Intergenic Intergenic 28920 NM_006166 4801 Hs.84928 NM_006166 HPRD:01794 NFYB CBF-A|CBF-B|HAP3|NF-YB nuclear transcription factor Y, beta protein-coding 13-PTNLD9-TUMOR_peak_56432 chrX 121699931 121700062 + 5.97975 NA Intergenic MLT1K|LTR|ERVL-MaLR -618100 NM_000828 2892 Hs.377070 NM_000828 HPRD:02378 GRIA3 GLUR-C|GLUR-K3|GLUR3|GLURC|GluA3|MRX94 glutamate receptor, ionotropic, AMPA 3 protein-coding 13-PTNLD9-TUMOR_peak_21036 chr17 39560317 39560472 + 5.97975 NA intron (NR_040111, intron 1 of 2) MIRc|SINE|MIR 1726 NR_040111 100505782 Hs.463024 NR_040111 ENSG00000234859 LOC100505782 - uncharacterized LOC100505782 ncRNA 13-PTNLD9-TUMOR_peak_30624 chr20 23918103 23918206 + 5.97975 NA Intergenic Intergenic 49358 NM_178312 92086 Hs.355394 NM_080920 HPRD:17037 GGTLC1 GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2 gamma-glutamyltransferase light chain 1 protein-coding 13-PTNLD9-TUMOR_peak_9161 chr11 14309854 14310022 + 5.97975 NA intron (NM_012250, intron 4 of 5) intron (NM_012250, intron 4 of 5) 70093 NM_001177315 22800 Hs.502004 NM_012250 HPRD:02518 RRAS2 TC21 related RAS viral (r-ras) oncogene homolog 2 protein-coding 13-PTNLD9-TUMOR_peak_17574 chr15 70830764 70830861 + 5.97975 NA Intergenic Intergenic 163808 NM_001008224 55075 Hs.108049 NM_018003 HPRD:11657 UACA NUCLING uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding 13-PTNLD9-TUMOR_peak_30247 chr20 657731 657888 + 5.97975 NA promoter-TSS (NM_033129) promoter-TSS (NM_033129) -986 NM_033129 85508 Hs.355284 NM_033129 HPRD:15305 SCRT2 ZNF898B scratch family zinc finger 2 protein-coding 13-PTNLD9-TUMOR_peak_51754 chr8 120932211 120932305 + 5.97975 NA intron (NM_001283012, intron 1 of 6) intron (NM_001283012, intron 1 of 6) 46363 NM_022783 64798 Hs.112981 NM_022783 HPRD:13137 DEPTOR DEP.6|DEPDC6 DEP domain containing MTOR-interacting protein protein-coding 13-PTNLD9-TUMOR_peak_7978 chr10 90782696 90782790 + 5.97975 NA Intergenic MER63A|DNA|hAT-Blackjack -30011 NR_028371 100302740 Hs.244139 NR_028371 FAS-AS1 FAS-AS|FASAS|SAF FAS antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_44925 chr6 39384655 39384758 + 5.97975 NA intron (NM_001289024, intron 2 of 9) intron (NM_001289024, intron 2 of 9) 14444 NM_001289024 221458 Hs.588202 NM_145027 HPRD:10786 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 13-PTNLD9-TUMOR_peak_40560 chr5 33299857 33299975 + 5.97975 NA Intergenic Intergenic -140886 NM_001258437 6897 Hs.481860 NM_152295 HPRD:01762 TARS ThrRS threonyl-tRNA synthetase protein-coding 13-PTNLD9-TUMOR_peak_13548 chr12 97950378 97950508 + 5.97975 NA Intergenic Intergenic -7147 NR_029678 406926 NR_029678 miRBase:MI0000453 MIR135A2 MIRN135-2|MIRN135A2 microRNA 135a-2 ncRNA 13-PTNLD9-TUMOR_peak_15572 chr14 36574763 36574949 + 5.97975 NA intron (NR_073454, intron 1 of 2) L1MEf|LINE|L1 35223 NR_073454 101101773 Hs.640678 NR_073454 ENSG00000257585 LINC00609 - long intergenic non-protein coding RNA 609 ncRNA 13-PTNLD9-TUMOR_peak_8497 chr10 123811217 123811381 + 5.97975 NA intron (NM_206861, intron 3 of 19) (T)n|Simple_repeat|Simple_repeat -61255 NM_001291879 10579 Hs.501252 NM_006997 HPRD:05600 TACC2 AZU-1|ECTACC transforming, acidic coiled-coil containing protein 2 protein-coding 13-PTNLD9-TUMOR_peak_10931 chr11 93822627 93822779 + 5.97975 NA intron (NM_001098672, intron 12 of 19) intron (NM_001098672, intron 12 of 19) -39391 NM_015368 24145 Hs.591976 NM_015368 HPRD:10526 PANX1 MRS1|PX1|UNQ2529 pannexin 1 protein-coding 13-PTNLD9-TUMOR_peak_22836 chr18 24372814 24372908 + 5.97975 NA Intergenic Intergenic 69714 NM_004028 361 Hs.315369 NM_001650 HPRD:02631 AQP4 HMIWC2|MIWC aquaporin 4 protein-coding 13-PTNLD9-TUMOR_peak_27899 chr2 103549171 103549265 + 5.97975 NA Intergenic Intergenic 170728 NM_144632 130827 Hs.436203 NM_144632 HPRD:08698 TMEM182 - transmembrane protein 182 protein-coding 13-PTNLD9-TUMOR_peak_32680 chr22 18449235 18449339 + 5.97975 NA intron (NM_015241, intron 1 of 31) intron (NM_015241, intron 1 of 31) 14440 NR_030378 693233 NR_030378 miRBase:MI0003663 MIR648 MIRN648|hsa-mir-648 microRNA 648 ncRNA 13-PTNLD9-TUMOR_peak_10009 chr11 61406029 61406131 + 5.97975 NA non-coding (NR_002775, exon 5 of 5) non-coding (NR_002775, exon 5 of 5) 23572 NR_002775 113157 Hs.502733 NR_002775 ENSG00000243742 RPLP0P2 RPLP0L2|RPLP0_3_1146 ribosomal protein, large, P0 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_2372 chr1 87915476 87915641 + 5.97975 NA Intergenic Intergenic -78220 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 13-PTNLD9-TUMOR_peak_4413 chr1 172436343 172436437 + 5.97975 NA intron (NM_001300760, intron 4 of 4) intron (NM_001300760, intron 4 of 4) 14357 NM_001300760 92346 Hs.517991 NM_139240 HPRD:14291 C1orf105 - chromosome 1 open reading frame 105 protein-coding 13-PTNLD9-TUMOR_peak_50685 chr8 40207580 40207757 + 5.97975 NA Intergenic MER44D|DNA|TcMar-Tigger 196681 NM_020130 56892 Hs.591849 NM_020130 HPRD:09650 C8orf4 TC-1|TC1 chromosome 8 open reading frame 4 protein-coding 13-PTNLD9-TUMOR_peak_27546 chr2 88840034 88840192 + 5.97975 NA intron (NR_110236, intron 2 of 2) intron (NR_110236, intron 2 of 2) 1875 NR_110236 101928371 Hs.738045 NR_110236 ENSG00000225420 LOC101928371 - uncharacterized LOC101928371 ncRNA 13-PTNLD9-TUMOR_peak_28658 chr2 146518574 146518668 + 5.97975 NA Intergenic Intergenic -826004 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein, cytoplasmic 1 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_8613 chr10 130549739 130549910 + 5.97975 NA Intergenic Intergenic 465610 NR_120619 101927381 Hs.523342 NR_120619 LINC01163 TCONS_00017722 long intergenic non-protein coding RNA 1163 ncRNA 13-PTNLD9-TUMOR_peak_12598 chr12 43085974 43086214 + 5.97975 NA Intergenic MER51A|LTR|ERV1 -45794 NR_110042 101927058 Hs.434238 NR_110042 ENSG00000257510 LOC101927058 - uncharacterized LOC101927058 ncRNA 13-PTNLD9-TUMOR_peak_38515 chr4 63506047 63506276 + 5.97975 NA Intergenic Intergenic -478678 NR_110595 101927186 Hs.723269 NR_110595 LPHN3-AS1 - LPHN3 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_26927 chr2 53463133 53463227 + 5.97975 NA Intergenic Intergenic -531749 NM_001008708 494143 Hs.585944 NM_001008708 HPRD:17418 CHAC2 - ChaC, cation transport regulator homolog 2 (E. coli) protein-coding 13-PTNLD9-TUMOR_peak_56221 chrX 85403264 85403382 + 5.97975 NA promoter-TSS (NM_001139514) promoter-TSS (NM_001139514) -132 NM_053281 117154 Hs.86603 NM_053281 HPRD:06481 DACH2 - dachshund family transcription factor 2 protein-coding 13-PTNLD9-TUMOR_peak_24438 chr19 19097677 19097783 + 5.97975 NA Intergenic Intergenic -45689 NM_004838 9454 Hs.720208 NM_004838 HPRD:07270 HOMER3 HOMER-3|VESL3 homer homolog 3 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_11818 chr12 2394088 2394182 + 5.97975 NA intron (NR_046769, intron 1 of 2) intron (NR_046769, intron 1 of 2) 15193 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_17345 chr15 58215182 58215309 + 5.97975 NA Intergenic Intergenic 91050 NM_170697 8854 Hs.643455 NM_003888 HPRD:04733 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family, member A2 protein-coding 13-PTNLD9-TUMOR_peak_45180 chr6 45649849 45649988 + 5.97975 NA Intergenic Intergenic 255416 NR_045674 53405 Hs.485489 NM_016929 HPRD:06292 CLIC5 MST130|MSTP130 chloride intracellular channel 5 protein-coding 13-PTNLD9-TUMOR_peak_46237 chr6 148552838 148553064 + 5.97975 NA Intergenic L3|LINE|CR1 -110778 NM_015278 23328 Hs.193133 NM_015278 HPRD:06408 SASH1 SH3D6A|dJ323M4|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_21020 chr17 38666616 38666733 + 5.97975 NA Intergenic Intergenic -8820 NM_032865 84951 Hs.438292 NM_032865 HPRD:12223 TNS4 CTEN tensin 4 protein-coding 13-PTNLD9-TUMOR_peak_8053 chr10 96943469 96943657 + 5.97975 NA Intergenic CpG -10394 NM_207321 142827 Hs.134229 NM_207321 HPRD:12565 ACSM6 C10orf129|bA310E22.3 acyl-CoA synthetase medium-chain family member 6 protein-coding 13-PTNLD9-TUMOR_peak_7343 chr10 50801231 50801331 + 5.97975 NA Intergenic Intergenic -15860 NM_020984 1103 Hs.302002 NM_020549 HPRD:07510 CHAT CHOACTASE|CMS1A|CMS1A2 choline O-acetyltransferase protein-coding 13-PTNLD9-TUMOR_peak_34358 chr3 43021011 43021105 + 5.97975 NA 5' UTR (NM_001129908, exon 1 of 5) 5' UTR (NM_001129908, exon 1 of 5) 299 NM_001129908 729085 Hs.729533 NM_001129908 ENSG00000144649 FAM198A C3orf41 family with sequence similarity 198, member A protein-coding 13-PTNLD9-TUMOR_peak_26925 chr2 53255304 53255510 + 5.97975 NA Intergenic Intergenic -739522 NM_001008708 494143 Hs.585944 NM_001008708 HPRD:17418 CHAC2 - ChaC, cation transport regulator homolog 2 (E. coli) protein-coding 13-PTNLD9-TUMOR_peak_39638 chr4 152355652 152355796 + 5.97975 NA intron (NM_001109977, intron 1 of 13) intron (NM_001109977, intron 1 of 13) 25326 NM_001109977 729830 Hs.633810 NM_001109977 ENSG00000164142 FAM160A1 - family with sequence similarity 160, member A1 protein-coding 13-PTNLD9-TUMOR_peak_31598 chr20 52897758 52897866 + 5.97975 NA Intergenic Intergenic 73310 NM_002623 5203 Hs.91161 NM_002623 HPRD:05358 PFDN4 C1|PFD4 prefoldin subunit 4 protein-coding 13-PTNLD9-TUMOR_peak_11147 chr11 108505947 108506123 + 5.97975 NA Intergenic Intergenic -29717 NM_004398 1662 Hs.591931 NM_004398 HPRD:03138 DDX10 HRH-J8 DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 protein-coding 13-PTNLD9-TUMOR_peak_51181 chr8 79428546 79428653 + 5.97975 NA 5' UTR (NM_006823, exon 1 of 4) 5' UTR (NM_006823, exon 1 of 4) 263 NM_006823 5569 Hs.433700 NM_006823 HPRD:05828 PKIA PRKACN1 protein kinase (cAMP-dependent, catalytic) inhibitor alpha protein-coding 13-PTNLD9-TUMOR_peak_56688 chrX 153212870 153212971 + 5.97975 NA TTS (NM_005334) TTS (NM_005334) -2688 NM_002910 5973 Hs.158331 NM_002910 HPRD:02423 RENBP RBP|RNBP renin binding protein protein-coding 13-PTNLD9-TUMOR_peak_54962 chr9 135545345 135545457 + 5.97975 NA promoter-TSS (NM_012204) promoter-TSS (NM_012204) -327 NM_012204 9329 Hs.656646 NM_012204 GTF3C4 KAT12|TFIII90|TFIIIC290|TFIIIC90|TFIIICDELTA general transcription factor IIIC, polypeptide 4, 90kDa protein-coding 13-PTNLD9-TUMOR_peak_713 chr1 24691848 24691942 + 5.97975 NA TTS (NM_198174) TTS (NM_198174) 42365 NM_021180 57822 Hs.657920 NM_021180 HPRD:12210 GRHL3 SOM|TFCP2L4|VWS2 grainyhead-like 3 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_9099 chr11 12433395 12433574 + 5.97975 NA intron (NM_018222, intron 1 of 12) intron (NM_018222, intron 1 of 12) 34458 NM_018222 55742 Hs.432914 NM_018222 PARVA CH-ILKBP|MXRA2 parvin, alpha protein-coding 13-PTNLD9-TUMOR_peak_33422 chr22 45914579 45914747 + 5.97975 NA exon (NM_006487, exon 2 of 15) exon (NM_006487, exon 2 of 15) 15944 NM_001996 2192 Hs.24601 NM_001996 HPRD:00629 FBLN1 FBLN|FIBL1 fibulin 1 protein-coding 13-PTNLD9-TUMOR_peak_55498 chrX 4969919 4970136 + 5.97975 NA Intergenic LTR25|LTR|ERV1 -418414 NR_110390 101928201 Hs.586488 NR_110390 ENSG00000236513 LOC101928201 - uncharacterized LOC101928201 ncRNA 13-PTNLD9-TUMOR_peak_54032 chr9 96233629 96233768 + 5.97975 NA intron (NM_001286722, intron 2 of 17) intron (NM_001286722, intron 2 of 17) -17824 NM_198841 158293 Hs.350364 NM_198841 HPRD:12931 FAM120AOS C9orf10OS family with sequence similarity 120A opposite strand protein-coding 13-PTNLD9-TUMOR_peak_19522 chr16 66312116 66312305 + 5.97975 NA Intergenic L1PA16|LINE|L1 -88315 NM_001795 1003 Hs.76206 NM_001795 HPRD:03075 CDH5 7B4|CD144 cadherin 5, type 2 (vascular endothelium) protein-coding 13-PTNLD9-TUMOR_peak_6784 chr10 29328688 29328879 + 5.97975 NA Intergenic Intergenic 193446 NM_001278522 283080 NM_001278522 ENSG00000204365 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 13-PTNLD9-TUMOR_peak_10912 chr11 93020746 93020848 + 5.97975 NA Intergenic THE1D|LTR|ERVL-MaLR -43086 NM_181645 159989 Hs.436625 NM_181645 HPRD:08689 CCDC67 - coiled-coil domain containing 67 protein-coding 13-PTNLD9-TUMOR_peak_48892 chr7 121036325 121036574 + 5.97975 NA promoter-TSS (NM_014888) promoter-TSS (NM_014888) -27 NM_001040020 10447 Hs.434053 NM_014888 HPRD:12270 FAM3C ILEI family with sequence similarity 3, member C protein-coding 13-PTNLD9-TUMOR_peak_22805 chr18 22006766 22007051 + 5.97975 NA intron (NM_018439, intron 1 of 10) CpG 299 NM_018439 55364 Hs.515317 NM_018439 HPRD:13739 IMPACT RWDD5 impact RWD domain protein protein-coding 13-PTNLD9-TUMOR_peak_2411 chr1 89883479 89883634 + 5.97975 NA intron (NR_003133, intron 2 of 4) L1PA2|LINE|L1 10318 NR_003133 400759 Hs.661968 NR_003133 ENSG00000225492 GBP1P1 - guanylate binding protein 1, interferon-inducible pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_26009 chr2 8144445 8144650 + 5.97975 NA Intergenic Intergenic -27602 NR_015405 339788 Hs.46864 NR_015405 ENSG00000235665 LINC00298 - long intergenic non-protein coding RNA 298 ncRNA 13-PTNLD9-TUMOR_peak_9324 chr11 22814220 22814331 + 5.97975 NA intron (NM_005256, intron 6 of 6) intron (NM_005256, intron 6 of 6) 37107 NM_148893 258010 Hs.349096 NM_148893 SVIP - small VCP/p97-interacting protein protein-coding 13-PTNLD9-TUMOR_peak_11479 chr11 123036947 123037041 + 5.97975 NA intron (NM_024769, intron 1 of 6) intron (NM_024769, intron 1 of 6) 29013 NM_024769 79827 Hs.591949 NM_024769 HPRD:16513 CLMP ACAM|ASAM|CSBM|CSBS CXADR-like membrane protein protein-coding 13-PTNLD9-TUMOR_peak_39918 chr4 181591020 181591114 + 5.97975 NA Intergenic Intergenic 489235 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 13-PTNLD9-TUMOR_peak_47821 chr7 71091267 71091433 + 5.97975 NA intron (NM_022479, intron 6 of 10) MLT1B|LTR|ERVL-MaLR -318594 NR_037477 100500836 NR_037477 miRBase:MI0016419 MIR3914-1 - microRNA 3914-1 ncRNA 13-PTNLD9-TUMOR_peak_28511 chr2 133188610 133188769 + 5.97975 NA intron (NM_001508, intron 1 of 1) intron (NM_001508, intron 1 of 1) 14542 NM_001508 2863 Hs.432395 NM_001508 HPRD:04198 GPR39 - G protein-coupled receptor 39 protein-coding 13-PTNLD9-TUMOR_peak_44912 chr6 39134310 39134421 + 5.97975 NA Intergenic Intergenic -51500 NM_018322 55776 Hs.58382 NM_018322 HPRD:12892 SAYSD1 C6orf64 SAYSVFN motif domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_19041 chr16 30969105 30969295 + 5.97975 NA 5' UTR (NM_014712, exon 1 of 19) 5' UTR (NM_014712, exon 1 of 19) 585 NM_014712 9739 Hs.297483 NM_014712 HPRD:13795 SETD1A KMT2F|Set1|Set1A SET domain containing 1A protein-coding 13-PTNLD9-TUMOR_peak_52274 chr8 139509418 139509577 + 5.97975 NA promoter-TSS (NM_015912) promoter-TSS (NM_015912) -432 NM_015912 51059 Hs.126024 NM_015912 HPRD:14230 FAM135B C8ORFK32 family with sequence similarity 135, member B protein-coding 13-PTNLD9-TUMOR_peak_32231 chr21 36604972 36605071 + 5.97975 NA Intergenic Intergenic -183426 NM_001754 861 Hs.149261 NM_001754 HPRD:01043 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBFA2|EVI-1|PEBP2aB runt-related transcription factor 1 protein-coding 13-PTNLD9-TUMOR_peak_20851 chr17 31568457 31568656 + 5.97975 NA intron (NM_001094, intron 1 of 9) LTR79|LTR|ERVL 51450 NM_183377 40 Hs.368417 NM_001094 HPRD:03471 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid-sensing (proton-gated) ion channel 2 protein-coding 13-PTNLD9-TUMOR_peak_26198 chr2 16240289 16240448 + 5.97975 NA Intergenic MIRc|SINE|MIR -158523 NR_110230 10408 Hs.651453 NM_006316 ENSG00000233718 MYCNOS MYCN-AS1|N-CYM|NCYM|NYCM MYCN opposite strand ncRNA 13-PTNLD9-TUMOR_peak_19864 chr16 81027013 81027166 + 5.97975 NA intron (NM_020188, intron 2 of 3) L1MEc|LINE|L1 -13014 NM_001270474 55839 Hs.726537 NM_018455 HPRD:12528 CENPN BM039|C16orf60|CENP-N|ICEN32 centromere protein N protein-coding 13-PTNLD9-TUMOR_peak_2070 chr1 64604184 64604281 + 5.97975 NA intron (NM_001083592, intron 5 of 6) AluYc|SINE|Alu -24758 NR_110665 101927034 Hs.680824 NR_110665 ENSG00000223949 ROR1-AS1 - ROR1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_46867 chr7 7455999 7456112 + 5.97975 NA intron (NM_001037763, intron 27 of 34) intron (NM_001037763, intron 27 of 34) 119405 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen, type XXVIII, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_51305 chr8 94916564 94916704 + 5.97975 NA Intergenic Intergenic 11713 NR_039602 100616169 NR_039602 miRBase:MI0003840 MIR378D2 - microRNA 378d-2 ncRNA 13-PTNLD9-TUMOR_peak_7374 chr10 52271616 52271920 + 5.97975 NA intron (NM_147156, intron 3 of 10) L2c|LINE|L2 111969 NM_147156 259230 Hs.654698 NM_147156 HPRD:18203 SGMS1 MOB|MOB1|SMS1|TMEM23|hmob33 sphingomyelin synthase 1 protein-coding 13-PTNLD9-TUMOR_peak_3038 chr1 117932048 117932208 + 5.97975 NA intron (NM_006699, intron 1 of 12) MER1B|DNA|hAT-Charlie 22043 NM_006699 10905 Hs.435938 NM_006699 MAN1A2 MAN1B mannosidase, alpha, class 1A, member 2 protein-coding 13-PTNLD9-TUMOR_peak_39596 chr4 149698258 149698354 + 5.97975 NA Intergenic Intergenic -334634 NM_001166104 4306 Hs.163924 NM_000901 HPRD:02991 NR3C2 MCR|MLR|MR|NR3C2VIT nuclear receptor subfamily 3, group C, member 2 protein-coding 13-PTNLD9-TUMOR_peak_17703 chr15 76239527 76239775 + 5.97975 NA intron (NM_138573, intron 5 of 5) LTR43|LTR|ERV1 -14180 NR_003136 692224 Hs.591115 NR_003136 FBXO22-AS1 FBXO22OS|FISTC1OS|HsT18082|NCRNA00053 FBXO22 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_29965 chr2 228736287 228736481 + 5.97975 NA promoter-TSS (NM_178821) promoter-TSS (NM_178821) 57 NM_178821 164781 Hs.424594 NM_178821 HPRD:08079 DAW1 ODA16|WDR69 dynein assembly factor with WDR repeat domains 1 protein-coding 13-PTNLD9-TUMOR_peak_26239 chr2 19131650 19131831 + 5.97975 NA Intergenic Intergenic -360894 NM_001199088 93034 Hs.744358 NM_033253 HPRD:11405 NT5C1B AIRP|CN-IB|CN1B 5'-nucleotidase, cytosolic IB protein-coding 13-PTNLD9-TUMOR_peak_9669 chr11 45793548 45793707 + 5.97975 NA non-coding (NR_027134, exon 2 of 2) non-coding (NR_027134, exon 2 of 2) 644 NR_027134 374387 Hs.632142 NM_199137 ENSG00000205106 DKFZp779M0652 - uncharacterized DKFZp779M0652 ncRNA 13-PTNLD9-TUMOR_peak_20882 chr17 33905590 33905700 + 5.97975 NA promoter-TSS (NM_000286) promoter-TSS (NM_000286) 11 NM_000286 5193 Hs.591190 NM_000286 HPRD:03455 PEX12 PAF-3|PBD3A peroxisomal biogenesis factor 12 protein-coding 13-PTNLD9-TUMOR_peak_20865 chr17 33308171 33308304 + 5.97975 NA intron (NM_002311, intron 1 of 19) CpG 720 NM_013975 3980 Hs.100299 NM_002311 HPRD:02966 LIG3 LIG2 ligase III, DNA, ATP-dependent protein-coding 13-PTNLD9-TUMOR_peak_33883 chr3 14302795 14302896 + 5.97975 NA Intergenic Intergenic 82617 NM_014463 27258 Hs.111632 NM_014463 LSM3 SMX4|USS2|YLR438C LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_7540 chr10 67108524 67108646 + 5.97975 NA Intergenic LTR9B|LTR|ERV1 -222598 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 13-PTNLD9-TUMOR_peak_48471 chr7 99457963 99458296 + 5.97975 NA intron (NM_001278921, intron 7 of 9) LTR84a|LTR|ERVL 16527 NM_001005276 81392 Hs.647523 NM_001005276 HPRD:14934 OR2AE1 OR2AE2 olfactory receptor, family 2, subfamily AE, member 1 protein-coding 13-PTNLD9-TUMOR_peak_52360 chr8 142402653 142402990 + 5.97975 NA Intergenic Intergenic -25456 NM_005293 2843 Hs.188859 NM_005293 HPRD:03550 GPR20 - G protein-coupled receptor 20 protein-coding 13-PTNLD9-TUMOR_peak_34952 chr3 72173170 72173435 + 5.97975 NA Intergenic Intergenic -23696 NR_104116 285286 Hs.559386 NR_104116 LINC00877 - long intergenic non-protein coding RNA 877 ncRNA 13-PTNLD9-TUMOR_peak_49944 chr8 1703861 1704006 + 5.97975 NA Intergenic Intergenic -7937 NM_018941 2055 Hs.127675 NM_018941 HPRD:06383 CLN8 C8orf61|EPMR ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation) protein-coding 13-PTNLD9-TUMOR_peak_24421 chr19 18768637 18768731 + 5.97975 NA intron (NM_018316, intron 1 of 2) intron (NM_018316, intron 1 of 2) 20846 NM_018316 55295 Hs.250632 NM_018316 HPRD:07728 KLHL26 - kelch-like family member 26 protein-coding 13-PTNLD9-TUMOR_peak_50100 chr8 12142481 12142578 + 5.97975 NA Intergenic HERVE-int|LTR|ERV1 33296 NM_001037804 245940 Hs.581979 NM_001037804 ENSG00000232948 DEFB130 DEFB-30|DEFB130L defensin, beta 130 protein-coding 13-PTNLD9-TUMOR_peak_48756 chr7 106267440 106267594 + 5.97975 NA Intergenic AluJr|SINE|Alu 34117 NM_175884 168455 Hs.29692 NM_175884 HPRD:08202 CCDC71L C7orf74 coiled-coil domain containing 71-like protein-coding 13-PTNLD9-TUMOR_peak_28465 chr2 132088632 132088759 + 5.97975 NA Intergenic (CGG)n|Simple_repeat|Simple_repeat 33036 NM_001077637 150786 Hs.645670 NM_001077637 WTH3DI - RAB6C-like protein-coding 13-PTNLD9-TUMOR_peak_13346 chr12 72410904 72411078 + 5.97975 NA intron (NM_173353, intron 8 of 10) intron (NM_173353, intron 8 of 10) 78365 NM_173353 121278 Hs.736576 NM_173353 HPRD:09594 TPH2 ADHD7|NTPH tryptophan hydroxylase 2 protein-coding 13-PTNLD9-TUMOR_peak_480 chr1 15058643 15058748 + 5.97975 NA intron (NM_201628, intron 1 of 14) MER119|DNA|hAT-Charlie 133482 NM_201628 23254 Hs.368823 NM_015209 HPRD:11122 KAZN KAZ kazrin, periplakin interacting protein protein-coding 13-PTNLD9-TUMOR_peak_25367 chr19 49804479 49804743 + 5.97975 NA intron (NM_014037, intron 7 of 11) L1M3c|LINE|L1 7514 NR_036209 100422979 NR_036209 MIR4324 - microRNA 4324 ncRNA 13-PTNLD9-TUMOR_peak_8622 chr10 131105454 131105568 + 5.97975 NA Intergenic Intergenic -159943 NM_002412 4255 Hs.501522 NM_002412 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 13-PTNLD9-TUMOR_peak_55591 chrX 17423476 17423623 + 5.97975 NA intron (NM_001291867, intron 1 of 8) intron (NM_001291867, intron 1 of 8) -20455 NR_039925 100616249 NR_039925 MIR4768 - microRNA 4768 ncRNA 13-PTNLD9-TUMOR_peak_24617 chr19 29768158 29768326 + 5.97975 NA Intergenic MER74A|LTR|ERVL -64106 NM_006003 7386 Hs.743307 NM_006003 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 13-PTNLD9-TUMOR_peak_45920 chr6 112365002 112365119 + 5.97975 NA Intergenic Intergenic -10218 NM_003880 8838 Hs.558428 NM_003880 HPRD:04550 WISP3 CCN6|LIBC|PPAC|PPD WNT1 inducible signaling pathway protein 3 protein-coding 13-PTNLD9-TUMOR_peak_6696 chr10 24599244 24599338 + 5.97975 NA intron (NM_001282767, intron 2 of 18) MIR|SINE|MIR 34677 NR_030334 693188 NR_030334 MIR603 MIRN603|hsa-mir-603 microRNA 603 ncRNA 13-PTNLD9-TUMOR_peak_47121 chr7 27717642 27717819 + 5.97975 NA Intergenic MER68|LTR|ERVL -15110 NM_152740 11112 Hs.406758 NM_152740 HPRD:12238 HIBADH NS5ATP1 3-hydroxyisobutyrate dehydrogenase protein-coding 13-PTNLD9-TUMOR_peak_14683 chr13 44642399 44642530 + 5.97975 NA Intergenic MIR|SINE|MIR -42221 NR_104065 101929212 Hs.534877 NR_104064 SMIM2-AS1 C13orf44-AS1|C3orf81-AS1 SMIM2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_30779 chr20 31340518 31340641 + 5.97975 NA Intergenic MIR3|SINE|MIR -8765 NM_053041 149951 Hs.408427 NM_053041 HPRD:13085 COMMD7 C20orf92|dJ1085F17.3 COMM domain containing 7 protein-coding 13-PTNLD9-TUMOR_peak_44069 chr6 20631263 20631381 + 5.97975 NA intron (NM_017774, intron 4 of 15) intron (NM_017774, intron 4 of 15) 96634 NM_017774 54901 Hs.657604 NM_017774 HPRD:13022 CDKAL1 - CDK5 regulatory subunit associated protein 1-like 1 protein-coding 13-PTNLD9-TUMOR_peak_7795 chr10 77268332 77268448 + 5.97975 NA Intergenic Intergenic 99475 NR_110304 101929234 Hs.694695 NR_110304 ENSG00000272692 LOC101929234 - uncharacterized LOC101929234 ncRNA 13-PTNLD9-TUMOR_peak_29113 chr2 174267196 174267349 + 5.97975 NA Intergenic Intergenic 47711 NM_145810 83879 Hs.470654 NM_031942 HPRD:09874 CDCA7 JPO1 cell division cycle associated 7 protein-coding 13-PTNLD9-TUMOR_peak_42168 chr5 134987038 134987189 + 5.97975 NA intron (NR_027127, intron 2 of 2) LTR41|LTR|ERVL 2511 NR_027127 340074 Hs.434633 NR_027127 ENSG00000251045 LOC340074 - uncharacterized LOC340074 ncRNA 13-PTNLD9-TUMOR_peak_14916 chr13 80623002 80623115 + 5.97975 NA Intergenic Intergenic 37846 NR_104138 101515984 Hs.569290 NR_104138 LINC01080 TCONS_00021856 long intergenic non-protein coding RNA 1080 ncRNA 13-PTNLD9-TUMOR_peak_38838 chr4 88428549 88428860 + 5.97975 NA intron (NM_001128310, intron 1 of 11) MER21A|LTR|ERVL 21951 NM_001128310 8404 Hs.62886 NM_004684 HPRD:06919 SPARCL1 MAST 9|MAST9|PIG33|SC1 SPARC-like 1 (hevin) protein-coding 13-PTNLD9-TUMOR_peak_15279 chr14 21876496 21876597 + 5.97975 NA exon (NM_001170629, exon 12 of 37) exon (NM_001170629, exon 12 of 37) -10986 NR_002916 319103 Hs.680078 NR_002916 SNORD8 RNU6C|mgU6-53 small nucleolar RNA, C/D box 8 snoRNA 13-PTNLD9-TUMOR_peak_10692 chr11 76445058 76445174 + 5.97975 NA Intergenic Intergenic -12283 NR_024042 390226 Hs.440026 NR_024042 GUCY2EP GC-E|GCD|GUCY2E guanylate cyclase 2E, pseudogene pseudo 13-PTNLD9-TUMOR_peak_22596 chr18 10798944 10799038 + 5.97975 NA intron (NM_022068, intron 11 of 51) intron (NM_022068, intron 11 of 51) 137061 NR_110777 101927410 Hs.436902 NR_110777 ENSG00000260779 LOC101927410 - uncharacterized LOC101927410 ncRNA 13-PTNLD9-TUMOR_peak_15455 chr14 31699074 31699184 + 5.97975 NA Intergenic Intergenic -22400 NM_015382 25831 Hs.708017 NM_015382 HPRD:17098 HECTD1 EULIR HECT domain containing E3 ubiquitin protein ligase 1 protein-coding 13-PTNLD9-TUMOR_peak_54205 chr9 101636437 101636537 + 5.97975 NA Intergenic Intergenic 66506 NM_024642 79695 Hs.47099 NM_024642 HPRD:13561 GALNT12 CRCS1|GalNAc-T12 polypeptide N-acetylgalactosaminyltransferase 12 protein-coding 13-PTNLD9-TUMOR_peak_20805 chr17 28804378 28804474 + 5.97975 NA promoter-TSS (NM_001007025) promoter-TSS (NM_001007025) 0 NM_001007025 9527 Hs.462680 NM_004871 ENSG00000108587 GOSR1 GOLIM2|GOS-28|GOS28|GOS28/P28|GS28|P28 golgi SNAP receptor complex member 1 protein-coding 13-PTNLD9-TUMOR_peak_42803 chr5 157883843 157883958 + 5.97975 NA Intergenic Intergenic -47119 NR_109888 101927697 Hs.483960 NR_109888 LOC101927697 - uncharacterized LOC101927697 ncRNA 13-PTNLD9-TUMOR_peak_52834 chr9 18379255 18379382 + 5.97975 NA Intergenic LTR54B|LTR|ERV1 -94761 NM_052866 92949 Hs.741483 NM_052866 HPRD:16462 ADAMTSL1 ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN ADAMTS-like 1 protein-coding 13-PTNLD9-TUMOR_peak_39122 chr4 114758738 114758832 + 5.97975 NA Intergenic Intergenic -75702 NM_001221 817 Hs.144114 NM_001221 HPRD:09653 CAMK2D CAMKD calcium/calmodulin-dependent protein kinase II delta protein-coding 13-PTNLD9-TUMOR_peak_39730 chr4 157397563 157397747 + 5.97975 NA Intergenic L2a|LINE|L2 494891 NM_016205 56034 Hs.570855 NM_016205 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 13-PTNLD9-TUMOR_peak_42976 chr5 170582798 170582911 + 5.97975 NA intron (NM_022897, intron 14 of 27) intron (NM_022897, intron 14 of 27) -153434 NM_021025 30012 Hs.249125 NM_021025 HPRD:06868 TLX3 HOX11L2|RNX T-cell leukemia homeobox 3 protein-coding 13-PTNLD9-TUMOR_peak_5360 chr1 212606124 212606296 + 5.97975 NA promoter-TSS (NR_026598) promoter-TSS (NR_026598) -19 NR_026598 29937 Hs.461787 NM_013349 HPRD:11603 NENF CIR2|SCIRP10|SPUF neudesin neurotrophic factor protein-coding 13-PTNLD9-TUMOR_peak_13206 chr12 66539016 66539110 + 5.97975 NA intron (NM_001282610, intron 5 of 6) intron (NM_001282610, intron 5 of 6) -14530 NM_032338 84298 Hs.504820 NM_032338 HPRD:11308 LLPH C12orf31|hLLP LLP homolog, long-term synaptic facilitation (Aplysia) protein-coding 13-PTNLD9-TUMOR_peak_55699 chrX 33229667 33229761 + 5.97975 NA promoter-TSS (NM_004006) promoter-TSS (NM_004006) -41 NM_004006 1756 Hs.495912 NM_000109 HPRD:02303 DMD BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272|MRX85 dystrophin protein-coding 13-PTNLD9-TUMOR_peak_21352 chr17 46314157 46314302 + 5.97975 NA intron (NM_003726, intron 4 of 12) intron (NM_003726, intron 4 of 12) -80356 NR_031607 100302211 NR_031607 MIR1203 MIRN1203|hsa-mir-1203 microRNA 1203 ncRNA 13-PTNLD9-TUMOR_peak_41250 chr5 72708563 72708700 + 5.97975 NA Intergenic Intergenic 35721 NM_004472 2297 Hs.519385 NM_004472 HPRD:03055 FOXD1 FKHL8|FREAC-4|FREAC4 forkhead box D1 protein-coding 13-PTNLD9-TUMOR_peak_14349 chr12 132991626 132991720 + 5.97975 NA Intergenic Intergenic -75484 NM_001142641 57666 Hs.411138 NM_001142641 ENSG00000112787 FBRSL1 - fibrosin-like 1 protein-coding 13-PTNLD9-TUMOR_peak_601 chr1 20559300 20559394 + 5.97975 NA Intergenic MER11A|LTR|ERVK -46368 NR_110078 101928017 Hs.550803 NR_110078 UBXN10-AS1 - UBXN10 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_17622 chr15 73831670 73831781 + 5.97975 NA intron (NM_001042367, intron 2 of 5) AluY|SINE|Alu 30159 NR_103844 101241892 Hs.656678 NR_103844 NPTN-IT1 lncRNA-LET NPTN intronic transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_22990 chr18 39984235 39984337 + 5.97975 NA intron (NR_046456, intron 5 of 7) intron (NR_046456, intron 5 of 7) 217653 NR_046457 284260 Hs.652819 NR_046174 ENSG00000267586 LINC00907 - long intergenic non-protein coding RNA 907 ncRNA 13-PTNLD9-TUMOR_peak_27128 chr2 66683595 66683738 + 5.97975 NA intron (NM_002398, intron 6 of 12) intron (NM_002398, intron 6 of 12) 21134 NM_002398 4211 Hs.526754 NM_002398 HPRD:03442 MEIS1 - Meis homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_50757 chr8 42547773 42547875 + 5.97975 NA Intergenic Intergenic -4738 NM_000749 1142 Hs.654576 NM_000749 HPRD:00336 CHRNB3 - cholinergic receptor, nicotinic, beta 3 (neuronal) protein-coding 13-PTNLD9-TUMOR_peak_30171 chr2 240752297 240752403 + 5.97975 NA Intergenic Intergenic 67796 NR_037808 150935 Hs.555582 NR_037808 LOC150935 - uncharacterized LOC150935 ncRNA 13-PTNLD9-TUMOR_peak_21515 chr17 50461024 50461118 + 5.97975 NA Intergenic Intergenic -223694 NM_001082534 56934 Hs.463466 NM_020178 HPRD:05224 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase X protein-coding 13-PTNLD9-TUMOR_peak_33978 chr3 16743406 16743556 + 5.97975 NA Intergenic Intergenic -96475 NM_001351 1618 Hs.131179 NM_001351 HPRD:09029 DAZL DAZH|DAZL1|DAZLA|SPGYLA deleted in azoospermia-like protein-coding 13-PTNLD9-TUMOR_peak_50571 chr8 32986973 32987176 + 5.97975 NA Intergenic LTR10D|LTR|ERV1 343590 NM_032664 84750 Hs.458713 NM_032664 ENSG00000172728 FUT10 - fucosyltransferase 10 (alpha (1,3) fucosyltransferase) protein-coding 13-PTNLD9-TUMOR_peak_29478 chr2 198834457 198834560 + 5.97975 NA intron (NM_006226, intron 1 of 5) MLT1I|LTR|ERVL-MaLR 165082 NM_006226 5334 Hs.153322 NM_006226 PLCL1 PLCE|PLCL|PLDL1|PPP1R127|PRIP phospholipase C-like 1 protein-coding 13-PTNLD9-TUMOR_peak_26078 chr2 10147138 10147244 + 5.97975 NA Intergenic Intergenic -36491 NM_003597 8462 Hs.12229 NM_003597 HPRD:04488 KLF11 FKLF|FKLF1|MODY7|TIEG2|Tieg3 Kruppel-like factor 11 protein-coding 13-PTNLD9-TUMOR_peak_23184 chr18 47951593 47951854 + 5.97975 NA Intergenic LTR76|LTR|ERV1 50331 NM_001039535 220134 Hs.134726 NM_145060 HPRD:12689 SKA1 C18orf24 spindle and kinetochore associated complex subunit 1 protein-coding 13-PTNLD9-TUMOR_peak_50660 chr8 38739209 38739378 + 5.97975 NA Intergenic AluJo|SINE|Alu -19460 NM_021623 59339 Hs.369123 NM_021623 ENSG00000169499 PLEKHA2 TAPP2 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 2 protein-coding 13-PTNLD9-TUMOR_peak_4894 chr1 200045418 200045561 + 5.97975 NA intron (NM_205860, intron 5 of 7) intron (NM_205860, intron 5 of 7) 33536 NM_001276464 2494 Hs.33446 NM_003822 HPRD:06830 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5, group A, member 2 protein-coding 13-PTNLD9-TUMOR_peak_14912 chr13 80341327 80341556 + 5.97975 NA Intergenic MIR|SINE|MIR -37080 NR_125785 102724076 Hs.208617 NR_125785 LINC01038 - long intergenic non-protein coding RNA 1038 ncRNA 13-PTNLD9-TUMOR_peak_17245 chr15 48388719 48389229 + 5.97975 NA Intergenic Intergenic -24195 NM_205850 283652 Hs.710240 NM_205850 HPRD:18055 SLC24A5 JSX|NCKX5|OCA6|SHEP4 solute carrier family 24 (sodium/potassium/calcium exchanger), member 5 protein-coding 13-PTNLD9-TUMOR_peak_40703 chr5 41246578 41246672 + 5.97975 NA intron (NM_001115131, intron 1 of 17) intron (NM_001115131, intron 1 of 17) 14915 NM_001115131 729 Hs.481992 NM_000065 HPRD:01956 C6 - complement component 6 protein-coding 13-PTNLD9-TUMOR_peak_26447 chr2 28886344 28886448 + 5.97975 NA Intergenic Intergenic -88218 NM_206876 5500 Hs.702907 NM_002709 HPRD:11792 PPP1CB HEL-S-80p|PP-1B|PP1B|PP1beta|PPP1CD protein phosphatase 1, catalytic subunit, beta isozyme protein-coding 13-PTNLD9-TUMOR_peak_21832 chr17 65091534 65091743 + 5.97975 NA intron (NM_014877, intron 31 of 32) AluJr|SINE|Alu 50986 NM_000727 786 Hs.147989 NM_000727 HPRD:00249 CACNG1 CACNLG calcium channel, voltage-dependent, gamma subunit 1 protein-coding 13-PTNLD9-TUMOR_peak_33319 chr22 41079104 41079330 + 5.97975 NA TTS (NM_005297) TTS (NM_005297) 4035 NM_005297 2847 Hs.248122 NM_005297 HPRD:11874 MCHR1 GPR24|MCH-1R|MCH1R|SLC-1|SLC1 melanin-concentrating hormone receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_43828 chr6 12749430 12749533 + 5.97975 NA intron (NM_030948, intron 3 of 14) intron (NM_030948, intron 3 of 14) 32444 NM_030948 221692 Hs.436996 NM_030948 PHACTR1 RPEL|RPEL1|dJ257A7.2 phosphatase and actin regulator 1 protein-coding 13-PTNLD9-TUMOR_peak_56373 chrX 114628055 114628246 + 5.97975 NA Intergenic MIR3|SINE|MIR 103867 NM_016383 51213 Hs.242183 NM_016383 HPRD:06589 LUZP4 CT-28|CT-8|CT28|HOM-TES-85 leucine zipper protein 4 protein-coding 13-PTNLD9-TUMOR_peak_32047 chr21 28796692 28796829 + 5.97975 NA intron (NR_049807, intron 3 of 4) LTR35A|LTR|ERV1 -297938 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 13-PTNLD9-TUMOR_peak_39592 chr4 149191780 149191889 + 5.97975 NA intron (NM_000901, intron 2 of 8) intron (NM_000901, intron 2 of 8) 171838 NM_000901 4306 Hs.163924 NM_000901 HPRD:02991 NR3C2 MCR|MLR|MR|NR3C2VIT nuclear receptor subfamily 3, group C, member 2 protein-coding 13-PTNLD9-TUMOR_peak_37776 chr4 6529134 6529253 + 5.97975 NA intron (NM_001206995, intron 2 of 9) intron (NM_001206995, intron 2 of 9) 28212 NM_001206995 5522 Hs.479069 NM_020416 HPRD:09345 PPP2R2C B55-GAMMA|IMYPNO|IMYPNO1|PR52|PR55G protein phosphatase 2, regulatory subunit B, gamma protein-coding 13-PTNLD9-TUMOR_peak_29183 chr2 177447764 177447867 + 5.97975 NA Intergenic Intergenic 17965 NR_031648 100302142 NR_031648 MIR1246 MIRN1246|hsa-mir-1246 microRNA 1246 ncRNA 13-PTNLD9-TUMOR_peak_29270 chr2 182883057 182883237 + 5.97975 NA intron (NM_001080545, intron 2 of 4) intron (NM_001080545, intron 2 of 4) 32596 NM_001261425 151242 Hs.10941 NM_001080545 ENSG00000150722 PPP1R1C IPP5 protein phosphatase 1, regulatory (inhibitor) subunit 1C protein-coding 13-PTNLD9-TUMOR_peak_10491 chr11 70699414 70699522 + 5.97975 NA intron (NM_012309, intron 8 of 22) intron (NM_012309, intron 8 of 22) -9427 NR_073536 220070 Hs.326766 NM_145308 HPRD:14132 SHANK2-AS3 C11orf76 SHANK2 antisense RNA 3 ncRNA 13-PTNLD9-TUMOR_peak_51963 chr8 127889025 127889144 + 5.97975 NA Intergenic Intergenic -136315 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_34046 chr3 22403092 22403186 + 5.97975 NA Intergenic Intergenic 404508 NR_046876 100874221 Hs.160616 NR_046876 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_43731 chr6 10300397 10300574 + 5.97975 NA Intergenic Intergenic -112066 NR_033910 100130275 Hs.661431 NR_033910 TFAP2A-AS1 - TFAP2A antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_16547 chr14 99297933 99298039 + 5.97975 NA Intergenic Intergenic 120036 NM_182560 283598 Hs.448754 NM_182560 HPRD:08075 C14orf177 - chromosome 14 open reading frame 177 protein-coding 13-PTNLD9-TUMOR_peak_10800 chr11 84529227 84529321 + 5.97975 NA intron (NM_001142699, intron 6 of 27) intron (NM_001142699, intron 6 of 27) 105191 NM_001300983 1740 Hs.367656 NM_001364 HPRD:04663 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs, large homolog 2 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_29909 chr2 224330507 224330802 + 5.97975 NA Intergenic LTR78B|LTR|ERV1 136563 NM_003469 7857 Hs.516726 NM_003469 HPRD:06762 SCG2 CHGC|EM66|SN|SgII secretogranin II protein-coding 13-PTNLD9-TUMOR_peak_14661 chr13 42483795 42483890 + 5.97975 NA intron (NM_001009814, intron 3 of 25) intron (NM_001009814, intron 3 of 25) 51379 NM_001009814 23078 Hs.368282 NM_015058 HPRD:17194 VWA8 KIAA0564 von Willebrand factor A domain containing 8 protein-coding 13-PTNLD9-TUMOR_peak_55701 chrX 34216221 34216412 + 5.97975 NA Intergenic LTR16B1|LTR|ERVL -65869 NM_203408 158724 Hs.143268 NM_203408 HPRD:10947 FAM47A - family with sequence similarity 47, member A protein-coding 13-PTNLD9-TUMOR_peak_7178 chr10 44834790 44834901 + 5.97975 NA Intergenic Intergenic 45700 NM_000609 6387 Hs.522891 NM_000609 HPRD:02904 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 chemokine (C-X-C motif) ligand 12 protein-coding 13-PTNLD9-TUMOR_peak_17178 chr15 44301397 44301491 + 5.97975 NA intron (NR_104455, intron 1 of 14) intron (NR_104455, intron 1 of 14) -131075 NR_003571 728758 Hs.658099 NR_003571 PIN4P1 - protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_14999 chr13 99630644 99630782 + 5.97975 NA promoter-TSS (NM_001130048) promoter-TSS (NM_001130048) -375 NM_001130050 23348 Hs.596105 NM_015296 HPRD:09542 DOCK9 ZIZ1|ZIZIMIN1 dedicator of cytokinesis 9 protein-coding 13-PTNLD9-TUMOR_peak_42103 chr5 133625280 133625487 + 5.97975 NA Intergenic Intergenic -63433 NM_002715 5515 Hs.105818 NM_002715 PPP2CA PP2Ac|PP2CA|PP2Calpha|RP-C protein phosphatase 2, catalytic subunit, alpha isozyme protein-coding 13-PTNLD9-TUMOR_peak_13481 chr12 93571757 93571852 + 5.97975 NA intron (NR_120492, intron 2 of 2) LTR19B|LTR|ERV1 3662 NR_120492 102724933 Hs.663947 NR_120492 LOC102724933 - uncharacterized LOC102724933 ncRNA 13-PTNLD9-TUMOR_peak_43725 chr6 9523842 9523936 + 5.97975 NA Intergenic Intergenic 871447 NR_004855 728655 Hs.214343 NR_004855 ENSG00000251164 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 13-PTNLD9-TUMOR_peak_7931 chr10 88014351 88014445 + 5.97975 NA intron (NM_017551, intron 2 of 15) intron (NM_017551, intron 2 of 15) 10147 NR_029907 442911 NR_029907 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 13-PTNLD9-TUMOR_peak_23677 chr19 2872340 2872434 + 5.97975 NA intron (NM_001300843, intron 1 of 3) LTR13|LTR|ERVK 5054 NM_001300843 80032 Hs.287433 NM_024967 HPRD:15839 ZNF556 - zinc finger protein 556 protein-coding 13-PTNLD9-TUMOR_peak_44534 chr6 31409514 31409640 + 5.97975 NA Intergenic Intergenic -21380 NR_040662 10866 Hs.691948 NR_040662 HCP5 6S2650E|D6S2650E|P5-1 HLA complex P5 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_23635 chr19 1747508 1747824 + 5.97975 NA Intergenic Intergenic -5996 NM_001080488 390874 Hs.654347 NM_001080488 ONECUT3 OC3 one cut homeobox 3 protein-coding 13-PTNLD9-TUMOR_peak_31061 chr20 39489340 39489484 + 5.97975 NA Intergenic MIR|SINE|MIR -168050 NM_003286 7150 Hs.472737 NM_003286 HPRD:00535 TOP1 TOPI topoisomerase (DNA) I protein-coding 13-PTNLD9-TUMOR_peak_54416 chr9 112839306 112839400 + 5.97975 NA intron (NM_001004065, intron 1 of 3) intron (NM_001004065, intron 1 of 3) 28475 NM_001198656 11217 Hs.591908 NM_001004065 ENSG00000241978 AKAP2 AKAP-2|AKAPKL|PRKA2 A kinase (PRKA) anchor protein 2 protein-coding 13-PTNLD9-TUMOR_peak_42406 chr5 141590050 141590367 + 5.97975 NA Intergenic Intergenic 101884 NM_030571 80762 Hs.9788 NM_030571 HPRD:14816 NDFIP1 N4WBP5 Nedd4 family interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_29907 chr2 223906358 223906452 + 5.97975 NA Intergenic Intergenic -10243 NM_080671 23704 Hs.348522 NM_080671 HPRD:09689 KCNE4 MIRP3 potassium voltage-gated channel, Isk-related family, member 4 protein-coding 13-PTNLD9-TUMOR_peak_51886 chr8 126164070 126164173 + 5.97975 NA intron (NM_173685, intron 4 of 7) intron (NM_173685, intron 4 of 7) 60038 NM_173685 286053 Hs.388297 NM_173685 HPRD:08131 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 non-SMC element 2, MMS21 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_7925 chr10 87806875 87806969 + 5.97975 NA intron (NM_017551, intron 4 of 15) intron (NM_017551, intron 4 of 15) 217623 NR_029907 442911 NR_029907 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 13-PTNLD9-TUMOR_peak_41087 chr5 65965290 65965402 + 5.97975 NA intron (NM_198828, intron 1 of 5) intron (NM_198828, intron 1 of 5) 73170 NM_198828 375449 Hs.595458 NM_015183 HPRD:14195 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 13-PTNLD9-TUMOR_peak_46260 chr6 148887629 148887768 + 5.97975 NA Intergenic Intergenic -180573 NM_005715 10090 Hs.657370 NM_005715 HPRD:10298 UST 2OST uronyl-2-sulfotransferase protein-coding 13-PTNLD9-TUMOR_peak_10468 chr11 69851565 69851775 + 5.97975 NA Intergenic Intergenic 58360 NR_120530 101928443 Hs.313468 NR_120529 ENSG00000248844 LOC101928443 - uncharacterized LOC101928443 ncRNA 13-PTNLD9-TUMOR_peak_17774 chr15 81011153 81011265 + 5.97975 NA intron (NM_021214, intron 1 of 2) intron (NM_021214, intron 1 of 2) 23557 NM_021214 58489 Hs.459072 NM_021214 ENSG00000136379 ABHD17C FAM108C1 abhydrolase domain containing 17C protein-coding 13-PTNLD9-TUMOR_peak_45821 chr6 105876295 105876598 + 5.97975 NA Intergenic Intergenic -25447 NM_002726 5550 Hs.436564 NM_002726 HPRD:02673 PREP PE|PEP prolyl endopeptidase protein-coding 13-PTNLD9-TUMOR_peak_11031 chr11 100624071 100624165 + 5.97975 NA intron (NM_152432, intron 1 of 23) L1PBa|LINE|L1 65711 NM_152432 143872 Hs.741465 NM_152432 ENSG00000165895 ARHGAP42 GRAF3 Rho GTPase activating protein 42 protein-coding 13-PTNLD9-TUMOR_peak_14362 chr12 133562879 133563007 + 5.97975 NA promoter-TSS (NM_001256279) promoter-TSS (NM_001256279) 9 NM_001256280 7574 Hs.489608 NM_019591 HPRD:01922 ZNF26 HEL-179|KOX20 zinc finger protein 26 protein-coding 13-PTNLD9-TUMOR_peak_1647 chr1 47215885 47216001 + 5.97975 NA Intergenic Intergenic -31207 NM_014774 9813 Hs.707688 NM_014774 HPRD:17191 EFCAB14 KIAA0494 EF-hand calcium binding domain 14 protein-coding 13-PTNLD9-TUMOR_peak_23340 chr18 57594597 57594747 + 5.97975 NA Intergenic Intergenic 27480 NM_021127 5366 Hs.96 NM_021127 HPRD:12002 PMAIP1 APR|NOXA phorbol-12-myristate-13-acetate-induced protein 1 protein-coding 13-PTNLD9-TUMOR_peak_41648 chr5 102786371 102786602 + 5.97975 NA Intergenic Intergenic 91200 NR_104670 102467212 Hs.641885 NR_104670 LOC102467212 - uncharacterized LOC102467212 ncRNA 13-PTNLD9-TUMOR_peak_33245 chr22 38283882 38283986 + 5.97975 NA intron (NM_016091, intron 12 of 12) intron (NM_016091, intron 12 of 12) -18221 NM_033386 85377 Hs.517610 NM_033386 HPRD:11363 MICALL1 MICAL-L1|MIRAB13 MICAL-like 1 protein-coding 13-PTNLD9-TUMOR_peak_56032 chrX 62571234 62571443 + 5.97975 NA promoter-TSS (NM_001012968) promoter-TSS (NM_001012968) -120 NM_001012968 139886 Hs.612782 NM_001012968 HPRD:12556 SPIN4 - spindlin family, member 4 protein-coding 13-PTNLD9-TUMOR_peak_8264 chr10 105499214 105499382 + 5.97975 NA intron (NM_014631, intron 3 of 13) intron (NM_014631, intron 3 of 13) -7239 NR_038940 100505839 Hs.655149 NR_038940 SH3PXD2A-AS1 - SH3PXD2A antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_42187 chr5 135711790 135711896 + 5.97975 NA Intergenic Intergenic -10679 NM_001167576 57113 Hs.591263 NM_020389 HPRD:18228 TRPC7 TRP7 transient receptor potential cation channel, subfamily C, member 7 protein-coding 13-PTNLD9-TUMOR_peak_47805 chr7 69778305 69778433 + 5.97975 NA intron (NM_001127231, intron 4 of 17) intron (NM_001127231, intron 4 of 17) 714464 NM_001127231 26053 Hs.21631 NM_015570 HPRD:06276 AUTS2 FBRSL2|MRD26 autism susceptibility candidate 2 protein-coding 13-PTNLD9-TUMOR_peak_38069 chr4 20342837 20342931 + 5.97975 NA intron (NM_001289135, intron 4 of 35) intron (NM_001289135, intron 4 of 35) -50928 NR_037876 100505893 Hs.665305 NR_037876 SLIT2-IT1 - SLIT2 intronic transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_8658 chr10 134221501 134221632 + 5.97975 NA intron (NM_138499, intron 2 of 2) intron (NM_138499, intron 2 of 2) 10864 NM_001098637 170394 Hs.527751 NM_138499 HPRD:11465 PWWP2B PWWP2|bA432J24.1|pp8607 PWWP domain containing 2B protein-coding 13-PTNLD9-TUMOR_peak_41524 chr5 92585724 92585825 + 5.97975 NA Intergenic Intergenic 321275 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_33972 chr3 16380597 16380814 + 5.97975 NA intron (NM_015150, intron 7 of 9) intron (NM_015150, intron 7 of 9) 74038 NM_138381 92106 Hs.655449 NM_138381 HPRD:14446 OXNAD1 - oxidoreductase NAD-binding domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_4304 chr1 167533998 167534120 + 5.97975 NA Intergenic L2a|LINE|L2 -11003 NM_003851 8804 Hs.5710 NM_003851 HPRD:09897 CREG1 CREG cellular repressor of E1A-stimulated genes 1 protein-coding 13-PTNLD9-TUMOR_peak_14793 chr13 52810345 52810580 + 5.97975 NA Intergenic L1PA16|LINE|L1 -41860 NR_002816 100887750 Hs.553878 NR_002816 ENSG00000243406 MRPS31P5 MRPS31P3 mitochondrial ribosomal protein S31 pseudogene 5 pseudo 13-PTNLD9-TUMOR_peak_41573 chr5 96070757 96070859 + 5.97975 NA intron (NM_001042440, intron 7 of 29) intron (NM_001042440, intron 7 of 29) -8436 NR_104285 831 Hs.436186 NM_001750 HPRD:00233 CAST BS-17 calpastatin protein-coding 13-PTNLD9-TUMOR_peak_16680 chr14 105516888 105517055 + 5.97975 NA 3' UTR (NM_013345, exon 4 of 4) 3' UTR (NM_013345, exon 4 of 4) 14916 NM_001278696 29933 Hs.532504 NM_013345 HPRD:06936 GPR132 G2A G protein-coupled receptor 132 protein-coding 13-PTNLD9-TUMOR_peak_47349 chr7 44203321 44203415 + 5.97975 NA intron (NM_000162, intron 1 of 9) L1M4c|LINE|L1 -4481 NM_033508 2645 Hs.1270 NM_000162 HPRD:00680 GCK FGQTL3|GK|GLK|HHF3|HK4|HKIV|HXKP|LGLK|MODY2 glucokinase (hexokinase 4) protein-coding 13-PTNLD9-TUMOR_peak_54793 chr9 129720084 129720179 + 5.97975 NA intron (NM_001190730, intron 1 of 11) intron (NM_001190730, intron 1 of 11) -4373 NM_001190728 9649 Hs.432842 NM_014636 HPRD:11479 RALGPS1 RALGEF2|RALGPS1A Ral GEF with PH domain and SH3 binding motif 1 protein-coding 13-PTNLD9-TUMOR_peak_56976 chrY 16124835 16124960 + 5.97975 NA Intergenic L1PA2|LINE|L1 -26505 NM_004679 9084 Hs.632284 NM_004679 HPRD:02453 VCY BPY1|VCY1|VCY1A variable charge, Y-linked protein-coding 13-PTNLD9-TUMOR_peak_2083 chr1 65448901 65449021 + 5.97975 NA intron (NR_119383, intron 5 of 6) intron (NR_119383, intron 5 of 6) -16774 NM_002227 3716 Hs.207538 NM_002227 HPRD:00992 JAK1 JAK1A|JAK1B|JTK3 Janus kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_34297 chr3 39425010 39425165 + 5.97975 NA 5' UTR (NM_017875, exon 1 of 7) 5' UTR (NM_017875, exon 1 of 7) 272 NM_017875 54977 Hs.369615 NM_017875 HPRD:07925 SLC25A38 - solute carrier family 25, member 38 protein-coding 13-PTNLD9-TUMOR_peak_19510 chr16 63924097 63924258 + 5.97975 NA Intergenic Intergenic 1231742 NM_001797 1009 Hs.116471 NM_001797 CDH11 CAD11|CDHOB|OB|OSF-4 cadherin 11, type 2, OB-cadherin (osteoblast) protein-coding 13-PTNLD9-TUMOR_peak_55311 chrUn_gl000223 119658 119786 + 5.97975 NA promoter-TSS (NM_001256279).2 promoter-TSS (NM_001256279).2 8 NM_001256279 7574 Hs.489608 NM_019591 HPRD:01922 ZNF26 HEL-179|KOX20 zinc finger protein 26 protein-coding 13-PTNLD9-TUMOR_peak_574 chr1 18200857 18200953 + 5.97975 NA Intergenic L3|LINE|CR1 119097 NM_030812 81569 Hs.2149 NM_030812 HPRD:11274 ACTL8 CT57 actin-like 8 protein-coding 13-PTNLD9-TUMOR_peak_38117 chr4 25537009 25537135 + 5.97975 NA Intergenic Intergenic -120363 NM_001177998 10568 Hs.479372 NM_006424 HPRD:07251 SLC34A2 NAPI-3B|NAPI-IIb|NPTIIb solute carrier family 34 (type II sodium/phosphate contransporter), member 2 protein-coding 13-PTNLD9-TUMOR_peak_13088 chr12 60323031 60323128 + 5.97975 NA Intergenic L1MA3|LINE|L1 239961 NR_073056 9194 Hs.88156 NM_004731 HPRD:06791 SLC16A7 MCT2 solute carrier family 16 (monocarboxylate transporter), member 7 protein-coding 13-PTNLD9-TUMOR_peak_46130 chr6 138132587 138132717 + 5.97975 NA Intergenic Intergenic -55673 NM_001270508 7128 Hs.211600 NM_006290 HPRD:01857 TNFAIP3 A20|OTUD7C|TNFA1P2 tumor necrosis factor, alpha-induced protein 3 protein-coding 13-PTNLD9-TUMOR_peak_33321 chr22 41141208 41141320 + 5.97975 NA Intergenic SVA_E|Other|Other 66082 NM_005297 2847 Hs.248122 NM_005297 HPRD:11874 MCHR1 GPR24|MCH-1R|MCH1R|SLC-1|SLC1 melanin-concentrating hormone receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_2347 chr1 86214311 86214405 + 5.97975 NA intron (NM_152890, intron 55 of 59) L1HS|LINE|L1 -40242 NM_017953 54680 Hs.5111 NM_017953 HPRD:08630 ZNHIT6 BCD1|C1orf181|NY-BR-75 zinc finger, HIT-type containing 6 protein-coding 13-PTNLD9-TUMOR_peak_47372 chr7 44705266 44705370 + 5.97975 NA intron (NM_001003941, intron 4 of 8) intron (NM_001003941, intron 4 of 8) 59197 NM_002541 4967 Hs.488181 NM_002541 HPRD:08938 OGDH AKGDH|E1k|OGDC oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide) protein-coding 13-PTNLD9-TUMOR_peak_14705 chr13 45780603 45780803 + 5.97975 NA intron (NM_004128, intron 4 of 7) intron (NM_004128, intron 4 of 7) -5528 NM_198404 386618 Hs.23406 NM_198404 HPRD:13767 KCTD4 bA321C24.3 potassium channel tetramerization domain containing 4 protein-coding 13-PTNLD9-TUMOR_peak_16539 chr14 98383639 98383777 + 5.97975 NA Intergenic Intergenic 60753 NR_015430 388011 Hs.651477 NR_015430 ENSG00000246223 C14orf64 - chromosome 14 open reading frame 64 ncRNA 13-PTNLD9-TUMOR_peak_54932 chr9 133710133 133710242 + 5.97975 NA promoter-TSS (NM_005157) promoter-TSS (NM_005157) -455 NM_005157 25 Hs.431048 NM_005157 HPRD:01809 ABL1 ABL|JTK7|bcr/abl|c-ABL|c-ABL1|p150|v-abl ABL proto-oncogene 1, non-receptor tyrosine kinase protein-coding 13-PTNLD9-TUMOR_peak_8452 chr10 121013181 121013275 + 5.97975 NA intron (NM_005308, intron 1 of 15) intron (NM_005308, intron 1 of 15) 46031 NM_005308 2869 Hs.524625 NM_005308 HPRD:02926 GRK5 GPRK5 G protein-coupled receptor kinase 5 protein-coding 13-PTNLD9-TUMOR_peak_27390 chr2 84709060 84709168 + 5.97975 NA Intergenic Intergenic -22528 NM_003849 8802 Hs.270428 NM_003849 HPRD:18128 SUCLG1 GALPHA|MTDPS9|SUCLA1 succinate-CoA ligase, alpha subunit protein-coding 13-PTNLD9-TUMOR_peak_19495 chr16 59094243 59094445 + 5.97975 NA Intergenic MLT2B1|LTR|ERVL -326083 NM_001286220 2806 Hs.599470 NM_002080 HPRD:00684 GOT2 KAT4|KATIV|mitAAT glutamic-oxaloacetic transaminase 2, mitochondrial protein-coding 13-PTNLD9-TUMOR_peak_22121 chr17 75672336 75672507 + 5.97975 NA Intergenic Intergenic 52220 NR_104134 100132174 Hs.640110 NR_104134 LOC100132174 - uncharacterized LOC100132174 ncRNA 13-PTNLD9-TUMOR_peak_26987 chr2 56573033 56573226 + 5.97975 NA intron (NM_001080433, intron 3 of 5) intron (NM_001080433, intron 3 of 5) -160224 NR_125368 100129434 Hs.580330 NR_125368 ENSG00000233251 LOC100129434 - uncharacterized LOC100129434 ncRNA 13-PTNLD9-TUMOR_peak_22745 chr18 20122664 20122769 + 5.97975 NA Intergenic Intergenic -124838 NM_172241 64693 Hs.406709 NM_022663 HPRD:16395 CTAGE1 CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2 cutaneous T-cell lymphoma-associated antigen 1 protein-coding 13-PTNLD9-TUMOR_peak_33208 chr22 36938244 36938345 + 5.97975 NA Intergenic Intergenic -13017 NM_003753 8664 Hs.55682 NM_003753 HPRD:04888 EIF3D EIF3S7|eIF3-p66|eIF3-zeta eukaryotic translation initiation factor 3, subunit D protein-coding 13-PTNLD9-TUMOR_peak_50054 chr8 9174550 9174728 + 5.97975 NA Intergenic Intergenic -7922 NR_040039 157273 Hs.650222 NR_040039 ENSG00000254235 LOC157273 - uncharacterized LOC157273 ncRNA 13-PTNLD9-TUMOR_peak_15023 chr13 101701633 101701778 + 5.97975 NA non-coding (NR_047687, exon 5 of 8) non-coding (NR_047687, exon 5 of 8) -105087 NR_047015 100874161 Hs.143791 NR_047015 LINC00411 - long intergenic non-protein coding RNA 411 ncRNA 13-PTNLD9-TUMOR_peak_50330 chr8 23075738 23075839 + 5.97975 NA intron (NM_003844, intron 1 of 9) intron (NM_003844, intron 1 of 9) 6892 NM_003844 8797 Hs.213467 NM_003844 TNFRSF10A APO2|CD261|DR4|TRAILR-1|TRAILR1 tumor necrosis factor receptor superfamily, member 10a protein-coding 13-PTNLD9-TUMOR_peak_41375 chr5 77890952 77891205 + 5.97975 NA intron (NM_005779, intron 2 of 4) intron (NM_005779, intron 2 of 4) 53570 NM_005779 10184 Hs.79299 NM_005779 HPRD:17272 LHFPL2 - lipoma HMGIC fusion partner-like 2 protein-coding 13-PTNLD9-TUMOR_peak_16467 chr14 93195286 93195398 + 5.97975 NA intron (NM_001008530, intron 3 of 14) intron (NM_001008530, intron 3 of 14) 19705 NM_001008530 5641 Hs.18069 NM_005606 HPRD:04017 LGMN AEP|LGMN1|PRSC1 legumain protein-coding 13-PTNLD9-TUMOR_peak_2315 chr1 85320163 85320366 + 5.97975 NA intron (NM_012152, intron 2 of 2) intron (NM_012152, intron 2 of 2) 38632 NM_012152 23566 Hs.674915 NM_012152 HPRD:05486 LPAR3 EDG7|Edg-7|GPCR|HOFNH30|LP-A3|LPA3|RP4-678I3 lysophosphatidic acid receptor 3 protein-coding 13-PTNLD9-TUMOR_peak_40628 chr5 36875985 36876147 + 5.97975 NA promoter-TSS (NM_133433) promoter-TSS (NM_133433) 730 NR_046262 646719 Hs.355684 NR_046262 LOC646719 - uncharacterized LOC646719 ncRNA 13-PTNLD9-TUMOR_peak_6689 chr10 24404399 24404494 + 5.97975 NA intron (NM_001098500, intron 2 of 18) intron (NM_001098500, intron 2 of 18) -93274 NM_001282767 56243 Hs.445885 NM_019590 HPRD:11132 KIAA1217 SKT KIAA1217 protein-coding 13-PTNLD9-TUMOR_peak_47801 chr7 69481500 69481695 + 5.97975 NA intron (NM_001127231, intron 2 of 17) intron (NM_001127231, intron 2 of 17) 417692 NM_001127231 26053 Hs.21631 NM_015570 HPRD:06276 AUTS2 FBRSL2|MRD26 autism susceptibility candidate 2 protein-coding 13-PTNLD9-TUMOR_peak_42928 chr5 168414717 168414820 + 5.97975 NA intron (NM_003062, intron 4 of 35) intron (NM_003062, intron 4 of 35) -25464 NR_109897 728095 Hs.145601 NR_109897 ENSG00000248222 CTB-174D11.1 - uncharacterized LOC728095 ncRNA 13-PTNLD9-TUMOR_peak_33920 chr3 15149717 15149837 + 5.97975 NA Intergenic Intergenic -9122 NM_022340 64145 Hs.475565 NM_022340 HPRD:15732 ZFYVE20 Rabenosyn-5 zinc finger, FYVE domain containing 20 protein-coding 13-PTNLD9-TUMOR_peak_6785 chr10 29394529 29394776 + 5.97975 NA Intergenic Intergenic -183338 NM_032517 84569 Hs.558572 NM_032517 HPRD:14336 LYZL1 KAAG648|LYC2|PRO1278|bA534G20.1 lysozyme-like 1 protein-coding 13-PTNLD9-TUMOR_peak_10691 chr11 76432925 76433041 + 5.97975 NA promoter-TSS (NR_024042) promoter-TSS (NR_024042) -150 NR_024042 390226 Hs.440026 NR_024042 GUCY2EP GC-E|GCD|GUCY2E guanylate cyclase 2E, pseudogene pseudo 13-PTNLD9-TUMOR_peak_32302 chr21 39467491 39467588 + 5.97975 NA intron (NM_005867, intron 2 of 2) intron (NM_005867, intron 2 of 2) 25915 NM_005867 10281 Hs.23251 NM_005867 HPRD:05318 DSCR4 DCRB|DSCRB Down syndrome critical region gene 4 protein-coding 13-PTNLD9-TUMOR_peak_53543 chr9 71153251 71153407 + 5.97975 NA intron (NM_153237, intron 1 of 1) intron (NM_153237, intron 1 of 1) 2454 NM_153237 169693 Hs.663056 NM_153237 HPRD:18569 TMEM252 C9orf71 transmembrane protein 252 protein-coding 13-PTNLD9-TUMOR_peak_4169 chr1 161951693 161951787 + 5.97975 NA Intergenic MIR3|SINE|MIR 42515 NM_001297713 25903 Hs.507515 NM_015441 HPRD:14877 OLFML2B - olfactomedin-like 2B protein-coding 13-PTNLD9-TUMOR_peak_40997 chr5 59997555 59997732 + 5.97975 NA Intergenic MER50|LTR|ERV1 -1650 NM_018369 55789 Hs.482233 NM_018369 HPRD:16794 DEPDC1B BRCC3|XTP1 DEP domain containing 1B protein-coding 13-PTNLD9-TUMOR_peak_34436 chr3 46526680 46526776 + 5.97975 NA Intergenic Intergenic -12757 NM_031440 83597 Hs.196584 NM_031440 RTP3 LTM1|TMEM7|Z3CXXC3 receptor (chemosensory) transporter protein 3 protein-coding 13-PTNLD9-TUMOR_peak_13704 chr12 106871077 106871171 + 5.97975 NA intron (NM_001160708, intron 23 of 27) L1PA2|LINE|L1 -105561 NM_213594 5992 Hs.388827 NM_002920 HPRD:04905 RFX4 NYD-SP10 regulatory factor X, 4 (influences HLA class II expression) protein-coding 13-PTNLD9-TUMOR_peak_50568 chr8 32782580 32782787 + 5.97975 NA Intergenic Intergenic 203332 NM_001159996 3084 Hs.453951 NM_004495 HPRD:00802 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 13-PTNLD9-TUMOR_peak_46141 chr6 138572081 138572292 + 5.97975 NA intron (NM_020340, intron 8 of 33) intron (NM_020340, intron 8 of 33) -32559 NM_021635 59351 Hs.302016 NM_021635 HPRD:16137 PBOV1 UC28|UROC28|dJ171N11.2 prostate and breast cancer overexpressed 1 protein-coding 13-PTNLD9-TUMOR_peak_13393 chr12 79098172 79098281 + 5.97975 NA Intergenic Intergenic -159547 NM_001135805 6857 Hs.310545 NM_005639 HPRD:01710 SYT1 P65|SVP65|SYT synaptotagmin I protein-coding 13-PTNLD9-TUMOR_peak_17087 chr15 40722557 40722653 + 5.97975 NA Intergenic L2b|LINE|L2 -9315 NM_001301132 22893 Hs.22109 NM_014952 HPRD:12518 BAHD1 - bromo adjacent homology domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_37718 chr4 4490270 4490364 + 5.97975 NA intron (NM_016930, intron 1 of 10) intron (NM_016930, intron 1 of 10) 53458 NM_016930 53407 Hs.584913 NM_016930 HPRD:06923 STX18 Ufe1 syntaxin 18 protein-coding 13-PTNLD9-TUMOR_peak_40334 chr5 10885261 10885415 + 5.97975 NA Intergenic Intergenic -123951 NM_001291963 1611 Hs.75189 NM_004394 HPRD:02977 DAP - death-associated protein protein-coding 13-PTNLD9-TUMOR_peak_11105 chr11 106577214 106577341 + 5.97975 NA intron (NM_001256424, intron 8 of 8) intron (NM_001256424, intron 8 of 8) 311894 NM_000855 2977 Hs.24321 NM_000855 HPRD:03146 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1, soluble, alpha 2 protein-coding 13-PTNLD9-TUMOR_peak_21536 chr17 53536492 53536647 + 5.97975 NA Intergenic LTR1|LTR|ERV1 -37228 NM_012329 23531 Hs.463483 NM_012329 HPRD:06835 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation-associated protein-coding 13-PTNLD9-TUMOR_peak_45527 chr6 75927025 75927275 + 5.97975 NA Intergenic L3|LINE|CR1 -11527 NM_004370 1303 Hs.101302 NM_004370 HPRD:00377 COL12A1 BA209D8.1|COL12A1L|DJ234P15.1 collagen, type XII, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_15675 chr14 49877896 49878152 + 5.97975 NA Intergenic MER20|DNA|hAT-Charlie 175110 NM_001032 6235 Hs.156367 NM_001032 HPRD:04698 RPS29 DBA13|S29 ribosomal protein S29 protein-coding 13-PTNLD9-TUMOR_peak_8335 chr10 112290017 112290320 + 5.97975 NA Intergenic CpG 32543 NM_004419 1847 Hs.2128 NM_004419 HPRD:04349 DUSP5 DUSP|HVH3 dual specificity phosphatase 5 protein-coding 13-PTNLD9-TUMOR_peak_28843 chr2 159610683 159610777 + 5.97975 NA Intergenic Intergenic -41099 NM_001017920 92196 Hs.59761 NM_001017920 HPRD:18709 DAPL1 - death associated protein-like 1 protein-coding 13-PTNLD9-TUMOR_peak_56381 chrX 115403602 115403841 + 5.97975 NA Intergenic L2c|LINE|L2 101763 NM_000686 186 Hs.405348 NM_000686 HPRD:02071 AGTR2 AT2|ATGR2|MRX88 angiotensin II receptor, type 2 protein-coding 13-PTNLD9-TUMOR_peak_46009 chr6 125513563 125513671 + 5.97975 NA intron (NM_001292026, intron 1 of 4) intron (NM_001292026, intron 1 of 4) 38197 NM_001003395 7164 Hs.591347 NM_003287 HPRD:07236 TPD52L1 D53|hD53 tumor protein D52-like 1 protein-coding 13-PTNLD9-TUMOR_peak_37228 chr3 190812012 190812106 + 5.97975 NA Intergenic Intergenic -118263 NM_198184 344901 Hs.526794 NM_198184 HPRD:17809 OSTN MUSCLIN osteocrin protein-coding 13-PTNLD9-TUMOR_peak_17044 chr15 38823837 38823933 + 5.97975 NA intron (NM_005739, intron 2 of 16) intron (NM_005739, intron 2 of 16) 33122 NM_005739 10125 Hs.591127 NM_005739 HPRD:04909 RASGRP1 CALDAG-GEFI|CALDAG-GEFII|RASGRP|V|hRasGRP1 RAS guanyl releasing protein 1 (calcium and DAG-regulated) protein-coding 13-PTNLD9-TUMOR_peak_18249 chr16 2426520 2426650 + 5.97975 NA intron (NR_003574, intron 6 of 16) intron (NR_003574, intron 6 of 16) 35662 NR_003574 650655 Hs.376281 NR_003574 ENSG00000238098 ABCA17P ABCA17 ATP-binding cassette, sub-family A (ABC1), member 17, pseudogene pseudo 13-PTNLD9-TUMOR_peak_46114 chr6 136915153 136915354 + 5.97975 NA intron (NM_005923, intron 21 of 29) intron (NM_005923, intron 21 of 29) -43296 NM_003980 9053 Hs.486548 NM_003980 HPRD:04982 MAP7 E-MAP-115|EMAP115 microtubule-associated protein 7 protein-coding 13-PTNLD9-TUMOR_peak_39486 chr4 142228463 142228724 + 5.97975 NA Intergenic Intergenic 25178 NR_121625 100507639 Hs.535010 NR_121625 ENSG00000248810 LOC100507639 - uncharacterized LOC100507639 ncRNA 13-PTNLD9-TUMOR_peak_13988 chr12 118424521 118424625 + 5.97975 NA Intergenic MER113|DNA|hAT-Charlie -18545 NM_173598 283455 Hs.375836 NM_173598 HPRD:13952 KSR2 - kinase suppressor of ras 2 protein-coding 13-PTNLD9-TUMOR_peak_29311 chr2 187506638 187506737 + 5.97975 NA intron (NM_001145000, intron 10 of 27) intron (NM_001145000, intron 10 of 27) 41755 NM_001144999 3685 Hs.436873 NM_002210 HPRD:01903 ITGAV CD51|MSK8|VNRA|VTNR integrin, alpha V protein-coding 13-PTNLD9-TUMOR_peak_25864 chr1_gl000191_random 1229 1369 + 5.97975 NA Intergenic Intergenic 48982 NM_006625 10772 Hs.3530 NM_006625 HPRD:05562 SRSF10 FUSIP1|FUSIP2|NSSR|PPP1R149|SFRS13|SFRS13A|SRp38|SRrp40|TASR|TASR1|TASR2 serine/arginine-rich splicing factor 10 protein-coding 13-PTNLD9-TUMOR_peak_37602 chr4 1901085 1901179 + 5.97975 NA intron (NM_133331, intron 2 of 22) MER20|DNA|hAT-Charlie -1221 NM_133334 7468 Hs.113876 NM_007331 HPRD:04259 WHSC1 MMSET|NSD2|REIIBP|TRX5|WHS Wolf-Hirschhorn syndrome candidate 1 protein-coding 13-PTNLD9-TUMOR_peak_20875 chr17 33581439 33581625 + 5.97975 NA intron (NM_144975, intron 1 of 4) intron (NM_144975, intron 1 of 4) 11446 NM_144975 162394 Hs.709347 NM_144975 SLFN5 - schlafen family member 5 protein-coding 13-PTNLD9-TUMOR_peak_55679 chrX 29680891 29681041 + 5.97975 NA intron (NM_014271, intron 5 of 10) intron (NM_014271, intron 5 of 10) -552709 NM_002364 4113 Hs.113824 NM_002364 HPRD:02109 MAGEB2 CT3.2|DAM6|MAGE-XP-2 melanoma antigen family B, 2 protein-coding 13-PTNLD9-TUMOR_peak_32826 chr22 21428584 21428687 + 5.97975 NA Intergenic Intergenic 28386 NR_110991 400891 Hs.291198 NM_001013675 HPRD:18419 LRRC74B - leucine rich repeat containing 74B protein-coding 13-PTNLD9-TUMOR_peak_13372 chr12 75947385 75947484 + 5.97975 NA Intergenic MIRc|SINE|MIR -42016 NM_007043 11103 Hs.645517 NM_007043 HPRD:11027 KRR1 HRB2|RIP-1 KRR1, small subunit (SSU) processome component, homolog (yeast) protein-coding 13-PTNLD9-TUMOR_peak_44930 chr6 39653167 39653298 + 5.97975 NA intron (NM_001289020, intron 3 of 21) L2a|LINE|L2 39949 NM_001289021 221458 Hs.588202 NM_145027 HPRD:10786 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 13-PTNLD9-TUMOR_peak_34665 chr3 52704845 52705108 + 5.97975 NA intron (NM_018313, intron 3 of 29) MLT1J|LTR|ERVL-MaLR 14890 NM_018313 55193 Hs.189920 NM_018165 ENSG00000163939 PBRM1 BAF180|PB1 polybromo 1 protein-coding 13-PTNLD9-TUMOR_peak_33431 chr22 46067953 46068152 + 5.97975 NA exon (NM_001167621, exon 1 of 11) exon (NM_001167621, exon 1 of 11) 374 NM_013236 25814 Hs.475125 NM_013236 HPRD:04624 ATXN10 E46L|HUMEEP|SCA10 ataxin 10 protein-coding 13-PTNLD9-TUMOR_peak_40398 chr5 15249410 15249504 + 5.97975 NA intron (NR_109944, intron 1 of 2) L1MEe|LINE|L1 17212 NR_109944 101929454 Hs.453273 NR_109944 LOC101929454 - uncharacterized LOC101929454 ncRNA 13-PTNLD9-TUMOR_peak_18635 chr16 16275669 16275768 + 5.97975 NA intron (NM_001171, intron 17 of 30) AluSx|SINE|Alu 41610 NM_001171 368 Hs.442182 NM_001171 HPRD:04453 ABCC6 ABC34|ARA|EST349056|GACI2|MLP1|MOAT-E|MOATE|MRP6|PXE|PXE1|URG7 ATP-binding cassette, sub-family C (CFTR/MRP), member 6 protein-coding 13-PTNLD9-TUMOR_peak_46026 chr6 126226149 126226265 + 5.97975 NA intron (NM_001122842, intron 10 of 15) intron (NM_001122842, intron 10 of 15) -14163 NM_001199622 135112 Hs.171426 NM_181782 HPRD:14814 NCOA7 ERAP140|ESNA1|NCOA7-AS|Nbla00052|Nbla10993|TLDC4|dJ187J11.3 nuclear receptor coactivator 7 protein-coding 13-PTNLD9-TUMOR_peak_54474 chr9 115630072 115630264 + 5.97975 NA intron (NM_001012994, intron 8 of 8) intron (NM_001012994, intron 8 of 8) 23025 NM_033051 57864 Hs.512668 NM_033051 HPRD:16411 SLC46A2 Ly110|TSCOT solute carrier family 46, member 2 protein-coding 13-PTNLD9-TUMOR_peak_51641 chr8 116068639 116068733 + 5.97975 NA Intergenic Intergenic 611553 NM_001282902 7227 Hs.657018 NM_014112 HPRD:05091 TRPS1 GC79|LGCR trichorhinophalangeal syndrome I protein-coding 13-PTNLD9-TUMOR_peak_55689 chrX 31438846 31438969 + 5.97975 NA intron (NM_004022, intron 17 of 33) intron (NM_004022, intron 17 of 33) 87508 NM_004014 1756 Hs.495912 NM_000109 HPRD:02303 DMD BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272|MRX85 dystrophin protein-coding 13-PTNLD9-TUMOR_peak_27901 chr2 104051593 104051719 + 5.97975 NA Intergenic Intergenic 673166 NM_144632 130827 Hs.436203 NM_144632 HPRD:08698 TMEM182 - transmembrane protein 182 protein-coding 13-PTNLD9-TUMOR_peak_30105 chr2 237654568 237654672 + 5.97975 NA Intergenic Intergenic 176240 NM_020311 57007 Hs.471751 NM_020311 HPRD:09882 ACKR3 CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1 atypical chemokine receptor 3 protein-coding 13-PTNLD9-TUMOR_peak_26671 chr2 40630665 40630901 + 5.97975 NA intron (NM_001112800, intron 1 of 8) intron (NM_001112800, intron 1 of 8) 26661 NM_001112801 6546 Hs.31961 NM_021097 HPRD:01659 SLC8A1 NCX1 solute carrier family 8 (sodium/calcium exchanger), member 1 protein-coding 13-PTNLD9-TUMOR_peak_17949 chr15 89974077 89974171 + 5.97975 NA Intergenic CpG 52851 NR_015411 254559 Hs.136313 NR_015411 LINC00925 - long intergenic non-protein coding RNA 925 ncRNA 13-PTNLD9-TUMOR_peak_44374 chr6 28641677 28641862 + 5.97975 NA Intergenic Intergenic -86657 NM_052923 114821 Hs.176980 NM_052923 HPRD:11720 ZBED9 Buster4|SCAND3|ZFP38-L|ZNF305P2|ZNF452|dJ1186N24.3 zinc finger, BED-type containing 9 protein-coding 13-PTNLD9-TUMOR_peak_8183 chr10 102855481 102855575 + 5.97975 NA intron (NM_001085398, intron 2 of 2) intron (NM_001085398, intron 2 of 2) 34529 NM_030929 81621 Hs.534859 NM_030929 KAZALD1 BONO1|FKSG28|FKSG40|IGFBP-rP10 Kazal-type serine peptidase inhibitor domain 1 protein-coding 13-PTNLD9-TUMOR_peak_38434 chr4 55405847 55405961 + 5.97975 NA Intergenic Intergenic -118191 NM_000222 3815 Hs.479754 NM_000222 HPRD:01287 KIT C-Kit|CD117|PBT|SCFR v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog protein-coding 13-PTNLD9-TUMOR_peak_11512 chr11 124633188 124633479 + 5.97975 NA intron (NR_120579, intron 1 of 1) intron (NR_120579, intron 1 of 1) 1006 NR_120579 101929340 Hs.173840 NR_120577 LOC101929340 - uncharacterized LOC101929340 ncRNA 13-PTNLD9-TUMOR_peak_23936 chr19 10514475 10514574 + 5.97975 NA promoter-TSS (NM_007065) promoter-TSS (NM_007065) -253 NM_007065 11140 Hs.160958 NM_007065 HPRD:05456 CDC37 P50CDC37 cell division cycle 37 protein-coding 13-PTNLD9-TUMOR_peak_21764 chr17 62379753 62379847 + 5.97975 NA Intergenic Intergenic 27283 NM_000442 5175 Hs.376675 NM_000442 PECAM1 CD31|CD31/EndoCAM|GPIIA'|PECA1|PECAM-1|endoCAM platelet/endothelial cell adhesion molecule 1 protein-coding 13-PTNLD9-TUMOR_peak_56754 chrX 154445107 154445284 + 5.97949 NA intron (NM_003372, intron 1 of 5) intron (NM_003372, intron 1 of 5) 494 NM_003372 7411 Hs.436803 NM_003372 HPRD:02135 VBP1 PFD3|PFDN3|VBP-1 von Hippel-Lindau binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_35366 chr3 112012326 112012657 + 5.97949 NA intron (NM_183061, intron 1 of 28) intron (NM_183061, intron 1 of 28) 583 NM_183061 285335 Hs.680112 NM_183061 HPRD:11257 SLC9C1 NHE|SLC9A10|sperm-NHE solute carrier family 9, subfamily C (Na+-transporting carboxylic acid decarboxylase), member 1 protein-coding 13-PTNLD9-TUMOR_peak_54746 chr9 126692266 126692520 + 5.97949 NA promoter-TSS (NM_024820) promoter-TSS (NM_024820) 24 NM_020946 57706 Hs.744995 NM_020946 HPRD:17221 DENND1A FAM31A|KIAA1608 DENN/MADD domain containing 1A protein-coding 13-PTNLD9-TUMOR_peak_4827 chr1 192717256 192717373 + 5.97949 NA Intergenic Intergenic -60855 NM_002923 5997 Hs.78944 NM_002923 HPRD:02917 RGS2 G0S8 regulator of G-protein signaling 2 protein-coding 13-PTNLD9-TUMOR_peak_23764 chr19 6057347 6057581 + 5.97949 NA intron (NM_000635, intron 1 of 17) MIRc|SINE|MIR 53200 NM_000635 5990 Hs.465709 NM_000635 HPRD:00824 RFX2 - regulatory factor X, 2 (influences HLA class II expression) protein-coding 13-PTNLD9-TUMOR_peak_14927 chr13 85697418 85697528 + 5.97949 NA Intergenic L1PA2|LINE|L1 -240265 NR_046989 100874137 Hs.742643 NR_046989 ENSG00000226317 LINC00351 - long intergenic non-protein coding RNA 351 ncRNA 13-PTNLD9-TUMOR_peak_55494 chrX 3615871 3616112 + 5.97949 NA intron (NM_005044, intron 1 of 8) intron (NM_005044, intron 1 of 8) 15684 NM_005044 5613 Hs.390788 NM_005044 HPRD:02097 PRKX PKX1 protein kinase, X-linked protein-coding 13-PTNLD9-TUMOR_peak_21133 chr17 41656266 41656374 + 5.97949 NA Intergenic Intergenic -32520 NM_001079675 2118 Hs.434059 NM_001986 HPRD:02833 ETV4 E1A-F|E1AF|PEA3|PEAS3 ets variant 4 protein-coding 13-PTNLD9-TUMOR_peak_44770 chr6 35359954 35360221 + 5.97949 NA intron (NM_001171819, intron 2 of 6) intron (NM_001171819, intron 2 of 6) 49752 NM_177435 5467 Hs.696032 NM_006238 HPRD:02679 PPARD FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB peroxisome proliferator-activated receptor delta protein-coding 13-PTNLD9-TUMOR_peak_37665 chr4 3493739 3493882 + 5.97949 NA intron (NM_001301071, intron 6 of 9) intron (NM_001301071, intron 6 of 9) 7539 NM_001256896 285489 Hs.122110 NM_173660 HPRD:08744 DOK7 C4orf25|CMS1B docking protein 7 protein-coding 13-PTNLD9-TUMOR_peak_12548 chr12 38532448 38532634 + 5.97238 NA Intergenic CpG -178016 NM_001013620 144245 Hs.259305 NM_001013620 ALG10B ALG10|KCR1 ALG10B, alpha-1,2-glucosyltransferase protein-coding 13-PTNLD9-TUMOR_peak_46809 chr7 5948245 5948376 + 5.97238 NA intron (NM_015622, intron 7 of 14) AluSx|SINE|Alu 9969 NM_015622 51622 Hs.530000 NM_015622 HPRD:12915 CCZ1 C7orf28A|CCZ1A|H_DJ1163J12.2 CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_39152 chr4 118955506 118955600 + 5.97238 NA promoter-TSS (NM_004784) promoter-TSS (NM_004784) 53 NM_004784 9348 Hs.480596 NM_004784 ENSG00000164100 NDST3 HSST3 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3 protein-coding 13-PTNLD9-TUMOR_peak_42823 chr5 158877065 158877282 + 5.97238 NA intron (NR_027110, intron 6 of 6) intron (NR_027110, intron 6 of 6) 16111 NR_027110 285627 Hs.552766 NR_027110 ENSG00000253298 LOC285627 - uncharacterized LOC285627 ncRNA 13-PTNLD9-TUMOR_peak_26372 chr2 26919302 26919413 + 5.97238 NA intron (NM_002246, intron 1 of 1) intron (NM_002246, intron 1 of 1) 3776 NM_002246 3777 Hs.645288 NM_002246 KCNK3 K2p3.1|OAT1|PPH4|TASK|TASK-1|TBAK1 potassium channel, subfamily K, member 3 protein-coding 13-PTNLD9-TUMOR_peak_52892 chr9 21559681 21560066 + 5.97238 NA promoter-TSS (NR_027054) promoter-TSS (NR_027054) -176 NR_027054 554202 Hs.458096 NR_027054 MIR31HG - MIR31 host gene (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_6524 chr10 13602646 13602799 + 5.97238 NA Intergenic Intergenic -26217 NM_003675 8559 Hs.729158 NM_003675 HPRD:05407 PRPF18 PRP18|hPrp18 pre-mRNA processing factor 18 protein-coding 13-PTNLD9-TUMOR_peak_27722 chr2 97074878 97075003 + 5.97238 NA Intergenic AluJb|SINE|Alu 73461 NM_015341 23397 Hs.308045 NM_015341 HPRD:03820 NCAPH BRRN1|CAP-H non-SMC condensin I complex, subunit H protein-coding 13-PTNLD9-TUMOR_peak_33657 chr3 8766182 8766281 + 5.97238 NA Intergenic Intergenic -9255 NM_033337 859 Hs.98303 NM_001234 HPRD:03154 CAV3 LGMD1C|LQT9|VIP-21|VIP21 caveolin 3 protein-coding 13-PTNLD9-TUMOR_peak_11723 chr11 133870558 133870695 + 5.97238 NA Intergenic Intergenic -31541 NR_027276 100128239 Hs.423734 NR_027276 ENSG00000204241 LOC100128239 - uncharacterized LOC100128239 ncRNA 13-PTNLD9-TUMOR_peak_8510 chr10 124098539 124098737 + 5.97238 NA TTS (NM_144587) TTS (NM_144587) -35456 NM_001001974 59338 Hs.643512 NM_021622 HPRD:09686 PLEKHA1 TAPP1 pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1 protein-coding 13-PTNLD9-TUMOR_peak_21299 chr17 45335388 45335486 + 5.97238 NA intron (NM_000212, intron 1 of 14) intron (NM_000212, intron 1 of 14) 4229 NM_000212 3690 Hs.218040 NM_000212 HPRD:01428 ITGB3 BDPLT16|BDPLT2|CD61|GP3A|GPIIIa|GT integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61) protein-coding 13-PTNLD9-TUMOR_peak_3077 chr1 120229439 120229564 + 5.97238 NA Intergenic Intergenic -24918 NM_006623 26227 Hs.487296 NM_006623 HPRD:06047 PHGDH 3-PGDH|3PGDH|HEL-S-113|NLS|PDG|PGAD|PGD|PGDH|PHGDHD|SERA phosphoglycerate dehydrogenase protein-coding 13-PTNLD9-TUMOR_peak_20982 chr17 37856138 37856260 + 5.97238 NA promoter-TSS (NM_004448) promoter-TSS (NM_004448) -32 NM_001289937 2064 Hs.446352 NM_004448 HPRD:01281 ERBB2 CD340|HER-2|HER-2/neu|HER2|MLN 19|NEU|NGL|TKR1 v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 2 protein-coding 13-PTNLD9-TUMOR_peak_17127 chr15 42258434 42258528 + 5.97238 NA intron (NM_139265, intron 1 of 5) L2b|LINE|L2 6274 NM_139265 30844 Hs.143703 NM_139265 HPRD:10435 EHD4 PAST4 EH-domain containing 4 protein-coding 13-PTNLD9-TUMOR_peak_16850 chr15 27570187 27570281 + 5.97238 NA intron (NM_033223, intron 3 of 9) intron (NM_033223, intron 3 of 9) -163768 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 LOC101928869 - uncharacterized LOC101928869 ncRNA 13-PTNLD9-TUMOR_peak_10041 chr11 61849654 61849758 + 5.97238 NA Intergenic Intergenic -41739 NM_001040694 3619 Hs.142179 NM_020238 HPRD:05103 INCENP - inner centromere protein antigens 135/155kDa protein-coding 13-PTNLD9-TUMOR_peak_33302 chr22 39972481 39972636 + 5.97238 NA intron (NM_001003406, intron 1 of 35) intron (NM_001003406, intron 1 of 35) 5800 NM_001003406 8911 Hs.125116 NM_021096 HPRD:10500 CACNA1I Cav3.3|ca(v)3.3 calcium channel, voltage-dependent, T type, alpha 1I subunit protein-coding 13-PTNLD9-TUMOR_peak_7328 chr10 50264555 50264650 + 5.97238 NA intron (NM_001031746, intron 5 of 7) intron (NM_001031746, intron 5 of 7) 58975 NM_144984 196740 Hs.522928 NM_144984 HPRD:08503 VSTM4 C10orf72 V-set and transmembrane domain containing 4 protein-coding 13-PTNLD9-TUMOR_peak_2955 chr1 115727521 115727780 + 5.97238 NA Intergenic Intergenic -95529 NM_005725 10100 Hs.310458 NM_005725 HPRD:18233 TSPAN2 NET3|TSN2|TSPAN-2 tetraspanin 2 protein-coding 13-PTNLD9-TUMOR_peak_51503 chr8 104082335 104082441 + 5.97238 NA 3' UTR (NM_001695, exon 13 of 13) 3' UTR (NM_001695, exon 13 of 13) 49140 NM_001695 528 Hs.86905 NM_001695 HPRD:04371 ATP6V1C1 ATP6C|ATP6D|VATC|Vma5 ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1 protein-coding 13-PTNLD9-TUMOR_peak_1814 chr1 53847539 53847668 + 5.97238 NA Intergenic MIRb|SINE|MIR -53782 NM_001018054 7804 Hs.280387 NM_004631 LRP8 APOER2|HSZ75190|LRP-8|MCI1 low density lipoprotein receptor-related protein 8, apolipoprotein e receptor protein-coding 13-PTNLD9-TUMOR_peak_54221 chr9 102207971 102208070 + 5.97238 NA Intergenic Intergenic -70481 NR_102270 100996569 Hs.745280 NR_102270 ENSG00000271086 NAMA - non-protein coding RNA, associated with MAP kinase pathway and growth arrest ncRNA 13-PTNLD9-TUMOR_peak_46589 chr6 170445128 170445254 + 5.97238 NA Intergenic Intergenic 126466 NR_002787 154449 Hs.447751 NR_002787 ENSG00000230960 LOC154449 - uncharacterized LOC154449 ncRNA 13-PTNLD9-TUMOR_peak_43791 chr6 11686067 11686230 + 5.97238 NA Intergenic ERVL-E-int|LTR|ERVL 93132 NM_001143948 84830 Hs.126409 NM_032744 HPRD:12836 ADTRP AIG1L|C6orf105|dJ413H6.1 androgen-dependent TFPI-regulating protein protein-coding 13-PTNLD9-TUMOR_peak_4405 chr1 172368612 172368720 + 5.97238 NA intron (NM_001136127, intron 19 of 19) intron (NM_001136127, intron 19 of 19) -21162 NM_139240 92346 Hs.517991 NM_139240 HPRD:14291 C1orf105 - chromosome 1 open reading frame 105 protein-coding 13-PTNLD9-TUMOR_peak_1758 chr1 51746299 51746431 + 5.97238 NA Intergenic AluJb|SINE|Alu 17268 NM_001297667 22996 Hs.112949 NM_001080494 ENSG00000085831 TTC39A C1orf34|DEME-6 tetratricopeptide repeat domain 39A protein-coding 13-PTNLD9-TUMOR_peak_55001 chr9 137305811 137305905 + 5.97238 NA intron (NM_001291921, intron 3 of 8) intron (NM_001291921, intron 3 of 8) 7430 NM_001291921 6256 Hs.590886 NM_002957 RXRA NR2B1 retinoid X receptor, alpha protein-coding 13-PTNLD9-TUMOR_peak_55652 chrX 23925690 23925881 + 5.97238 NA promoter-TSS (NM_001169574) promoter-TSS (NM_001169574) 272 NR_026545 79135 Hs.495851 NM_024122 HPRD:06657 APOO FAM121B apolipoprotein O protein-coding 13-PTNLD9-TUMOR_peak_44004 chr6 18147514 18147618 + 5.97238 NA intron (NM_000367, intron 3 of 8) intron (NM_000367, intron 3 of 8) 7830 NM_000367 7172 Hs.444319 NM_000367 HPRD:01760 TPMT - thiopurine S-methyltransferase protein-coding 13-PTNLD9-TUMOR_peak_56313 chrX 106449714 106449858 + 5.97238 NA promoter-TSS (NM_173494) promoter-TSS (NM_173494) -76 NM_001169154 139212 Hs.128836 NM_173494 HPRD:06650 PIH1D3 CXorf41|NYSAR97 PIH1 domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_18083 chr15 100503811 100504013 + 5.97238 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -156780 NR_003260 196968 Hs.567763 NM_194295 HPRD:13192 DNM1P46 C15orf51|DNM1DN14.2|DNM1DN14@ DNM1 pseudogene 46 pseudo 13-PTNLD9-TUMOR_peak_21756 chr17 62103213 62103386 + 5.97238 NA Intergenic Intergenic -5305 NM_001099787 3384 Hs.431460 NM_000873 HPRD:00888 ICAM2 CD102 intercellular adhesion molecule 2 protein-coding 13-PTNLD9-TUMOR_peak_916 chr1 31091422 31091523 + 5.97194 NA Intergenic MIRb|SINE|MIR -100147 NR_034182 100129196 Hs.659751 NR_034182 ENSG00000186056 MATN1-AS1 - MATN1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_11700 chr11 131500929 131501023 + 5.97194 NA intron (NM_001048209, intron 1 of 7) MIRb|SINE|MIR -90215 NR_110140 101929653 Hs.559159 NR_110140 ENSG00000237654 LOC101929653 - uncharacterized LOC101929653 ncRNA 13-PTNLD9-TUMOR_peak_47426 chr7 47401330 47401513 + 5.97194 NA intron (NM_022748, intron 17 of 30) intron (NM_022748, intron 17 of 30) 220321 NM_022748 64759 Hs.520814 NM_022748 ENSG00000136205 TNS3 TEM6|TENS1 tensin 3 protein-coding 13-PTNLD9-TUMOR_peak_53699 chr9 79442363 79442466 + 5.97194 NA intron (NM_015225, intron 4 of 18) intron (NM_015225, intron 4 of 18) 63060 NR_015342 50652 Hs.663766 NR_015342 ENSG00000225937 PCA3 DD3|NCRNA00019|PCAT3 prostate cancer associated 3 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_4708 chr1 183386063 183386172 + 5.97194 NA intron (NM_015039, intron 1 of 10) CpG 1517 NM_015039 23057 Hs.497123 NM_015039 HPRD:09786 NMNAT2 C1orf15|PNAT2 nicotinamide nucleotide adenylyltransferase 2 protein-coding 13-PTNLD9-TUMOR_peak_29980 chr2 230918919 230919084 + 5.97194 NA intron (NM_152527, intron 2 of 4) MER4C|LTR|ERV1 14714 NM_152527 151473 Hs.504317 NM_152527 HPRD:15347 SLC16A14 MCT14 solute carrier family 16, member 14 protein-coding 13-PTNLD9-TUMOR_peak_43801 chr6 11910231 11910373 + 5.97194 NA Intergenic MER5B|DNA|hAT-Charlie -102422 NM_002114 3096 Hs.567284 NM_002114 HPRD:01925 HIVEP1 CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A human immunodeficiency virus type I enhancer binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_42422 chr5 141825792 141825991 + 5.97194 NA intron (NR_120664, intron 3 of 3) intron (NR_120664, intron 3 of 3) 121033 NR_120664 101926941 Hs.658945 NR_120664 ENSG00000231185 LOC101926941 - uncharacterized LOC101926941 ncRNA 13-PTNLD9-TUMOR_peak_17530 chr15 69384646 69384828 + 5.97194 NA intron (NR_026949, intron 3 of 3) L1ME3A|LINE|L1 11547 NR_026949 283673 Hs.177927 NM_173610 HPRD:08746 LINC00277 NCRNA00277|TMEM84 long intergenic non-protein coding RNA 277 ncRNA 13-PTNLD9-TUMOR_peak_53649 chr9 76060491 76060651 + 5.97194 NA Intergenic LTR19A|LTR|ERV1 293790 NM_000700 301 Hs.494173 NM_000700 HPRD:01060 ANXA1 ANX1|LPC1 annexin A1 protein-coding 13-PTNLD9-TUMOR_peak_34544 chr3 49486679 49486777 + 5.97194 NA Intergenic Intergenic -19408 NM_001177643 1605 Hs.76111 NM_004393 HPRD:00546 DAG1 156DAG|A3a|AGRNR|DAG|MDDGC7|MDDGC9 dystroglycan 1 (dystrophin-associated glycoprotein 1) protein-coding 13-PTNLD9-TUMOR_peak_9681 chr11 45986564 45986660 + 5.97194 NA intron (NM_001101802, intron 9 of 17) intron (NM_001101802, intron 9 of 17) 42385 NM_001300721 120071 Hs.86543 NM_152312 HPRD:13618 GYLTL1B LARGE2 glycosyltransferase-like 1B protein-coding 13-PTNLD9-TUMOR_peak_56133 chrX 71458846 71459023 + 5.97194 NA promoter-TSS (NM_017669) promoter-TSS (NM_017669) -76 NM_017669 54821 Hs.47558 NM_017669 HPRD:10974 ERCC6L PICH|RAD26L excision repair cross-complementation group 6-like protein-coding 13-PTNLD9-TUMOR_peak_8814 chr11 2347140 2347234 + 5.97194 NA Intergenic ERVL-B4-int|LTR|ERVL 23944 NM_139022 10077 Hs.271954 NM_005705 HPRD:04834 TSPAN32 ART1|PHEMX|PHMX|TSSC6 tetraspanin 32 protein-coding 13-PTNLD9-TUMOR_peak_11559 chr11 126455798 126456075 + 5.97194 NA intron (NM_001301097, intron 1 of 15) AmnSINE1|SINE|Deu -66737 NR_120532 101929427 Hs.600341 NR_120532 ENSG00000254607 LOC101929427 - uncharacterized LOC101929427 ncRNA 13-PTNLD9-TUMOR_peak_14665 chr13 42614180 42614277 + 5.97194 NA promoter-TSS (NM_001204504) promoter-TSS (NM_001204504) 56 NM_001204504 160851 Hs.630380 NM_152910 HPRD:07237 DGKH DGKeta diacylglycerol kinase, eta protein-coding 13-PTNLD9-TUMOR_peak_9474 chr11 33829924 33830018 + 5.97194 NA Intergenic Intergenic 33726 NR_120550 101928440 Hs.202343 NR_120550 ENSG00000254508 FBXO3-AS1 - FBXO3 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_38952 chr4 100685106 100685224 + 5.97194 NA Intergenic Intergenic -52816 NM_014395 27071 Hs.436271 NM_014395 HPRD:05773 DAPP1 BAM32 dual adaptor of phosphotyrosine and 3-phosphoinositides protein-coding 13-PTNLD9-TUMOR_peak_3572 chr1 150598823 150598931 + 5.96839 NA TTS (NM_207168) TTS (NM_207168) 2732 NM_207045 2029 Hs.632456 NM_004436 HPRD:11927 ENSA ARPP-19e endosulfine alpha protein-coding 13-PTNLD9-TUMOR_peak_11193 chr11 111603895 111604048 + 5.96627 NA intron (NM_181699, intron 15 of 15) intron (NM_181699, intron 15 of 15) 33198 NM_001177562 5519 Hs.269128 NM_002716 HPRD:04384 PPP2R1B PP2A-Abeta|PR65B protein phosphatase 2, regulatory subunit A, beta protein-coding 13-PTNLD9-TUMOR_peak_25631 chr19 54617959 54618053 + 5.96627 NA promoter-TSS (NM_015629) promoter-TSS (NM_015629) -784 NM_015629 26121 Hs.515598 NM_015629 HPRD:05917 PRPF31 NY-BR-99|PRP31|RP11|SNRNP61 pre-mRNA processing factor 31 protein-coding 13-PTNLD9-TUMOR_peak_13769 chr12 109250224 109250422 + 5.96605 NA intron (NM_001161330, intron 1 of 13) intron (NM_001161330, intron 1 of 13) 1036 NM_001161330 54434 Hs.199763 NM_018984 HPRD:09486 SSH1 SSH1L slingshot protein phosphatase 1 protein-coding 13-PTNLD9-TUMOR_peak_3773 chr1 154298814 154299045 + 5.96511 NA intron (NM_001005855, intron 1 of 11) intron (NM_001005855, intron 1 of 11) 893 NM_001005855 57198 Hs.435700 NM_020452 HPRD:05794 ATP8B2 ATPID ATPase, aminophospholipid transporter, class I, type 8B, member 2 protein-coding 13-PTNLD9-TUMOR_peak_31586 chr20 52558712 52559003 + 5.96511 NA Intergenic Intergenic -66609 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_38720 chr4 82570184 82570296 + 5.96511 NA Intergenic Intergenic -177158 NM_001300736 153020 Hs.591696 NM_152545 HPRD:17955 RASGEF1B GPIG4 RasGEF domain family, member 1B protein-coding 13-PTNLD9-TUMOR_peak_27871 chr2 102603524 102603687 + 5.95978 NA Intergenic AluJr4|SINE|Alu 3678 NR_103791 100506328 Hs.516245 NR_103791 LINC01127 - long intergenic non-protein coding RNA 1127 ncRNA 13-PTNLD9-TUMOR_peak_7764 chr10 75648939 75649067 + 5.95974 NA Intergenic Intergenic -14654 NM_172169 818 Hs.523045 NM_001222 HPRD:03672 CAMK2G CAMK|CAMK-II|CAMKG calcium/calmodulin-dependent protein kinase II gamma protein-coding 13-PTNLD9-TUMOR_peak_6450 chr10 10834735 10834933 + 5.95974 NA intron (NR_027082, intron 1 of 3) intron (NR_027082, intron 1 of 3) 2043 NR_027082 207107 Hs.31562 NR_027082 ENSG00000225383 SFTA1P SFTPF surfactant associated 1, pseudogene pseudo 13-PTNLD9-TUMOR_peak_42834 chr5 159276702 159276822 + 5.95974 NA intron (NR_109891, intron 2 of 2) intron (NR_109891, intron 2 of 2) 21629 NR_109891 101927766 Hs.638568 NR_109891 ENSG00000253311 LOC101927766 - uncharacterized LOC101927766 ncRNA 13-PTNLD9-TUMOR_peak_20082 chr16 88700066 88700322 + 5.95974 NA Intergenic Intergenic -4807 NM_013278 27189 Hs.278911 NM_013278 HPRD:06863 IL17C CX2|IL-17C interleukin 17C protein-coding 13-PTNLD9-TUMOR_peak_49839 chr7 157346774 157347000 + 5.95974 NA intron (NM_130842, intron 20 of 21) CpG 20227 NR_029689 406945 NR_029689 MIR153-2 MIRN153-2 microRNA 153-2 ncRNA 13-PTNLD9-TUMOR_peak_23724 chr19 4455785 4455941 + 5.95974 NA promoter-TSS (NM_001171091) promoter-TSS (NM_001171091) -568 NM_001171091 80700 Hs.435255 NM_025241 HPRD:18253 UBXN6 UBXD1|UBXDC2 UBX domain protein 6 protein-coding 13-PTNLD9-TUMOR_peak_45687 chr6 89068661 89068820 + 5.95974 NA Intergenic Intergenic 180348 NR_110867 101928936 Hs.533080 NR_110867 LOC101928936 - uncharacterized LOC101928936 ncRNA 13-PTNLD9-TUMOR_peak_52576 chr9 169872 170112 + 5.95974 NA intron (NM_001145355, intron 5 of 15) AluJo|SINE|Alu 9083 NM_001145355 55871 Hs.531330 NM_018491 HPRD:16686 CBWD1 COBP COBW domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_35596 chr3 123397011 123397275 + 5.95974 NA intron (NM_053025, intron 20 of 33) intron (NM_053025, intron 20 of 33) -11348 NR_046629 100873940 Hs.667316 NR_046629 MYLK-AS2 - MYLK antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_42888 chr5 162888618 162888775 + 5.95974 NA intron (NM_001142557, intron 1 of 14) AluYc|SINE|Alu 1179 NM_001142557 3161 Hs.740467 NM_012484 HPRD:02963 HMMR CD168|IHABP|RHAMM hyaluronan-mediated motility receptor (RHAMM) protein-coding 13-PTNLD9-TUMOR_peak_19562 chr16 67184841 67184940 + 5.95974 NA promoter-TSS (NM_033309) promoter-TSS (NM_033309) 12 NM_033309 84752 Hs.744158 NM_033309 HPRD:14651 B3GNT9 - UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9 protein-coding 13-PTNLD9-TUMOR_peak_6940 chr10 35621231 35621329 + 5.94913 NA intron (NM_181698, intron 3 of 11) intron (NM_181698, intron 3 of 11) -4522 NM_145012 219771 Hs.14745 NM_145012 HPRD:10700 CCNY C10orf9|CBCP1|CCNX|CFP1 cyclin Y protein-coding 13-PTNLD9-TUMOR_peak_31939 chr21 14995588 14995692 + 5.94913 NA intron (NM_174981, intron 6 of 10) MER1A|DNA|hAT-Charlie 13142 NM_174981 317754 Hs.742365 NM_174981 HPRD:09612 POTED A26B3|ANKRD21|CT104.1|POTE|POTE-21|POTE21 POTE ankyrin domain family, member D protein-coding 13-PTNLD9-TUMOR_peak_44599 chr6 32050778 32050965 + 5.94913 NA intron (NM_019105, intron 8 of 43) L2b|LINE|L2 26280 NM_019105 7148 Hs.485104 NM_019105 HPRD:02993 TNXB EDS3|HXBL|TENX|TN-X|TNX|TNXB1|TNXB2|TNXBS|XB|XBS tenascin XB protein-coding 13-PTNLD9-TUMOR_peak_4471 chr1 175101691 175101803 + 5.94913 NA intron (NM_022093, intron 15 of 18) MIRc|SINE|MIR 60202 NM_001162895 9674 Hs.518138 NM_014656 HPRD:13776 KIAA0040 - KIAA0040 protein-coding 13-PTNLD9-TUMOR_peak_36834 chr3 177624021 177624178 + 5.94913 NA Intergenic Intergenic 89446 NR_110826 102724550 Hs.570526 NR_110826 LOC102724550 - uncharacterized LOC102724550 ncRNA 13-PTNLD9-TUMOR_peak_20046 chr16 87894300 87894404 + 5.94913 NA intron (NM_003486, intron 1 of 9) intron (NM_003486, intron 1 of 9) 8748 NM_003486 8140 Hs.513797 NM_003486 HPRD:02552 SLC7A5 4F2LC|CD98|D16S469E|E16|LAT1|MPE16|hLAT1 solute carrier family 7 (amino acid transporter light chain, L system), member 5 protein-coding 13-PTNLD9-TUMOR_peak_48030 chr7 75864523 75864625 + 5.94913 NA exon (NM_001110199, exon 2 of 15) exon (NM_001110199, exon 2 of 15) 33363 NM_001291831 222183 Hs.511025 NM_001039212 HPRD:08219 SRRM3 - serine/arginine repetitive matrix 3 protein-coding 13-PTNLD9-TUMOR_peak_51549 chr8 107072692 107072841 + 5.94913 NA promoter-TSS (NR_125796) promoter-TSS (NR_125796) -35 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 - ZFPM2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_39925 chr4 183065013 183065117 + 5.94913 NA intron (NR_027107, intron 2 of 3) CpG-20284 603 NR_027107 90768 Hs.175465 NM_178838 MGC45800 - uncharacterized LOC90768 ncRNA 13-PTNLD9-TUMOR_peak_24201 chr19 14672701 14672825 + 5.94913 NA intron (NR_038103, intron 1 of 12) intron (NR_038103, intron 1 of 12) 10126 NM_004146 4713 Hs.532853 NM_004146 HPRD:11957 NDUFB7 B18|CI-B18 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7, 18kDa protein-coding 13-PTNLD9-TUMOR_peak_20648 chr17 19770244 19770528 + 5.94913 NA intron (NM_014683, intron 1 of 26) CpG 853 NM_014683 9706 Hs.168762 NM_014683 HPRD:10556 ULK2 ATG1B|Unc51.2 unc-51 like autophagy activating kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_11317 chr11 116565768 116565873 + 5.94913 NA Intergenic Intergenic 77894 NM_032725 84811 Hs.437341 NM_032725 HPRD:11307 BUD13 Cwc26|fSAP71 BUD13 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_8367 chr10 115439607 115439717 + 5.94913 NA exon (NM_001267057, exon 1 of 7) exon (NM_001267057, exon 1 of 7) 234 NM_033338 840 Hs.9216 NM_001227 HPRD:03457 CASP7 CASP-7|CMH-1|ICE-LAP3|LICE2|MCH3 caspase 7, apoptosis-related cysteine peptidase protein-coding 13-PTNLD9-TUMOR_peak_16794 chr15 23086765 23087189 + 5.94913 NA promoter-TSS (NM_001142275) promoter-TSS (NM_001142275) -134 NM_001142275 123606 Hs.511797 NM_144599 HPRD:10487 NIPA1 FSP3|SPG6 non imprinted in Prader-Willi/Angelman syndrome 1 protein-coding 13-PTNLD9-TUMOR_peak_27421 chr2 85637769 85637889 + 5.94549 NA promoter-TSS (NM_001747) promoter-TSS (NM_001747) -9 NM_001747 822 Hs.516155 NM_001747 HPRD:01088 CAPG AFCP|HEL-S-66|MCP capping protein (actin filament), gelsolin-like protein-coding 13-PTNLD9-TUMOR_peak_16913 chr15 30678694 30678844 + 5.94549 NA intron (NM_139320, intron 2 of 9) intron (NM_139320, intron 2 of 9) 7095 NM_148911 89832 Hs.510853 NM_139320 HPRD:18704 CHRFAM7A CHRNA7|CHRNA7-DR1|D-10 CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion protein-coding 13-PTNLD9-TUMOR_peak_1614 chr1 46646022 46646161 + 5.94549 NA intron (NM_005727, intron 1 of 8) intron (NM_005727, intron 1 of 8) 5342 NM_005727 10103 Hs.38972 NM_005727 HPRD:18232 TSPAN1 NET1|TM4C|TM4SF tetraspanin 1 protein-coding 13-PTNLD9-TUMOR_peak_14787 chr13 52376429 52376561 + 5.94355 NA intron (NM_001270424, intron 1 of 9) MER5A|DNA|hAT-Charlie 1803 NM_001031719 79758 Hs.266728 NM_024705 HPRD:07833 DHRS12 SDR40C1 dehydrogenase/reductase (SDR family) member 12 protein-coding 13-PTNLD9-TUMOR_peak_21963 chr17 73029921 73030024 + 5.94355 NA intron (NR_110835, intron 1 of 7) intron (NR_110835, intron 1 of 7) 1310 NR_110835 23510 Hs.514468 NM_015353 HPRD:17176 KCTD2 - potassium channel tetramerization domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_10514 chr11 71350373 71350696 + 5.94355 NA Intergenic CpG -56613 NM_001005405 440051 Hs.679617 NM_001005405 HPRD:17248 KRTAP5-11 KRTAP5-5|KRTAP5-6|KRTAP5.11 keratin associated protein 5-11 protein-coding 13-PTNLD9-TUMOR_peak_50731 chr8 42052712 42052903 + 5.94355 NA intron (NM_000930, intron 1 of 13) intron (NM_000930, intron 1 of 13) 12387 NM_033011 5327 Hs.491582 NM_000930 HPRD:01419 PLAT T-PA|TPA plasminogen activator, tissue protein-coding 13-PTNLD9-TUMOR_peak_826 chr1 27921074 27921339 + 5.94112 NA intron (NM_001029882, intron 1 of 6) intron (NM_001029882, intron 1 of 6) 8799 NM_001029882 27245 Hs.469280 NM_001029882 HPRD:10885 AHDC1 MRD25 AT hook, DNA binding motif, containing 1 protein-coding 13-PTNLD9-TUMOR_peak_38708 chr4 82074917 82075197 + 5.94112 NA intron (NM_006259, intron 6 of 18) L1PA3|LINE|L1 254 NM_001282482 5593 Hs.232044 NM_006259 HPRD:09034 PRKG2 PRKGR2|cGK2|cGKII protein kinase, cGMP-dependent, type II protein-coding 13-PTNLD9-TUMOR_peak_37022 chr3 185266971 185267100 + 5.94112 NA intron (NM_139248, intron 1 of 9) intron (NM_139248, intron 1 of 9) 3334 NM_139248 200879 Hs.68864 NM_139248 HPRD:07392 LIPH AH|ARWH2|HYPT7|LAH2|LPDLR|PLA1B|mPA-PLA1 lipase, member H protein-coding 13-PTNLD9-TUMOR_peak_50425 chr8 27190644 27190764 + 5.94112 NA intron (NM_173174, intron 6 of 35) L2c|LINE|L2 7623 NM_173175 2185 Hs.491322 NM_004103 HPRD:03131 PTK2B CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK protein tyrosine kinase 2 beta protein-coding 13-PTNLD9-TUMOR_peak_26102 chr2 10572633 10572955 + 5.94112 NA Intergenic Intergenic 14181 NR_028374 100302743 Hs.730525 NR_028374 ENSG00000206633 SNORA80B ACA67B small nucleolar RNA, H/ACA box 80B snoRNA 13-PTNLD9-TUMOR_peak_29351 chr2 191272809 191272914 + 5.94112 NA promoter-TSS (NM_017694) promoter-TSS (NM_017694) -220 NM_017694 54842 Hs.418581 NM_017694 HPRD:13369 MFSD6 MMR2|hMMR2 major facilitator superfamily domain containing 6 protein-coding 13-PTNLD9-TUMOR_peak_7653 chr10 72434653 72434779 + 5.93881 NA exon (NM_139155, exon 2 of 22) exon (NM_139155, exon 2 of 22) 2157 NM_080722 140766 Hs.352156 NM_080722 HPRD:06329 ADAMTS14 - ADAM metallopeptidase with thrombospondin type 1 motif, 14 protein-coding 13-PTNLD9-TUMOR_peak_49561 chr7 148762333 148762462 + 5.93881 NA Intergenic Intergenic 25472 NM_152411 136051 Hs.729572 NM_152411 HPRD:13232 ZNF786 - zinc finger protein 786 protein-coding 13-PTNLD9-TUMOR_peak_23914 chr19 10138366 10138590 + 5.93823 NA Intergenic CpG -13554 NR_027300 388503 Hs.655363 NM_001013640 HPRD:18382 C3P1 CPLP complement component 3 precursor pseudogene pseudo 13-PTNLD9-TUMOR_peak_33436 chr22 46314996 46315184 + 5.93823 NA Intergenic Intergenic 57918 NM_058238 7477 Hs.512714 NM_058238 HPRD:03573 WNT7B - wingless-type MMTV integration site family, member 7B protein-coding 13-PTNLD9-TUMOR_peak_5257 chr1 206319433 206319575 + 5.93823 NA intron (NM_148964, intron 3 of 7) intron (NM_148964, intron 3 of 7) 2045 NM_148964 1510 Hs.644082 NM_001910 HPRD:00294 CTSE CATE cathepsin E protein-coding 13-PTNLD9-TUMOR_peak_53770 chr9 84440116 84440210 + 5.93823 NA Intergenic Intergenic -88189 NR_026851 347127 Hs.215235 NM_198509 ENSG00000240632 SPATA31D5P FAM75D5|FAM75D5P SPATA31 subfamily D, member 5, pseudogene pseudo 13-PTNLD9-TUMOR_peak_53975 chr9 93822829 93823005 + 5.93823 NA Intergenic Intergenic 14497 NR_033912 100129316 Hs.458154 NR_033912 LOC100129316 - uncharacterized LOC100129316 ncRNA 13-PTNLD9-TUMOR_peak_45635 chr6 85318221 85318415 + 5.93823 NA Intergenic L1HS|LINE|L1 155636 NM_001080508 9096 Hs.251830 NM_001080508 ENSG00000112837 TBX18 - T-box 18 protein-coding 13-PTNLD9-TUMOR_peak_37146 chr3 188353785 188353956 + 5.93823 NA intron (NM_001167671, intron 6 of 10) L1PA3|LINE|L1 -67416 NR_046623 100873917 Hs.674993 NR_046623 LPP-AS1 - LPP antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_20572 chr17 17861859 17861953 + 5.93823 NA intron (NM_001033551, intron 1 of 13) intron (NM_001033551, intron 1 of 13) 13878 NM_001082968 146691 Hs.462379 NM_144678 HPRD:18213 TOM1L2 - target of myb1-like 2 (chicken) protein-coding 13-PTNLD9-TUMOR_peak_15179 chr13 114894593 114894691 + 5.93823 NA intron (NM_007368, intron 1 of 23) intron (NM_007368, intron 1 of 23) 3453 NM_007368 22821 Hs.593075 NM_007368 HPRD:05537 RASA3 GAP1IP4BP|GAPIII RAS p21 protein activator 3 protein-coding 13-PTNLD9-TUMOR_peak_35355 chr3 111718087 111718207 + 5.93823 NA 5' UTR (NM_013259, exon 2 of 5) 5' UTR (NM_013259, exon 2 of 5) 140 NM_001008273 29114 Hs.169330 NM_013259 HPRD:12136 TAGLN3 NP22|NP24|NP25 transgelin 3 protein-coding 13-PTNLD9-TUMOR_peak_14422 chr13 23500219 23500446 + 5.93823 NA Intergenic Intergenic -28012 NR_033774 646201 Hs.729338 NR_033774 BASP1P1 - brain abundant, membrane attached signal protein 1 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_56723 chrX 153755762 153755856 + 5.93823 NA Intergenic Intergenic -11243 NM_001171133 60343 Hs.289108 NM_021806 HPRD:06505 FAM3A 2.19|DLD|DXS560S|XAP-7 family with sequence similarity 3, member A protein-coding 13-PTNLD9-TUMOR_peak_54509 chr9 116364485 116364609 + 5.93823 NA Intergenic Intergenic 8113 NM_001276262 5998 Hs.494875 NM_017790 HPRD:03720 RGS3 C2PA|RGP3 regulator of G-protein signaling 3 protein-coding 13-PTNLD9-TUMOR_peak_39532 chr4 145587870 145587987 + 5.93823 NA intron (NM_022475, intron 4 of 12) MIRc|SINE|MIR -20757 NR_037595 646576 Hs.632595 NR_037595 ENSG00000248890 HHIP-AS1 - HHIP antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_31731 chr20 57797674 57797800 + 5.93823 NA intron (NM_178457, intron 3 of 4) intron (NM_178457, intron 3 of 4) 31662 NM_178457 128611 Hs.473204 NM_178457 ENSG00000124203 ZNF831 C20orf174|dJ492J12.1 zinc finger protein 831 protein-coding 13-PTNLD9-TUMOR_peak_28411 chr2 129566657 129566972 + 5.93823 NA Intergenic L1MD2|LINE|L1 -55360 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 13-PTNLD9-TUMOR_peak_37745 chr4 5526325 5526608 + 5.93823 NA promoter-TSS (NM_005750) promoter-TSS (NM_005750) -417 NM_005750 10141 Hs.177972 NM_005750 HPRD:12826 C4orf6 aC1 chromosome 4 open reading frame 6 protein-coding 13-PTNLD9-TUMOR_peak_50419 chr8 27114673 27114781 + 5.93823 NA intron (NM_001283054, intron 1 of 5) intron (NM_001283054, intron 1 of 5) 1229 NM_001283053 81551 Hs.201058 NM_030795 HPRD:18120 STMN4 RB3 stathmin-like 4 protein-coding 13-PTNLD9-TUMOR_peak_2559 chr1 95063381 95063511 + 5.93823 NA Intergenic MIRb|SINE|MIR -56033 NM_001993 2152 Hs.62192 NM_001993 HPRD:00603 F3 CD142|TF|TFA coagulation factor III (thromboplastin, tissue factor) protein-coding 13-PTNLD9-TUMOR_peak_56421 chrX 119444402 119444496 + 5.93823 NA intron (NM_017938, intron 1 of 9) intron (NM_017938, intron 1 of 9) 942 NM_001104545 55026 Hs.437563 NM_017938 HPRD:06535 TMEM255A FAM70A transmembrane protein 255A protein-coding 13-PTNLD9-TUMOR_peak_21549 chr17 54366204 54366338 + 5.93823 NA intron (NM_153228, intron 2 of 16) L2|LINE|L2 135435 NM_153228 162282 Hs.673040 NM_153228 HPRD:08238 ANKFN1 - ankyrin-repeat and fibronectin type III domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_53862 chr9 89216741 89216975 + 5.93823 NA Intergenic Intergenic -247456 NM_001185059 79670 Hs.597057 NM_024617 HPRD:11697 ZCCHC6 PAPD6|TUT7 zinc finger, CCHC domain containing 6 protein-coding 13-PTNLD9-TUMOR_peak_3665 chr1 152025177 152025320 + 5.93692 NA Intergenic Intergenic -15737 NM_005620 6282 Hs.417004 NM_005620 HPRD:04385 S100A11 HEL-S-43|MLN70|S100C S100 calcium binding protein A11 protein-coding 13-PTNLD9-TUMOR_peak_26615 chr2 38304051 38304311 + 5.93252 NA promoter-TSS (NM_000104) promoter-TSS (NM_000104) -858 NM_000104 1545 Hs.154654 NM_000104 HPRD:03464 CYP1B1 CP1B|CYPIB1|GLC3A|P4501B1 cytochrome P450, family 1, subfamily B, polypeptide 1 protein-coding 13-PTNLD9-TUMOR_peak_28896 chr2 161267796 161267891 + 5.93252 NA intron (NM_016836, intron 1 of 13) MLT1M|LTR|ERVL-MaLR -3450 NR_039946 100616364 NR_039946 MIR4785 - microRNA 4785 ncRNA 13-PTNLD9-TUMOR_peak_46326 chr6 151612588 151612831 + 5.93239 NA intron (NM_005100, intron 2 of 4) intron (NM_005100, intron 2 of 4) -33957 NM_144497 9590 Hs.371240 NM_005100 HPRD:05263 AKAP12 AKAP250|SSeCKS A kinase (PRKA) anchor protein 12 protein-coding 13-PTNLD9-TUMOR_peak_29503 chr2 201248594 201248695 + 5.93239 NA intron (NM_001282743, intron 2 of 11) intron (NM_001282743, intron 2 of 11) 74971 NM_001282744 26010 Hs.120323 NM_015535 HPRD:10916 SPATS2L DNAPTP6|SGNP spermatogenesis associated, serine-rich 2-like protein-coding 13-PTNLD9-TUMOR_peak_48113 chr7 77780637 77780977 + 5.93239 NA intron (NM_001301128, intron 15 of 20) intron (NM_001301128, intron 15 of 20) -195752 NR_003680 399670 Hs.568045 NR_003680 HPRD:14588 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 13-PTNLD9-TUMOR_peak_14635 chr13 41078381 41078631 + 5.93239 NA Intergenic Intergenic -23363 NR_024505 646982 Hs.287664 NR_024505 LINC00598 TTL long intergenic non-protein coding RNA 598 ncRNA 13-PTNLD9-TUMOR_peak_48378 chr7 96017612 96017712 + 5.93239 NA Intergenic L3|LINE|CR1 -66203 NR_027662 10165 Hs.489190 NM_014251 HPRD:04837 SLC25A13 ARALAR2|CITRIN|CTLN2 solute carrier family 25 (aspartate/glutamate carrier), member 13 protein-coding 13-PTNLD9-TUMOR_peak_34044 chr3 22286752 22286913 + 5.93239 NA Intergenic Intergenic 288201 NR_046876 100874221 Hs.160616 NR_046876 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_48876 chr7 117417559 117417795 + 5.93239 NA exon (NM_033427, exon 8 of 23) exon (NM_033427, exon 8 of 23) 95884 NM_033427 83992 Hs.592285 NM_033427 HPRD:09890 CTTNBP2 C7orf8|CORTBP2|Orf4 cortactin binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_4979 chr1 201728762 201728856 + 5.93239 NA intron (NM_001167738, intron 1 of 26) intron (NM_001167738, intron 1 of 26) 19846 NM_001167738 89796 Hs.585374 NM_020443 HPRD:10113 NAV1 POMFIL3|STEERIN1|UNC53H1 neuron navigator 1 protein-coding 13-PTNLD9-TUMOR_peak_45838 chr6 107271896 107272105 + 5.93239 NA Intergenic Intergenic -36700 NR_033557 100422737 Hs.634681 NR_033557 ENSG00000235142 LOC100422737 - uncharacterized LOC100422737 ncRNA 13-PTNLD9-TUMOR_peak_51233 chr8 86544784 86544878 + 5.93239 NA Intergenic AluSx|SINE|Alu 23074 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene) pseudo 13-PTNLD9-TUMOR_peak_19756 chr16 74764255 74764385 + 5.93239 NA intron (NM_024306, intron 2 of 6) intron (NM_024306, intron 2 of 6) -29531 NM_001142497 197259 Hs.119878 NM_152649 HPRD:08752 MLKL hMLKL mixed lineage kinase domain-like protein-coding 13-PTNLD9-TUMOR_peak_22573 chr18 10062286 10062591 + 5.93239 NA Intergenic Intergenic 148483 NM_003574 9218 Hs.165195 NM_003574 HPRD:09299 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP (vesicle-associated membrane protein)-associated protein A, 33kDa protein-coding 13-PTNLD9-TUMOR_peak_55602 chrX 19002513 19002607 + 5.93239 NA promoter-TSS (NM_000292) promoter-TSS (NM_000292) -80 NM_000292 5256 Hs.54941 NM_000292 HPRD:02380 PHKA2 GSD9A|PHK|PYK|PYKL|XLG|XLG2 phosphorylase kinase, alpha 2 (liver) protein-coding 13-PTNLD9-TUMOR_peak_54986 chr9 136351568 136351662 + 5.93239 NA Intergenic Intergenic -7339 NM_017585 11182 Hs.244378 NM_017585 HPRD:06010 SLC2A6 GLUT6|GLUT9|HSA011372 solute carrier family 2 (facilitated glucose transporter), member 6 protein-coding 13-PTNLD9-TUMOR_peak_23048 chr18 43733052 43733162 + 5.92688 NA Intergenic Intergenic -20881 NM_001008239 147339 Hs.116486 NM_145055 HPRD:12690 C18orf25 ARKL1|RNF111L1 chromosome 18 open reading frame 25 protein-coding 13-PTNLD9-TUMOR_peak_37792 chr4 6749604 6749754 + 5.92688 NA Intergenic Intergenic 31837 NM_018366 55330 Hs.7570 NM_018366 HPRD:12035 BLOC1S4 BCAS4L|BLOS4|CNO biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino protein-coding 13-PTNLD9-TUMOR_peak_11279 chr11 114167005 114167117 + 5.92688 NA 5' UTR (NM_006169, exon 1 of 3) 5' UTR (NM_006169, exon 1 of 3) 526 NM_006169 4837 Hs.503911 NM_006169 HPRD:02478 NNMT - nicotinamide N-methyltransferase protein-coding 13-PTNLD9-TUMOR_peak_22457 chr18 3247391 3247567 + 5.92143 NA promoter-TSS (NM_006471) promoter-TSS (NM_006471) -49 NM_006471 10627 Hs.190086 NM_006471 HPRD:14735 MYL12A HEL-S-24|MLCB|MRCL3|MRLC3|MYL2B myosin, light chain 12A, regulatory, non-sarcomeric protein-coding 13-PTNLD9-TUMOR_peak_26840 chr2 47197860 47198058 + 5.92143 NA intron (NM_001288955, intron 3 of 18) intron (NM_001288955, intron 3 of 18) -28965 NM_001171511 90411 Hs.662152 NM_139279 HPRD:09693 MCFD2 F5F8D|F5F8D2|LMAN1IP|SDNSF multiple coagulation factor deficiency 2 protein-coding 13-PTNLD9-TUMOR_peak_1718 chr1 48849854 48849989 + 5.92143 NA intron (NM_019073, intron 9 of 12) SVA_E|Other|Other 87959 NM_001286238 54558 Hs.538103 NM_019073 HPRD:15430 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 13-PTNLD9-TUMOR_peak_37025 chr3 185276901 185277087 + 5.92143 NA Intergenic Intergenic -6625 NM_139248 200879 Hs.68864 NM_139248 HPRD:07392 LIPH AH|ARWH2|HYPT7|LAH2|LPDLR|PLA1B|mPA-PLA1 lipase, member H protein-coding 13-PTNLD9-TUMOR_peak_20824 chr17 29907711 29907879 + 5.91919 NA Intergenic Intergenic 5365 NR_029856 100126356 NR_029856 miRBase:MI0000769 MIR365B MIR365-2|MIRN365-2|hsa-mir-365b microRNA 365b ncRNA 13-PTNLD9-TUMOR_peak_34475 chr3 47844836 47844993 + 5.91919 NA intron (NR_075079, intron 1 of 3) CpG 515 NM_014966 22907 Hs.517948 NM_014966 HPRD:13142 DHX30 DDX30|RETCOR DEAH (Asp-Glu-Ala-His) box helicase 30 protein-coding 13-PTNLD9-TUMOR_peak_31057 chr20 39259921 39260099 + 5.91919 NA Intergenic Intergenic 57870 NM_005461 9935 Hs.169487 NM_005461 HPRD:07129 MAFB KRML|MCTO v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog B protein-coding 13-PTNLD9-TUMOR_peak_44600 chr6 32054973 32055112 + 5.91919 NA intron (NM_019105, intron 6 of 43) intron (NM_019105, intron 6 of 43) 22109 NM_019105 7148 Hs.485104 NM_019105 HPRD:02993 TNXB EDS3|HXBL|TENX|TN-X|TNX|TNXB1|TNXB2|TNXBS|XB|XBS tenascin XB protein-coding 13-PTNLD9-TUMOR_peak_39247 chr4 122871474 122871569 + 5.91919 NA intron (NM_001130698, intron 1 of 11) CpG 1388 NM_001130698 7222 Hs.150981 NM_003305 HPRD:15999 TRPC3 TRP3 transient receptor potential cation channel, subfamily C, member 3 protein-coding 13-PTNLD9-TUMOR_peak_50357 chr8 23608308 23608494 + 5.91919 NA Intergenic Intergenic -44290 NM_001136271 137814 Hs.532654 NM_001136271 ENSG00000180053 NKX2-6 CSX2|CTHM|NKX2F|NKX4-2 NK2 homeobox 6 protein-coding 13-PTNLD9-TUMOR_peak_36256 chr3 143446319 143446480 + 5.91919 NA intron (NM_173653, intron 4 of 15) intron (NM_173653, intron 4 of 15) 120974 NM_173653 285195 Hs.302257 NM_173653 HPRD:12226 SLC9A9 AUTS16|NHE9 solute carrier family 9, subfamily A (NHE9, cation proton antiporter 9), member 9 protein-coding 13-PTNLD9-TUMOR_peak_18082 chr15 100472309 100472436 + 5.91919 NA Intergenic Intergenic -125240 NR_003260 196968 Hs.567763 NM_194295 HPRD:13192 DNM1P46 C15orf51|DNM1DN14.2|DNM1DN14@ DNM1 pseudogene 46 pseudo 13-PTNLD9-TUMOR_peak_8027 chr10 94352755 94352880 + 5.91919 NA promoter-TSS (NM_004523) promoter-TSS (NM_004523) -8 NM_004523 3832 Hs.8878 NM_004523 HPRD:01023 KIF11 EG5|HKSP|KNSL1|MCLMR|TRIP5 kinesin family member 11 protein-coding 13-PTNLD9-TUMOR_peak_36070 chr3 137179536 137179713 + 5.91919 NA Intergenic L1PA3|LINE|L1 -303510 NM_004189 8403 Hs.248184 NM_004189 SOX14 SOX28 SRY (sex determining region Y)-box 14 protein-coding 13-PTNLD9-TUMOR_peak_37591 chr4 1729235 1729361 + 5.91919 NA intron (NM_006342, intron 3 of 15) MER54A|LTR|ERVL 6081 NM_006342 10460 Hs.104019 NM_006342 HPRD:05601 TACC3 ERIC-1|ERIC1 transforming, acidic coiled-coil containing protein 3 protein-coding 13-PTNLD9-TUMOR_peak_15737 chr14 51298085 51298191 + 5.91919 NA promoter-TSS (NM_016350) promoter-TSS (NM_016350) -299 NM_182946 51199 Hs.310429 NM_016350 HPRD:09785 NIN SCKL7 ninein (GSK3B interacting protein) protein-coding 13-PTNLD9-TUMOR_peak_44136 chr6 24668857 24668979 + 5.91877 NA intron (NM_018473, intron 1 of 2) MER51A|LTR|ERV1 1655 NM_001160094 55856 Hs.731605 NM_018473 HPRD:07158 ACOT13 PNAS-27|THEM2 acyl-CoA thioesterase 13 protein-coding 13-PTNLD9-TUMOR_peak_37309 chr3 194039868 194040310 + 5.91877 NA Intergenic LTR33A|LTR|ERVL -9496 NR_024480 100131551 Hs.128066 NR_024480 ENSG00000214145 LINC00887 - long intergenic non-protein coding RNA 887 ncRNA 13-PTNLD9-TUMOR_peak_24443 chr19 19173413 19173509 + 5.91877 NA Intergenic Intergenic -1342 NM_178526 284439 Hs.303669 NM_178526 HPRD:17523 SLC25A42 - solute carrier family 25, member 42 protein-coding 13-PTNLD9-TUMOR_peak_21777 chr17 62776532 62776656 + 5.91877 NA promoter-TSS (NR_106728) promoter-TSS (NR_106728) -283 NR_106728 102464831 NR_106728 MIR6080 hsa-mir-6080 microRNA 6080 ncRNA 13-PTNLD9-TUMOR_peak_22788 chr18 21406949 21407174 + 5.91877 NA intron (NM_198129, intron 22 of 74) intron (NM_198129, intron 22 of 74) -45923 NM_001127718 3909 Hs.436367 NM_000227 HPRD:02883 LAMA3 BM600|E170|LAMNA|LOCS|lama3a laminin, alpha 3 protein-coding 13-PTNLD9-TUMOR_peak_32949 chr22 24585232 24585563 + 5.91724 NA TTS (NM_019601) TTS (NM_019601) 7953 NM_019601 56241 Hs.131819 NM_019601 HPRD:18132 SUSD2 BK65A6.2 sushi domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_27909 chr2 105855386 105855513 + 5.91724 NA Intergenic Intergenic -2751 NM_007227 11250 Hs.590903 NM_007227 HPRD:05325 GPR45 PSP24|PSP24(ALPHA)|PSP24A G protein-coupled receptor 45 protein-coding 13-PTNLD9-TUMOR_peak_39931 chr4 183159641 183159859 + 5.91724 NA Intergenic L2b|LINE|L2 69304 NR_031640 100302270 NR_031640 miRBase:MI0006372 MIR1305 MIRN1305|hsa-mir-1305 microRNA 1305 ncRNA 13-PTNLD9-TUMOR_peak_13838 chr12 111016201 111016318 + 5.91724 NA intron (NM_139283, intron 1 of 5) intron (NM_139283, intron 1 of 5) 4805 NM_139283 160760 Hs.13854 NM_139283 PPTC7 TA-PP2C|TAPP2C PTC7 protein phosphatase homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_55230 chrUn_gl000216 13636 13823 + 5.91565 NA NA (CATTC)n|Satellite|Satellite NA NA 13-PTNLD9-TUMOR_peak_23990 chr19 11263446 11263645 + 5.91182 NA intron (NM_182513, intron 1 of 4) intron (NM_182513, intron 1 of 4) 2939 NM_182513 147841 Hs.381225 NM_182513 SPC24 SPBC24 SPC24, NDC80 kinetochore complex component protein-coding 13-PTNLD9-TUMOR_peak_434 chr1 11863581 11863825 + 5.90623 NA intron (NM_005957, intron 1 of 11) intron (NM_005957, intron 1 of 11) -2450 NM_001256959 1185 Hs.193043 NM_001286 HPRD:04102 CLCN6 CLC-6 chloride channel, voltage-sensitive 6 protein-coding 13-PTNLD9-TUMOR_peak_54532 chr9 117134337 117134528 + 5.90541 NA intron (NM_030767, intron 4 of 21) intron (NM_030767, intron 4 of 21) 22253 NM_030767 80709 Hs.494895 NM_030767 HPRD:16148 AKNA - AT-hook transcription factor protein-coding 13-PTNLD9-TUMOR_peak_37894 chr4 8504679 8504775 + 5.90541 NA Intergenic Intergenic 62195 NM_152544 152992 Hs.566191 NM_024950 HPRD:08760 TRMT44 C4orf23|METTL19|TRM44 tRNA methyltransferase 44 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_14574 chr13 34212271 34212365 + 5.90541 NA intron (NM_001243476, intron 3 of 17) intron (NM_001243476, intron 3 of 17) 38654 NM_001243476 90627 Hs.156551 NM_052851 HPRD:11607 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR-related lipid transfer (START) domain containing 13 protein-coding 13-PTNLD9-TUMOR_peak_5851 chr1 233004564 233004776 + 5.90541 NA Intergenic Intergenic 64032 NM_019090 54627 Hs.160373 NM_019090 ENSG00000212916 MAP10 KIAA1383|MTR120 microtubule-associated protein 10 protein-coding 13-PTNLD9-TUMOR_peak_36072 chr3 137335256 137335365 + 5.90541 NA Intergenic AluJr|SINE|Alu -147824 NM_004189 8403 Hs.248184 NM_004189 SOX14 SOX28 SRY (sex determining region Y)-box 14 protein-coding 13-PTNLD9-TUMOR_peak_17090 chr15 40762649 40762743 + 5.90541 NA promoter-TSS (NM_130468) promoter-TSS (NM_130468) -464 NM_130468 113189 Hs.442449 NM_130468 HPRD:16780 CHST14 ATCS|D4ST1|EDSMC1|HNK1ST carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14 protein-coding 13-PTNLD9-TUMOR_peak_54461 chr9 115095213 115095496 + 5.90541 NA promoter-TSS (NM_001244898) promoter-TSS (NM_001244898) -48 NM_001244898 9991 Hs.269988 NM_005156 HPRD:09603 PTBP3 ROD1 polypyrimidine tract binding protein 3 protein-coding 13-PTNLD9-TUMOR_peak_35980 chr3 133380789 133380984 + 5.90541 NA promoter-TSS (NM_007027) promoter-TSS (NM_007027) -149 NM_007027 11073 Hs.593379 NM_007027 HPRD:09678 TOPBP1 TOP2BP1 topoisomerase (DNA) II binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_11841 chr12 3148207 3148321 + 5.90541 NA intron (NM_201441, intron 10 of 11) intron (NM_201441, intron 10 of 11) -38257 NM_001168320 10867 Hs.504517 NM_006675 HPRD:14823 TSPAN9 NET-5|NET5|PP1057 tetraspanin 9 protein-coding 13-PTNLD9-TUMOR_peak_1387 chr1 42179734 42179838 + 5.90411 NA intron (NM_024503, intron 1 of 8) intron (NM_024503, intron 1 of 8) 204592 NM_024503 59269 Hs.403972 NM_024503 HPRD:09442 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 13-PTNLD9-TUMOR_peak_15250 chr14 21093560 21093713 + 5.90411 NA Intergenic Intergenic 16214 NM_001001968 341799 Hs.513132 NM_001001968 HPRD:17779 OR6S1 OR14-37|OR6S1Q olfactory receptor, family 6, subfamily S, member 1 protein-coding 13-PTNLD9-TUMOR_peak_42620 chr5 149624956 149625139 + 5.90411 NA intron (NM_171825, intron 12 of 17) intron (NM_171825, intron 12 of 17) 44356 NM_015981 815 Hs.743976 NM_015981 HPRD:06532 CAMK2A CAMKA calcium/calmodulin-dependent protein kinase II alpha protein-coding 13-PTNLD9-TUMOR_peak_7332 chr10 50396677 50396812 + 5.90411 NA promoter-TSS (NM_001288740) promoter-TSS (NM_001288740) -299 NM_001288742 170371 Hs.385493 NM_001010863 C10orf128 - chromosome 10 open reading frame 128 protein-coding 13-PTNLD9-TUMOR_peak_42857 chr5 159714678 159714772 + 5.90411 NA intron (NM_024565, intron 2 of 6) intron (NM_024565, intron 2 of 6) 24848 NM_024565 79616 Hs.14070 NM_024565 HPRD:07853 CCNJL - cyclin J-like protein-coding 13-PTNLD9-TUMOR_peak_24744 chr19 35598519 35598613 + 5.90411 NA Intergenic Intergenic -1358 NR_024562 100128675 Hs.633989 NR_024561 ENSG00000227392 HPN-AS1 - HPN antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_47585 chr7 57472364 57472512 + 5.90411 NA promoter-TSS (NR_036102) promoter-TSS (NR_036102) -293 NR_036102 100422939 NR_036102 miRBase:MI0014173 MIR3147 - microRNA 3147 ncRNA 13-PTNLD9-TUMOR_peak_39778 chr4 159992713 159992816 + 5.90411 NA Intergenic Intergenic -36431 NM_152543 152940 Hs.415576 NM_152543 C4orf45 - chromosome 4 open reading frame 45 protein-coding 13-PTNLD9-TUMOR_peak_41592 chr5 97650043 97650253 + 5.90411 NA Intergenic Intergenic -454851 NM_001012761 285704 Hs.526902 NM_173670 HPRD:15243 RGMB DRAGON repulsive guidance molecule family member b protein-coding 13-PTNLD9-TUMOR_peak_9745 chr11 47879782 47879876 + 5.90411 NA Intergenic Intergenic -9772 NM_015231 23279 Hs.744107 NM_015231 HPRD:16254 NUP160 - nucleoporin 160kDa protein-coding 13-PTNLD9-TUMOR_peak_8250 chr10 105128118 105128212 + 5.90411 NA exon (NM_006951, exon 1 of 11) exon (NM_006951, exon 1 of 11) 441 NM_006951 6877 Hs.96103 NM_006951 HPRD:11876 TAF5 TAF2D|TAFII100 TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 100kDa protein-coding 13-PTNLD9-TUMOR_peak_41956 chr5 127207611 127207750 + 5.90411 NA Intergenic Intergenic 211086 NR_015360 644873 Hs.340623 NR_015360 ENSG00000245937 LINC01184 - long intergenic non-protein coding RNA 1184 ncRNA 13-PTNLD9-TUMOR_peak_38029 chr4 15679500 15679632 + 5.90411 NA Intergenic MER21C|LTR|ERVL -3786 NM_001145191 285550 Hs.399980 NM_001145191 FAM200B - family with sequence similarity 200, member B protein-coding 13-PTNLD9-TUMOR_peak_24522 chr19 22610524 22610807 + 5.90411 NA Intergenic Intergenic -5517 NM_001098626 148198 Hs.667355 NM_001098626 ENSG00000197360 ZNF98 F7175|ZNF739 zinc finger protein 98 protein-coding 13-PTNLD9-TUMOR_peak_10647 chr11 75141197 75141396 + 5.89923 NA exon (NM_001039548, exon 1 of 6) exon (NM_001039548, exon 1 of 6) 378 NM_001039548 283212 Hs.292451 NM_173583 HPRD:08747 KLHL35 - kelch-like family member 35 protein-coding 13-PTNLD9-TUMOR_peak_54733 chr9 126117243 126117416 + 5.89923 NA Intergenic Intergenic -1117 NM_173689 286204 Hs.568340 NM_173689 HPRD:13093 CRB2 - crumbs family member 2 protein-coding 13-PTNLD9-TUMOR_peak_36512 chr3 156845706 156845856 + 5.89807 NA Intergenic Intergenic -4990 NR_034007 339894 Hs.478050 NR_034007 ENSG00000243629 LINC00880 - long intergenic non-protein coding RNA 880 ncRNA 13-PTNLD9-TUMOR_peak_51241 chr8 86728463 86728631 + 5.89695 NA TTS (NR_003594).3 TTS (NR_003594).3 1474 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene) pseudo 13-PTNLD9-TUMOR_peak_31288 chr20 46239348 46239442 + 5.89265 NA intron (NM_001174088, intron 2 of 22) intron (NM_001174088, intron 2 of 22) 108794 NM_001174088 8202 Hs.592142 NM_006534 HPRD:03570 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 13-PTNLD9-TUMOR_peak_17907 chr15 86343845 86344058 + 5.89265 NA Intergenic Intergenic -5762 NM_022480 64410 Hs.498371 NM_022480 HPRD:07780 KLHL25 ENC-2|ENC2 kelch-like family member 25 protein-coding 13-PTNLD9-TUMOR_peak_35172 chr3 99357409 99357534 + 5.89265 NA promoter-TSS (NM_001850) promoter-TSS (NM_001850) 31 NM_001850 1295 Hs.654548 NM_001850 HPRD:00372 COL8A1 C3orf7 collagen, type VIII, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_5596 chr1 224840130 224840224 + 5.89265 NA intron (NM_152495, intron 1 of 5) intron (NM_152495, intron 1 of 5) 35998 NM_152495 149111 Hs.731723 NM_152495 HPRD:08799 CNIH3 CNIH-3 cornichon family AMPA receptor auxiliary protein 3 protein-coding 13-PTNLD9-TUMOR_peak_15716 chr14 50692175 50692338 + 5.89265 NA intron (NM_006939, intron 1 of 22) intron (NM_006939, intron 1 of 22) 5843 NM_006939 6655 Hs.291533 NM_006939 HPRD:03149 SOS2 - son of sevenless homolog 2 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_27830 chr2 101349961 101350072 + 5.89265 NA Intergenic Intergenic -86597 NM_002518 4862 Hs.156832 NM_002518 HPRD:09137 NPAS2 MOP4|PASD4|bHLHe9 neuronal PAS domain protein 2 protein-coding 13-PTNLD9-TUMOR_peak_14973 chr13 97908637 97908923 + 5.89265 NA intron (NM_144778, intron 1 of 8) intron (NM_144778, intron 1 of 8) 34230 NM_144778 10150 Hs.657347 NM_144778 HPRD:09543 MBNL2 MBLL|MBLL39|PRO2032 muscleblind-like splicing regulator 2 protein-coding 13-PTNLD9-TUMOR_peak_46077 chr6 133823701 133823800 + 5.89265 NA non-coding (NR_109982, exon 9 of 9) non-coding (NR_109982, exon 9 of 9) 261113 NM_001301013 2070 Hs.596680 NM_004100 HPRD:04648 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 13-PTNLD9-TUMOR_peak_27373 chr2 81877299 81877421 + 5.89265 NA Intergenic LTR10F|LTR|ERV1 -183290 NR_110161 100507201 Hs.98589 NR_110161 LOC100507201 - uncharacterized LOC100507201 ncRNA 13-PTNLD9-TUMOR_peak_419 chr1 11591432 11591573 + 5.89265 NA intron (NM_020780, intron 16 of 20) intron (NM_020780, intron 16 of 20) 52207 NM_020780 57540 Hs.202355 NM_020780 ENSG00000204624 PTCHD2 DISP3 patched domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_45927 chr6 112789731 112789846 + 5.89265 NA Intergenic LTR23|LTR|ERV1 121256 NM_001013734 442247 Hs.448264 NM_001013734 HPRD:18472 RFPL4B RNF211 ret finger protein-like 4B protein-coding 13-PTNLD9-TUMOR_peak_43485 chr6 2960665 2960844 + 5.89265 NA intron (NM_001297700, intron 1 of 6) intron (NM_001297700, intron 1 of 6) 1650 NM_001271825 5269 Hs.519523 NM_004568 HPRD:01413 SERPINB6 CAP|DFNB91|MSTP057|PI-6|PI6|PTI|SPI3 serpin peptidase inhibitor, clade B (ovalbumin), member 6 protein-coding 13-PTNLD9-TUMOR_peak_29252 chr2 181572665 181572820 + 5.89265 NA intron (NR_104319, intron 1 of 4) intron (NR_104319, intron 1 of 4) 15911 NR_104320 101669767 NR_104319 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_37731 chr4 4945807 4945945 + 5.89265 NA Intergenic Intergenic 75321 NM_018659 54360 Hs.13872 NM_018659 HPRD:16260 CYTL1 C17|C4orf4 cytokine-like 1 protein-coding 13-PTNLD9-TUMOR_peak_51556 chr8 107410696 107410828 + 5.89265 NA intron (NM_018002, intron 2 of 15) intron (NM_018002, intron 2 of 15) -49390 NM_001198532 55074 Hs.127286 NM_018002 HPRD:16126 OXR1 TLDC3 oxidation resistance 1 protein-coding 13-PTNLD9-TUMOR_peak_5168 chr1 204695335 204695429 + 5.89265 NA Intergenic Intergenic -40785 NM_201630 10446 Hs.26312 NM_006338 HPRD:16109 LRRN2 FIGLER7|GAC1|LRANK1|LRRN5 leucine rich repeat neuronal 2 protein-coding 13-PTNLD9-TUMOR_peak_28944 chr2 164064584 164064816 + 5.89265 NA Intergenic Intergenic -369443 NM_033272 90134 Hs.657413 NM_033272 HPRD:16295 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel, subfamily H (eag-related), member 7 protein-coding 13-PTNLD9-TUMOR_peak_40846 chr5 52333384 52333570 + 5.89265 NA intron (NR_073106, intron 2 of 29) intron (NR_073106, intron 2 of 29) 48321 NR_073106 3673 Hs.482077 NM_002203 HPRD:01893 ITGA2 BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2 integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) protein-coding 13-PTNLD9-TUMOR_peak_37018 chr3 185138739 185138895 + 5.89265 NA intron (NM_004721, intron 1 of 13) intron (NM_004721, intron 1 of 13) 57981 NM_004721 9175 Hs.591306 NM_004721 HPRD:05372 MAP3K13 LZK|MEKK13|MLK mitogen-activated protein kinase kinase kinase 13 protein-coding 13-PTNLD9-TUMOR_peak_29304 chr2 187191002 187191096 + 5.89265 NA Intergenic MER39|LTR|ERV1 -159836 NM_018471 55854 Hs.741180 NM_018471 HPRD:13988 ZC3H15 HT010|LEREPO4|MSTP012 zinc finger CCCH-type containing 15 protein-coding 13-PTNLD9-TUMOR_peak_14141 chr12 122803293 122803535 + 5.89265 NA intron (NM_198240, intron 16 of 23) intron (NM_198240, intron 16 of 23) -52346 NM_022916 65082 Hs.592009 NM_022916 HPRD:15651 VPS33A - vacuolar protein sorting 33 homolog A (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_20651 chr17 19967009 19967117 + 5.89265 NA intron (NM_001243439, intron 1 of 14) LTR79|LTR|ERVL -23272 NM_001033553 92521 Hs.431045 NM_152904 HPRD:12301 SPECC1 CYTSB|HCMOGT-1|HCMOGT1|NSP sperm antigen with calponin homology and coiled-coil domains 1 protein-coding 13-PTNLD9-TUMOR_peak_34845 chr3 64475091 64475187 + 5.89265 NA Intergenic Intergenic -71883 NR_110151 101929335 Hs.476604 NR_110150 ADAMTS9-AS1 - ADAMTS9 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_572 chr1 17877629 17877834 + 5.89265 NA intron (NM_018125, intron 1 of 28) L2b|LINE|L2 11401 NM_018125 55160 Hs.443460 NM_018125 HPRD:07679 ARHGEF10L GrinchGEF Rho guanine nucleotide exchange factor (GEF) 10-like protein-coding 13-PTNLD9-TUMOR_peak_52246 chr8 137678463 137678688 + 5.89265 NA Intergenic MLT1F1|LTR|ERVL-MaLR 747256 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 13-PTNLD9-TUMOR_peak_53233 chr9 39030756 39030937 + 5.89265 NA Intergenic MIR|SINE|MIR 257454 NM_033655 79937 Hs.128474 NM_033655 HPRD:10842 CNTNAP3 CASPR3|CNTNAP3A contactin associated protein-like 3 protein-coding 13-PTNLD9-TUMOR_peak_56184 chrX 77041683 77041796 + 5.89265 NA promoter-TSS (NM_000489) promoter-TSS (NM_000489) 16 NM_138270 546 Hs.533526 NM_000489 HPRD:02069 ATRX ATR2|JMS|MRXHF1|RAD54|RAD54L|SFM1|SHS|XH2|XNP|ZNF-HX alpha thalassemia/mental retardation syndrome X-linked protein-coding 13-PTNLD9-TUMOR_peak_54288 chr9 107526381 107526507 + 5.89265 NA promoter-TSS (NM_018376) promoter-TSS (NM_018376) -7 NM_018376 55335 Hs.429294 NM_018376 HPRD:16400 NIPSNAP3B NIPSNAP3 nipsnap homolog 3B (C. elegans) protein-coding 13-PTNLD9-TUMOR_peak_43526 chr6 3382063 3382246 + 5.89265 NA intron (NR_104448, intron 3 of 11) intron (NR_104448, intron 3 of 11) 63093 NR_104448 63027 Hs.713588 NM_015482 HPRD:12904 SLC22A23 C6orf85 solute carrier family 22, member 23 protein-coding 13-PTNLD9-TUMOR_peak_44207 chr6 26126396 26126523 + 5.89177 NA Intergenic Intergenic 2086 NM_003512 8334 Hs.484950 NM_003512 HPRD:09104 HIST1H2AC H2A/l|H2AFL|dJ221C16.4 histone cluster 1, H2ac protein-coding 13-PTNLD9-TUMOR_peak_2683 chr1 104240153 104240346 + 5.89177 NA Intergenic HERVE_a-int|LTR|ERV1 -1176 NM_001008221 276 Hs.655232 NM_004038 HPRD:00096 AMY1A AMY1 amylase, alpha 1A (salivary) protein-coding 13-PTNLD9-TUMOR_peak_1563 chr1 45284953 45285047 + 5.89005 NA TTS (NM_001166292) TTS (NM_001166292) 10846 NM_001136537 149478 Hs.632400 NM_001136537 ENSG00000222009 BTBD19 - BTB (POZ) domain containing 19 protein-coding 13-PTNLD9-TUMOR_peak_18298 chr16 3071866 3072065 + 5.88951 NA TTS (NM_001288665) TTS (NM_001288665) 1652 NM_016639 51330 Hs.355899 NM_016639 HPRD:05801 TNFRSF12A CD266|FN14|TWEAKR tumor necrosis factor receptor superfamily, member 12A protein-coding 13-PTNLD9-TUMOR_peak_31041 chr20 38915962 38916113 + 5.88941 NA Intergenic Intergenic 282934 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 - long intergenic non-protein coding RNA 1370 ncRNA 13-PTNLD9-TUMOR_peak_15702 chr14 50417121 50417217 + 5.88941 NA Intergenic Intergenic -15948 NR_106724 102464828 NR_106724 MIR6076 hsa-mir-6076 microRNA 6076 ncRNA 13-PTNLD9-TUMOR_peak_53252 chr9 40071781 40071887 + 5.88941 NA Intergenic MIR|SINE|MIR 171488 NR_026803 401507 Hs.553802 NM_001012278 HPRD:17394 FAM74A1 FAM74A5 family with sequence similarity 74, member A1 ncRNA 13-PTNLD9-TUMOR_peak_53097 chr9 35026233 35026422 + 5.88941 NA Intergenic MER41A|LTR|ERV1 -14765 NM_001040411 138724 Hs.148250 NM_203299 HPRD:14616 C9orf131 - chromosome 9 open reading frame 131 protein-coding 13-PTNLD9-TUMOR_peak_47242 chr7 36429971 36430070 + 5.88941 NA promoter-TSS (NM_001100425) promoter-TSS (NM_001100425) -286 NM_001100425 23366 Hs.6224 NM_015314 HPRD:17197 KIAA0895 - KIAA0895 protein-coding 13-PTNLD9-TUMOR_peak_19278 chr16 48560557 48560653 + 5.88941 NA Intergenic Intergenic 83515 NM_153029 9683 Hs.511839 NM_153029 HPRD:08109 N4BP1 - NEDD4 binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_52525 chr8 145669573 145669667 + 5.88941 NA exon (NM_013432, exon 2 of 26) exon (NM_013432, exon 2 of 26) 192 NM_013432 4796 Hs.675285 NM_013432 HPRD:05180 TONSL IKBR|NFKBIL2 tonsoku-like, DNA repair protein protein-coding 13-PTNLD9-TUMOR_peak_37251 chr3 192233117 192233294 + 5.88941 NA intron (NM_004113, intron 2 of 5) intron (NM_004113, intron 2 of 5) -106367 NM_021032 2257 Hs.390250 NM_004113 HPRD:03303 FGF12 FGF12B|FHF1 fibroblast growth factor 12 protein-coding 13-PTNLD9-TUMOR_peak_28766 chr2 153575564 153575671 + 5.88940 NA intron (NM_152522, intron 1 of 3) intron (NM_152522, intron 1 of 3) 1210 NR_024526 151188 Hs.643580 NM_152522 HPRD:12485 ARL6IP6 AIP-6|PFAAP1 ADP-ribosylation factor-like 6 interacting protein 6 protein-coding 13-PTNLD9-TUMOR_peak_4298 chr1 167191460 167191588 + 5.88931 NA intron (NM_001198786, intron 1 of 14) intron (NM_001198786, intron 1 of 14) 1401 NR_037163 5451 Hs.283402 NM_002697 HPRD:01250 POU2F1 OCT1|OTF1|oct-1B POU class 2 homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_7618 chr10 71629076 71629333 + 5.87883 NA intron (NM_080798, intron 3 of 34) intron (NM_080798, intron 3 of 34) 67560 NM_080805 1305 Hs.695934 NM_005203 HPRD:00383 COL13A1 COLXIIIA1 collagen, type XIII, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_18137 chr16 284708 284931 + 5.87883 NA non-coding (NR_104317, exon 1 of 14) non-coding (NR_104317, exon 1 of 14) 274 NM_001284497 83986 Hs.513225 NM_032039 HPRD:12677 ITFG3 C16orf9|gs19 integrin alpha FG-GAP repeat containing 3 protein-coding 13-PTNLD9-TUMOR_peak_12706 chr12 49350288 49350390 + 5.87883 NA intron (NM_001659, intron 1 of 4) intron (NM_001659, intron 1 of 4) 913 NM_001659 377 Hs.119177 NM_001659 HPRD:00056 ARF3 - ADP-ribosylation factor 3 protein-coding 13-PTNLD9-TUMOR_peak_10079 chr11 62439095 62439227 + 5.87883 NA promoter-TSS (NM_001085372) promoter-TSS (NM_001085372) 35 NM_001085372 790955 Hs.569009 NM_001085372 ENSG00000204922 UQCC3 C11orf83|CCDS41658.1|UNQ655 ubiquinol-cytochrome c reductase complex assembly factor 3 protein-coding 13-PTNLD9-TUMOR_peak_22076 chr17 74581916 74582356 + 5.87883 NA promoter-TSS (NM_006456) promoter-TSS (NM_006456) 9 NM_006456 10610 Hs.592105 NM_006456 HPRD:10231 ST6GALNAC2 SAITL1|SIAT7|SIAT7B|SIATL1|ST6GalNAII|STHM ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2 protein-coding 13-PTNLD9-TUMOR_peak_30776 chr20 31262345 31262485 + 5.87883 NA Intergenic Intergenic -22632 NM_182584 284805 Hs.353262 NM_182584 C20orf203 - chromosome 20 open reading frame 203 protein-coding 13-PTNLD9-TUMOR_peak_20758 chr17 26926674 26926785 + 5.87883 NA promoter-TSS (NM_006461) promoter-TSS (NM_006461) 578 NR_040012 100506436 Hs.743630 NR_040012 SPAG5-AS1 - SPAG5 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_51071 chr8 67344590 67344794 + 5.87780 NA promoter-TSS (NM_144650) promoter-TSS (NM_144650) -26 NM_144650 137872 Hs.720023 NM_144650 HPRD:12428 ADHFE1 ADH8|HOT alcohol dehydrogenase, iron containing, 1 protein-coding 13-PTNLD9-TUMOR_peak_18827 chr16 24865297 24865518 + 5.87731 NA intron (NM_001258413, intron 2 of 15) intron (NM_001258413, intron 2 of 15) 7855 NM_052944 115584 Hs.164118 NM_052944 ENSG00000158865 SLC5A11 KST1|RKST1|SGLT6|SMIT2 solute carrier family 5 (sodium/inositol cotransporter), member 11 protein-coding 13-PTNLD9-TUMOR_peak_16919 chr15 30864909 30865015 + 5.87438 NA intron (NR_026858, intron 1 of 4) CpG 204 NR_026858 89838 Hs.574255 NR_026858 ENSG00000261279 ULK4P1 D-X|FAM7A1 ULK4 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_14350 chr12 133007055 133007154 + 5.87016 NA Intergenic Intergenic -60053 NM_001142641 57666 Hs.411138 NM_001142641 ENSG00000112787 FBRSL1 - fibrosin-like 1 protein-coding 13-PTNLD9-TUMOR_peak_37893 chr4 8483961 8484055 + 5.87016 NA Intergenic Tigger3|DNA|TcMar-Tigger 41476 NM_152544 152992 Hs.566191 NM_024950 HPRD:08760 TRMT44 C4orf23|METTL19|TRM44 tRNA methyltransferase 44 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_40137 chr5 308935 309107 + 5.87016 NA intron (NM_001267558, intron 5 of 6) intron (NM_001267558, intron 5 of 6) 4730 NM_001242412 57491 Hs.50823 NM_020731 HPRD:07356 AHRR AHH|AHHR|bHLHe77 aryl-hydrocarbon receptor repressor protein-coding 13-PTNLD9-TUMOR_peak_55830 chrX 48769249 48769343 + 5.87016 NA promoter-TSS (NM_001282648) promoter-TSS (NM_001282648) -61 NM_005660 7355 Hs.21899 NM_005660 HPRD:02441 SLC35A2 CDG2M|CDGX|UDP-Gal-Tr|UGALT|UGAT|UGT|UGT1|UGT2|UGTL solute carrier family 35 (UDP-galactose transporter), member A2 protein-coding 13-PTNLD9-TUMOR_peak_52742 chr9 9931678 9931772 + 5.87016 NA intron (NM_002839, intron 5 of 45) L1PA3|LINE|L1 680998 NM_002839 5789 Hs.446083 NM_002839 HPRD:03358 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase, receptor type, D protein-coding 13-PTNLD9-TUMOR_peak_45748 chr6 93248138 93248368 + 5.87016 NA Intergenic Intergenic -848107 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility candidate 6 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_28919 chr2 162762313 162762587 + 5.87016 NA intron (NM_001178015, intron 15 of 26) intron (NM_001178015, intron 15 of 26) 168602 NM_001935 1803 Hs.368912 NM_001935 HPRD:02187 DPP4 ADABP|ADCP2|CD26|DPPIV|TP103 dipeptidyl-peptidase 4 protein-coding 13-PTNLD9-TUMOR_peak_26715 chr2 43337685 43337944 + 5.87016 NA Intergenic L4|LINE|RTE -71132 NR_110585 102723854 Hs.570165 NR_110585 LOC102723854 - uncharacterized LOC102723854 ncRNA 13-PTNLD9-TUMOR_peak_20970 chr17 37370260 37370354 + 5.87016 NA intron (NM_198993, intron 8 of 10) intron (NM_198993, intron 8 of 10) 11733 NM_198993 342667 Hs.145068 NM_198993 HPRD:18113 STAC2 24b2|24b2/STAC2 SH3 and cysteine rich domain 2 protein-coding 13-PTNLD9-TUMOR_peak_40375 chr5 14190524 14190724 + 5.87016 NA intron (NM_007118, intron 1 of 56) intron (NM_007118, intron 1 of 56) 46795 NM_007118 7204 Hs.130031 NM_007118 HPRD:03537 TRIO ARHGEF23|tgat trio Rho guanine nucleotide exchange factor protein-coding 13-PTNLD9-TUMOR_peak_19266 chr16 48087399 48087514 + 5.87016 NA Intergenic Intergenic 93225 NM_033226 94160 Hs.410111 NM_033226 HPRD:06128 ABCC12 MRP9 ATP-binding cassette, sub-family C (CFTR/MRP), member 12 protein-coding 13-PTNLD9-TUMOR_peak_30637 chr20 24469279 24469456 + 5.87016 NA intron (NM_024893, intron 1 of 3) intron (NM_024893, intron 1 of 3) 19532 NM_024893 79953 Hs.124638 NM_024893 HPRD:12766 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 13-PTNLD9-TUMOR_peak_11722 chr11 133870066 133870464 + 5.87016 NA Intergenic MER81|DNA|hAT-Blackjack -31902 NR_027276 100128239 Hs.423734 NR_027276 ENSG00000204241 LOC100128239 - uncharacterized LOC100128239 ncRNA 13-PTNLD9-TUMOR_peak_54215 chr9 101947277 101947380 + 5.87016 NA Intergenic Intergenic 36918 NM_033087 85365 Hs.40919 NM_033087 ALG2 CDGIi|NET38|hALPG2 ALG2, alpha-1,3/1,6-mannosyltransferase protein-coding 13-PTNLD9-TUMOR_peak_16852 chr15 27668360 27668460 + 5.87016 NA intron (NM_033223, intron 5 of 9) MER68|LTR|ERVL -261944 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 LOC101928869 - uncharacterized LOC101928869 ncRNA 13-PTNLD9-TUMOR_peak_18508 chr16 11110915 11111080 + 5.87016 NA intron (NM_015226, intron 10 of 22) intron (NM_015226, intron 10 of 22) 72652 NM_001243403 23274 Hs.35490 NM_015226 HPRD:17185 CLEC16A Gop-1|KIAA0350 C-type lectin domain family 16, member A protein-coding 13-PTNLD9-TUMOR_peak_50309 chr8 22613848 22613961 + 5.87016 NA intron (NM_144962, intron 4 of 6) intron (NM_144962, intron 4 of 6) -63089 NM_004430 1960 Hs.534313 NM_004430 HPRD:03881 EGR3 EGR-3|PILOT early growth response 3 protein-coding 13-PTNLD9-TUMOR_peak_28879 chr2 161037704 161037932 + 5.87016 NA intron (NM_001282390, intron 3 of 13) L1PA7|LINE|L1 19006 NM_001282389 3694 Hs.470399 NM_000888 HPRD:00947 ITGB6 - integrin, beta 6 protein-coding 13-PTNLD9-TUMOR_peak_27108 chr2 65679766 65679907 + 5.87016 NA Intergenic LTR33|LTR|ERVL -20180 NM_181784 200734 Hs.59332 NM_181784 HPRD:18100 SPRED2 Spred-2 sprouty-related, EVH1 domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_52711 chr9 6757076 6757203 + 5.87014 NA promoter-TSS (NM_001146694) promoter-TSS (NM_001146694) -502 NM_001146695 23081 Hs.709425 NM_015061 HPRD:12016 KDM4C GASC1|JHDM3C|JMJD2C|TDRD14C|bA146B14.1 lysine (K)-specific demethylase 4C protein-coding 13-PTNLD9-TUMOR_peak_2049 chr1 64129037 64129321 + 5.87014 NA Intergenic L2b|LINE|L2 40292 NM_001172818 5236 Hs.1869 NM_002633 HPRD:01389 PGM1 CDG1T|GSD14 phosphoglucomutase 1 protein-coding 13-PTNLD9-TUMOR_peak_142 chr1 2480204 2480407 + 5.87014 NA Intergenic Intergenic -7499 NM_001297605 8764 Hs.512898 NM_003820 HPRD:04122 TNFRSF14 ATAR|CD270|HVEA|HVEM|LIGHTR|TR2 tumor necrosis factor receptor superfamily, member 14 protein-coding 13-PTNLD9-TUMOR_peak_22155 chr17 76313605 76313705 + 5.86872 NA Intergenic Intergenic -39082 NR_073178 100996291 Hs.744493 NR_073178 ENSG00000204277 LOC100996291 - uncharacterized LOC100996291 ncRNA 13-PTNLD9-TUMOR_peak_46784 chr7 5534376 5534572 + 5.86872 NA TTS (NR_030318) TTS (NR_030318) 1074 NR_030318 693174 NR_030318 MIR589 MIRN589|hsa-mir-589 microRNA 589 ncRNA 13-PTNLD9-TUMOR_peak_10655 chr11 75269319 75269413 + 5.86872 NA Intergenic Intergenic -3735 NM_001207014 871 Hs.596449 NM_001235 HPRD:02968 SERPINH1 AsTP3|CBP1|CBP2|HSP47|OI10|PPROM|RA-A47|SERPINH2|gp46 serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1) protein-coding 13-PTNLD9-TUMOR_peak_29634 chr2 206550090 206550235 + 5.86872 NA intron (NM_003872, intron 1 of 16) CpG 2938 NM_201264 8828 Hs.471200 NM_003872 HPRD:03643 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 13-PTNLD9-TUMOR_peak_7281 chr10 48277798 48277986 + 5.86138 NA Intergenic CpG 22688 NM_001040084 653145 Hs.535306 NM_001040084 ENSG00000165390 ANXA8 ANX8 annexin A8 protein-coding 13-PTNLD9-TUMOR_peak_565 chr1 17454992 17455164 + 5.85919 NA Intergenic LTR24B|LTR|ERV1 -9130 NM_007365 11240 Hs.33455 NM_007365 HPRD:06396 PADI2 PAD-H19|PAD2|PDI2 peptidyl arginine deiminase, type II protein-coding 13-PTNLD9-TUMOR_peak_29650 chr2 206854170 206854279 + 5.85919 NA Intergenic Intergenic 96682 NM_017759 54891 Hs.445036 NM_017759 HPRD:07894 INO80D - INO80 complex subunit D protein-coding 13-PTNLD9-TUMOR_peak_17594 chr15 72082475 72082645 + 5.85919 NA Intergenic Intergenic -20328 NM_014249 10002 Hs.187354 NM_014249 NR2E3 ESCS|PNR|RNR|RP37|rd7 nuclear receptor subfamily 2, group E, member 3 protein-coding 13-PTNLD9-TUMOR_peak_48827 chr7 111086178 111086333 + 5.85919 NA intron (NM_032549, intron 3 of 5) L1PA2|LINE|L1 116092 NM_032549 83943 Hs.655722 NM_032549 HPRD:07297 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_54665 chr9 124262007 124262101 + 5.85919 NA non-coding (NR_003191, exon 1 of 7) non-coding (NR_003191, exon 1 of 7) 252 NR_045211 2681 Hs.97469 NR_003191 ENSG00000204136 GGTA1P GGTA|GGTA1|GLYT2|a1/3GTP glycoprotein, alpha-galactosyltransferase 1 pseudogene pseudo 13-PTNLD9-TUMOR_peak_15684 chr14 50086976 50087081 + 5.85738 NA promoter-TSS (NM_002408) promoter-TSS (NM_002408) 375 NM_001001 6166 Hs.444749 NM_001001 RPL36AL RPL36A ribosomal protein L36a-like protein-coding 13-PTNLD9-TUMOR_peak_12992 chr12 56551591 56551723 + 5.85501 NA promoter-TSS (NM_021019) promoter-TSS (NM_021019) -388 NM_021019 4637 Hs.632717 NM_021019 HPRD:17618 MYL6 ESMLC|LC17|LC17-GI|LC17-NM|LC17A|LC17B|MLC-3|MLC1SM|MLC3NM|MLC3SM myosin, light chain 6, alkali, smooth muscle and non-muscle protein-coding 13-PTNLD9-TUMOR_peak_19358 chr16 53810126 53810223 + 5.85389 NA intron (NM_001080432, intron 1 of 8) intron (NM_001080432, intron 1 of 8) 72299 NM_001080432 79068 Hs.528833 NM_001080432 FTO ALKBH9 fat mass and obesity associated protein-coding 13-PTNLD9-TUMOR_peak_20755 chr17 26798517 26798739 + 5.85389 NA Intergenic Intergenic -2036 NM_003984 9058 Hs.102307 NM_003984 HPRD:09164 SLC13A2 NADC1|NaCT|NaDC-1|SDCT1 solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2 protein-coding 13-PTNLD9-TUMOR_peak_10777 chr11 80669657 80669751 + 5.85389 NA Intergenic Intergenic -195858 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LOC101928944 - uncharacterized LOC101928944 ncRNA 13-PTNLD9-TUMOR_peak_13755 chr12 109043614 109043775 + 5.85389 NA intron (NM_001105237, intron 8 of 10) intron (NM_001105237, intron 8 of 10) -16024 NM_003006 6404 Hs.591014 NM_003006 HPRD:02845 SELPLG CD162|CLA|PSGL-1|PSGL1 selectin P ligand protein-coding 13-PTNLD9-TUMOR_peak_38222 chr4 40397954 40398057 + 5.85389 NA Intergenic Intergenic 60659 NM_017581 55584 Hs.272278 NM_017581 HPRD:16092 CHRNA9 HSA243342|NACHRA9 cholinergic receptor, nicotinic, alpha 9 (neuronal) protein-coding 13-PTNLD9-TUMOR_peak_54527 chr9 117068102 117068331 + 5.85389 NA intron (NM_032888, intron 57 of 60) intron (NM_032888, intron 57 of 60) -17087 NM_000607 5004 Hs.522356 NM_000607 HPRD:00724 ORM1 AGP-A|AGP1|HEL-S-153w|ORM orosomucoid 1 protein-coding 13-PTNLD9-TUMOR_peak_45587 chr6 81317568 81317750 + 5.85389 NA Intergenic LTR88c|LTR|Gypsy? 501315 NM_183050 594 Hs.654441 NM_000056 HPRD:02011 BCKDHB E1B|dJ279A18.1 branched chain keto acid dehydrogenase E1, beta polypeptide protein-coding 13-PTNLD9-TUMOR_peak_8877 chr11 3964511 3964743 + 5.85389 NA intron (NM_001277962, intron 1 of 12) intron (NM_001277962, intron 1 of 12) 87335 NR_039835 100616453 NR_039835 miRBase:MI0017319 MIR4687 - microRNA 4687 ncRNA 13-PTNLD9-TUMOR_peak_43823 chr6 12573602 12573715 + 5.85389 NA Intergenic Intergenic -143379 NM_001242648 221692 Hs.436996 NM_030948 PHACTR1 RPEL|RPEL1|dJ257A7.2 phosphatase and actin regulator 1 protein-coding 13-PTNLD9-TUMOR_peak_35129 chr3 95642454 95642661 + 5.85389 NA Intergenic MER41B|LTR|ERV1 -240520 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_29897 chr2 223182839 223183042 + 5.85389 NA Intergenic Intergenic -19225 NM_181461 5077 Hs.42146 NM_000438 HPRD:09421 PAX3 CDHS|HUP2|WS1|WS3 paired box 3 protein-coding 13-PTNLD9-TUMOR_peak_50499 chr8 29371038 29371134 + 5.85389 NA Intergenic Intergenic -162819 NM_001394 1846 Hs.417962 NM_001394 HPRD:04123 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 13-PTNLD9-TUMOR_peak_6275 chr10 1578698 1578796 + 5.85389 NA intron (NR_033387, intron 1 of 1) intron (NR_033387, intron 1 of 1) 9922 NR_033387 642394 Hs.568831 NM_001098830 ENSG00000205696 ADARB2-AS1 C10orf109|NCRNA00168|bA466B20.1 ADARB2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_28840 chr2 159359697 159359828 + 5.85389 NA intron (NM_001005476, intron 1 of 20) intron (NM_001005476, intron 1 of 20) 46286 NM_001005476 8502 Hs.407580 NM_003628 HPRD:05043 PKP4 p0071 plakophilin 4 protein-coding 13-PTNLD9-TUMOR_peak_56642 chrX 152084130 152084240 + 5.85389 NA intron (NM_001178106, intron 3 of 23) intron (NM_001178106, intron 3 of 23) 1199 NM_001178109 7739 Hs.16622 NM_007150 HPRD:02306 ZNF185 - zinc finger protein 185 (LIM domain) protein-coding 13-PTNLD9-TUMOR_peak_5591 chr1 224713101 224713253 + 5.85389 NA Intergenic Intergenic -91002 NM_152495 149111 Hs.731723 NM_152495 HPRD:08799 CNIH3 CNIH-3 cornichon family AMPA receptor auxiliary protein 3 protein-coding 13-PTNLD9-TUMOR_peak_46585 chr6 170190389 170190500 + 5.85389 NA non-coding (NR_026781, exon 2 of 2) non-coding (NR_026781, exon 2 of 2) 275 NR_026780 80069 Hs.677182 NM_025002 HPRD:12876 LINC00574 C6orf208|dJ182D15.1 long intergenic non-protein coding RNA 574 ncRNA 13-PTNLD9-TUMOR_peak_30090 chr2 236476560 236476712 + 5.85389 NA intron (NM_001037131, intron 1 of 17) intron (NM_001037131, intron 1 of 17) 73903 NM_001244888 116987 Hs.435039 NM_014914 HPRD:16359 AGAP1 AGAP-1|CENTG2|GGAP1|cnt-g2 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 protein-coding 13-PTNLD9-TUMOR_peak_14736 chr13 48669181 48669385 + 5.85389 NA promoter-TSS (NM_014166) promoter-TSS (NM_014166) -6 NM_001270629 29079 Hs.181112 NM_014166 HPRD:16145 MED4 ARC36|DRIP36|HSPC126|TRAP36|VDRIP mediator complex subunit 4 protein-coding 13-PTNLD9-TUMOR_peak_19824 chr16 78804529 78804676 + 5.85389 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 671292 NR_120435 51741 Hs.461453 NM_016373 HPRD:05501 WWOX D16S432E|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 13-PTNLD9-TUMOR_peak_12984 chr12 56472840 56472943 + 5.85269 NA promoter-TSS (NM_001982) promoter-TSS (NM_001982) -918 NM_001982 2065 Hs.118681 NM_001982 HPRD:01820 ERBB3 ErbB-3|HER3|LCCS2|MDA-BF-1|c-erbB-3|c-erbB3|erbB3-S|p180-ErbB3|p45-sErbB3|p85-sErbB3 v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 3 protein-coding 13-PTNLD9-TUMOR_peak_12043 chr12 7260851 7260981 + 5.85269 NA promoter-TSS (NR_026947) promoter-TSS (NR_026947) 12 NR_026947 283314 Hs.744212 NR_026947 ENSG00000205885 C1RL-AS1 MATL2963 C1RL antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_16102 chr14 68931594 68931740 + 5.85269 NA intron (NM_133510, intron 9 of 10) intron (NM_133510, intron 9 of 10) 328964 NM_004926 677 Hs.85155 NM_004926 HPRD:03041 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein-like 1 protein-coding 13-PTNLD9-TUMOR_peak_50001 chr8 7212640 7212959 + 5.85269 NA promoter-TSS (NR_027423) promoter-TSS (NR_027423) 77 NR_027423 100128890 Hs.694680 NR_027423 ENSG00000215374 FAM66B FAM66E family with sequence similarity 66, member B ncRNA 13-PTNLD9-TUMOR_peak_7280 chr10 48277315 48277504 + 5.84795 NA Intergenic Intergenic 22205 NM_001040084 653145 Hs.535306 NM_001040084 ENSG00000165390 ANXA8 ANX8 annexin A8 protein-coding 13-PTNLD9-TUMOR_peak_21975 chr17 73155681 73155775 + 5.84459 NA Intergenic AluJr|SINE|Alu -4950 NM_001288611 51155 Hs.532803 NM_016185 HPRD:13665 HN1 ARM2|HN1A hematological and neurological expressed 1 protein-coding 13-PTNLD9-TUMOR_peak_4282 chr1 166875257 166875378 + 5.84459 NA Intergenic Intergenic -29663 NM_053053 117143 Hs.435967 NM_053053 HPRD:18114 TADA1 ADA1|HFI1|STAF42|TADA1L|hADA1 transcriptional adaptor 1 protein-coding 13-PTNLD9-TUMOR_peak_53251 chr9 39942119 39942227 + 5.84459 NA Intergenic Intergenic 41827 NR_026803 401507 Hs.553802 NM_001012278 HPRD:17394 FAM74A1 FAM74A5 family with sequence similarity 74, member A1 ncRNA 13-PTNLD9-TUMOR_peak_56668 chrX 152728520 152728729 + 5.84459 NA intron (NR_073156, intron 3 of 12) intron (NR_073156, intron 3 of 12) 7465 NM_017518 55559 Hs.170835 NM_017518 HPRD:18695 HAUS7 UCHL5IP|UIP1 HAUS augmin-like complex, subunit 7 protein-coding 13-PTNLD9-TUMOR_peak_1455 chr1 43768492 43768859 + 5.84459 NA intron (NM_001253357, intron 1 of 22) MIRb|SINE|MIR 2109 NM_005424 7075 Hs.78824 NM_005424 HPRD:02572 TIE1 JTK14|TIE tyrosine kinase with immunoglobulin-like and EGF-like domains 1 protein-coding 13-PTNLD9-TUMOR_peak_46 chr1 911542 911713 + 5.84459 NA exon (NM_001291367, exon 5 of 5) exon (NM_001291367, exon 5 of 5) 5870 NM_001291366 84808 Hs.271462 NM_032722 ENSG00000187642 PERM1 C1orf170 PPARGC1 and ESRR induced regulator, muscle 1 protein-coding 13-PTNLD9-TUMOR_peak_50458 chr8 28115089 28115271 + 5.83701 NA Intergenic Intergenic -59469 NM_006228 5368 Hs.88218 NM_006228 HPRD:03268 PNOC PPNOC prepronociceptin protein-coding 13-PTNLD9-TUMOR_peak_37496 chr3 197634635 197634864 + 5.83701 NA intron (NM_032263, intron 9 of 11) intron (NM_032263, intron 9 of 11) 42047 NM_001134435 84223 Hs.591675 NM_032263 HPRD:13746 IQCG CFAP122|DRC9 IQ motif containing G protein-coding 13-PTNLD9-TUMOR_peak_54850 chr9 131124540 131124634 + 5.83658 NA TTS (NM_005094) TTS (NM_005094) -9011 NM_030914 81605 Hs.495229 NM_030914 URM1 C9orf74 ubiquitin related modifier 1 protein-coding 13-PTNLD9-TUMOR_peak_13590 chr12 101801261 101801530 + 5.83658 NA intron (NM_001177, intron 1 of 5) CpG 203 NM_001177 400 Hs.372616 NM_001177 HPRD:04574 ARL1 ARFL1 ADP-ribosylation factor-like 1 protein-coding 13-PTNLD9-TUMOR_peak_23084 chr18 45280837 45281129 + 5.83658 NA Intergenic Intergenic 175987 NM_005901 4087 Hs.12253 NM_005901 HPRD:03221 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding 13-PTNLD9-TUMOR_peak_25542 chr19 52839403 52839534 + 5.83658 NA promoter-TSS (NM_001161425) promoter-TSS (NM_001161425) -30 NM_001161427 162963 Hs.147025 NM_173530 HPRD:11735 ZNF610 - zinc finger protein 610 protein-coding 13-PTNLD9-TUMOR_peak_15296 chr14 23067871 23067972 + 5.83658 NA intron (NM_022060, intron 1 of 6) intron (NM_022060, intron 1 of 6) 774 NM_022060 63874 Hs.445665 NM_022060 HPRD:12406 ABHD4 ABH4 abhydrolase domain containing 4 protein-coding 13-PTNLD9-TUMOR_peak_23928 chr19 10426187 10426392 + 5.83658 NA TTS (NM_133452) TTS (NM_133452) 402 NM_001031734 112812 Hs.654865 NM_080665 HPRD:14465 FDX1L FDX2 ferredoxin 1-like protein-coding 13-PTNLD9-TUMOR_peak_22412 chr18 812755 812904 + 5.83658 NA promoter-TSS (NM_005433) promoter-TSS (NM_005433) -502 NM_005433 7525 Hs.194148 NM_005433 HPRD:01285 YES1 HsT441|P61-YES|Yes|c-yes YES proto-oncogene 1, Src family tyrosine kinase protein-coding 13-PTNLD9-TUMOR_peak_15981 chr14 62393942 62394036 + 5.83658 NA Intergenic Intergenic -68552 NM_031914 83851 Hs.404139 NM_031914 HPRD:15461 SYT16 CHR14SYT|SYT14L|Strep14|syt14r|yt14r synaptotagmin XVI protein-coding 13-PTNLD9-TUMOR_peak_32085 chr21 30554523 30554739 + 5.83658 NA Intergenic Intergenic -11184 NR_027072 193629 Hs.720711 NM_138968 ENSG00000215533 LINC00189 C21orf109|NCRNA00189 long intergenic non-protein coding RNA 189 ncRNA 13-PTNLD9-TUMOR_peak_22564 chr18 9870065 9870161 + 5.83658 NA Intergenic Intergenic -15610 NM_032243 84203 Hs.98712 NM_032243 HPRD:11654 TXNDC2 SPTRX|SPTRX1 thioredoxin domain containing 2 (spermatozoa) protein-coding 13-PTNLD9-TUMOR_peak_46137 chr6 138408818 138408918 + 5.83658 NA TTS (NM_022121) TTS (NM_022121) 19792 NM_022121 64065 Hs.201446 NM_022121 HPRD:17836 PERP KCP1|KRTCAP1|PIGPC1|THW|dJ496H19.1 PERP, TP53 apoptosis effector protein-coding 13-PTNLD9-TUMOR_peak_9423 chr11 32195131 32195257 + 5.83658 NA Intergenic Intergenic 82717 NM_002901 5954 Hs.97887 NM_002901 HPRD:04111 RCN1 HEL-S-84|PIG20|RCAL|RCN reticulocalbin 1, EF-hand calcium binding domain protein-coding 13-PTNLD9-TUMOR_peak_55887 chrX 53117887 53118042 + 5.83658 NA TTS (NM_022117) TTS (NM_022117) -5375 NR_110456 102723508 Hs.633244 NR_110456 KANTR LINC01155|Spasm KDM5C adjacent non-coding transcript ncRNA 13-PTNLD9-TUMOR_peak_31042 chr20 38945746 38946196 + 5.83658 NA Intergenic Intergenic 312868 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 - long intergenic non-protein coding RNA 1370 ncRNA 13-PTNLD9-TUMOR_peak_45499 chr6 73972907 73973152 + 5.83658 NA promoter-TSS (NM_030568) promoter-TSS (NM_030568) -122 NM_030568 80759 Hs.433062 NM_030568 HPRD:10790 KHDC1 C6orf148|NDG1|bA257K9.4 KH homology domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_36858 chr3 178495628 178495770 + 5.83658 NA intron (NM_001278911, intron 1 of 4) intron (NM_001278911, intron 1 of 4) 219211 NM_001278911 10242 Hs.478368 NM_005832 HPRD:05557 KCNMB2 - potassium large conductance calcium-activated channel, subfamily M, beta member 2 protein-coding 13-PTNLD9-TUMOR_peak_23289 chr18 55956846 55956945 + 5.83658 NA intron (NM_001243960, intron 5 of 28) intron (NM_001243960, intron 5 of 28) 68141 NM_001144966 23327 Hs.185677 NM_015277 HPRD:05903 NEDD4L NEDD4-2|NEDD4.2|RSP5|hNEDD4-2 neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_48215 chr7 86846177 86846334 + 5.83655 NA intron (NM_024315, intron 1 of 3) MIRb|SINE|MIR 2776 NM_024315 79161 Hs.619593 NM_024315 HPRD:12911 TMEM243 C7orf23|MM-TRAG transmembrane protein 243, mitochondrial protein-coding 13-PTNLD9-TUMOR_peak_35949 chr3 132136767 132136900 + 5.83335 NA intron (NM_015268, intron 1 of 55) intron (NM_015268, intron 1 of 55) 280 NM_015268 23317 Hs.12707 NM_015268 HPRD:10915 DNAJC13 RME8 DnaJ (Hsp40) homolog, subfamily C, member 13 protein-coding 13-PTNLD9-TUMOR_peak_31503 chr20 50383043 50383179 + 5.83335 NA intron (NM_006045, intron 1 of 27) AluSg7|SINE|Alu 1797 NM_006045 10079 Hs.649234 NM_006045 HPRD:18541 ATP9A ATPIIA ATPase, class II, type 9A protein-coding 13-PTNLD9-TUMOR_peak_31693 chr20 56534180 56534282 + 5.82984 NA Intergenic Intergenic 63781 NR_039757 100616353 NR_039757 miRBase:MI0016899 MIR4532 - microRNA 4532 ncRNA 13-PTNLD9-TUMOR_peak_28029 chr2 111213055 111213172 + 5.82984 NA non-coding (NR_027145, exon 4 of 18) non-coding (NR_027145, exon 4 of 18) 17539 NR_027467 96626 Hs.535619 NM_033514 HPRD:17277 LIMS3 PINCH-3 LIM and senescent cell antigen-like domains 3 protein-coding 13-PTNLD9-TUMOR_peak_36673 chr3 169755888 169756103 + 5.82984 NA 5' UTR (NM_014373, exon 1 of 4) 5' UTR (NM_014373, exon 1 of 4) 260 NM_014373 26996 Hs.231320 NM_014373 HPRD:17069 GPR160 GPCR1|GPCR150 G protein-coupled receptor 160 protein-coding 13-PTNLD9-TUMOR_peak_40937 chr5 56299426 56299569 + 5.82984 NA Intergenic L1PB1|LINE|L1 -51540 NM_152622 166968 Hs.657594 NM_152622 HPRD:08199 MIER3 - mesoderm induction early response 1, family member 3 protein-coding 13-PTNLD9-TUMOR_peak_30544 chr20 19193503 19193654 + 5.82984 NA exon (NM_020689, exon 1 of 17) exon (NM_020689, exon 1 of 17) 288 NM_020689 57419 Hs.654790 NM_020689 HPRD:15352 SLC24A3 NCKX3 solute carrier family 24 (sodium/potassium/calcium exchanger), member 3 protein-coding 13-PTNLD9-TUMOR_peak_19286 chr16 49525739 49525934 + 5.82984 NA intron (NM_015069, intron 7 of 7) intron (NM_015069, intron 7 of 7) 118028 NM_144602 123970 Hs.125875 NM_144602 HPRD:14560 C16orf78 - chromosome 16 open reading frame 78 protein-coding 13-PTNLD9-TUMOR_peak_3340 chr1 145929708 145929802 + 5.82984 NA intron (NR_111936, intron 7 of 9).2 L3|LINE|CR1 15722 NR_111936 100034743 Hs.696575 NR_003377 ENSG00000215860 PDZK1P2 OTTHUMT00000038524|PDZK1P1 PDZ domain containing 1 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_22655 chr18 13216226 13216359 + 5.82984 NA Intergenic Intergenic -2437 NM_181482 753 Hs.731853 NM_004338 HPRD:07358 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 13-PTNLD9-TUMOR_peak_54524 chr9 116994862 116995016 + 5.82984 NA intron (NM_032888, intron 16 of 60) intron (NM_032888, intron 16 of 60) 23225 NR_030255 619556 NR_030255 MIR455 MIRN455|hsa-mir-455 microRNA 455 ncRNA 13-PTNLD9-TUMOR_peak_53566 chr9 72121429 72121576 + 5.82984 NA intron (NM_001163, intron 2 of 12) L1PA2|LINE|L1 165773 NM_001163 320 Hs.171939 NM_001163 HPRD:03879 APBA1 D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA amyloid beta (A4) precursor protein-binding, family A, member 1 protein-coding 13-PTNLD9-TUMOR_peak_9942 chr11 59333686 59333878 + 5.82984 NA Intergenic Intergenic 28849 NR_036120 100422880 NR_036120 MIR3162 - microRNA 3162 ncRNA 13-PTNLD9-TUMOR_peak_29594 chr2 204448565 204448766 + 5.82984 NA Intergenic Intergenic -48607 NM_203365 65059 Hs.471162 NM_025252 HPRD:12356 RAPH1 ALS2CR18|ALS2CR9|LPD|PREL-2|PREL2|RMO1|RalGDS/AF-6 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 protein-coding 13-PTNLD9-TUMOR_peak_23822 chr19 7982822 7982938 + 5.82978 NA intron (NM_001195259, intron 4 of 5) CpG-12794 1848 NM_001195259 100507588 Hs.646773 NM_001195259 ENSG00000260001 TGFBR3L TGFR-3L transforming growth factor, beta receptor III-like protein-coding 13-PTNLD9-TUMOR_peak_49190 chr7 134278674 134278772 + 5.82594 NA Intergenic Intergenic 44874 NM_001080538 441282 Hs.729418 NM_001080538 ENSG00000227471 AKR1B15 AKR1B10L, AK1R1B7 aldo-keto reductase family 1, member B15 protein-coding 13-PTNLD9-TUMOR_peak_42641 chr5 149897126 149897662 + 5.82594 NA intron (NM_001543, intron 1 of 14) intron (NM_001543, intron 1 of 14) 9720 NM_001543 3340 Hs.222055 NM_001543 HPRD:02912 NDST1 HSST|NST1 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1 protein-coding 13-PTNLD9-TUMOR_peak_31428 chr20 48903471 48903582 + 5.82594 NA Intergenic Intergenic -5731 NR_034124 284751 Hs.282325 NM_001025463 HPRD:18771 LINC01270 - long intergenic non-protein coding RNA 1270 ncRNA 13-PTNLD9-TUMOR_peak_50743 chr8 42129257 42129351 + 5.82594 NA intron (NM_001190720, intron 1 of 20) intron (NM_001190720, intron 1 of 20) 484 NR_033819 3551 Hs.597664 NM_001556 HPRD:04462 IKBKB IKK-beta|IKK2|IKKB|IMD15|NFKBIKB inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta protein-coding 13-PTNLD9-TUMOR_peak_31430 chr20 48925427 48925521 + 5.82594 NA intron (NR_034124, intron 2 of 4) intron (NR_034124, intron 2 of 4) 12405 NR_109950 101927586 Hs.637665 NR_109950 ENSG00000233077 LINC01271 - long intergenic non-protein coding RNA 1271 ncRNA 13-PTNLD9-TUMOR_peak_47487 chr7 50967033 50967148 + 5.82594 NA Intergenic L1PA2|LINE|L1 -105931 NM_001001555 2887 Hs.164060 NM_005311 HPRD:03312 GRB10 GRB-IR|Grb-10|IRBP|MEG1|RSS growth factor receptor-bound protein 10 protein-coding 13-PTNLD9-TUMOR_peak_43509 chr6 3157762 3157963 + 5.82048 NA promoter-TSS (NM_001069) promoter-TSS (NM_001069) -79 NM_001069 7280 Hs.654543 NM_001069 HPRD:01852 TUBB2A CDCBM5|TUBB|TUBB2|dJ40E16.7 tubulin, beta 2A class IIa protein-coding 13-PTNLD9-TUMOR_peak_17505 chr15 68132282 68132416 + 5.82048 NA promoter-TSS (NR_125730).5 promoter-TSS (NR_125730).5 34 NR_125730 103625684 NR_125730 RNU6-2 U6-2 RNA, U6 small nuclear 2 snRNA 13-PTNLD9-TUMOR_peak_25710 chr19 56093266 56093384 + 5.82048 NA Intergenic L1MC4a|LINE|L1 -1114 NM_152600 163033 Hs.112529 NM_152600 HPRD:11730 ZNF579 - zinc finger protein 579 protein-coding 13-PTNLD9-TUMOR_peak_14114 chr12 122237488 122237587 + 5.82006 NA intron (NR_002809, intron 5 of 6) intron (NR_002809, intron 5 of 6) 3853 NR_002809 338799 Hs.524804 NR_002809 ENSG00000212694 LINC01089 - long intergenic non-protein coding RNA 1089 ncRNA 13-PTNLD9-TUMOR_peak_11653 chr11 130048429 130048615 + 5.81888 NA intron (NM_021978, intron 1 of 18) intron (NM_021978, intron 1 of 18) 18840 NM_021978 6768 Hs.504315 NM_021978 HPRD:06005 ST14 ARCI11|HAI|MT-SP1|MTSP1|PRSS14|SNC19|TADG15|TMPRSS14 suppression of tumorigenicity 14 (colon carcinoma) protein-coding 13-PTNLD9-TUMOR_peak_22271 chr17 79486483 79486739 + 5.81888 NA Intergenic CpG -6719 NM_001199954 71 Hs.514581 NM_001614 HPRD:00017 ACTG1 ACT|ACTG|BRWS2|DFNA20|DFNA26|HEL-176 actin, gamma 1 protein-coding 13-PTNLD9-TUMOR_peak_21671 chr17 58085955 58086056 + 5.81888 NA intron (NR_002924, intron 3 of 11) intron (NR_002924, intron 3 of 11) 10331 NR_002924 653645 Hs.600085 NR_002924 TBC1D3P1-DHX40P1 DHX40P|DHX40P1|TBC1D3P1 TBC1D3P1-DHX40P1 readthrough transcribed pseudogene pseudo 13-PTNLD9-TUMOR_peak_31351 chr20 47892880 47893060 + 5.81888 NA intron (NM_021035, intron 1 of 13) intron (NM_021035, intron 1 of 13) -1745 NR_003606 441951 Hs.356766 NR_003604 ENSG00000177410 ZFAS1 C20orf199|HSUP1|HSUP2|NCRNA00275|ZNFX1-AS1 ZNFX1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_41952 chr5 126983473 126983593 + 5.81531 NA Intergenic Intergenic -1180 NM_001048252 613212 Hs.66194 NM_001048252 ENSG00000205279 CTXN3 KABE cortexin 3 protein-coding 13-PTNLD9-TUMOR_peak_1692 chr1 48162867 48162996 + 5.81531 NA Intergenic Intergenic 261242 NM_004474 2306 Hs.166188 NM_004474 HPRD:03735 FOXD2 FKHL17|FREAC-9|FREAC9 forkhead box D2 protein-coding 13-PTNLD9-TUMOR_peak_14871 chr13 76259454 76259585 + 5.81531 NA intron (NM_005358, intron 2 of 29) intron (NM_005358, intron 2 of 29) -49389 NR_120412 101927155 Hs.564550 NR_120410 ENSG00000261105 LMO7-AS1 UCHL3-AS1 LMO7 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_11499 chr11 123844677 123844775 + 5.81531 NA Intergenic Intergenic 3672 NM_001004474 219873 Hs.553637 NM_001004474 HPRD:17675 OR10S1 OR11-279 olfactory receptor, family 10, subfamily S, member 1 protein-coding 13-PTNLD9-TUMOR_peak_27947 chr2 109187055 109187159 + 5.81531 NA intron (NM_001193483, intron 1 of 9) intron (NM_001193483, intron 1 of 9) -17650 NM_004987 3987 Hs.597715 NM_004987 HPRD:03978 LIMS1 PINCH|PINCH-1|PINCH1 LIM and senescent cell antigen-like domains 1 protein-coding 13-PTNLD9-TUMOR_peak_15039 chr13 102307308 102307523 + 5.81531 NA intron (NM_001271755, intron 6 of 9) intron (NM_001271755, intron 6 of 9) 165112 NM_001271756 9358 Hs.696554 NM_004791 HPRD:07253 ITGBL1 OSCP|TIED integrin, beta-like 1 (with EGF-like repeat domains) protein-coding 13-PTNLD9-TUMOR_peak_21410 chr17 47807516 47807746 + 5.81531 NA intron (NM_030802, intron 2 of 7) intron (NM_030802, intron 2 of 7) -22318 NM_005827 10237 Hs.154073 NM_005827 HPRD:10237 SLC35B1 UGTREL1 solute carrier family 35, member B1 protein-coding 13-PTNLD9-TUMOR_peak_56750 chrX 154285625 154285924 + 5.81531 NA TTS (NM_023934) TTS (NM_023934) 13773 NM_001018024 100272147 Hs.6917 NM_001018024 ENSG00000182712 CMC4 C6.1B|MTCP1|MTCP1B|MTCP1NB|p8|p8MTCP1 C-x(9)-C motif containing 4 protein-coding 13-PTNLD9-TUMOR_peak_13592 chr12 101916770 101916951 + 5.81531 NA Intergenic MER6A|DNA|TcMar-Tigger 45525 NM_152323 121599 Hs.577097 NM_152323 HPRD:15438 SPIC SPI-C Spi-C transcription factor (Spi-1/PU.1 related) protein-coding 13-PTNLD9-TUMOR_peak_25173 chr19 46459359 46459464 + 5.81531 NA intron (NM_002516, intron 2 of 3) intron (NM_002516, intron 2 of 3) 17246 NM_002516 4858 Hs.375439 NM_002516 NOVA2 ANOVA|NOVA3 neuro-oncological ventral antigen 2 protein-coding 13-PTNLD9-TUMOR_peak_2314 chr1 85313009 85313250 + 5.81531 NA intron (NM_012152, intron 2 of 2) intron (NM_012152, intron 2 of 2) 45767 NM_012152 23566 Hs.674915 NM_012152 HPRD:05486 LPAR3 EDG7|Edg-7|GPCR|HOFNH30|LP-A3|LPA3|RP4-678I3 lysophosphatidic acid receptor 3 protein-coding 13-PTNLD9-TUMOR_peak_56307 chrX 105951441 105951658 + 5.81531 NA intron (NM_024539, intron 1 of 6) intron (NM_024539, intron 1 of 6) 14481 NM_024539 79589 Hs.496542 NM_024539 HPRD:02340 RNF128 GRAIL ring finger protein 128, E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_8224 chr10 104389450 104389602 + 5.81531 NA intron (NM_016169, intron 11 of 11) intron (NM_016169, intron 11 of 11) -14726 NM_030912 81603 Hs.336810 NM_030912 HPRD:06934 TRIM8 GERP|RNF27 tripartite motif containing 8 protein-coding 13-PTNLD9-TUMOR_peak_34429 chr3 46130891 46131014 + 5.81531 NA Intergenic Intergenic -61973 NM_005283 2829 Hs.248116 NM_005283 HPRD:02774 XCR1 CCXCR1|GPR5 chemokine (C motif) receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_47279 chr7 39872844 39872990 + 5.81531 NA Intergenic CpG 99750 NR_026999 349114 Hs.414183 NM_198284 LINC00265 NCRNA00265 long intergenic non-protein coding RNA 265 ncRNA 13-PTNLD9-TUMOR_peak_11556 chr11 126286501 126286613 + 5.81531 NA Intergenic CpG 10480 NM_001254759 6484 Hs.591947 NM_006278 HPRD:00084 ST3GAL4 CGS23|NANTA3|SAT3|SIAT4|SIAT4C|ST3GalIV|STZ ST3 beta-galactoside alpha-2,3-sialyltransferase 4 protein-coding 13-PTNLD9-TUMOR_peak_50679 chr8 39957396 39957533 + 5.81531 NA Intergenic Intergenic -53523 NM_020130 56892 Hs.591849 NM_020130 HPRD:09650 C8orf4 TC-1|TC1 chromosome 8 open reading frame 4 protein-coding 13-PTNLD9-TUMOR_peak_53868 chr9 89509874 89509997 + 5.81531 NA Intergenic MER41A|LTR|ERV1 52169 NM_002048 2619 Hs.65029 NM_002048 HPRD:00747 GAS1 - growth arrest-specific 1 protein-coding 13-PTNLD9-TUMOR_peak_54289 chr9 107526603 107526697 + 5.81531 NA intron (NM_018376, intron 1 of 5) CpG 199 NM_018376 55335 Hs.429294 NM_018376 HPRD:16400 NIPSNAP3B NIPSNAP3 nipsnap homolog 3B (C. elegans) protein-coding 13-PTNLD9-TUMOR_peak_33624 chr3 7546570 7546760 + 5.81531 NA intron (NM_181874, intron 7 of 10) MSTD-int|LTR|ERVL-MaLR 30306 NR_046606 100873937 Hs.570608 NR_046606 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_25366 chr19 49767653 49767798 + 5.81531 NA Intergenic L1ME3|LINE|L1 44400 NR_036209 100422979 NR_036209 MIR4324 - microRNA 4324 ncRNA 13-PTNLD9-TUMOR_peak_19364 chr16 53944986 53945194 + 5.81531 NA intron (NM_001080432, intron 7 of 8) intron (NM_001080432, intron 7 of 8) -128215 NR_103838 100505692 NR_103838 FTO-IT1 - FTO intronic transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_12124 chr12 10869411 10869579 + 5.81531 NA intron (NM_003651, intron 3 of 9) intron (NM_003651, intron 3 of 9) 6458 NM_001145426 8531 Hs.221889 NM_003651 HPRD:10347 YBX3 CSDA|CSDA1|DBPA|ZONAB Y box binding protein 3 protein-coding 13-PTNLD9-TUMOR_peak_56134 chrX 71497016 71497141 + 5.81531 NA promoter-TSS (NM_001007) promoter-TSS (NM_001007) 63 NM_001007 6191 Hs.118076 NM_001007 RPS4X CCG2|DXS306|RPS4|S4|SCAR|SCR10 ribosomal protein S4, X-linked protein-coding 13-PTNLD9-TUMOR_peak_46318 chr6 151388924 151389290 + 5.81531 NA intron (NM_001242768, intron 26 of 27) intron (NM_001242768, intron 26 of 27) -172027 NM_005100 9590 Hs.371240 NM_005100 HPRD:05263 AKAP12 AKAP250|SSeCKS A kinase (PRKA) anchor protein 12 protein-coding 13-PTNLD9-TUMOR_peak_16905 chr15 30395896 30396005 + 5.81284 NA promoter-TSS (NR_026859) promoter-TSS (NR_026859) 15 NR_026859 89837 Hs.510848 NR_026859 ENSG00000178081 ULK4P3 D-X|FAM7A3 ULK4 pseudogene 3 pseudo 13-PTNLD9-TUMOR_peak_32800 chr22 20861786 20861887 + 5.81159 NA promoter-TSS (NM_001003891) promoter-TSS (NM_001003891) 7 NM_001293236 51586 Hs.517421 NM_015889 HPRD:12117 MED15 ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7 mediator complex subunit 15 protein-coding 13-PTNLD9-TUMOR_peak_7263 chr10 47769483 47769658 + 5.80601 NA Intergenic CpG 22720 NM_001098845 728113 Hs.705389 NM_001630 ENSG00000150165 ANXA8L1 ANXA8|ANXA8L2|VAC-beta|bA145E20.2 annexin A8-like 1 protein-coding 13-PTNLD9-TUMOR_peak_22262 chr17 79283017 79283151 + 5.80304 NA promoter-TSS (NR_038080) promoter-TSS (NR_038080) -36 NR_038080 284185 Hs.631762 NM_178519 LINC00482 C17orf55 long intergenic non-protein coding RNA 482 ncRNA 13-PTNLD9-TUMOR_peak_53898 chr9 90873126 90873258 + 5.80304 NA Intergenic Intergenic -123292 NM_001166137 645961 Hs.632070 NM_001166137 SPATA31C2 FAM75C2 SPATA31 subfamily C, member 2 protein-coding 13-PTNLD9-TUMOR_peak_23753 chr19 5790668 5790849 + 5.80304 NA intron (NM_001161619, intron 1 of 11) CpG 491 NM_020175 56931 Hs.284297 NM_020175 HPRD:14252 DUS3L DUS3 dihydrouridine synthase 3-like (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_43128 chr5 174715431 174715569 + 5.80304 NA Intergenic MER5B|DNA|hAT-Charlie 155663 NM_000794 1812 Hs.2624 NM_000794 HPRD:00538 DRD1 DADR|DRD1A dopamine receptor D1 protein-coding 13-PTNLD9-TUMOR_peak_21179 chr17 42872436 42872530 + 5.80304 NA Intergenic Intergenic 35124 NM_005497 10052 Hs.712052 NM_005497 HPRD:08819 GJC1 CX45|GJA7 gap junction protein, gamma 1, 45kDa protein-coding 13-PTNLD9-TUMOR_peak_48896 chr7 121784349 121784459 + 5.80304 NA promoter-TSS (NM_005763) promoter-TSS (NM_005763) -60 NM_005763 10157 Hs.156738 NM_005763 AASS LKR/SDH|LKRSDH|LORSDH aminoadipate-semialdehyde synthase protein-coding 13-PTNLD9-TUMOR_peak_52661 chr9 4315732 4315826 + 5.80304 NA Intergenic Intergenic -15744 NM_001042413 169792 Hs.162125 NM_152629 HPRD:13582 GLIS3 ZNF515 GLIS family zinc finger 3 protein-coding 13-PTNLD9-TUMOR_peak_22875 chr18 29265199 29265293 + 5.80304 NA promoter-TSS (NM_004775) promoter-TSS (NM_004775) -560 NM_004775 9331 Hs.591063 NM_004775 HPRD:06808 B4GALT6 B4Gal-T6|beta4Gal-T6 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 6 protein-coding 13-PTNLD9-TUMOR_peak_39843 chr4 170146691 170146785 + 5.80304 NA intron (NM_020870, intron 2 of 11) L2a|LINE|L2 45511 NM_020870 57630 Hs.301804 NM_020870 HPRD:15335 SH3RF1 POSH|RNF142|SH3MD2 SH3 domain containing ring finger 1 protein-coding 13-PTNLD9-TUMOR_peak_42522 chr5 146933922 146934122 + 5.80304 NA Intergenic Intergenic -5535 NR_038902 153469 Hs.184323 NR_038902 JAKMIP2-AS1 - JAKMIP2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_22654 chr18 13138039 13138133 + 5.80304 NA Intergenic MER51A|LTR|ERV1 -80643 NM_181482 753 Hs.731853 NM_004338 HPRD:07358 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 13-PTNLD9-TUMOR_peak_1678 chr1 47890250 47890371 + 5.80304 NA Intergenic Intergenic 8566 NM_012186 2301 Hs.112968 NM_012186 HPRD:03058 FOXE3 FKHL12|FREAC8 forkhead box E3 protein-coding 13-PTNLD9-TUMOR_peak_48845 chr7 113173861 113173955 + 5.80304 NA Intergenic L1PA2|LINE|L1 385174 NM_002711 5506 Hs.458309 NM_002711 HPRD:02950 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1, regulatory subunit 3A protein-coding 13-PTNLD9-TUMOR_peak_17566 chr15 70563876 70564015 + 5.80304 NA Intergenic ERVL-E-int|LTR|ERVL -173689 NM_001105192 7090 Hs.287362 NM_005078 HPRD:02558 TLE3 ESG|ESG3|GRG3|HsT18976 transducin-like enhancer of split 3 protein-coding 13-PTNLD9-TUMOR_peak_510 chr1 16212790 16213041 + 5.80304 NA intron (NM_015001, intron 3 of 14) intron (NM_015001, intron 3 of 14) -38273 NR_024279 729614 Hs.119298 NR_024279 ENSG00000179743 FLJ37453 - uncharacterized LOC729614 ncRNA 13-PTNLD9-TUMOR_peak_49246 chr7 135800147 135800241 + 5.80042 NA Intergenic L1PA15-16|LINE|L1 -137990 NM_001128619 767558 Hs.602015 NM_001128619 LUZP6 MPD6|MTPNUT leucine zipper protein 6 protein-coding 13-PTNLD9-TUMOR_peak_34617 chr3 50700971 50701065 + 5.80042 NA Intergenic AluY|SINE|Alu -11493 NR_039950 100616138 NR_039950 miRBase:MI0017434 MIR4787 - microRNA 4787 ncRNA 13-PTNLD9-TUMOR_peak_16541 chr14 98444342 98444495 + 5.80042 NA promoter-TSS (NR_015430) promoter-TSS (NR_015430) 43 NR_015430 388011 Hs.651477 NR_015430 ENSG00000246223 C14orf64 - chromosome 14 open reading frame 64 ncRNA 13-PTNLD9-TUMOR_peak_32160 chr21 34572230 34572392 + 5.80042 NA Intergenic Intergenic -29770 NR_024102 728409 Hs.125234 NR_024102 ENSG00000229086 C21orf54 - chromosome 21 open reading frame 54 ncRNA 13-PTNLD9-TUMOR_peak_22953 chr18 34834492 34834727 + 5.80042 NA intron (NM_001025089, intron 10 of 11) intron (NM_001025089, intron 10 of 11) 311391 NM_001025089 56853 Hs.435976 NM_020180 HPRD:12534 CELF4 BRUNOL-4|BRUNOL4 CUGBP, Elav-like family member 4 protein-coding 13-PTNLD9-TUMOR_peak_9248 chr11 18742700 18742870 + 5.80042 NA intron (NM_173588, intron 4 of 22) CpG 4992 NM_173588 283284 Hs.434152 NM_173588 HPRD:08229 IGSF22 - immunoglobulin superfamily, member 22 protein-coding 13-PTNLD9-TUMOR_peak_52000 chr8 128889145 128889267 + 5.80042 NA Intergenic Intergenic -13668 NR_003367 5820 Hs.133107 NR_003367 ENSG00000249859 PVT1 LINC00079|NCRNA00079 Pvt1 oncogene (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_22960 chr18 35061593 35061742 + 5.80042 NA intron (NM_001025087, intron 2 of 12) intron (NM_001025087, intron 2 of 12) 84333 NM_001025089 56853 Hs.435976 NM_020180 HPRD:12534 CELF4 BRUNOL-4|BRUNOL4 CUGBP, Elav-like family member 4 protein-coding 13-PTNLD9-TUMOR_peak_23515 chr18 76930267 76930389 + 5.80042 NA intron (NM_198531, intron 7 of 29) intron (NM_198531, intron 7 of 29) 100931 NM_198531 374868 Hs.465475 NM_198531 HPRD:16528 ATP9B ATPASEP|ATPIIB|NEO1L|hMMR1 ATPase, class II, type 9B protein-coding 13-PTNLD9-TUMOR_peak_54001 chr9 94896334 94896504 + 5.79983 NA intron (NR_015444, intron 2 of 12) intron (NR_015444, intron 2 of 12) 1303 NR_015444 100128076 Hs.716275 NR_015444 LOC100128076 - protein tyrosine phosphatase pseudogene pseudo 13-PTNLD9-TUMOR_peak_49759 chr7 153583735 153583894 + 5.79983 NA promoter-TSS (NM_001039350) promoter-TSS (NM_001039350) -368 NM_001039350 1804 Hs.490684 NM_001936 HPRD:00525 DPP6 DPPX|VF2 dipeptidyl-peptidase 6 protein-coding 13-PTNLD9-TUMOR_peak_143 chr1 2487937 2488031 + 5.79983 NA non-coding (NR_037844, exon 2 of 7) non-coding (NR_037844, exon 2 of 7) 180 NM_003820 8764 Hs.512898 NM_003820 HPRD:04122 TNFRSF14 ATAR|CD270|HVEA|HVEM|LIGHTR|TR2 tumor necrosis factor receptor superfamily, member 14 protein-coding 13-PTNLD9-TUMOR_peak_21428 chr17 48120869 48120963 + 5.79983 NA Intergenic MIR3|SINE|MIR 12187 NR_038230 284080 Hs.274864 NR_038230 ENSG00000246640 LOC284080 - uncharacterized LOC284080 ncRNA 13-PTNLD9-TUMOR_peak_31923 chr21 10893602 10893733 + 5.79983 NA Intergenic MLT1A0|LTR|ERVL-MaLR 97276 NM_001290224 7179 Hs.122986 NM_199259 HPRD:05064 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 13-PTNLD9-TUMOR_peak_55034 chr9 139267027 139267141 + 5.79983 NA intron (NM_052813, intron 1 of 12) intron (NM_052813, intron 1 of 12) 1049 NM_052813 64170 Hs.694071 NM_052813 HPRD:06236 CARD9 CANDF2|hCARD9 caspase recruitment domain family, member 9 protein-coding 13-PTNLD9-TUMOR_peak_20180 chr16 90186265 90186412 + 5.79966 NA Intergenic MER21C|LTR|ERVL -44000 NM_001098173 11105 Hs.406695 NM_052996 HPRD:17903 PRDM7 PFM4|ZNF910 PR domain containing 7 protein-coding 13-PTNLD9-TUMOR_peak_12766 chr12 51422019 51422136 + 5.79746 NA promoter-TSS (NM_001174125) promoter-TSS (NM_001174125) -19 NM_001174125 4891 Hs.505545 NM_000617 HPRD:02750 SLC11A2 DCT1|DMT1|NRAMP2 solute carrier family 11 (proton-coupled divalent metal ion transporter), member 2 protein-coding 13-PTNLD9-TUMOR_peak_25618 chr19 54380954 54381078 + 5.79746 NA Intergenic LTR13A|LTR|ERVK -4451 NM_002739 5582 Hs.631564 NM_002739 HPRD:01502 PRKCG PKC-gamma|PKCC|PKCG|SCA14 protein kinase C, gamma protein-coding 13-PTNLD9-TUMOR_peak_5775 chr1 229762210 229762420 + 5.79719 NA promoter-TSS (NM_001025247) promoter-TSS (NM_001025247) 334 NM_014777 9816 Hs.533628 NM_014777 HPRD:17178 URB2 KIAA0133|NET10|NPA2 URB2 ribosome biogenesis 2 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_28984 chr2 166809911 166810134 + 5.79719 NA intron (NM_024753, intron 1 of 28) CpG 326 NM_024753 79809 Hs.310672 NM_024753 HPRD:07752 TTC21B ATD4|IFT139|JBTS11|NPHP12|SRTD4|THM1 tetratricopeptide repeat domain 21B protein-coding 13-PTNLD9-TUMOR_peak_46926 chr7 16456627 16456782 + 5.79719 NA intron (NM_001101417, intron 1 of 8) L1PA16|LINE|L1 4243 NM_001101426 729920 Hs.636502 NM_001101417 ISPD MDDGA7|Nip|hCG_1745121 isoprenoid synthase domain containing protein-coding 13-PTNLD9-TUMOR_peak_36913 chr3 182511295 182511473 + 5.79719 NA promoter-TSS (NM_014616) promoter-TSS (NM_014616) 93 NM_014616 23200 Hs.478429 NM_014616 HPRD:10432 ATP11B ATPIF|ATPIR ATPase, class VI, type 11B protein-coding 13-PTNLD9-TUMOR_peak_37081 chr3 186648020 186648278 + 5.79719 NA promoter-TSS (NM_173217) promoter-TSS (NM_173217) -166 NM_173216 6480 Hs.207459 NM_003032 HPRD:00184 ST6GAL1 SIAT1|ST6GalI|ST6N ST6 beta-galactosamide alpha-2,6-sialyltranferase 1 protein-coding 13-PTNLD9-TUMOR_peak_12277 chr12 20119985 20120288 + 5.79719 NA Intergenic Intergenic -47483 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LOC100506393 - uncharacterized LOC100506393 ncRNA 13-PTNLD9-TUMOR_peak_26028 chr2 8825361 8825504 + 5.79568 NA TTS (NM_002166) TTS (NM_002166) 3319 NM_002166 3398 Hs.180919 NM_002166 HPRD:02664 ID2 GIG8|ID2A|ID2H|bHLHb26 inhibitor of DNA binding 2, dominant negative helix-loop-helix protein protein-coding 13-PTNLD9-TUMOR_peak_7262 chr10 47768987 47769176 + 5.79280 NA Intergenic Intergenic 22231 NM_001098845 728113 Hs.705389 NM_001630 ENSG00000150165 ANXA8L1 ANXA8|ANXA8L2|VAC-beta|bA145E20.2 annexin A8-like 1 protein-coding 13-PTNLD9-TUMOR_peak_6587 chr10 17272078 17272218 + 5.78987 NA promoter-TSS (NR_108061) promoter-TSS (NR_108061) -164 NR_108061 100507347 Hs.740502 NR_108060 VIM-AS1 - VIM antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_45308 chr6 52783232 52783337 + 5.78987 NA Intergenic HERV17-int|LTR|ERV1 -8788 NM_000847 2940 Hs.102484 NM_000847 HPRD:07290 GSTA3 GSTA3-3|GTA3 glutathione S-transferase alpha 3 protein-coding 13-PTNLD9-TUMOR_peak_48610 chr7 101524551 101524755 + 5.78987 NA intron (NM_181552, intron 1 of 23) intron (NM_181552, intron 1 of 23) 63771 NM_181552 1523 Hs.191482 NM_001913 HPRD:00295 CUX1 CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GOLIM6|Nbla10317|p100|p110|p200|p75 cut-like homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_36527 chr3 157218162 157218256 + 5.78987 NA promoter-TSS (NM_024621) promoter-TSS (NM_024621) -764 NM_024621 79674 Hs.658046 NM_024621 HPRD:07782 VEPH1 MELT|VEPH ventricular zone expressed PH domain-containing 1 protein-coding 13-PTNLD9-TUMOR_peak_3516 chr1 149814677 149814832 + 5.78768 NA promoter-TSS (NM_003516).2 promoter-TSS (NM_003516).2 -436 NM_001040874 723790 Hs.530461 NM_001040874 ENSG00000203812 HIST2H2AA4 H2A/R histone cluster 2, H2aa4 protein-coding 13-PTNLD9-TUMOR_peak_15380 chr14 24712222 24712397 + 5.78173 NA promoter-TSS (NM_012461) promoter-TSS (NM_012461) -429 NM_012461 26277 Hs.496191 NM_012461 HPRD:16056 TINF2 DKCA3|TIN2 TERF1 (TRF1)-interacting nuclear factor 2 protein-coding 13-PTNLD9-TUMOR_peak_16428 chr14 90885771 90885948 + 5.77667 NA Intergenic Intergenic 22532 NM_006888 801 Hs.282410 NM_006888 HPRD:00241 CALM1 CALML2|CAMI|CPVT4|DD132|PHKD|caM calmodulin 1 (phosphorylase kinase, delta) protein-coding 13-PTNLD9-TUMOR_peak_32973 chr22 25171846 25171975 + 5.77667 NA Intergenic LTR8|LTR|ERV1 -1223 NM_001255975 440822 Hs.448343 NM_001008496 HPRD:17855 PIWIL3 HIWI3 piwi-like RNA-mediated gene silencing 3 protein-coding 13-PTNLD9-TUMOR_peak_25399 chr19 50220871 50220965 + 5.77667 NA Intergenic LTR50|LTR|ERVL 26553 NM_001199753 126129 Hs.112195 NM_152359 HPRD:12315 CPT1C CATL1|CPT1-B|CPT1P|CPTI-B|CPTIC carnitine palmitoyltransferase 1C protein-coding 13-PTNLD9-TUMOR_peak_11557 chr11 126310870 126311029 + 5.77667 NA intron (NM_001301097, intron 10 of 15) intron (NM_001301097, intron 10 of 15) 34872 NM_001254759 6484 Hs.591947 NM_006278 HPRD:00084 ST3GAL4 CGS23|NANTA3|SAT3|SIAT4|SIAT4C|ST3GalIV|STZ ST3 beta-galactoside alpha-2,3-sialyltransferase 4 protein-coding 13-PTNLD9-TUMOR_peak_29085 chr2 173037317 173037422 + 5.77667 NA Intergenic CpG -69891 NM_004405 1746 Hs.419 NM_004405 HPRD:00527 DLX2 TES-1|TES1 distal-less homeobox 2 protein-coding 13-PTNLD9-TUMOR_peak_44870 chr6 37441263 37441446 + 5.77667 NA exon (NM_015050, exon 17 of 24) exon (NM_015050, exon 17 of 24) 26346 NM_138493 154467 Hs.284207 NM_138493 HPRD:18561 CCDC167 C6orf129|HSPC265 coiled-coil domain containing 167 protein-coding 13-PTNLD9-TUMOR_peak_12719 chr12 49647004 49647117 + 5.77667 NA Intergenic L2|LINE|L2 -11805 NM_032704 84790 Hs.652390 NM_032704 HPRD:06747 TUBA1C TUBA6|bcm948 tubulin, alpha 1c protein-coding 13-PTNLD9-TUMOR_peak_20297 chr17 4167106 4167365 + 5.77667 NA promoter-TSS (NM_016376) promoter-TSS (NM_016376) 39 NR_047571 51479 Hs.696087 NM_016376 HPRD:09717 ANKFY1 ANKHZN|BTBD23|ZFYVE14 ankyrin repeat and FYVE domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_1194 chr1 38166662 38166804 + 5.77667 NA intron (NM_001256875, intron 5 of 9) L2|LINE|L2 8660 NM_001256875 55143 Hs.524571 NM_018101 HPRD:13017 CDCA8 BOR|BOREALIN|DasraB|MESRGP cell division cycle associated 8 protein-coding 13-PTNLD9-TUMOR_peak_41046 chr5 63430641 63430829 + 5.77667 NA Intergenic L1PA2|LINE|L1 -30936 NM_001113561 285671 Hs.657843 NM_178532 HPRD:15263 RNF180 - ring finger protein 180 protein-coding 13-PTNLD9-TUMOR_peak_17693 chr15 75961538 75961730 + 5.77667 NA Intergenic Intergenic 20286 NM_153271 257364 Hs.8705 NM_153271 SNX33 SH3PX3|SH3PXD3C|SNX30 sorting nexin 33 protein-coding 13-PTNLD9-TUMOR_peak_38994 chr4 103811128 103811316 + 5.77667 NA 3' UTR (NM_001008388, exon 3 of 3) 3' UTR (NM_001008388, exon 3 of 3) 21087 NM_001008388 493856 Hs.444955 NM_001008388 CISD2 ERIS|Miner1|NAF-1|WFS2|ZCD2 CDGSH iron sulfur domain 2 protein-coding 13-PTNLD9-TUMOR_peak_34093 chr3 24341445 24341681 + 5.77667 NA intron (NM_001128176, intron 2 of 10) intron (NM_001128176, intron 2 of 10) 148748 NR_121667 101927854 Hs.570625 NR_121667 LOC101927854 - uncharacterized LOC101927854 ncRNA 13-PTNLD9-TUMOR_peak_17494 chr15 67413496 67413764 + 5.77667 NA intron (NM_005902, intron 1 of 8) intron (NM_005902, intron 1 of 8) -4424 NM_001145102 4088 Hs.727986 NM_005902 HPRD:04380 SMAD3 HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3 SMAD family member 3 protein-coding 13-PTNLD9-TUMOR_peak_37103 chr3 187037508 187037718 + 5.77667 NA Intergenic Intergenic -27803 NR_033519 5648 Hs.89983 NM_001879 HPRD:02749 MASP1 3MC1|CRARF|CRARF1|MAP1|MASP|MASP3|MAp44|PRSS5|RaRF mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor) protein-coding 13-PTNLD9-TUMOR_peak_10441 chr11 69167586 69167716 + 5.77667 NA Intergenic MIR|SINE|MIR 106046 NM_001300924 26579 Hs.523848 NM_138768 HPRD:16130 MYEOV OCIM myeloma overexpressed protein-coding 13-PTNLD9-TUMOR_peak_2514 chr1 94196406 94196534 + 5.77667 NA intron (NM_001261408, intron 2 of 13) L1MC3|LINE|L1 -49076 NM_003567 8412 Hs.36958 NM_003567 HPRD:05268 BCAR3 NSP2|SH2D3B breast cancer anti-estrogen resistance 3 protein-coding 13-PTNLD9-TUMOR_peak_51576 chr8 108144907 108145015 + 5.77667 NA Intergenic Intergenic -362489 NM_139166 137735 Hs.374668 NM_139166 HPRD:11608 ABRA STARS actin-binding Rho activating protein protein-coding 13-PTNLD9-TUMOR_peak_56357 chrX 112064284 112064416 + 5.77667 NA intron (NM_133265, intron 2 of 11) intron (NM_133265, intron 2 of 11) 2004 NM_001113490 154796 Hs.528051 NM_133265 HPRD:02327 AMOT - angiomotin protein-coding 13-PTNLD9-TUMOR_peak_44649 chr6 32997192 32997332 + 5.77667 NA Intergenic Intergenic -19873 NM_002119 3111 Hs.631991 NM_002119 HPRD:00837 HLA-DOA HLA-DNA|HLA-DZA|HLADZ major histocompatibility complex, class II, DO alpha protein-coding 13-PTNLD9-TUMOR_peak_49348 chr7 139378982 139379219 + 5.77667 NA intron (NM_022740, intron 2 of 14) intron (NM_022740, intron 2 of 14) 98593 NM_022740 28996 Hs.731417 NM_022740 HPRD:06039 HIPK2 PRO0593 homeodomain interacting protein kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_39450 chr4 141011480 141011584 + 5.77667 NA intron (NM_018717, intron 1 of 5) intron (NM_018717, intron 1 of 5) 63701 NM_018717 55534 Hs.586165 NM_018717 HPRD:10066 MAML3 CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3 mastermind-like 3 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_224 chr1 7019539 7019853 + 5.77664 NA intron (NM_015215, intron 3 of 22) MIRb|SINE|MIR 174312 NR_038934 23261 Hs.397705 NM_015215 HPRD:16681 CAMTA1 CANPMR calmodulin binding transcription activator 1 protein-coding 13-PTNLD9-TUMOR_peak_17985 chr15 91446352 91446598 + 5.77319 NA promoter-TSS (NM_006122) promoter-TSS (NM_006122) -945 NM_006122 4122 Hs.116459 NM_006122 HPRD:02994 MAN2A2 MANA2X mannosidase, alpha, class 2A, member 2 protein-coding 13-PTNLD9-TUMOR_peak_40310 chr5 10513678 10513780 + 5.77319 NA Intergenic Intergenic -10889 NR_104606 101929412 Hs.508287 NR_104606 ENSG00000249396 LOC101929412 - uncharacterized LOC101929412 ncRNA 13-PTNLD9-TUMOR_peak_3975 chr1 156783890 156783997 + 5.77319 NA intron (NM_001161443, intron 3 of 7) CpG-1809 -1599 NM_001007792 4914 Hs.406293 NM_002529 HPRD:01869 NTRK1 MTC|TRK|TRK1|TRKA|Trk-A|p140-TrkA neurotrophic tyrosine kinase, receptor, type 1 protein-coding 13-PTNLD9-TUMOR_peak_45115 chr6 43940320 43940514 + 5.77319 NA Intergenic Intergenic -27920 NM_001171992 221416 Hs.531926 NM_153246 HPRD:14640 C6orf223 - chromosome 6 open reading frame 223 protein-coding 13-PTNLD9-TUMOR_peak_48513 chr7 100048162 100048263 + 5.77319 NA Intergenic Intergenic 13682 NM_001004323 402573 Hs.632306 NM_001004323 HPRD:17558 C7orf61 - chromosome 7 open reading frame 61 protein-coding 13-PTNLD9-TUMOR_peak_28683 chr2 149372309 149372579 + 5.77319 NA Intergenic Intergenic -30116 NM_015630 26122 Hs.23270 NM_015630 HPRD:13274 EPC2 EPC-LIKE enhancer of polycomb homolog 2 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_20030 chr16 87552186 87552435 + 5.77319 NA Intergenic Intergenic 24517 NR_110943 101928737 Hs.579009 NR_110943 ENSG00000260750 LOC101928737 - uncharacterized LOC101928737 ncRNA 13-PTNLD9-TUMOR_peak_35522 chr3 120278597 120278724 + 5.77319 NA Intergenic Intergenic -36468 NM_004547 4710 Hs.304613 NM_004547 HPRD:11955 NDUFB4 B15|CI-B15 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 4, 15kDa protein-coding 13-PTNLD9-TUMOR_peak_1725 chr1 49061896 49062006 + 5.77308 NA intron (NM_032785, intron 9 of 13) intron (NM_032785, intron 9 of 13) -124071 NM_019073 54558 Hs.538103 NM_019073 HPRD:15430 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 13-PTNLD9-TUMOR_peak_11621 chr11 129305798 129305895 + 5.77308 NA intron (NM_003658, intron 1 of 3) MER117|DNA|hAT-Charlie 59965 NM_003658 8538 Hs.591944 NM_003658 HPRD:16074 BARX2 - BARX homeobox 2 protein-coding 13-PTNLD9-TUMOR_peak_23553 chr18 77793601 77793701 + 5.77308 NA promoter-TSS (NM_024805) promoter-TSS (NM_024805) -695 NM_001171967 79863 Hs.728931 NM_024805 RBFA C18orf22|HsT169 ribosome binding factor A (putative) protein-coding 13-PTNLD9-TUMOR_peak_23905 chr19 9906899 9907068 + 5.77308 NA Intergenic MER66C|LTR|ERV1 22748 NM_017703 54850 Hs.12439 NM_017703 HPRD:12363 FBXL12 Fbl12 F-box and leucine-rich repeat protein 12 protein-coding 13-PTNLD9-TUMOR_peak_44719 chr6 34023158 34023258 + 5.77308 NA intron (NM_001256809, intron 4 of 8) intron (NM_001256809, intron 4 of 8) 50551 NM_001256813 2914 Hs.429018 NM_000841 HPRD:04978 GRM4 GPRC1D|MGLUR4|mGlu4 glutamate receptor, metabotropic 4 protein-coding 13-PTNLD9-TUMOR_peak_28861 chr2 160142520 160142636 + 5.77308 NA intron (NM_001128212, intron 1 of 10) intron (NM_001128212, intron 1 of 10) 485 NM_152528 151525 Hs.20848 NM_152528 HPRD:08773 WDSUB1 UBOX6|WDSAM1 WD repeat, sterile alpha motif and U-box domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_48304 chr7 92077282 92077474 + 5.77308 NA intron (NR_052016, intron 1 of 5) CpG 616 NR_052016 57798 Hs.21145 NM_021167 GATAD1 CMD2B|ODAG|RG083M05.2 GATA zinc finger domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_40422 chr5 16616764 16616914 + 5.77131 NA exon (NM_001034850, exon 1 of 9) exon (NM_001034850, exon 1 of 9) 328 NM_001034850 54463 Hs.481704 NM_019000 HPRD:07879 FAM134B JK-1|JK1 family with sequence similarity 134, member B protein-coding 13-PTNLD9-TUMOR_peak_21257 chr17 44432213 44432364 + 5.77131 NA intron (NM_016632, intron 2 of 4).3 AluSz|SINE|Alu 6846 NM_001039083 100506084 Hs.559259 NM_001039083 ENSG00000228696 ARL17B ARL17|ARL17A ADP-ribosylation factor-like 17B protein-coding 13-PTNLD9-TUMOR_peak_16558 chr14 100027679 100027838 + 5.77131 NA intron (NM_001144995, intron 1 of 5) intron (NM_001144995, intron 1 of 5) 42969 NM_001144995 317762 Hs.709288 NM_001144995 ENSG00000205476 CCDC85C - coiled-coil domain containing 85C protein-coding 13-PTNLD9-TUMOR_peak_44603 chr6 32086726 32086842 + 5.77131 NA exon (NM_001136153, exon 10 of 18).3 exon (NM_001136153, exon 10 of 18).3 9233 NM_001136153 1388 Hs.42853 NM_004381 HPRD:02992 ATF6B CREB-RP|CREBL1|G13 activating transcription factor 6 beta protein-coding 13-PTNLD9-TUMOR_peak_16682 chr14 105537271 105537365 + 5.77131 NA Intergenic MER21C|LTR|ERVL -5431 NM_013345 29933 Hs.532504 NM_013345 HPRD:06936 GPR132 G2A G protein-coupled receptor 132 protein-coding 13-PTNLD9-TUMOR_peak_36104 chr3 138503538 138503655 + 5.77131 NA Intergenic SVA_B|Other|Other -25395 NM_006219 5291 Hs.239818 NM_006219 PIK3CB P110BETA|PI3K|PI3KBETA|PIK3C1 phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit beta protein-coding 13-PTNLD9-TUMOR_peak_36028 chr3 134624148 134624335 + 5.77131 NA intron (NM_004441, intron 1 of 15) intron (NM_004441, intron 1 of 15) 110142 NM_004441 2047 Hs.116092 NM_004441 HPRD:02790 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 13-PTNLD9-TUMOR_peak_3088 chr1 120524691 120524875 + 5.77131 NA intron (NM_024408, intron 5 of 33) intron (NM_024408, intron 5 of 33) -85636 NM_021794 11085 Hs.283011 NM_021794 HPRD:05307 ADAM30 svph4 ADAM metallopeptidase domain 30 protein-coding 13-PTNLD9-TUMOR_peak_51999 chr8 128888347 128888528 + 5.77131 NA Intergenic Intergenic -14437 NR_003367 5820 Hs.133107 NR_003367 ENSG00000249859 PVT1 LINC00079|NCRNA00079 Pvt1 oncogene (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_29182 chr2 177418491 177418640 + 5.77073 NA Intergenic Intergenic 47215 NR_031648 100302142 NR_031648 MIR1246 MIRN1246|hsa-mir-1246 microRNA 1246 ncRNA 13-PTNLD9-TUMOR_peak_51832 chr8 124540533 124540628 + 5.77073 NA intron (NM_148177, intron 1 of 5) intron (NM_148177, intron 1 of 5) 3803 NM_148177 114907 Hs.403933 NM_058229 HPRD:05966 FBXO32 Fbx32|MAFbx F-box protein 32 protein-coding 13-PTNLD9-TUMOR_peak_10733 chr11 78021612 78021795 + 5.77073 NA intron (NM_080491, intron 1 of 9) intron (NM_080491, intron 1 of 9) 31223 NM_012296 9846 Hs.429434 NM_012296 HPRD:05866 GAB2 - GRB2-associated binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_6864 chr10 31871798 31871919 + 5.77073 NA Intergenic Intergenic 261794 NM_001174094 6935 Hs.124503 NM_030751 HPRD:01798 ZEB1 AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A zinc finger E-box binding homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_54878 chr9 131814941 131815120 + 5.77073 NA intron (NM_032809, intron 6 of 15) intron (NM_032809, intron 6 of 15) 15777 NM_032809 84895 Hs.632693 NM_032809 HPRD:12965 FAM73B C9orf54 family with sequence similarity 73, member B protein-coding 13-PTNLD9-TUMOR_peak_48783 chr7 107263081 107263193 + 5.77073 NA non-coding (NR_027830, exon 7 of 7) non-coding (NR_027830, exon 7 of 7) -37943 NM_000441 5172 Hs.571246 NM_000441 HPRD:05735 SLC26A4 DFNB4|EVA|PDS|TDH2B solute carrier family 26 (anion exchanger), member 4 protein-coding 13-PTNLD9-TUMOR_peak_15537 chr14 35147757 35147866 + 5.77073 NA Intergenic Intergenic 35212 NM_021914 1073 Hs.180141 NM_021914 HPRD:03262 CFL2 NEM7 cofilin 2 (muscle) protein-coding 13-PTNLD9-TUMOR_peak_29780 chr2 216946345 216946595 + 5.77073 NA promoter-TSS (NM_138390) promoter-TSS (NM_138390) 69 NM_018441 55825 Hs.281680 NM_018441 HPRD:09320 PECR DCRRP|HPDHASE|HSA250303|PVIARL|SDR29C1|TERP peroxisomal trans-2-enoyl-CoA reductase protein-coding 13-PTNLD9-TUMOR_peak_9694 chr11 46360586 46360821 + 5.77073 NA intron (NM_201532, intron 1 of 30) intron (NM_201532, intron 1 of 30) -6114 NM_201533 8525 Hs.502461 NM_003646 HPRD:03260 DGKZ DAGK5|DAGK6|DGK-ZETA|hDGKzeta diacylglycerol kinase, zeta protein-coding 13-PTNLD9-TUMOR_peak_20318 chr17 4752436 4752733 + 5.77073 NA intron (NM_001024937, intron 1 of 31) intron (NM_001024937, intron 1 of 31) 15949 NM_153827 50488 Hs.443417 NM_015716 HPRD:11366 MINK1 B55|MAP4K6|MINK|YSK2|ZC3|hMINK|hMINKbeta misshapen-like kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_5965 chr1 235550659 235550802 + 5.77073 NA intron (NM_001287802, intron 2 of 15) L1PA3|LINE|L1 20055 NM_001079515 6905 Hs.744998 NM_003193 HPRD:05381 TBCE HRD|KCS|KCS1|pac2 tubulin folding cofactor E protein-coding 13-PTNLD9-TUMOR_peak_678 chr1 24018099 24018350 + 5.77073 NA promoter-TSS (NM_001199802) promoter-TSS (NM_001199802) -45 NM_000975 6135 Hs.719951 NM_000975 HPRD:10364 RPL11 DBA7|GIG34|L11 ribosomal protein L11 protein-coding 13-PTNLD9-TUMOR_peak_48199 chr7 84765369 84765469 + 5.77073 NA Intergenic Intergenic -14172 NM_152754 223117 Hs.201340 NM_152754 HPRD:15321 SEMA3D Sema-Z2|coll-2 sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D protein-coding 13-PTNLD9-TUMOR_peak_46050 chr6 129812294 129812388 + 5.77073 NA intron (NM_001079823, intron 55 of 63) intron (NM_001079823, intron 55 of 63) 219029 NM_033515 93663 Hs.486458 NM_033515 HPRD:12474 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 13-PTNLD9-TUMOR_peak_33460 chr22 46771207 46771302 + 5.77073 NA intron (NM_014246, intron 24 of 34) intron (NM_014246, intron 24 of 34) 39956 NM_001282783 55687 Hs.439524 NM_018006 HPRD:15571 TRMU MTO2|MTU1|TRMT|TRMT1|TRNT1 tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase protein-coding 13-PTNLD9-TUMOR_peak_48894 chr7 121078113 121078230 + 5.77073 NA Intergenic Intergenic -41749 NM_001040020 10447 Hs.434053 NM_014888 HPRD:12270 FAM3C ILEI family with sequence similarity 3, member C protein-coding 13-PTNLD9-TUMOR_peak_40508 chr5 28408423 28408563 + 5.77073 NA Intergenic MER66-int|LTR|ERV1 -518484 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - lymphocyte-specific protein 1 pseudogene 3 pseudo 13-PTNLD9-TUMOR_peak_40305 chr5 10458071 10458182 + 5.76884 NA intron (NM_031916, intron 3 of 4) MER63A|DNA|hAT-Blackjack 16152 NM_001201466 83853 Hs.381089 NM_031916 HPRD:17986 ROPN1L ASP|RSPH11 rhophilin associated tail protein 1-like protein-coding 13-PTNLD9-TUMOR_peak_23971 chr19 11050166 11050338 + 5.76884 NA Intergenic Intergenic 10828 NM_138358 90580 Hs.164026 NM_138358 HPRD:14275 C19orf52 - chromosome 19 open reading frame 52 protein-coding 13-PTNLD9-TUMOR_peak_18094 chr15 101263617 101263975 + 5.75737 NA Intergenic Intergenic 121041 NM_198243 140460 Hs.31845 NM_024708 HPRD:10674 ASB7 - ankyrin repeat and SOCS box containing 7 protein-coding 13-PTNLD9-TUMOR_peak_49081 chr7 130576327 130576454 + 5.74938 NA intron (NR_110472, intron 2 of 3) intron (NR_110472, intron 2 of 3) -14092 NR_029517 407024 NR_029517 miRBase:MI0000105 MIR29B1 MIRN29B1|miRNA29B1 microRNA 29b-1 ncRNA 13-PTNLD9-TUMOR_peak_50346 chr8 23315084 23315348 + 5.74916 NA promoter-TSS (NM_001128930) promoter-TSS (NM_001128930) 28 NM_004901 9583 Hs.444389 NM_004901 HPRD:09618 ENTPD4 LALP70|LAP70|LYSAL1|NTPDase-4|UDPase ectonucleoside triphosphate diphosphohydrolase 4 protein-coding 13-PTNLD9-TUMOR_peak_53275 chr9 41557892 41558000 + 5.74916 NA Intergenic Intergenic 41892 NR_110999 653123 NR_110999 FAM74A6 - family with sequence similarity 74, member A6 ncRNA 13-PTNLD9-TUMOR_peak_3417 chr1 147848826 147848920 + 5.74916 NA intron (NR_102404, intron 17 of 18).2 intron (NR_102404, intron 17 of 18).2 -11561 NR_106967 102466225 NR_106967 MIR6077 MIR6077-1|MIR6077-2|hsa-mir-6077-1|hsa-mir-6077-2 microRNA 6077 ncRNA 13-PTNLD9-TUMOR_peak_3591 chr1 151020151 151020468 + 5.74916 NA promoter-TSS (NM_017860) promoter-TSS (NM_017860) 50 NM_017860 54964 Hs.549171 NM_017860 HPRD:08625 C1orf56 MENT chromosome 1 open reading frame 56 protein-coding 13-PTNLD9-TUMOR_peak_44288 chr6 27101633 27101836 + 5.74808 NA TTS (NM_021064) TTS (NM_021064) 917 NM_021064 8969 Hs.51011 NM_021064 HIST1H2AG H2A.1b|H2A/p|H2AFP|H2AG|pH2A/f histone cluster 1, H2ag protein-coding 13-PTNLD9-TUMOR_peak_7191 chr10 45453761 45453889 + 5.74706 NA intron (NR_033842, intron 1 of 7) intron (NR_033842, intron 1 of 7) 1312 NR_033842 220980 Hs.568801 NR_033842 ENSG00000224812 TMEM72-AS1 - TMEM72 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_31664 chr20 55921604 55921819 + 5.74706 NA intron (NR_039970, intron 1 of 2) intron (NR_039970, intron 1 of 2) -4434 NM_003610 8480 Hs.371698 NM_003610 RAE1 MIG14|MRNP41|Mnrp41|dJ481F12.3|dJ800J21.1 ribonucleic acid export 1 protein-coding 13-PTNLD9-TUMOR_peak_27987 chr2 110460355 110460546 + 5.74706 NA Intergenic Intergenic 88539 NM_023016 65124 Hs.355455 NM_023016 HPRD:08643 SOWAHC ANKRD57|C2orf26 sosondowah ankyrin repeat domain family member C protein-coding 13-PTNLD9-TUMOR_peak_16960 chr15 32680398 32680497 + 5.74644 NA Intergenic Intergenic 15046 NM_001282493 653125 NM_001282493 GOLGA8K - golgin A8 family, member K protein-coding 13-PTNLD9-TUMOR_peak_14983 chr13 98628593 98628706 + 5.74189 NA intron (NM_002271, intron 3 of 28) CpG 22720 NM_002271 3843 Hs.712598 NM_002271 HPRD:03597 IPO5 IMB3|KPNB3|Pse1|RANBP5|imp5 importin 5 protein-coding 13-PTNLD9-TUMOR_peak_43011 chr5 171741876 171742033 + 5.74189 NA Intergenic Intergenic -31159 NM_152277 92181 Hs.131570 NM_152277 HPRD:13118 UBTD2 DCUBP ubiquitin domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_41229 chr5 71766694 71766934 + 5.74189 NA intron (NM_152625, intron 1 of 4) intron (NM_152625, intron 1 of 4) 36435 NM_152625 167465 Hs.370303 NM_152625 HPRD:18329 ZNF366 DCSCRIPT zinc finger protein 366 protein-coding 13-PTNLD9-TUMOR_peak_17228 chr15 45926928 45927027 + 5.74189 NA promoter-TSS (NM_021199) promoter-TSS (NM_021199) 39 NM_021199 58472 Hs.511251 NM_021199 HPRD:18102 SQRDL PRO1975 sulfide quinone reductase-like (yeast) protein-coding 13-PTNLD9-TUMOR_peak_17716 chr15 77800352 77800543 + 5.74189 NA Intergenic Intergenic 87204 NM_018200 10363 Hs.69594 NM_018200 HPRD:16116 HMG20A HMGX1|HMGXB1 high mobility group 20A protein-coding 13-PTNLD9-TUMOR_peak_41651 chr5 102957056 102957150 + 5.74189 NA Intergenic L2c|LINE|L2 -58601 NM_031438 83594 Hs.434289 NM_031438 HPRD:10123 NUDT12 - nudix (nucleoside diphosphate linked moiety X)-type motif 12 protein-coding 13-PTNLD9-TUMOR_peak_2877 chr1 113044683 113044933 + 5.74189 NA intron (NM_004185, intron 2 of 5) CpG -6562 NM_024494 7482 Hs.258575 NM_004185 WNT2B WNT13 wingless-type MMTV integration site family, member 2B protein-coding 13-PTNLD9-TUMOR_peak_35536 chr3 121615838 121615932 + 5.74189 NA intron (NM_021082, intron 2 of 21) intron (NM_021082, intron 2 of 21) 2714 NM_021082 6565 Hs.518089 NM_021082 HPRD:09088 SLC15A2 PEPT2 solute carrier family 15 (oligopeptide transporter), member 2 protein-coding 13-PTNLD9-TUMOR_peak_29642 chr2 206701158 206701419 + 5.74189 NA Intergenic Intergenic 154064 NM_201264 8828 Hs.471200 NM_003872 HPRD:03643 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 13-PTNLD9-TUMOR_peak_36446 chr3 153546323 153546417 + 5.74189 NA Intergenic HERVH-int|LTR|ERV1 -292422 NM_001251962 26084 Hs.240845 NM_015595 HPRD:11554 ARHGEF26 CSGEF|HMFN1864|SGEF Rho guanine nucleotide exchange factor (GEF) 26 protein-coding 13-PTNLD9-TUMOR_peak_8484 chr10 123269708 123269802 + 5.74189 NA intron (NM_001144917, intron 7 of 15) intron (NM_001144917, intron 7 of 15) 83726 NM_001144913 2263 Hs.533683 NM_000141 HPRD:01492 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 13-PTNLD9-TUMOR_peak_12660 chr12 47359032 47359206 + 5.74189 NA Intergenic L2a|LINE|L2 -114267 NM_001281429 91523 Hs.560100 NM_138371 HPRD:17513 PCED1B FAM113B PC-esterase domain containing 1B protein-coding 13-PTNLD9-TUMOR_peak_4831 chr1 192873865 192873960 + 5.74189 NA Intergenic Intergenic 95743 NM_002923 5997 Hs.78944 NM_002923 HPRD:02917 RGS2 G0S8 regulator of G-protein signaling 2 protein-coding 13-PTNLD9-TUMOR_peak_1175 chr1 37942188 37942433 + 5.73989 NA intron (NM_025079, intron 2 of 5) intron (NM_025079, intron 2 of 5) 2191 NM_025079 80149 Hs.656294 NM_025079 HPRD:08021 ZC3H12A MCPIP|MCPIP1|dJ423B22.1 zinc finger CCCH-type containing 12A protein-coding 13-PTNLD9-TUMOR_peak_48653 chr7 102234475 102234685 + 5.73955 NA exon (NM_006989, exon 13 of 21) exon (NM_006989, exon 13 of 21) -21512 NM_001097615 548644 Hs.610255 NM_001015884 HPRD:18684 POLR2J3 POLR2J2|RPB11b1|RPB11b2 polymerase (RNA) II (DNA directed) polypeptide J3 protein-coding 13-PTNLD9-TUMOR_peak_10467 chr11 69842337 69842475 + 5.73932 NA Intergenic Charlie21a|DNA|hAT-Charlie 67624 NR_120530 101928443 Hs.313468 NR_120529 ENSG00000248844 LOC101928443 - uncharacterized LOC101928443 ncRNA 13-PTNLD9-TUMOR_peak_4997 chr1 201968834 201968980 + 5.73932 NA intron (NM_020216, intron 5 of 10) intron (NM_020216, intron 5 of 10) -3345 NR_106798 102465443 NR_106798 MIR6740 hsa-mir-6740 microRNA 6740 ncRNA 13-PTNLD9-TUMOR_peak_7255 chr10 47686816 47686915 + 5.73932 NA intron (NM_001278688, intron 16 of 16) intron (NM_001278688, intron 16 of 16) 28632 NM_001278688 195977 Hs.538515 NM_001278688 ENSG00000198250 ANTXRL - anthrax toxin receptor-like protein-coding 13-PTNLD9-TUMOR_peak_51148 chr8 74030569 74030801 + 5.73932 NA Intergenic Intergenic -25178 NM_153225 157869 Hs.439040 NM_153225 HPRD:15271 SBSPON C8orf84|RPESP somatomedin B and thrombospondin, type 1 domain containing protein-coding 13-PTNLD9-TUMOR_peak_11562 chr11 126618433 126618527 + 5.73932 NA intron (NM_001301097, intron 1 of 15) intron (NM_001301097, intron 1 of 15) 92499 NR_120533 101929427 Hs.600341 NR_120532 ENSG00000254607 LOC101929427 - uncharacterized LOC101929427 ncRNA 13-PTNLD9-TUMOR_peak_27117 chr2 65956092 65956207 + 5.73932 NA Intergenic MLT1J1|LTR|ERVL-MaLR -296493 NM_181784 200734 Hs.59332 NM_181784 HPRD:18100 SPRED2 Spred-2 sprouty-related, EVH1 domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_24707 chr19 34397247 34397348 + 5.73932 NA Intergenic CpG 109546 NM_024076 79047 Hs.221873 NM_024076 HPRD:13765 KCTD15 - potassium channel tetramerization domain containing 15 protein-coding 13-PTNLD9-TUMOR_peak_1433 chr1 43524366 43524465 + 5.73932 NA Intergenic Intergenic -89179 NM_001101376 440585 Hs.657614 NM_001101376 ENSG00000186973 FAM183A - family with sequence similarity 183, member A protein-coding 13-PTNLD9-TUMOR_peak_20012 chr16 86553790 86553902 + 5.73932 NA Intergenic Intergenic 9713 NM_001451 2294 Hs.155591 NM_001451 HPRD:03053 FOXF1 ACDMPV|FKHL5|FREAC1 forkhead box F1 protein-coding 13-PTNLD9-TUMOR_peak_37054 chr3 186173202 186173306 + 5.73932 NA non-coding (NR_033844, exon 7 of 8) non-coding (NR_033844, exon 7 of 8) 38196 NR_033844 253573 Hs.97386 NR_033844 ENSG00000224406 LOC253573 - uncharacterized LOC253573 ncRNA 13-PTNLD9-TUMOR_peak_12943 chr12 54973628 54973723 + 5.73932 NA TTS (NM_001165975) TTS (NM_001165975) 8768 NM_006741 5502 Hs.505662 NM_006741 HPRD:17893 PPP1R1A I1|IPP1 protein phosphatase 1, regulatory (inhibitor) subunit 1A protein-coding 13-PTNLD9-TUMOR_peak_5500 chr1 223263535 223263636 + 5.73932 NA Intergenic Intergenic 53039 NM_003268 7100 Hs.604542 NM_003268 HPRD:04326 TLR5 MELIOS|SLE1|SLEB1|TIL3 toll-like receptor 5 protein-coding 13-PTNLD9-TUMOR_peak_2902 chr1 113447678 113447789 + 5.73932 NA Intergenic Intergenic -18239 NR_002796 246182 Hs.647691 NR_002796 AKR7A2P1 AFARP1 aldo-keto reductase family 7, member A2 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_44281 chr6 27021587 27021783 + 5.73932 NA Intergenic Intergenic -33600 NR_026776 100270746 Hs.590428 NR_026776 LOC100270746 - uncharacterized LOC100270746 ncRNA 13-PTNLD9-TUMOR_peak_15927 chr14 60043521 60043615 + 5.73932 NA promoter-TSS (NM_001164399) promoter-TSS (NM_001164399) -19 NM_001164399 729665 Hs.29706 NM_001164399 ENSG00000151838 CCDC175 C14orf38|c14_5395 coiled-coil domain containing 175 protein-coding 13-PTNLD9-TUMOR_peak_7593 chr10 71087898 71087997 + 5.73932 NA intron (NM_000188, intron 1 of 17) intron (NM_000188, intron 1 of 17) 9344 NM_000188 3098 Hs.370365 NM_000188 HPRD:00809 HK1 HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1 hexokinase 1 protein-coding 13-PTNLD9-TUMOR_peak_7970 chr10 90342588 90342781 + 5.73932 NA intron (NM_001031709, intron 1 of 6) CpG 398 NM_018363 55328 Hs.149849 NM_018363 HPRD:07742 RNLS C10orf59|RENALASE renalase, FAD-dependent amine oxidase protein-coding 13-PTNLD9-TUMOR_peak_9878 chr11 57135894 57136189 + 5.73932 NA intron (NM_002559, intron 10 of 11) intron (NM_002559, intron 10 of 11) 12582 NM_006093 10394 Hs.251386 NM_006093 HPRD:08434 PRG3 MBP2|MBPH proteoglycan 3 protein-coding 13-PTNLD9-TUMOR_peak_5129 chr1 204183199 204183387 + 5.73932 NA promoter-TSS (NM_198447) promoter-TSS (NM_198447) -73 NM_198447 127845 Hs.532401 NM_198447 HPRD:13465 GOLT1A CGI-141|GOT1|HMFN1187|YMR292W golgi transport 1A protein-coding 13-PTNLD9-TUMOR_peak_37773 chr4 6472464 6472638 + 5.73932 NA intron (NM_001206995, intron 2 of 9) CpG 1775 NM_020416 5522 Hs.479069 NM_020416 HPRD:09345 PPP2R2C B55-GAMMA|IMYPNO|IMYPNO1|PR52|PR55G protein phosphatase 2, regulatory subunit B, gamma protein-coding 13-PTNLD9-TUMOR_peak_19792 chr16 75854721 75854815 + 5.73932 NA Intergenic MLT2F|LTR|ERVL 173133 NM_018975 54386 Hs.301419 NM_018975 HPRD:05452 TERF2IP DRIP5|RAP1 telomeric repeat binding factor 2, interacting protein protein-coding 13-PTNLD9-TUMOR_peak_7683 chr10 73358512 73358657 + 5.73775 NA intron (NM_001171930, intron 9 of 30) intron (NM_001171930, intron 9 of 30) -86907 NR_120672 102723377 Hs.568789 NR_120672 LOC102723377 - uncharacterized LOC102723377 ncRNA 13-PTNLD9-TUMOR_peak_21609 chr17 56161247 56161455 + 5.73775 NA promoter-TSS (NR_110809) promoter-TSS (NR_110809) 571 NM_080677 140735 Hs.720595 NM_080677 DYNLL2 DNCL1B|Dlc2|RSPH22 dynein, light chain, LC8-type 2 protein-coding 13-PTNLD9-TUMOR_peak_54330 chr9 109781615 109781726 + 5.73775 NA intron (NR_031752, intron 1 of 3) intron (NR_031752, intron 1 of 3) 67046 NR_031752 100313841 NR_031752 miRBase:MI0010637 MIR548Q - microRNA 548q ncRNA 13-PTNLD9-TUMOR_peak_19609 chr16 67881635 67881732 + 5.73775 NA promoter-TSS (NM_025082) promoter-TSS (NM_025082) -322 NM_025082 80152 Hs.288382 NM_025082 ENSG00000102901 CENPT C16orf56|CENP-T centromere protein T protein-coding 13-PTNLD9-TUMOR_peak_47330 chr7 43874511 43874618 + 5.73775 NA Intergenic Intergenic 34581 NM_032014 64951 Hs.284286 NM_032014 HPRD:17593 MRPS24 MRP-S24|S24mt|bMRP-47|bMRP47 mitochondrial ribosomal protein S24 protein-coding 13-PTNLD9-TUMOR_peak_15509 chr14 34459468 34459563 + 5.73775 NA Intergenic Intergenic -39231 NM_022073 112399 Hs.135507 NM_022073 HPRD:06972 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia-inducible factor 3 protein-coding 13-PTNLD9-TUMOR_peak_17776 chr15 81143292 81143426 + 5.73775 NA intron (NM_018689, intron 1 of 28) intron (NM_018689, intron 1 of 28) -8945 NR_030393 693132 NR_030393 miRBase:MI0003679 MIR549A MIR549|MIRN549|hsa-mir-549|hsa-mir-549a microRNA 549a ncRNA 13-PTNLD9-TUMOR_peak_40878 chr5 54472314 54472556 + 5.73775 NA Intergenic Intergenic -3430 NM_001170402 166979 Hs.669184 NM_152623 HPRD:13428 CDC20B - cell division cycle 20B protein-coding 13-PTNLD9-TUMOR_peak_33192 chr22 36484415 36484646 + 5.73775 NA Intergenic Intergenic -59945 NM_001082578 23543 Hs.282998 NM_014309 HPRD:15231 RBFOX2 FOX2|Fox-2|HNRBP2|HRNBP2|RBM9|RTA|dJ106I20.3|fxh RNA binding protein, fox-1 homolog (C. elegans) 2 protein-coding 13-PTNLD9-TUMOR_peak_46898 chr7 12130914 12131115 + 5.73775 NA Intergenic HERVL18-int|LTR|ERVL -119834 NM_001134232 54664 Hs.396358 NM_018374 TMEM106B - transmembrane protein 106B protein-coding 13-PTNLD9-TUMOR_peak_54017 chr9 95732704 95733015 + 5.73775 NA intron (NM_001286993, intron 1 of 17) LTR56|LTR|ERV1 -3859 NM_033086 89846 Hs.411081 NM_033086 HPRD:10957 FGD3 ZFYVE5 FYVE, RhoGEF and PH domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_2155 chr1 68559518 68559697 + 5.73775 NA intron (NR_040077, intron 3 of 9) intron (NR_040077, intron 3 of 9) -43147 NM_004675 9077 Hs.194695 NM_004675 HPRD:05547 DIRAS3 ARHI|NOEY2 DIRAS family, GTP-binding RAS-like 3 protein-coding 13-PTNLD9-TUMOR_peak_15625 chr14 43531966 43532137 + 5.73775 NA Intergenic L1PA2|LINE|L1 1444448 NM_032135 84075 Hs.307086 NM_032135 HPRD:12638 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 13-PTNLD9-TUMOR_peak_48508 chr7 100027305 100027481 + 5.73775 NA promoter-TSS (NM_017984) promoter-TSS (NM_017984) 139 NM_019606 56257 Hs.178011 NM_019606 HPRD:07889 MEPCE BCDIN3 methylphosphate capping enzyme protein-coding 13-PTNLD9-TUMOR_peak_18808 chr16 24187152 24187256 + 5.73775 NA intron (NM_212535, intron 12 of 16) AluJr|SINE|Alu -79670 NM_006539 10368 Hs.7235 NM_006539 HPRD:05910 CACNG3 - calcium channel, voltage-dependent, gamma subunit 3 protein-coding 13-PTNLD9-TUMOR_peak_32201 chr21 35574900 35575060 + 5.73775 NA Intergenic Intergenic 22002 NR_027266 114036 Hs.720230 NM_153751 ENSG00000227456 LINC00310 C21orf82|NCRNA00310 long intergenic non-protein coding RNA 310 ncRNA 13-PTNLD9-TUMOR_peak_32964 chr22 24912320 24912514 + 5.73775 NA intron (NM_016327, intron 6 of 9) intron (NM_016327, intron 6 of 9) 21166 NM_016327 51733 Hs.731656 NM_016327 HPRD:09451 UPB1 BUP1 ureidopropionase, beta protein-coding 13-PTNLD9-TUMOR_peak_27314 chr2 74699674 74699929 + 5.73775 NA TTS (NM_032779) TTS (NM_032779) 141 NM_053050 116540 Hs.534527 NM_053050 MRPL53 L53MT mitochondrial ribosomal protein L53 protein-coding 13-PTNLD9-TUMOR_peak_37453 chr3 196706568 196706673 + 5.73775 NA Intergenic Intergenic -10878 NM_025163 80235 Hs.518403 NM_025163 HPRD:18076 PIGZ GPI-MT-IV|PIG-Z|SMP3 phosphatidylinositol glycan anchor biosynthesis, class Z protein-coding 13-PTNLD9-TUMOR_peak_50310 chr8 22614838 22614969 + 5.73775 NA intron (NM_144962, intron 4 of 6) intron (NM_144962, intron 4 of 6) -64088 NM_004430 1960 Hs.534313 NM_004430 HPRD:03881 EGR3 EGR-3|PILOT early growth response 3 protein-coding 13-PTNLD9-TUMOR_peak_4109 chr1 160807855 160807958 + 5.73775 NA intron (NM_001166664, intron 4 of 7) intron (NM_001166664, intron 4 of 7) 24786 NM_001166664 51744 Hs.157872 NM_016382 HPRD:16121 CD244 2B4|NAIL|NKR2B4|Nmrk|SLAMF4 CD244 molecule, natural killer cell receptor 2B4 protein-coding 13-PTNLD9-TUMOR_peak_41306 chr5 74632221 74632319 + 5.73775 NA promoter-TSS (NM_000859) promoter-TSS (NM_000859) -723 NM_000859 3156 Hs.628096 NM_000859 HPRD:00836 HMGCR LDLCQ3 3-hydroxy-3-methylglutaryl-CoA reductase protein-coding 13-PTNLD9-TUMOR_peak_39846 chr4 170155738 170155834 + 5.73775 NA intron (NM_020870, intron 2 of 11) intron (NM_020870, intron 2 of 11) 36463 NM_020870 57630 Hs.301804 NM_020870 HPRD:15335 SH3RF1 POSH|RNF142|SH3MD2 SH3 domain containing ring finger 1 protein-coding 13-PTNLD9-TUMOR_peak_15485 chr14 32942779 32943036 + 5.73775 NA intron (NM_004274, intron 2 of 13) intron (NM_004274, intron 2 of 13) 144428 NM_004274 9472 Hs.509083 NM_004274 HPRD:05257 AKAP6 ADAP100|ADAP6|AKAP100|PRKA6|mAKAP A kinase (PRKA) anchor protein 6 protein-coding 13-PTNLD9-TUMOR_peak_21344 chr17 46129239 46129488 + 5.73271 NA intron (NM_003204, intron 2 of 5) intron (NM_003204, intron 2 of 5) 3677 NM_003204 4779 Hs.514284 NM_003204 HPRD:01223 NFE2L1 LCR-F1|NRF1|TCF11 nuclear factor, erythroid 2-like 1 protein-coding 13-PTNLD9-TUMOR_peak_43962 chr6 16766596 16766741 + 5.73271 NA Intergenic Intergenic -4947 NM_000332 6310 Hs.434961 NM_000332 HPRD:03333 ATXN1 ATX1|D6S504E|SCA1 ataxin 1 protein-coding 13-PTNLD9-TUMOR_peak_14110 chr12 122226400 122226517 + 5.73271 NA intron (NM_019034, intron 2 of 4) intron (NM_019034, intron 2 of 4) 5136 NM_019034 54509 Hs.644504 NM_019034 HPRD:15246 RHOF ARHF|RIF ras homolog family member F (in filopodia) protein-coding 13-PTNLD9-TUMOR_peak_18320 chr16 3332608 3332704 + 5.72603 NA promoter-TSS (NM_005741) promoter-TSS (NM_005741) -831 NM_005741 10127 Hs.611475 NM_005741 HPRD:05008 ZNF263 FPM315|ZKSCAN12|ZSCAN44 zinc finger protein 263 protein-coding 13-PTNLD9-TUMOR_peak_30927 chr20 35402583 35402853 + 5.72603 NA promoter-TSS (NM_001145317) promoter-TSS (NM_001145317) -488 NM_001145318 79980 Hs.632268 NM_024918 HPRD:16455 DSN1 C20orf172|KNL3|MIS13|dJ469A13.2|hKNL-3 DSN1, MIS12 kinetochore complex component protein-coding 13-PTNLD9-TUMOR_peak_23059 chr18 43902017 43902156 + 5.72603 NA Intergenic Intergenic -12101 NM_152470 494470 Hs.501114 NM_152470 ENSG00000141622 RNF165 ARKL2|RNF111L2 ring finger protein 165 protein-coding 13-PTNLD9-TUMOR_peak_22822 chr18 23671118 23671212 + 5.72520 NA promoter-TSS (NM_005637) promoter-TSS (NM_005637) -554 NM_005637 6760 Hs.129261 NM_005637 HPRD:02559 SS18 SSXT|SYT synovial sarcoma translocation, chromosome 18 protein-coding 13-PTNLD9-TUMOR_peak_25805 chr19 58741459 58741591 + 5.72520 NA intron (NM_014480, intron 2 of 6) intron (NM_014480, intron 2 of 6) 1455 NM_014480 27300 Hs.438994 NM_014480 HPRD:15830 ZNF544 - zinc finger protein 544 protein-coding 13-PTNLD9-TUMOR_peak_5248 chr1 206277713 206277807 + 5.72520 NA intron (NM_001007544, intron 1 of 5) SVA_D|Other|Other 10887 NM_001007544 440712 Hs.662248 NM_001007544 C1orf186 - chromosome 1 open reading frame 186 protein-coding 13-PTNLD9-TUMOR_peak_49411 chr7 141402064 141402353 + 5.72520 NA promoter-TSS (NM_001080392) promoter-TSS (NM_001080392) -255 NM_001080392 57189 Hs.521240 NM_001080392 ENSG00000257093 KIAA1147 LCHN|PRO2561 KIAA1147 protein-coding 13-PTNLD9-TUMOR_peak_36679 chr3 169950236 169950427 + 5.72520 NA intron (NM_002740, intron 1 of 17) intron (NM_002740, intron 1 of 17) 10111 NM_002740 5584 Hs.478199 NM_002740 HPRD:02105 PRKCI DXS1179E|PKCI|nPKC-iota protein kinase C, iota protein-coding 13-PTNLD9-TUMOR_peak_33338 chr22 41776986 41777162 + 5.72144 NA promoter-TSS (NM_003216) promoter-TSS (NM_003216) -859 NM_003216 7008 Hs.181159 NM_003216 HPRD:01783 TEF - thyrotrophic embryonic factor protein-coding 13-PTNLD9-TUMOR_peak_47860 chr7 72733576 72733883 + 5.72144 NA intron (NM_001281451, intron 3 of 6) intron (NM_001281451, intron 3 of 6) 5850 NM_001281451 135892 Hs.647053 NM_178125 HPRD:15566 TRIM50 TRIM50A tripartite motif containing 50 protein-coding 13-PTNLD9-TUMOR_peak_44764 chr6 35327854 35328007 + 5.72144 NA intron (NM_001171819, intron 2 of 6) intron (NM_001171819, intron 2 of 6) 17595 NM_177435 5467 Hs.696032 NM_006238 HPRD:02679 PPARD FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB peroxisome proliferator-activated receptor delta protein-coding 13-PTNLD9-TUMOR_peak_18771 chr16 23157089 23157230 + 5.72144 NA intron (NM_020718, intron 1 of 15) MLT1L|LTR|ERVL-MaLR 3432 NM_020718 57478 Hs.183817 NM_020718 HPRD:15634 USP31 - ubiquitin specific peptidase 31 protein-coding 13-PTNLD9-TUMOR_peak_40414 chr5 16493495 16493594 + 5.72144 NA intron (NM_001034850, intron 3 of 8) intron (NM_001034850, intron 3 of 8) 15563 NM_019000 54463 Hs.481704 NM_019000 HPRD:07879 FAM134B JK-1|JK1 family with sequence similarity 134, member B protein-coding 13-PTNLD9-TUMOR_peak_30433 chr20 11872072 11872196 + 5.72144 NA intron (NM_001282552, intron 1 of 3) CpG 763 NM_181443 22903 Hs.709366 NM_014962 HPRD:12538 BTBD3 dJ742J24.1 BTB (POZ) domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_2684 chr1 104291007 104291200 + 5.72131 NA Intergenic HERVE_a-int|LTR|ERV1 -1176 NM_001008221 276 Hs.655232 NM_004038 HPRD:00096 AMY1A AMY1 amylase, alpha 1A (salivary) protein-coding 13-PTNLD9-TUMOR_peak_20421 chr17 8021794 8021940 + 5.71764 NA promoter-TSS (NM_021628) promoter-TSS (NM_021628) -7 NM_021628 59344 Hs.232770 NM_021628 HPRD:06231 ALOXE3 ARCI3|E-LOX|eLOX-3|eLOX3 arachidonate lipoxygenase 3 protein-coding 13-PTNLD9-TUMOR_peak_1507 chr1 44395365 44395459 + 5.71764 NA intron (NR_073016, intron 11 of 11) intron (NR_073016, intron 11 of 11) -3580 NM_001136215 9048 Hs.632404 NM_003976 HPRD:04863 ARTN ENOVIN|EVN|NBN artemin protein-coding 13-PTNLD9-TUMOR_peak_9516 chr11 34653324 34653519 + 5.71539 NA promoter-TSS (NM_001206616) promoter-TSS (NM_001206616) -590 NM_001206616 26298 Hs.653859 NM_012153 EHF ESE3|ESE3B|ESEJ ets homologous factor protein-coding 13-PTNLD9-TUMOR_peak_6951 chr10 36072059 36072424 + 5.71314 NA intron (NR_110138, intron 1 of 2) intron (NR_110138, intron 1 of 2) 5011 NR_110138 102578074 NR_110138 LINC01452 PCAT5|TPCAT-10-36067 long intergenic non-protein coding RNA 1452 ncRNA 13-PTNLD9-TUMOR_peak_45122 chr6 44002789 44002921 + 5.71314 NA Intergenic Intergenic 34518 NM_153246 221416 Hs.531926 NM_153246 HPRD:14640 C6orf223 - chromosome 6 open reading frame 223 protein-coding 13-PTNLD9-TUMOR_peak_48816 chr7 108257515 108257765 + 5.71314 NA Intergenic Intergenic -47428 NM_001287599 168451 Hs.707689 NM_182529 HPRD:15498 THAP5 - THAP domain containing 5 protein-coding 13-PTNLD9-TUMOR_peak_46266 chr6 149886830 149886955 + 5.71314 NA promoter-TSS (NM_138785) promoter-TSS (NM_138785) -636 NM_138785 116254 Hs.438872 NM_138785 GINM1 C6orf72|dJ12G14.2 glycoprotein integral membrane 1 protein-coding 13-PTNLD9-TUMOR_peak_17603 chr15 72492163 72492260 + 5.71314 NA intron (NM_182470, intron 10 of 10) intron (NM_182470, intron 10 of 10) -2075 NM_001012642 196996 Hs.596332 NM_001012642 HPRD:13161 GRAMD2 - GRAM domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_22644 chr18 12702599 12702773 + 5.71314 NA promoter-TSS (NM_020232) promoter-TSS (NM_020232) 90 NR_073537 79959 Hs.236940 NM_024899 HPRD:12694 CEP76 C18orf9|HsT1705 centrosomal protein 76kDa protein-coding 13-PTNLD9-TUMOR_peak_22127 chr17 75792697 75792928 + 5.71314 NA Intergenic Intergenic -68171 NR_104134 100132174 Hs.640110 NR_104134 LOC100132174 - uncharacterized LOC100132174 ncRNA 13-PTNLD9-TUMOR_peak_23319 chr18 56930978 56931099 + 5.71314 NA Intergenic Intergenic 9587 NM_013435 30062 Hs.278957 NM_013435 HPRD:03530 RAX MCOP3|RX retina and anterior neural fold homeobox protein-coding 13-PTNLD9-TUMOR_peak_15270 chr14 21660155 21660343 + 5.71314 NA Intergenic MER52A|LTR|ERV1 13413 NR_038970 283624 Hs.525210 NR_038970 ENSG00000258441 LINC00641 - long intergenic non-protein coding RNA 641 ncRNA 13-PTNLD9-TUMOR_peak_27997 chr2 110673490 110673607 + 5.71314 NA non-coding (NR_038099, exon 4 of 9) non-coding (NR_038099, exon 4 of 9) 17539 NM_033514 96626 Hs.535619 NM_033514 HPRD:17277 LIMS3 PINCH-3 LIM and senescent cell antigen-like domains 3 protein-coding 13-PTNLD9-TUMOR_peak_6232 chr10 384977 385099 + 5.71314 NA intron (NM_014974, intron 29 of 36) intron (NM_014974, intron 29 of 36) 159104 NM_001202468 10771 Hs.292265 NM_006624 HPRD:09830 ZMYND11 BRAM1|BS69 zinc finger, MYND-type containing 11 protein-coding 13-PTNLD9-TUMOR_peak_16420 chr14 90560564 90560870 + 5.70444 NA intron (NM_022054, intron 1 of 1) intron (NM_022054, intron 1 of 1) 32608 NM_022054 56659 Hs.510191 NM_022054 HPRD:09563 KCNK13 K2p13.1|THIK-1|THIK1 potassium channel, subfamily K, member 13 protein-coding 13-PTNLD9-TUMOR_peak_54053 chr9 97401407 97401546 + 5.70444 NA exon (NM_000507, exon 1 of 7) exon (NM_000507, exon 1 of 7) 447 NM_000507 2203 Hs.494496 NM_000507 HPRD:01973 FBP1 FBP fructose-1,6-bisphosphatase 1 protein-coding 13-PTNLD9-TUMOR_peak_39481 chr4 142076867 142076981 + 5.70444 NA Intergenic MER49|LTR|ERV1 -22308 NM_020724 57484 Hs.659104 NM_020724 HPRD:15258 RNF150 - ring finger protein 150 protein-coding 13-PTNLD9-TUMOR_peak_15788 chr14 53684534 53684637 + 5.70444 NA Intergenic LTR12C|LTR|ERV1 64513 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 13-PTNLD9-TUMOR_peak_14329 chr12 131913742 131914045 + 5.70444 NA Intergenic Intergenic 81878 NR_103736 338797 Hs.592007 NM_001025466 LOC338797 - uncharacterized LOC338797 ncRNA 13-PTNLD9-TUMOR_peak_41313 chr5 74936424 74936529 + 5.70444 NA intron (NM_001276713, intron 7 of 13) intron (NM_001276713, intron 7 of 13) 29175 NM_001276713 728780 Hs.370455 NM_001271529 ENSG00000189045 ANKDD1B - ankyrin repeat and death domain containing 1B protein-coding 13-PTNLD9-TUMOR_peak_52083 chr8 131465942 131466080 + 5.70444 NA Intergenic Intergenic -10105 NM_018482 50807 Hs.655552 NM_018482 HPRD:05809 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 13-PTNLD9-TUMOR_peak_36476 chr3 155948174 155948301 + 5.70444 NA intron (NM_003471, intron 1 of 13) Tigger3a|DNA|TcMar-Tigger -2565 NR_046617 100874083 Hs.603823 NR_046617 ENSG00000240596 KCNAB1-AS2 - KCNAB1 antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_10040 chr11 61849142 61849247 + 5.70444 NA Intergenic Intergenic -42251 NM_001040694 3619 Hs.142179 NM_020238 HPRD:05103 INCENP - inner centromere protein antigens 135/155kDa protein-coding 13-PTNLD9-TUMOR_peak_53626 chr9 75057323 75057417 + 5.70444 NA Intergenic Intergenic -77207 NM_006007 7763 Hs.406096 NM_006007 HPRD:05302 ZFAND5 ZA20D2|ZFAND5A|ZNF216 zinc finger, AN1-type domain 5 protein-coding 13-PTNLD9-TUMOR_peak_24410 chr19 18589855 18590008 + 5.70444 NA intron (NM_006532, intron 1 of 11) intron (NM_006532, intron 1 of 11) -40820 NM_001170938 51477 Hs.405873 NM_016368 HPRD:17163 ISYNA1 INO1|INOS|IPS|IPS 1|IPS-1 inositol-3-phosphate synthase 1 protein-coding 13-PTNLD9-TUMOR_peak_53943 chr9 92250996 92251161 + 5.70444 NA Intergenic Intergenic -3620 NR_024280 100129066 Hs.125947 NR_024280 UNQ6494 - uncharacterized LOC100129066 ncRNA 13-PTNLD9-TUMOR_peak_2641 chr1 100654250 100654505 + 5.70444 NA 3' UTR (NM_001918, exon 11 of 11) 3' UTR (NM_001918, exon 11 of 11) -10548 NM_001256385 127495 Hs.44277 NM_144620 HPRD:17501 LRRC39 - leucine rich repeat containing 39 protein-coding 13-PTNLD9-TUMOR_peak_16583 chr14 100807717 100807908 + 5.70444 NA intron (NM_173701, intron 9 of 10) intron (NM_173701, intron 9 of 10) 18133 NM_207117 283600 Hs.108268 NM_207117 HPRD:16620 SLC25A47 C14orf68|HDMCP solute carrier family 25, member 47 protein-coding 13-PTNLD9-TUMOR_peak_33231 chr22 37988606 37988721 + 5.70444 NA Intergenic AluSx|SINE|Alu -12639 NM_006498 3957 Hs.531776 NM_006498 HPRD:08859 LGALS2 HL14 lectin, galactoside-binding, soluble, 2 protein-coding 13-PTNLD9-TUMOR_peak_3643 chr1 151809047 151809144 + 5.70371 NA Intergenic Intergenic -1850 NR_024237 100132111 Hs.697059 NR_024237 LOC100132111 - uncharacterized LOC100132111 ncRNA 13-PTNLD9-TUMOR_peak_11961 chr12 6421864 6421978 + 5.70371 NA 5' UTR (NM_001144857, exon 1 of 15) 5' UTR (NM_001144857, exon 1 of 15) 104 NM_001144857 55200 Hs.631660 NM_018173 HPRD:07692 PLEKHG6 MyoGEF pleckstrin homology domain containing, family G (with RhoGef domain) member 6 protein-coding 13-PTNLD9-TUMOR_peak_44390 chr6 28948689 28949086 + 5.70323 NA Intergenic LTR7C|LTR|ERV1 24150 NM_001010877 282890 Hs.148218 NM_001010877 HPRD:18325 ZNF311 zf31 zinc finger protein 311 protein-coding 13-PTNLD9-TUMOR_peak_22496 chr18 5296914 5297021 + 5.70274 NA promoter-TSS (NM_003409) promoter-TSS (NM_003409) 85 NM_001243704 7541 Hs.592340 NM_003409 HPRD:03674 ZBTB14 ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478 zinc finger and BTB domain containing 14 protein-coding 13-PTNLD9-TUMOR_peak_32520 chr21 45432087 45432222 + 5.70274 NA promoter-TSS (NM_003274) promoter-TSS (NM_003274) -52 NM_003274 7109 Hs.126221 NM_003274 HPRD:03656 TRAPPC10 EHOC-1|EHOC1|GT334|TMEM1|TRS130|TRS30 trafficking protein particle complex 10 protein-coding 13-PTNLD9-TUMOR_peak_2776 chr1 110160098 110160223 + 5.70274 NA Intergenic Intergenic -2275 NM_001257360 271 Hs.82927 NM_004037 HPRD:11808 AMPD2 PCH9|SPG63 adenosine monophosphate deaminase 2 protein-coding 13-PTNLD9-TUMOR_peak_17080 chr15 40633056 40633246 + 5.70274 NA promoter-TSS (NM_207380) promoter-TSS (NM_207380) 17 NM_207380 388115 Hs.32433 NM_207380 HPRD:16964 C15orf52 - chromosome 15 open reading frame 52 protein-coding 13-PTNLD9-TUMOR_peak_20440 chr17 8288537 8288643 + 5.70274 NA Intergenic Intergenic -2025 NM_000987 6154 Hs.482144 NM_000987 HPRD:04746 RPL26 DBA11|L26 ribosomal protein L26 protein-coding 13-PTNLD9-TUMOR_peak_50928 chr8 53030269 53030368 + 5.70211 NA intron (NM_014682, intron 24 of 25) intron (NM_014682, intron 24 of 25) -218572 NM_001286783 115294 Hs.671268 NM_052937 HPRD:08313 PCMTD1 - protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_22511 chr18 7006000 7006201 + 5.70211 NA intron (NM_005559, intron 29 of 62) intron (NM_005559, intron 29 of 62) -76232 NR_034100 400643 Hs.253920 NM_001103383 ENSG00000265933 LINC00668 - long intergenic non-protein coding RNA 668 ncRNA 13-PTNLD9-TUMOR_peak_13358 chr12 73815763 73815866 + 5.70211 NA Intergenic Intergenic 262844 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LOC101928137 - uncharacterized LOC101928137 ncRNA 13-PTNLD9-TUMOR_peak_14321 chr12 131639423 131639517 + 5.70211 NA Intergenic Intergenic -10086 NR_026670 116437 Hs.675497 NR_026670 ENSG00000204603 LINC01257 - long intergenic non-protein coding RNA 1257 ncRNA 13-PTNLD9-TUMOR_peak_10704 chr11 76819174 76819285 + 5.70211 NA intron (NM_004055, intron 3 of 12) intron (NM_004055, intron 3 of 12) 5343 NM_006189 4975 Hs.673853 NM_006189 HPRD:01254 OMP - olfactory marker protein protein-coding 13-PTNLD9-TUMOR_peak_51167 chr8 75860669 75860822 + 5.70211 NA Intergenic L1PA2|LINE|L1 -35963 NM_031461 83690 Hs.436542 NM_031461 HPRD:16756 CRISPLD1 CRISP-10|CRISP10|LCRISP1 cysteine-rich secretory protein LCCL domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_12584 chr12 41915723 41915852 + 5.70211 NA intron (NM_001164595, intron 5 of 9) intron (NM_001164595, intron 5 of 9) 84246 NM_013377 29951 Hs.380044 NM_013377 HPRD:15116 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 13-PTNLD9-TUMOR_peak_5845 chr1 232786299 232786393 + 5.70211 NA Intergenic MLT1L|LTR|ERVL-MaLR 92115 NR_110683 101927683 Hs.520568 NR_110683 ENSG00000236497 LOC101927683 - uncharacterized LOC101927683 ncRNA 13-PTNLD9-TUMOR_peak_50488 chr8 29144670 29144836 + 5.70211 NA Intergenic MER5B|DNA|hAT-Charlie -24143 NM_015254 23303 Hs.444767 NM_015254 HPRD:09556 KIF13B GAKIN kinesin family member 13B protein-coding 13-PTNLD9-TUMOR_peak_23627 chr19 1479118 1479344 + 5.70211 NA promoter-TSS (NM_152482) promoter-TSS (NM_152482) -3 NM_152482 148223 Hs.532840 NM_152482 HPRD:12703 C19orf25 - chromosome 19 open reading frame 25 protein-coding 13-PTNLD9-TUMOR_peak_56513 chrX 132787484 132787631 + 5.70211 NA intron (NM_001164618, intron 6 of 7) intron (NM_001164618, intron 6 of 7) -238352 NM_001448 2239 Hs.58367 NM_001448 GPC4 K-glypican glypican 4 protein-coding 13-PTNLD9-TUMOR_peak_45916 chr6 112294632 112294847 + 5.70211 NA Intergenic Intergenic -80539 NM_003880 8838 Hs.558428 NM_003880 HPRD:04550 WISP3 CCN6|LIBC|PPAC|PPD WNT1 inducible signaling pathway protein 3 protein-coding 13-PTNLD9-TUMOR_peak_55703 chrX 34271470 34271649 + 5.70211 NA Intergenic L1PA2|LINE|L1 -121112 NM_203408 158724 Hs.143268 NM_203408 HPRD:10947 FAM47A - family with sequence similarity 47, member A protein-coding 13-PTNLD9-TUMOR_peak_41285 chr5 73839513 73839607 + 5.70211 NA Intergenic Intergenic -96288 NM_001292004 3074 Hs.69293 NM_000521 HPRD:06043 HEXB ENC-1AS|HEL-248 hexosaminidase B (beta polypeptide) protein-coding 13-PTNLD9-TUMOR_peak_34419 chr3 45698399 45698493 + 5.70211 NA intron (NM_014240, intron 2 of 7) intron (NM_014240, intron 2 of 7) 31928 NR_033947 644714 Hs.712889 NR_033947 LIMD1-AS1 - LIMD1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_34979 chr3 73002935 73003116 + 5.70211 NA intron (NM_001080393, intron 3 of 6) AluJr|SINE|Alu -43094 NM_174907 151987 Hs.431092 NM_174907 HPRD:11453 PPP4R2 PP4R2 protein phosphatase 4, regulatory subunit 2 protein-coding 13-PTNLD9-TUMOR_peak_5079 chr1 203409983 203410230 + 5.70211 NA Intergenic Intergenic -34777 NM_002725 5549 Hs.632481 NM_002725 HPRD:03556 PRELP MST161|MSTP161|SLRR2A proline/arginine-rich end leucine-rich repeat protein protein-coding 13-PTNLD9-TUMOR_peak_37305 chr3 194003223 194003387 + 5.70211 NA Intergenic Intergenic 27288 NR_024480 100131551 Hs.128066 NR_024480 ENSG00000214145 LINC00887 - long intergenic non-protein coding RNA 887 ncRNA 13-PTNLD9-TUMOR_peak_47003 chr7 20554062 20554230 + 5.70211 NA Intergenic Intergenic -101099 NM_001163941 340273 Hs.404102 NM_178559 ENSG00000004846 ABCB5 ABCB5alpha|ABCB5beta|EST422562 ATP-binding cassette, sub-family B (MDR/TAP), member 5 protein-coding 13-PTNLD9-TUMOR_peak_10842 chr11 86334440 86334605 + 5.70211 NA intron (NM_001014811, intron 1 of 13) MLT2B2|LTR|ERVL 48718 NM_001014811 10873 Hs.199743 NM_006680 HPRD:06862 ME3 NADP-ME malic enzyme 3, NADP(+)-dependent, mitochondrial protein-coding 13-PTNLD9-TUMOR_peak_8191 chr10 103453824 103454105 + 5.70211 NA intron (NM_022039, intron 1 of 8) intron (NM_022039, intron 1 of 8) 779 NM_022039 6468 Hs.500822 NM_022039 HPRD:06994 FBXW4 DAC|FBW4|FBWD4|SHFM3|SHSF3 F-box and WD repeat domain containing 4 protein-coding 13-PTNLD9-TUMOR_peak_26601 chr2 37879302 37879417 + 5.70211 NA intron (NM_001270436, intron 1 of 1) intron (NM_001270436, intron 1 of 1) 19983 NM_006449 10602 Hs.369574 NM_006449 HPRD:09364 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein (Rho GTPase binding) 3 protein-coding 13-PTNLD9-TUMOR_peak_45040 chr6 42670091 42670234 + 5.70211 NA intron (NM_000322, intron 2 of 2) intron (NM_000322, intron 2 of 2) 20196 NM_000322 5961 Hs.654489 NM_000322 HPRD:01553 PRPH2 AOFMD|AVMD|CACD2|DS|PRPH|RDS|RP7|TSPAN22|rd2 peripherin 2 (retinal degeneration, slow) protein-coding 13-PTNLD9-TUMOR_peak_37236 chr3 191607742 191607836 + 5.70211 NA Intergenic Intergenic -348630 NR_046596 100873986 Hs.581652 NR_046596 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_27545 chr2 88800248 88800500 + 5.70211 NA Intergenic Intergenic -23795 NM_152670 200523 Hs.132104 NM_152670 HPRD:08688 TEX37 C2orf51|TSC21 testis expressed 37 protein-coding 13-PTNLD9-TUMOR_peak_1783 chr1 52754149 52754287 + 5.70211 NA intron (NM_004799, intron 10 of 18) intron (NM_004799, intron 10 of 18) 77659 NM_032449 200014 Hs.591451 NM_032449 HPRD:12393 CC2D1B - coiled-coil and C2 domain containing 1B protein-coding 13-PTNLD9-TUMOR_peak_54111 chr9 99102085 99102203 + 5.70211 NA intron (NR_104627, intron 8 of 12) intron (NR_104627, intron 8 of 12) -37710 NM_000197 3293 Hs.477 NM_000197 HPRD:05716 HSD17B3 EDH17B3|SDR12C2 hydroxysteroid (17-beta) dehydrogenase 3 protein-coding 13-PTNLD9-TUMOR_peak_18854 chr16 27444057 27444203 + 5.70211 NA intron (NM_181078, intron 2 of 8) MER117|DNA|hAT-Charlie 5551 NM_021798 50615 Hs.210546 NM_021798 IL21R CD360|NILR interleukin 21 receptor protein-coding 13-PTNLD9-TUMOR_peak_12587 chr12 42326345 42326566 + 5.70211 NA Intergenic Intergenic 212218 NM_001099650 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_48706 chr7 104619938 104620119 + 5.69845 NA Intergenic Intergenic 11584 NR_039981 100216546 Hs.369356 NR_039981 LINC01004 - long intergenic non-protein coding RNA 1004 ncRNA 13-PTNLD9-TUMOR_peak_34494 chr3 48466604 48466732 + 5.69845 NA intron (NM_002673, intron 2 of 37) intron (NM_002673, intron 2 of 37) 4204 NM_002673 5364 Hs.476209 NM_002673 HPRD:03032 PLXNB1 PLEXIN-B1|PLXN5|SEP plexin B1 protein-coding 13-PTNLD9-TUMOR_peak_36350 chr3 149293482 149293576 + 5.69845 NA intron (NM_015472, intron 2 of 6) intron (NM_015472, intron 2 of 6) 82283 NM_001168280 25937 Hs.477921 NM_015472 HPRD:09580 WWTR1 TAZ WW domain containing transcription regulator 1 protein-coding 13-PTNLD9-TUMOR_peak_21915 chr17 71288274 71288488 + 5.69614 NA intron (NM_012121, intron 1 of 1) intron (NM_012121, intron 1 of 1) 19762 NM_012121 23580 Hs.3903 NM_012121 HPRD:08383 CDC42EP4 BORG4|CEP4|KAIA1777 CDC42 effector protein (Rho GTPase binding) 4 protein-coding 13-PTNLD9-TUMOR_peak_1121 chr1 36534595 36534747 + 5.69614 NA Intergenic MIRc|SINE|MIR -15005 NM_014466 27285 Hs.127111 NM_014466 HPRD:16410 TEKT2 TEKTB1|TEKTIN-T|h-tektin-t tektin 2 (testicular) protein-coding 13-PTNLD9-TUMOR_peak_2846 chr1 111991219 111991314 + 5.69614 NA promoter-TSS (NM_001688) promoter-TSS (NM_001688) -477 NM_001688 515 Hs.514870 NM_001688 ATP5F1 PIG47 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1 protein-coding 13-PTNLD9-TUMOR_peak_29894 chr2 222438185 222438448 + 5.69614 NA Intergenic CpG-16010 -1306 NM_004438 2043 Hs.371218 NM_004438 HPRD:03719 EPHA4 HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 13-PTNLD9-TUMOR_peak_25357 chr19 49636939 49637142 + 5.69614 NA intron (NM_003660, intron 9 of 29) intron (NM_003660, intron 9 of 29) 14394 NR_103842 8541 Hs.413748 NM_003660 HPRD:04393 PPFIA3 LPNA3 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3 protein-coding 13-PTNLD9-TUMOR_peak_14867 chr13 76119235 76119395 + 5.69614 NA intron (NM_001287394, intron 1 of 2) intron (NM_001287394, intron 1 of 2) 4260 NM_001287394 170622 Hs.508266 NM_203495 HPRD:13084 COMMD6 Acrg COMM domain containing 6 protein-coding 13-PTNLD9-TUMOR_peak_25656 chr19 55476640 55476744 + 5.69614 NA promoter-TSS (NM_001174081) promoter-TSS (NM_001174081) 40 NM_001174081 55655 Hs.369279 NM_017852 HPRD:14805 NLRP2 CLR19.9|NALP2|NBS1|PAN1|PYPAF2 NLR family, pyrin domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_48046 chr7 75993990 75994107 + 5.69614 NA Intergenic Intergenic -5706 NM_012479 7532 Hs.744840 NM_012479 HPRD:05639 YWHAG 14-3-3GAMMA|PPP1R170 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma protein-coding 13-PTNLD9-TUMOR_peak_53399 chr9 66493157 66493385 + 5.69442 NA promoter-TSS (NR_024496) promoter-TSS (NR_024496) -998 NR_024496 442421 Hs.585349 NR_024496 PTGER4P2-CDK2AP2P2 PTGER4P2 PTGER4P2-CDK2AP2P2 readthrough transcribed pseudogene pseudo 13-PTNLD9-TUMOR_peak_1619 chr1 46712656 46712765 + 5.68482 NA promoter-TSS (NM_003579) promoter-TSS (NM_003579) -657 NM_001142548 8438 Hs.642042 NM_003579 HPRD:04683 RAD54L HR54|RAD54A|hHR54|hRAD54 RAD54-like (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_16961 chr15 32720020 32720160 + 5.68482 NA intron (NR_026859, intron 2 of 4).2 intron (NR_026859, intron 2 of 4).2 6975 NR_026859 89837 Hs.510848 NR_026859 ENSG00000178081 ULK4P3 D-X|FAM7A3 ULK4 pseudogene 3 pseudo 13-PTNLD9-TUMOR_peak_47903 chr7 73300944 73301096 + 5.68459 NA Intergenic Intergenic 25531 NM_182504 135886 Hs.647026 NM_182504 HPRD:15662 WBSCR28 - Williams-Beuren syndrome chromosome region 28 protein-coding 13-PTNLD9-TUMOR_peak_14241 chr12 125313149 125313401 + 5.68459 NA intron (NM_001082959, intron 1 of 11) intron (NM_001082959, intron 1 of 11) 35244 NM_005505 949 Hs.731377 NM_005505 HPRD:03024 SCARB1 CD36L1|CLA-1|CLA1|HDLQTL6|SR-BI|SRB1 scavenger receptor class B, member 1 protein-coding 13-PTNLD9-TUMOR_peak_25748 chr19 57183159 57183457 + 5.68459 NA promoter-TSS (NM_001005850) promoter-TSS (NM_001005850) -185 NM_001005850 90485 Hs.458438 NM_001005850 HPRD:12521 ZNF835 BC37295_3 zinc finger protein 835 protein-coding 13-PTNLD9-TUMOR_peak_23305 chr18 56358645 56358754 + 5.68459 NA intron (NM_006785, intron 2 of 16) intron (NM_006785, intron 2 of 16) -19594 NM_001289967 101927322 Hs.644875 NM_001289967 LOC101927322 - uncharacterized LOC101927322 protein-coding 13-PTNLD9-TUMOR_peak_34915 chr3 69343341 69343448 + 5.68459 NA intron (NM_015123, intron 4 of 22) intron (NM_015123, intron 4 of 22) 92061 NM_015123 23150 Hs.371681 NM_015123 ENSG00000114541 FRMD4B 6030440G05Rik|GRSP1 FERM domain containing 4B protein-coding 13-PTNLD9-TUMOR_peak_43646 chr6 6725138 6725453 + 5.68459 NA Intergenic Intergenic -102236 NR_026970 285780 Hs.655737 NM_173675 HPRD:08165 LY86-AS1 LY86-AS|LY86AS LY86 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_18797 chr16 23832492 23832622 + 5.68459 NA Intergenic MLT1L|LTR|ERVL-MaLR -14743 NM_002738 5579 Hs.460355 NM_002738 HPRD:01499 PRKCB PKC-beta|PKCB|PRKCB1|PRKCB2 protein kinase C, beta protein-coding 13-PTNLD9-TUMOR_peak_37098 chr3 186904662 186904766 + 5.68459 NA Intergenic Intergenic -10560 NM_153708 132112 Hs.518480 NM_153708 HPRD:16449 RTP1 Z3CXXC1 receptor (chemosensory) transporter protein 1 protein-coding 13-PTNLD9-TUMOR_peak_39145 chr4 117848110 117848221 + 5.68459 NA Intergenic Intergenic 158571 NM_152402 133022 Hs.570737 NM_152402 HPRD:11643 TRAM1L1 - translocation associated membrane protein 1-like 1 protein-coding 13-PTNLD9-TUMOR_peak_22680 chr18 14450666 14450840 + 5.68459 NA Intergenic CpG 47952 NR_024076 440224 Hs.721675 NR_024076 ENSG00000265766 CXADRP3 - coxsackie virus and adenovirus receptor pseudogene 3 pseudo 13-PTNLD9-TUMOR_peak_42004 chr5 130648524 130648735 + 5.68459 NA intron (NM_001038702, intron 1 of 4) L1PA3|LINE|L1 48927 NM_020240 56990 Hs.508829 NM_020240 HPRD:16695 CDC42SE2 SPEC2 CDC42 small effector 2 protein-coding 13-PTNLD9-TUMOR_peak_13680 chr12 106022071 106022325 + 5.68459 NA Intergenic L1PA2|LINE|L1 -75783 NR_110108 101929110 Hs.145944 NR_110108 ENSG00000257859 CASC18 - cancer susceptibility candidate 18 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_42525 chr5 146947588 146947790 + 5.68459 NA intron (NR_038902, intron 1 of 3) intron (NR_038902, intron 1 of 3) 8132 NR_038902 153469 Hs.184323 NR_038902 JAKMIP2-AS1 - JAKMIP2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_2725 chr1 109203498 109204065 + 5.68459 NA promoter-TSS (NM_001102592) promoter-TSS (NM_001102592) -37 NM_001102592 113802 Hs.7962 NM_144584 HPRD:08086 HENMT1 C1orf59|HEN1 HEN1 methyltransferase homolog 1 (Arabidopsis) protein-coding 13-PTNLD9-TUMOR_peak_22005 chr17 73606915 73607105 + 5.68459 NA intron (NR_003587, intron 21 of 60) intron (NR_003587, intron 21 of 60) -22504 NM_001162995 643008 Hs.528605 NM_001162995 ENSG00000204323 SMIM5 C17orf109|PP12104 small integral membrane protein 5 protein-coding 13-PTNLD9-TUMOR_peak_23549 chr18 77724503 77724660 + 5.68257 NA promoter-TSS (NM_001136180) promoter-TSS (NM_001136180) -1 NM_001136180 440498 Hs.191582 NM_001136180 ENSG00000226742 HSBP1L1 - heat shock factor binding protein 1-like 1 protein-coding 13-PTNLD9-TUMOR_peak_38990 chr4 103681878 103682222 + 5.67946 NA exon (NM_005908, exon 1 of 17) exon (NM_005908, exon 1 of 17) 101 NM_005908 4126 Hs.480415 NM_005908 HPRD:02008 MANBA MANB1 mannosidase, beta A, lysosomal protein-coding 13-PTNLD9-TUMOR_peak_33292 chr22 39686416 39686599 + 5.67946 NA Intergenic Intergenic 23409 NR_000028 116938 NR_000028 SNORD83B RNU83B|U83B small nucleolar RNA, C/D box 83B snoRNA 13-PTNLD9-TUMOR_peak_26039 chr2 9320035 9320243 + 5.67946 NA Intergenic Intergenic -26755 NM_001135191 8853 Hs.555902 NM_003887 HPRD:04820 ASAP2 AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 protein-coding 13-PTNLD9-TUMOR_peak_5684 chr1 228080454 228080635 + 5.67946 NA Intergenic Intergenic 48840 NR_049806 100847072 NR_049806 MIR5008 - microRNA 5008 ncRNA 13-PTNLD9-TUMOR_peak_17863 chr15 84962875 84963061 + 5.67853 NA Intergenic Intergenic -14249 NR_120379 103171574 Hs.694638 NR_120379 LOC103171574 - uncharacterized LOC103171574 ncRNA 13-PTNLD9-TUMOR_peak_42647 chr5 150022261 150022373 + 5.67853 NA intron (NM_007286, intron 1 of 2) intron (NM_007286, intron 1 of 2) 2110 NM_001109974 11346 Hs.435228 NM_007286 HPRD:12179 SYNPO - synaptopodin protein-coding 13-PTNLD9-TUMOR_peak_34659 chr3 52444586 52444863 + 5.67234 NA promoter-TSS (NM_004656) promoter-TSS (NM_004656) 147 NM_016483 51533 Hs.372719 NM_016483 HPRD:15127 PHF7 HSPC045|HSPC226|NYD-SP6 PHD finger protein 7 protein-coding 13-PTNLD9-TUMOR_peak_21550 chr17 54369481 54369626 + 5.67234 NA intron (NM_153228, intron 2 of 16) intron (NM_153228, intron 2 of 16) 138717 NM_153228 162282 Hs.673040 NM_153228 HPRD:08238 ANKFN1 - ankyrin-repeat and fibronectin type III domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_2540 chr1 94583664 94583809 + 5.67234 NA intron (NM_000350, intron 1 of 49) MIRb|SINE|MIR 2969 NM_000350 24 Hs.416707 NM_000350 HPRD:03408 ABCA4 ABC10|ABCR|ARMD2|CORD3|FFM|RMP|RP19|STGD|STGD1 ATP-binding cassette, sub-family A (ABC1), member 4 protein-coding 13-PTNLD9-TUMOR_peak_19441 chr16 57520318 57520445 + 5.67234 NA promoter-TSS (NM_018110) promoter-TSS (NM_018110) 4 NM_018110 55715 Hs.279832 NM_018110 HPRD:16316 DOK4 - docking protein 4 protein-coding 13-PTNLD9-TUMOR_peak_48614 chr7 101652291 101652514 + 5.67234 NA intron (NM_001202544, intron 2 of 21) MIRb|SINE|MIR 191520 NM_181552 1523 Hs.191482 NM_001913 HPRD:00295 CUX1 CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GOLIM6|Nbla10317|p100|p110|p200|p75 cut-like homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_18111 chr15 101834993 101835105 + 5.67234 NA intron (NM_003090, intron 1 of 8) CpG 411 NM_003090 6627 Hs.528763 NM_003090 HPRD:04629 SNRPA1 Lea1 small nuclear ribonucleoprotein polypeptide A' protein-coding 13-PTNLD9-TUMOR_peak_28527 chr2 134336976 134337118 + 5.67234 NA Intergenic Intergenic -11016 NM_207363 344148 Hs.537329 NM_207363 HPRD:16936 NCKAP5 ERIH1|ERIH2|NAP5 NCK-associated protein 5 protein-coding 13-PTNLD9-TUMOR_peak_54120 chr9 99365303 99365413 + 5.67234 NA intron (NM_003671, intron 1 of 12) intron (NM_003671, intron 1 of 12) 16754 NM_003671 8555 Hs.40582 NM_003671 HPRD:04615 CDC14B CDC14B3|Cdc14B1|Cdc14B2|hCDC14B cell division cycle 14B protein-coding 13-PTNLD9-TUMOR_peak_30178 chr2 241190603 241190729 + 5.67234 NA Intergenic Intergenic -110593 NM_148961 150677 Hs.148586 NM_148961 HPRD:09714 OTOS OTOSP otospiralin protein-coding 13-PTNLD9-TUMOR_peak_27753 chr2 97550215 97550314 + 5.67234 NA intron (NM_001172667, intron 2 of 4) intron (NM_001172667, intron 2 of 4) 10635 NM_001172667 51252 Hs.107922 NM_016490 HPRD:14235 FAM178B - family with sequence similarity 178, member B protein-coding 13-PTNLD9-TUMOR_peak_9693 chr11 46360352 46360446 + 5.67234 NA intron (NM_201532, intron 1 of 30) MIRb|SINE|MIR 5944 NM_201532 8525 Hs.502461 NM_003646 HPRD:03260 DGKZ DAGK5|DAGK6|DGK-ZETA|hDGKzeta diacylglycerol kinase, zeta protein-coding 13-PTNLD9-TUMOR_peak_7644 chr10 72318950 72319054 + 5.67234 NA intron (NM_014431, intron 18 of 19) L2a|LINE|L2 43529 NM_001083116 5551 Hs.2200 NM_005041 HPRD:01362 PRF1 FLH2|HPLH2|P1|PFN1|PFP perforin 1 (pore forming protein) protein-coding 13-PTNLD9-TUMOR_peak_37713 chr4 4357175 4357269 + 5.67234 NA Intergenic LTR24|LTR|ERV1 -30761 NM_001040101 27065 Hs.518595 NM_014392 HPRD:09624 NSG1 D4S234|D4S234E|NEEP21|P21 neuron specific gene family member 1 protein-coding 13-PTNLD9-TUMOR_peak_28098 chr2 113305071 113305210 + 5.67234 NA exon (NM_001282774, exon 3 of 13) exon (NM_001282774, exon 3 of 13) 5527 NM_001282772 84172 Hs.745127 NM_019014 HPRD:06852 POLR1B RPA135|RPA2|Rpo1-2 polymerase (RNA) I polypeptide B, 128kDa protein-coding 13-PTNLD9-TUMOR_peak_15469 chr14 32419013 32419159 + 5.67234 NA Intergenic Intergenic 126819 NR_027263 84837 Hs.496755 NM_032751 ENSG00000258655 ARHGAP5-AS1 C14orf128 ARHGAP5 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_6389 chr10 6162111 6162299 + 5.67026 NA Intergenic Intergenic -24638 NM_001145443 5209 Hs.195471 NM_004566 HPRD:05612 PFKFB3 IPFK2|PFK2 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 protein-coding 13-PTNLD9-TUMOR_peak_21462 chr17 48501334 48501470 + 5.67026 NA Intergenic Intergenic -2117 NM_001288968 80221 Hs.288959 NM_025149 HPRD:13380 ACSF2 ACSMW|AVYV493 acyl-CoA synthetase family member 2 protein-coding 13-PTNLD9-TUMOR_peak_24098 chr19 13063729 13063844 + 5.67026 NA exon (NM_001270363, exon 8 of 8) exon (NM_001270363, exon 8 of 8) 4282 NM_052850 90480 Hs.515164 NM_052850 HPRD:05519 GADD45GIP1 CKBBP2|CKbetaBP2|CRIF1|MRP-L59|PLINP|PLINP-1|PRG6|Plinp1 growth arrest and DNA-damage-inducible, gamma interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_7848 chr10 80831034 80831183 + 5.67026 NA intron (NM_020338, intron 1 of 24) intron (NM_020338, intron 1 of 24) 2316 NM_020338 57178 Hs.193118 NM_020338 HPRD:12115 ZMIZ1 MIZ|RAI17|TRAFIP10|ZIMP10|hZIMP10 zinc finger, MIZ-type containing 1 protein-coding 13-PTNLD9-TUMOR_peak_14133 chr12 122687960 122688173 + 5.67026 NA promoter-TSS (NM_030765) promoter-TSS (NM_030765) -162 NM_030765 79369 Hs.363315 NM_030765 HPRD:12058 B3GNT4 B3GN-T4|beta3Gn-T4 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4 protein-coding 13-PTNLD9-TUMOR_peak_32983 chr22 25387963 25388108 + 5.67026 NA Intergenic Intergenic -35906 NM_001145206 85379 Hs.419171 NM_001145206 ENSG00000197077 KIAA1671 - KIAA1671 protein-coding 13-PTNLD9-TUMOR_peak_43019 chr5 171879963 171880058 + 5.67026 NA intron (NM_001017995, intron 1 of 12) intron (NM_001017995, intron 1 of 12) 1517 NM_001017995 285590 Hs.285666 NM_001017995 HPRD:18591 SH3PXD2B FAD49|FTHS|HOFI|KIAA1295|TKS4|TSK4 SH3 and PX domains 2B protein-coding 13-PTNLD9-TUMOR_peak_41451 chr5 82769429 82769529 + 5.67026 NA intron (NM_001126336, intron 1 of 12) intron (NM_001126336, intron 1 of 12) 1986 NM_001164097 1462 Hs.643801 NM_004385 HPRD:00340 VCAN CSPG2|ERVR|GHAP|PG-M|WGN|WGN1 versican protein-coding 13-PTNLD9-TUMOR_peak_25452 chr19 50888690 50888895 + 5.66696 NA intron (NM_002691, intron 1 of 26) AluSx1|SINE|Alu 1212 NM_001256849 5424 Hs.279413 NM_002691 HPRD:08882 POLD1 CDC2|CRCS10|MDPL|POLD polymerase (DNA directed), delta 1, catalytic subunit protein-coding 13-PTNLD9-TUMOR_peak_14063 chr12 121084872 121084967 + 5.66480 NA intron (NM_001033677, intron 1 of 5) intron (NM_001033677, intron 1 of 5) -3391 NM_004276 9478 Hs.458482 NM_004276 ENSG00000157782 CABP1 CALBRAIN|HCALB_BR calcium binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_5842 chr1 232687329 232687464 + 5.66480 NA Intergenic Intergenic -36153 NM_020808 57568 Hs.745009 NM_020808 HPRD:15346 SIPA1L2 SPAL2 signal-induced proliferation-associated 1 like 2 protein-coding 13-PTNLD9-TUMOR_peak_54589 chr9 119213030 119213440 + 5.66480 NA intron (NM_198187, intron 5 of 8) intron (NM_198187, intron 5 of 8) -50350 NR_103711 493913 Hs.728832 NR_103711 ENSG00000256040 PAPPA-AS1 DIPAS|NCRNA00156|PAPPA-AS|PAPPAAS|PAPPAS|TAF2C2|TAF4B|TAFII105 PAPPA antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_39528 chr4 145321205 145321354 + 5.66480 NA Intergenic MLT1H|LTR|ERVL-MaLR -245869 NM_022475 64399 Hs.507991 NM_022475 HHIP HIP hedgehog interacting protein protein-coding 13-PTNLD9-TUMOR_peak_9298 chr11 20147546 20147753 + 5.66480 NA Intergenic Intergenic 34221 NM_001029865 120237 Hs.558604 NM_001029865 HPRD:18721 DBX1 - developing brain homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_17633 chr15 74374904 74375040 + 5.66480 NA promoter-TSS (NM_001038640) promoter-TSS (NM_001038640) -81 NM_001038640 342096 Hs.546408 NM_001038640 ENSG00000159289 GOLGA6A GLP|GOLGA6 golgin A6 family, member A protein-coding 13-PTNLD9-TUMOR_peak_22278 chr17 79643027 79643158 + 5.66480 NA Intergenic LTR13|LTR|ERVK 7862 NM_001040025 339231 Hs.658789 NM_001040025 ENSG00000214087 ARL16 - ADP-ribosylation factor-like 16 protein-coding 13-PTNLD9-TUMOR_peak_16588 chr14 101012831 101012991 + 5.66480 NA exon (NM_020836, exon 3 of 7) exon (NM_020836, exon 3 of 7) 21496 NM_001159531 57596 Hs.211751 NM_020836 HPRD:06459 BEGAIN - brain-enriched guanylate kinase-associated protein-coding 13-PTNLD9-TUMOR_peak_37161 chr3 188719534 188719628 + 5.66480 NA Intergenic Intergenic -54153 NR_046873 100874043 Hs.616287 NR_046873 TPRG1-AS1 - TPRG1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_23459 chr18 72272141 72272255 + 5.66480 NA Intergenic LTR87|LTR|ERVL? -7127 NR_024484 400657 Hs.61508 NM_001008234 HPRD:17385 LINC00909 - long intergenic non-protein coding RNA 909 ncRNA 13-PTNLD9-TUMOR_peak_25282 chr19 48775076 48775205 + 5.66480 NA intron (NM_153608, intron 3 of 5) CpG 1784 NM_153608 163071 Hs.511883 NM_153608 HPRD:14463 ZNF114 - zinc finger protein 114 protein-coding 13-PTNLD9-TUMOR_peak_6454 chr10 10873186 10873314 + 5.66480 NA Intergenic Intergenic -36373 NR_027082 207107 Hs.31562 NR_027082 ENSG00000225383 SFTA1P SFTPF surfactant associated 1, pseudogene pseudo 13-PTNLD9-TUMOR_peak_25048 chr19 42210918 42211012 + 5.66480 NA Intergenic L2a|LINE|L2 -1565 NM_004363 1048 Hs.709196 NM_004363 HPRD:00274 CEACAM5 CD66e|CEA carcinoembryonic antigen-related cell adhesion molecule 5 protein-coding 13-PTNLD9-TUMOR_peak_52958 chr9 27421756 27421868 + 5.66480 NA intron (NM_024761, intron 2 of 3) L2a|LINE|L2 -102500 NM_020124 56832 Hs.591083 NM_020124 HPRD:17133 IFNK IFNT1|INFE1 interferon, kappa protein-coding 13-PTNLD9-TUMOR_peak_34859 chr3 65875129 65875260 + 5.66480 NA intron (NM_001033057, intron 1 of 22) intron (NM_001033057, intron 1 of 22) -4297 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_17023 chr15 35292767 35292941 + 5.66480 NA Intergenic MLT2F|LTR|ERVL -12357 NM_014106 54989 Hs.744990 NM_014106 HPRD:16918 ZNF770 PRO1914 zinc finger protein 770 protein-coding 13-PTNLD9-TUMOR_peak_40494 chr5 24789005 24789184 + 5.66480 NA Intergenic Intergenic 51598 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LOC340107 - uncharacterized LOC340107 ncRNA 13-PTNLD9-TUMOR_peak_28019 chr2 111073819 111073992 + 5.66159 NA Intergenic LTR10D|LTR|ERV1 31475 NR_039941 100616123 NR_039941 MIR4436B1 MIR4436B|hsa-mir-4436b-1 microRNA 4436b-1 ncRNA 13-PTNLD9-TUMOR_peak_27310 chr2 74668990 74669225 + 5.66159 NA promoter-TSS (NM_001015055) promoter-TSS (NM_001015055) -47 NM_001015055 6242 Hs.192854 NM_033046 HPRD:03795 RTKN - rhotekin protein-coding 13-PTNLD9-TUMOR_peak_22476 chr18 3595539 3595746 + 5.66159 NA intron (NR_024101, intron 2 of 2) intron (NR_024101, intron 2 of 2) 1530 NR_024101 649446 Hs.19872 NM_001039796 DLGAP1-AS1 HsT914 DLGAP1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_28399 chr2 129076428 129076559 + 5.66159 NA promoter-TSS (NM_004807) promoter-TSS (NM_004807) -322 NM_004807 9394 Hs.512841 NM_004807 HPRD:07274 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_8038 chr10 95225615 95225830 + 5.65645 NA intron (NM_133337, intron 1 of 52) intron (NM_133337, intron 1 of 52) 16352 NM_133337 26509 Hs.602086 NM_013451 HPRD:06857 MYOF FER1L3 myoferlin protein-coding 13-PTNLD9-TUMOR_peak_5021 chr1 202169560 202169654 + 5.65645 NA intron (NM_001017403, intron 1 of 17) intron (NM_001017403, intron 1 of 17) -3298 NM_021636 59352 Hs.497402 NM_021636 HPRD:05974 LGR6 GPCR|VTS20631 leucine-rich repeat containing G protein-coupled receptor 6 protein-coding 13-PTNLD9-TUMOR_peak_9577 chr11 37526594 37526826 + 5.65645 NA Intergenic Intergenic -906881 NM_001243786 5897 Hs.714519 NM_000536 HPRD:08913 RAG2 RAG-2 recombination activating gene 2 protein-coding 13-PTNLD9-TUMOR_peak_49662 chr7 151065328 151065510 + 5.65645 NA intron (NM_016118, intron 10 of 14) MLT1J1|LTR|ERVL-MaLR 26572 NM_001243351 51667 Hs.647082 NM_016118 HPRD:07450 NUB1 BS4|NUB1L|NYREN18 negative regulator of ubiquitin-like proteins 1 protein-coding 13-PTNLD9-TUMOR_peak_36112 chr3 138642413 138642507 + 5.65645 NA Intergenic LTR88a|LTR|Gypsy? 20402 NR_121649 103344930 Hs.195033 NR_121649 LINC01391 - long intergenic non-protein coding RNA 1391 ncRNA 13-PTNLD9-TUMOR_peak_39153 chr4 119186636 119186905 + 5.65645 NA Intergenic LTR12C|LTR|ERV1 -13147 NR_034010 100093630 Hs.535762 NR_003584 ENSG00000269893 SNHG8 LINC00060|NCRNA00060 small nucleolar RNA host gene 8 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_27680 chr2 95688180 95688281 + 5.65645 NA Intergenic Intergenic -3170 NM_022439 4118 Hs.80395 NM_002371 HPRD:01789 MAL - mal, T-cell differentiation protein protein-coding 13-PTNLD9-TUMOR_peak_27689 chr2 95981810 95981991 + 5.65645 NA intron (NM_013434, intron 2 of 8) ERVL-E-int|LTR|ERVL 18828 NM_013434 30818 Hs.437376 NM_013434 HPRD:05232 KCNIP3 CSEN|DREAM|KCHIP3 Kv channel interacting protein 3, calsenilin protein-coding 13-PTNLD9-TUMOR_peak_2272 chr1 82145813 82145907 + 5.65645 NA Intergenic Intergenic -19595 NM_001297704 23266 Hs.24212 NM_012302 HPRD:06116 LPHN2 CIRL2|CL2|LEC1|LPHH1 latrophilin 2 protein-coding 13-PTNLD9-TUMOR_peak_46634 chr7 556734 556923 + 5.65645 NA intron (NM_033023, intron 2 of 5) CpG 2653 NM_002607 5154 Hs.535898 NM_002607 HPRD:01424 PDGFA PDGF-A|PDGF1 platelet-derived growth factor alpha polypeptide protein-coding 13-PTNLD9-TUMOR_peak_8216 chr10 104182534 104182668 + 5.65645 NA TTS (NM_024040) TTS (NM_024040) -2910 NM_001270965 5662 Hs.154658 NM_002779 HPRD:09085 PSD EFA6|EFA6A|PSD1|TYL pleckstrin and Sec7 domain containing protein-coding 13-PTNLD9-TUMOR_peak_34515 chr3 48752751 48752925 + 5.65645 NA exon (NM_001190317, exon 2 of 3) exon (NM_001190317, exon 2 of 3) 1873 NM_001146179 51447 Hs.595983 NM_016291 HPRD:07380 IP6K2 IHPK2|PIUS inositol hexakisphosphate kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_49407 chr7 141349742 141349922 + 5.65645 NA intron (NM_018238, intron 14 of 15) intron (NM_018238, intron 14 of 15) 52121 NM_001080392 57189 Hs.521240 NM_001080392 ENSG00000257093 KIAA1147 LCHN|PRO2561 KIAA1147 protein-coding 13-PTNLD9-TUMOR_peak_41984 chr5 129624911 129625122 + 5.65645 NA Intergenic Intergenic 384493 NM_175856 337876 Hs.213137 NM_175856 HPRD:16766 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 13-PTNLD9-TUMOR_peak_6248 chr10 821546 821640 + 5.65645 NA Intergenic Intergenic -85985 NM_014974 22982 Hs.432397 NM_014974 HPRD:17200 DIP2C KIAA0934 DIP2 disco-interacting protein 2 homolog C (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_5244 chr1 206165366 206165540 + 5.64770 NA Intergenic MIR3|SINE|MIR 26542 NM_001123168 729533 Hs.661924 NM_001123168 FAM72A LMPIP family with sequence similarity 72, member A protein-coding 13-PTNLD9-TUMOR_peak_42283 chr5 139076320 139076593 + 5.64459 NA Intergenic Intergenic 48155 NM_016463 51523 Hs.744933 NM_016463 HPRD:13105 CXXC5 CF5|RINF|WID CXXC finger protein 5 protein-coding 13-PTNLD9-TUMOR_peak_20996 chr17 38186507 38186709 + 5.64459 NA intron (NR_052017, intron 11 of 24) AluSg|SINE|Alu -2710 NR_102369 101340251 NR_102369 SNORD124 - small nucleolar RNA, C/D box 124 snoRNA 13-PTNLD9-TUMOR_peak_37419 chr3 195923610 195923704 + 5.64459 NA TTS (NM_001039617) TTS (NM_001039617) 14643 NM_001039617 131540 Hs.111591 NM_144637 HPRD:15714 ZDHHC19 DHHC19 zinc finger, DHHC-type containing 19 protein-coding 13-PTNLD9-TUMOR_peak_3228 chr1 144280868 144281062 + 5.64032 NA intron (NM_001278267, intron 52 of 130) intron (NM_001278267, intron 52 of 130) 59794 NR_109754 728855 Hs.456578 NR_024510 ENSG00000235398 LINC00623 CH17-118O6.2 long intergenic non-protein coding RNA 623 ncRNA 13-PTNLD9-TUMOR_peak_50150 chr8 16885175 16885297 + 5.64032 NA intron (NM_181723, intron 1 of 14) CpG 489 NM_181723 286097 Hs.403594 NM_181723 HPRD:13264 MICU3 EFHA2 mitochondrial calcium uptake family, member 3 protein-coding 13-PTNLD9-TUMOR_peak_18077 chr15 100105513 100105869 + 5.64032 NA promoter-TSS (NM_001130927) promoter-TSS (NM_001130927) -442 NM_005587 4205 Hs.268675 NM_005587 HPRD:02807 MEF2A ADCAD1|RSRFC4|RSRFC9|mef2 myocyte enhancer factor 2A protein-coding 13-PTNLD9-TUMOR_peak_11800 chr12 1692763 1692857 + 5.64032 NA intron (NM_152441, intron 1 of 1) intron (NM_152441, intron 1 of 1) 10521 NM_152441 144699 Hs.367956 NM_152441 HPRD:10949 FBXL14 Fbl14 F-box and leucine-rich repeat protein 14 protein-coding 13-PTNLD9-TUMOR_peak_4004 chr1 157978455 157978549 + 5.64032 NA intron (NM_001286349, intron 1 of 12) intron (NM_001286349, intron 1 of 12) 15439 NM_018240 55243 Hs.272234 NM_018240 HPRD:06306 KIRREL NEPH1 kin of IRRE like (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_18294 chr16 3042778 3042953 + 5.64032 NA non-coding (NR_033861, exon 5 of 5) non-coding (NR_033861, exon 5 of 5) 3810 NR_033861 283875 Hs.620489 NR_033861 ENSG00000262152 LINC00514 LA16c-380H5.1 long intergenic non-protein coding RNA 514 ncRNA 13-PTNLD9-TUMOR_peak_1332 chr1 41346902 41347000 + 5.64032 NA Intergenic MIR3|SINE|MIR -18933 NM_133467 163732 Hs.355820 NM_133467 HPRD:06011 CITED4 - Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4 protein-coding 13-PTNLD9-TUMOR_peak_28268 chr2 121194945 121195060 + 5.64032 NA Intergenic Intergenic 28923 NR_027181 84931 Hs.334519 NM_032845 HPRD:08604 LINC01101 - long intergenic non-protein coding RNA 1101 ncRNA 13-PTNLD9-TUMOR_peak_50099 chr8 12081502 12081727 + 5.64032 NA Intergenic HERVK-int|LTR|ERVK -29990 NM_001083537 85002 Hs.675799 NM_001083537 HPRD:17515 FAM86B1 - family with sequence similarity 86, member B1 protein-coding 13-PTNLD9-TUMOR_peak_24969 chr19 40349324 40349418 + 5.64032 NA Intergenic MER51A|LTR|ERV1 -12317 NM_001436 2091 Hs.299002 NM_001436 HPRD:00617 FBL FIB|FLRN|RNU3IP1 fibrillarin protein-coding 13-PTNLD9-TUMOR_peak_12499 chr12 34371503 34371677 + 5.64032 NA Intergenic Intergenic 196374 NM_032834 84920 Hs.102971 NM_032834 ALG10 ALG10A|DIE2|KCR1 ALG10, alpha-1,2-glucosyltransferase protein-coding 13-PTNLD9-TUMOR_peak_10323 chr11 66749643 66749773 + 5.64032 NA Intergenic Intergenic 6954 NM_001136485 254439 Hs.232604 NM_001136485 ENSG00000173237 C11orf86 - chromosome 11 open reading frame 86 protein-coding 13-PTNLD9-TUMOR_peak_35463 chr3 116971215 116971327 + 5.64032 NA Intergenic Intergenic 330993 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 13-PTNLD9-TUMOR_peak_44370 chr6 28574684 28574779 + 5.64032 NA Intergenic Intergenic -19619 NM_052923 114821 Hs.176980 NM_052923 HPRD:11720 ZBED9 Buster4|SCAND3|ZFP38-L|ZNF305P2|ZNF452|dJ1186N24.3 zinc finger, BED-type containing 9 protein-coding 13-PTNLD9-TUMOR_peak_25506 chr19 51842152 51842462 + 5.64032 NA exon (NM_001163922, exon 5 of 10) exon (NM_001163922, exon 5 of 10) 3071 NM_001163922 147645 Hs.293236 NM_001163922 ENSG00000186806 VSIG10L - V-set and immunoglobulin domain containing 10 like protein-coding 13-PTNLD9-TUMOR_peak_17450 chr15 65230441 65230541 + 5.64032 NA intron (NM_182703, intron 9 of 14) L1MC3|LINE|L1 26390 NM_182703 348094 Hs.207157 NM_182703 HPRD:14178 ANKDD1A - ankyrin repeat and death domain containing 1A protein-coding 13-PTNLD9-TUMOR_peak_32365 chr21 41246762 41246932 + 5.64032 NA intron (NM_006198, intron 1 of 2) MER44B|DNA|TcMar-Tigger 7500 NM_006198 5121 Hs.80296 NM_006198 HPRD:03378 PCP4 PEP-19 Purkinje cell protein 4 protein-coding 13-PTNLD9-TUMOR_peak_5571 chr1 224389157 224389375 + 5.64032 NA Intergenic Intergenic 11715 NR_110669 101927143 Hs.638720 NR_110669 ENSG00000232628 LOC101927143 - uncharacterized LOC101927143 ncRNA 13-PTNLD9-TUMOR_peak_48282 chr7 91073893 91074089 + 5.64032 NA Intergenic Intergenic 180208 NM_003505 8321 Hs.94234 NM_003505 HPRD:04558 FZD1 - frizzled class receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_35638 chr3 124319043 124319174 + 5.64032 NA intron (NM_007064, intron 1 of 26) intron (NM_007064, intron 1 of 26) 15602 NM_007064 8997 Hs.8004 NM_003947 HPRD:06859 KALRN ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD kalirin, RhoGEF kinase protein-coding 13-PTNLD9-TUMOR_peak_3898 chr1 155953435 155953574 + 5.63977 NA Intergenic Intergenic -5168 NM_001162384 9181 Hs.743352 NM_004723 HPRD:10458 ARHGEF2 GEF|GEF-H1|GEFH1|LFP40|P40 Rho/Rac guanine nucleotide exchange factor (GEF) 2 protein-coding 13-PTNLD9-TUMOR_peak_33870 chr3 14163442 14163569 + 5.63689 NA 5' UTR (NM_144636, exon 2 of 4) 5' UTR (NM_144636, exon 2 of 4) 2866 NM_001098502 131474 Hs.517815 NM_144636 HPRD:13045 CHCHD4 MIA40|TIMM40 coiled-coil-helix-coiled-coil-helix domain containing 4 protein-coding 13-PTNLD9-TUMOR_peak_36060 chr3 136538317 136538542 + 5.63326 NA 5' UTR (NM_025246, exon 1 of 2) 5' UTR (NM_025246, exon 1 of 2) 568 NM_025246 80723 Hs.477692 NM_025246 HPRD:15532 SLC35G2 TMEM22 solute carrier family 35, member G2 protein-coding 13-PTNLD9-TUMOR_peak_31707 chr20 57220694 57221036 + 5.63326 NA Intergenic Intergenic -5444 NR_037943 8675 Hs.307913 NM_003763 HPRD:04718 STX16 SYN16 syntaxin 16 protein-coding 13-PTNLD9-TUMOR_peak_27851 chr2 101869672 101869892 + 5.63326 NA exon (NM_017546, exon 1 of 7) exon (NM_017546, exon 1 of 7) 437 NM_017546 55571 Hs.744080 NM_017546 HPRD:12812 CNOT11 C2orf29 CCR4-NOT transcription complex, subunit 11 protein-coding 13-PTNLD9-TUMOR_peak_14506 chr13 30168493 30168595 + 5.63326 NA intron (NM_003045, intron 1 of 12) intron (NM_003045, intron 1 of 12) 1281 NM_003045 6541 Hs.14846 NM_003045 HPRD:00091 SLC7A1 ATRC1|CAT-1|ERR|HCAT1|REC1L solute carrier family 7 (cationic amino acid transporter, y+ system), member 1 protein-coding 13-PTNLD9-TUMOR_peak_50115 chr8 12522818 12523023 + 5.63326 NA non-coding (NR_047662, exon 1 of 9) non-coding (NR_047662, exon 1 of 9) 200 NR_047662 729732 Hs.322761 NR_047662 LOC729732 - uncharacterized LOC729732 ncRNA 13-PTNLD9-TUMOR_peak_33825 chr3 13060869 13061017 + 5.63326 NA intron (NM_001134382, intron 1 of 14) intron (NM_001134382, intron 1 of 14) -51745 NM_014869 9922 Hs.475506 NM_014869 HPRD:11052 IQSEC1 ARF-GEP100|ARFGEP100|BRAG2|GEP100 IQ motif and Sec7 domain 1 protein-coding 13-PTNLD9-TUMOR_peak_12746 chr12 50504562 50504785 + 5.63073 NA 3' UTR (NM_005276, exon 8 of 8) 3' UTR (NM_005276, exon 8 of 8) -1091 NM_001257134 84987 Hs.388645 NM_032901 HPRD:17495 COX14 C12orf62 cytochrome c oxidase assembly homolog 14 (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_1648 chr1 47222500 47222663 + 5.63066 NA Intergenic MER11D|LTR|ERVK -37845 NM_014774 9813 Hs.707688 NM_014774 HPRD:17191 EFCAB14 KIAA0494 EF-hand calcium binding domain 14 protein-coding 13-PTNLD9-TUMOR_peak_52446 chr8 144660837 144660933 + 5.62939 NA promoter-TSS (NM_001286829) promoter-TSS (NM_001286829) -364 NM_145201 93100 Hs.493164 NM_145201 HPRD:15161 NAPRT NAPRT1|PP3856 nicotinate phosphoribosyltransferase protein-coding 13-PTNLD9-TUMOR_peak_8521 chr10 124639383 124639506 + 5.62779 NA promoter-TSS (NR_037915) promoter-TSS (NR_037915) -287 NR_037915 100533195 Hs.647182 NR_037915 FAM24B-CUZD1 - FAM24B-CUZD1 readthrough ncRNA 13-PTNLD9-TUMOR_peak_14289 chr12 128294663 128294856 + 5.62779 NA Intergenic Intergenic -71403 NR_033987 400087 Hs.524846 NR_033987 FLJ37505 - uncharacterized LOC400087 ncRNA 13-PTNLD9-TUMOR_peak_6929 chr10 35102896 35102998 + 5.62779 NA intron (NM_001184791, intron 1 of 20) intron (NM_001184791, intron 1 of 20) 1306 NM_001184791 56288 Hs.131489 NM_019619 HPRD:05994 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 13-PTNLD9-TUMOR_peak_10026 chr11 61655575 61655681 + 5.62779 NA intron (NM_021727, intron 1 of 11) intron (NM_021727, intron 1 of 11) 3389 NM_021727 3995 Hs.21765 NM_021727 HPRD:07547 FADS3 CYB5RP|LLCDL3 fatty acid desaturase 3 protein-coding 13-PTNLD9-TUMOR_peak_3132 chr1 121279504 121279599 + 5.62779 NA intron (NR_003955, intron 1 of 7) L1HS|LINE|L1 18641 NR_003955 647121 Hs.697682 NR_003955 EMBP1 - embigin pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_53994 chr9 94659178 94659276 + 5.62779 NA intron (NM_004560, intron 1 of 8) intron (NM_004560, intron 1 of 8) 53217 NM_004560 4920 Hs.98255 NM_004560 HPRD:03822 ROR2 BDB|BDB1|NTRKR2 receptor tyrosine kinase-like orphan receptor 2 protein-coding 13-PTNLD9-TUMOR_peak_11967 chr12 6456748 6456842 + 5.62779 NA 3' UTR (NM_001159575, exon 13 of 13) 3' UTR (NM_001159575, exon 13 of 13) -5512 NM_001065 7132 Hs.279594 NM_001065 HPRD:01861 TNFRSF1A CD120a|FPF|MS5|TBP1|TNF-R|TNF-R-I|TNF-R55|TNFAR|TNFR1|TNFR1-d2|TNFR55|TNFR60|p55|p55-R|p60 tumor necrosis factor receptor superfamily, member 1A protein-coding 13-PTNLD9-TUMOR_peak_8081 chr10 97890276 97890370 + 5.62779 NA intron (NM_001278525, intron 1 of 5) CpG 510 NM_001278525 9849 Hs.600823 NM_014803 ZNF518A ZNF518 zinc finger protein 518A protein-coding 13-PTNLD9-TUMOR_peak_40523 chr5 31809323 31809417 + 5.62779 NA intron (NM_178140, intron 1 of 23) intron (NM_178140, intron 1 of 23) 10339 NM_178140 23037 Hs.481819 NM_015022 HPRD:10142 PDZD2 AIPC|PAPIN|PDZK3|PIN1 PDZ domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_28261 chr2 121078036 121078228 + 5.62779 NA Intergenic Intergenic -25587 NM_002193 3625 Hs.1735 NM_002193 HPRD:00934 INHBB - inhibin, beta B protein-coding 13-PTNLD9-TUMOR_peak_8547 chr10 126425104 126425441 + 5.62779 NA intron (NM_014661, intron 1 of 4) intron (NM_014661, intron 1 of 4) 7658 NM_014661 9679 Hs.129195 NM_014661 HPRD:13314 FAM53B KIAA0140|bA12J10.2 family with sequence similarity 53, member B protein-coding 13-PTNLD9-TUMOR_peak_8421 chr10 119202520 119202742 + 5.62779 NA Intergenic Intergenic -67694 NM_173791 118987 Hs.501149 NM_173791 PDZD8 PDZK8|bA129M16.2 PDZ domain containing 8 protein-coding 13-PTNLD9-TUMOR_peak_4581 chr1 179514486 179514642 + 5.62779 NA intron (NR_073544, intron 25 of 25) intron (NR_073544, intron 25 of 25) 30523 NM_014625 7827 Hs.412710 NM_014625 HPRD:05303 NPHS2 PDCN|SRN1 nephrosis 2, idiopathic, steroid-resistant (podocin) protein-coding 13-PTNLD9-TUMOR_peak_56459 chrX 126496329 126496485 + 5.62779 NA Intergenic L1HS|LINE|L1 542660 NM_001122716 100130613 Hs.130370 NM_001122716 ENSG00000183631 PRR32 CXorf64 proline rich 32 protein-coding 13-PTNLD9-TUMOR_peak_38133 chr4 26085641 26085869 + 5.62779 NA Intergenic Intergenic 169941 NM_001145432 389203 Hs.479386 NM_001145432 ENSG00000250317 SMIM20 C4orf52 small integral membrane protein 20 protein-coding 13-PTNLD9-TUMOR_peak_50065 chr8 10548967 10549090 + 5.62779 NA intron (NM_001040032, intron 2 of 3) intron (NM_001040032, intron 2 of 3) 18881 NM_001040032 203076 Hs.371776 NM_001040032 ENSG00000171060 C8orf74 - chromosome 8 open reading frame 74 protein-coding 13-PTNLD9-TUMOR_peak_2662 chr1 101616372 101616492 + 5.62779 NA Intergenic Intergenic 85652 NR_104626 101928370 Hs.534209 NR_104626 LOC101928370 - uncharacterized LOC101928370 ncRNA 13-PTNLD9-TUMOR_peak_42895 chr5 167157313 167157409 + 5.62779 NA intron (NM_001122679, intron 2 of 28) intron (NM_001122679, intron 2 of 28) 445518 NM_001122679 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2 teneurin transmembrane protein 2 protein-coding 13-PTNLD9-TUMOR_peak_6241 chr10 659256 659558 + 5.62779 NA intron (NM_014974, intron 1 of 36) intron (NM_014974, intron 1 of 36) 28311 NR_049884 100847086 NR_049884 MIR5699 - microRNA 5699 ncRNA 13-PTNLD9-TUMOR_peak_49283 chr7 137567033 137567193 + 5.62779 NA intron (NM_194071, intron 11 of 11) intron (NM_194071, intron 11 of 11) -35504 NM_004717 9162 Hs.242947 NM_004717 HPRD:07238 DGKI DGK-IOTA diacylglycerol kinase, iota protein-coding 13-PTNLD9-TUMOR_peak_30608 chr20 23181724 23181823 + 5.62779 NA Intergenic Intergenic -68500 NR_034149 200261 Hs.352228 NM_182535 HPRD:14124 LINC00656 - long intergenic non-protein coding RNA 656 ncRNA 13-PTNLD9-TUMOR_peak_10431 chr11 69017300 69017424 + 5.62779 NA Intergenic Intergenic -44243 NM_001300923 26579 Hs.523848 NM_138768 HPRD:16130 MYEOV OCIM myeloma overexpressed protein-coding 13-PTNLD9-TUMOR_peak_55588 chrX 17050587 17050701 + 5.62779 NA intron (NM_004726, intron 5 of 17) intron (NM_004726, intron 5 of 17) 85830 NM_001080975 9185 Hs.186810 NM_004726 HPRD:02262 REPS2 POB1 RALBP1 associated Eps domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_25660 chr19 55539592 55539703 + 5.62779 NA intron (NM_001083899, intron 3 of 7) intron (NM_001083899, intron 3 of 7) 9985 NM_016363 51206 Hs.661752 NM_016363 HPRD:10406 GP6 BDPLT11|GPIV|GPVI glycoprotein VI (platelet) protein-coding 13-PTNLD9-TUMOR_peak_41349 chr5 76373133 76373241 + 5.62779 NA exon (NM_032367, exon 3 of 3) exon (NM_032367, exon 3 of 3) 3209 NR_003014 677828 Hs.693249 NR_003014 ENSG00000238961 SNORA47 HBI-115 small nucleolar RNA, H/ACA box 47 snoRNA 13-PTNLD9-TUMOR_peak_2963 chr1 115873193 115873486 + 5.62779 NA intron (NM_002506, intron 1 of 2) intron (NM_002506, intron 1 of 2) 7518 NM_002506 4803 Hs.2561 NM_002506 HPRD:08874 NGF Beta-NGF|HSAN5|NGFB nerve growth factor (beta polypeptide) protein-coding 13-PTNLD9-TUMOR_peak_9064 chr11 11576921 11577033 + 5.62779 NA intron (NM_198516, intron 1 of 10) intron (NM_198516, intron 1 of 10) 66584 NM_198516 374378 Hs.655152 NM_198516 HPRD:13564 GALNT18 GALNACT18|GALNT15|GALNTL4|GalNAc-T15|GalNAc-T18 polypeptide N-acetylgalactosaminyltransferase 18 protein-coding 13-PTNLD9-TUMOR_peak_35445 chr3 115060179 115060275 + 5.62779 NA Intergenic Intergenic -194100 NM_015642 26137 Hs.202577 NM_015642 HPRD:05822 ZBTB20 DPZF|HOF|ODA-8S|ZNF288 zinc finger and BTB domain containing 20 protein-coding 13-PTNLD9-TUMOR_peak_5009 chr1 202075601 202075743 + 5.62280 NA Intergenic Intergenic -16357 NM_004767 9283 Hs.132049 NM_004767 GPR37L1 ET(B)R-LP-2|ETBR-LP-2 G protein-coupled receptor 37 like 1 protein-coding 13-PTNLD9-TUMOR_peak_32630 chr22 16374640 16374868 + 5.62110 NA Intergenic CpG 75050 NM_001005239 81061 Hs.554706 NM_001005239 OR11H1 OR22-1 olfactory receptor, family 11, subfamily H, member 1 protein-coding 13-PTNLD9-TUMOR_peak_14766 chr13 50698370 50698600 + 5.62019 NA intron (NR_109974, intron 2 of 6) CpG 1192 NR_002612 8847 Hs.547964 NR_002612 DLEU2 1B4|BCMSUN|DLB2|LEU2|LINC00022|MIR15AHG|NCRNA00022|RFP2OS|TRIM13OS deleted in lymphocytic leukemia 2 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_3359 chr1 146696803 146697008 + 5.61955 NA 5' UTR (NM_001144829, exon 1 of 9) 5' UTR (NM_001144829, exon 1 of 9) 325 NM_001144829 2330 Hs.642706 NM_001461 HPRD:04904 FMO5 - flavin containing monooxygenase 5 protein-coding 13-PTNLD9-TUMOR_peak_46429 chr6 159125310 159125436 + 5.61955 NA intron (NM_001242395, intron 6 of 15) intron (NM_001242395, intron 6 of 15) 54327 NM_001242394 94120 Hs.436977 NM_001009991 HPRD:15462 SYTL3 SLP3 synaptotagmin-like 3 protein-coding 13-PTNLD9-TUMOR_peak_23103 chr18 45660182 45660310 + 5.61955 NA intron (NM_001039360, intron 1 of 2) intron (NM_001039360, intron 1 of 2) 3434 NM_001039360 201501 Hs.515388 NM_001039360 ENSG00000184828 ZBTB7C APM-1|APM1|ZBTB36|ZNF857C zinc finger and BTB domain containing 7C protein-coding 13-PTNLD9-TUMOR_peak_54900 chr9 132369852 132370229 + 5.61955 NA Intergenic Intergenic -1123 NM_001286796 28989 Hs.744027 NM_014064 HPRD:10628 NTMT1 AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NTM1A N-terminal Xaa-Pro-Lys N-methyltransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_37372 chr3 195338960 195339112 + 5.61955 NA Intergenic L2a|LINE|L2 -27960 NM_001647 347 Hs.522555 NM_001647 HPRD:00134 APOD - apolipoprotein D protein-coding 13-PTNLD9-TUMOR_peak_50760 chr8 42698144 42698297 + 5.61955 NA exon (NM_018105, exon 1 of 3) exon (NM_018105, exon 1 of 3) 254 NM_018105 55145 Hs.7432 NM_018105 HPRD:15496 THAP1 DYT6 THAP domain containing, apoptosis associated protein 1 protein-coding 13-PTNLD9-TUMOR_peak_28221 chr2 119731193 119731363 + 5.61955 NA intron (NM_006770, intron 4 of 16) intron (NM_006770, intron 4 of 16) 31533 NM_006770 8685 Hs.67726 NM_006770 HPRD:05337 MARCO SCARA2 macrophage receptor with collagenous structure protein-coding 13-PTNLD9-TUMOR_peak_29072 chr2 172380601 172380796 + 5.61955 NA intron (NM_001127383, intron 1 of 2) intron (NM_001127383, intron 1 of 2) 1832 NM_001127383 79901 Hs.221941 NM_024843 HPRD:05764 CYBRD1 CYB561A2|DCYTB|FRRS3 cytochrome b reductase 1 protein-coding 13-PTNLD9-TUMOR_peak_19897 chr16 81852065 81852200 + 5.61955 NA intron (NM_002661, intron 2 of 32) intron (NM_002661, intron 2 of 32) 39269 NM_002661 5336 Hs.372303 NM_002661 HPRD:02570 PLCG2 APLAID|FCAS3|PLC-IV|PLC-gamma-2 phospholipase C, gamma 2 (phosphatidylinositol-specific) protein-coding 13-PTNLD9-TUMOR_peak_48682 chr7 102985067 102985304 + 5.61955 NA 5' UTR (NM_014377, exon 1 of 17) 5' UTR (NM_014377, exon 1 of 17) 135 NM_014377 27000 Hs.558476 NM_014377 ENSG00000105821 DNAJC2 MPHOSPH11|MPP11|ZRF1|ZUO1 DnaJ (Hsp40) homolog, subfamily C, member 2 protein-coding 13-PTNLD9-TUMOR_peak_16686 chr14 105560214 105560344 + 5.61955 NA promoter-TSS (NR_110546) promoter-TSS (NR_110546) -205 NR_110546 102723354 Hs.569410 NR_110546 LOC102723354 - uncharacterized LOC102723354 ncRNA 13-PTNLD9-TUMOR_peak_40012 chr4 186064839 186064945 + 5.61955 NA intron (NM_001151, intron 1 of 3) intron (NM_001151, intron 1 of 3) 475 NM_001151 291 Hs.246506 NM_001151 HPRD:00058 SLC25A4 1|AAC1|ANT|ANT 1|ANT1|MTDPS12|PEO2|PEO3|T1 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4 protein-coding 13-PTNLD9-TUMOR_peak_44634 chr6 32811771 32811879 + 5.61955 NA promoter-TSS (NR_037173) promoter-TSS (NR_037173) -9 NM_148919 5696 Hs.180062 NM_004159 HPRD:01515 PSMB8 ALDD|D6S216|D6S216E|JMP|LMP7|NKJO|PSMB5i|RING10 proteasome (prosome, macropain) subunit, beta type, 8 protein-coding 13-PTNLD9-TUMOR_peak_18277 chr16 2908092 2908314 + 5.61955 NA promoter-TSS (NM_022119) promoter-TSS (NM_022119) -32 NM_022119 64063 Hs.459709 NM_022119 HPRD:08336 PRSS22 BSSP-4|hBSSP-4 protease, serine, 22 protein-coding 13-PTNLD9-TUMOR_peak_2682 chr1 104196869 104197062 + 5.61897 NA Intergenic HERVE_a-int|LTR|ERV1 -1176 NM_001008221 276 Hs.655232 NM_004038 HPRD:00096 AMY1A AMY1 amylase, alpha 1A (salivary) protein-coding 13-PTNLD9-TUMOR_peak_13914 chr12 113655317 113655420 + 5.61673 NA intron (NM_138451, intron 1 of 2) AluSz6|SINE|Alu 3531 NM_138451 115811 Hs.568276 NM_138451 HPRD:13744 IQCD 4933433C09Rik|CFAP84|DRC10 IQ motif containing D protein-coding 13-PTNLD9-TUMOR_peak_56946 chrY 13838832 13838988 + 5.61374 NA Intergenic (GAATG)n|Satellite|Satellite 694479 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_36529 chr3 157250368 157250620 + 5.61034 NA Intergenic Intergenic -10639 NM_001130001 152078 Hs.259046 NM_001099777 ENSG00000174899 C3orf55 - chromosome 3 open reading frame 55 protein-coding 13-PTNLD9-TUMOR_peak_3197 chr1 143661324 143661418 + 5.61034 NA Intergenic Intergenic -11550 NR_106967 102466225 NR_106967 MIR6077 MIR6077-1|MIR6077-2|hsa-mir-6077-1|hsa-mir-6077-2 microRNA 6077 ncRNA 13-PTNLD9-TUMOR_peak_12169 chr12 12849104 12849204 + 5.60858 NA promoter-TSS (NM_006143) promoter-TSS (NM_006143) -33 NM_006143 2842 Hs.657862 NM_006143 HPRD:04236 GPR19 - G protein-coupled receptor 19 protein-coding 13-PTNLD9-TUMOR_peak_45330 chr6 53329774 53329892 + 5.60858 NA Intergenic L2a|LINE|L2 80094 NM_001197115 2729 Hs.654465 NM_001498 HPRD:06032 GCLC GCL|GCS|GLCL|GLCLC glutamate-cysteine ligase, catalytic subunit protein-coding 13-PTNLD9-TUMOR_peak_9485 chr11 34055751 34055845 + 5.60858 NA Intergenic L2|LINE|L2 -17432 NM_005898 4076 Hs.471818 NM_005898 HPRD:03108 CAPRIN1 GPIAP1|GPIP137|GRIP137|M11S1|RNG105|p137GPI cell cycle associated protein 1 protein-coding 13-PTNLD9-TUMOR_peak_36916 chr3 182707462 182707612 + 5.60858 NA Intergenic Intergenic -9211 NM_020640 54165 Hs.744153 NM_020640 DCUN1D1 DCNL1|DCUN1L1|RP42|SCCRO|SCRO|Tes3 DCN1, defective in cullin neddylation 1, domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_56319 chrX 106917385 106917534 + 5.60858 NA Intergenic Intergenic 42252 NM_001015881 1831 Hs.522074 NM_004089 HPRD:04266 TSC22D3 DIP|DSIPI|GILZ|TSC-22R|hDIP TSC22 domain family, member 3 protein-coding 13-PTNLD9-TUMOR_peak_4617 chr1 180923362 180923567 + 5.60858 NA Intergenic CpG 41151 NM_020950 57710 Hs.734816 NM_020950 KIAA1614 - KIAA1614 protein-coding 13-PTNLD9-TUMOR_peak_42217 chr5 137304719 137304894 + 5.60858 NA intron (NM_001101801, intron 9 of 21) L1PA3|LINE|L1 63996 NM_016603 51306 Hs.567453 NM_016603 HPRD:06464 FAM13B ARHGAP49|C5orf5|FAM13B1|KHCHP|N61 family with sequence similarity 13, member B protein-coding 13-PTNLD9-TUMOR_peak_20077 chr16 88540414 88540508 + 5.60858 NA intron (NM_153813, intron 1 of 9) CpG 5135 NR_049821 100847057 NR_049821 MIR5189 - microRNA 5189 ncRNA 13-PTNLD9-TUMOR_peak_33509 chr22 50468822 50468924 + 5.60858 NA Intergenic CpG -17818 NM_001001694 400935 Hs.526712 NM_001001694 HPRD:13456 IL17REL - interleukin 17 receptor E-like protein-coding 13-PTNLD9-TUMOR_peak_24832 chr19 37463973 37464155 + 5.60858 NA intron (NM_001204838, intron 6 of 9) CpG 56833 NM_001204836 374900 Hs.404220 NM_198539 HPRD:15848 ZNF568 - zinc finger protein 568 protein-coding 13-PTNLD9-TUMOR_peak_14014 chr12 120412146 120412261 + 5.60858 NA Intergenic Intergenic -15445 NM_207311 92558 Hs.369763 NM_207311 HPRD:14292 CCDC64 BICDR-1|H_267D11.1 coiled-coil domain containing 64 protein-coding 13-PTNLD9-TUMOR_peak_23589 chr19 1009605 1009736 + 5.60858 NA TTS (NM_033420) TTS (NM_033420) 9233 NM_138690 116444 Hs.660378 NM_138690 ENSG00000116032 GRIN3B GluN3B|NR3B glutamate receptor, ionotropic, N-methyl-D-aspartate 3B protein-coding 13-PTNLD9-TUMOR_peak_54259 chr9 103930159 103930310 + 5.60858 NA intron (NM_207299, intron 1 of 7) THE1B|LTR|ERVL-MaLR -17083 NM_017753 54886 Hs.382683 NM_017753 HPRD:17906 LPPR1 PRG-3 lipid phosphate phosphatase-related protein type 1 protein-coding 13-PTNLD9-TUMOR_peak_28304 chr2 121955027 121955170 + 5.60858 NA Intergenic Intergenic 87680 NM_014553 29842 Hs.156471 NM_014553 HPRD:18175 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2-like 1 protein-coding 13-PTNLD9-TUMOR_peak_1213 chr1 38591862 38592071 + 5.60858 NA Intergenic Intergenic 37063 NR_037432 100500801 NR_037432 miRBase:MI0016060 MIR3659 - microRNA 3659 ncRNA 13-PTNLD9-TUMOR_peak_466 chr1 12911870 12912027 + 5.60858 NA Intergenic AluSg|SINE|Alu -3370 NM_001013631 343069 Hs.502617 NM_001013631 HPRD:15466 HNRNPCL1 HNRPCL1 heterogeneous nuclear ribonucleoprotein C-like 1 protein-coding 13-PTNLD9-TUMOR_peak_39801 chr4 164416174 164416321 + 5.60858 NA intron (NM_018352, intron 1 of 6) intron (NM_018352, intron 1 of 6) 574 NM_018352 55319 Hs.267446 NM_018352 HPRD:07739 TMA16 C4orf43 translation machinery associated 16 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_32517 chr21 45376699 45376843 + 5.60858 NA intron (NM_001037553, intron 1 of 8) MLT1F1|LTR|ERVL-MaLR 31492 NM_001037553 56894 Hs.248785 NM_020132 HPRD:10637 AGPAT3 LPAAT-GAMMA1|LPAAT3 1-acylglycerol-3-phosphate O-acyltransferase 3 protein-coding 13-PTNLD9-TUMOR_peak_10132 chr11 63920562 63920745 + 5.60858 NA intron (NM_014067, intron 1 of 10) intron (NM_014067, intron 1 of 10) 12932 NM_014067 28992 Hs.602898 NM_014067 HPRD:17448 MACROD1 LRP16 MACRO domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_22986 chr18 39918796 39918940 + 5.60858 NA intron (NR_046456, intron 5 of 7) intron (NR_046456, intron 5 of 7) 152235 NR_046457 284260 Hs.652819 NR_046174 ENSG00000267586 LINC00907 - long intergenic non-protein coding RNA 907 ncRNA 13-PTNLD9-TUMOR_peak_25272 chr19 48444685 48444874 + 5.60551 NA Intergenic AluYa5|SINE|Alu 1981 NR_024218 100170219 Hs.560634 NR_024218 SNAR-C4 - small ILF3/NF90-associated RNA C4 snRNA 13-PTNLD9-TUMOR_peak_8330 chr10 112170935 112171152 + 5.60064 NA Intergenic Intergenic -86582 NM_004419 1847 Hs.2128 NM_004419 HPRD:04349 DUSP5 DUSP|HVH3 dual specificity phosphatase 5 protein-coding 13-PTNLD9-TUMOR_peak_33517 chr22 50780636 50780879 + 5.59970 NA promoter-TSS (NM_001242898) promoter-TSS (NM_001242898) -989 NM_014678 9701 Hs.449098 NM_014678 HPRD:11102 PPP6R2 KIAA0685|PP6R2|SAP190|SAPS2 protein phosphatase 6, regulatory subunit 2 protein-coding 13-PTNLD9-TUMOR_peak_43489 chr6 2980445 2980606 + 5.59970 NA Intergenic MER41B|LTR|ERV1 -7676 NR_026855 401232 Hs.720158 NM_207495 HPRD:16819 LINC01011 DKFZP686I15217 long intergenic non-protein coding RNA 1011 ncRNA 13-PTNLD9-TUMOR_peak_25326 chr19 49250116 49250314 + 5.59970 NA promoter-TSS (NM_182575) promoter-TSS (NM_182575) -49 NM_182575 284359 Hs.400688 NM_182575 HPRD:14589 IZUMO1 IZUMO izumo sperm-egg fusion 1 protein-coding 13-PTNLD9-TUMOR_peak_20269 chr17 2797128 2797222 + 5.59970 NA intron (NM_015085, intron 2 of 24) intron (NM_015085, intron 2 of 24) 72014 NR_110818 101927911 Hs.626373 NR_110818 ENSG00000262884 LOC101927911 - uncharacterized LOC101927911 ncRNA 13-PTNLD9-TUMOR_peak_18530 chr16 11726566 11726726 + 5.59970 NA Intergenic Intergenic -35643 NM_003498 8303 Hs.618526 NM_003498 HPRD:04327 SNN - stannin protein-coding 13-PTNLD9-TUMOR_peak_40278 chr5 9623094 9623193 + 5.59970 NA Intergenic L1MB4|LINE|L1 7320 NM_019599 50834 Hs.567492 NM_019599 HPRD:07267 TAS2R1 T2R1|TRB7 taste receptor, type 2, member 1 protein-coding 13-PTNLD9-TUMOR_peak_28050 chr2 111880731 111880825 + 5.59845 NA intron (NM_207002, intron 1 of 3) CpG-15379 2287 NM_001204111 10018 Hs.469658 NM_006538 HPRD:04828 BCL2L11 BAM|BIM|BOD BCL2-like 11 (apoptosis facilitator) protein-coding 13-PTNLD9-TUMOR_peak_23336 chr18 57568135 57568256 + 5.59845 NA intron (NM_021127, intron 1 of 1) intron (NM_021127, intron 1 of 1) 1003 NM_021127 5366 Hs.96 NM_021127 HPRD:12002 PMAIP1 APR|NOXA phorbol-12-myristate-13-acetate-induced protein 1 protein-coding 13-PTNLD9-TUMOR_peak_12670 chr12 48152670 48153008 + 5.59845 NA promoter-TSS (NM_006105) promoter-TSS (NM_006105) 50 NM_001098531 10411 Hs.8578 NM_006105 HPRD:06928 RAPGEF3 CAMP-GEFI|EPAC|EPAC1|HSU79275|bcm910 Rap guanine nucleotide exchange factor (GEF) 3 protein-coding 13-PTNLD9-TUMOR_peak_13645 chr12 104680228 104680411 + 5.59487 NA promoter-TSS (NM_182729) promoter-TSS (NM_182729) -141 NM_182742 7296 Hs.654922 NM_003330 HPRD:03068 TXNRD1 GRIM-12|TR|TR1|TRXR1|TXNR thioredoxin reductase 1 protein-coding 13-PTNLD9-TUMOR_peak_45017 chr6 42104789 42104904 + 5.59425 NA intron (NM_001164446, intron 1 of 4) intron (NM_001164446, intron 1 of 4) 5869 NM_001164446 647024 Hs.444277 NM_001164446 ENSG00000188112 C6orf132 bA7K24.2 chromosome 6 open reading frame 132 protein-coding 13-PTNLD9-TUMOR_peak_48762 chr7 106359082 106359192 + 5.59425 NA Intergenic Intergenic -57503 NM_175884 168455 Hs.29692 NM_175884 HPRD:08202 CCDC71L C7orf74 coiled-coil domain containing 71-like protein-coding 13-PTNLD9-TUMOR_peak_5291 chr1 206809038 206809173 + 5.59425 NA exon (NM_003582, exon 1 of 3) exon (NM_003582, exon 1 of 3) 224 NM_001004023 8444 Hs.164267 NM_003582 HPRD:04607 DYRK3 DYRK5|RED|REDK|hYAK3-2 dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3 protein-coding 13-PTNLD9-TUMOR_peak_33822 chr3 13009481 13009577 + 5.59425 NA promoter-TSS (NM_014869) promoter-TSS (NM_014869) -331 NM_014869 9922 Hs.475506 NM_014869 HPRD:11052 IQSEC1 ARF-GEP100|ARFGEP100|BRAG2|GEP100 IQ motif and Sec7 domain 1 protein-coding 13-PTNLD9-TUMOR_peak_15120 chr13 111357308 111357402 + 5.59425 NA intron (NM_024537, intron 2 of 14) MIRb|SINE|MIR 1125 NM_024537 79587 Hs.508725 NM_024537 HPRD:07763 CARS2 - cysteinyl-tRNA synthetase 2, mitochondrial (putative) protein-coding 13-PTNLD9-TUMOR_peak_33127 chr22 31650032 31650288 + 5.59160 NA intron (NM_001031801, intron 1 of 14) intron (NM_001031801, intron 1 of 14) 5812 NM_016733 3985 Hs.474596 NM_005569 HPRD:03585 LIMK2 - LIM domain kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_18014 chr15 93412596 93412795 + 5.59160 NA Intergenic Intergenic -13378 NR_037600 100507217 Hs.622504 NR_037600 ENSG00000272888 LOC100507217 - uncharacterized LOC100507217 ncRNA 13-PTNLD9-TUMOR_peak_32720 chr22 19097150 19097244 + 5.59160 NA intron (NM_005137, intron 1 of 9) L1MB2|LINE|L1 12770 NR_033674 9993 Hs.517357 NM_005137 HPRD:08999 DGCR2 DGS-C|IDD|LAN|SEZ-12 DiGeorge syndrome critical region gene 2 protein-coding 13-PTNLD9-TUMOR_peak_2440 chr1 91172519 91172732 + 5.59160 NA Intergenic CpG 10169 NM_020063 343472 Hs.451956 NM_020063 BARHL2 - BarH-like homeobox 2 protein-coding 13-PTNLD9-TUMOR_peak_32518 chr21 45395308 45395571 + 5.59160 NA intron (NM_020132, intron 7 of 9) intron (NM_020132, intron 7 of 9) -36767 NM_003274 7109 Hs.126221 NM_003274 HPRD:03656 TRAPPC10 EHOC-1|EHOC1|GT334|TMEM1|TRS130|TRS30 trafficking protein particle complex 10 protein-coding 13-PTNLD9-TUMOR_peak_44966 chr6 41123256 41123373 + 5.59160 NA Intergenic LTR40A1|LTR|ERVL -1227 NM_001271807 340205 Hs.117331 NM_178174 HPRD:11645 TREML1 GLTL1825|PRO3438|TLT-1|TLT1|dJ238O23.3 triggering receptor expressed on myeloid cells-like 1 protein-coding 13-PTNLD9-TUMOR_peak_11343 chr11 117329102 117329242 + 5.59160 NA intron (NM_020693, intron 19 of 32) intron (NM_020693, intron 19 of 32) 130601 NM_014956 22897 Hs.504009 NM_014956 HPRD:10854 CEP164 NPHP15 centrosomal protein 164kDa protein-coding 13-PTNLD9-TUMOR_peak_29407 chr2 193138963 193139062 + 5.59160 NA Intergenic L1PA2|LINE|L1 -79368 NM_016192 23671 Hs.144513 NM_016192 HPRD:05760 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR transmembrane protein with EGF-like and two follistatin-like domains 2 protein-coding 13-PTNLD9-TUMOR_peak_47411 chr7 46555921 46556026 + 5.59160 NA Intergenic ERVL-E-int|LTR|ERVL -595102 NM_001013398 3486 Hs.450230 NM_000598 HPRD:00899 IGFBP3 BP-53|IBP3 insulin-like growth factor binding protein 3 protein-coding 13-PTNLD9-TUMOR_peak_12752 chr12 50784270 50784374 + 5.59160 NA intron (NM_001145475, intron 1 of 7) ERVL-B4-int|LTR|ERVL 6083 NM_001145475 121006 Hs.133187 NM_001145475 ENSG00000185958 FAM186A - family with sequence similarity 186, member A protein-coding 13-PTNLD9-TUMOR_peak_55744 chrX 41125023 41125117 + 5.59160 NA Intergenic Intergenic -67581 NM_001356 1654 Hs.743263 NM_001356 HPRD:02154 DDX3X DBX|DDX14|DDX3|HLP2 DEAD (Asp-Glu-Ala-Asp) box helicase 3, X-linked protein-coding 13-PTNLD9-TUMOR_peak_14680 chr13 44453609 44453703 + 5.59160 NA promoter-TSS (NM_153218) promoter-TSS (NM_153218) 170 NM_144974 160857 Hs.170849 NM_144974 HPRD:13406 CCDC122 - coiled-coil domain containing 122 protein-coding 13-PTNLD9-TUMOR_peak_51101 chr8 68341291 68341393 + 5.59160 NA intron (NM_020361, intron 9 of 10) intron (NM_020361, intron 9 of 10) -85430 NM_006421 10565 Hs.656902 NM_006421 HPRD:09163 ARFGEF1 ARFGEP1|BIG1|P200 ADP-ribosylation factor guanine nucleotide-exchange factor 1 (brefeldin A-inhibited) protein-coding 13-PTNLD9-TUMOR_peak_55488 chrX 2847309 2847502 + 5.59160 NA promoter-TSS (NM_001669) promoter-TSS (NM_001669) 11 NM_001669 414 Hs.528631 NM_001669 HPRD:02048 ARSD ASD arylsulfatase D protein-coding 13-PTNLD9-TUMOR_peak_43254 chr5 177844046 177844144 + 5.59160 NA intron (NM_173465, intron 2 of 28) intron (NM_173465, intron 2 of 28) 173461 NM_173465 91522 Hs.660026 NM_173465 HPRD:16733 COL23A1 - collagen, type XXIII, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_36615 chr3 161632673 161632777 + 5.59160 NA Intergenic Intergenic 418129 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15 otolin 1 protein-coding 13-PTNLD9-TUMOR_peak_663 chr1 23523511 23523613 + 5.59160 NA Intergenic Intergenic -2340 NM_000864 3352 Hs.121482 NM_000864 HPRD:01636 HTR1D 5-HT1D|HT1DA|HTR1DA|HTRL|RDC4 5-hydroxytryptamine (serotonin) receptor 1D, G protein-coupled protein-coding 13-PTNLD9-TUMOR_peak_16424 chr14 90798277 90798567 + 5.59160 NA promoter-TSS (NM_017970) promoter-TSS (NM_017970) 59 NM_017970 55051 Hs.528131 NM_017970 HPRD:12625 NRDE2 C14orf102 NRDE-2, necessary for RNA interference, domain containing protein-coding 13-PTNLD9-TUMOR_peak_32719 chr22 19054162 19054304 + 5.59160 NA intron (NR_033674, intron 2 of 8) intron (NR_033674, intron 2 of 8) -18345 NR_024157 25786 Hs.720269 NR_024157 DGCR11 DGS-D DiGeorge syndrome critical region gene 11 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_10414 chr11 68543624 68543834 + 5.59160 NA intron (NM_001031847, intron 12 of 18) AluJr|SINE|Alu -24741 NM_004923 9633 Hs.145932 NM_004923 HPRD:09186 MTL5 CXCDC2|MTLT|TESMIN metallothionein-like 5, testis-specific (tesmin) protein-coding 13-PTNLD9-TUMOR_peak_17634 chr15 74392511 74392692 + 5.58792 NA Intergenic CpG -17710 NM_001038640 342096 Hs.546408 NM_001038640 ENSG00000159289 GOLGA6A GLP|GOLGA6 golgin A6 family, member A protein-coding 13-PTNLD9-TUMOR_peak_36145 chr3 139653939 139654113 + 5.58792 NA promoter-TSS (NM_022131) promoter-TSS (NM_022131) -1 NM_022131 64084 Hs.158529 NM_022131 CLSTN2 ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma calsyntenin 2 protein-coding 13-PTNLD9-TUMOR_peak_44214 chr6 26195651 26195769 + 5.58724 NA Intergenic Intergenic 3811 NM_003530 8351 Hs.532144 NM_003530 HPRD:11905 HIST1H3D H3/b|H3FB histone cluster 1, H3d protein-coding 13-PTNLD9-TUMOR_peak_35328 chr3 111456688 111456874 + 5.58154 NA intron (NM_001134437, intron 1 of 17) AmnSINE1|SINE|Deu 5454 NM_001134437 90102 Hs.603252 NM_145753 HPRD:06611 PHLDB2 LL5b|LL5beta pleckstrin homology-like domain, family B, member 2 protein-coding 13-PTNLD9-TUMOR_peak_11748 chr12 174884 175045 + 5.58065 NA Intergenic L2b|LINE|L2 -1085 NM_001170738 440073 Hs.536319 NM_015232 ENSG00000120645 IQSEC3 - IQ motif and Sec7 domain 3 protein-coding 13-PTNLD9-TUMOR_peak_55102 chr9 141125301 141125448 + 5.58051 NA intron (NM_001145249, intron 6 of 6) MER21C|LTR|ERVL 18737 NM_001145249 100132403 Hs.741123 NM_001145249 FAM157B - family with sequence similarity 157, member B protein-coding 13-PTNLD9-TUMOR_peak_19669 chr16 69999222 69999414 + 5.57727 NA Intergenic CpG 14429 NM_001271197 348174 Hs.592064 NM_182619 HPRD:17360 CLEC18A MRCL|MRCL1|MRLP2 C-type lectin domain family 18, member A protein-coding 13-PTNLD9-TUMOR_peak_38138 chr4 26224890 26224984 + 5.57690 NA Intergenic Intergenic -96395 NM_203283 3516 Hs.479396 NM_005349 HPRD:00920 RBPJ AOS3|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBPJK|RBPSUH|SUH|csl recombination signal binding protein for immunoglobulin kappa J region protein-coding 13-PTNLD9-TUMOR_peak_40544 chr5 32508311 32508495 + 5.57690 NA Intergenic Intergenic -63559 NM_016107 51663 Hs.435231 NM_016107 HPRD:15730 ZFR SPG71|ZFR1 zinc finger RNA binding protein protein-coding 13-PTNLD9-TUMOR_peak_20444 chr17 8329703 8329834 + 5.57690 NA Intergenic Intergenic -9402 NM_001025579 81565 Hs.372123 NM_030808 HPRD:06340 NDEL1 EOPA|MITAP1|NDE1L1|NDE2|NUDEL nudE neurodevelopment protein 1-like 1 protein-coding 13-PTNLD9-TUMOR_peak_39265 chr4 124339739 124339899 + 5.57690 NA Intergenic Intergenic 19174 NM_005841 10252 Hs.744854 NM_005841 HPRD:06782 SPRY1 hSPRY1 sprouty homolog 1, antagonist of FGF signaling (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_14706 chr13 45903902 45904031 + 5.57690 NA Intergenic Intergenic 7778 NR_002967 677814 Hs.374596 NR_002967 SNORA31 ACA31 small nucleolar RNA, H/ACA box 31 snoRNA 13-PTNLD9-TUMOR_peak_31097 chr20 41248999 41249093 + 5.57690 NA intron (NM_133170, intron 7 of 31) L1PA2|LINE|L1 -65077 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 13-PTNLD9-TUMOR_peak_50720 chr8 41712478 41712602 + 5.57690 NA intron (NM_001142446, intron 1 of 42) MER5A1|DNA|hAT-Charlie 41740 NM_001142446 286 Hs.654438 NM_000037 HPRD:01693 ANK1 ANK|SPH1|SPH2 ankyrin 1, erythrocytic protein-coding 13-PTNLD9-TUMOR_peak_41096 chr5 66507901 66508014 + 5.57690 NA Intergenic MLT2C2|LTR|ERVL -15340 NM_005582 4064 Hs.87205 NM_005582 HPRD:03749 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 13-PTNLD9-TUMOR_peak_8980 chr11 8789456 8789580 + 5.57690 NA promoter-TSS (NR_120590) promoter-TSS (NR_120590) -807 NR_120590 102724784 Hs.613276 NR_120590 LOC102724784 - uncharacterized LOC102724784 ncRNA 13-PTNLD9-TUMOR_peak_21917 chr17 71301345 71301596 + 5.57690 NA intron (NM_012121, intron 1 of 1) intron (NM_012121, intron 1 of 1) 6673 NM_012121 23580 Hs.3903 NM_012121 HPRD:08383 CDC42EP4 BORG4|CEP4|KAIA1777 CDC42 effector protein (Rho GTPase binding) 4 protein-coding 13-PTNLD9-TUMOR_peak_42783 chr5 156985107 156985214 + 5.57690 NA intron (NM_033274, intron 3 of 22) intron (NM_033274, intron 3 of 22) 17671 NM_033274 8728 Hs.483944 NM_023038 HPRD:04704 ADAM19 MADDAM|MLTNB ADAM metallopeptidase domain 19 protein-coding 13-PTNLD9-TUMOR_peak_6744 chr10 26986325 26986439 + 5.57690 NA promoter-TSS (NM_014317) promoter-TSS (NM_014317) -213 NM_014317 23590 Hs.558468 NM_014317 HPRD:09591 PDSS1 COQ1|COQ10D2|DPS|SPS|TPRT|TPT|TPT 1|hDPS1 prenyl (decaprenyl) diphosphate synthase, subunit 1 protein-coding 13-PTNLD9-TUMOR_peak_30117 chr2 238398956 238399114 + 5.57690 NA intron (NR_104019, intron 1 of 16) intron (NR_104019, intron 1 of 16) 3173 NM_001281473 79083 Hs.102406 NM_024101 HPRD:09409 MLPH SLAC2-A melanophilin protein-coding 13-PTNLD9-TUMOR_peak_27788 chr2 99118397 99118603 + 5.57690 NA intron (NM_001134225, intron 1 of 24) intron (NM_001134225, intron 1 of 24) 57179 NM_001134224 3631 Hs.469386 NM_001566 HPRD:02949 INPP4A INPP4|TVAS1 inositol polyphosphate-4-phosphatase, type I, 107kDa protein-coding 13-PTNLD9-TUMOR_peak_21102 chr17 40819578 40819758 + 5.57690 NA TTS (NM_024927) TTS (NM_024927) 8402 NM_016437 27175 Hs.708059 NM_016437 HPRD:05778 TUBG2 - tubulin, gamma 2 protein-coding 13-PTNLD9-TUMOR_peak_12883 chr12 53493226 53493407 + 5.57690 NA intron (NM_002178, intron 1 of 3) intron (NM_002178, intron 1 of 3) 1880 NM_002178 3489 Hs.274313 NM_002178 HPRD:00902 IGFBP6 IBP6 insulin-like growth factor binding protein 6 protein-coding 13-PTNLD9-TUMOR_peak_41782 chr5 113697667 113697908 + 5.57197 NA promoter-TSS (NM_021614) promoter-TSS (NM_021614) -229 NM_021614 3781 Hs.98280 NM_021614 HPRD:09323 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2 protein-coding 13-PTNLD9-TUMOR_peak_29165 chr2 176569041 176569140 + 5.57197 NA Intergenic L1PA2|LINE|L1 297928 NM_030650 80856 Hs.209561 NM_030650 KIAA1715 LNP|LNP1|Ul|ulnaless KIAA1715 protein-coding 13-PTNLD9-TUMOR_peak_17216 chr15 45459656 45459752 + 5.57197 NA 3' UTR (NM_138356, exon 8 of 8) 3' UTR (NM_138356, exon 8 of 8) 13701 NM_001301171 90525 Hs.310399 NM_138356 HPRD:14272 SHF - Src homology 2 domain containing F protein-coding 13-PTNLD9-TUMOR_peak_47312 chr7 42927853 42928126 + 5.57197 NA Intergenic Intergenic 23700 NM_001099858 79020 Hs.698120 NM_024054 HPRD:09861 C7orf25 - chromosome 7 open reading frame 25 protein-coding 13-PTNLD9-TUMOR_peak_24683 chr19 33572070 33572178 + 5.57197 NA exon (NM_018025, exon 1 of 20) exon (NM_018025, exon 1 of 20) 338 NM_018025 55094 Hs.466436 NM_018025 HPRD:11008 GPATCH1 ECGP|GPATC1 G patch domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_49017 chr7 128947890 128948041 + 5.57197 NA intron (NM_001130720, intron 1 of 16) L1MA2|LINE|L1 -59999 NM_001130723 23382 Hs.600789 NM_015328 HPRD:11113 AHCYL2 ADOHCYASE3 adenosylhomocysteinase-like 2 protein-coding 13-PTNLD9-TUMOR_peak_36851 chr3 178341251 178341369 + 5.57197 NA intron (NM_001278911, intron 1 of 4) intron (NM_001278911, intron 1 of 4) 64822 NM_001278911 10242 Hs.478368 NM_005832 HPRD:05557 KCNMB2 - potassium large conductance calcium-activated channel, subfamily M, beta member 2 protein-coding 13-PTNLD9-TUMOR_peak_23483 chr18 74276210 74276347 + 5.57197 NA Intergenic MIRb|SINE|MIR 35666 NR_015417 284276 Hs.390287 NR_015417 ENSG00000263812 LINC00908 - long intergenic non-protein coding RNA 908 ncRNA 13-PTNLD9-TUMOR_peak_49649 chr7 150864383 150864550 + 5.56943 NA exon (NM_001098834, exon 1 of 2) exon (NM_001098834, exon 1 of 2) 169 NM_001098834 2636 NM_001098834 ENSG00000164900 GBX1 Huh-17 gastrulation brain homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_39076 chr4 111117862 111118017 + 5.56943 NA intron (NM_001130721, intron 2 of 4) CpG 1832 NM_001130721 79071 Hs.412939 NM_024090 HPRD:13269 ELOVL6 FACE|FAE|LCE ELOVL fatty acid elongase 6 protein-coding 13-PTNLD9-TUMOR_peak_18275 chr16 2827288 2827556 + 5.56943 NA promoter-TSS (NM_207013) promoter-TSS (NM_207013) -125 NM_207013 6923 Hs.172772 NM_007108 HPRD:02874 TCEB2 ELOB|SIII transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B) protein-coding 13-PTNLD9-TUMOR_peak_45226 chr6 47074427 47074521 + 5.56943 NA Intergenic MLT1C|LTR|ERVL-MaLR -64392 NM_153840 266977 Hs.733762 NM_025048 HPRD:08661 GPR110 KPG_012|PGR19|hGPCR36 G protein-coupled receptor 110 protein-coding 13-PTNLD9-TUMOR_peak_36538 chr3 157828224 157828323 + 5.56943 NA intron (NM_001271838, intron 1 of 9) intron (NM_001271838, intron 1 of 9) 432 NM_016625 51319 Hs.591283 NM_016625 HPRD:18006 RSRC1 SFRS21|SRrp53 arginine/serine-rich coiled-coil 1 protein-coding 13-PTNLD9-TUMOR_peak_46646 chr7 871394 871536 + 5.56506 NA promoter-TSS (NM_001130965) promoter-TSS (NM_001130965) -677 NM_001130965 23353 Hs.438072 NM_025154 HPRD:16257 SUN1 UNC84A Sad1 and UNC84 domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_52877 chr9 20684499 20684801 + 5.56506 NA promoter-TSS (NR_121601) promoter-TSS (NR_121601) 99 NR_121601 101929548 Hs.668302 NR_121601 FOCAD-AS1 - FOCAD antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_46927 chr7 16460250 16460402 + 5.56506 NA intron (NM_001101417, intron 1 of 8) intron (NM_001101417, intron 1 of 8) 621 NM_001101426 729920 Hs.636502 NM_001101417 ISPD MDDGA7|Nip|hCG_1745121 isoprenoid synthase domain containing protein-coding 13-PTNLD9-TUMOR_peak_51824 chr8 124286449 124286544 + 5.56506 NA non-coding (NR_037874, exon 1 of 3) non-coding (NR_037874, exon 1 of 3) 231 NM_001204180 100533106 Hs.707401 NM_001204180 ENSG00000259305 ZHX1-C8orf76 - ZHX1-C8orf76 readthrough protein-coding 13-PTNLD9-TUMOR_peak_36665 chr3 169490597 169490891 + 5.56426 NA promoter-TSS (NR_033703) promoter-TSS (NR_033703) -109 NM_018657 55892 Hs.507025 NM_018657 HPRD:06920 MYNN OSZF|ZBTB31|ZNF902 myoneurin protein-coding 13-PTNLD9-TUMOR_peak_14765 chr13 50698047 50698211 + 5.56254 NA intron (NR_109974, intron 2 of 6) CpG 1548 NR_002612 8847 Hs.547964 NR_002612 DLEU2 1B4|BCMSUN|DLB2|LEU2|LINC00022|MIR15AHG|NCRNA00022|RFP2OS|TRIM13OS deleted in lymphocytic leukemia 2 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_33717 chr3 10050758 10050901 + 5.56254 NA intron (NM_001008737, intron 2 of 3) intron (NM_001008737, intron 2 of 3) 1950 NM_001008737 401052 Hs.662766 NM_001008737 LOC401052 - uncharacterized LOC401052 protein-coding 13-PTNLD9-TUMOR_peak_16921 chr15 30871862 30871973 + 5.55924 NA intron (NR_026858, intron 3 of 4) intron (NR_026858, intron 3 of 4) 7159 NR_026858 89838 Hs.574255 NR_026858 ENSG00000261279 ULK4P1 D-X|FAM7A1 ULK4 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_42979 chr5 170846348 170846478 + 5.55826 NA promoter-TSS (NM_003862) promoter-TSS (NM_003862) -254 NM_003862 8817 Hs.87191 NM_003862 HPRD:04766 FGF18 FGF-18|ZFGF5 fibroblast growth factor 18 protein-coding 13-PTNLD9-TUMOR_peak_31832 chr20 62527859 62527953 + 5.55662 NA intron (NM_025219, intron 1 of 4) L2a|LINE|L2 1451 NM_025219 80331 Hs.164419 NM_025219 HPRD:08539 DNAJC5 CLN4|CLN4B|CSP|DNAJC5A|NCL DnaJ (Hsp40) homolog, subfamily C, member 5 protein-coding 13-PTNLD9-TUMOR_peak_36769 chr3 173115711 173115816 + 5.55662 NA promoter-TSS (NM_014932) promoter-TSS (NM_014932) -475 NM_014932 22871 Hs.478289 NM_014932 HPRD:07195 NLGN1 NL1 neuroligin 1 protein-coding 13-PTNLD9-TUMOR_peak_39119 chr4 114682640 114682734 + 5.55662 NA 5' UTR (NM_172128, exon 1 of 18) 5' UTR (NM_172128, exon 1 of 18) 396 NM_172127 817 Hs.144114 NM_001221 HPRD:09653 CAMK2D CAMKD calcium/calmodulin-dependent protein kinase II delta protein-coding 13-PTNLD9-TUMOR_peak_55745 chrX 41135191 41135317 + 5.55528 NA Intergenic CpG -57397 NM_001356 1654 Hs.743263 NM_001356 HPRD:02154 DDX3X DBX|DDX14|DDX3|HLP2 DEAD (Asp-Glu-Ala-Asp) box helicase 3, X-linked protein-coding 13-PTNLD9-TUMOR_peak_17741 chr15 78955572 78955947 + 5.55528 NA Intergenic AluJb|SINE|Alu -22172 NM_001256567 1143 Hs.624178 NM_000750 HPRD:00337 CHRNB4 - cholinergic receptor, nicotinic, beta 4 (neuronal) protein-coding 13-PTNLD9-TUMOR_peak_11010 chr11 96654267 96654514 + 5.55528 NA Intergenic Intergenic -414349 NR_047481 100874053 Hs.742044 NR_047481 JRKL-AS1 - JRKL antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_9866 chr11 57016687 57016816 + 5.55528 NA Intergenic Intergenic -11824 NM_005161 187 Hs.438311 NM_005161 HPRD:02503 APLNR AGTRL1|APJ|APJR|HG11 apelin receptor protein-coding 13-PTNLD9-TUMOR_peak_26860 chr2 47457686 47457849 + 5.55528 NA intron (NR_110207, intron 1 of 2) intron (NR_110207, intron 1 of 2) -54027 NM_001743 805 Hs.468442 NM_001743 HPRD:00242 CALM2 CAMII|PHKD|PHKD2 calmodulin 2 (phosphorylase kinase, delta) protein-coding 13-PTNLD9-TUMOR_peak_35336 chr3 111545540 111545747 + 5.55528 NA intron (NM_001134437, intron 1 of 17) intron (NM_001134437, intron 1 of 17) -32384 NM_001134438 90102 Hs.603252 NM_145753 HPRD:06611 PHLDB2 LL5b|LL5beta pleckstrin homology-like domain, family B, member 2 protein-coding 13-PTNLD9-TUMOR_peak_5836 chr1 232470763 232470857 + 5.55528 NA Intergenic Intergenic 180433 NM_020808 57568 Hs.745009 NM_020808 HPRD:15346 SIPA1L2 SPAL2 signal-induced proliferation-associated 1 like 2 protein-coding 13-PTNLD9-TUMOR_peak_45663 chr6 87646891 87646988 + 5.55528 NA promoter-TSS (NM_000865) promoter-TSS (NM_000865) -85 NM_000865 3354 Hs.1611 NM_000865 HPRD:01635 HTR1E 5-HT1E 5-hydroxytryptamine (serotonin) receptor 1E, G protein-coupled protein-coding 13-PTNLD9-TUMOR_peak_46467 chr6 161607177 161607375 + 5.55528 NA intron (NM_020133, intron 2 of 8) intron (NM_020133, intron 2 of 8) -24262 NR_024277 79992 Hs.664873 NM_024929 AGPAT4-IT1 C6orf59|NCRNA00241 AGPAT4 intronic transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_32561 chr21 46421042 46421157 + 5.55528 NA intron (NR_024089, intron 1 of 1) intron (NR_024089, intron 1 of 1) 3543 NR_024089 378825 Hs.534828 NR_024089 ENSG00000224930 LINC00162 C21orf113|NCRNA00162|NLC1-C|NLC1C|PRED74 long intergenic non-protein coding RNA 162 ncRNA 13-PTNLD9-TUMOR_peak_48823 chr7 110163045 110163174 + 5.55528 NA Intergenic Intergenic -562839 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3, subunit I pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_48125 chr7 78947088 78947195 + 5.55528 NA intron (NM_001301128, intron 1 of 20) intron (NM_001301128, intron 1 of 20) -135132 NR_038346 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 13-PTNLD9-TUMOR_peak_23264 chr18 55379671 55379897 + 5.55528 NA intron (NM_005603, intron 2 of 27) L1M1|LINE|L1 82250 NM_001242804 100505549 Hs.660645 NM_001242804 LOC100505549 - uncharacterized LOC100505549 protein-coding 13-PTNLD9-TUMOR_peak_32310 chr21 39728069 39728165 + 5.55528 NA Intergenic Intergenic -10119 NR_110545 102724678 Hs.635675 NR_110545 LINC01423 - long intergenic non-protein coding RNA 1423 ncRNA 13-PTNLD9-TUMOR_peak_23368 chr18 60205300 60205451 + 5.55528 NA intron (NM_017742, intron 1 of 13) FRAM|SINE|Alu 14717 NM_017742 54877 Hs.114191 NM_017742 HPRD:11696 ZCCHC2 C18orf49 zinc finger, CCHC domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_17727 chr15 78300495 78300589 + 5.55528 NA intron (NM_144572, intron 10 of 12) intron (NM_144572, intron 10 of 12) -13975 NR_026998 91450 Hs.406766 NR_026998 LOC91450 - uncharacterized LOC91450 ncRNA 13-PTNLD9-TUMOR_peak_33349 chr22 42084746 42084946 + 5.55528 NA promoter-TSS (NM_005008) promoter-TSS (NM_005008) 67 NM_005008 4809 Hs.182255 NM_005008 HPRD:03197 NHP2L1 15.5K|FA-1|FA1|NHPX|OTK27|SNRNP15-5|SNU13|SPAG12|SSFA1 NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_29477 chr2 198779653 198779747 + 5.55528 NA intron (NM_006226, intron 1 of 5) intron (NM_006226, intron 1 of 5) 110274 NM_006226 5334 Hs.153322 NM_006226 PLCL1 PLCE|PLCL|PLDL1|PPP1R127|PRIP phospholipase C-like 1 protein-coding 13-PTNLD9-TUMOR_peak_34400 chr3 45082288 45082433 + 5.55528 NA Intergenic Intergenic 14601 NM_003278 7123 Hs.476092 NM_003278 HPRD:01759 CLEC3B TN|TNA C-type lectin domain family 3, member B protein-coding 13-PTNLD9-TUMOR_peak_34569 chr3 49851331 49851512 + 5.55528 NA promoter-TSS (NM_003335) promoter-TSS (NM_003335) -30 NM_003335 7318 Hs.16695 NM_003335 HPRD:01873 UBA7 D8|UBA1B|UBE1L|UBE2 ubiquitin-like modifier activating enzyme 7 protein-coding 13-PTNLD9-TUMOR_peak_29659 chr2 207450249 207450393 + 5.55528 NA intron (NM_003812, intron 18 of 25) intron (NM_003812, intron 18 of 25) -56821 NM_001102659 200726 Hs.144769 NM_001102659 LOC200726 - hCG1657980 protein-coding 13-PTNLD9-TUMOR_peak_50534 chr8 30357837 30358073 + 5.55528 NA intron (NM_001008712, intron 4 of 6) intron (NM_001008712, intron 4 of 6) -115038 NR_046205 100128750 Hs.126813 NR_046205 ENSG00000254109 RBPMS-AS1 - RBPMS antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_48340 chr7 93980183 93980282 + 5.55528 NA Intergenic Intergenic -43641 NM_000089 1278 Hs.489142 NM_000089 HPRD:00363 COL1A2 OI4 collagen, type I, alpha 2 protein-coding 13-PTNLD9-TUMOR_peak_9057 chr11 11251404 11251527 + 5.55528 NA Intergenic Intergenic 123439 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2, alpha 3 polypeptide protein-coding 13-PTNLD9-TUMOR_peak_29572 chr2 203143244 203143356 + 5.55528 NA intron (NM_015934, intron 3 of 14) intron (NM_015934, intron 3 of 14) 2146 NR_003058 692110 NR_003058 SNORD70 HBII-234 small nucleolar RNA, C/D box 70 snoRNA 13-PTNLD9-TUMOR_peak_13687 chr12 106353988 106354374 + 5.55528 NA Intergenic Intergenic 179630 NM_014840 9891 Hs.524692 NM_014840 HPRD:12171 NUAK1 ARK5 NUAK family, SNF1-like kinase, 1 protein-coding 13-PTNLD9-TUMOR_peak_2232 chr1 77747571 77747678 + 5.55528 NA promoter-TSS (NM_174858) promoter-TSS (NM_174858) -38 NM_174858 26289 Hs.559718 NM_012093 HPRD:10472 AK5 AK6 adenylate kinase 5 protein-coding 13-PTNLD9-TUMOR_peak_47696 chr7 62614984 62615175 + 5.55528 NA Intergenic L1HS|LINE|L1 149355 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 13-PTNLD9-TUMOR_peak_37412 chr3 195749147 195749396 + 5.55528 NA Intergenic LTR13|LTR|ERVK -32121 NR_003264 255812 Hs.566872 NR_003264 ENSG00000185485 SDHAP1 SDHAL1|SDHALP1 succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_32736 chr22 19629046 19629143 + 5.55528 NA Intergenic MER1B|DNA|hAT-Charlie -72893 NM_002688 5413 Hs.728762 NM_002688 HPRD:04100 SEPT5 CDCREL|CDCREL-1|CDCREL1|H5|HCDCREL-1|PNUTL1 septin 5 protein-coding 13-PTNLD9-TUMOR_peak_19841 chr16 79500077 79500327 + 5.55528 NA Intergenic Intergenic 134420 NM_005360 4094 Hs.134859 NM_005360 HPRD:01518 MAF CCA4|c-MAF v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog protein-coding 13-PTNLD9-TUMOR_peak_13974 chr12 117964740 117964871 + 5.55528 NA intron (NM_173598, intron 13 of 19) intron (NM_173598, intron 13 of 19) -165198 NM_001204218 4842 Hs.654410 NM_000620 HPRD:01226 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 (neuronal) protein-coding 13-PTNLD9-TUMOR_peak_38365 chr4 49325817 49325927 + 5.54803 NA Intergenic ACRO1|Satellite|acro 337213 NM_001286791 80157 Hs.479703 NM_025087 HPRD:08638 CWH43 CWH43-C cell wall biogenesis 43 C-terminal homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_3718 chr1 153506281 153506398 + 5.54728 NA TTS (NM_014624) TTS (NM_014624) 2378 NM_014624 6277 Hs.275243 NM_014624 HPRD:00237 S100A6 2A9|5B10|CABP|CACY|PRA S100 calcium binding protein A6 protein-coding 13-PTNLD9-TUMOR_peak_24403 chr19 18499401 18499559 + 5.54537 NA exon (NM_004864, exon 2 of 2) exon (NM_004864, exon 2 of 2) 2108 NR_036156 100422943 NR_036156 MIR3189 - microRNA 3189 ncRNA 13-PTNLD9-TUMOR_peak_48726 chr7 105319365 105319593 + 5.54537 NA intron (NM_020725, intron 3 of 11) intron (NM_020725, intron 3 of 11) 130 NM_138495 222255 Hs.745056 NM_020725 HPRD:12508 ATXN7L1 ATXN7L4 ataxin 7-like 1 protein-coding 13-PTNLD9-TUMOR_peak_33581 chr3 4778351 4778523 + 5.54537 NA intron (NM_001168272, intron 43 of 60) intron (NM_001168272, intron 43 of 60) 14837 NR_004428 100126791 Hs.663059 NR_004428 ENSG00000235947 EGOT EGO|NCRNA00190 eosinophil granule ontogeny transcript (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_50362 chr8 23747139 23747249 + 5.54537 NA Intergenic Intergenic -34874 NM_003155 6781 Hs.25590 NM_003155 HPRD:03115 STC1 STC stanniocalcin 1 protein-coding 13-PTNLD9-TUMOR_peak_22884 chr18 29720084 29720273 + 5.54537 NA Intergenic LTR12C|LTR|ERV1 47609 NM_001191324 51444 Hs.302408 NM_016271 HPRD:11508 RNF138 HSD-4|NARF|STRIN|hNARF ring finger protein 138, E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_34955 chr3 72319315 72319428 + 5.54537 NA Intergenic MIR3|SINE|MIR 118963 NR_038221 201617 Hs.382623 NR_038221 ENSG00000243083 LINC00870 - long intergenic non-protein coding RNA 870 ncRNA 13-PTNLD9-TUMOR_peak_3236 chr1 144461111 144461305 + 5.54537 NA intron (NM_001278267, intron 52 of 130) intron (NM_001278267, intron 52 of 130) -96962 NM_001143883 653505 Hs.573713 NM_178230 ENSG00000255854 PPIAL4B COAS-2|COAS2|PPIAL4|PPIAL4A peptidylprolyl isomerase A (cyclophilin A)-like 4B protein-coding 13-PTNLD9-TUMOR_peak_7910 chr10 86088046 86088517 + 5.54537 NA promoter-TSS (NM_018999) promoter-TSS (NM_018999) -64 NM_001284240 54462 Hs.461988 NM_018999 HPRD:13832 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine-rich protein 2 protein-coding 13-PTNLD9-TUMOR_peak_27154 chr2 68291047 68291152 + 5.54537 NA promoter-TSS (NM_173177) promoter-TSS (NM_173177) -940 NM_001190265 10438 Hs.602900 NM_006333 C1D LRP1|SUN-CoR|SUNCOR|hC1D C1D nuclear receptor corepressor protein-coding 13-PTNLD9-TUMOR_peak_14553 chr13 32519510 32519612 + 5.54537 NA intron (NR_027062, intron 1 of 3) intron (NR_027062, intron 1 of 3) -85876 NM_023037 10129 Hs.507669 NM_023037 HPRD:10821 FRY 13CDNA73|214K23.2|C13orf14|CG003|bA207N4.2|bA37E23.1 furry homolog (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_13230 chr12 67913712 67913870 + 5.54443 NA promoter-TSS (NR_103861) promoter-TSS (NR_103861) -71 NR_103861 100507175 Hs.505986 NR_103861 ENSG00000203585 LOC100507175 - uncharacterized LOC100507175 ncRNA 13-PTNLD9-TUMOR_peak_46935 chr7 16975038 16975309 + 5.54443 NA Intergenic Intergenic -53560 NM_176813 155465 Hs.100686 NM_176813 HPRD:16545 AGR3 AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3 protein-coding 13-PTNLD9-TUMOR_peak_38655 chr4 78315296 78315390 + 5.54443 NA Intergenic HERVK3-int|LTR|ERVK -117564 NM_006419 10563 Hs.100431 NM_006419 HPRD:05513 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 chemokine (C-X-C motif) ligand 13 protein-coding 13-PTNLD9-TUMOR_peak_47938 chr7 73740679 73740877 + 5.54443 NA intron (NM_003388, intron 2 of 16) intron (NM_003388, intron 2 of 16) 36973 NM_003388 7461 Hs.647018 NM_003388 HPRD:09140 CLIP2 CLIP|CLIP-115|CYLN2|WBSCR3|WBSCR4|WSCR3|WSCR4 CAP-GLY domain containing linker protein 2 protein-coding 13-PTNLD9-TUMOR_peak_6388 chr10 6161462 6161711 + 5.54443 NA Intergenic L1MC3|LINE|L1 -25257 NM_001145443 5209 Hs.195471 NM_004566 HPRD:05612 PFKFB3 IPFK2|PFK2 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 protein-coding 13-PTNLD9-TUMOR_peak_18521 chr16 11451822 11452028 + 5.54443 NA Intergenic AluSx|SINE|Alu 12614 NM_152308 116028 Hs.347524 NM_152308 HPRD:14497 RMI2 BLAP18|C16orf75 RecQ mediated genome instability 2 protein-coding 13-PTNLD9-TUMOR_peak_52673 chr9 4740914 4741008 + 5.54443 NA exon (NM_016282, exon 1 of 5) exon (NM_016282, exon 1 of 5) 348 NM_001199852 50808 Hs.732022 NM_016282 AK3 AK3L1|AK6|AKL3L|AKL3L1|FIX adenylate kinase 3 protein-coding 13-PTNLD9-TUMOR_peak_12328 chr12 25642387 25642591 + 5.54443 NA intron (NM_001145728, intron 9 of 9) L1PA2|LINE|L1 63728 NM_001145728 160492 Hs.44647 NM_152590 HPRD:08768 LMNTD1 IFLTD1|PAS1C1 lamin tail domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_29490 chr2 200819943 200820040 + 5.54443 NA promoter-TSS (NM_024520) promoter-TSS (NM_024520) -49 NM_024520 79568 Hs.154494 NM_024520 HPRD:07994 C2orf47 - chromosome 2 open reading frame 47 protein-coding 13-PTNLD9-TUMOR_peak_34650 chr3 52231964 52232119 + 5.54443 NA promoter-TSS (NM_000688) promoter-TSS (NM_000688) -58 NM_000688 211 Hs.476308 NM_000688 HPRD:00505 ALAS1 ALAS|ALAS3|ALASH|MIG4 aminolevulinate, delta-, synthase 1 protein-coding 13-PTNLD9-TUMOR_peak_36699 chr3 170533343 170533437 + 5.54443 NA Intergenic MER1B|DNA|hAT-Charlie 54655 NM_001099645 200916 Hs.380933 NM_001099645 ENSG00000163584 RPL22L1 - ribosomal protein L22-like 1 protein-coding 13-PTNLD9-TUMOR_peak_16319 chr14 77385253 77385485 + 5.54443 NA Intergenic Intergenic 92644 NM_194287 145497 Hs.147276 NM_194287 HPRD:12621 LRRC74A C14orf166B|LRRC74 leucine rich repeat containing 74A protein-coding 13-PTNLD9-TUMOR_peak_25139 chr19 45947687 45947781 + 5.54443 NA Intergenic CpG -20557 NM_001166049 2067 Hs.435981 NM_001983 HPRD:00533 ERCC1 COFS4|RAD10|UV20 excision repair cross-complementation group 1 protein-coding 13-PTNLD9-TUMOR_peak_37038 chr3 185658923 185659032 + 5.54398 NA Intergenic Intergenic -3053 NM_004593 6434 Hs.533122 NM_004593 TRA2B Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B transformer 2 beta homolog (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_24008 chr19 11533018 11533179 + 5.54304 NA intron (NM_145045, intron 10 of 12) intron (NM_145045, intron 10 of 12) -3080 NM_001035223 57139 Hs.375142 NM_001035223 ENSG00000205517 RGL3 - ral guanine nucleotide dissociation stimulator-like 3 protein-coding 13-PTNLD9-TUMOR_peak_50289 chr8 22418614 22418879 + 5.54232 NA intron (NM_005775, intron 5 of 20) intron (NM_005775, intron 5 of 20) -4433 NM_001018003 10174 Hs.528572 NM_005775 HPRD:11535 SORBS3 SCAM-1|SCAM1|SH3D4 sorbin and SH3 domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_5239 chr1 206137232 206137479 + 5.54076 NA Intergenic CpG -1085 NM_001287385 554282 NM_001287385 FAM72C - family with sequence similarity 72, member C protein-coding 13-PTNLD9-TUMOR_peak_2798 chr1 110523796 110523902 + 5.52357 NA Intergenic L2c|LINE|L2 -3538 NM_006621 10768 Hs.743973 NM_006621 HPRD:07613 AHCYL1 DCAL|IRBIT|PPP1R78|PRO0233|XPVKONA adenosylhomocysteinase-like 1 protein-coding 13-PTNLD9-TUMOR_peak_6048 chr1 239979848 239979972 + 5.52357 NA intron (NM_000740, intron 3 of 4) intron (NM_000740, intron 3 of 4) 83262 NR_046582 100873984 Hs.199475 NR_046582 CHRM3-AS1 - CHRM3 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_24065 chr19 12787286 12787398 + 5.51932 NA TTS (NM_001099737) TTS (NM_001099737) 4683 NM_001206974 1725 Hs.79064 NM_001930 HPRD:02969 DHPS DHS|DS|MIG13 deoxyhypusine synthase protein-coding 13-PTNLD9-TUMOR_peak_46647 chr7 872026 872186 + 5.51932 NA promoter-TSS (NM_001130965) promoter-TSS (NM_001130965) -36 NM_001130965 23353 Hs.438072 NM_025154 HPRD:16257 SUN1 UNC84A Sad1 and UNC84 domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_50579 chr8 33330409 33330779 + 5.51932 NA promoter-TSS (NM_032664) promoter-TSS (NM_032664) 70 NM_032664 84750 Hs.458713 NM_032664 ENSG00000172728 FUT10 - fucosyltransferase 10 (alpha (1,3) fucosyltransferase) protein-coding 13-PTNLD9-TUMOR_peak_49497 chr7 143219800 143219920 + 5.51932 NA non-coding (NR_033897, exon 5 of 5) non-coding (NR_033897, exon 5 of 5) 44894 NM_176883 259287 Hs.650648 NM_176883 HPRD:18151 TAS2R41 T2R41|T2R59 taste receptor, type 2, member 41 protein-coding 13-PTNLD9-TUMOR_peak_525 chr1 16499723 16499905 + 5.51932 NA Intergenic Intergenic -17232 NM_004431 1969 Hs.171596 NM_004431 HPRD:01494 EPHA2 ARCC2|CTPA|CTPP1|CTRCT6|ECK EPH receptor A2 protein-coding 13-PTNLD9-TUMOR_peak_41456 chr5 83094832 83094926 + 5.51916 NA Intergenic L1PA2|LINE|L1 -77983 NM_001884 1404 Hs.2799 NM_001884 HPRD:00275 HAPLN1 CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 13-PTNLD9-TUMOR_peak_2599 chr1 97658560 97658701 + 5.51916 NA exon (NM_000110, exon 20 of 23) exon (NM_000110, exon 20 of 23) 97151 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_1926 chr1 58825278 58825382 + 5.51916 NA Intergenic Intergenic -109119 NM_021080 1600 Hs.477370 NM_021080 HPRD:04582 DAB1 - Dab, reelin signal transducer, homolog 1 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_17101 chr15 41149915 41150065 + 5.51916 NA TTS (NM_181642) TTS (NM_181642) 13347 NM_001032367 6692 Hs.233950 NM_003710 HPRD:05494 SPINT1 HAI|HAI1|MANSC2 serine peptidase inhibitor, Kunitz type 1 protein-coding 13-PTNLD9-TUMOR_peak_31703 chr20 57117316 57117504 + 5.51916 NA intron (NR_034147, intron 5 of 6) intron (NR_034147, intron 5 of 6) 26975 NR_034147 149773 Hs.685214 NR_034147 ENSG00000231290 APCDD1L-AS1 - APCDD1L antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_687 chr1 24257859 24257999 + 5.51916 NA Intergenic Intergenic 2369 NR_039615 100616492 NR_039615 miRBase:MI0016756 MIR378F - microRNA 378f ncRNA 13-PTNLD9-TUMOR_peak_4582 chr1 179555402 179555650 + 5.51916 NA Intergenic CpG -5222 NM_001199091 163589 Hs.197354 NM_173533 HPRD:15483 TDRD5 TUDOR3 tudor domain containing 5 protein-coding 13-PTNLD9-TUMOR_peak_32064 chr21 29705909 29706367 + 5.51916 NA Intergenic Intergenic -205502 NR_026553 118421 Hs.438549 NR_026552 HPRD:10733 LINC00161 C21orf100|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 13-PTNLD9-TUMOR_peak_44511 chr6 31082902 31083002 + 5.51916 NA TTS (NM_001264) TTS (NM_001264) 344 NM_014068 170679 Hs.310958 NM_014068 HPRD:17920 PSORS1C1 C6orf16|SEEK1 psoriasis susceptibility 1 candidate 1 protein-coding 13-PTNLD9-TUMOR_peak_26500 chr2 31021492 31021743 + 5.51916 NA intron (NM_144575, intron 1 of 22) intron (NM_144575, intron 1 of 22) 8694 NM_144575 92291 Hs.660911 NM_144575 HPRD:07008 CAPN13 - calpain 13 protein-coding 13-PTNLD9-TUMOR_peak_7852 chr10 80922730 80922886 + 5.51916 NA intron (NM_020338, intron 4 of 24) intron (NM_020338, intron 4 of 24) 94016 NM_020338 57178 Hs.193118 NM_020338 HPRD:12115 ZMIZ1 MIZ|RAI17|TRAFIP10|ZIMP10|hZIMP10 zinc finger, MIZ-type containing 1 protein-coding 13-PTNLD9-TUMOR_peak_36905 chr3 181852996 181853099 + 5.51916 NA Intergenic Intergenic 182895 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 13-PTNLD9-TUMOR_peak_53960 chr9 93204199 93204366 + 5.51916 NA Intergenic Intergenic -8511 NR_109795 101927873 Hs.598482 NR_109795 LINC01508 - long intergenic non-protein coding RNA 1508 ncRNA 13-PTNLD9-TUMOR_peak_8441 chr10 120595253 120595419 + 5.51916 NA Intergenic Intergenic -80578 NM_153810 143384 Hs.420024 NM_153810 HPRD:12576 CACUL1 C10orf46|CAC1 CDK2-associated, cullin domain 1 protein-coding 13-PTNLD9-TUMOR_peak_2050 chr1 64135114 64135345 + 5.51916 NA Intergenic Intergenic 46342 NM_001172818 5236 Hs.1869 NM_002633 HPRD:01389 PGM1 CDG1T|GSD14 phosphoglucomutase 1 protein-coding 13-PTNLD9-TUMOR_peak_26598 chr2 37763204 37763298 + 5.51916 NA Intergenic AluY|SINE|Alu 136091 NM_006449 10602 Hs.369574 NM_006449 HPRD:09364 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein (Rho GTPase binding) 3 protein-coding 13-PTNLD9-TUMOR_peak_11159 chr11 109870816 109871062 + 5.51916 NA Intergenic AmnSINE1|SINE|Deu -93148 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 13-PTNLD9-TUMOR_peak_30274 chr20 1811003 1811210 + 5.51916 NA Intergenic Intergenic -50714 NR_037142 100289473 Hs.641525 NR_037142 ENSG00000232528 LOC100289473 - cytoskeleton associated protein 2-like pseudogene pseudo 13-PTNLD9-TUMOR_peak_47429 chr7 47497727 47497922 + 5.51916 NA intron (NM_022748, intron 4 of 30) MIRb|SINE|MIR 123918 NM_022748 64759 Hs.520814 NM_022748 ENSG00000136205 TNS3 TEM6|TENS1 tensin 3 protein-coding 13-PTNLD9-TUMOR_peak_21616 chr17 56401759 56401991 + 5.51916 NA promoter-TSS (NR_038410) promoter-TSS (NR_038410) -936 NR_038410 100506779 Hs.718477 NR_038410 ENSG00000265148 BZRAP1-AS1 - BZRAP1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_16359 chr14 79230668 79230767 + 5.51916 NA intron (NR_073547, intron 8 of 20) intron (NR_073547, intron 8 of 20) 360643 NM_004796 9369 Hs.368307 NM_004796 NRXN3 C14orf60 neurexin 3 protein-coding 13-PTNLD9-TUMOR_peak_46944 chr7 17409489 17409600 + 5.51916 NA Intergenic Intergenic -4997 NR_110014 102659288 Hs.559488 NR_110014 LOC102659288 - uncharacterized LOC102659288 ncRNA 13-PTNLD9-TUMOR_peak_53758 chr9 84107959 84108225 + 5.51916 NA Intergenic Intergenic 195504 NM_005077 7088 Hs.197320 NM_005077 HPRD:02557 TLE1 ESG|ESG1|GRG1 transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_22762 chr18 20612440 20612585 + 5.51916 NA Intergenic MIR3|SINE|MIR 98673 NM_203291 5932 Hs.546282 NM_002894 HPRD:04990 RBBP8 COM1|CTIP|JWDS|RIM|SAE2|SCKL2 retinoblastoma binding protein 8 protein-coding 13-PTNLD9-TUMOR_peak_11181 chr11 111054644 111054738 + 5.51916 NA Intergenic MSTB-int|LTR|ERVL-MaLR -72016 NM_198498 341032 Hs.298685 NM_198498 HPRD:14663 C11orf53 - chromosome 11 open reading frame 53 protein-coding 13-PTNLD9-TUMOR_peak_9692 chr11 46358381 46358552 + 5.51673 NA intron (NM_201532, intron 1 of 30) AluJb|SINE|Alu 4011 NM_201532 8525 Hs.502461 NM_003646 HPRD:03260 DGKZ DAGK5|DAGK6|DGK-ZETA|hDGKzeta diacylglycerol kinase, zeta protein-coding 13-PTNLD9-TUMOR_peak_36216 chr3 141613717 141613893 + 5.51673 NA intron (NM_001679, intron 1 of 6) Tigger3b|DNA|TcMar-Tigger 18335 NM_001679 483 Hs.477789 NM_001679 HPRD:03521 ATP1B3 ATPB-3|CD298 ATPase, Na+/K+ transporting, beta 3 polypeptide protein-coding 13-PTNLD9-TUMOR_peak_46519 chr6 166972829 166972959 + 5.51673 NA intron (NM_001006932, intron 2 of 21) intron (NM_001006932, intron 2 of 21) -49973 NR_031734 100302141 NR_031734 MIR1913 MIRN1913|hsa-mir-1913 microRNA 1913 ncRNA 13-PTNLD9-TUMOR_peak_22551 chr18 9615155 9615287 + 5.51673 NA promoter-TSS (NM_005134) promoter-TSS (NM_005134) -41 NR_110774 101927323 Hs.151204 NR_110773 ENSG00000263627 PPP4R1-AS1 - PPP4R1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_16037 chr14 65222615 65222907 + 5.51673 NA intron (NM_001024858, intron 31 of 34) LTR60|LTR|ERV1 29643 NR_107009 102465841 NR_107009 MIR7855 hsa-mir-7855 microRNA 7855 ncRNA 13-PTNLD9-TUMOR_peak_20382 chr17 7196406 7196692 + 5.51673 NA intron (NM_015982, intron 2 of 8) intron (NM_015982, intron 2 of 8) 1327 NM_015982 51087 Hs.567494 NM_015982 HPRD:18311 YBX2 CONTRIN|CSDA3|DBPC|MSY2 Y box binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_51439 chr8 102167336 102167461 + 5.51673 NA Intergenic Intergenic 50562 NM_001267708 51123 Hs.374485 NM_016096 HPRD:13688 ZNF706 PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 13-PTNLD9-TUMOR_peak_12093 chr12 8851171 8851273 + 5.51673 NA intron (NM_001297776, intron 1 of 5) CpG 726 NM_001297776 57494 Hs.504670 NM_020734 HPRD:13844 RIMKLB FAM80B|NAAGS|NAAGS-I ribosomal modification protein rimK-like family member B protein-coding 13-PTNLD9-TUMOR_peak_21092 chr17 40672154 40672349 + 5.51673 NA intron (NM_001130021, intron 21 of 21) intron (NM_001130021, intron 21 of 21) 6045 NR_049808 100847046 NR_049808 MIR5010 - microRNA 5010 ncRNA 13-PTNLD9-TUMOR_peak_28981 chr2 166651148 166651346 + 5.51594 NA promoter-TSS (NM_004482) promoter-TSS (NM_004482) -444 NM_004482 2591 Hs.170986 NM_004482 HPRD:03453 GALNT3 GalNAc-T3|HFTC|HHS polypeptide N-acetylgalactosaminyltransferase 3 protein-coding 13-PTNLD9-TUMOR_peak_22372 chr17 81014069 81014163 + 5.51594 NA Intergenic Intergenic -4430 NM_001009905 146712 Hs.607824 NM_001009905 HPRD:14071 B3GNTL1 B3GNT8 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1 protein-coding 13-PTNLD9-TUMOR_peak_9237 chr11 18405856 18406064 + 5.51594 NA Intergenic Intergenic -9976 NM_001165416 3939 Hs.2795 NM_005566 HPRD:01025 LDHA GSD11|HEL-S-133P|LDH1|LDHM lactate dehydrogenase A protein-coding 13-PTNLD9-TUMOR_peak_27039 chr2 62806241 62806361 + 5.51497 NA Intergenic AluSz|SINE|Alu -72697 NM_198276 200728 Hs.308028 NM_198276 HPRD:15528 TMEM17 - transmembrane protein 17 protein-coding 13-PTNLD9-TUMOR_peak_53708 chr9 80084534 80084805 + 5.51497 NA intron (NR_121184, intron 2 of 4) intron (NR_121184, intron 2 of 4) 22104 NR_121184 101927422 Hs.434324 NR_121184 ENSG00000231373 GNA14-AS1 - GNA14 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_35428 chr3 113933119 113933275 + 5.51497 NA Intergenic Intergenic -14943 NM_001282563 1814 Hs.121478 NM_000796 HPRD:00540 DRD3 D3DR|ETM1|FET1 dopamine receptor D3 protein-coding 13-PTNLD9-TUMOR_peak_55907 chrX 55026209 55026484 + 5.51497 NA promoter-TSS (NM_001271748) promoter-TSS (NM_001271748) -410 NM_014481 27301 Hs.659558 NM_014481 APEX2 APE2|APEXL2|XTH2|ZGRF2 APEX nuclease (apurinic/apyrimidinic endonuclease) 2 protein-coding 13-PTNLD9-TUMOR_peak_47477 chr7 50570161 50570351 + 5.51497 NA intron (NM_001082971, intron 7 of 14) intron (NM_001082971, intron 7 of 14) -29201 NR_033845 100129427 Hs.680434 NR_033845 ENSG00000226122 DDC-AS1 - DDC antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_51160 chr8 74846524 74846631 + 5.51497 NA Intergenic AluY|SINE|Alu 37566 NM_001204861 6921 Hs.533437 NM_005648 HPRD:02875 TCEB1 SIII|eloC transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C) protein-coding 13-PTNLD9-TUMOR_peak_53193 chr9 37761631 37761777 + 5.51497 NA intron (NR_104612, intron 1 of 8) AluSq2|SINE|Alu 7904 NM_001286954 158234 Hs.655614 NM_144964 HPRD:15242 TRMT10B RG9MTD3|bA3J10.9 tRNA methyltransferase 10 homolog B (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_22922 chr18 33077296 33077390 + 5.51497 NA intron (NM_001098817, intron 1 of 6) intron (NM_001098817, intron 1 of 6) 612 NM_001098817 125476 Hs.464903 NM_194281 HPRD:10719 INO80C C18orf37|IES6|hIes6 INO80 complex subunit C protein-coding 13-PTNLD9-TUMOR_peak_6293 chr10 3169268 3169394 + 5.51497 NA intron (NM_001242339, intron 18 of 23) intron (NM_001242339, intron 18 of 23) -14462 NR_038284 100507034 Hs.665365 NR_038284 ENSG00000237399 PITRM1-AS1 - PITRM1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_16621 chr14 103143728 103143916 + 5.51497 NA intron (NM_015156, intron 2 of 11) SVA_D|Other|Other 84826 NM_015156 23186 Hs.510521 NM_015156 HPRD:09645 RCOR1 COREST|RCOR REST corepressor 1 protein-coding 13-PTNLD9-TUMOR_peak_20949 chr17 36715727 36715821 + 5.51497 NA intron (NM_025248, intron 10 of 18) CpG 46409 NM_025248 80725 Hs.448872 NM_025248 HPRD:11589 SRCIN1 P140|SNIP SRC kinase signaling inhibitor 1 protein-coding 13-PTNLD9-TUMOR_peak_18271 chr16 2743968 2744100 + 5.51497 NA intron (NM_018992, intron 1 of 5) intron (NM_018992, intron 1 of 5) 11539 NM_018992 54442 Hs.61960 NM_018992 HPRD:13768 KCTD5 - potassium channel tetramerization domain containing 5 protein-coding 13-PTNLD9-TUMOR_peak_14165 chr12 123429251 123429370 + 5.51497 NA intron (NM_001243013, intron 6 of 10) intron (NM_001243013, intron 6 of 10) 21746 NM_203444 23457 Hs.511951 NM_019624 HPRD:09262 ABCB9 EST122234|TAPL ATP-binding cassette, sub-family B (MDR/TAP), member 9 protein-coding 13-PTNLD9-TUMOR_peak_33441 chr22 46392488 46392608 + 5.51497 NA Intergenic Intergenic -9948 NR_027240 730668 Hs.640071 NR_027240 LOC730668 - dynein heavy chain -like pseudogene pseudo 13-PTNLD9-TUMOR_peak_4596 chr1 180087027 180087146 + 5.51497 NA Intergenic HAL1|LINE|L1 -36882 NM_002826 5768 Hs.744925 NM_002826 HPRD:06785 QSOX1 Q6|QSCN6 quiescin Q6 sulfhydryl oxidase 1 protein-coding 13-PTNLD9-TUMOR_peak_49842 chr7 157518659 157518765 + 5.51497 NA intron (NM_130842, intron 11 of 21) L1M2|LINE|L1 -128565 NR_038966 100506585 Hs.661265 NR_038966 ENSG00000233038 LOC100506585 - uncharacterized LOC100506585 ncRNA 13-PTNLD9-TUMOR_peak_17767 chr15 80287119 80287300 + 5.51497 NA Intergenic Intergenic -23566 NM_001114735 597 Hs.227817 NM_004049 HPRD:03034 BCL2A1 ACC-1|ACC-2|BCL2L5|BFL1|GRS|HBPA1 BCL2-related protein A1 protein-coding 13-PTNLD9-TUMOR_peak_32405 chr21 43198444 43198598 + 5.51497 NA Intergenic CpG -11272 NM_020639 54101 Hs.517310 NM_020639 HPRD:10419 RIPK4 ANKK2|ANKRD3|DIK|NKRD3|PKK|PPS2|RIP4 receptor-interacting serine-threonine kinase 4 protein-coding 13-PTNLD9-TUMOR_peak_17718 chr15 77838512 77838623 + 5.51497 NA Intergenic Intergenic 86302 NM_032808 84894 Hs.656765 NM_032808 HPRD:14322 LINGO1 LERN1|LRRN6A|UNQ201 leucine rich repeat and Ig domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_17645 chr15 74666081 74666175 + 5.51497 NA Intergenic Intergenic -6047 NM_000781 1583 Hs.303980 NM_000781 HPRD:00326 CYP11A1 CYP11A|CYPXIA1|P450SCC cytochrome P450, family 11, subfamily A, polypeptide 1 protein-coding 13-PTNLD9-TUMOR_peak_49466 chr7 142607252 142607555 + 5.51441 NA intron (NM_019841, intron 13 of 14) Plat_L3|LINE|CR1 23417 NM_019841 56302 Hs.283369 NM_019841 HPRD:05981 TRPV5 CAT2|ECAC1|OTRPC3 transient receptor potential cation channel, subfamily V, member 5 protein-coding 13-PTNLD9-TUMOR_peak_56746 chrX 154115348 154115530 + 5.50664 NA promoter-TSS (NM_019863) promoter-TSS (NM_019863) 294 NR_036259 100422985 NR_036259 miRBase:MI0015971 MIR1184-2 - microRNA 1184-2 ncRNA 13-PTNLD9-TUMOR_peak_30725 chr20 30154734 30154946 + 5.50572 NA TTS (NR_046853) TTS (NR_046853) 6226 NR_046853 100874042 Hs.743198 NR_046853 ENSG00000230613 HM13-AS1 - HM13 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_28256 chr2 121010705 121011007 + 5.50572 NA intron (NM_002881, intron 1 of 4) CpG 442 NM_002881 5899 Hs.469820 NM_002881 HPRD:01550 RALB - v-ral simian leukemia viral oncogene homolog B protein-coding 13-PTNLD9-TUMOR_peak_3864 chr1 155248320 155248449 + 5.50572 NA intron (NR_073074, intron 1 of 7) intron (NR_073074, intron 1 of 7) 1166 NM_020897 57657 Hs.706960 NM_020897 HPRD:17093 HCN3 - hyperpolarization activated cyclic nucleotide-gated potassium channel 3 protein-coding 13-PTNLD9-TUMOR_peak_19219 chr16 46408196 46408526 + 5.50406 NA Intergenic HSATII|Satellite|Satellite 194648 NR_026556 124149 Hs.97414 NM_001004299 ANKRD26P1 - ankyrin repeat domain 26 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_48812 chr7 108168841 108169063 + 5.49892 NA promoter-TSS (NM_001256011) promoter-TSS (NM_001256011) -347 NM_001256011 50640 Hs.617340 NM_015723 HPRD:13741 PNPLA8 IPLA2(GAMMA)|IPLA2-2|IPLA2G|iPLA2gamma patatin-like phospholipase domain containing 8 protein-coding 13-PTNLD9-TUMOR_peak_43046 chr5 172329748 172330100 + 5.49892 NA intron (NM_001031711, intron 3 of 9) intron (NM_001031711, intron 3 of 9) 55854 NR_026683 100268168 Hs.519766 NR_026682 ENSG00000204758 LOC100268168 - uncharacterized LOC100268168 ncRNA 13-PTNLD9-TUMOR_peak_31821 chr20 62367880 62367996 + 5.49791 NA promoter-TSS (NM_017806) promoter-TSS (NM_017806) -40 NM_017806 54923 Hs.233220 NM_017806 HPRD:07904 LIME1 LIME|LP8067|dJ583P15.4 Lck interacting transmembrane adaptor 1 protein-coding 13-PTNLD9-TUMOR_peak_27726 chr2 97171116 97171224 + 5.49737 NA promoter-TSS (NM_001285485) promoter-TSS (NM_001285485) -48 NM_001285485 93082 Hs.149219 NM_001080535 HPRD:14296 NEURL3 LINCR neuralized E3 ubiquitin protein ligase 3 protein-coding 13-PTNLD9-TUMOR_peak_9463 chr11 33656181 33656294 + 5.49737 NA intron (NM_012194, intron 15 of 19) intron (NM_012194, intron 15 of 19) 66049 NM_001166692 100131378 Hs.709466 NM_001166692 C11orf91 - chromosome 11 open reading frame 91 protein-coding 13-PTNLD9-TUMOR_peak_10023 chr11 61583836 61583993 + 5.49737 NA promoter-TSS (NM_001281502) promoter-TSS (NM_001281502) 38 NM_001281502 9415 Hs.502745 NM_004265 HPRD:05854 FADS2 D6D|DES6|FADSD6|LLCDL2|SLL0262|TU13 fatty acid desaturase 2 protein-coding 13-PTNLD9-TUMOR_peak_5300 chr1 207069252 207069507 + 5.49737 NA Intergenic Intergenic -1409 NM_001185156 11009 Hs.58831 NM_006850 HPRD:04995 IL24 C49A|FISP|IL10B|MDA7|MOB5|ST16 interleukin 24 protein-coding 13-PTNLD9-TUMOR_peak_26337 chr2 25535213 25535353 + 5.49494 NA intron (NM_175629, intron 2 of 22) intron (NM_175629, intron 2 of 22) 16307 NR_031570 100302246 NR_031570 miRBase:MI0003815 MIR1301 MIRN1301|hsa-mir-1301 microRNA 1301 ncRNA 13-PTNLD9-TUMOR_peak_14140 chr12 122751496 122751617 + 5.49494 NA promoter-TSS (NM_022916) promoter-TSS (NM_022916) -488 NM_022916 65082 Hs.592009 NM_022916 HPRD:15651 VPS33A - vacuolar protein sorting 33 homolog A (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_45612 chr6 83106753 83106920 + 5.49485 NA Intergenic Intergenic 32875 NM_001166392 7162 Hs.82128 NM_006670 HPRD:01837 TPBG 5T4|5T4AG|M6P1|WAIF1 trophoblast glycoprotein protein-coding 13-PTNLD9-TUMOR_peak_29824 chr2 219151650 219151797 + 5.49485 NA intron (NM_022152, intron 1 of 11) intron (NM_022152, intron 1 of 11) 5557 NM_022152 64114 Hs.591605 NM_022152 HPRD:17884 TMBIM1 LFG3|MST100|MSTP100|RECS1 transmembrane BAX inhibitor motif containing 1 protein-coding 13-PTNLD9-TUMOR_peak_2638 chr1 100504070 100504270 + 5.49485 NA intron (NM_033055, intron 1 of 11) CpG 381 NM_033055 64645 Hs.124156 NM_033055 HPRD:11022 HIAT1 - hippocampus abundant transcript 1 protein-coding 13-PTNLD9-TUMOR_peak_32818 chr22 21312163 21312261 + 5.48891 NA intron (NR_110537, intron 1 of 1) intron (NR_110537, intron 1 of 1) 832 NR_110537 101928891 Hs.648264 NR_110537 LOC101928891 - uncharacterized LOC101928891 ncRNA 13-PTNLD9-TUMOR_peak_29178 chr2 177134106 177134205 + 5.48891 NA promoter-TSS (NM_006554) promoter-TSS (NM_006554) 32 NM_006554 10651 Hs.470728 NM_006554 HPRD:09777 MTX2 - metaxin 2 protein-coding 13-PTNLD9-TUMOR_peak_47130 chr7 28448902 28449025 + 5.48891 NA intron (NM_182899, intron 1 of 9) CpG -3181 NM_182898 9586 Hs.437075 NM_004904 HPRD:09896 CREB5 CRE-BPA cAMP responsive element binding protein 5 protein-coding 13-PTNLD9-TUMOR_peak_35024 chr3 75667934 75668060 + 5.48891 NA Intergenic CpG -11917 NR_031714 100302212 NR_031714 miRBase:MI0006657 MIR1324 MIRN1324|hsa-mir-1324 microRNA 1324 ncRNA 13-PTNLD9-TUMOR_peak_40623 chr5 36693378 36693479 + 5.48891 NA Intergenic Intergenic 86971 NM_001289940 6507 Hs.481918 NM_004172 HPRD:02523 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 (glial high affinity glutamate transporter), member 3 protein-coding 13-PTNLD9-TUMOR_peak_48157 chr7 80896919 80897045 + 5.48891 NA Intergenic LTR18A|LTR|ERVL -348315 NM_006379 10512 Hs.269109 NM_006379 HPRD:04034 SEMA3C SEMAE|SemE sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C protein-coding 13-PTNLD9-TUMOR_peak_27927 chr2 106809485 106809615 + 5.48891 NA intron (NR_045607, intron 1 of 13) intron (NR_045607, intron 1 of 13) 1245 NR_045607 80146 Hs.469561 NM_025076 HPRD:15642 UXS1 SDR6E1|UGD UDP-glucuronate decarboxylase 1 protein-coding 13-PTNLD9-TUMOR_peak_23160 chr18 47448694 47448818 + 5.48891 NA intron (NM_001080467, intron 17 of 39) intron (NM_001080467, intron 17 of 39) 108363 NR_117096 103091864 Hs.646459 NR_117096 SNHG22 SCARNA17HG small nucleolar RNA host gene 22 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_48970 chr7 128023953 128024088 + 5.48891 NA Intergenic Intergenic 22004 NM_001142574 3614 Hs.654401 NM_000883 HPRD:08853 IMPDH1 IMPD|IMPD1|LCA11|RP10|sWSS2608 IMP (inosine 5'-monophosphate) dehydrogenase 1 protein-coding 13-PTNLD9-TUMOR_peak_29367 chr2 191711581 191711805 + 5.48891 NA Intergenic CR1_Mam|LINE|CR1 -33854 NM_001256310 2744 Hs.116448 NM_014905 HPRD:00700 GLS AAD20|GAC|GAM|GLS1|KGA glutaminase protein-coding 13-PTNLD9-TUMOR_peak_36062 chr3 136581578 136581693 + 5.48879 NA promoter-TSS (NR_110177) promoter-TSS (NR_110177) 585 NM_006153 4690 Hs.126889 NM_006153 HPRD:02740 NCK1 NCK|NCKalpha|nck-1 NCK adaptor protein 1 protein-coding 13-PTNLD9-TUMOR_peak_22056 chr17 74275712 74275806 + 5.48391 NA intron (NM_032134, intron 12 of 18) intron (NM_032134, intron 12 of 18) 14473 NM_182565 283991 Hs.744981 NM_182565 HPRD:14533 UBALD2 FAM100B UBA-like domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_19386 chr16 55542921 55543025 + 5.48391 NA promoter-TSS (NM_017839) promoter-TSS (NM_017839) 60 NM_017839 54947 Hs.460857 NM_017839 HPRD:07913 LPCAT2 AYTL1|LysoPAFAT lysophosphatidylcholine acyltransferase 2 protein-coding 13-PTNLD9-TUMOR_peak_38977 chr4 103266707 103266801 + 5.48391 NA promoter-TSS (NM_001135147) promoter-TSS (NM_001135147) -99 NM_001135146 64116 Hs.288034 NM_022154 HPRD:12286 SLC39A8 BIGM103|LZT-Hs6|ZIP8 solute carrier family 39 (zinc transporter), member 8 protein-coding 13-PTNLD9-TUMOR_peak_54415 chr9 112829346 112829456 + 5.48391 NA intron (NM_001004065, intron 1 of 3) intron (NM_001004065, intron 1 of 3) 18523 NM_001198656 11217 Hs.591908 NM_001004065 ENSG00000241978 AKAP2 AKAP-2|AKAPKL|PRKA2 A kinase (PRKA) anchor protein 2 protein-coding 13-PTNLD9-TUMOR_peak_40514 chr5 31107351 31107472 + 5.48391 NA Intergenic Intergenic -86351 NM_004932 1004 Hs.124776 NM_004932 HPRD:04305 CDH6 CAD6|KCAD cadherin 6, type 2, K-cadherin (fetal kidney) protein-coding 13-PTNLD9-TUMOR_peak_23315 chr18 56791111 56791213 + 5.48391 NA Intergenic Intergenic -15963 NM_033280 90701 Hs.45107 NM_033280 HPRD:15310 SEC11C SEC11L3|SPC21|SPCS4C SEC11 homolog C (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_570 chr1 17846622 17846869 + 5.48391 NA Intergenic Intergenic -19585 NM_018125 55160 Hs.443460 NM_018125 HPRD:07679 ARHGEF10L GrinchGEF Rho guanine nucleotide exchange factor (GEF) 10-like protein-coding 13-PTNLD9-TUMOR_peak_24899 chr19 38987834 38987942 + 5.48391 NA intron (NM_000540, intron 42 of 105) intron (NM_000540, intron 42 of 105) 63548 NM_001042723 6261 Hs.466664 NM_000540 HPRD:01618 RYR1 CCO|MHS|MHS1|PPP1R137|RYDR|RYR|RYR-1|SKRR ryanodine receptor 1 (skeletal) protein-coding 13-PTNLD9-TUMOR_peak_7183 chr10 45297495 45297686 + 5.48391 NA Intergenic Intergenic -109174 NM_001123376 643236 Hs.292788 NM_001123376 TMEM72 C10orf127|KSP37|bA285G1.3 transmembrane protein 72 protein-coding 13-PTNLD9-TUMOR_peak_16034 chr14 65203531 65203718 + 5.48391 NA intron (NM_015549, intron 11 of 14) intron (NM_015549, intron 11 of 14) 32431 NM_015549 26030 Hs.509637 NM_015549 HPRD:17861 PLEKHG3 ARHGEF43|KIAA0599 pleckstrin homology domain containing, family G (with RhoGef domain) member 3 protein-coding 13-PTNLD9-TUMOR_peak_39275 chr4 124815861 124815978 + 5.48391 NA intron (NR_027105, intron 3 of 4) AluYc|SINE|Alu 120500 NR_027106 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 13-PTNLD9-TUMOR_peak_18807 chr16 24186450 24186553 + 5.48391 NA intron (NM_212535, intron 12 of 16) intron (NM_212535, intron 12 of 16) -80373 NM_006539 10368 Hs.7235 NM_006539 HPRD:05910 CACNG3 - calcium channel, voltage-dependent, gamma subunit 3 protein-coding 13-PTNLD9-TUMOR_peak_44399 chr6 29521214 29521467 + 5.48391 NA Intergenic CpG 6362 NM_006398 10537 Hs.44532 NM_006398 HPRD:09354 UBD FAT10|GABBR1|UBD-3 ubiquitin D protein-coding 13-PTNLD9-TUMOR_peak_1801 chr1 53578235 53578347 + 5.48391 NA intron (NM_001287596, intron 3 of 3) LTR78|LTR|ERV1 30013 NM_001287596 6512 Hs.104637 NM_006671 HPRD:09194 SLC1A7 AAAT|EAAT5 solute carrier family 1 (glutamate transporter), member 7 protein-coding 13-PTNLD9-TUMOR_peak_42695 chr5 151064589 151064683 + 5.48391 NA intron (NR_109873, intron 3 of 4) intron (NR_109873, intron 3 of 4) 1979 NM_003118 6678 Hs.111779 NM_003118 HPRD:01631 SPARC ON secreted protein, acidic, cysteine-rich (osteonectin) protein-coding 13-PTNLD9-TUMOR_peak_32903 chr22 23064590 23064757 + 5.48391 NA Intergenic L1MEc|LINE|L1 75891 NM_199127 91227 Hs.450000 NM_080839 GGTLC2 GGTL4 gamma-glutamyltransferase light chain 2 protein-coding 13-PTNLD9-TUMOR_peak_26164 chr2 12678613 12678708 + 5.48391 NA intron (NR_110196, intron 4 of 5) intron (NR_110196, intron 4 of 5) -178338 NR_027303 28951 Hs.467751 NM_021643 HPRD:18224 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 13-PTNLD9-TUMOR_peak_13313 chr12 70828332 70828527 + 5.48391 NA TTS (NM_014505) TTS (NM_014505) 68367 NM_014505 27345 Hs.525529 NM_014505 HPRD:05564 KCNMB4 - potassium large conductance calcium-activated channel, subfamily M, beta member 4 protein-coding 13-PTNLD9-TUMOR_peak_4729 chr1 183994528 183994682 + 5.48391 NA intron (NM_015101, intron 1 of 11) intron (NM_015101, intron 1 of 11) 12258 NM_015101 23127 Hs.387995 NM_015101 HPRD:13583 COLGALT2 C1orf17|GLT25D2 collagen beta(1-O)galactosyltransferase 2 protein-coding 13-PTNLD9-TUMOR_peak_21813 chr17 63780090 63780184 + 5.48391 NA intron (NM_145036, intron 21 of 26) intron (NM_145036, intron 21 of 26) 42524 NM_001037325 201134 Hs.408676 NM_145036 HPRD:11336 CEP112 CCDC46|MACOCO centrosomal protein 112kDa protein-coding 13-PTNLD9-TUMOR_peak_36621 chr3 163079222 163079480 + 5.48391 NA Intergenic AluY|SINE|Alu -58262 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 13-PTNLD9-TUMOR_peak_56623 chrX 150921981 150922194 + 5.48391 NA Intergenic Intergenic 18869 NM_005140 1260 Hs.447360 NM_005140 HPRD:08946 CNGA2 CNCA|CNCA1|CNG2|OCNC1|OCNCALPHA|OCNCa cyclic nucleotide gated channel alpha 2 protein-coding 13-PTNLD9-TUMOR_peak_6395 chr10 6264390 6264582 + 5.48391 NA intron (NM_001282630, intron 10 of 14) L1MB5|LINE|L1 19646 NM_004566 5209 Hs.195471 NM_004566 HPRD:05612 PFKFB3 IPFK2|PFK2 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 protein-coding 13-PTNLD9-TUMOR_peak_28707 chr2 150851063 150851169 + 5.48391 NA Intergenic Intergenic -406786 NM_015702 27249 Hs.5324 NM_015702 HPRD:10781 MMADHC C2orf25|CL25022|cblD methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria protein-coding 13-PTNLD9-TUMOR_peak_13074 chr12 59197773 59197918 + 5.48391 NA Intergenic Intergenic -22347 NR_120452 101927653 Hs.130744 NR_120452 LOC101927653 - uncharacterized LOC101927653 ncRNA 13-PTNLD9-TUMOR_peak_11838 chr12 3083766 3083996 + 5.48391 NA intron (NM_201443, intron 1 of 10) intron (NM_201443, intron 1 of 10) 15133 NM_201443 7004 Hs.94865 NM_003213 HPRD:03421 TEAD4 EFTR-2|RTEF1|TCF13L1|TEF-3|TEF3|TEFR-1|hRTEF-1B TEA domain family member 4 protein-coding 13-PTNLD9-TUMOR_peak_13825 chr12 110750894 110751050 + 5.48391 NA intron (NM_170665, intron 5 of 19) intron (NM_170665, intron 5 of 19) 31940 NM_170665 488 Hs.506759 NM_001681 HPRD:00161 ATP2A2 ATP2B|DAR|DD|SERCA2 ATPase, Ca++ transporting, cardiac muscle, slow twitch 2 protein-coding 13-PTNLD9-TUMOR_peak_47037 chr7 22390557 22390654 + 5.48391 NA intron (NM_012294, intron 1 of 25) intron (NM_012294, intron 1 of 25) 5928 NM_012294 9771 Hs.174768 NM_012294 HPRD:15208 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor (GEF) 5 protein-coding 13-PTNLD9-TUMOR_peak_2993 chr1 116768822 116768916 + 5.48391 NA Intergenic Intergenic 114493 NM_152367 126868 Hs.376194 NM_152367 HPRD:08245 MAB21L3 C1orf161 mab-21-like 3 (C. elegans) protein-coding 13-PTNLD9-TUMOR_peak_25942 chr2 1595814 1595943 + 5.48391 NA Intergenic CpG 152441 NM_012293 7837 Hs.332197 NM_012293 ENSG00000130508 PXDN COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO peroxidasin homolog (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_33253 chr22 38574150 38574278 + 5.47539 NA intron (NM_001199562, intron 1 of 15) L2a|LINE|L2 3547 NM_001004426 8398 Hs.170479 NM_003560 HPRD:04675 PLA2G6 CaI-PLA2|GVI|INAD1|IPLA2-VIA|NBIA2|NBIA2A|NBIA2B|PARK14|PLA2|PNPLA9|iPLA2|iPLA2beta phospholipase A2, group VI (cytosolic, calcium-independent) protein-coding 13-PTNLD9-TUMOR_peak_10211 chr11 65186175 65186425 + 5.47322 NA Intergenic Intergenic -3969 NR_028272 283131 Hs.523789 NR_002802 NEAT1 LINC00084|NCRNA00084|TncRNA|VINC nuclear paraspeckle assembly transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_47901 chr7 73269906 73270078 + 5.47132 NA Intergenic CpG -5497 NM_182504 135886 Hs.647026 NM_182504 HPRD:15662 WBSCR28 - Williams-Beuren syndrome chromosome region 28 protein-coding 13-PTNLD9-TUMOR_peak_36897 chr3 181413168 181413313 + 5.47043 NA intron (NR_075090, intron 2 of 2) CpG -16472 NM_003106 6657 Hs.518438 NM_003106 HPRD:08921 SOX2 ANOP3|MCOPS3 SRY (sex determining region Y)-box 2 protein-coding 13-PTNLD9-TUMOR_peak_10958 chr11 94884343 94884437 + 5.47043 NA non-coding (NR_110303, exon 1 of 3) non-coding (NR_110303, exon 1 of 3) 687 NR_110303 101929295 Hs.735838 NR_110303 ENSG00000245552 LOC101929295 - uncharacterized LOC101929295 ncRNA 13-PTNLD9-TUMOR_peak_43397 chr6 1055705 1055799 + 5.47043 NA intron (NR_027115, intron 1 of 4) intron (NR_027115, intron 1 of 4) 45815 NR_027116 285768 Hs.209463 NR_027115 LOC285768 - uncharacterized LOC285768 ncRNA 13-PTNLD9-TUMOR_peak_1489 chr1 44068771 44068871 + 5.47043 NA intron (NM_002840, intron 14 of 33) intron (NM_002840, intron 14 of 33) -46976 NM_014663 9682 Hs.155983 NM_014663 HPRD:17168 KDM4A JHDM3A|JMJD2|JMJD2A|TDRD14A lysine (K)-specific demethylase 4A protein-coding 13-PTNLD9-TUMOR_peak_33707 chr3 9939682 9939794 + 5.47043 NA Intergenic Intergenic -4558 NM_153483 132014 Hs.390823 NM_144640 HPRD:17143 IL17RE - interleukin 17 receptor E protein-coding 13-PTNLD9-TUMOR_peak_36824 chr3 177314155 177314298 + 5.47043 NA intron (NR_047568, intron 2 of 3) intron (NR_047568, intron 2 of 3) 154517 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 13-PTNLD9-TUMOR_peak_54669 chr9 124320595 124320689 + 5.47043 NA Intergenic Intergenic -8739 NM_032552 153090 Hs.522378 NM_032552 HPRD:09903 DAB2IP AF9Q34|AIP-1|AIP1|DIP1/2 DAB2 interacting protein protein-coding 13-PTNLD9-TUMOR_peak_4629 chr1 181086892 181087070 + 5.46779 NA Intergenic Intergenic 29343 NM_016545 51278 Hs.15725 NM_016545 HPRD:06210 IER5 SBBI48 immediate early response 5 protein-coding 13-PTNLD9-TUMOR_peak_4440 chr1 173447312 173447476 + 5.46779 NA intron (NM_004905, intron 1 of 4) intron (NM_004905, intron 1 of 4) 908 NM_004905 9588 Hs.120 NM_004905 HPRD:03817 PRDX6 1-Cys|AOP2|HEL-S-128m|NSGPx|PRX|aiPLA2|p29 peroxiredoxin 6 protein-coding 13-PTNLD9-TUMOR_peak_40144 chr5 474098 474503 + 5.46533 NA intron (NR_125375, intron 1 of 6) intron (NR_125375, intron 1 of 6) 949 NR_125375 100288152 Hs.535801 NR_125375 LOC100288152 - uncharacterized LOC100288152 ncRNA 13-PTNLD9-TUMOR_peak_6620 chr10 20211328 20211449 + 5.46168 NA intron (NM_001282736, intron 1 of 12) intron (NM_001282736, intron 1 of 12) 106016 NM_032812 84898 Hs.99472 NM_032812 HPRD:08440 PLXDC2 TEM7R plexin domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_935 chr1 31635536 31635706 + 5.46168 NA Intergenic AluSq|SINE|Alu 77113 NM_024522 79570 Hs.470259 NM_024522 HPRD:07786 NKAIN1 FAM77C Na+/K+ transporting ATPase interacting 1 protein-coding 13-PTNLD9-TUMOR_peak_50585 chr8 33418954 33419072 + 5.46168 NA intron (NM_024787, intron 1 of 5) intron (NM_024787, intron 1 of 5) 5633 NM_024787 79845 Hs.151237 NM_024787 HPRD:11498 RNF122 - ring finger protein 122 protein-coding 13-PTNLD9-TUMOR_peak_9989 chr11 61022746 61023005 + 5.46168 NA Intergenic AluSg|SINE|Alu 14246 NM_014224 5222 Hs.432854 NM_014224 HPRD:01356 PGA5 - pepsinogen 5, group I (pepsinogen A) protein-coding 13-PTNLD9-TUMOR_peak_18639 chr16 16394216 16394330 + 5.45390 NA TTS (NR_036140).2 TTS (NR_036140).2 257 NR_036143 100422886 NR_036143 miRBase:MI0014216 MIR3179-2 - microRNA 3179-2 ncRNA 13-PTNLD9-TUMOR_peak_4128 chr1 161089554 161089649 + 5.45390 NA intron (NM_005600, intron 4 of 6) intron (NM_005600, intron 4 of 6) 1693 NM_001185094 4817 Hs.146406 NM_005600 HPRD:07056 NIT1 - nitrilase 1 protein-coding 13-PTNLD9-TUMOR_peak_44017 chr6 18432556 18432662 + 5.45390 NA intron (NM_182757, intron 3 of 7) intron (NM_182757, intron 3 of 7) 45028 NM_182757 255488 Hs.148741 NM_182757 HPRD:17126 RNF144B IBRDC2|PIR2|bA528A10.3|p53RFP ring finger protein 144B protein-coding 13-PTNLD9-TUMOR_peak_21741 chr17 61851374 61851468 + 5.45390 NA promoter-TSS (NM_203499) promoter-TSS (NM_203499) -128 NM_203499 11325 Hs.702010 NM_007372 HPRD:09909 DDX42 DDX42P|RHELP|RNAHP|SF3B8|SF3b125 DEAD (Asp-Glu-Ala-Asp) box helicase 42 protein-coding 13-PTNLD9-TUMOR_peak_45188 chr6 45919944 45920058 + 5.45263 NA intron (NM_001114086, intron 2 of 5) intron (NM_001114086, intron 2 of 5) -14667 NR_045673 53405 Hs.485489 NM_016929 HPRD:06292 CLIC5 MST130|MSTP130 chloride intracellular channel 5 protein-coding 13-PTNLD9-TUMOR_peak_37441 chr3 196519756 196519995 + 5.45263 NA intron (NM_002577, intron 2 of 14) HAL1|LINE|L1 53147 NM_002577 5062 Hs.518530 NM_002577 HPRD:05428 PAK2 PAK65|PAKgamma p21 protein (Cdc42/Rac)-activated kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_5004 chr1 202015503 202015640 + 5.45263 NA Intergenic Intergenic 35881 NM_001114309 1999 Hs.603657 NM_004433 HPRD:03722 ELF3 EPR-1|ERT|ESE-1|ESX E74-like factor 3 (ets domain transcription factor, epithelial-specific ) protein-coding 13-PTNLD9-TUMOR_peak_11680 chr11 130731957 130732111 + 5.45262 NA promoter-TSS (NR_125383) promoter-TSS (NR_125383) -29 NR_125383 100507431 Hs.375101 NR_125383 LOC100507431 - uncharacterized LOC100507431 ncRNA 13-PTNLD9-TUMOR_peak_29212 chr2 178628534 178628633 + 5.45262 NA intron (NM_001077197, intron 11 of 20) MER91A|DNA|hAT-Tip100 124883 NM_001077196 50940 Hs.570273 NM_016953 HPRD:05391 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 13-PTNLD9-TUMOR_peak_13354 chr12 73033759 73033858 + 5.45262 NA intron (NM_013381, intron 15 of 18) L1PA3|LINE|L1 -366519 NR_026836 283392 Hs.363603 NM_001025457 HPRD:18764 TRHDE-AS1 - TRHDE antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_8985 chr11 8854550 8854675 + 5.45262 NA intron (NM_005418, intron 3 of 22) intron (NM_005418, intron 3 of 22) -21730 NM_139157 6764 Hs.117715 NM_005418 HPRD:00780 ST5 DENND2B|HTS1|p126 suppression of tumorigenicity 5 protein-coding 13-PTNLD9-TUMOR_peak_53191 chr9 37683436 37683948 + 5.45262 NA intron (NM_014907, intron 1 of 15) L2c|LINE|L2 32640 NM_014907 22844 Hs.163990 NM_014907 HPRD:17018 FRMPD1 FRMD2 FERM and PDZ domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_28329 chr2 122961275 122961403 + 5.45262 NA Intergenic Intergenic 448218 NR_048557 7247 Hs.75066 NM_004622 HPRD:08993 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 13-PTNLD9-TUMOR_peak_55685 chrX 30671261 30671378 + 5.45262 NA promoter-TSS (NM_203391) promoter-TSS (NM_203391) -157 NM_203391 2710 Hs.1466 NM_000167 HPRD:08363 GK GK1|GKD glycerol kinase protein-coding 13-PTNLD9-TUMOR_peak_23284 chr18 55875547 55875843 + 5.45262 NA intron (NM_001144970, intron 1 of 28) MamRep434|DNA|TcMar-Tigger -13059 NM_001144966 23327 Hs.185677 NM_015277 HPRD:05903 NEDD4L NEDD4-2|NEDD4.2|RSP5|hNEDD4-2 neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_52657 chr9 4236087 4236318 + 5.45262 NA intron (NM_001042413, intron 2 of 10) (A)n|Simple_repeat|Simple_repeat 63833 NM_001042413 169792 Hs.162125 NM_152629 HPRD:13582 GLIS3 ZNF515 GLIS family zinc finger 3 protein-coding 13-PTNLD9-TUMOR_peak_36082 chr3 137844575 137844769 + 5.45262 NA intron (NM_016161, intron 2 of 2) L2a|LINE|L2 6557 NM_016161 51146 Hs.278960 NM_016161 HPRD:12390 A4GNT alpha4GnT alpha-1,4-N-acetylglucosaminyltransferase protein-coding 13-PTNLD9-TUMOR_peak_49650 chr7 150896498 150896592 + 5.45262 NA Intergenic Intergenic -11626 NM_080871 136371 Hs.647081 NM_080871 ENSG00000146926 ASB10 GLC1F ankyrin repeat and SOCS box containing 10 protein-coding 13-PTNLD9-TUMOR_peak_49752 chr7 153446532 153446887 + 5.45029 NA Intergenic CpG -137473 NM_001039350 1804 Hs.490684 NM_001936 HPRD:00525 DPP6 DPPX|VF2 dipeptidyl-peptidase 6 protein-coding 13-PTNLD9-TUMOR_peak_33999 chr3 17782270 17782396 + 5.44890 NA promoter-TSS (NM_014744) promoter-TSS (NM_014744) 66 NM_014744 9779 Hs.475629 NM_014744 HPRD:10262 TBC1D5 - TBC1 domain family, member 5 protein-coding 13-PTNLD9-TUMOR_peak_11430 chr11 120417355 120417549 + 5.44884 NA intron (NM_014619, intron 1 of 20) intron (NM_014619, intron 1 of 20) -17693 NM_001282470 2900 Hs.538738 NM_014619 HPRD:02613 GRIK4 EAA1|GRIK|GluK4|KA1 glutamate receptor, ionotropic, kainate 4 protein-coding 13-PTNLD9-TUMOR_peak_45548 chr6 79338960 79339382 + 5.44884 NA Intergenic L1PREC2|LINE|L1 -238090 NM_001010844 134728 Hs.656212 NM_001010844 HPRD:17157 IRAK1BP1 AIP70|SIMPL interleukin-1 receptor-associated kinase 1 binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_52935 chr9 24230132 24230302 + 5.44884 NA Intergenic L1PA3|LINE|L1 315457 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 13-PTNLD9-TUMOR_peak_37787 chr4 6711244 6711597 + 5.44884 NA 5' UTR (NM_203462, exon 1 of 2) 5' UTR (NM_203462, exon 1 of 2) 186 NM_203462 114932 Hs.593159 NM_152301 HPRD:15162 MRFAP1L1 - Morf4 family associated protein 1-like 1 protein-coding 13-PTNLD9-TUMOR_peak_40465 chr5 18472367 18472541 + 5.44884 NA Intergenic L1PA3|LINE|L1 -1085035 NR_033975 401177 Hs.508311 NR_033975 ENSG00000250822 LOC401177 - uncharacterized LOC401177 ncRNA 13-PTNLD9-TUMOR_peak_7387 chr10 53157520 53157616 + 5.44884 NA intron (NM_006258, intron 2 of 17) intron (NM_006258, intron 2 of 17) 98235 NR_030336 693190 NR_030336 MIR605 MIRN605|hsa-mir-605 microRNA 605 ncRNA 13-PTNLD9-TUMOR_peak_23074 chr18 44676523 44676659 + 5.44884 NA intron (NM_032124, intron 1 of 6) CpG 280 NM_032124 84064 Hs.465041 NM_032124 HPRD:13640 HDHD2 3110052N05Rik|HEL-S-301 haloacid dehalogenase-like hydrolase domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_28322 chr2 122701833 122701981 + 5.44884 NA Intergenic Zaphod|DNA|hAT-Tip100 188786 NR_048557 7247 Hs.75066 NM_004622 HPRD:08993 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 13-PTNLD9-TUMOR_peak_26013 chr2 8577789 8577964 + 5.44884 NA Intergenic HERV16-int|LTR|ERVL -109327 NR_034135 339789 Hs.565619 NM_207358 HPRD:14171 LINC00299 C2orf46|NCRNA00299 long intergenic non-protein coding RNA 299 ncRNA 13-PTNLD9-TUMOR_peak_55548 chrX 13506309 13506456 + 5.44884 NA Intergenic Intergenic -81312 NM_001167890 25975 Hs.12844 NM_015507 HPRD:02212 EGFL6 MAEG|W80 EGF-like-domain, multiple 6 protein-coding 13-PTNLD9-TUMOR_peak_17232 chr15 46021483 46021590 + 5.44884 NA Intergenic Intergenic 94598 NM_021199 58472 Hs.511251 NM_021199 HPRD:18102 SQRDL PRO1975 sulfide quinone reductase-like (yeast) protein-coding 13-PTNLD9-TUMOR_peak_52757 chr9 13492110 13492204 + 5.44884 NA Intergenic Intergenic -60829 NR_033863 401492 Hs.632651 NR_033863 ENSG00000270547 LINC01235 - long intergenic non-protein coding RNA 1235 ncRNA 13-PTNLD9-TUMOR_peak_47112 chr7 26688461 26688555 + 5.44884 NA Intergenic Intergenic 11018 NM_001145531 285941 Hs.413394 NM_001145531 ENSG00000222004 C7orf71 - chromosome 7 open reading frame 71 protein-coding 13-PTNLD9-TUMOR_peak_34301 chr3 39548003 39548132 + 5.44884 NA intron (NR_103505, intron 4 of 6) LTR16C|LTR|ERVL 4510 NM_001278323 4336 Hs.121333 NM_182935 HPRD:02973 MOBP - myelin-associated oligodendrocyte basic protein protein-coding 13-PTNLD9-TUMOR_peak_27785 chr2 99061254 99061455 + 5.44884 NA promoter-TSS (NM_001566) promoter-TSS (NM_001566) 33 NM_001134224 3631 Hs.469386 NM_001566 HPRD:02949 INPP4A INPP4|TVAS1 inositol polyphosphate-4-phosphatase, type I, 107kDa protein-coding 13-PTNLD9-TUMOR_peak_42370 chr5 140893515 140893671 + 5.44884 NA TTS (NM_001079812) TTS (NM_001079812) 24785 NM_018929 56097 Hs.368160 NM_018929 HPRD:07318 PCDHGC5 PCDH-GAMMA-C5 protocadherin gamma subfamily C, 5 protein-coding 13-PTNLD9-TUMOR_peak_32423 chr21 43719943 43720248 + 5.44884 NA Intergenic MIRb|SINE|MIR 15611 NM_003226 7033 Hs.82961 NM_003226 HPRD:02797 TFF3 ITF|P1B|TFI trefoil factor 3 (intestinal) protein-coding 13-PTNLD9-TUMOR_peak_39462 chr4 141264517 141264611 + 5.44884 NA promoter-TSS (NM_001153446) promoter-TSS (NM_001153446) -33 NM_001153446 60592 Hs.480815 NM_032547 HPRD:18027 SCOC SCOCO short coiled-coil protein protein-coding 13-PTNLD9-TUMOR_peak_52312 chr8 141466766 141466930 + 5.44884 NA intron (NM_031466, intron 1 of 22) intron (NM_031466, intron 1 of 22) 1013 NM_001160372 83696 Hs.654911 NM_031466 HPRD:18136 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|TRS120 trafficking protein particle complex 9 protein-coding 13-PTNLD9-TUMOR_peak_52989 chr9 31908389 31908554 + 5.44884 NA Intergenic LTR3B|LTR|ERVK -476130 NM_002197 48 Hs.567229 NM_002197 HPRD:00013 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1, soluble protein-coding 13-PTNLD9-TUMOR_peak_21914 chr17 71287750 71287846 + 5.44630 NA intron (NM_012121, intron 1 of 1) intron (NM_012121, intron 1 of 1) 20345 NM_012121 23580 Hs.3903 NM_012121 HPRD:08383 CDC42EP4 BORG4|CEP4|KAIA1777 CDC42 effector protein (Rho GTPase binding) 4 protein-coding 13-PTNLD9-TUMOR_peak_5902 chr1 234644027 234644218 + 5.44630 NA Intergenic L3|LINE|CR1 23403 NR_038426 100506795 Hs.448989 NR_038426 ENSG00000231768 LINC01354 - long intergenic non-protein coding RNA 1354 ncRNA 13-PTNLD9-TUMOR_peak_55426 chrUn_gl000228 43328 43453 + 5.44630 NA Intergenic CpG -11164 NM_001286820 448831 Hs.626907 NM_001005217 HPRD:16418 FRG2 FRG2A FSHD region gene 2 protein-coding 13-PTNLD9-TUMOR_peak_14237 chr12 125237009 125237198 + 5.44630 NA Intergenic Intergenic 111416 NM_005505 949 Hs.731377 NM_005505 HPRD:03024 SCARB1 CD36L1|CLA-1|CLA1|HDLQTL6|SR-BI|SRB1 scavenger receptor class B, member 1 protein-coding 13-PTNLD9-TUMOR_peak_42792 chr5 157286078 157286267 + 5.44630 NA promoter-TSS (NM_001195556) promoter-TSS (NM_001195556) 11 NM_014666 9685 Hs.644000 NM_014666 HPRD:06273 CLINT1 CLINT|ENTH|EPN4|EPNR clathrin interactor 1 protein-coding 13-PTNLD9-TUMOR_peak_37380 chr3 195414216 195414413 + 5.43623 NA intron (NR_003265, intron 14 of 14) intron (NR_003265, intron 14 of 14) -1055 NR_122105 440993 Hs.708999 NM_001013714 LINC00969 - long intergenic non-protein coding RNA 969 ncRNA 13-PTNLD9-TUMOR_peak_20377 chr17 7123840 7124056 + 5.43456 NA promoter-TSS (NM_001365) promoter-TSS (NM_001365) -579 NM_001365 1742 Hs.463928 NM_001365 HPRD:04199 DLG4 PSD95|SAP-90|SAP90 discs, large homolog 4 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_56630 chrX 151139297 151139401 + 5.43456 NA intron (NM_004961, intron 1 of 8) intron (NM_004961, intron 1 of 8) 3802 NM_004961 2564 Hs.22785 NM_004961 HPRD:02104 GABRE - gamma-aminobutyric acid (GABA) A receptor, epsilon protein-coding 13-PTNLD9-TUMOR_peak_4133 chr1 161147003 161147120 + 5.43456 NA intron (NM_003779, intron 1 of 7) CpG 697 NM_001199874 8703 Hs.321231 NM_003779 HPRD:04929 B4GALT3 beta4Gal-T3 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 3 protein-coding 13-PTNLD9-TUMOR_peak_18824 chr16 24860402 24860506 + 5.43414 NA intron (NM_001258413, intron 2 of 15) intron (NM_001258413, intron 2 of 15) 2902 NM_052944 115584 Hs.164118 NM_052944 ENSG00000158865 SLC5A11 KST1|RKST1|SGLT6|SMIT2 solute carrier family 5 (sodium/inositol cotransporter), member 11 protein-coding 13-PTNLD9-TUMOR_peak_50307 chr8 22602361 22602547 + 5.43414 NA intron (NM_144962, intron 4 of 6) MIRc|SINE|MIR -51639 NM_004430 1960 Hs.534313 NM_004430 HPRD:03881 EGR3 EGR-3|PILOT early growth response 3 protein-coding 13-PTNLD9-TUMOR_peak_3119 chr1 120904678 120904772 + 5.43414 NA Intergenic CpG -1309 NR_027337 337875 Hs.742189 NR_027337 HIST2H2BA - histone cluster 2, H2ba (pseudogene) pseudo 13-PTNLD9-TUMOR_peak_18656 chr16 18505512 18505635 + 5.43414 NA TTS (NR_036140).3 TTS (NR_036140).3 261 NR_036143 100422886 NR_036143 miRBase:MI0014216 MIR3179-2 - microRNA 3179-2 ncRNA 13-PTNLD9-TUMOR_peak_36217 chr3 141658730 141658885 + 5.43414 NA Intergenic AluJr|SINE|Alu 60422 NM_001178140 7029 Hs.379018 NM_006286 HPRD:03696 TFDP2 DP2 transcription factor Dp-2 (E2F dimerization partner 2) protein-coding 13-PTNLD9-TUMOR_peak_7530 chr10 65390602 65390735 + 5.43414 NA Intergenic CpG 109545 NM_001001330 221035 Hs.499833 NM_001001330 HPRD:16582 REEP3 C10orf74 receptor accessory protein 3 protein-coding 13-PTNLD9-TUMOR_peak_32114 chr21 32726564 32726673 + 5.43092 NA intron (NM_003253, intron 2 of 28) intron (NM_003253, intron 2 of 28) 204672 NM_003253 7074 Hs.517228 NM_003253 HPRD:02820 TIAM1 - T-cell lymphoma invasion and metastasis 1 protein-coding 13-PTNLD9-TUMOR_peak_3943 chr1 156472745 156472883 + 5.43082 NA Intergenic Intergenic -2180 NM_005920 4209 Hs.314327 NM_005920 HPRD:02810 MEF2D - myocyte enhancer factor 2D protein-coding 13-PTNLD9-TUMOR_peak_3103 chr1 120684648 120684754 + 5.43031 NA Intergenic Intergenic -72384 NM_024408 4853 Hs.487360 NM_024408 HPRD:02606 NOTCH2 AGS2|HJCYS|hN2 notch 2 protein-coding 13-PTNLD9-TUMOR_peak_55967 chrX 61689886 61690086 + 5.42252 NA Intergenic ALR/Alpha|Satellite|centr 881232 NM_001012968 139886 Hs.612782 NM_001012968 HPRD:12556 SPIN4 - spindlin family, member 4 protein-coding 13-PTNLD9-TUMOR_peak_15006 chr13 99964898 99965036 + 5.42192 NA intron (NR_026644, intron 4 of 8) intron (NR_026644, intron 4 of 8) -5218 NM_004951 1880 Hs.784 NM_004951 HPRD:12040 GPR183 EBI2 G protein-coupled receptor 183 protein-coding 13-PTNLD9-TUMOR_peak_7675 chr10 73078932 73079042 + 5.42192 NA promoter-TSS (NM_018344) promoter-TSS (NM_018344) -23 NR_033414 55315 Hs.438419 NM_018344 HPRD:11570 SLC29A3 ENT3|HCLAP|HJCD|PHID solute carrier family 29 (equilibrative nucleoside transporter), member 3 protein-coding 13-PTNLD9-TUMOR_peak_40859 chr5 53776193 53776372 + 5.42192 NA Intergenic Intergenic 24851 NM_006308 8988 Hs.41707 NM_006308 HPRD:06861 HSPB3 DHMN2C|HMN2C|HSPL27 heat shock 27kDa protein 3 protein-coding 13-PTNLD9-TUMOR_peak_22739 chr18 19992941 19993069 + 5.42192 NA TTS (NM_172241) TTS (NM_172241) 4873 NM_172241 64693 Hs.406709 NM_022663 HPRD:16395 CTAGE1 CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2 cutaneous T-cell lymphoma-associated antigen 1 protein-coding 13-PTNLD9-TUMOR_peak_34048 chr3 22842894 22842998 + 5.42192 NA Intergenic L1PA2|LINE|L1 -401838 NM_152653 7325 Hs.475688 NM_152653 UBE2E2 UBCH8 ubiquitin-conjugating enzyme E2E 2 protein-coding 13-PTNLD9-TUMOR_peak_42032 chr5 131762377 131762557 + 5.42192 NA intron (NR_045116, intron 2 of 3) intron (NR_045116, intron 2 of 3) 16002 NR_045116 441108 Hs.658288 NM_001013717 HPRD:18460 C5orf56 - chromosome 5 open reading frame 56 ncRNA 13-PTNLD9-TUMOR_peak_50907 chr8 49833952 49834089 + 5.42192 NA promoter-TSS (NM_003068) promoter-TSS (NM_003068) -21 NM_003068 6591 Hs.360174 NM_003068 HPRD:03689 SNAI2 SLUG|SLUGH1|SNAIL2|WS2D snail family zinc finger 2 protein-coding 13-PTNLD9-TUMOR_peak_30813 chr20 32384426 32384575 + 5.42192 NA intron (NR_110623, intron 2 of 3) intron (NR_110623, intron 2 of 3) 14405 NR_110623 101929746 Hs.504633 NR_110623 ENSG00000230753 ZNF341-AS1 - ZNF341 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_26331 chr2 25433173 25433360 + 5.42192 NA Intergenic LTR13A|LTR|ERVK -41707 NM_001035256 5443 Hs.1897 NM_000939 HPRD:01462 POMC ACTH|CLIP|LPH|MSH|NPP|POC proopiomelanocortin protein-coding 13-PTNLD9-TUMOR_peak_53911 chr9 91199071 91199253 + 5.42192 NA Intergenic Intergenic 49146 NM_001161625 158046 Hs.734507 NM_145283 HPRD:12938 NXNL2 C9orf121|RDCVF2 nucleoredoxin-like 2 protein-coding 13-PTNLD9-TUMOR_peak_14440 chr13 24789909 24790149 + 5.42192 NA intron (NM_153023, intron 1 of 11) intron (NM_153023, intron 1 of 11) 38548 NR_046531 100874231 Hs.577998 NR_046531 ENSG00000227213 SPATA13-AS1 - SPATA13 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_41957 chr5 127211448 127211552 + 5.42192 NA Intergenic Intergenic 207266 NR_015360 644873 Hs.340623 NR_015360 ENSG00000245937 LINC01184 - long intergenic non-protein coding RNA 1184 ncRNA 13-PTNLD9-TUMOR_peak_44055 chr6 20181338 20181434 + 5.42192 NA intron (NM_001080480, intron 1 of 12) intron (NM_001080480, intron 1 of 12) 31309 NR_073465 154141 Hs.377830 NM_001080480 MBOAT1 1|LPEAT1|LPLAT|LPLAT 1|LPSAT|OACT1|dJ434O11.1 membrane bound O-acyltransferase domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_7500 chr10 63853776 63853969 + 5.42192 NA 3' UTR (NM_032199, exon 10 of 10) 3' UTR (NM_032199, exon 10 of 10) 44902 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT rich interactive domain 5B (MRF1-like) protein-coding 13-PTNLD9-TUMOR_peak_7986 chr10 91110921 91111027 + 5.42192 NA Intergenic AluJb|SINE|Alu 18738 NM_001031683 3437 Hs.47338 NM_001549 HPRD:05228 IFIT3 CIG-49|GARG-49|IFI60|IFIT4|IRG2|ISG60|P60|RIG-G interferon-induced protein with tetratricopeptide repeats 3 protein-coding 13-PTNLD9-TUMOR_peak_29582 chr2 203672630 203672749 + 5.42192 NA intron (NM_001288622, intron 9 of 12) L1M1|LINE|L1 21268 NM_001288624 130026 Hs.516629 NM_138468 HPRD:12446 ICA1L ALS2CR14|ALS2CR15 islet cell autoantigen 1,69kDa-like protein-coding 13-PTNLD9-TUMOR_peak_6190 chr1 247496514 247496702 + 5.42192 NA Intergenic Intergenic -1563 NM_032752 84838 Hs.654803 NM_032752 HPRD:15805 ZNF496 NIZP1|ZFP496|ZKSCAN17|ZSCAN49 zinc finger protein 496 protein-coding 13-PTNLD9-TUMOR_peak_56883 chrY 13627455 13627556 + 5.42192 NA Intergenic HERVL-int|LTR|ERVL 905884 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_18724 chr16 21375214 21375386 + 5.42166 NA intron (NR_045011, intron 2 of 5) intron (NR_045011, intron 2 of 5) 14616 NR_045011 100652781 Hs.443656 NM_001012391 SNX29P1 RUNDC2B|RUNDC2L sorting nexin 29 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_48169 chr7 82137533 82137714 + 5.42166 NA Intergenic MER52D|LTR|ERV1 -64592 NM_000722 781 Hs.282151 NM_000722 HPRD:00245 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium channel, voltage-dependent, alpha 2/delta subunit 1 protein-coding 13-PTNLD9-TUMOR_peak_7628 chr10 71953130 71953306 + 5.42166 NA Intergenic MLT1I|LTR|ERVL-MaLR -22933 NM_001142648 56681 Hs.499960 NM_020150 HPRD:07608 SAR1A SAR1|SARA1|Sara|masra2 secretion associated, Ras related GTPase 1A protein-coding 13-PTNLD9-TUMOR_peak_40181 chr5 1174546 1174658 + 5.42166 NA intron (NR_109911, intron 4 of 4) intron (NR_109911, intron 4 of 4) 4118 NR_109911 101928857 Hs.593732 NR_109911 ENSG00000249201 CTD-3080P12.3 - uncharacterized LOC101928857 ncRNA 13-PTNLD9-TUMOR_peak_56934 chrY 13815514 13815639 + 5.42085 NA Intergenic (GAATG)n|Satellite|Satellite 717813 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_56760 chrX 154687382 154687564 + 5.41908 NA TTS (NR_036049) TTS (NR_036049) 295 NR_036260 100422977 NR_036260 miRBase:MI0015972 MIR1184-3 - microRNA 1184-3 ncRNA 13-PTNLD9-TUMOR_peak_56759 chrX 154612462 154612644 + 5.41908 NA TTS (NR_036049).3 TTS (NR_036049).3 294 NR_036049 100302111 NR_036049 MIR1184-1 MIR1184|MIRN1184|hsa-mir-1184|hsa-mir-1184-1 microRNA 1184-1 ncRNA 13-PTNLD9-TUMOR_peak_48029 chr7 75849575 75849822 + 5.41365 NA intron (NM_001291831, intron 1 of 15) L2b|LINE|L2 18487 NM_001291831 222183 Hs.511025 NM_001039212 HPRD:08219 SRRM3 - serine/arginine repetitive matrix 3 protein-coding 13-PTNLD9-TUMOR_peak_28108 chr2 113413591 113413688 + 5.41365 NA intron (NM_005415, intron 5 of 10) intron (NM_005415, intron 5 of 10) 10205 NM_005415 6574 Hs.187946 NM_005415 HPRD:08846 SLC20A1 GLVR1|Glvr-1|PIT1|PiT-1 solute carrier family 20 (phosphate transporter), member 1 protein-coding 13-PTNLD9-TUMOR_peak_28510 chr2 133174547 133174674 + 5.41365 NA 5' UTR (NM_001508, exon 1 of 2) 5' UTR (NM_001508, exon 1 of 2) 463 NM_001508 2863 Hs.432395 NM_001508 HPRD:04198 GPR39 - G protein-coupled receptor 39 protein-coding 13-PTNLD9-TUMOR_peak_11267 chr11 113755159 113755253 + 5.41365 NA Intergenic AluSx1|SINE|Alu -8914 NM_020886 57646 Hs.503891 NM_020886 HPRD:15632 USP28 - ubiquitin specific peptidase 28 protein-coding 13-PTNLD9-TUMOR_peak_29531 chr2 201766318 201766447 + 5.41365 NA intron (NM_021824, intron 6 of 6) intron (NM_021824, intron 6 of 6) 9741 NM_001142356 60491 Hs.145284 NM_021824 HPRD:10424 NIF3L1 ALS2CR1|CALS-7 NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_41959 chr5 127259538 127259730 + 5.41365 NA Intergenic Intergenic 159132 NR_015360 644873 Hs.340623 NR_015360 ENSG00000245937 LINC01184 - long intergenic non-protein coding RNA 1184 ncRNA 13-PTNLD9-TUMOR_peak_46746 chr7 3794752 3794923 + 5.41365 NA intron (NM_152744, intron 4 of 44) MER89|LTR|ERV1 -374480 NM_001079653 221935 Hs.653013 NM_152744 HPRD:07388 SDK1 - sidekick cell adhesion molecule 1 protein-coding 13-PTNLD9-TUMOR_peak_11945 chr12 6219328 6219467 + 5.41365 NA intron (NM_000552, intron 5 of 51) intron (NM_000552, intron 5 of 51) 14439 NM_000552 7450 Hs.440848 NM_000552 HPRD:01906 VWF F8VWF|VWD von Willebrand factor protein-coding 13-PTNLD9-TUMOR_peak_17904 chr15 86295901 86296000 + 5.41365 NA Intergenic Intergenic 6006 NR_120366 101929679 Hs.513112 NR_120366 ENSG00000259416 LOC101929679 - uncharacterized LOC101929679 ncRNA 13-PTNLD9-TUMOR_peak_40269 chr5 9343278 9343494 + 5.41365 NA intron (NM_003966, intron 3 of 22) intron (NM_003966, intron 3 of 22) -168059 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 CTD-2201E9.1 - uncharacterized LOC101929338 ncRNA 13-PTNLD9-TUMOR_peak_54553 chr9 117716339 117716509 + 5.41365 NA Intergenic Intergenic -23549 NM_001252290 944 Hs.494901 NM_001244 TNFSF8 CD153|CD30L|CD30LG tumor necrosis factor (ligand) superfamily, member 8 protein-coding 13-PTNLD9-TUMOR_peak_27064 chr2 64539513 64539772 + 5.41365 NA Intergenic Intergenic 84107 NR_120420 100507006 Hs.442789 NR_120420 LOC100507006 - uncharacterized LOC100507006 ncRNA 13-PTNLD9-TUMOR_peak_14773 chr13 51483826 51484013 + 5.41365 NA 5' UTR (NM_001142279, exon 1 of 10) 5' UTR (NM_001142279, exon 1 of 10) 105 NM_001142279 79621 Hs.306291 NM_024570 ENSG00000136104 RNASEH2B AGS2|DLEU8 ribonuclease H2, subunit B protein-coding 13-PTNLD9-TUMOR_peak_44397 chr6 29382437 29382584 + 5.41365 NA Intergenic Intergenic 12999 NM_013937 26531 Hs.676010 NM_013937 HPRD:14899 OR11A1 6M1-18|OR11A2|dJ994E9.6|hs6M1-18 olfactory receptor, family 11, subfamily A, member 1 protein-coding 13-PTNLD9-TUMOR_peak_35938 chr3 131899222 131899318 + 5.41365 NA Intergenic MER91B|DNA|hAT-Tip100 -136941 NM_001099 55 Hs.433060 NM_001099 HPRD:01378 ACPP 5'-NT|ACP-3|ACP3 acid phosphatase, prostate protein-coding 13-PTNLD9-TUMOR_peak_27388 chr2 84654453 84654646 + 5.41365 NA intron (NM_003849, intron 7 of 8) Charlie1a|DNA|hAT-Charlie 32037 NM_003849 8802 Hs.270428 NM_003849 HPRD:18128 SUCLG1 GALPHA|MTDPS9|SUCLA1 succinate-CoA ligase, alpha subunit protein-coding 13-PTNLD9-TUMOR_peak_22770 chr18 20831292 20831443 + 5.41365 NA intron (NM_001100619, intron 7 of 9) AluSx|SINE|Alu 95578 NM_138375 91768 Hs.11108 NM_138375 HPRD:16461 CABLES1 CABL1|CABLES|HsT2563|IK3-1 Cdk5 and Abl enzyme substrate 1 protein-coding 13-PTNLD9-TUMOR_peak_1802 chr1 53588251 53588514 + 5.41365 NA intron (NR_109858, intron 2 of 10) L3|LINE|CR1 19922 NM_001287596 6512 Hs.104637 NM_006671 HPRD:09194 SLC1A7 AAAT|EAAT5 solute carrier family 1 (glutamate transporter), member 7 protein-coding 13-PTNLD9-TUMOR_peak_36234 chr3 142366769 142366943 + 5.41365 NA intron (NM_002670, intron 1 of 15) L2b|LINE|L2 -8883 NM_001172312 5357 Hs.203637 NM_002670 HPRD:04110 PLS1 - plastin 1 protein-coding 13-PTNLD9-TUMOR_peak_29155 chr2 175700613 175700738 + 5.41365 NA intron (NM_001025201, intron 7 of 12) L1MEc|LINE|L1 11671 NM_001206602 1123 Hs.380138 NM_001822 HPRD:00319 CHN1 ARHGAP2|CHN|DURS2|NC|RHOGAP2 chimerin 1 protein-coding 13-PTNLD9-TUMOR_peak_21465 chr17 48535805 48535899 + 5.41365 NA intron (NM_001288968, intron 2 of 16) L2c|LINE|L2 -9838 NR_110232 80221 Hs.288959 NM_025149 HPRD:13380 ACSF2 ACSMW|AVYV493 acyl-CoA synthetase family member 2 protein-coding 13-PTNLD9-TUMOR_peak_12206 chr12 13359441 13359579 + 5.41365 NA intron (NM_001423, intron 1 of 4) intron (NM_001423, intron 1 of 4) 9908 NM_001423 2012 Hs.719042 NM_001423 HPRD:11892 EMP1 CL-20|EMP-1|TMP epithelial membrane protein 1 protein-coding 13-PTNLD9-TUMOR_peak_9566 chr11 36579032 36579126 + 5.41365 NA Intergenic L1HS|LINE|L1 -10484 NM_000448 5896 Hs.73958 NM_000448 HPRD:01556 RAG1 RAG-1|RNF74 recombination activating gene 1 protein-coding 13-PTNLD9-TUMOR_peak_31090 chr20 40330335 40330429 + 5.41365 NA Intergenic Intergenic -83249 NM_032221 84181 Hs.740645 NM_032221 HPRD:13049 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 13-PTNLD9-TUMOR_peak_55786 chrX 47046669 47046882 + 5.41365 NA TTS (NM_001204467) TTS (NM_001204467) -3424 NM_153280 7317 Hs.533273 NM_003334 HPRD:02440 UBA1 A1S9|A1S9T|A1ST|AMCX1|CFAP124|GXP1|POC20|SMAX2|UBA1A|UBE1|UBE1X ubiquitin-like modifier activating enzyme 1 protein-coding 13-PTNLD9-TUMOR_peak_6733 chr10 25787624 25787754 + 5.41365 NA intron (NM_020752, intron 5 of 10) intron (NM_020752, intron 5 of 10) -152952 NR_108068 101929052 Hs.128298 NR_108067 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 13-PTNLD9-TUMOR_peak_50137 chr8 16313970 16314140 + 5.41365 NA Intergenic AluSx3|SINE|Alu -263755 NM_138715 4481 Hs.147635 NM_002445 HPRD:01092 MSR1 CD204|SCARA1|SR-A|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_17601 chr15 72476575 72476821 + 5.41365 NA intron (NM_001012642, intron 1 of 11) CpG 13438 NM_001012642 196996 Hs.596332 NM_001012642 HPRD:13161 GRAMD2 - GRAM domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_48785 chr7 107302150 107302255 + 5.41365 NA promoter-TSS (NR_028137) promoter-TSS (NR_028137) 41 NR_028137 286002 Hs.512611 NR_028137 ENSG00000233705 SLC26A4-AS1 - SLC26A4 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_47090 chr7 25018918 25019283 + 5.41181 NA intron (NM_015550, intron 1 of 22) CpG 731 NM_015550 26031 Hs.520259 NM_015550 HPRD:09474 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein-like 3 protein-coding 13-PTNLD9-TUMOR_peak_33442 chr22 46402374 46402468 + 5.40901 NA promoter-TSS (NR_027240) promoter-TSS (NR_027240) -75 NR_027240 730668 Hs.640071 NR_027240 LOC730668 - dynein heavy chain -like pseudogene pseudo 13-PTNLD9-TUMOR_peak_33919 chr3 15143942 15144075 + 5.40901 NA Intergenic Intergenic -3353 NM_022340 64145 Hs.475565 NM_022340 HPRD:15732 ZFYVE20 Rabenosyn-5 zinc finger, FYVE domain containing 20 protein-coding 13-PTNLD9-TUMOR_peak_23777 chr19 6373465 6373570 + 5.40901 NA intron (NM_032306, intron 1 of 3) CpG 1073 NM_032306 84266 Hs.111099 NM_032306 HPRD:15425 ALKBH7 ABH7|SPATA11|UNQ6002 alkB, alkylation repair homolog 7 (E. coli) protein-coding 13-PTNLD9-TUMOR_peak_31573 chr20 52391347 52391441 + 5.40901 NA Intergenic L3|LINE|CR1 100854 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_34339 chr3 42162656 42162795 + 5.40795 NA intron (NM_001265608, intron 1 of 13) intron (NM_001265608, intron 1 of 13) -28002 NM_001265610 22906 Hs.535711 NM_014965 HPRD:09732 TRAK1 MILT1|OIP106 trafficking protein, kinesin binding 1 protein-coding 13-PTNLD9-TUMOR_peak_16838 chr15 26332695 26332828 + 5.40795 NA Intergenic Intergenic -28199 NR_038851 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 13-PTNLD9-TUMOR_peak_30338 chr20 4045264 4045451 + 5.40795 NA Intergenic Intergenic -49141 NM_001134338 11237 Hs.589884 NM_007219 HPRD:10198 RNF24 G1L ring finger protein 24 protein-coding 13-PTNLD9-TUMOR_peak_15682 chr14 50065846 50066008 + 5.40795 NA intron (NM_203467, intron 1 of 2) CpG 512 NR_037792 122769 Hs.451090 NM_152329 HPRD:15164 LRR1 4-1BBLRR|LRR-1|PPIL5 leucine rich repeat protein 1 protein-coding 13-PTNLD9-TUMOR_peak_4577 chr1 179334790 179334910 + 5.40795 NA promoter-TSS (NM_144696) promoter-TSS (NM_144696) -5 NM_144696 126859 Hs.658505 NM_144696 HPRD:08740 AXDND1 C1orf125 axonemal dynein light chain domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_44335 chr6 27835302 27835415 + 5.40180 NA promoter-TSS (NM_005322) promoter-TSS (NM_005322) 1 NM_005322 3009 Hs.131956 NM_005322 HPRD:00821 HIST1H1B H1|H1.5|H1B|H1F5|H1s-3 histone cluster 1, H1b protein-coding 13-PTNLD9-TUMOR_peak_47869 chr7 72972254 72972365 + 5.40180 NA promoter-TSS (NM_001707) promoter-TSS (NM_001707) -244 NM_001301061 9275 Hs.647051 NM_001707 HPRD:05786 BCL7B - B-cell CLL/lymphoma 7B protein-coding 13-PTNLD9-TUMOR_peak_30842 chr20 33296923 33297106 + 5.40180 NA intron (NM_021202, intron 3 of 4) CpG 4866 NM_021202 58476 Hs.516994 NM_021202 HPRD:15546 TP53INP2 C20orf110|DOR|PINH|dJ1181N3.1 tumor protein p53 inducible nuclear protein 2 protein-coding 13-PTNLD9-TUMOR_peak_43247 chr5 177716449 177716605 + 5.39731 NA intron (NM_173465, intron 3 of 28) intron (NM_173465, intron 3 of 28) -56704 NR_103509 85007 Hs.248746 NM_153373 HPRD:18482 PHYKPL AGXT2L2|PHLU 5-phosphohydroxy-L-lysine phospho-lyase protein-coding 13-PTNLD9-TUMOR_peak_16072 chr14 68000029 68000376 + 5.39731 NA intron (NM_020715, intron 1 of 28) CpG 194 NM_020715 57475 Hs.594236 NM_020715 HPRD:17862 PLEKHH1 - pleckstrin homology domain containing, family H (with MyTH4 domain) member 1 protein-coding 13-PTNLD9-TUMOR_peak_21040 chr17 39678274 39678370 + 5.39731 NA Intergenic Intergenic -3052 NM_002275 3866 Hs.654570 NM_002275 HPRD:01009 KRT15 CK15|K15|K1CO keratin 15 protein-coding 13-PTNLD9-TUMOR_peak_4747 chr1 184942890 184943002 + 5.39731 NA intron (NM_052966, intron 1 of 13) CpG 772 NM_052966 116496 Hs.518662 NM_052966 HPRD:10725 FAM129A C1orf24|NIBAN family with sequence similarity 129, member A protein-coding 13-PTNLD9-TUMOR_peak_962 chr1 32200300 32200486 + 5.39353 NA intron (NM_001294336, intron 24 of 31) intron (NM_001294336, intron 24 of 31) 23943 NR_036216 100423028 NR_036216 MIR4254 - microRNA 4254 ncRNA 13-PTNLD9-TUMOR_peak_46672 chr7 1186843 1186979 + 5.39353 NA Intergenic SVA_E|Other|Other -9018 NM_001134395 84310 Hs.653258 NM_032350 HPRD:14413 C7orf50 YCR016W chromosome 7 open reading frame 50 protein-coding 13-PTNLD9-TUMOR_peak_44438 chr6 30181869 30182155 + 5.39283 NA promoter-TSS (NM_001242783).7 promoter-TSS (NM_001242783).7 -741 NM_001242783 7726 Hs.485041 NM_003449 HPRD:02901 TRIM26 AFP|RNF95|ZNF173 tripartite motif containing 26 protein-coding 13-PTNLD9-TUMOR_peak_35385 chr3 112372979 112373155 + 5.39184 NA Intergenic Intergenic -13077 NM_199511 151887 Hs.477128 NM_199511 HPRD:10508 CCDC80 DRO1|SSG1|URB|okuribin coiled-coil domain containing 80 protein-coding 13-PTNLD9-TUMOR_peak_24331 chr19 17561258 17561352 + 5.39184 NA Intergenic L1MB5|LINE|L1 -1929 NM_001190844 100130519 Hs.436603 NM_001190844 ENSG00000188051 TMEM221 - transmembrane protein 221 protein-coding 13-PTNLD9-TUMOR_peak_23080 chr18 44880075 44880213 + 5.39184 NA Intergenic L1PA2|LINE|L1 -104590 NM_001278063 652991 Hs.585834 NM_001037802 ENSG00000215474 SKOR2 CORL2|FUSSEL18 SKI family transcriptional corepressor 2 protein-coding 13-PTNLD9-TUMOR_peak_30980 chr20 36746135 36746295 + 5.39184 NA Intergenic Intergenic 47485 NM_004613 7052 Hs.517033 NM_004613 HPRD:01825 TGM2 G-ALPHA-h|GNAH|HEL-S-45|TG2|TGC transglutaminase 2 protein-coding 13-PTNLD9-TUMOR_peak_14336 chr12 132380734 132380855 + 5.39184 NA intron (NM_003565, intron 3 of 27) CpG 1515 NM_003565 8408 Hs.47061 NM_003565 HPRD:11933 ULK1 ATG1|ATG1A|UNC51|Unc51.1|hATG1 unc-51 like autophagy activating kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_9964 chr11 60598643 60598788 + 5.39184 NA Intergenic Intergenic -10714 NM_024098 79080 Hs.4253 NM_024098 HPRD:08322 CCDC86 - coiled-coil domain containing 86 protein-coding 13-PTNLD9-TUMOR_peak_20149 chr16 89778257 89778502 + 5.39184 NA non-coding (NR_036480, exon 1 of 4) non-coding (NR_036480, exon 1 of 4) 115 NR_036480 100128881 Hs.666282 NR_036480 ENSG00000261373 VPS9D1-AS1 - VPS9D1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_18445 chr16 9162271 9162508 + 5.39184 NA Intergenic Intergenic -23148 NM_014117 29035 Hs.221497 NM_014117 C16orf72 PRO0149 chromosome 16 open reading frame 72 protein-coding 13-PTNLD9-TUMOR_peak_21045 chr17 39769162 39769403 + 5.39184 NA promoter-TSS (NM_005557) promoter-TSS (NM_005557) -203 NM_005557 3868 Hs.655160 NM_005557 HPRD:01018 KRT16 CK16|FNEPPK|K16|K1CP|KRT16A|NEPPK|PC1 keratin 16 protein-coding 13-PTNLD9-TUMOR_peak_48097 chr7 77045648 77046002 + 5.39184 NA promoter-TSS (NM_017439) promoter-TSS (NM_017439) -108 NM_017439 54103 Hs.186649 NM_017439 HPRD:18671 GSAP PION gamma-secretase activating protein protein-coding 13-PTNLD9-TUMOR_peak_3055 chr1 118823999 118824107 + 5.39184 NA Intergenic L1PA2|LINE|L1 -96205 NM_206996 200162 Hs.528821 NM_206996 HPRD:10146 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 13-PTNLD9-TUMOR_peak_32550 chr21 46265761 46266106 + 5.39184 NA Intergenic Intergenic 27885 NM_004339 754 Hs.474010 NM_004339 HPRD:04807 PTTG1IP C21orf1|C21orf3|PBF pituitary tumor-transforming 1 interacting protein protein-coding 13-PTNLD9-TUMOR_peak_4264 chr1 165742654 165742834 + 5.38692 NA non-coding (NR_125374, exon 2 of 3) non-coding (NR_125374, exon 2 of 3) 4578 NR_125374 100147773 Hs.633824 NR_125374 LOC100147773 - uncharacterized LOC100147773 ncRNA 13-PTNLD9-TUMOR_peak_26042 chr2 9375597 9375844 + 5.38692 NA intron (NM_003887, intron 1 of 27) intron (NM_003887, intron 1 of 27) 28826 NM_003887 8853 Hs.555902 NM_003887 HPRD:04820 ASAP2 AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 protein-coding 13-PTNLD9-TUMOR_peak_24260 chr19 16189761 16189926 + 5.38439 NA intron (NM_003290, intron 1 of 7) intron (NM_003290, intron 1 of 7) 2708 NM_003290 7171 Hs.631618 NM_003290 HPRD:11734 TPM4 HEL-S-108 tropomyosin 4 protein-coding 13-PTNLD9-TUMOR_peak_14026 chr12 120667740 120668021 + 5.38105 NA intron (NM_001243756, intron 1 of 10) intron (NM_001243756, intron 1 of 10) 20084 NM_025157 5829 Hs.446336 NM_002859 ENSG00000089159 PXN - paxillin protein-coding 13-PTNLD9-TUMOR_peak_49603 chr7 149833078 149833172 + 5.38069 NA Intergenic Intergenic 166944 NM_001164459 653857 Hs.664579 NM_001164458 ENSG00000106526 ACTR3C ARP11 ARP3 actin-related protein 3 homolog C (yeast) protein-coding 13-PTNLD9-TUMOR_peak_36696 chr3 170459208 170459386 + 5.38069 NA Intergenic L2b|LINE|L2 128748 NM_001099645 200916 Hs.380933 NM_001099645 ENSG00000163584 RPL22L1 - ribosomal protein L22-like 1 protein-coding 13-PTNLD9-TUMOR_peak_7620 chr10 71752870 71753006 + 5.38069 NA Intergenic SVA_E|Other|Other -59419 NM_018649 55506 Hs.499953 NM_018649 HPRD:13625 H2AFY2 macroH2A2 H2A histone family, member Y2 protein-coding 13-PTNLD9-TUMOR_peak_403 chr1 11073085 11073214 + 5.38069 NA intron (NM_007375, intron 1 of 5) CpG 470 NM_007375 23435 Hs.300624 NM_007375 TARDBP ALS10|TDP-43 TAR DNA binding protein protein-coding 13-PTNLD9-TUMOR_peak_39563 chr4 147097264 147097590 + 5.38069 NA intron (NM_007080, intron 1 of 3) CpG 592 NM_007080 11157 Hs.190520 NM_007080 HPRD:06286 LSM6 YDR378C LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_5293 chr1 206859266 206859409 + 5.38069 NA intron (NM_032960, intron 1 of 9) CpG 972 NM_004759 9261 Hs.643566 NM_004759 HPRD:11882 MAPKAPK2 MAPKAP-K2|MK-2|MK2 mitogen-activated protein kinase-activated protein kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_34611 chr3 50638548 50638653 + 5.38069 NA Intergenic Intergenic 10662 NM_013324 1154 Hs.655334 NM_013324 HPRD:03897 CISH BACTS2|CIS|CIS-1|G18|SOCS cytokine inducible SH2-containing protein protein-coding 13-PTNLD9-TUMOR_peak_54615 chr9 122036384 122036478 + 5.38069 NA intron (NM_014618, intron 2 of 7) intron (NM_014618, intron 2 of 7) 95308 NM_014618 1620 Hs.532316 NM_014618 HPRD:04181 BRINP1 DBC1|DBCCR1|FAM5A bone morphogenetic protein/retinoic acid inducible neural-specific 1 protein-coding 13-PTNLD9-TUMOR_peak_18693 chr16 19709378 19709480 + 5.38069 NA intron (NM_001300743, intron 26 of 27) MLT1E2|LTR|ERVL-MaLR -18349 NM_153208 124152 Hs.460217 NM_153208 HPRD:11340 IQCK - IQ motif containing K protein-coding 13-PTNLD9-TUMOR_peak_35598 chr3 123407287 123407400 + 5.37914 NA intron (NM_053025, intron 19 of 33) L2a|LINE|L2 -1148 NR_046629 100873940 Hs.667316 NR_046629 MYLK-AS2 - MYLK antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_19632 chr16 68554626 68554798 + 5.37914 NA Intergenic Intergenic -18949 NM_133458 146198 Hs.461074 NM_133458 HPRD:18729 ZFP90 FIK|NK10|ZNF756 ZFP90 zinc finger protein protein-coding 13-PTNLD9-TUMOR_peak_5228 chr1 205767835 205767929 + 5.37914 NA exon (NM_173854, exon 6 of 11) exon (NM_173854, exon 6 of 11) 14279 NM_173854 254428 Hs.20274 NM_173854 HPRD:15388 SLC41A1 MgtE solute carrier family 41 (magnesium transporter), member 1 protein-coding 13-PTNLD9-TUMOR_peak_51324 chr8 95731788 95731959 + 5.37914 NA promoter-TSS (NM_181787) promoter-TSS (NM_181787) -230 NM_181787 286148 Hs.567828 NM_181787 HPRD:11259 DPY19L4 - dpy-19-like 4 (C. elegans) protein-coding 13-PTNLD9-TUMOR_peak_5120 chr1 204010600 204010829 + 5.37914 NA promoter-TSS (NR_027902) promoter-TSS (NR_027902) -322 NR_027902 284573 Hs.406979 NR_027902 HPRD:08279 LINC00303 C1orf157|NCRNA00303 long intergenic non-protein coding RNA 303 ncRNA 13-PTNLD9-TUMOR_peak_34541 chr3 49458698 49458905 + 5.37914 NA TTS (NM_032316) TTS (NM_032316) 1310 NM_001164711 275 Hs.102 NM_000481 HPRD:01997 AMT GCE|GCST|GCVT|NKH aminomethyltransferase protein-coding 13-PTNLD9-TUMOR_peak_42771 chr5 156347518 156347757 + 5.37914 NA intron (NM_138379, intron 7 of 8) intron (NM_138379, intron 7 of 8) 42629 NM_138379 91937 Hs.334907 NM_138379 HPRD:15508 TIMD4 SMUCKLER|TIM4 T-cell immunoglobulin and mucin domain containing 4 protein-coding 13-PTNLD9-TUMOR_peak_33168 chr22 35609165 35609285 + 5.37914 NA Intergenic Intergenic -44220 NR_027780 10042 Hs.588815 NM_005487 HPRD:05267 HMGXB4 HMG2L1|HMGBCG|THC211630 HMG box domain containing 4 protein-coding 13-PTNLD9-TUMOR_peak_21318 chr17 45798650 45798761 + 5.37914 NA Intergenic Intergenic -11905 NM_013351 30009 Hs.272409 NM_013351 HPRD:05355 TBX21 T-PET|T-bet|TBET|TBLYM T-box 21 protein-coding 13-PTNLD9-TUMOR_peak_26194 chr2 16031403 16031563 + 5.37914 NA Intergenic Intergenic -29038 NR_125783 103752554 Hs.269571 NR_125783 MYCNUT MYCNUN|lncUSMycN MYCN upstream transcript (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_43625 chr6 5969650 5969786 + 5.37914 NA Intergenic Intergenic 34559 NM_001278711 51299 Hs.103291 NM_016588 HPRD:07592 NRN1 NRN|dJ380B8.2 neuritin 1 protein-coding 13-PTNLD9-TUMOR_peak_6652 chr10 22541473 22541589 + 5.37914 NA non-coding (NR_038921, exon 1 of 1) non-coding (NR_038921, exon 1 of 1) 530 NR_038921 100130992 Hs.48501 NR_038921 LOC100130992 - uncharacterized LOC100130992 ncRNA 13-PTNLD9-TUMOR_peak_15075 chr13 107570238 107570599 + 5.37914 NA Intergenic CpG 264190 NR_047026 100874173 Hs.569297 NR_047026 ENSG00000230156 LINC00443 - long intergenic non-protein coding RNA 443 ncRNA 13-PTNLD9-TUMOR_peak_34464 chr3 47462592 47462771 + 5.37914 NA intron (NM_012235, intron 10 of 22) intron (NM_012235, intron 10 of 22) 40190 NM_015466 25930 Hs.25524 NM_015466 HPRD:05959 PTPN23 HD-PTP|HDPTP|PTP-TD14 protein tyrosine phosphatase, non-receptor type 23 protein-coding 13-PTNLD9-TUMOR_peak_43809 chr6 12266136 12266384 + 5.37914 NA Intergenic Intergenic -24269 NM_001168319 1906 Hs.511899 NM_001955 HPRD:07030 EDN1 ARCND3|ET1|HDLCQ7|PPET1|QME endothelin 1 protein-coding 13-PTNLD9-TUMOR_peak_49111 chr7 130982997 130983200 + 5.37914 NA intron (NM_001145354, intron 2 of 18) intron (NM_001145354, intron 2 of 18) 29440 NR_125364 100506881 Hs.660830 NR_125364 ENSG00000236753 MKLN1-AS MKLN1-AS2 MKLN1 antisense RNA ncRNA 13-PTNLD9-TUMOR_peak_29620 chr2 205204930 205205136 + 5.37914 NA Intergenic L1M6|LINE|L1 -205483 NM_152526 117583 Hs.657382 NM_057177 HPRD:09795 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3LC|PAR3beta|Par3Lb par-3 family cell polarity regulator beta protein-coding 13-PTNLD9-TUMOR_peak_36692 chr3 170302531 170302754 + 5.37914 NA intron (NM_020949, intron 1 of 7) intron (NM_020949, intron 1 of 7) 1221 NM_020949 57709 Hs.596660 NM_020949 HPRD:17222 SLC7A14 PPP1R142 solute carrier family 7, member 14 protein-coding 13-PTNLD9-TUMOR_peak_16757 chr15 21313501 21313878 + 5.37499 NA Intergenic Intergenic 167922 NR_040094 348120 Hs.116287 NR_040094 ENSG00000258710 LINC01193 CT60 long intergenic non-protein coding RNA 1193 ncRNA 13-PTNLD9-TUMOR_peak_29398 chr2 192545069 192545170 + 5.37463 NA intron (NM_001031716, intron 2 of 5) intron (NM_001031716, intron 2 of 5) 2257 NR_045623 64859 Hs.591610 NM_022837 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_17889 chr15 85734309 85734416 + 5.37463 NA Intergenic Intergenic 14156 NR_049748 642423 Hs.681665 NR_049748 LOC642423 - golgin A2 pseudogene pseudo 13-PTNLD9-TUMOR_peak_6747 chr10 27149491 27149678 + 5.37388 NA intron (NM_001178116, intron 1 of 11) CpG 432 NM_001012750 10006 Hs.508148 NM_005470 HPRD:04336 ABI1 ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1 abl-interactor 1 protein-coding 13-PTNLD9-TUMOR_peak_34607 chr3 50605190 50605293 + 5.37366 NA promoter-TSS (NM_016210) promoter-TSS (NM_016210) -18 NM_001171743 51161 Hs.517860 NM_016210 HPRD:16654 C3orf18 G20 chromosome 3 open reading frame 18 protein-coding 13-PTNLD9-TUMOR_peak_54283 chr9 106856001 106856109 + 5.37366 NA promoter-TSS (NM_001265602) promoter-TSS (NM_001265602) -486 NM_001265602 10592 Hs.119023 NM_006444 HPRD:09277 SMC2 CAP-E|CAPE|SMC-2|SMC2L1 structural maintenance of chromosomes 2 protein-coding 13-PTNLD9-TUMOR_peak_9152 chr11 13946429 13946523 + 5.37366 NA Intergenic L2c|LINE|L2 -37708 NM_006108 10418 Hs.643864 NM_006108 SPON1 VSGP/F-spondin|f-spondin spondin 1, extracellular matrix protein protein-coding 13-PTNLD9-TUMOR_peak_34091 chr3 24283792 24283886 + 5.37366 NA intron (NM_000461, intron 2 of 9) intron (NM_000461, intron 2 of 9) 91024 NR_121667 101927854 Hs.570625 NR_121667 LOC101927854 - uncharacterized LOC101927854 ncRNA 13-PTNLD9-TUMOR_peak_38614 chr4 76862112 76862302 + 5.37366 NA promoter-TSS (NM_014435) promoter-TSS (NM_014435) -41 NM_001042402 27163 Hs.437365 NM_014435 HPRD:12122 NAAA ASAHL|PLT N-acylethanolamine acid amidase protein-coding 13-PTNLD9-TUMOR_peak_49812 chr7 156432554 156432681 + 5.36738 NA promoter-TSS (NM_001184996) promoter-TSS (NM_001184996) 731 NR_026865 129790 Hs.647014 NM_032625 HPRD:12908 C7orf13 MY040 chromosome 7 open reading frame 13 ncRNA 13-PTNLD9-TUMOR_peak_34189 chr3 31918414 31918551 + 5.36175 NA intron (NM_017784, intron 2 of 11) AluY|SINE|Alu -104784 NM_001137674 344787 Hs.585139 NM_001137674 ENSG00000197385 ZNF860 - zinc finger protein 860 protein-coding 13-PTNLD9-TUMOR_peak_24200 chr19 14661193 14661287 + 5.36175 NA intron (NR_038103, intron 1 of 12) intron (NR_038103, intron 1 of 12) 20861 NR_038103 9524 Hs.515642 NM_004868 HPRD:17076 TECR GPSN2|MRT14|SC2|TER trans-2,3-enoyl-CoA reductase protein-coding 13-PTNLD9-TUMOR_peak_15959 chr14 61939053 61939214 + 5.36175 NA intron (NM_006255, intron 9 of 13) intron (NM_006255, intron 9 of 13) 97779 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LOC101927780 - uncharacterized LOC101927780 ncRNA 13-PTNLD9-TUMOR_peak_16444 chr14 91593937 91594115 + 5.36175 NA intron (NM_001286471, intron 1 of 13) intron (NM_001286471, intron 1 of 13) 1256 NR_003709 100124539 Hs.693444 NR_003709 ENSG00000221102 SNORA11B - small nucleolar RNA, H/ACA box 11B snoRNA 13-PTNLD9-TUMOR_peak_39586 chr4 148753031 148753344 + 5.36175 NA intron (NM_024605, intron 3 of 22) intron (NM_024605, intron 3 of 22) 49441 NR_039962 100616246 NR_039962 MIR4799 - microRNA 4799 ncRNA 13-PTNLD9-TUMOR_peak_48918 chr7 126522826 126522967 + 5.36175 NA intron (NR_028041, intron 5 of 10) intron (NR_028041, intron 5 of 10) 175342 NR_030323 693177 NR_030323 MIR592 MIRN592|hsa-mir-592 microRNA 592 ncRNA 13-PTNLD9-TUMOR_peak_29542 chr2 202047655 202047859 + 5.36175 NA 5' UTR (NM_032976, exon 1 of 9) 5' UTR (NM_032976, exon 1 of 9) 136 NM_032974 843 Hs.5353 NM_001230 HPRD:03458 CASP10 ALPS2|FLICE2|MCH4 caspase 10, apoptosis-related cysteine peptidase protein-coding 13-PTNLD9-TUMOR_peak_28873 chr2 160761371 160761645 + 5.36175 NA promoter-TSS (NM_001198760) promoter-TSS (NM_001198760) -241 NM_001198759 100526664 Hs.153563 NM_001198759 ENSG00000248672 LY75-CD302 - LY75-CD302 readthrough protein-coding 13-PTNLD9-TUMOR_peak_26342 chr2 25896072 25896187 + 5.36175 NA intron (NM_183360, intron 1 of 19) CpG 387 NM_001256303 1838 Hs.307720 NM_021907 HPRD:09091 DTNB - dystrobrevin, beta protein-coding 13-PTNLD9-TUMOR_peak_5980 chr1 235904752 235904846 + 5.36175 NA exon (NM_000081, exon 31 of 53) exon (NM_000081, exon 31 of 53) -90745 NM_001098721 2786 Hs.159711 NM_004485 HPRD:11978 GNG4 - guanine nucleotide binding protein (G protein), gamma 4 protein-coding 13-PTNLD9-TUMOR_peak_33637 chr3 8366696 8366838 + 5.36175 NA intron (NR_033378, intron 3 of 3) MLT1N2|LTR|ERVL-MaLR 176577 NR_033378 100288428 Hs.651576 NR_033378 ENSG00000227110 LMCD1-AS1 - LMCD1 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_9888 chr11 57365627 57365759 + 5.36175 NA promoter-TSS (NM_001032295) promoter-TSS (NM_001032295) -12 NM_001032295 710 Hs.384598 NM_000062 HPRD:06033 SERPING1 C1IN|C1INH|C1NH|HAE1|HAE2 serpin peptidase inhibitor, clade G (C1 inhibitor), member 1 protein-coding 13-PTNLD9-TUMOR_peak_47482 chr7 50652826 50653065 + 5.36175 NA Intergenic MER5A|DNA|hAT-Charlie -19791 NM_001082971 1644 Hs.359698 NM_000790 HPRD:00145 DDC AADC dopa decarboxylase (aromatic L-amino acid decarboxylase) protein-coding 13-PTNLD9-TUMOR_peak_31401 chr20 48651446 48651580 + 5.36175 NA Intergenic Intergenic 6653 NR_051976 100887755 Hs.195705 NR_051976 TRERNA1 LINC00651|treRNA translation regulatory long non-coding RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_37162 chr3 188861232 188861428 + 5.36175 NA Intergenic Intergenic -28433 NM_198485 285386 Hs.729544 NM_198485 HPRD:13451 TPRG1 FAM79B tumor protein p63 regulated 1 protein-coding 13-PTNLD9-TUMOR_peak_34632 chr3 51716201 51716334 + 5.36175 NA intron (NM_001243727, intron 2 of 3) intron (NM_001243727, intron 2 of 3) 10624 NR_103463 51368 Hs.517864 NM_015926 HPRD:15492 TEX264 ZSIG11 testis expressed 264 protein-coding 13-PTNLD9-TUMOR_peak_51303 chr8 94886251 94886462 + 5.36175 NA Intergenic MER41B|LTR|ERV1 41991 NR_039602 100616169 NR_039602 miRBase:MI0003840 MIR378D2 - microRNA 378d-2 ncRNA 13-PTNLD9-TUMOR_peak_36991 chr3 184261907 184262026 + 5.36175 NA Intergenic Intergenic -17621 NM_004443 2049 Hs.2913 NM_004443 HPRD:03502 EPHB3 ETK2|HEK2|TYRO6 EPH receptor B3 protein-coding 13-PTNLD9-TUMOR_peak_31481 chr20 49812280 49812383 + 5.36175 NA Intergenic MSTB|LTR|ERVL-MaLR -172656 NM_002237 3755 Hs.118695 NM_002237 HPRD:04809 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel, subfamily G, member 1 protein-coding 13-PTNLD9-TUMOR_peak_13586 chr12 101540279 101540415 + 5.36175 NA Intergenic L1HS|LINE|L1 63669 NM_145913 160728 Hs.444536 NM_145913 SLC5A8 AIT|SMCT|SMCT1 solute carrier family 5 (sodium/monocarboxylate cotransporter), member 8 protein-coding 13-PTNLD9-TUMOR_peak_8719 chr11 268815 269009 + 5.36175 NA Intergenic L2a|LINE|L2 -9658 NM_001276700 171389 Hs.352611 NM_138329 HPRD:14806 NLRP6 AVR|CLR11.4|NALP6|NAVR|NAVR/AVR|PAN3|PYPAF5 NLR family, pyrin domain containing 6 protein-coding 13-PTNLD9-TUMOR_peak_40370 chr5 14144791 14145071 + 5.35598 NA intron (NM_007118, intron 1 of 56) CpG 1102 NM_007118 7204 Hs.130031 NM_007118 HPRD:03537 TRIO ARHGEF23|tgat trio Rho guanine nucleotide exchange factor protein-coding 13-PTNLD9-TUMOR_peak_8768 chr11 1054925 1055074 + 5.35418 NA Intergenic Intergenic -18293 NM_005961 4588 Hs.528432 NM_005961 ENSG00000184956 MUC6 MUC-6 mucin 6, oligomeric mucus/gel-forming protein-coding 13-PTNLD9-TUMOR_peak_40102 chr4 190959343 190959474 + 5.35418 NA Intergenic CpG -10996 NM_001286820 448831 Hs.626907 NM_001005217 HPRD:16418 FRG2 FRG2A FSHD region gene 2 protein-coding 13-PTNLD9-TUMOR_peak_22624 chr18 12207890 12208005 + 5.35418 NA intron (NR_049896, intron 2 of 4) L1PA2|LINE|L1 7169 NR_049896 497259 Hs.451609 NR_049896 C18orf61 - uncharacterized LOC497259 ncRNA 13-PTNLD9-TUMOR_peak_43050 chr5 172379049 172379156 + 5.35418 NA 3' UTR (NM_001031711, exon 10 of 10) 3' UTR (NM_001031711, exon 10 of 10) 6676 NR_026683 100268168 Hs.519766 NR_026682 ENSG00000204758 LOC100268168 - uncharacterized LOC100268168 ncRNA 13-PTNLD9-TUMOR_peak_47433 chr7 47525317 47525428 + 5.35418 NA intron (NM_022748, intron 3 of 30) intron (NM_022748, intron 3 of 30) 96370 NM_022748 64759 Hs.520814 NM_022748 ENSG00000136205 TNS3 TEM6|TENS1 tensin 3 protein-coding 13-PTNLD9-TUMOR_peak_2803 chr1 110630824 110630918 + 5.35418 NA Intergenic Intergenic -17549 NM_006492 257 Hs.669953 NM_006492 ALX3 FND|FND1 ALX homeobox 3 protein-coding 13-PTNLD9-TUMOR_peak_43761 chr6 11094773 11094871 + 5.35392 NA intron (NM_001135575, intron 1 of 1) intron (NM_001135575, intron 1 of 1) 556 NM_001135575 221710 Hs.656600 NM_001135575 ENSG00000224531 SMIM13 C6orf228 small integral membrane protein 13 protein-coding 13-PTNLD9-TUMOR_peak_1464 chr1 43832021 43832118 + 5.35016 NA intron (NR_046117, intron 1 of 7) intron (NR_046117, intron 1 of 7) 1340 NM_001256399 64834 Hs.25597 NM_022821 HPRD:10935 ELOVL1 Ssc1 ELOVL fatty acid elongase 1 protein-coding 13-PTNLD9-TUMOR_peak_17573 chr15 70800260 70800433 + 5.34946 NA Intergenic MIRb|SINE|MIR 194274 NM_001008224 55075 Hs.108049 NM_018003 HPRD:11657 UACA NUCLING uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding 13-PTNLD9-TUMOR_peak_1128 chr1 36600541 36600737 + 5.34946 NA Intergenic Intergenic -9954 NM_005202 1296 Hs.353001 NM_005202 HPRD:08347 COL8A2 FECD|FECD1|PPCD|PPCD2 collagen, type VIII, alpha 2 protein-coding 13-PTNLD9-TUMOR_peak_38555 chr4 71571259 71571455 + 5.34946 NA intron (NM_001130709, intron 1 of 11) CpG 703 NM_001130709 22902 Hs.740904 NM_014961 HPRD:15251 RUFY3 RIPX|SINGAR1 RUN and FYVE domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_140 chr1 2466724 2466879 + 5.34946 NA Intergenic MIR|SINE|MIR -5117 NM_001010926 388585 Hs.57971 NM_001010926 HPRD:16240 HES5 bHLHb38 hes family bHLH transcription factor 5 protein-coding 13-PTNLD9-TUMOR_peak_14730 chr13 47370724 47370878 + 5.34473 NA intron (NM_001984, intron 1 of 9) CpG 566 NM_001984 2098 Hs.432491 NM_001984 HPRD:00588 ESD FGH esterase D protein-coding 13-PTNLD9-TUMOR_peak_42094 chr5 133489500 133489686 + 5.34473 NA Intergenic Intergenic 23131 NM_170679 6500 Hs.171626 NM_006930 SKP1 EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A S-phase kinase-associated protein 1 protein-coding 13-PTNLD9-TUMOR_peak_37052 chr3 186132673 186132901 + 5.34473 NA Intergenic L2b|LINE|L2 -52764 NM_001080744 1608 Hs.683449 NM_001346 HPRD:03510 DGKG DAGK3|DGK-GAMMA diacylglycerol kinase, gamma 90kDa protein-coding 13-PTNLD9-TUMOR_peak_7458 chr10 61469493 61469790 + 5.34473 NA promoter-TSS (NM_194298) promoter-TSS (NM_194298) 8 NM_194298 220963 Hs.499709 NM_194298 HPRD:15348 SLC16A9 C10orf36|MCT9 solute carrier family 16, member 9 protein-coding 13-PTNLD9-TUMOR_peak_40217 chr5 3660097 3660342 + 5.34473 NA Intergenic Intergenic 64051 NM_024337 79192 Hs.424156 NM_024337 HPRD:16203 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_31002 chr20 37418265 37418412 + 5.34473 NA Intergenic MLT1B|LTR|ERVL-MaLR -16010 NM_015568 26051 Hs.45719 NM_015568 HPRD:15168 PPP1R16B ANKRD4|TIMAP protein phosphatase 1, regulatory subunit 16B protein-coding 13-PTNLD9-TUMOR_peak_23002 chr18 41473000 41473275 + 5.34473 NA Intergenic Intergenic -615522 NM_020783 6860 Hs.8059 NM_020783 HPRD:02519 SYT4 HsT1192 synaptotagmin IV protein-coding 13-PTNLD9-TUMOR_peak_34127 chr3 26699012 26699122 + 5.34473 NA intron (NM_052953, intron 1 of 1) intron (NM_052953, intron 1 of 1) 34767 NM_052953 116135 Hs.517868 NM_052953 HPRD:14318 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 13-PTNLD9-TUMOR_peak_4337 chr1 168426660 168426858 + 5.34473 NA Intergenic LTR14C|LTR|ERVK -34865 NR_037851 100505918 Hs.568494 NR_037851 LOC100505918 - uncharacterized LOC100505918 ncRNA 13-PTNLD9-TUMOR_peak_37579 chr4 1422389 1422535 + 5.34473 NA Intergenic Intergenic -22232 NM_001290079 54729 Hs.526396 NM_001290079 NKX1-1 HSPX153|NKX-1.1|SAX2 NK1 homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_12452 chr12 31926411 31926574 + 5.34473 NA Intergenic Intergenic 18683 NM_001013699 440093 Hs.448697 NM_001013699 HPRD:18443 H3F3C H3.5 H3 histone, family 3C protein-coding 13-PTNLD9-TUMOR_peak_31136 chr20 43124512 43124654 + 5.34473 NA TTS (NM_198941) TTS (NM_198941) 20057 NM_024331 79183 Hs.283869 NM_024331 HPRD:09837 TTPAL C20orf121 tocopherol (alpha) transfer protein-like protein-coding 13-PTNLD9-TUMOR_peak_40888 chr5 54932669 54932803 + 5.34473 NA intron (NR_047649, intron 10 of 13) intron (NR_047649, intron 10 of 13) 56145 NR_047649 153129 Hs.745105 NM_173514 HPRD:08817 SLC38A9 - solute carrier family 38, member 9 protein-coding 13-PTNLD9-TUMOR_peak_14542 chr13 31379829 31380000 + 5.34473 NA intron (NR_047012, intron 1 of 1) intron (NR_047012, intron 1 of 1) 2571 NR_047012 100874158 Hs.577982 NR_047012 ENSG00000237879 LINC00398 - long intergenic non-protein coding RNA 398 ncRNA 13-PTNLD9-TUMOR_peak_34391 chr3 44903243 44903387 + 5.34473 NA promoter-TSS (NM_144638) promoter-TSS (NM_144638) -65 NR_030290 693149 NR_030290 MIR564 MIRN564|hsa-mir-564 microRNA 564 ncRNA 13-PTNLD9-TUMOR_peak_56763 chrX 154842110 154842222 + 5.34473 NA intron (NM_001184797, intron 1 of 6) CpG 456 NM_018196 55217 Hs.133321 NM_018196 HPRD:06743 TMLHE AUTSX6|BBOX2|TMLD|TMLH|TMLHED|XAP130 trimethyllysine hydroxylase, epsilon protein-coding 13-PTNLD9-TUMOR_peak_26834 chr2 47137007 47137109 + 5.34473 NA intron (NM_001171508, intron 1 of 3) intron (NM_001171508, intron 1 of 3) 5949 NM_139279 90411 Hs.662152 NM_139279 HPRD:09693 MCFD2 F5F8D|F5F8D2|LMAN1IP|SDNSF multiple coagulation factor deficiency 2 protein-coding 13-PTNLD9-TUMOR_peak_7502 chr10 64003187 64003282 + 5.34473 NA intron (NM_001282941, intron 3 of 4) intron (NM_001282941, intron 3 of 4) 25388 NM_145307 219790 Hs.58559 NM_145307 HPRD:17863 RTKN2 PLEKHK1|bA531F24.1 rhotekin 2 protein-coding 13-PTNLD9-TUMOR_peak_14391 chr13 21005329 21005524 + 5.34473 NA intron (NM_015974, intron 5 of 7) intron (NM_015974, intron 5 of 7) 2559 NR_039721 100616304 NR_039721 MIR4499 - microRNA 4499 ncRNA 13-PTNLD9-TUMOR_peak_33697 chr3 9811344 9811469 + 5.34473 NA intron (NM_003656, intron 1 of 11) intron (NM_003656, intron 1 of 11) 262 NM_003656 8536 Hs.434875 NM_003656 HPRD:05412 CAMK1 CAMKI calcium/calmodulin-dependent protein kinase I protein-coding 13-PTNLD9-TUMOR_peak_22838 chr18 24551415 24551563 + 5.34473 NA intron (NM_031422, intron 4 of 5) MLT1I|LTR|ERVL-MaLR -105773 NM_001650 361 Hs.315369 NM_001650 HPRD:02631 AQP4 HMIWC2|MIWC aquaporin 4 protein-coding 13-PTNLD9-TUMOR_peak_45814 chr6 105389392 105389486 + 5.34473 NA Intergenic CpG-22407 -1037 NR_046407 100113403 Hs.649249 NR_046407 ENSG00000203809 LINC00577 C6orf220|dJ439I14.1 long intergenic non-protein coding RNA 577 ncRNA 13-PTNLD9-TUMOR_peak_3111 chr1 120821368 120821641 + 5.34456 NA Intergenic Intergenic -17501 NM_001100910 653820 Hs.339665 NM_001100910 ENSG00000188610 FAM72B p17 family with sequence similarity 72, member B protein-coding 13-PTNLD9-TUMOR_peak_22326 chr17 80246364 80246503 + 5.34380 NA Intergenic L1MC3|LINE|L1 -14815 NR_110578 1453 Hs.631725 NM_001893 HPRD:02920 CSNK1D ASPS|CKIdelta|FASPS2|HCKID casein kinase 1, delta protein-coding 13-PTNLD9-TUMOR_peak_47757 chr7 66119710 66119892 + 5.34380 NA intron (NR_110037, intron 1 of 3) CpG 295 NR_110037 100996437 Hs.667408 NR_110037 LOC100996437 - uncharacterized LOC100996437 ncRNA 13-PTNLD9-TUMOR_peak_52313 chr8 141467203 141467426 + 5.33773 NA intron (NM_031466, intron 1 of 22) CpG 547 NM_001160372 83696 Hs.654911 NM_031466 HPRD:18136 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|TRS120 trafficking protein particle complex 9 protein-coding 13-PTNLD9-TUMOR_peak_28130 chr2 113916007 113916145 + 5.33184 NA Intergenic Intergenic -15484 NM_012455 23550 Hs.516306 NM_012455 HPRD:15191 PSD4 EFA6B|TIC pleckstrin and Sec7 domain containing 4 protein-coding 13-PTNLD9-TUMOR_peak_17007 chr15 34612980 34613101 + 5.33184 NA intron (NM_001042495, intron 2 of 25) AluY|SINE|Alu -2019 NM_005135 9990 Hs.510939 NM_005135 SLC12A6 ACCPN|KCC3|KCC3A|KCC3B solute carrier family 12 (potassium/chloride transporter), member 6 protein-coding 13-PTNLD9-TUMOR_peak_50308 chr8 22612651 22612849 + 5.33184 NA intron (NM_144962, intron 4 of 6) intron (NM_144962, intron 4 of 6) -61935 NM_004430 1960 Hs.534313 NM_004430 HPRD:03881 EGR3 EGR-3|PILOT early growth response 3 protein-coding 13-PTNLD9-TUMOR_peak_7933 chr10 88123039 88123155 + 5.33184 NA intron (NM_017551, intron 2 of 15) CpG 3153 NM_017551 2894 Hs.530653 NM_017551 HPRD:17078 GRID1 GluD1 glutamate receptor, ionotropic, delta 1 protein-coding 13-PTNLD9-TUMOR_peak_29059 chr2 171830519 171830638 + 5.33184 NA Intergenic CpG 45542 NM_015530 26003 Hs.431317 NM_015530 HPRD:08303 GORASP2 GOLPH6|GRASP55|GRS2|p59 golgi reassembly stacking protein 2, 55kDa protein-coding 13-PTNLD9-TUMOR_peak_23353 chr18 59617252 59617455 + 5.33184 NA Intergenic Intergenic -57049 NM_173557 220441 Hs.165062 NM_173557 RNF152 - ring finger protein 152 protein-coding 13-PTNLD9-TUMOR_peak_23185 chr18 48045206 48045368 + 5.33184 NA Intergenic Intergenic -41197 NM_002747 5596 Hs.433728 NM_002747 HPRD:01497 MAPK4 ERK-4|ERK4|PRKM4|p63-MAPK|p63MAPK mitogen-activated protein kinase 4 protein-coding 13-PTNLD9-TUMOR_peak_3501 chr1 149636234 149636446 + 5.33184 NA intron (NR_111950, intron 6 of 8) intron (NR_111950, intron 6 of 8) 30423 NR_125392 101954268 NR_125392 RNVU1-20 RNU1-110|vU1.20 RNA, variant U1 small nuclear 20 snRNA 13-PTNLD9-TUMOR_peak_13017 chr12 56964025 56964164 + 5.33184 NA intron (NM_002898, intron 4 of 13) intron (NM_002898, intron 4 of 13) 48485 NM_002898 5939 Hs.505729 NM_002898 RBMS2 SCR3 RNA binding motif, single stranded interacting protein 2 protein-coding 13-PTNLD9-TUMOR_peak_7491 chr10 63656835 63657026 + 5.33184 NA Intergenic Intergenic -4083 NM_032199 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT rich interactive domain 5B (MRF1-like) protein-coding 13-PTNLD9-TUMOR_peak_14459 chr13 26760705 26760846 + 5.33184 NA Intergenic CpG 35119 NM_183044 6049 Hs.136885 NM_005977 HPRD:05027 RNF6 - ring finger protein (C3H2C3 type) 6 protein-coding 13-PTNLD9-TUMOR_peak_11662 chr11 130348223 130348396 + 5.33184 NA Intergenic Intergenic 29440 NM_139055 170689 Hs.534221 NM_139055 HPRD:06330 ADAMTS15 - ADAM metallopeptidase with thrombospondin type 1 motif, 15 protein-coding 13-PTNLD9-TUMOR_peak_33817 chr3 12917749 12917859 + 5.33184 NA Intergenic CpG -34723 NM_001007073 6161 Hs.265174 NM_000994 HPRD:17995 RPL32 L32 ribosomal protein L32 protein-coding 13-PTNLD9-TUMOR_peak_45745 chr6 92401502 92401610 + 5.33184 NA Intergenic Zaphod|DNA|hAT-Tip100 -1410 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility candidate 6 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_23019 chr18 42372752 42372930 + 5.32778 NA intron (NM_001130110, intron 2 of 3) intron (NM_001130110, intron 2 of 3) 111978 NM_015559 26040 Hs.435458 NM_015559 HPRD:10224 SETBP1 SEB SET binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_2821 chr1 110950182 110950453 + 5.32778 NA promoter-TSS (NR_102697) promoter-TSS (NR_102697) -114 NR_102697 101410535 Hs.559121 NR_102697 LAMTOR5-AS1 - LAMTOR5 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_18696 chr16 19727014 19727115 + 5.32778 NA promoter-TSS (NM_153208) promoter-TSS (NM_153208) -714 NM_153208 124152 Hs.460217 NM_153208 HPRD:11340 IQCK - IQ motif containing K protein-coding 13-PTNLD9-TUMOR_peak_2381 chr1 88446227 88446482 + 5.32778 NA Intergenic Intergenic -609016 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 13-PTNLD9-TUMOR_peak_17695 chr15 75993003 75993144 + 5.32778 NA intron (NM_001897, intron 1 of 9) intron (NM_001897, intron 1 of 9) 12116 NM_001897 1464 Hs.513044 NM_001897 HPRD:03105 CSPG4 HMW-MAA|MCSP|MCSPG|MEL-CSPG|MSK16|NG2 chondroitin sulfate proteoglycan 4 protein-coding 13-PTNLD9-TUMOR_peak_36854 chr3 178387060 178387283 + 5.32778 NA intron (NM_001278911, intron 1 of 4) intron (NM_001278911, intron 1 of 4) 110683 NM_001278911 10242 Hs.478368 NM_005832 HPRD:05557 KCNMB2 - potassium large conductance calcium-activated channel, subfamily M, beta member 2 protein-coding 13-PTNLD9-TUMOR_peak_18911 chr16 29093412 29093797 + 5.32778 NA intron (NR_003369, intron 3 of 16) CpG 7441 NR_003369 653390 Hs.720348 NR_003369 ENSG00000103472 RRN3P2 - RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_16874 chr15 28983150 28983634 + 5.32778 NA intron (NR_026589, intron 1 of 8) CpG 663 NR_026589 440253 Hs.558967 NR_026589 WHAMMP2 WHAMML2|WHDC1L2 WAS protein homolog associated with actin, golgi membranes and microtubules pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_54765 chr9 127624608 127624756 + 5.32581 NA promoter-TSS (NM_007209) promoter-TSS (NM_007209) -442 NM_007209 11224 Hs.182825 NM_007209 HPRD:10200 RPL35 L35 ribosomal protein L35 protein-coding 13-PTNLD9-TUMOR_peak_34905 chr3 69139369 69139529 + 5.32581 NA intron (NM_006407, intron 1 of 2) intron (NM_006407, intron 1 of 2) 5359 NM_006407 10550 Hs.518060 NM_006407 HPRD:09303 ARL6IP5 DERP11|GTRAP3-18|JWA|PRAF3|addicsin|hp22|jmx ADP-ribosylation factor-like 6 interacting protein 5 protein-coding 13-PTNLD9-TUMOR_peak_52960 chr9 27528387 27528526 + 5.32581 NA intron (NM_024761, intron 1 of 3) CpG 1394 NM_024761 79817 Hs.369022 NM_024761 HPRD:14728 MOB3B C9orf35|MOB1D|MOBKL2B MOB kinase activator 3B protein-coding 13-PTNLD9-TUMOR_peak_49188 chr7 134218221 134218389 + 5.32581 NA intron (NM_020299, intron 4 of 9) MIRb|SINE|MIR 5961 NM_020299 57016 Hs.116724 NM_020299 HPRD:05271 AKR1B10 AKR1B11|AKR1B12|ALDRLn|ARL-1|ARL1|HIS|HSI aldo-keto reductase family 1, member B10 (aldose reductase) protein-coding 13-PTNLD9-TUMOR_peak_12347 chr12 26392992 26393163 + 5.32581 NA Intergenic Intergenic 44571 NM_005086 8082 Hs.183428 NM_005086 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 13-PTNLD9-TUMOR_peak_36021 chr3 134369816 134370066 + 5.32191 NA promoter-TSS (NM_178554) promoter-TSS (NM_178554) -77 NM_178554 339855 Hs.146730 NM_178554 KY - kyphoscoliosis peptidase protein-coding 13-PTNLD9-TUMOR_peak_37551 chr4 980718 980841 + 5.32191 NA promoter-TSS (NM_000203) promoter-TSS (NM_000203) -6 NM_000203 3425 Hs.89560 NM_000203 HPRD:02016 IDUA IDA|MPS1 iduronidase, alpha-L- protein-coding 13-PTNLD9-TUMOR_peak_50288 chr8 22405603 22405787 + 5.32191 NA Intergenic Intergenic -3556 NM_005775 10174 Hs.528572 NM_005775 HPRD:11535 SORBS3 SCAM-1|SCAM1|SH3D4 sorbin and SH3 domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_38186 chr4 38162555 38162834 + 5.32191 NA Intergenic L2c|LINE|L2 41119 NM_001253915 23216 Hs.176503 NM_015173 HPRD:18161 TBC1D1 TBC|TBC1 TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1 protein-coding 13-PTNLD9-TUMOR_peak_22374 chr17 81057398 81057522 + 5.31388 NA Intergenic Intergenic 19893 NM_001004431 284207 Hs.378821 NM_001004431 HPRD:11255 METRNL - meteorin, glial cell differentiation regulator-like protein-coding 13-PTNLD9-TUMOR_peak_42418 chr5 141704815 141705001 + 5.31388 NA promoter-TSS (NM_030964) promoter-TSS (NM_030964) 50 NR_120664 101926941 Hs.658945 NR_120664 ENSG00000231185 LOC101926941 - uncharacterized LOC101926941 ncRNA 13-PTNLD9-TUMOR_peak_17835 chr15 83419130 83419331 + 5.31042 NA promoter-TSS (NR_110099) promoter-TSS (NR_110099) -86 NR_110098 100505616 Hs.513091 NR_110096 ENSG00000250988 SNHG21 FSD2-AS1|SCARNA15HG small nucleolar RNA host gene 21 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_11411 chr11 119599854 119599982 + 5.31042 NA promoter-TSS (NR_120587) promoter-TSS (NR_120587) -375 NR_120587 102724301 Hs.637640 NR_120587 LOC102724301 - uncharacterized LOC102724301 ncRNA 13-PTNLD9-TUMOR_peak_30717 chr20 30084957 30085056 + 5.31042 NA Intergenic Intergenic 11425 NR_024358 140875 Hs.283478 NR_024358 ENSG00000233354 LINC00028 C20orf93|NCRNA00028|dJ1093G12.6 long intergenic non-protein coding RNA 28 ncRNA 13-PTNLD9-TUMOR_peak_9363 chr11 27414420 27414556 + 5.31042 NA intron (NM_018490, intron 2 of 17) intron (NM_018490, intron 2 of 17) -29693 NM_080654 91057 Hs.143733 NM_030771 HPRD:14868 CCDC34 NY-REN-41|RAMA3 coiled-coil domain containing 34 protein-coding 13-PTNLD9-TUMOR_peak_18698 chr16 19816305 19816497 + 5.31042 NA intron (NM_153208, intron 8 of 9) intron (NM_153208, intron 8 of 9) 79750 NM_016235 51704 Hs.148685 NM_016235 HPRD:16177 GPRC5B RAIG-2|RAIG2 G protein-coupled receptor, class C, group 5, member B protein-coding 13-PTNLD9-TUMOR_peak_25626 chr19 54538990 54539247 + 5.31042 NA Intergenic Intergenic 28089 NM_198481 284415 Hs.444431 NM_198481 HPRD:15615 VSTM1 SIRL-1|SIRL1|UNQ3033 V-set and transmembrane domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_8010 chr10 93169319 93169423 + 5.31042 NA promoter-TSS (NM_173497) promoter-TSS (NM_173497) -671 NM_001284274 143279 Hs.596096 NM_173497 HPRD:13643 HECTD2 - HECT domain containing E3 ubiquitin protein ligase 2 protein-coding 13-PTNLD9-TUMOR_peak_40034 chr4 186637346 186637638 + 5.31042 NA intron (NM_001145672, intron 1 of 20) MIR|SINE|MIR -59369 NM_001145674 8470 Hs.619806 NM_003603 HPRD:12473 SORBS2 ARGBP2|PRO0618 sorbin and SH3 domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_14341 chr12 132562915 132563055 + 5.31042 NA 3' UTR (NM_015409, exon 53 of 53) 3' UTR (NM_015409, exon 53 of 53) -5843 NR_003290 347918 Hs.122115 NM_182613 HPRD:13413 EP400NL - EP400 N-terminal like pseudo 13-PTNLD9-TUMOR_peak_25587 chr19 53636117 53636214 + 5.31042 NA promoter-TSS (NM_001136038) promoter-TSS (NM_001136038) 6 NM_001164309 55786 Hs.147765 NM_018355 HPRD:18340 ZNF415 - zinc finger protein 415 protein-coding 13-PTNLD9-TUMOR_peak_7543 chr10 68202904 68202998 + 5.31042 NA intron (NM_013266, intron 11 of 17) L1PA4|LINE|L1 -482841 NM_178011 347731 Hs.652155 NM_178011 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 13-PTNLD9-TUMOR_peak_17610 chr15 72668029 72668248 + 5.31042 NA promoter-TSS (NR_027262) promoter-TSS (NR_027262) -316 NR_027262 80072 Hs.591113 NM_025005 ENSG00000260339 HEXA-AS1 C15orf34 HEXA antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_38425 chr4 54458377 54458503 + 5.31042 NA promoter-TSS (NM_001126328) promoter-TSS (NM_001126328) -683 NR_046827 100873955 Hs.351074 NR_046827 LNX1-AS2 - LNX1 antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_23266 chr18 55405014 55405195 + 5.31042 NA intron (NM_005603, intron 1 of 27) intron (NM_005603, intron 1 of 27) 65223 NM_005603 5205 Hs.216623 NM_005603 HPRD:03867 ATP8B1 ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1 ATPase, aminophospholipid transporter, class I, type 8B, member 1 protein-coding 13-PTNLD9-TUMOR_peak_18627 chr16 16103326 16103442 + 5.31042 NA intron (NM_004996, intron 2 of 30) intron (NM_004996, intron 2 of 30) 59950 NM_004996 4363 Hs.391464 NM_004996 HPRD:01153 ABCC1 ABC29|ABCC|GS-X|MRP|MRP1 ATP-binding cassette, sub-family C (CFTR/MRP), member 1 protein-coding 13-PTNLD9-TUMOR_peak_36459 chr3 154830552 154830718 + 5.31042 NA intron (NM_007289, intron 3 of 22) L2c|LINE|L2 32556 NM_007289 4311 Hs.307734 NM_000902 HPRD:00392 MME CALLA|CD10|NEP|SFE membrane metallo-endopeptidase protein-coding 13-PTNLD9-TUMOR_peak_7942 chr10 88713419 88713569 + 5.31042 NA intron (NM_024756, intron 1 of 6) intron (NM_024756, intron 1 of 6) 3931 NM_024756 79812 Hs.524479 NM_024756 HPRD:10601 MMRN2 EMILIN-3|EMILIN3|ENDOGLYX-1 multimerin 2 protein-coding 13-PTNLD9-TUMOR_peak_28922 chr2 162897999 162898127 + 5.31042 NA intron (NM_001935, intron 5 of 25) intron (NM_001935, intron 5 of 25) 32989 NM_001935 1803 Hs.368912 NM_001935 HPRD:02187 DPP4 ADABP|ADCP2|CD26|DPPIV|TP103 dipeptidyl-peptidase 4 protein-coding 13-PTNLD9-TUMOR_peak_918 chr1 31122385 31122682 + 5.31042 NA Intergenic Intergenic -69086 NR_034182 100129196 Hs.659751 NR_034182 ENSG00000186056 MATN1-AS1 - MATN1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_2947 chr1 115605258 115605541 + 5.31042 NA intron (NM_005725, intron 2 of 7) intron (NM_005725, intron 2 of 7) 26722 NM_005725 10100 Hs.310458 NM_005725 HPRD:18233 TSPAN2 NET3|TSN2|TSPAN-2 tetraspanin 2 protein-coding 13-PTNLD9-TUMOR_peak_5527 chr1 223872035 223872129 + 5.30189 NA Intergenic Intergenic -17213 NM_001146068 824 Hs.350899 NM_001748 HPRD:00254 CAPN2 CANP2|CANPL2|CANPml|mCANP calpain 2, (m/II) large subunit protein-coding 13-PTNLD9-TUMOR_peak_21652 chr17 57512702 57512979 + 5.30189 NA intron (NR_110813, intron 2 of 2) intron (NR_110813, intron 2 of 2) 69396 NR_039882 100616204 NR_039882 MIR4729 - microRNA 4729 ncRNA 13-PTNLD9-TUMOR_peak_34957 chr3 72348623 72348723 + 5.30189 NA Intergenic Intergenic 147101 NM_012234 23429 Hs.7910 NM_012234 RYBP AAP1|DEDAF|YEAF1 RING1 and YY1 binding protein protein-coding 13-PTNLD9-TUMOR_peak_31696 chr20 56592701 56592936 + 5.30189 NA Intergenic Intergenic 122368 NR_039757 100616353 NR_039757 miRBase:MI0016899 MIR4532 - microRNA 4532 ncRNA 13-PTNLD9-TUMOR_peak_14213 chr12 124942570 124942664 + 5.30189 NA intron (NM_001077261, intron 7 of 47) intron (NM_001077261, intron 7 of 47) 109393 NM_006312 9612 Hs.137510 NM_006312 HPRD:02910 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 13-PTNLD9-TUMOR_peak_56272 chrX 100074922 100075082 + 5.30189 NA promoter-TSS (NM_001325) promoter-TSS (NM_001325) -346 NM_001325 1478 Hs.132370 NM_001325 HPRD:02652 CSTF2 CstF-64 cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa protein-coding 13-PTNLD9-TUMOR_peak_14189 chr12 124018864 124018982 + 5.30189 NA promoter-TSS (NM_178314) promoter-TSS (NM_178314) -658 NM_178314 353116 Hs.530315 NM_178314 HPRD:13435 RILPL1 GOSPEL|RLP1 Rab interacting lysosomal protein-like 1 protein-coding 13-PTNLD9-TUMOR_peak_35549 chr3 122072211 122072387 + 5.30189 NA Intergenic Intergenic 28288 NM_005213 1475 Hs.518198 NM_005213 HPRD:01697 CSTA AREI|STF1|STFA cystatin A (stefin A) protein-coding 13-PTNLD9-TUMOR_peak_37671 chr4 3625848 3625943 + 5.30189 NA Intergenic Intergenic 47299 NR_040045 285492 Hs.145563 NM_173661 LINC00955 - long intergenic non-protein coding RNA 955 ncRNA 13-PTNLD9-TUMOR_peak_21866 chr17 66452927 66453028 + 5.30189 NA intron (NM_017983, intron 1 of 12) intron (NM_017983, intron 1 of 12) 676 NM_017983 55062 Hs.463964 NM_017983 HPRD:08540 WIPI1 ATG18|ATG18A|WIPI49 WD repeat domain, phosphoinositide interacting 1 protein-coding 13-PTNLD9-TUMOR_peak_35852 chr3 129118478 129118641 + 5.30189 NA promoter-TSS (NR_003111) promoter-TSS (NR_003111) -277 NR_003111 132241 Hs.477537 NR_003111 ENSG00000251474 RPL32P3 - ribosomal protein L32 pseudogene 3 pseudo 13-PTNLD9-TUMOR_peak_11536 chr11 125757774 125757891 + 5.30189 NA intron (NM_001134793, intron 1 of 2) CpG 877 NM_001134793 219844 Hs.98133 NM_145014 HPRD:08148 HYLS1 HLS hydrolethalus syndrome 1 protein-coding 13-PTNLD9-TUMOR_peak_31496 chr20 50120277 50120485 + 5.30189 NA intron (NM_001258296, intron 3 of 10) intron (NM_001258296, intron 3 of 10) 38877 NM_001258297 4773 Hs.744148 NM_012340 HPRD:02730 NFATC2 NFAT1|NFATP nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 protein-coding 13-PTNLD9-TUMOR_peak_34581 chr3 50192440 50192581 + 5.30189 NA promoter-TSS (NM_004186) promoter-TSS (NM_004186) -338 NM_004186 6405 Hs.32981 NM_004186 HPRD:03079 SEMA3F SEMA-IV|SEMA4|SEMAK sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F protein-coding 13-PTNLD9-TUMOR_peak_41953 chr5 127075398 127075641 + 5.30189 NA Intergenic L1PA2|LINE|L1 86812 NM_001127385 613212 Hs.66194 NM_001048252 ENSG00000205279 CTXN3 KABE cortexin 3 protein-coding 13-PTNLD9-TUMOR_peak_31669 chr20 56000522 56000616 + 5.30189 NA Intergenic L2|LINE|L2 34115 NM_001291780 55544 Hs.236361 NM_017495 HPRD:15268 RBM38 HSRNASEB|RNPC1|SEB4B|SEB4D|dJ800J21.2 RNA binding motif protein 38 protein-coding 13-PTNLD9-TUMOR_peak_11949 chr12 6289582 6289809 + 5.30189 NA Intergenic Intergenic -19787 NM_001769 928 Hs.114286 NM_001769 HPRD:00880 CD9 BTCC-1|DRAP-27|MIC3|MRP-1|TSPAN-29|TSPAN29 CD9 molecule protein-coding 13-PTNLD9-TUMOR_peak_1970 chr1 59967992 59968126 + 5.30189 NA intron (NM_001113411, intron 6 of 16) intron (NM_001113411, intron 6 of 16) -13242 NM_001278224 55277 Hs.444301 NM_018291 HPRD:07721 FGGY - FGGY carbohydrate kinase domain containing protein-coding 13-PTNLD9-TUMOR_peak_18040 chr15 98447497 98447688 + 5.30189 NA Intergenic Intergenic -29933 NR_024173 91948 Hs.130423 NR_024172 ENSG00000251209 LINC00923 - long intergenic non-protein coding RNA 923 ncRNA 13-PTNLD9-TUMOR_peak_122 chr1 2266464 2266580 + 5.30189 NA intron (NM_024848, intron 12 of 13) intron (NM_024848, intron 12 of 13) 17578 NR_024489 100129534 Hs.655313 NM_001127577 LOC100129534 - small nuclear ribonucleoprotein polypeptide N pseudogene pseudo 13-PTNLD9-TUMOR_peak_18618 chr16 15736437 15736627 + 5.30189 NA promoter-TSS (NM_001143979) promoter-TSS (NM_001143979) 491 NM_001184998 9665 Hs.173524 NM_014647 HPRD:13992 KIAA0430 LKAP|MARF1|PPP1R34 KIAA0430 protein-coding 13-PTNLD9-TUMOR_peak_8688 chr10 135451182 135451313 + 5.30160 NA Intergenic CpG -10948 NM_001080998 441581 Hs.690471 NM_001080998 ENSG00000225899 FRG2B - FSHD region gene 2 family, member B protein-coding 13-PTNLD9-TUMOR_peak_49788 chr7 155098871 155099047 + 5.30160 NA intron (NM_198336, intron 5 of 5) intron (NM_198336, intron 5 of 5) 9473 NM_005542 3638 Hs.520819 NM_005542 HPRD:03633 INSIG1 CL-6|CL6 insulin induced gene 1 protein-coding 13-PTNLD9-TUMOR_peak_20676 chr17 21226331 21226465 + 5.30160 NA Intergenic Intergenic 35050 NM_002756 5606 Hs.514012 NM_002756 HPRD:03816 MAP2K3 MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2 mitogen-activated protein kinase kinase 3 protein-coding 13-PTNLD9-TUMOR_peak_40747 chr5 43432497 43432746 + 5.30160 NA Intergenic Intergenic -20133 NM_148672 56477 Hs.656904 NM_019846 CCL28 CCK1|MEC|SCYA28 chemokine (C-C motif) ligand 28 protein-coding 13-PTNLD9-TUMOR_peak_15355 chr14 24505161 24505279 + 5.30160 NA promoter-TSS (NR_102689) promoter-TSS (NR_102689) -401 NR_102691 728635 Hs.647569 NM_001082488 DHRS4L1 SDR25C4 dehydrogenase/reductase (SDR family) member 4 like 1 protein-coding 13-PTNLD9-TUMOR_peak_38861 chr4 89532070 89532216 + 5.30160 NA intron (NM_014606, intron 3 of 25) intron (NM_014606, intron 3 of 25) 18569 NM_014606 8916 Hs.35804 NM_014606 HPRD:16093 HERC3 - HECT and RLD domain containing E3 ubiquitin protein ligase 3 protein-coding 13-PTNLD9-TUMOR_peak_5907 chr1 234675847 234675941 + 5.30154 NA Intergenic Intergenic -8369 NR_038426 100506795 Hs.448989 NR_038426 ENSG00000231768 LINC01354 - long intergenic non-protein coding RNA 1354 ncRNA 13-PTNLD9-TUMOR_peak_35567 chr3 122512929 122513059 + 5.30154 NA promoter-TSS (NM_032839) promoter-TSS (NM_032839) -328 NM_024610 79663 Hs.29169 NM_024610 HPRD:12197 HSPBAP1 PASS1 HSPB (heat shock 27kDa) associated protein 1 protein-coding 13-PTNLD9-TUMOR_peak_20175 chr16 90144192 90144287 + 5.30076 NA Intergenic L1P4a|LINE|L1 -1901 NM_001098173 11105 Hs.406695 NM_052996 HPRD:17903 PRDM7 PFM4|ZNF910 PR domain containing 7 protein-coding 13-PTNLD9-TUMOR_peak_36752 chr3 172366738 172366930 + 5.30076 NA intron (NM_020792, intron 1 of 4) Charlie22a|DNA|hAT-Charlie 62174 NM_001146278 57552 Hs.444099 NM_020792 HPRD:07489 NCEH1 AADACL1|NCEH neutral cholesterol ester hydrolase 1 protein-coding 13-PTNLD9-TUMOR_peak_37483 chr3 197353783 197353904 + 5.29918 NA intron (NR_003266, intron 1 of 7) intron (NR_003266, intron 1 of 7) 909 NR_003266 220729 Hs.478854 NR_003266 ENSG00000214135 LOC220729 - succinate dehydrogenase complex, subunit A, flavoprotein (Fp) pseudogene pseudo 13-PTNLD9-TUMOR_peak_46655 chr7 984866 984960 + 5.29458 NA intron (NM_001284308, intron 1 of 10) intron (NM_001284308, intron 1 of 10) 539 NM_001284309 11033 Hs.602573 NM_006869 HPRD:09733 ADAP1 CENTA1|GCS1L|p42IP4 ArfGAP with dual PH domains 1 protein-coding 13-PTNLD9-TUMOR_peak_42119 chr5 133862864 133863027 + 5.29458 NA intron (NM_015288, intron 1 of 10) CpG-21039 1147 NM_015288 23338 Hs.732155 NM_015288 HPRD:15124 JADE2 JADE-2|PHF15 jade family PHD finger 2 protein-coding 13-PTNLD9-TUMOR_peak_55410 chrUn_gl000226 3127 3429 + 5.29344 NA NA ALR/Alpha|Satellite|centr NA NA 13-PTNLD9-TUMOR_peak_20901 chr17 34746550 34746654 + 5.28911 NA exon (NM_032258, exon 14 of 14).2 exon (NM_032258, exon 14 of 14).2 10391 NM_001291462 101060321 Hs.454716 NM_001291462 LOC101060321 - TBC1 domain family member-like protein-coding 13-PTNLD9-TUMOR_peak_24433 chr19 19029818 19029949 + 5.28837 NA promoter-TSS (NM_019070) promoter-TSS (NM_019070) 316 NM_199442 11316 Hs.10326 NM_007263 HPRD:06089 COPE epsilon-COP coatomer protein complex, subunit epsilon protein-coding 13-PTNLD9-TUMOR_peak_12822 chr12 52637688 52637843 + 5.28837 NA intron (NM_005556, intron 6 of 8) intron (NM_005556, intron 6 of 8) 10811 NM_005556 3855 Hs.411501 NM_005556 HPRD:01014 KRT7 CK7|K2C7|K7|SCL keratin 7 protein-coding 13-PTNLD9-TUMOR_peak_32626 chr22 16200922 16201051 + 5.28724 NA Intergenic Intergenic -7977 NR_122113 503637 Hs.744284 NR_122113 DUXAP8 - double homeobox A pseudogene 8 pseudo 13-PTNLD9-TUMOR_peak_4116 chr1 160990503 160990637 + 5.28245 NA intron (NM_016946, intron 1 of 9) intron (NM_016946, intron 1 of 9) 563 NM_016946 50848 Hs.517293 NM_016946 HPRD:12038 F11R CD321|JAM|JAM1|JAMA|JCAM|KAT|PAM-1 F11 receptor protein-coding 13-PTNLD9-TUMOR_peak_24261 chr19 16190160 16190319 + 5.28171 NA intron (NM_003290, intron 1 of 7) intron (NM_003290, intron 1 of 7) 3104 NM_003290 7171 Hs.631618 NM_003290 HPRD:11734 TPM4 HEL-S-108 tropomyosin 4 protein-coding 13-PTNLD9-TUMOR_peak_24624 chr19 30153620 30153723 + 5.27822 NA Intergenic Intergenic -2656 NM_024310 79156 Hs.466383 NM_024310 HPRD:15146 PLEKHF1 APPD|LAPF|PHAFIN1|ZFYVE15 pleckstrin homology domain containing, family F (with FYVE domain) member 1 protein-coding 13-PTNLD9-TUMOR_peak_38821 chr4 87857079 87857217 + 5.27822 NA intron (NM_001166693, intron 1 of 20) CpG 994 NM_001166693 4299 Hs.480190 NM_005935 HPRD:08871 AFF1 AF4|MLLT2|PBM1 AF4/FMR2 family, member 1 protein-coding 13-PTNLD9-TUMOR_peak_40314 chr5 10563851 10563955 + 5.27786 NA promoter-TSS (NM_001164440) promoter-TSS (NM_001164440) -532 NM_001164440 651746 Hs.26039 NM_001164440 ANKRD33B - ankyrin repeat domain 33B protein-coding 13-PTNLD9-TUMOR_peak_49602 chr7 149758030 149758147 + 5.27786 NA Intergenic Intergenic -187137 NR_027040 401431 Hs.556998 NM_001008745 HPRD:17391 ATP6V0E2-AS1 - ATP6V0E2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_53793 chr9 85843268 85843378 + 5.27786 NA Intergenic L1PA2|LINE|L1 38879 NM_001244962 257019 Hs.127535 NM_174938 HPRD:07402 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_52178 chr8 134552329 134552538 + 5.27656 NA intron (NM_173344, intron 2 of 9) intron (NM_173344, intron 2 of 9) 31750 NM_173344 6482 Hs.374257 NM_003033 HPRD:06219 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_911 chr1 30996041 30996232 + 5.27656 NA Intergenic Intergenic -195483 NR_034182 100129196 Hs.659751 NR_034182 ENSG00000186056 MATN1-AS1 - MATN1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_38757 chr4 84256063 84256313 + 5.27656 NA promoter-TSS (NM_001098540) promoter-TSS (NM_001098540) 118 NM_001166498 10855 Hs.44227 NM_006665 HPRD:05286 HPSE HPA|HPA1|HPR1|HPSE1|HSE1 heparanase protein-coding 13-PTNLD9-TUMOR_peak_9915 chr11 58404991 58405113 + 5.27656 NA Intergenic L2c|LINE|L2 14906 NM_000614 1270 Hs.524920 NM_000614 HPRD:00347 CNTF HCNTF ciliary neurotrophic factor protein-coding 13-PTNLD9-TUMOR_peak_7710 chr10 73768907 73769182 + 5.27656 NA 3' UTR (NM_004273, exon 3 of 3) 3' UTR (NM_004273, exon 3 of 3) 44924 NM_004273 9469 Hs.158304 NM_004273 HPRD:07052 CHST3 C6ST|C6ST1|HSD carbohydrate (chondroitin 6) sulfotransferase 3 protein-coding 13-PTNLD9-TUMOR_peak_16254 chr14 74718374 74718470 + 5.27656 NA intron (NM_182894, intron 3 of 4) intron (NM_182894, intron 3 of 4) 12247 NM_182894 338917 Hs.449771 NM_182894 HPRD:08852 VSX2 CHX10|HOX10|MCOP2|MCOPCB3|RET1 visual system homeobox 2 protein-coding 13-PTNLD9-TUMOR_peak_47794 chr7 68570243 68570455 + 5.27656 NA Intergenic MER41B|LTR|ERV1 492132 NR_108105 100507468 Hs.362492 NR_108105 LOC100507468 - uncharacterized LOC100507468 ncRNA 13-PTNLD9-TUMOR_peak_46631 chr7 372738 372837 + 5.27656 NA Intergenic CpG 42651 NM_001195127 100288524 Hs.702860 NM_001195127 WI2-2373I1.2 - forkhead box L1-like protein-coding 13-PTNLD9-TUMOR_peak_13183 chr12 65950645 65950753 + 5.27656 NA TTS (NR_120434) TTS (NR_120434) 85453 NR_120433 100507065 Hs.591038 NR_120431 ENSG00000250748 LOC100507065 - uncharacterized LOC100507065 ncRNA 13-PTNLD9-TUMOR_peak_14960 chr13 95993941 95994096 + 5.27656 NA Intergenic MER20|DNA|hAT-Charlie -40331 NM_005845 10257 Hs.508423 NM_005845 HPRD:05583 ABCC4 EST170205|MOAT-B|MOATB|MRP4 ATP-binding cassette, sub-family C (CFTR/MRP), member 4 protein-coding 13-PTNLD9-TUMOR_peak_26156 chr2 12309980 12310104 + 5.27656 NA intron (NR_110196, intron 3 of 5) intron (NR_110196, intron 3 of 5) 162800 NR_110196 100506457 Hs.197824 NR_110196 ENSG00000224184 LOC100506457 - uncharacterized LOC100506457 ncRNA 13-PTNLD9-TUMOR_peak_41258 chr5 73109209 73109383 + 5.27656 NA promoter-TSS (NM_001244364) promoter-TSS (NM_001244364) -47 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor (GEF) 28 protein-coding 13-PTNLD9-TUMOR_peak_8170 chr10 102321835 102322022 + 5.27656 NA Intergenic CpG 26287 NM_017902 55662 Hs.500788 NM_017902 HIF1AN FIH1 hypoxia inducible factor 1, alpha subunit inhibitor protein-coding 13-PTNLD9-TUMOR_peak_20655 chr17 20107332 20107545 + 5.27656 NA intron (NM_001033554, intron 1 of 5) MLT1L|LTR|ERVL-MaLR 48131 NM_001033555 92521 Hs.431045 NM_152904 HPRD:12301 SPECC1 CYTSB|HCMOGT-1|HCMOGT1|NSP sperm antigen with calponin homology and coiled-coil domains 1 protein-coding 13-PTNLD9-TUMOR_peak_50655 chr8 38517618 38517755 + 5.27656 NA Intergenic Intergenic -58911 NR_003129 286140 Hs.512071 NR_003129 RNF5P1 - ring finger protein 5, E3 ubiquitin protein ligase pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_17915 chr15 87420477 87420758 + 5.27656 NA intron (NM_152336, intron 22 of 23) intron (NM_152336, intron 22 of 23) -560418 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_46544 chr6 168218446 168218649 + 5.27656 NA Intergenic Intergenic 8929 NR_027906 653483 Hs.520556 NM_001042508 ENSG00000198221 MLLT4-AS1 C6orf124|HGC6.4|dJ431P23.3 MLLT4 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_14323 chr12 131703007 131703244 + 5.27656 NA Intergenic MER70B|LTR|ERVL 53569 NR_026670 116437 Hs.675497 NR_026670 ENSG00000204603 LINC01257 - long intergenic non-protein coding RNA 1257 ncRNA 13-PTNLD9-TUMOR_peak_44014 chr6 18307368 18307462 + 5.27656 NA Intergenic Intergenic -42616 NM_001134709 7913 Hs.484813 NM_003472 HPRD:00503 DEK D6S231E DEK proto-oncogene protein-coding 13-PTNLD9-TUMOR_peak_27272 chr2 73404534 73404671 + 5.27656 NA Intergenic CpG -24784 NM_001134462 344022 Hs.694384 NM_001134462 NOTO - notochord homeobox protein-coding 13-PTNLD9-TUMOR_peak_26562 chr2 36595124 36595218 + 5.27656 NA intron (NM_016441, intron 1 of 16) intron (NM_016441, intron 1 of 16) 11801 NM_016441 51232 Hs.699247 NM_016441 HPRD:08392 CRIM1 CRIM-1|S52 cysteine rich transmembrane BMP regulator 1 (chordin-like) protein-coding 13-PTNLD9-TUMOR_peak_25331 chr19 49291516 49291620 + 5.27656 NA Intergenic Intergenic 22752 NM_001190 587 Hs.512670 NM_001190 HPRD:00217 BCAT2 BCAM|BCATM|BCT2|PP18 branched chain amino-acid transaminase 2, mitochondrial protein-coding 13-PTNLD9-TUMOR_peak_21771 chr17 62619449 62619630 + 5.27656 NA intron (NM_022739, intron 1 of 18) intron (NM_022739, intron 1 of 18) 38847 NM_022739 64750 Hs.515011 NM_022739 SMURF2 - SMAD specific E3 ubiquitin protein ligase 2 protein-coding 13-PTNLD9-TUMOR_peak_56094 chrX 69674733 69674974 + 5.27656 NA promoter-TSS (NM_001166278) promoter-TSS (NM_001166278) -93 NM_001166278 1741 Hs.721586 NM_020730 HPRD:02177 DLG3 MRX|MRX90|NEDLG|PPP1R82|SAP102|XLMR discs, large homolog 3 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_54790 chr9 129609466 129609567 + 5.27656 NA Intergenic Intergenic -13428 NM_001099270 403341 Hs.177633 NM_203482 ENSG00000177125 ZBTB34 ZNF918 zinc finger and BTB domain containing 34 protein-coding 13-PTNLD9-TUMOR_peak_35177 chr3 99440578 99440696 + 5.27656 NA intron (NM_001850, intron 2 of 4) intron (NM_001850, intron 2 of 4) 83197 NM_001850 1295 Hs.654548 NM_001850 HPRD:00372 COL8A1 C3orf7 collagen, type VIII, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_34145 chr3 28787094 28787236 + 5.27656 NA intron (NR_038840, intron 2 of 4) intron (NR_038840, intron 2 of 4) 170396 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 13-PTNLD9-TUMOR_peak_17110 chr15 41551486 41551620 + 5.27656 NA intron (NM_007236, intron 3 of 6) intron (NM_007236, intron 3 of 6) -24648 NR_026757 729082 Hs.380164 NR_026757 OIP5-AS1 cyrano OIP5 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_1236 chr1 39491853 39492109 + 5.27524 NA promoter-TSS (NM_004552) promoter-TSS (NM_004552) 14 NM_001184979 4725 Hs.632385 NM_004552 HPRD:11961 NDUFS5 CI-15k|CI15K NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase) protein-coding 13-PTNLD9-TUMOR_peak_443 chr1 12100759 12100925 + 5.27524 NA Intergenic LTR64|LTR|ERV1 11627 NR_106787 102466982 NR_106787 MIR6729 hsa-mir-6729 microRNA 6729 ncRNA 13-PTNLD9-TUMOR_peak_30560 chr20 19861350 19861444 + 5.27524 NA Intergenic L2b|LINE|L2 -5768 NM_001242581 54453 Hs.472270 NM_018993 HPRD:15249 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 13-PTNLD9-TUMOR_peak_30948 chr20 35724593 35724780 + 5.27524 NA promoter-TSS (NM_002895) promoter-TSS (NM_002895) -283 NM_183404 5933 Hs.207745 NM_002895 HPRD:00312 RBL1 CP107|PRB1|p107 retinoblastoma-like 1 protein-coding 13-PTNLD9-TUMOR_peak_47046 chr7 22766146 22766293 + 5.27524 NA promoter-TSS (NM_000600) promoter-TSS (NM_000600) -547 NM_000600 3569 Hs.654458 NM_000600 HPRD:00970 IL6 BSF2|HGF|HSF|IFNB2|IL-6 interleukin 6 protein-coding 13-PTNLD9-TUMOR_peak_8901 chr11 5498765 5498996 + 5.27524 NA intron (NR_038321, intron 1 of 4) L1HS|LINE|L1 -11035 NM_001005163 390066 Hs.553734 NM_001005163 HPRD:15008 OR52D1 OR11-43 olfactory receptor, family 52, subfamily D, member 1 protein-coding 13-PTNLD9-TUMOR_peak_16119 chr14 69095515 69095609 + 5.27524 NA Intergenic Intergenic 165069 NM_004926 677 Hs.85155 NM_004926 HPRD:03041 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein-like 1 protein-coding 13-PTNLD9-TUMOR_peak_47486 chr7 50966588 50966685 + 5.27524 NA Intergenic L1PA2|LINE|L1 -105477 NM_001001555 2887 Hs.164060 NM_005311 HPRD:03312 GRB10 GRB-IR|Grb-10|IRBP|MEG1|RSS growth factor receptor-bound protein 10 protein-coding 13-PTNLD9-TUMOR_peak_36173 chr3 140473160 140473330 + 5.27524 NA Intergenic LTR16C|LTR|ERVL 76379 NM_152616 287015 Hs.343487 NM_152616 HPRD:15559 TRIM42 PPP1R40 tripartite motif containing 42 protein-coding 13-PTNLD9-TUMOR_peak_53255 chr9 40380523 40380643 + 5.27524 NA Intergenic MIR|SINE|MIR -319708 NM_001083124 727830 Hs.632078 NM_001083124 ENSG00000147926 SPATA31A3 FAM75A3 SPATA31 subfamily A, member 3 protein-coding 13-PTNLD9-TUMOR_peak_1787 chr1 52870495 52870623 + 5.27524 NA promoter-TSS (NM_004153) promoter-TSS (NM_004153) 340 NM_032864 84950 Hs.5301 NM_032284 PRPF38A Prp38 pre-mRNA processing factor 38A protein-coding 13-PTNLD9-TUMOR_peak_37869 chr4 8112165 8112340 + 5.27524 NA intron (NM_001130085, intron 1 of 17) intron (NM_001130085, intron 1 of 17) -38509 NM_001286688 84448 Hs.233404 NM_032432 ENSG00000163995 ABLIM2 - actin binding LIM protein family, member 2 protein-coding 13-PTNLD9-TUMOR_peak_30793 chr20 31866127 31866222 + 5.27524 NA Intergenic Intergenic -4767 NM_033197 92747 Hs.65551 NM_033197 HPRD:12740 BPIFB1 C20orf114|LPLUNC1 BPI fold containing family B, member 1 protein-coding 13-PTNLD9-TUMOR_peak_5436 chr1 220960741 220960849 + 5.27524 NA intron (NM_022746, intron 1 of 6) intron (NM_022746, intron 1 of 6) 756 NM_022746 64757 Hs.497816 NM_022746 HPRD:08653 MARC1 MOSC1 mitochondrial amidoxime reducing component 1 protein-coding 13-PTNLD9-TUMOR_peak_24346 chr19 17889474 17889949 + 5.27497 NA intron (NM_015122, intron 20 of 28) intron (NM_015122, intron 20 of 28) -16208 NM_014256 10331 Hs.69009 NM_014256 HPRD:10431 B3GNT3 B3GAL-T8|B3GN-T3|B3GNT-3|HP10328|TMEM3|beta3Gn-T3 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3 protein-coding 13-PTNLD9-TUMOR_peak_42451 chr5 142783629 142783762 + 5.27497 NA promoter-TSS (NM_001204259) promoter-TSS (NM_001204259) 350 NM_001018076 2908 Hs.122926 NM_000176 HPRD:00679 NR3C1 GCCR|GCR|GR|GRL nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) protein-coding 13-PTNLD9-TUMOR_peak_115 chr1 2126723 2126859 + 5.27497 NA promoter-TSS (NM_001256947) promoter-TSS (NM_001256947) -577 NR_046427 199990 Hs.107101 NM_182533 HPRD:08707 C1orf86 FAAP20|FP7162 chromosome 1 open reading frame 86 protein-coding 13-PTNLD9-TUMOR_peak_25538 chr19 52703467 52703585 + 5.27304 NA intron (NM_014225, intron 1 of 14) intron (NM_014225, intron 1 of 14) 10471 NM_014225 5518 Hs.467192 NM_014225 PPP2R1A PP2A-Aalpha|PP2AAALPHA|PR65A protein phosphatase 2, regulatory subunit A, alpha protein-coding 13-PTNLD9-TUMOR_peak_37273 chr3 193420246 193420358 + 5.27304 NA Intergenic Intergenic -75181 NR_046634 100873941 Hs.679364 NR_046634 ENSG00000224855 OPA1-AS1 - OPA1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_10665 chr11 75479703 75479993 + 5.27304 NA promoter-TSS (NM_032564) promoter-TSS (NM_032564) 70 NM_032564 84649 Hs.129798 NM_032564 HPRD:07376 DGAT2 ARAT|GS1999FULL diacylglycerol O-acyltransferase 2 protein-coding 13-PTNLD9-TUMOR_peak_4021 chr1 158216574 158216686 + 5.27304 NA Intergenic L1MEd|LINE|L1 -7297 NM_001763 909 Hs.1309 NM_001763 HPRD:01776 CD1A CD1|FCB6|HTA1|R4|T6 CD1a molecule protein-coding 13-PTNLD9-TUMOR_peak_571 chr1 17858292 17858474 + 5.27304 NA Intergenic Intergenic -7947 NM_018125 55160 Hs.443460 NM_018125 HPRD:07679 ARHGEF10L GrinchGEF Rho guanine nucleotide exchange factor (GEF) 10-like protein-coding 13-PTNLD9-TUMOR_peak_19463 chr16 57973245 57973342 + 5.27304 NA intron (NM_001297, intron 16 of 32) intron (NM_001297, intron 16 of 32) 31727 NM_001135639 1258 Hs.147062 NM_001297 HPRD:07204 CNGB1 CNCG2|CNCG3L|CNCG4|CNG4|CNGB1B|GAR1|GARP|GARP2|RCNC2|RCNCb|RCNCbeta|RP45 cyclic nucleotide gated channel beta 1 protein-coding 13-PTNLD9-TUMOR_peak_22636 chr18 12328022 12328124 + 5.27304 NA TTS (NM_006796) TTS (NM_006796) 19816 NM_032525 84617 Hs.193491 NM_032525 HPRD:11349 TUBB6 HsT1601|TUBB-5 tubulin, beta 6 class V protein-coding 13-PTNLD9-TUMOR_peak_1508 chr1 44398577 44398694 + 5.27304 NA promoter-TSS (NM_001136215) promoter-TSS (NM_001136215) -357 NM_001136215 9048 Hs.632404 NM_003976 HPRD:04863 ARTN ENOVIN|EVN|NBN artemin protein-coding 13-PTNLD9-TUMOR_peak_37584 chr4 1606732 1606904 + 5.27304 NA Intergenic Intergenic 78900 NM_001013622 152877 Hs.143314 NM_001013622 HPRD:12900 FAM53A DNTNP family with sequence similarity 53, member A protein-coding 13-PTNLD9-TUMOR_peak_14509 chr13 30423902 30424060 + 5.27304 NA 5' UTR (NM_007106, exon 1 of 5) 5' UTR (NM_007106, exon 1 of 5) 839 NM_007106 5412 Hs.145575 NM_007106 HPRD:05275 UBL3 HCG-1|PNSC1 ubiquitin-like 3 protein-coding 13-PTNLD9-TUMOR_peak_13534 chr12 96591833 96591987 + 5.27304 NA intron (NM_005230, intron 1 of 4) intron (NM_005230, intron 1 of 4) 3703 NM_005230 2004 Hs.46523 NM_005230 ELK3 ERP|NET|SAP2 ELK3, ETS-domain protein (SRF accessory protein 2) protein-coding 13-PTNLD9-TUMOR_peak_55874 chrX 52784339 52784501 + 5.27304 NA intron (NM_175698, intron 4 of 7) intron (NM_175698, intron 4 of 7) 4139 NM_001164417 727837 Hs.289105 NM_001164417 ENSG00000157950 SSX2B CT5.2|CT5.2b|HOM-MEL-40|SSX synovial sarcoma, X breakpoint 2B protein-coding 13-PTNLD9-TUMOR_peak_10168 chr11 64571115 64571230 + 5.27304 NA promoter-TSS (NM_004579) promoter-TSS (NM_004579) -459 NM_004579 5871 Hs.534341 NM_004579 HPRD:04408 MAP4K2 BL44|GCK|RAB8IP mitogen-activated protein kinase kinase kinase kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_14228 chr12 125170688 125170815 + 5.27304 NA Intergenic Intergenic -118741 NM_001206654 9612 Hs.137510 NM_006312 HPRD:02910 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 13-PTNLD9-TUMOR_peak_34006 chr3 18175998 18176112 + 5.27304 NA intron (NM_001257177, intron 4 of 4) intron (NM_001257177, intron 4 of 4) 171991 NM_001257177 339862 Hs.652981 NM_001257177 LOC339862 - uncharacterized LOC339862 protein-coding 13-PTNLD9-TUMOR_peak_32796 chr22 20748350 20748817 + 5.27304 NA non-coding (NR_046282, exon 1 of 6) non-coding (NR_046282, exon 1 of 6) 178 NM_001256524 7625 Hs.517418 NM_003426 HPRD:01928 ZNF74 COS52|ZFP520|ZNF520|hZNF7 zinc finger protein 74 protein-coding 13-PTNLD9-TUMOR_peak_36448 chr3 153698020 153698168 + 5.27304 NA Intergenic L1PB1|LINE|L1 -140698 NM_001251962 26084 Hs.240845 NM_015595 HPRD:11554 ARHGEF26 CSGEF|HMFN1864|SGEF Rho guanine nucleotide exchange factor (GEF) 26 protein-coding 13-PTNLD9-TUMOR_peak_40577 chr5 34305916 34306044 + 5.27304 NA Intergenic SVA_F|Other|Other -181347 NR_037951 100534612 Hs.171929 NR_037951 C1QTNF3-AMACR - C1QTNF3-AMACR readthrough (NMD candidate) ncRNA 13-PTNLD9-TUMOR_peak_10887 chr11 90896787 90897006 + 5.27304 NA Intergenic Intergenic -607871 NR_039711 100616186 NR_039711 miRBase:MI0016852 MIR4490 - microRNA 4490 ncRNA 13-PTNLD9-TUMOR_peak_35695 chr3 125518224 125518331 + 5.27304 NA Intergenic LTR5A|LTR|ERVK -8882 NR_031687 100302204 NR_031687 miRBase:MI0006421 MIR548I1 MIR548I-1|MIRN548I1|hsa-mir-548i-1 microRNA 548i-1 ncRNA 13-PTNLD9-TUMOR_peak_54991 chr9 136825659 136825863 + 5.27304 NA intron (NM_003371, intron 1 of 26) intron (NM_003371, intron 1 of 26) 31685 NM_003371 7410 Hs.369921 NM_003371 HPRD:02694 VAV2 VAV-2 vav 2 guanine nucleotide exchange factor protein-coding 13-PTNLD9-TUMOR_peak_48252 chr7 89803495 89803591 + 5.27304 NA intron (NR_110029, intron 2 of 2) AluJr|SINE|Alu 19854 NM_012449 26872 Hs.61635 NM_012449 HPRD:05106 STEAP1 PRSS24|STEAP six transmembrane epithelial antigen of the prostate 1 protein-coding 13-PTNLD9-TUMOR_peak_32915 chr22 23624408 23624627 + 5.25722 NA intron (NM_004327, intron 8 of 22) intron (NM_004327, intron 8 of 22) 19563 NR_033408 26226 Hs.729589 NR_033408 FBXW4P1 FBW3|FBXW3|SHFM3P1 F-box and WD repeat domain containing 4 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_42078 chr5 133339720 133339849 + 5.25483 NA intron (NM_003374, intron 1 of 8) CpG 873 NR_036624 7416 Hs.519320 NM_003374 HPRD:05137 VDAC1 PORIN|VDAC-1 voltage-dependent anion channel 1 protein-coding 13-PTNLD9-TUMOR_peak_22319 chr17 80199550 80199742 + 5.25483 NA TTS (NM_001893) TTS (NM_001893) 5102 NR_106845 102465472 NR_106845 MIR6787 hsa-mir-6787 microRNA 6787 ncRNA 13-PTNLD9-TUMOR_peak_28441 chr2 131129678 131129850 + 5.25471 NA intron (NM_014369, intron 12 of 14) CpG 16184 NM_001142370 26469 Hs.516390 NM_014369 HPRD:05961 PTPN18 BDP1|PTP-HSCF protein tyrosine phosphatase, non-receptor type 18 (brain-derived) protein-coding 13-PTNLD9-TUMOR_peak_46767 chr7 4814607 4814734 + 5.25471 NA promoter-TSS (NM_014855) promoter-TSS (NM_014855) -592 NM_014855 9907 Hs.558440 NM_014855 AP5Z1 KIAA0415|SPG48|zeta adaptor-related protein complex 5, zeta 1 subunit protein-coding 13-PTNLD9-TUMOR_peak_26855 chr2 47402074 47402171 + 5.25471 NA intron (NM_001743, intron 1 of 5) intron (NM_001743, intron 1 of 5) 1618 NM_001743 805 Hs.468442 NM_001743 HPRD:00242 CALM2 CAMII|PHKD|PHKD2 calmodulin 2 (phosphorylase kinase, delta) protein-coding 13-PTNLD9-TUMOR_peak_1150 chr1 36840334 36840490 + 5.25471 NA intron (NM_032017, intron 1 of 11) intron (NM_032017, intron 1 of 11) 11116 NM_001282547 83931 Hs.471768 NM_032017 HPRD:11359 STK40 SHIK|SgK495 serine/threonine kinase 40 protein-coding 13-PTNLD9-TUMOR_peak_27916 chr2 106015419 106015602 + 5.25471 NA promoter-TSS (NM_001039492) promoter-TSS (NM_001039492) 65 NM_001039492 2274 Hs.443687 NM_001450 HPRD:04026 FHL2 AAG11|DRAL|FHL-2|SLIM-3|SLIM3 four and a half LIM domains 2 protein-coding 13-PTNLD9-TUMOR_peak_2139 chr1 68214456 68214587 + 5.24875 NA intron (NM_018841, intron 2 of 3) intron (NM_018841, intron 2 of 3) 63661 NM_001924 1647 Hs.80409 NM_001924 HPRD:00528 GADD45A DDIT1|GADD45 growth arrest and DNA-damage-inducible, alpha protein-coding 13-PTNLD9-TUMOR_peak_35927 chr3 131260245 131260373 + 5.24875 NA intron (NM_001289112, intron 15 of 15) LTR37B|LTR|ERV1 -38449 NM_007208 11222 Hs.205163 NM_007208 HPRD:06175 MRPL3 COXPD9|MRL3|RPML3 mitochondrial ribosomal protein L3 protein-coding 13-PTNLD9-TUMOR_peak_22100 chr17 75118700 75118797 + 5.24875 NA intron (NM_001204410, intron 2 of 17) intron (NM_001204410, intron 2 of 17) -18257 NM_001039573 6397 Hs.464184 NM_003003 HPRD:03295 SEC14L1 PRELID4A|SEC14L SEC14-like 1 (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_50767 chr8 43035989 43036218 + 5.24875 NA intron (NM_152419, intron 10 of 17) SVA_E|Other|Other 40511 NM_152419 138050 Hs.600384 NM_152419 ENSG00000165102 HGSNAT HGNAT|MPS3C|TMEM76 heparan-alpha-glucosaminide N-acetyltransferase protein-coding 13-PTNLD9-TUMOR_peak_18256 chr16 2549098 2549192 + 5.24875 NA intron (NM_020705, intron 3 of 6) intron (NM_020705, intron 3 of 6) -14582 NM_001198569 527 Hs.389107 NM_001694 HPRD:00162 ATP6V0C ATP6C|ATP6L|ATPL|VATL|VPPC|Vma3 ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c protein-coding 13-PTNLD9-TUMOR_peak_30961 chr20 36011856 36011999 + 5.24875 NA intron (NM_005417, intron 3 of 13) L2c|LINE|L2 37396 NM_198291 6714 Hs.195659 NM_005417 HPRD:01819 SRC ASV|SRC1|c-SRC|p60-Src SRC proto-oncogene, non-receptor tyrosine kinase protein-coding 13-PTNLD9-TUMOR_peak_19250 chr16 47006820 47007145 + 5.24875 NA intron (NM_005880, intron 1 of 8) CpG 643 NM_005880 10294 Hs.368078 NM_005880 HPRD:07105 DNAJA2 CPR3|DJ3|DJA2|DNAJ|DNJ3|HIRIP4|PRO3015|RDJ2 DnaJ (Hsp40) homolog, subfamily A, member 2 protein-coding 13-PTNLD9-TUMOR_peak_43950 chr6 16681873 16681982 + 5.24875 NA intron (NM_001128164, intron 2 of 7) intron (NM_001128164, intron 2 of 7) 79794 NM_001128164 6310 Hs.434961 NM_000332 HPRD:03333 ATXN1 ATX1|D6S504E|SCA1 ataxin 1 protein-coding 13-PTNLD9-TUMOR_peak_23047 chr18 43732823 43732927 + 5.24643 NA Intergenic Intergenic -21113 NM_001008239 147339 Hs.116486 NM_145055 HPRD:12690 C18orf25 ARKL1|RNF111L1 chromosome 18 open reading frame 25 protein-coding 13-PTNLD9-TUMOR_peak_55316 chrUn_gl000224 5945 6063 + 5.24403 NA NA ACRO1|Satellite|acro NA NA 13-PTNLD9-TUMOR_peak_52309 chr8 141310019 141310113 + 5.24305 NA intron (NM_031466, intron 11 of 22) intron (NM_031466, intron 11 of 22) 157795 NM_001160372 83696 Hs.654911 NM_031466 HPRD:18136 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|TRS120 trafficking protein particle complex 9 protein-coding 13-PTNLD9-TUMOR_peak_29403 chr2 192731772 192732061 + 5.24305 NA Intergenic Intergenic -19910 NM_004657 8436 Hs.26530 NM_004657 HPRD:09470 SDPR CAVIN2|PS-p68|SDR|cavin-2 serum deprivation response protein-coding 13-PTNLD9-TUMOR_peak_6964 chr10 38186072 38186171 + 5.24305 NA Intergenic L1PA2|LINE|L1 -39109 NM_001267597 57209 Hs.528423 NM_021045 HPRD:15757 ZNF248 bA162G10.3 zinc finger protein 248 protein-coding 13-PTNLD9-TUMOR_peak_5197 chr1 205304848 205304965 + 5.24305 NA TTS (NM_001271864) TTS (NM_001271864) -14023 NM_030952 81788 Hs.497512 NM_030952 HPRD:12172 NUAK2 SNARK NUAK family, SNF1-like kinase, 2 protein-coding 13-PTNLD9-TUMOR_peak_19582 chr16 67338001 67338207 + 5.24305 NA intron (NM_001100915, intron 3 of 15) intron (NM_001100915, intron 3 of 15) 22557 NM_001100915 146212 Hs.299127 NM_001100915 ENSG00000168676 KCTD19 - potassium channel tetramerization domain containing 19 protein-coding 13-PTNLD9-TUMOR_peak_38916 chr4 96172012 96172140 + 5.24305 NA intron (NM_003728, intron 4 of 15) intron (NM_003728, intron 4 of 15) 159434 NM_001256794 658 Hs.598475 NM_001203 HPRD:04457 BMPR1B ALK-6|ALK6|CDw293 bone morphogenetic protein receptor, type IB protein-coding 13-PTNLD9-TUMOR_peak_25075 chr19 43967791 43967942 + 5.24305 NA exon (NM_014400, exon 3 of 5) exon (NM_014400, exon 3 of 5) 1965 NM_014400 27076 Hs.631594 NM_014400 HPRD:10783 LYPD3 C4.4A LY6/PLAUR domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_22224 chr17 78163451 78163688 + 5.24305 NA non-coding (NR_047566, exon 7 of 22) non-coding (NR_047566, exon 7 of 22) 1970 NM_052819 79092 Hs.675480 NM_024110 HPRD:06235 CARD14 BIMP2|CARMA2|PRP|PSORS2|PSS1 caspase recruitment domain family, member 14 protein-coding 13-PTNLD9-TUMOR_peak_32824 chr22 21392097 21392345 + 5.24305 NA Intergenic LTR24|LTR|ERV1 -5374 NM_004173 6545 Hs.197116 NM_004173 HPRD:04780 SLC7A4 CAT-4|CAT4|HCAT3|VH solute carrier family 7, member 4 protein-coding 13-PTNLD9-TUMOR_peak_7882 chr10 82167623 82167823 + 5.24305 NA promoter-TSS (NM_001243780) promoter-TSS (NM_001243780) 138 NM_001243779 84293 Hs.500333 NM_032333 HPRD:12580 FAM213A C10orf58|PAMM family with sequence similarity 213, member A protein-coding 13-PTNLD9-TUMOR_peak_11406 chr11 119404680 119405017 + 5.24305 NA Intergenic Intergenic -110602 NM_006288 7070 Hs.644697 NM_006288 THY1 CD90 Thy-1 cell surface antigen protein-coding 13-PTNLD9-TUMOR_peak_3789 chr1 154492322 154492419 + 5.24305 NA intron (NM_182499, intron 4 of 12) intron (NM_182499, intron 4 of 12) 17675 NM_001098475 126668 Hs.387671 NM_182499 HPRD:13196 TDRD10 - tudor domain containing 10 protein-coding 13-PTNLD9-TUMOR_peak_41484 chr5 88608910 88609137 + 5.24305 NA Intergenic Intergenic -409101 NM_001193347 4208 Hs.649965 NM_002397 HPRD:02809 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 13-PTNLD9-TUMOR_peak_5175 chr1 204893441 204893622 + 5.24305 NA intron (NM_001005388, intron 2 of 29) intron (NM_001005388, intron 2 of 29) -19823 NM_001160331 23114 Hs.13349 NM_015090 HPRD:12372 NFASC NF|NRCAML neurofascin protein-coding 13-PTNLD9-TUMOR_peak_5405 chr1 219348207 219348453 + 5.24305 NA promoter-TSS (NM_001300772) promoter-TSS (NM_001300772) 19 NM_001300772 127018 Hs.657617 NM_138794 HPRD:14335 LYPLAL1 - lysophospholipase-like 1 protein-coding 13-PTNLD9-TUMOR_peak_38279 chr4 48271761 48271862 + 5.24305 NA promoter-TSS (NM_003215) promoter-TSS (NM_003215) 3 NM_003215 7006 Hs.479670 NM_003215 HPRD:02786 TEC PSCTK4 tec protein tyrosine kinase protein-coding 13-PTNLD9-TUMOR_peak_42856 chr5 159672324 159672428 + 5.24305 NA Intergenic AluY|SINE|Alu 15939 NM_001445 2172 Hs.519719 NM_001445 HPRD:02689 FABP6 I-15P|I-BABP|I-BALB|I-BAP|ILBP|ILBP3|ILLBP fatty acid binding protein 6, ileal protein-coding 13-PTNLD9-TUMOR_peak_24477 chr19 19976844 19977066 + 5.24305 NA intron (NM_021047, intron 1 of 3) intron (NM_021047, intron 1 of 3) 241 NM_021047 56242 Hs.301059 NM_021047 ZNF253 BMZF-1|BMZF1|ZNF411 zinc finger protein 253 protein-coding 13-PTNLD9-TUMOR_peak_20921 chr17 35749106 35749269 + 5.24305 NA 3' UTR (NM_173625, exon 7 of 7) 3' UTR (NM_173625, exon 7 of 7) 16202 NM_173625 284099 Hs.439154 NM_173625 HPRD:08262 C17orf78 - chromosome 17 open reading frame 78 protein-coding 13-PTNLD9-TUMOR_peak_10818 chr11 85862658 85862961 + 5.24305 NA Intergenic Intergenic -81886 NM_001206947 8301 Hs.163893 NM_007166 HPRD:04320 PICALM CALM|CLTH|LAP phosphatidylinositol binding clathrin assembly protein protein-coding 13-PTNLD9-TUMOR_peak_20956 chr17 36981848 36981974 + 5.24305 NA promoter-TSS (NR_073428) promoter-TSS (NR_073428) -180 NR_039880 100616416 NR_039880 miRBase:MI0017364 MIR4727 - microRNA 4727 ncRNA 13-PTNLD9-TUMOR_peak_47552 chr7 55801390 55801499 + 5.24305 NA Intergenic LTR51|LTR|ERV1 -29184 NR_003949 360132 Hs.446691 NM_182827 HPRD:16900 FKBP9P1 FKBP9L FK506 binding protein 9 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_23177 chr18 47824359 47824499 + 5.24305 NA Intergenic Intergenic -9737 NM_014593 30827 Hs.180933 NM_014593 HPRD:10852 CXXC1 2410002I16Rik|5830420C16Rik|CFP1|CGBP|HsT2645|PCCX1|PHF18|SPP1|ZCGPC1|hCGBP CXXC finger protein 1 protein-coding 13-PTNLD9-TUMOR_peak_47181 chr7 30954325 30954469 + 5.24305 NA intron (NM_198098, intron 1 of 3) AmnSINE1|SINE|Deu 2982 NM_198098 358 Hs.76152 NM_000385 HPRD:00140 AQP1 AQP-CHIP|CHIP28|CO aquaporin 1 (Colton blood group) protein-coding 13-PTNLD9-TUMOR_peak_2668 chr1 101836848 101836946 + 5.24305 NA Intergenic Intergenic -30446 NR_046482 100873740 NR_046482 ENSG00000207116 RNU6-31P RNU6-31|RNU6-6 RNA, U6 small nuclear 31, pseudogene snRNA 13-PTNLD9-TUMOR_peak_3019 chr1 117539791 117539905 + 5.24305 NA Intergenic Intergenic -4524 NM_004258 9398 Hs.654598 NM_004258 HPRD:05154 CD101 EWI-101|IGSF2|V7 CD101 molecule protein-coding 13-PTNLD9-TUMOR_peak_31547 chr20 51962941 51963115 + 5.24305 NA intron (NM_173485, intron 2 of 2) intron (NM_173485, intron 2 of 2) 161206 NM_001193421 128553 Hs.473117 NM_173485 HPRD:10730 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 13-PTNLD9-TUMOR_peak_19010 chr16 30546256 30546361 + 5.24305 NA promoter-TSS (NM_023931) promoter-TSS (NM_023931) -114 NM_023931 65988 Hs.592032 NM_023931 ZNF747 - zinc finger protein 747 protein-coding 13-PTNLD9-TUMOR_peak_39280 chr4 125042925 125043073 + 5.24305 NA Intergenic Intergenic 347580 NR_027106 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 13-PTNLD9-TUMOR_peak_10607 chr11 73672430 73672528 + 5.24305 NA intron (NM_153614, intron 3 of 7) LTR67B|LTR|ERVL 11115 NM_153614 374407 Hs.567888 NM_153614 HPRD:15573 DNAJB13 RSPH16A|TSARG5|TSARG6 DnaJ (Hsp40) homolog, subfamily B, member 13 protein-coding 13-PTNLD9-TUMOR_peak_39135 chr4 115537303 115537462 + 5.24305 NA intron (NM_001128174, intron 1 of 5) L1P1|LINE|L1 -6141 NM_003360 7368 Hs.144197 NM_003360 HPRD:03186 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 13-PTNLD9-TUMOR_peak_16455 chr14 92363847 92363965 + 5.24305 NA intron (NM_006329, intron 4 of 10) intron (NM_006329, intron 4 of 10) -30026 NM_001128596 123036 Hs.510262 NM_152332 HPRD:11375 TC2N C14orf47|C2CD1|MTAC2D1|Tac2-N tandem C2 domains, nuclear protein-coding 13-PTNLD9-TUMOR_peak_11855 chr12 3472023 3472134 + 5.24305 NA Intergenic Intergenic -18437 NM_001256536 56341 Hs.504530 NM_019854 HPRD:11029 PRMT8 HRMT1L3|HRMT1L4 protein arginine methyltransferase 8 protein-coding 13-PTNLD9-TUMOR_peak_49979 chr8 6264069 6264195 + 5.24305 NA promoter-TSS (NR_040040) promoter-TSS (NR_040040) 19 NM_024596 79648 Hs.656769 NM_024596 HPRD:06174 MCPH1 BRIT1|MCT microcephalin 1 protein-coding 13-PTNLD9-TUMOR_peak_26129 chr2 11272870 11272965 + 5.24305 NA promoter-TSS (NM_182500) promoter-TSS (NM_182500) -262 NM_182500 130813 Hs.406894 NM_182500 HPRD:08051 C2orf50 - chromosome 2 open reading frame 50 protein-coding 13-PTNLD9-TUMOR_peak_29697 chr2 209040109 209040220 + 5.24305 NA intron (NM_001099334, intron 6 of 8) intron (NM_001099334, intron 6 of 8) -11867 NM_014617 1418 Hs.122566 NM_014617 HPRD:00433 CRYGA CRY-g-A|CRYG1|CRYG5 crystallin, gamma A protein-coding 13-PTNLD9-TUMOR_peak_49460 chr7 142581444 142581584 + 5.24028 NA intron (NM_018646, intron 1 of 14) intron (NM_018646, intron 1 of 14) 1976 NM_018646 55503 Hs.302740 NM_014274 HPRD:05982 TRPV6 ABP/ZF|CAT1|CATL|ECAC2|HSA277909|LP6728|ZFAB transient receptor potential cation channel, subfamily V, member 6 protein-coding 13-PTNLD9-TUMOR_peak_22790 chr18 21408581 21408688 + 5.23633 NA intron (NM_198129, intron 23 of 74) intron (NM_198129, intron 23 of 74) -44350 NM_001127718 3909 Hs.436367 NM_000227 HPRD:02883 LAMA3 BM600|E170|LAMNA|LOCS|lama3a laminin, alpha 3 protein-coding 13-PTNLD9-TUMOR_peak_1557 chr1 45251974 45252245 + 5.23633 NA intron (NM_153274, intron 3 of 8) CpG 1317 NM_153274 266675 Hs.302513 NM_153274 HPRD:09549 BEST4 VMD2L2 bestrophin 4 protein-coding 13-PTNLD9-TUMOR_peak_19879 chr16 81434816 81434971 + 5.23580 NA Intergenic Intergenic 16270 NR_039871 100616150 NR_039871 miRBase:MI0017355 MIR4720 - microRNA 4720 ncRNA 13-PTNLD9-TUMOR_peak_30716 chr20 30062258 30062430 + 5.23580 NA promoter-TSS (NM_014012) promoter-TSS (NM_014012) -747 NM_014012 28954 Hs.247729 NM_014012 HPRD:15237 REM1 GD:REM|GES RAS (RAD and GEM)-like GTP-binding 1 protein-coding 13-PTNLD9-TUMOR_peak_11964 chr12 6444934 6445028 + 5.23169 NA intron (NM_001065, intron 1 of 9) intron (NM_001065, intron 1 of 9) 6302 NM_001065 7132 Hs.279594 NM_001065 HPRD:01861 TNFRSF1A CD120a|FPF|MS5|TBP1|TNF-R|TNF-R-I|TNF-R55|TNFAR|TNFR1|TNFR1-d2|TNFR55|TNFR60|p55|p55-R|p60 tumor necrosis factor receptor superfamily, member 1A protein-coding 13-PTNLD9-TUMOR_peak_212 chr1 6672797 6672966 + 5.23160 NA promoter-TSS (NM_153812) promoter-TSS (NM_153812) -875 NM_153812 148479 Hs.516079 NM_153812 HPRD:10150 PHF13 PHF5|SPOC1 PHD finger protein 13 protein-coding 13-PTNLD9-TUMOR_peak_25363 chr19 49707439 49707595 + 5.23160 NA intron (NM_001195227, intron 19 of 23) L1MB4|LINE|L1 46501 NM_017636 54795 Hs.467101 NM_017636 HPRD:09502 TRPM4 PFHB1B|TRPM4B transient receptor potential cation channel, subfamily M, member 4 protein-coding 13-PTNLD9-TUMOR_peak_11630 chr11 129575260 129575356 + 5.23160 NA Intergenic Intergenic -88144 NR_120582 101929557 Hs.385785 NR_120582 LINC01395 - long intergenic non-protein coding RNA 1395 ncRNA 13-PTNLD9-TUMOR_peak_23824 chr19 7993759 7993979 + 5.22536 NA intron (NM_006351, intron 10 of 12) intron (NM_006351, intron 10 of 12) -2818 NM_206833 404217 Hs.657978 NM_206833 HPRD:13097 CTXN1 CTXN cortexin 1 protein-coding 13-PTNLD9-TUMOR_peak_9369 chr11 27489819 27490042 + 5.22505 NA intron (NM_018490, intron 1 of 17) intron (NM_018490, intron 1 of 17) 4404 NM_018490 55366 Hs.502176 NM_018490 HPRD:05978 LGR4 BNMD17|GPR48 leucine-rich repeat containing G protein-coupled receptor 4 protein-coding 13-PTNLD9-TUMOR_peak_56151 chrX 73756984 73757118 + 5.22299 NA Intergenic Intergenic 77410 NM_183353 51132 Hs.653288 NM_016120 HPRD:02304 RLIM NY-REN-43|RNF12 ring finger protein, LIM domain interacting protein-coding 13-PTNLD9-TUMOR_peak_23674 chr19 2818481 2818594 + 5.22299 NA Intergenic Intergenic -1335 NM_001102651 115196 Hs.307043 NM_152303 ZNF554 - zinc finger protein 554 protein-coding 13-PTNLD9-TUMOR_peak_20873 chr17 33569469 33569574 + 5.22299 NA promoter-TSS (NM_144975) promoter-TSS (NM_144975) -565 NM_144975 162394 Hs.709347 NM_144975 SLFN5 - schlafen family member 5 protein-coding 13-PTNLD9-TUMOR_peak_5310 chr1 207494411 207494553 + 5.22299 NA promoter-TSS (NM_000574) promoter-TSS (NM_000574) -335 NM_000574 1604 Hs.126517 NM_000574 HPRD:00500 CD55 CR|CROM|DAF|TC CD55 molecule, decay accelerating factor for complement (Cromer blood group) protein-coding 13-PTNLD9-TUMOR_peak_1812 chr1 53792226 53792446 + 5.21571 NA intron (NM_001018054, intron 2 of 17) CpG 1485 NM_004631 7804 Hs.280387 NM_004631 LRP8 APOER2|HSZ75190|LRP-8|MCI1 low density lipoprotein receptor-related protein 8, apolipoprotein e receptor protein-coding 13-PTNLD9-TUMOR_peak_44813 chr6 36547617 36547808 + 5.21464 NA Intergenic Intergenic -14378 NR_036610 6428 Hs.405144 NM_003017 SRSF3 SFRS3|SRp20 serine/arginine-rich splicing factor 3 protein-coding 13-PTNLD9-TUMOR_peak_49386 chr7 140311575 140311748 + 5.21464 NA Intergenic L1MB7|LINE|L1 -9319 NM_015689 27147 Hs.6385 NM_015689 HPRD:17210 DENND2A FAM31D|KIAA1277 DENN/MADD domain containing 2A protein-coding 13-PTNLD9-TUMOR_peak_39489 chr4 142255102 142255264 + 5.21464 NA Intergenic Intergenic -1412 NR_121625 100507639 Hs.535010 NR_121625 ENSG00000248810 LOC100507639 - uncharacterized LOC100507639 ncRNA 13-PTNLD9-TUMOR_peak_29175 chr2 177043359 177043637 + 5.21464 NA promoter-TSS (NR_110458) promoter-TSS (NR_110458) 604 NR_110457 102800310 Hs.599655 NR_110457 HAGLROS - HAGLR opposite strand (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_16369 chr14 81440401 81440495 + 5.21407 NA intron (NM_001018036, intron 1 of 8) intron (NM_001018036, intron 1 of 8) 18579 NM_000369 7253 Hs.160411 NM_000369 HPRD:04537 TSHR CHNG1|LGR3|hTSHR-I thyroid stimulating hormone receptor protein-coding 13-PTNLD9-TUMOR_peak_19637 chr16 68670895 68670997 + 5.21407 NA Intergenic MIRc|SINE|MIR -7205 NM_001793 1001 Hs.191842 NM_001793 HPRD:00227 CDH3 CDHP|HJMD|PCAD cadherin 3, type 1, P-cadherin (placental) protein-coding 13-PTNLD9-TUMOR_peak_43786 chr6 11609736 11609890 + 5.21407 NA Intergenic Intergenic 71353 NM_001100829 100113407 Hs.146317 NM_001100829 ENSG00000205269 TMEM170B - transmembrane protein 170B protein-coding 13-PTNLD9-TUMOR_peak_42819 chr5 158764662 158764824 + 5.21407 NA intron (NR_037889, intron 2 of 4) LTR8A|LTR|ERV1 6217 NR_037889 285626 Hs.449275 NR_037889 ENSG00000249738 LOC285626 - uncharacterized LOC285626 ncRNA 13-PTNLD9-TUMOR_peak_18446 chr16 9170340 9170487 + 5.21407 NA Intergenic AluJr|SINE|Alu -15124 NM_014117 29035 Hs.221497 NM_014117 C16orf72 PRO0149 chromosome 16 open reading frame 72 protein-coding 13-PTNLD9-TUMOR_peak_33205 chr22 36877546 36877805 + 5.21407 NA promoter-TSS (NM_012473) promoter-TSS (NM_012473) 12 NM_012473 25828 Hs.211929 NM_012473 HPRD:07161 TXN2 MT-TRX|MTRX|TRX2 thioredoxin 2 protein-coding 13-PTNLD9-TUMOR_peak_11470 chr11 122674895 122675134 + 5.21407 NA intron (NM_032873, intron 11 of 13) intron (NM_032873, intron 11 of 13) -34241 NM_019604 56253 Hs.159523 NM_019604 HPRD:16760 CRTAM CD355 cytotoxic and regulatory T cell molecule protein-coding 13-PTNLD9-TUMOR_peak_44126 chr6 24490269 24490392 + 5.21407 NA promoter-TSS (NM_001503) promoter-TSS (NM_001503) -480 NM_001503 2822 Hs.533291 NM_001503 HPRD:03946 GPLD1 GPIPLD|GPIPLDM|PIGPLD|PIGPLD1|PLD glycosylphosphatidylinositol specific phospholipase D1 protein-coding 13-PTNLD9-TUMOR_peak_18336 chr16 3930881 3930999 + 5.21407 NA promoter-TSS (NM_001079846) promoter-TSS (NM_001079846) -819 NM_004380 1387 Hs.459759 NM_004380 HPRD:02534 CREBBP CBP|KAT3A|RSTS CREB binding protein protein-coding 13-PTNLD9-TUMOR_peak_46643 chr7 852583 852721 + 5.21058 NA Intergenic Intergenic -2542 NM_001171946 23353 Hs.438072 NM_025154 HPRD:16257 SUN1 UNC84A Sad1 and UNC84 domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_28679 chr2 149085867 149085979 + 5.21002 NA intron (NM_018328, intron 4 of 14) L1PA3|LINE|L1 -306750 NM_181742 5000 Hs.558364 NM_002552 HPRD:09118 ORC4 ORC4L|ORC4P origin recognition complex, subunit 4 protein-coding 13-PTNLD9-TUMOR_peak_13970 chr12 117846012 117846106 + 5.21002 NA Intergenic MamRep4096|DNA|hAT? -46452 NM_001204218 4842 Hs.654410 NM_000620 HPRD:01226 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 (neuronal) protein-coding 13-PTNLD9-TUMOR_peak_11597 chr11 128377071 128377165 + 5.21002 NA intron (NM_001143820, intron 3 of 9) intron (NM_001143820, intron 3 of 9) 15087 NM_005238 2113 Hs.369438 NM_005238 HPRD:01260 ETS1 ETS-1|EWSR2|p54 v-ets avian erythroblastosis virus E26 oncogene homolog 1 protein-coding 13-PTNLD9-TUMOR_peak_50497 chr8 29356954 29357168 + 5.21002 NA Intergenic Intergenic -148794 NM_001394 1846 Hs.417962 NM_001394 HPRD:04123 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 13-PTNLD9-TUMOR_peak_50056 chr8 9885815 9885993 + 5.21002 NA Intergenic MER41B|LTR|ERV1 -25875 NM_012331 4482 Hs.490981 NM_012331 HPRD:03152 MSRA PMSR methionine sulfoxide reductase A protein-coding 13-PTNLD9-TUMOR_peak_52116 chr8 132647443 132647567 + 5.21002 NA Intergenic L1PA3|LINE|L1 -268851 NM_015137 23167 Hs.204564 NM_015137 HPRD:17179 EFR3A - EFR3 homolog A (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_30030 chr2 233470686 233470815 + 5.21002 NA promoter-TSS (NM_001243252) promoter-TSS (NM_001243252) -17 NM_001243252 80303 Hs.516769 NM_025202 HPRD:13265 EFHD1 MST133|MSTP133|SWS2 EF-hand domain family, member D1 protein-coding 13-PTNLD9-TUMOR_peak_42663 chr5 150394600 150394718 + 5.21002 NA Intergenic MER68|LTR|ERVL -5340 NM_002084 2878 Hs.386793 NM_002084 HPRD:11750 GPX3 GPx-P|GSHPx-3|GSHPx-P glutathione peroxidase 3 (plasma) protein-coding 13-PTNLD9-TUMOR_peak_11456 chr11 122499794 122499888 + 5.21002 NA Intergenic Intergenic -26557 NM_032873 84959 Hs.444075 NM_032873 HPRD:16463 UBASH3B STS-1|STS1|TULA-2|p70 ubiquitin associated and SH3 domain containing B protein-coding 13-PTNLD9-TUMOR_peak_17625 chr15 74035424 74035615 + 5.21002 NA intron (NM_001039614, intron 1 of 1) intron (NM_001039614, intron 1 of 1) 8297 NM_001039614 388135 Hs.40794 NM_001039614 ENSG00000205363 C15orf59 - chromosome 15 open reading frame 59 protein-coding 13-PTNLD9-TUMOR_peak_28219 chr2 119711846 119711992 + 5.21002 NA intron (NM_006770, intron 1 of 16) L1PB1|LINE|L1 12174 NM_006770 8685 Hs.67726 NM_006770 HPRD:05337 MARCO SCARA2 macrophage receptor with collagenous structure protein-coding 13-PTNLD9-TUMOR_peak_1403 chr1 42612685 42612779 + 5.21002 NA Intergenic Intergenic -6360 NM_007102 2981 Hs.32966 NM_007102 HPRD:03170 GUCA2B GCAP-II|UGN guanylate cyclase activator 2B (uroguanylin) protein-coding 13-PTNLD9-TUMOR_peak_42937 chr5 168713704 168713798 + 5.21002 NA intron (NM_003062, intron 1 of 35) intron (NM_003062, intron 1 of 35) 14382 NM_001271946 6586 Hs.552087 NM_003062 HPRD:04775 SLIT3 MEGF5|SLIL2|SLIT1|Slit-3|slit2 slit homolog 3 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_4347 chr1 168994188 168994351 + 5.21002 NA intron (NR_104091, intron 3 of 4) MLT1G3|LTR|ERVL-MaLR 61974 NR_104091 101978719 Hs.517849 NR_104091 LINC00970 - long intergenic non-protein coding RNA 970 ncRNA 13-PTNLD9-TUMOR_peak_24003 chr19 11472151 11472374 + 5.21002 NA intron (NM_022737, intron 6 of 9) CpG 6200 NM_022737 64748 Hs.6846 NM_022737 HPRD:17442 LPPR2 PRG4 lipid phosphate phosphatase-related protein type 2 protein-coding 13-PTNLD9-TUMOR_peak_23563 chr19 70719 70854 + 5.20867 NA intron (NR_033266, intron 1 of 2) CpG 180 NR_033266 375690 Hs.521961 NR_033266 WASH5P - WAS protein family homolog 5 pseudogene pseudo 13-PTNLD9-TUMOR_peak_15321 chr14 23527375 23527539 + 5.20867 NA promoter-TSS (NM_022478) promoter-TSS (NM_022478) -710 NM_022478 64403 Hs.155912 NM_022478 HPRD:13019 CDH24 CDH11L cadherin 24, type 2 protein-coding 13-PTNLD9-TUMOR_peak_53883 chr9 90183021 90183146 + 5.20867 NA intron (NM_001288729, intron 2 of 25) MER102c|DNA|hAT-Charlie 69633 NM_001288729 1612 Hs.380277 NM_004938 HPRD:02902 DAPK1 DAPK death-associated protein kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_29285 chr2 183902766 183902915 + 5.20867 NA 5' UTR (NM_205842, exon 1 of 32) 5' UTR (NM_205842, exon 1 of 32) 746 NM_205842 10787 Hs.603732 NM_013436 HPRD:05353 NCKAP1 HEM2|NAP1|NAP125|p125Nap1 NCK-associated protein 1 protein-coding 13-PTNLD9-TUMOR_peak_27532 chr2 88315300 88315713 + 5.20867 NA Intergenic Intergenic -30197 NM_001024457 400966 Hs.728970 NM_001024457 ENSG00000187627 RGPD1 RGP1|RGPD2|RanBP2L2 RANBP2-like and GRIP domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_43927 chr6 16016164 16016295 + 5.20867 NA Intergenic L1PA3|LINE|L1 -113088 NM_013262 29116 Hs.484738 NM_013262 HPRD:17621 MYLIP IDOL|MIR myosin regulatory light chain interacting protein protein-coding 13-PTNLD9-TUMOR_peak_17821 chr15 83127846 83128041 + 5.19817 NA intron (NR_111962, intron 7 of 10) intron (NR_111962, intron 7 of 10) 29233 NM_198181 440295 Hs.498322 NM_198181 HPRD:11262 GOLGA6L9 GOLGA6L20 golgin A6 family-like 9 protein-coding 13-PTNLD9-TUMOR_peak_37935 chr4 9125266 9125531 + 5.19736 NA Intergenic HERVK-int|LTR|ERVK -86985 NM_001256852 100287144 Hs.741130 NM_001256852 ENSG00000231396 USP17L10 - ubiquitin specific peptidase 17-like family member 10 protein-coding 13-PTNLD9-TUMOR_peak_5286 chr1 206730464 206730623 + 5.19736 NA promoter-TSS (NM_182665) promoter-TSS (NM_182665) 51 NM_182665 83593 Hs.497579 NM_031437 HPRD:06117 RASSF5 Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3 Ras association (RalGDS/AF-6) domain family member 5 protein-coding 13-PTNLD9-TUMOR_peak_21075 chr17 40264095 40264241 + 5.19736 NA TTS (NM_021078) TTS (NM_021078) 583 NM_024119 79132 Hs.55918 NM_024119 HPRD:13115 DHX58 D11LGP2|D11lgp2e|LGP2|RLR-3 DEXH (Asp-Glu-X-His) box polypeptide 58 protein-coding 13-PTNLD9-TUMOR_peak_38411 chr4 53690999 53691139 + 5.19736 NA Intergenic Intergenic 34908 NR_040106 152578 Hs.383806 NR_040106 ENSG00000250302 LOC152578 - uncharacterized LOC152578 ncRNA 13-PTNLD9-TUMOR_peak_40246 chr5 7851158 7851305 + 5.19736 NA 5' UTR (NM_001089584, exon 1 of 3) 5' UTR (NM_001089584, exon 1 of 3) 372 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 13-PTNLD9-TUMOR_peak_19986 chr16 85525770 85525914 + 5.19736 NA Intergenic Intergenic -119187 NM_001134473 23199 Hs.461647 NM_014615 HPRD:11066 GSE1 KIAA0182 Gse1 coiled-coil protein protein-coding 13-PTNLD9-TUMOR_peak_33857 chr3 13713234 13713331 + 5.19736 NA intron (NR_027103, intron 1 of 5) intron (NR_027103, intron 1 of 5) 21061 NR_027103 285375 Hs.319969 NR_027103 ENSG00000224514 LINC00620 - long intergenic non-protein coding RNA 620 ncRNA 13-PTNLD9-TUMOR_peak_7271 chr10 48185510 48185954 + 5.19736 NA promoter-TSS (NR_024495).2 promoter-TSS (NR_024495).2 -107 NR_024495 642826 Hs.463017 NR_024495 BMS1P6 BMS1LP2|BMS1LP6|BMS1P2|bA302K17.2 BMS1 pseudogene 6 pseudo 13-PTNLD9-TUMOR_peak_15752 chr14 52118599 52118969 + 5.19736 NA promoter-TSS (NR_037676) promoter-TSS (NR_037676) 208 NM_152330 122786 Hs.434914 NM_152330 HPRD:12646 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 13-PTNLD9-TUMOR_peak_21044 chr17 39705099 39705359 + 5.19692 NA TTS (NR_038442) TTS (NR_038442) 5518 NR_038442 147093 Hs.680576 NR_038442 ENSG00000226629 LINC00974 - long intergenic non-protein coding RNA 974 ncRNA 13-PTNLD9-TUMOR_peak_520 chr1 16472175 16472361 + 5.19692 NA intron (NM_004431, intron 3 of 16) intron (NM_004431, intron 3 of 16) 10314 NM_004431 1969 Hs.171596 NM_004431 HPRD:01494 EPHA2 ARCC2|CTPA|CTPP1|CTRCT6|ECK EPH receptor A2 protein-coding 13-PTNLD9-TUMOR_peak_46872 chr7 7604074 7604233 + 5.19401 NA intron (NR_110084, intron 1 of 4) L2a|LINE|L2 1543 NR_110084 101927391 Hs.223837 NR_110084 LOC101927391 - uncharacterized LOC101927391 ncRNA 13-PTNLD9-TUMOR_peak_11660 chr11 130290536 130290727 + 5.19401 NA intron (NM_007037, intron 1 of 8) intron (NM_007037, intron 1 of 8) 7908 NM_007037 11095 Hs.271605 NM_007037 HPRD:05531 ADAMTS8 ADAM-TS8|METH2 ADAM metallopeptidase with thrombospondin type 1 motif, 8 protein-coding 13-PTNLD9-TUMOR_peak_34542 chr3 49466709 49466833 + 5.18504 NA promoter-TSS (NM_032316) promoter-TSS (NM_032316) -14 NM_032316 84276 Hs.191460 NM_032316 HPRD:17631 NICN1 - nicolin 1 protein-coding 13-PTNLD9-TUMOR_peak_20251 chr17 2296624 2296928 + 5.18504 NA intron (NM_020310, intron 4 of 5) CpG 7482 NM_020310 4335 Hs.626579 NM_020310 HPRD:04331 MNT MAD6|MXD6|ROX|bHLHd3 MAX network transcriptional repressor protein-coding 13-PTNLD9-TUMOR_peak_18529 chr16 11721932 11722127 + 5.18504 NA Intergenic Intergenic -40260 NM_003498 8303 Hs.618526 NM_003498 HPRD:04327 SNN - stannin protein-coding 13-PTNLD9-TUMOR_peak_6059 chr1 240784633 240784764 + 5.18504 NA Intergenic Intergenic -9236 NM_022469 64388 Hs.98206 NM_022469 HPRD:16390 GREM2 CKTSF1B2|DAND3|PRDC gremlin 2, DAN family BMP antagonist protein-coding 13-PTNLD9-TUMOR_peak_8276 chr10 105880613 105880817 + 5.18504 NA Intergenic Intergenic -1101 NM_145247 119392 Hs.93667 NM_145247 HPRD:12590 SFR1 C10orf78|MEI5|MEIR5|bA373N18.1 SWI5-dependent recombination repair 1 protein-coding 13-PTNLD9-TUMOR_peak_49551 chr7 148469819 148469941 + 5.18504 NA intron (NM_003592, intron 9 of 21) MER117|DNA|hAT-Charlie 73947 NM_003592 8454 Hs.146806 NM_003592 HPRD:04389 CUL1 - cullin 1 protein-coding 13-PTNLD9-TUMOR_peak_51624 chr8 113094934 113095163 + 5.18504 NA Intergenic LTR12C|LTR|ERV1 -560674 NR_031745 100302225 NR_031745 miRBase:MI0010487 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 13-PTNLD9-TUMOR_peak_31950 chr21 15853980 15854144 + 5.18504 NA Intergenic Intergenic 64619 NM_001286523 64092 Hs.473341 NM_022136 HPRD:06413 SAMSN1 HACS1|NASH1|SASH2|SH3D6B|SLy2 SAM domain, SH3 domain and nuclear localization signals 1 protein-coding 13-PTNLD9-TUMOR_peak_5753 chr1 229206032 229206200 + 5.18504 NA Intergenic Intergenic -200693 NM_001271998 5867 Hs.296169 NM_004578 HPRD:01541 RAB4A HRES-1|HRES-1/RAB4|HRES1|RAB4 RAB4A, member RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_6876 chr10 32344617 32344711 + 5.18504 NA intron (NM_004521, intron 1 of 25) CpG 707 NM_004521 3799 Hs.327736 NM_004521 HPRD:07214 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 13-PTNLD9-TUMOR_peak_51679 chr8 117950971 117951082 + 5.18504 NA intron (NM_001025357, intron 1 of 1) intron (NM_001025357, intron 1 of 1) 562 NM_001025357 441376 Hs.437551 NM_001025357 AARD C8orf85 alanine and arginine rich domain containing protein protein-coding 13-PTNLD9-TUMOR_peak_2106 chr1 66797856 66798099 + 5.18504 NA 5' UTR (NM_001037339, exon 1 of 10) 5' UTR (NM_001037339, exon 1 of 10) 186 NM_001037339 5142 Hs.198072 NM_002600 HPRD:02528 PDE4B DPDE4|PDEIVB phosphodiesterase 4B, cAMP-specific protein-coding 13-PTNLD9-TUMOR_peak_28191 chr2 118381286 118381409 + 5.18504 NA Intergenic L1PA3|LINE|L1 -190908 NM_006773 8886 Hs.744922 NM_006773 HPRD:05894 DDX18 MrDb DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 protein-coding 13-PTNLD9-TUMOR_peak_17798 chr15 82751260 82751455 + 5.18162 NA intron (NM_001164465, intron 8 of 9) intron (NM_001164465, intron 8 of 9) 28369 NM_001291420 440295 Hs.498322 NM_198181 HPRD:11262 GOLGA6L9 GOLGA6L20 golgin A6 family-like 9 protein-coding 13-PTNLD9-TUMOR_peak_3940 chr1 156460444 156460590 + 5.17723 NA promoter-TSS (NM_001271629) promoter-TSS (NM_001271629) -126 NM_001271629 4209 Hs.314327 NM_005920 HPRD:02810 MEF2D - myocyte enhancer factor 2D protein-coding 13-PTNLD9-TUMOR_peak_4678 chr1 182809062 182809161 + 5.17723 NA intron (NR_033302, intron 1 of 28) CpG 672 NR_033302 1660 Hs.191518 NM_001357 HPRD:04386 DHX9 DDX9|LKP|NDH2|NDHII|RHA DEAH (Asp-Glu-Ala-His) box helicase 9 protein-coding 13-PTNLD9-TUMOR_peak_43609 chr6 5125646 5125800 + 5.17692 NA intron (NR_104417, intron 2 of 3) intron (NR_104417, intron 2 of 3) 22833 NR_037462 100500900 NR_037462 MIR3691 - microRNA 3691 ncRNA 13-PTNLD9-TUMOR_peak_26358 chr2 26525889 26525983 + 5.17692 NA Intergenic HERV15-int|LTR|ERV1 15981 NM_001145168 165082 Hs.631878 NM_153835 HPRD:11009 GPR113 PGR23|hGPCR37 G protein-coupled receptor 113 protein-coding 13-PTNLD9-TUMOR_peak_54564 chr9 117967593 117967687 + 5.17692 NA intron (NM_017418, intron 1 of 7) intron (NM_017418, intron 1 of 7) 63543 NM_017418 50514 Hs.148841 NM_017418 HPRD:16068 DEC1 CTS9 deleted in esophageal cancer 1 protein-coding 13-PTNLD9-TUMOR_peak_14531 chr13 31004472 31004588 + 5.17692 NA Intergenic Intergenic -8149 NR_125771 103724387 NR_125771 LINC01058 - long intergenic non-protein coding RNA 1058 ncRNA 13-PTNLD9-TUMOR_peak_10509 chr11 71199260 71199355 + 5.17692 NA intron (NM_018161, intron 16 of 20) L2a|LINE|L2 14758 NR_106812 102466728 NR_106812 MIR6754 hsa-mir-6754 microRNA 6754 ncRNA 13-PTNLD9-TUMOR_peak_18829 chr16 24991853 24992013 + 5.17692 NA intron (NM_001006634, intron 1 of 19) intron (NM_001006634, intron 1 of 19) 34766 NM_018054 55114 Hs.373793 NM_018054 HPRD:12207 ARHGAP17 MST066|MST110|MSTP038|MSTP066|MSTP110|NADRIN|PP367|PP4534|RICH-1|RICH1|WBP15 Rho GTPase activating protein 17 protein-coding 13-PTNLD9-TUMOR_peak_7519 chr10 64873902 64873996 + 5.17692 NA Intergenic Intergenic -19058 NM_001282405 29982 Hs.449628 NM_030759 HPRD:11401 NRBF2 COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 13-PTNLD9-TUMOR_peak_43175 chr5 176389187 176389281 + 5.17692 NA intron (NM_016290, intron 6 of 14) SVA_F|Other|Other 44209 NM_016290 51720 Hs.232721 NM_016290 HPRD:11482 UIMC1 RAP80|X2HRIP110 ubiquitin interaction motif containing 1 protein-coding 13-PTNLD9-TUMOR_peak_15599 chr14 39583654 39583748 + 5.17692 NA intron (NM_003616, intron 1 of 9) CpG 213 NM_001009183 8487 Hs.652307 NM_003616 HPRD:03999 GEMIN2 SIP1|SIP1-delta gem (nuclear organelle) associated protein 2 protein-coding 13-PTNLD9-TUMOR_peak_45992 chr6 123110582 123110883 + 5.17692 NA intron (NM_001286138, intron 1 of 6) CpG 538 NM_006714 10924 Hs.486357 NM_006714 HPRD:10244 SMPDL3A ASM3A|ASML3a|yR36GH4.1 sphingomyelin phosphodiesterase, acid-like 3A protein-coding 13-PTNLD9-TUMOR_peak_30038 chr2 234075000 234075107 + 5.17692 NA intron (NM_001017915, intron 12 of 25) intron (NM_001017915, intron 12 of 25) -85164 NM_001190266 55054 Hs.529322 NM_017974 HPRD:16498 ATG16L1 APG16L|ATG16A|ATG16L|IBD10|WDR30 autophagy related 16-like 1 (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_16522 chr14 97066819 97066913 + 5.17692 NA Intergenic Intergenic 97664 NM_001293628 10914 Hs.253726 NM_032632 HPRD:10407 PAPOLA PAP poly(A) polymerase alpha protein-coding 13-PTNLD9-TUMOR_peak_11500 chr11 123940103 123940313 + 5.17692 NA Intergenic LTR1|LTR|ERV1 -30500 NM_001004463 390265 Hs.553761 NM_001004463 HPRD:14890 OR10G7 OR11-283 olfactory receptor, family 10, subfamily G, member 7 protein-coding 13-PTNLD9-TUMOR_peak_40290 chr5 10267713 10267901 + 5.17692 NA Intergenic AluJo|SINE|Alu 17525 NM_012073 22948 Hs.1600 NM_012073 HPRD:06468 CCT5 CCT-epsilon|CCTE|HEL-S-69|TCP-1-epsilon chaperonin containing TCP1, subunit 5 (epsilon) protein-coding 13-PTNLD9-TUMOR_peak_49950 chr8 1911429 1911716 + 5.17692 NA Intergenic Intergenic -10472 NM_014867 9920 Hs.5333 NM_014867 HPRD:17195 KBTBD11 KLHDC7C kelch repeat and BTB (POZ) domain containing 11 protein-coding 13-PTNLD9-TUMOR_peak_52111 chr8 132192989 132193156 + 5.17692 NA Intergenic Intergenic -140237 NM_001115 114 Hs.591859 NM_001115 HPRD:00051 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 (brain) protein-coding 13-PTNLD9-TUMOR_peak_14403 chr13 21643827 21644060 + 5.17692 NA Intergenic Intergenic -8221 NM_014572 26524 Hs.78960 NM_014572 HPRD:07277 LATS2 KPM large tumor suppressor kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_1164 chr1 37169440 37169551 + 5.17692 NA Intergenic Intergenic -220580 NM_156039 1441 Hs.524517 NM_000760 HPRD:00737 CSF3R CD114|GCSFR colony stimulating factor 3 receptor (granulocyte) protein-coding 13-PTNLD9-TUMOR_peak_4254 chr1 165373268 165373380 + 5.17692 NA intron (NM_001256571, intron 8 of 8) intron (NM_001256571, intron 8 of 8) 20897 NM_001256571 6258 Hs.26550 NM_006917 HPRD:01579 RXRG NR2B3|RXRC retinoid X receptor, gamma protein-coding 13-PTNLD9-TUMOR_peak_26418 chr2 27994422 27994588 + 5.17692 NA promoter-TSS (NM_004891) promoter-TSS (NM_004891) -79 NM_004891 9553 Hs.515879 NM_004891 HPRD:14753 MRPL33 C2orf1|L33mt|MRP-L33|RPL33L mitochondrial ribosomal protein L33 protein-coding 13-PTNLD9-TUMOR_peak_10379 chr11 67636073 67636223 + 5.17315 NA Intergenic LTR5_Hs|LTR|ERVK -63341 NR_024249 645332 Hs.535094 NR_024249 ENSG00000160172 FAM86C2P - family with sequence similarity 86, member A pseudogene pseudo 13-PTNLD9-TUMOR_peak_11658 chr11 130283385 130283554 + 5.17315 NA intron (NM_007037, intron 5 of 8) intron (NM_007037, intron 5 of 8) 15070 NM_007037 11095 Hs.271605 NM_007037 HPRD:05531 ADAMTS8 ADAM-TS8|METH2 ADAM metallopeptidase with thrombospondin type 1 motif, 8 protein-coding 13-PTNLD9-TUMOR_peak_22157 chr17 76338202 76338358 + 5.17315 NA Intergenic CpG 17880 NM_003955 9021 Hs.527973 NM_003955 HPRD:05006 SOCS3 ATOD4|CIS3|Cish3|SOCS-3|SSI-3|SSI3 suppressor of cytokine signaling 3 protein-coding 13-PTNLD9-TUMOR_peak_55687 chrX 30910862 30910973 + 5.17210 NA Intergenic LTR78B|LTR|ERV1 -3406 NM_152787 257397 Hs.188256 NM_152787 HPRD:06738 TAB3 MAP3K7IP3|NAP1 TGF-beta activated kinase 1/MAP3K7 binding protein 3 protein-coding 13-PTNLD9-TUMOR_peak_46728 chr7 2860255 2860436 + 5.17210 NA intron (NM_001293092, intron 1 of 2) intron (NM_001293092, intron 1 of 2) -5452 NM_001282441 2768 Hs.487341 NM_007353 HPRD:05093 GNA12 NNX3|RMP|gep guanine nucleotide binding protein (G protein) alpha 12 protein-coding 13-PTNLD9-TUMOR_peak_1933 chr1 59011779 59012003 + 5.17210 NA intron (NM_145243, intron 1 of 8) intron (NM_145243, intron 1 of 8) 555 NM_145243 115209 Hs.425769 NM_145243 HPRD:14879 OMA1 2010001O09Rik|DAB1|MPRP-1|YKR087C|ZMPOMA1|peptidase OMA1 zinc metallopeptidase protein-coding 13-PTNLD9-TUMOR_peak_43234 chr5 177557445 177557653 + 5.17210 NA promoter-TSS (NM_001288794) promoter-TSS (NM_001288794) -413 NM_022762 64777 Hs.27222 NM_022762 HPRD:07985 RMND5B GID2|GID2B required for meiotic nuclear division 5 homolog B (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_32340 chr21 40378695 40378881 + 5.17210 NA Intergenic Intergenic -29088 NR_109962 101928435 Hs.385528 NR_109962 ENSG00000232837 LOC101928435 - uncharacterized LOC101928435 ncRNA 13-PTNLD9-TUMOR_peak_25114 chr19 45242198 45242595 + 5.17210 NA Intergenic MIRb|SINE|MIR -9582 NM_005178 602 Hs.31210 NM_005178 HPRD:00179 BCL3 BCL4|D19S37 B-cell CLL/lymphoma 3 protein-coding 13-PTNLD9-TUMOR_peak_25494 chr19 51523134 51523404 + 5.16673 NA promoter-TSS (NM_002776) promoter-TSS (NM_002776) 13 NM_002776 5655 Hs.275464 NM_002776 HPRD:04054 KLK10 NES1|PRSSL1 kallikrein-related peptidase 10 protein-coding 13-PTNLD9-TUMOR_peak_5061 chr1 203121127 203121231 + 5.16315 NA intron (NM_001048230, intron 2 of 2) intron (NM_001048230, intron 2 of 2) 23763 NM_004997 4608 Hs.927 NM_004997 HPRD:01186 MYBPH - myosin binding protein H protein-coding 13-PTNLD9-TUMOR_peak_54661 chr9 124051669 124051930 + 5.16315 NA intron (NM_001258030, intron 1 of 16) intron (NM_001258030, intron 1 of 16) 2941 NM_001258030 2934 Hs.522373 NM_000177 HPRD:00674 GSN ADF|AGEL gelsolin protein-coding 13-PTNLD9-TUMOR_peak_25350 chr19 49521163 49521392 + 5.16203 NA promoter-TSS (NM_000894) promoter-TSS (NM_000894) -930 NM_000894 3972 Hs.154704 NM_000894 HPRD:01072 LHB CGB4|LSH-B|hLHB luteinizing hormone beta polypeptide protein-coding 13-PTNLD9-TUMOR_peak_31672 chr20 56016195 56016348 + 5.16203 NA Intergenic Intergenic 49817 NM_001291780 55544 Hs.236361 NM_017495 HPRD:15268 RBM38 HSRNASEB|RNPC1|SEB4B|SEB4D|dJ800J21.2 RNA binding motif protein 38 protein-coding 13-PTNLD9-TUMOR_peak_38773 chr4 84773292 84773514 + 5.16203 NA Intergenic Intergenic 315933 NM_032717 84803 Hs.99196 NM_032717 HPRD:14417 AGPAT9 AGPAT 10|AGPAT8|GPAT3|LPAAT-theta|MAG1 1-acylglycerol-3-phosphate O-acyltransferase 9 protein-coding 13-PTNLD9-TUMOR_peak_27466 chr2 86223530 86223624 + 5.16203 NA Intergenic Intergenic 27414 NR_026984 90784 Hs.594051 NR_026984 LOC90784 - uncharacterized LOC90784 ncRNA 13-PTNLD9-TUMOR_peak_53804 chr9 86322581 86322783 + 5.16203 NA 5' UTR (NM_013438, exon 1 of 11) 5' UTR (NM_013438, exon 1 of 11) 486 NM_013438 29979 Hs.9589 NM_013438 HPRD:05440 UBQLN1 DA41|DSK2|PLIC-1|UBQN|XDRP1 ubiquilin 1 protein-coding 13-PTNLD9-TUMOR_peak_16816 chr15 25200095 25200222 + 5.16203 NA promoter-TSS (NM_003097) promoter-TSS (NM_003097) 23 NM_003097 6638 Hs.555970 NM_003097 HPRD:01653 SNRPN HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N small nuclear ribonucleoprotein polypeptide N protein-coding 13-PTNLD9-TUMOR_peak_20459 chr17 9131875 9131969 + 5.15659 NA intron (NM_004822, intron 6 of 6) intron (NM_004822, intron 6 of 6) -49487 NR_110828 101928266 Hs.639880 NR_110828 ENSG00000262966 LOC101928266 - uncharacterized LOC101928266 ncRNA 13-PTNLD9-TUMOR_peak_46666 chr7 1084426 1084613 + 5.15659 NA intron (NM_001134395, intron 2 of 4) CpG -12622 NM_138445 115330 Hs.585007 NM_138445 HPRD:17064 GPR146 PGR8 G protein-coupled receptor 146 protein-coding 13-PTNLD9-TUMOR_peak_14275 chr12 126732610 126732729 + 5.15659 NA Intergenic L1MA9|LINE|L1 152131 NR_110053 101927464 Hs.443932 NR_110053 ENSG00000256342 LOC101927464 - uncharacterized LOC101927464 ncRNA 13-PTNLD9-TUMOR_peak_12394 chr12 27707894 27708055 + 5.15659 NA intron (NM_001198915, intron 1 of 26) intron (NM_001198915, intron 1 of 26) 30929 NM_001198916 8496 Hs.172445 NM_003622 HPRD:04390 PPFIBP1 L2|SGT2|hSGT2|hSgt2p PTPRF interacting protein, binding protein 1 (liprin beta 1) protein-coding 13-PTNLD9-TUMOR_peak_49707 chr7 152011245 152011482 + 5.15659 NA intron (NM_170606, intron 4 of 58) intron (NM_170606, intron 4 of 58) 121727 NM_170606 58508 Hs.647120 NM_021230 HPRD:06016 KMT2C HALR|MLL3 lysine (K)-specific methyltransferase 2C protein-coding 13-PTNLD9-TUMOR_peak_31552 chr20 52065533 52065732 + 5.15659 NA intron (NM_173485, intron 2 of 2) intron (NM_173485, intron 2 of 2) -103677 NR_110051 101927770 NR_110051 ENSG00000197670 LOC101927770 - uncharacterized LOC101927770 ncRNA 13-PTNLD9-TUMOR_peak_38736 chr4 83698431 83698722 + 5.15659 NA intron (NM_001037582, intron 1 of 4) intron (NM_001037582, intron 1 of 4) 21434 NM_024906 79966 Hs.379191 NM_024906 HPRD:09756 SCD5 ACOD4|FADS4|HSCD5|SCD2|SCD4 stearoyl-CoA desaturase 5 protein-coding 13-PTNLD9-TUMOR_peak_55573 chrX 15692846 15693125 + 5.15659 NA promoter-TSS (NR_026551) promoter-TSS (NR_026551) -54 NR_026551 340591 Hs.732244 NR_026551 ENSG00000186312 CA5BP1 CA5BL|CA5BP|PRO2325 carbonic anhydrase VB pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_51608 chr8 110986445 110986588 + 5.14614 NA exon (NM_014379, exon 1 of 3) exon (NM_014379, exon 1 of 3) 443 NM_014379 27012 Hs.13285 NM_014379 HPRD:16293 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium channel, subfamily V, member 1 protein-coding 13-PTNLD9-TUMOR_peak_41998 chr5 130500302 130500500 + 5.14614 NA intron (NR_024610, intron 1 of 3) CpG 640 NR_073488 3094 Hs.483305 NM_005340 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_21993 chr17 73444489 73444668 + 5.14614 NA Intergenic Intergenic -8086 NM_014738 9772 Hs.514474 NM_014738 HPRD:11068 KIAA0195 TMEM94 KIAA0195 protein-coding 13-PTNLD9-TUMOR_peak_31670 chr20 56008115 56008251 + 5.14614 NA Intergenic Intergenic 41729 NM_001291780 55544 Hs.236361 NM_017495 HPRD:15268 RBM38 HSRNASEB|RNPC1|SEB4B|SEB4D|dJ800J21.2 RNA binding motif protein 38 protein-coding 13-PTNLD9-TUMOR_peak_12930 chr12 54694655 54694750 + 5.14431 NA 5' UTR (NM_001136023, exon 1 of 3) 5' UTR (NM_001136023, exon 1 of 3) 119 NM_001136023 4778 Hs.75643 NM_006163 HPRD:09030 NFE2 NF-E2|p45 nuclear factor, erythroid 2 protein-coding 13-PTNLD9-TUMOR_peak_22793 chr18 21543874 21543987 + 5.14431 NA Intergenic Intergenic -28807 NM_153211 125488 Hs.128576 NM_153211 HPRD:08745 TTC39C C18orf17|HsT2697 tetratricopeptide repeat domain 39C protein-coding 13-PTNLD9-TUMOR_peak_47970 chr7 74460636 74460730 + 5.14431 NA intron (NM_030798, intron 10 of 10) intron (NM_030798, intron 10 of 10) 29034 NM_001281441 81554 Hs.529623 NM_030798 HPRD:15654 WBSCR16 - Williams-Beuren syndrome chromosome region 16 protein-coding 13-PTNLD9-TUMOR_peak_16475 chr14 93474813 93474907 + 5.14431 NA intron (NM_001142593, intron 4 of 10) intron (NM_001142593, intron 4 of 10) -58937 NR_002808 319085 Hs.612888 NR_002808 ENSG00000258730 ITPK1-AS1 C14orf85|ITPK1-AS|ITPK1AS|NCRNA00203 ITPK1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_33462 chr22 46805185 46805279 + 5.14431 NA intron (NM_014246, intron 8 of 34) intron (NM_014246, intron 8 of 34) 73934 NM_001282783 55687 Hs.439524 NM_018006 HPRD:15571 TRMU MTO2|MTU1|TRMT|TRMT1|TRNT1 tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase protein-coding 13-PTNLD9-TUMOR_peak_28057 chr2 112038342 112038553 + 5.14431 NA Intergenic Intergenic 40216 NR_039636 100616341 NR_039636 miRBase:MI0016777 MIR4435-2 - microRNA 4435-2 ncRNA 13-PTNLD9-TUMOR_peak_21184 chr17 42994444 42994538 + 5.14431 NA Intergenic Intergenic -1571 NM_001242376 2670 Hs.514227 NM_002055 HPRD:00675 GFAP - glial fibrillary acidic protein protein-coding 13-PTNLD9-TUMOR_peak_13610 chr12 103086170 103086264 + 5.14431 NA Intergenic Intergenic 131960 NR_033855 283432 Hs.382110 NR_033855 ENSG00000258169 LINC00485 - long intergenic non-protein coding RNA 485 ncRNA 13-PTNLD9-TUMOR_peak_45496 chr6 73742453 73742583 + 5.14431 NA intron (NM_001160133, intron 2 of 14) intron (NM_001160133, intron 2 of 14) -65042 NR_036244 100423005 NR_036244 miRBase:MI0015890 MIR4282 - microRNA 4282 ncRNA 13-PTNLD9-TUMOR_peak_34936 chr3 71478001 71478171 + 5.14431 NA intron (NM_001012505, intron 3 of 6) intron (NM_001012505, intron 3 of 6) 113154 NR_031697 100302112 NR_031697 miRBase:MI0006431 MIR1284 MIRN1284|hsa-mir-1284 microRNA 1284 ncRNA 13-PTNLD9-TUMOR_peak_30364 chr20 5931167 5931335 + 5.14431 NA promoter-TSS (NM_015939) promoter-TSS (NM_015939) -47 NM_015939 51605 Hs.128791 NM_015939 HPRD:13027 TRMT6 GCD10|Gcd10p tRNA methyltransferase 6 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_26803 chr2 46325027 46325121 + 5.14431 NA intron (NM_005400, intron 11 of 14) intron (NM_005400, intron 11 of 14) -199467 NM_001430 2034 Hs.468410 NM_001430 HPRD:06787 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 13-PTNLD9-TUMOR_peak_29985 chr2 231480411 231480512 + 5.14431 NA Intergenic Intergenic 84783 NR_040038 151475 Hs.528154 NR_040038 ENSG00000226125 LOC151475 - uncharacterized LOC151475 ncRNA 13-PTNLD9-TUMOR_peak_30514 chr20 17854782 17854973 + 5.14431 NA Intergenic Intergenic 88712 NR_003045 692086 Hs.680747 NR_003045 SNORD17 HBI-43 small nucleolar RNA, C/D box 17 snoRNA 13-PTNLD9-TUMOR_peak_50714 chr8 41649834 41649928 + 5.14431 NA intron (NM_001142446, intron 1 of 42) intron (NM_001142446, intron 1 of 42) 5259 NM_020475 286 Hs.654438 NM_000037 HPRD:01693 ANK1 ANK|SPH1|SPH2 ankyrin 1, erythrocytic protein-coding 13-PTNLD9-TUMOR_peak_40856 chr5 53655972 53656217 + 5.14431 NA Intergenic Intergenic -49691 NM_019087 54622 Hs.659125 NM_019087 HPRD:12471 ARL15 ARFRP2 ADP-ribosylation factor-like 15 protein-coding 13-PTNLD9-TUMOR_peak_40021 chr4 186317096 186317255 + 5.13969 NA promoter-TSS (NM_181726) promoter-TSS (NM_181726) -665 NM_181726 353322 Hs.508154 NM_181726 HPRD:17461 ANKRD37 Lrp2bp ankyrin repeat domain 37 protein-coding 13-PTNLD9-TUMOR_peak_4797 chr1 187041594 187041701 + 5.13945 NA Intergenic AluY|SINE|Alu 243615 NM_024420 5321 Hs.497200 NM_024420 HPRD:08986 PLA2G4A PLA2G4|cPLA2-alpha phospholipase A2, group IVA (cytosolic, calcium-dependent) protein-coding 13-PTNLD9-TUMOR_peak_14484 chr13 28194317 28194554 + 5.13945 NA promoter-TSS (NM_001206559) promoter-TSS (NM_001206559) 285 NM_153371 222484 Hs.132359 NM_153371 HPRD:10042 LNX2 PDZRN1 ligand of numb-protein X 2 protein-coding 13-PTNLD9-TUMOR_peak_24868 chr19 38424846 38424971 + 5.13945 NA intron (NM_015073, intron 1 of 21) intron (NM_015073, intron 1 of 21) 27047 NM_015073 23094 Hs.655502 NM_015073 HPRD:18755 SIPA1L3 SPAL3 signal-induced proliferation-associated 1 like 3 protein-coding 13-PTNLD9-TUMOR_peak_37595 chr4 1779641 1780063 + 5.13945 NA Intergenic Intergenic -15187 NM_000142 2261 Hs.1420 NM_000142 HPRD:00624 FGFR3 ACH|CD333|CEK2|HSFGFR3EX|JTK4 fibroblast growth factor receptor 3 protein-coding 13-PTNLD9-TUMOR_peak_24019 chr19 11804757 11804944 + 5.13945 NA Intergenic THE1D|LTR|ERVL-MaLR 20037 NR_028594 401898 Hs.672384 NM_001013691 ZNF833P ZNF833 zinc finger protein 833, pseudogene pseudo 13-PTNLD9-TUMOR_peak_36553 chr3 158450680 158450919 + 5.13945 NA promoter-TSS (NM_002888) promoter-TSS (NM_002888) -524 NM_206963 5918 Hs.131269 NM_002888 HPRD:05477 RARRES1 LXNL|TIG1 retinoic acid receptor responder (tazarotene induced) 1 protein-coding 13-PTNLD9-TUMOR_peak_26494 chr2 30558407 30558532 + 5.13945 NA Intergenic Intergenic -11043 NR_122048 285043 Hs.429119 NR_122048 LOC285043 - uncharacterized LOC285043 ncRNA 13-PTNLD9-TUMOR_peak_22631 chr18 12288871 12289088 + 5.13945 NA Intergenic Intergenic -19278 NM_032525 84617 Hs.193491 NM_032525 HPRD:11349 TUBB6 HsT1601|TUBB-5 tubulin, beta 6 class V protein-coding 13-PTNLD9-TUMOR_peak_3937 chr1 156426768 156426883 + 5.13792 NA Intergenic CpG -27641 NM_006365 10485 Hs.380027 NM_006365 HPRD:09899 C1orf61 CROC4 chromosome 1 open reading frame 61 protein-coding 13-PTNLD9-TUMOR_peak_21301 chr17 45357841 45358065 + 5.13129 NA intron (NM_000212, intron 2 of 14) AluSz|SINE|Alu 26745 NM_000212 3690 Hs.218040 NM_000212 HPRD:01428 ITGB3 BDPLT16|BDPLT2|CD61|GP3A|GPIIIa|GT integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61) protein-coding 13-PTNLD9-TUMOR_peak_3627 chr1 151554686 151554781 + 5.13129 NA 3' UTR (NM_020127, exon 13 of 13) 3' UTR (NM_020127, exon 13 of 13) -29929 NM_030918 81609 Hs.192326 NM_030918 HPRD:11591 SNX27 MRT1|MY014 sorting nexin family member 27 protein-coding 13-PTNLD9-TUMOR_peak_35014 chr3 75483530 75483712 + 5.12970 NA intron (NR_024241, intron 1 of 7) intron (NR_024241, intron 1 of 7) 645 NR_024241 692099 Hs.591652 NR_024241 ENSG00000244026 FAM86DP FAM86D family with sequence similarity 86, member D, pseudogene pseudo 13-PTNLD9-TUMOR_peak_20930 chr17 36294354 36294451 + 5.12945 NA exon (NM_001123391, exon 14 of 14) exon (NM_001123391, exon 14 of 14) 10383 NM_001291466 102723859 Hs.454716 NM_001291466 LOC102723859 - TBC1 domain family member-like protein-coding 13-PTNLD9-TUMOR_peak_47204 chr7 32997384 32997504 + 5.12813 NA intron (NM_007270, intron 1 of 9) CpG 428 NM_001284341 11328 Hs.103934 NM_007270 HPRD:06510 FKBP9 FKBP60|FKBP63|PPIase FK506 binding protein 9, 63 kDa protein-coding 13-PTNLD9-TUMOR_peak_24225 chr19 15391245 15391448 + 5.12813 NA promoter-TSS (NM_058243) promoter-TSS (NM_058243) -84 NM_058243 23476 Hs.187763 NM_014299 HPRD:10574 BRD4 CAP|HUNK1|HUNKI|MCAP bromodomain containing 4 protein-coding 13-PTNLD9-TUMOR_peak_12082 chr12 8488682 8488827 + 5.12813 NA Intergenic Intergenic 54594 NR_024420 389634 Hs.434403 NM_001012988 HPRD:18395 LINC00937 - long intergenic non-protein coding RNA 937 ncRNA 13-PTNLD9-TUMOR_peak_44433 chr6 30122555 30122766 + 5.12813 NA intron (NM_052828, intron 6 of 7).5 intron (NM_052828, intron 6 of 7).5 6051 NM_006778 10107 Hs.709483 NM_006778 HPRD:05752 TRIM10 HERF1|RFB30|RNF9 tripartite motif containing 10 protein-coding 13-PTNLD9-TUMOR_peak_50331 chr8 23081987 23082082 + 5.12813 NA promoter-TSS (NR_033928) promoter-TSS (NR_033928) 646 NM_003844 8797 Hs.213467 NM_003844 TNFRSF10A APO2|CD261|DR4|TRAILR-1|TRAILR1 tumor necrosis factor receptor superfamily, member 10a protein-coding 13-PTNLD9-TUMOR_peak_4570 chr1 179006319 179006474 + 5.12813 NA intron (NM_014864, intron 1 of 7) intron (NM_014864, intron 1 of 7) 11322 NM_014864 9917 Hs.5737 NM_014864 HPRD:13297 FAM20B gxk1 family with sequence similarity 20, member B protein-coding 13-PTNLD9-TUMOR_peak_26811 chr2 46553540 46553635 + 5.12813 NA intron (NM_001430, intron 1 of 15) intron (NM_001430, intron 1 of 15) 29046 NM_001430 2034 Hs.468410 NM_001430 HPRD:06787 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 13-PTNLD9-TUMOR_peak_31099 chr20 41820727 41820828 + 5.12813 NA Intergenic L2c|LINE|L2 -2220 NM_133170 11122 Hs.526879 NM_007050 HPRD:06690 PTPRT RPTPrho protein tyrosine phosphatase, receptor type, T protein-coding 13-PTNLD9-TUMOR_peak_31805 chr20 62111185 62111479 + 5.12813 NA Intergenic CpG -7339 NM_172108 3785 Hs.161851 NM_004518 HPRD:03757 KCNQ2 BFNC|BFNS1|EBN|EBN1|EIEE7|ENB1|HNSPC|KCNA11|KV7.2|KVEBN1 potassium voltage-gated channel, KQT-like subfamily, member 2 protein-coding 13-PTNLD9-TUMOR_peak_28317 chr2 122468091 122468206 + 5.12813 NA intron (NR_037857, intron 3 of 3) intron (NR_037857, intron 3 of 3) 26355 NM_032390 84365 Hs.367842 NM_032390 HPRD:17576 NIFK MKI67IP|Nopp34 nucleolar protein interacting with the FHA domain of MKI67 protein-coding 13-PTNLD9-TUMOR_peak_29822 chr2 219081748 219081916 + 5.12813 NA promoter-TSS (NM_152862) promoter-TSS (NM_152862) 15 NM_152862 10109 Hs.529303 NM_005731 HPRD:10367 ARPC2 ARC34|PNAS-139|p34-Arc actin related protein 2/3 complex, subunit 2, 34kDa protein-coding 13-PTNLD9-TUMOR_peak_51764 chr8 121135871 121136123 + 5.12813 NA Intergenic CpG -1350 NM_021110 7373 Hs.409662 NM_021110 HPRD:00379 COL14A1 UND collagen, type XIV, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_21497 chr17 49029420 49029676 + 5.12178 NA Intergenic Intergenic -84209 NM_001243877 10140 Hs.703321 NM_005749 HPRD:09273 TOB1 APRO6|PIG49|TOB|TROB|TROB1 transducer of ERBB2, 1 protein-coding 13-PTNLD9-TUMOR_peak_28398 chr2 129062764 129062894 + 5.12097 NA intron (NM_004807, intron 1 of 1) intron (NM_004807, intron 1 of 1) 13342 NM_004807 9394 Hs.512841 NM_004807 HPRD:07274 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_21927 chr17 72209498 72209601 + 5.12097 NA promoter-TSS (NM_032646) promoter-TSS (NM_032646) -89 NR_026914 85001 Hs.706954 NM_032915 ENSG00000246731 MGC16275 - uncharacterized protein MGC16275 ncRNA 13-PTNLD9-TUMOR_peak_11663 chr11 130398265 130398443 + 5.12097 NA Intergenic Intergenic 79485 NM_139055 170689 Hs.534221 NM_139055 HPRD:06330 ADAMTS15 - ADAM metallopeptidase with thrombospondin type 1 motif, 15 protein-coding 13-PTNLD9-TUMOR_peak_10577 chr11 72951667 72951764 + 5.12097 NA 3' UTR (NM_176072, exon 3 of 3) 3' UTR (NM_176072, exon 3 of 3) 22213 NM_176071 5029 Hs.339 NM_002564 HPRD:02499 P2RY2 HP2U|P2RU1|P2U|P2U1|P2UR|P2Y2|P2Y2R purinergic receptor P2Y, G-protein coupled, 2 protein-coding 13-PTNLD9-TUMOR_peak_45897 chr6 111280108 111280202 + 5.12097 NA intron (NM_138408, intron 1 of 5) CpG 392 NM_138408 112495 Hs.418520 NM_138408 HPRD:12886 GTF3C6 C6orf51|TFIIIC35|bA397G5.3 general transcription factor IIIC, polypeptide 6, alpha 35kDa protein-coding 13-PTNLD9-TUMOR_peak_17460 chr15 65588655 65589081 + 5.12097 NA Intergenic Intergenic -9850 NM_017851 54956 Hs.30634 NM_017851 HPRD:07919 PARP16 ARTD15|C15orf30|pART15 poly (ADP-ribose) polymerase family, member 16 protein-coding 13-PTNLD9-TUMOR_peak_32770 chr22 20068596 20068834 + 5.12097 NA intron (NM_001190326, intron 1 of 12) intron (NM_001190326, intron 1 of 12) 960 NM_001190326 54487 Hs.643452 NM_022720 HPRD:09913 DGCR8 C22orf12|DGCRK6|Gy1|pasha DGCR8 microprocessor complex subunit protein-coding 13-PTNLD9-TUMOR_peak_35889 chr3 129862658 129862752 + 5.12097 NA Intergenic HERVE-int|LTR|ERV1 -32429 NR_024252 729375 Hs.123633 NR_024252 FAM86HP - family with sequence similarity 86, member A pseudogene pseudo 13-PTNLD9-TUMOR_peak_39035 chr4 108746805 108746928 + 5.12022 NA intron (NM_001136258, intron 1 of 6) intron (NM_001136258, intron 1 of 6) 1145 NM_001136258 166929 Hs.595423 NM_152621 HPRD:11323 SGMS2 SMS2 sphingomyelin synthase 2 protein-coding 13-PTNLD9-TUMOR_peak_24146 chr19 13958529 13958727 + 5.11745 NA Intergenic Intergenic -11155 NR_029495 407010 NR_029495 miRBase:MI0000079 MIR23A MIRN23A|hsa-mir-23a|miRNA23A microRNA 23a ncRNA 13-PTNLD9-TUMOR_peak_30669 chr20 25565915 25566200 + 5.11180 NA promoter-TSS (NM_025176) promoter-TSS (NM_025176) 96 NM_025176 22981 Hs.631508 NM_025176 HPRD:11120 NINL NLP|dJ691N24.1 ninein-like protein-coding 13-PTNLD9-TUMOR_peak_11435 chr11 121228661 121228776 + 5.11180 NA Intergenic MIRb|SINE|MIR 65141 NM_001024956 6309 Hs.287749 NM_006918 SC5D ERG3|S5DES|SC5DL sterol-C5-desaturase protein-coding 13-PTNLD9-TUMOR_peak_10495 chr11 70851669 70851786 + 5.11180 NA intron (NM_012309, intron 2 of 22) intron (NM_012309, intron 2 of 22) 84115 NM_012309 22941 Hs.268726 NM_012309 HPRD:04479 SHANK2 AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 SH3 and multiple ankyrin repeat domains 2 protein-coding 13-PTNLD9-TUMOR_peak_19291 chr16 49683108 49683314 + 5.11180 NA intron (NM_015069, intron 3 of 7) MIR3|SINE|MIR 173438 NM_015069 23090 Hs.530930 NM_015069 HPRD:05189 ZNF423 Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104 zinc finger protein 423 protein-coding 13-PTNLD9-TUMOR_peak_16023 chr14 65133637 65133885 + 5.11180 NA Intergenic Intergenic -37432 NM_015549 26030 Hs.509637 NM_015549 HPRD:17861 PLEKHG3 ARHGEF43|KIAA0599 pleckstrin homology domain containing, family G (with RhoGef domain) member 3 protein-coding 13-PTNLD9-TUMOR_peak_1604 chr1 46347405 46347526 + 5.11180 NA intron (NM_015112, intron 3 of 28) intron (NM_015112, intron 3 of 28) 78180 NM_015112 23139 Hs.319481 NM_015112 HPRD:11294 MAST2 MAST205|MTSSK microtubule associated serine/threonine kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_30259 chr20 1373628 1373722 + 5.11180 NA promoter-TSS (NR_106929) promoter-TSS (NR_106929) -70 NR_106929 102465524 NR_106929 MIR6869 hsa-mir-6869 microRNA 6869 ncRNA 13-PTNLD9-TUMOR_peak_43762 chr6 11116512 11116606 + 5.11180 NA intron (NM_001135575, intron 1 of 1) MLT1E1|LTR|ERVL-MaLR -4488 NM_207582 405754 Hs.631996 NM_207582 HPRD:13648 ERVFRD-1 ERVFRDE1|GLLL6191|HERV-FRD|HERV-W/FRD|UNQ6191|envFRD endogenous retrovirus group FRD, member 1 protein-coding 13-PTNLD9-TUMOR_peak_52412 chr8 144129481 144129747 + 5.11180 NA intron (NM_173687, intron 4 of 5) LTR43-int|LTR|ERV1 8935 NM_173687 286122 Hs.660382 NM_173687 HPRD:08781 C8orf31 - chromosome 8 open reading frame 31 protein-coding 13-PTNLD9-TUMOR_peak_52065 chr8 131028748 131028936 + 5.11180 NA promoter-TSS (NR_046360) promoter-TSS (NR_046360) 55 NR_046360 51571 Hs.126941 NM_016623 HPRD:13313 FAM49B L1 family with sequence similarity 49, member B protein-coding 13-PTNLD9-TUMOR_peak_10947 chr11 94501433 94501593 + 5.11180 NA promoter-TSS (NM_130847) promoter-TSS (NM_130847) 5 NM_130847 154810 Hs.503594 NM_130847 HPRD:12451 AMOTL1 JEAP angiomotin like 1 protein-coding 13-PTNLD9-TUMOR_peak_11100 chr11 105947632 105947840 + 5.11088 NA promoter-TSS (NM_015423) promoter-TSS (NM_015423) -556 NM_015423 60496 Hs.524009 NM_015423 HPRD:09675 AASDHPPT AASD-PPT|LYS2|LYS5 aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase protein-coding 13-PTNLD9-TUMOR_peak_51517 chr8 104511270 104511459 + 5.11088 NA Intergenic CpG -1612 NM_001100117 9699 Hs.655271 NM_014677 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 13-PTNLD9-TUMOR_peak_24139 chr19 13905310 13905428 + 5.10891 NA promoter-TSS (NM_023072) promoter-TSS (NM_023072) -905 NM_023072 65249 Hs.466015 NM_023072 HPRD:15904 ZSWIM4 - zinc finger, SWIM-type containing 4 protein-coding 13-PTNLD9-TUMOR_peak_31276 chr20 45989495 45989757 + 5.10429 NA Intergenic Intergenic -3993 NM_183048 23613 Hs.446240 NM_012408 HPRD:10166 ZMYND8 PRKCBP1|PRO2893|RACK7 zinc finger, MYND-type containing 8 protein-coding 13-PTNLD9-TUMOR_peak_43472 chr6 2840367 2840508 + 5.10429 NA intron (NR_073111, intron 2 of 7) L2a|LINE|L2 1846 NR_073111 1992 Hs.381167 NM_030666 HPRD:00555 SERPINB1 EI|ELANH2|HEL57|LEI|M/NEI|MNEI|PI-2|PI2 serpin peptidase inhibitor, clade B (ovalbumin), member 1 protein-coding 13-PTNLD9-TUMOR_peak_47927 chr7 73593030 73593373 + 5.10095 NA intron (NM_031992, intron 1 of 5) intron (NM_031992, intron 1 of 5) 4495 NM_022170 7458 Hs.520943 NM_022170 HPRD:11940 EIF4H WBSCR1|WSCR1|eIF-4H eukaryotic translation initiation factor 4H protein-coding 13-PTNLD9-TUMOR_peak_18221 chr16 2059835 2059943 + 5.10095 NA promoter-TSS (NM_178167) promoter-TSS (NM_178167) -67 NM_178167 90850 Hs.343828 NM_178167 HPRD:11732 ZNF598 - zinc finger protein 598 protein-coding 13-PTNLD9-TUMOR_peak_50333 chr8 23082890 23083028 + 5.09968 NA promoter-TSS (NM_003844) promoter-TSS (NM_003844) 225 NR_033928 389641 Hs.591835 NR_033928 ENSG00000246582 LOC389641 - uncharacterized LOC389641 ncRNA 13-PTNLD9-TUMOR_peak_46840 chr7 6630077 6630171 + 5.09968 NA intron (NM_024067, intron 1 of 5) CpG 209 NM_024067 79034 Hs.487511 NM_024067 HPRD:12913 C7orf26 - chromosome 7 open reading frame 26 protein-coding 13-PTNLD9-TUMOR_peak_33451 chr22 46481826 46481930 + 5.09968 NA promoter-TSS (NR_027033) promoter-TSS (NR_027033) 1 NR_110479 400931 Hs.235838 NM_207477 HPRD:16929 MIRLET7BHG linc-Ppara MIRLET7B host gene (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_54523 chr9 116993771 116993898 + 5.09968 NA intron (NM_032888, intron 15 of 60) intron (NM_032888, intron 15 of 60) 22120 NR_030255 619556 NR_030255 MIR455 MIRN455|hsa-mir-455 microRNA 455 ncRNA 13-PTNLD9-TUMOR_peak_35642 chr3 124480299 124480464 + 5.09968 NA Intergenic Intergenic 31168 NR_033434 7372 Hs.2057 NM_000373 UMPS OPRT uridine monophosphate synthetase protein-coding 13-PTNLD9-TUMOR_peak_51694 chr8 118878929 118879027 + 5.09968 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 245080 NM_000127 2131 Hs.492618 NM_000127 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_45733 chr6 91005809 91005905 + 5.09968 NA intron (NM_021813, intron 1 of 8) CpG 770 NM_021813 60468 Hs.269764 NM_021813 HPRD:12012 BACH2 BTBD25 BTB and CNC homology 1, basic leucine zipper transcription factor 2 protein-coding 13-PTNLD9-TUMOR_peak_2400 chr1 89487600 89487755 + 5.09968 NA intron (NM_018284, intron 1 of 10) intron (NM_018284, intron 1 of 10) 872 NM_018284 2635 Hs.720167 NM_018284 HPRD:02683 GBP3 - guanylate binding protein 3 protein-coding 13-PTNLD9-TUMOR_peak_24180 chr19 14464228 14464392 + 5.09968 NA Intergenic Intergenic -27646 NM_078481 976 Hs.466039 NM_001784 HPRD:03130 CD97 TM7LN1 CD97 molecule protein-coding 13-PTNLD9-TUMOR_peak_25055 chr19 42463545 42463639 + 5.09968 NA promoter-TSS (NM_006423) promoter-TSS (NM_006423) -64 NM_006423 10567 Hs.11417 NM_006423 HPRD:05375 RABAC1 PRA1|PRAF1|YIP3 Rab acceptor 1 (prenylated) protein-coding 13-PTNLD9-TUMOR_peak_52992 chr9 32165204 32165371 + 5.09968 NA Intergenic HERVH-int|LTR|ERV1 -219314 NM_002197 48 Hs.567229 NM_002197 HPRD:00013 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1, soluble protein-coding 13-PTNLD9-TUMOR_peak_17605 chr15 72514896 72515006 + 5.09968 NA intron (NM_001206798, intron 1 of 10) intron (NM_001206798, intron 1 of 10) 7112 NM_001206799 5315 Hs.534770 NM_002654 HPRD:01529 PKM CTHBP|HEL-S-30|OIP3|PK3|PKM2|TCB|THBP1 pyruvate kinase, muscle protein-coding 13-PTNLD9-TUMOR_peak_37114 chr3 187443175 187443320 + 5.09591 NA intron (NM_001706, intron 8 of 9) C-rich|Low_complexity|Low_complexity 9448 NM_001134738 604 Hs.478588 NM_001706 HPRD:00180 BCL6 BCL5|BCL6A|LAZ3|ZBTB27|ZNF51 B-cell CLL/lymphoma 6 protein-coding 13-PTNLD9-TUMOR_peak_8989 chr11 8928362 8928466 + 5.09591 NA intron (NM_005418, intron 1 of 22) intron (NM_005418, intron 1 of 22) 4084 NM_005418 6764 Hs.117715 NM_005418 HPRD:00780 ST5 DENND2B|HTS1|p126 suppression of tumorigenicity 5 protein-coding 13-PTNLD9-TUMOR_peak_25453 chr19 50931315 50931464 + 5.09591 NA exon (NM_003121, exon 6 of 6) exon (NM_003121, exon 6 of 6) -4771 NM_004533 4606 Hs.85937 NM_004533 HPRD:01184 MYBPC2 MYBPC|MYBPCF myosin binding protein C, fast type protein-coding 13-PTNLD9-TUMOR_peak_3364 chr1 146814790 146814986 + 5.09591 NA Intergenic L1PA5|LINE|L1 100597 NM_001256337 9557 Hs.191164 NM_004284 HPRD:09880 CHD1L ALC1|CHDL chromodomain helicase DNA binding protein 1-like protein-coding 13-PTNLD9-TUMOR_peak_20004 chr16 85958353 85958610 + 5.09396 NA Intergenic Intergenic 6528 NR_106832 102466732 NR_106832 MIR6774 hsa-mir-6774 microRNA 6774 ncRNA 13-PTNLD9-TUMOR_peak_5942 chr1 235116512 235116640 + 5.09396 NA Intergenic AmnSINE1|SINE|Deu 174676 NR_002956 677802 Hs.744743 NR_002956 SNORA14B ACA14b small nucleolar RNA, H/ACA box 14B snoRNA 13-PTNLD9-TUMOR_peak_22588 chr18 10526335 10526467 + 5.09396 NA intron (NM_003826, intron 1 of 11) CpG 528 NM_003826 8774 Hs.464622 NM_003826 HPRD:04448 NAPG GAMMASNAP N-ethylmaleimide-sensitive factor attachment protein, gamma protein-coding 13-PTNLD9-TUMOR_peak_16323 chr14 77422886 77423105 + 5.09396 NA Intergenic CpG 72047 NM_024496 64207 Hs.179260 NM_024496 HPRD:10713 IRF2BPL C14orf4|EAP1 interferon regulatory factor 2 binding protein-like protein-coding 13-PTNLD9-TUMOR_peak_31233 chr20 44849574 44849675 + 5.09396 NA intron (NM_021248, intron 4 of 11) MLT1H2|LTR|ERVL-MaLR 87513 NM_021248 64405 Hs.472861 NM_021248 HPRD:13018 CDH22 C20orf25|dJ998H6.1 cadherin 22, type 2 protein-coding 13-PTNLD9-TUMOR_peak_51933 chr8 126714151 126714379 + 5.09396 NA Intergenic Intergenic 249176 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 13-PTNLD9-TUMOR_peak_20892 chr17 34493496 34493595 + 5.09106 NA Intergenic Intergenic 30602 NM_001001437 414062 Hs.454713 NM_001001437 HPRD:14426 CCL3L3 464.2|D17S1718|G0S19-2|LD78|LD78BETA|SCYA3L|SCYA3L1 chemokine (C-C motif) ligand 3-like 3 protein-coding 13-PTNLD9-TUMOR_peak_42703 chr5 151119825 151120135 + 5.09004 NA Intergenic Intergenic 18230 NM_004045 475 Hs.125213 NM_004045 HPRD:03779 ATOX1 ATX1|HAH1 antioxidant 1 copper chaperone protein-coding 13-PTNLD9-TUMOR_peak_31275 chr20 45988990 45989216 + 5.08678 NA Intergenic MER20|DNA|hAT-Charlie -3470 NM_183048 23613 Hs.446240 NM_012408 HPRD:10166 ZMYND8 PRKCBP1|PRO2893|RACK7 zinc finger, MYND-type containing 8 protein-coding 13-PTNLD9-TUMOR_peak_38991 chr4 103748267 103748548 + 5.08678 NA promoter-TSS (NM_181892) promoter-TSS (NM_181892) -67 NM_181892 7323 Hs.518773 NM_003340 HPRD:04269 UBE2D3 E2(17)KB3|UBC4/5|UBCH5C ubiquitin-conjugating enzyme E2D 3 protein-coding 13-PTNLD9-TUMOR_peak_53179 chr9 37415362 37415528 + 5.08199 NA Intergenic Intergenic -7262 NM_012203 9380 Hs.155742 NM_012203 HPRD:05052 GRHPR GLXR|GLYD|PH2 glyoxylate reductase/hydroxypyruvate reductase protein-coding 13-PTNLD9-TUMOR_peak_34563 chr3 49756879 49757001 + 5.08199 NA 5' UTR (NM_198722, exon 1 of 1) 5' UTR (NM_198722, exon 1 of 1) 298 NM_198722 386724 Hs.567903 NM_198722 HPRD:16484 AMIGO3 ALI3|AMIGO-3 adhesion molecule with Ig-like domain 3 protein-coding 13-PTNLD9-TUMOR_peak_14109 chr12 122224414 122224627 + 5.08199 NA intron (NM_019034, intron 2 of 4) L2a|LINE|L2 7074 NM_019034 54509 Hs.644504 NM_019034 HPRD:15246 RHOF ARHF|RIF ras homolog family member F (in filopodia) protein-coding 13-PTNLD9-TUMOR_peak_27445 chr2 85839135 85839239 + 5.08199 NA promoter-TSS (NM_001256727) promoter-TSS (NM_001256727) -8 NM_001013649 388969 Hs.516159 NM_001013649 C2orf68 HCRCN81 chromosome 2 open reading frame 68 protein-coding 13-PTNLD9-TUMOR_peak_12110 chr12 10306078 10306409 + 5.07943 NA Intergenic L1PA16|LINE|L1 -16955 NM_001079815 120939 Hs.226422 NM_153022 HPRD:08709 TMEM52B C12orf59 transmembrane protein 52B protein-coding 13-PTNLD9-TUMOR_peak_23389 chr18 61139793 61139935 + 5.07943 NA Intergenic Intergenic -4280 NM_002639 5268 Hs.55279 NM_002639 HPRD:01111 SERPINB5 PI5|maspin serpin peptidase inhibitor, clade B (ovalbumin), member 5 protein-coding 13-PTNLD9-TUMOR_peak_26582 chr2 37158260 37158391 + 5.07943 NA intron (NM_003162, intron 1 of 17) intron (NM_003162, intron 1 of 17) 35290 NM_003162 6801 Hs.127486 NM_003162 HPRD:18124 STRN SG2NA striatin, calmodulin binding protein protein-coding 13-PTNLD9-TUMOR_peak_7700 chr10 73572270 73572364 + 5.07943 NA exon (NM_022124, exon 65 of 68) exon (NM_022124, exon 65 of 68) 677 NM_001171936 64072 Hs.656032 NM_022124 HPRD:05699 CDH23 CDHR23|USH1D cadherin-related 23 protein-coding 13-PTNLD9-TUMOR_peak_20778 chr17 27451216 27451312 + 5.07943 NA intron (NM_203318, intron 2 of 40) intron (NM_203318, intron 2 of 40) -48637 NM_004740 9220 Hs.462590 NM_004740 TIAF1 MAJN|SPR210 TGFB1-induced anti-apoptotic factor 1 protein-coding 13-PTNLD9-TUMOR_peak_26016 chr2 8665843 8665970 + 5.07943 NA Intergenic Intergenic 58016 NR_110257 101929567 Hs.634706 NR_110257 ENSG00000236008 LOC101929567 - uncharacterized LOC101929567 ncRNA 13-PTNLD9-TUMOR_peak_18708 chr16 20866849 20866943 + 5.07943 NA Intergenic Intergenic -44661 NM_020424 57149 Hs.745012 NM_020424 HPRD:14254 LYRM1 A211C6.1 LYR motif containing 1 protein-coding 13-PTNLD9-TUMOR_peak_41946 chr5 126565339 126565455 + 5.07943 NA Intergenic CpG -61059 NM_001256545 84466 Hs.438709 NM_032446 HPRD:14384 MEGF10 EMARDD multiple EGF-like-domains 10 protein-coding 13-PTNLD9-TUMOR_peak_52104 chr8 131762033 131762127 + 5.07943 NA Intergenic Intergenic 290755 NM_001115 114 Hs.591859 NM_001115 HPRD:00051 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 (brain) protein-coding 13-PTNLD9-TUMOR_peak_30531 chr20 18505438 18505582 + 5.07943 NA intron (NM_006363, intron 5 of 19) intron (NM_006363, intron 5 of 19) 16903 NM_001172745 10483 Hs.369373 NM_006363 HPRD:11543 SEC23B CDA-II|CDAII|CDAN2|HEMPAS Sec23 homolog B (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_7959 chr10 89605835 89606066 + 5.07943 NA TTS (NR_028492) TTS (NR_028492) 17244 NM_001126049 100144748 Hs.559820 NM_001126049 ENSG00000227268 KLLN CWS4|KILLIN killin, p53-regulated DNA replication inhibitor protein-coding 13-PTNLD9-TUMOR_peak_42253 chr5 138310874 138311103 + 5.07943 NA intron (NM_022464, intron 7 of 9) intron (NM_022464, intron 7 of 9) -99931 NM_015564 26045 Hs.656653 NM_015564 HPRD:17454 LRRTM2 - leucine rich repeat transmembrane neuronal 2 protein-coding 13-PTNLD9-TUMOR_peak_24714 chr19 34723896 34724233 + 5.07141 NA Intergenic Intergenic -21392 NM_014686 9710 Hs.330073 NM_014686 HPRD:11077 KIAA0355 - KIAA0355 protein-coding 13-PTNLD9-TUMOR_peak_35674 chr3 125105816 125106006 + 5.07141 NA Intergenic Intergenic -11713 NM_021964 7707 Hs.592591 NM_021964 HPRD:03540 ZNF148 BERF-1|BFCOL1|HT-BETA|ZBP-89|ZFP148|pHZ-52 zinc finger protein 148 protein-coding 13-PTNLD9-TUMOR_peak_20226 chr17 1546757 1546946 + 5.07141 NA exon (NM_003693, exon 4 of 11) exon (NM_003693, exon 4 of 11) 2232 NR_028075 8578 Hs.647430 NM_003693 HPRD:06386 SCARF1 SREC|SREC-I|SREC1 scavenger receptor class F, member 1 protein-coding 13-PTNLD9-TUMOR_peak_32490 chr21 44876590 44876851 + 5.07141 NA Intergenic CpG 6816 NR_026960 284836 Hs.146127 NM_194309 HPRD:10738 LINC00319 C21orf125|NCRNA00319|PRED49 long intergenic non-protein coding RNA 319 ncRNA 13-PTNLD9-TUMOR_peak_1781 chr1 52608115 52608460 + 5.07141 NA intron (NM_004799, intron 1 of 18) CpG 521 NM_007324 9372 Hs.532345 NM_004799 HPRD:04782 ZFYVE9 MADHIP|NSP|PPP1R173|SARA|SMADIP zinc finger, FYVE domain containing 9 protein-coding 13-PTNLD9-TUMOR_peak_22339 chr17 80376237 80376336 + 5.07141 NA promoter-TSS (NM_173620) promoter-TSS (NM_173620) 34 NM_173620 284004 Hs.744207 NM_173620 HPRD:08677 HEXDC - hexosaminidase (glycosyl hydrolase family 20, catalytic domain) containing protein-coding 13-PTNLD9-TUMOR_peak_30738 chr20 30249561 30249705 + 5.07141 NA Intergenic Intergenic 23942 NM_032609 84701 Hs.277101 NM_032609 HPRD:12143 COX4I2 COX4|COX4-2|COX4B|COX4L2|COXIV-2|dJ857M17.2 cytochrome c oxidase subunit IV isoform 2 (lung) protein-coding 13-PTNLD9-TUMOR_peak_52874 chr9 20658489 20658592 + 5.07141 NA intron (NM_017794, intron 1 of 45) L1HS|LINE|L1 232 NM_017794 54914 Hs.136247 NM_017794 HPRD:11162 FOCAD KIAA1797 focadhesin protein-coding 13-PTNLD9-TUMOR_peak_20985 chr17 37886480 37886744 + 5.07141 NA intron (NM_032339, intron 1 of 3) CpG 176 NM_032339 84299 Hs.333526 NM_032339 HPRD:12681 MIEN1 C17orf37|C35|ORB3|RDX12|XTP4 migration and invasion enhancer 1 protein-coding 13-PTNLD9-TUMOR_peak_3710 chr1 153363530 153363648 + 5.07141 NA promoter-TSS (NM_002964) promoter-TSS (NM_002964) 75 NM_002964 6279 Hs.416073 NM_002964 HPRD:00471 S100A8 60B8AG|CAGA|CFAG|CGLA|CP-10|L1Ag|MA387|MIF|MRP8|NIF|P8 S100 calcium binding protein A8 protein-coding 13-PTNLD9-TUMOR_peak_32471 chr21 44596851 44596964 + 5.07136 NA Intergenic Intergenic 7789 NM_000394 1409 Hs.184085 NM_000394 HPRD:00427 CRYAA CRYA1|CTRCT9|HSPB4 crystallin, alpha A protein-coding 13-PTNLD9-TUMOR_peak_36077 chr3 137798017 137798117 + 5.07136 NA intron (NM_173543, intron 10 of 15) intron (NM_173543, intron 10 of 15) 34255 NM_001170538 199221 Hs.351403 NM_173543 HPRD:08145 DZIP1L DZIP2 DAZ interacting zinc finger protein 1-like protein-coding 13-PTNLD9-TUMOR_peak_32403 chr21 43187302 43187443 + 5.07136 NA promoter-TSS (NM_020639) promoter-TSS (NM_020639) -123 NM_020639 54101 Hs.517310 NM_020639 HPRD:10419 RIPK4 ANKK2|ANKRD3|DIK|NKRD3|PKK|PPS2|RIP4 receptor-interacting serine-threonine kinase 4 protein-coding 13-PTNLD9-TUMOR_peak_49611 chr7 150005117 150005249 + 5.07136 NA intron (NM_001164458, intron 1 of 7) HERVH-int|LTR|ERV1 -5114 NM_001164459 653857 Hs.664579 NM_001164458 ENSG00000106526 ACTR3C ARP11 ARP3 actin-related protein 3 homolog C (yeast) protein-coding 13-PTNLD9-TUMOR_peak_7244 chr10 47243536 47243841 + 5.07116 NA promoter-TSS (NR_024495) promoter-TSS (NR_024495) -177 NR_024495 642826 Hs.463017 NR_024495 BMS1P6 BMS1LP2|BMS1LP6|BMS1P2|bA302K17.2 BMS1 pseudogene 6 pseudo 13-PTNLD9-TUMOR_peak_9886 chr11 57333741 57333844 + 5.07116 NA intron (NM_198183, intron 1 of 3) intron (NM_198183, intron 1 of 3) 1388 NM_004223 9246 Hs.425777 NM_004223 HPRD:04867 UBE2L6 RIG-B|UBCH8 ubiquitin-conjugating enzyme E2L 6 protein-coding 13-PTNLD9-TUMOR_peak_20946 chr17 36621690 36621836 + 5.07116 NA intron (NM_001199417, intron 6 of 23) intron (NM_001199417, intron 6 of 23) 37043 NM_001199417 57636 Hs.374446 NM_020876 ENSG00000225485 ARHGAP23 - Rho GTPase activating protein 23 protein-coding 13-PTNLD9-TUMOR_peak_20613 chr17 19047826 19047951 + 5.07116 NA intron (NM_001129778, intron 3 of 3) intron (NM_001129778, intron 3 of 3) 14297 NM_001291904 79999 Hs.677375 NM_024934 LOC79999 - uncharacterized LOC79999 protein-coding 13-PTNLD9-TUMOR_peak_54443 chr9 114361623 114361717 + 5.07116 NA promoter-TSS (NM_012212) promoter-TSS (NM_012212) 41 NM_012212 22949 Hs.584864 NM_012212 HPRD:03173 PTGR1 LTB4DH|PGR1|ZADH3 prostaglandin reductase 1 protein-coding 13-PTNLD9-TUMOR_peak_22214 chr17 78009794 78009944 + 5.07116 NA promoter-TSS (NM_019020) promoter-TSS (NM_019020) -212 NM_019020 125058 Hs.369819 NM_019020 HPRD:10261 TBC1D16 - TBC1 domain family, member 16 protein-coding 13-PTNLD9-TUMOR_peak_35971 chr3 133266381 133266475 + 5.07116 NA Intergenic MSTA|LTR|ERVL-MaLR -26006 NM_001134422 55573 Hs.518265 NM_017548 HPRD:13627 CDV3 H41 CDV3 homolog (mouse) protein-coding 13-PTNLD9-TUMOR_peak_23156 chr18 47340633 47340749 + 5.07116 NA promoter-TSS (NM_006111) promoter-TSS (NM_006111) 298 NR_117096 103091864 Hs.646459 NR_117096 SNHG22 SCARNA17HG small nucleolar RNA host gene 22 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_50473 chr8 28351782 28352045 + 5.07116 NA intron (NM_145866, intron 1 of 6) CpG 191 NM_145866 7976 Hs.40735 NM_017412 HPRD:05849 FZD3 Fz-3 frizzled class receptor 3 protein-coding 13-PTNLD9-TUMOR_peak_32540 chr21 45930499 45930632 + 5.07116 NA intron (NR_103707, intron 6 of 6) intron (NR_103707, intron 6 of 6) 4638 NR_103707 54082 Hs.570444 NR_103707 TSPEAR-AS1 C21orf31 TSPEAR antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_56749 chrX 154256087 154256249 + 5.06990 NA intron (NM_023934, intron 1 of 4) MER63B|DNA|hAT-Blackjack 1104 NM_023934 65991 Hs.356050 NM_023934 FUNDC2 DC44|HCBP6|HCC3|PD03104 FUN14 domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_10141 chr11 64014395 64014489 + 5.06990 NA promoter-TSS (NM_138689) promoter-TSS (NM_138689) -29 NM_138689 26472 Hs.523760 NM_138689 HPRD:18513 PPP1R14B PHI-1|PLCB3N|PNG|SOM172 protein phosphatase 1, regulatory (inhibitor) subunit 14B protein-coding 13-PTNLD9-TUMOR_peak_1440 chr1 43586013 43586149 + 5.06441 NA Intergenic L1PA2|LINE|L1 -27513 NM_001101376 440585 Hs.657614 NM_001101376 ENSG00000186973 FAM183A - family with sequence similarity 183, member A protein-coding 13-PTNLD9-TUMOR_peak_53850 chr9 88556352 88556599 + 5.06363 NA intron (NM_024635, intron 1 of 22) CpG 418 NM_024635 60560 Hs.436098 NM_024635 HPRD:11291 NAA35 EGAP|MAK10|MAK10P|bA379P1.1 N(alpha)-acetyltransferase 35, NatC auxiliary subunit protein-coding 13-PTNLD9-TUMOR_peak_10340 chr11 67070370 67070475 + 5.06363 NA promoter-TSS (NM_017857) promoter-TSS (NM_017857) -497 NM_017857 54961 Hs.29173 NM_017857 HPRD:09488 SSH3 SSH3L slingshot protein phosphatase 3 protein-coding 13-PTNLD9-TUMOR_peak_28716 chr2 151341909 151342053 + 5.06363 NA intron (NM_005168, intron 3 of 5) CpG 2228 NM_005168 390 Hs.6838 NM_005168 HPRD:04233 RND3 ARHE|Rho8|RhoE|memB Rho family GTPase 3 protein-coding 13-PTNLD9-TUMOR_peak_45146 chr6 44227805 44227961 + 5.05575 NA exon (NM_004556, exon 5 of 6) exon (NM_004556, exon 5 of 6) -2256 NM_001286511 347734 Hs.182885 NM_178148 HPRD:11576 SLC35B2 PAPST1|SLL|UGTrel4 solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B2 protein-coding 13-PTNLD9-TUMOR_peak_34562 chr3 49724258 49724360 + 5.05575 NA intron (NM_020998, intron 6 of 17) CpG-18518 1887 NM_020998 4485 Hs.349110 NM_020998 HPRD:00798 MST1 D3F15S2|DNF15S2|HGFL|MSP|NF15S2 macrophage stimulating 1 (hepatocyte growth factor-like) protein-coding 13-PTNLD9-TUMOR_peak_32222 chr21 36262357 36262563 + 5.05144 NA intron (NM_001754, intron 3 of 8) CpG -1473 NM_001001890 861 Hs.149261 NM_001754 HPRD:01043 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBFA2|EVI-1|PEBP2aB runt-related transcription factor 1 protein-coding 13-PTNLD9-TUMOR_peak_43006 chr5 171614193 171614300 + 5.04839 NA intron (NM_005990, intron 1 of 18) intron (NM_005990, intron 1 of 18) 1100 NM_005990 6793 Hs.744005 NM_005990 HPRD:06796 STK10 LOK|PRO2729 serine/threonine kinase 10 protein-coding 13-PTNLD9-TUMOR_peak_33566 chr3 3842274 3842564 + 5.04831 NA intron (NM_020873, intron 1 of 1) CpG 1298 NM_020873 57633 Hs.163244 NM_020873 HPRD:14320 LRRN1 FIGLER3|NLRR-1 leucine rich repeat neuronal 1 protein-coding 13-PTNLD9-TUMOR_peak_10839 chr11 86281172 86281285 + 5.04742 NA intron (NM_001014811, intron 1 of 13) intron (NM_001014811, intron 1 of 13) 102012 NM_001014811 10873 Hs.199743 NM_006680 HPRD:06862 ME3 NADP-ME malic enzyme 3, NADP(+)-dependent, mitochondrial protein-coding 13-PTNLD9-TUMOR_peak_31622 chr20 54796351 54796540 + 5.04742 NA Intergenic LTR10A|LTR|ERV1 -27343 NM_019888 4159 Hs.248018 NM_019888 HPRD:01115 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 13-PTNLD9-TUMOR_peak_250 chr1 7973227 7973354 + 5.04742 NA Intergenic LTR36|LTR|ERV1 29935 NM_001561 3604 Hs.86447 NM_001561 TNFRSF9 4-1BB|CD137|CDw137|ILA tumor necrosis factor receptor superfamily, member 9 protein-coding 13-PTNLD9-TUMOR_peak_54952 chr9 135057346 135057440 + 5.04742 NA intron (NM_032536, intron 2 of 7) intron (NM_032536, intron 2 of 7) 20059 NM_032536 84628 Hs.163642 NM_032536 HPRD:17650 NTNG2 LHLL9381|Lmnt2|NTNG1|bA479K20.1 netrin G2 protein-coding 13-PTNLD9-TUMOR_peak_4490 chr1 175857217 175857314 + 5.04742 NA Intergenic Intergenic 80411 NR_002998 677679 NR_002998 SCARNA3 HBI-100 small Cajal body-specific RNA 3 ncRNA 13-PTNLD9-TUMOR_peak_49014 chr7 128858520 128858650 + 5.04742 NA Intergenic Intergenic -6270 NM_001130720 23382 Hs.600789 NM_015328 HPRD:11113 AHCYL2 ADOHCYASE3 adenosylhomocysteinase-like 2 protein-coding 13-PTNLD9-TUMOR_peak_50387 chr8 26049247 26049362 + 5.04742 NA Intergenic Intergenic -99703 NM_002717 5520 Hs.146339 NM_002717 HPRD:09223 PPP2R2A B55A|B55ALPHA|PR52A|PR55A protein phosphatase 2, regulatory subunit B, alpha protein-coding 13-PTNLD9-TUMOR_peak_47016 chr7 21209745 21209844 + 5.04742 NA Intergenic Intergenic -257895 NM_003112 6671 Hs.88013 NM_003112 HPRD:02764 SP4 HF1B|SPR-1 Sp4 transcription factor protein-coding 13-PTNLD9-TUMOR_peak_23912 chr19 10014054 10014216 + 5.04742 NA intron (NM_058164, intron 1 of 5) intron (NM_058164, intron 1 of 5) 32935 NM_058164 93145 Hs.169743 NM_058164 HPRD:10127 OLFM2 NOE2|NOELIN2|NOELIN2_V1|OlfC olfactomedin 2 protein-coding 13-PTNLD9-TUMOR_peak_52286 chr8 140418128 140418222 + 5.04742 NA Intergenic Intergenic 297124 NR_104210 51305 Hs.493037 NM_001282534 HPRD:16167 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium channel, subfamily K, member 9 protein-coding 13-PTNLD9-TUMOR_peak_55539 chrX 12964987 12965099 + 5.04742 NA Intergenic Intergenic -3624 NR_030727 349408 Hs.685035 NR_030727 ENSG00000233338 TLR8-AS1 GS1-324M7.6 TLR8 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_41760 chr5 112417689 112417811 + 5.04742 NA intron (NM_002387, intron 9 of 16) intron (NM_002387, intron 9 of 16) 105343 NM_001242377 167227 Hs.443875 NM_152624 HPRD:13125 DCP2 NUDT20 decapping mRNA 2 protein-coding 13-PTNLD9-TUMOR_peak_54035 chr9 96589839 96589933 + 5.04742 NA Intergenic Intergenic 8247 NR_036254 100422927 NR_036254 miRBase:MI0015900 MIR4291 - microRNA 4291 ncRNA 13-PTNLD9-TUMOR_peak_28027 chr2 111158971 111159072 + 5.04742 NA Intergenic LTR13|LTR|ERVK -16908 NR_027244 151009 Hs.643369 NR_027244 LINC01106 - long intergenic non-protein coding RNA 1106 ncRNA 13-PTNLD9-TUMOR_peak_53999 chr9 94862877 94863069 + 5.04742 NA intron (NM_178324, intron 3 of 5) intron (NM_178324, intron 3 of 5) 14783 NM_178324 10558 Hs.90458 NM_006415 HPRD:05754 SPTLC1 HSAN1|HSN1|LBC1|LCB1|SPT1|SPTI serine palmitoyltransferase, long chain base subunit 1 protein-coding 13-PTNLD9-TUMOR_peak_42751 chr5 154317314 154317464 + 5.04603 NA intron (NM_001252156, intron 1 of 27) MIR3|SINE|MIR 387 NM_001252156 25929 Hs.483921 NM_015465 HPRD:06109 GEMIN5 GEMIN-5 gem (nuclear organelle) associated protein 5 protein-coding 13-PTNLD9-TUMOR_peak_10648 chr11 75173196 75173416 + 5.04603 NA intron (NM_030792, intron 4 of 16) intron (NM_030792, intron 4 of 16) -31632 NM_001039548 283212 Hs.292451 NM_173583 HPRD:08747 KLHL35 - kelch-like family member 35 protein-coding 13-PTNLD9-TUMOR_peak_45476 chr6 72130287 72130389 + 5.04603 NA promoter-TSS (NR_121615) promoter-TSS (NR_121615) 110 NR_121613 79940 Hs.368337 NR_026807 HPRD:12860 LINC00472 C6orf155 long intergenic non-protein coding RNA 472 ncRNA 13-PTNLD9-TUMOR_peak_13855 chr12 111369233 111369505 + 5.04603 NA Intergenic Intergenic -5037 NR_036513 100131138 Hs.152129 NR_036513 ENSG00000185847 LINC01405 - long intergenic non-protein coding RNA 1405 ncRNA 13-PTNLD9-TUMOR_peak_14016 chr12 120502206 120502357 + 5.04603 NA intron (NM_207311, intron 3 of 8) intron (NM_207311, intron 3 of 8) 52362 NM_001167606 11021 Hs.524788 NM_006861 HPRD:05010 RAB35 H-ray|RAB1C|RAY RAB35, member RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_49608 chr7 149934813 149934917 + 5.04603 NA Intergenic LTR16B2|LTR|ERVL 65204 NM_001164459 653857 Hs.664579 NM_001164458 ENSG00000106526 ACTR3C ARP11 ARP3 actin-related protein 3 homolog C (yeast) protein-coding 13-PTNLD9-TUMOR_peak_37287 chr3 193665583 193665682 + 5.04603 NA Intergenic Intergenic 46395 NR_027764 100128023 Hs.730112 NR_027764 DPPA2P3 - developmental pluripotency associated 2 pseudogene 3 pseudo 13-PTNLD9-TUMOR_peak_49222 chr7 135002592 135002686 + 5.04603 NA Intergenic Intergenic 85908 NM_182489 346673 Hs.592279 NM_182489 HPRD:18123 STRA8 - stimulated by retinoic acid 8 protein-coding 13-PTNLD9-TUMOR_peak_34462 chr3 47422989 47423118 + 5.04482 NA intron (NM_015466, intron 1 of 24) CpG 562 NM_015466 25930 Hs.25524 NM_015466 HPRD:05959 PTPN23 HD-PTP|HDPTP|PTP-TD14 protein tyrosine phosphatase, non-receptor type 23 protein-coding 13-PTNLD9-TUMOR_peak_52468 chr8 144926274 144926545 + 5.04482 NA Intergenic LTR13|LTR|ERVK -3263 NM_178564 340371 Hs.521926 NM_178564 HPRD:14838 NRBP2 TRG16|pp9320 nuclear receptor binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_21212 chr17 43253862 43253958 + 5.04482 NA Intergenic AluSc5|SINE|Alu 15646 NM_144608 124790 Hs.56382 NM_144608 HPRD:08129 HEXIM2 - hexamethylene bis-acetamide inducible 2 protein-coding 13-PTNLD9-TUMOR_peak_42615 chr5 149522879 149523051 + 5.04400 NA intron (NM_002609, intron 1 of 22) intron (NM_002609, intron 1 of 22) 12457 NM_002609 5159 Hs.509067 NM_002609 HPRD:01423 PDGFRB CD140B|IBGC4|IMF1|JTK12|PDGFR|PDGFR-1|PDGFR1 platelet-derived growth factor receptor, beta polypeptide protein-coding 13-PTNLD9-TUMOR_peak_54138 chr9 99983918 99984108 + 5.04400 NA Intergenic CpG -16695 NR_036527 57653 Hs.435629 NR_036527 LOC100499484-C9ORF174 - LOC100499484-C9orf174 readthrough ncRNA 13-PTNLD9-TUMOR_peak_46161 chr6 140299095 140299256 + 5.04400 NA TTS (NR_121624) TTS (NR_121624) 1719 NR_121622 100507477 Hs.179213 NR_121622 LOC100507477 - uncharacterized LOC100507477 ncRNA 13-PTNLD9-TUMOR_peak_534 chr1 16678997 16679111 + 5.04400 NA promoter-TSS (NM_018994) promoter-TSS (NM_018994) -106 NM_018994 54455 Hs.522384 NM_018994 ENSG00000037637 FBXO42 Fbx42|JFK F-box protein 42 protein-coding 13-PTNLD9-TUMOR_peak_43536 chr6 3517655 3517824 + 5.04400 NA Intergenic Intergenic -60946 NM_015482 63027 Hs.713588 NM_015482 HPRD:12904 SLC22A23 C6orf85 solute carrier family 22, member 23 protein-coding 13-PTNLD9-TUMOR_peak_16631 chr14 103596111 103596242 + 5.04400 NA exon (NM_006291, exon 3 of 11) exon (NM_006291, exon 3 of 11) 3512 NM_006291 7127 Hs.525607 NM_006291 HPRD:04487 TNFAIP2 B94|EXOC3L3 tumor necrosis factor, alpha-induced protein 2 protein-coding 13-PTNLD9-TUMOR_peak_52176 chr8 134465668 134465812 + 5.04400 NA Intergenic Intergenic 118443 NM_173344 6482 Hs.374257 NM_003033 HPRD:06219 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_17324 chr15 55582775 55582880 + 5.04400 NA promoter-TSS (NM_183235) promoter-TSS (NM_183235) -814 NM_183235 5873 Hs.654978 NM_004580 HPRD:04845 RAB27A GS2|HsT18676|RAB27|RAM RAB27A, member RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_42354 chr5 140699816 140699910 + 5.04400 NA 5' UTR (NM_005642, exon 1 of 1) 5' UTR (NM_005642, exon 1 of 1) 488 NM_005642 6879 Hs.438838 NM_005642 HPRD:07196 TAF7 TAF2F|TAFII55 TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa protein-coding 13-PTNLD9-TUMOR_peak_39545 chr4 146290705 146290799 + 5.04400 NA Intergenic L1PA2|LINE|L1 -112199 NM_005900 4086 Hs.604588 NM_005900 HPRD:03356 SMAD1 BSP-1|BSP1|JV4-1|JV41|MADH1|MADR1 SMAD family member 1 protein-coding 13-PTNLD9-TUMOR_peak_42482 chr5 145305054 145305189 + 5.04400 NA Intergenic Intergenic -11005 NM_152550 153769 Hs.443728 NM_152550 HPRD:10229 SH3RF2 HEPP1|POSHER|PPP1R39|RNF158 SH3 domain containing ring finger 2 protein-coding 13-PTNLD9-TUMOR_peak_21068 chr17 40021676 40021780 + 5.04400 NA promoter-TSS (NM_018143) promoter-TSS (NM_018143) -99 NM_018143 55175 Hs.592134 NM_018143 HPRD:13924 KLHL11 - kelch-like family member 11 protein-coding 13-PTNLD9-TUMOR_peak_34222 chr3 33759396 33759608 + 5.04400 NA 5' UTR (NM_015097, exon 1 of 39) 5' UTR (NM_015097, exon 1 of 39) 203 NM_015097 23122 Hs.108614 NM_015097 HPRD:12054 CLASP2 - cytoplasmic linker associated protein 2 protein-coding 13-PTNLD9-TUMOR_peak_2279 chr1 82267029 82267123 + 5.04400 NA intron (NM_001297706, intron 1 of 18) CpG 994 NM_012302 23266 Hs.24212 NM_012302 HPRD:06116 LPHN2 CIRL2|CL2|LEC1|LPHH1 latrophilin 2 protein-coding 13-PTNLD9-TUMOR_peak_30729 chr20 30183519 30183624 + 5.03449 NA Intergenic L2a|LINE|L2 -9515 NM_181353 3397 Hs.504609 NM_002165 HPRD:08980 ID1 ID|bHLHb24 inhibitor of DNA binding 1, dominant negative helix-loop-helix protein protein-coding 13-PTNLD9-TUMOR_peak_23493 chr18 74774689 74774985 + 5.02828 NA intron (NM_001025101, intron 3 of 8) intron (NM_001025101, intron 3 of 8) -45782 NM_001025092 4155 Hs.551713 NM_002385 HPRD:01158 MBP - myelin basic protein protein-coding 13-PTNLD9-TUMOR_peak_49720 chr7 152372907 152373052 + 5.02609 NA intron (NM_005431, intron 1 of 2) intron (NM_005431, intron 1 of 2) 271 NM_005431 7516 Hs.647093 NM_005431 HPRD:02656 XRCC2 - X-ray repair complementing defective repair in Chinese hamster cells 2 protein-coding 13-PTNLD9-TUMOR_peak_37355 chr3 194802389 194802530 + 5.02569 NA intron (NM_152531, intron 3 of 3) intron (NM_152531, intron 3 of 3) -12858 NR_104188 100874528 Hs.581659 NR_104188 XXYLT1-AS1 - XXYLT1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_3869 chr1 155295150 155295289 + 5.02397 NA exon (NM_014328, exon 4 of 9) exon (NM_014328, exon 4 of 9) 1033 NR_103478 23623 Hs.226499 NM_014328 HPRD:10206 RUSC1 NESCA RUN and SH3 domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_52494 chr8 145158505 145158816 + 5.02249 NA promoter-TSS (NM_032272) promoter-TSS (NM_032272) 478 NR_038270 81858 Hs.529755 NM_030974 HPRD:15463 SHARPIN SIPL1 SHANK-associated RH domain interactor protein-coding 13-PTNLD9-TUMOR_peak_1030 chr1 33686740 33686963 + 5.02081 NA Intergenic Intergenic -35323 NM_152493 149076 Hs.743358 NM_152493 HPRD:13394 ZNF362 RN|lin-29 zinc finger protein 362 protein-coding 13-PTNLD9-TUMOR_peak_44315 chr6 27652239 27652513 + 5.02081 NA Intergenic Intergenic -9438 NR_038293 100507173 Hs.635987 NR_038292 LINC01012 - long intergenic non-protein coding RNA 1012 ncRNA 13-PTNLD9-TUMOR_peak_47709 chr7 64126805 64126962 + 5.02081 NA intron (NM_001282360, intron 1 of 2) CpG 422 NR_104148 51427 Hs.50216 NM_016220 HPRD:18669 ZNF107 Y8|ZFD25|ZNF588|smap-7 zinc finger protein 107 protein-coding 13-PTNLD9-TUMOR_peak_47230 chr7 35087034 35087322 + 5.02081 NA Intergenic Intergenic -9525 NM_015283 23333 Hs.408623 NM_015283 ENSG00000173852 DPY19L1 - dpy-19-like 1 (C. elegans) protein-coding 13-PTNLD9-TUMOR_peak_5362 chr1 212658439 212658533 + 5.02081 NA Intergenic MamRep605|Unknown|Unknown 52257 NM_013349 29937 Hs.461787 NM_013349 HPRD:11603 NENF CIR2|SCIRP10|SPUF neudesin neurotrophic factor protein-coding 13-PTNLD9-TUMOR_peak_25437 chr19 50682364 50682502 + 5.01565 NA Intergenic Tigger15a|DNA|TcMar-Tigger -15895 NM_152358 126123 Hs.414175 NM_152358 HPRD:14578 IZUMO2 C19orf41|PLAL6978|PRO21961|SCRL IZUMO family member 2 protein-coding 13-PTNLD9-TUMOR_peak_48786 chr7 107307358 107307496 + 5.01565 NA intron (NM_000441, intron 3 of 20) L2a|LINE|L2 -5184 NR_028137 286002 Hs.512611 NR_028137 ENSG00000233705 SLC26A4-AS1 - SLC26A4 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_51171 chr8 77220761 77220908 + 5.01565 NA Intergenic L1PA2|LINE|L1 -98055 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 13-PTNLD9-TUMOR_peak_14278 chr12 127066890 127066985 + 5.01565 NA Intergenic Intergenic 107927 NR_110035 100996671 Hs.121392 NR_110034 LOC100996671 - uncharacterized LOC100996671 ncRNA 13-PTNLD9-TUMOR_peak_17292 chr15 52166908 52167099 + 5.01565 NA intron (NM_014547, intron 3 of 9) intron (NM_014547, intron 3 of 9) 45178 NM_014547 29766 Hs.4998 NM_014547 HPRD:10389 TMOD3 UTMOD tropomodulin 3 (ubiquitous) protein-coding 13-PTNLD9-TUMOR_peak_38656 chr4 78339916 78340043 + 5.01565 NA Intergenic Intergenic -92928 NM_006419 10563 Hs.100431 NM_006419 HPRD:05513 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 chemokine (C-X-C motif) ligand 13 protein-coding 13-PTNLD9-TUMOR_peak_11095 chr11 104918039 104918182 + 5.01565 NA Intergenic Intergenic -2059 NM_052889 114769 Hs.348365 NM_052889 HPRD:16740 CARD16 COP|COP1|PSEUDO-ICE caspase recruitment domain family, member 16 protein-coding 13-PTNLD9-TUMOR_peak_5873 chr1 233685823 233685946 + 5.01565 NA Intergenic LTR43|LTR|ERV1 -63866 NM_002245 3775 Hs.208544 NM_002245 HPRD:03447 KCNK1 DPK|HOHO|K2P1|K2p1.1|KCNO1|TWIK-1|TWIK1 potassium channel, subfamily K, member 1 protein-coding 13-PTNLD9-TUMOR_peak_15056 chr13 105302854 105303076 + 5.01565 NA Intergenic Intergenic -815251 NM_001161814 267012 Hs.381382 NM_172370 HPRD:07591 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 13-PTNLD9-TUMOR_peak_44405 chr6 29645156 29645296 + 5.01565 NA promoter-TSS (NM_001109809).8 promoter-TSS (NM_001109809).8 -295 NM_001109809 346171 Hs.156326 NM_001109809 ENSG00000204644 ZFP57 C6orf40|TNDM1|ZNF698|bA145L22|bA145L22.2 ZFP57 zinc finger protein protein-coding 13-PTNLD9-TUMOR_peak_45392 chr6 57037526 57037702 + 5.01565 NA promoter-TSS (NR_110742) promoter-TSS (NR_110742) 510 NM_004282 9532 Hs.745046 NM_004282 BAG2 BAG-2|dJ417I1.2 BCL2-associated athanogene 2 protein-coding 13-PTNLD9-TUMOR_peak_54557 chr9 117860865 117861184 + 5.01565 NA intron (NM_002160, intron 1 of 27) intron (NM_002160, intron 1 of 27) 19512 NM_002160 3371 Hs.143250 NM_002160 HPRD:01756 TNC 150-225|DFNA56|GMEM|GP|HXB|JI|TN|TN-C tenascin C protein-coding 13-PTNLD9-TUMOR_peak_13608 chr12 102961053 102961268 + 5.01565 NA Intergenic L2c|LINE|L2 -86782 NM_001111283 3479 Hs.160562 NM_000618 HPRD:00936 IGF1 IGF-I|IGF1A|IGFI insulin-like growth factor 1 (somatomedin C) protein-coding 13-PTNLD9-TUMOR_peak_9664 chr11 45690814 45690941 + 5.01565 NA Intergenic Intergenic -3671 NM_003654 8534 Hs.104576 NM_003654 CHST1 C6ST|GST-1|KS6ST|KSGal6ST|KSST carbohydrate (keratan sulfate Gal-6) sulfotransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_35825 chr3 128523207 128523301 + 5.01565 NA intron (NM_004637, intron 3 of 5) intron (NM_004637, intron 3 of 5) 67130 NR_034179 653712 Hs.653243 NR_034179 ENSG00000231305 LOC653712 - intraflagellar transport 122 homolog (Chlamydomonas) pseudogene pseudo 13-PTNLD9-TUMOR_peak_52376 chr8 143265398 143265837 + 5.01565 NA Intergenic Intergenic 7917 NR_039682 100616268 NR_039682 miRBase:MI0016823 MIR4472-1 - microRNA 4472-1 ncRNA 13-PTNLD9-TUMOR_peak_48384 chr7 96635491 96635659 + 5.01565 NA exon (NM_005222, exon 1 of 3) exon (NM_005222, exon 1 of 3) 285 NM_005222 1750 Hs.249196 NM_005222 HPRD:02493 DLX6 - distal-less homeobox 6 protein-coding 13-PTNLD9-TUMOR_peak_37109 chr3 187130348 187130442 + 5.01565 NA Intergenic L1PA2|LINE|L1 44227 NM_022147 64108 Hs.43388 NM_022147 RTP4 IFRG28|Z3CXXC4 receptor (chemosensory) transporter protein 4 protein-coding 13-PTNLD9-TUMOR_peak_6953 chr10 36163723 36163830 + 5.01565 NA Intergenic Intergenic 96546 NR_110138 102578074 NR_110138 LINC01452 PCAT5|TPCAT-10-36067 long intergenic non-protein coding RNA 1452 ncRNA 13-PTNLD9-TUMOR_peak_4619 chr1 181003018 181003120 + 5.01565 NA 5' UTR (NM_001531, exon 2 of 7) 5' UTR (NM_001531, exon 2 of 7) 508 NM_001194999 3140 Hs.13500 NM_001531 HPRD:09012 MR1 HLALS major histocompatibility complex, class I-related protein-coding 13-PTNLD9-TUMOR_peak_121 chr1 2254089 2254184 + 5.01565 NA intron (NM_024848, intron 13 of 13) CpG 29964 NR_024489 100129534 Hs.655313 NM_001127577 LOC100129534 - small nuclear ribonucleoprotein polypeptide N pseudogene pseudo 13-PTNLD9-TUMOR_peak_12400 chr12 28343305 28343399 + 5.01565 NA Intergenic CpG -66781 NM_018318 55297 Hs.653125 NM_018318 HPRD:16905 CCDC91 p56 coiled-coil domain containing 91 protein-coding 13-PTNLD9-TUMOR_peak_23378 chr18 60742504 60742598 + 5.01565 NA Intergenic MLT1N2|LTR|ERVL-MaLR 244062 NM_000633 596 Hs.150749 NM_000633 HPRD:01045 BCL2 Bcl-2|PPP1R50 B-cell CLL/lymphoma 2 protein-coding 13-PTNLD9-TUMOR_peak_8349 chr10 113344179 113344304 + 5.01565 NA Intergenic L1PA2|LINE|L1 507451 NM_000681 150 Hs.249159 NM_000681 HPRD:00078 ADRA2A ADRA2|ADRA2R|ADRAR|ALPHA2AAR|ZNF32 adrenoceptor alpha 2A protein-coding 13-PTNLD9-TUMOR_peak_2111 chr1 66946645 66946739 + 5.01565 NA Intergenic L1PA3|LINE|L1 -53133 NM_032291 84251 Hs.132121 NM_032291 HPRD:10910 SGIP1 - SH3-domain GRB2-like (endophilin) interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_47053 chr7 23075474 23075778 + 5.01565 NA Intergenic L1PA2|LINE|L1 -21856 NM_032581 84668 Hs.85603 NM_032581 HPRD:16837 FAM126A DRCTNNB1A|HCC|HLD5|HYCC1 family with sequence similarity 126, member A protein-coding 13-PTNLD9-TUMOR_peak_11436 chr11 121228897 121229012 + 5.01565 NA Intergenic AluYc|SINE|Alu 65377 NM_001024956 6309 Hs.287749 NM_006918 SC5D ERG3|S5DES|SC5DL sterol-C5-desaturase protein-coding 13-PTNLD9-TUMOR_peak_9650 chr11 45119356 45119450 + 5.01565 NA intron (NR_046338, intron 2 of 7) intron (NR_046338, intron 2 of 7) 3839 NR_046338 56981 Hs.178715 NM_020229 HPRD:11456 PRDM11 PFM8 PR domain containing 11 protein-coding 13-PTNLD9-TUMOR_peak_32348 chr21 40457032 40457126 + 5.01565 NA Intergenic Intergenic 98361 NM_003720 8624 Hs.473838 NM_003720 HPRD:05598 PSMG1 C21LRP|DSCR2|LRPC21|PAC-1|PAC1 proteasome (prosome, macropain) assembly chaperone 1 protein-coding 13-PTNLD9-TUMOR_peak_21792 chr17 63096182 63096278 + 5.01565 NA promoter-TSS (NR_110801) promoter-TSS (NR_110801) -700 NR_110801 100507002 Hs.729924 NR_110801 ENSG00000263470 LOC100507002 - uncharacterized LOC100507002 ncRNA 13-PTNLD9-TUMOR_peak_18795 chr16 23710632 23710733 + 5.01565 NA intron (NM_033266, intron 13 of 21) intron (NM_033266, intron 13 of 21) 14139 NM_033266 10595 Hs.592041 NM_033266 HPRD:04944 ERN2 IRE1-BETA|IRE1b endoplasmic reticulum to nucleus signaling 2 protein-coding 13-PTNLD9-TUMOR_peak_26761 chr2 44974552 44974646 + 5.01565 NA intron (NM_024766, intron 8 of 10) MIR3|SINE|MIR 194047 NR_103785 100506108 Hs.503113 NR_103785 ENSG00000236502 SIX3-AS1 - SIX3 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_51511 chr8 104311054 104311149 + 5.01565 NA promoter-TSS (NM_003506) promoter-TSS (NM_003506) 42 NM_003506 8323 Hs.591863 NM_003506 HPRD:04559 FZD6 FZ-6|FZ6|HFZ6|NDNC10 frizzled class receptor 6 protein-coding 13-PTNLD9-TUMOR_peak_6669 chr10 23342128 23342264 + 5.01205 NA Intergenic Intergenic -42231 NM_012228 22921 Hs.461420 NM_012228 HPRD:17606 MSRB2 CBS-1|CBS1|MSRB|PILB methionine sulfoxide reductase B2 protein-coding 13-PTNLD9-TUMOR_peak_24646 chr19 31202361 31202455 + 5.01205 NA Intergenic Intergenic 339080 NM_014717 9745 Hs.378901 NM_014717 HPRD:15825 ZNF536 - zinc finger protein 536 protein-coding 13-PTNLD9-TUMOR_peak_38205 chr4 39448877 39449148 + 5.01205 NA exon (NM_175737, exon 4 of 5) exon (NM_175737, exon 4 of 5) 11195 NM_001024921 6133 Hs.412370 NM_000661 HPRD:04732 RPL9 L9|NPC-A-16 ribosomal protein L9 protein-coding 13-PTNLD9-TUMOR_peak_16853 chr15 27694321 27694442 + 5.01205 NA intron (NM_033223, intron 5 of 9) intron (NM_033223, intron 5 of 9) -287915 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 LOC101928869 - uncharacterized LOC101928869 ncRNA 13-PTNLD9-TUMOR_peak_21289 chr17 45013150 45013261 + 5.01205 NA 3' UTR (NM_001012511, exon 5 of 5) 3' UTR (NM_001012511, exon 5 of 5) 12719 NM_004287 9570 Hs.463278 NM_004287 HPRD:04937 GOSR2 Bos1|EPM6|GS27 golgi SNAP receptor complex member 2 protein-coding 13-PTNLD9-TUMOR_peak_11493 chr11 123554407 123554522 + 5.01205 NA Intergenic Intergenic -29149 NM_001040151 55800 Hs.4865 NM_018400 HPRD:10497 SCN3B ATFB16|BRGDA7|HSA243396|SCNB3 sodium channel, voltage-gated, type III, beta subunit protein-coding 13-PTNLD9-TUMOR_peak_14570 chr13 33978620 33978716 + 5.01205 NA intron (NM_001243476, intron 5 of 17) intron (NM_001243476, intron 5 of 17) -118767 NM_178006 90627 Hs.156551 NM_052851 HPRD:11607 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR-related lipid transfer (START) domain containing 13 protein-coding 13-PTNLD9-TUMOR_peak_17562 chr15 70473417 70473511 + 5.01205 NA Intergenic LTR16C|LTR|ERVL -83208 NM_001105192 7090 Hs.287362 NM_005078 HPRD:02558 TLE3 ESG|ESG3|GRG3|HsT18976 transducin-like enhancer of split 3 protein-coding 13-PTNLD9-TUMOR_peak_55779 chrX 46763270 46763378 + 5.01205 NA Intergenic Intergenic -4185 NR_046101 724087 Hs.679235 NR_046101 ENSG00000204904 CXorf31 - chromosome X open reading frame 31 ncRNA 13-PTNLD9-TUMOR_peak_52220 chr8 135814620 135814714 + 5.01205 NA Intergenic Intergenic -1817 NR_029666 407030 NR_029666 miRBase:MI0000441 MIR30B MIRN30B microRNA 30b ncRNA 13-PTNLD9-TUMOR_peak_19438 chr16 57426731 57426859 + 5.01205 NA Intergenic Intergenic -11884 NM_002987 6361 Hs.546294 NM_002987 HPRD:03309 CCL17 A-152E5.3|ABCD-2|SCYA17|TARC chemokine (C-C motif) ligand 17 protein-coding 13-PTNLD9-TUMOR_peak_26548 chr2 36020351 36020454 + 5.01205 NA Intergenic MIR3|SINE|MIR 562311 NR_037631 100288911 Hs.432924 NR_037631 LOC100288911 - uncharacterized LOC100288911 ncRNA 13-PTNLD9-TUMOR_peak_614 chr1 21223434 21223540 + 5.01205 NA intron (NM_001198802, intron 14 of 34) Tigger3b|DNA|TcMar-Tigger -110306 NM_016287 50809 Hs.142442 NM_016287 HPRD:11026 HP1BP3 HP1-BP74 heterochromatin protein 1, binding protein 3 protein-coding 13-PTNLD9-TUMOR_peak_2159 chr1 68651571 68651665 + 5.01205 NA intron (NM_001193334, intron 1 of 10) MER21B|LTR|ERVL -2325 NR_031664 100302279 NR_031664 MIR1262 MIRN1262|hsa-mir-1262 microRNA 1262 ncRNA 13-PTNLD9-TUMOR_peak_17532 chr15 69447170 69447264 + 5.01205 NA intron (NR_031680, intron 3 of 4) intron (NR_031680, intron 3 of 4) -5756 NM_015554 26035 Hs.183006 NM_015554 HPRD:07020 GLCE HSEPI glucuronic acid epimerase protein-coding 13-PTNLD9-TUMOR_peak_9998 chr11 61146314 61146417 + 5.01205 NA Intergenic L1MEg1|LINE|L1 -13467 NM_001173991 51259 Hs.26745 NM_016499 HPRD:14439 TMEM216 - transmembrane protein 216 protein-coding 13-PTNLD9-TUMOR_peak_29957 chr2 228331056 228331228 + 5.01205 NA Intergenic Intergenic -5706 NR_049888 100847081 NR_049888 miRBase:MI0019310 MIR5703 - microRNA 5703 ncRNA 13-PTNLD9-TUMOR_peak_4989 chr1 201866364 201866458 + 5.01205 NA 3' UTR (NM_012134, exon 3 of 3) 3' UTR (NM_012134, exon 3 of 3) 8606 NM_198149 149345 Hs.632471 NM_198149 HPRD:12729 SHISA4 C1orf40|TMEM58 shisa family member 4 protein-coding 13-PTNLD9-TUMOR_peak_34888 chr3 67346550 67346761 + 5.01205 NA Intergenic Intergenic 70767 NR_036234 100422941 NR_036234 MIR4272 - microRNA 4272 ncRNA 13-PTNLD9-TUMOR_peak_53616 chr9 74704797 74704956 + 5.01205 NA Intergenic Ricksha_c|DNA|MuDR -24635 NM_001242507 9615 Hs.494163 NM_004293 HPRD:08849 GDA CYPIN|GUANASE|NEDASIN guanine deaminase protein-coding 13-PTNLD9-TUMOR_peak_43928 chr6 16034680 16034856 + 5.01205 NA Intergenic MER68B|LTR|ERVL -94549 NM_013262 29116 Hs.484738 NM_013262 HPRD:17621 MYLIP IDOL|MIR myosin regulatory light chain interacting protein protein-coding 13-PTNLD9-TUMOR_peak_24927 chr19 39479771 39479865 + 5.01205 NA Intergenic Intergenic -13365 NR_104026 115290 Hs.531770 NM_024907 HPRD:16436 FBXO17 FBG4|FBX26|FBXO26|Fbx17 F-box protein 17 protein-coding 13-PTNLD9-TUMOR_peak_26929 chr2 53540856 53540965 + 5.01205 NA Intergenic AluSx|SINE|Alu -454019 NM_001008708 494143 Hs.585944 NM_001008708 HPRD:17418 CHAC2 - ChaC, cation transport regulator homolog 2 (E. coli) protein-coding 13-PTNLD9-TUMOR_peak_46526 chr6 167157613 167157719 + 5.01205 NA intron (NM_001006932, intron 2 of 21) intron (NM_001006932, intron 2 of 21) -116940 NM_021135 6196 Hs.655277 NM_021135 HPRD:03403 RPS6KA2 HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|pp90RSK3 ribosomal protein S6 kinase, 90kDa, polypeptide 2 protein-coding 13-PTNLD9-TUMOR_peak_34557 chr3 49644760 49644889 + 5.01205 NA intron (NM_003458, intron 1 of 11) intron (NM_003458, intron 1 of 11) 52902 NM_003458 8927 Hs.194684 NM_003458 HPRD:04933 BSN ZNF231 bassoon presynaptic cytomatrix protein protein-coding 13-PTNLD9-TUMOR_peak_9121 chr11 13010957 13011109 + 5.01205 NA promoter-TSS (NR_038904) promoter-TSS (NR_038904) 62 NR_038904 100506305 Hs.153408 NR_038904 ENSG00000251381 LINC00958 - long intergenic non-protein coding RNA 958 ncRNA 13-PTNLD9-TUMOR_peak_17577 chr15 71063306 71063405 + 5.01205 NA Intergenic Intergenic -7505 NM_018003 55075 Hs.108049 NM_018003 HPRD:11657 UACA NUCLING uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding 13-PTNLD9-TUMOR_peak_8124 chr10 99542727 99542821 + 5.01205 NA Intergenic Intergenic -11018 NM_003015 6425 Hs.279565 NM_003015 HPRD:09166 SFRP5 SARP3 secreted frizzled-related protein 5 protein-coding 13-PTNLD9-TUMOR_peak_38169 chr4 37075034 37075187 + 5.01205 NA Intergenic LTR12F|LTR|ERV1 168503 NR_039965 100616435 NR_039965 miRBase:MI0017449 MIR4801 - microRNA 4801 ncRNA 13-PTNLD9-TUMOR_peak_14127 chr12 122492357 122492451 + 5.01205 NA intron (NM_001024808, intron 4 of 5) intron (NM_001024808, intron 4 of 5) -24230 NM_014938 22877 Hs.437153 NM_014938 MLXIP MIR|MONDOA|bHLHe36 MLX interacting protein protein-coding 13-PTNLD9-TUMOR_peak_34680 chr3 53189157 53189259 + 5.01205 NA Intergenic Intergenic -6015 NM_212539 5580 Hs.155342 NM_006254 HPRD:01501 PRKCD CVID9|MAY1|PKCD|nPKC-delta protein kinase C, delta protein-coding 13-PTNLD9-TUMOR_peak_41885 chr5 123395026 123395120 + 5.01205 NA TTS (NR_125774) TTS (NR_125774) 379140 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 13-PTNLD9-TUMOR_peak_5846 chr1 232840604 232840740 + 5.01205 NA Intergenic Intergenic 37789 NR_110683 101927683 Hs.520568 NR_110683 ENSG00000236497 LOC101927683 - uncharacterized LOC101927683 ncRNA 13-PTNLD9-TUMOR_peak_44624 chr6 32590343 32590474 + 5.01205 NA Intergenic Intergenic -14775 NM_002122 3117 Hs.387679 NM_002122 HPRD:06765 HLA-DQA1 CD|CELIAC1|DQ-A1|GSE|HLA-DQA major histocompatibility complex, class II, DQ alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_56493 chrX 131135299 131135406 + 5.01205 NA Intergenic Intergenic -21893 NM_001042453 51765 Hs.444247 NM_016542 HPRD:06663 MST4 MASK serine/threonine protein kinase MST4 protein-coding 13-PTNLD9-TUMOR_peak_19814 chr16 78036980 78037081 + 5.01205 NA Intergenic Intergenic -19413 NM_005752 10143 Hs.177936 NM_005752 HPRD:13072 CLEC3A CLECSF1 C-type lectin domain family 3, member A protein-coding 13-PTNLD9-TUMOR_peak_9118 chr11 12910449 12910548 + 5.01205 NA intron (NM_021961, intron 9 of 12) intron (NM_021961, intron 9 of 12) 100597 NR_038904 100506305 Hs.153408 NR_038904 ENSG00000251381 LINC00958 - long intergenic non-protein coding RNA 958 ncRNA 13-PTNLD9-TUMOR_peak_38521 chr4 65650044 65650142 + 5.01205 NA Intergenic MIRb|SINE|MIR 220125 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LOC401134 - uncharacterized LOC401134 ncRNA 13-PTNLD9-TUMOR_peak_56296 chrX 103680127 103680308 + 5.01205 NA Intergenic Intergenic -130779 NM_017416 26280 Hs.675519 NM_017416 HPRD:02231 IL1RAPL2 IL-1R9|IL1R9|IL1RAPL-2|TIGIRR-1 interleukin 1 receptor accessory protein-like 2 protein-coding 13-PTNLD9-TUMOR_peak_54418 chr9 112866894 112867069 + 5.01205 NA intron (NM_001004065, intron 1 of 3) intron (NM_001004065, intron 1 of 3) -20800 NM_001136562 11217 Hs.591908 NM_001004065 ENSG00000241978 AKAP2 AKAP-2|AKAPKL|PRKA2 A kinase (PRKA) anchor protein 2 protein-coding 13-PTNLD9-TUMOR_peak_34437 chr3 46530332 46530452 + 5.01205 NA Intergenic LTR41B|LTR|ERVL -9093 NM_031440 83597 Hs.196584 NM_031440 RTP3 LTM1|TMEM7|Z3CXXC3 receptor (chemosensory) transporter protein 3 protein-coding 13-PTNLD9-TUMOR_peak_18483 chr16 10428291 10428393 + 5.01205 NA Intergenic AluSx1|SINE|Alu -51570 NM_001256160 80063 Hs.513343 NM_024997 HPRD:16517 ATF7IP2 MCAF2 activating transcription factor 7 interacting protein 2 protein-coding 13-PTNLD9-TUMOR_peak_20846 chr17 31270706 31270800 + 5.01205 NA Intergenic Intergenic 15825 NM_001033504 26022 Hs.3447 NM_015544 HPRD:13171 TMEM98 - transmembrane protein 98 protein-coding 13-PTNLD9-TUMOR_peak_55795 chrX 47341996 47342247 + 5.01205 NA 5' UTR (NM_007130, exon 1 of 5) 5' UTR (NM_007130, exon 1 of 5) 224 NM_007130 7592 Hs.496074 NM_007130 HPRD:02447 ZNF41 MRX89 zinc finger protein 41 protein-coding 13-PTNLD9-TUMOR_peak_32021 chr21 26100530 26100624 + 5.01205 NA Intergenic Intergenic -112287 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LOC339622 - uncharacterized LOC339622 ncRNA 13-PTNLD9-TUMOR_peak_6461 chr10 11594284 11594453 + 5.01205 NA intron (NM_014688, intron 2 of 14) intron (NM_014688, intron 2 of 14) -20089 NM_001080491 9712 Hs.498661 NM_014688 ENSG00000148429 USP6NL RNTRE|TRE2NL|USP6NL-IT1 USP6 N-terminal like protein-coding 13-PTNLD9-TUMOR_peak_49942 chr8 1649562 1649716 + 5.01205 NA 3' UTR (NM_004745, exon 12 of 12) 3' UTR (NM_004745, exon 12 of 12) -62231 NM_018941 2055 Hs.127675 NM_018941 HPRD:06383 CLN8 C8orf61|EPMR ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation) protein-coding 13-PTNLD9-TUMOR_peak_14914 chr13 80510882 80510983 + 5.01205 NA Intergenic Intergenic 64211 NR_120413 101927195 Hs.342412 NR_120413 ENSG00000229175 LINC00382 TCONS_00021500 long intergenic non-protein coding RNA 382 ncRNA 13-PTNLD9-TUMOR_peak_13461 chr12 90341792 90341953 + 5.01205 NA Intergenic Intergenic 239140 NR_028138 338758 Hs.601766 NR_028138 ENSG00000271614 LINC00936 - long intergenic non-protein coding RNA 936 ncRNA 13-PTNLD9-TUMOR_peak_9240 chr11 18479108 18479274 + 5.01205 NA intron (NM_001144071, intron 2 of 7) intron (NM_001144071, intron 2 of 7) 1817 NM_144972 160287 Hs.668877 NM_144972 HPRD:13980 LDHAL6A LDH6A lactate dehydrogenase A-like 6A protein-coding 13-PTNLD9-TUMOR_peak_32349 chr21 40486818 40486912 + 5.01205 NA Intergenic Intergenic 68575 NM_003720 8624 Hs.473838 NM_003720 HPRD:05598 PSMG1 C21LRP|DSCR2|LRPC21|PAC-1|PAC1 proteasome (prosome, macropain) assembly chaperone 1 protein-coding 13-PTNLD9-TUMOR_peak_50039 chr8 8276276 8276482 + 5.01205 NA Intergenic Intergenic -37035 NM_001080826 157285 Hs.583863 NM_001080826 ENSG00000182319 SGK223 PRAGMIN homolog of rat pragma of Rnd2 protein-coding 13-PTNLD9-TUMOR_peak_11086 chr11 104643817 104643941 + 5.01205 NA Intergenic Intergenic 125518 NR_034070 100506742 Hs.476989 NM_001191016 ENSG00000204403 CASP12 CASP-12|CASP12P1 caspase 12 (gene/pseudogene) protein-coding 13-PTNLD9-TUMOR_peak_19473 chr16 58256515 58256620 + 5.01205 NA Intergenic Intergenic -24785 NM_001896 1459 Hs.82201 NM_001896 HPRD:00279 CSNK2A2 CK2A2|CSNK2A1 casein kinase 2, alpha prime polypeptide protein-coding 13-PTNLD9-TUMOR_peak_22505 chr18 6624352 6624448 + 5.01205 NA Intergenic Intergenic 112985 NR_120518 100130480 Hs.646267 NM_001243517 ENSG00000265944 LINC01387 C18orf64 long intergenic non-protein coding RNA 1387 ncRNA 13-PTNLD9-TUMOR_peak_17243 chr15 48104716 48104856 + 5.01205 NA intron (NR_120336, intron 3 of 4) intron (NR_120336, intron 3 of 4) 33647 NR_120336 101928442 Hs.242804 NR_120336 LINC01491 - long intergenic non-protein coding RNA 1491 ncRNA 13-PTNLD9-TUMOR_peak_19503 chr16 62259777 62259969 + 5.01205 NA Intergenic MER66C|LTR|ERV1 -189134 NM_001796 1006 Hs.368322 NM_001796 HPRD:04306 CDH8 Nbla04261 cadherin 8, type 2 protein-coding 13-PTNLD9-TUMOR_peak_44032 chr6 19472574 19472735 + 5.01205 NA Intergenic Intergenic -291943 NR_110860 101928519 Hs.551771 NR_110860 LOC101928519 - uncharacterized LOC101928519 ncRNA 13-PTNLD9-TUMOR_peak_19332 chr16 52084439 52084533 + 5.01205 NA intron (NM_001242473, intron 2 of 5) MLT1H|LTR|ERVL-MaLR 23361 NM_001242473 388276 Hs.534669 NM_001242473 ENSG00000261190 C16orf97 - chromosome 16 open reading frame 97 protein-coding 13-PTNLD9-TUMOR_peak_44791 chr6 35754681 35754840 + 5.01205 NA intron (NM_001010886, intron 1 of 2) CpG 5929 NM_001010886 340204 Hs.131296 NM_001010886 HPRD:17356 CLPSL1 C6orf127|ESP32|dJ510O8.6 colipase-like 1 protein-coding 13-PTNLD9-TUMOR_peak_46462 chr6 161333614 161333814 + 5.01205 NA Intergenic Intergenic -79045 NM_005922 4216 Hs.390428 NM_005922 HPRD:03886 MAP3K4 MAPKKK4|MEKK 4|MEKK4|MTK1|PRO0412 mitogen-activated protein kinase kinase kinase 4 protein-coding 13-PTNLD9-TUMOR_peak_55872 chrX 52626323 52626417 + 5.01205 NA Intergenic Intergenic -25615 NR_027250 280659 Hs.694472 NM_174961 HPRD:06728 SSX8 - synovial sarcoma, X breakpoint 8 pseudo 13-PTNLD9-TUMOR_peak_45714 chr6 90218770 90218875 + 5.01205 NA intron (NM_001242813, intron 1 of 14) intron (NM_001242813, intron 1 of 14) -53215 NM_001242811 22881 Hs.702213 NM_014942 HPRD:09798 ANKRD6 - ankyrin repeat domain 6 protein-coding 13-PTNLD9-TUMOR_peak_24961 chr19 40187226 40187344 + 5.01205 NA Intergenic Intergenic -7661 NM_020129 56891 Hs.24236 NM_020129 HPRD:06268 LGALS14 CLC2|PPL13 lectin, galactoside-binding, soluble, 14 protein-coding 13-PTNLD9-TUMOR_peak_30419 chr20 11098516 11098610 + 5.01205 NA Intergenic Intergenic 155468 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 13-PTNLD9-TUMOR_peak_42213 chr5 137155595 137155773 + 5.01205 NA Intergenic Intergenic 18802 NR_002713 4888 Hs.643466 NR_002713 ENSG00000226306 NPY6R NPY1RL|NPY6RP|PP2|Y2B neuropeptide Y receptor Y6 (pseudogene) pseudo 13-PTNLD9-TUMOR_peak_51021 chr8 60953559 60953678 + 5.01205 NA Intergenic L3|LINE|CR1 240336 NM_004056 767 Hs.654388 NM_004056 CA8 CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase VIII protein-coding 13-PTNLD9-TUMOR_peak_41867 chr5 121917474 121917575 + 5.01205 NA Intergenic LTR16B1|LTR|ERVL -102742 NR_051996 153163 Hs.679757 NR_051996 ENSG00000250328 MGC32805 - uncharacterized LOC153163 ncRNA 13-PTNLD9-TUMOR_peak_18084 chr15 100583399 100583544 + 5.01205 NA intron (NM_139057, intron 18 of 21) intron (NM_139057, intron 18 of 21) -236339 NR_003260 196968 Hs.567763 NM_194295 HPRD:13192 DNM1P46 C15orf51|DNM1DN14.2|DNM1DN14@ DNM1 pseudogene 46 pseudo 13-PTNLD9-TUMOR_peak_18459 chr16 9477990 9478255 + 5.01205 NA Intergenic Intergenic 149348 NR_036166 100422920 NR_036166 miRBase:MI0014244 MIR548X - microRNA 548x ncRNA 13-PTNLD9-TUMOR_peak_39266 chr4 124373874 124373968 + 5.01205 NA Intergenic Intergenic 53276 NM_005841 10252 Hs.744854 NM_005841 HPRD:06782 SPRY1 hSPRY1 sprouty homolog 1, antagonist of FGF signaling (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_54379 chr9 111380111 111380205 + 5.01205 NA Intergenic L2c|LINE|L2 238117 NM_006686 10880 Hs.534390 NM_006686 ACTL7B Tact1 actin-like 7B protein-coding 13-PTNLD9-TUMOR_peak_31528 chr20 51505875 51505996 + 5.01205 NA Intergenic L2a|LINE|L2 -83011 NM_173485 128553 Hs.473117 NM_173485 HPRD:10730 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 13-PTNLD9-TUMOR_peak_35055 chr3 82030113 82030289 + 5.01205 NA Intergenic Intergenic -219251 NM_000158 2632 Hs.436062 NM_000158 HPRD:01985 GBE1 APBD|GBE|GSD4 glucan (1,4-alpha-), branching enzyme 1 protein-coding 13-PTNLD9-TUMOR_peak_56379 chrX 115085229 115085491 + 5.01205 NA Intergenic CpG -216598 NM_000686 186 Hs.405348 NM_000686 HPRD:02071 AGTR2 AT2|ATGR2|MRX88 angiotensin II receptor, type 2 protein-coding 13-PTNLD9-TUMOR_peak_11811 chr12 2202116 2202250 + 5.01205 NA intron (NM_001129832, intron 1 of 47) intron (NM_001129832, intron 1 of 47) 39732 NM_199460 775 Hs.118262 NM_000719 CACNA1C CACH2|CACN2|CACNL1A1|CCHL1A1|CaV1.2|LQT8|TS calcium channel, voltage-dependent, L type, alpha 1C subunit protein-coding 13-PTNLD9-TUMOR_peak_12454 chr12 31972426 31972531 + 5.01205 NA Intergenic Intergenic -27303 NM_001013699 440093 Hs.448697 NM_001013699 HPRD:18443 H3F3C H3.5 H3 histone, family 3C protein-coding 13-PTNLD9-TUMOR_peak_18777 chr16 23336089 23336393 + 5.01205 NA intron (NM_000336, intron 1 of 12) intron (NM_000336, intron 1 of 12) 22650 NM_000336 6338 Hs.414614 NM_000336 HPRD:02861 SCNN1B BESC1|ENaCb|ENaCbeta|SCNEB sodium channel, non-voltage-gated 1, beta subunit protein-coding 13-PTNLD9-TUMOR_peak_16223 chr14 73110090 73110225 + 5.01205 NA intron (NM_001280542, intron 8 of 10) intron (NM_001280542, intron 8 of 10) 126629 NR_106994 102465832 NR_106994 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 13-PTNLD9-TUMOR_peak_7612 chr10 71488104 71488231 + 5.01205 NA Intergenic MIRb|SINE|MIR -73477 NM_080802 1305 Hs.695934 NM_005203 HPRD:00383 COL13A1 COLXIIIA1 collagen, type XIII, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_38541 chr4 69018219 69018369 + 5.01205 NA Intergenic Intergenic -22707 NM_207407 389208 Hs.677557 NM_207407 HPRD:16908 TMPRSS11F - transmembrane protease, serine 11F protein-coding 13-PTNLD9-TUMOR_peak_8880 chr11 4079518 4079622 + 5.01205 NA intron (NM_001277962, intron 4 of 12) intron (NM_001277962, intron 4 of 12) -36354 NM_001033 6240 Hs.445705 NM_001033 HPRD:01588 RRM1 R1|RIR1|RR1 ribonucleotide reductase M1 protein-coding 13-PTNLD9-TUMOR_peak_42874 chr5 160617161 160617413 + 5.01205 NA Intergenic MLT1K|LTR|ERVL-MaLR -251654 NR_027111 285629 Hs.554279 NR_027111 ENSG00000253417 LOC285629 - uncharacterized LOC285629 ncRNA 13-PTNLD9-TUMOR_peak_21353 chr17 46318502 46318596 + 5.01205 NA intron (NM_003726, intron 4 of 12) intron (NM_003726, intron 4 of 12) -84676 NR_031607 100302211 NR_031607 MIR1203 MIRN1203|hsa-mir-1203 microRNA 1203 ncRNA 13-PTNLD9-TUMOR_peak_46254 chr6 148762335 148762434 + 5.01205 NA intron (NM_015278, intron 4 of 19) intron (NM_015278, intron 4 of 19) 98655 NM_015278 23328 Hs.193133 NM_015278 HPRD:06408 SASH1 SH3D6A|dJ323M4|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_42836 chr5 159318535 159318746 + 5.01205 NA Intergenic Intergenic -20249 NR_109891 101927766 Hs.638568 NR_109891 ENSG00000253311 LOC101927766 - uncharacterized LOC101927766 ncRNA 13-PTNLD9-TUMOR_peak_36303 chr3 147417034 147417143 + 5.01205 NA Intergenic Intergenic 277974 NR_121655 440982 Hs.535724 NR_121655 LOC440982 - uncharacterized LOC440982 ncRNA 13-PTNLD9-TUMOR_peak_13373 chr12 76050611 76050705 + 5.01205 NA Intergenic Intergenic -145240 NM_007043 11103 Hs.645517 NM_007043 HPRD:11027 KRR1 HRB2|RIP-1 KRR1, small subunit (SSU) processome component, homolog (yeast) protein-coding 13-PTNLD9-TUMOR_peak_15662 chr14 48610143 48610237 + 5.01205 NA Intergenic Intergenic -345973 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 13-PTNLD9-TUMOR_peak_44092 chr6 22043603 22043826 + 5.01205 NA intron (NR_015410, intron 7 of 11) intron (NR_015410, intron 7 of 11) 103708 NR_034143 729177 Hs.730673 NR_034143 ENSG00000260455 CASC14 - cancer susceptibility candidate 14 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_53950 chr9 92750900 92750994 + 5.01205 NA Intergenic Intergenic 19249 NR_109791 101927847 Hs.584312 NR_109791 LOC101927847 - uncharacterized LOC101927847 ncRNA 13-PTNLD9-TUMOR_peak_27005 chr2 60901768 60901915 + 5.01205 NA Intergenic Intergenic -81524 NM_022894 64895 Hs.387471 NM_022894 HPRD:11420 PAPOLG - poly(A) polymerase gamma protein-coding 13-PTNLD9-TUMOR_peak_46171 chr6 142277269 142277415 + 5.01205 NA Intergenic LTR38-int|LTR|ERV1 132594 NM_002511 4829 Hs.654478 NM_002511 HPRD:01211 NMBR BB1 neuromedin B receptor protein-coding 13-PTNLD9-TUMOR_peak_16314 chr14 77342488 77342582 + 5.01205 NA Intergenic Intergenic 49810 NM_194287 145497 Hs.147276 NM_194287 HPRD:12621 LRRC74A C14orf166B|LRRC74 leucine rich repeat containing 74A protein-coding 13-PTNLD9-TUMOR_peak_4879 chr1 198189702 198189852 + 5.01205 NA intron (NM_133494, intron 1 of 9) intron (NM_133494, intron 1 of 9) 63669 NM_133494 140609 Hs.24119 NM_133494 HPRD:06027 NEK7 - NIMA-related kinase 7 protein-coding 13-PTNLD9-TUMOR_peak_56546 chrX 135608272 135608366 + 5.01205 NA Intergenic Intergenic -5992 NM_016267 51442 Hs.496843 NM_016267 HPRD:06751 VGLL1 TDU|VGL1 vestigial-like family member 1 protein-coding 13-PTNLD9-TUMOR_peak_9789 chr11 49547871 49548046 + 5.01205 NA Intergenic Intergenic -32122 NR_027044 440040 Hs.655746 NR_027044 ENSG00000205035 LOC440040 - glutamate receptor, metabotropic 5 pseudogene pseudo 13-PTNLD9-TUMOR_peak_51037 chr8 62357209 62357351 + 5.01205 NA intron (NM_173519, intron 3 of 5) MER74A|LTR|ERVL 156755 NM_173519 157807 Hs.591874 NM_173519 HPRD:14581 CLVS1 CRALBPL|RLBP1L1 clavesin 1 protein-coding 13-PTNLD9-TUMOR_peak_56563 chrX 140499676 140499770 + 5.01205 NA Intergenic Intergenic -91120 NR_037183 619455 Hs.590784 NR_037183 SPANXA2-OT1 CXorf18 SPANXA2 overlapping transcript 1 ncRNA 13-PTNLD9-TUMOR_peak_43715 chr6 8634211 8634311 + 5.01205 NA intron (NR_038980, intron 3 of 4) intron (NR_038980, intron 3 of 4) -18181 NR_004855 728655 Hs.214343 NR_004855 ENSG00000251164 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 13-PTNLD9-TUMOR_peak_47532 chr7 55141849 55141950 + 5.01205 NA intron (NM_201284, intron 1 of 15) intron (NM_201284, intron 1 of 15) 55174 NM_005228 1956 Hs.488293 NM_005228 HPRD:00579 EGFR ERBB|ERBB1|HER1|PIG61|mENA epidermal growth factor receptor protein-coding 13-PTNLD9-TUMOR_peak_807 chr1 27459230 27459380 + 5.01205 NA intron (NM_003047, intron 1 of 11) intron (NM_003047, intron 1 of 11) 22316 NR_046474 6548 Hs.91389 NM_003047 HPRD:00123 SLC9A1 APNH|NHE-1|NHE1|PPP1R143 solute carrier family 9, subfamily A (NHE1, cation proton antiporter 1), member 1 protein-coding 13-PTNLD9-TUMOR_peak_19733 chr16 72206316 72206410 + 5.01205 NA promoter-TSS (NM_001160213) promoter-TSS (NM_001160213) -14 NM_001160213 83449 Hs.714939 NM_031293 HPRD:10157 PMFBP1 - polyamine modulated factor 1 binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_16463 chr14 93007104 93007304 + 5.01205 NA intron (NM_024832, intron 1 of 9) MIR3|SINE|MIR 27079 NM_024832 79890 Hs.326822 NM_024832 HPRD:11494 RIN3 - Ras and Rab interactor 3 protein-coding 13-PTNLD9-TUMOR_peak_31766 chr20 60957920 60958014 + 5.01205 NA Intergenic Intergenic -4154 NM_001024 6227 Hs.190968 NM_001024 HPRD:01605 RPS21 HLDF|S21 ribosomal protein S21 protein-coding 13-PTNLD9-TUMOR_peak_8538 chr10 126043751 126043875 + 5.01205 NA Intergenic Intergenic 63732 NM_000274 4942 Hs.523332 NM_000274 HPRD:02021 OAT GACR|HOGA|OATASE|OKT ornithine aminotransferase protein-coding 13-PTNLD9-TUMOR_peak_6774 chr10 28809885 28810083 + 5.01205 NA non-coding (NR_033805, exon 3 of 3) non-coding (NR_033805, exon 3 of 3) 11299 NR_033805 220906 Hs.403253 NR_033805 ENSG00000254635 WAC-AS1 - WAC antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_46194 chr6 143832761 143832920 + 5.01205 NA 5' UTR (NM_032020, exon 1 of 7) 5' UTR (NM_032020, exon 1 of 7) 180 NM_032020 2519 Hs.17680 NM_032020 HPRD:00649 FUCA2 dJ20N2.5 fucosidase, alpha-L- 2, plasma protein-coding 13-PTNLD9-TUMOR_peak_6770 chr10 28664788 28664920 + 5.01205 NA Intergenic Intergenic -86575 NR_107053 102465880 NR_107053 MIR8086 hsa-mir-8086 microRNA 8086 ncRNA 13-PTNLD9-TUMOR_peak_56581 chrX 148517861 148518025 + 5.01205 NA Intergenic L1PA3|LINE|L1 68941 NM_000202 3423 Hs.460960 NM_000202 HPRD:02402 IDS MPS2|SIDS iduronate 2-sulfatase protein-coding 13-PTNLD9-TUMOR_peak_11015 chr11 96840445 96840598 + 5.01205 NA Intergenic L2a|LINE|L2 -600480 NR_047481 100874053 Hs.742044 NR_047481 JRKL-AS1 - JRKL antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_3028 chr1 117724408 117724502 + 5.01205 NA intron (NM_001253850, intron 1 of 4) intron (NM_001253850, intron 1 of 4) 22003 NM_001253849 79679 Hs.546434 NM_024626 HPRD:06429 VTCN1 B7-H4|B7H4|B7S1|B7X|B7h.5|PRO1291|VCTN1 V-set domain containing T cell activation inhibitor 1 protein-coding 13-PTNLD9-TUMOR_peak_45600 chr6 82648204 82648298 + 5.01205 NA Intergenic Intergenic -185823 NM_017633 55603 Hs.10784 NM_017633 HPRD:13311 FAM46A C6orf37|XTP11 family with sequence similarity 46, member A protein-coding 13-PTNLD9-TUMOR_peak_8422 chr10 119237849 119238022 + 5.01205 NA Intergenic L2c|LINE|L2 -64021 NM_001165924 2018 Hs.202095 NM_004098 HPRD:02495 EMX2 - empty spiracles homeobox 2 protein-coding 13-PTNLD9-TUMOR_peak_12666 chr12 47578730 47578824 + 5.01205 NA intron (NM_001281429, intron 2 of 2) MLT1L|LTR|ERVL-MaLR -2818 NR_039847 100616486 NR_039847 miRBase:MI0017331 MIR4698 - microRNA 4698 ncRNA 13-PTNLD9-TUMOR_peak_14851 chr13 73599458 73599557 + 5.01205 NA Intergenic Intergenic -29607 NM_001286818 688 Hs.508234 NM_001730 HPRD:04212 KLF5 BTEB2|CKLF|IKLF Kruppel-like factor 5 (intestinal) protein-coding 13-PTNLD9-TUMOR_peak_6866 chr10 31938964 31939058 + 5.01205 NA Intergenic Intergenic 258843 NM_001270699 94134 Hs.499264 NM_018287 HPRD:06446 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 13-PTNLD9-TUMOR_peak_38123 chr4 25669688 25669835 + 5.01205 NA intron (NM_001177998, intron 6 of 12) intron (NM_001177998, intron 6 of 12) 11675 NM_001177999 10568 Hs.479372 NM_006424 HPRD:07251 SLC34A2 NAPI-3B|NAPI-IIb|NPTIIb solute carrier family 34 (type II sodium/phosphate contransporter), member 2 protein-coding 13-PTNLD9-TUMOR_peak_6194 chr1 247692252 247692422 + 5.01205 NA intron (NR_027309, intron 1 of 3) ERVL-E-int|LTR|ERVL 1769 NR_027309 148824 Hs.23491 NR_027309 GCSAML-AS1 - GCSAML antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_9097 chr11 12411375 12411474 + 5.01205 NA intron (NM_018222, intron 1 of 12) intron (NM_018222, intron 1 of 12) 12398 NM_018222 55742 Hs.432914 NM_018222 PARVA CH-ILKBP|MXRA2 parvin, alpha protein-coding 13-PTNLD9-TUMOR_peak_8371 chr10 115506003 115506109 + 5.01205 NA Intergenic L2|LINE|L2 -5157 NM_001193435 79949 Hs.228320 NM_024889 HPRD:12591 PLEKHS1 C10orf81|HEL185|bA211N11.2 pleckstrin homology domain containing, family S member 1 protein-coding 13-PTNLD9-TUMOR_peak_19397 chr16 56366790 56366957 + 5.01205 NA intron (NM_138736, intron 4 of 7) intron (NM_138736, intron 4 of 7) 87441 NR_037499 100500891 NR_037499 MIR3935 - microRNA 3935 ncRNA 13-PTNLD9-TUMOR_peak_17567 chr15 70641640 70641734 + 5.01205 NA Intergenic MIR3|SINE|MIR -251431 NM_001105192 7090 Hs.287362 NM_005078 HPRD:02558 TLE3 ESG|ESG3|GRG3|HsT18976 transducin-like enhancer of split 3 protein-coding 13-PTNLD9-TUMOR_peak_18375 chr16 4538161 4538255 + 5.01205 NA intron (NM_001127204, intron 2 of 6) intron (NM_001127204, intron 2 of 6) -7612 NM_001286270 3163 Hs.284279 NM_002134 HPRD:00783 HMOX2 HO-2 heme oxygenase (decycling) 2 protein-coding 13-PTNLD9-TUMOR_peak_2209 chr1 75878442 75878536 + 5.01205 NA intron (NM_001130058, intron 2 of 23) MER44D|DNA|TcMar-Tigger 198310 NM_001130058 204962 Hs.654821 NM_152697 HPRD:14580 SLC44A5 CTL5 solute carrier family 44, member 5 protein-coding 13-PTNLD9-TUMOR_peak_46957 chr7 17762511 17762619 + 5.01205 NA Intergenic Intergenic -164032 NR_110013 101927630 Hs.583400 NR_110013 LOC101927630 - uncharacterized LOC101927630 ncRNA 13-PTNLD9-TUMOR_peak_6376 chr10 5757553 5757796 + 5.01205 NA intron (NM_017782, intron 2 of 20) AluSc5|SINE|Alu 30873 NM_017782 54906 Hs.610717 NM_017782 ENSG00000108021 FAM208B C10orf18|bA318E3.2 family with sequence similarity 208, member B protein-coding 13-PTNLD9-TUMOR_peak_35911 chr3 130682852 130682958 + 5.01205 NA exon (NM_014382, exon 12 of 27) exon (NM_014382, exon 12 of 27) -62789 NM_024800 79858 Hs.657336 NM_024800 HPRD:14821 NEK11 - NIMA-related kinase 11 protein-coding 13-PTNLD9-TUMOR_peak_20216 chr17 1316745 1316915 + 5.01205 NA Intergenic MLT1H|LTR|ERVL-MaLR -13274 NM_006761 7531 Hs.513851 NM_006761 HPRD:05457 YWHAE 14-3-3E|HEL2|KCIP-1|MDCR|MDS tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon protein-coding 13-PTNLD9-TUMOR_peak_46160 chr6 140085887 140086019 + 5.01205 NA Intergenic Intergenic -6257 NR_038399 100132735 Hs.62646 NR_038399 LOC100132735 - uncharacterized LOC100132735 ncRNA 13-PTNLD9-TUMOR_peak_20281 chr17 3506845 3507052 + 5.01205 NA intron (NM_080704, intron 2 of 16) intron (NM_080704, intron 2 of 16) 5757 NM_080704 7442 Hs.579217 NM_018727 HPRD:03648 TRPV1 VR1 transient receptor potential cation channel, subfamily V, member 1 protein-coding 13-PTNLD9-TUMOR_peak_14265 chr12 126199608 126199705 + 5.01205 NA Intergenic Intergenic 92658 NM_001286219 114795 Hs.524838 NM_052907 TMEM132B - transmembrane protein 132B protein-coding 13-PTNLD9-TUMOR_peak_38894 chr4 92279821 92279977 + 5.01205 NA intron (NM_001145065, intron 10 of 10) Harlequin-int|LTR|ERV1 -945651 NM_001286838 2895 Hs.162727 NM_001510 HPRD:06781 GRID2 GluD2 glutamate receptor, ionotropic, delta 2 protein-coding 13-PTNLD9-TUMOR_peak_474 chr1 14344325 14344447 + 5.01205 NA Intergenic Intergenic 268510 NM_001007257 7799 Hs.371823 NM_012231 HPRD:03120 PRDM2 HUMHOXY1|KMT8|MTB-ZF|RIZ|RIZ1|RIZ2 PR domain containing 2, with ZNF domain protein-coding 13-PTNLD9-TUMOR_peak_9361 chr11 27350252 27350410 + 5.01205 NA Intergenic Intergenic 34464 NM_030771 91057 Hs.143733 NM_030771 HPRD:14868 CCDC34 NY-REN-41|RAMA3 coiled-coil domain containing 34 protein-coding 13-PTNLD9-TUMOR_peak_29790 chr2 217363434 217363542 + 5.01205 NA promoter-TSS (NM_000998) promoter-TSS (NM_000998) -32 NM_000998 6168 Hs.433701 NM_000998 RPL37A L37A ribosomal protein L37a protein-coding 13-PTNLD9-TUMOR_peak_8528 chr10 125519260 125519370 + 5.01205 NA intron (NM_198148, intron 11 of 13) intron (NM_198148, intron 11 of 13) 93444 NM_153442 2849 Hs.12751 NM_153442 GPR26 - G protein-coupled receptor 26 protein-coding 13-PTNLD9-TUMOR_peak_18280 chr16 2924987 2925087 + 5.01205 NA Intergenic Intergenic -8159 NM_001142499 114984 Hs.534525 NM_138439 HPRD:14007 FLYWCH2 - FLYWCH family member 2 protein-coding 13-PTNLD9-TUMOR_peak_11187 chr11 111383684 111383862 + 5.01205 NA promoter-TSS (NR_029840) promoter-TSS (NR_029840) 110 NR_029839 407041 NR_029839 miRBase:MI0000742 MIR34B MIRN34B|miRNA34B microRNA 34b ncRNA 13-PTNLD9-TUMOR_peak_51016 chr8 60529992 60530125 + 5.01205 NA Intergenic Intergenic -498291 NM_014729 9760 Hs.491805 NM_014729 HPRD:12113 TOX TOX1 thymocyte selection-associated high mobility group box protein-coding 13-PTNLD9-TUMOR_peak_50590 chr8 35344663 35344769 + 5.01205 NA intron (NM_080872, intron 1 of 16) intron (NM_080872, intron 1 of 16) 251741 NM_080872 137970 Hs.238889 NM_080872 HPRD:11661 UNC5D PRO34692|Unc5h4 unc-5 homolog D (C. elegans) protein-coding 13-PTNLD9-TUMOR_peak_46183 chr6 143223952 143224078 + 5.01205 NA intron (NM_006734, intron 1 of 9) intron (NM_006734, intron 1 of 9) 42323 NM_006734 3097 Hs.510172 NM_006734 HPRD:00881 HIVEP2 HIV-EP2|MBP-2|MIBP1|SHN2|ZAS2|ZNF40B human immunodeficiency virus type I enhancer binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_35159 chr3 98519400 98519494 + 5.01205 NA exon (NM_080927, exon 15 of 16) exon (NM_080927, exon 15 of 16) 67899 NM_006100 10402 Hs.148716 NM_006100 HPRD:06195 ST3GAL6 SIAT10|ST3GALVI ST3 beta-galactoside alpha-2,3-sialyltransferase 6 protein-coding 13-PTNLD9-TUMOR_peak_50208 chr8 19615406 19615500 + 5.01205 NA Intergenic Intergenic -59465 NM_018142 55174 Hs.512627 NM_018142 HPRD:07686 INTS10 C8orf35|INT10 integrator complex subunit 10 protein-coding 13-PTNLD9-TUMOR_peak_54629 chr9 123239841 123239942 + 5.01205 NA intron (NM_001011649, intron 14 of 36) intron (NM_001011649, intron 14 of 36) 102557 NR_073556 55755 Hs.269560 NM_018249 HPRD:09740 CDK5RAP2 C48|Cep215|MCPH3 CDK5 regulatory subunit associated protein 2 protein-coding 13-PTNLD9-TUMOR_peak_43447 chr6 2275842 2276005 + 5.01205 NA intron (NR_046229, intron 3 of 6) intron (NR_046229, intron 3 of 6) 29936 NR_046229 100508120 Hs.188825 NR_046229 GMDS-AS1 - GMDS antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_17993 chr15 91807553 91807647 + 5.01205 NA intron (NM_014848, intron 7 of 13) MER57E2|LTR|ERV1 164061 NM_014848 9899 Hs.21754 NM_014848 HPRD:11765 SV2B HsT19680 synaptic vesicle glycoprotein 2B protein-coding 13-PTNLD9-TUMOR_peak_48601 chr7 101252149 101252243 + 5.01205 NA Intergenic Intergenic 20380 NM_138403 93408 Hs.247831 NM_138403 HPRD:17620 MYL10 MYLC2PL|PLRLC myosin, light chain 10, regulatory protein-coding 13-PTNLD9-TUMOR_peak_38452 chr4 56975109 56975310 + 5.01205 NA Intergenic LTR13A|LTR|ERVK -61152 NM_020722 57482 Hs.596667 NM_020722 KIAA1211 - KIAA1211 protein-coding 13-PTNLD9-TUMOR_peak_27135 chr2 67156899 67157304 + 5.01205 NA intron (NR_110169, intron 1 of 4) intron (NR_110169, intron 1 of 4) -7479 NR_110600 102724321 Hs.146803 NR_110600 LOC102724321 - uncharacterized LOC102724321 ncRNA 13-PTNLD9-TUMOR_peak_504 chr1 16067974 16068142 + 5.01205 NA promoter-TSS (NM_001013641) promoter-TSS (NM_001013641) -929 NM_001013641 388595 Hs.454828 NM_001013641 HPRD:18383 TMEM82 - transmembrane protein 82 protein-coding 13-PTNLD9-TUMOR_peak_32240 chr21 36950701 36950828 + 5.01205 NA intron (NR_073512, intron 1 of 2) intron (NR_073512, intron 1 of 2) 2298 NR_073512 100506403 Hs.536609 NR_073512 ENSG00000159216 LOC100506403 - uncharacterized LOC100506403 ncRNA 13-PTNLD9-TUMOR_peak_8266 chr10 105510751 105510942 + 5.01205 NA intron (NR_038940, intron 2 of 2) intron (NR_038940, intron 2 of 2) 4309 NR_038940 100505839 Hs.655149 NR_038940 SH3PXD2A-AS1 - SH3PXD2A antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_46087 chr6 134609987 134610128 + 5.01205 NA intron (NM_001143676, intron 1 of 13) intron (NM_001143676, intron 1 of 13) 29139 NM_001143676 6446 Hs.510078 NM_005627 HPRD:04264 SGK1 SGK serum/glucocorticoid regulated kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_43807 chr6 12234444 12234538 + 5.01205 NA Intergenic Intergenic -56038 NM_001168319 1906 Hs.511899 NM_001955 HPRD:07030 EDN1 ARCND3|ET1|HDLCQ7|PPET1|QME endothelin 1 protein-coding 13-PTNLD9-TUMOR_peak_594 chr1 20042189 20042397 + 5.01205 NA intron (NM_181719, intron 13 of 15) intron (NM_181719, intron 13 of 15) 50513 NM_000871 3362 Hs.22180 NM_000871 HPRD:03066 HTR6 5-HT6|5-HT6R 5-hydroxytryptamine (serotonin) receptor 6, G protein-coupled protein-coding 13-PTNLD9-TUMOR_peak_5171 chr1 204721142 204721382 + 5.01205 NA Intergenic MER52C|LTR|ERV1 -66665 NM_201630 10446 Hs.26312 NM_006338 HPRD:16109 LRRN2 FIGLER7|GAC1|LRANK1|LRRN5 leucine rich repeat neuronal 2 protein-coding 13-PTNLD9-TUMOR_peak_32215 chr21 36095322 36095438 + 5.01205 NA TTS (NR_024351) TTS (NR_024351) 14099 NR_024351 54064 Hs.436868 NR_024351 ENSG00000230978 LINC00160 C21orf52|NCRNA00160 long intergenic non-protein coding RNA 160 ncRNA 13-PTNLD9-TUMOR_peak_33736 chr3 10439485 10439814 + 5.01205 NA intron (NM_001001331, intron 5 of 22) intron (NM_001001331, intron 5 of 22) -3403 NR_030614 100126334 NR_030614 MIR885 MIRN885|hsa-mir-885 microRNA 885 ncRNA 13-PTNLD9-TUMOR_peak_20105 chr16 89098452 89098651 + 5.01205 NA Intergenic L1MEf|LINE|L1 -55047 NM_005187 863 Hs.513811 NM_005187 HPRD:04847 CBFA2T3 ETO2|MTG16|MTGR2|ZMYND4 core-binding factor, runt domain, alpha subunit 2; translocated to, 3 protein-coding 13-PTNLD9-TUMOR_peak_10402 chr11 68024977 68025170 + 5.01205 NA Intergenic Intergenic 14396 NM_001300913 53838 Hs.303025 NM_022338 HPRD:10704 C11orf24 DM4E3 chromosome 11 open reading frame 24 protein-coding 13-PTNLD9-TUMOR_peak_21389 chr17 47393035 47393129 + 5.01205 NA intron (NM_014897, intron 2 of 5) intron (NM_014897, intron 2 of 5) -27266 NR_106745 102465137 NR_106745 MIR6129 hsa-mir-6129 microRNA 6129 ncRNA 13-PTNLD9-TUMOR_peak_54455 chr9 114754900 114755030 + 5.01205 NA Intergenic Intergenic 60585 NR_039814 100616114 NR_039814 MIR4668 - microRNA 4668 ncRNA 13-PTNLD9-TUMOR_peak_51321 chr8 95614522 95614680 + 5.01205 NA Intergenic Intergenic 37094 NR_034034 100288748 Hs.608210 NR_034034 ENSG00000261437 LOC100288748 - uncharacterized LOC100288748 ncRNA 13-PTNLD9-TUMOR_peak_3022 chr1 117619999 117620180 + 5.01205 NA intron (NM_003594, intron 7 of 22) intron (NM_003594, intron 7 of 22) 17140 NM_003594 8458 Hs.486818 NM_003594 TTF2 HuF2|ZGRF6 transcription termination factor, RNA polymerase II protein-coding 13-PTNLD9-TUMOR_peak_6350 chr10 4989923 4990119 + 5.01205 NA Intergenic MER67A|LTR|ERV1 -15433 NM_001353 1645 Hs.460260 NM_001353 AKR1C1 2-ALPHA-HSD|20-ALPHA-HSD|C9|DD1|DD1/DD2|DDH|DDH1|H-37|HAKRC|HBAB|MBAB aldo-keto reductase family 1, member C1 protein-coding 13-PTNLD9-TUMOR_peak_21635 chr17 57152004 57152170 + 5.01205 NA intron (NM_001005207, intron 8 of 24) HAL1|LINE|L1 32179 NM_015294 4591 Hs.579079 NM_015294 HPRD:05463 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 13-PTNLD9-TUMOR_peak_9403 chr11 30129551 30129668 + 5.01205 NA Intergenic Intergenic -91032 NM_002233 3739 Hs.592002 NM_002233 HPRD:01444 KCNA4 HBK4|HK1|HPCN2|HUKII|KCNA4L|KCNA8|KV1.4|PCN2 potassium voltage-gated channel, shaker-related subfamily, member 4 protein-coding 13-PTNLD9-TUMOR_peak_16046 chr14 65467710 65467855 + 5.01205 NA intron (NM_002028, intron 1 of 11) LTR23|LTR|ERV1 14275 NM_002028 2342 Hs.325531 NM_002028 HPRD:00608 FNTB FPTB farnesyltransferase, CAAX box, beta protein-coding 13-PTNLD9-TUMOR_peak_7849 chr10 80862017 80862134 + 5.01205 NA intron (NM_020338, intron 1 of 24) intron (NM_020338, intron 1 of 24) 33283 NM_020338 57178 Hs.193118 NM_020338 HPRD:12115 ZMIZ1 MIZ|RAI17|TRAFIP10|ZIMP10|hZIMP10 zinc finger, MIZ-type containing 1 protein-coding 13-PTNLD9-TUMOR_peak_12693 chr12 48868553 48868647 + 5.01205 NA Intergenic L1PA4|LINE|L1 2152 NM_012404 23519 Hs.532658 NM_012404 HPRD:06046 ANP32D PP32R2 acidic (leucine-rich) nuclear phosphoprotein 32 family, member D protein-coding 13-PTNLD9-TUMOR_peak_34163 chr3 30544314 30544417 + 5.01205 NA Intergenic Intergenic -103629 NM_001024847 7048 Hs.82028 NM_003242 HPRD:01823 TGFBR2 AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TGFR-2|TGFbeta-RII transforming growth factor, beta receptor II (70/80kDa) protein-coding 13-PTNLD9-TUMOR_peak_56589 chrX 148958573 148958749 + 5.01205 NA promoter-TSS (NR_109813) promoter-TSS (NR_109813) 28 NR_109813 101241891 Hs.744829 NR_109813 LINC00850 KUCG1 long intergenic non-protein coding RNA 850 ncRNA 13-PTNLD9-TUMOR_peak_20631 chr17 19230855 19230951 + 5.01205 NA intron (NM_014964, intron 7 of 10) AluJb|SINE|Alu 16984 NR_031591 100302256 NR_031591 MIR1180 MIRN1180|hsa-mir-1180 microRNA 1180 ncRNA 13-PTNLD9-TUMOR_peak_1611 chr1 46617786 46617932 + 5.01205 NA Intergenic MamGyp-int|LTR|Gypsy -19151 NM_001114172 8503 Hs.655387 NM_003629 HPRD:05831 PIK3R3 p55|p55-GAMMA phosphoinositide-3-kinase, regulatory subunit 3 (gamma) protein-coding 13-PTNLD9-TUMOR_peak_32003 chr21 20571251 20571345 + 5.01205 NA Intergenic Intergenic -439168 NR_109925 101927797 Hs.551743 NR_109925 LOC101927797 - uncharacterized LOC101927797 ncRNA 13-PTNLD9-TUMOR_peak_55725 chrX 38671231 38671342 + 5.01205 NA Intergenic MER129|LTR?|LTR? -8150 NR_046706 100874211 Hs.662789 NR_046706 MID1IP1-AS1 - MID1IP1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_46600 chr6 170735801 170735957 + 5.01205 NA Intergenic MER65A|LTR|ERV1 96030 NR_039787 100616430 NR_039787 MIR4644 - microRNA 4644 ncRNA 13-PTNLD9-TUMOR_peak_42033 chr5 131775206 131775478 + 5.01205 NA intron (NR_045116, intron 2 of 3) intron (NR_045116, intron 2 of 3) 28877 NR_045116 441108 Hs.658288 NM_001013717 HPRD:18460 C5orf56 - chromosome 5 open reading frame 56 ncRNA 13-PTNLD9-TUMOR_peak_21247 chr17 44150463 44150636 + 5.01205 NA intron (NM_015443, intron 4 of 14) intron (NM_015443, intron 4 of 14) 73933 NM_001007532 246744 Hs.661831 NM_001007532 HPRD:06142 STH MAPTIT saitohin protein-coding 13-PTNLD9-TUMOR_peak_45433 chr6 64516290 64516384 + 5.01205 NA intron (NM_001292009, intron 36 of 43) intron (NM_001292009, intron 36 of 43) 159906 NM_015153 23469 Hs.348921 NM_015153 HPRD:08477 PHF3 - PHD finger protein 3 protein-coding 13-PTNLD9-TUMOR_peak_7786 chr10 77010799 77010989 + 5.01205 NA Intergenic Intergenic -15124 NM_144589 118881 Hs.355333 NM_144589 HPRD:08678 COMTD1 - catechol-O-methyltransferase domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_16376 chr14 81790501 81790663 + 5.01205 NA intron (NM_001256430, intron 5 of 7) intron (NM_001256430, intron 5 of 7) 102974 NM_033104 85439 Hs.14248 NM_033104 HPRD:10531 STON2 STN2|STNB|STNB2 stonin 2 protein-coding 13-PTNLD9-TUMOR_peak_45524 chr6 75808613 75808707 + 5.01205 NA intron (NM_080645, intron 43 of 50) intron (NM_080645, intron 43 of 50) 106963 NM_080645 1303 Hs.101302 NM_004370 HPRD:00377 COL12A1 BA209D8.1|COL12A1L|DJ234P15.1 collagen, type XII, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_38799 chr4 86718098 86718285 + 5.01205 NA intron (NM_001042669, intron 1 of 7) LTR41|LTR|ERVL 18340 NM_001042669 83478 Hs.444229 NM_031305 HPRD:09804 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 13-PTNLD9-TUMOR_peak_31028 chr20 38252671 38252846 + 5.01205 NA Intergenic Intergenic -380345 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 - long intergenic non-protein coding RNA 1370 ncRNA 13-PTNLD9-TUMOR_peak_55017 chr9 138304447 138304617 + 5.01205 NA Intergenic CpG 59563 NR_038969 100506599 Hs.561897 NR_038969 ENSG00000225361 PPP1R26-AS1 - PPP1R26 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_13204 chr12 66501301 66501407 + 5.01205 NA Intergenic MER91B|DNA|hAT-Tip100 -23177 NR_125724 103625681 Hs.504820 NR_125724 LLPH-AS1 - LLPH antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_50911 chr8 50146568 50146667 + 5.01205 NA Intergenic Intergenic 161717 NM_001256597 492307 Hs.49890 NM_001007176 HPRD:16670 C8orf22 - chromosome 8 open reading frame 22 protein-coding 13-PTNLD9-TUMOR_peak_32651 chr22 17546446 17546624 + 5.01205 NA Intergenic Intergenic -19314 NM_001289905 23765 Hs.48353 NM_014339 HPRD:10399 IL17RA CANDF5|CD217|CDw217|IL-17RA|IL17R|hIL-17R interleukin 17 receptor A protein-coding 13-PTNLD9-TUMOR_peak_34383 chr3 44576247 44576434 + 5.01205 NA Intergenic LTR14C|LTR|ERVK -20327 NM_025169 55888 Hs.529512 NM_018651 HPRD:15744 ZKSCAN7 ZFP|ZNF167|ZNF448|ZNF64|ZSCAN39 zinc finger with KRAB and SCAN domains 7 protein-coding 13-PTNLD9-TUMOR_peak_16193 chr14 71067340 71067435 + 5.01205 NA promoter-TSS (NM_001284210) promoter-TSS (NM_001284210) 20 NM_001284211 10001 Hs.497353 NM_005466 HPRD:04284 MED6 ARC33|NY-REN-28 mediator complex subunit 6 protein-coding 13-PTNLD9-TUMOR_peak_33153 chr22 32999061 32999190 + 5.01205 NA intron (NM_001135774, intron 6 of 13) intron (NM_001135774, intron 6 of 13) 127901 NM_001033024 25793 Hs.5912 NM_012179 HPRD:07292 FBXO7 FBX|FBX07|FBX7|PARK15|PKPS F-box protein 7 protein-coding 13-PTNLD9-TUMOR_peak_34236 chr3 35986925 35987130 + 5.01205 NA Intergenic Intergenic 201059 NR_029824 406916 NR_029824 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128b microRNA 128-2 ncRNA 13-PTNLD9-TUMOR_peak_13469 chr12 91800882 91800976 + 5.01205 NA Intergenic Intergenic -224123 NM_001920 1634 Hs.156316 NM_001920 HPRD:00501 DCN CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B decorin protein-coding 13-PTNLD9-TUMOR_peak_27891 chr2 103222908 103223009 + 5.01205 NA Intergenic Intergenic -13208 NM_003048 6549 Hs.250083 NM_003048 HPRD:02756 SLC9A2 NHE2 solute carrier family 9, subfamily A (NHE2, cation proton antiporter 2), member 2 protein-coding 13-PTNLD9-TUMOR_peak_9555 chr11 36326029 36326123 + 5.01205 NA intron (NM_001160167, intron 1 of 8) L1MC4a|LINE|L1 8351 NM_001160167 79899 Hs.19987 NM_024841 HPRD:07854 PRR5L PROTOR2 proline rich 5 like protein-coding 13-PTNLD9-TUMOR_peak_628 chr1 21913500 21913597 + 5.01205 NA Intergenic Intergenic 64800 NM_001145658 5909 Hs.148178 NM_002885 HPRD:02609 RAP1GAP RAP1GA1|RAP1GAP1|RAP1GAPII|RAPGAP RAP1 GTPase activating protein protein-coding 13-PTNLD9-TUMOR_peak_32037 chr21 27370629 27370746 + 5.01205 NA intron (NM_001136130, intron 6 of 16) intron (NM_001136130, intron 6 of 16) 142021 NM_001136016 351 Hs.434980 NM_000484 HPRD:00100 APP AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2 amyloid beta (A4) precursor protein protein-coding 13-PTNLD9-TUMOR_peak_42765 chr5 155754038 155754146 + 5.01205 NA 5' UTR (NM_000337, exon 1 of 9) 5' UTR (NM_000337, exon 1 of 9) 325 NM_000337 6444 Hs.387207 NM_000337 HPRD:03246 SGCD 35DAG|CMD1L|DAGD|SG-delta|SGCDP|SGD sarcoglycan, delta (35kDa dystrophin-associated glycoprotein) protein-coding 13-PTNLD9-TUMOR_peak_51392 chr8 101270921 101271066 + 5.01205 NA exon (NM_001280539, exon 11 of 11) exon (NM_001280539, exon 11 of 11) 44494 NM_015435 25897 Hs.292882 NM_015435 HPRD:06176 RNF19A RNF19 ring finger protein 19A, RBR E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_38627 chr4 77461260 77461402 + 5.01205 NA intron (NM_020859, intron 1 of 10) intron (NM_020859, intron 1 of 10) -33390 NR_039654 100616299 NR_039654 MIR4450 - microRNA 4450 ncRNA 13-PTNLD9-TUMOR_peak_46940 chr7 17315845 17315941 + 5.01205 NA Intergenic Intergenic -22383 NM_001621 196 Hs.171189 NM_001621 HPRD:02596 AHR bHLHe76 aryl hydrocarbon receptor protein-coding 13-PTNLD9-TUMOR_peak_28552 chr2 135130516 135130700 + 5.01205 NA intron (NM_002410, intron 10 of 15) intron (NM_002410, intron 10 of 15) 118778 NM_002410 4249 Hs.4988 NM_002410 HPRD:03467 MGAT5 GNT-V|GNT-VA mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase protein-coding 13-PTNLD9-TUMOR_peak_45605 chr6 82957941 82958052 + 5.01205 NA promoter-TSS (NM_001300906) promoter-TSS (NM_001300906) -525 NM_001300906 25998 Hs.306425 NM_015525 HPRD:12105 IBTK BTBD26|BTKI inhibitor of Bruton agammaglobulinemia tyrosine kinase protein-coding 13-PTNLD9-TUMOR_peak_13973 chr12 117958517 117958629 + 5.01205 NA intron (NM_173598, intron 14 of 19) L2|LINE|L2 -158966 NM_001204218 4842 Hs.654410 NM_000620 HPRD:01226 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 (neuronal) protein-coding 13-PTNLD9-TUMOR_peak_54989 chr9 136721126 136721332 + 5.01205 NA intron (NM_003371, intron 3 of 26) L1MB5|LINE|L1 -116152 NM_007101 1757 Hs.198003 NM_007101 HPRD:06831 SARDH BPR-2|DMGDHL1|SAR|SARD|SDH sarcosine dehydrogenase protein-coding 13-PTNLD9-TUMOR_peak_18974 chr16 30115934 30116118 + 5.01205 NA TTS (NM_024307) TTS (NM_024307) -8489 NM_001145524 83719 Hs.513491 NM_031477 HPRD:15683 YPEL3 - yippee-like 3 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_18423 chr16 8041046 8041194 + 5.01205 NA Intergenic L1MA4|LINE|L1 546708 NM_001290098 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 13-PTNLD9-TUMOR_peak_53130 chr9 35798826 35798987 + 5.01205 NA intron (NM_003995, intron 2 of 21) intron (NM_003995, intron 2 of 21) 6500 NM_003995 4882 Hs.78518 NM_000907 HPRD:00166 NPR2 AMDM|ANPRB|ANPb|ECDM|GUC2B|GUCY2B|NPRB|NPRBi natriuretic peptide receptor 2 protein-coding 13-PTNLD9-TUMOR_peak_12436 chr12 31263456 31263571 + 5.01205 NA Intergenic MLT1C|LTR|ERVL-MaLR -36732 NR_038927 100506660 Hs.586774 NR_038927 ENSG00000245614 DDX11-AS1 - DDX11 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_14738 chr13 49066789 49066883 + 5.01205 NA intron (NM_001286831, intron 11 of 11) L2a|LINE|L2 40556 NM_001268 1102 Hs.652712 NM_001268 HPRD:04631 RCBTB2 CHC1L|RLG regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2 protein-coding 13-PTNLD9-TUMOR_peak_21882 chr17 67758227 67758408 + 5.01205 NA intron (NR_109971, intron 3 of 5) intron (NR_109971, intron 3 of 5) 168189 NR_109972 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 13-PTNLD9-TUMOR_peak_15614 chr14 41125681 41125775 + 5.01205 NA Intergenic ERVL-E-int|LTR|ERVL -298188 NR_109758 644919 Hs.434414 NR_109757 LOC644919 - uncharacterized LOC644919 ncRNA 13-PTNLD9-TUMOR_peak_43792 chr6 11702871 11702965 + 5.01205 NA Intergenic Intergenic 76362 NM_001143948 84830 Hs.126409 NM_032744 HPRD:12836 ADTRP AIG1L|C6orf105|dJ413H6.1 androgen-dependent TFPI-regulating protein protein-coding 13-PTNLD9-TUMOR_peak_1986 chr1 61039500 61039673 + 5.01205 NA Intergenic Intergenic 251670 NR_110628 101926964 Hs.650459 NR_110628 ENSG00000231252 LOC101926964 - uncharacterized LOC101926964 ncRNA 13-PTNLD9-TUMOR_peak_796 chr1 27286891 27287013 + 5.01205 NA promoter-TSS (NM_152365) promoter-TSS (NM_152365) -51 NM_152365 126695 Hs.188881 NM_152365 HPRD:08754 KDF1 C1orf172 keratinocyte differentiation factor 1 protein-coding 13-PTNLD9-TUMOR_peak_7969 chr10 90259963 90260079 + 5.01205 NA intron (NM_001031709, intron 4 of 6) intron (NM_001031709, intron 4 of 6) 83061 NM_018363 55328 Hs.149849 NM_018363 HPRD:07742 RNLS C10orf59|RENALASE renalase, FAD-dependent amine oxidase protein-coding 13-PTNLD9-TUMOR_peak_12317 chr12 25062615 25062873 + 5.01205 NA intron (NM_005504, intron 1 of 10) MLT1F|LTR|ERVL-MaLR -6735 NM_001178093 586 Hs.438993 NM_005504 HPRD:00216 BCAT1 BCATC|BCT1|ECA39|MECA39|PNAS121|PP18 branched chain amino-acid transaminase 1, cytosolic protein-coding 13-PTNLD9-TUMOR_peak_42204 chr5 136958055 136958151 + 5.01205 NA intron (NM_001257194, intron 14 of 14) intron (NM_001257194, intron 14 of 14) 25235 NR_030588 100126343 NR_030588 MIR874 MIRN874|hsa-mir-874 microRNA 874 ncRNA 13-PTNLD9-TUMOR_peak_38159 chr4 30759102 30759202 + 5.01205 NA intron (NM_032457, intron 1 of 2) L2b|LINE|L2 37115 NM_032457 5099 Hs.479439 NM_002589 HPRD:04288 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 13-PTNLD9-TUMOR_peak_56792 chrY 2636201 2636363 + 5.01205 NA intron (NR_003254, intron 1 of 2).2 intron (NR_003254, intron 1 of 2).2 15945 NR_003254 100132596 Hs.179675 NR_003254 XGY2 XG|XGPY|XGPY2 Xg pseudogene, Y-linked 2 pseudo 13-PTNLD9-TUMOR_peak_27219 chr2 70615373 70615543 + 5.01205 NA Intergenic Intergenic -86238 NM_032822 84908 Hs.516077 NM_032822 HPRD:07866 FAM136A - family with sequence similarity 136, member A protein-coding 13-PTNLD9-TUMOR_peak_16506 chr14 95949653 95949757 + 5.01205 NA Intergenic Intergenic -7532 NM_152592 161176 Hs.354645 NM_152592 HPRD:12652 SYNE3 C14orf49|NET53|Nesp3 spectrin repeat containing, nuclear envelope family member 3 protein-coding 13-PTNLD9-TUMOR_peak_46424 chr6 158981015 158981143 + 5.01205 NA intron (NM_020823, intron 1 of 16) CpG 23611 NM_020823 57583 Hs.99145 NM_020823 ENSG00000146433 TMEM181 GPR178|KIAA1423 transmembrane protein 181 protein-coding 13-PTNLD9-TUMOR_peak_15483 chr14 32887231 32887454 + 5.01205 NA intron (NM_004274, intron 1 of 13) intron (NM_004274, intron 1 of 13) 88863 NM_004274 9472 Hs.509083 NM_004274 HPRD:05257 AKAP6 ADAP100|ADAP6|AKAP100|PRKA6|mAKAP A kinase (PRKA) anchor protein 6 protein-coding 13-PTNLD9-TUMOR_peak_8500 chr10 123880657 123880870 + 5.01205 NA intron (NM_001291879, intron 1 of 16) intron (NM_001291879, intron 1 of 16) 8209 NM_001291879 10579 Hs.501252 NM_006997 HPRD:05600 TACC2 AZU-1|ECTACC transforming, acidic coiled-coil containing protein 2 protein-coding 13-PTNLD9-TUMOR_peak_17855 chr15 84639206 84639515 + 5.01205 NA exon (NM_207517, exon 20 of 30) exon (NM_207517, exon 20 of 30) -109579 NR_036652 648809 Hs.585157 NR_036652 EFTUD1P1 FAM42B|HsT19321 elongation factor Tu GTP binding domain containing 1 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_49433 chr7 142153079 142153173 + 5.01205 NA Intergenic Intergenic -181058 NR_036483 207147 Hs.604069 NR_036483 TRY2P - trypsinogen-like pseudogene pseudo 13-PTNLD9-TUMOR_peak_44089 chr6 21987782 21987894 + 5.01205 NA intron (NR_015410, intron 6 of 11) intron (NR_015410, intron 6 of 11) 159584 NR_034143 729177 Hs.730673 NR_034143 ENSG00000260455 CASC14 - cancer susceptibility candidate 14 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_31309 chr20 46704686 46704837 + 5.01205 NA Intergenic Intergenic -85900 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 13-PTNLD9-TUMOR_peak_38589 chr4 75240391 75240542 + 5.01205 NA intron (NM_001432, intron 1 of 4) AmnSINE1|SINE|Deu 9606 NM_001432 2069 Hs.115263 NM_001432 HPRD:03638 EREG ER epiregulin protein-coding 13-PTNLD9-TUMOR_peak_44168 chr6 25138575 25138669 + 5.01205 NA promoter-TSS (NR_027626) promoter-TSS (NR_027626) -2 NR_027626 8418 Hs.484918 NR_002174 CMAHP CMAH|CSAH cytidine monophospho-N-acetylneuraminic acid hydroxylase, pseudogene pseudo 13-PTNLD9-TUMOR_peak_40088 chr4 190714240 190714334 + 5.01205 NA Intergenic Intergenic 133527 NR_121679 101928971 Hs.519164 NR_121679 ENSG00000250739 LINC01262 TCONS_l2_00021807 long intergenic non-protein coding RNA 1262 ncRNA 13-PTNLD9-TUMOR_peak_31195 chr20 44139157 44139310 + 5.01205 NA Intergenic Intergenic 5031 NM_006652 10816 Hs.370724 NM_006652 ENSG00000101446 SPINT3 HKIB9 serine peptidase inhibitor, Kunitz type, 3 protein-coding 13-PTNLD9-TUMOR_peak_38041 chr4 16252373 16252468 + 5.01205 NA intron (NR_027697, intron 2 of 2) intron (NR_027697, intron 2 of 2) 24134 NR_027697 202020 Hs.445315 NM_152684 HPRD:08263 TAPT1-AS1 - TAPT1 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_39293 chr4 125963286 125963460 + 5.01205 NA Intergenic Intergenic -274194 NM_001291303 79633 Hs.563205 NM_024582 HPRD:07637 FAT4 CDHF14|CDHR11|FAT-J|FATJ|NBLA00548|VMLDS2 FAT atypical cadherin 4 protein-coding 13-PTNLD9-TUMOR_peak_4407 chr1 172400881 172400975 + 5.01205 NA intron (NM_139240, intron 1 of 6) L1PA6|LINE|L1 11100 NM_139240 92346 Hs.517991 NM_139240 HPRD:14291 C1orf105 - chromosome 1 open reading frame 105 protein-coding 13-PTNLD9-TUMOR_peak_17270 chr15 50835172 50835336 + 5.01205 NA intron (NM_203494, intron 3 of 6) intron (NM_203494, intron 3 of 6) 3648 NM_203494 373509 Hs.677758 NM_203494 HPRD:15639 USP50 - ubiquitin specific peptidase 50 protein-coding 13-PTNLD9-TUMOR_peak_34852 chr3 65016598 65016745 + 5.01205 NA Intergenic L2b|LINE|L2 310988 NR_030317 693126 NR_030317 miRBase:MI0003598 MIR548A2 MIRN548A2 microRNA 548a-2 ncRNA 13-PTNLD9-TUMOR_peak_8579 chr10 127671826 127671920 + 5.01205 NA intron (NM_145235, intron 2 of 10) intron (NM_145235, intron 2 of 10) -10031 NR_102707 101410540 Hs.557889 NR_102707 ENSG00000233409 FANK1-AS1 - FANK1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_46748 chr7 3924352 3924446 + 5.01205 NA intron (NM_152744, intron 5 of 44) intron (NM_152744, intron 5 of 44) -244918 NM_001079653 221935 Hs.653013 NM_152744 HPRD:07388 SDK1 - sidekick cell adhesion molecule 1 protein-coding 13-PTNLD9-TUMOR_peak_17277 chr15 51169336 51169471 + 5.01205 NA Intergenic Intergenic -31466 NM_007347 23431 Hs.413366 NM_007347 HPRD:06258 AP4E1 CPSQ4|SPG51 adaptor-related protein complex 4, epsilon 1 subunit protein-coding 13-PTNLD9-TUMOR_peak_24665 chr19 32742259 32742365 + 5.01205 NA Intergenic Intergenic -94202 NM_014910 22847 Hs.205392 NM_014910 HPRD:11722 ZNF507 - zinc finger protein 507 protein-coding 13-PTNLD9-TUMOR_peak_32304 chr21 39531691 39531786 + 5.01205 NA Intergenic Intergenic 38193 NR_026839 84677 Hs.733345 NM_032589 HPRD:10924 DSCR8 C21orf65|CT25.1a|CT25.1b|MMA-1|MMA-1a|MMA-1b|MMA1|MTAG2 Down syndrome critical region gene 8 ncRNA 13-PTNLD9-TUMOR_peak_23350 chr18 59038528 59038622 + 5.01205 NA Intergenic Intergenic -119200 NM_031891 28316 Hs.671510 NM_031891 HPRD:10429 CDH20 CDH7L3|Cdh7 cadherin 20, type 2 protein-coding 13-PTNLD9-TUMOR_peak_15062 chr13 106571509 106571694 + 5.01205 NA Intergenic Intergenic 212422 NR_046391 144920 Hs.567700 NR_046391 LINC00343 LINC00344|NCRNA00343|NCRNA00344 long intergenic non-protein coding RNA 343 ncRNA 13-PTNLD9-TUMOR_peak_40542 chr5 32391288 32391400 + 5.01205 NA intron (NM_016107, intron 11 of 19) Tigger7|DNA|TcMar-Tigger 53500 NM_016107 51663 Hs.435231 NM_016107 HPRD:15730 ZFR SPG71|ZFR1 zinc finger RNA binding protein protein-coding 13-PTNLD9-TUMOR_peak_52192 chr8 134805584 134805754 + 5.01205 NA Intergenic Intergenic -16074 NR_125422 101927798 Hs.615036 NR_125422 ENSG00000253165 LOC101927798 - uncharacterized LOC101927798 ncRNA 13-PTNLD9-TUMOR_peak_46389 chr6 157542573 157542689 + 5.01205 NA Intergenic Intergenic 202660 NM_018452 729515 Hs.157212 NM_018452 ENSG00000215712 TMEM242 BM033|C6orf35 transmembrane protein 242 protein-coding 13-PTNLD9-TUMOR_peak_50313 chr8 22716844 22716985 + 5.01205 NA intron (NM_144962, intron 3 of 6) intron (NM_144962, intron 3 of 6) -18571 NR_125433 101929237 Hs.677838 NR_125433 ENSG00000248738 LOC101929237 - uncharacterized LOC101929237 ncRNA 13-PTNLD9-TUMOR_peak_21526 chr17 53025769 53025982 + 5.01205 NA intron (NM_005486, intron 12 of 15) L2a|LINE|L2 20189 NM_001162861 1353 Hs.591171 NM_004375 HPRD:04709 COX11 COX11P cytochrome c oxidase assembly homolog 11 (yeast) protein-coding 13-PTNLD9-TUMOR_peak_41418 chr5 80490929 80491146 + 5.01205 NA intron (NM_006909, intron 18 of 26) intron (NM_006909, intron 18 of 26) -10425 NR_002754 26829 NR_002754 ENSG00000199347 RNU5E-1 RNU5E|U5E RNA, U5E small nuclear 1 snRNA 13-PTNLD9-TUMOR_peak_11814 chr12 2307538 2307632 + 5.01205 NA intron (NM_001129832, intron 3 of 47) intron (NM_001129832, intron 3 of 47) 25062 NR_046578 100874234 Hs.372570 NR_046578 ENSG00000256025 CACNA1C-AS4 - CACNA1C antisense RNA 4 ncRNA 13-PTNLD9-TUMOR_peak_18059 chr15 99322958 99323099 + 5.01205 NA intron (NM_001291858, intron 2 of 20) intron (NM_001291858, intron 2 of 20) -4627 NR_039864 100616432 NR_039864 MIR4714 - microRNA 4714 ncRNA 13-PTNLD9-TUMOR_peak_55644 chrX 23391705 23391845 + 5.01205 NA intron (NM_173495, intron 1 of 2) intron (NM_173495, intron 1 of 2) 38790 NM_173495 139411 Hs.319503 NM_173495 PTCHD1 - patched domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_41709 chr5 109713934 109714028 + 5.01205 NA Intergenic 7SK|RNA|RNA 348469 NM_001039763 642987 Hs.729154 NM_001039763 TMEM232 - transmembrane protein 232 protein-coding 13-PTNLD9-TUMOR_peak_16899 chr15 30226618 30226712 + 5.01205 NA intron (NM_001301025, intron 2 of 28) intron (NM_001301025, intron 2 of 28) 34337 NM_001301025 7082 Hs.743990 NM_003257 HPRD:03002 TJP1 ZO-1 tight junction protein 1 protein-coding 13-PTNLD9-TUMOR_peak_39850 chr4 170204285 170204379 + 5.01205 NA Intergenic Intergenic -12083 NM_020870 57630 Hs.301804 NM_020870 HPRD:15335 SH3RF1 POSH|RNF142|SH3MD2 SH3 domain containing ring finger 1 protein-coding 13-PTNLD9-TUMOR_peak_44849 chr6 37041992 37042157 + 5.01205 NA Intergenic Intergenic 68651 NM_173558 221472 Hs.509664 NM_173558 HPRD:05478 FGD2 ZFYVE4 FYVE, RhoGEF and PH domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_20893 chr17 34519878 34519981 + 5.01205 NA Intergenic MLT1J-int|LTR|ERVL-MaLR 4218 NM_001001437 414062 Hs.454713 NM_001001437 HPRD:14426 CCL3L3 464.2|D17S1718|G0S19-2|LD78|LD78BETA|SCYA3L|SCYA3L1 chemokine (C-C motif) ligand 3-like 3 protein-coding 13-PTNLD9-TUMOR_peak_16515 chr14 96706257 96706522 + 5.01205 NA intron (NM_000623, intron 2 of 2) intron (NM_000623, intron 2 of 2) -16158 NM_000710 623 Hs.525572 NM_000710 HPRD:02639 BDKRB1 B1BKR|B1R|BDKRB2|BKB1R|BKR1|BRADYB1 bradykinin receptor B1 protein-coding 13-PTNLD9-TUMOR_peak_33045 chr22 28536101 28536285 + 5.01205 NA intron (NM_001145418, intron 6 of 22) intron (NM_001145418, intron 6 of 22) -219593 NR_036169 100423034 NR_036169 miRBase:MI0014247 MIR3199-1 - microRNA 3199-1 ncRNA 13-PTNLD9-TUMOR_peak_55486 chrX 2686201 2686363 + 5.01205 NA intron (NR_003254, intron 1 of 2) intron (NR_003254, intron 1 of 2) 15945 NR_003254 100132596 Hs.179675 NR_003254 XGY2 XG|XGPY|XGPY2 Xg pseudogene, Y-linked 2 pseudo 13-PTNLD9-TUMOR_peak_23423 chr18 68001086 68001203 + 5.01205 NA Intergenic Intergenic 45007 NM_004232 9306 Hs.44439 NM_004232 HPRD:05491 SOCS6 CIS-4|CIS4|HSPC060|SOCS-4|SOCS-6|SOCS4|SSI4|STAI4|STATI4 suppressor of cytokine signaling 6 protein-coding 13-PTNLD9-TUMOR_peak_15734 chr14 51202135 51202233 + 5.01205 NA intron (NM_182946, intron 28 of 29) intron (NM_182946, intron 28 of 29) -67113 NM_021818 60485 Hs.642842 NM_021818 HPRD:06229 SAV1 SAV|WW45|WWP4 salvador family WW domain containing protein 1 protein-coding 13-PTNLD9-TUMOR_peak_48155 chr7 80811482 80811638 + 5.01205 NA Intergenic LTR17|LTR|ERV1 -262893 NM_006379 10512 Hs.269109 NM_006379 HPRD:04034 SEMA3C SEMAE|SemE sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C protein-coding 13-PTNLD9-TUMOR_peak_56216 chrX 84003393 84003487 + 5.01205 NA Intergenic MER68-int|LTR|ERVL -185717 NR_024062 100131816 Hs.460809 NM_178567 ENSG00000229547 UBE2DNL - ubiquitin-conjugating enzyme E2D N-terminal like (pseudogene) pseudo 13-PTNLD9-TUMOR_peak_29760 chr2 214103770 214103898 + 5.01205 NA Intergenic Intergenic 45095 NM_001242575 100130451 NM_001242575 LOC100130451 - uncharacterized LOC100130451 protein-coding 13-PTNLD9-TUMOR_peak_9346 chr11 26606493 26606626 + 5.01205 NA intron (NM_031418, intron 14 of 26) L2|LINE|L2 -12744 NM_001135091 143662 Hs.407152 NM_145650 HPRD:16349 MUC15 MUC-15|PAS3|PASIII mucin 15, cell surface associated protein-coding 13-PTNLD9-TUMOR_peak_26224 chr2 18158565 18158694 + 5.01205 NA Intergenic Intergenic 98705 NM_002252 3790 Hs.414489 NM_002252 HPRD:04865 KCNS3 KV9.3 potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3 protein-coding 13-PTNLD9-TUMOR_peak_48730 chr7 105431567 105431684 + 5.01205 NA intron (NM_152749, intron 2 of 3) intron (NM_152749, intron 2 of 3) 85406 NM_020725 222255 Hs.745056 NM_020725 HPRD:12508 ATXN7L1 ATXN7L4 ataxin 7-like 1 protein-coding 13-PTNLD9-TUMOR_peak_28052 chr2 111985448 111985571 + 5.01205 NA Intergenic Intergenic 93154 NR_039636 100616341 NR_039636 miRBase:MI0016777 MIR4435-2 - microRNA 4435-2 ncRNA 13-PTNLD9-TUMOR_peak_28812 chr2 157333537 157333633 + 5.01205 NA intron (NM_001083112, intron 2 of 16) intron (NM_001083112, intron 2 of 16) 40685 NM_000408 2820 Hs.512382 NM_000408 HPRD:00715 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 (mitochondrial) protein-coding 13-PTNLD9-TUMOR_peak_37838 chr4 7768288 7768479 + 5.01205 NA intron (NM_198595, intron 16 of 16) intron (NM_198595, intron 16 of 16) 12566 NR_026892 84740 Hs.663029 NM_032654 ENSG00000272620 AFAP1-AS1 AFAP1-AS|AFAP1AS AFAP1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_52401 chr8 144063630 144063792 + 5.01205 NA non-coding (NR_026913, exon 2 of 2) non-coding (NR_026913, exon 2 of 2) -13534 NR_102426 100128627 NR_102426 CDC42P3 - cell division cycle 42 pseudogene 3 pseudo 13-PTNLD9-TUMOR_peak_35179 chr3 99551023 99551143 + 5.01205 NA TTS (NM_001282793) TTS (NM_001282793) -8374 NR_110821 101929357 Hs.741615 NR_110821 HP09053 - uncharacterized LOC101929357 ncRNA 13-PTNLD9-TUMOR_peak_56547 chrX 135614218 135614314 + 5.01205 NA promoter-TSS (NM_016267) promoter-TSS (NM_016267) -45 NM_016267 51442 Hs.496843 NM_016267 HPRD:06751 VGLL1 TDU|VGL1 vestigial-like family member 1 protein-coding 13-PTNLD9-TUMOR_peak_27755 chr2 97573241 97573508 + 5.01205 NA intron (NM_001122646, intron 12 of 16) intron (NM_001122646, intron 12 of 16) -9504 NM_016490 51252 Hs.107922 NM_016490 HPRD:14235 FAM178B - family with sequence similarity 178, member B protein-coding 13-PTNLD9-TUMOR_peak_12650 chr12 46825692 46825854 + 5.01205 NA intron (NR_125381, intron 2 of 2) intron (NR_125381, intron 2 of 2) 47883 NR_125381 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 13-PTNLD9-TUMOR_peak_34094 chr3 24406707 24406892 + 5.01205 NA intron (NM_001128176, intron 1 of 10) intron (NM_001128176, intron 1 of 10) -128779 NR_046244 644990 Hs.631912 NR_046244 THRB-AS1 - THRB antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_45438 chr6 65422690 65422784 + 5.01205 NA intron (NM_001292009, intron 22 of 43) intron (NM_001292009, intron 22 of 43) -588574 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 13-PTNLD9-TUMOR_peak_8881 chr11 4095667 4095761 + 5.01205 NA intron (NM_001277962, intron 6 of 12) intron (NM_001277962, intron 6 of 12) -20210 NM_001033 6240 Hs.445705 NM_001033 HPRD:01588 RRM1 R1|RIR1|RR1 ribonucleotide reductase M1 protein-coding 13-PTNLD9-TUMOR_peak_34795 chr3 59467865 59467985 + 5.01205 NA Intergenic L1MD3|LINE|L1 -432210 NM_198463 200844 Hs.368434 NM_198463 HPRD:13458 C3orf67 - chromosome 3 open reading frame 67 protein-coding 13-PTNLD9-TUMOR_peak_16059 chr14 66259030 66259182 + 5.01205 NA Intergenic L2a|LINE|L2 379658 NR_038170 2530 Hs.597649 NM_004480 HPRD:03994 FUT8 - fucosyltransferase 8 (alpha (1,6) fucosyltransferase) protein-coding 13-PTNLD9-TUMOR_peak_35902 chr3 130491660 130491876 + 5.01205 NA Intergenic Intergenic -26072 NM_014602 30849 Hs.149032 NM_014602 HPRD:04010 PIK3R4 VPS15|p150 phosphoinositide-3-kinase, regulatory subunit 4 protein-coding 13-PTNLD9-TUMOR_peak_17743 chr15 79001806 79001905 + 5.01205 NA Intergenic Intergenic -42524 NR_036495 646938 Hs.449783 NR_036495 ENSG00000238166 LOC646938 - TBC1 domain family, member 2B pseudogene pseudo 13-PTNLD9-TUMOR_peak_52029 chr8 129527117 129527211 + 5.01205 NA intron (NR_121672, intron 2 of 7) intron (NR_121672, intron 2 of 7) 49761 NR_121672 101927774 Hs.628730 NR_121672 ENSG00000254275 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 13-PTNLD9-TUMOR_peak_42236 chr5 137978793 137978942 + 5.01205 NA Intergenic Intergenic -67549 NM_004134 3313 Hs.184233 NM_004134 HPRD:02770 HSPA9 CSA|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74 heat shock 70kDa protein 9 (mortalin) protein-coding 13-PTNLD9-TUMOR_peak_17484 chr15 67095648 67095819 + 5.01205 NA Intergenic Intergenic 94803 NM_001142861 4091 Hs.153863 NM_005585 HPRD:04240 SMAD6 AOVD2|HsT17432|MADH6|MADH7 SMAD family member 6 protein-coding 13-PTNLD9-TUMOR_peak_20798 chr17 28431670 28431993 + 5.01205 NA intron (NM_198529, intron 22 of 22) intron (NM_198529, intron 22 of 22) -11994 NM_001261467 84081 Hs.462663 NM_032141 HPRD:08536 NSRP1 CCDC55|HSPC095|NSrp70 nuclear speckle splicing regulatory protein 1 protein-coding 13-PTNLD9-TUMOR_peak_2976 chr1 116150982 116151179 + 5.01205 NA Intergenic LTR16E2|LTR|ERVL -33494 NM_001172411 81839 Hs.515130 NM_138959 HPRD:18279 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 13-PTNLD9-TUMOR_peak_26570 chr2 36639206 36639392 + 5.01205 NA intron (NM_016441, intron 2 of 16) intron (NM_016441, intron 2 of 16) 55929 NM_016441 51232 Hs.699247 NM_016441 HPRD:08392 CRIM1 CRIM-1|S52 cysteine rich transmembrane BMP regulator 1 (chordin-like) protein-coding 13-PTNLD9-TUMOR_peak_30400 chr20 10112640 10112885 + 5.01205 NA intron (NR_040710, intron 2 of 4) intron (NR_040710, intron 2 of 4) -86715 NM_003081 6616 Hs.167317 NM_003081 HPRD:02637 SNAP25 RIC-4|RIC4|SEC9|SNAP|SNAP-25|bA416N4.2|dJ1068F16.2 synaptosomal-associated protein, 25kDa protein-coding 13-PTNLD9-TUMOR_peak_14820 chr13 59252224 59252318 + 5.01205 NA Intergenic L1PA2|LINE|L1 512310 NR_120416 101926897 Hs.640215 NR_120416 LOC101926897 - uncharacterized LOC101926897 ncRNA 13-PTNLD9-TUMOR_peak_32243 chr21 37037116 37037218 + 5.01205 NA Intergenic MLT1H|LTR|ERVL-MaLR -55846 NR_030414 768219 NR_030414 miRBase:MI0003906 MIR802 MIRN802|hsa-mir-802 microRNA 802 ncRNA 13-PTNLD9-TUMOR_peak_43895 chr6 14721334 14721429 + 5.01205 NA Intergenic Intergenic -435696 NR_108096 102216342 Hs.563409 NR_108096 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 13-PTNLD9-TUMOR_peak_53933 chr9 92003240 92003495 + 5.01205 NA intron (NM_006378, intron 13 of 17) intron (NM_006378, intron 13 of 17) 69601 NM_001282690 79048 Hs.59804 NM_024077 HPRD:07408 SECISBP2 SBP2 SECIS binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_5342 chr1 210771687 210771816 + 5.01205 NA intron (NM_018194, intron 10 of 11) L1MA3|LINE|L1 269111 NM_001170580 55733 Hs.58650 NM_018194 HPRD:12041 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 13-PTNLD9-TUMOR_peak_37957 chr4 9678654 9678769 + 5.01205 NA Intergenic MER104|DNA|TcMar-Tc2 -104547 NM_000798 1816 Hs.380681 NM_000798 HPRD:00542 DRD5 DBDR|DRD1B|DRD1L2 dopamine receptor D5 protein-coding 13-PTNLD9-TUMOR_peak_11027 chr11 100449872 100449966 + 5.01205 NA Intergenic Intergenic -108488 NM_152432 143872 Hs.741465 NM_152432 ENSG00000165895 ARHGAP42 GRAF3 Rho GTPase activating protein 42 protein-coding 13-PTNLD9-TUMOR_peak_52598 chr9 677697 677798 + 5.01205 NA intron (NM_001256877, intron 3 of 12) intron (NM_001256877, intron 3 of 12) -29059 NM_153186 23189 Hs.306764 NM_015158 HPRD:09651 KANK1 ANKRD15|CPSQ2|KANK KN motif and ankyrin repeat domains 1 protein-coding 13-PTNLD9-TUMOR_peak_56426 chrX 119737746 119737898 + 5.01205 NA promoter-TSS (NM_014060) promoter-TSS (NM_014060) 78 NM_014060 28985 Hs.102696 NM_014060 MCTS1 MCT-1|MCT1 malignant T cell amplified sequence 1 protein-coding 13-PTNLD9-TUMOR_peak_2227 chr1 77415300 77415427 + 5.01205 NA intron (NM_030965, intron 2 of 4) intron (NM_030965, intron 2 of 4) 82177 NM_030965 81849 Hs.303609 NM_030965 ST6GALNAC5 SIAT7E|ST6GalNAcV ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 protein-coding 13-PTNLD9-TUMOR_peak_55728 chrX 39595615 39595712 + 5.01205 NA Intergenic Intergenic -344635 NR_110385 101927449 Hs.553988 NR_110385 ENSG00000236747 LINC01282 - long intergenic non-protein coding RNA 1282 ncRNA 13-PTNLD9-TUMOR_peak_51690 chr8 118731460 118731596 + 5.01205 NA Intergenic Intergenic 198576 NM_080651 90390 Hs.492612 NM_080651 HPRD:11631 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 13-PTNLD9-TUMOR_peak_27473 chr2 86482179 86482295 + 5.01205 NA intron (NM_001164731, intron 2 of 5) intron (NM_001164731, intron 2 of 5) 55681 NM_016622 51318 Hs.433439 NM_016622 HPRD:14755 MRPL35 L35mt|MRP-L35 mitochondrial ribosomal protein L35 protein-coding 13-PTNLD9-TUMOR_peak_8185 chr10 103030640 103030860 + 5.01205 NA Intergenic L2c|LINE|L2 -7443 NR_120621 101927419 Hs.638503 NR_120621 ENSG00000229649 LOC101927419 - uncharacterized LOC101927419 ncRNA 13-PTNLD9-TUMOR_peak_9168 chr11 14521343 14521438 + 5.01205 NA promoter-TSS (NM_016451) promoter-TSS (NM_016451) 14 NM_016451 1315 Hs.339278 NM_016451 HPRD:02981 COPB1 COPB coatomer protein complex, subunit beta 1 protein-coding 13-PTNLD9-TUMOR_peak_7865 chr10 81268118 81268231 + 5.01205 NA Intergenic Intergenic -4183 NM_001099692 143244 Hs.104825 NM_001099692 ENSG00000253626 EIF5AL1 EIF5AP1|bA342M3.3 eukaryotic translation initiation factor 5A-like 1 protein-coding 13-PTNLD9-TUMOR_peak_31652 chr20 55550052 55550146 + 5.01205 NA Intergenic Intergenic -238653 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_15674 chr14 49707094 49707317 + 5.01205 NA Intergenic L1PA16|LINE|L1 345929 NM_001032 6235 Hs.156367 NM_001032 HPRD:04698 RPS29 DBA13|S29 ribosomal protein S29 protein-coding 13-PTNLD9-TUMOR_peak_26165 chr2 12684137 12684231 + 5.01205 NA intron (NR_110196, intron 4 of 5) intron (NR_110196, intron 4 of 5) -172814 NR_027303 28951 Hs.467751 NM_021643 HPRD:18224 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 13-PTNLD9-TUMOR_peak_33622 chr3 7230391 7230512 + 5.01205 NA intron (NM_181874, intron 2 of 10) MLT1J2|LTR|ERVL-MaLR 327649 NM_000844 2917 Hs.606393 NM_000844 HPRD:04979 GRM7 GLUR7|GPRC1G|MGLU7|MGLUR7|PPP1R87 glutamate receptor, metabotropic 7 protein-coding 13-PTNLD9-TUMOR_peak_55712 chrX 37314235 37314378 + 5.01205 NA 3' UTR (NM_001173489, exon 5 of 5) 3' UTR (NM_001173489, exon 5 of 5) 105723 NM_001173489 5638 Hs.190341 NM_000950 HPRD:05113 PRRG1 PRGP1 proline rich Gla (G-carboxyglutamic acid) 1 protein-coding 13-PTNLD9-TUMOR_peak_41413 chr5 80105422 80105523 + 5.01205 NA intron (NM_002439, intron 19 of 23) intron (NM_002439, intron 19 of 23) -151036 NM_006909 5924 Hs.162129 NM_006909 HPRD:07588 RASGRF2 GRF2|RAS-GRF2 Ras protein-specific guanine nucleotide-releasing factor 2 protein-coding 13-PTNLD9-TUMOR_peak_45791 chr6 99797814 99797910 + 5.01205 NA promoter-TSS (NM_032511) promoter-TSS (NM_032511) -331 NM_032511 84553 Hs.573245 NM_032511 HPRD:12866 FAXC C6orf168|dJ273F20 failed axon connections homolog (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_7884 chr10 82189641 82189745 + 5.01205 NA intron (NM_001243778, intron 5 of 5) intron (NM_001243778, intron 5 of 5) 16118 NM_001243782 84293 Hs.500333 NM_032333 HPRD:12580 FAM213A C10orf58|PAMM family with sequence similarity 213, member A protein-coding 13-PTNLD9-TUMOR_peak_16592 chr14 101213421 101213671 + 5.01205 NA Intergenic Tigger3b|DNA|TcMar-Tigger 20344 NM_003836 8788 Hs.533717 NM_003836 HPRD:01446 DLK1 DLK|DLK-1|Delta1|FA1|PREF1|Pref-1|ZOG|pG2 delta-like 1 homolog (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_54413 chr9 112669815 112669961 + 5.01205 NA intron (NM_001037293, intron 4 of 6) intron (NM_001037293, intron 4 of 6) 127311 NM_007203 445815 Hs.591908 NM_007203 HPRD:09197 PALM2-AKAP2 AKAP2 PALM2-AKAP2 readthrough protein-coding 13-PTNLD9-TUMOR_peak_53022 chr9 33211774 33211917 + 5.01205 NA Intergenic Intergenic -28351 NM_014471 27290 Hs.555934 NM_014471 HPRD:11598 SPINK4 HEL136|PEC-60|PEC60 serine peptidase inhibitor, Kazal type 4 protein-coding 13-PTNLD9-TUMOR_peak_9019 chr11 9809912 9810174 + 5.01205 NA intron (NM_030962, intron 35 of 39) intron (NM_030962, intron 35 of 39) -28963 NR_033972 440028 Hs.677541 NR_033972 ENSG00000245522 LOC440028 - uncharacterized LOC440028 ncRNA 13-PTNLD9-TUMOR_peak_15159 chr13 114238802 114238943 + 5.01205 NA promoter-TSS (NM_007111) promoter-TSS (NM_007111) -131 NR_026580 7027 Hs.79353 NM_007111 HPRD:01792 TFDP1 DP1|DRTF1|Dp-1 transcription factor Dp-1 protein-coding 13-PTNLD9-TUMOR_peak_50312 chr8 22705756 22705893 + 5.01205 NA intron (NM_144962, intron 3 of 6) intron (NM_144962, intron 3 of 6) -29661 NR_125433 101929237 Hs.677838 NR_125433 ENSG00000248738 LOC101929237 - uncharacterized LOC101929237 ncRNA 13-PTNLD9-TUMOR_peak_51364 chr8 98843874 98843968 + 5.01205 NA intron (NM_018407, intron 6 of 6) HERVH-int|LTR|ERV1 -37390 NM_030583 4147 Hs.189445 NM_002380 HPRD:03660 MATN2 - matrilin 2 protein-coding 13-PTNLD9-TUMOR_peak_19836 chr16 79436345 79436524 + 5.01205 NA Intergenic Intergenic 198188 NM_005360 4094 Hs.134859 NM_005360 HPRD:01518 MAF CCA4|c-MAF v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog protein-coding 13-PTNLD9-TUMOR_peak_12579 chr12 41599231 41599328 + 5.01205 NA intron (NM_001164595, intron 3 of 9) L2c|LINE|L2 17029 NM_001164595 29951 Hs.380044 NM_013377 HPRD:15116 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 13-PTNLD9-TUMOR_peak_38262 chr4 45665135 45665229 + 5.01205 NA Intergenic Intergenic 460900 NM_173536 2565 Hs.375051 NM_173536 HPRD:15923 GABRG1 - gamma-aminobutyric acid (GABA) A receptor, gamma 1 protein-coding 13-PTNLD9-TUMOR_peak_2528 chr1 94430507 94430601 + 5.01205 NA Intergenic Intergenic -55542 NM_002061 2730 Hs.315562 NM_002061 GCLM GLCLR glutamate-cysteine ligase, modifier subunit protein-coding 13-PTNLD9-TUMOR_peak_41330 chr5 75682375 75682479 + 5.01205 NA Intergenic Intergenic -16653 NM_006633 10788 Hs.291030 NM_006633 HPRD:09253 IQGAP2 - IQ motif containing GTPase activating protein 2 protein-coding 13-PTNLD9-TUMOR_peak_46584 chr6 170152005 170152230 + 5.01205 NA promoter-TSS (NM_174910) promoter-TSS (NM_174910) 399 NM_001278532 55780 Hs.47546 NM_018341 HPRD:18697 ERMARD C6orf70|PVNH6|dJ266L20.3 ER membrane-associated RNA degradation protein-coding 13-PTNLD9-TUMOR_peak_21798 chr17 63274661 63274765 + 5.01205 NA Intergenic Intergenic 141257 NM_001081955 8787 Hs.664380 NM_003835 HPRD:04962 RGS9 PERRS|RGS9L regulator of G-protein signaling 9 protein-coding 13-PTNLD9-TUMOR_peak_8164 chr10 101945747 101946078 + 5.01205 NA promoter-TSS (NM_006459) promoter-TSS (NM_006459) -98 NM_001100626 10613 Hs.150087 NM_006459 ERLIN1 C10orf69|Erlin-1|KE04|KEO4|SPFH1|SPG62 ER lipid raft associated 1 protein-coding 13-PTNLD9-TUMOR_peak_14888 chr13 77511681 77511775 + 5.01205 NA Intergenic Intergenic 9143 NR_026983 690 Hs.567241 NR_026983 BTF3P11 BTF3L1|HUMBTFB|OCIF|OPG|TNFRSF11B basic transcription factor 3 pseudogene 11 pseudo 13-PTNLD9-TUMOR_peak_4097 chr1 160261223 160261334 + 5.01205 NA exon (NM_004371, exon 31 of 33) exon (NM_004371, exon 31 of 33) -6337 NR_036493 5824 Hs.517232 NM_002857 HPRD:02610 PEX19 D1S2223E|HK33|PBD12A|PMP1|PMPI|PXF|PXMP1 peroxisomal biogenesis factor 19 protein-coding 13-PTNLD9-TUMOR_peak_22989 chr18 39972479 39972587 + 5.01205 NA intron (NR_046456, intron 5 of 7) intron (NR_046456, intron 5 of 7) 205900 NR_046457 284260 Hs.652819 NR_046174 ENSG00000267586 LINC00907 - long intergenic non-protein coding RNA 907 ncRNA 13-PTNLD9-TUMOR_peak_54743 chr9 126325323 126325477 + 5.01205 NA intron (NM_020946, intron 12 of 21) intron (NM_020946, intron 12 of 21) -77499 NR_106972 102465688 NR_106972 MIR7150 hsa-mir-7150 microRNA 7150 ncRNA 13-PTNLD9-TUMOR_peak_26574 chr2 36713927 36714097 + 5.01205 NA intron (NM_016441, intron 7 of 16) intron (NM_016441, intron 7 of 16) 111320 NM_001042548 9637 Hs.258563 NM_005102 HPRD:09213 FEZ2 HUM3CL fasciculation and elongation protein zeta 2 (zygin II) protein-coding 13-PTNLD9-TUMOR_peak_8969 chr11 8673825 8674005 + 5.01205 NA intron (NM_014818, intron 1 of 19) intron (NM_014818, intron 1 of 19) 6468 NM_014818 9866 Hs.130836 NM_014818 ENSG00000166436 TRIM66 C11orf29|TIF1D|TIF1DELTA tripartite motif containing 66 protein-coding 13-PTNLD9-TUMOR_peak_42364 chr5 140810088 140810182 + 5.01205 NA promoter-TSS (NM_003735) promoter-TSS (NM_003735) -23 NM_032094 26025 Hs.368160 NM_003735 HPRD:07538 PCDHGA12 CDH21|FIB3|PCDH-GAMMA-A12 protocadherin gamma subfamily A, 12 protein-coding 13-PTNLD9-TUMOR_peak_36850 chr3 178320759 178320912 + 5.01205 NA intron (NM_001278911, intron 1 of 4) intron (NM_001278911, intron 1 of 4) 44347 NM_001278911 10242 Hs.478368 NM_005832 HPRD:05557 KCNMB2 - potassium large conductance calcium-activated channel, subfamily M, beta member 2 protein-coding 13-PTNLD9-TUMOR_peak_10849 chr11 86443959 86444152 + 5.01205 NA Intergenic SVA_D|Other|Other -58046 NM_001293180 11098 Hs.25338 NM_007173 HPRD:07149 PRSS23 SIG13|SPUVE|ZSIG13 protease, serine, 23 protein-coding 13-PTNLD9-TUMOR_peak_46754 chr7 4255584 4255754 + 5.01205 NA intron (NM_152744, intron 38 of 44) intron (NM_152744, intron 38 of 44) 86352 NM_001079653 221935 Hs.653013 NM_152744 HPRD:07388 SDK1 - sidekick cell adhesion molecule 1 protein-coding 13-PTNLD9-TUMOR_peak_21677 chr17 58434990 58435112 + 5.01205 NA intron (NM_032582, intron 1 of 33) intron (NM_032582, intron 1 of 33) 34535 NM_032582 84669 Hs.132868 NM_032582 USP32 NY-REN-60|USP10 ubiquitin specific peptidase 32 protein-coding 13-PTNLD9-TUMOR_peak_34449 chr3 46951129 46951278 + 5.01205 NA Intergenic Intergenic 27464 NM_001184744 5745 Hs.1019 NM_000316 HPRD:01347 PTH1R PFE|PTHR|PTHR1 parathyroid hormone 1 receptor protein-coding 13-PTNLD9-TUMOR_peak_39655 chr4 153180281 153180559 + 5.01205 NA Intergenic Intergenic -78387 NR_104273 102191832 Hs.712524 NR_104273 ENSG00000270751 DEAR DEspR dual endothelin-1(VEGFsp)/angiotensin II receptor pseudogene pseudo 13-PTNLD9-TUMOR_peak_40502 chr5 27217426 27217630 + 5.01205 NA Intergenic Intergenic -178839 NM_016279 1007 Hs.272212 NM_016279 HPRD:13021 CDH9 - cadherin 9, type 2 (T1-cadherin) protein-coding 13-PTNLD9-TUMOR_peak_32394 chr21 43061512 43061616 + 5.01205 NA Intergenic Intergenic -37898 NR_024367 54090 Hs.570442 NR_024367 LINC00111 C21orf21|NCRNA00111 long intergenic non-protein coding RNA 111 ncRNA 13-PTNLD9-TUMOR_peak_46520 chr6 167009003 167009226 + 5.01205 NA intron (NM_001006932, intron 2 of 21) intron (NM_001006932, intron 2 of 21) 31612 NM_021135 6196 Hs.655277 NM_021135 HPRD:03403 RPS6KA2 HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|pp90RSK3 ribosomal protein S6 kinase, 90kDa, polypeptide 2 protein-coding 13-PTNLD9-TUMOR_peak_38203 chr4 39257122 39257216 + 5.01205 NA intron (NM_025132, intron 26 of 36) intron (NM_025132, intron 26 of 36) 73145 NM_025132 57728 Hs.438482 NM_025132 HPRD:10489 WDR19 ATD5|CED4|DYF-2|IFT144|NPHP13|ORF26|Oseg6|PWDMP|SRTD5 WD repeat domain 19 protein-coding 13-PTNLD9-TUMOR_peak_622 chr1 21635935 21636034 + 5.01205 NA intron (NM_001113348, intron 1 of 18) intron (NM_001113348, intron 1 of 18) 16201 NR_038404 100506801 Hs.663049 NR_038404 ENSG00000231105 LOC100506801 - uncharacterized LOC100506801 ncRNA 13-PTNLD9-TUMOR_peak_55680 chrX 29681269 29681368 + 5.01205 NA intron (NM_014271, intron 5 of 10) intron (NM_014271, intron 5 of 10) -552357 NM_002364 4113 Hs.113824 NM_002364 HPRD:02109 MAGEB2 CT3.2|DAM6|MAGE-XP-2 melanoma antigen family B, 2 protein-coding 13-PTNLD9-TUMOR_peak_45543 chr6 78003180 78003314 + 5.01205 NA Intergenic Intergenic 169873 NM_000863 3351 Hs.123016 NM_000863 HTR1B 5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 5-hydroxytryptamine (serotonin) receptor 1B, G protein-coupled protein-coding 13-PTNLD9-TUMOR_peak_42957 chr5 169910816 169911025 + 5.01205 NA intron (NM_001034838, intron 1 of 7) intron (NM_001034838, intron 1 of 7) -20120 NM_001278339 30820 Hs.484111 NM_014592 HPRD:06879 KCNIP1 KCHIP1|VABP Kv channel interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_17909 chr15 86790913 86791029 + 5.01205 NA exon (NM_152336, exon 6 of 24) exon (NM_152336, exon 6 of 24) 69228 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_34715 chr3 55606104 55606260 + 5.01205 NA intron (NM_015576, intron 16 of 16) intron (NM_015576, intron 16 of 16) -84512 NM_003392 7474 Hs.643085 NM_003392 HPRD:01293 WNT5A hWNT5A wingless-type MMTV integration site family, member 5A protein-coding 13-PTNLD9-TUMOR_peak_8395 chr10 116642618 116642740 + 5.01205 NA intron (NM_001135051, intron 16 of 16) intron (NM_001135051, intron 16 of 16) -55273 NM_139169 142940 Hs.21187 NM_139169 HPRD:18229 TRUB1 PUS4 TruB pseudouridine (psi) synthase family member 1 protein-coding 13-PTNLD9-TUMOR_peak_36314 chr3 148709296 148709443 + 5.01205 NA 5' UTR (NM_001184720, exon 1 of 7) 5' UTR (NM_001184720, exon 1 of 7) 174 NM_004130 2992 Hs.477892 NM_004130 HPRD:06805 GYG1 GSD15|GYG glycogenin 1 protein-coding 13-PTNLD9-TUMOR_peak_2499 chr1 94095962 94096099 + 5.01205 NA intron (NM_001261408, intron 5 of 13) AluJb|SINE|Alu -16328 NM_001261410 8412 Hs.36958 NM_003567 HPRD:05268 BCAR3 NSP2|SH2D3B breast cancer anti-estrogen resistance 3 protein-coding 13-PTNLD9-TUMOR_peak_22122 chr17 75688712 75688806 + 5.01205 NA Intergenic Intergenic 35882 NR_104134 100132174 Hs.640110 NR_104134 LOC100132174 - uncharacterized LOC100132174 ncRNA 13-PTNLD9-TUMOR_peak_22933 chr18 33597820 33597956 + 5.01205 NA intron (NM_018170, intron 6 of 6) intron (NM_018170, intron 6 of 6) 45300 NM_001201474 83608 Hs.37883 NM_031446 HPRD:12688 C18orf21 HsT3108|PNAS-131|XTP13 chromosome 18 open reading frame 21 protein-coding 13-PTNLD9-TUMOR_peak_5497 chr1 223088692 223088865 + 5.01205 NA intron (NM_032890, intron 2 of 9) intron (NM_032890, intron 2 of 9) 100347 NM_032890 84976 Hs.528817 NM_032890 HPRD:06326 DISP1 DISPA dispatched homolog 1 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_50647 chr8 38288842 38288940 + 5.01205 NA intron (NM_001174067, intron 3 of 18) L2b|LINE|L2 36472 NM_001174067 2260 Hs.264887 NM_015850 HPRD:00634 FGFR1 BFGFR|CD331|CEK|FGFBR|FGFR-1|FLG|FLT-2|FLT2|HBGFR|HH2|HRTFDS|KAL2|N-SAM|OGD|bFGF-R-1 fibroblast growth factor receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_17055 chr15 39481303 39481397 + 5.01205 NA Intergenic Intergenic -61535 NM_207445 400360 Hs.376109 NM_207445 HPRD:13437 C15orf54 - chromosome 15 open reading frame 54 protein-coding 13-PTNLD9-TUMOR_peak_15148 chr13 113841769 113841863 + 5.01205 NA intron (NM_001258213, intron 7 of 13) L1M4|LINE|L1 -20691 NM_001278513 8451 Hs.339735 NM_003589 HPRD:07218 CUL4A - cullin 4A protein-coding 13-PTNLD9-TUMOR_peak_785 chr1 27050178 27050333 + 5.01205 NA intron (NM_006015, intron 1 of 19) intron (NM_006015, intron 1 of 19) 27733 NM_139135 8289 Hs.468972 NM_006015 HPRD:04319 ARID1A B120|BAF250|BAF250a|BM029|C1orf4|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1 AT rich interactive domain 1A (SWI-like) protein-coding 13-PTNLD9-TUMOR_peak_18116 chr15 102120142 102120333 + 5.01205 NA Intergenic Intergenic 72357 NM_078474 80213 Hs.288912 NM_025141 HPRD:16554 TM2D3 BLP2 TM2 domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_11291 chr11 114667814 114667964 + 5.01205 NA Intergenic Intergenic 118689 NM_182495 120406 Hs.446760 NM_182495 HPRD:08055 NXPE2 FAM55B neurexophilin and PC-esterase domain family, member 2 protein-coding 13-PTNLD9-TUMOR_peak_25962 chr2 3108951 3109045 + 5.01205 NA intron (NR_110228, intron 3 of 6) LTR5_Hs|LTR|ERVK 20800 NR_110228 101927554 Hs.638446 NR_110228 ENSG00000234423 LINC01250 - long intergenic non-protein coding RNA 1250 ncRNA 13-PTNLD9-TUMOR_peak_20544 chr17 16881351 16881469 + 5.01205 NA Intergenic L1ME3C|LINE|L1 -6008 NM_012452 23495 Hs.158341 NM_012452 HPRD:05365 TNFRSF13B CD267|CVID|CVID2|RYZN|TACI|TNFRSF14B tumor necrosis factor receptor superfamily, member 13B protein-coding 13-PTNLD9-TUMOR_peak_47559 chr7 56084767 56084953 + 5.01205 NA intron (NM_004577, intron 6 of 7) intron (NM_004577, intron 6 of 7) 34408 NM_004577 5723 Hs.512656 NM_004577 HPRD:01406 PSPH PSP|PSPHD phosphoserine phosphatase protein-coding 13-PTNLD9-TUMOR_peak_41344 chr5 76126918 76127140 + 5.01205 NA intron (NM_005242, intron 1 of 1) intron (NM_005242, intron 1 of 1) 12196 NM_005242 2150 Hs.744181 NM_005242 HPRD:02960 F2RL1 GPR11|PAR2 coagulation factor II (thrombin) receptor-like 1 protein-coding 13-PTNLD9-TUMOR_peak_17833 chr15 83349223 83349318 + 5.01205 NA exon (NM_001278511, exon 7 of 25) exon (NM_001278511, exon 7 of 25) 29390 NM_001278511 8120 Hs.199593 NM_004644 HPRD:03699 AP3B2 NAPTB adaptor-related protein complex 3, beta 2 subunit protein-coding 13-PTNLD9-TUMOR_peak_14842 chr13 72455053 72455149 + 5.01205 NA Intergenic Intergenic -13771 NM_004392 1602 Hs.129452 NM_004392 HPRD:16031 DACH1 DACH dachshund family transcription factor 1 protein-coding 13-PTNLD9-TUMOR_peak_46594 chr6 170589497 170589591 + 5.01205 NA TTS (NR_104177) TTS (NR_104177) 7982 NR_104177 401289 Hs.121442 NR_104177 FLJ38122 - uncharacterized LOC401289 ncRNA 13-PTNLD9-TUMOR_peak_8626 chr10 131323884 131324047 + 5.01205 NA intron (NM_002412, intron 1 of 4) intron (NM_002412, intron 1 of 4) 58511 NM_002412 4255 Hs.501522 NM_002412 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 13-PTNLD9-TUMOR_peak_15602 chr14 39687679 39687773 + 5.01205 NA Intergenic L4|LINE|RTE -15399 NM_054024 117153 Hs.287694 NM_054024 HPRD:12149 MIA2 - melanoma inhibitory activity 2 protein-coding 13-PTNLD9-TUMOR_peak_50917 chr8 51956571 51956674 + 5.01205 NA Intergenic Intergenic 765383 NM_144651 137902 Hs.444882 NM_144651 HPRD:08693 PXDNL PMR1|PRM1|VPO2 peroxidasin homolog (Drosophila)-like protein-coding 13-PTNLD9-TUMOR_peak_22849 chr18 28483684 28483808 + 5.01205 NA Intergenic Intergenic 139035 NM_001941 1825 Hs.41690 NM_001941 HPRD:02604 DSC3 CDHF3|DSC|DSC1|DSC2|DSC4|HT-CP desmocollin 3 protein-coding 13-PTNLD9-TUMOR_peak_22951 chr18 34430635 34430791 + 5.01205 NA intron (NM_020776, intron 4 of 9) MER44B|DNA|TcMar-Tigger -21534 NM_015476 25941 Hs.436636 NM_015476 HPRD:12684 TPGS2 C18orf10|L17|PGs2 tubulin polyglutamylase complex subunit 2 protein-coding 13-PTNLD9-TUMOR_peak_10923 chr11 93550642 93550836 + 5.01205 NA Intergenic Intergenic 32929 NM_001144871 387804 Hs.512252 NM_001144871 VSTM5 C11orf90 V-set and transmembrane domain containing 5 protein-coding 13-PTNLD9-TUMOR_peak_27379 chr2 83330915 83331021 + 5.01205 NA Intergenic Intergenic 247041 NR_033423 1720 Hs.169235 NR_033423 ENSG00000168129 LOC1720 - dihydrofolate reductase pseudogene pseudo 13-PTNLD9-TUMOR_peak_21620 chr17 56480158 56480273 + 5.01205 NA intron (NM_017763, intron 2 of 9) intron (NM_017763, intron 2 of 9) 14716 NM_017763 54894 Hs.584916 NM_017763 HPRD:07896 RNF43 RNF124|URCC ring finger protein 43 protein-coding 13-PTNLD9-TUMOR_peak_36837 chr3 177695688 177695782 + 5.01205 NA Intergenic MLT1J|LTR|ERVL-MaLR 161082 NR_110826 102724550 Hs.570526 NR_110826 LOC102724550 - uncharacterized LOC102724550 ncRNA 13-PTNLD9-TUMOR_peak_56342 chrX 109411390 109411486 + 5.01205 NA intron (NM_032227, intron 5 of 6) intron (NM_032227, intron 5 of 6) 56850 NR_004379 692226 NR_004379 SNORD96B U96b small nucleolar RNA, C/D box 96B snoRNA 13-PTNLD9-TUMOR_peak_45338 chr6 53470731 53470878 + 5.01205 NA Intergenic Intergenic -32731 NR_110840 101927136 Hs.509788 NR_110840 ENSG00000231683 LOC101927136 - uncharacterized LOC101927136 ncRNA 13-PTNLD9-TUMOR_peak_56074 chrX 68115223 68115388 + 5.01205 NA Intergenic MIR3|SINE|MIR 66465 NM_004429 1947 Hs.144700 NM_004429 HPRD:02072 EFNB1 CFND|CFNS|EFB1|EFL3|EPLG2|Elk-L|LERK2 ephrin-B1 protein-coding 13-PTNLD9-TUMOR_peak_26646 chr2 39011800 39012038 + 5.01205 NA Intergenic Intergenic 6592 NM_024775 79833 Hs.143818 NM_024775 GEMIN6 - gem (nuclear organelle) associated protein 6 protein-coding 13-PTNLD9-TUMOR_peak_14968 chr13 97762276 97762382 + 5.01205 NA Intergenic Intergenic 69547 NR_125725 103625683 Hs.679591 NR_125725 LINC00456 - long intergenic non-protein coding RNA 456 ncRNA 13-PTNLD9-TUMOR_peak_2442 chr1 91227865 91227959 + 5.01205 NA Intergenic Intergenic -45118 NM_020063 343472 Hs.451956 NM_020063 BARHL2 - BarH-like homeobox 2 protein-coding 13-PTNLD9-TUMOR_peak_9164 chr11 14402568 14402688 + 5.01205 NA Intergenic CpG -16576 NM_001177314 22800 Hs.502004 NM_012250 HPRD:02518 RRAS2 TC21 related RAS viral (r-ras) oncogene homolog 2 protein-coding 13-PTNLD9-TUMOR_peak_8127 chr10 99587691 99587816 + 5.01205 NA TTS (NR_108035) TTS (NR_108035) 21802 NR_108035 100505561 Hs.351904 NR_108035 LINC00866 - long intergenic non-protein coding RNA 866 ncRNA 13-PTNLD9-TUMOR_peak_54976 chr9 136133574 136133691 + 5.01205 NA intron (NM_020469, intron 4 of 6) intron (NM_020469, intron 4 of 6) 16998 NM_020469 28 Hs.654423 NM_020469 ABO A3GALNT|A3GALT1|GTB|NAGAT ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase) protein-coding 13-PTNLD9-TUMOR_peak_7547 chr10 68685733 68685827 + 5.01205 NA promoter-TSS (NM_178011) promoter-TSS (NM_178011) -12 NM_178011 347731 Hs.652155 NM_178011 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 13-PTNLD9-TUMOR_peak_30110 chr2 238037062 238037229 + 5.01205 NA Intergenic Intergenic 43061 NM_006710 10920 Hs.531713 NM_006710 COPS8 COP9|CSN8|SGN8 COP9 signalosome subunit 8 protein-coding 13-PTNLD9-TUMOR_peak_17443 chr15 64995459 64995611 + 5.01205 NA promoter-TSS (NM_002537) promoter-TSS (NM_002537) -55 NM_002537 4947 Hs.744924 NM_002537 HPRD:11966 OAZ2 AZ2 ornithine decarboxylase antizyme 2 protein-coding 13-PTNLD9-TUMOR_peak_44072 chr6 21033851 21033947 + 5.01205 NA intron (NM_017774, intron 11 of 15) intron (NM_017774, intron 11 of 15) 478224 NR_103790 100874531 Hs.112750 NR_103790 LINC00581 - long intergenic non-protein coding RNA 581 ncRNA 13-PTNLD9-TUMOR_peak_1813 chr1 53809519 53809641 + 5.01205 NA Intergenic MIRb|SINE|MIR -15759 NM_001018054 7804 Hs.280387 NM_004631 LRP8 APOER2|HSZ75190|LRP-8|MCI1 low density lipoprotein receptor-related protein 8, apolipoprotein e receptor protein-coding 13-PTNLD9-TUMOR_peak_55660 chrX 24779622 24779725 + 5.01205 NA intron (NM_016937, intron 26 of 36) intron (NM_016937, intron 26 of 36) 17115 NR_003007 677773 Hs.689695 NR_003007 SCARNA23 ACA12 small Cajal body-specific RNA 23 ncRNA 13-PTNLD9-TUMOR_peak_17592 chr15 71704223 71704423 + 5.01205 NA intron (NM_024817, intron 6 of 16) intron (NM_024817, intron 6 of 16) -135218 NM_001286429 79875 Hs.387057 NM_024817 HPRD:07835 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin, type I, domain containing 4 protein-coding 13-PTNLD9-TUMOR_peak_16498 chr14 95214988 95215097 + 5.01205 NA Intergenic AluJr|SINE|Alu 21457 NM_173849 145258 Hs.440438 NM_173849 HPRD:15928 GSC SAMS goosecoid homeobox protein-coding 13-PTNLD9-TUMOR_peak_26854 chr2 47371010 47371124 + 5.01205 NA intron (NM_001163561, intron 3 of 6) intron (NM_001163561, intron 3 of 6) 11450 NM_173649 285051 Hs.531575 NM_173649 HPRD:08273 C2orf61 - chromosome 2 open reading frame 61 protein-coding 13-PTNLD9-TUMOR_peak_26002 chr2 7832976 7833133 + 5.01205 NA Intergenic Intergenic 206732 NR_110256 101929551 Hs.116006 NR_110256 LOC101929551 - uncharacterized LOC101929551 ncRNA 13-PTNLD9-TUMOR_peak_46347 chr6 152702341 152702541 + 5.01205 NA exon (NM_033071, exon 56 of 146) exon (NM_033071, exon 56 of 146) 776 NR_120501 100505475 Hs.571203 NR_120501 SYNE1-AS1 - SYNE1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_24978 chr19 40653616 40653769 + 5.01205 NA Intergenic Intergenic -43959 NM_002446 4294 Hs.466743 NM_002446 HPRD:02533 MAP3K10 MEKK10|MLK2|MST mitogen-activated protein kinase kinase kinase 10 protein-coding 13-PTNLD9-TUMOR_peak_46493 chr6 163042464 163042558 + 5.01205 NA intron (NM_004562, intron 1 of 11) MLT1H2|LTR|ERVL-MaLR -105653 NM_001080378 135138 Hs.25791 NM_152410 HPRD:07465 PACRG GLUP|HAK005771|PARK2CRG PARK2 co-regulated protein-coding 13-PTNLD9-TUMOR_peak_5445 chr1 221290959 221291161 + 5.01205 NA Intergenic Intergenic 218578 NR_024236 400804 Hs.722626 NR_024236 HPRD:17386 C1orf140 - uncharacterized LOC400804 ncRNA 13-PTNLD9-TUMOR_peak_38042 chr4 16420461 16420586 + 5.01205 NA Intergenic MER5A|DNA|hAT-Charlie 192237 NR_027697 202020 Hs.445315 NM_152684 HPRD:08263 TAPT1-AS1 - TAPT1 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_39512 chr4 143768546 143768644 + 5.01205 NA promoter-TSS (NM_003866) promoter-TSS (NM_003866) -991 NM_001101669 8821 Hs.531403 NM_003866 HPRD:06322 INPP4B - inositol polyphosphate-4-phosphatase, type II, 105kDa protein-coding 13-PTNLD9-TUMOR_peak_10640 chr11 74959808 74959927 + 5.01205 NA Intergenic Intergenic 7917 NM_001195528 100507050 Hs.577323 NM_001195528 ENSG00000261594 TPBGL - trophoblast glycoprotein-like protein-coding 13-PTNLD9-TUMOR_peak_5024 chr1 202191560 202191674 + 5.01205 NA intron (NM_001017404, intron 1 of 15) intron (NM_001017404, intron 1 of 15) 8334 NM_001017404 59352 Hs.497402 NM_021636 HPRD:05974 LGR6 GPCR|VTS20631 leucine-rich repeat containing G protein-coupled receptor 6 protein-coding 13-PTNLD9-TUMOR_peak_25018 chr19 41361247 41361420 + 5.01205 NA Intergenic L2|LINE|L2 -4981 NM_000762 1548 Hs.250615 NM_000762 HPRD:00420 CYP2A6 CPA6|CYP2A|CYP2A3|CYPIIA6|P450C2A|P450PB cytochrome P450, family 2, subfamily A, polypeptide 6 protein-coding 13-PTNLD9-TUMOR_peak_45936 chr6 114316174 114316279 + 5.01205 NA Intergenic Intergenic -23867 NR_033441 3066 Hs.3352 NM_001527 HPRD:05521 HDAC2 HD2|RPD3|YAF1 histone deacetylase 2 protein-coding 13-PTNLD9-TUMOR_peak_13577 chr12 100820976 100821070 + 5.01205 NA Intergenic L2a|LINE|L2 -46528 NM_001206979 9971 Hs.282735 NM_005123 HPRD:04827 NR1H4 BAR|FXR|HRR-1|HRR1|RIP14 nuclear receptor subfamily 1, group H, member 4 protein-coding 13-PTNLD9-TUMOR_peak_31034 chr20 38514708 38514842 + 5.01205 NA Intergenic Intergenic -118328 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 - long intergenic non-protein coding RNA 1370 ncRNA 13-PTNLD9-TUMOR_peak_29777 chr2 216768880 216769056 + 5.01205 NA Intergenic Intergenic -60709 NR_037195 646324 Hs.655713 NR_037195 ENSG00000235770 LINC00607 - long intergenic non-protein coding RNA 607 ncRNA 13-PTNLD9-TUMOR_peak_28757 chr2 153323346 153323643 + 5.01205 NA intron (NM_052905, intron 1 of 25) intron (NM_052905, intron 1 of 25) 131743 NM_052905 114793 Hs.654630 NM_052905 HPRD:13545 FMNL2 FHOD2 formin-like 2 protein-coding 13-PTNLD9-TUMOR_peak_11433 chr11 121048469 121048563 + 5.01205 NA intron (NM_005422, intron 19 of 22) L1PA3|LINE|L1 75141 NM_005422 7007 Hs.248162 NM_005422 HPRD:03985 TECTA DFNA12|DFNA8|DFNB21 tectorin alpha protein-coding 13-PTNLD9-TUMOR_peak_11560 chr11 126485531 126485668 + 5.01205 NA intron (NM_001301097, intron 1 of 15) intron (NM_001301097, intron 1 of 15) -37074 NR_120532 101929427 Hs.600341 NR_120532 ENSG00000254607 LOC101929427 - uncharacterized LOC101929427 ncRNA 13-PTNLD9-TUMOR_peak_34551 chr3 49523122 49523324 + 5.01205 NA intron (NM_001177640, intron 2 of 3) AluJr|SINE|Alu 15658 NM_001177644 1605 Hs.76111 NM_004393 HPRD:00546 DAG1 156DAG|A3a|AGRNR|DAG|MDDGC7|MDDGC9 dystroglycan 1 (dystrophin-associated glycoprotein 1) protein-coding 13-PTNLD9-TUMOR_peak_29811 chr2 218416410 218416522 + 5.01205 NA intron (NR_026597, intron 2 of 12) intron (NR_026597, intron 2 of 12) 204850 NR_026597 729582 Hs.572788 NR_026597 ENSG00000231672 DIRC3 - disrupted in renal carcinoma 3 ncRNA 13-PTNLD9-TUMOR_peak_18376 chr16 4539142 4539236 + 5.01205 NA intron (NM_001286269, intron 2 of 6) intron (NM_001286269, intron 2 of 6) -6631 NM_001286270 3163 Hs.284279 NM_002134 HPRD:00783 HMOX2 HO-2 heme oxygenase (decycling) 2 protein-coding 13-PTNLD9-TUMOR_peak_39329 chr4 129456776 129456870 + 5.01205 NA Intergenic L1PA7|LINE|L1 -246839 NM_006320 10424 Hs.507910 NM_006320 HPRD:09665 PGRMC2 DG6|PMBP progesterone receptor membrane component 2 protein-coding 13-PTNLD9-TUMOR_peak_33157 chr22 33185054 33185162 + 5.01205 NA intron (NM_001135774, intron 6 of 13) intron (NM_001135774, intron 6 of 13) -11694 NM_000362 7078 Hs.644633 NM_000362 HPRD:01785 TIMP3 HSMRK222|K222|K222TA2|SFD TIMP metallopeptidase inhibitor 3 protein-coding 13-PTNLD9-TUMOR_peak_40219 chr5 4387601 4387695 + 5.01205 NA Intergenic Intergenic -385946 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LOC101929153 - uncharacterized LOC101929153 ncRNA 13-PTNLD9-TUMOR_peak_43784 chr6 11586895 11587051 + 5.01205 NA Intergenic Intergenic 48513 NM_001100829 100113407 Hs.146317 NM_001100829 ENSG00000205269 TMEM170B - transmembrane protein 170B protein-coding 13-PTNLD9-TUMOR_peak_48848 chr7 114529852 114529946 + 5.01205 NA Intergenic Intergenic -32310 NM_001166346 29969 Hs.741413 NM_199072 HPRD:17103 MDFIC HIC MyoD family inhibitor domain containing protein-coding 13-PTNLD9-TUMOR_peak_32378 chr21 42532048 42532299 + 5.01205 NA Intergenic Intergenic -7311 NR_036167 100423023 NR_036167 miRBase:MI0014245 MIR3197 - microRNA 3197 ncRNA 13-PTNLD9-TUMOR_peak_10809 chr11 85522247 85522341 + 5.01205 NA promoter-TSS (NM_032943) promoter-TSS (NM_032943) -92 NM_001289608 54843 Hs.369520 NM_032379 HPRD:10260 SYTL2 CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A synaptotagmin-like 2 protein-coding 13-PTNLD9-TUMOR_peak_33028 chr22 27619606 27619861 + 5.01205 NA Intergenic MLT1F1|LTR|ERVL-MaLR 320478 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000223704 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 13-PTNLD9-TUMOR_peak_15104 chr13 110669911 110670063 + 5.01205 NA Intergenic Intergenic -231073 NM_003749 8660 Hs.442344 NM_003749 HPRD:02878 IRS2 IRS-2 insulin receptor substrate 2 protein-coding 13-PTNLD9-TUMOR_peak_15670 chr14 49241143 49241308 + 5.01205 NA Intergenic Intergenic 811909 NM_001032 6235 Hs.156367 NM_001032 HPRD:04698 RPS29 DBA13|S29 ribosomal protein S29 protein-coding 13-PTNLD9-TUMOR_peak_1182 chr1 38008080 38008207 + 5.01205 NA intron (NM_024700, intron 2 of 3) AluJb|SINE|Alu 11802 NM_024700 79753 Hs.47232 NM_024700 HPRD:06999 SNIP1 PMRED Smad nuclear interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_31325 chr20 47147650 47147762 + 5.01205 NA Intergenic MLT1J|LTR|ERVL-MaLR 159052 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 13-PTNLD9-TUMOR_peak_9863 chr11 56894417 56894641 + 5.01205 NA Intergenic Intergenic -54692 NM_001005210 219527 Hs.199853 NM_001005210 HPRD:16990 LRRC55 - leucine rich repeat containing 55 protein-coding 13-PTNLD9-TUMOR_peak_50058 chr8 10009831 10010028 + 5.01205 NA intron (NM_001199729, intron 2 of 6) intron (NM_001199729, intron 2 of 6) 56867 NM_001135671 4482 Hs.490981 NM_012331 HPRD:03152 MSRA PMSR methionine sulfoxide reductase A protein-coding 13-PTNLD9-TUMOR_peak_17319 chr15 55223571 55223765 + 5.01205 NA Intergenic L1HS|LINE|L1 265563 NM_016304 51187 Hs.274772 NM_016304 RSL24D1 C15orf15|HRP-L30-iso|L30|RLP24|RPL24|RPL24L|TVAS3 ribosomal L24 domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_19817 chr16 78245949 78246043 + 5.01205 NA intron (NM_001291997, intron 4 of 7) intron (NM_001291997, intron 4 of 7) 112686 NR_120435 51741 Hs.461453 NM_016373 HPRD:05501 WWOX D16S432E|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 13-PTNLD9-TUMOR_peak_8970 chr11 8692950 8693077 + 5.01205 NA Intergenic Intergenic -10982 NM_000990 6157 Hs.523463 NM_000990 HPRD:04701 RPL27A L27A ribosomal protein L27a protein-coding 13-PTNLD9-TUMOR_peak_11561 chr11 126517713 126517883 + 5.01205 NA intron (NM_001301097, intron 1 of 15) L2a|LINE|L2 -4875 NR_120532 101929427 Hs.600341 NR_120532 ENSG00000254607 LOC101929427 - uncharacterized LOC101929427 ncRNA 13-PTNLD9-TUMOR_peak_9658 chr11 45315277 45315371 + 5.01205 NA Intergenic Intergenic -7440 NM_001247987 57586 Hs.436643 NM_020826 HPRD:12128 SYT13 - synaptotagmin XIII protein-coding 13-PTNLD9-TUMOR_peak_51337 chr8 96497581 96497739 + 5.01205 NA intron (NR_038207, intron 2 of 2) intron (NR_038207, intron 2 of 2) -216198 NM_177965 157657 Hs.548157 NM_177965 HPRD:14104 C8orf37 CORD16|RP64|smalltalk chromosome 8 open reading frame 37 protein-coding 13-PTNLD9-TUMOR_peak_31029 chr20 38260347 38260441 + 5.01205 NA Intergenic Intergenic -372709 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 - long intergenic non-protein coding RNA 1370 ncRNA 13-PTNLD9-TUMOR_peak_17454 chr15 65349629 65349746 + 5.01205 NA intron (NM_016563, intron 4 of 4) intron (NM_016563, intron 4 of 4) 10701 NM_016563 51285 Hs.27018 NM_016563 HPRD:15217 RASL12 RIS RAS-like, family 12 protein-coding 13-PTNLD9-TUMOR_peak_55935 chrX 57312925 57313150 + 5.01205 NA promoter-TSS (NM_174912) promoter-TSS (NM_174912) -73 NM_174912 158584 Hs.496205 NM_174912 HPRD:06551 FAAH2 AMDD fatty acid amide hydrolase 2 protein-coding 13-PTNLD9-TUMOR_peak_38865 chr4 89619017 89619187 + 5.01205 NA promoter-TSS (NM_153757) promoter-TSS (NM_153757) -79 NM_153757 266812 Hs.12554 NM_153757 HPRD:17626 NAP1L5 DRLM nucleosome assembly protein 1-like 5 protein-coding 13-PTNLD9-TUMOR_peak_26428 chr2 28561393 28561495 + 5.01205 NA 3' UTR (NM_001261840, exon 12 of 12) 3' UTR (NM_001261840, exon 12 of 12) -28118 NR_038319 100505716 Hs.679092 NR_038319 ENSG00000223522 LOC100505716 - uncharacterized LOC100505716 ncRNA 13-PTNLD9-TUMOR_peak_693 chr1 24336094 24336188 + 5.01205 NA Intergenic Intergenic -29188 NM_006625 10772 Hs.3530 NM_006625 HPRD:05562 SRSF10 FUSIP1|FUSIP2|NSSR|PPP1R149|SFRS13|SFRS13A|SRp38|SRrp40|TASR|TASR1|TASR2 serine/arginine-rich splicing factor 10 protein-coding 13-PTNLD9-TUMOR_peak_20495 chr17 12318520 12318697 + 5.01205 NA Intergenic Intergenic -134677 NR_034145 284034 Hs.376614 NR_034144 HPRD:08176 LINC00670 - long intergenic non-protein coding RNA 670 ncRNA 13-PTNLD9-TUMOR_peak_38260 chr4 45624092 45624274 + 5.01205 NA Intergenic MLT1D|LTR|ERVL-MaLR 501899 NM_173536 2565 Hs.375051 NM_173536 HPRD:15923 GABRG1 - gamma-aminobutyric acid (GABA) A receptor, gamma 1 protein-coding 13-PTNLD9-TUMOR_peak_12489 chr12 33269397 33269491 + 5.01205 NA Intergenic LTR80A|LTR|ERVL -219664 NM_001005242 5318 Hs.164384 NM_004572 HPRD:04177 PKP2 ARVD9 plakophilin 2 protein-coding 13-PTNLD9-TUMOR_peak_25807 chr19 58790665 58790893 + 5.01205 NA intron (NM_021089, intron 1 of 3) CpG 461 NM_021089 7554 Hs.590941 NM_021089 HPRD:01919 ZNF8 HF.18|Zfp128 zinc finger protein 8 protein-coding 13-PTNLD9-TUMOR_peak_46455 chr6 160451225 160451495 + 5.01205 NA intron (NM_000876, intron 7 of 47) intron (NM_000876, intron 7 of 47) -22664 NR_047511 100271873 Hs.742166 NR_047511 ENSG00000268257 AIRN AIR|IGF2R-AS|IGF2R-AS1|IGF2RAS|NCRNA00088 antisense of IGF2R non-protein coding RNA ncRNA 13-PTNLD9-TUMOR_peak_19782 chr16 75530454 75530548 + 5.01205 NA Intergenic Intergenic -1575 NM_021615 4166 Hs.655622 NM_021615 CHST6 MCDC1 carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 6 protein-coding 13-PTNLD9-TUMOR_peak_34714 chr3 55558999 55559146 + 5.01205 NA intron (NM_015576, intron 16 of 16) intron (NM_015576, intron 16 of 16) -37402 NM_003392 7474 Hs.643085 NM_003392 HPRD:01293 WNT5A hWNT5A wingless-type MMTV integration site family, member 5A protein-coding 13-PTNLD9-TUMOR_peak_38800 chr4 86728799 86728980 + 5.01205 NA intron (NM_001042669, intron 1 of 7) MamGypLTR1b|LTR|Gypsy -20157 NM_001287805 83478 Hs.444229 NM_031305 HPRD:09804 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 13-PTNLD9-TUMOR_peak_55713 chrX 37380478 37380572 + 5.01205 NA Intergenic Intergenic -50297 NM_001170331 347404 Hs.521932 NM_198511 HPRD:13957 LANCL3 - LanC lantibiotic synthetase component C-like 3 (bacterial) protein-coding 13-PTNLD9-TUMOR_peak_17548 chr15 70053323 70053490 + 5.01205 NA Intergenic Intergenic -74167 NR_026764 414926 Hs.569502 NR_026764 ENSG00000259703 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 13-PTNLD9-TUMOR_peak_16712 chr14 106548752 106548858 + 5.01205 NA Intergenic MER77|LTR|ERVL -110447 NR_002224 8755 Hs.662288 NR_002224 ENSG00000233988 ADAM6 C14orf96|tMDCIV ADAM metallopeptidase domain 6, pseudogene pseudo 13-PTNLD9-TUMOR_peak_15011 chr13 100224525 100224620 + 5.01205 NA Intergenic Intergenic -34346 NR_104592 171425 Hs.655642 NM_206808 HPRD:10838 CLYBL CLB citrate lyase beta like protein-coding 13-PTNLD9-TUMOR_peak_4791 chr1 186631987 186632135 + 5.01205 NA Intergenic Intergenic 17498 NM_000963 5743 Hs.196384 NM_000963 HPRD:02599 PTGS2 COX-2|COX2|GRIPGHS|PGG/HS|PGHS-2|PHS-2|hCox-2 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase) protein-coding 13-PTNLD9-TUMOR_peak_51204 chr8 82106271 82106478 + 5.01205 NA Intergenic AmnSINE1|SINE|Deu -82071 NM_018440 55824 Hs.266175 NM_018440 HPRD:05772 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 13-PTNLD9-TUMOR_peak_21797 chr17 63217025 63217119 + 5.01205 NA intron (NM_001081955, intron 17 of 18) intron (NM_001081955, intron 17 of 18) 83616 NM_001081955 8787 Hs.664380 NM_003835 HPRD:04962 RGS9 PERRS|RGS9L regulator of G-protein signaling 9 protein-coding 13-PTNLD9-TUMOR_peak_54086 chr9 97867966 97868165 + 5.01205 NA intron (NM_000136, intron 14 of 14) L1MB4|LINE|L1 -19689 NR_036109 100422842 NR_036109 miRBase:MI0014181 MIR3074 - microRNA 3074 ncRNA 13-PTNLD9-TUMOR_peak_33166 chr22 35275173 35275267 + 5.01205 NA Intergenic Intergenic -186910 NM_001008494 91464 Hs.567637 NM_001008494 HPRD:17957 ISX Pix-1|RAXLX intestine-specific homeobox protein-coding 13-PTNLD9-TUMOR_peak_16267 chr14 75122729 75123011 + 5.01205 NA Intergenic Intergenic -43836 NM_000428 4053 Hs.512776 NM_000428 HPRD:03650 LTBP2 C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3 latent transforming growth factor beta binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_14693 chr13 44887200 44887306 + 5.01205 NA Intergenic MARNA|DNA|TcMar-Mariner -60725 NM_001010897 387923 Hs.377972 NM_001010897 HPRD:16590 SERP2 C13orf21|bA269C23.1 stress-associated endoplasmic reticulum protein family member 2 protein-coding 13-PTNLD9-TUMOR_peak_7573 chr10 70360161 70360298 + 5.01205 NA intron (NM_030625, intron 2 of 11) intron (NM_030625, intron 2 of 11) 40112 NM_030625 80312 Hs.567594 NM_030625 HPRD:09694 TET1 CXXC6|LCX|bA119F7.1 tet methylcytosine dioxygenase 1 protein-coding 13-PTNLD9-TUMOR_peak_2002 chr1 61890204 61890337 + 5.01205 NA intron (NM_005595, intron 9 of 9) intron (NM_005595, intron 9 of 9) -171080 NR_104180 645030 Hs.632410 NR_104180 NFIA-AS1 - NFIA antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_20899 chr17 34621461 34621564 + 5.01205 NA Intergenic MLT1J-int|LTR|ERVL-MaLR 4209 NM_001001437 414062 Hs.454713 NM_001001437 HPRD:14426 CCL3L3 464.2|D17S1718|G0S19-2|LD78|LD78BETA|SCYA3L|SCYA3L1 chemokine (C-C motif) ligand 3-like 3 protein-coding 13-PTNLD9-TUMOR_peak_46359 chr6 154876214 154876519 + 5.01205 NA Intergenic Intergenic -44613 NM_173515 154043 Hs.16064 NM_173515 CNKSR3 MAGI1 CNKSR family member 3 protein-coding 13-PTNLD9-TUMOR_peak_33081 chr22 30555984 30556094 + 5.01205 NA intron (NM_152510, intron 10 of 10) intron (NM_152510, intron 10 of 10) -79570 NR_110541 101929664 Hs.592197 NR_110541 ENSG00000227117 HORMAD2-AS1 MTMR3-AS1 HORMAD2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_52109 chr8 131916960 131917054 + 5.01205 NA intron (NM_001115, intron 6 of 17) Tigger12c|DNA|TcMar-Tigger 135828 NM_001115 114 Hs.591859 NM_001115 HPRD:00051 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 (brain) protein-coding 13-PTNLD9-TUMOR_peak_2383 chr1 88482747 88482887 + 5.01205 NA Intergenic Intergenic -645479 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 13-PTNLD9-TUMOR_peak_20913 chr17 35213545 35213746 + 5.01205 NA Intergenic Tigger3c|DNA|TcMar-Tigger -81127 NM_005568 3975 Hs.443727 NM_005568 HPRD:09067 LHX1 LIM-1|LIM1 LIM homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_35282 chr3 108024750 108024874 + 5.01205 NA intron (NM_007072, intron 1 of 9) LTR16B|LTR|ERVL 3480 NM_007072 11148 Hs.252351 NM_007072 HPRD:05082 HHLA2 B7H7 HERV-H LTR-associating 2 protein-coding 13-PTNLD9-TUMOR_peak_18673 chr16 19107154 19107347 + 5.01205 NA Intergenic Intergenic -18004 NM_001034841 162073 Hs.530899 NM_001034841 HPRD:18743 ITPRIPL2 - inositol 1,4,5-trisphosphate receptor interacting protein-like 2 protein-coding 13-PTNLD9-TUMOR_peak_26472 chr2 29829125 29829226 + 5.01205 NA intron (NM_004304, intron 3 of 28) intron (NM_004304, intron 3 of 28) 315302 NM_004304 238 Hs.654469 NM_004304 HPRD:00104 ALK CD246|NBLST3 anaplastic lymphoma receptor tyrosine kinase protein-coding 13-PTNLD9-TUMOR_peak_30398 chr20 10060730 10060824 + 5.01205 NA intron (NR_040710, intron 3 of 4) intron (NR_040710, intron 3 of 4) 45080 NM_198798 63926 Hs.70903 NM_022096 HPRD:10652 ANKEF1 ANKRD5|dJ839B4.6 ankyrin repeat and EF-hand domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_54945 chr9 134378264 134378529 + 5.01205 NA 5' UTR (NM_007171, exon 1 of 20) 5' UTR (NM_007171, exon 1 of 20) 107 NM_001077365 10585 Hs.522449 NM_007171 HPRD:06305 POMT1 LGMD2K|MDDGA1|MDDGB1|MDDGC1|RT protein-O-mannosyltransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_45375 chr6 56302461 56302626 + 5.01205 NA intron (NR_046940, intron 2 of 5) intron (NR_046940, intron 2 of 5) -190165 NM_030820 81578 Hs.47629 NM_030820 HPRD:09884 COL21A1 COLA1L|dJ682J15.1|dJ708F5.1 collagen, type XXI, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_40988 chr5 59082468 59082562 + 5.01205 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) -18077 NM_001197218 5144 Hs.117545 NM_006203 HPRD:02530 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D, cAMP-specific protein-coding 13-PTNLD9-TUMOR_peak_53988 chr9 94195638 94195769 + 5.01205 NA Intergenic Intergenic -8795 NM_001290000 4783 Hs.79334 NM_005384 HPRD:05619 NFIL3 E4BP4|IL3BP1|NF-IL3A|NFIL3A nuclear factor, interleukin 3 regulated protein-coding 13-PTNLD9-TUMOR_peak_36052 chr3 136278851 136279033 + 5.01205 NA intron (NM_005862, intron 5 of 33) intron (NM_005862, intron 5 of 33) 192303 NM_005862 10274 Hs.412586 NM_005862 HPRD:05076 STAG1 SA1|SCC3A stromal antigen 1 protein-coding 13-PTNLD9-TUMOR_peak_48296 chr7 91686810 91686904 + 5.01205 NA intron (NM_147185, intron 22 of 49) intron (NM_147185, intron 22 of 49) 76983 NM_000786 1595 Hs.417077 NM_000786 HPRD:03381 CYP51A1 CP51|CYP51|CYPL1|LDM|P450-14DM|P450L1 cytochrome P450, family 51, subfamily A, polypeptide 1 protein-coding 13-PTNLD9-TUMOR_peak_17405 chr15 62917416 62917533 + 5.01205 NA Intergenic Intergenic 19906 NR_026897 197003 Hs.352253 NM_152648 ENSG00000259458 MGC15885 - uncharacterized protein MGC15885 ncRNA 13-PTNLD9-TUMOR_peak_41882 chr5 123121491 123121585 + 5.01205 NA Intergenic Intergenic 240427 NM_004384 1456 Hs.129206 NM_004384 HPRD:05034 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1, gamma 3 protein-coding 13-PTNLD9-TUMOR_peak_8987 chr11 8861437 8861624 + 5.01205 NA intron (NM_005418, intron 2 of 22) intron (NM_005418, intron 2 of 22) -28648 NM_139157 6764 Hs.117715 NM_005418 HPRD:00780 ST5 DENND2B|HTS1|p126 suppression of tumorigenicity 5 protein-coding 13-PTNLD9-TUMOR_peak_14747 chr13 49672442 49672623 + 5.01205 NA intron (NR_103528, intron 3 of 25) intron (NR_103528, intron 3 of 25) -11907 NM_014923 22862 Hs.508010 NM_014923 HPRD:13548 FNDC3A FNDC3|HUGO|bA203I16.1|bA203I16.5 fibronectin type III domain containing 3A protein-coding 13-PTNLD9-TUMOR_peak_35125 chr3 95075864 95075958 + 5.01205 NA Intergenic LTR2B|LTR|ERV1 326126 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_4234 chr1 164756653 164756747 + 5.01205 NA intron (NM_001204961, intron 2 of 7) intron (NM_001204961, intron 2 of 7) -12822 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 13-PTNLD9-TUMOR_peak_27940 chr2 107847109 107847203 + 5.01205 NA Intergenic L1PBa|LINE|L1 -343593 NM_032528 84620 Hs.98265 NM_032528 HPRD:12237 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactosamide alpha-2,6-sialyltranferase 2 protein-coding 13-PTNLD9-TUMOR_peak_8870 chr11 3695447 3695595 + 5.01205 NA TTS (NM_016320) TTS (NM_016320) -2907 NM_020402 57053 Hs.732806 NM_020402 HPRD:09395 CHRNA10 - cholinergic receptor, nicotinic, alpha 10 (neuronal) protein-coding 13-PTNLD9-TUMOR_peak_29939 chr2 227343034 227343252 + 5.01205 NA Intergenic Intergenic 180366 NR_049887 100847053 NR_049887 miRBase:MI0019309 MIR5702 - microRNA 5702 ncRNA 13-PTNLD9-TUMOR_peak_13396 chr12 79801909 79802003 + 5.01205 NA intron (NM_005639, intron 9 of 10) intron (NM_005639, intron 9 of 10) -11081 NR_031700 100302136 NR_031700 MIR1252 MIRN1252|hsa-mir-1252 microRNA 1252 ncRNA 13-PTNLD9-TUMOR_peak_42459 chr5 142965721 142965815 + 5.01205 NA Intergenic Intergenic -93657 NR_049829 100846991 NR_049829 miRBase:MI0018176 MIR5197 - microRNA 5197 ncRNA 13-PTNLD9-TUMOR_peak_42424 chr5 141928431 141928558 + 5.01205 NA Intergenic Intergenic 65232 NM_033137 2246 Hs.483635 NM_000800 HPRD:00567 FGF1 AFGF|ECGF|ECGF-beta|ECGFA|ECGFB|FGF-1|FGF-alpha|FGFA|GLIO703|HBGF-1|HBGF1 fibroblast growth factor 1 (acidic) protein-coding 13-PTNLD9-TUMOR_peak_17291 chr15 52161380 52161474 + 5.01205 NA exon (NM_014547, exon 3 of 10) exon (NM_014547, exon 3 of 10) 39602 NM_014547 29766 Hs.4998 NM_014547 HPRD:10389 TMOD3 UTMOD tropomodulin 3 (ubiquitous) protein-coding 13-PTNLD9-TUMOR_peak_50126 chr8 13424235 13424439 + 5.01205 NA promoter-TSS (NM_001007090) promoter-TSS (NM_001007090) -15 NM_001007090 157773 Hs.104941 NM_001007090 HPRD:16922 C8orf48 - chromosome 8 open reading frame 48 protein-coding 13-PTNLD9-TUMOR_peak_42509 chr5 146614484 146614593 + 5.01205 NA promoter-TSS (NM_001287740) promoter-TSS (NM_001287740) -41 NM_001112724 202374 Hs.585069 NM_145001 HPRD:15445 STK32A YANK1 serine/threonine kinase 32A protein-coding 13-PTNLD9-TUMOR_peak_19539 chr16 66685011 66685109 + 5.01205 NA intron (NM_178818, intron 1 of 4) intron (NM_178818, intron 1 of 4) 45550 NM_181521 146223 Hs.643961 NM_178818 HPRD:07435 CMTM4 CKLFSF4 CKLF-like MARVEL transmembrane domain containing 4 protein-coding 13-PTNLD9-TUMOR_peak_33435 chr22 46307938 46308131 + 5.01205 NA Intergenic Intergenic 64974 NM_058238 7477 Hs.512714 NM_058238 HPRD:03573 WNT7B - wingless-type MMTV integration site family, member 7B protein-coding 13-PTNLD9-TUMOR_peak_41232 chr5 72016166 72016274 + 5.01205 NA Intergenic MIRb|SINE|MIR -59724 NR_105007 102477328 Hs.254516 NR_105007 LOC102477328 - uncharacterized LOC102477328 ncRNA 13-PTNLD9-TUMOR_peak_14673 chr13 43597752 43597941 + 5.01205 NA exon (NM_013238, exon 1 of 6) exon (NM_013238, exon 1 of 6) 484 NM_013238 29103 Hs.438830 NM_013238 HPRD:13238 DNAJC15 DNAJD1|HSD18|MCJ DnaJ (Hsp40) homolog, subfamily C, member 15 protein-coding 13-PTNLD9-TUMOR_peak_51783 chr8 122586820 122586914 + 5.01205 NA Intergenic L3|LINE|CR1 -64719 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_52716 chr9 6944283 6944500 + 5.01205 NA intron (NM_001146696, intron 8 of 17) intron (NM_001146696, intron 8 of 17) 186750 NM_015061 23081 Hs.709425 NM_015061 HPRD:12016 KDM4C GASC1|JHDM3C|JMJD2C|TDRD14C|bA146B14.1 lysine (K)-specific demethylase 4C protein-coding 13-PTNLD9-TUMOR_peak_2620 chr1 99931238 99931332 + 5.01205 NA Intergenic MLT1C|LTR|ERVL-MaLR -180146 NM_017734 54873 Hs.483993 NM_017734 HPRD:06673 PALMD C1orf11|PALML palmdelphin protein-coding 13-PTNLD9-TUMOR_peak_9583 chr11 39258610 39258748 + 5.01205 NA Intergenic Intergenic 588271 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 13-PTNLD9-TUMOR_peak_5648 chr1 226624725 226624940 + 5.01205 NA Intergenic LTR88b|LTR|Gypsy? -29031 NM_001618 142 Hs.177766 NM_001618 HPRD:01435 PARP1 ADPRT|ADPRT 1|ADPRT1|ARTD1|PARP|PARP-1|PPOL|pADPRT-1 poly (ADP-ribose) polymerase 1 protein-coding 13-PTNLD9-TUMOR_peak_43385 chr6 422873 422972 + 5.01205 NA Intergenic Intergenic 31183 NM_002460 3662 Hs.401013 NM_002460 HPRD:03543 IRF4 LSIRF|MUM1|NF-EM5 interferon regulatory factor 4 protein-coding 13-PTNLD9-TUMOR_peak_18457 chr16 9431262 9431384 + 5.01205 NA Intergenic Intergenic 102549 NR_036166 100422920 NR_036166 miRBase:MI0014244 MIR548X - microRNA 548x ncRNA 13-PTNLD9-TUMOR_peak_46132 chr6 138247558 138247652 + 5.01205 NA Intergenic Intergenic -58235 NR_049793 100130476 Hs.598050 NR_049793 ENSG00000237499 LOC100130476 - uncharacterized LOC100130476 ncRNA 13-PTNLD9-TUMOR_peak_7998 chr10 92081314 92081408 + 5.01205 NA Intergenic Intergenic 219201 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LOC101926942 - uncharacterized LOC101926942 ncRNA 13-PTNLD9-TUMOR_peak_51775 chr8 122029707 122029805 + 5.01205 NA Intergenic Intergenic -205447 NM_021021 6641 Hs.46701 NM_021021 HPRD:02490 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1) protein-coding 13-PTNLD9-TUMOR_peak_1810 chr1 53760317 53760540 + 5.01205 NA intron (NM_001018054, intron 2 of 17) MIR3|SINE|MIR 33393 NM_004631 7804 Hs.280387 NM_004631 LRP8 APOER2|HSZ75190|LRP-8|MCI1 low density lipoprotein receptor-related protein 8, apolipoprotein e receptor protein-coding 13-PTNLD9-TUMOR_peak_9661 chr11 45539053 45539219 + 5.01205 NA Intergenic L2b|LINE|L2 146188 NR_122071 399886 Hs.559970 NR_122071 HPRD:13453 LOC399886 - uncharacterized LOC399886 ncRNA 13-PTNLD9-TUMOR_peak_51203 chr8 82023957 82024053 + 5.01205 NA 5' UTR (NM_018440, exon 1 of 9) 5' UTR (NM_018440, exon 1 of 9) 298 NM_018440 55824 Hs.266175 NM_018440 HPRD:05772 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 13-PTNLD9-TUMOR_peak_53164 chr9 36566903 36567029 + 5.01205 NA Intergenic Intergenic -5893 NM_001256689 9833 Hs.184339 NM_014791 HPRD:06119 MELK HPK38 maternal embryonic leucine zipper kinase protein-coding 13-PTNLD9-TUMOR_peak_21908 chr17 70712397 70712558 + 5.01205 NA intron (NM_139177, intron 7 of 9) intron (NM_139177, intron 7 of 9) -75866 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 - long intergenic non-protein coding RNA 511 ncRNA 13-PTNLD9-TUMOR_peak_33315 chr22 41024774 41024868 + 5.01205 NA intron (NM_001282661, intron 1 of 13) intron (NM_001282661, intron 1 of 13) 7902 NM_001282662 57591 Hs.654688 NM_020831 HPRD:10445 MKL1 BSAC|MAL|MRTF-A megakaryoblastic leukemia (translocation) 1 protein-coding 13-PTNLD9-TUMOR_peak_51459 chr8 102786219 102786318 + 5.01205 NA intron (NM_001040625, intron 4 of 6) intron (NM_001040625, intron 4 of 6) 17171 NM_032041 83988 Hs.492427 NM_032041 HPRD:09466 NCALD - neurocalcin delta protein-coding 13-PTNLD9-TUMOR_peak_44241 chr6 26336684 26336801 + 5.01205 NA Intergenic MER90|LTR|ERV1 -28645 NM_001197249 11118 Hs.376046 NM_007047 HPRD:12547 BTN3A2 BT3.2|BTF4|BTN3.2|CD277 butyrophilin, subfamily 3, member A2 protein-coding 13-PTNLD9-TUMOR_peak_29315 chr2 188255740 188255876 + 5.01205 NA intron (NM_005795, intron 1 of 14) intron (NM_005795, intron 1 of 14) 57213 NM_001271751 10203 Hs.470882 NM_005795 HPRD:11809 CALCRL CGRPR|CRLR calcitonin receptor-like protein-coding 13-PTNLD9-TUMOR_peak_20784 chr17 27697166 27697311 + 5.01205 NA Intergenic Intergenic -20442 NR_039749 100616122 NR_039749 miRBase:MI0016890 MIR4523 - microRNA 4523 ncRNA 13-PTNLD9-TUMOR_peak_5496 chr1 222999270 222999379 + 5.01205 NA intron (NM_032890, intron 1 of 9) AluJo|SINE|Alu 10893 NM_032890 84976 Hs.528817 NM_032890 HPRD:06326 DISP1 DISPA dispatched homolog 1 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_19521 chr16 65803773 65803933 + 5.01205 NA Intergenic MER61E|LTR|ERV1 -193650 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 13-PTNLD9-TUMOR_peak_25017 chr19 41360956 41361072 + 5.01205 NA Intergenic Intergenic -4662 NM_000762 1548 Hs.250615 NM_000762 HPRD:00420 CYP2A6 CPA6|CYP2A|CYP2A3|CYPIIA6|P450C2A|P450PB cytochrome P450, family 2, subfamily A, polypeptide 6 protein-coding 13-PTNLD9-TUMOR_peak_19480 chr16 58452600 58452737 + 5.01205 NA Intergenic Intergenic 26370 NM_022770 64785 Hs.47125 NM_022770 HPRD:07842 GINS3 PSF3 GINS complex subunit 3 (Psf3 homolog) protein-coding 13-PTNLD9-TUMOR_peak_5340 chr1 210637985 210638167 + 5.01205 NA intron (NM_018194, intron 8 of 11) intron (NM_018194, intron 8 of 11) 135436 NM_001170580 55733 Hs.58650 NM_018194 HPRD:12041 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 13-PTNLD9-TUMOR_peak_9402 chr11 30038511 30038622 + 5.01205 NA promoter-TSS (NM_002233) promoter-TSS (NM_002233) 11 NM_002233 3739 Hs.592002 NM_002233 HPRD:01444 KCNA4 HBK4|HK1|HPCN2|HUKII|KCNA4L|KCNA8|KV1.4|PCN2 potassium voltage-gated channel, shaker-related subfamily, member 4 protein-coding 13-PTNLD9-TUMOR_peak_32999 chr22 25858638 25858781 + 5.01205 NA Intergenic Intergenic 7096 NR_106875 102466198 NR_106875 MIR6817 hsa-mir-6817 microRNA 6817 ncRNA 13-PTNLD9-TUMOR_peak_14802 chr13 53144193 53144411 + 5.01205 NA intron (NR_002793, intron 17 of 23) L1PA16|LINE|L1 -47303 NM_001011724 144983 Hs.447506 NM_001011724 HPRD:17300 HNRNPA1L2 - heterogeneous nuclear ribonucleoprotein A1-like 2 protein-coding 13-PTNLD9-TUMOR_peak_33481 chr22 47487257 47487351 + 5.01205 NA intron (NR_104292, intron 12 of 13) intron (NR_104292, intron 12 of 13) -175366 NR_122047 642757 Hs.632786 NR_122047 TBC1D22A-AS1 - TBC1D22A antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_50068 chr8 10652400 10652515 + 5.01205 NA intron (NM_001284356, intron 5 of 5) intron (NM_001284356, intron 5 of 5) 30496 NR_031711 100302166 NR_031711 MIR1322 MIRN1322|hsa-mir-1322 microRNA 1322 ncRNA 13-PTNLD9-TUMOR_peak_46540 chr6 168100299 168100393 + 5.01205 NA Intergenic Intergenic -15879 NR_117092 441178 Hs.628956 NM_001025489 LOC441178 - uncharacterized LOC441178 ncRNA 13-PTNLD9-TUMOR_peak_14172 chr12 123528125 123528325 + 5.01205 NA intron (NM_001300801, intron 1 of 24) intron (NM_001300801, intron 1 of 24) -32950 NR_036187 100422931 NR_036187 MIR4304 - microRNA 4304 ncRNA 13-PTNLD9-TUMOR_peak_13546 chr12 97856513 97856615 + 5.01205 NA Intergenic Intergenic -2235 NR_024037 196475 Hs.652568 NR_024037 ENSG00000255794 RMST LINC00054|NCRMS|NCRNA00054 rhabdomyosarcoma 2 associated transcript (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_15928 chr14 60146756 60146851 + 5.01205 NA intron (NM_021136, intron 3 of 8) intron (NM_021136, intron 3 of 8) -49271 NM_206852 6252 Hs.368626 NM_021136 HPRD:02921 RTN1 NSP reticulon 1 protein-coding 13-PTNLD9-TUMOR_peak_30197 chr2 242003541 242003827 + 5.01205 NA intron (NM_001080437, intron 19 of 31) intron (NM_001080437, intron 19 of 31) 38063 NR_028049 130916 Hs.159556 NM_182501 HPRD:14699 MTERF4 MTERFD2 mitochondrial transcription termination factor 4 protein-coding 13-PTNLD9-TUMOR_peak_14266 chr12 126226976 126227257 + 5.01205 NA Intergenic Intergenic 120118 NM_001286219 114795 Hs.524838 NM_052907 TMEM132B - transmembrane protein 132B protein-coding 13-PTNLD9-TUMOR_peak_29802 chr2 218088115 218088209 + 5.01205 NA Intergenic MER45B|DNA|hAT-Tip100 -363380 NM_003284 7141 Hs.3017 NM_003284 HPRD:01830 TNP1 TP1 transition protein 1 (during histone to protamine replacement) protein-coding 13-PTNLD9-TUMOR_peak_27340 chr2 75874084 75874276 + 5.01205 NA intron (NM_014763, intron 1 of 5) CpG 271 NM_014763 9801 Hs.44024 NM_014763 MRPL19 L19mt|MRP-L15|MRP-L19|MRPL15|RLX1|RPML15 mitochondrial ribosomal protein L19 protein-coding 13-PTNLD9-TUMOR_peak_40649 chr5 38383079 38383173 + 5.01205 NA intron (NM_001205301, intron 6 of 22) intron (NM_001205301, intron 6 of 22) 20447 NR_102750 100506475 Hs.662304 NR_102749 ENSG00000248572 EGFLAM-AS2 - EGFLAM antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_41580 chr5 96303860 96303976 + 5.01205 NA intron (NM_175920, intron 1 of 17) intron (NM_175920, intron 1 of 17) 9762 NM_175920 4012 Hs.527199 NM_005575 HPRD:01041 LNPEP CAP|IRAP|P-LAP|PLAP leucyl/cystinyl aminopeptidase protein-coding 13-PTNLD9-TUMOR_peak_46322 chr6 151551364 151551485 + 5.01205 NA Intergenic Intergenic -9710 NM_005100 9590 Hs.371240 NM_005100 HPRD:05263 AKAP12 AKAP250|SSeCKS A kinase (PRKA) anchor protein 12 protein-coding 13-PTNLD9-TUMOR_peak_719 chr1 24894526 24894654 + 5.01205 NA intron (NM_001010980, intron 1 of 3) intron (NM_001010980, intron 1 of 3) 12023 NM_001010980 400746 Hs.200253 NM_001010980 HPRD:16963 NCMAP C1orf130|MP11 noncompact myelin associated protein protein-coding 13-PTNLD9-TUMOR_peak_50451 chr8 27930402 27930608 + 5.01205 NA intron (NM_001010906, intron 2 of 18) MamGypLTR3|LTR|Gypsy 10883 NM_001010906 389643 Hs.370129 NM_001010906 ENSG00000189233 NUGGC C8orf80|SLIP-GC nuclear GTPase, germinal center associated protein-coding 13-PTNLD9-TUMOR_peak_12557 chr12 38884885 38884993 + 5.01205 NA Intergenic Intergenic 174382 NM_001013620 144245 Hs.259305 NM_001013620 ALG10B ALG10|KCR1 ALG10B, alpha-1,2-glucosyltransferase protein-coding 13-PTNLD9-TUMOR_peak_26727 chr2 43454793 43454976 + 5.01205 NA non-coding (NR_027251, exon 1 of 1) non-coding (NR_027251, exon 1 of 1) 534 NR_027251 100129726 Hs.194480 NM_178529 LINC01126 - long intergenic non-protein coding RNA 1126 ncRNA 13-PTNLD9-TUMOR_peak_40917 chr5 55786884 55786985 + 5.01205 NA Intergenic Intergenic -9338 NR_104664 102467147 Hs.650177 NR_104664 LOC102467147 - uncharacterized LOC102467147 ncRNA 13-PTNLD9-TUMOR_peak_48884 chr7 119693160 119693353 + 5.01205 NA Intergenic LTR4|LTR|ERV1 -220466 NM_012281 3751 Hs.654739 NM_012281 HPRD:09254 KCND2 KV4.2|RK5 potassium voltage-gated channel, Shal-related subfamily, member 2 protein-coding 13-PTNLD9-TUMOR_peak_46551 chr6 168435991 168436095 + 5.01205 NA intron (NM_030615, intron 4 of 8) CpG 17490 NM_005355 3834 Hs.150013 NM_005355 HPRD:04818 KIF25 KNSL3 kinesin family member 25 protein-coding 13-PTNLD9-TUMOR_peak_8337 chr10 112370409 112370503 + 5.01205 NA Intergenic Intergenic -33699 NM_001134363 282996 Hs.116630 NM_001134363 ENSG00000203867 RBM20 - RNA binding motif protein 20 protein-coding 13-PTNLD9-TUMOR_peak_20492 chr17 11608598 11608721 + 5.01205 NA intron (NM_001372, intron 26 of 68) intron (NM_001372, intron 26 of 68) 106911 NM_001372 1770 Hs.567259 NM_001372 HPRD:04511 DNAH9 DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20 dynein, axonemal, heavy chain 9 protein-coding 13-PTNLD9-TUMOR_peak_14399 chr13 21539133 21539366 + 5.01205 NA Intergenic Intergenic -15682 NR_104058 101930748 Hs.637638 NR_104058 LINC00367 - long intergenic non-protein coding RNA 367 ncRNA 13-PTNLD9-TUMOR_peak_30198 chr2 242041697 242041889 + 5.01205 NA promoter-TSS (NR_028049) promoter-TSS (NR_028049) -46 NM_182501 130916 Hs.159556 NM_182501 HPRD:14699 MTERF4 MTERFD2 mitochondrial transcription termination factor 4 protein-coding 13-PTNLD9-TUMOR_peak_8267 chr10 105532170 105532293 + 5.01205 NA intron (NM_014631, intron 2 of 13) intron (NM_014631, intron 2 of 13) 25694 NR_038940 100505839 Hs.655149 NR_038940 SH3PXD2A-AS1 - SH3PXD2A antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_21653 chr17 57518290 57518384 + 5.01205 NA intron (NR_110813, intron 2 of 2) intron (NR_110813, intron 2 of 2) 74893 NR_039882 100616204 NR_039882 MIR4729 - microRNA 4729 ncRNA 13-PTNLD9-TUMOR_peak_34379 chr3 44167577 44167674 + 5.01205 NA Intergenic ERV3-16A3_LTR|LTR|ERVL 11921 NR_029700 406929 NR_029700 miRBase:MI0000476 MIR138-1 MIRN138-1 microRNA 138-1 ncRNA 13-PTNLD9-TUMOR_peak_26476 chr2 30057632 30057754 + 5.01205 NA intron (NM_004304, intron 1 of 28) intron (NM_004304, intron 1 of 28) 86784 NM_004304 238 Hs.654469 NM_004304 HPRD:00104 ALK CD246|NBLST3 anaplastic lymphoma receptor tyrosine kinase protein-coding 13-PTNLD9-TUMOR_peak_17054 chr15 39464315 39464489 + 5.01205 NA Intergenic Intergenic -78483 NM_207445 400360 Hs.376109 NM_207445 HPRD:13437 C15orf54 - chromosome 15 open reading frame 54 protein-coding 13-PTNLD9-TUMOR_peak_8370 chr10 115473500 115473606 + 5.01205 NA intron (NM_001267058, intron 1 of 5) intron (NM_001267058, intron 1 of 5) 4449 NM_001267058 840 Hs.9216 NM_001227 HPRD:03457 CASP7 CASP-7|CMH-1|ICE-LAP3|LICE2|MCH3 caspase 7, apoptosis-related cysteine peptidase protein-coding 13-PTNLD9-TUMOR_peak_15983 chr14 62431851 62432011 + 5.01205 NA Intergenic Intergenic -30610 NM_031914 83851 Hs.404139 NM_031914 HPRD:15461 SYT16 CHR14SYT|SYT14L|Strep14|syt14r|yt14r synaptotagmin XVI protein-coding 13-PTNLD9-TUMOR_peak_31490 chr20 50004858 50004952 + 5.01205 NA 3' UTR (NM_001136021, exon 11 of 11) 3' UTR (NM_001136021, exon 11 of 11) 64609 NR_036162 100422889 NR_036162 MIR3194 - microRNA 3194 ncRNA 13-PTNLD9-TUMOR_peak_55870 chrX 52004986 52005135 + 5.01205 NA Intergenic CpG 71342 NR_003711 100124541 Hs.709779 NR_003711 SNORA11D - small nucleolar RNA, H/ACA box 11D snoRNA 13-PTNLD9-TUMOR_peak_46264 chr6 149656080 149656248 + 5.01205 NA intron (NM_015093, intron 1 of 8) intron (NM_015093, intron 1 of 8) 16728 NM_015093 23118 Hs.269775 NM_015093 HPRD:05483 TAB2 CHTD2|MAP3K7IP2|TAB-2 TGF-beta activated kinase 1/MAP3K7 binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_11157 chr11 109810056 109810150 + 5.01205 NA Intergenic Intergenic -153984 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 13-PTNLD9-TUMOR_peak_8619 chr10 130959562 130959726 + 5.01205 NA Intergenic Intergenic -305810 NM_002412 4255 Hs.501522 NM_002412 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 13-PTNLD9-TUMOR_peak_17409 chr15 63050323 63050498 + 5.01205 NA intron (NM_015059, intron 34 of 55) intron (NM_015059, intron 34 of 55) -65746 NR_029709 406965 NR_029709 MIR190A MIR190|MIRN190|hsa-mir-190a|miR-190 microRNA 190a ncRNA 13-PTNLD9-TUMOR_peak_39852 chr4 170284600 170284709 + 5.01205 NA Intergenic MLT1D-int|LTR|ERVL-MaLR -92405 NM_020870 57630 Hs.301804 NM_020870 HPRD:15335 SH3RF1 POSH|RNF142|SH3MD2 SH3 domain containing ring finger 1 protein-coding 13-PTNLD9-TUMOR_peak_29995 chr2 231822162 231822278 + 5.01205 NA Intergenic Intergenic -32279 NM_005683 9290 Hs.114545 NM_005683 HPRD:07248 GPR55 LPIR1 G protein-coupled receptor 55 protein-coding 13-PTNLD9-TUMOR_peak_14894 chr13 78082087 78082186 + 5.01205 NA Intergenic Intergenic -27673 NM_144777 8796 Hs.534699 NM_003843 HPRD:09161 SCEL - sciellin protein-coding 13-PTNLD9-TUMOR_peak_32476 chr21 44631396 44631677 + 5.01205 NA Intergenic Intergenic 42418 NM_000394 1409 Hs.184085 NM_000394 HPRD:00427 CRYAA CRYA1|CTRCT9|HSPB4 crystallin, alpha A protein-coding 13-PTNLD9-TUMOR_peak_15709 chr14 50480285 50480510 + 5.01205 NA intron (NR_102736, intron 3 of 5) intron (NR_102736, intron 3 of 5) -6159 NM_001012706 283551 Hs.660867 NM_001012706 HPRD:13397 C14orf182 - chromosome 14 open reading frame 182 protein-coding 13-PTNLD9-TUMOR_peak_24649 chr19 31623397 31623496 + 5.01205 NA Intergenic Intergenic 216744 NM_020856 57616 Hs.278436 NM_020856 HPRD:18351 TSHZ3 TSH3|ZNF537 teashirt zinc finger homeobox 3 protein-coding 13-PTNLD9-TUMOR_peak_26872 chr2 47716155 47716275 + 5.01205 NA Intergenic Intergenic -38461 NR_120602 644093 Hs.734158 NR_120602 HCG2040054 - uncharacterized LOC644093 ncRNA 13-PTNLD9-TUMOR_peak_50823 chr8 46849754 46849889 + 5.01036 NA Intergenic ALR/Alpha|Satellite|centr -902687 NR_027012 497634 Hs.406982 NR_027012 ENSG00000253314 LINC00293 BEYLA|NCRNA00293 long intergenic non-protein coding RNA 293 ncRNA 13-PTNLD9-TUMOR_peak_54317 chr9 108457385 108457570 + 5.01031 NA intron (NM_018112, intron 1 of 5) CpG 671 NM_018112 55151 Hs.411925 NM_018112 HPRD:15538 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 13-PTNLD9-TUMOR_peak_21535 chr17 53511276 53511385 + 5.01031 NA Intergenic Intergenic -11989 NM_012329 23531 Hs.463483 NM_012329 HPRD:06835 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation-associated protein-coding 13-PTNLD9-TUMOR_peak_32530 chr21 45628010 45628134 + 5.01031 NA Intergenic Intergenic 32815 NM_001283050 23308 Hs.14155 NM_015259 HPRD:05757 ICOSLG B7-H2|B7H2|B7RP-1|B7RP1|CD275|GL50|ICOS-L|ICOSL|LICOS inducible T-cell co-stimulator ligand protein-coding 13-PTNLD9-TUMOR_peak_21430 chr17 48122706 48122828 + 5.01031 NA Intergenic MIRb|SINE|MIR 10336 NR_038230 284080 Hs.274864 NR_038230 ENSG00000246640 LOC284080 - uncharacterized LOC284080 ncRNA 13-PTNLD9-TUMOR_peak_42284 chr5 139076822 139077237 + 5.01031 NA Intergenic CpG 48728 NM_016463 51523 Hs.744933 NM_016463 HPRD:13105 CXXC5 CF5|RINF|WID CXXC finger protein 5 protein-coding 13-PTNLD9-TUMOR_peak_2562 chr1 95089290 95089447 + 5.00950 NA Intergenic Intergenic -81955 NM_001993 2152 Hs.62192 NM_001993 HPRD:00603 F3 CD142|TF|TFA coagulation factor III (thromboplastin, tissue factor) protein-coding 13-PTNLD9-TUMOR_peak_54195 chr9 101218374 101218468 + 5.00829 NA intron (NM_005458, intron 6 of 18) intron (NM_005458, intron 6 of 18) -200418 NM_001267571 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family, member 2 protein-coding 13-PTNLD9-TUMOR_peak_39946 chr4 183995946 183996118 + 5.00829 NA Intergenic Intergenic 24320 NR_024008 152641 Hs.745108 NM_153008 HPRD:08082 WWC2-AS2 C4orf38 WWC2 antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_51062 chr8 66977318 66977512 + 5.00829 NA intron (NM_033105, intron 3 of 5) intron (NM_033105, intron 3 of 5) 43624 NM_033105 85479 Hs.491885 NM_033105 HPRD:07474 DNAJC5B CSP-beta DnaJ (Hsp40) homolog, subfamily C, member 5 beta protein-coding 13-PTNLD9-TUMOR_peak_36826 chr3 177488515 177488685 + 5.00829 NA Intergenic Intergenic -46053 NR_110826 102724550 Hs.570526 NR_110826 LOC102724550 - uncharacterized LOC102724550 ncRNA 13-PTNLD9-TUMOR_peak_38453 chr4 57082172 57082291 + 5.00829 NA intron (NM_020722, intron 2 of 10) MIR3|SINE|MIR 45870 NM_020722 57482 Hs.596667 NM_020722 KIAA1211 - KIAA1211 protein-coding 13-PTNLD9-TUMOR_peak_42986 chr5 170964583 170964755 + 5.00829 NA Intergenic Intergenic 118002 NM_003862 8817 Hs.87191 NM_003862 HPRD:04766 FGF18 FGF-18|ZFGF5 fibroblast growth factor 18 protein-coding 13-PTNLD9-TUMOR_peak_4971 chr1 201577917 201578012 + 5.00829 NA Intergenic Intergenic -39486 NM_020443 89796 Hs.585374 NM_020443 HPRD:10113 NAV1 POMFIL3|STEERIN1|UNC53H1 neuron navigator 1 protein-coding 13-PTNLD9-TUMOR_peak_32093 chr21 31029181 31029284 + 5.00829 NA intron (NM_175611, intron 4 of 15) X6B_LINE|LINE|CR1 60872 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_8483 chr10 123084237 123084597 + 5.00829 NA Intergenic L1MC3|LINE|L1 269064 NM_001144913 2263 Hs.533683 NM_000141 HPRD:01492 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 13-PTNLD9-TUMOR_peak_51864 chr8 125452703 125452797 + 5.00829 NA Intergenic Intergenic -10298 NM_017956 55039 Hs.9925 NM_017956 HPRD:07947 TRMT12 TRM12|TYW2 tRNA methyltransferase 12 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_54566 chr9 118013137 118013231 + 5.00829 NA intron (NM_017418, intron 2 of 7) intron (NM_017418, intron 2 of 7) 109087 NM_017418 50514 Hs.148841 NM_017418 HPRD:16068 DEC1 CTS9 deleted in esophageal cancer 1 protein-coding 13-PTNLD9-TUMOR_peak_37997 chr4 11314023 11314323 + 5.00829 NA Intergenic MLT1H1|LTR|ERVL-MaLR -56278 NR_030298 693157 NR_030298 miRBase:MI0003579 MIR572 MIRN572|hsa-mir-572 microRNA 572 ncRNA 13-PTNLD9-TUMOR_peak_11429 chr11 120381909 120382011 + 5.00829 NA promoter-TSS (NM_014619) promoter-TSS (NM_014619) -505 NM_014619 2900 Hs.538738 NM_014619 HPRD:02613 GRIK4 EAA1|GRIK|GluK4|KA1 glutamate receptor, ionotropic, kainate 4 protein-coding 13-PTNLD9-TUMOR_peak_50956 chr8 55162151 55162297 + 5.00829 NA Intergenic LTR16A|LTR|ERVL 114443 NM_014175 29088 Hs.18349 NM_014175 MRPL15 L15mt|MRP-L15|MRP-L7|RPML7 mitochondrial ribosomal protein L15 protein-coding 13-PTNLD9-TUMOR_peak_3080 chr1 120270737 120270831 + 5.00829 NA intron (NM_006623, intron 5 of 11) LTR43|LTR|ERV1 16365 NM_006623 26227 Hs.487296 NM_006623 HPRD:06047 PHGDH 3-PGDH|3PGDH|HEL-S-113|NLS|PDG|PGAD|PGD|PGDH|PHGDHD|SERA phosphoglycerate dehydrogenase protein-coding 13-PTNLD9-TUMOR_peak_49920 chr8 257183 257341 + 5.00829 NA Intergenic Intergenic 74712 NM_001287254 169270 Hs.591388 NM_173539 HPRD:11731 ZNF596 - zinc finger protein 596 protein-coding 13-PTNLD9-TUMOR_peak_14505 chr13 30141720 30141849 + 5.00829 NA intron (NM_003045, intron 1 of 12) intron (NM_003045, intron 1 of 12) 28041 NM_003045 6541 Hs.14846 NM_003045 HPRD:00091 SLC7A1 ATRC1|CAT-1|ERR|HCAT1|REC1L solute carrier family 7 (cationic amino acid transporter, y+ system), member 1 protein-coding 13-PTNLD9-TUMOR_peak_31526 chr20 51475796 51475890 + 5.00829 NA Intergenic Intergenic -113103 NM_173485 128553 Hs.473117 NM_173485 HPRD:10730 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 13-PTNLD9-TUMOR_peak_53714 chr9 80499468 80499572 + 5.00829 NA intron (NM_002072, intron 2 of 6) intron (NM_002072, intron 2 of 6) 146845 NM_002072 2776 Hs.269782 NM_002072 GNAQ CMC1|G-ALPHA-q|GAQ|SWS guanine nucleotide binding protein (G protein), q polypeptide protein-coding 13-PTNLD9-TUMOR_peak_25354 chr19 49622050 49622191 + 5.00265 NA promoter-TSS (NR_103842) promoter-TSS (NR_103842) 277 NM_018111 55150 Hs.458310 NM_018111 HPRD:07676 C19orf73 - chromosome 19 open reading frame 73 protein-coding 13-PTNLD9-TUMOR_peak_34872 chr3 66139625 66139741 + 5.00240 NA intron (NM_173471, intron 1 of 10) intron (NM_173471, intron 1 of 10) 20398 NM_173471 115286 Hs.379386 NM_173471 HPRD:15357 SLC25A26 SAMC solute carrier family 25 (S-adenosylmethionine carrier), member 26 protein-coding 13-PTNLD9-TUMOR_peak_53848 chr9 88420559 88420855 + 5.00240 NA promoter-TSS (NR_029410) promoter-TSS (NR_029410) -210 NR_029410 389765 Hs.715986 NR_029410 LOC389765 - kinesin family member 27 pseudogene pseudo 13-PTNLD9-TUMOR_peak_36832 chr3 177548324 177548514 + 5.00240 NA intron (NR_110826, intron 1 of 2) L3|LINE|CR1 13766 NR_110826 102724550 Hs.570526 NR_110826 LOC102724550 - uncharacterized LOC102724550 ncRNA 13-PTNLD9-TUMOR_peak_47207 chr7 33038156 33038374 + 5.00240 NA intron (NM_007270, intron 7 of 9) intron (NM_007270, intron 7 of 9) 19179 NM_001284343 11328 Hs.103934 NM_007270 HPRD:06510 FKBP9 FKBP60|FKBP63|PPIase FK506 binding protein 9, 63 kDa protein-coding 13-PTNLD9-TUMOR_peak_30522 chr20 18205637 18205734 + 5.00240 NA Intergenic Intergenic -63242 NM_001282996 7692 Hs.472221 NM_003434 HPRD:04964 ZNF133 ZNF150|pHZ-13|pHZ-66 zinc finger protein 133 protein-coding 13-PTNLD9-TUMOR_peak_44152 chr6 24908895 24909090 + 5.00240 NA intron (NM_001286446, intron 1 of 13) intron (NM_001286446, intron 1 of 13) 2406 NM_014722 9750 Hs.559459 NM_014722 HPRD:12881 FAM65B C6orf32|DIFF40|DIFF48|MYONAP|PL48 family with sequence similarity 65, member B protein-coding 13-PTNLD9-TUMOR_peak_12292 chr12 22199678 22199903 + 5.00240 NA intron (NM_018686, intron 1 of 7) intron (NM_018686, intron 1 of 7) 680 NM_018686 55907 Hs.311346 NM_018686 HPRD:04501 CMAS CSS cytidine monophosphate N-acetylneuraminic acid synthetase protein-coding 13-PTNLD9-TUMOR_peak_1066 chr1 35229060 35229388 + 5.00240 NA 3' UTR (NM_153212, exon 2 of 2) 3' UTR (NM_153212, exon 2 of 2) 3882 NM_153212 127534 Hs.351203 NM_153212 HPRD:05666 GJB4 CX30.3|EKV gap junction protein, beta 4, 30.3kDa protein-coding 13-PTNLD9-TUMOR_peak_8168 chr10 102242235 102242329 + 5.00240 NA exon (NM_003393, exon 6 of 6) exon (NM_003393, exon 6 of 6) 19470 NM_003393 7479 Hs.421281 NM_003393 HPRD:03235 WNT8B - wingless-type MMTV integration site family, member 8B protein-coding 13-PTNLD9-TUMOR_peak_29099 chr2 173600729 173600823 + 4.99889 NA exon (NM_007023, exon 1 of 31) exon (NM_007023, exon 1 of 31) 158 NR_026995 91149 Hs.711021 NR_026995 ENSG00000228016 RAPGEF4-AS1 - RAPGEF4 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_17627 chr15 74233521 74233690 + 4.99889 NA intron (NM_005576, intron 1 of 6) intron (NM_005576, intron 1 of 6) -13016 NR_040068 100287616 Hs.599785 NR_040066 ENSG00000261801 LOXL1-AS1 - LOXL1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_16180 chr14 70485739 70485867 + 4.99889 NA intron (NM_001034852, intron 10 of 11) intron (NM_001034852, intron 10 of 11) 61131 NM_182936 6547 Hs.337696 NM_033262 HPRD:09723 SLC8A3 NCX3 solute carrier family 8 (sodium/calcium exchanger), member 3 protein-coding 13-PTNLD9-TUMOR_peak_24437 chr19 19086001 19086218 + 4.99889 NA Intergenic Intergenic -34068 NM_004838 9454 Hs.720208 NM_004838 HPRD:07270 HOMER3 HOMER-3|VESL3 homer homolog 3 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_50630 chr8 37894632 37894726 + 4.99889 NA intron (NM_004095, intron 1 of 2) L2c|LINE|L2 6659 NM_004095 1978 Hs.411641 NM_004095 HPRD:03746 EIF4EBP1 4E-BP1|4EBP1|BP-1|PHAS-I eukaryotic translation initiation factor 4E binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_26387 chr2 27440668 27440955 + 4.99889 NA TTS (NM_001170795) TTS (NM_001170795) 553 NM_004341 790 Hs.377010 NM_004341 HPRD:06437 CAD - carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase protein-coding 13-PTNLD9-TUMOR_peak_29748 chr2 213587974 213588068 + 4.99889 NA Intergenic Intergenic -184669 NM_005235 2066 Hs.390729 NM_005235 HPRD:02767 ERBB4 ALS19|HER4|p180erbB4 v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 4 protein-coding 13-PTNLD9-TUMOR_peak_36772 chr3 174048230 174048396 + 4.99889 NA Intergenic LTR16B2|LTR|ERVL -409727 NR_046664 100874010 Hs.624265 NR_046664 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_12712 chr12 49482105 49482267 + 4.99889 NA Intergenic Intergenic 6416 NM_021044 50846 Hs.524382 NM_021044 HPRD:05664 DHH GDXYM|HHG-3|SRXY7 desert hedgehog protein-coding 13-PTNLD9-TUMOR_peak_19773 chr16 75321741 75321845 + 4.99889 NA Intergenic Intergenic -19842 NM_001170715 9564 Hs.479747 NM_014567 HPRD:04248 BCAR1 CAS|CAS1|CASS1|CRKAS|P130Cas breast cancer anti-estrogen resistance 1 protein-coding 13-PTNLD9-TUMOR_peak_8437 chr10 120261243 120261337 + 4.99889 NA Intergenic Intergenic 93870 NM_004248 2834 Hs.248119 NM_004248 HPRD:02937 PRLHR GPR10|GR3|PrRPR prolactin releasing hormone receptor protein-coding 13-PTNLD9-TUMOR_peak_33043 chr22 28425255 28425533 + 4.99889 NA intron (NM_001145418, intron 13 of 22) intron (NM_001145418, intron 13 of 22) -108794 NR_036169 100423034 NR_036169 miRBase:MI0014247 MIR3199-1 - microRNA 3199-1 ncRNA 13-PTNLD9-TUMOR_peak_40153 chr5 672447 672651 + 4.99755 NA intron (NM_007030, intron 2 of 3) intron (NM_007030, intron 2 of 3) 20961 NM_007030 11076 Hs.481466 NM_007030 HPRD:18522 TPPP TPPP/p25|TPPP1|p24|p25|p25alpha tubulin polymerization promoting protein protein-coding 13-PTNLD9-TUMOR_peak_48942 chr7 127391825 127391932 + 4.99674 NA intron (NM_014390, intron 10 of 23) intron (NM_014390, intron 10 of 23) 99676 NM_014390 27044 Hs.122523 NM_014390 HPRD:03714 SND1 TDRD11|p100 staphylococcal nuclease and tudor domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_502 chr1 16007659 16007848 + 4.99674 NA Intergenic Intergenic -3074 NM_015164 23207 Hs.646775 NM_015164 ENSG00000116786 PLEKHM2 SKIP pleckstrin homology domain containing, family M (with RUN domain) member 2 protein-coding 13-PTNLD9-TUMOR_peak_11995 chr12 6727015 6727109 + 4.99674 NA TTS (NM_001142961) TTS (NM_001142961) -10463 NM_001273 1108 Hs.162233 NM_001273 HPRD:04472 CHD4 CHD-4|Mi-2b|Mi2-BETA chromodomain helicase DNA binding protein 4 protein-coding 13-PTNLD9-TUMOR_peak_20895 chr17 34581512 34581620 + 4.99268 NA exon (NM_032258, exon 14 of 14).3 exon (NM_032258, exon 14 of 14).3 10416 NM_001291462 101060321 Hs.454716 NM_001291462 LOC101060321 - TBC1 domain family member-like protein-coding 13-PTNLD9-TUMOR_peak_46838 chr7 6618282 6618382 + 4.98627 NA 5' UTR (NM_001134389, exon 2 of 8) 5' UTR (NM_001134389, exon 2 of 8) 1267 NM_001134389 55146 Hs.5268 NM_018106 HPRD:15719 ZDHHC4 ZNF374 zinc finger, DHHC-type containing 4 protein-coding 13-PTNLD9-TUMOR_peak_50008 chr8 7448583 7448688 + 4.98627 NA Intergenic HERVE-int|LTR|ERV1 -16715 NR_046343 441317 Hs.715411 NM_001136572 FAM90A7P FAM90A7 putative protein FAM90A7 pseudo 13-PTNLD9-TUMOR_peak_2747 chr1 109743972 109744164 + 4.98627 NA intron (NM_001284353, intron 14 of 14) intron (NM_001284353, intron 14 of 14) -12447 NR_034072 6301 Hs.531176 NM_006513 HPRD:09605 SARS SERRS|SERS seryl-tRNA synthetase protein-coding 13-PTNLD9-TUMOR_peak_14868 chr13 76122237 76122405 + 4.98627 NA intron (NM_001287394, intron 1 of 2) ERVL-E-int|LTR|ERVL 1254 NM_001287394 170622 Hs.508266 NM_203495 HPRD:13084 COMMD6 Acrg COMM domain containing 6 protein-coding 13-PTNLD9-TUMOR_peak_50472 chr8 28351560 28351654 + 4.98627 NA promoter-TSS (NM_017412) promoter-TSS (NM_017412) -115 NM_017412 7976 Hs.40735 NM_017412 HPRD:05849 FZD3 Fz-3 frizzled class receptor 3 protein-coding 13-PTNLD9-TUMOR_peak_29133 chr2 174856957 174857058 + 4.98627 NA Intergenic Intergenic -26577 NM_003111 6670 Hs.531587 NM_003111 HPRD:03483 SP3 SPR2 Sp3 transcription factor protein-coding 13-PTNLD9-TUMOR_peak_36174 chr3 140473482 140473654 + 4.98627 NA Intergenic Intergenic 76702 NM_152616 287015 Hs.343487 NM_152616 HPRD:15559 TRIM42 PPP1R40 tripartite motif containing 42 protein-coding 13-PTNLD9-TUMOR_peak_35095 chr3 89402738 89402885 + 4.98627 NA intron (NM_182644, intron 5 of 6) intron (NM_182644, intron 5 of 6) 246137 NM_182644 2042 Hs.123642 NM_005233 HPRD:01555 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 13-PTNLD9-TUMOR_peak_30730 chr20 30183741 30183897 + 4.98460 NA Intergenic L2a|LINE|L2 -9267 NM_181353 3397 Hs.504609 NM_002165 HPRD:08980 ID1 ID|bHLHb24 inhibitor of DNA binding 1, dominant negative helix-loop-helix protein protein-coding 13-PTNLD9-TUMOR_peak_9419 chr11 32112981 32113341 + 4.98228 NA intron (NM_002901, intron 1 of 5) CpG 684 NM_002901 5954 Hs.97887 NM_002901 HPRD:04111 RCN1 HEL-S-84|PIG20|RCAL|RCN reticulocalbin 1, EF-hand calcium binding domain protein-coding 13-PTNLD9-TUMOR_peak_15600 chr14 39639561 39639710 + 4.97998 NA promoter-TSS (NM_001079537) promoter-TSS (NM_001079537) -1 NM_001079537 122553 Hs.13303 NM_177452 HPRD:18221 TRAPPC6B TPC6 trafficking protein particle complex 6B protein-coding 13-PTNLD9-TUMOR_peak_18929 chr16 29416751 29416884 + 4.97991 NA Intergenic MIRb|SINE|MIR -43849 NR_002454 606724 Hs.744975 NR_002454 LOC606724 - coronin, actin binding protein, 1A pseudogene pseudo 13-PTNLD9-TUMOR_peak_36323 chr3 149016009 149016199 + 4.97489 NA Intergenic AluSz6|SINE|Alu 35155 NM_001184723 116441 Hs.22026 NM_138786 HPRD:14018 TM4SF18 L6D transmembrane 4 L six family member 18 protein-coding 13-PTNLD9-TUMOR_peak_29026 chr2 169948737 169948865 + 4.97489 NA intron (NM_001289763, intron 4 of 4) intron (NM_001289763, intron 4 of 4) 11184 NM_001142271 10170 Hs.179608 NM_005771 HPRD:09916 DHRS9 3-alpha-HSD|3ALPHA-HSD|RDH-E2|RDH-TBE|RDH15|RDHL|RDHTBE|RETSDR8|SDR9C4 dehydrogenase/reductase (SDR family) member 9 protein-coding 13-PTNLD9-TUMOR_peak_4087 chr1 160163009 160163232 + 4.97489 NA intron (NM_001231, intron 2 of 10) intron (NM_001231, intron 2 of 10) 2835 NM_001231 844 Hs.632476 NM_001231 HPRD:15915 CASQ1 CASQ|PDIB1 calsequestrin 1 (fast-twitch, skeletal muscle) protein-coding 13-PTNLD9-TUMOR_peak_44127 chr6 24495240 24495679 + 4.97489 NA exon (NM_001080, exon 1 of 10) exon (NM_001080, exon 1 of 10) 262 NM_170740 7915 Hs.371723 NM_001080 HPRD:08361 ALDH5A1 SSADH|SSDH aldehyde dehydrogenase 5 family, member A1 protein-coding 13-PTNLD9-TUMOR_peak_28620 chr2 139722104 139722202 + 4.97489 NA Intergenic Intergenic 67259 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_44482 chr6 30780982 30781084 + 4.97489 NA Intergenic Intergenic -68706 NM_003897 8870 Hs.76095 NM_003897 HPRD:04295 IER3 DIF-2|DIF2|GLY96|IEX-1|IEX-1L|IEX1|PRG1 immediate early response 3 protein-coding 13-PTNLD9-TUMOR_peak_37072 chr3 186557702 186557981 + 4.97489 NA Intergenic Intergenic -2622 NM_001177800 9370 Hs.80485 NM_004797 HPRD:05671 ADIPOQ ACDC|ACRP30|ADIPQTL1|ADPN|APM-1|APM1|GBP28 adiponectin, C1Q and collagen domain containing protein-coding 13-PTNLD9-TUMOR_peak_39548 chr4 146467822 146467957 + 4.97489 NA exon (NM_005900, exon 5 of 7) exon (NM_005900, exon 5 of 7) -43757 NR_108077 101927659 Hs.519005 NR_108077 SMAD1-AS2 - SMAD1 antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_50734 chr8 42060758 42060882 + 4.97489 NA intron (NM_000930, intron 1 of 13) intron (NM_000930, intron 1 of 13) 4374 NM_033011 5327 Hs.491582 NM_000930 HPRD:01419 PLAT T-PA|TPA plasminogen activator, tissue protein-coding 13-PTNLD9-TUMOR_peak_48989 chr7 128407909 128408003 + 4.97429 NA intron (NR_074086, intron 4 of 4) intron (NR_074086, intron 4 of 4) 7888 NM_001708 611 Hs.656404 NM_001708 HPRD:01836 OPN1SW BCP|BOP|CBT opsin 1 (cone pigments), short-wave-sensitive protein-coding 13-PTNLD9-TUMOR_peak_55055 chr9 139891240 139891334 + 4.97429 NA promoter-TSS (NM_004669) promoter-TSS (NM_004669) -263 NM_004669 9022 Hs.64746 NM_004669 CLIC3 - chloride intracellular channel 3 protein-coding 13-PTNLD9-TUMOR_peak_36387 chr3 150321538 150321677 + 4.97429 NA intron (NM_016275, intron 1 of 5) CpG 541 NM_016275 51714 Hs.369052 NM_016275 HPRD:07446 SELT - selenoprotein T protein-coding 13-PTNLD9-TUMOR_peak_33140 chr22 32146070 32146251 + 4.97429 NA promoter-TSS (NM_173566) promoter-TSS (NM_173566) -40 NM_173566 253143 Hs.438906 NM_173566 HPRD:14665 PRR14L C22orf30 proline rich 14-like protein-coding 13-PTNLD9-TUMOR_peak_43657 chr6 6876161 6876268 + 4.97236 NA Intergenic Intergenic -231616 NM_001168344 6239 Hs.298248 NM_002955 HPRD:03733 RREB1 FINB|HNT|LZ321|RREB-1|Zep-1 ras responsive element binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_23088 chr18 45408310 45408404 + 4.97236 NA intron (NM_005901, intron 2 of 10) AluJr|SINE|Alu 48613 NM_005901 4087 Hs.12253 NM_005901 HPRD:03221 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding 13-PTNLD9-TUMOR_peak_46290 chr6 150578161 150578255 + 4.97236 NA Intergenic Intergenic -111820 NM_203395 389434 Hs.310225 NM_203395 HPRD:16668 IYD C6orf71|DEHAL1|TDH4|dJ422F24.1 iodotyrosine deiodinase protein-coding 13-PTNLD9-TUMOR_peak_53991 chr9 94600673 94600769 + 4.97236 NA intron (NM_004560, intron 1 of 8) intron (NM_004560, intron 1 of 8) 111723 NM_004560 4920 Hs.98255 NM_004560 HPRD:03822 ROR2 BDB|BDB1|NTRKR2 receptor tyrosine kinase-like orphan receptor 2 protein-coding 13-PTNLD9-TUMOR_peak_32880 chr22 22549858 22549952 + 4.97236 NA Intergenic Intergenic -49295 NM_007128 7441 Hs.247979 NM_007128 HPRD:05505 VPREB1 IGI|IGVPB|VPREB pre-B lymphocyte 1 protein-coding 13-PTNLD9-TUMOR_peak_12467 chr12 32424421 32424620 + 4.97236 NA intron (NM_001003398, intron 2 of 8) LTR24B|LTR|ERV1 164335 NM_001714 636 Hs.505202 NM_001714 HPRD:03730 BICD1 BICD bicaudal D homolog 1 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_56527 chrX 134155811 134155910 + 4.97236 NA 3' UTR (NM_001078173, exon 1 of 1) 3' UTR (NM_001078173, exon 1 of 1) 706 NM_001078173 441518 Hs.378813 NM_001078173 ENSG00000212747 FAM127C CXX1c|MAR8B family with sequence similarity 127, member C protein-coding 13-PTNLD9-TUMOR_peak_39342 chr4 129744321 129744425 + 4.97236 NA intron (NM_001287443, intron 1 of 10) intron (NM_001287443, intron 1 of 10) 11374 NM_001287443 79960 Hs.12420 NM_024900 HPRD:10151 JADE1 PHF17 jade family PHD finger 1 protein-coding 13-PTNLD9-TUMOR_peak_54222 chr9 102247910 102248004 + 4.97236 NA Intergenic L2c|LINE|L2 -110418 NR_102270 100996569 Hs.745280 NR_102270 ENSG00000271086 NAMA - non-protein coding RNA, associated with MAP kinase pathway and growth arrest ncRNA 13-PTNLD9-TUMOR_peak_14525 chr13 30881207 30881337 + 4.97236 NA promoter-TSS (NM_001014380) promoter-TSS (NM_001014380) -81 NM_001014380 84056 Hs.243596 NM_032116 HPRD:13753 KATNAL1 - katanin p60 subunit A-like 1 protein-coding 13-PTNLD9-TUMOR_peak_19832 chr16 79320998 79321200 + 4.97236 NA Intergenic AmnSINE1|SINE|Deu 313523 NM_005360 4094 Hs.134859 NM_005360 HPRD:01518 MAF CCA4|c-MAF v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog protein-coding 13-PTNLD9-TUMOR_peak_15678 chr14 50016635 50016729 + 4.97236 NA Intergenic MER21B|LTR|ERVL 36452 NM_001032 6235 Hs.156367 NM_001032 HPRD:04698 RPS29 DBA13|S29 ribosomal protein S29 protein-coding 13-PTNLD9-TUMOR_peak_22794 chr18 21552497 21552750 + 4.97236 NA Intergenic L2a|LINE|L2 -20114 NM_153211 125488 Hs.128576 NM_153211 HPRD:08745 TTC39C C18orf17|HsT2697 tetratricopeptide repeat domain 39C protein-coding 13-PTNLD9-TUMOR_peak_33177 chr22 35860524 35860628 + 4.97236 NA Intergenic MIR|SINE|MIR 64460 NM_006739 4174 Hs.517582 NM_006739 HPRD:04075 MCM5 CDC46|P1-CDC46 minichromosome maintenance complex component 5 protein-coding 13-PTNLD9-TUMOR_peak_33779 chr3 11713400 11713504 + 4.97236 NA intron (NM_001284390, intron 2 of 6) intron (NM_001284390, intron 2 of 6) -28001 NM_001128219 9686 Hs.740389 NM_014667 HPRD:11672 VGLL4 VGL-4 vestigial-like family member 4 protein-coding 13-PTNLD9-TUMOR_peak_25258 chr19 48148543 48148682 + 4.97236 NA intron (NM_015711, intron 1 of 14) L1MC4|LINE|L1 37159 NM_015711 29998 Hs.97244 NM_015711 HPRD:09296 GLTSCR1 - glioma tumor suppressor candidate region gene 1 protein-coding 13-PTNLD9-TUMOR_peak_22156 chr17 76320681 76320967 + 4.97236 NA Intergenic Intergenic 35336 NM_003955 9021 Hs.527973 NM_003955 HPRD:05006 SOCS3 ATOD4|CIS3|Cish3|SOCS-3|SSI-3|SSI3 suppressor of cytokine signaling 3 protein-coding 13-PTNLD9-TUMOR_peak_26210 chr2 16926937 16927123 + 4.97236 NA Intergenic Intergenic -79896 NM_030797 81553 Hs.467769 NM_030797 HPRD:07729 FAM49A - family with sequence similarity 49, member A protein-coding 13-PTNLD9-TUMOR_peak_15245 chr14 20945905 20946001 + 4.97236 NA 3' UTR (NM_000270, exon 6 of 6) 3' UTR (NM_000270, exon 6 of 6) 8415 NM_000270 4860 Hs.75514 NM_000270 PNP NP|PRO1837|PUNP purine nucleoside phosphorylase protein-coding 13-PTNLD9-TUMOR_peak_37017 chr3 185120507 185120601 + 4.97236 NA intron (NM_004721, intron 1 of 13) intron (NM_004721, intron 1 of 13) 39718 NM_004721 9175 Hs.591306 NM_004721 HPRD:05372 MAP3K13 LZK|MEKK13|MLK mitogen-activated protein kinase kinase kinase 13 protein-coding 13-PTNLD9-TUMOR_peak_21657 chr17 57847374 57847468 + 4.97236 NA intron (NM_030938, intron 6 of 11) intron (NM_030938, intron 6 of 11) 62558 NM_030938 81671 Hs.444569 NM_030938 HPRD:15649 VMP1 EPG3|TANGO5|TMEM49 vacuole membrane protein 1 protein-coding 13-PTNLD9-TUMOR_peak_11107 chr11 106604895 106605005 + 4.97236 NA intron (NM_000855, intron 6 of 7) intron (NM_000855, intron 6 of 7) 284221 NM_000855 2977 Hs.24321 NM_000855 HPRD:03146 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1, soluble, alpha 2 protein-coding 13-PTNLD9-TUMOR_peak_21282 chr17 44820362 44820456 + 4.97236 NA intron (NR_040116, intron 16 of 19) intron (NR_040116, intron 16 of 19) 75717 NM_030753 7473 Hs.445884 NM_030753 HPRD:01318 WNT3 INT4 wingless-type MMTV integration site family, member 3 protein-coding 13-PTNLD9-TUMOR_peak_7672 chr10 73029977 73030071 + 4.97236 NA intron (NM_001244889, intron 1 of 15) AluSx|SINE|Alu -48986 NR_033414 55315 Hs.438419 NM_018344 HPRD:11570 SLC29A3 ENT3|HCLAP|HJCD|PHID solute carrier family 29 (equilibrative nucleoside transporter), member 3 protein-coding 13-PTNLD9-TUMOR_peak_41425 chr5 80922515 80922701 + 4.97236 NA intron (NM_001256735, intron 3 of 15) intron (NM_001256735, intron 3 of 15) 124464 NM_001256732 23635 Hs.102735 NM_012446 SSBP2 HSPC116|SOSS-B2 single-stranded DNA binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_48122 chr7 78811761 78811892 + 4.97236 NA intron (NM_001301128, intron 1 of 20) THE1B|LTR|ERVL-MaLR 173522 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_10721 chr11 77762766 77762860 + 4.96796 NA intron (NM_001203262, intron 1 of 2) AluJb|SINE|Alu -5576 NM_001282406 65987 Hs.709780 NM_023930 HPRD:13764 KCTD14 - potassium channel tetramerization domain containing 14 protein-coding 13-PTNLD9-TUMOR_peak_27842 chr2 101618670 101618764 + 4.96796 NA promoter-TSS (NM_001099693) promoter-TSS (NM_001099693) 26 NM_001098577 6160 Hs.469473 NM_000993 HPRD:17994 RPL31 L31 ribosomal protein L31 protein-coding 13-PTNLD9-TUMOR_peak_37108 chr3 187130036 187130130 + 4.96796 NA Intergenic L1PA2|LINE|L1 43915 NM_022147 64108 Hs.43388 NM_022147 RTP4 IFRG28|Z3CXXC4 receptor (chemosensory) transporter protein 4 protein-coding 13-PTNLD9-TUMOR_peak_6244 chr10 739649 739745 + 4.96796 NA Intergenic Intergenic -4089 NM_014974 22982 Hs.432397 NM_014974 HPRD:17200 DIP2C KIAA0934 DIP2 disco-interacting protein 2 homolog C (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_11489 chr11 123451402 123451589 + 4.96796 NA intron (NM_001286563, intron 3 of 20) intron (NM_001286563, intron 3 of 20) 20525 NM_001286564 57476 Hs.144725 NM_020716 ENSG00000023171 GRAMD1B - GRAM domain containing 1B protein-coding 13-PTNLD9-TUMOR_peak_8553 chr10 126490283 126490433 + 4.96796 NA promoter-TSS (NM_032182) promoter-TSS (NM_032182) 4 NM_032182 23172 Hs.280695 NM_032182 HPRD:13783 FAM175B ABRO1|KIAA0157 family with sequence similarity 175, member B protein-coding 13-PTNLD9-TUMOR_peak_54335 chr9 110037273 110037367 + 4.96796 NA Intergenic L2a|LINE|L2 -8197 NM_002874 5887 Hs.521640 NM_002874 HPRD:06772 RAD23B HHR23B|HR23B|P58 RAD23 homolog B (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_27129 chr2 66723030 66723133 + 4.96796 NA intron (NM_002398, intron 7 of 12) intron (NM_002398, intron 7 of 12) 60549 NM_002398 4211 Hs.526754 NM_002398 HPRD:03442 MEIS1 - Meis homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_29296 chr2 185511064 185511198 + 4.96796 NA intron (NM_194250, intron 1 of 3) L1PA16|LINE|L1 48038 NM_194250 91752 Hs.159528 NM_194250 HPRD:12804 ZNF804A C2orf10 zinc finger protein 804A protein-coding 13-PTNLD9-TUMOR_peak_13060 chr12 58292909 58293153 + 4.96796 NA Intergenic Intergenic 36916 NR_038269 100506844 Hs.90286 NR_038269 LOC100506844 - uncharacterized LOC100506844 ncRNA 13-PTNLD9-TUMOR_peak_55844 chrX 49041227 49041376 + 4.96796 NA intron (NM_006150, intron 1 of 8) intron (NM_006150, intron 1 of 8) 1475 NM_006150 4007 Hs.732712 NM_006150 HPRD:02120 PRICKLE3 LMO6 prickle homolog 3 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_15111 chr13 110790732 110790942 + 4.96796 NA Intergenic CpG 168659 NM_001845 1282 Hs.17441 NM_001845 HPRD:00359 COL4A1 HANAC|ICH|POREN1|arresten collagen, type IV, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_32697 chr22 18584276 18584537 + 4.96796 NA Intergenic Intergenic -9047 NM_018943 51807 Hs.137400 NM_018943 HPRD:05763 TUBA8 TUBAL2 tubulin, alpha 8 protein-coding 13-PTNLD9-TUMOR_peak_53192 chr9 37753959 37754053 + 4.96796 NA intron (NR_104612, intron 1 of 8) intron (NR_104612, intron 1 of 8) 206 NM_001286954 158234 Hs.655614 NM_144964 HPRD:15242 TRMT10B RG9MTD3|bA3J10.9 tRNA methyltransferase 10 homolog B (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_3373 chr1 146950376 146950567 + 4.96796 NA intron (NR_038423, intron 3 of 3) LTR3B_|LTR|ERVK 39228 NR_038423 100289211 Hs.323484 NR_038423 LINC00624 - long intergenic non-protein coding RNA 624 ncRNA 13-PTNLD9-TUMOR_peak_40028 chr4 186488210 186488327 + 4.96796 NA Intergenic Intergenic -31556 NR_047562 27295 Hs.701364 NM_014476 PDLIM3 ALP PDZ and LIM domain 3 protein-coding 13-PTNLD9-TUMOR_peak_6861 chr10 31608400 31608494 + 4.96796 NA promoter-TSS (NR_024284) promoter-TSS (NR_024284) 346 NM_001174095 6935 Hs.124503 NM_030751 HPRD:01798 ZEB1 AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A zinc finger E-box binding homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_23386 chr18 61090127 61090221 + 4.96671 NA promoter-TSS (NM_004869) promoter-TSS (NM_004869) -422 NM_004869 9525 Hs.126550 NM_004869 HPRD:15653 VPS4B SKD1|SKD1B|VPS4-2 vacuolar protein sorting 4 homolog B (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_36980 chr3 184079386 184079523 + 4.96571 NA promoter-TSS (NM_004366) promoter-TSS (NM_004366) -15 NM_001171087 1181 Hs.436847 NM_004366 HPRD:02782 CLCN2 CIC-2|CLC2|ECA2|ECA3|EGI11|EGI3|EGMA|EJM6|EJM8|LKPAT|clC-2 chloride channel, voltage-sensitive 2 protein-coding 13-PTNLD9-TUMOR_peak_10172 chr11 64610555 64610716 + 4.96353 NA intron (NM_017525, intron 1 of 36) intron (NM_017525, intron 1 of 36) 1406 NM_017525 55561 Hs.293590 NM_017525 HPRD:13013 CDC42BPG DMPK2|HSMDPKIN|KAPPA-200|MRCKG|MRCKgamma CDC42 binding protein kinase gamma (DMPK-like) protein-coding 13-PTNLD9-TUMOR_peak_48297 chr7 91763315 91763464 + 4.96353 NA promoter-TSS (NR_122109) promoter-TSS (NR_122109) 451 NM_000786 1595 Hs.417077 NM_000786 HPRD:03381 CYP51A1 CP51|CYP51|CYPL1|LDM|P450-14DM|P450L1 cytochrome P450, family 51, subfamily A, polypeptide 1 protein-coding 13-PTNLD9-TUMOR_peak_45876 chr6 109705778 109705872 + 4.96281 NA Intergenic MER20|DNA|hAT-Charlie -2063 NM_001142401 8763 Hs.520313 NM_006016 HPRD:04523 CD164 MGC-24|MUC-24|endolyn CD164 molecule, sialomucin protein-coding 13-PTNLD9-TUMOR_peak_1168 chr1 37454088 37454217 + 4.96281 NA intron (NM_000831, intron 1 of 15) intron (NM_000831, intron 1 of 15) 45692 NM_000831 2899 Hs.128848 NM_000831 HPRD:00691 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate receptor, ionotropic, kainate 3 protein-coding 13-PTNLD9-TUMOR_peak_4164 chr1 161691867 161692001 + 4.96268 NA promoter-TSS (NM_001288831) promoter-TSS (NM_001288831) -509 NM_001288831 127943 Hs.517422 NM_001002901 HPRD:08093 FCRLB FCRL2|FCRLM2|FCRLY|FREB-2|FcRY Fc receptor-like B protein-coding 13-PTNLD9-TUMOR_peak_54002 chr9 94896757 94896856 + 4.96268 NA intron (NR_015444, intron 2 of 12) intron (NR_015444, intron 2 of 12) 1690 NR_015444 100128076 Hs.716275 NR_015444 LOC100128076 - protein tyrosine phosphatase pseudogene pseudo 13-PTNLD9-TUMOR_peak_54997 chr9 137029600 137029731 + 4.96268 NA promoter-TSS (NR_023344) promoter-TSS (NR_023344) 21 NR_023344 100151684 Hs.545589 NR_023344 ENSG00000221676 RNU6ATAC RNU6ATAC1|U6ATAC RNA, U6atac small nuclear (U12-dependent splicing) snRNA 13-PTNLD9-TUMOR_peak_32902 chr22 23027275 23027370 + 4.96268 NA Intergenic Intergenic 38540 NM_199127 91227 Hs.450000 NM_080839 GGTLC2 GGTL4 gamma-glutamyltransferase light chain 2 protein-coding 13-PTNLD9-TUMOR_peak_15731 chr14 51142446 51142675 + 4.96268 NA Intergenic LTR32|LTR|ERVL -7489 NM_021818 60485 Hs.642842 NM_021818 HPRD:06229 SAV1 SAV|WW45|WWP4 salvador family WW domain containing protein 1 protein-coding 13-PTNLD9-TUMOR_peak_20072 chr16 88454518 88454627 + 4.96268 NA Intergenic Intergenic -39307 NM_001127464 84627 Hs.54925 NM_001127464 ENSG00000225614 ZNF469 BCS|BCS1 zinc finger protein 469 protein-coding 13-PTNLD9-TUMOR_peak_12821 chr12 52637267 52637497 + 4.95302 NA intron (NM_005556, intron 6 of 8) L2a|LINE|L2 10428 NM_005556 3855 Hs.411501 NM_005556 HPRD:01014 KRT7 CK7|K2C7|K7|SCL keratin 7 protein-coding 13-PTNLD9-TUMOR_peak_49294 chr7 137686270 137686486 + 4.95279 NA exon (NM_001253775, exon 1 of 4) exon (NM_001253775, exon 1 of 4) 469 NM_194071 64764 Hs.490273 NM_194071 HPRD:16391 CREB3L2 BBF2H7 cAMP responsive element binding protein 3-like 2 protein-coding 13-PTNLD9-TUMOR_peak_49762 chr7 153736719 153736850 + 4.95266 NA intron (NM_001039350, intron 1 of 25) intron (NM_001039350, intron 1 of 25) -12719 NM_130797 1804 Hs.490684 NM_001936 HPRD:00525 DPP6 DPPX|VF2 dipeptidyl-peptidase 6 protein-coding 13-PTNLD9-TUMOR_peak_19104 chr16 32661967 32662061 + 4.95266 NA Intergenic CpG 25434 NM_001205259 653550 Hs.592038 NM_001205259 ENSG00000205457 TP53TG3C TP53TG3 TP53 target 3C protein-coding 13-PTNLD9-TUMOR_peak_47377 chr7 44836487 44836765 + 4.95266 NA intron (NM_021130, intron 1 of 4) CpG 391 NM_001300981 5478 Hs.356331 NM_021130 HPRD:00457 PPIA CYPA|CYPH|HEL-S-69p peptidylprolyl isomerase A (cyclophilin A) protein-coding 13-PTNLD9-TUMOR_peak_4338 chr1 168440513 168440626 + 4.94812 NA Intergenic Intergenic -48675 NR_037851 100505918 Hs.568494 NR_037851 LOC100505918 - uncharacterized LOC100505918 ncRNA 13-PTNLD9-TUMOR_peak_50164 chr8 17639756 17639855 + 4.94812 NA intron (NM_001001924, intron 1 of 14) intron (NM_001001924, intron 1 of 14) 18621 NM_001001924 57509 Hs.7946 NM_020749 HPRD:11376 MTUS1 ATBP|ATIP|ICIS|MP44|MTSG1 microtubule associated tumor suppressor 1 protein-coding 13-PTNLD9-TUMOR_peak_56121 chrX 71327399 71327502 + 4.94812 NA intron (NM_001013627, intron 1 of 7) intron (NM_001013627, intron 1 of 7) 24301 NM_001024455 340526 Hs.512180 NM_001024455 HPRD:18594 RGAG4 6430402L03Rik|MAR5|MART5 retrotransposon gag domain containing 4 protein-coding 13-PTNLD9-TUMOR_peak_29115 chr2 174397479 174398054 + 4.94812 NA Intergenic L1PA3|LINE|L1 178205 NM_145810 83879 Hs.470654 NM_031942 HPRD:09874 CDCA7 JPO1 cell division cycle associated 7 protein-coding 13-PTNLD9-TUMOR_peak_5220 chr1 205568582 205568726 + 4.94812 NA intron (NM_181644, intron 9 of 9) intron (NM_181644, intron 9 of 9) 30542 NM_181644 148808 Hs.567714 NM_181644 HPRD:13228 MFSD4 UNQ3064 major facilitator superfamily domain containing 4 protein-coding 13-PTNLD9-TUMOR_peak_1905 chr1 57044155 57044249 + 4.94812 NA intron (NM_003713, intron 1 of 5) CpG 1055 NM_003713 8613 Hs.405156 NM_003713 HPRD:06179 PPAP2B Dri42|LPP3|PAP2B|VCIP phosphatidic acid phosphatase type 2B protein-coding 13-PTNLD9-TUMOR_peak_41128 chr5 67851870 67851964 + 4.94812 NA Intergenic Intergenic 263521 NM_001242466 5295 Hs.132225 NM_181504 HPRD:01381 PIK3R1 AGM7|GRB1|p85|p85-ALPHA phosphoinositide-3-kinase, regulatory subunit 1 (alpha) protein-coding 13-PTNLD9-TUMOR_peak_31699 chr20 56784936 56785100 + 4.94812 NA Intergenic Intergenic 59035 NM_178456 128602 Hs.43977 NM_178456 HPRD:12787 C20orf85 LLC1|bA196N14.1 chromosome 20 open reading frame 85 protein-coding 13-PTNLD9-TUMOR_peak_12573 chr12 40618678 40618810 + 4.94812 NA promoter-TSS (NM_198578) promoter-TSS (NM_198578) -69 NM_198578 120892 Hs.187636 NM_198578 ENSG00000188906 LRRK2 AURA17|DARDARIN|PARK8|RIPK7|ROCO2 leucine-rich repeat kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_21188 chr17 43050539 43050633 + 4.94812 NA Intergenic AluJr|SINE|Alu -4942 NM_006688 10882 Hs.134012 NM_006688 HPRD:12712 C1QL1 C1QRF|C1QTNF14|CRF complement component 1, q subcomponent-like 1 protein-coding 13-PTNLD9-TUMOR_peak_2548 chr1 94788400 94788530 + 4.94254 NA Intergenic Intergenic -85158 NM_004815 9411 Hs.483238 NM_004815 ARHGAP29 PARG1 Rho GTPase activating protein 29 protein-coding 13-PTNLD9-TUMOR_peak_41805 chr5 114961317 114961602 + 4.94254 NA exon (NM_181836, exon 1 of 3) exon (NM_181836, exon 1 of 3) 417 NM_001164468 100302736 NM_001164468 ENSG00000243414 TMED7-TICAM2 - TMED7-TICAM2 readthrough protein-coding 13-PTNLD9-TUMOR_peak_19343 chr16 53088765 53088984 + 4.94254 NA promoter-TSS (NM_025134) promoter-TSS (NM_025134) -71 NM_025134 80205 Hs.59159 NM_025134 HPRD:08570 CHD9 AD013|CReMM|KISH2|PRIC320 chromodomain helicase DNA binding protein 9 protein-coding 13-PTNLD9-TUMOR_peak_17197 chr15 45004872 45005022 + 4.94254 NA intron (NM_004048, intron 1 of 3) AluJr|SINE|Alu 1262 NM_004048 567 Hs.534255 NM_004048 B2M - beta-2-microglobulin protein-coding 13-PTNLD9-TUMOR_peak_5512 chr1 223537326 223537489 + 4.93785 NA 5' UTR (NM_017982, exon 1 of 9) 5' UTR (NM_017982, exon 1 of 9) 137 NM_017982 55061 Hs.497841 NM_017982 HPRD:07641 SUSD4 PRO222 sushi domain containing 4 protein-coding 13-PTNLD9-TUMOR_peak_28140 chr2 114030775 114031038 + 4.93785 NA intron (NM_013952, intron 2 of 11) intron (NM_013952, intron 2 of 11) 5592 NM_013952 7849 Hs.469728 NM_003466 HPRD:01335 PAX8 - paired box 8 protein-coding 13-PTNLD9-TUMOR_peak_16885 chr15 29762961 29763261 + 4.93785 NA intron (NM_015307, intron 1 of 10) intron (NM_015307, intron 1 of 10) 99816 NM_015307 23359 Hs.383564 NM_015307 ENSG00000104059 FAM189A1 TMEM228 family with sequence similarity 189, member A1 protein-coding 13-PTNLD9-TUMOR_peak_33855 chr3 13696872 13697023 + 4.93785 NA intron (NR_027103, intron 1 of 5) CpG 4726 NR_027103 285375 Hs.319969 NR_027103 ENSG00000224514 LINC00620 - long intergenic non-protein coding RNA 620 ncRNA 13-PTNLD9-TUMOR_peak_49102 chr7 130756856 130757046 + 4.93785 NA intron (NR_109850, intron 2 of 5) MER41B|LTR|ERV1 34838 NR_024153 378805 Hs.150556 NM_001085379 ENSG00000226380 LINC-PINT LincRNA-Pint|MKLN1-AS1|PINT long intergenic non-protein coding RNA, p53 induced transcript ncRNA 13-PTNLD9-TUMOR_peak_17876 chr15 85270788 85270979 + 4.93697 NA Intergenic AluJr|SINE|Alu -11192 NM_001271919 23478 Hs.9534 NM_014300 HPRD:07503 SEC11A 1810012E07Rik|SEC11L1|SPC18|SPCS4A|sid2895 SEC11 homolog A (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_17095 chr15 40987186 40987393 + 4.93697 NA promoter-TSS (NM_001164270) promoter-TSS (NM_001164270) 14 NR_040058 100505648 Hs.586876 NR_040058 ENSG00000245849 RAD51-AS1 - RAD51 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_8301 chr10 108120684 108121015 + 4.93697 NA Intergenic MLT1E1|LTR|ERVL-MaLR -540758 NR_120625 101927549 Hs.556885 NR_120625 ENSG00000229466 LOC101927549 - uncharacterized LOC101927549 ncRNA 13-PTNLD9-TUMOR_peak_54593 chr9 119356991 119357098 + 4.93697 NA intron (NM_198187, intron 4 of 8) intron (NM_198187, intron 4 of 8) 90482 NR_033973 100128505 Hs.675821 NR_033973 ENSG00000229105 ASTN2-AS1 - ASTN2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_21367 chr17 46703210 46703383 + 4.93697 NA exon (NM_024017, exon 1 of 2) exon (NM_024017, exon 1 of 2) 539 NM_024017 3219 Hs.463350 NM_024017 HPRD:00852 HOXB9 HOX-2.5|HOX2|HOX2E homeobox B9 protein-coding 13-PTNLD9-TUMOR_peak_52896 chr9 21616169 21616352 + 4.93697 NA Intergenic MIRc|SINE|MIR -56563 NR_027054 554202 Hs.458096 NR_027054 MIR31HG - MIR31 host gene (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_33892 chr3 14464813 14464916 + 4.93697 NA intron (NM_001134367, intron 10 of 22) intron (NM_001134367, intron 10 of 22) 20788 NM_001134368 6533 Hs.529488 NM_003043 HPRD:01734 SLC6A6 TAUT solute carrier family 6 (neurotransmitter transporter), member 6 protein-coding 13-PTNLD9-TUMOR_peak_5686 chr1 228115795 228115978 + 4.93697 NA intron (NM_003395, intron 1 of 3) intron (NM_003395, intron 1 of 3) 13498 NR_049806 100847072 NR_049806 MIR5008 - microRNA 5008 ncRNA 13-PTNLD9-TUMOR_peak_34068 chr3 23782034 23782170 + 4.93697 NA Intergenic Intergenic -65282 NM_182666 7324 Hs.164853 NM_003341 HPRD:04225 UBE2E1 UBCH6 ubiquitin-conjugating enzyme E2E 1 protein-coding 13-PTNLD9-TUMOR_peak_29495 chr2 201124375 201124524 + 4.93697 NA Intergenic SSU-rRNA_Hsa|rRNA|rRNA -46155 NM_015535 26010 Hs.120323 NM_015535 HPRD:10916 SPATS2L DNAPTP6|SGNP spermatogenesis associated, serine-rich 2-like protein-coding 13-PTNLD9-TUMOR_peak_26985 chr2 56515239 56515347 + 4.93697 NA intron (NM_001080433, intron 2 of 5) intron (NM_001080433, intron 2 of 5) -102388 NR_125368 100129434 Hs.580330 NR_125368 ENSG00000233251 LOC100129434 - uncharacterized LOC100129434 ncRNA 13-PTNLD9-TUMOR_peak_41922 chr5 125704220 125704339 + 4.93697 NA intron (NM_001146319, intron 1 of 13) intron (NM_001146319, intron 1 of 13) 8491 NM_001146319 65983 Hs.363558 NM_023927 HPRD:11402 GRAMD3 NS3TP2 GRAM domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_42952 chr5 169600397 169600491 + 4.93697 NA Intergenic Intergenic 25701 NR_108022 100507267 Hs.634846 NR_108022 LINC01187 CTB-27N1.1|KIDR long intergenic non-protein coding RNA 1187 ncRNA 13-PTNLD9-TUMOR_peak_2451 chr1 91893830 91894011 + 4.93697 NA Intergenic L1PA8|LINE|L1 -23494 NM_001017975 164045 Hs.454818 NM_001017975 HPRD:13423 HFM1 MER3|POF9|SEC63D1|Si-11|Si-11-6|helicase HFM1, ATP-dependent DNA helicase homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_10412 chr11 68445009 68445210 + 4.93697 NA Intergenic Intergenic -6874 NM_015973 51083 Hs.278959 NM_015973 HPRD:00658 GAL GAL-GMAP|GALN|GLNN|GMAP galanin/GMAP prepropeptide protein-coding 13-PTNLD9-TUMOR_peak_7607 chr10 71246834 71247061 + 4.93697 NA intron (NM_012339, intron 3 of 7) intron (NM_012339, intron 3 of 7) 35721 NM_012339 23555 Hs.499941 NM_012339 HPRD:15511 TSPAN15 2700063A19Rik|NET-7|NET7|TM4SF15 tetraspanin 15 protein-coding 13-PTNLD9-TUMOR_peak_39386 chr4 138417534 138417636 + 4.93697 NA Intergenic L1PA2|LINE|L1 36067 NM_019035 54510 Hs.591691 NM_019035 HPRD:12205 PCDH18 PCDH68L protocadherin 18 protein-coding 13-PTNLD9-TUMOR_peak_15050 chr13 104316441 104316672 + 4.93697 NA Intergenic MLT1N2|LTR|ERVL-MaLR -381708 NR_049840 100847092 NR_049840 MIR548AS - microRNA 548as ncRNA 13-PTNLD9-TUMOR_peak_48764 chr7 106377362 106377467 + 4.93697 NA Intergenic MER50B|LTR|ERV1 -75780 NM_175884 168455 Hs.29692 NM_175884 HPRD:08202 CCDC71L C7orf74 coiled-coil domain containing 71-like protein-coding 13-PTNLD9-TUMOR_peak_48872 chr7 117222507 117222626 + 4.93697 NA intron (NM_000492, intron 11 of 26) intron (NM_000492, intron 11 of 26) 102549 NM_000492 1080 Hs.489786 NM_000492 HPRD:03883 CFTR ABC35|ABCC7|CF|CFTR/MRP|MRP7|TNR-CFTR|dJ760C5.1 cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7) protein-coding 13-PTNLD9-TUMOR_peak_43260 chr5 177962350 177962485 + 4.93697 NA intron (NM_173465, intron 2 of 28) intron (NM_173465, intron 2 of 28) 55139 NM_173465 91522 Hs.660026 NM_173465 HPRD:16733 COL23A1 - collagen, type XXIII, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_48161 chr7 81129069 81129197 + 4.93697 NA Intergenic Intergenic 270319 NM_001010933 3082 Hs.396530 NM_000601 HPRD:00799 HGF DFNB39|F-TCF|HGFB|HPTA|SF hepatocyte growth factor (hepapoietin A; scatter factor) protein-coding 13-PTNLD9-TUMOR_peak_21904 chr17 70585235 70585342 + 4.93697 NA intron (NR_036488, intron 1 of 3) intron (NR_036488, intron 1 of 3) 3655 NR_036488 100499467 Hs.157726 NR_036488 LINC00673 LINC00511 long intergenic non-protein coding RNA 673 ncRNA 13-PTNLD9-TUMOR_peak_23819 chr19 7953294 7953470 + 4.93697 NA promoter-TSS (NM_025061) promoter-TSS (NM_025061) -8 NM_001268284 80131 Hs.501511 NM_025061 HPRD:08670 LRRC8E - leucine rich repeat containing 8 family, member E protein-coding 13-PTNLD9-TUMOR_peak_18686 chr16 19443835 19444016 + 4.93697 NA intron (NM_001105249, intron 2 of 20) intron (NM_001105249, intron 2 of 20) 14907 NM_001261841 79838 Hs.115838 NM_024780 HPRD:15516 TMC5 - transmembrane channel-like 5 protein-coding 13-PTNLD9-TUMOR_peak_41776 chr5 113275887 113276017 + 4.93697 NA Intergenic Intergenic -422064 NM_021614 3781 Hs.98280 NM_021614 HPRD:09323 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2 protein-coding 13-PTNLD9-TUMOR_peak_7854 chr10 80938686 80938791 + 4.93697 NA intron (NM_020338, intron 4 of 24) intron (NM_020338, intron 4 of 24) 109946 NM_020338 57178 Hs.193118 NM_020338 HPRD:12115 ZMIZ1 MIZ|RAI17|TRAFIP10|ZIMP10|hZIMP10 zinc finger, MIZ-type containing 1 protein-coding 13-PTNLD9-TUMOR_peak_42585 chr5 148966402 148966548 + 4.93697 NA intron (NM_001001669, intron 1 of 12) L3|LINE|CR1 5340 NM_001001669 389337 Hs.256206 NM_001001669 HPRD:13454 ARHGEF37 - Rho guanine nucleotide exchange factor (GEF) 37 protein-coding 13-PTNLD9-TUMOR_peak_33751 chr3 10890153 10890264 + 4.93697 NA intron (NM_014229, intron 5 of 13) intron (NM_014229, intron 5 of 13) 32291 NM_014229 6538 Hs.657405 NM_014229 SLC6A11 GAT-3|GAT3|GAT4 solute carrier family 6 (neurotransmitter transporter), member 11 protein-coding 13-PTNLD9-TUMOR_peak_31355 chr20 47942756 47942865 + 4.93697 NA Intergenic Intergenic 45590 NR_003030 692057 NR_003030 ENSG00000212304 SNORD12 HBII-99|MIR1259|MIRN1259 small nucleolar RNA, C/D box 12 snoRNA 13-PTNLD9-TUMOR_peak_22976 chr18 37951791 37951933 + 4.93697 NA Intergenic Intergenic 305612 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 13-PTNLD9-TUMOR_peak_55091 chr9 140658016 140658216 + 4.93697 NA non-coding (NR_024341, exon 1 of 1) non-coding (NR_024341, exon 1 of 1) 642 NR_024341 643210 Hs.721002 NM_001039765 EHMT1-IT1 - EHMT1 intronic transcript 1 ncRNA 13-PTNLD9-TUMOR_peak_19588 chr16 67450198 67450348 + 4.93697 NA promoter-TSS (NM_013304) promoter-TSS (NM_013304) 66 NM_013304 29800 Hs.624541 NM_013304 HPRD:15707 ZDHHC1 C16orf1|HSU90653|ZNF377 zinc finger, DHHC-type containing 1 protein-coding 13-PTNLD9-TUMOR_peak_56577 chrX 146993207 146993414 + 4.93697 NA promoter-TSS (NM_001185082) promoter-TSS (NM_001185082) -159 NM_001185082 2332 Hs.103183 NM_002024 HPRD:02398 FMR1 FMRP|FRAXA|POF|POF1 fragile X mental retardation 1 protein-coding 13-PTNLD9-TUMOR_peak_16358 chr14 79219269 79219432 + 4.93697 NA intron (NR_073547, intron 8 of 20) intron (NR_073547, intron 8 of 20) 349276 NM_004796 9369 Hs.368307 NM_004796 NRXN3 C14orf60 neurexin 3 protein-coding 13-PTNLD9-TUMOR_peak_44043 chr6 19824754 19824890 + 4.93697 NA Intergenic Intergenic -12779 NM_001546 3400 Hs.519601 NM_001546 ID4 IDB4|bHLHb27 inhibitor of DNA binding 4, dominant negative helix-loop-helix protein protein-coding 13-PTNLD9-TUMOR_peak_10384 chr11 67723186 67723380 + 4.93147 NA Intergenic CpG 48312 NM_030930 81622 Hs.502989 NM_030930 HPRD:12191 UNC93B1 IIAE1|UNC93|UNC93B|Unc-93B1 unc-93 homolog B1 (C. elegans) protein-coding 13-PTNLD9-TUMOR_peak_28429 chr2 130902060 130902361 + 4.93147 NA intron (NM_207310, intron 1 of 7) CpG 497 NM_001258307 91409 Hs.29383 NM_207310 HPRD:08534 CCDC74B - coiled-coil domain containing 74B protein-coding 13-PTNLD9-TUMOR_peak_12023 chr12 7035291 7035385 + 4.92309 NA intron (NM_001007026, intron 1 of 9) intron (NM_001007026, intron 1 of 9) 1712 NM_001007026 1822 Hs.143766 NM_001940 HPRD:06311 ATN1 B37|D12S755E|DRPLA|HRS|NOD atrophin 1 protein-coding 13-PTNLD9-TUMOR_peak_45479 chr6 72183734 72183828 + 4.92156 NA Intergenic LTR53|LTR|ERVL 53051 NR_121615 102724000 Hs.145785 NR_121615 LOC102724000 - uncharacterized LOC102724000 ncRNA 13-PTNLD9-TUMOR_peak_34417 chr3 45634770 45634871 + 4.92156 NA Intergenic Intergenic -1503 NM_014240 8994 Hs.193370 NM_014240 LIMD1 - LIM domains containing 1 protein-coding 13-PTNLD9-TUMOR_peak_14118 chr12 122297288 122297399 + 4.92156 NA promoter-TSS (NM_002150) promoter-TSS (NM_002150) -574 NM_002150 3242 Hs.2899 NM_002150 HPRD:02041 HPD 4-HPPD|4HPPD|GLOD3|HPPDASE|PPD 4-hydroxyphenylpyruvate dioxygenase protein-coding 13-PTNLD9-TUMOR_peak_46998 chr7 20380544 20380730 + 4.92156 NA intron (NM_002214, intron 1 of 13) intron (NM_002214, intron 1 of 13) -9252 NR_110119 101927811 Hs.285724 NR_110119 ENSG00000271133 LOC101927811 - uncharacterized LOC101927811 ncRNA 13-PTNLD9-TUMOR_peak_27294 chr2 74229767 74229872 + 4.92156 NA intron (NM_001287491, intron 1 of 10) CpG 16288 NM_001287491 200424 Hs.516107 NM_144993 ENSG00000187605 TET3 - tet methylcytosine dioxygenase 3 protein-coding 13-PTNLD9-TUMOR_peak_50726 chr8 41997466 41997562 + 4.92156 NA Intergenic CpG -12950 NM_001134296 10947 Hs.654529 NM_006803 HPRD:09801 AP3M2 AP47B|CLA20|P47B adaptor-related protein complex 3, mu 2 subunit protein-coding 13-PTNLD9-TUMOR_peak_7316 chr10 49731476 49731688 + 4.92156 NA intron (NR_045675, intron 4 of 10) CpG -29890 NM_001256026 58504 Hs.655672 NM_021226 HPRD:12476 ARHGAP22 RhoGAP2|RhoGap22 Rho GTPase activating protein 22 protein-coding 13-PTNLD9-TUMOR_peak_43985 chr6 17600843 17601174 + 4.92156 NA exon (NM_016255, exon 1 of 5) exon (NM_016255, exon 1 of 5) 490 NM_016255 51439 Hs.95260 NM_016255 HPRD:13316 FAM8A1 AHCP family with sequence similarity 8, member A1 protein-coding 13-PTNLD9-TUMOR_peak_19692 chr16 70473151 70473245 + 4.92156 NA promoter-TSS (NM_006927) promoter-TSS (NM_006927) -207 NM_006927 6483 Hs.368611 NM_006927 HPRD:06220 ST3GAL2 Gal-NAc6S|SIAT4B|ST3GALII|ST3GalA.2 ST3 beta-galactoside alpha-2,3-sialyltransferase 2 protein-coding 13-PTNLD9-TUMOR_peak_44492 chr6 30853327 30853561 + 4.91931 NA 5' UTR (NM_001954, exon 3 of 19) 5' UTR (NM_001954, exon 3 of 19) 687 NM_001202523 780 Hs.631988 NM_001954 HPRD:02678 DDR1 CAK|CD167|DDR|EDDR1|HGK2|MCK10|NEP|NTRK4|PTK3|PTK3A|RTK6|TRKE discoidin domain receptor tyrosine kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_25430 chr19 50624426 50624605 + 4.91927 NA Intergenic AluYa5|SINE|Alu 1936 NR_024225 100169954 Hs.723094 NR_024225 SNAR-A11 - small ILF3/NF90-associated RNA A11 snRNA 13-PTNLD9-TUMOR_peak_27022 chr2 61991006 61991159 + 4.91427 NA Intergenic CpG 90196 NR_037710 84140 Hs.440466 NM_032180 ENSG00000170264 FAM161A RP28 family with sequence similarity 161, member A protein-coding 13-PTNLD9-TUMOR_peak_34223 chr3 33839889 33840156 + 4.91427 NA promoter-TSS (NM_001162429) promoter-TSS (NM_001162429) -41 NM_013374 10015 Hs.475896 NM_013374 HPRD:06425 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 13-PTNLD9-TUMOR_peak_15833 chr14 55568940 55569133 + 4.91427 NA Intergenic Intergenic -26899 NM_001177388 3958 Hs.531081 NM_002306 HPRD:01090 LGALS3 CBP35|GAL3|GALBP|GALIG|L31|LGALS2|MAC2 lectin, galactoside-binding, soluble, 3 protein-coding 13-PTNLD9-TUMOR_peak_8675 chr10 134822781 134823309 + 4.91427 NA Intergenic Intergenic 44007 NR_046231 399829 Hs.252872 NR_046231 ENSG00000240707 LINC01168 - long intergenic non-protein coding RNA 1168 ncRNA 13-PTNLD9-TUMOR_peak_51498 chr8 103918642 103918782 + 4.91427 NA Intergenic MLT1J|LTR|ERVL-MaLR -42315 NM_015878 51582 Hs.459106 NM_015878 HPRD:07443 AZIN1 OAZI|OAZIN|ODC1L antizyme inhibitor 1 protein-coding 13-PTNLD9-TUMOR_peak_43516 chr6 3244386 3244545 + 4.90950 NA Intergenic Intergenic -14697 NM_001128591 389362 Hs.207069 NM_001128591 ENSG00000180822 PSMG4 C6orf86|PAC4|bA506K6.2 proteasome (prosome, macropain) assembly chaperone 4 protein-coding 13-PTNLD9-TUMOR_peak_15850 chr14 55914878 55915073 + 4.90661 NA Intergenic Intergenic -7712 NM_199047 387332 Hs.528278 NM_199047 TBPL2 TBP2|TRF3 TATA box binding protein like 2 protein-coding 13-PTNLD9-TUMOR_peak_26244 chr2 19505540 19505641 + 4.90661 NA Intergenic Intergenic -42600 NR_039914 100616307 NR_039914 miRBase:MI0017398 MIR4757 - microRNA 4757 ncRNA 13-PTNLD9-TUMOR_peak_29771 chr2 216330211 216330305 + 4.90661 NA Intergenic Intergenic 11828 NR_110607 102724849 Hs.116161 NR_110607 LOC102724849 - uncharacterized LOC102724849 ncRNA 13-PTNLD9-TUMOR_peak_14656 chr13 42184164 42184258 + 4.90661 NA intron (NM_015058, intron 39 of 44) intron (NM_015058, intron 39 of 44) -41680 NR_049803 100847026 NR_049803 MIR5006 - microRNA 5006 ncRNA 13-PTNLD9-TUMOR_peak_37909 chr4 8737872 8738022 + 4.90661 NA Intergenic Intergenic 135596 NM_018942 3166 Hs.104134 NM_018942 HPRD:00873 HMX1 H6|NKX5-3 H6 family homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_37623 chr4 2512590 2512737 + 4.90661 NA intron (NM_001185010, intron 4 of 6) intron (NM_001185010, intron 4 of 6) 41483 NM_001185009 6047 Hs.66394 NM_002938 HPRD:04167 RNF4 SLX5|SNURF ring finger protein 4 protein-coding 13-PTNLD9-TUMOR_peak_23792 chr19 6801037 6801303 + 4.90661 NA intron (NM_001258207, intron 1 of 25) L2b|LINE|L2 28491 NM_005428 7409 Hs.116237 NM_005428 HPRD:01284 VAV1 VAV vav 1 guanine nucleotide exchange factor protein-coding 13-PTNLD9-TUMOR_peak_37918 chr4 8947611 8947721 + 4.90661 NA Intergenic HERVE-int|LTR|ERV1 -3811 NM_001040071 650293 Hs.535167 NM_001040071 LOC650293 - seven transmembrane helix receptor protein-coding 13-PTNLD9-TUMOR_peak_31522 chr20 51169183 51169277 + 4.90661 NA Intergenic Intergenic -68147 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 13-PTNLD9-TUMOR_peak_40082 chr4 190215916 190216032 + 4.90661 NA Intergenic L1MB4|LINE|L1 -364786 NR_121679 101928971 Hs.519164 NR_121679 ENSG00000250739 LINC01262 TCONS_l2_00021807 long intergenic non-protein coding RNA 1262 ncRNA 13-PTNLD9-TUMOR_peak_238 chr1 7551509 7551737 + 4.90661 NA intron (NM_015215, intron 6 of 22) intron (NM_015215, intron 6 of 22) -279706 NM_004781 9341 Hs.66708 NM_004781 HPRD:04711 VAMP3 CEB vesicle-associated membrane protein 3 protein-coding 13-PTNLD9-TUMOR_peak_19052 chr16 31084593 31084813 + 4.90366 NA 5' UTR (NM_001172668, exon 1 of 3) 5' UTR (NM_001172668, exon 1 of 3) 120 NM_001172668 79759 Hs.102928 NM_024706 HPRD:07828 ZNF668 - zinc finger protein 668 protein-coding 13-PTNLD9-TUMOR_peak_18834 chr16 25062883 25062977 + 4.90366 NA Intergenic Intergenic 19868 NR_038379 554206 Hs.552959 NR_038379 LOC554206 - leucine carboxyl methyltransferase 1 pseudogene pseudo 13-PTNLD9-TUMOR_peak_10212 chr11 65186508 65186726 + 4.90179 NA Intergenic Intergenic -3652 NR_028272 283131 Hs.523789 NR_002802 NEAT1 LINC00084|NCRNA00084|TncRNA|VINC nuclear paraspeckle assembly transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_35248 chr3 107111669 107111874 + 4.90170 NA Intergenic L2c|LINE|L2 15583 NM_032600 84692 Hs.164799 NM_032600 HPRD:14860 CCDC54 NYD-SP17|SP17 coiled-coil domain containing 54 protein-coding 13-PTNLD9-TUMOR_peak_44311 chr6 27560410 27560635 + 4.90170 NA Intergenic Intergenic -101292 NR_038293 100507173 Hs.635987 NR_038292 LINC01012 - long intergenic non-protein coding RNA 1012 ncRNA 13-PTNLD9-TUMOR_peak_30591 chr20 22441029 22441195 + 4.90170 NA Intergenic Intergenic -39831 NR_027089 284788 Hs.651993 NR_027089 ENSG00000204684 LOC284788 - uncharacterized LOC284788 ncRNA 13-PTNLD9-TUMOR_peak_32303 chr21 39498904 39499049 + 4.90170 NA intron (NR_026839, intron 2 of 2) intron (NR_026839, intron 2 of 2) 5431 NR_026839 84677 Hs.733345 NM_032589 HPRD:10924 DSCR8 C21orf65|CT25.1a|CT25.1b|MMA-1|MMA-1a|MMA-1b|MMA1|MTAG2 Down syndrome critical region gene 8 ncRNA 13-PTNLD9-TUMOR_peak_17316 chr15 54135473 54135625 + 4.90170 NA Intergenic AluJb|SINE|Alu -80474 NR_102334 256764 Hs.122125 NM_182758 HPRD:10987 WDR72 AI2A3 WD repeat domain 72 protein-coding 13-PTNLD9-TUMOR_peak_4645 chr1 181438985 181439187 + 4.90170 NA Intergenic Intergenic -13600 NM_001205293 777 Hs.437444 NM_000721 HPRD:03006 CACNA1E BII|CACH6|CACNL1A6|Cav2.3 calcium channel, voltage-dependent, R type, alpha 1E subunit protein-coding 13-PTNLD9-TUMOR_peak_51616 chr8 111887305 111887421 + 4.90170 NA Intergenic Intergenic 152299 NR_125417 101927459 Hs.575543 NR_125416 LOC101927459 - uncharacterized LOC101927459 ncRNA 13-PTNLD9-TUMOR_peak_56401 chrX 118110094 118110205 + 4.90170 NA promoter-TSS (NM_001289109) promoter-TSS (NM_001289109) -146 NM_001289109 79836 Hs.144266 NM_024778 HPRD:06708 LONRF3 RNF127 LON peptidase N-terminal domain and ring finger 3 protein-coding 13-PTNLD9-TUMOR_peak_48279 chr7 90974524 90974678 + 4.90170 NA Intergenic Intergenic 80818 NM_003505 8321 Hs.94234 NM_003505 HPRD:04558 FZD1 - frizzled class receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_31048 chr20 39164608 39164760 + 4.90170 NA Intergenic Intergenic 153196 NM_005461 9935 Hs.169487 NM_005461 HPRD:07129 MAFB KRML|MCTO v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog B protein-coding 13-PTNLD9-TUMOR_peak_6192 chr1 247526463 247526600 + 4.90170 NA Intergenic C-rich|Low_complexity|Low_complexity -31486 NM_032752 84838 Hs.654803 NM_032752 HPRD:15805 ZNF496 NIZP1|ZFP496|ZKSCAN17|ZSCAN49 zinc finger protein 496 protein-coding 13-PTNLD9-TUMOR_peak_45854 chr6 108455106 108455361 + 4.90170 NA Intergenic CpG -32029 NM_003269 7101 Hs.157688 NM_003269 HPRD:07230 NR2E1 TLL|TLX|XTLL nuclear receptor subfamily 2, group E, member 1 protein-coding 13-PTNLD9-TUMOR_peak_32896 chr22 22862819 22863000 + 4.90170 NA intron (NM_080764, intron 1 of 3) CpG 596 NM_080764 140883 Hs.43834 NM_080764 HPRD:11615 ZNF280B 5'OY11.1|D87009.C22.3|SUHW2|ZNF279|ZNF632 zinc finger protein 280B protein-coding 13-PTNLD9-TUMOR_peak_266 chr1 8242293 8242387 + 4.90170 NA Intergenic Intergenic -135805 NM_001080397 50651 Hs.463036 NM_001080397 ENSG00000162426 SLC45A1 DNB5 solute carrier family 45, member 1 protein-coding 13-PTNLD9-TUMOR_peak_34826 chr3 63770395 63770594 + 4.90170 NA Intergenic AluSx|SINE|Alu -34547 NR_026866 132200 Hs.506386 NM_138808 ENSG00000163632 C3orf49 - chromosome 3 open reading frame 49 ncRNA 13-PTNLD9-TUMOR_peak_54310 chr9 108282125 108282267 + 4.90170 NA intron (NM_001287191, intron 10 of 13) CpG -38215 NM_006731 2218 Hs.55777 NM_006731 HPRD:06308 FKTN CMD1X|FCMD|LGMD2M|MDDGA4|MDDGB4|MDDGC4 fukutin protein-coding 13-PTNLD9-TUMOR_peak_7441 chr10 60041223 60041317 + 4.90170 NA intron (NM_018464, intron 2 of 2) intron (NM_018464, intron 2 of 2) 12408 NM_018464 55847 Hs.370102 NM_018464 HPRD:12587 CISD1 C10orf70|ZCD1|mitoNEET CDGSH iron sulfur domain 1 protein-coding 13-PTNLD9-TUMOR_peak_24721 chr19 34882173 34882327 + 4.89649 NA intron (NM_000175, intron 9 of 17) intron (NM_000175, intron 9 of 17) -13053 NM_032346 84306 Hs.515344 NM_032346 HPRD:17480 PDCD2L - programmed cell death 2-like protein-coding 13-PTNLD9-TUMOR_peak_9520 chr11 34676454 34676630 + 4.89514 NA intron (NM_001206616, intron 6 of 8) intron (NM_001206616, intron 6 of 8) 22531 NM_001206616 26298 Hs.653859 NM_012153 EHF ESE3|ESE3B|ESEJ ets homologous factor protein-coding 13-PTNLD9-TUMOR_peak_19915 chr16 83932908 83933035 + 4.89514 NA exon (NM_012213, exon 1 of 5) exon (NM_012213, exon 1 of 5) 241 NM_012213 23417 Hs.644610 NM_012213 HPRD:05999 MLYCD MCD malonyl-CoA decarboxylase protein-coding 13-PTNLD9-TUMOR_peak_32223 chr21 36419924 36420094 + 4.89514 NA intron (NM_001754, intron 2 of 8) intron (NM_001754, intron 2 of 8) 1586 NM_001754 861 Hs.149261 NM_001754 HPRD:01043 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBFA2|EVI-1|PEBP2aB runt-related transcription factor 1 protein-coding 13-PTNLD9-TUMOR_peak_21325 chr17 45942235 45942439 + 4.89514 NA Intergenic Intergenic -9097 NM_199262 80320 Hs.253603 NM_199262 HPRD:12269 SP6 EPFN|EPIPROFIN|KLF14 Sp6 transcription factor protein-coding 13-PTNLD9-TUMOR_peak_49984 chr8 6710116 6710289 + 4.89514 NA Intergenic Intergenic -17036 NM_207411 389610 Hs.558840 NM_207411 XKR5 HARL2754|UNQ2754|XRG5A|XRG5BM XK, Kell blood group complex subunit-related family, member 5 protein-coding 13-PTNLD9-TUMOR_peak_4672 chr1 182669034 182669239 + 4.89514 NA Intergenic Intergenic -27069 NM_001102450 85397 Hs.20982 NM_033345 HPRD:06221 RGS8 - regulator of G-protein signaling 8 protein-coding 13-PTNLD9-TUMOR_peak_12829 chr12 52702103 52702197 + 4.89514 NA intron (NM_002284, intron 8 of 8) CpG-5370 6501 NM_002284 3892 Hs.278658 NM_002284 HPRD:03567 KRT86 HB6|Hb1|KRTHB1|KRTHB6|MNX|hHb6 keratin 86 protein-coding 13-PTNLD9-TUMOR_peak_13713 chr12 107486062 107486203 + 4.89444 NA intron (NM_004075, intron 1 of 12) intron (NM_004075, intron 1 of 12) 1503 NM_004075 1407 Hs.151573 NM_004075 HPRD:09050 CRY1 PHLL1 cryptochrome circadian clock 1 protein-coding 13-PTNLD9-TUMOR_peak_44818 chr6 36595697 36595837 + 4.89110 NA Intergenic Intergenic -5478 NR_037491 100500885 NR_037491 miRBase:MI0016433 MIR3925 - microRNA 3925 ncRNA 13-PTNLD9-TUMOR_peak_29847 chr2 219761740 219761937 + 4.89110 NA Intergenic Intergenic 16583 NM_025216 80326 Hs.121540 NM_025216 HPRD:16207 WNT10A OODD|SSPS|STHAG4 wingless-type MMTV integration site family, member 10A protein-coding 13-PTNLD9-TUMOR_peak_12708 chr12 49389289 49389394 + 4.89110 NA 3' UTR (NM_015086, exon 2 of 2) 3' UTR (NM_015086, exon 2 of 2) 3747 NM_015086 23109 Hs.591044 NM_015086 HPRD:10294 DDN - dendrin protein-coding 13-PTNLD9-TUMOR_peak_50658 chr8 38643026 38643152 + 4.89110 NA intron (NM_001146216, intron 1 of 12) intron (NM_001146216, intron 1 of 12) -1633 NM_001122824 6867 Hs.279245 NM_006283 HPRD:10391 TACC1 Ga55 transforming, acidic coiled-coil containing protein 1 protein-coding 13-PTNLD9-TUMOR_peak_11395 chr11 119040234 119040328 + 4.89110 NA intron (NM_001282144, intron 1 of 9) intron (NM_001282144, intron 1 of 9) 859 NM_024618 79671 Hs.524082 NM_024618 HPRD:17640 NLRX1 CLR11.3|DLNB26|NOD26|NOD5|NOD9 NLR family member X1 protein-coding 13-PTNLD9-TUMOR_peak_19369 chr16 54320804 54321066 + 4.88872 NA promoter-TSS (NM_024336) promoter-TSS (NM_024336) -557 NM_024336 79191 Hs.499205 NM_024336 HPRD:17162 IRX3 IRX-1|IRXB1 iroquois homeobox 3 protein-coding 13-PTNLD9-TUMOR_peak_4069 chr1 159902829 159902956 + 4.88872 NA intron (NM_020789, intron 9 of 20) intron (NM_020789, intron 9 of 20) -7560 NM_003564 8407 Hs.517168 NM_003564 HPRD:06864 TAGLN2 HA1756 transgelin 2 protein-coding 13-PTNLD9-TUMOR_peak_3781 chr1 154396199 154396422 + 4.88872 NA intron (NM_181359, intron 1 of 8) intron (NM_181359, intron 1 of 8) 18641 NM_181359 3570 Hs.135087 NM_000565 HPRD:01000 IL6R CD126|IL-6R-1|IL-6RA|IL6Q|IL6RA|IL6RQ|gp80 interleukin 6 receptor protein-coding 13-PTNLD9-TUMOR_peak_35872 chr3 129612202 129612369 + 4.88872 NA promoter-TSS (NR_037893) promoter-TSS (NR_037893) 134 NM_001128224 23023 Hs.477547 NM_015008 HPRD:15518 TMCC1 - transmembrane and coiled-coil domain family 1 protein-coding 13-PTNLD9-TUMOR_peak_49056 chr7 129794045 129794212 + 4.88872 NA Intergenic Intergenic 51210 NM_032842 84928 Hs.267245 NM_032842 HPRD:07871 TMEM209 NET31 transmembrane protein 209 protein-coding 13-PTNLD9-TUMOR_peak_30573 chr20 20691542 20691669 + 4.88435 NA intron (NM_020343, intron 1 of 39) intron (NM_020343, intron 1 of 39) 1661 NM_020343 57186 Hs.472285 NM_020343 ENSG00000188559 RALGAPA2 AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220 Ral GTPase activating protein, alpha subunit 2 (catalytic) protein-coding 13-PTNLD9-TUMOR_peak_52348 chr8 142288784 142288905 + 4.87972 NA Intergenic Intergenic -24116 NM_001286646 57210 Hs.372492 NM_001080431 ENSG00000022567 SLC45A4 - solute carrier family 45, member 4 protein-coding 13-PTNLD9-TUMOR_peak_51985 chr8 128746400 128746494 + 4.87972 NA promoter-TSS (NR_117101) promoter-TSS (NR_117101) -234 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility candidate 11 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_12825 chr12 52672885 52672979 + 4.87754 NA Intergenic Intergenic 12367 NM_002281 3887 Hs.658118 NM_002281 HPRD:03691 KRT81 HB1|Hb-1|KRTHB1|MLN137|ghHkb1|hHAKB2-1 keratin 81 protein-coding 13-PTNLD9-TUMOR_peak_48984 chr7 128337420 128337563 + 4.87653 NA Intergenic Intergenic -11624 NR_104243 84691 Hs.732440 NM_032599 HPRD:14861 FAM71F1 FAM137A|NYD-SP18 family with sequence similarity 71, member F1 protein-coding 13-PTNLD9-TUMOR_peak_384 chr1 10796993 10797145 + 4.87653 NA intron (NM_017766, intron 2 of 15) intron (NM_017766, intron 2 of 15) 59664 NM_001079843 54897 Hs.439894 NM_017766 HPRD:07897 CASZ1 CAS11|CST|SRG|ZNF693|dJ734G22.1 castor zinc finger 1 protein-coding 13-PTNLD9-TUMOR_peak_52678 chr9 4933288 4933500 + 4.87653 NA Intergenic Intergenic -51851 NM_004972 3717 Hs.656213 NM_004972 HPRD:00993 JAK2 JTK10|THCYT3 Janus kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_28053 chr2 112015409 112015503 + 4.87653 NA Intergenic LTR51|LTR|ERV1 63207 NR_039636 100616341 NR_039636 miRBase:MI0016777 MIR4435-2 - microRNA 4435-2 ncRNA 13-PTNLD9-TUMOR_peak_27380 chr2 83969668 83969849 + 4.87653 NA Intergenic MLT1H|LTR|ERVL-MaLR -548048 NR_003663 388965 Hs.664098 NM_001013648 HPRD:18390 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_40912 chr5 55652085 55652212 + 4.87653 NA Intergenic Intergenic -122962 NM_024669 79722 Hs.436214 NM_024669 HPRD:07758 ANKRD55 - ankyrin repeat domain 55 protein-coding 13-PTNLD9-TUMOR_peak_41117 chr5 67584184 67584396 + 4.87653 NA promoter-TSS (NM_181524) promoter-TSS (NM_181524) 38 NM_181524 5295 Hs.132225 NM_181504 HPRD:01381 PIK3R1 AGM7|GRB1|p85|p85-ALPHA phosphoinositide-3-kinase, regulatory subunit 1 (alpha) protein-coding 13-PTNLD9-TUMOR_peak_6146 chr1 245499754 245499946 + 4.87653 NA intron (NM_018012, intron 2 of 14) intron (NM_018012, intron 2 of 14) 181563 NM_018012 55083 Hs.368096 NM_018012 ENSG00000162849 KIF26B - kinesin family member 26B protein-coding 13-PTNLD9-TUMOR_peak_24542 chr19 23952714 23952831 + 4.87653 NA intron (NR_003662, intron 1 of 3) BSR/Beta|Satellite|Satellite 6956 NR_003662 388524 Hs.560655 NM_001005472 HPRD:14203 RPSAP58 RPSA_30_1642 ribosomal protein SA pseudogene 58 pseudo 13-PTNLD9-TUMOR_peak_1768 chr1 52088223 52088411 + 4.87653 NA intron (NM_148906, intron 1 of 22) MLT1F1|LTR|ERVL-MaLR 5771 NM_148906 114883 Hs.21938 NM_024586 HPRD:09479 OSBPL9 ORP-9|ORP9 oxysterol binding protein-like 9 protein-coding 13-PTNLD9-TUMOR_peak_44346 chr6 28048221 28048452 + 4.87646 NA promoter-TSS (NM_003447) promoter-TSS (NM_003447) -146 NM_003447 7718 Hs.55481 NM_003447 HPRD:02903 ZNF165 CT53|LD65|ZSCAN7 zinc finger protein 165 protein-coding 13-PTNLD9-TUMOR_peak_28729 chr2 152145666 152145769 + 4.86840 NA intron (NM_004688, intron 1 of 7) AluY|SINE|Alu 713 NM_004688 9111 Hs.54483 NM_004688 HPRD:04632 NMI - N-myc (and STAT) interactor protein-coding 13-PTNLD9-TUMOR_peak_5411 chr1 219716597 219716698 + 4.86840 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -329972 NR_002753 26828 NR_002753 ENSG00000199377 RNU5F-1 RNU5F|U5F RNA, U5F small nuclear 1 snRNA 13-PTNLD9-TUMOR_peak_37743 chr4 5446065 5446400 + 4.86740 NA intron (NM_018401, intron 6 of 11) L1PA2|LINE|L1 -80651 NM_005750 10141 Hs.177972 NM_005750 HPRD:12826 C4orf6 aC1 chromosome 4 open reading frame 6 protein-coding 13-PTNLD9-TUMOR_peak_53410 chr9 66700123 66700408 + 4.86740 NA Intergenic LTR10A|LTR|ERV1 -146354 NR_122076 403323 Hs.646340 NM_203449 LOC403323 - uncharacterized LOC403323 ncRNA 13-PTNLD9-TUMOR_peak_20989 chr17 38083874 38084006 + 4.86740 NA promoter-TSS (NM_139280) promoter-TSS (NM_139280) -56 NM_139280 94103 Hs.514151 NM_139280 HPRD:17803 ORMDL3 - ORMDL sphingolipid biosynthesis regulator 3 protein-coding 13-PTNLD9-TUMOR_peak_46876 chr7 8301445 8301590 + 4.86740 NA promoter-TSS (NR_125740) promoter-TSS (NR_125740) 165 NM_022307 3382 Hs.487561 NM_004968 HPRD:00971 ICA1 ICA69|ICAp69 islet cell autoantigen 1, 69kDa protein-coding 13-PTNLD9-TUMOR_peak_49323 chr7 138785175 138785345 + 4.86740 NA intron (NM_024625, intron 1 of 8) AluY|SINE|Alu 9205 NM_020119 56829 Hs.133512 NM_020119 HPRD:09534 ZC3HAV1 ARTD13|FLB6421|PARP13|ZAP|ZC3H2|ZC3HDC2 zinc finger CCCH-type, antiviral 1 protein-coding 13-PTNLD9-TUMOR_peak_14307 chr12 130610781 130610890 + 4.86740 NA Intergenic Intergenic 35388 NR_033834 440119 Hs.288262 NR_033834 ENSG00000250208 FZD10-AS1 - FZD10 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_9887 chr11 57335706 57335800 + 4.86740 NA promoter-TSS (NM_004223) promoter-TSS (NM_004223) 50 NM_198183 9246 Hs.425777 NM_004223 HPRD:04867 UBE2L6 RIG-B|UBCH8 ubiquitin-conjugating enzyme E2L 6 protein-coding 13-PTNLD9-TUMOR_peak_52848 chr9 19184412 19184516 + 4.86725 NA Intergenic Intergenic -46299 NR_073201 55667 Hs.249591 NM_017925 HPRD:12927 DENND4C C9orf55|C9orf55B|bA513M16.3 DENN/MADD domain containing 4C protein-coding 13-PTNLD9-TUMOR_peak_31618 chr20 54511027 54511134 + 4.86725 NA Intergenic L2|LINE|L2 69448 NM_080617 140689 Hs.126141 NM_080617 HPRD:16685 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 13-PTNLD9-TUMOR_peak_676 chr1 23912209 23912341 + 4.86725 NA Intergenic Intergenic -25990 NM_002167 3399 Hs.76884 NM_002167 HPRD:02608 ID3 HEIR-1|bHLHb25 inhibitor of DNA binding 3, dominant negative helix-loop-helix protein protein-coding 13-PTNLD9-TUMOR_peak_28821 chr2 158030266 158030453 + 4.86725 NA Intergenic Intergenic -83981 NM_014568 11227 Hs.269027 NM_014568 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 13-PTNLD9-TUMOR_peak_30524 chr20 18244461 18244697 + 4.86725 NA Intergenic MLT1F1|LTR|ERVL-MaLR -24348 NM_001282996 7692 Hs.472221 NM_003434 HPRD:04964 ZNF133 ZNF150|pHZ-13|pHZ-66 zinc finger protein 133 protein-coding 13-PTNLD9-TUMOR_peak_21100 chr17 40772788 40772949 + 4.86725 NA Intergenic AluJr|SINE|Alu -11423 NM_178126 162427 Hs.632262 NM_178126 HPRD:14108 FAM134C - family with sequence similarity 134, member C protein-coding 13-PTNLD9-TUMOR_peak_56542 chrX 135296780 135297048 + 4.86725 NA 3' UTR (NM_001173517, exon 18 of 18) 3' UTR (NM_001173517, exon 18 of 18) 17859 NM_001159699 2273 Hs.435369 NM_001449 HPRD:02157 FHL1 FHL-1|FHL1A|FHL1B|FLH1A|KYOT|SLIM|SLIM-1|SLIM1|SLIMMER|XMPMA four and a half LIM domains 1 protein-coding 13-PTNLD9-TUMOR_peak_10926 chr11 93642047 93642161 + 4.86725 NA Intergenic Intergenic -58436 NM_001144871 387804 Hs.512252 NM_001144871 VSTM5 C11orf90 V-set and transmembrane domain containing 5 protein-coding 13-PTNLD9-TUMOR_peak_13128 chr12 63360280 63360379 + 4.86725 NA Intergenic LTR10F|LTR|ERV1 -31664 NM_020700 57460 Hs.435479 NM_020700 ENSG00000111110 PPM1H ARHCL1|NERPP-2C|URCC2 protein phosphatase, Mg2+/Mn2+ dependent, 1H protein-coding 13-PTNLD9-TUMOR_peak_2951 chr1 115660875 115660969 + 4.86725 NA Intergenic L1MD|LINE|L1 -28801 NM_005725 10100 Hs.310458 NM_005725 HPRD:18233 TSPAN2 NET3|TSN2|TSPAN-2 tetraspanin 2 protein-coding 13-PTNLD9-TUMOR_peak_38415 chr4 53740158 53740290 + 4.86725 NA exon (NM_152540, exon 9 of 9) exon (NM_152540, exon 9 of 9) 11729 NM_023940 65997 Hs.8035 NM_023940 HPRD:15216 RASL11B - RAS-like, family 11, member B protein-coding 13-PTNLD9-TUMOR_peak_53039 chr9 33415596 33415783 + 4.86725 NA Intergenic Intergenic -13172 NM_001170 364 Hs.455323 NM_001170 HPRD:04277 AQP7 AQP7L|AQP9|AQPap|GLYCQTL aquaporin 7 protein-coding 13-PTNLD9-TUMOR_peak_53129 chr9 35790429 35790533 + 4.86725 NA Intergenic Intergenic -1925 NM_003995 4882 Hs.78518 NM_000907 HPRD:00166 NPR2 AMDM|ANPRB|ANPb|ECDM|GUC2B|GUCY2B|NPRB|NPRBi natriuretic peptide receptor 2 protein-coding 13-PTNLD9-TUMOR_peak_23194 chr18 48571436 48571530 + 4.86725 NA intron (NM_005359, intron 1 of 11) intron (NM_005359, intron 1 of 11) 14900 NM_005359 4089 Hs.75862 NM_005359 HPRD:02995 SMAD4 DPC4|JIP|MADH4|MYHRS SMAD family member 4 protein-coding 13-PTNLD9-TUMOR_peak_5326 chr1 209562855 209562957 + 4.86725 NA Intergenic Intergenic -39262 NM_001104548 642587 Hs.510543 NM_001104548 MIR205HG LINC00510 MIR205 host gene (non-protein coding) protein-coding 13-PTNLD9-TUMOR_peak_43 chr1 901517 901617 + 4.86565 NA promoter-TSS (NM_001160184) promoter-TSS (NM_001160184) -310 NM_001160184 84069 Hs.528691 NM_032129 HPRD:13190 PLEKHN1 - pleckstrin homology domain containing, family N member 1 protein-coding 13-PTNLD9-TUMOR_peak_42593 chr5 149109801 149109934 + 4.86565 NA promoter-TSS (NM_001172698) promoter-TSS (NM_001172698) 52 NM_133263 133522 Hs.483816 NM_133263 HPRD:10594 PPARGC1B ERRL1|PERC|PGC-1(beta)|PGC1B peroxisome proliferator-activated receptor gamma, coactivator 1 beta protein-coding 13-PTNLD9-TUMOR_peak_49095 chr7 130679270 130679407 + 4.86067 NA intron (NR_109855, intron 2 of 4) intron (NR_109855, intron 2 of 4) 81115 NR_109780 100506860 Hs.635013 NR_109780 LOC100506860 - uncharacterized LOC100506860 ncRNA 13-PTNLD9-TUMOR_peak_24772 chr19 36134290 36134502 + 4.85888 NA exon (NM_014209, exon 5 of 7) exon (NM_014209, exon 5 of 7) 1757 NM_001300974 2116 Hs.194061 NM_014209 HPRD:16871 ETV2 ER71|ETSRP71 ets variant 2 protein-coding 13-PTNLD9-TUMOR_peak_9966 chr11 60609383 60609546 + 4.84653 NA promoter-TSS (NM_024098) promoter-TSS (NM_024098) 35 NM_024098 79080 Hs.4253 NM_024098 HPRD:08322 CCDC86 - coiled-coil domain containing 86 protein-coding 13-PTNLD9-TUMOR_peak_46190 chr6 143381752 143381846 + 4.84653 NA promoter-TSS (NM_016108) promoter-TSS (NM_016108) -180 NM_001286588 51390 Hs.567501 NM_016108 HPRD:16346 AIG1 AIG-1|dJ95L4.1 androgen-induced 1 protein-coding 13-PTNLD9-TUMOR_peak_34572 chr3 49941301 49941448 + 4.84653 NA promoter-TSS (NM_002447) promoter-TSS (NM_002447) -68 NM_002447 4486 Hs.517973 NM_002447 HPRD:02545 MST1R CD136|CDw136|PTK8|RON macrophage stimulating 1 receptor (c-met-related tyrosine kinase) protein-coding 13-PTNLD9-TUMOR_peak_38810 chr4 87260292 87260386 + 4.84653 NA intron (NM_138982, intron 2 of 13) intron (NM_138982, intron 2 of 13) 21036 NM_138980 5602 Hs.13438 NM_002753 HPRD:04207 MAPK10 JNK3|JNK3A|PRKM10|SAPK1b|p493F12|p54bSAPK mitogen-activated protein kinase 10 protein-coding 13-PTNLD9-TUMOR_peak_9308 chr11 20631381 20631511 + 4.84653 NA intron (NM_004211, intron 5 of 15) intron (NM_004211, intron 5 of 15) 10500 NM_004211 9152 Hs.136557 NM_004211 SLC6A5 GLYT-2|GLYT2|HKPX3|NET1 solute carrier family 6 (neurotransmitter transporter), member 5 protein-coding 13-PTNLD9-TUMOR_peak_9559 chr11 36398814 36399058 + 4.84653 NA intron (NM_024841, intron 2 of 9) CpG-4034 1401 NM_001160168 79899 Hs.19987 NM_024841 HPRD:07854 PRR5L PROTOR2 proline rich 5 like protein-coding 13-PTNLD9-TUMOR_peak_51757 chr8 120947187 120947281 + 4.84653 NA intron (NM_022783, intron 3 of 8) intron (NM_022783, intron 3 of 8) 61339 NM_022783 64798 Hs.112981 NM_022783 HPRD:13137 DEPTOR DEP.6|DEPDC6 DEP domain containing MTOR-interacting protein protein-coding 13-PTNLD9-TUMOR_peak_8807 chr11 2197003 2197119 + 4.84653 NA Intergenic Intergenic 2768 NR_039834 100616126 NR_039834 miRBase:MI0017318 MIR4686 - microRNA 4686 ncRNA 13-PTNLD9-TUMOR_peak_7645 chr10 72319182 72319358 + 4.84653 NA intron (NM_014431, intron 18 of 19) L2a|LINE|L2 43261 NM_001083116 5551 Hs.2200 NM_005041 HPRD:01362 PRF1 FLH2|HPLH2|P1|PFN1|PFP perforin 1 (pore forming protein) protein-coding 13-PTNLD9-TUMOR_peak_16073 chr14 68031051 68031213 + 4.84653 NA intron (NM_020715, intron 7 of 28) intron (NM_020715, intron 7 of 28) 31124 NM_020715 57475 Hs.594236 NM_020715 HPRD:17862 PLEKHH1 - pleckstrin homology domain containing, family H (with MyTH4 domain) member 1 protein-coding 13-PTNLD9-TUMOR_peak_52786 chr9 15511173 15511355 + 4.84653 NA promoter-TSS (NM_021144) promoter-TSS (NM_021144) -261 NM_001128217 11168 Hs.658434 NM_021144 HPRD:04688 PSIP1 DFS70|LEDGF|PAIP|PSIP2|p52|p75 PC4 and SFRS1 interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_35171 chr3 99263727 99263960 + 4.84653 NA Intergenic Intergenic -93597 NM_020351 1295 Hs.654548 NM_001850 HPRD:00372 COL8A1 C3orf7 collagen, type VIII, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_21358 chr17 46555786 46555976 + 4.84653 NA Intergenic Intergenic 33686 NR_110804 101927166 Hs.149244 NR_110804 LOC101927166 - uncharacterized LOC101927166 ncRNA 13-PTNLD9-TUMOR_peak_14892 chr13 77601456 77601576 + 4.84653 NA promoter-TSS (NM_012158) promoter-TSS (NM_012158) -185 NM_012158 26224 Hs.508284 NM_012158 HPRD:05737 FBXL3 FBL3|FBL3A|FBXL3A F-box and leucine-rich repeat protein 3 protein-coding 13-PTNLD9-TUMOR_peak_21073 chr17 40176996 40177121 + 4.84653 NA TTS (NM_001242704) TTS (NM_001242704) 4971 NM_001144929 28511 Hs.632252 NM_017595 HPRD:07261 NKIRAS2 KBRAS2|kappaB-Ras2 NFKB inhibitor interacting Ras-like 2 protein-coding 13-PTNLD9-TUMOR_peak_17811 chr15 82979212 82979328 + 4.84653 NA intron (NM_001164465, intron 6 of 9) intron (NM_001164465, intron 6 of 9) -23634 NR_120378 102724034 Hs.694638 NR_120378 LOC102724034 - uncharacterized LOC102724034 ncRNA 13-PTNLD9-TUMOR_peak_32187 chr21 35058340 35058477 + 4.84653 NA intron (NM_003024, intron 1 of 39) intron (NM_003024, intron 1 of 39) 43624 NM_003024 6453 Hs.160324 NM_003024 HPRD:03898 ITSN1 ITSN|SH3D1A|SH3P17 intersectin 1 (SH3 domain protein) protein-coding 13-PTNLD9-TUMOR_peak_43704 chr6 8180687 8180810 + 4.84653 NA Intergenic Intergenic -77920 NM_004280 9521 Hs.602353 NM_004280 HPRD:10931 EEF1E1 AIMP3|P18 eukaryotic translation elongation factor 1 epsilon 1 protein-coding 13-PTNLD9-TUMOR_peak_9480 chr11 33998248 33998379 + 4.84653 NA Intergenic Intergenic -74917 NM_005898 4076 Hs.471818 NM_005898 HPRD:03108 CAPRIN1 GPIAP1|GPIP137|GRIP137|M11S1|RNG105|p137GPI cell cycle associated protein 1 protein-coding 13-PTNLD9-TUMOR_peak_46970 chr7 18554812 18554989 + 4.84653 NA intron (NM_001204148, intron 1 of 10) intron (NM_001204148, intron 1 of 10) 6000 NM_001204148 9734 Hs.196054 NM_014707 HPRD:05944 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 13-PTNLD9-TUMOR_peak_63 chr1 1100338 1100432 + 4.84614 NA Intergenic CpG -2099 NR_029639 406984 NR_029639 miRBase:MI0000342 MIR200B MIRN200B microRNA 200b ncRNA 13-PTNLD9-TUMOR_peak_46663 chr7 1078111 1078477 + 4.84614 NA intron (NM_001134395, intron 2 of 4) SVA_F|Other|Other -15632 NR_029898 442907 NR_029898 MIR339 MIRN339|hsa-mir-339 microRNA 339 ncRNA 13-PTNLD9-TUMOR_peak_5611 chr1 225841483 225841720 + 4.84614 NA promoter-TSS (NM_018212) promoter-TSS (NM_018212) -756 NM_018212 55740 Hs.497893 NM_018212 HPRD:12360 ENAH ENA|MENA|NDPP1 enabled homolog (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_32665 chr22 18121699 18121897 + 4.84614 NA intron (NM_001270727, intron 1 of 4) CpG 448 NM_001270731 23786 Hs.631672 NM_015367 HPRD:09822 BCL2L13 BCL-RAMBO|Bcl2-L-13|MIL1 BCL2-like 13 (apoptosis facilitator) protein-coding 13-PTNLD9-TUMOR_peak_10486 chr11 70329226 70329323 + 4.84614 NA intron (NR_110766, intron 8 of 8) MIRc|SINE|MIR 84662 NM_138565 2017 Hs.596164 NM_005231 HPRD:01268 CTTN EMS1 cortactin protein-coding 13-PTNLD9-TUMOR_peak_48092 chr7 76938282 76938534 + 4.84576 NA Intergenic L1MA5A|LINE|L1 -106107 NR_110073 101927243 Hs.547753 NR_110073 LOC101927243 - uncharacterized LOC101927243 ncRNA 13-PTNLD9-TUMOR_peak_37672 chr4 3657953 3658092 + 4.84420 NA Intergenic LTR56|LTR|ERV1 21560 NR_034136 100133461 Hs.554274 NR_034136 ENSG00000250632 LOC100133461 - uncharacterized LOC100133461 ncRNA 13-PTNLD9-TUMOR_peak_37564 chr4 1161504 1161699 + 4.84420 NA intron (NM_001128325, intron 6 of 6) CpG 5056 NM_012445 10417 Hs.302963 NM_012445 HPRD:16174 SPON2 DIL-1|DIL1|M-SPONDIN|MINDIN spondin 2, extracellular matrix protein protein-coding 13-PTNLD9-TUMOR_peak_241 chr1 7609435 7609545 + 4.84420 NA intron (NM_015215, intron 6 of 22) intron (NM_015215, intron 6 of 22) -221839 NM_004781 9341 Hs.66708 NM_004781 HPRD:04711 VAMP3 CEB vesicle-associated membrane protein 3 protein-coding 13-PTNLD9-TUMOR_peak_43357 chr5 180649071 180649534 + 4.84396 NA promoter-TSS (NM_201627) promoter-TSS (NM_201627) 331 NR_039781 100616342 NR_039781 miRBase:MI0017265 MIR4638 - microRNA 4638 ncRNA 13-PTNLD9-TUMOR_peak_36743 chr3 172241250 172241385 + 4.84284 NA promoter-TSS (NM_003810) promoter-TSS (NM_003810) -20 NM_001190942 8743 Hs.478275 NM_003810 HPRD:04670 TNFSF10 APO2L|Apo-2L|CD253|TL2|TRAIL tumor necrosis factor (ligand) superfamily, member 10 protein-coding 13-PTNLD9-TUMOR_peak_52250 chr8 138161835 138161979 + 4.84284 NA Intergenic MER77B|LTR|ERVL 263924 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 13-PTNLD9-TUMOR_peak_9094 chr11 12309477 12309638 + 4.84284 NA intron (NM_032867, intron 1 of 8) intron (NM_032867, intron 1 of 8) 1110 NM_032867 84953 Hs.128196 NM_032867 HPRD:08610 MICALCL Ebitein1 MICAL C-terminal like protein-coding 13-PTNLD9-TUMOR_peak_47929 chr7 73614216 73614415 + 4.84284 NA Intergenic AluSz|SINE|Alu 8787 NR_030321 693175 NR_030321 MIR590 MIRN590|hsa-mir-590 microRNA 590 ncRNA 13-PTNLD9-TUMOR_peak_36983 chr3 184091435 184091529 + 4.84284 NA intron (NM_001290003, intron 5 of 6) L3|LINE|CR1 4514 NM_001289997 7066 Hs.1166 NM_000460 HPRD:02500 THPO MGDF|MKCSF|ML|MPLLG|THCYT1|TPO thrombopoietin protein-coding 13-PTNLD9-TUMOR_peak_6618 chr10 20122212 20122331 + 4.84284 NA intron (NM_001282736, intron 1 of 12) intron (NM_001282736, intron 1 of 12) 16899 NM_032812 84898 Hs.99472 NM_032812 HPRD:08440 PLXDC2 TEM7R plexin domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_1856 chr1 54959453 54959565 + 4.84284 NA Intergenic L2c|LINE|L2 -54298 NM_015547 26027 Hs.745173 NM_015547 HPRD:07075 ACOT11 BFIT|STARD14|THEA|THEM1 acyl-CoA thioesterase 11 protein-coding 13-PTNLD9-TUMOR_peak_35403 chr3 112960719 112960845 + 4.84284 NA intron (NM_033254, intron 2 of 19) G-rich|Low_complexity|Low_complexity 29407 NM_033254 91653 Hs.591318 NM_033254 ENSG00000144857 BOC CDON2 BOC cell adhesion associated, oncogene regulated protein-coding 13-PTNLD9-TUMOR_peak_54491 chr9 115950338 115950432 + 4.83229 NA intron (NM_015258, intron 13 of 27) intron (NM_015258, intron 13 of 27) 33256 NM_015258 23307 Hs.522351 NM_015258 ENSG00000119321 FKBP15 FKBP133|KIAA0674|PPP1R76 FK506 binding protein 15, 133kDa protein-coding 13-PTNLD9-TUMOR_peak_52610 chr9 893973 894088 + 4.83229 NA exon (NM_021951, exon 3 of 5) exon (NM_021951, exon 3 of 5) 52340 NM_021951 1761 Hs.98586 NM_021951 HPRD:03885 DMRT1 CT154|DMT1 doublesex and mab-3 related transcription factor 1 protein-coding 13-PTNLD9-TUMOR_peak_19393 chr16 56279969 56280181 + 4.83229 NA TTS (NR_037499) TTS (NR_037499) 643 NR_037499 100500891 NR_037499 MIR3935 - microRNA 3935 ncRNA 13-PTNLD9-TUMOR_peak_34950 chr3 72107821 72107988 + 4.83229 NA intron (NR_104116, intron 5 of 6) intron (NR_104116, intron 5 of 6) 41702 NR_104116 285286 Hs.559386 NR_104116 LINC00877 - long intergenic non-protein coding RNA 877 ncRNA 13-PTNLD9-TUMOR_peak_41093 chr5 66419791 66419905 + 4.83229 NA intron (NM_001290226, intron 12 of 26) intron (NM_001290226, intron 12 of 26) 72769 NM_005582 4064 Hs.87205 NM_005582 HPRD:03749 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 13-PTNLD9-TUMOR_peak_45841 chr6 107424507 107424636 + 4.83229 NA intron (NM_001080450, intron 2 of 4) intron (NM_001080450, intron 2 of 4) 11065 NM_001080450 57673 Hs.418045 NM_001080450 ENSG00000178409 BEND3 KIAA1553 BEN domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_22840 chr18 25275585 25275745 + 4.83229 NA Intergenic Charlie1|DNA|hAT-Charlie 481780 NM_001792 1000 Hs.464829 NM_001792 HPRD:00226 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2, type 1, N-cadherin (neuronal) protein-coding 13-PTNLD9-TUMOR_peak_15853 chr14 56165979 56166092 + 4.83229 NA Intergenic LTR78|LTR|ERV1 -66928 NR_004844 645683 Hs.663461 NR_004844 ENSG00000177350 RPL13AP3 RPL13A_11_1370 ribosomal protein L13a pseudogene 3 pseudo 13-PTNLD9-TUMOR_peak_458 chr1 12634039 12634133 + 4.83229 NA intron (NM_004753, intron 4 of 5) intron (NM_004753, intron 4 of 5) 4965 NR_106788 102466722 NR_106788 MIR6730 hsa-mir-6730 microRNA 6730 ncRNA 13-PTNLD9-TUMOR_peak_19826 chr16 78850806 78850950 + 4.83229 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 717568 NR_120435 51741 Hs.461453 NM_016373 HPRD:05501 WWOX D16S432E|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 13-PTNLD9-TUMOR_peak_27030 chr2 62132743 62132840 + 4.83229 NA promoter-TSS (NM_152516) promoter-TSS (NM_152516) -12 NM_152516 150684 Hs.468702 NM_152516 COMMD1 C2orf5|MURR1 copper metabolism (Murr1) domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_31072 chr20 39739921 39740050 + 4.83229 NA intron (NM_003286, intron 13 of 20) intron (NM_003286, intron 13 of 20) -26176 NM_182811 5335 Hs.268177 NM_002660 HPRD:01398 PLCG1 NCKAP3|PLC-II|PLC1|PLC148|PLCgamma1 phospholipase C, gamma 1 protein-coding 13-PTNLD9-TUMOR_peak_46296 chr6 150776267 150776381 + 4.83229 NA Intergenic Intergenic 86296 NM_001164695 389434 Hs.310225 NM_203395 HPRD:16668 IYD C6orf71|DEHAL1|TDH4|dJ422F24.1 iodotyrosine deiodinase protein-coding 13-PTNLD9-TUMOR_peak_19406 chr16 56610925 56611154 + 4.83229 NA Intergenic Intergenic 12078 NM_032935 84560 Hs.567624 NM_032935 HPRD:12092 MT4 MT-4|MT-IV|MTIV metallothionein 4 protein-coding 13-PTNLD9-TUMOR_peak_27744 chr2 97466783 97466912 + 4.83229 NA intron (NM_020184, intron 5 of 6) intron (NM_020184, intron 5 of 6) 2832 NR_036074 100422928 NR_036074 MIR3127 - microRNA 3127 ncRNA 13-PTNLD9-TUMOR_peak_11118 chr11 107461800 107461906 + 4.83229 NA promoter-TSS (NR_028328) promoter-TSS (NR_028328) 36 NM_001130037 55531 Hs.495779 NM_018712 HPRD:10934 ELMOD1 - ELMO/CED-12 domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_46176 chr6 142890128 142890288 + 4.83229 NA intron (NR_027312, intron 1 of 2) MamRep605|Unknown|Unknown 68765 NR_027311 153910 Hs.350819 NR_027311 ENSG00000236366 LOC153910 - uncharacterized LOC153910 ncRNA 13-PTNLD9-TUMOR_peak_12174 chr12 12932521 12932741 + 4.83229 NA intron (NM_001130415, intron 1 of 1) L1ME3C|LINE|L1 -5910 NM_030817 81575 Hs.23388 NM_030817 HPRD:13153 APOLD1 VERGE apolipoprotein L domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_28195 chr2 118738430 118738524 + 4.83229 NA intron (NM_019044, intron 7 of 23) L1MB7|LINE|L1 33262 NM_019044 54520 Hs.107845 NM_019044 HPRD:08557 CCDC93 - coiled-coil domain containing 93 protein-coding 13-PTNLD9-TUMOR_peak_11525 chr11 125071461 125071732 + 4.83229 NA intron (NM_022062, intron 1 of 12) intron (NM_022062, intron 1 of 12) 37037 NM_022062 63876 Hs.278564 NM_022062 HPRD:17857 PKNOX2 PREP2 PBX/knotted 1 homeobox 2 protein-coding 13-PTNLD9-TUMOR_peak_8937 chr11 7273054 7273202 + 4.83229 NA promoter-TSS (NM_175733) promoter-TSS (NM_175733) -53 NM_175733 143425 Hs.177193 NM_175733 HPRD:11618 SYT9 - synaptotagmin IX protein-coding 13-PTNLD9-TUMOR_peak_40171 chr5 1117620 1117831 + 4.83047 NA Intergenic LTR8|LTR|ERV1 -5553 NM_006598 10723 Hs.172613 NM_006598 HPRD:09221 SLC12A7 KCC4 solute carrier family 12 (potassium/chloride transporter), member 7 protein-coding 13-PTNLD9-TUMOR_peak_21166 chr17 42402686 42402867 + 4.82655 NA promoter-TSS (NM_016016) promoter-TSS (NM_016016) -559 NM_001143780 51629 Hs.744880 NM_016016 HPRD:13040 SLC25A39 CGI69 solute carrier family 25, member 39 protein-coding 13-PTNLD9-TUMOR_peak_37797 chr4 6782072 6782206 + 4.82522 NA Intergenic L2a|LINE|L2 -2320 NM_001100590 9778 Hs.79276 NM_014743 HPRD:11070 KIAA0232 - KIAA0232 protein-coding 13-PTNLD9-TUMOR_peak_6811 chr10 30096478 30096654 + 4.82522 NA Intergenic Intergenic -71836 NM_003174 6840 Hs.499209 NM_003174 HPRD:04992 SVIL - supervillin protein-coding 13-PTNLD9-TUMOR_peak_52541 chr8 145909630 145909849 + 4.82522 NA Intergenic CpG -70851 NM_025251 80728 Hs.148988 NM_025251 HPRD:17224 ARHGAP39 CrGAP|Vilse Rho GTPase activating protein 39 protein-coding 13-PTNLD9-TUMOR_peak_35668 chr3 124880773 124880931 + 4.82522 NA intron (NM_024628, intron 5 of 13) intron (NM_024628, intron 5 of 13) -10456 NR_049815 100847039 NR_049815 MIR5092 - microRNA 5092 ncRNA 13-PTNLD9-TUMOR_peak_12865 chr12 53302042 53302178 + 4.82325 NA intron (NM_001256293, intron 1 of 8) intron (NM_001256293, intron 1 of 8) -3242 NM_002273 3856 Hs.533782 NM_002273 HPRD:01015 KRT8 CARD2|CK-8|CK8|CYK8|K2C8|K8|KO keratin 8 protein-coding 13-PTNLD9-TUMOR_peak_19244 chr16 46722798 46722907 + 4.82325 NA promoter-TSS (NM_014321) promoter-TSS (NM_014321) 292 NM_018206 55737 Hs.454528 NM_018206 VPS35 MEM3|PARK17 vacuolar protein sorting 35 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_53638 chr9 75194243 75194337 + 4.82080 NA intron (NM_138691, intron 2 of 23) intron (NM_138691, intron 2 of 23) 57573 NM_138691 117531 Hs.670211 NM_138691 HPRD:05988 TMC1 DFNA36|DFNB11|DFNB7 transmembrane channel-like 1 protein-coding 13-PTNLD9-TUMOR_peak_25828 chr19 59025330 59025505 + 4.82080 NA 3' UTR (NM_032792, exon 3 of 3) 3' UTR (NM_032792, exon 3 of 3) -1985 NM_012254 10998 Hs.292177 NM_012254 HPRD:04499 SLC27A5 ACSB|ACSVL6|BACS|BAL|FACVL3|FATP-5|FATP5|VLACSR|VLCS-H2|VLCSH2 solute carrier family 27 (fatty acid transporter), member 5 protein-coding 13-PTNLD9-TUMOR_peak_14700 chr13 45492543 45492642 + 4.82080 NA Intergenic Intergenic 71021 NM_012345 26747 Hs.525006 NM_012345 HPRD:05073 NUFIP1 NUFIP|bA540M5.1 nuclear fragile X mental retardation protein interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_15946 chr14 61568673 61568830 + 4.82080 NA Intergenic Intergenic 120786 NR_033344 145389 Hs.200738 NM_153811 HPRD:15382 SLC38A6 NAT-1 solute carrier family 38, member 6 protein-coding 13-PTNLD9-TUMOR_peak_23469 chr18 72921520 72921614 + 4.82080 NA promoter-TSS (NM_175907) promoter-TSS (NM_175907) -286 NM_175907 284273 Hs.465433 NM_175907 ZADH2 - zinc binding alcohol dehydrogenase domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_9971 chr11 60719621 60719798 + 4.82080 NA promoter-TSS (NM_016582) promoter-TSS (NM_016582) -452 NR_027391 51296 Hs.237856 NM_016582 HPRD:11565 SLC15A3 OCTP|PHT2|PTR3 solute carrier family 15 (oligopeptide transporter), member 3 protein-coding 13-PTNLD9-TUMOR_peak_19967 chr16 85120394 85120574 + 4.82080 NA intron (NM_014732, intron 11 of 12) intron (NM_014732, intron 11 of 12) 23666 NM_001286565 9764 Hs.301658 NM_014732 HPRD:17192 KIAA0513 - KIAA0513 protein-coding 13-PTNLD9-TUMOR_peak_54546 chr9 117501328 117501431 + 4.81734 NA Intergenic Intergenic 53431 NM_001204344 9966 Hs.23349 NM_005118 HPRD:04956 TNFSF15 TL1|TL1A|VEGI|VEGI192A tumor necrosis factor (ligand) superfamily, member 15 protein-coding 13-PTNLD9-TUMOR_peak_51155 chr8 74332209 74332441 + 4.81734 NA promoter-TSS (NR_038406) promoter-TSS (NR_038406) 16 NR_038406 100128126 Hs.679921 NR_038406 ENSG00000253302 STAU2-AS1 - STAU2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_1775 chr1 52499043 52499209 + 4.81734 NA non-coding (NR_046406, exon 3 of 3) non-coding (NR_046406, exon 3 of 3) 346 NM_138417 112970 Hs.476033 NM_138417 HPRD:14471 KTI12 SBBI81|TOT4 KTI12 homolog, chromatin associated (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_42017 chr5 131604580 131604790 + 4.81734 NA intron (NM_003687, intron 3 of 6) MIRb|SINE|MIR 11334 NM_003687 8572 Hs.424312 NM_003687 HPRD:04571 PDLIM4 RIL PDZ and LIM domain 4 protein-coding 13-PTNLD9-TUMOR_peak_11464 chr11 122568752 122568850 + 4.81734 NA intron (NM_032873, intron 1 of 13) intron (NM_032873, intron 1 of 13) 42403 NM_032873 84959 Hs.444075 NM_032873 HPRD:16463 UBASH3B STS-1|STS1|TULA-2|p70 ubiquitin associated and SH3 domain containing B protein-coding 13-PTNLD9-TUMOR_peak_27329 chr2 75095170 75095332 + 4.81734 NA intron (NM_000189, intron 3 of 17) intron (NM_000189, intron 3 of 17) 35469 NM_000189 3099 Hs.406266 NM_000189 HPRD:03080 HK2 HKII|HXK2 hexokinase 2 protein-coding 13-PTNLD9-TUMOR_peak_9907 chr11 57767313 57767491 + 4.81734 NA Intergenic L1PA2|LINE|L1 -23951 NM_001005212 219956 Hs.689841 NM_001005212 HPRD:17800 OR9Q1 - olfactory receptor, family 9, subfamily Q, member 1 protein-coding 13-PTNLD9-TUMOR_peak_38986 chr4 103541362 103541554 + 4.81734 NA Intergenic MLT1G3|LTR|ERVL-MaLR 118972 NM_001165412 4790 Hs.618430 NM_003998 HPRD:01238 NFKB1 EBP-1|KBF1|NF-kB1|NF-kappa-B|NF-kappaB|NFKB-p105|NFKB-p50|NFkappaB|p105|p50 nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 protein-coding 13-PTNLD9-TUMOR_peak_17490 chr15 67341794 67341953 + 4.81734 NA Intergenic Intergenic -16322 NM_005902 4088 Hs.727986 NM_005902 HPRD:04380 SMAD3 HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3 SMAD family member 3 protein-coding 13-PTNLD9-TUMOR_peak_8022 chr10 93998594 93998825 + 4.81734 NA intron (NM_014912, intron 2 of 9) intron (NM_014912, intron 2 of 9) 4327 NM_001178137 22849 Hs.131683 NM_014912 HPRD:16745 CPEB3 - cytoplasmic polyadenylation element binding protein 3 protein-coding 13-PTNLD9-TUMOR_peak_51426 chr8 101962726 101962890 + 4.81700 NA promoter-TSS (NM_001135702) promoter-TSS (NM_001135702) -9 NM_001135702 7534 Hs.492407 NM_003406 HPRD:03183 YWHAZ 14-3-3-zeta|HEL-S-3|HEL4|KCIP-1|YWHAD tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta protein-coding 13-PTNLD9-TUMOR_peak_40045 chr4 187112355 187112698 + 4.81700 NA promoter-TSS (NM_207352) promoter-TSS (NM_207352) 118 NR_046264 651430 Hs.727796 NR_046264 FLJ38576 - uncharacterized LOC651430 ncRNA 13-PTNLD9-TUMOR_peak_14417 chr13 22688982 22689076 + 4.81700 NA Intergenic Intergenic -95395 NR_103810 100506622 Hs.255773 NR_103810 LINC00540 - long intergenic non-protein coding RNA 540 ncRNA 13-PTNLD9-TUMOR_peak_45300 chr6 52704574 52704683 + 4.81700 NA intron (NM_153699, intron 2 of 6) intron (NM_153699, intron 2 of 6) 6265 NM_153699 221357 Hs.646984 NM_153699 HPRD:09620 GSTA5 - glutathione S-transferase alpha 5 protein-coding 13-PTNLD9-TUMOR_peak_26933 chr2 53994683 53994796 + 4.81700 NA promoter-TSS (NM_001008708) promoter-TSS (NM_001008708) -190 NM_001008708 494143 Hs.585944 NM_001008708 HPRD:17418 CHAC2 - ChaC, cation transport regulator homolog 2 (E. coli) protein-coding 13-PTNLD9-TUMOR_peak_17812 chr15 82988453 82988615 + 4.81483 NA intron (NM_001164465, intron 6 of 9) intron (NM_001164465, intron 6 of 9) -14370 NR_120378 102724034 Hs.694638 NR_120378 LOC102724034 - uncharacterized LOC102724034 ncRNA 13-PTNLD9-TUMOR_peak_44665 chr6 33247874 33247981 + 4.80742 NA intron (NM_005452, intron 12 of 14).2 intron (NM_005452, intron 12 of 14).2 3010 NM_003782 8705 Hs.534375 NM_003782 HPRD:04370 B3GALT4 BETA3GALT4|GALT2|GALT4 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4 protein-coding 13-PTNLD9-TUMOR_peak_18640 chr16 16394458 16394552 + 4.80742 NA TTS (NR_036140).2 TTS (NR_036140).2 489 NR_036143 100422886 NR_036143 miRBase:MI0014216 MIR3179-2 - microRNA 3179-2 ncRNA 13-PTNLD9-TUMOR_peak_8214 chr10 104159293 104159387 + 4.80420 NA exon (NM_001261403, exon 13 of 22) exon (NM_001261403, exon 13 of 22) 3987 NM_001261403 4791 Hs.73090 NM_002502 HPRD:01239 NFKB2 CVID10|H2TF1|LYT-10|LYT10|NF-kB2|p105|p52 nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100) protein-coding 13-PTNLD9-TUMOR_peak_12127 chr12 10905746 10905929 + 4.79794 NA intron (NR_120463, intron 1 of 6) intron (NR_120463, intron 1 of 6) 3004 NR_120463 101928162 Hs.112950 NR_120463 LOC101928162 - uncharacterized LOC101928162 ncRNA 13-PTNLD9-TUMOR_peak_32094 chr21 31090922 31091016 + 4.79794 NA intron (NM_175611, intron 1 of 15) intron (NM_175611, intron 1 of 15) -29525 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_49663 chr7 151083628 151083722 + 4.79794 NA intron (NM_001284260, intron 3 of 5) intron (NM_001284260, intron 3 of 5) -22572 NR_034012 100131176 Hs.659231 NR_034012 ENSG00000243836 WDR86-AS1 - WDR86 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_37263 chr3 192641652 192641754 + 4.79794 NA Intergenic L2b|LINE|L2 -5753 NM_178496 151963 Hs.151443 NM_178496 HPRD:14092 MB21D2 C3orf59 Mab-21 domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_14120 chr12 122326943 122327084 + 4.79794 NA promoter-TSS (NM_001171993) promoter-TSS (NM_001171993) 376 NM_002813 5715 Hs.131151 NM_002813 HPRD:04394 PSMD9 Rpn4|p27 proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 protein-coding 13-PTNLD9-TUMOR_peak_39072 chr4 110910271 110910502 + 4.79794 NA intron (NM_001178130, intron 18 of 22) intron (NM_001178130, intron 18 of 22) 76346 NM_001178130 1950 Hs.419815 NM_001963 HPRD:00578 EGF HOMG4|URG epidermal growth factor protein-coding 13-PTNLD9-TUMOR_peak_17976 chr15 90945650 90945798 + 4.79794 NA intron (NM_003870, intron 2 of 37) intron (NM_003870, intron 2 of 37) 14251 NM_003870 8826 Hs.430551 NM_003870 HPRD:04541 IQGAP1 HUMORFA01|SAR1|p195 IQ motif containing GTPase activating protein 1 protein-coding 13-PTNLD9-TUMOR_peak_10837 chr11 86270479 86270671 + 4.79794 NA intron (NM_001014811, intron 2 of 13) intron (NM_001014811, intron 2 of 13) 112665 NM_001014811 10873 Hs.199743 NM_006680 HPRD:06862 ME3 NADP-ME malic enzyme 3, NADP(+)-dependent, mitochondrial protein-coding 13-PTNLD9-TUMOR_peak_4246 chr1 165169488 165169688 + 4.79794 NA Intergenic Intergenic 155890 NM_001174069 4009 Hs.667312 NM_177398 HPRD:02623 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1, alpha protein-coding 13-PTNLD9-TUMOR_peak_12096 chr12 9067489 9067583 + 4.79794 NA intron (NM_004426, intron 1 of 14) intron (NM_004426, intron 1 of 14) 220 NM_004426 1911 Hs.744902 NM_004426 HPRD:16009 PHC1 EDR1|HPH1|MCPH11|RAE28 polyhomeotic homolog 1 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_20908 chr17 34891066 34891218 + 4.79794 NA promoter-TSS (NM_178517) promoter-TSS (NM_178517) 163 NM_025109 80179 Hs.302051 NM_025109 HPRD:10107 MYO19 MYOHD1 myosin XIX protein-coding 13-PTNLD9-TUMOR_peak_16494 chr14 94941135 94941273 + 4.79794 NA intron (NM_001284276, intron 1 of 5) intron (NM_001284276, intron 1 of 5) 1466 NM_001284275 327657 Hs.317970 NM_175739 HPRD:11546 SERPINA9 GCET1|SERPINA11|SERPINA11b serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 9 protein-coding 13-PTNLD9-TUMOR_peak_27859 chr2 102176256 102176409 + 4.79794 NA Intergenic MER2|DNA|TcMar-Tigger -85167 NM_001145664 731220 Hs.662488 NM_207403 ENSG00000196460 RFX8 - RFX family member 8, lacking RFX DNA binding domain protein-coding 13-PTNLD9-TUMOR_peak_36933 chr3 183210766 183210870 + 4.79794 NA intron (NM_130446, intron 5 of 6) intron (NM_130446, intron 5 of 6) 45379 NR_038301 100505687 Hs.551751 NR_038301 ENSG00000240024 LINC00888 - long intergenic non-protein coding RNA 888 ncRNA 13-PTNLD9-TUMOR_peak_29773 chr2 216614386 216614640 + 4.79794 NA intron (NR_037195, intron 2 of 9) intron (NR_037195, intron 2 of 9) 93746 NR_037195 646324 Hs.655713 NR_037195 ENSG00000235770 LINC00607 - long intergenic non-protein coding RNA 607 ncRNA 13-PTNLD9-TUMOR_peak_14355 chr12 133199244 133199402 + 4.79794 NA TTS (NM_174873) TTS (NM_174873) 3957 NM_001282165 22953 Hs.258580 NM_012226 HPRD:15984 P2RX2 DFNA41|P2X2 purinergic receptor P2X, ligand-gated ion channel, 2 protein-coding 13-PTNLD9-TUMOR_peak_16206 chr14 71597492 71597670 + 4.79794 NA Intergenic MER41B|LTR|ERV1 223459 NM_014982 22990 Hs.446559 NM_014982 HPRD:10139 PCNX PCNXL1|pecanex pecanex homolog (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_11671 chr11 130499225 130499348 + 4.79794 NA Intergenic Intergenic -37344 NR_107019 102466873 NR_107019 MIR8052 hsa-mir-8052 microRNA 8052 ncRNA 13-PTNLD9-TUMOR_peak_1817 chr1 53881029 53881305 + 4.79794 NA Intergenic Intergenic 24526 NR_002314 163742 Hs.99394 NR_002314 ENSG00000236253 SLC25A3P1 - solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_25268 chr19 48366807 48366901 + 4.79794 NA Intergenic Intergenic 22800 NM_003167 6822 Hs.515835 NM_003167 HPRD:00502 SULT2A1 DHEA-ST|DHEAS|HST|ST2|ST2A1|ST2A3|STD|hSTa sulfotransferase family, cytosolic, 2A, dehydroepiandrosterone (DHEA)-preferring, member 1 protein-coding 13-PTNLD9-TUMOR_peak_22258 chr17 79229685 79229830 + 4.79794 NA intron (NM_138570, intron 11 of 13) AluSz|SINE|Alu 16646 NM_001086521 284184 Hs.356545 NM_001086521 ENSG00000224877 C17orf89 - chromosome 17 open reading frame 89 protein-coding 13-PTNLD9-TUMOR_peak_21619 chr17 56468977 56469080 + 4.79794 NA intron (NM_017763, intron 2 of 9) intron (NM_017763, intron 2 of 9) 25903 NM_017763 54894 Hs.584916 NM_017763 HPRD:07896 RNF43 RNF124|URCC ring finger protein 43 protein-coding 13-PTNLD9-TUMOR_peak_55103 chr9 141128547 141128652 + 4.79192 NA intron (NM_001145249, intron 6 of 6) intron (NM_001145249, intron 6 of 6) 21962 NM_001145249 100132403 Hs.741123 NM_001145249 FAM157B - family with sequence similarity 157, member B protein-coding 13-PTNLD9-TUMOR_peak_11839 chr12 3107626 3107748 + 4.79067 NA intron (NM_201441, intron 3 of 11) intron (NM_201441, intron 3 of 11) 38939 NM_201443 7004 Hs.94865 NM_003213 HPRD:03421 TEAD4 EFTR-2|RTEF1|TCF13L1|TEF-3|TEF3|TEFR-1|hRTEF-1B TEA domain family member 4 protein-coding 13-PTNLD9-TUMOR_peak_33755 chr3 10968699 10968868 + 4.79067 NA intron (NM_014229, intron 9 of 13) intron (NM_014229, intron 9 of 13) -65637 NM_003042 6529 Hs.443874 NM_003042 HPRD:00664 SLC6A1 GABATHG|GABATR|GAT1 solute carrier family 6 (neurotransmitter transporter), member 1 protein-coding 13-PTNLD9-TUMOR_peak_19847 chr16 79908407 79908601 + 4.79067 NA Intergenic Intergenic 79358 NR_104661 101928248 Hs.659802 NR_104660 LOC101928248 - uncharacterized LOC101928248 ncRNA 13-PTNLD9-TUMOR_peak_55787 chrX 47050119 47050232 + 4.79067 NA promoter-TSS (NM_153280) promoter-TSS (NM_153280) -24 NM_153280 7317 Hs.533273 NM_003334 HPRD:02440 UBA1 A1S9|A1S9T|A1ST|AMCX1|CFAP124|GXP1|POC20|SMAX2|UBA1A|UBE1|UBE1X ubiquitin-like modifier activating enzyme 1 protein-coding 13-PTNLD9-TUMOR_peak_5757 chr1 229300900 229300994 + 4.79067 NA Intergenic Intergenic -105862 NM_001271998 5867 Hs.296169 NM_004578 HPRD:01541 RAB4A HRES-1|HRES-1/RAB4|HRES1|RAB4 RAB4A, member RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_12839 chr12 52836428 52836794 + 4.78844 NA Intergenic Intergenic -8501 NM_004693 9119 Hs.697046 NM_004693 HPRD:11057 KRT75 K6HF|KB18|PFB keratin 75 protein-coding 13-PTNLD9-TUMOR_peak_24455 chr19 19431851 19431960 + 4.78844 NA promoter-TSS (NM_172231) promoter-TSS (NM_172231) 275 NM_015329 23383 Hs.654939 NM_015329 HPRD:11117 MAU2 KIAA0892|MAU2L|SCC4|mau-2 MAU2 sister chromatid cohesion factor protein-coding 13-PTNLD9-TUMOR_peak_44704 chr6 33679215 33679309 + 4.78827 NA intron (NM_032340, intron 1 of 3) CpG 266 NM_032340 84300 Hs.745020 NM_032340 HPRD:12847 UQCC2 C6orf125|Cbp6|M19|MNF1|bA6B20.2 ubiquinol-cytochrome c reductase complex assembly factor 2 protein-coding 13-PTNLD9-TUMOR_peak_15234 chr14 20773898 20774017 + 4.78827 NA intron (NM_138376, intron 1 of 9) intron (NM_138376, intron 1 of 9) 196 NM_138376 91875 Hs.98553 NM_138376 TTC5 Strap tetratricopeptide repeat domain 5 protein-coding 13-PTNLD9-TUMOR_peak_1881 chr1 55473470 55473569 + 4.78827 NA intron (NM_057176, intron 3 of 3) intron (NM_057176, intron 3 of 3) 8902 NM_057176 7809 Hs.151291 NM_057176 BSND BART|DFNB73 barttin CLCNK-type chloride channel accessory beta subunit protein-coding 13-PTNLD9-TUMOR_peak_24320 chr19 17459685 17459858 + 4.78827 NA Intergenic Intergenic 11445 NM_133644 84705 Hs.334885 NM_032620 HPRD:12255 GTPBP3 GTPBG3|MSS1|MTGP1|THDF1 GTP binding protein 3 (mitochondrial) protein-coding 13-PTNLD9-TUMOR_peak_13456 chr12 89918491 89918613 + 4.78827 NA promoter-TSS (NM_003774) promoter-TSS (NM_003774) 31 NM_003774 8693 Hs.25130 NM_003774 HPRD:09152 GALNT4 GALNAC-T4|GALNACT4 polypeptide N-acetylgalactosaminyltransferase 4 protein-coding 13-PTNLD9-TUMOR_peak_24237 chr19 15695589 15695689 + 4.78827 NA Intergenic Intergenic -30390 NM_007253 11283 Hs.268554 NM_007253 CYP4F8 CPF8|CYPIVF8 cytochrome P450, family 4, subfamily F, polypeptide 8 protein-coding 13-PTNLD9-TUMOR_peak_8320 chr10 111985954 111986099 + 4.78827 NA exon (NM_005962, exon 1 of 6) exon (NM_005962, exon 1 of 6) 264 NM_005962 4601 Hs.602078 NM_005962 HPRD:02486 MXI1 MAD2|MXD2|MXI|bHLHc11 MAX interactor 1, dimerization protein protein-coding 13-PTNLD9-TUMOR_peak_10743 chr11 78512268 78512437 + 4.78827 NA intron (NM_001098816, intron 15 of 33) (CCA)n|Simple_repeat|Simple_repeat -226443 NM_024678 79731 Hs.503389 NM_024678 HPRD:08026 NARS2 SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial (putative) protein-coding 13-PTNLD9-TUMOR_peak_25540 chr19 52800088 52800182 + 4.78827 NA promoter-TSS (NM_001297625) promoter-TSS (NM_001297625) -287 NM_001297625 147657 Hs.729317 NM_144684 HPRD:15799 ZNF480 - zinc finger protein 480 protein-coding 13-PTNLD9-TUMOR_peak_26755 chr2 44518453 44518570 + 4.78827 NA intron (NM_000341, intron 4 of 9) intron (NM_000341, intron 4 of 9) 15914 NM_000341 6519 Hs.112916 NM_000341 SLC3A1 ATR1|CSNU1|D2H|NBAT|RBAT solute carrier family 3 (amino acid transporter heavy chain), member 1 protein-coding 13-PTNLD9-TUMOR_peak_31109 chr20 42231884 42231992 + 4.78827 NA intron (NM_016004, intron 3 of 13) intron (NM_016004, intron 3 of 13) 12359 NM_016004 51098 Hs.444332 NM_016004 HPRD:12789 IFT52 C20orf9|CGI-53|NGD2|NGD5|dJ1028D15.1 intraflagellar transport 52 protein-coding 13-PTNLD9-TUMOR_peak_43601 chr6 4809927 4810118 + 4.78827 NA intron (NM_004824, intron 1 of 6) intron (NM_004824, intron 1 of 6) -26310 NM_001143970 9425 Hs.269092 NM_004824 HPRD:04803 CDYL CDYL1 chromodomain protein, Y-like protein-coding 13-PTNLD9-TUMOR_peak_50543 chr8 30601675 30601769 + 4.78827 NA promoter-TSS (NM_001282199) promoter-TSS (NM_001282199) 40 NM_001282189 7993 Hs.153678 NM_005671 UBXN8 D8S2298E|REP8|UBXD6 UBX domain protein 8 protein-coding 13-PTNLD9-TUMOR_peak_51807 chr8 123799590 123799770 + 4.78827 NA intron (NM_014943, intron 1 of 3) intron (NM_014943, intron 1 of 3) 5779 NM_014943 22882 Hs.377090 NM_014943 HPRD:16458 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 13-PTNLD9-TUMOR_peak_30335 chr20 4018673 4018999 + 4.78827 NA Intergenic Intergenic -22620 NM_001134338 11237 Hs.589884 NM_007219 HPRD:10198 RNF24 G1L ring finger protein 24 protein-coding 13-PTNLD9-TUMOR_peak_54485 chr9 115873496 115873610 + 4.78827 NA intron (NR_024376, intron 1 of 2) CpG 404 NR_024376 100128385 Hs.99052 NR_024376 ENSG00000225684 FAM225B C9orf110|LINC00256B|NCRNA00256B family with sequence similarity 225, member B (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_26177 chr2 14928984 14929105 + 4.78827 NA Intergenic L1PA3|LINE|L1 153829 NM_001291410 653602 Hs.657296 NM_001291410 LOC653602 - uncharacterized LOC653602 protein-coding 13-PTNLD9-TUMOR_peak_35279 chr3 107899230 107899324 + 4.78827 NA intron (NM_018010, intron 6 of 10) intron (NM_018010, intron 6 of 10) 42140 NM_018010 55081 Hs.412196 NM_018010 HPRD:09430 IFT57 ESRRBL1|HIPPI|MHS4R2 intraflagellar transport 57 protein-coding 13-PTNLD9-TUMOR_peak_21199 chr17 43189304 43189454 + 4.78376 NA 3' UTR (NM_133373, exon 15 of 15) 3' UTR (NM_133373, exon 15 of 15) 2422 NR_106842 102465470 NR_106842 MIR6784 hsa-mir-6784 microRNA 6784 ncRNA 13-PTNLD9-TUMOR_peak_13809 chr12 110436880 110437004 + 4.78376 NA promoter-TSS (NM_033121) promoter-TSS (NM_033121) -293 NM_033121 88455 Hs.528703 NM_033121 HPRD:12458 ANKRD13A ANKRD13|NY-REN-25 ankyrin repeat domain 13A protein-coding 13-PTNLD9-TUMOR_peak_45217 chr6 46893793 46893908 + 4.78376 NA intron (NM_015234, intron 1 of 20) intron (NM_015234, intron 1 of 20) -4136 NM_001098518 221395 Hs.362806 NM_015234 HPRD:11010 GPR116 KPG_001 G protein-coupled receptor 116 protein-coding 13-PTNLD9-TUMOR_peak_17799 chr15 82760527 82760673 + 4.78216 NA intron (NM_001164465, intron 8 of 9) intron (NM_001164465, intron 8 of 9) 37612 NM_001291420 440295 Hs.498322 NM_198181 HPRD:11262 GOLGA6L9 GOLGA6L20 golgin A6 family-like 9 protein-coding 13-PTNLD9-TUMOR_peak_17822 chr15 83137113 83137259 + 4.78216 NA intron (NR_111962, intron 7 of 10) intron (NR_111962, intron 7 of 10) 38476 NM_198181 440295 Hs.498322 NM_198181 HPRD:11262 GOLGA6L9 GOLGA6L20 golgin A6 family-like 9 protein-coding 13-PTNLD9-TUMOR_peak_41695 chr5 108084892 108084986 + 4.78216 NA intron (NM_005246, intron 1 of 19) CpG 1416 NM_005246 2241 Hs.221472 NM_005246 FER FerT|PPP1R74|Pe1Fe10|Pe1Fe13|Pe1Fe3|Pe1Fe6|TYK3 fer (fps/fes related) tyrosine kinase protein-coding 13-PTNLD9-TUMOR_peak_52625 chr9 2017511 2017708 + 4.77783 NA intron (NM_001289397, intron 1 of 32) CpG 2390 NM_139045 6595 Hs.298990 NM_003070 HPRD:02483 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 13-PTNLD9-TUMOR_peak_2140 chr1 68215474 68215690 + 4.77462 NA intron (NM_018841, intron 2 of 3) intron (NM_018841, intron 2 of 3) 64722 NM_001924 1647 Hs.80409 NM_001924 HPRD:00528 GADD45A DDIT1|GADD45 growth arrest and DNA-damage-inducible, alpha protein-coding 13-PTNLD9-TUMOR_peak_37674 chr4 3659715 3659835 + 4.77462 NA Intergenic Intergenic 19807 NR_034136 100133461 Hs.554274 NR_034136 ENSG00000250632 LOC100133461 - uncharacterized LOC100133461 ncRNA 13-PTNLD9-TUMOR_peak_25431 chr19 50629781 50629952 + 4.77243 NA Intergenic AluYa5|SINE|Alu 1913 NR_024223 100169952 Hs.723094 NR_024223 SNAR-A5 - small ILF3/NF90-associated RNA A5 snRNA 13-PTNLD9-TUMOR_peak_24948 chr19 39902579 39902674 + 4.76538 NA Intergenic Intergenic -1124 NM_022835 64857 Hs.631574 NM_022835 HPRD:15148 PLEKHG2 ARHGEF42|CLG pleckstrin homology domain containing, family G (with RhoGef domain) member 2 protein-coding 13-PTNLD9-TUMOR_peak_41566 chr5 95998984 95999158 + 4.76509 NA intron (NM_001042440, intron 1 of 29) CpG 1210 NM_001042440 831 Hs.436186 NM_001750 HPRD:00233 CAST BS-17 calpastatin protein-coding 13-PTNLD9-TUMOR_peak_5423 chr1 220267632 220267879 + 4.76453 NA exon (NM_018060, exon 1 of 23) exon (NM_018060, exon 1 of 23) 300 NM_018060 55699 Hs.262823 NM_018060 HPRD:13334 IARS2 ILERS isoleucyl-tRNA synthetase 2, mitochondrial protein-coding 13-PTNLD9-TUMOR_peak_54357 chr9 110517616 110517849 + 4.76453 NA Intergenic Charlie13a|DNA|hAT-Charlie -265685 NM_004235 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel-like factor 4 (gut) protein-coding 13-PTNLD9-TUMOR_peak_2786 chr1 110319640 110319762 + 4.76453 NA Intergenic Intergenic -13057 NM_024526 79574 Hs.485352 NM_024526 HPRD:13277 EPS8L3 EPS8R3 EPS8-like 3 protein-coding 13-PTNLD9-TUMOR_peak_40863 chr5 53939757 53939854 + 4.76453 NA Intergenic Intergenic 59347 NR_104659 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 13-PTNLD9-TUMOR_peak_13208 chr12 66583028 66583125 + 4.76453 NA promoter-TSS (NM_007199) promoter-TSS (NM_007199) 98 NM_007199 11213 Hs.369265 NM_007199 HPRD:05123 IRAK3 ASRT5|IRAKM interleukin-1 receptor-associated kinase 3 protein-coding 13-PTNLD9-TUMOR_peak_16689 chr14 105671006 105671170 + 4.76453 NA Intergenic Intergenic -23428 NM_177533 256281 Hs.526432 NM_177533 HPRD:14847 NUDT14 UGPP|UGPPase nudix (nucleoside diphosphate linked moiety X)-type motif 14 protein-coding 13-PTNLD9-TUMOR_peak_23887 chr19 9394348 9394465 + 4.76453 NA Intergenic LTR12C|LTR|ERV1 21389 NM_198535 374879 Hs.633842 NM_198535 ZNF699 hang zinc finger protein 699 protein-coding 13-PTNLD9-TUMOR_peak_2884 chr1 113217442 113217632 + 4.76453 NA exon (NM_001130079, exon 2 of 21) exon (NM_001130079, exon 2 of 21) 442 NM_001130079 4343 Hs.514941 NM_020963 HPRD:14732 MOV10 fSAP113|gb110 Mov10 RISC complex RNA helicase protein-coding 13-PTNLD9-TUMOR_peak_53127 chr9 35756991 35757171 + 4.76453 NA Intergenic CpG -2807 NM_001044264 692094 Hs.571601 NM_001044264 ENSG00000215183 MSMP PSMP microseminoprotein, prostate associated protein-coding 13-PTNLD9-TUMOR_peak_17585 chr15 71443455 71443585 + 4.76422 NA intron (NM_024817, intron 1 of 16) intron (NM_024817, intron 1 of 16) 9732 NM_024817 79875 Hs.387057 NM_024817 HPRD:07835 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin, type I, domain containing 4 protein-coding 13-PTNLD9-TUMOR_peak_4938 chr1 201252394 201252640 + 4.76422 NA promoter-TSS (NM_000299) promoter-TSS (NM_000299) -63 NM_001005337 5317 Hs.497350 NM_000299 HPRD:03579 PKP1 B6P plakophilin 1 protein-coding 13-PTNLD9-TUMOR_peak_45029 chr6 42283758 42283999 + 4.76422 NA intron (NM_033502, intron 3 of 17) intron (NM_033502, intron 3 of 17) -98245 NM_018141 55173 Hs.380887 NM_018141 HPRD:14775 MRPS10 MRP-S10|PNAS-122 mitochondrial ribosomal protein S10 protein-coding 13-PTNLD9-TUMOR_peak_6925 chr10 35032948 35033051 + 4.76422 NA intron (NM_001184791, intron 1 of 20) intron (NM_001184791, intron 1 of 20) 71254 NM_001184791 56288 Hs.131489 NM_019619 HPRD:05994 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 13-PTNLD9-TUMOR_peak_42882 chr5 162123329 162123426 + 4.76422 NA Intergenic L1PA4|LINE|L1 628729 NM_198904 2566 Hs.7195 NM_000816 HPRD:00663 GABRG2 CAE2|ECA2|GEFSP3 gamma-aminobutyric acid (GABA) A receptor, gamma 2 protein-coding 13-PTNLD9-TUMOR_peak_51285 chr8 91375025 91375120 + 4.76422 NA intron (NR_051989, intron 3 of 3) AluY|SINE|Alu 141356 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 13-PTNLD9-TUMOR_peak_12129 chr12 11094973 11095072 + 4.76422 NA intron (NR_037918, intron 4 of 9) L1PBa1|LINE|L1 -3216 NM_023922 50840 Hs.679406 NM_023922 TAS2R14 T2R14|TRB1 taste receptor, type 2, member 14 protein-coding 13-PTNLD9-TUMOR_peak_29222 chr2 179228005 179228209 + 4.76422 NA intron (NM_001201482, intron 13 of 23) intron (NM_001201482, intron 13 of 23) -18698 NR_031666 100302152 NR_031666 MIR548N MIRN548N|hsa-mir-548n microRNA 548n ncRNA 13-PTNLD9-TUMOR_peak_39952 chr4 184183726 184183826 + 4.76422 NA intron (NM_024949, intron 11 of 22) intron (NM_024949, intron 11 of 22) 58151 NM_001111319 53842 Hs.333179 NM_001111319 ENSG00000177300 CLDN22 CLDN21 claudin 22 protein-coding 13-PTNLD9-TUMOR_peak_2734 chr1 109359127 109359221 + 4.76422 NA intron (NM_152763, intron 15 of 15) intron (NM_152763, intron 15 of 15) 40552 NM_152763 254268 Hs.729441 NM_152763 HPRD:11325 AKNAD1 C1orf62 AKNA domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_19363 chr16 53899449 53899599 + 4.76422 NA intron (NM_001080432, intron 4 of 8) L2|LINE|L2 161649 NM_001080432 79068 Hs.528833 NM_001080432 FTO ALKBH9 fat mass and obesity associated protein-coding 13-PTNLD9-TUMOR_peak_36188 chr3 141050674 141050771 + 4.76422 NA intron (NM_001080412, intron 1 of 7) intron (NM_001080412, intron 1 of 7) 7667 NM_001080412 253461 Hs.518301 NM_152535 ENSG00000177311 ZBTB38 CIBZ|PPP1R171|ZNF921 zinc finger and BTB domain containing 38 protein-coding 13-PTNLD9-TUMOR_peak_40687 chr5 39787790 39787965 + 4.76422 NA Intergenic L1PA2|LINE|L1 -264516 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 13-PTNLD9-TUMOR_peak_29317 chr2 188479567 188479751 + 4.76422 NA Intergenic Intergenic -60440 NM_006287 7035 Hs.516578 NM_006287 HPRD:01064 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) protein-coding 13-PTNLD9-TUMOR_peak_44707 chr6 33719085 33719200 + 4.76422 NA Intergenic Intergenic -4380 NM_001142883 117283 Hs.17253 NM_054111 HPRD:07381 IP6K3 IHPK3|INSP6K3 inositol hexakisphosphate kinase 3 protein-coding 13-PTNLD9-TUMOR_peak_14444 chr13 25154628 25154722 + 4.76422 NA non-coding (NR_002815, exon 1 of 9) non-coding (NR_002815, exon 1 of 9) 329 NR_002815 374491 Hs.406779 NR_002815 TPTE2P6 - transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 6 pseudo 13-PTNLD9-TUMOR_peak_22531 chr18 8842208 8842375 + 4.76422 NA Intergenic Intergenic 124922 NM_015210 23255 Hs.707920 NM_015210 HPRD:11110 MTCL1 CCDC165|KIAA0802|SOGA2 microtubule crosslinking factor 1 protein-coding 13-PTNLD9-TUMOR_peak_27378 chr2 83282593 83282760 + 4.76422 NA Intergenic Intergenic 198749 NR_033423 1720 Hs.169235 NR_033423 ENSG00000168129 LOC1720 - dihydrofolate reductase pseudogene pseudo 13-PTNLD9-TUMOR_peak_51117 chr8 70378919 70379019 + 4.76422 NA 5' UTR (NM_001128204, exon 1 of 22) 5' UTR (NM_001128204, exon 1 of 22) 110 NM_001128204 23213 Hs.409602 NM_015170 HPRD:15450 SULF1 HSULF-1|SULF-1 sulfatase 1 protein-coding 13-PTNLD9-TUMOR_peak_6834 chr10 30723391 30723618 + 4.76394 NA intron (NM_001244134, intron 1 of 7) CpG 554 NM_005204 1326 Hs.432453 NM_005204 HPRD:01863 MAP3K8 COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT mitogen-activated protein kinase kinase kinase 8 protein-coding 13-PTNLD9-TUMOR_peak_1999 chr1 61753548 61753746 + 4.76299 NA intron (NM_001145511, intron 3 of 10) intron (NM_001145511, intron 3 of 10) -34457 NR_104180 645030 Hs.632410 NR_104180 NFIA-AS1 - NFIA antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_12202 chr12 13328614 13328731 + 4.76299 NA Intergenic Intergenic -20930 NM_001423 2012 Hs.719042 NM_001423 HPRD:11892 EMP1 CL-20|EMP-1|TMP epithelial membrane protein 1 protein-coding 13-PTNLD9-TUMOR_peak_31192 chr20 44098129 44098253 + 4.76299 NA promoter-TSS (NM_006103) promoter-TSS (NM_006103) -203 NM_006103 10406 Hs.2719 NM_006103 HPRD:11684 WFDC2 EDDM4|HE4|WAP5|dJ461P17.6 WAP four-disulfide core domain 2 protein-coding 13-PTNLD9-TUMOR_peak_33977 chr3 16672391 16672485 + 4.75902 NA Intergenic Intergenic -25432 NM_001351 1618 Hs.131179 NM_001351 HPRD:09029 DAZL DAZH|DAZL1|DAZLA|SPGYLA deleted in azoospermia-like protein-coding 13-PTNLD9-TUMOR_peak_19778 chr16 75505796 75505924 + 4.75902 NA Intergenic Intergenic -7276 NM_145254 124491 Hs.487510 NM_145254 HPRD:14027 TMEM170A TMEM170 transmembrane protein 170A protein-coding 13-PTNLD9-TUMOR_peak_4832 chr1 192944012 192944244 + 4.75902 NA Intergenic Intergenic 84395 NM_001199261 51377 Hs.145469 NM_015984 HPRD:10293 UCHL5 CGI-70|INO80R|UCH-L5|UCH37 ubiquitin carboxyl-terminal hydrolase L5 protein-coding 13-PTNLD9-TUMOR_peak_28686 chr2 149569972 149570108 + 4.75902 NA Intergenic Intergenic -62752 NM_004522 3800 Hs.435557 NM_004522 ENSG00000168280 KIF5C CDCBM2|KINN|NKHC|NKHC-2|NKHC2 kinesin family member 5C protein-coding 13-PTNLD9-TUMOR_peak_33928 chr3 15309599 15309693 + 4.75902 NA intron (NM_001018009, intron 4 of 8) intron (NM_001018009, intron 4 of 8) 13955 NR_046084 100505696 Hs.745026 NR_046084 ENSG00000224660 SH3BP5-AS1 - SH3BP5 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_11520 chr11 124932846 124933178 + 4.75902 NA promoter-TSS (NM_001145290) promoter-TSS (NM_001145290) -1 NM_001145290 219855 Hs.352661 NM_198277 SLC37A2 pp11662 solute carrier family 37 (glucose-6-phosphate transporter), member 2 protein-coding 13-PTNLD9-TUMOR_peak_23416 chr18 65930781 65930931 + 4.75902 NA Intergenic L2|LINE|L2 451497 NM_019022 54495 Hs.440534 NM_019022 HPRD:15591 TMX3 PDIA13|TXNDC10 thioredoxin-related transmembrane protein 3 protein-coding 13-PTNLD9-TUMOR_peak_38585 chr4 74975388 74975504 + 4.75902 NA Intergenic Intergenic -10449 NM_002089 2920 Hs.75765 NM_002089 HPRD:00741 CXCL2 CINC-2a|GRO2|GROb|MGSA-b|MIP-2a|MIP2|MIP2A|SCYB2 chemokine (C-X-C motif) ligand 2 protein-coding 13-PTNLD9-TUMOR_peak_38584 chr4 74974882 74975031 + 4.75902 NA Intergenic Intergenic -9959 NM_002089 2920 Hs.75765 NM_002089 HPRD:00741 CXCL2 CINC-2a|GRO2|GROb|MGSA-b|MIP-2a|MIP2|MIP2A|SCYB2 chemokine (C-X-C motif) ligand 2 protein-coding 13-PTNLD9-TUMOR_peak_32454 chr21 44361856 44361968 + 4.75902 NA Intergenic MER92B|LTR|ERV1 -32708 NM_001286258 5316 Hs.431043 NM_004571 HPRD:03653 PKNOX1 PREP1|pkonx1c PBX/knotted 1 homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_19355 chr16 53779154 53779248 + 4.75902 NA intron (NM_001080432, intron 1 of 8) intron (NM_001080432, intron 1 of 8) 41326 NM_001080432 79068 Hs.528833 NM_001080432 FTO ALKBH9 fat mass and obesity associated protein-coding 13-PTNLD9-TUMOR_peak_23295 chr18 56029601 56029763 + 4.75902 NA intron (NM_001243960, intron 17 of 28) intron (NM_001243960, intron 17 of 28) -88624 NR_029667 406906 NR_029667 miRBase:MI0000442 MIR122 MIR122A|MIRN122|MIRN122A|hsa-mir-122|miRNA122|miRNA122A microRNA 122 ncRNA 13-PTNLD9-TUMOR_peak_16162 chr14 70010452 70010625 + 4.75902 NA Intergenic Intergenic 31062 NM_001271507 56936 Hs.458319 NM_020181 CCDC177 C14orf162|PLPL coiled-coil domain containing 177 protein-coding 13-PTNLD9-TUMOR_peak_33125 chr22 31639464 31639564 + 4.75902 NA intron (NM_005569, intron 2 of 15) intron (NM_005569, intron 2 of 15) -4834 NM_001031801 3985 Hs.474596 NM_005569 HPRD:03585 LIMK2 - LIM domain kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_29953 chr2 228190268 228190362 + 4.75902 NA promoter-TSS (NR_102371) promoter-TSS (NR_102371) -435 NR_102371 654841 Hs.659982 NR_102371 ENSG00000236432 LOC654841 - uncharacterized LOC654841 ncRNA 13-PTNLD9-TUMOR_peak_11703 chr11 131561551 131561786 + 4.75902 NA intron (NM_001048209, intron 1 of 7) (CGGGG)n|Simple_repeat|Simple_repeat -150907 NR_110140 101929653 Hs.559159 NR_110140 ENSG00000237654 LOC101929653 - uncharacterized LOC101929653 ncRNA 13-PTNLD9-TUMOR_peak_26375 chr2 26987051 26987145 + 4.75902 NA promoter-TSS (NM_017877) promoter-TSS (NM_017877) -44 NM_017877 54978 Hs.1594 NM_017877 HPRD:12808 SLC35F6 ANT2BP|C2orf18|TANGO9 solute carrier family 35, member F6 protein-coding 13-PTNLD9-TUMOR_peak_24198 chr19 14630906 14631077 + 4.75413 NA Intergenic MIR|SINE|MIR -1620 NM_006145 3337 Hs.515210 NM_006145 HPRD:05198 DNAJB1 HSPF1|Hdj1|Hsp40|RSPH16B|Sis1 DnaJ (Hsp40) homolog, subfamily B, member 1 protein-coding 13-PTNLD9-TUMOR_peak_19107 chr16 32700230 32700324 + 4.75346 NA Intergenic Intergenic -12827 NR_110910 24150 Hs.592038 NM_015369 TP53TG3 P53TG3|TP53TG3A TP53 target 3 protein-coding 13-PTNLD9-TUMOR_peak_54488 chr9 115875524 115875638 + 4.75346 NA intron (NR_024366, intron 1 of 2) CpG 405 NR_024366 286333 Hs.99052 NR_024366 ENSG00000231528 FAM225A C9orf109|LINC00256A|NCRNA00256A family with sequence similarity 225, member A (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_37011 chr3 185035966 185036102 + 4.75205 NA intron (NM_001242317, intron 2 of 12) intron (NM_001242317, intron 2 of 12) 35305 NR_038322 9175 Hs.591306 NM_004721 HPRD:05372 MAP3K13 LZK|MEKK13|MLK mitogen-activated protein kinase kinase kinase 13 protein-coding 13-PTNLD9-TUMOR_peak_3606 chr1 151172730 151172825 + 4.74977 NA intron (NM_003557, intron 1 of 14) intron (NM_003557, intron 1 of 14) 1756 NM_001135638 8394 Hs.655131 NM_003557 ENSG00000143398 PIP5K1A - phosphatidylinositol-4-phosphate 5-kinase, type I, alpha protein-coding 13-PTNLD9-TUMOR_peak_7159 chr10 43903180 43903411 + 4.74977 NA promoter-TSS (NM_001098206) promoter-TSS (NM_001098206) 4 NM_001098206 3185 Hs.808 NM_004966 HPRD:03023 HNRNPF HNRPF|OK/SW-cl.23|mcs94-1 heterogeneous nuclear ribonucleoprotein F protein-coding 13-PTNLD9-TUMOR_peak_6902 chr10 33623892 33624215 + 4.74178 NA promoter-TSS (NM_001244973) promoter-TSS (NM_001244973) -220 NM_001244973 8829 Hs.131704 NM_003873 HPRD:03642 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 13-PTNLD9-TUMOR_peak_22394 chr18 36303 36442 + 4.74178 NA Intergenic L1PA3|LINE|L1 24297 NR_110795 102723376 Hs.606852 NR_110795 LOC102723376 - uncharacterized LOC102723376 ncRNA 13-PTNLD9-TUMOR_peak_9666 chr11 45758668 45758789 + 4.73918 NA Intergenic Intergenic 14870 NR_047569 100507384 Hs.259426 NR_047569 ENSG00000254519 LOC100507384 - uncharacterized LOC100507384 ncRNA 13-PTNLD9-TUMOR_peak_33809 chr3 12794430 12794562 + 4.73918 NA intron (NM_001284406, intron 1 of 11) intron (NM_001284406, intron 1 of 11) 6312 NM_001284407 55287 Hs.475502 NM_018306 HPRD:08559 TMEM40 - transmembrane protein 40 protein-coding 13-PTNLD9-TUMOR_peak_36146 chr3 139659631 139659741 + 4.73918 NA intron (NM_022131, intron 1 of 16) L2b|LINE|L2 5659 NM_022131 64084 Hs.158529 NM_022131 CLSTN2 ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma calsyntenin 2 protein-coding 13-PTNLD9-TUMOR_peak_27685 chr2 95787488 95787656 + 4.73918 NA 5' UTR (NM_031902, exon 1 of 12) 5' UTR (NM_031902, exon 1 of 12) 182 NM_031902 64969 Hs.655259 NM_031902 HPRD:10099 MRPS5 MRP-S5|S5mt mitochondrial ribosomal protein S5 protein-coding 13-PTNLD9-TUMOR_peak_21758 chr17 62207116 62207311 + 4.73918 NA intron (NM_001433, intron 1 of 21) CpG 289 NM_001433 2081 Hs.133982 NM_001433 HPRD:04943 ERN1 IRE1|IRE1P|IRE1a|hIRE1p endoplasmic reticulum to nucleus signaling 1 protein-coding 13-PTNLD9-TUMOR_peak_4281 chr1 166872596 166872701 + 4.73918 NA Intergenic MLT1J2|LTR|ERVL-MaLR -26994 NM_053053 117143 Hs.435967 NM_053053 HPRD:18114 TADA1 ADA1|HFI1|STAF42|TADA1L|hADA1 transcriptional adaptor 1 protein-coding 13-PTNLD9-TUMOR_peak_20328 chr17 4981728 4981822 + 4.73918 NA promoter-TSS (NM_153018) promoter-TSS (NM_153018) 21 NM_153018 124961 Hs.48832 NM_153018 HPRD:08705 ZFP3 ZNF752 ZFP3 zinc finger protein protein-coding 13-PTNLD9-TUMOR_peak_3983 chr1 157102478 157102608 + 4.73918 NA TTS (NM_005240) TTS (NM_005240) 4389 NR_001560 360155 Hs.491808 NR_001560 ENSG00000235700 CYCSP52 HC6|HCP2 cytochrome c, somatic pseudogene 52 pseudo 13-PTNLD9-TUMOR_peak_35080 chr3 87040032 87040494 + 4.73918 NA promoter-TSS (NM_016206) promoter-TSS (NM_016206) -6 NM_016206 389136 Hs.606507 NM_016206 HPRD:13431 VGLL3 VGL-3|VGL3 vestigial-like family member 3 protein-coding 13-PTNLD9-TUMOR_peak_18681 chr16 19393691 19394129 + 4.73918 NA Intergenic Intergenic -28147 NM_001105249 79838 Hs.115838 NM_024780 HPRD:15516 TMC5 - transmembrane channel-like 5 protein-coding 13-PTNLD9-TUMOR_peak_47027 chr7 21985101 21985286 + 4.73571 NA intron (NM_001127370, intron 1 of 10) CpG 349 NM_018719 55536 Hs.744069 NM_018719 HPRD:11481 CDCA7L JPO2|R1|RAM2 cell division cycle associated 7-like protein-coding 13-PTNLD9-TUMOR_peak_12994 chr12 56553017 56553111 + 4.73129 NA intron (NM_079423, intron 2 of 5) intron (NM_079423, intron 2 of 5) 1019 NM_079423 4637 Hs.632717 NM_021019 HPRD:17618 MYL6 ESMLC|LC17|LC17-GI|LC17-NM|LC17A|LC17B|MLC-3|MLC1SM|MLC3NM|MLC3SM myosin, light chain 6, alkali, smooth muscle and non-muscle protein-coding 13-PTNLD9-TUMOR_peak_12860 chr12 53270229 53270431 + 4.73129 NA Intergenic Intergenic -27552 NM_173352 196374 Hs.665267 NM_173352 HPRD:17171 KRT78 CK-78|K5B|K78|Kb40 keratin 78 protein-coding 13-PTNLD9-TUMOR_peak_49064 chr7 129934289 129934432 + 4.73129 NA intron (NM_016352, intron 1 of 10) intron (NM_016352, intron 1 of 10) 1386 NM_016352 51200 Hs.93764 NM_016352 HPRD:07405 CPA4 CPA3 carboxypeptidase A4 protein-coding 13-PTNLD9-TUMOR_peak_17951 chr15 90233744 90233838 + 4.73039 NA promoter-TSS (NM_020212) promoter-TSS (NM_020212) 224 NM_003847 8800 Hs.31034 NM_003847 HPRD:04843 PEX11A PEX11-ALPHA|PMP28|hsPEX11p peroxisomal biogenesis factor 11 alpha protein-coding 13-PTNLD9-TUMOR_peak_18452 chr16 9254111 9254207 + 4.73039 NA Intergenic Intergenic 68622 NM_014117 29035 Hs.221497 NM_014117 C16orf72 PRO0149 chromosome 16 open reading frame 72 protein-coding 13-PTNLD9-TUMOR_peak_26706 chr2 43245534 43245664 + 4.73039 NA Intergenic L2|LINE|L2 21083 NR_110585 102723854 Hs.570165 NR_110585 LOC102723854 - uncharacterized LOC102723854 ncRNA 13-PTNLD9-TUMOR_peak_4828 chr1 192724007 192724150 + 4.73039 NA Intergenic AluJb|SINE|Alu -54091 NM_002923 5997 Hs.78944 NM_002923 HPRD:02917 RGS2 G0S8 regulator of G-protein signaling 2 protein-coding 13-PTNLD9-TUMOR_peak_51539 chr8 106402701 106402917 + 4.73039 NA intron (NM_012082, intron 1 of 7) MER21C|LTR|ERVL 71662 NM_012082 23414 Hs.431009 NM_012082 HPRD:04737 ZFPM2 DIH3|FOG2|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 13-PTNLD9-TUMOR_peak_2302 chr1 84945153 84945328 + 4.73039 NA intron (NM_025065, intron 1 of 8) CpG 320 NM_025065 80135 Hs.481202 NM_025065 RPF1 BXDC5 ribosome production factor 1 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_21705 chr17 60630539 60630672 + 4.73039 NA intron (NM_006852, intron 8 of 21) intron (NM_006852, intron 8 of 21) 72131 NM_001284363 11011 Hs.445078 NM_006852 TLK2 HsHPK|PKU-ALPHA tousled-like kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_55510 chrX 8372659 8372780 + 4.73039 NA Intergenic Intergenic -60152 NM_001001888 425054 Hs.279737 NM_001001888 HPRD:15646 VCX3B VCX-C|VCXC variable charge, X-linked 3B protein-coding 13-PTNLD9-TUMOR_peak_25625 chr19 54523494 54523670 + 4.73039 NA Intergenic Intergenic 28040 NM_145814 59285 Hs.631560 NM_031897 HPRD:06061 CACNG6 - calcium channel, voltage-dependent, gamma subunit 6 protein-coding 13-PTNLD9-TUMOR_peak_54958 chr9 135282223 135282352 + 4.73039 NA promoter-TSS (NM_007344) promoter-TSS (NM_007344) -49 NM_001205296 7270 Hs.54780 NM_007344 HPRD:02866 TTF1 TTF-1|TTF-I transcription termination factor, RNA polymerase I protein-coding 13-PTNLD9-TUMOR_peak_30511 chr20 17728123 17728217 + 4.73039 NA Intergenic MLT1I|LTR|ERVL-MaLR 47577 NM_001014977 140836 Hs.115366 NM_178477 HPRD:12759 BANF2 BAF-L|BAF2|BAFL|C20orf179 barrier to autointegration factor 2 protein-coding 13-PTNLD9-TUMOR_peak_40448 chr5 17118855 17119042 + 4.72993 NA Intergenic Intergenic -97984 NM_001271606 10409 Hs.201641 NM_006317 HPRD:08389 BASP1 CAP-23|CAP23|NAP-22|NAP22 brain abundant, membrane attached signal protein 1 protein-coding 13-PTNLD9-TUMOR_peak_30551 chr20 19669166 19669312 + 4.72993 NA intron (NM_020689, intron 12 of 16) intron (NM_020689, intron 12 of 16) -197926 NM_001242581 54453 Hs.472270 NM_018993 HPRD:15249 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 13-PTNLD9-TUMOR_peak_6650 chr10 22518383 22518526 + 4.72993 NA Intergenic tRNA-Asn-AAC|tRNA|tRNA -19542 NM_001199938 340900 Hs.450519 NM_001199938 ENSG00000223601 EBLN1 EBLN-1 endogenous Bornavirus-like nucleoprotein 1 protein-coding 13-PTNLD9-TUMOR_peak_30152 chr2 240143863 240143987 + 4.72993 NA intron (NM_006037, intron 3 of 26) intron (NM_006037, intron 3 of 26) -26772 NR_026664 85009 Hs.744565 NM_032923 MGC16025 - uncharacterized LOC85009 ncRNA 13-PTNLD9-TUMOR_peak_53047 chr9 33523666 33524026 + 4.72993 NA promoter-TSS (NM_001244752) promoter-TSS (NM_001244752) -565 NM_001244752 441459 Hs.493710 NM_001013728 HPRD:18466 ANKRD18B bA255A11.3|bA255A11.5 ankyrin repeat domain 18B protein-coding 13-PTNLD9-TUMOR_peak_6272 chr10 1507994 1508124 + 4.72993 NA intron (NM_018702, intron 1 of 9) LTR43|LTR|ERV1 -60766 NR_033387 642394 Hs.568831 NM_001098830 ENSG00000205696 ADARB2-AS1 C10orf109|NCRNA00168|bA466B20.1 ADARB2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_40887 chr5 54929415 54929548 + 4.72993 NA intron (NM_001258286, intron 12 of 13) intron (NM_001258286, intron 12 of 13) 59400 NR_047649 153129 Hs.745105 NM_173514 HPRD:08817 SLC38A9 - solute carrier family 38, member 9 protein-coding 13-PTNLD9-TUMOR_peak_30845 chr20 33413071 33413226 + 4.72993 NA intron (NM_001242539, intron 1 of 13) CpG 285 NM_001242539 23054 Hs.368971 NM_014071 HPRD:05599 NCOA6 AIB3|ASC2|NRC|PRIP|RAP250|TRBP nuclear receptor coactivator 6 protein-coding 13-PTNLD9-TUMOR_peak_581 chr1 19292401 19292518 + 4.72993 NA Intergenic Intergenic -9633 NM_001136265 126917 Hs.466625 NM_001136265 ENSG00000169991 IFFO2 - intermediate filament family orphan 2 protein-coding 13-PTNLD9-TUMOR_peak_1991 chr1 61508706 61508800 + 4.72993 NA Intergenic CpG -34193 NM_001145511 4774 Hs.740757 NM_005595 HPRD:09007 NFIA CTF|NF-I/A|NF1-A|NFI-A|NFI-L nuclear factor I/A protein-coding 13-PTNLD9-TUMOR_peak_51072 chr8 67351316 67351449 + 4.72993 NA intron (NM_144650, intron 1 of 13) CpG 6664 NM_144650 137872 Hs.720023 NM_144650 HPRD:12428 ADHFE1 ADH8|HOT alcohol dehydrogenase, iron containing, 1 protein-coding 13-PTNLD9-TUMOR_peak_49604 chr7 149887204 149887305 + 4.72993 NA Intergenic L1MC4|LINE|L1 112815 NM_001164459 653857 Hs.664579 NM_001164458 ENSG00000106526 ACTR3C ARP11 ARP3 actin-related protein 3 homolog C (yeast) protein-coding 13-PTNLD9-TUMOR_peak_46899 chr7 12202533 12202630 + 4.72993 NA Intergenic LFSINE_Vert|SINE|SINE -48267 NM_001134232 54664 Hs.396358 NM_018374 TMEM106B - transmembrane protein 106B protein-coding 13-PTNLD9-TUMOR_peak_30739 chr20 30272654 30272748 + 4.72993 NA intron (NM_001191, intron 2 of 2) intron (NM_001191, intron 2 of 2) 37955 NM_138578 598 Hs.516966 NM_001191 HPRD:02497 BCL2L1 BCL-XL/S|BCL2L|BCLX|BCLXL|BCLXS|Bcl-X|PPP1R52|bcl-xL|bcl-xS BCL2-like 1 protein-coding 13-PTNLD9-TUMOR_peak_53559 chr9 71994314 71994421 + 4.72993 NA intron (NM_004816, intron 6 of 10) intron (NM_004816, intron 6 of 10) 50126 NM_004816 9413 Hs.118003 NM_004816 HPRD:16255 FAM189A2 C9orf61|X123 family with sequence similarity 189, member A2 protein-coding 13-PTNLD9-TUMOR_peak_27267 chr2 73298129 73298294 + 4.72966 NA intron (NM_144579, intron 1 of 13) CpG 754 NM_144579 94097 Hs.368171 NM_144579 HPRD:18047 SFXN5 BBG-TCC sideroflexin 5 protein-coding 13-PTNLD9-TUMOR_peak_38121 chr4 25655777 25655945 + 4.72966 NA Intergenic Intergenic -1574 NM_001177998 10568 Hs.479372 NM_006424 HPRD:07251 SLC34A2 NAPI-3B|NAPI-IIb|NPTIIb solute carrier family 34 (type II sodium/phosphate contransporter), member 2 protein-coding 13-PTNLD9-TUMOR_peak_35981 chr3 133381203 133381327 + 4.72966 NA promoter-TSS (NM_007027) promoter-TSS (NM_007027) -528 NM_007027 11073 Hs.593379 NM_007027 HPRD:09678 TOPBP1 TOP2BP1 topoisomerase (DNA) II binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_51091 chr8 67974553 67974895 + 4.72169 NA promoter-TSS (NM_006837) promoter-TSS (NM_006837) -162 NM_006837 10987 Hs.491912 NM_006837 HPRD:06888 COPS5 CSN5|JAB1|MOV-34|SGN5 COP9 signalosome subunit 5 protein-coding 13-PTNLD9-TUMOR_peak_28262 chr2 121101095 121101227 + 4.72169 NA Intergenic CpG -2558 NM_002193 3625 Hs.1735 NM_002193 HPRD:00934 INHBB - inhibin, beta B protein-coding 13-PTNLD9-TUMOR_peak_28025 chr2 111141343 111141492 + 4.71874 NA non-coding (NR_046111, exon 2 of 3).2 non-coding (NR_046111, exon 2 of 3).2 685 NR_046110 440894 Hs.516403 NR_046110 ENSG00000204588 LINC01123 - long intergenic non-protein coding RNA 1123 ncRNA 13-PTNLD9-TUMOR_peak_38746 chr4 83931828 83931950 + 4.71874 NA promoter-TSS (NM_001288997) promoter-TSS (NM_001288997) 98 NM_001288996 132660 Hs.96952 NM_194282 HPRD:13218 LIN54 CXCDC1|JC8.6|MIP120 lin-54 DREAM MuvB core complex component protein-coding 13-PTNLD9-TUMOR_peak_5937 chr1 235097877 235098126 + 4.71874 NA Intergenic Intergenic 193251 NR_002956 677802 Hs.744743 NR_002956 SNORA14B ACA14b small nucleolar RNA, H/ACA box 14B snoRNA 13-PTNLD9-TUMOR_peak_24747 chr19 35636200 35636294 + 4.71392 NA intron (NM_022006, intron 1 of 5) intron (NM_022006, intron 1 of 5) 2093 NM_022006 53822 Hs.134729 NM_022006 HPRD:09457 FXYD7 - FXYD domain containing ion transport regulator 7 protein-coding 13-PTNLD9-TUMOR_peak_39105 chr4 113627055 113627355 + 4.71392 NA Intergenic CpG -57492 NR_029857 442894 NR_029857 miRBase:MI0000772 MIR302B MIRN302B microRNA 302b ncRNA 13-PTNLD9-TUMOR_peak_31720 chr20 57556369 57556479 + 4.71392 NA exon (NM_198976, exon 1 of 15) exon (NM_198976, exon 1 of 15) 161 NM_198976 51497 Hs.517148 NM_016397 HPRD:16096 NELFCD NELF-C|NELF-D|TH1|TH1L negative elongation factor complex member C/D protein-coding 13-PTNLD9-TUMOR_peak_29546 chr2 202092094 202092197 + 4.71392 NA intron (NM_001206542, intron 7 of 7) intron (NM_001206542, intron 7 of 7) -6021 NM_033355 841 Hs.599762 NM_001228 HPRD:03459 CASP8 ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5 caspase 8, apoptosis-related cysteine peptidase protein-coding 13-PTNLD9-TUMOR_peak_11196 chr11 111637061 111637191 + 4.71392 NA promoter-TSS (NM_001177562) promoter-TSS (NM_001177562) 43 NM_001177562 5519 Hs.269128 NM_002716 HPRD:04384 PPP2R1B PP2A-Abeta|PR65B protein phosphatase 2, regulatory subunit A, beta protein-coding 13-PTNLD9-TUMOR_peak_9140 chr11 13484013 13484119 + 4.71392 NA intron (NM_032320, intron 1 of 8) intron (NM_032320, intron 1 of 8) 778 NM_032320 84280 Hs.332382 NM_032320 HPRD:17045 BTBD10 GMRP-1|GMRP1 BTB (POZ) domain containing 10 protein-coding 13-PTNLD9-TUMOR_peak_3782 chr1 154405844 154406055 + 4.71392 NA intron (NM_181359, intron 3 of 8) intron (NM_181359, intron 3 of 8) 28280 NM_181359 3570 Hs.135087 NM_000565 HPRD:01000 IL6R CD126|IL-6R-1|IL-6RA|IL6Q|IL6RA|IL6RQ|gp80 interleukin 6 receptor protein-coding 13-PTNLD9-TUMOR_peak_49892 chr7 158815059 158815199 + 4.71392 NA intron (NR_024394, intron 4 of 4) intron (NR_024394, intron 4 of 4) 14084 NR_024394 154822 Hs.544783 NM_198345 ENSG00000231419 LINC00689 - long intergenic non-protein coding RNA 689 ncRNA 13-PTNLD9-TUMOR_peak_4175 chr1 162161938 162162103 + 4.71392 NA intron (NM_001164757, intron 2 of 9) MER5A|DNA|hAT-Charlie 35123 NR_039798 100616386 NR_039798 MIR4654 - microRNA 4654 ncRNA 13-PTNLD9-TUMOR_peak_53725 chr9 80912416 80912631 + 4.70613 NA intron (NM_058179, intron 1 of 8) CpG 532 NM_021154 29968 Hs.494261 NM_021154 HPRD:17918 PSAT1 EPIP|PSA|PSAT phosphoserine aminotransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_3517 chr1 149822126 149822270 + 4.70167 NA promoter-TSS (NM_003516) promoter-TSS (NM_003516) 142 NR_036461 337873 Hs.666643 NR_036461 ENSG00000203819 HIST2H2BC H2B/t|HIST2H2BD histone cluster 2, H2bc (pseudogene) pseudo 13-PTNLD9-TUMOR_peak_19218 chr16 46407935 46408047 + 4.70089 NA Intergenic HSATII|Satellite|Satellite 195018 NR_026556 124149 Hs.97414 NM_001004299 ANKRD26P1 - ankyrin repeat domain 26 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_4765 chr1 185285400 185285634 + 4.70088 NA intron (NM_006469, intron 1 of 14) CpG 944 NM_006469 10625 Hs.497183 NM_006469 HPRD:10004 IVNS1ABP FLARA3|HSPC068|KLHL39|ND1|NS-1|NS1-BP|NS1BP influenza virus NS1A binding protein protein-coding 13-PTNLD9-TUMOR_peak_50029 chr8 8056476 8056656 + 4.70064 NA Intergenic HERVK-int|LTR|ERVK -29526 NR_024361 286042 Hs.656318 NR_024361 ENSG00000173295 FAM86B3P - family with sequence similarity 86, member A pseudogene pseudo 13-PTNLD9-TUMOR_peak_47808 chr7 70034573 70034733 + 4.70064 NA intron (NM_001127231, intron 5 of 17) intron (NM_001127231, intron 5 of 17) -562870 NM_022479 64409 Hs.488591 NM_022479 HPRD:15655 WBSCR17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T5L Williams-Beuren syndrome chromosome region 17 protein-coding 13-PTNLD9-TUMOR_peak_47061 chr7 23361159 23361253 + 4.70064 NA intron (NM_006547, intron 10 of 14) L1PA3|LINE|L1 22266 NM_138446 115416 Hs.87385 NM_138446 MALSU1 C7orf30|mtRsfA mitochondrial assembly of ribosomal large subunit 1 protein-coding 13-PTNLD9-TUMOR_peak_23329 chr18 57288319 57288413 + 4.70064 NA intron (NM_133459, intron 2 of 10) intron (NM_133459, intron 2 of 10) 76278 NM_133459 147372 Hs.34333 NM_133459 HPRD:08703 CCBE1 - collagen and calcium binding EGF domains 1 protein-coding 13-PTNLD9-TUMOR_peak_37547 chr4 892767 892973 + 4.70064 NA intron (NM_005255, intron 5 of 27) intron (NM_005255, intron 5 of 27) 33304 NM_005255 2580 Hs.369607 NM_005255 HPRD:03631 GAK DNAJ26|DNAJC26 cyclin G associated kinase protein-coding 13-PTNLD9-TUMOR_peak_50884 chr8 48873878 48873993 + 4.70064 NA intron (NM_182746, intron 2 of 16) intron (NM_182746, intron 2 of 16) 1172 NM_005914 4173 Hs.460184 NM_005914 HPRD:09094 MCM4 CDC21|CDC54|NKCD|NKGCD|P1-CDC21|hCdc21 minichromosome maintenance complex component 4 protein-coding 13-PTNLD9-TUMOR_peak_21647 chr17 57444542 57444687 + 4.70064 NA intron (NM_001005404, intron 2 of 4) intron (NM_001005404, intron 2 of 4) 1170 NR_039882 100616204 NR_039882 MIR4729 - microRNA 4729 ncRNA 13-PTNLD9-TUMOR_peak_34767 chr3 58147634 58147777 + 4.70064 NA intron (NM_001457, intron 42 of 45) MLT1L|LTR|ERVL-MaLR 49025 NM_004944 1776 Hs.476453 NM_004944 HPRD:03764 DNASE1L3 DHP2|DNAS1L3|LSD|SLEB16 deoxyribonuclease I-like 3 protein-coding 13-PTNLD9-TUMOR_peak_38918 chr4 96649305 96649457 + 4.70064 NA Intergenic MLT1F2|LTR|ERVL-MaLR -111858 NM_005390 5161 Hs.131361 NM_005390 HPRD:01531 PDHA2 PDHAL pyruvate dehydrogenase (lipoamide) alpha 2 protein-coding 13-PTNLD9-TUMOR_peak_37112 chr3 187412592 187412808 + 4.70064 NA Intergenic HSAT4|Satellite|centr -7454 NR_034062 100131635 Hs.434448 NR_034062 ENSG00000228804 LOC100131635 - hCG1645011-like ncRNA 13-PTNLD9-TUMOR_peak_5393 chr1 217804556 217804752 + 4.70064 NA promoter-TSS (NM_138796) promoter-TSS (NM_138796) -41 NM_138796 128153 Hs.171130 NM_138796 SPATA17 IQCH|MSRG-11|MSRG11 spermatogenesis associated 17 protein-coding 13-PTNLD9-TUMOR_peak_4842 chr1 193527719 193527814 + 4.70064 NA Intergenic Intergenic 253891 NR_125789 101929184 Hs.146728 NR_125789 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 13-PTNLD9-TUMOR_peak_16834 chr15 26273367 26273461 + 4.70064 NA intron (NR_040082, intron 2 of 4) intron (NR_040082, intron 2 of 4) -87546 NR_038851 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 13-PTNLD9-TUMOR_peak_5075 chr1 203297929 203298158 + 4.70064 NA Intergenic Intergenic 22514 NM_002023 2331 Hs.519168 NM_002023 HPRD:02591 FMOD FM|SLRR2E fibromodulin protein-coding 13-PTNLD9-TUMOR_peak_36477 chr3 155948395 155948554 + 4.70064 NA intron (NM_003471, intron 1 of 13) L2a|LINE|L2 -2802 NR_046617 100874083 Hs.603823 NR_046617 ENSG00000240596 KCNAB1-AS2 - KCNAB1 antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_41094 chr5 66478370 66478544 + 4.70064 NA 3' UTR (NM_005582, exon 3 of 3) 3' UTR (NM_005582, exon 3 of 3) 14160 NM_005582 4064 Hs.87205 NM_005582 HPRD:03749 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 13-PTNLD9-TUMOR_peak_9417 chr11 31981406 31981522 + 4.69748 NA Intergenic Intergenic 81400 NR_120527 100506675 Hs.446169 NR_120526 ENSG00000254584 LOC100506675 - uncharacterized LOC100506675 ncRNA 13-PTNLD9-TUMOR_peak_17286 chr15 51914841 51914940 + 4.69748 NA promoter-TSS (NM_001174117) promoter-TSS (NM_001174117) 77 NM_015263 23312 Hs.511386 NM_015263 HPRD:10188 DMXL2 RC3 Dmx-like 2 protein-coding 13-PTNLD9-TUMOR_peak_19379 chr16 55331088 55331309 + 4.69748 NA Intergenic MLT1K|LTR|ERVL-MaLR -27273 NM_024335 79190 Hs.369907 NM_024335 IRX6 IRX-3|IRX7|IRXB3 iroquois homeobox 6 protein-coding 13-PTNLD9-TUMOR_peak_52335 chr8 142024633 142024751 + 4.69748 NA Intergenic Intergenic -13280 NM_001199649 5747 Hs.395482 NM_005607 HPRD:02859 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_2948 chr1 115611892 115612032 + 4.69748 NA intron (NM_005725, intron 2 of 7) MLT1K|LTR|ERVL-MaLR 20159 NM_005725 10100 Hs.310458 NM_005725 HPRD:18233 TSPAN2 NET3|TSN2|TSPAN-2 tetraspanin 2 protein-coding 13-PTNLD9-TUMOR_peak_41228 chr5 71748466 71748606 + 4.69748 NA intron (NM_152625, intron 3 of 4) intron (NM_152625, intron 3 of 4) 54713 NM_152625 167465 Hs.370303 NM_152625 HPRD:18329 ZNF366 DCSCRIPT zinc finger protein 366 protein-coding 13-PTNLD9-TUMOR_peak_13211 chr12 66835821 66835934 + 4.69748 NA intron (NM_021150, intron 12 of 23) L2a|LINE|L2 139542 NM_033647 92797 Hs.505941 NM_033647 HPRD:09979 HELB hDHB helicase (DNA) B protein-coding 13-PTNLD9-TUMOR_peak_47887 chr7 73157728 73157835 + 4.69748 NA Intergenic Intergenic -4584 NM_001301058 83451 Hs.647045 NM_148912 HPRD:15658 ABHD11 WBSCR21 abhydrolase domain containing 11 protein-coding 13-PTNLD9-TUMOR_peak_11111 chr11 106820827 106820953 + 4.69748 NA intron (NM_001256424, intron 3 of 8) intron (NM_001256424, intron 3 of 8) 68281 NM_000855 2977 Hs.24321 NM_000855 HPRD:03146 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1, soluble, alpha 2 protein-coding 13-PTNLD9-TUMOR_peak_51193 chr8 81260199 81260369 + 4.69748 NA Intergenic Intergenic 106660 NR_049894 100847056 NR_049894 miRBase:MI0019316 MIR5708 - microRNA 5708 ncRNA 13-PTNLD9-TUMOR_peak_2286 chr1 83284440 83284552 + 4.69748 NA Intergenic L2a|LINE|L2 166109 NR_110632 101927498 NR_110632 ENSG00000236268 LINC01361 - long intergenic non-protein coding RNA 1361 ncRNA 13-PTNLD9-TUMOR_peak_15523 chr14 34616816 34616969 + 4.69748 NA Intergenic Intergenic -196608 NM_022073 112399 Hs.135507 NM_022073 HPRD:06972 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia-inducible factor 3 protein-coding 13-PTNLD9-TUMOR_peak_21017 chr17 38614412 38614541 + 4.69748 NA TTS (NM_001552) TTS (NM_001552) 14800 NM_001552 3487 Hs.462998 NM_001552 HPRD:00900 IGFBP4 BP-4|HT29-IGFBP|IBP4|IGFBP-4 insulin-like growth factor binding protein 4 protein-coding 13-PTNLD9-TUMOR_peak_40684 chr5 39775728 39775822 + 4.69748 NA Intergenic Intergenic 255242 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LOC101926940 - uncharacterized LOC101926940 ncRNA 13-PTNLD9-TUMOR_peak_40598 chr5 35229521 35229615 + 4.69748 NA intron (NM_000949, intron 1 of 9) intron (NM_000949, intron 1 of 9) 1123 NM_000949 5618 Hs.368587 NM_000949 HPRD:01457 PRLR HPRL|MFAB|hPRLrI prolactin receptor protein-coding 13-PTNLD9-TUMOR_peak_21821 chr17 64545991 64546162 + 4.69748 NA intron (NM_002737, intron 3 of 16) intron (NM_002737, intron 3 of 16) -133104 NR_110822 101928001 Hs.650730 NR_110822 ENSG00000264630 LOC101928001 - uncharacterized LOC101928001 ncRNA 13-PTNLD9-TUMOR_peak_5966 chr1 235561134 235561320 + 4.69748 NA intron (NM_001287802, intron 2 of 15) intron (NM_001287802, intron 2 of 15) 30552 NM_001079515 6905 Hs.744998 NM_003193 HPRD:05381 TBCE HRD|KCS|KCS1|pac2 tubulin folding cofactor E protein-coding 13-PTNLD9-TUMOR_peak_14775 chr13 51654375 51654573 + 4.69748 NA Intergenic L1PA6|LINE|L1 -14181 NR_003923 2974 Hs.411573 NM_004129 HPRD:07542 GUCY1B2 GC-SB2 guanylate cyclase 1, soluble, beta 2 (pseudogene) pseudo 13-PTNLD9-TUMOR_peak_26074 chr2 10037682 10037784 + 4.69748 NA intron (NM_005680, intron 8 of 14) intron (NM_005680, intron 8 of 14) -54059 NM_198182 29841 Hs.418493 NM_198182 HPRD:18176 GRHL1 LBP32|MGR|NH32|TFCP2L2 grainyhead-like 1 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_23496 chr18 74779784 74779932 + 4.69464 NA intron (NM_001025101, intron 2 of 8) intron (NM_001025101, intron 2 of 8) -50803 NM_001025092 4155 Hs.551713 NM_002385 HPRD:01158 MBP - myelin basic protein protein-coding 13-PTNLD9-TUMOR_peak_50306 chr8 22601855 22602003 + 4.69464 NA intron (NM_144962, intron 4 of 6) intron (NM_144962, intron 4 of 6) -51114 NM_004430 1960 Hs.534313 NM_004430 HPRD:03881 EGR3 EGR-3|PILOT early growth response 3 protein-coding 13-PTNLD9-TUMOR_peak_24063 chr19 12777516 12777610 + 4.69464 NA promoter-TSS (NM_001099737) promoter-TSS (NM_001099737) 28 NM_001173498 4125 Hs.356769 NM_000528 HPRD:02007 MAN2B1 LAMAN|MANB mannosidase, alpha, class 2B, member 1 protein-coding 13-PTNLD9-TUMOR_peak_24877 chr19 38704528 38704669 + 4.68885 NA intron (NM_001135155, intron 9 of 11) intron (NM_001135155, intron 9 of 11) 10292 NM_001289978 8193 Hs.631576 NM_004647 HPRD:03393 DPF1 BAF45b|NEUD4|neuro-d4 D4, zinc and double PHD fingers family 1 protein-coding 13-PTNLD9-TUMOR_peak_23269 chr18 55443174 55443354 + 4.68885 NA intron (NM_005603, intron 1 of 27) intron (NM_005603, intron 1 of 27) 27063 NM_005603 5205 Hs.216623 NM_005603 HPRD:03867 ATP8B1 ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1 ATPase, aminophospholipid transporter, class I, type 8B, member 1 protein-coding 13-PTNLD9-TUMOR_peak_6659 chr10 22725869 22726099 + 4.68885 NA non-coding (NR_036533, exon 1 of 1) non-coding (NR_036533, exon 1 of 1) 874 NR_036533 100499489 Hs.7444 NR_036533 LOC100499489 - uncharacterized LOC100499489 ncRNA 13-PTNLD9-TUMOR_peak_23847 chr19 8462472 8462566 + 4.68395 NA intron (NM_004218, intron 1 of 4) intron (NM_004218, intron 1 of 4) -6944 NR_038237 100507567 Hs.637720 NR_038237 ENSG00000269386 RAB11B-AS1 - RAB11B antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_19483 chr16 58534006 58534140 + 4.68395 NA promoter-TSS (NM_001242834) promoter-TSS (NM_001242834) 26 NM_001242836 65009 Hs.322430 NM_020465 HPRD:14817 NDRG4 BDM1|SMAP-8|SMAP8 NDRG family member 4 protein-coding 13-PTNLD9-TUMOR_peak_15741 chr14 51410208 51410388 + 4.68395 NA intron (NM_002863, intron 1 of 19) intron (NM_002863, intron 1 of 19) 950 NM_001163940 5836 Hs.282417 NM_002863 HPRD:01987 PYGL GSD6 phosphorylase, glycogen, liver protein-coding 13-PTNLD9-TUMOR_peak_56534 chrX 134654458 134654628 + 4.68395 NA promoter-TSS (NM_182540) promoter-TSS (NM_182540) -12 NM_182540 203522 Hs.496829 NM_182540 HPRD:06618 DDX26B - DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B protein-coding 13-PTNLD9-TUMOR_peak_45126 chr6 44018810 44018951 + 4.68068 NA Intergenic Intergenic 50543 NM_153246 221416 Hs.531926 NM_153246 HPRD:14640 C6orf223 - chromosome 6 open reading frame 223 protein-coding 13-PTNLD9-TUMOR_peak_47933 chr7 73684122 73684244 + 4.68068 NA Intergenic Intergenic -15395 NM_181471 5982 Hs.647062 NM_002914 HPRD:02675 RFC2 RFC40 replication factor C (activator 1) 2, 40kDa protein-coding 13-PTNLD9-TUMOR_peak_50580 chr8 33330922 33331021 + 4.68068 NA promoter-TSS (NM_032664) promoter-TSS (NM_032664) -307 NM_032664 84750 Hs.458713 NM_032664 ENSG00000172728 FUT10 - fucosyltransferase 10 (alpha (1,3) fucosyltransferase) protein-coding 13-PTNLD9-TUMOR_peak_37033 chr3 185542975 185543117 + 4.68068 NA promoter-TSS (NM_006548) promoter-TSS (NM_006548) -219 NM_001291869 10644 Hs.35354 NM_006548 HPRD:10507 IGF2BP2 IMP-2|IMP2|VICKZ2 insulin-like growth factor 2 mRNA binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_4067 chr1 159893542 159893705 + 4.67644 NA promoter-TSS (NM_001277224) promoter-TSS (NM_001277224) -116 NM_001277224 8407 Hs.517168 NM_003564 HPRD:06864 TAGLN2 HA1756 transgelin 2 protein-coding 13-PTNLD9-TUMOR_peak_36275 chr3 145878079 145878323 + 4.67552 NA intron (NM_000935, intron 1 of 18) intron (NM_000935, intron 1 of 18) 1081 NM_000935 5352 Hs.477866 NM_000935 HPRD:03519 PLOD2 LH2|TLH procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2 protein-coding 13-PTNLD9-TUMOR_peak_23270 chr18 55445801 55446000 + 4.67215 NA intron (NM_005603, intron 1 of 27) MLT1F2|LTR|ERVL-MaLR 24427 NM_005603 5205 Hs.216623 NM_005603 HPRD:03867 ATP8B1 ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1 ATPase, aminophospholipid transporter, class I, type 8B, member 1 protein-coding 13-PTNLD9-TUMOR_peak_37150 chr3 188406944 188407118 + 4.67215 NA intron (NM_001167671, intron 6 of 10) intron (NM_001167671, intron 6 of 10) -120577 NR_046623 100873917 Hs.674993 NR_046623 LPP-AS1 - LPP antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_34076 chr3 24000930 24001081 + 4.67215 NA intron (NR_110524, intron 3 of 8) intron (NR_110524, intron 3 of 8) 13393 NM_001145425 9975 Hs.37288 NM_005126 HPRD:03809 NR1D2 BD73|EAR-1R|RVR nuclear receptor subfamily 1, group D, member 2 protein-coding 13-PTNLD9-TUMOR_peak_36075 chr3 137762540 137762714 + 4.67215 NA Intergenic Intergenic 33621 NM_016369 51208 Hs.655324 NM_016369 HPRD:13066 CLDN18 SFTA5|SFTPJ claudin 18 protein-coding 13-PTNLD9-TUMOR_peak_29712 chr2 210126268 210126457 + 4.67215 NA Intergenic L1PA5|LINE|L1 -162409 NM_001039538 4133 Hs.368281 NM_002374 HPRD:01140 MAP2 MAP2A|MAP2B|MAP2C microtubule-associated protein 2 protein-coding 13-PTNLD9-TUMOR_peak_22995 chr18 40098360 40098521 + 4.67215 NA non-coding (NR_046455, exon 5 of 5) non-coding (NR_046455, exon 5 of 5) 331807 NR_046457 284260 Hs.652819 NR_046174 ENSG00000267586 LINC00907 - long intergenic non-protein coding RNA 907 ncRNA 13-PTNLD9-TUMOR_peak_19757 chr16 74777321 74777858 + 4.67215 NA intron (NM_024306, intron 1 of 6) intron (NM_024306, intron 1 of 6) 31140 NM_024306 79152 Hs.461329 NM_024306 HPRD:16873 FA2H FAAH|FAH1|FAXDC1|SCS7|SPG35 fatty acid 2-hydroxylase protein-coding 13-PTNLD9-TUMOR_peak_33681 chr3 9349034 9349184 + 4.67215 NA Intergenic Intergenic -55608 NM_001114092 25917 Hs.443081 NM_015453 HPRD:15507 THUMPD3 - THUMP domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_35317 chr3 111311927 111312033 + 4.66947 NA 3' UTR (NM_024508, exon 2 of 2) 3' UTR (NM_024508, exon 2 of 2) 2202 NM_024508 79413 Hs.136912 NM_024508 HPRD:15686 ZBED2 - zinc finger, BED-type containing 2 protein-coding 13-PTNLD9-TUMOR_peak_18730 chr16 21520526 21520640 + 4.66947 NA Intergenic Intergenic -6981 NR_027155 100271836 Hs.552700 NR_027155 ENSG00000180747 SMG1P3 - SMG1 pseudogene 3 pseudo 13-PTNLD9-TUMOR_peak_25229 chr19 47731626 47731883 + 4.66518 NA intron (NM_001127240, intron 1 of 3) intron (NM_001127240, intron 1 of 3) -1478 NR_036159 100422832 NR_036159 MIR3191 - microRNA 3191 ncRNA 13-PTNLD9-TUMOR_peak_33065 chr22 29740147 29740350 + 4.66411 NA intron (NM_145730, intron 11 of 20) intron (NM_145730, intron 11 of 20) -10992 NR_037426 100500833 NR_037426 MIR3653 - microRNA 3653 ncRNA 13-PTNLD9-TUMOR_peak_48342 chr7 94053224 94053478 + 4.66411 NA intron (NM_000089, intron 40 of 51) intron (NM_000089, intron 40 of 51) 29478 NM_000089 1278 Hs.489142 NM_000089 HPRD:00363 COL1A2 OI4 collagen, type I, alpha 2 protein-coding 13-PTNLD9-TUMOR_peak_5022 chr1 202182601 202182769 + 4.66411 NA promoter-TSS (NM_001017404) promoter-TSS (NM_001017404) -598 NM_001017404 59352 Hs.497402 NM_021636 HPRD:05974 LGR6 GPCR|VTS20631 leucine-rich repeat containing G protein-coupled receptor 6 protein-coding 13-PTNLD9-TUMOR_peak_48592 chr7 101022250 101022420 + 4.66411 NA intron (NM_133457, intron 1 of 12) intron (NM_133457, intron 1 of 12) 16234 NM_001278563 136227 Hs.654854 NM_133457 HPRD:16405 COL26A1 EMI6|EMID2|EMU2|SH2B collagen, type XXVI, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_49946 chr8 1771428 1771545 + 4.66411 NA promoter-TSS (NM_014629) promoter-TSS (NM_014629) -663 NM_014629 9639 Hs.98594 NM_014629 HPRD:09735 ARHGEF10 GEF10 Rho guanine nucleotide exchange factor (GEF) 10 protein-coding 13-PTNLD9-TUMOR_peak_52045 chr8 130169760 130169902 + 4.66411 NA Intergenic L1PA2|LINE|L1 83655 NR_033916 728724 Hs.49902 NR_033916 ENSG00000250400 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 13-PTNLD9-TUMOR_peak_33363 chr22 42696798 42697076 + 4.66411 NA Intergenic Intergenic 31178 NR_036498 388906 Hs.730075 NR_036498 ENSG00000182057 OGFRP1 - opioid growth factor receptor pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_30104 chr2 237624379 237624605 + 4.66411 NA Intergenic Intergenic 146112 NM_020311 57007 Hs.471751 NM_020311 HPRD:09882 ACKR3 CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1 atypical chemokine receptor 3 protein-coding 13-PTNLD9-TUMOR_peak_56278 chrX 100645869 100646077 + 4.66411 NA promoter-TSS (NM_021029) promoter-TSS (NM_021029) 95 NM_001199972 6173 Hs.432485 NM_021029 HPRD:06709 RPL36A L36A|L44L|MIG6|RPL44 ribosomal protein L36a protein-coding 13-PTNLD9-TUMOR_peak_36452 chr3 153970947 153971041 + 4.66411 NA intron (NM_001251963, intron 13 of 14) intron (NM_001251963, intron 13 of 14) 71292 NM_020865 170506 Hs.446270 NM_020865 HPRD:09918 DHX36 DDX36|G4R1|MLEL1|RHAU DEAH (Asp-Glu-Ala-His) box polypeptide 36 protein-coding 13-PTNLD9-TUMOR_peak_37912 chr4 8830998 8831099 + 4.66411 NA Intergenic L1M5|LINE|L1 42495 NM_018942 3166 Hs.104134 NM_018942 HPRD:00873 HMX1 H6|NKX5-3 H6 family homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_33976 chr3 16592408 16592623 + 4.66411 NA Intergenic Intergenic 14690 NR_103843 100996597 Hs.599432 NR_103843 ENSG00000233570 LINC00690 - long intergenic non-protein coding RNA 690 ncRNA 13-PTNLD9-TUMOR_peak_13141 chr12 64422950 64423044 + 4.66411 NA intron (NM_020762, intron 4 of 21) intron (NM_020762, intron 4 of 21) 184456 NM_020762 57522 Hs.210751 NM_020762 HPRD:09406 SRGAP1 ARHGAP13 SLIT-ROBO Rho GTPase activating protein 1 protein-coding 13-PTNLD9-TUMOR_peak_50738 chr8 42091299 42091393 + 4.66411 NA Intergenic LTR8|LTR|ERV1 -26152 NM_000930 5327 Hs.491582 NM_000930 HPRD:01419 PLAT T-PA|TPA plasminogen activator, tissue protein-coding 13-PTNLD9-TUMOR_peak_55609 chrX 19192882 19193051 + 4.66411 NA Intergenic Intergenic -52211 NM_001184837 10149 Hs.146978 NM_005756 HPRD:04040 GPR64 EDDM6|HE6|TM7LN2 G protein-coupled receptor 64 protein-coding 13-PTNLD9-TUMOR_peak_37007 chr3 184870232 184870512 + 4.66411 NA intron (NM_001025266, intron 1 of 1) CpG 430 NM_001025266 285382 Hs.380048 NM_001025266 HPRD:18774 C3orf70 - chromosome 3 open reading frame 70 protein-coding 13-PTNLD9-TUMOR_peak_11634 chr11 129706531 129706764 + 4.66411 NA intron (NM_138788, intron 1 of 5) MLT1B|LTR|ERVL-MaLR 20906 NM_138788 120224 Hs.504301 NM_138788 HPRD:14020 TMEM45B - transmembrane protein 45B protein-coding 13-PTNLD9-TUMOR_peak_26521 chr2 32264761 32264937 + 4.66411 NA promoter-TSS (NM_032574) promoter-TSS (NM_032574) -5 NM_032574 84661 Hs.444969 NM_032574 DPY30 Cps25|HDPY-30|Saf19 dpy-30 homolog (C. elegans) protein-coding 13-PTNLD9-TUMOR_peak_36413 chr3 151382778 151382890 + 4.66411 NA intron (NR_031678, intron 2 of 4) HERVIP10FH-int|LTR|ERV1 35514 NR_031678 100313773 NR_031678 miRBase:MI0006412 MIR548H2 MIR548H-2|MIRN548H2 microRNA 548h-2 ncRNA 13-PTNLD9-TUMOR_peak_51501 chr8 103931083 103931177 + 4.66411 NA Intergenic Intergenic -54733 NM_015878 51582 Hs.459106 NM_015878 HPRD:07443 AZIN1 OAZI|OAZIN|ODC1L antizyme inhibitor 1 protein-coding 13-PTNLD9-TUMOR_peak_2966 chr1 115993563 115993710 + 4.66411 NA Intergenic Intergenic -112779 NM_002506 4803 Hs.2561 NM_002506 HPRD:08874 NGF Beta-NGF|HSAN5|NGFB nerve growth factor (beta polypeptide) protein-coding 13-PTNLD9-TUMOR_peak_18213 chr16 2009462 2009572 + 4.66388 NA promoter-TSS (NM_004548) promoter-TSS (NM_004548) 0 NM_004548 4716 Hs.513266 NM_004548 HPRD:11958 NDUFB10 PDSW NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10, 22kDa protein-coding 13-PTNLD9-TUMOR_peak_432 chr1 11856627 11856731 + 4.66388 NA intron (NM_005957, intron 4 of 11) intron (NM_005957, intron 4 of 11) -9474 NM_001256959 1185 Hs.193043 NM_001286 HPRD:04102 CLCN6 CLC-6 chloride channel, voltage-sensitive 6 protein-coding 13-PTNLD9-TUMOR_peak_21863 chr17 66255165 66255378 + 4.66388 NA promoter-TSS (NM_014960) promoter-TSS (NM_014960) -52 NM_014960 22901 Hs.437249 NM_014960 ARSG - arylsulfatase G protein-coding 13-PTNLD9-TUMOR_peak_48330 chr7 93527144 93527321 + 4.66388 NA Intergenic L2a|LINE|L2 -6929 NM_001271003 7980 Hs.438231 NM_006528 HPRD:08962 TFPI2 PP5|REF1|TFPI-2 tissue factor pathway inhibitor 2 protein-coding 13-PTNLD9-TUMOR_peak_44067 chr6 20543285 20543462 + 4.66388 NA intron (NM_017774, intron 2 of 15) L1MD1|LINE|L1 8685 NM_017774 54901 Hs.657604 NM_017774 HPRD:13022 CDKAL1 - CDK5 regulatory subunit associated protein 1-like 1 protein-coding 13-PTNLD9-TUMOR_peak_3991 chr1 157475575 157475695 + 4.66388 NA Intergenic Intergenic 46675 NM_031281 83416 Hs.415950 NM_031281 HPRD:16169 FCRL5 BXMAS1|CD307|CD307e|FCRH5|IRTA2|PRO820 Fc receptor-like 5 protein-coding 13-PTNLD9-TUMOR_peak_40460 chr5 17598967 17599260 + 4.66264 NA Intergenic MLT1E3|LTR|ERVL-MaLR -211694 NR_033975 401177 Hs.508311 NR_033975 ENSG00000250822 LOC401177 - uncharacterized LOC401177 ncRNA 13-PTNLD9-TUMOR_peak_49266 chr7 137020678 137020791 + 4.66182 NA intron (NM_002825, intron 1 of 4) intron (NM_002825, intron 1 of 4) 7812 NM_002825 5764 Hs.371249 NM_002825 HPRD:01199 PTN HARP|HBGF8|HBNF|NEGF1 pleiotrophin protein-coding 13-PTNLD9-TUMOR_peak_14796 chr13 53024261 53024417 + 4.66182 NA promoter-TSS (NM_001282169) promoter-TSS (NM_001282169) 40 NM_001282169 51028 Hs.109520 NM_016075 HPRD:12620 VPS36 C13orf9|EAP45 vacuolar protein sorting 36 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_10475 chr11 70090174 70090303 + 4.66182 NA Intergenic Intergenic -26568 NR_045286 8500 Hs.530749 NM_003626 HPRD:11451 PPFIA1 LIP.1|LIP1|LIPRIN protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_31500 chr20 50366326 50366434 + 4.66084 NA intron (NM_006045, intron 1 of 27) intron (NM_006045, intron 1 of 27) 18528 NM_006045 10079 Hs.649234 NM_006045 HPRD:18541 ATP9A ATPIIA ATPase, class II, type 9A protein-coding 13-PTNLD9-TUMOR_peak_49632 chr7 150672119 150672274 + 4.66084 NA intron (NM_000238, intron 1 of 14) CpG 3206 NM_172056 3757 Hs.647099 NM_000238 HPRD:01069 KCNH2 ERG1|HERG|HERG1|Kv11.1|LQT2|SQT1 potassium voltage-gated channel, subfamily H (eag-related), member 2 protein-coding 13-PTNLD9-TUMOR_peak_1137 chr1 36669243 36669444 + 4.65755 NA Intergenic Intergenic -20674 NM_005119 9967 Hs.744057 NM_005119 HPRD:07543 THRAP3 TRAP150 thyroid hormone receptor associated protein 3 protein-coding 13-PTNLD9-TUMOR_peak_17820 chr15 83114128 83114234 + 4.65755 NA intron (NR_111962, intron 7 of 10) CpG 15471 NM_198181 440295 Hs.498322 NM_198181 HPRD:11262 GOLGA6L9 GOLGA6L20 golgin A6 family-like 9 protein-coding 13-PTNLD9-TUMOR_peak_43201 chr5 176884683 176884841 + 4.65391 NA intron (NM_004395, intron 12 of 13) intron (NM_004395, intron 12 of 13) 9436 NM_001174102 80758 Hs.534492 NM_030567 HPRD:15186 PRR7 - proline rich 7 (synaptic) protein-coding 13-PTNLD9-TUMOR_peak_3793 chr1 154529059 154529163 + 4.65001 NA intron (NM_017582, intron 1 of 12) intron (NM_017582, intron 1 of 12) 2009 NM_017582 55585 Hs.607928 NM_017582 HPRD:15601 UBE2Q1 GTAP|NICE-5|UBE2Q ubiquitin-conjugating enzyme E2Q family member 1 protein-coding 13-PTNLD9-TUMOR_peak_37388 chr3 195547859 195547987 + 4.64407 NA Intergenic Intergenic -9079 NM_018406 4585 Hs.369646 NM_004532 HPRD:11829 MUC4 ASGP|HSA276359|MUC-4 mucin 4, cell surface associated protein-coding 13-PTNLD9-TUMOR_peak_32706 chr22 18802187 18802281 + 4.64366 NA Intergenic MIR3|SINE|MIR -22760 NR_003267 2679 Hs.595809 NR_003267 ENSG00000197421 GGT3P GGT3 gamma-glutamyltransferase 3 pseudogene pseudo 13-PTNLD9-TUMOR_peak_9918 chr11 58443093 58443249 + 4.64366 NA Intergenic Intergenic 53025 NM_000614 1270 Hs.524920 NM_000614 HPRD:00347 CNTF HCNTF ciliary neurotrophic factor protein-coding 13-PTNLD9-TUMOR_peak_53558 chr9 71991619 71991754 + 4.64366 NA intron (NM_004816, intron 4 of 10) intron (NM_004816, intron 4 of 10) 47445 NM_004816 9413 Hs.118003 NM_004816 HPRD:16255 FAM189A2 C9orf61|X123 family with sequence similarity 189, member A2 protein-coding 13-PTNLD9-TUMOR_peak_3808 chr1 154809564 154809658 + 4.64366 NA intron (NM_002249, intron 1 of 7) AluSc|SINE|Alu 22727 NM_170782 3782 Hs.490765 NM_002249 HPRD:04283 KCNN3 KCa2.3|SK3|SKCA3|hSK3 potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3 protein-coding 13-PTNLD9-TUMOR_peak_28928 chr2 162962722 162962966 + 4.64366 NA Intergenic L1MB8|LINE|L1 -8107 NR_110255 101929532 Hs.639883 NR_110255 ENSG00000236841 LOC101929532 - uncharacterized LOC101929532 ncRNA 13-PTNLD9-TUMOR_peak_26708 chr2 43265573 43265729 + 4.64366 NA intron (NR_110585, intron 1 of 5) intron (NR_110585, intron 1 of 5) 1031 NR_110585 102723854 Hs.570165 NR_110585 LOC102723854 - uncharacterized LOC102723854 ncRNA 13-PTNLD9-TUMOR_peak_17282 chr15 51329655 51329832 + 4.64366 NA Intergenic L1PA3|LINE|L1 67730 NM_207381 388121 Hs.306343 NM_207381 HPRD:13452 TNFAIP8L3 - tumor necrosis factor, alpha-induced protein 8-like 3 protein-coding 13-PTNLD9-TUMOR_peak_30292 chr20 2489509 2489643 + 4.64366 NA 5' UTR (NM_001282496, exon 1 of 6) 5' UTR (NM_001282496, exon 1 of 6) 202 NM_001282497 79175 Hs.516846 NM_024325 HPRD:18327 ZNF343 dJ734P14.5 zinc finger protein 343 protein-coding 13-PTNLD9-TUMOR_peak_39620 chr4 151796081 151796240 + 4.64366 NA intron (NM_006726, intron 17 of 57) L1PA16|LINE|L1 140259 NM_001199282 987 Hs.480938 NM_006726 HPRD:07344 LRBA BGL|CDC4L|CVID8|LAB300|LBA LPS-responsive vesicle trafficking, beach and anchor containing protein-coding 13-PTNLD9-TUMOR_peak_12048 chr12 7341644 7341780 + 4.64366 NA promoter-TSS (NM_001131025) promoter-TSS (NM_001131025) -47 NM_001131026 5830 Hs.567327 NM_000319 HPRD:02684 PEX5 PBD2A|PBD2B|PTS1-BP|PTS1R|PXR1 peroxisomal biogenesis factor 5 protein-coding 13-PTNLD9-TUMOR_peak_5514 chr1 223574401 223574567 + 4.64366 NA Intergenic L1PA2|LINE|L1 7769 NM_152610 164127 Hs.192090 NM_152610 HPRD:08761 CCDC185 C1orf65 coiled-coil domain containing 185 protein-coding 13-PTNLD9-TUMOR_peak_18934 chr16 29471150 29471440 + 4.64086 NA promoter-TSS (NM_001017390) promoter-TSS (NM_001017390) 88 NM_177552 6818 Hs.460558 NM_003166 HPRD:07199 SULT1A3 HAST|HAST3|M-PST|ST1A3/ST1A4|ST1A5|STM|TL-PST sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3 protein-coding 13-PTNLD9-TUMOR_peak_10267 chr11 65728834 65728928 + 4.63986 NA promoter-TSS (NM_005146) promoter-TSS (NM_005146) -279 NM_005146 9092 Hs.502883 NM_005146 HPRD:10440 SART1 Ara1|HOMS1|SART1259|SNRNP110|Snu66 squamous cell carcinoma antigen recognized by T cells protein-coding 13-PTNLD9-TUMOR_peak_50287 chr8 22405190 22405286 + 4.63986 NA Intergenic Intergenic -4013 NM_005775 10174 Hs.528572 NM_005775 HPRD:11535 SORBS3 SCAM-1|SCAM1|SH3D4 sorbin and SH3 domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_50027 chr8 8000863 8001048 + 4.63986 NA Intergenic HERVS71-int|LTR|ERV1 -54344 NR_031689 100302186 NR_031689 miRBase:MI0006423 MIR548I3 MIR548I-3|MIRN548I3|hsa-mir-548i-3 microRNA 548i-3 ncRNA 13-PTNLD9-TUMOR_peak_29565 chr2 202897660 202897825 + 4.63986 NA Intergenic CpG -1568 NM_003507 8324 Hs.173859 NM_003507 HPRD:04560 FZD7 FzE3 frizzled class receptor 7 protein-coding 13-PTNLD9-TUMOR_peak_33063 chr22 29707099 29707307 + 4.63986 NA intron (NM_001278730, intron 5 of 5) intron (NM_001278730, intron 5 of 5) 4218 NM_001278730 10634 Hs.322852 NM_006478 HPRD:03676 GAS2L1 GAR22 growth arrest-specific 2 like 1 protein-coding 13-PTNLD9-TUMOR_peak_11215 chr11 112002383 112002660 + 4.63896 NA Intergenic Intergenic 32319 NM_001243211 3606 Hs.83077 NM_001562 HPRD:02976 IL18 IGIF|IL-18|IL-1g|IL1F4 interleukin 18 protein-coding 13-PTNLD9-TUMOR_peak_13036 chr12 57632948 57633071 + 4.63896 NA intron (NM_020142, intron 1 of 4) CpG 1466 NM_020142 56901 Hs.75069 NM_020142 HPRD:14249 NDUFA4L2 NUOMS NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2 protein-coding 13-PTNLD9-TUMOR_peak_4174 chr1 162161642 162161790 + 4.63873 NA intron (NM_001164757, intron 2 of 9) intron (NM_001164757, intron 2 of 9) 34819 NR_039798 100616386 NR_039798 MIR4654 - microRNA 4654 ncRNA 13-PTNLD9-TUMOR_peak_20929 chr17 36276879 36276973 + 4.63873 NA Intergenic AluSg|SINE|Alu -7051 NM_001001418 414060 Hs.735975 NM_001001418 HPRD:17559 TBC1D3C TBC1D3D TBC1 domain family, member 3C protein-coding 13-PTNLD9-TUMOR_peak_41748 chr5 112021812 112021906 + 4.63873 NA Intergenic Intergenic -3274 NR_104673 102467216 Hs.174158 NR_104673 LOC102467216 - uncharacterized LOC102467216 ncRNA 13-PTNLD9-TUMOR_peak_18292 chr16 3033787 3033951 + 4.63873 NA Intergenic Intergenic -3329 NM_182687 9088 Hs.732385 NM_004203 HPRD:03920 PKMYT1 MYT1|PPP1R126 protein kinase, membrane associated tyrosine/threonine 1 protein-coding 13-PTNLD9-TUMOR_peak_24084 chr19 12949214 12949317 + 4.63873 NA promoter-TSS (NM_014975) promoter-TSS (NM_014975) 6 NM_014975 22983 Hs.227489 NM_014975 HPRD:17469 MAST1 SAST|SAST170 microtubule associated serine/threonine kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_29054 chr2 171673322 171673484 + 4.63873 NA 5' UTR (NM_000817, exon 1 of 17) 5' UTR (NM_000817, exon 1 of 17) 203 NM_013445 2571 Hs.420036 NM_000817 HPRD:12011 GAD1 CPSQ1|GAD|SCP glutamate decarboxylase 1 (brain, 67kDa) protein-coding 13-PTNLD9-TUMOR_peak_56385 chrX 116395127 116395221 + 4.63176 NA Intergenic L1PA3|LINE|L1 712527 NM_033495 90293 Hs.348262 NM_033495 HPRD:06461 KLHL13 BKLHD2 kelch-like family member 13 protein-coding 13-PTNLD9-TUMOR_peak_30315 chr20 3389404 3389604 + 4.63176 NA Intergenic Intergenic -1195 NM_001009984 25943 Hs.516853 NM_001009984 ENSG00000088854 C20orf194 - chromosome 20 open reading frame 194 protein-coding 13-PTNLD9-TUMOR_peak_33473 chr22 47225502 47225596 + 4.63176 NA intron (NR_104292, intron 5 of 13) intron (NR_104292, intron 5 of 13) 55725 NM_001284305 25771 Hs.435044 NM_014346 HPRD:15474 TBC1D22A C22orf4|HSC79E021 TBC1 domain family, member 22A protein-coding 13-PTNLD9-TUMOR_peak_46014 chr6 125684696 125684832 + 4.63176 NA Intergenic CpG -61482 NM_016063 51020 Hs.32826 NM_016063 HPRD:12897 HDDC2 C6orf74|NS5ATP2|dJ167O5.2 HD domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_54903 chr9 132472038 132472209 + 4.63176 NA intron (NM_016307, intron 1 of 3) intron (NM_016307, intron 1 of 3) 43221 NM_004878 9536 Hs.146688 NM_004878 HPRD:05528 PTGES MGST-IV|MGST1-L1|MGST1L1|MPGES|PGES|PIG12|PP102|PP1294|TP53I12|mPGES-1 prostaglandin E synthase protein-coding 13-PTNLD9-TUMOR_peak_33426 chr22 45975280 45975487 + 4.63176 NA intron (NM_006486, intron 16 of 16) intron (NM_006486, intron 16 of 16) 76664 NM_001996 2192 Hs.24601 NM_001996 HPRD:00629 FBLN1 FBLN|FIBL1 fibulin 1 protein-coding 13-PTNLD9-TUMOR_peak_9095 chr11 12399077 12399205 + 4.63176 NA exon (NM_018222, exon 1 of 13) exon (NM_018222, exon 1 of 13) 115 NM_018222 55742 Hs.432914 NM_018222 PARVA CH-ILKBP|MXRA2 parvin, alpha protein-coding 13-PTNLD9-TUMOR_peak_45109 chr6 43806472 43806566 + 4.63176 NA Intergenic Intergenic -52246 NR_024478 100132354 Hs.376232 NR_024478 LINC01512 - long intergenic non-protein coding RNA 1512 ncRNA 13-PTNLD9-TUMOR_peak_38867 chr4 89658906 89659020 + 4.63176 NA intron (NM_001015045, intron 14 of 17) intron (NM_001015045, intron 14 of 17) 28023 NR_002806 285512 Hs.744957 NR_002806 ENSG00000248019 FAM13A-AS1 FAM13A1OS|FAM13AOS|NCRNA00039 FAM13A antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_54705 chr9 125112994 125113088 + 4.63176 NA Intergenic Intergenic -19768 NM_001271368 5742 Hs.201978 NM_000962 HPRD:07518 PTGS1 COX1|COX3|PCOX1|PES-1|PGG/HS|PGHS-1|PGHS1|PHS1|PTGHS prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) protein-coding 13-PTNLD9-TUMOR_peak_50386 chr8 26015094 26015318 + 4.63176 NA Intergenic L1ME1|LINE|L1 -112566 NM_022659 64641 Hs.491292 NM_022659 HPRD:16848 EBF2 COE2|EBF-2|O/E-3|OE-3 early B-cell factor 2 protein-coding 13-PTNLD9-TUMOR_peak_28512 chr2 133196318 133196496 + 4.63176 NA intron (NM_001508, intron 1 of 1) intron (NM_001508, intron 1 of 1) 22260 NM_001508 2863 Hs.432395 NM_001508 HPRD:04198 GPR39 - G protein-coupled receptor 39 protein-coding 13-PTNLD9-TUMOR_peak_19714 chr16 71074012 71074107 + 4.63176 NA intron (NM_001270974, intron 18 of 85) LTR1D|LTR|ERV1 190566 NM_001270974 54768 Hs.461229 NM_017558 HPRD:11042 HYDIN CILD5|HYDIN1|HYDIN2|PPP1R31 HYDIN, axonemal central pair apparatus protein protein-coding 13-PTNLD9-TUMOR_peak_48898 chr7 121924401 121924539 + 4.63176 NA Intergenic L1PA2|LINE|L1 -19242 NR_036484 154860 Hs.664204 NR_036484 ENSG00000230316 FEZF1-AS1 - FEZF1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_30288 chr20 2269708 2269949 + 4.63176 NA Intergenic MIR3|SINE|MIR -6785 NM_003245 7053 Hs.2022 NM_003245 HPRD:02584 TGM3 TGE transglutaminase 3 protein-coding 13-PTNLD9-TUMOR_peak_30334 chr20 3996375 3996480 + 4.63176 NA promoter-TSS (NM_007219) promoter-TSS (NM_007219) -211 NM_001134338 11237 Hs.589884 NM_007219 HPRD:10198 RNF24 G1L ring finger protein 24 protein-coding 13-PTNLD9-TUMOR_peak_12204 chr12 13340373 13340623 + 4.63176 NA Intergenic Intergenic -9104 NM_001423 2012 Hs.719042 NM_001423 HPRD:11892 EMP1 CL-20|EMP-1|TMP epithelial membrane protein 1 protein-coding 13-PTNLD9-TUMOR_peak_39273 chr4 124753893 124754045 + 4.63176 NA intron (NR_027105, intron 3 of 4) intron (NR_027105, intron 3 of 4) 58550 NR_027106 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 13-PTNLD9-TUMOR_peak_20181 chr16 90189505 90189599 + 4.62403 NA Intergenic Intergenic -47214 NM_001098173 11105 Hs.406695 NM_052996 HPRD:17903 PRDM7 PFM4|ZNF910 PR domain containing 7 protein-coding 13-PTNLD9-TUMOR_peak_42741 chr5 154133444 154133590 + 4.62210 NA intron (NM_015315, intron 1 of 18) intron (NM_015315, intron 1 of 18) 41055 NM_015315 23367 Hs.292078 NM_015315 HPRD:11225 LARP1 LARP La ribonucleoprotein domain family, member 1 protein-coding 13-PTNLD9-TUMOR_peak_25395 chr19 50168816 50168985 + 4.62010 NA non-coding (NR_045568, exon 1 of 8) non-coding (NR_045568, exon 1 of 8) 232 NM_001197126 3661 Hs.75254 NM_001571 HPRD:04769 IRF3 - interferon regulatory factor 3 protein-coding 13-PTNLD9-TUMOR_peak_10454 chr11 69455903 69456015 + 4.61990 NA promoter-TSS (NM_053056) promoter-TSS (NM_053056) 86 NM_053056 595 Hs.523852 NM_053056 HPRD:01346 CCND1 BCL1|D11S287E|PRAD1|U21B31 cyclin D1 protein-coding 13-PTNLD9-TUMOR_peak_19048 chr16 31044170 31044294 + 4.61990 NA promoter-TSS (NM_001272095) promoter-TSS (NM_001272095) -184 NM_001272096 6810 Hs.83734 NM_004604 HPRD:01722 STX4 STX4A|p35-2 syntaxin 4 protein-coding 13-PTNLD9-TUMOR_peak_49614 chr7 150036559 150036694 + 4.61990 NA intron (NM_002889, intron 3 of 5) intron (NM_002889, intron 3 of 5) 2137 NM_002889 5919 Hs.647064 NM_002889 HPRD:03577 RARRES2 HP10433|TIG2 retinoic acid receptor responder (tazarotene induced) 2 protein-coding 13-PTNLD9-TUMOR_peak_28952 chr2 164635032 164635126 + 4.61673 NA Intergenic Intergenic -42566 NM_018086 55137 Hs.593650 NM_018086 FIGN - fidgetin protein-coding 13-PTNLD9-TUMOR_peak_27718 chr2 96926629 96926807 + 4.61673 NA intron (NM_017849, intron 2 of 3) intron (NM_017849, intron 2 of 3) 5033 NM_017849 55654 Hs.164303 NM_017849 TMEM127 - transmembrane protein 127 protein-coding 13-PTNLD9-TUMOR_peak_24006 chr19 11492328 11492466 + 4.61610 NA exon (NM_000121, exon 4 of 8) exon (NM_000121, exon 4 of 8) 2621 NM_000121 2057 Hs.631624 NM_000121 HPRD:00587 EPOR EPO-R erythropoietin receptor protein-coding 13-PTNLD9-TUMOR_peak_18283 chr16 2954284 2954464 + 4.61610 NA Intergenic CpG -7606 NM_032296 84256 Hs.655321 NM_020912 HPRD:13222 FLYWCH1 - FLYWCH-type zinc finger 1 protein-coding 13-PTNLD9-TUMOR_peak_20081 chr16 88682818 88683021 + 4.61594 NA intron (NM_144604, intron 8 of 17) intron (NM_144604, intron 8 of 17) -22082 NM_013278 27189 Hs.278911 NM_013278 HPRD:06863 IL17C CX2|IL-17C interleukin 17C protein-coding 13-PTNLD9-TUMOR_peak_56334 chrX 108780340 108780460 + 4.61594 NA promoter-TSS (NM_001242618) promoter-TSS (NM_001242618) 53 NM_001242618 55916 Hs.25010 NM_018698 HPRD:02264 NXT2 P15-2 nuclear transport factor 2-like export factor 2 protein-coding 13-PTNLD9-TUMOR_peak_164 chr1 3494001 3494209 + 4.61594 NA intron (NM_001409, intron 4 of 36) intron (NM_001409, intron 4 of 36) -16751 NR_030277 693135 NR_030277 MIR551A MIRN551A microRNA 551a ncRNA 13-PTNLD9-TUMOR_peak_35835 chr3 128787432 128787637 + 4.61594 NA Intergenic LTR12C|LTR|ERV1 7924 NM_000174 2815 Hs.1144 NM_000174 HPRD:01432 GP9 CD42a|GPIX glycoprotein IX (platelet) protein-coding 13-PTNLD9-TUMOR_peak_8808 chr11 2200349 2200565 + 4.61594 NA Intergenic Intergenic 6164 NR_039834 100616126 NR_039834 miRBase:MI0017318 MIR4686 - microRNA 4686 ncRNA 13-PTNLD9-TUMOR_peak_44292 chr6 27125889 27126007 + 4.61594 NA Intergenic tRNA-His-CAY_|tRNA|tRNA 10543 NR_036096 100422934 NR_036096 miRBase:MI0014167 MIR3143 - microRNA 3143 ncRNA 13-PTNLD9-TUMOR_peak_31139 chr20 43160492 43160680 + 4.61594 NA 5' UTR (NM_001281444, exon 1 of 6) 5' UTR (NM_001281444, exon 1 of 6) 164 NM_181804 11142 Hs.472831 NM_007066 HPRD:05379 PKIG PKI-gamma protein kinase (cAMP-dependent, catalytic) inhibitor gamma protein-coding 13-PTNLD9-TUMOR_peak_42348 chr5 140430659 140430753 + 4.61594 NA promoter-TSS (NM_013340) promoter-TSS (NM_013340) -255 NM_013340 29930 Hs.278950 NM_013340 HPRD:08397 PCDHB1 PCDH-BETA1 protocadherin beta 1 protein-coding 13-PTNLD9-TUMOR_peak_22485 chr18 3665923 3666069 + 4.61594 NA intron (NM_001242766, intron 4 of 10) intron (NM_001242766, intron 4 of 10) 62261 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_54555 chr9 117787490 117787623 + 4.61594 NA intron (NM_002160, intron 26 of 27) intron (NM_002160, intron 26 of 27) 92980 NM_002160 3371 Hs.143250 NM_002160 HPRD:01756 TNC 150-225|DFNA56|GMEM|GP|HXB|JI|TN|TN-C tenascin C protein-coding 13-PTNLD9-TUMOR_peak_36579 chr3 159558822 159558924 + 4.61594 NA intron (NM_001197109, intron 1 of 6) intron (NM_001197109, intron 1 of 6) 1223 NM_001197109 29970 Hs.134665 NM_014575 HPRD:15302 SCHIP1 SCHIP-1 schwannomin interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_36241 chr3 142607794 142607975 + 4.61594 NA 5' UTR (NM_013363, exon 1 of 9) 5' UTR (NM_013363, exon 1 of 9) 161 NM_013363 26577 Hs.8944 NM_013363 HPRD:06139 PCOLCE2 PCPE2 procollagen C-endopeptidase enhancer 2 protein-coding 13-PTNLD9-TUMOR_peak_10133 chr11 63933453 63933685 + 4.61594 NA promoter-TSS (NM_014067) promoter-TSS (NM_014067) 16 NM_014067 28992 Hs.602898 NM_014067 HPRD:17448 MACROD1 LRP16 MACRO domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_6495 chr10 12392542 12392855 + 4.61594 NA intron (NM_020397, intron 1 of 9) intron (NM_020397, intron 1 of 9) 1115 NM_153498 57118 Hs.659517 NM_020397 HPRD:06409 CAMK1D CKLiK|CaM-K1|CaMKID calcium/calmodulin-dependent protein kinase ID protein-coding 13-PTNLD9-TUMOR_peak_433 chr1 11857733 11858058 + 4.61424 NA intron (NM_005957, intron 4 of 11) intron (NM_005957, intron 4 of 11) -8258 NM_001256959 1185 Hs.193043 NM_001286 HPRD:04102 CLCN6 CLC-6 chloride channel, voltage-sensitive 6 protein-coding 13-PTNLD9-TUMOR_peak_630 chr1 22091253 22091464 + 4.61424 NA intron (NM_032236, intron 1 of 26) MER21B|LTR|ERVL 18330 NM_001032730 84196 Hs.467524 NM_032236 HPRD:15637 USP48 RAP1GA1|USP31 ubiquitin specific peptidase 48 protein-coding 13-PTNLD9-TUMOR_peak_45650 chr6 86168972 86169073 + 4.61424 NA intron (NM_002526, intron 1 of 8) intron (NM_002526, intron 1 of 8) 9720 NM_002526 4907 Hs.153952 NM_002526 HPRD:00552 NT5E CALJA|CD73|E5NT|NT|NT5|NTE|eN|eNT 5'-nucleotidase, ecto (CD73) protein-coding 13-PTNLD9-TUMOR_peak_33669 chr3 9115890 9116004 + 4.61424 NA intron (NM_001033117, intron 4 of 21) intron (NM_001033117, intron 4 of 21) -110788 NM_020165 56852 Hs.375684 NM_020165 HPRD:09242 RAD18 RNF73 RAD18 E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_30945 chr20 35572783 35572877 + 4.61424 NA intron (NM_015474, intron 2 of 15) intron (NM_015474, intron 2 of 15) 7416 NM_015474 25939 Hs.580681 NM_015474 HPRD:08418 SAMHD1 CHBL2|DCIP|HDDC1|MOP-5|SBBI88 SAM domain and HD domain 1 protein-coding 13-PTNLD9-TUMOR_peak_10376 chr11 67572038 67572145 + 4.60655 NA intron (NR_024249, intron 1 of 3) intron (NR_024249, intron 1 of 3) 716 NR_024249 645332 Hs.535094 NR_024249 ENSG00000160172 FAM86C2P - family with sequence similarity 86, member A pseudogene pseudo 13-PTNLD9-TUMOR_peak_42117 chr5 133860033 133860134 + 4.60176 NA Intergenic CpG -1257 NM_001289985 23338 Hs.732155 NM_015288 HPRD:15124 JADE2 JADE-2|PHF15 jade family PHD finger 2 protein-coding 13-PTNLD9-TUMOR_peak_42909 chr5 167722669 167722808 + 4.60176 NA intron (NM_015238, intron 1 of 22) intron (NM_015238, intron 1 of 22) 3673 NM_001161662 23286 Hs.484047 NM_015238 HPRD:10033 WWC1 HBEBP3|HBEBP36|KIBRA|MEMRYQTL|PPP1R168 WW and C2 domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_47520 chr7 54898780 54898900 + 4.60176 NA Intergenic L2a|LINE|L2 71834 NR_110040 100996654 Hs.127991 NR_110040 LOC100996654 - uncharacterized LOC100996654 ncRNA 13-PTNLD9-TUMOR_peak_25491 chr19 51516156 51516252 + 4.60176 NA 3' UTR (NM_002776, exon 6 of 6) 3' UTR (NM_002776, exon 6 of 6) -3314 NM_012315 284366 Hs.448942 NM_012315 HPRD:05692 KLK9 KLK-L3|KLKL3 kallikrein-related peptidase 9 protein-coding 13-PTNLD9-TUMOR_peak_21067 chr17 39957736 39957830 + 4.59968 NA TTS (NM_006455) TTS (NM_006455) 10668 NM_006455 10609 Hs.446459 NM_006455 HPRD:10126 LEPREL4 NO55|NOL55|SC65 leprecan-like 4 protein-coding 13-PTNLD9-TUMOR_peak_11064 chr11 102473870 102474055 + 4.59968 NA intron (NM_004771, intron 6 of 9) intron (NM_004771, intron 6 of 9) 22101 NM_004771 9313 Hs.591946 NM_004771 HPRD:05218 MMP20 AI2A2|MMP-20 matrix metallopeptidase 20 protein-coding 13-PTNLD9-TUMOR_peak_10303 chr11 66335970 66336142 + 4.59910 NA promoter-TSS (NM_003793) promoter-TSS (NM_003793) -9 NM_003793 8722 Hs.11590 NM_003793 HPRD:04643 CTSF CATSF|CLN13 cathepsin F protein-coding 13-PTNLD9-TUMOR_peak_34020 chr3 19626226 19626394 + 4.59910 NA Intergenic L1PA4|LINE|L1 -269887 NR_039954 100616291 NR_039954 miRBase:MI0017438 MIR4791 - microRNA 4791 ncRNA 13-PTNLD9-TUMOR_peak_50435 chr8 27449851 27449975 + 4.59910 NA Intergenic CpG 18355 NR_106902 102465508 NR_106902 MIR6843 hsa-mir-6843 microRNA 6843 ncRNA 13-PTNLD9-TUMOR_peak_56477 chrX 129254958 129255182 + 4.59910 NA Intergenic CpG -10382 NM_001127197 2000 Hs.271940 NM_001421 HPRD:06499 ELF4 ELFR|MEF E74-like factor 4 (ets domain transcription factor) protein-coding 13-PTNLD9-TUMOR_peak_30626 chr20 24015557 24015687 + 4.59910 NA Intergenic Intergenic -46206 NM_178311 92086 Hs.355394 NM_080920 HPRD:17037 GGTLC1 GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2 gamma-glutamyltransferase light chain 1 protein-coding 13-PTNLD9-TUMOR_peak_17552 chr15 70174271 70174367 + 4.59910 NA Intergenic Intergenic 46746 NR_026764 414926 Hs.569502 NR_026764 ENSG00000259703 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 13-PTNLD9-TUMOR_peak_37341 chr3 194461654 194461863 + 4.59910 NA intron (NR_037891, intron 1 of 3) intron (NR_037891, intron 1 of 3) 32608 NR_037891 100507391 Hs.590099 NR_037891 ENSG00000237222 LOC100507391 - uncharacterized LOC100507391 ncRNA 13-PTNLD9-TUMOR_peak_51822 chr8 124229327 124229590 + 4.59910 NA Intergenic Intergenic -1355 NR_039808 100616260 NR_039808 miRBase:MI0017292 MIR4663 - microRNA 4663 ncRNA 13-PTNLD9-TUMOR_peak_43839 chr6 13335379 13335473 + 4.59910 NA Intergenic Intergenic -6611 NM_001258457 51256 Hs.484678 NM_016495 HPRD:18165 TBC1D7 MGCPH|PIG51|TBC7 TBC1 domain family, member 7 protein-coding 13-PTNLD9-TUMOR_peak_48274 chr7 90871550 90871674 + 4.59910 NA Intergenic Intergenic -22171 NM_003505 8321 Hs.94234 NM_003505 HPRD:04558 FZD1 - frizzled class receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_42601 chr5 149267188 149267291 + 4.59910 NA intron (NM_000440, intron 13 of 21) LTR46|LTR|ERV1 45301 NR_110534 644762 Hs.730366 NR_110534 LOC644762 - mitochondrial fission factor pseudogene pseudo 13-PTNLD9-TUMOR_peak_33055 chr22 29326689 29326976 + 4.59910 NA intron (NM_032173, intron 1 of 8) intron (NM_032173, intron 1 of 8) 13455 NM_032173 84133 Hs.604200 NM_032173 ENSG00000183579 ZNRF3 BK747E2.3|RNF203 zinc and ring finger 3 protein-coding 13-PTNLD9-TUMOR_peak_33594 chr3 4927072 4927248 + 4.59910 NA Intergenic Intergenic -12750 NR_037903 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_1826 chr1 54150892 54151119 + 4.59910 NA intron (NM_147193, intron 1 of 9) intron (NM_147193, intron 1 of 9) 48872 NM_147193 148979 Hs.306691 NM_147193 HPRD:13581 GLIS1 - GLIS family zinc finger 1 protein-coding 13-PTNLD9-TUMOR_peak_11668 chr11 130473045 130473307 + 4.59910 NA Intergenic Intergenic -63454 NR_107019 102466873 NR_107019 MIR8052 hsa-mir-8052 microRNA 8052 ncRNA 13-PTNLD9-TUMOR_peak_16044 chr14 65437656 65437750 + 4.59910 NA intron (NM_198686, intron 1 of 6) intron (NM_198686, intron 1 of 6) 1172 NM_198686 376267 Hs.512492 NM_198686 HPRD:11467 RAB15 - RAB15, member RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_20870 chr17 33446758 33446974 + 4.59910 NA promoter-TSS (NM_001142571) promoter-TSS (NM_001142571) 22 NM_001142571 5892 Hs.631757 NM_002878 HPRD:04261 RAD51D BROVCA4|R51H3|RAD51L3|TRAD RAD51 paralog D protein-coding 13-PTNLD9-TUMOR_peak_6225 chr10 310610 310706 + 4.59910 NA Intergenic Intergenic 84724 NM_001202468 10771 Hs.292265 NM_006624 HPRD:09830 ZMYND11 BRAM1|BS69 zinc finger, MYND-type containing 11 protein-coding 13-PTNLD9-TUMOR_peak_54264 chr9 104249237 104249425 + 4.59910 NA 5' UTR (NM_032342, exon 1 of 2) 5' UTR (NM_032342, exon 1 of 2) 144 NM_032342 84302 Hs.655738 NM_032342 TMEM246 C9orf125 transmembrane protein 246 protein-coding 13-PTNLD9-TUMOR_peak_56684 chrX 153157937 153158127 + 4.59910 NA Intergenic Intergenic -6404 NM_001278116 3897 Hs.522818 NM_000425 HPRD:02394 L1CAM CAML1|CD171|HSAS|HSAS1|MASA|MIC5|N-CAM-L1|N-CAML1|NCAM-L1|S10|SPG1 L1 cell adhesion molecule protein-coding 13-PTNLD9-TUMOR_peak_20521 chr17 15549417 15549669 + 4.59491 NA intron (NM_006470, intron 4 of 8) intron (NM_006470, intron 4 of 8) -26525 NM_001282540 374286 Hs.548021 NM_006382 HPRD:16699 CDRT1 C170RF1|C17ORF1|C17ORF1A|FBXW10B|FBXW10P1|HREP|SM25H2 CMT1A duplicated region transcript 1 protein-coding 13-PTNLD9-TUMOR_peak_23579 chr19 751023 751282 + 4.59491 NA promoter-TSS (NM_173481) promoter-TSS (NM_173481) 6 NM_173481 126353 Hs.439180 NM_173481 HPRD:12695 MISP C19orf21 mitotic spindle positioning protein-coding 13-PTNLD9-TUMOR_peak_17493 chr15 67402031 67402231 + 4.59491 NA intron (NM_005902, intron 1 of 8) intron (NM_005902, intron 1 of 8) -15923 NM_001145102 4088 Hs.727986 NM_005902 HPRD:04380 SMAD3 HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3 SMAD family member 3 protein-coding 13-PTNLD9-TUMOR_peak_1858 chr1 55007922 55008068 + 4.59491 NA Intergenic CpG -5812 NM_015547 26027 Hs.745173 NM_015547 HPRD:07075 ACOT11 BFIT|STARD14|THEA|THEM1 acyl-CoA thioesterase 11 protein-coding 13-PTNLD9-TUMOR_peak_22023 chr17 73761154 73761268 + 4.59491 NA promoter-TSS (NM_000154) promoter-TSS (NM_000154) 69 NM_000154 2584 Hs.407966 NM_000154 HPRD:05057 GALK1 GALK|GK1|HEL-S-19 galactokinase 1 protein-coding 13-PTNLD9-TUMOR_peak_54658 chr9 124043825 124044046 + 4.59088 NA non-coding (NR_103560, exon 1 of 1) non-coding (NR_103560, exon 1 of 1) 3873 NR_103560 57000 Hs.522373 NM_020250 ENSG00000235865 GSN-AS1 C9orf31|MOST2 GSN antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_43204 chr5 176923840 176923946 + 4.59088 NA intron (NR_103804, intron 1 of 12) CpG 713 NM_203352 9260 Hs.533040 NM_005451 HPRD:10436 PDLIM7 LMP1|LMP3 PDZ and LIM domain 7 (enigma) protein-coding 13-PTNLD9-TUMOR_peak_33374 chr22 42961093 42961194 + 4.58917 NA intron (NR_104300, intron 8 of 10) 7SK|RNA|RNA 11275 NM_014509 253190 Hs.728878 NM_014509 HPRD:15908 SERHL2 dJ222E13.1 serine hydrolase-like 2 protein-coding 13-PTNLD9-TUMOR_peak_39734 chr4 157892067 157892161 + 4.58917 NA non-coding (NR_036641, exon 1 of 7) non-coding (NR_036641, exon 1 of 7) 432 NM_016205 56034 Hs.570855 NM_016205 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 13-PTNLD9-TUMOR_peak_33083 chr22 30592690 30592871 + 4.58917 NA Intergenic Intergenic 50060 NM_001257135 3976 Hs.2250 NM_002309 HPRD:08869 LIF CDF|DIA|HILDA|MLPLI leukemia inhibitory factor protein-coding 13-PTNLD9-TUMOR_peak_19655 chr16 69373146 69373261 + 4.58917 NA promoter-TSS (NM_001199434) promoter-TSS (NM_001199434) -212 NM_016101 51388 Hs.585728 NM_016101 HPRD:16709 NIP7 HSPC031|KD93 NIP7, nucleolar pre-rRNA processing protein protein-coding 13-PTNLD9-TUMOR_peak_6467 chr10 11755405 11755576 + 4.58917 NA Intergenic Intergenic -28866 NM_024693 79746 Hs.22242 NM_024693 HPRD:10930 ECHDC3 - enoyl CoA hydratase domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_39242 chr4 122700556 122700730 + 4.58810 NA Intergenic Intergenic -14303 NM_152399 132332 Hs.27524 NM_152399 HPRD:08089 TMEM155 - transmembrane protein 155 protein-coding 13-PTNLD9-TUMOR_peak_41378 chr5 77944022 77944665 + 4.58810 NA 5' UTR (NM_005779, exon 1 of 5) 5' UTR (NM_005779, exon 1 of 5) 305 NM_005779 10184 Hs.79299 NM_005779 HPRD:17272 LHFPL2 - lipoma HMGIC fusion partner-like 2 protein-coding 13-PTNLD9-TUMOR_peak_8383 chr10 116172986 116173085 + 4.58810 NA Intergenic Intergenic -8498 NM_032550 84632 Hs.501106 NM_032550 HPRD:13902 AFAP1L2 KIAA1914|XB130 actin filament associated protein 1-like 2 protein-coding 13-PTNLD9-TUMOR_peak_31128 chr20 42876961 42877057 + 4.58810 NA intron (NR_046353, intron 1 of 3) intron (NR_046353, intron 1 of 3) 1111 NR_046353 78997 Hs.517059 NM_024034 HPRD:17033 GDAP1L1 dJ881L22.1|dJ995J12.1.1 ganglioside induced differentiation associated protein 1-like 1 protein-coding 13-PTNLD9-TUMOR_peak_36492 chr3 156355537 156355642 + 4.58810 NA Intergenic Intergenic -36616 NM_015508 25976 Hs.744050 NM_015508 HPRD:18192 TIPARP ARTD14|PARP7|pART14 TCDD-inducible poly(ADP-ribose) polymerase protein-coding 13-PTNLD9-TUMOR_peak_44736 chr6 34625293 34625456 + 4.58810 NA intron (NM_022758, intron 1 of 3) intron (NM_022758, intron 1 of 3) 39253 NM_024294 64771 Hs.643498 NM_022758 HPRD:12837 C6orf106 FP852|dJ391O22.4 chromosome 6 open reading frame 106 protein-coding 13-PTNLD9-TUMOR_peak_47945 chr7 73989854 73989952 + 4.58810 NA intron (NM_005685, intron 22 of 26) L2b|LINE|L2 -82088 NM_032999 2969 Hs.647041 NM_001518 HPRD:03399 GTF2I BAP135|BTKAP1|DIWS|GTFII-I|IB291|SPIN|TFII-I|WBS|WBSCR6 general transcription factor IIi protein-coding 13-PTNLD9-TUMOR_peak_19261 chr16 47922205 47922333 + 4.58810 NA intron (NR_110650, intron 4 of 5) intron (NR_110650, intron 4 of 5) -1228 NR_110649 100507534 Hs.407601 NR_110649 ENSG00000261325 LOC100507534 - uncharacterized LOC100507534 ncRNA 13-PTNLD9-TUMOR_peak_24251 chr19 15980012 15980106 + 4.58810 NA Intergenic LTR16C|LTR|ERVL 28871 NM_001082 8529 Hs.558423 NM_001082 HPRD:05112 CYP4F2 CPF2 cytochrome P450, family 4, subfamily F, polypeptide 2 protein-coding 13-PTNLD9-TUMOR_peak_32038 chr21 27543129 27543224 + 4.58810 NA promoter-TSS (NM_000484) promoter-TSS (NM_000484) -38 NM_001204301 351 Hs.434980 NM_000484 HPRD:00100 APP AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2 amyloid beta (A4) precursor protein protein-coding 13-PTNLD9-TUMOR_peak_4378 chr1 171312957 171313057 + 4.58810 NA Intergenic Intergenic 4972 NR_002719 7151 Hs.661092 NR_002719 TOP1P1 - topoisomerase (DNA) I pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_56052 chrX 64898942 64899367 + 4.58810 NA intron (NM_002444, intron 1 of 12) intron (NM_002444, intron 1 of 12) 11643 NM_002444 4478 Hs.87752 NM_002444 HPRD:02399 MSN HEL70 moesin protein-coding 13-PTNLD9-TUMOR_peak_16909 chr15 30442257 30442351 + 4.58401 NA Intergenic Intergenic 14314 NR_033933 653075 Hs.727141 NR_033933 GOLGA8T - golgin A8 family, member T pseudo 13-PTNLD9-TUMOR_peak_22787 chr18 21406082 21406250 + 4.58401 NA intron (NM_198129, intron 21 of 74) intron (NM_198129, intron 21 of 74) -46818 NM_001127718 3909 Hs.436367 NM_000227 HPRD:02883 LAMA3 BM600|E170|LAMNA|LOCS|lama3a laminin, alpha 3 protein-coding 13-PTNLD9-TUMOR_peak_49570 chr7 148844727 148844926 + 4.58020 NA 5' UTR (NM_170686, exon 1 of 6) 5' UTR (NM_170686, exon 1 of 6) 266 NM_170686 57541 Hs.632032 NM_020781 HPRD:18336 ZNF398 P51|P71|ZER6 zinc finger protein 398 protein-coding 13-PTNLD9-TUMOR_peak_52221 chr8 135843656 135843750 + 4.58020 NA Intergenic CpG -18475 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 13-PTNLD9-TUMOR_peak_16642 chr14 104017179 104017307 + 4.58020 NA Intergenic Intergenic 11412 NM_001015049 9529 Hs.5443 NM_004873 HPRD:04862 BAG5 BAG-5 BCL2-associated athanogene 5 protein-coding 13-PTNLD9-TUMOR_peak_22074 chr17 74557940 74558053 + 4.58020 NA TTS (NR_004396) TTS (NR_004396) 281 NR_004395 677848 NR_004395 ENSG00000163597 SNORD1A R38A|snR38A small nucleolar RNA, C/D box 1A snoRNA 13-PTNLD9-TUMOR_peak_33644 chr3 8539407 8539519 + 4.57521 NA intron (NR_033378, intron 2 of 3) L2a|LINE|L2 3881 NR_033378 100288428 Hs.651576 NR_033378 ENSG00000227110 LMCD1-AS1 - LMCD1 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_19576 chr16 67278333 67278502 + 4.57521 NA intron (NM_013241, intron 1 of 21) intron (NM_013241, intron 1 of 21) 3008 NM_013241 29109 Hs.95231 NM_013241 HPRD:06049 FHOD1 FHOS formin homology 2 domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_37892 chr4 8475194 8475288 + 4.57263 NA intron (NM_152544, intron 10 of 10) intron (NM_152544, intron 10 of 10) 32709 NM_152544 152992 Hs.566191 NM_024950 HPRD:08760 TRMT44 C4orf23|METTL19|TRM44 tRNA methyltransferase 44 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_53904 chr9 91002783 91002889 + 4.57263 NA promoter-TSS (NM_006717) promoter-TSS (NM_006717) -461 NM_006717 10927 Hs.146804 NM_006717 HPRD:18096 SPIN1 SPIN spindlin 1 protein-coding 13-PTNLD9-TUMOR_peak_7769 chr10 75758848 75758942 + 4.57263 NA intron (NM_003373, intron 1 of 20) intron (NM_003373, intron 1 of 20) 1023 NM_014000 7414 Hs.643896 NM_003373 HPRD:01900 VCL CMD1W|CMH15|HEL114|MV|MVCL vinculin protein-coding 13-PTNLD9-TUMOR_peak_42563 chr5 148493333 148493481 + 4.56673 NA Intergenic Tigger3c|DNA|TcMar-Tigger -27639 NM_001301015 22885 Hs.49688 NM_014945 HPRD:12411 ABLIM3 - actin binding LIM protein family, member 3 protein-coding 13-PTNLD9-TUMOR_peak_40968 chr5 57610576 57610793 + 4.56673 NA Intergenic Intergenic 145282 NM_006622 10769 Hs.398157 NM_006622 HPRD:06118 PLK2 SNK|hPlk2|hSNK polo-like kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_34943 chr3 71707405 71707564 + 4.56673 NA Intergenic Intergenic 67042 NM_001134651 317649 Hs.581355 NM_173359 HPRD:10687 EIF4E3 eIF-4E3|eIF4E-3 eukaryotic translation initiation factor 4E family member 3 protein-coding 13-PTNLD9-TUMOR_peak_30502 chr20 17537670 17537769 + 4.56673 NA intron (NM_001278606, intron 1 of 8) intron (NM_001278606, intron 1 of 8) 1886 NM_001278607 631 Hs.129702 NM_001195 HPRD:04494 BFSP1 CP115|CP94|CTRCT33|LIFL-H beaded filament structural protein 1, filensin protein-coding 13-PTNLD9-TUMOR_peak_9116 chr11 12832238 12832336 + 4.56673 NA intron (NM_021961, intron 3 of 12) intron (NM_021961, intron 3 of 12) 136318 NM_021961 7003 Hs.655331 NM_021961 HPRD:01802 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain family member 1 (SV40 transcriptional enhancer factor) protein-coding 13-PTNLD9-TUMOR_peak_35801 chr3 127909523 127909617 + 4.56673 NA intron (NM_021937, intron 1 of 6) Tigger3b|DNA|TcMar-Tigger 37257 NM_021937 60678 Hs.477498 NM_021937 HPRD:07409 EEFSEC EFSEC|SELB eukaryotic elongation factor, selenocysteine-tRNA-specific protein-coding 13-PTNLD9-TUMOR_peak_46868 chr7 7464052 7464290 + 4.56673 NA intron (NM_001037763, intron 25 of 34) intron (NM_001037763, intron 25 of 34) 111289 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen, type XXVIII, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_14923 chr13 84023925 84024042 + 4.56673 NA Intergenic Intergenic 432545 NM_001281503 114798 Hs.415478 NM_052910 HPRD:18063 SLITRK1 LRRC12|TTM SLIT and NTRK-like family, member 1 protein-coding 13-PTNLD9-TUMOR_peak_18819 chr16 24735180 24735287 + 4.56673 NA Intergenic MER20B|DNA|hAT-Charlie -5816 NM_014494 27327 Hs.655057 NM_014494 HPRD:11640 TNRC6A CAGH26|GW1|GW182|TNRC6 trinucleotide repeat containing 6A protein-coding 13-PTNLD9-TUMOR_peak_23276 chr18 55513670 55513769 + 4.56673 NA Intergenic LTR33|LTR|ERVL -43392 NM_005603 5205 Hs.216623 NM_005603 HPRD:03867 ATP8B1 ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1 ATPase, aminophospholipid transporter, class I, type 8B, member 1 protein-coding 13-PTNLD9-TUMOR_peak_45151 chr6 44307731 44307924 + 4.56673 NA Intergenic Intergenic -2570 NM_145026 221409 Hs.135283 NM_145026 HPRD:10248 SPATS1 DDIP|SPATA8|SRSP1 spermatogenesis associated, serine-rich 1 protein-coding 13-PTNLD9-TUMOR_peak_11792 chr12 1225113 1225283 + 4.56673 NA exon (NM_178039, exon 6 of 18) exon (NM_178039, exon 6 of 18) 88284 NM_001301248 23085 Hs.601216 NM_178039 HPRD:06181 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 13-PTNLD9-TUMOR_peak_54369 chr9 111034484 111034578 + 4.56673 NA Intergenic Intergenic 583744 NM_006686 10880 Hs.534390 NM_006686 ACTL7B Tact1 actin-like 7B protein-coding 13-PTNLD9-TUMOR_peak_8544 chr10 126329564 126329660 + 4.56673 NA intron (NM_014661, intron 4 of 4) intron (NM_014661, intron 4 of 4) -62985 NR_120631 101927944 Hs.437448 NR_120630 FAM53B-AS1 - FAM53B antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_43769 chr6 11256374 11256491 + 4.56673 NA intron (NM_001142393, intron 2 of 7) intron (NM_001142393, intron 2 of 7) -23517 NM_001271033 4739 Hs.37982 NM_006403 HPRD:11888 NEDD9 CAS-L|CAS2|CASL|CASS2|HEF1 neural precursor cell expressed, developmentally down-regulated 9 protein-coding 13-PTNLD9-TUMOR_peak_38543 chr4 69227058 69227229 + 4.56673 NA Intergenic Intergenic -11319 NM_001031732 91746 Hs.175955 NM_133370 HPRD:11689 YTHDC1 YT521|YT521-B YTH domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_22541 chr18 9334154 9334268 + 4.56486 NA promoter-TSS (NM_020648) promoter-TSS (NM_020648) -554 NM_020648 57045 Hs.514685 NM_020648 HPRD:05443 TWSG1 TSG twisted gastrulation BMP signaling modulator 1 protein-coding 13-PTNLD9-TUMOR_peak_16458 chr14 92506213 92506465 + 4.56486 NA promoter-TSS (NM_004239) promoter-TSS (NM_004239) 64 NM_004239 9321 Hs.632339 NM_004239 HPRD:05143 TRIP11 ACG1A|CEV14|GMAP-210|TRIP-11|TRIP230 thyroid hormone receptor interactor 11 protein-coding 13-PTNLD9-TUMOR_peak_6504 chr10 12850128 12850372 + 4.56486 NA intron (NM_020397, intron 6 of 9) L2b|LINE|L2 -24883 NR_027322 283070 Hs.600547 NR_027322 LOC283070 - uncharacterized LOC283070 ncRNA 13-PTNLD9-TUMOR_peak_35247 chr3 107103368 107103687 + 4.56486 NA Intergenic Intergenic 7339 NM_032600 84692 Hs.164799 NM_032600 HPRD:14860 CCDC54 NYD-SP17|SP17 coiled-coil domain containing 54 protein-coding 13-PTNLD9-TUMOR_peak_25267 chr19 48281668 48281920 + 4.56486 NA promoter-TSS (NM_003009) promoter-TSS (NM_003009) -48 NM_003009 6415 Hs.631549 NM_003009 HPRD:08377 SEPW1 selW selenoprotein W, 1 protein-coding 13-PTNLD9-TUMOR_peak_39973 chr4 184738212 184738374 + 4.56486 NA Intergenic Intergenic -88216 NM_020225 56977 Hs.21958 NM_020225 HPRD:16823 STOX2 - storkhead box 2 protein-coding 13-PTNLD9-TUMOR_peak_43183 chr5 176727387 176727635 + 4.56203 NA TTS (NM_130781) TTS (NM_130781) 3234 NM_001031677 53917 Hs.16258 NM_130781 HPRD:06697 RAB24 - RAB24, member RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_54800 chr9 129986666 129986832 + 4.56030 NA Intergenic CpG -39192 NM_001286779 84253 Hs.29304 NM_032293 HPRD:13567 GARNL3 bA356B19.1 GTPase activating Rap/RanGAP domain-like 3 protein-coding 13-PTNLD9-TUMOR_peak_43634 chr6 6582502 6582737 + 4.56030 NA intron (NR_026970, intron 1 of 7) MIR|SINE|MIR -6315 NM_004271 9450 Hs.653138 NM_004271 LY86 MD-1|MMD-1|dJ80N2.1 lymphocyte antigen 86 protein-coding 13-PTNLD9-TUMOR_peak_36039 chr3 135615517 135615780 + 4.56030 NA Intergenic Intergenic -68867 NM_001190447 5523 Hs.518155 NM_002718 HPRD:09225 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2, regulatory subunit B'', alpha protein-coding 13-PTNLD9-TUMOR_peak_56695 chrX 153285362 153285474 + 4.56030 NA promoter-TSS (NM_001025243) promoter-TSS (NM_001025243) 22 NR_031757 100313781 NR_031757 miRBase:MI0012489 MIR718 hsa-mir-718 microRNA 718 ncRNA 13-PTNLD9-TUMOR_peak_17763 chr15 80189479 80189715 + 4.56030 NA promoter-TSS (NM_001199758) promoter-TSS (NM_001199758) 30 NM_001199758 10588 Hs.194294 NM_006441 MTHFS HsT19268 5,10-methenyltetrahydrofolate synthetase (5-formyltetrahydrofolate cyclo-ligase) protein-coding 13-PTNLD9-TUMOR_peak_20978 chr17 37617686 37617786 + 4.56030 NA promoter-TSS (NM_016507) promoter-TSS (NM_016507) -28 NM_016507 51755 Hs.416108 NM_015083 HPRD:10849 CDK12 CRK7|CRKR|CRKRS cyclin-dependent kinase 12 protein-coding 13-PTNLD9-TUMOR_peak_11847 chr12 3229026 3229233 + 4.56030 NA intron (NM_006675, intron 2 of 8) MIR3|SINE|MIR 42608 NM_006675 10867 Hs.504517 NM_006675 HPRD:14823 TSPAN9 NET-5|NET5|PP1057 tetraspanin 9 protein-coding 13-PTNLD9-TUMOR_peak_12689 chr12 48551325 48551453 + 4.56030 NA promoter-TSS (NM_024095) promoter-TSS (NM_024095) -12 NM_024095 140461 Hs.432699 NM_024095 HPRD:10675 ASB8 - ankyrin repeat and SOCS box containing 8 protein-coding 13-PTNLD9-TUMOR_peak_37992 chr4 10782431 10782606 + 4.56030 NA Intergenic L1PA2|LINE|L1 -96132 NM_052964 116449 Hs.678910 NM_052964 CLNK MIST cytokine-dependent hematopoietic cell linker protein-coding 13-PTNLD9-TUMOR_peak_41115 chr5 67559847 67560083 + 4.56030 NA intron (NM_181523, intron 2 of 15) intron (NM_181523, intron 2 of 15) -24287 NM_181524 5295 Hs.132225 NM_181504 HPRD:01381 PIK3R1 AGM7|GRB1|p85|p85-ALPHA phosphoinositide-3-kinase, regulatory subunit 1 (alpha) protein-coding 13-PTNLD9-TUMOR_peak_35952 chr3 132378656 132378789 + 4.55103 NA promoter-TSS (NM_024818) promoter-TSS (NM_024818) 253 NM_032169 84129 Hs.441378 NM_032169 HPRD:13352 ACAD11 ACAD-11 acyl-CoA dehydrogenase family, member 11 protein-coding 13-PTNLD9-TUMOR_peak_8995 chr11 8986479 8986682 + 4.55103 NA promoter-TSS (NM_001286095) promoter-TSS (NM_001286095) -22 NM_001286095 56674 Hs.501853 NM_020644 HPRD:12603 TMEM9B C11orf15 TMEM9 domain family, member B protein-coding 13-PTNLD9-TUMOR_peak_52422 chr8 144360927 144361044 + 4.54749 NA Intergenic CpG 2885 NR_120682 100507316 Hs.446671 NR_120682 LOC100507316 - uncharacterized LOC100507316 ncRNA 13-PTNLD9-TUMOR_peak_4763 chr1 185253911 185254092 + 4.54006 NA intron (NM_017673, intron 18 of 18) LTR56|LTR|ERV1 32460 NM_006469 10625 Hs.497183 NM_006469 HPRD:10004 IVNS1ABP FLARA3|HSPC068|KLHL39|ND1|NS-1|NS1-BP|NS1BP influenza virus NS1A binding protein protein-coding 13-PTNLD9-TUMOR_peak_49327 chr7 138818212 138818306 + 4.54006 NA promoter-TSS (NM_001144923) promoter-TSS (NM_001144923) -231 NM_001144920 79989 Hs.133020 NM_024926 HPRD:07776 TTC26 DYF13|dyf-13 tetratricopeptide repeat domain 26 protein-coding 13-PTNLD9-TUMOR_peak_41092 chr5 66308214 66308353 + 4.54006 NA intron (NM_001290227, intron 2 of 25) intron (NM_001290227, intron 2 of 25) 7835 NM_001290227 375449 Hs.595458 NM_015183 HPRD:14195 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 13-PTNLD9-TUMOR_peak_35663 chr3 124834528 124834631 + 4.54006 NA intron (NM_024628, intron 8 of 13) intron (NM_024628, intron 8 of 13) 35817 NR_049815 100847039 NR_049815 MIR5092 - microRNA 5092 ncRNA 13-PTNLD9-TUMOR_peak_28372 chr2 128158235 128158354 + 4.54006 NA Intergenic Intergenic -17702 NM_000312 5624 Hs.224698 NM_000312 HPRD:01466 PROC APC|PC|PROC1|THPH3|THPH4 protein C (inactivator of coagulation factors Va and VIIIa) protein-coding 13-PTNLD9-TUMOR_peak_36691 chr3 170226254 170226360 + 4.54006 NA intron (NM_020949, intron 2 of 7) intron (NM_020949, intron 2 of 7) 77556 NM_020949 57709 Hs.596660 NM_020949 HPRD:17222 SLC7A14 PPP1R142 solute carrier family 7, member 14 protein-coding 13-PTNLD9-TUMOR_peak_24125 chr19 13318145 13318494 + 4.54006 NA exon (NM_001127222, exon 47 of 47) exon (NM_001127222, exon 47 of 47) 57037 NM_004907 9592 Hs.501629 NM_004907 HPRD:09997 IER2 ETR101 immediate early response 2 protein-coding 13-PTNLD9-TUMOR_peak_15460 chr14 31889127 31889390 + 4.54006 NA promoter-TSS (NR_110045) promoter-TSS (NR_110045) 530 NM_015473 25938 Hs.744979 NM_015473 ENSG00000129493 HEATR5A C14orf125 HEAT repeat containing 5A protein-coding 13-PTNLD9-TUMOR_peak_53043 chr9 33458570 33458689 + 4.53494 NA Intergenic Intergenic 9304 NR_106910 102465512 NR_106910 MIR6851 hsa-mir-6851 microRNA 6851 ncRNA 13-PTNLD9-TUMOR_peak_10819 chr11 85863396 85863568 + 4.53494 NA Intergenic Intergenic -82559 NM_001206947 8301 Hs.163893 NM_007166 HPRD:04320 PICALM CALM|CLTH|LAP phosphatidylinositol binding clathrin assembly protein protein-coding 13-PTNLD9-TUMOR_peak_40531 chr5 32093471 32093565 + 4.53494 NA intron (NM_178140, intron 20 of 23) intron (NM_178140, intron 20 of 23) 80907 NM_022130 64083 Hs.408909 NM_022130 HPRD:11007 GOLPH3 GOPP1|GPP34|MIDAS golgi phosphoprotein 3 (coat-protein) protein-coding 13-PTNLD9-TUMOR_peak_53144 chr9 36029867 36030029 + 4.53494 NA Intergenic Intergenic -6962 NM_021111 8434 Hs.388918 NM_021111 HPRD:05567 RECK ST15 reversion-inducing-cysteine-rich protein with kazal motifs protein-coding 13-PTNLD9-TUMOR_peak_21892 chr17 70122821 70122930 + 4.53494 NA TTS (NM_000346) TTS (NM_000346) 5714 NM_000346 6662 Hs.647409 NM_000346 HPRD:06427 SOX9 CMD1|CMPD1|SRA1 SRY (sex determining region Y)-box 9 protein-coding 13-PTNLD9-TUMOR_peak_11144 chr11 108442969 108443105 + 4.53494 NA intron (NM_015065, intron 1 of 5) intron (NM_015065, intron 1 of 5) 21337 NM_015065 23086 Hs.28540 NM_015065 HPRD:08341 EXPH5 SLAC2-B|SLAC2B exophilin 5 protein-coding 13-PTNLD9-TUMOR_peak_50235 chr8 21285803 21285923 + 4.53494 NA Intergenic Intergenic 130113 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 13-PTNLD9-TUMOR_peak_12654 chr12 47058883 47058977 + 4.53494 NA Intergenic L3|LINE|CR1 160850 NM_001143824 55089 Hs.446077 NM_018018 HPRD:12159 SLC38A4 ATA3|NAT3|PAAT solute carrier family 38, member 4 protein-coding 13-PTNLD9-TUMOR_peak_7452 chr10 61122222 61122364 + 4.53494 NA promoter-TSS (NM_001166698) promoter-TSS (NM_001166698) 59 NM_001001971 220965 Hs.607594 NM_198215 HPRD:16875 FAM13C FAM13C1 family with sequence similarity 13, member C protein-coding 13-PTNLD9-TUMOR_peak_667 chr1 23711941 23712099 + 4.53494 NA intron (NM_003196, intron 9 of 10) Tigger12c|DNA|TcMar-Tigger -15663 NM_001077195 80818 Hs.293798 NM_030634 HPRD:15793 ZNF436 ZNF|Zfp46 zinc finger protein 436 protein-coding 13-PTNLD9-TUMOR_peak_6910 chr10 34216371 34216499 + 4.53494 NA Intergenic Intergenic -154827 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 13-PTNLD9-TUMOR_peak_2772 chr1 110042379 110042566 + 4.53494 NA 3' UTR (NM_182580, exon 3 of 3) 3' UTR (NM_182580, exon 3 of 3) 5771 NM_182580 284613 Hs.514682 NM_182580 HPRD:09902 CYB561D1 - cytochrome b561 family, member D1 protein-coding 13-PTNLD9-TUMOR_peak_22572 chr18 10016063 10016238 + 4.53494 NA Intergenic Intergenic 102195 NM_003574 9218 Hs.165195 NM_003574 HPRD:09299 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP (vesicle-associated membrane protein)-associated protein A, 33kDa protein-coding 13-PTNLD9-TUMOR_peak_17356 chr15 58782820 58782990 + 4.53494 NA intron (NR_120338, intron 2 of 2) intron (NR_120338, intron 2 of 2) 8029 NR_120338 101928694 Hs.655781 NR_120338 ENSG00000259293 LOC101928694 - uncharacterized LOC101928694 ncRNA 13-PTNLD9-TUMOR_peak_35730 chr3 126243134 126243228 + 4.53494 NA promoter-TSS (NM_152889) promoter-TSS (NM_152889) 50 NM_152889 166012 Hs.292375 NM_152889 HPRD:13057 CHST13 C4ST3 carbohydrate (chondroitin 4) sulfotransferase 13 protein-coding 13-PTNLD9-TUMOR_peak_2604 chr1 98519639 98519915 + 4.53494 NA Intergenic CpG -4528 NR_046105 400765 Hs.451802 NM_001001688 HPRD:16937 MIR137HG - MIR137 host gene (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_3354 chr1 146374728 146374875 + 4.53301 NA intron (NM_001278141, intron 1 of 36) intron (NM_001278141, intron 1 of 36) 944 NM_001278141 149013 Hs.666981 NM_001278141 ENSG00000186275 NBPF12 COAS1|KIAA1245 neuroblastoma breakpoint family, member 12 protein-coding 13-PTNLD9-TUMOR_peak_54967 chr9 135995531 135995715 + 4.53268 NA intron (NM_001042368, intron 1 of 17) intron (NM_001042368, intron 1 of 17) 1014 NM_001271776 5900 Hs.106185 NM_006266 HPRD:03371 RALGDS RGDS|RGF|RalGEF ral guanine nucleotide dissociation stimulator protein-coding 13-PTNLD9-TUMOR_peak_50323 chr8 22857592 22857691 + 4.53268 NA intron (NM_015178, intron 1 of 9) CpG 549 NM_015178 23221 Hs.372688 NM_015178 HPRD:06300 RHOBTB2 DBC2 Rho-related BTB domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_13664 chr12 105477452 105477625 + 4.53268 NA intron (NM_001034173, intron 1 of 22) intron (NM_001034173, intron 1 of 22) 803 NR_027752 160428 Hs.42572 NM_001034173 HPRD:18742 ALDH1L2 mtFDH aldehyde dehydrogenase 1 family, member L2 protein-coding 13-PTNLD9-TUMOR_peak_35306 chr3 110383143 110383340 + 4.53268 NA Intergenic Intergenic 405565 NR_045114 100506555 Hs.535689 NR_045114 PVRL3-AS1 - PVRL3 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_51701 chr8 119121135 119121239 + 4.53268 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 2871 NM_000127 2131 Hs.492618 NM_000127 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_33335 chr22 41697531 41697625 + 4.53268 NA promoter-TSS (NM_017590) promoter-TSS (NM_017590) 71 NM_017590 23264 Hs.592188 NM_017590 HPRD:06711 ZC3H7B RoXaN zinc finger CCCH-type containing 7B protein-coding 13-PTNLD9-TUMOR_peak_26607 chr2 38002268 38002369 + 4.53268 NA Intergenic Intergenic 54536 NR_110011 101929559 Hs.468200 NR_110011 ENSG00000237803 LINC00211 NCRNA00211 long intergenic non-protein coding RNA 211 ncRNA 13-PTNLD9-TUMOR_peak_22404 chr18 267702 267799 + 4.53268 NA intron (NM_005131, intron 1 of 20) CpG 309 NM_005131 9984 Hs.712543 NM_005131 HPRD:09498 THOC1 HPR1|P84|P84N5 THO complex 1 protein-coding 13-PTNLD9-TUMOR_peak_24167 chr19 14186021 14186115 + 4.53268 NA TTS (NM_001291291) TTS (NM_001291291) 1895 NR_106715 102466515 NR_106715 MIR1199 hsa-mir-1199 microRNA 1199 ncRNA 13-PTNLD9-TUMOR_peak_37131 chr3 187829062 187829212 + 4.53268 NA Intergenic Intergenic -42524 NM_001167672 4026 Hs.720220 NM_005578 HPRD:02828 LPP - LIM domain containing preferred translocation partner in lipoma protein-coding 13-PTNLD9-TUMOR_peak_25652 chr19 55259248 55259342 + 4.53268 NA intron (NM_015868, intron 5 of 7) intron (NM_015868, intron 5 of 7) 9321 NM_015868 3804 Hs.654608 NM_014511 HPRD:10383 KIR2DL3 CD158B2|CD158b|GL183|KIR-023GB|KIR-K7b|KIR-K7c|KIR2DS5|KIRCL23|NKAT|NKAT2|NKAT2A|NKAT2B|p58 killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 3 protein-coding 13-PTNLD9-TUMOR_peak_19807 chr16 77598798 77598930 + 4.53268 NA Intergenic MER63A|DNA|hAT-Blackjack -129853 NM_199355 170692 Hs.188746 NM_139054 HPRD:06333 ADAMTS18 ADAMTS21|KNO2|MMCAT ADAM metallopeptidase with thrombospondin type 1 motif, 18 protein-coding 13-PTNLD9-TUMOR_peak_43749 chr6 10720628 10720833 + 4.52981 NA Intergenic LTR12C|LTR|ERV1 -2418 NM_016462 51522 Hs.519557 NM_016462 HPRD:15524 TMEM14C C6orf53|MSTP073|NET26|bA421M1.6 transmembrane protein 14C protein-coding 13-PTNLD9-TUMOR_peak_27011 chr2 61404141 61404235 + 4.52966 NA promoter-TSS (NM_152392) promoter-TSS (NM_152392) -367 NM_152392 130872 Hs.655602 NM_152392 HPRD:16479 AHSA2 Hch1 AHA1, activator of heat shock 90kDa protein ATPase homolog 2 (yeast) protein-coding 13-PTNLD9-TUMOR_peak_27 chr1 675952 676058 + 4.52435 NA Intergenic Intergenic -10274 NR_028327 100133331 Hs.733048 NR_028327 LOC100133331 - uncharacterized LOC100133331 ncRNA 13-PTNLD9-TUMOR_peak_5635 chr1 226309352 226309559 + 4.52082 NA Intergenic CpG 59027 NR_002315 440926 Hs.533624 NR_002315 ENSG00000235655 H3F3AP4 p13 H3 histone, family 3A, pseudogene 4 pseudo 13-PTNLD9-TUMOR_peak_34558 chr3 49703407 49703516 + 4.51596 NA intron (NM_003458, intron 11 of 11) intron (NM_003458, intron 11 of 11) -7974 NM_001640 327 Hs.517969 NM_001640 HPRD:00034 APEH AARE|ACPH|APH|D3F15S2|D3S48E|DNF15S2|OPH acylaminoacyl-peptide hydrolase protein-coding 13-PTNLD9-TUMOR_peak_17885 chr15 85524017 85524139 + 4.51596 NA intron (NM_001243137, intron 1 of 21) CpG 334 NM_001243137 5151 Hs.9333 NM_002605 HPRD:09114 PDE8A HsT19550 phosphodiesterase 8A protein-coding 13-PTNLD9-TUMOR_peak_28330 chr2 122993891 122993995 + 4.51596 NA Intergenic MLT1J2|LTR|ERVL-MaLR 480822 NR_048557 7247 Hs.75066 NM_004622 HPRD:08993 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 13-PTNLD9-TUMOR_peak_48533 chr7 100289408 100289554 + 4.51596 NA Intergenic Intergenic -2611 NM_022574 64599 Hs.414396 NM_022574 HPRD:10145 GIGYF1 GYF1|PERQ1 GRB10 interacting GYF protein 1 protein-coding 13-PTNLD9-TUMOR_peak_28572 chr2 136706229 136706401 + 4.51596 NA intron (NM_001293312, intron 3 of 14) AluSz|SINE|Alu -36431 NR_110200 101928243 Hs.602178 NR_110199 DARS-AS1 - DARS antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_49278 chr7 137439427 137439565 + 4.51588 NA intron (NM_004717, intron 1 of 33) intron (NM_004717, intron 1 of 33) 92113 NM_004717 9162 Hs.242947 NM_004717 HPRD:07238 DGKI DGK-IOTA diacylglycerol kinase, iota protein-coding 13-PTNLD9-TUMOR_peak_24142 chr19 13908751 13908923 + 4.51496 NA intron (NM_023072, intron 1 of 12) MER30|DNA|hAT-Charlie 2563 NM_023072 65249 Hs.466015 NM_023072 HPRD:15904 ZSWIM4 - zinc finger, SWIM-type containing 4 protein-coding 13-PTNLD9-TUMOR_peak_50968 chr8 55383037 55383162 + 4.51137 NA Intergenic CpG 12604 NM_022454 64321 Hs.98367 NM_022454 HPRD:18085 SOX17 VUR3 SRY (sex determining region Y)-box 17 protein-coding 13-PTNLD9-TUMOR_peak_45039 chr6 42662472 42662587 + 4.51137 NA Intergenic L1ME1|LINE|L1 27829 NM_000322 5961 Hs.654489 NM_000322 HPRD:01553 PRPH2 AOFMD|AVMD|CACD2|DS|PRPH|RDS|RP7|TSPAN22|rd2 peripherin 2 (retinal degeneration, slow) protein-coding 13-PTNLD9-TUMOR_peak_50821 chr8 46848457 46848703 + 4.50960 NA Intergenic ALR/Alpha|Satellite|centr -903928 NR_027012 497634 Hs.406982 NR_027012 ENSG00000253314 LINC00293 BEYLA|NCRNA00293 long intergenic non-protein coding RNA 293 ncRNA 13-PTNLD9-TUMOR_peak_23783 chr19 6516963 6517114 + 4.50724 NA Intergenic Intergenic -13972 NM_003811 8744 Hs.1524 NM_003811 HPRD:05861 TNFSF9 4-1BB-L|CD137L tumor necrosis factor (ligand) superfamily, member 9 protein-coding 13-PTNLD9-TUMOR_peak_33032 chr22 27870099 27870255 + 4.50724 NA Intergenic Intergenic 327309 NM_002430 4330 Hs.268515 NM_002430 HPRD:08862 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 meningioma (disrupted in balanced translocation) 1 protein-coding 13-PTNLD9-TUMOR_peak_16239 chr14 74208348 74208481 + 4.50724 NA intron (NM_001043318, intron 1 of 11) intron (NM_001043318, intron 1 of 11) -17036 NR_039727 100616158 NR_039727 miRBase:MI0016868 MIR4505 - microRNA 4505 ncRNA 13-PTNLD9-TUMOR_peak_18980 chr16 30210494 30210782 + 4.50674 NA promoter-TSS (NM_177552) promoter-TSS (NM_177552) 89 NM_177552 6818 Hs.460558 NM_003166 HPRD:07199 SULT1A3 HAST|HAST3|M-PST|ST1A3/ST1A4|ST1A5|STM|TL-PST sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3 protein-coding 13-PTNLD9-TUMOR_peak_52857 chr9 19496516 19496652 + 4.50487 NA Intergenic Intergenic 87659 NM_001010887 340485 Hs.41379 NM_001010887 ACER2 ALKCDase2|ASAH3L alkaline ceramidase 2 protein-coding 13-PTNLD9-TUMOR_peak_8368 chr10 115440620 115440748 + 4.50487 NA intron (NM_001267057, intron 1 of 6) intron (NM_001267057, intron 1 of 6) 1256 NM_033338 840 Hs.9216 NM_001227 HPRD:03457 CASP7 CASP-7|CMH-1|ICE-LAP3|LICE2|MCH3 caspase 7, apoptosis-related cysteine peptidase protein-coding 13-PTNLD9-TUMOR_peak_23640 chr19 1897597 1897777 + 4.50487 NA Intergenic Intergenic -7684 NM_138422 113179 Hs.144980 NM_138422 HPRD:14000 ADAT3 FWP005|MRT36|MST121|MSTP121|S863-5|TAD3 adenosine deaminase, tRNA-specific 3 protein-coding 13-PTNLD9-TUMOR_peak_41303 chr5 74532971 74533075 + 4.50487 NA promoter-TSS (NM_001164443) promoter-TSS (NM_001164443) -320 NM_001164443 256006 Hs.482533 NM_001164443 ENSG00000145700 ANKRD31 - ankyrin repeat domain 31 protein-coding 13-PTNLD9-TUMOR_peak_14447 chr13 25245961 25246228 + 4.50487 NA Intergenic MER53|DNA|hAT -8455 NM_001676 479 Hs.147111 NM_001676 HPRD:01667 ATP12A ATP1AL1 ATPase, H+/K+ transporting, nongastric, alpha polypeptide protein-coding 13-PTNLD9-TUMOR_peak_38725 chr4 82740502 82740726 + 4.50374 NA Intergenic Intergenic -347532 NM_001300736 153020 Hs.591696 NM_152545 HPRD:17955 RASGEF1B GPIG4 RasGEF domain family, member 1B protein-coding 13-PTNLD9-TUMOR_peak_22585 chr18 10520221 10520326 + 4.50374 NA Intergenic Intergenic -5600 NM_003826 8774 Hs.464622 NM_003826 HPRD:04448 NAPG GAMMASNAP N-ethylmaleimide-sensitive factor attachment protein, gamma protein-coding 13-PTNLD9-TUMOR_peak_19664 chr16 69745377 69745601 + 4.50374 NA intron (NM_001286137, intron 3 of 3) intron (NM_001286137, intron 3 of 3) 15044 NM_001025434 1728 Hs.406515 NM_000903 HPRD:00518 NQO1 DHQU|DIA4|DTD|NMOR1|NMORI|QR1 NAD(P)H dehydrogenase, quinone 1 protein-coding 13-PTNLD9-TUMOR_peak_26592 chr2 37572185 37572310 + 4.50374 NA intron (NM_012413, intron 1 of 6) CpG 494 NM_012413 25797 Hs.79033 NM_012413 HPRD:06140 QPCT GCT|QC|sQC glutaminyl-peptide cyclotransferase protein-coding 13-PTNLD9-TUMOR_peak_40454 chr5 17528784 17528889 + 4.50374 NA Intergenic Intergenic -141417 NR_033975 401177 Hs.508311 NR_033975 ENSG00000250822 LOC401177 - uncharacterized LOC401177 ncRNA 13-PTNLD9-TUMOR_peak_35799 chr3 127907365 127907459 + 4.50374 NA intron (NM_021937, intron 1 of 6) intron (NM_021937, intron 1 of 6) 35099 NM_021937 60678 Hs.477498 NM_021937 HPRD:07409 EEFSEC EFSEC|SELB eukaryotic elongation factor, selenocysteine-tRNA-specific protein-coding 13-PTNLD9-TUMOR_peak_28177 chr2 115482314 115482418 + 4.50374 NA intron (NM_001178036, intron 2 of 26) LTR51|LTR|ERV1 263186 NM_001178036 57628 Hs.580539 NM_020868 HPRD:07083 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl-peptidase 10 (non-functional) protein-coding 13-PTNLD9-TUMOR_peak_21628 chr17 56769904 56769998 + 4.50374 NA promoter-TSS (NM_002876) promoter-TSS (NM_002876) 17 NR_103872 5889 Hs.412587 NM_002876 HPRD:04143 RAD51C BROVCA3|FANCO|R51H3|RAD51L2 RAD51 paralog C protein-coding 13-PTNLD9-TUMOR_peak_13214 chr12 66932915 66933103 + 4.50374 NA intron (NM_021150, intron 3 of 23) intron (NM_021150, intron 3 of 23) 139916 NM_001178074 23426 Hs.505946 NM_021150 ENSG00000155974 GRIP1 GRIP glutamate receptor interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_45862 chr6 109103681 109103804 + 4.50374 NA Intergenic Intergenic 30885 NR_033376 387111 Hs.520310 NR_033376 ENSG00000203801 LINC00222 C6orf181|NCRNA00222|dJ354J5.2 long intergenic non-protein coding RNA 222 ncRNA 13-PTNLD9-TUMOR_peak_44488 chr6 30843979 30844103 + 4.50374 NA Intergenic Intergenic -6349 NM_001297652 780 Hs.631988 NM_001954 HPRD:02678 DDR1 CAK|CD167|DDR|EDDR1|HGK2|MCK10|NEP|NTRK4|PTK3|PTK3A|RTK6|TRKE discoidin domain receptor tyrosine kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_6918 chr10 34955382 34955539 + 4.50374 NA intron (NM_001184791, intron 2 of 20) intron (NM_001184791, intron 2 of 20) 148793 NM_001184791 56288 Hs.131489 NM_019619 HPRD:05994 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 13-PTNLD9-TUMOR_peak_24687 chr19 33634926 33635022 + 4.50374 NA intron (NM_173479, intron 2 of 10) MamGypLTR3|LTR|Gypsy 11976 NM_173479 126248 Hs.211046 NM_173479 HPRD:14033 WDR88 PQWD WD repeat domain 88 protein-coding 13-PTNLD9-TUMOR_peak_30452 chr20 13596184 13596435 + 4.50374 NA intron (NM_017714, intron 4 of 13) AluY|SINE|Alu 23274 NM_017714 55617 Hs.348297 NM_017714 HPRD:07460 TASP1 C20orf13|dJ585I14.2 taspase, threonine aspartase, 1 protein-coding 13-PTNLD9-TUMOR_peak_34818 chr3 63089158 63089287 + 4.50374 NA intron (NR_027104, intron 1 of 6) intron (NR_027104, intron 1 of 6) 858 NR_027104 285401 Hs.211125 NR_027104 ENSG00000244342 LINC00698 - long intergenic non-protein coding RNA 698 ncRNA 13-PTNLD9-TUMOR_peak_1506 chr1 44387636 44387738 + 4.50374 NA intron (NR_073016, intron 11 of 11) L2|LINE|L2 -11305 NM_001136215 9048 Hs.632404 NM_003976 HPRD:04863 ARTN ENOVIN|EVN|NBN artemin protein-coding 13-PTNLD9-TUMOR_peak_17355 chr15 58767864 58767959 + 4.50374 NA intron (NR_120338, intron 2 of 2) intron (NR_120338, intron 2 of 2) 23023 NR_120338 101928694 Hs.655781 NR_120338 ENSG00000259293 LOC101928694 - uncharacterized LOC101928694 ncRNA 13-PTNLD9-TUMOR_peak_47115 chr7 27135440 27135726 + 4.50374 NA promoter-TSS (NM_153620) promoter-TSS (NM_153620) 42 NM_005522 3198 Hs.67397 NM_005522 HPRD:00843 HOXA1 BSAS|HOX1|HOX1F homeobox A1 protein-coding 13-PTNLD9-TUMOR_peak_45982 chr6 121759610 121759802 + 4.50374 NA intron (NM_000165, intron 1 of 1) intron (NM_000165, intron 1 of 1) 2983 NM_000165 2697 Hs.74471 NM_000165 HPRD:00414 GJA1 AVSD3|CMDR|CX43|GJAL|HLHS1|HSS|ODDD gap junction protein, alpha 1, 43kDa protein-coding 13-PTNLD9-TUMOR_peak_23519 chr18 77050168 77050266 + 4.50374 NA intron (NM_198531, intron 13 of 29) L1PA3|LINE|L1 -105555 NM_001278669 4772 Hs.534074 NM_006162 HPRD:02729 NFATC1 NF-ATC|NFAT2|NFATc nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1 protein-coding 13-PTNLD9-TUMOR_peak_42495 chr5 145943667 145943789 + 4.50374 NA Intergenic Intergenic -48052 NM_194251 134391 Hs.483732 NM_194251 GPR151 GALR4|GALRL|GPCR|PGR7 G protein-coupled receptor 151 protein-coding 13-PTNLD9-TUMOR_peak_47959 chr7 74203885 74204010 + 4.50352 NA TTS (NM_000265) TTS (NM_000265) 15638 NM_000265 653361 Hs.647047 NM_000265 ENSG00000158517 NCF1 NCF1A|NOXO2|SH3PXD1A|p47phox neutrophil cytosolic factor 1 protein-coding 13-PTNLD9-TUMOR_peak_7556 chr10 69643971 69644119 + 4.50175 NA promoter-TSS (NM_001142498) promoter-TSS (NM_001142498) -382 NM_012238 23411 Hs.369779 NM_012238 HPRD:08381 SIRT1 SIR2L1 sirtuin 1 protein-coding 13-PTNLD9-TUMOR_peak_5371 chr1 212782025 212782119 + 4.50175 NA 5' UTR (NM_001674, exon 1 of 4) 5' UTR (NM_001674, exon 1 of 4) 102 NM_001206488 467 Hs.460 NM_001674 HPRD:04395 ATF3 - activating transcription factor 3 protein-coding 13-PTNLD9-TUMOR_peak_46675 chr7 1209188 1209316 + 4.49218 NA Intergenic Intergenic 8831 NR_110070 101927021 Hs.529566 NR_110065 LOC101927021 - uncharacterized LOC101927021 ncRNA 13-PTNLD9-TUMOR_peak_38921 chr4 97086343 97086437 + 4.49218 NA Intergenic UCON10|Unknown|Unknown 325151 NM_005390 5161 Hs.131361 NM_005390 HPRD:01531 PDHA2 PDHAL pyruvate dehydrogenase (lipoamide) alpha 2 protein-coding 13-PTNLD9-TUMOR_peak_52358 chr8 142386433 142386585 + 4.49218 NA Intergenic Intergenic -9144 NM_005293 2843 Hs.188859 NM_005293 HPRD:03550 GPR20 - G protein-coupled receptor 20 protein-coding 13-PTNLD9-TUMOR_peak_21939 chr17 72510555 72510775 + 4.48606 NA Intergenic (ATGTG)n|Simple_repeat|Simple_repeat 16948 NM_174892 124599 Hs.313343 NM_174892 HPRD:18223 CD300LB CD300b|CLM-7|CLM7|CMRF35-A2|IREM-3|IREM3|TREM-5|TREM5 CD300 molecule-like family member b protein-coding 13-PTNLD9-TUMOR_peak_42289 chr5 139124799 139125141 + 4.48606 NA intron (NR_105053, intron 1 of 2) intron (NR_105053, intron 1 of 2) 838 NR_105052 101929696 Hs.147408 NR_105052 ENSG00000249131 LOC101929696 - uncharacterized LOC101929696 ncRNA 13-PTNLD9-TUMOR_peak_43292 chr5 179061054 179061228 + 4.48606 NA Intergenic LTR16E2|LTR|ERVL -10419 NM_005520 3187 Hs.604001 NM_005520 HPRD:03021 HNRNPH1 HNRPH|HNRPH1|hnRNPH heterogeneous nuclear ribonucleoprotein H1 (H) protein-coding 13-PTNLD9-TUMOR_peak_23606 chr19 1177778 1178010 + 4.48606 NA Intergenic Intergenic -3612 NM_014963 22904 Hs.408708 NM_014963 HPRD:17203 SBNO2 KIAA0963|SNO|STNO strawberry notch homolog 2 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_48105 chr7 77325999 77326159 + 4.48273 NA non-coding (NR_038361, exon 1 of 3) non-coding (NR_038361, exon 1 of 3) 336 NM_198467 222194 Hs.72451 NM_198467 RSBN1L - round spermatid basic protein 1-like protein-coding 13-PTNLD9-TUMOR_peak_10232 chr11 65323200 65323401 + 4.48168 NA intron (NM_001164266, intron 1 of 26) intron (NM_001164266, intron 1 of 26) 2399 NM_001130144 4054 Hs.289019 NM_021070 HPRD:03649 LTBP3 LTBP-3|LTBP2|STHAG6|pp6425 latent transforming growth factor beta binding protein 3 protein-coding 13-PTNLD9-TUMOR_peak_11194 chr11 111605894 111606127 + 4.48168 NA intron (NM_181699, intron 15 of 15) intron (NM_181699, intron 15 of 15) 31159 NM_001177562 5519 Hs.269128 NM_002716 HPRD:04384 PPP2R1B PP2A-Abeta|PR65B protein phosphatase 2, regulatory subunit A, beta protein-coding 13-PTNLD9-TUMOR_peak_1325 chr1 41177205 41177342 + 4.48168 NA intron (NM_001142590, intron 2 of 14) intron (NM_001142590, intron 2 of 14) -19340 NR_024567 100130557 Hs.233458 NR_024567 NFYC-AS1 0808y08y NFYC antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_16628 chr14 103540157 103540251 + 4.48168 NA Intergenic Intergenic -16462 NM_006035 9578 Hs.654634 NM_006035 HPRD:08516 CDC42BPB MRCKB CDC42 binding protein kinase beta (DMPK-like) protein-coding 13-PTNLD9-TUMOR_peak_42091 chr5 133463759 133463946 + 4.48168 NA intron (NR_033449, intron 1 of 7) intron (NR_033449, intron 1 of 7) 12502 NR_033449 6932 Hs.573153 NM_003202 HPRD:01797 TCF7 TCF-1 transcription factor 7 (T-cell specific, HMG-box) protein-coding 13-PTNLD9-TUMOR_peak_22468 chr18 3540977 3541108 + 4.47780 NA intron (NM_001242764, intron 6 of 9) intron (NM_001242764, intron 6 of 9) -53070 NR_024101 649446 Hs.19872 NM_001039796 DLGAP1-AS1 HsT914 DLGAP1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_43925 chr6 15907018 15907123 + 4.47780 NA Intergenic Intergenic -222247 NM_013262 29116 Hs.484738 NM_013262 HPRD:17621 MYLIP IDOL|MIR myosin regulatory light chain interacting protein protein-coding 13-PTNLD9-TUMOR_peak_9457 chr11 33483354 33483555 + 4.47780 NA Intergenic Intergenic -80423 NM_012194 25758 Hs.502266 NM_012194 ENSG00000110427 KIAA1549L C11orf41|C11orf69|G2 KIAA1549-like protein-coding 13-PTNLD9-TUMOR_peak_23283 chr18 55862751 55862907 + 4.47780 NA 5' UTR (NM_001144970, exon 1 of 29) 5' UTR (NM_001144970, exon 1 of 29) 207 NM_001144970 23327 Hs.185677 NM_015277 HPRD:05903 NEDD4L NEDD4-2|NEDD4.2|RSP5|hNEDD4-2 neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_27821 chr2 100900716 100900878 + 4.47780 NA exon (NM_198461, exon 12 of 12) exon (NM_198461, exon 12 of 12) 38398 NM_198461 164832 Hs.21380 NM_198461 HPRD:13503 LONRF2 RNF192 LON peptidase N-terminal domain and ring finger 2 protein-coding 13-PTNLD9-TUMOR_peak_33966 chr3 16219976 16220070 + 4.47780 NA intron (NM_054110, intron 1 of 9) intron (NM_054110, intron 1 of 9) 3839 NM_054110 117248 Hs.411308 NM_054110 HPRD:13563 GALNT15 GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5 polypeptide N-acetylgalactosaminyltransferase 15 protein-coding 13-PTNLD9-TUMOR_peak_23153 chr18 47139783 47139940 + 4.47780 NA Intergenic Intergenic 51434 NM_006033 9388 Hs.465102 NM_006033 HPRD:04730 LIPG EDL|EL|PRO719 lipase, endothelial protein-coding 13-PTNLD9-TUMOR_peak_24193 chr19 14618605 14618740 + 4.47776 NA Intergenic Intergenic 10002 NM_001300914 3337 Hs.515210 NM_006145 HPRD:05198 DNAJB1 HSPF1|Hdj1|Hsp40|RSPH16B|Sis1 DnaJ (Hsp40) homolog, subfamily B, member 1 protein-coding 13-PTNLD9-TUMOR_peak_52518 chr8 145550852 145551005 + 4.47590 NA promoter-TSS (NM_012079) promoter-TSS (NM_012079) -346 NM_012079 8694 Hs.521954 NM_012079 DGAT1 ARAT|ARGP1|DGAT|DIAR7 diacylglycerol O-acyltransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_16920 chr15 30865278 30865446 + 4.47466 NA intron (NR_026858, intron 2 of 4) CpG-7693 604 NR_026858 89838 Hs.574255 NR_026858 ENSG00000261279 ULK4P1 D-X|FAM7A1 ULK4 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_2553 chr1 94993123 94993472 + 4.47229 NA Intergenic Intergenic 14116 NM_001178096 2152 Hs.62192 NM_001993 HPRD:00603 F3 CD142|TF|TFA coagulation factor III (thromboplastin, tissue factor) protein-coding 13-PTNLD9-TUMOR_peak_56437 chrX 122937393 122937497 + 4.47229 NA Intergenic Intergenic -56217 NM_001204401 331 Hs.356076 NM_001167 HPRD:02094 XIAP API3|BIRC4|IAP-3|ILP1|MIHA|XLP2|hIAP-3|hIAP3 X-linked inhibitor of apoptosis protein-coding 13-PTNLD9-TUMOR_peak_59 chr1 1057611 1057720 + 4.47229 NA Intergenic Intergenic -5929 NM_017891 54991 Hs.235095 NM_017891 HPRD:07930 C1orf159 - chromosome 1 open reading frame 159 protein-coding 13-PTNLD9-TUMOR_peak_31261 chr20 45753562 45753842 + 4.47229 NA intron (NM_005244, intron 9 of 15) AluY|SINE|Alu -41907 NR_037410 100500814 NR_037410 MIR3616 - microRNA 3616 ncRNA 13-PTNLD9-TUMOR_peak_34615 chr3 50676640 50676879 + 4.47229 NA intron (NM_001243925, intron 2 of 10) intron (NM_001243925, intron 2 of 10) 22197 NM_001243925 7867 Hs.234521 NM_004635 HPRD:03678 MAPKAPK3 3PK|MAPKAP-K3|MAPKAP3|MAPKAPK-3|MK-3 mitogen-activated protein kinase-activated protein kinase 3 protein-coding 13-PTNLD9-TUMOR_peak_1160 chr1 37051414 37051568 + 4.47229 NA Intergenic Intergenic -102576 NM_156039 1441 Hs.524517 NM_000760 HPRD:00737 CSF3R CD114|GCSFR colony stimulating factor 3 receptor (granulocyte) protein-coding 13-PTNLD9-TUMOR_peak_29380 chr2 192053939 192054178 + 4.47229 NA Intergenic Intergenic -37736 NM_001243835 6775 Hs.80642 NM_003151 HPRD:02779 STAT4 SLEB11 signal transducer and activator of transcription 4 protein-coding 13-PTNLD9-TUMOR_peak_48795 chr7 107599276 107599443 + 4.47229 NA intron (NM_002291, intron 20 of 33) intron (NM_002291, intron 20 of 33) 44445 NM_002291 3912 Hs.650585 NM_002291 HPRD:01029 LAMB1 CLM|LIS5 laminin, beta 1 protein-coding 13-PTNLD9-TUMOR_peak_35800 chr3 127907925 127908052 + 4.47229 NA intron (NM_021937, intron 1 of 6) intron (NM_021937, intron 1 of 6) 35675 NM_021937 60678 Hs.477498 NM_021937 HPRD:07409 EEFSEC EFSEC|SELB eukaryotic elongation factor, selenocysteine-tRNA-specific protein-coding 13-PTNLD9-TUMOR_peak_17231 chr15 45941215 45941358 + 4.47229 NA intron (NM_021199, intron 1 of 9) intron (NM_021199, intron 1 of 9) 14348 NM_021199 58472 Hs.511251 NM_021199 HPRD:18102 SQRDL PRO1975 sulfide quinone reductase-like (yeast) protein-coding 13-PTNLD9-TUMOR_peak_28678 chr2 149055877 149055986 + 4.47229 NA intron (NM_018328, intron 4 of 14) L1MB7|LINE|L1 -276758 NM_181742 5000 Hs.558364 NM_002552 HPRD:09118 ORC4 ORC4L|ORC4P origin recognition complex, subunit 4 protein-coding 13-PTNLD9-TUMOR_peak_51558 chr8 107467813 107467959 + 4.47229 NA intron (NM_001198532, intron 1 of 15) intron (NM_001198532, intron 1 of 15) 7734 NM_001198532 55074 Hs.127286 NM_018002 HPRD:16126 OXR1 TLDC3 oxidation resistance 1 protein-coding 13-PTNLD9-TUMOR_peak_36473 chr3 155869759 155869871 + 4.47229 NA intron (NM_003471, intron 1 of 13) intron (NM_003471, intron 1 of 13) 9064 NM_003471 7881 Hs.654519 NM_003471 HPRD:03089 KCNAB1 AKR6A3|KCNA1B|KV-BETA-1|Kvb1.3|hKvBeta3|hKvb3 potassium voltage-gated channel, shaker-related subfamily, beta member 1 protein-coding 13-PTNLD9-TUMOR_peak_11889 chr12 4933718 4933819 + 4.47229 NA intron (NM_002235, intron 1 of 1) intron (NM_002235, intron 1 of 1) 15426 NM_002235 3742 Hs.306190 NM_002235 HPRD:08884 KCNA6 HBK2|KV1.6|PPP1R96 potassium voltage-gated channel, shaker-related subfamily, member 6 protein-coding 13-PTNLD9-TUMOR_peak_7480 chr10 62492997 62493295 + 4.47229 NA 5' UTR (NM_001204403, exon 1 of 44) 5' UTR (NM_001204403, exon 1 of 44) 138 NM_001204403 288 Hs.499725 NM_001149 HPRD:02715 ANK3 ANKYRIN-G|MRT37 ankyrin 3, node of Ranvier (ankyrin G) protein-coding 13-PTNLD9-TUMOR_peak_11259 chr11 113545835 113546077 + 4.47229 NA Intergenic Intergenic 31139 NR_110047 80975 Hs.46720 NM_030770 HPRD:05995 TMPRSS5 SPINESIN transmembrane protease, serine 5 protein-coding 13-PTNLD9-TUMOR_peak_7326 chr10 50261203 50261297 + 4.47229 NA intron (NM_001031746, intron 5 of 7) intron (NM_001031746, intron 5 of 7) 62327 NM_144984 196740 Hs.522928 NM_144984 HPRD:08503 VSTM4 C10orf72 V-set and transmembrane domain containing 4 protein-coding 13-PTNLD9-TUMOR_peak_13288 chr12 70049825 70049979 + 4.47229 NA intron (NM_032735, intron 9 of 9) Charlie1|DNA|hAT-Charlie 33155 NM_152439 144453 Hs.280782 NM_032735 HPRD:17484 BEST3 VMD2L3 bestrophin 3 protein-coding 13-PTNLD9-TUMOR_peak_40090 chr4 190757193 190757287 + 4.46832 NA Intergenic (CCA)n|Simple_repeat|Simple_repeat -104734 NM_004477 2483 Hs.203772 NM_004477 HPRD:03176 FRG1 FRG1A|FSG1 FSHD region gene 1 protein-coding 13-PTNLD9-TUMOR_peak_21749 chr17 61946972 61947098 + 4.46832 NA Intergenic MER5B|DNA|hAT-Charlie 4054 NM_020991 1443 Hs.654515 NM_020991 HPRD:06688 CSH2 CS-2|CSB|PL|hCS-B chorionic somatomammotropin hormone 2 protein-coding 13-PTNLD9-TUMOR_peak_40586 chr5 34660720 34660833 + 4.46832 NA intron (NM_001145520, intron 1 of 17) intron (NM_001145520, intron 1 of 17) 4180 NM_001145520 26064 Hs.431400 NM_015577 HPRD:09416 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 13-PTNLD9-TUMOR_peak_13639 chr12 104576124 104576229 + 4.46832 NA Intergenic LTR42|LTR|ERVL -33381 NM_001093771 7296 Hs.654922 NM_003330 HPRD:03068 TXNRD1 GRIM-12|TR|TR1|TRXR1|TXNR thioredoxin reductase 1 protein-coding 13-PTNLD9-TUMOR_peak_689 chr1 24285558 24285720 + 4.46832 NA promoter-TSS (NM_017761) promoter-TSS (NM_017761) -662 NM_017761 55629 Hs.7862 NM_017761 HPRD:17871 PNRC2 - proline-rich nuclear receptor coactivator 2 protein-coding 13-PTNLD9-TUMOR_peak_47145 chr7 29153308 29153418 + 4.46832 NA intron (NM_031311, intron 2 of 12) intron (NM_031311, intron 2 of 12) -11286 NR_120523 101928168 Hs.666750 NR_120523 LOC101928168 - uncharacterized LOC101928168 ncRNA 13-PTNLD9-TUMOR_peak_54920 chr9 132961964 132962105 + 4.46832 NA promoter-TSS (NM_001128826) promoter-TSS (NM_001128826) -838 NM_001128826 23413 Hs.642946 NM_014286 HPRD:04500 NCS1 FLUP|FREQ neuronal calcium sensor 1 protein-coding 13-PTNLD9-TUMOR_peak_18461 chr16 9540804 9540945 + 4.46832 NA Intergenic Intergenic 117374 NR_106988 102465753 NR_106988 MIR7641-2 B-ATF|hsa-mir-7641-2 microRNA 7641-2 ncRNA 13-PTNLD9-TUMOR_peak_43343 chr5 180258374 180258668 + 4.46832 NA promoter-TSS (NR_045680) promoter-TSS (NR_045680) 97 NR_045680 100859930 Hs.655606 NR_045680 HEIH HCCAT2|LINC-HEIH|LINC00848|lncRNA-HEIH hepatocellular carcinoma up-regulated EZH2-associated long non-coding RNA ncRNA 13-PTNLD9-TUMOR_peak_40091 chr4 190757543 190757756 + 4.46832 NA Intergenic Intergenic -104325 NM_004477 2483 Hs.203772 NM_004477 HPRD:03176 FRG1 FRG1A|FSG1 FSHD region gene 1 protein-coding 13-PTNLD9-TUMOR_peak_23614 chr19 1253262 1253412 + 4.46799 NA intron (NM_177401, intron 4 of 7) intron (NM_177401, intron 4 of 7) 4785 NM_177401 90007 Hs.465529 NM_177401 HPRD:16230 MIDN - midnolin protein-coding 13-PTNLD9-TUMOR_peak_25697 chr19 55998698 55998868 + 4.46799 NA 3' UTR (NM_020378, exon 3 of 3) 3' UTR (NM_020378, exon 3 of 3) -1087 NM_001144950 284297 Hs.554182 NM_182571 HPRD:11444 SSC5D - scavenger receptor cysteine rich family, 5 domains protein-coding 13-PTNLD9-TUMOR_peak_9719 chr11 47238124 47238226 + 4.46679 NA intron (NM_001300734, intron 2 of 5) intron (NM_001300734, intron 2 of 5) 1682 NM_001300734 1643 Hs.700338 NM_000107 HPRD:02886 DDB2 DDBB|UV-DDB2 damage-specific DNA binding protein 2, 48kDa protein-coding 13-PTNLD9-TUMOR_peak_50108 chr8 12324002 12324221 + 4.46495 NA intron (NR_040092, intron 4 of 5) HERVK-int|LTR|ERVK 29589 NR_040092 100506990 Hs.656893 NR_040091 LOC100506990 - uncharacterized LOC100506990 ncRNA 13-PTNLD9-TUMOR_peak_43943 chr6 16335075 16335192 + 4.46495 NA intron (NM_001128164, intron 6 of 7) L3|LINE|CR1 96322 NM_006877 2766 Hs.484741 NM_006877 HPRD:00754 GMPR GMPR1 guanosine monophosphate reductase protein-coding 13-PTNLD9-TUMOR_peak_4274 chr1 166458931 166459227 + 4.46495 NA Intergenic L2a|LINE|L2 -114074 NR_002925 116123 Hs.348539 NM_138784 HPRD:14011 FMO9P - flavin containing monooxygenase 9 pseudogene pseudo 13-PTNLD9-TUMOR_peak_10606 chr11 73667415 73667538 + 4.46495 NA intron (NM_153614, intron 1 of 7) intron (NM_153614, intron 1 of 7) 6112 NM_153614 374407 Hs.567888 NM_153614 HPRD:15573 DNAJB13 RSPH16A|TSARG5|TSARG6 DnaJ (Hsp40) homolog, subfamily B, member 13 protein-coding 13-PTNLD9-TUMOR_peak_15951 chr14 61747393 61747542 + 4.45821 NA exon (NM_001017970, exon 1 of 1) exon (NM_001017970, exon 1 of 1) 1063 NM_001017970 161291 Hs.146180 NM_001017970 HPRD:18567 TMEM30B CDC50B transmembrane protein 30B protein-coding 13-PTNLD9-TUMOR_peak_55295 chrUn_gl000220 158547 158938 + 4.45608 NA Intergenic LSU-rRNA_Hsa|rRNA|rRNA 2745 NR_003285 100008587 NR_003285 RNA5-8S5 RN5-8S1 RNA, 5.8S ribosomal 5 rRNA 13-PTNLD9-TUMOR_peak_19214 chr16 46405283 46405599 + 4.45568 NA Intergenic HSATII|Satellite|Satellite 197568 NR_026556 124149 Hs.97414 NM_001004299 ANKRD26P1 - ankyrin repeat domain 26 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_3288 chr1 145208702 145208801 + 4.45098 NA promoter-TSS (NM_203458) promoter-TSS (NM_203458) -362 NM_203458 388677 Hs.655156 NM_203458 HPRD:14833 NOTCH2NL N2N notch 2 N-terminal like protein-coding 13-PTNLD9-TUMOR_peak_17489 chr15 67341069 67341288 + 4.45073 NA Intergenic Intergenic -17017 NM_005902 4088 Hs.727986 NM_005902 HPRD:04380 SMAD3 HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3 SMAD family member 3 protein-coding 13-PTNLD9-TUMOR_peak_26632 chr2 38670156 38670250 + 4.45073 NA Intergenic Intergenic -65771 NR_024191 64225 Hs.727652 NM_022374 HPRD:10662 ATL2 ARL3IP2|ARL6IP2|atlastin2 atlastin GTPase 2 protein-coding 13-PTNLD9-TUMOR_peak_2169 chr1 69169626 69169758 + 4.45073 NA Intergenic L2b|LINE|L2 -206788 NM_001114120 55635 Hs.445098 NM_017779 HPRD:10879 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_14762 chr13 50571390 50571542 + 4.45073 NA promoter-TSS (NR_037407) promoter-TSS (NR_037407) 323 NM_052811 10206 Hs.436922 NM_005798 HPRD:10414 TRIM13 CAR|DLEU5|LEU5|RFP2|RNF77 tripartite motif containing 13 protein-coding 13-PTNLD9-TUMOR_peak_53089 chr9 34702179 34702364 + 4.45073 NA Intergenic Intergenic 7893 NM_002989 6366 Hs.57907 NM_002989 HPRD:04113 CCL21 6Ckine|CKb9|ECL|SCYA21|SLC|TCA4 chemokine (C-C motif) ligand 21 protein-coding 13-PTNLD9-TUMOR_peak_5718 chr1 228651967 228652162 + 4.45073 NA Intergenic CpG 2289 NR_039812 100616308 NR_039812 miRBase:MI0017296 MIR4666A MIR4666|hsa-mir-4666a microRNA 4666a ncRNA 13-PTNLD9-TUMOR_peak_17673 chr15 75339575 75339693 + 4.45073 NA intron (NM_001301104, intron 2 of 3) intron (NM_001301104, intron 2 of 3) 4024 NM_001301105 60490 Hs.458922 NM_021823 HPRD:14377 PPCDC PPC-DC|coaC phosphopantothenoylcysteine decarboxylase protein-coding 13-PTNLD9-TUMOR_peak_5653 chr1 226844777 226844974 + 4.45073 NA non-coding (NR_103784, exon 2 of 2) non-coding (NR_103784, exon 2 of 2) 17894 NR_103784 100506443 Hs.664293 NR_103784 ITPKB-IT1 - ITPKB intronic transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_39025 chr4 107343265 107343392 + 4.45073 NA Intergenic L2c|LINE|L2 -54736 NM_001195138 100507096 Hs.722750 NM_001195138 GIMD1 - GIMAP family P-loop NTPase domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_40159 chr5 782480 782651 + 4.45009 NA Intergenic Intergenic 68536 NM_024786 79844 Hs.732788 NM_024786 HPRD:15708 ZDHHC11 ZNF399 zinc finger, DHHC-type containing 11 protein-coding 13-PTNLD9-TUMOR_peak_10195 chr11 64884416 64884525 + 4.45009 NA TTS (NM_003273) TTS (NM_003273) 700 NM_014205 741 Hs.121025 NM_014205 HPRD:05200 ZNHIT2 C11orf5|FON zinc finger, HIT-type containing 2 protein-coding 13-PTNLD9-TUMOR_peak_9875 chr11 57092957 57093344 + 4.45009 NA promoter-TSS (NM_033396) promoter-TSS (NM_033396) -737 NM_033396 85456 Hs.530730 NM_033396 HPRD:06164 TNKS1BP1 TAB182 tankyrase 1 binding protein 1, 182kDa protein-coding 13-PTNLD9-TUMOR_peak_29130 chr2 174856105 174856204 + 4.44398 NA Intergenic Intergenic -25724 NM_003111 6670 Hs.531587 NM_003111 HPRD:03483 SP3 SPR2 Sp3 transcription factor protein-coding 13-PTNLD9-TUMOR_peak_49183 chr7 134137199 134137370 + 4.44398 NA intron (NM_001628, intron 1 of 9) intron (NM_001628, intron 1 of 9) 6604 NM_001628 231 Hs.521212 NM_001628 HPRD:00071 AKR1B1 ADR|ALDR1|ALR2|AR aldo-keto reductase family 1, member B1 (aldose reductase) protein-coding 13-PTNLD9-TUMOR_peak_35350 chr3 111642806 111643011 + 4.44398 NA intron (NM_001134437, intron 6 of 17) L2b|LINE|L2 -54815 NM_018394 55347 Hs.477115 NM_018394 HPRD:07751 ABHD10 - abhydrolase domain containing 10 protein-coding 13-PTNLD9-TUMOR_peak_4632 chr1 181110621 181111001 + 4.44398 NA Intergenic Intergenic 53173 NM_016545 51278 Hs.15725 NM_016545 HPRD:06210 IER5 SBBI48 immediate early response 5 protein-coding 13-PTNLD9-TUMOR_peak_34030 chr3 20295904 20296003 + 4.44324 NA Intergenic L1P3|LINE|L1 -68229 NM_001199256 151648 Hs.105153 NM_138484 HPRD:12377 SGOL1 NY-BR-85|SGO|Sgo1 shugoshin-like 1 (S. pombe) protein-coding 13-PTNLD9-TUMOR_peak_34096 chr3 24536444 24536735 + 4.44310 NA promoter-TSS (NM_000461) promoter-TSS (NM_000461) -276 NM_001252634 7068 Hs.187861 NM_000461 HPRD:07521 THRB C-ERBA-2|C-ERBA-BETA|ERBA2|GRTH|NR1A2|PRTH|THR1|THRB1|THRB2 thyroid hormone receptor, beta protein-coding 13-PTNLD9-TUMOR_peak_25049 chr19 42278539 42278709 + 4.44140 NA Intergenic Intergenic 19196 NM_002483 4680 Hs.466814 NM_002483 HPRD:01233 CEACAM6 CD66c|CEAL|NCA carcinoembryonic antigen-related cell adhesion molecule 6 (non-specific cross reacting antigen) protein-coding 13-PTNLD9-TUMOR_peak_14343 chr12 132638456 132638560 + 4.44140 NA Intergenic Intergenic 9515 NM_024078 79050 Hs.558536 NM_024078 HPRD:14543 NOC4L NET49|NOC4|UTP19 nucleolar complex associated 4 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_8041 chr10 95462183 95462412 + 4.44140 NA promoter-TSS (NM_145246) promoter-TSS (NM_145246) 32 NM_145246 118924 Hs.586650 NM_145246 HPRD:12319 FRA10AC1 C10orf4|F26C11.1-like|FRA10A fragile site, folic acid type, rare, fra(10)(q23.3) or fra(10)(q24.2) candidate 1 protein-coding 13-PTNLD9-TUMOR_peak_28227 chr2 119769177 119769362 + 4.44140 NA Intergenic CpG 69524 NM_006770 8685 Hs.67726 NM_006770 HPRD:05337 MARCO SCARA2 macrophage receptor with collagenous structure protein-coding 13-PTNLD9-TUMOR_peak_5377 chr1 213224541 213224725 + 4.44140 NA promoter-TSS (NM_001287218) promoter-TSS (NM_001287218) 58 NM_001287219 26750 Hs.591416 NM_012424 HPRD:10204 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase, 52kDa, polypeptide 1 protein-coding 13-PTNLD9-TUMOR_peak_44977 chr6 41506521 41506626 + 4.44140 NA Intergenic MIRb|SINE|MIR -7591 NM_001012426 116113 Hs.131436 NM_138457 HPRD:10600 FOXP4 hFKHLA forkhead box P4 protein-coding 13-PTNLD9-TUMOR_peak_8245 chr10 105014773 105014913 + 4.44140 NA Intergenic FLAM_A|SINE|Alu 9199 NM_001143909 729020 Hs.458437 NM_001143909 ENSG00000235376 RPEL1 - ribulose-5-phosphate-3-epimerase-like 1 protein-coding 13-PTNLD9-TUMOR_peak_54087 chr9 97890036 97890136 + 4.44140 NA intron (NM_000136, intron 8 of 14) intron (NM_000136, intron 8 of 14) -41710 NR_036109 100422842 NR_036109 miRBase:MI0014181 MIR3074 - microRNA 3074 ncRNA 13-PTNLD9-TUMOR_peak_672 chr1 23866379 23866652 + 4.44140 NA Intergenic Intergenic -8803 NM_004091 1870 Hs.194333 NM_004091 HPRD:02692 E2F2 E2F-2 E2F transcription factor 2 protein-coding 13-PTNLD9-TUMOR_peak_53224 chr9 38500205 38500418 + 4.44140 NA Intergenic Intergenic 45058 NR_047651 100289137 Hs.732599 NR_047651 FAM95C - family with sequence similarity 95, member C ncRNA 13-PTNLD9-TUMOR_peak_18185 chr16 1069578 1069692 + 4.44140 NA Intergenic CpG 37827 NM_014587 30812 Hs.243678 NM_014587 HPRD:16175 SOX8 - SRY (sex determining region Y)-box 8 protein-coding 13-PTNLD9-TUMOR_peak_51658 chr8 117396583 117396869 + 4.44140 NA Intergenic Intergenic -59429 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 13-PTNLD9-TUMOR_peak_17240 chr15 47458198 47458337 + 4.44140 NA Intergenic L1PA2|LINE|L1 -18136 NM_001198999 80031 Hs.511265 NM_020858 HPRD:10221 SEMA6D - sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D protein-coding 13-PTNLD9-TUMOR_peak_7721 chr10 73869246 73869383 + 4.44140 NA intron (NM_001198799, intron 10 of 12) intron (NM_001198799, intron 10 of 12) -20524 NM_001134434 9806 Hs.523009 NM_014767 HPRD:12146 SPOCK2 testican-2 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2 protein-coding 13-PTNLD9-TUMOR_peak_610 chr1 21023336 21023535 + 4.44140 NA intron (NM_001287212, intron 6 of 14) intron (NM_001287212, intron 6 of 14) 21075 NM_020816 57576 Hs.130411 NM_020816 HPRD:10388 KIF17 KIF17B|KIF3X|KLP-2|OSM-3 kinesin family member 17 protein-coding 13-PTNLD9-TUMOR_peak_34976 chr3 72957162 72957291 + 4.44140 NA intron (NM_001080393, intron 1 of 6) intron (NM_001080393, intron 1 of 6) 19841 NM_001080393 727936 Hs.710275 NM_001080393 GXYLT2 GLT8D4 glucoside xylosyltransferase 2 protein-coding 13-PTNLD9-TUMOR_peak_804 chr1 27357903 27358400 + 4.44140 NA Intergenic Intergenic -18818 NM_052943 115572 Hs.632378 NM_052943 HPRD:16882 FAM46B - family with sequence similarity 46, member B protein-coding 13-PTNLD9-TUMOR_peak_22028 chr17 73841328 73841519 + 4.44103 NA promoter-TSS (NM_199242) promoter-TSS (NM_199242) -625 NM_199242 201294 Hs.41045 NM_199242 HPRD:10598 UNC13D FHL3|HLH3|HPLH3|Munc13-4 unc-13 homolog D (C. elegans) protein-coding 13-PTNLD9-TUMOR_peak_21256 chr17 44364372 44364515 + 4.43401 NA Intergenic Intergenic -8054 NM_014834 9884 Hs.579108 NM_014834 HPRD:14303 LRRC37A LRRC37 leucine rich repeat containing 37A protein-coding 13-PTNLD9-TUMOR_peak_49516 chr7 143894141 143894276 + 4.42951 NA Intergenic Intergenic -1417 NM_001003702 445328 Hs.534621 NM_001003702 HPRD:13476 ARHGEF35 ARHGEF5L Rho guanine nucleotide exchange factor (GEF) 35 protein-coding 13-PTNLD9-TUMOR_peak_18074 chr15 99982512 99982742 + 4.42378 NA Intergenic Intergenic -123506 NM_005587 4205 Hs.268675 NM_005587 HPRD:02807 MEF2A ADCAD1|RSRFC4|RSRFC9|mef2 myocyte enhancer factor 2A protein-coding 13-PTNLD9-TUMOR_peak_32075 chr21 30391425 30391712 + 4.42378 NA exon (NM_016940, exon 1 of 5) exon (NM_016940, exon 1 of 5) 117 NM_016940 10069 Hs.713123 NM_016940 RWDD2B C21orf6 RWD domain containing 2B protein-coding 13-PTNLD9-TUMOR_peak_429 chr1 11845268 11845395 + 4.42378 NA TTS (NM_005957) TTS (NM_005957) -20822 NM_001256959 1185 Hs.193043 NM_001286 HPRD:04102 CLCN6 CLC-6 chloride channel, voltage-sensitive 6 protein-coding 13-PTNLD9-TUMOR_peak_43780 chr6 11424754 11424860 + 4.42378 NA Intergenic Intergenic -42226 NR_073131 4739 Hs.37982 NM_006403 HPRD:11888 NEDD9 CAS-L|CAS2|CASL|CASS2|HEF1 neural precursor cell expressed, developmentally down-regulated 9 protein-coding 13-PTNLD9-TUMOR_peak_38807 chr4 87040555 87040782 + 4.42378 NA promoter-TSS (NR_110879) promoter-TSS (NR_110879) -291 NR_110879 101929064 Hs.662221 NR_110879 ENSG00000250062 LOC101929064 - uncharacterized LOC101929064 ncRNA 13-PTNLD9-TUMOR_peak_27089 chr2 65092735 65092898 + 4.42378 NA Intergenic Intergenic -2051 NR_110224 101927438 Hs.580313 NR_110224 LOC101927438 - uncharacterized LOC101927438 ncRNA 13-PTNLD9-TUMOR_peak_25076 chr19 43968102 43968211 + 4.42378 NA intron (NM_014400, intron 2 of 4) CpG-13856 1675 NM_014400 27076 Hs.631594 NM_014400 HPRD:10783 LYPD3 C4.4A LY6/PLAUR domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_29319 chr2 188988386 188988486 + 4.42371 NA Intergenic L1PA3|LINE|L1 -167960 NM_001252669 51454 Hs.470887 NM_016315 GULP1 CED-6|CED6|GULP GULP, engulfment adaptor PTB domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_42678 chr5 150637565 150637717 + 4.42371 NA intron (NM_001167607, intron 1 of 3) intron (NM_001167607, intron 1 of 3) 5028 NM_000405 2760 Hs.483873 NM_000405 HPRD:02034 GM2A GM2-AP|SAP-3 GM2 ganglioside activator protein-coding 13-PTNLD9-TUMOR_peak_54223 chr9 102261402 102261715 + 4.42085 NA Intergenic L1PA2|LINE|L1 -124019 NR_102270 100996569 Hs.745280 NR_102270 ENSG00000271086 NAMA - non-protein coding RNA, associated with MAP kinase pathway and growth arrest ncRNA 13-PTNLD9-TUMOR_peak_31424 chr20 48883866 48884048 + 4.42085 NA promoter-TSS (NM_001278655) promoter-TSS (NM_001278655) -66 NM_001278655 100506115 Hs.235484 NM_001278655 LINC01272 - long intergenic non-protein coding RNA 1272 protein-coding 13-PTNLD9-TUMOR_peak_47362 chr7 44530192 44530480 + 4.42085 NA promoter-TSS (NM_015332) promoter-TSS (NM_015332) 49 NM_015332 23386 Hs.488171 NM_015332 NUDCD3 NudCL NudC domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_54821 chr9 130566252 130566348 + 4.42085 NA intron (NM_001018078, intron 1 of 14) intron (NM_001018078, intron 1 of 14) 840 NM_001018078 2356 Hs.335084 NM_004957 HPRD:00642 FPGS - folylpolyglutamate synthase protein-coding 13-PTNLD9-TUMOR_peak_16894 chr15 30114948 30115225 + 4.42085 NA promoter-TSS (NM_003257) promoter-TSS (NM_003257) -380 NM_003257 7082 Hs.743990 NM_003257 HPRD:03002 TJP1 ZO-1 tight junction protein 1 protein-coding 13-PTNLD9-TUMOR_peak_15102 chr13 110662901 110662998 + 4.42085 NA Intergenic Intergenic -224035 NM_003749 8660 Hs.442344 NM_003749 HPRD:02878 IRS2 IRS-2 insulin receptor substrate 2 protein-coding 13-PTNLD9-TUMOR_peak_7411 chr10 54782455 54782566 + 4.42085 NA Intergenic MER50|LTR|ERV1 -251050 NM_000242 4153 Hs.499674 NM_000242 HPRD:01107 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose-binding lectin (protein C) 2, soluble protein-coding 13-PTNLD9-TUMOR_peak_16958 chr15 32584570 32584728 + 4.42085 NA Intergenic L1PA3|LINE|L1 110844 NM_001282493 653125 NM_001282493 GOLGA8K - golgin A8 family, member K protein-coding 13-PTNLD9-TUMOR_peak_12173 chr12 12902416 12902596 + 4.41028 NA intron (NM_001130415, intron 1 of 1) MER51A|LTR|ERV1 -15077 NR_030344 693198 NR_030344 MIR613 MIRN613|hsa-mir-613 microRNA 613 ncRNA 13-PTNLD9-TUMOR_peak_50086 chr8 11499984 11500209 + 4.41028 NA Intergenic Intergenic -61621 NM_002052 2626 Hs.243987 NM_002052 HPRD:08994 GATA4 ASD2|TACHD|VSD1 GATA binding protein 4 protein-coding 13-PTNLD9-TUMOR_peak_12574 chr12 40720104 40720237 + 4.41028 NA intron (NM_198578, intron 38 of 50) AluY|SINE|Alu -67026 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 13-PTNLD9-TUMOR_peak_54269 chr9 104947706 104948055 + 4.41028 NA Intergenic Intergenic -334039 NR_103830 414319 Hs.385790 NR_103830 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 13-PTNLD9-TUMOR_peak_5651 chr1 226812423 226812550 + 4.41028 NA Intergenic Intergenic 50283 NR_103784 100506443 Hs.664293 NR_103784 ITPKB-IT1 - ITPKB intronic transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_20107 chr16 89119328 89119422 + 4.41028 NA Intergenic CpG -40842 NM_001243279 197322 Hs.461727 NM_174917 HPRD:14117 ACSF3 - acyl-CoA synthetase family member 3 protein-coding 13-PTNLD9-TUMOR_peak_34935 chr3 71472546 71472806 + 4.41028 NA intron (NM_001012505, intron 3 of 6) intron (NM_001012505, intron 3 of 6) 118564 NR_031697 100302112 NR_031697 miRBase:MI0006431 MIR1284 MIRN1284|hsa-mir-1284 microRNA 1284 ncRNA 13-PTNLD9-TUMOR_peak_20200 chr17 655491 655725 + 4.41028 NA promoter-TSS (NR_024120) promoter-TSS (NR_024120) 35 NR_024120 100131454 Hs.662289 NR_024120 ENSG00000231784 DBIL5P ELP2P diazepam binding inhibitor-like 5, pseudogene pseudo 13-PTNLD9-TUMOR_peak_39065 chr4 110510888 110510982 + 4.41028 NA intron (NM_017918, intron 1 of 7) L2a|LINE|L2 29580 NM_017918 55013 Hs.234149 NM_017918 CCDC109B EMRE|MCUb coiled-coil domain containing 109B protein-coding 13-PTNLD9-TUMOR_peak_17602 chr15 72476964 72477079 + 4.41028 NA intron (NM_001012642, intron 1 of 11) intron (NM_001012642, intron 1 of 11) 13115 NM_001012642 196996 Hs.596332 NM_001012642 HPRD:13161 GRAMD2 - GRAM domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_18526 chr16 11680704 11680936 + 4.41028 NA promoter-TSS (NM_004862) promoter-TSS (NM_004862) -14 NM_001136472 9516 Hs.459940 NM_004862 HPRD:10354 LITAF PIG7|SIMPLE|TP53I7 lipopolysaccharide-induced TNF factor protein-coding 13-PTNLD9-TUMOR_peak_8551 chr10 126480393 126480502 + 4.41028 NA promoter-TSS (NM_212554) promoter-TSS (NM_212554) -8 NM_212554 399818 Hs.741365 NM_212554 METTL10 C10orf138|Em:AC068896.3 methyltransferase like 10 protein-coding 13-PTNLD9-TUMOR_peak_51351 chr8 97657433 97657621 + 4.41028 NA promoter-TSS (NM_016134) promoter-TSS (NM_016134) 72 NM_016134 10404 Hs.156178 NM_016134 HPRD:07140 CPQ LDP|PGCP carboxypeptidase Q protein-coding 13-PTNLD9-TUMOR_peak_48407 chr7 97687622 97687783 + 4.41028 NA Intergenic Intergenic -48495 NM_014916 22853 Hs.444179 NM_014916 HPRD:13994 LMTK2 AATYK2|BREK|KPI-2|KPI2|LMR2|PPP1R100|cprk lemur tyrosine kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_46535 chr6 167655599 167655833 + 4.41028 NA Intergenic Intergenic -49087 NM_001143947 54346 Hs.567508 NM_018974 HPRD:12148 UNC93A Unc-93A|dJ366N23.1|dJ366N23.2 unc-93 homolog A (C. elegans) protein-coding 13-PTNLD9-TUMOR_peak_18470 chr16 10097616 10097725 + 4.41028 NA intron (NM_000833, intron 3 of 13) intron (NM_000833, intron 3 of 13) 178254 NM_001134408 2903 Hs.411472 NM_000833 HPRD:00698 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate receptor, ionotropic, N-methyl D-aspartate 2A protein-coding 13-PTNLD9-TUMOR_peak_9600 chr11 41806614 41806759 + 4.41028 NA intron (NR_120584, intron 2 of 5) MER21C|LTR|ERVL 70568 NR_120584 102723644 Hs.564283 NR_120584 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 13-PTNLD9-TUMOR_peak_31226 chr20 44760711 44760889 + 4.41028 NA Intergenic LTR16C|LTR|ERVL 13894 NM_152854 958 Hs.472860 NM_001250 HPRD:00178 CD40 Bp50|CDW40|TNFRSF5|p50 CD40 molecule, TNF receptor superfamily member 5 protein-coding 13-PTNLD9-TUMOR_peak_42258 chr5 138561932 138562150 + 4.41028 NA Intergenic MER50|LTR|ERV1 -27976 NM_001037633 64374 Hs.483521 NM_022464 HPRD:12150 SIL1 BAP|MSS|ULG5 SIL1 nucleotide exchange factor protein-coding 13-PTNLD9-TUMOR_peak_30517 chr20 17908967 17909227 + 4.41028 NA Intergenic Intergenic 34492 NR_003045 692086 Hs.680747 NR_003045 SNORD17 HBI-43 small nucleolar RNA, C/D box 17 snoRNA 13-PTNLD9-TUMOR_peak_43305 chr5 179223545 179223660 + 4.40524 NA TTS (NM_054013) TTS (NM_054013) 1744 NR_031598 100302156 NR_031598 MIR1229 MIRN1229|hsa-mir-1229 microRNA 1229 ncRNA 13-PTNLD9-TUMOR_peak_12824 chr12 52642999 52643107 + 4.40487 NA TTS (NM_005556) TTS (NM_005556) 16099 NM_005556 3855 Hs.411501 NM_005556 HPRD:01014 KRT7 CK7|K2C7|K7|SCL keratin 7 protein-coding 13-PTNLD9-TUMOR_peak_53 chr1 999368 999462 + 4.40127 NA Intergenic Intergenic 10272 NM_001205252 401934 Hs.568137 NM_001205252 RNF223 - ring finger protein 223 protein-coding 13-PTNLD9-TUMOR_peak_11953 chr12 6327925 6328042 + 4.40127 NA intron (NM_001769, intron 1 of 7) intron (NM_001769, intron 1 of 7) 18501 NM_001769 928 Hs.114286 NM_001769 HPRD:00880 CD9 BTCC-1|DRAP-27|MIC3|MRP-1|TSPAN-29|TSPAN29 CD9 molecule protein-coding 13-PTNLD9-TUMOR_peak_22035 chr17 73874793 73875015 + 4.40127 NA promoter-TSS (NM_033452) promoter-TSS (NM_033452) -248 NM_033452 91107 Hs.293660 NM_033452 HPRD:15564 TRIM47 GOA|RNF100 tripartite motif containing 47 protein-coding 13-PTNLD9-TUMOR_peak_55988 chrX 61718707 61718809 + 4.40104 NA Intergenic ALR/Alpha|Satellite|centr 852460 NM_001012968 139886 Hs.612782 NM_001012968 HPRD:12556 SPIN4 - spindlin family, member 4 protein-coding 13-PTNLD9-TUMOR_peak_7960 chr10 89621438 89621563 + 4.40097 NA 3' UTR (NM_001126049, exon 1 of 1) 3' UTR (NM_001126049, exon 1 of 1) 1694 NM_001126049 100144748 Hs.559820 NM_001126049 ENSG00000227268 KLLN CWS4|KILLIN killin, p53-regulated DNA replication inhibitor protein-coding 13-PTNLD9-TUMOR_peak_13340 chr12 72234379 72234527 + 4.40097 NA intron (NR_027449, intron 1 of 15) intron (NR_027449, intron 1 of 15) 966 NR_027449 64786 Hs.284630 NM_022771 HPRD:15470 TBC1D15 RAB7-GAP TBC1 domain family, member 15 protein-coding 13-PTNLD9-TUMOR_peak_36650 chr3 168490167 168490432 + 4.40097 NA intron (NR_021485, intron 6 of 15) L1PA3|LINE|L1 -129434 NR_109989 100507661 Hs.65918 NR_109989 ENSG00000242268 LOC100507661 - uncharacterized LOC100507661 ncRNA 13-PTNLD9-TUMOR_peak_37031 chr3 185539011 185539105 + 4.40097 NA promoter-TSS (NM_001291873) promoter-TSS (NM_001291873) -139 NM_001291872 10644 Hs.35354 NM_006548 HPRD:10507 IGF2BP2 IMP-2|IMP2|VICKZ2 insulin-like growth factor 2 mRNA binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_42322 chr5 139726320 139726421 + 4.40097 NA promoter-TSS (NM_001945) promoter-TSS (NM_001945) -182 NM_001945 1839 Hs.799 NM_001945 HPRD:00526 HBEGF DTR|DTS|DTSF|HEGFL heparin-binding EGF-like growth factor protein-coding 13-PTNLD9-TUMOR_peak_5889 chr1 234446024 234446118 + 4.39750 NA intron (NM_001300845, intron 3 of 6) intron (NM_001300845, intron 3 of 6) 3858 NR_039818 100616380 NR_039818 MIR4671 - microRNA 4671 ncRNA 13-PTNLD9-TUMOR_peak_46270 chr6 150039159 150039303 + 4.39750 NA 5' UTR (NM_004690, exon 1 of 8) 5' UTR (NM_004690, exon 1 of 8) 161 NM_004690 9113 Hs.549084 NM_004690 HPRD:09147 LATS1 WARTS|wts large tumor suppressor kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_4397 chr1 171827984 171828260 + 4.39750 NA intron (NM_001136127, intron 1 of 19) L2c|LINE|L2 17504 NM_001136127 26052 Hs.654775 NM_015569 HPRD:13241 DNM3 Dyna III dynamin 3 protein-coding 13-PTNLD9-TUMOR_peak_8906 chr11 5950912 5951261 + 4.39750 NA Intergenic HERV-Fc2-int|LTR|ERV1 -17491 NM_001003443 390083 Hs.553741 NM_001003443 HPRD:17747 OR56A3 OR56A2P|OR56A3P|OR56A6 olfactory receptor, family 56, subfamily A, member 3 protein-coding 13-PTNLD9-TUMOR_peak_40578 chr5 34306357 34306451 + 4.39750 NA Intergenic SVA_F|Other|Other -181771 NR_037951 100534612 Hs.171929 NR_037951 C1QTNF3-AMACR - C1QTNF3-AMACR readthrough (NMD candidate) ncRNA 13-PTNLD9-TUMOR_peak_9004 chr11 9406081 9406266 + 4.39750 NA promoter-TSS (NM_006391) promoter-TSS (NM_006391) 4 NM_006391 10527 Hs.744911 NM_006391 HPRD:09280 IPO7 Imp7|RANBP7 importin 7 protein-coding 13-PTNLD9-TUMOR_peak_10888 chr11 90897182 90897337 + 4.39750 NA Intergenic Intergenic -608234 NR_039711 100616186 NR_039711 miRBase:MI0016852 MIR4490 - microRNA 4490 ncRNA 13-PTNLD9-TUMOR_peak_11392 chr11 118977896 118978095 + 4.39740 NA promoter-TSS (NM_001290474) promoter-TSS (NM_001290474) -65 NM_014807 9854 Hs.26899 NM_014807 C2CD2L TMEM24 C2CD2-like protein-coding 13-PTNLD9-TUMOR_peak_33333 chr22 41681530 41681764 + 4.39740 NA 5' UTR (NM_001278651, exon 1 of 17) 5' UTR (NM_001278651, exon 1 of 17) 374 NM_001278651 5905 Hs.183800 NM_002883 HPRD:03839 RANGAP1 Fug1|RANGAP|SD Ran GTPase activating protein 1 protein-coding 13-PTNLD9-TUMOR_peak_23945 chr19 10655121 10655215 + 4.39740 NA intron (NR_104025, intron 1 of 8) intron (NR_104025, intron 1 of 8) 598 NM_032885 84971 Hs.512799 NM_032885 HPRD:07005 ATG4D APG4-D|APG4D|AUTL4 autophagy related 4D, cysteine peptidase protein-coding 13-PTNLD9-TUMOR_peak_10241 chr11 65420071 65420176 + 4.39740 NA TTS (NM_001243984) TTS (NM_001243984) 3460 NR_039709 100616284 NR_039709 MIR4489 - microRNA 4489 ncRNA 13-PTNLD9-TUMOR_peak_2089 chr1 65643299 65643408 + 4.39740 NA intron (NM_001005353, intron 2 of 5) intron (NM_001005353, intron 2 of 5) 29503 NM_013410 205 Hs.10862 NM_013410 HPRD:00048 AK4 AK 4|AK3|AK3L1|AK3L2 adenylate kinase 4 protein-coding 13-PTNLD9-TUMOR_peak_1698 chr1 48360505 48360599 + 4.39740 NA intron (NM_001194986, intron 2 of 6) L2c|LINE|L2 102010 NM_001194986 388630 Hs.61504 NM_001194986 ENSG00000269113 TRABD2B TIKI2 TraB domain containing 2B protein-coding 13-PTNLD9-TUMOR_peak_51988 chr8 128751951 128752082 + 4.39216 NA intron (NM_002467, intron 2 of 2) intron (NM_002467, intron 2 of 2) 3701 NM_002467 4609 Hs.202453 NM_002467 HPRD:01818 MYC MRTL|MYCC|bHLHe39|c-Myc v-myc avian myelocytomatosis viral oncogene homolog protein-coding 13-PTNLD9-TUMOR_peak_31305 chr20 46524603 46524799 + 4.38531 NA Intergenic D20S16|Satellite|Satellite -87269 NR_109942 101060004 Hs.129970 NR_109942 LINC01523 - long intergenic non-protein coding RNA 1523 ncRNA 13-PTNLD9-TUMOR_peak_47914 chr7 73476355 73476493 + 4.38531 NA intron (NM_001278939, intron 27 of 33) intron (NM_001278939, intron 27 of 33) -21683 NM_002314 3984 Hs.647035 NM_002314 HPRD:03210 LIMK1 LIMK|LIMK-1 LIM domain kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_20932 chr17 36411656 36411781 + 4.38531 NA intron (NR_036750, intron 1 of 11) intron (NR_036750, intron 1 of 11) 1538 NR_036750 440434 Hs.443837 NR_036750 ENSG00000174093 LOC440434 - aminopeptidase puromycin sensitive pseudogene pseudo 13-PTNLD9-TUMOR_peak_22287 chr17 79703218 79703312 + 4.38531 NA Intergenic Intergenic 23999 NM_001270953 1468 Hs.548187 NM_012140 HPRD:08424 SLC25A10 DIC solute carrier family 25 (mitochondrial carrier; dicarboxylate transporter), member 10 protein-coding 13-PTNLD9-TUMOR_peak_2341 chr1 86046596 86046709 + 4.38508 NA 5' UTR (NM_001554, exon 1 of 5) 5' UTR (NM_001554, exon 1 of 5) 208 NM_001554 3491 Hs.8867 NM_001554 HPRD:09089 CYR61 CCN1|GIG1|IGFBP10 cysteine-rich, angiogenic inducer, 61 protein-coding 13-PTNLD9-TUMOR_peak_8543 chr10 126218851 126219080 + 4.37952 NA intron (NM_022126, intron 6 of 6) intron (NM_022126, intron 6 of 6) 68624 NM_001167880 64077 Hs.527748 NM_022126 HPRD:17274 LHPP HDHD2B phospholysine phosphohistidine inorganic pyrophosphate phosphatase protein-coding 13-PTNLD9-TUMOR_peak_19530 chr16 66520996 66521090 + 4.37952 NA intron (NM_001197225, intron 4 of 4) intron (NM_001197225, intron 4 of 4) -10738 NR_109960 101927726 Hs.739193 NR_109960 BEAN1-AS1 CTD-2258A20.5 BEAN1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_51687 chr8 118621380 118621518 + 4.37952 NA Intergenic Intergenic 88497 NM_080651 90390 Hs.492612 NM_080651 HPRD:11631 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 13-PTNLD9-TUMOR_peak_33200 chr22 36793597 36793748 + 4.37952 NA Intergenic Intergenic -9609 NM_002473 4627 Hs.474751 NM_002473 HPRD:01177 MYH9 BDPLT6|DFNA17|EPSTS|FTNS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA myosin, heavy chain 9, non-muscle protein-coding 13-PTNLD9-TUMOR_peak_26627 chr2 38603888 38604002 + 4.37952 NA intron (NM_001135673, intron 1 of 12) CpG 487 NM_022374 64225 Hs.727652 NM_022374 HPRD:10662 ATL2 ARL3IP2|ARL6IP2|atlastin2 atlastin GTPase 2 protein-coding 13-PTNLD9-TUMOR_peak_42312 chr5 139631330 139631424 + 4.37952 NA intron (NM_002622, intron 3 of 3) intron (NM_002622, intron 3 of 3) 51312 NM_002622 5201 Hs.483564 NM_002622 HPRD:05357 PFDN1 PDF|PFD1 prefoldin subunit 1 protein-coding 13-PTNLD9-TUMOR_peak_25886 chr1_gl000192_random 284190 284286 + 4.37952 NA intron (NR_103556, intron 13 of 45) LTR1D|LTR|ERV1 123272 NR_103556 100288805 Hs.648712 NR_049745 HYDIN2 HYDINP1 HYDIN2, axonemal central pair apparatus protein (pseudogene) pseudo 13-PTNLD9-TUMOR_peak_30799 chr20 32105941 32106048 + 4.37952 NA intron (NM_001032999, intron 1 of 10) AluSc8|SINE|Alu 28066 NM_001032999 9139 Hs.153934 NM_005093 HPRD:04721 CBFA2T2 EHT|MTGR1|ZMYND3|p85 core-binding factor, runt domain, alpha subunit 2; translocated to, 2 protein-coding 13-PTNLD9-TUMOR_peak_29154 chr2 175636703 175636843 + 4.37952 NA Intergenic Intergenic -7573 NM_000079 1134 Hs.434479 NM_000079 HPRD:00007 CHRNA1 ACHRA|ACHRD|CHRNA|CMS2A|FCCMS|SCCMS cholinergic receptor, nicotinic, alpha 1 (muscle) protein-coding 13-PTNLD9-TUMOR_peak_13891 chr12 112962611 112962802 + 4.37952 NA Intergenic L2c|LINE|L2 106170 NM_002834 5781 Hs.506852 NM_002834 HPRD:01470 PTPN11 BPTP3|CFC|NS1|PTP-1D|PTP2C|SH-PTP2|SH-PTP3|SHP2 protein tyrosine phosphatase, non-receptor type 11 protein-coding 13-PTNLD9-TUMOR_peak_37632 chr4 2765897 2766125 + 4.37952 NA Intergenic CpG -7908 NM_024309 79155 Hs.368551 NM_024309 HPRD:18207 TNIP2 ABIN2|FLIP1|KLIP TNFAIP3 interacting protein 2 protein-coding 13-PTNLD9-TUMOR_peak_28904 chr2 161826582 161826754 + 4.37952 NA Intergenic Intergenic -166798 NM_133484 10010 Hs.132257 NM_004180 HPRD:04870 TANK I-TRAF|ITRAF|TRAF2 TRAF family member-associated NFKB activator protein-coding 13-PTNLD9-TUMOR_peak_14932 chr13 90110332 90110497 + 4.37952 NA Intergenic ERVL-E-int|LTR|ERVL 106253 NR_046991 100874139 Hs.742173 NR_046991 LINC00353 - long intergenic non-protein coding RNA 353 ncRNA 13-PTNLD9-TUMOR_peak_47126 chr7 28189395 28189548 + 4.37952 NA intron (NM_175061, intron 1 of 4) intron (NM_175061, intron 1 of 4) -30605 NR_034097 100128081 Hs.434307 NR_034097 JAZF1-AS1 - JAZF1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_23456 chr18 72191539 72191758 + 4.37952 NA TTS (NM_001168499) TTS (NM_001168499) -10044 NM_032649 84735 Hs.400613 NM_032649 HPRD:09883 CNDP1 CN1|CPGL2|HsT2308 carnosine dipeptidase 1 (metallopeptidase M20 family) protein-coding 13-PTNLD9-TUMOR_peak_8011 chr10 93169860 93170168 + 4.37952 NA promoter-TSS (NM_173497) promoter-TSS (NM_173497) -28 NM_001284274 143279 Hs.596096 NM_173497 HPRD:13643 HECTD2 - HECT domain containing E3 ubiquitin protein ligase 2 protein-coding 13-PTNLD9-TUMOR_peak_36114 chr3 138669079 138669177 + 4.37952 NA exon (NM_001040061, exon 3 of 3) exon (NM_001040061, exon 3 of 3) 3052 NM_001040061 401089 Hs.591303 NM_001040061 ENSG00000206262 FOXL2NB C3orf72 FOXL2 neighbor protein-coding 13-PTNLD9-TUMOR_peak_52861 chr9 19913225 19913416 + 4.37952 NA Intergenic Intergenic -126303 NM_020344 25769 Hs.283014 NM_020344 HPRD:15351 SLC24A2 NCKX2 solute carrier family 24 (sodium/potassium/calcium exchanger), member 2 protein-coding 13-PTNLD9-TUMOR_peak_9738 chr11 47736780 47737005 + 4.37952 NA promoter-TSS (NM_024783) promoter-TSS (NM_024783) 36 NM_024783 79841 Hs.147377 NM_024783 HPRD:08039 AGBL2 CCP2 ATP/GTP binding protein-like 2 protein-coding 13-PTNLD9-TUMOR_peak_33580 chr3 4777944 4778118 + 4.37952 NA intron (NM_001168272, intron 43 of 60) MER91A|DNA|hAT-Tip100 15243 NR_004428 100126791 Hs.663059 NR_004428 ENSG00000235947 EGOT EGO|NCRNA00190 eosinophil granule ontogeny transcript (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_29830 chr2 219232568 219232798 + 4.37952 NA promoter-TSS (NR_110573) promoter-TSS (NR_110573) -58 NR_110573 101928513 Hs.512386 NR_110573 CATIP-AS1 - CATIP antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_52693 chr9 5886247 5886341 + 4.37952 NA Intergenic Intergenic -4615 NM_005511 2315 Hs.154069 NM_005511 MLANA MART-1|MART1 melan-A protein-coding 13-PTNLD9-TUMOR_peak_33772 chr3 11426954 11427069 + 4.37952 NA intron (NM_001144912, intron 16 of 16) L2c|LINE|L2 113001 NM_001144912 10533 Hs.38032 NM_006395 HPRD:12293 ATG7 APG7-LIKE|APG7L|GSA7 autophagy related 7 protein-coding 13-PTNLD9-TUMOR_peak_4230 chr1 164695618 164695712 + 4.37952 NA intron (NM_001204961, intron 2 of 7) intron (NM_001204961, intron 2 of 7) 48213 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 13-PTNLD9-TUMOR_peak_29339 chr2 190445445 190445725 + 4.37367 NA promoter-TSS (NM_014585) promoter-TSS (NM_014585) -48 NM_014585 30061 Hs.643005 NM_014585 HPRD:05229 SLC40A1 FPN1|HFE4|IREG1|MST079|MTP1|SLC11A3 solute carrier family 40 (iron-regulated transporter), member 1 protein-coding 13-PTNLD9-TUMOR_peak_7151 chr10 43761294 43761616 + 4.37367 NA intron (NM_145313, intron 1 of 12) intron (NM_145313, intron 1 of 12) 912 NM_145313 221002 Hs.125293 NM_145313 HPRD:15211 RASGEF1A CG4853 RasGEF domain family, member 1A protein-coding 13-PTNLD9-TUMOR_peak_49258 chr7 136213164 136213263 + 4.37367 NA Intergenic Intergenic -340186 NM_001006627 1129 Hs.535891 NM_000739 HPRD:00328 CHRM2 HM2 cholinergic receptor, muscarinic 2 protein-coding 13-PTNLD9-TUMOR_peak_1799 chr1 53513952 53514266 + 4.37367 NA intron (NM_001007250, intron 3 of 3) L2c|LINE|L2 -13615 NM_001199082 127435 Hs.586141 NM_153703 HPRD:10557 PODN PCAN|SLRR5A podocan protein-coding 13-PTNLD9-TUMOR_peak_47297 chr7 41970228 41970483 + 4.37113 NA Intergenic Intergenic -227649 NM_002192 3624 Hs.583348 NM_002192 INHBA EDF|FRP inhibin, beta A protein-coding 13-PTNLD9-TUMOR_peak_19559 chr16 67051880 67052045 + 4.37113 NA Intergenic Intergenic -11088 NM_001755 865 Hs.460988 NM_001755 HPRD:00418 CBFB PEBP2B core-binding factor, beta subunit protein-coding 13-PTNLD9-TUMOR_peak_5139 chr1 204347208 204347484 + 4.37113 NA Intergenic CpG -8499 NR_027022 127841 Hs.213144 NR_027022 LINC00628 - long intergenic non-protein coding RNA 628 ncRNA 13-PTNLD9-TUMOR_peak_26776 chr2 45502717 45502897 + 4.37113 NA Intergenic Intergenic -20727 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 13-PTNLD9-TUMOR_peak_17961 chr15 90650059 90650176 + 4.37113 NA Intergenic L2|LINE|L2 -4331 NM_002168 3418 Hs.596461 NM_002168 HPRD:00973 IDH2 D2HGA2|ICD-M|IDH|IDHM|IDP|IDPM|mNADP-IDH isocitrate dehydrogenase 2 (NADP+), mitochondrial protein-coding 13-PTNLD9-TUMOR_peak_31646 chr20 55383306 55383645 + 4.37113 NA Intergenic Intergenic 179117 NM_003222 7022 Hs.473152 NM_003222 HPRD:03361 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma) protein-coding 13-PTNLD9-TUMOR_peak_55873 chrX 52732057 52732230 + 4.37113 NA intron (NM_175698, intron 4 of 7).2 intron (NM_175698, intron 4 of 7).2 4133 NM_001164417 727837 Hs.289105 NM_001164417 ENSG00000157950 SSX2B CT5.2|CT5.2b|HOM-MEL-40|SSX synovial sarcoma, X breakpoint 2B protein-coding 13-PTNLD9-TUMOR_peak_1523 chr1 44525093 44525187 + 4.37113 NA Intergenic MER66-int|LTR|ERV1 -27976 NM_001024845 6536 Hs.442590 NM_006934 HPRD:03010 SLC6A9 GLYT1 solute carrier family 6 (neurotransmitter transporter, glycine), member 9 protein-coding 13-PTNLD9-TUMOR_peak_37824 chr4 7219867 7219985 + 4.37113 NA intron (NM_020777, intron 1 of 26) intron (NM_020777, intron 1 of 26) 25552 NM_020777 57537 Hs.479099 NM_020777 HPRD:12099 SORCS2 - sortilin-related VPS10 domain containing receptor 2 protein-coding 13-PTNLD9-TUMOR_peak_32468 chr21 44579601 44579734 + 4.37113 NA Intergenic Intergenic -9451 NM_000394 1409 Hs.184085 NM_000394 HPRD:00427 CRYAA CRYA1|CTRCT9|HSPB4 crystallin, alpha A protein-coding 13-PTNLD9-TUMOR_peak_41965 chr5 127419322 127419499 + 4.37069 NA promoter-TSS (NM_001046) promoter-TSS (NM_001046) -73 NM_001046 6558 Hs.162585 NM_001046 HPRD:06775 SLC12A2 BSC|BSC2|NKCC1|PPP1R141 solute carrier family 12 (sodium/potassium/chloride transporter), member 2 protein-coding 13-PTNLD9-TUMOR_peak_49825 chr7 156744102 156744196 + 4.37069 NA intron (NM_138400, intron 1 of 10) intron (NM_138400, intron 1 of 10) 1732 NM_138400 64434 Hs.15825 NM_138400 HPRD:18485 NOM1 C7orf3|PPP1R113|SGD1 nucleolar protein with MIF4G domain 1 protein-coding 13-PTNLD9-TUMOR_peak_1199 chr1 38274112 38274314 + 4.36670 NA promoter-TSS (NM_024640) promoter-TSS (NM_024640) -348 NM_024640 79693 Hs.301564 NM_024640 HPRD:18313 YRDC DRIP3|IRIP|SUA5 yrdC N(6)-threonylcarbamoyltransferase domain containing protein-coding 13-PTNLD9-TUMOR_peak_56719 chrX 153718492 153718719 + 4.36670 NA intron (NM_001142391, intron 2 of 3) intron (NM_001142391, intron 2 of 3) 424 NM_019848 8273 Hs.522826 NM_019848 HPRD:02418 SLC10A3 DXS253E|P3 solute carrier family 10, member 3 protein-coding 13-PTNLD9-TUMOR_peak_53294 chr9 42368512 42368679 + 4.36670 NA exon (NM_001012419, exon 1 of 15).3 exon (NM_001012419, exon 1 of 15).3 258 NM_001012419 441425 Hs.632663 NM_001012419 HPRD:17405 ANKRD20A3 - ankyrin repeat domain 20 family, member A3 protein-coding 13-PTNLD9-TUMOR_peak_44778 chr6 35464074 35464168 + 4.35888 NA intron (NM_003214, intron 1 of 12) CpG 740 NM_003214 7005 Hs.485205 NM_003214 HPRD:04411 TEAD3 DTEF-1|ETFR-1|TEAD-3|TEAD5|TEF-5|TEF5 TEA domain family member 3 protein-coding 13-PTNLD9-TUMOR_peak_55957 chrX 58579617 58579716 + 4.35698 NA Intergenic ALR/Alpha|Satellite|centr -642599 NM_007156 7789 Hs.550094 NM_007156 HPRD:02210 ZXDA ZNF896 zinc finger, X-linked, duplicated A protein-coding 13-PTNLD9-TUMOR_peak_53762 chr9 84177748 84177890 + 4.34991 NA Intergenic Intergenic 125777 NM_005077 7088 Hs.197320 NM_005077 HPRD:02557 TLE1 ESG|ESG1|GRG1 transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_26485 chr2 30441858 30442052 + 4.34991 NA Intergenic MER129|LTR?|LTR? -12442 NM_030915 81606 Hs.567598 NM_030915 HPRD:13965 LBH - limb bud and heart development protein-coding 13-PTNLD9-TUMOR_peak_1413 chr1 42922515 42922638 + 4.34991 NA promoter-TSS (NM_001146192) promoter-TSS (NM_001146192) 411 NM_001077447 79717 Hs.706662 NM_024664 HPRD:07760 PPCS - phosphopantothenoylcysteine synthetase protein-coding 13-PTNLD9-TUMOR_peak_35381 chr3 112359933 112360071 + 4.34991 NA promoter-TSS (NM_199512) promoter-TSS (NM_199512) -12 NM_199511 151887 Hs.477128 NM_199511 HPRD:10508 CCDC80 DRO1|SSG1|URB|okuribin coiled-coil domain containing 80 protein-coding 13-PTNLD9-TUMOR_peak_47047 chr7 22766577 22766710 + 4.34991 NA promoter-TSS (NM_000600) promoter-TSS (NM_000600) -123 NM_000600 3569 Hs.654458 NM_000600 HPRD:00970 IL6 BSF2|HGF|HSF|IFNB2|IL-6 interleukin 6 protein-coding 13-PTNLD9-TUMOR_peak_17278 chr15 51177537 51177631 + 4.34931 NA Intergenic Intergenic -23285 NM_007347 23431 Hs.413366 NM_007347 HPRD:06258 AP4E1 CPSQ4|SPG51 adaptor-related protein complex 4, epsilon 1 subunit protein-coding 13-PTNLD9-TUMOR_peak_46072 chr6 133033669 133033823 + 4.34931 NA intron (NM_004666, intron 1 of 6) intron (NM_004666, intron 1 of 6) 1448 NM_004666 8876 Hs.12114 NM_004666 HPRD:04651 VNN1 HDLCQ8|Tiff66 vanin 1 protein-coding 13-PTNLD9-TUMOR_peak_48135 chr7 79554393 79554487 + 4.34931 NA Intergenic Intergenic 153868 NR_031667 100313772 NR_031667 miRBase:MI0006400 MIR548M MIRN548M microRNA 548m ncRNA 13-PTNLD9-TUMOR_peak_52829 chr9 18185360 18185454 + 4.34931 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -288672 NM_052866 92949 Hs.741483 NM_052866 HPRD:16462 ADAMTSL1 ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN ADAMTS-like 1 protein-coding 13-PTNLD9-TUMOR_peak_45569 chr6 80170962 80171108 + 4.34931 NA Intergenic MER77B|LTR|ERVL 76112 NM_181714 167691 Hs.21945 NM_181714 HPRD:10791 LCA5 C6orf152 Leber congenital amaurosis 5 protein-coding 13-PTNLD9-TUMOR_peak_48813 chr7 108201680 108201793 + 4.34931 NA TTS (NM_001130475) TTS (NM_001130475) 8161 NM_182529 168451 Hs.707689 NM_182529 HPRD:15498 THAP5 - THAP domain containing 5 protein-coding 13-PTNLD9-TUMOR_peak_33139 chr22 32072756 32072932 + 4.34931 NA Intergenic Intergenic -46034 NM_014338 23761 Hs.420559 NM_014338 HPRD:17854 PISD DJ858B16|PSD|PSDC|PSSC|dJ858B16.2 phosphatidylserine decarboxylase protein-coding 13-PTNLD9-TUMOR_peak_12081 chr12 8479305 8479542 + 4.34931 NA Intergenic Intergenic 63925 NR_024420 389634 Hs.434403 NM_001012988 HPRD:18395 LINC00937 - long intergenic non-protein coding RNA 937 ncRNA 13-PTNLD9-TUMOR_peak_1658 chr1 47414338 47414522 + 4.34931 NA Intergenic Intergenic -7274 NM_000778 1579 Hs.1645 NM_000778 HPRD:03201 CYP4A11 CP4Y|CYP4A2|CYP4AII cytochrome P450, family 4, subfamily A, polypeptide 11 protein-coding 13-PTNLD9-TUMOR_peak_1395 chr1 42366312 42366559 + 4.34931 NA intron (NR_038260, intron 1 of 2) L2b|LINE|L2 17943 NM_024503 59269 Hs.403972 NM_024503 HPRD:09442 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 13-PTNLD9-TUMOR_peak_35213 chr3 101546605 101546897 + 4.34931 NA promoter-TSS (NM_001005474) promoter-TSS (NM_001005474) -83 NM_001005474 64332 Hs.319171 NM_031419 HPRD:09217 NFKBIZ IKBZ|INAP|MAIL nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta protein-coding 13-PTNLD9-TUMOR_peak_56393 chrX 117481256 117481350 + 4.34931 NA intron (NM_001184966, intron 1 of 17) intron (NM_001184966, intron 1 of 17) 1267 NM_001184966 54521 Hs.98510 NM_019045 HPRD:11682 WDR44 RAB11BP|RPH11 WD repeat domain 44 protein-coding 13-PTNLD9-TUMOR_peak_8896 chr11 4829855 4830023 + 4.34931 NA Intergenic Intergenic -4329 NM_001005177 119695 Hs.553563 NM_001005177 HPRD:15024 OR52R1 OR11-22 olfactory receptor, family 52, subfamily R, member 1 protein-coding 13-PTNLD9-TUMOR_peak_25909 chr2 126290 126494 + 4.34931 NA Intergenic SVA_E|Other|Other -79804 NM_001077710 642273 Hs.8379 NM_001077710 FAM110C - family with sequence similarity 110, member C protein-coding 13-PTNLD9-TUMOR_peak_54670 chr9 124359025 124359119 + 4.34780 NA intron (NM_032552, intron 1 of 16) L1ME3C|LINE|L1 29691 NM_032552 153090 Hs.522378 NM_032552 HPRD:09903 DAB2IP AF9Q34|AIP-1|AIP1|DIP1/2 DAB2 interacting protein protein-coding 13-PTNLD9-TUMOR_peak_35883 chr3 129813110 129813273 + 4.34750 NA intron (NM_001136152, intron 4 of 7) intron (NM_001136152, intron 4 of 7) 12517 NM_001136152 644974 Hs.722197 NM_001136152 ENSG00000251287 ALG1L2 - ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase-like 2 protein-coding 13-PTNLD9-TUMOR_peak_52269 chr8 139204196 139204509 + 4.34496 NA intron (NM_015912, intron 9 of 19) intron (NM_015912, intron 9 of 19) 304713 NM_015912 51059 Hs.126024 NM_015912 HPRD:14230 FAM135B C8ORFK32 family with sequence similarity 135, member B protein-coding 13-PTNLD9-TUMOR_peak_19697 chr16 70623936 70624311 + 4.34496 NA intron (NM_001172771, intron 1 of 6) intron (NM_001172771, intron 1 of 6) 10325 NM_152456 146433 Hs.461214 NM_152456 HPRD:14582 IL34 C16orf77|IL-34 interleukin 34 protein-coding 13-PTNLD9-TUMOR_peak_44101 chr6 22888671 22888925 + 4.34496 NA Intergenic Intergenic 319120 NM_138574 154150 Hs.629246 NM_138574 HPRD:17935 HDGFL1 PWWP1|dJ309H15.1 hepatoma derived growth factor-like 1 protein-coding 13-PTNLD9-TUMOR_peak_21128 chr17 41512207 41512327 + 4.34496 NA Intergenic Intergenic -9907 NR_031751 100313779 NR_031751 miRBase:MI0010636 MIR2117 - microRNA 2117 ncRNA 13-PTNLD9-TUMOR_peak_15999 chr14 64215693 64215911 + 4.34496 NA Intergenic LTR9|LTR|ERV1 -21046 NM_030791 81537 Hs.24678 NM_030791 HPRD:10226 SGPP1 SPPase1 sphingosine-1-phosphate phosphatase 1 protein-coding 13-PTNLD9-TUMOR_peak_31674 chr20 56039085 56039188 + 4.34496 NA Intergenic Intergenic 60787 NM_001269041 140690 Hs.131543 NM_080618 HPRD:09512 CTCFL BORIS|CT27|CTCF-T|HMGB1L1|dJ579F20.2 CCCTC-binding factor (zinc finger protein)-like protein-coding 13-PTNLD9-TUMOR_peak_31387 chr20 48406664 48406839 + 4.34496 NA Intergenic Intergenic -22499 NR_048538 23315 Hs.444202 NM_015266 HPRD:18062 SLC9A8 NHE-8|NHE8 solute carrier family 9, subfamily A (NHE8, cation proton antiporter 8), member 8 protein-coding 13-PTNLD9-TUMOR_peak_38624 chr4 77356070 77356401 + 4.34496 NA promoter-TSS (NM_020859) promoter-TSS (NM_020859) -18 NM_020859 57619 Hs.702168 NM_020859 HPRD:07053 SHROOM3 APXL3|SHRM|ShrmL shroom family member 3 protein-coding 13-PTNLD9-TUMOR_peak_36248 chr3 142926259 142926425 + 4.34496 NA Intergenic Intergenic 87724 NM_004267 9435 Hs.8786 NM_004267 CHST2 C6ST|GST-2|GST2|Gn6ST-1|HEL-S-75|glcNAc6ST-1 carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2 protein-coding 13-PTNLD9-TUMOR_peak_21641 chr17 57287248 57287418 + 4.34496 NA promoter-TSS (NM_018149) promoter-TSS (NM_018149) -38 NM_018149 55181 Hs.7296 NM_018149 HPRD:08551 SMG8 C17orf71 SMG8 nonsense mediated mRNA decay factor protein-coding 13-PTNLD9-TUMOR_peak_22201 chr17 77302290 77302463 + 4.34496 NA intron (NM_001082575, intron 3 of 14) intron (NM_001082575, intron 3 of 14) 209854 NM_001082575 146713 Hs.135229 NM_001025448 HPRD:18730 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding protein, fox-1 homolog (C. elegans) 3 protein-coding 13-PTNLD9-TUMOR_peak_33291 chr22 39650991 39651100 + 4.34496 NA Intergenic Intergenic -10088 NM_002608 5155 Hs.1976 NM_002608 HPRD:01815 PDGFB IBGC5|PDGF-2|PDGF2|SIS|SSV|c-sis platelet-derived growth factor beta polypeptide protein-coding 13-PTNLD9-TUMOR_peak_26756 chr2 44588618 44588761 + 4.34496 NA promoter-TSS (NM_001171613) promoter-TSS (NM_001171613) 11 NM_001171613 9581 Hs.444349 NM_006036 HPRD:17189 PREPL - prolyl endopeptidase-like protein-coding 13-PTNLD9-TUMOR_peak_26626 chr2 38603407 38603597 + 4.33835 NA intron (NM_001135673, intron 1 of 12) intron (NM_001135673, intron 1 of 12) 930 NM_022374 64225 Hs.727652 NM_022374 HPRD:10662 ATL2 ARL3IP2|ARL6IP2|atlastin2 atlastin GTPase 2 protein-coding 13-PTNLD9-TUMOR_peak_34431 chr3 46152248 46152417 + 4.33835 NA Intergenic MLT1H|LTR|ERVL-MaLR -83353 NM_005283 2829 Hs.248116 NM_005283 HPRD:02774 XCR1 CCXCR1|GPR5 chemokine (C motif) receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_4594 chr1 179924100 179924252 + 4.33727 NA 5' UTR (NM_014810, exon 1 of 38) 5' UTR (NM_014810, exon 1 of 38) 268 NM_014810 9857 Hs.413045 NM_014810 HPRD:09870 CEP350 CAP350|GM133 centrosomal protein 350kDa protein-coding 13-PTNLD9-TUMOR_peak_33583 chr3 4792856 4793023 + 4.33727 NA non-coding (NR_004428, exon 1 of 2) non-coding (NR_004428, exon 1 of 2) 335 NR_004428 100126791 Hs.663059 NR_004428 ENSG00000235947 EGOT EGO|NCRNA00190 eosinophil granule ontogeny transcript (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_30917 chr20 35172697 35173036 + 4.33577 NA intron (NM_006097, intron 1 of 3) intron (NM_006097, intron 1 of 3) 2979 NM_181526 10398 Hs.504687 NM_006097 HPRD:17619 MYL9 LC20|MLC-2C|MLC2|MRLC1|MYRL2 myosin, light chain 9, regulatory protein-coding 13-PTNLD9-TUMOR_peak_20705 chr17 22258496 22258727 + 4.33177 NA Intergenic ALR/Alpha|Satellite|centr 236174 NM_001190452 100462977 Hs.740185 NM_001190452 ENSG00000256618 MTRNR2L1 HN1 MT-RNR2-like 1 protein-coding 13-PTNLD9-TUMOR_peak_54350 chr9 110473901 110474117 + 4.32702 NA Intergenic Intergenic -221962 NM_004235 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel-like factor 4 (gut) protein-coding 13-PTNLD9-TUMOR_peak_45199 chr6 46138324 46138418 + 4.32702 NA intron (NM_001290072, intron 1 of 4) intron (NM_001290072, intron 1 of 4) 376 NM_001290072 59084 Hs.35198 NM_021572 HPRD:13272 ENPP5 NPP-5 ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative) protein-coding 13-PTNLD9-TUMOR_peak_42292 chr5 139142507 139142617 + 4.32702 NA Intergenic Intergenic -16754 NR_105053 101929696 Hs.147408 NR_105052 ENSG00000249131 LOC101929696 - uncharacterized LOC101929696 ncRNA 13-PTNLD9-TUMOR_peak_49039 chr7 129480755 129480893 + 4.32702 NA intron (NM_182697, intron 3 of 4) MER20|DNA|hAT-Charlie -65970 NR_029615 406959 NR_029615 miRBase:MI0000273 MIR183 MIRN183|miR-183|miRNA183 microRNA 183 ncRNA 13-PTNLD9-TUMOR_peak_51710 chr8 119356291 119356468 + 4.32702 NA intron (NR_109794, intron 4 of 4) intron (NR_109794, intron 4 of 4) -232321 NM_000127 2131 Hs.492618 NM_000127 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_1982 chr1 60893053 60893147 + 4.31898 NA Intergenic Intergenic -353658 NM_152377 127795 Hs.47385 NM_152377 HPRD:11338 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 13-PTNLD9-TUMOR_peak_51453 chr8 102586813 102586956 + 4.31898 NA intron (NM_024915, intron 6 of 15) intron (NM_024915, intron 6 of 15) 82216 NM_024915 79977 Hs.661088 NM_024915 HPRD:10545 GRHL2 BOM|DFNA28|TFCP2L3 grainyhead-like 2 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_18796 chr16 23796192 23796365 + 4.31898 NA Intergenic Intergenic 30330 NM_022097 63928 Hs.178589 NM_022097 HPRD:14259 CHP2 - calcineurin-like EF-hand protein 2 protein-coding 13-PTNLD9-TUMOR_peak_42777 chr5 156817733 156817880 + 4.31898 NA intron (NM_001037333, intron 30 of 30) intron (NM_001037333, intron 30 of 30) -45077 NM_001001343 408263 Hs.437066 NM_001001343 HPRD:17524 FNDC9 C5orf40 fibronectin type III domain containing 9 protein-coding 13-PTNLD9-TUMOR_peak_47154 chr7 29724181 29724384 + 4.31898 NA promoter-TSS (NR_036482) promoter-TSS (NR_036482) 472 NR_024278 646762 Hs.30579 NR_024278 LOC646762 - uncharacterized LOC646762 ncRNA 13-PTNLD9-TUMOR_peak_45549 chr6 79356873 79357080 + 4.31898 NA Intergenic L1PA4|LINE|L1 -220285 NM_001010844 134728 Hs.656212 NM_001010844 HPRD:17157 IRAK1BP1 AIP70|SIMPL interleukin-1 receptor-associated kinase 1 binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_17740 chr15 78933880 78933999 + 4.31898 NA promoter-TSS (NM_000750) promoter-TSS (NM_000750) -352 NM_001256567 1143 Hs.624178 NM_000750 HPRD:00337 CHRNB4 - cholinergic receptor, nicotinic, beta 4 (neuronal) protein-coding 13-PTNLD9-TUMOR_peak_20897 chr17 34607945 34608039 + 4.31898 NA Intergenic MLT1J-int|LTR|ERVL-MaLR -15996 NM_032258 84218 Hs.617010 NM_032258 HPRD:09667 TBC1D3F TBC1D3|TBC1D3G TBC1 domain family, member 3F protein-coding 13-PTNLD9-TUMOR_peak_55553 chrX 13711604 13711792 + 4.31898 NA intron (NM_001195328, intron 1 of 1) intron (NM_001195328, intron 1 of 1) 4458 NM_004251 9367 Hs.495704 NM_004251 RAB9A RAB9 RAB9A, member RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_6060 chr1 240929010 240929283 + 4.31898 NA Intergenic Intergenic -153684 NM_022469 64388 Hs.98206 NM_022469 HPRD:16390 GREM2 CKTSF1B2|DAND3|PRDC gremlin 2, DAN family BMP antagonist protein-coding 13-PTNLD9-TUMOR_peak_24813 chr19 36909459 36909611 + 4.31898 NA promoter-TSS (NM_133466) promoter-TSS (NM_133466) 15 NM_133466 284406 Hs.558734 NM_133466 HPRD:11725 ZFP82 ZNF545 ZFP82 zinc finger protein protein-coding 13-PTNLD9-TUMOR_peak_26602 chr2 37899675 37899901 + 4.31872 NA promoter-TSS (NM_006449) promoter-TSS (NM_006449) -110 NM_001270436 10602 Hs.369574 NM_006449 HPRD:09364 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein (Rho GTPase binding) 3 protein-coding 13-PTNLD9-TUMOR_peak_16955 chr15 32163118 32163241 + 4.31872 NA Intergenic Intergenic -159507 NM_000746 1139 Hs.511772 NM_000746 CHRNA7 CHRNA7-2|NACHRA7 cholinergic receptor, nicotinic, alpha 7 (neuronal) protein-coding 13-PTNLD9-TUMOR_peak_1249 chr1 39733975 39734183 + 4.31872 NA intron (NM_012090, intron 5 of 92) intron (NM_012090, intron 5 of 92) -141097 NM_015038 643314 Hs.658760 NM_015038 ENSG00000255103 KIAA0754 - KIAA0754 protein-coding 13-PTNLD9-TUMOR_peak_1730 chr1 49397312 49397799 + 4.31872 NA intron (NM_032785, intron 5 of 13) intron (NM_032785, intron 5 of 13) -155008 NM_024603 79656 Hs.475348 NM_024603 BEND5 C1orf165 BEN domain containing 5 protein-coding 13-PTNLD9-TUMOR_peak_10130 chr11 63768089 63768183 + 4.31872 NA intron (NM_014067, intron 4 of 10) CpG-4255 14811 NM_017670 55611 Hs.473788 NM_017670 OTUB1 OTB1|OTU1 OTU deubiquitinase, ubiquitin aldehyde binding 1 protein-coding 13-PTNLD9-TUMOR_peak_12934 chr12 54762562 54762674 + 4.31872 NA TTS (NM_001290002) TTS (NM_001290002) -4348 NM_020370 53831 Hs.306199 NM_020370 HPRD:16213 GPR84 EX33|GPCR4 G protein-coupled receptor 84 protein-coding 13-PTNLD9-TUMOR_peak_21503 chr17 49223466 49223642 + 4.31872 NA Intergenic AluSz|SINE|Alu -7343 NM_001018136 654364 Hs.463456 NM_001018136 ENSG00000011052 NME1-NME2 NM23-LV|NMELV NME1-NME2 readthrough protein-coding 13-PTNLD9-TUMOR_peak_30785 chr20 31410983 31411077 + 4.31799 NA intron (NM_012325, intron 1 of 6) MIR3|SINE|MIR 3331 NM_012325 22919 Hs.472437 NM_012325 HPRD:04379 MAPRE1 EB1 microtubule-associated protein, RP/EB family, member 1 protein-coding 13-PTNLD9-TUMOR_peak_10985 chr11 95889384 95889780 + 4.31799 NA intron (NM_032427, intron 1 of 4) intron (NM_032427, intron 1 of 4) -185020 NR_036125 100422991 NR_036125 miRBase:MI0014197 MIR1260B - microRNA 1260b ncRNA 13-PTNLD9-TUMOR_peak_35751 chr3 126762031 126762129 + 4.31799 NA Intergenic Intergenic 54643 NM_032242 5361 Hs.432329 NM_032242 HPRD:11868 PLXNA1 NOV|NOVP|PLEXIN-A1|PLXN1 plexin A1 protein-coding 13-PTNLD9-TUMOR_peak_49032 chr7 129419442 129419656 + 4.31799 NA Intergenic CpG -4695 NR_029615 406959 NR_029615 miRBase:MI0000273 MIR183 MIRN183|miR-183|miRNA183 microRNA 183 ncRNA 13-PTNLD9-TUMOR_peak_23926 chr19 10387602 10387784 + 4.31799 NA intron (NM_000201, intron 2 of 6) intron (NM_000201, intron 2 of 6) 6176 NM_000201 3383 Hs.643447 NM_000201 HPRD:00996 ICAM1 BB2|CD54|P3.58 intercellular adhesion molecule 1 protein-coding 13-PTNLD9-TUMOR_peak_36056 chr3 136471854 136472014 + 4.31683 NA promoter-TSS (NM_005862) promoter-TSS (NM_005862) -689 NM_005862 10274 Hs.412586 NM_005862 HPRD:05076 STAG1 SA1|SCC3A stromal antigen 1 protein-coding 13-PTNLD9-TUMOR_peak_5703 chr1 228350182 228350331 + 4.31612 NA Intergenic Intergenic 2293 NR_103539 574432 Hs.568467 NR_103539 ENSG00000203684 IBA57-AS1 C1orf148 IBA57 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_15561 chr14 35872364 35872458 + 4.31004 NA exon (NM_020529, exon 3 of 6) exon (NM_020529, exon 3 of 6) 1549 NM_020529 4792 Hs.81328 NM_020529 HPRD:01235 NFKBIA IKBA|MAD-3|NFKBI nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha protein-coding 13-PTNLD9-TUMOR_peak_20433 chr17 8129879 8130079 + 4.31004 NA non-coding (NR_046431, exon 22 of 22) non-coding (NR_046431, exon 22 of 22) -2618 NR_026951 284029 Hs.121692 NM_173621 HPRD:08755 LINC00324 C17orf44|NCRNA00324 long intergenic non-protein coding RNA 324 ncRNA 13-PTNLD9-TUMOR_peak_38663 chr4 78739399 78739550 + 4.31004 NA intron (NM_144571, intron 1 of 11) intron (NM_144571, intron 1 of 11) 1070 NM_001286790 246175 Hs.592519 NM_144571 HPRD:10841 CNOT6L CCR4b CCR4-NOT transcription complex, subunit 6-like protein-coding 13-PTNLD9-TUMOR_peak_28156 chr2 114361423 114361517 + 4.30999 NA promoter-TSS (NR_024004) promoter-TSS (NR_024004) -176 NR_024004 84771 Hs.712940 NR_024004 ENSG00000236397 DDX11L2 - DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 2 pseudo 13-PTNLD9-TUMOR_peak_50020 chr8 7896583 7896680 + 4.30409 NA Intergenic HERVE-int|LTR|ERV1 -41588 NR_003668 641517 Hs.616079 NM_001037380 ENSG00000206034 DEFB109P1B DEF109P1B|DEFB109 defensin, beta 109, pseudogene 1B pseudo 13-PTNLD9-TUMOR_peak_19550 chr16 66932326 66932441 + 4.30409 NA Intergenic MER6A|DNA|TcMar-Tigger 18000 NM_020786 57546 Hs.632214 NM_020786 HPRD:15112 PDP2 PPM2C2 pyruvate dehyrogenase phosphatase catalytic subunit 2 protein-coding 13-PTNLD9-TUMOR_peak_43252 chr5 177775469 177775622 + 4.30409 NA intron (NM_173465, intron 2 of 28) intron (NM_173465, intron 2 of 28) -115722 NR_103509 85007 Hs.248746 NM_153373 HPRD:18482 PHYKPL AGXT2L2|PHLU 5-phosphohydroxy-L-lysine phospho-lyase protein-coding 13-PTNLD9-TUMOR_peak_51236 chr8 86574252 86574446 + 4.29996 NA non-coding (NR_003594, exon 1 of 1).2 non-coding (NR_003594, exon 1 of 1).2 393 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2 (pseudogene) pseudo 13-PTNLD9-TUMOR_peak_3408 chr1 147695128 147695263 + 4.29654 NA intron (NR_120331, intron 3 of 4) intron (NR_120331, intron 3 of 4) 24147 NR_120331 101927468 Hs.515867 NR_120331 LOC101927468 - uncharacterized LOC101927468 ncRNA 13-PTNLD9-TUMOR_peak_47 chr1 911850 911948 + 4.29654 NA exon (NM_001291367, exon 4 of 5) exon (NM_001291367, exon 4 of 5) 5598 NM_001291366 84808 Hs.271462 NM_032722 ENSG00000187642 PERM1 C1orf170 PPARGC1 and ESRR induced regulator, muscle 1 protein-coding 13-PTNLD9-TUMOR_peak_25217 chr19 47538887 47538991 + 4.29654 NA intron (NM_002517, intron 4 of 10) intron (NM_002517, intron 4 of 10) 12943 NM_017854 54958 Hs.105606 NM_017854 HPRD:07920 TMEM160 - transmembrane protein 160 protein-coding 13-PTNLD9-TUMOR_peak_28807 chr2 157257301 157257403 + 4.29654 NA Intergenic tRNA-Ala-GCG|tRNA|tRNA -34613 NM_001083112 2820 Hs.512382 NM_000408 HPRD:00715 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 (mitochondrial) protein-coding 13-PTNLD9-TUMOR_peak_52168 chr8 134353849 134353943 + 4.29226 NA Intergenic Intergenic -44349 NM_006096 10397 Hs.372914 NM_006096 HPRD:05586 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 13-PTNLD9-TUMOR_peak_40926 chr5 56029602 56029702 + 4.29226 NA Intergenic Intergenic -81248 NM_005921 4214 Hs.653654 NM_005921 ENSG00000095015 MAP3K1 MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6 mitogen-activated protein kinase kinase kinase 1, E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_50987 chr8 56852538 56852747 + 4.29226 NA intron (NM_001111097, intron 1 of 12) intron (NM_001111097, intron 1 of 12) 60256 NM_002350 4067 Hs.491767 NM_002350 HPRD:01301 LYN JTK8|p53Lyn|p56Lyn LYN proto-oncogene, Src family tyrosine kinase protein-coding 13-PTNLD9-TUMOR_peak_16888 chr15 29969195 29969528 + 4.29226 NA Intergenic Intergenic -106434 NM_015307 23359 Hs.383564 NM_015307 ENSG00000104059 FAM189A1 TMEM228 family with sequence similarity 189, member A1 protein-coding 13-PTNLD9-TUMOR_peak_24102 chr19 13076512 13076631 + 4.29226 NA Intergenic Intergenic -3861 NM_152654 199699 Hs.331981 NM_152654 HPRD:08788 DAND5 CER2|CERL2|CKTSF1B3|COCO|CRL2|DANTE|GREM3|SP1 DAN domain family member 5, BMP antagonist protein-coding 13-PTNLD9-TUMOR_peak_27075 chr2 64833677 64833884 + 4.29226 NA promoter-TSS (NR_034023) promoter-TSS (NR_034023) -666 NR_034023 339807 Hs.434736 NR_034023 ENSG00000233694 LOC339807 - uncharacterized LOC339807 ncRNA 13-PTNLD9-TUMOR_peak_48949 chr7 127623929 127624172 + 4.29226 NA intron (NM_014390, intron 15 of 23) L3b|LINE|CR1 -13512 NR_027330 27099 Hs.657377 NM_014411 SND1-IT1 C7orf54|NAG8|NSG-X SND1 intronic transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_32428 chr21 43805833 43806030 + 4.29226 NA intron (NR_046020, intron 5 of 12) intron (NR_046020, intron 5 of 12) 3327 NM_032404 64699 Hs.208600 NM_024022 HPRD:05696 TMPRSS3 DFNB10|DFNB8|ECHOS1|TADG12 transmembrane protease, serine 3 protein-coding 13-PTNLD9-TUMOR_peak_13942 chr12 116871996 116872115 + 4.29226 NA Intergenic Intergenic -5932 NR_039683 100616309 NR_039683 miRBase:MI0016824 MIR4472-2 - microRNA 4472-2 ncRNA 13-PTNLD9-TUMOR_peak_26222 chr2 18060536 18060794 + 4.29226 NA intron (NM_002252, intron 1 of 2) CpG 741 NM_002252 3790 Hs.414489 NM_002252 HPRD:04865 KCNS3 KV9.3 potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3 protein-coding 13-PTNLD9-TUMOR_peak_23972 chr19 11050589 11050701 + 4.29110 NA Intergenic AluSx|SINE|Alu 11221 NM_138358 90580 Hs.164026 NM_138358 HPRD:14275 C19orf52 - chromosome 19 open reading frame 52 protein-coding 13-PTNLD9-TUMOR_peak_35066 chr3 84741497 84741643 + 4.28954 NA intron (NR_033860, intron 14 of 20) intron (NR_033860, intron 14 of 20) 177156 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 13-PTNLD9-TUMOR_peak_1525 chr1 44551008 44551162 + 4.28954 NA Intergenic L2a|LINE|L2 -33437 NM_173484 128209 Hs.567674 NM_173484 HPRD:08272 KLF17 ZNF393|Zfp393 Kruppel-like factor 17 protein-coding 13-PTNLD9-TUMOR_peak_11438 chr11 121322909 121323060 + 4.28954 NA promoter-TSS (NM_003105) promoter-TSS (NM_003105) 72 NM_003105 6653 Hs.368592 NM_003105 HPRD:03595 SORL1 C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250 sortilin-related receptor, L(DLR class) A repeats containing protein-coding 13-PTNLD9-TUMOR_peak_24824 chr19 37263661 37263781 + 4.28954 NA promoter-TSS (NM_001267779) promoter-TSS (NM_001267779) -5 NM_001193552 342892 Hs.406307 NM_001193552 ENSG00000267041 ZNF850 ZNF850P zinc finger protein 850 protein-coding 13-PTNLD9-TUMOR_peak_53108 chr9 35406743 35406837 + 4.28954 NA promoter-TSS (NR_110320) promoter-TSS (NR_110320) 38 NR_003581 158381 Hs.575661 NR_003581 HPRD:18739 ATP8B5P FetA ATPase, class I, type 8B, member 5, pseudogene pseudo 13-PTNLD9-TUMOR_peak_46578 chr6 169852257 169852386 + 4.28954 NA Intergenic CpG -198112 NM_003247 7058 Hs.371147 NM_003247 HPRD:01766 THBS2 TSP2 thrombospondin 2 protein-coding 13-PTNLD9-TUMOR_peak_42512 chr5 146684825 146684965 + 4.28954 NA intron (NM_001112724, intron 4 of 12) MER61B|LTR|ERV1 70316 NM_145001 202374 Hs.585069 NM_145001 HPRD:15445 STK32A YANK1 serine/threonine kinase 32A protein-coding 13-PTNLD9-TUMOR_peak_17400 chr15 62429584 62429723 + 4.28954 NA Intergenic Intergenic 27829 NM_001007595 388125 Hs.144372 NM_001007595 HPRD:17636 C2CD4B FAM148B|NLF2 C2 calcium-dependent domain containing 4B protein-coding 13-PTNLD9-TUMOR_peak_10925 chr11 93638625 93638725 + 4.28954 NA Intergenic MIR|SINE|MIR -55007 NM_001144871 387804 Hs.512252 NM_001144871 VSTM5 C11orf90 V-set and transmembrane domain containing 5 protein-coding 13-PTNLD9-TUMOR_peak_24287 chr19 16692208 16692319 + 4.28954 NA intron (NM_004831, intron 1 of 2) intron (NM_004831, intron 1 of 2) -9070 NM_024881 79939 Hs.620596 NM_024881 HPRD:15373 SLC35E1 - solute carrier family 35, member E1 protein-coding 13-PTNLD9-TUMOR_peak_8583 chr10 127936155 127936331 + 4.28954 NA intron (NM_001288975, intron 3 of 18) intron (NM_001288975, intron 3 of 18) 140884 NM_001288975 8038 Hs.594351 NM_003474 HPRD:04092 ADAM12 ADAM12-OT1|CAR10|MCMP|MCMPMltna|MLTN|MLTNA ADAM metallopeptidase domain 12 protein-coding 13-PTNLD9-TUMOR_peak_19534 chr16 66549627 66549754 + 4.28430 NA intron (NM_001271935, intron 6 of 7) intron (NM_001271935, intron 6 of 7) 34038 NM_001272050 7084 Hs.512619 NM_004614 HPRD:01770 TK2 MTDPS2|MTTK thymidine kinase 2, mitochondrial protein-coding 13-PTNLD9-TUMOR_peak_26668 chr2 39952830 39952930 + 4.28140 NA Intergenic Intergenic 53536 NM_025264 80745 Hs.468254 NM_025264 HPRD:15506 THUMPD2 C2orf8 THUMP domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_18230 chr16 2140879 2141048 + 4.28140 NA promoter-TSS (NR_030646) promoter-TSS (NR_030646) -678 NR_030646 100188847 NR_030646 MIR1225 MIRN1225 microRNA 1225 ncRNA 13-PTNLD9-TUMOR_peak_39038 chr4 108785045 108785201 + 4.28140 NA intron (NM_001136258, intron 2 of 6) L2b|LINE|L2 -29297 NM_152621 166929 Hs.595423 NM_152621 HPRD:11323 SGMS2 SMS2 sphingomyelin synthase 2 protein-coding 13-PTNLD9-TUMOR_peak_28365 chr2 127864867 127864976 + 4.28140 NA promoter-TSS (NM_139346) promoter-TSS (NM_139346) -18 NM_139344 274 Hs.193163 NM_004305 HPRD:03150 BIN1 AMPH2|AMPHL|SH3P9 bridging integrator 1 protein-coding 13-PTNLD9-TUMOR_peak_7730 chr10 74090642 74090819 + 4.28140 NA Intergenic AluY|SINE|Alu 24177 NM_001002762 54788 Hs.500013 NM_017626 HPRD:07086 DNAJB12 DJ10 DnaJ (Hsp40) homolog, subfamily B, member 12 protein-coding 13-PTNLD9-TUMOR_peak_36820 chr3 177239129 177239252 + 4.28140 NA intron (NR_047568, intron 1 of 3) MER1B|DNA|hAT-Charlie 79481 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 13-PTNLD9-TUMOR_peak_28561 chr2 135810123 135810240 + 4.27636 NA intron (NM_001172435, intron 2 of 24) intron (NM_001172435, intron 2 of 24) 346 NM_001172435 22930 Hs.306327 NM_012233 HPRD:16002 RAB3GAP1 P130|RAB3GAP|RAB3GAP130|WARBM1 RAB3 GTPase activating protein subunit 1 (catalytic) protein-coding 13-PTNLD9-TUMOR_peak_25890 chr1_gl000192_random 444474 444609 + 4.27636 NA intron (NR_120328, intron 3 of 4) intron (NR_120328, intron 3 of 4) 24142 NR_120328 102724558 Hs.712738 NR_120328 LOC102724558 - uncharacterized LOC102724558 ncRNA 13-PTNLD9-TUMOR_peak_10986 chr11 95890280 95890403 + 4.27636 NA intron (NM_032427, intron 1 of 4) intron (NM_032427, intron 1 of 4) -184261 NR_036125 100422991 NR_036125 miRBase:MI0014197 MIR1260B - microRNA 1260b ncRNA 13-PTNLD9-TUMOR_peak_46781 chr7 5457087 5457183 + 4.27636 NA intron (NM_001080495, intron 2 of 29) intron (NM_001080495, intron 2 of 29) 6042 NM_001080495 84629 Hs.520638 NM_001013722 ENSG00000182095 TNRC18 CAGL79|TNRC18A trinucleotide repeat containing 18 protein-coding 13-PTNLD9-TUMOR_peak_40156 chr5 690494 690590 + 4.27365 NA intron (NM_007030, intron 1 of 3) intron (NM_007030, intron 1 of 3) 2968 NM_007030 11076 Hs.481466 NM_007030 HPRD:18522 TPPP TPPP/p25|TPPP1|p24|p25|p25alpha tubulin polymerization promoting protein protein-coding 13-PTNLD9-TUMOR_peak_10065 chr11 62320745 62320839 + 4.27338 NA Intergenic Intergenic -6460 NM_001620 79026 Hs.502756 NM_001620 HPRD:14684 AHNAK AHNAKRS AHNAK nucleoprotein protein-coding 13-PTNLD9-TUMOR_peak_21780 chr17 62830381 62830520 + 4.27260 NA intron (NR_024386, intron 1 of 10) intron (NR_024386, intron 1 of 10) 2852 NR_024386 440456 Hs.646585 NR_024386 PLEKHM1P - pleckstrin homology domain containing, family M (with RUN domain) member 1 pseudogene pseudo 13-PTNLD9-TUMOR_peak_35993 chr3 133668433 133668533 + 4.27260 NA intron (NM_005630, intron 6 of 13) intron (NM_005630, intron 6 of 13) -19827 NM_025041 80111 Hs.287691 NM_025041 HPRD:07981 C3orf36 - chromosome 3 open reading frame 36 protein-coding 13-PTNLD9-TUMOR_peak_1258 chr1 39876591 39876765 + 4.26674 NA exon (NM_015038, exon 1 of 1) exon (NM_015038, exon 1 of 1) 1502 NM_015038 643314 Hs.658760 NM_015038 ENSG00000255103 KIAA0754 - KIAA0754 protein-coding 13-PTNLD9-TUMOR_peak_8684 chr10 135171413 135171507 + 4.26666 NA promoter-TSS (NM_001098483) promoter-TSS (NM_001098483) 69 NM_001098483 282969 Hs.155823 NM_198472 HPRD:12564 FUOM C10orf125|FUCU|FucM fucose mutarotase protein-coding 13-PTNLD9-TUMOR_peak_45020 chr6 42115905 42116159 + 4.26666 NA Intergenic Intergenic -5317 NM_001164446 647024 Hs.444277 NM_001164446 ENSG00000188112 C6orf132 bA7K24.2 chromosome 6 open reading frame 132 protein-coding 13-PTNLD9-TUMOR_peak_8864 chr11 3576539 3576635 + 4.26666 NA Intergenic Intergenic -71103 NR_002720 7221 Hs.131910 NR_002720 ENSG00000182048 TRPC2 - transient receptor potential cation channel, subfamily C, member 2, pseudogene pseudo 13-PTNLD9-TUMOR_peak_12591 chr12 42631353 42631535 + 4.26666 NA exon (NM_005748, exon 2 of 4) exon (NM_005748, exon 2 of 4) 645 NM_001190977 10138 Hs.649195 NM_005748 HPRD:09606 YAF2 - YY1 associated factor 2 protein-coding 13-PTNLD9-TUMOR_peak_16446 chr14 91765962 91766056 + 4.26666 NA intron (NM_001080414, intron 21 of 29) intron (NM_001080414, intron 21 of 29) -45785 NM_003485 8111 Hs.8882 NM_003485 HPRD:03241 GPR68 GPR12A|OGR1 G protein-coupled receptor 68 protein-coding 13-PTNLD9-TUMOR_peak_33521 chr22 50978158 50978256 + 4.26666 NA Intergenic MER57F|LTR|ERV1 -7199 NM_001014440 440836 Hs.531314 NM_001014440 HPRD:18640 ODF3B ODF3L3 outer dense fiber of sperm tails 3B protein-coding 13-PTNLD9-TUMOR_peak_8771 chr11 1072271 1072484 + 4.26666 NA Intergenic Intergenic -2498 NM_002457 4583 Hs.315 NM_002457 HPRD:11828 MUC2 MLP|MUC-2|SMUC mucin 2, oligomeric mucus/gel-forming protein-coding 13-PTNLD9-TUMOR_peak_55800 chrX 47420728 47420843 + 4.26666 NA intron (NM_001256196, intron 1 of 15) CpG 286 NM_001256196 369 Hs.446641 NM_001654 HPRD:02405 ARAF A-RAF|ARAF1|PKS2|RAFA1 A-Raf proto-oncogene, serine/threonine kinase protein-coding 13-PTNLD9-TUMOR_peak_2766 chr1 109914227 109914329 + 4.26666 NA intron (NM_002959, intron 1 of 19) intron (NM_002959, intron 1 of 19) 21701 NM_001205228 6272 Hs.485195 NM_002959 HPRD:03910 SORT1 Gp95|LDLCQ6|NT3 sortilin 1 protein-coding 13-PTNLD9-TUMOR_peak_2280 chr1 82268594 82268760 + 4.26666 NA intron (NM_001297706, intron 1 of 18) CpG 2595 NM_012302 23266 Hs.24212 NM_012302 HPRD:06116 LPHN2 CIRL2|CL2|LEC1|LPHH1 latrophilin 2 protein-coding 13-PTNLD9-TUMOR_peak_6468 chr10 11784421 11784789 + 4.26666 NA exon (NM_024693, exon 1 of 5) exon (NM_024693, exon 1 of 5) 249 NM_024693 79746 Hs.22242 NM_024693 HPRD:10930 ECHDC3 - enoyl CoA hydratase domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_3695 chr1 153003535 153003644 + 4.26666 NA promoter-TSS (NM_003125) promoter-TSS (NM_003125) -90 NM_003125 6699 Hs.1076 NM_003125 HPRD:01648 SPRR1B CORNIFIN|GADD33|SPRR1 small proline-rich protein 1B protein-coding 13-PTNLD9-TUMOR_peak_50853 chr8 47868714 47868808 + 4.25973 NA Intergenic Intergenic 116253 NR_027013 497634 Hs.406982 NR_027012 ENSG00000253314 LINC00293 BEYLA|NCRNA00293 long intergenic non-protein coding RNA 293 ncRNA 13-PTNLD9-TUMOR_peak_20430 chr17 8103611 8103748 + 4.25973 NA Intergenic MER50C|LTR|ERV1 -10115 NM_017622 54785 Hs.129563 NM_017622 HPRD:13368 C17orf59 PRO2472 chromosome 17 open reading frame 59 protein-coding 13-PTNLD9-TUMOR_peak_1251 chr1 39759133 39759304 + 4.25973 NA exon (NM_012090, exon 17 of 93) exon (NM_012090, exon 17 of 93) -115958 NM_015038 643314 Hs.658760 NM_015038 ENSG00000255103 KIAA0754 - KIAA0754 protein-coding 13-PTNLD9-TUMOR_peak_52668 chr9 4508567 4508676 + 4.25973 NA intron (NM_004170, intron 1 of 11) intron (NM_004170, intron 1 of 11) 18194 NM_004170 6505 Hs.444915 NM_004170 HPRD:00597 SLC1A1 EAAC1|EAAT3|SCZD18 solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1 protein-coding 13-PTNLD9-TUMOR_peak_47472 chr7 50108950 50109130 + 4.25973 NA intron (NM_007009, intron 3 of 7) HERV15-int|LTR|ERV1 23820 NM_001159878 11055 Hs.388841 NM_007009 HPRD:18364 ZPBP ZPBP1 zona pellucida binding protein protein-coding 13-PTNLD9-TUMOR_peak_37068 chr3 186490645 186490739 + 4.25973 NA Intergenic CpG -10669 NM_001967 1974 Hs.518475 NM_001967 HPRD:03062 EIF4A2 BM-010|DDX2B|EIF4A|EIF4F|eIF-4A-II|eIF4A-II eukaryotic translation initiation factor 4A2 protein-coding 13-PTNLD9-TUMOR_peak_5442 chr1 221135530 221135816 + 4.25973 NA Intergenic Intergenic -82191 NR_046901 100873924 Hs.645593 NR_046901 HLX-AS1 - HLX antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_30031 chr2 233470955 233471051 + 4.25973 NA intron (NM_001243252, intron 1 of 3) CpG 236 NM_001243252 80303 Hs.516769 NM_025202 HPRD:13265 EFHD1 MST133|MSTP133|SWS2 EF-hand domain family, member D1 protein-coding 13-PTNLD9-TUMOR_peak_38086 chr4 22517604 22517938 + 4.25973 NA promoter-TSS (NM_145290) promoter-TSS (NM_145290) -94 NM_145290 166647 Hs.99195 NM_145290 HPRD:11011 GPR125 PGR21|TEM5L G protein-coupled receptor 125 protein-coding 13-PTNLD9-TUMOR_peak_36627 chr3 164924817 164924932 + 4.25973 NA non-coding (NR_125764, exon 1 of 6) non-coding (NR_125764, exon 1 of 6) 126 NR_125764 103695433 Hs.570689 NR_125764 LINC01322 - long intergenic non-protein coding RNA 1322 ncRNA 13-PTNLD9-TUMOR_peak_29789 chr2 217357835 217357982 + 4.25973 NA Intergenic Intergenic -5612 NM_000998 6168 Hs.433701 NM_000998 RPL37A L37A ribosomal protein L37a protein-coding 13-PTNLD9-TUMOR_peak_44049 chr6 19839319 19839420 + 4.25896 NA intron (NM_001546, intron 2 of 2) intron (NM_001546, intron 2 of 2) 1768 NM_001546 3400 Hs.519601 NM_001546 ID4 IDB4|bHLHb27 inhibitor of DNA binding 4, dominant negative helix-loop-helix protein protein-coding 13-PTNLD9-TUMOR_peak_43853 chr6 13417849 13418122 + 4.25881 NA intron (NM_018988, intron 1 of 1) intron (NM_018988, intron 1 of 1) -9616 NM_001242630 54438 Hs.484686 NM_018988 HPRD:13574 GFOD1 ADG-90|C6orf114 glucose-fructose oxidoreductase domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_4871 chr1 197744434 197744670 + 4.25881 NA promoter-TSS (NM_001195216) promoter-TSS (NM_001195216) 71 NM_001300858 163486 Hs.125056 NM_019049 HPRD:13303 DENND1B C1ORF18|C1orf218|FAM31B DENN/MADD domain containing 1B protein-coding 13-PTNLD9-TUMOR_peak_4184 chr1 162319644 162319785 + 4.25881 NA intron (NM_001164757, intron 6 of 9) intron (NM_001164757, intron 6 of 9) 7378 NR_030283 693141 NR_030283 MIR556 MIRN556|hsa-mir-556 microRNA 556 ncRNA 13-PTNLD9-TUMOR_peak_24540 chr19 23941733 23941827 + 4.25629 NA promoter-TSS (NM_138286) promoter-TSS (NM_138286) -87 NM_138286 148213 Hs.399952 NM_138286 HPRD:08102 ZNF681 - zinc finger protein 681 protein-coding 13-PTNLD9-TUMOR_peak_23206 chr18 49143653 49143833 + 4.25629 NA Intergenic L2a|LINE|L2 225331 NR_040074 100287225 Hs.448920 NR_040074 ENSG00000227115 LOC100287225 - uncharacterized LOC100287225 ncRNA 13-PTNLD9-TUMOR_peak_421 chr1 11713420 11713516 + 4.25451 NA promoter-TSS (NM_183412) promoter-TSS (NM_183412) -964 NM_183412 93611 Hs.556006 NM_033182 HPRD:16445 FBXO44 FBG3|FBX30|FBX6A|Fbx44|Fbxo6a F-box protein 44 protein-coding 13-PTNLD9-TUMOR_peak_54686 chr9 124738240 124738409 + 4.25451 NA intron (NM_001139442, intron 4 of 8) MIRb|SINE|MIR 117561 NM_001139442 158135 Hs.438937 NM_194252 HPRD:10047 TTLL11 C9orf20|bA244O19.1 tubulin tyrosine ligase-like family, member 11 protein-coding 13-PTNLD9-TUMOR_peak_1633 chr1 46992454 46992706 + 4.25034 NA Intergenic Intergenic -11788 NR_038403 100507423 Hs.601863 NR_038403 ENSG00000269956 MKNK1-AS1 - MKNK1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_35341 chr3 111579358 111579452 + 4.24203 NA intron (NM_001134439, intron 1 of 17) intron (NM_001134439, intron 1 of 17) 837 NM_001134439 90102 Hs.603252 NM_145753 HPRD:06611 PHLDB2 LL5b|LL5beta pleckstrin homology-like domain, family B, member 2 protein-coding 13-PTNLD9-TUMOR_peak_37104 chr3 187086081 187086231 + 4.24107 NA promoter-TSS (NM_022147) promoter-TSS (NM_022147) -12 NM_022147 64108 Hs.43388 NM_022147 RTP4 IFRG28|Z3CXXC4 receptor (chemosensory) transporter protein 4 protein-coding 13-PTNLD9-TUMOR_peak_41619 chr5 99711402 99711496 + 4.24107 NA Intergenic Intergenic 12509 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase, beta pseudogene pseudo 13-PTNLD9-TUMOR_peak_50113 chr8 12482302 12482400 + 4.24107 NA intron (NR_047662, intron 2 of 8) LTR5A|LTR|ERVK 40769 NR_047662 729732 Hs.322761 NR_047662 LOC729732 - uncharacterized LOC729732 ncRNA 13-PTNLD9-TUMOR_peak_2117 chr1 67519757 67519851 + 4.24107 NA 5' UTR (NM_015139, exon 1 of 12) 5' UTR (NM_015139, exon 1 of 12) 276 NM_015139 23169 Hs.213642 NM_015139 HPRD:15372 SLC35D1 UGTREL7 solute carrier family 35 (UDP-GlcA/UDP-GalNAc transporter), member D1 protein-coding 13-PTNLD9-TUMOR_peak_49985 chr8 6722083 6722192 + 4.24107 NA Intergenic LTR24B|LTR|ERV1 13392 NM_005218 1672 Hs.32949 NM_005218 HPRD:03634 DEFB1 BD1|DEFB-1|DEFB101|HBD1 defensin, beta 1 protein-coding 13-PTNLD9-TUMOR_peak_40755 chr5 43603497 43603730 + 4.24107 NA promoter-TSS (NR_073113) promoter-TSS (NR_073113) -281 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_5183 chr1 205180167 205180396 + 4.23576 NA intron (NM_199462, intron 1 of 11) CpG 446 NM_015375 25778 Hs.6874 NM_015375 HPRD:11495 DSTYK CAKUT1|DustyPK|RIP5|RIPK5 dual serine/threonine and tyrosine protein kinase protein-coding 13-PTNLD9-TUMOR_peak_48288 chr7 91286031 91286253 + 4.23576 NA Intergenic Intergenic 223892 NM_001301135 7978 Hs.532216 NM_006980 HPRD:08373 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 13-PTNLD9-TUMOR_peak_52605 chr9 738495 738688 + 4.23576 NA intron (NM_153186, intron 7 of 10) intron (NM_153186, intron 7 of 10) 31785 NM_153186 23189 Hs.306764 NM_015158 HPRD:09651 KANK1 ANKRD15|CPSQ2|KANK KN motif and ankyrin repeat domains 1 protein-coding 13-PTNLD9-TUMOR_peak_44176 chr6 25359957 25360051 + 4.23576 NA intron (NM_017640, intron 2 of 36) intron (NM_017640, intron 2 of 36) 80348 NM_001173977 55604 Hs.649550 NM_017640 HPRD:11285 LRRC16A CARMIL|CARMIL1|CARMIL1a|LRRC16|dJ501N12.1|dJ501N12.5 leucine rich repeat containing 16A protein-coding 13-PTNLD9-TUMOR_peak_37596 chr4 1794488 1794655 + 4.23576 NA promoter-TSS (NM_001163213) promoter-TSS (NM_001163213) -468 NM_000142 2261 Hs.1420 NM_000142 HPRD:00624 FGFR3 ACH|CD333|CEK2|HSFGFR3EX|JTK4 fibroblast growth factor receptor 3 protein-coding 13-PTNLD9-TUMOR_peak_13514 chr12 95611831 95611925 + 4.23569 NA promoter-TSS (NM_018351) promoter-TSS (NM_018351) 356 NM_017599 55591 Hs.24135 NM_017599 HPRD:11671 VEZT VEZATIN vezatin, adherens junctions transmembrane protein protein-coding 13-PTNLD9-TUMOR_peak_10686 chr11 76294156 76294314 + 4.23569 NA Intergenic SVA_C|Other|Other 86809 NM_005512 2615 Hs.151641 NM_005512 HPRD:00667 LRRC32 D11S833E|GARP leucine rich repeat containing 32 protein-coding 13-PTNLD9-TUMOR_peak_6873 chr10 32259157 32259341 + 4.23569 NA Intergenic SVA_F|Other|Other -41445 NM_001270698 94134 Hs.499264 NM_018287 HPRD:06446 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 13-PTNLD9-TUMOR_peak_27092 chr2 65170985 65171205 + 4.23077 NA Intergenic Intergenic -11514 NR_036586 400958 Hs.591565 NR_036586 LOC400958 - uncharacterized LOC400958 ncRNA 13-PTNLD9-TUMOR_peak_6722 chr10 25241759 25241958 + 4.23077 NA promoter-TSS (NM_020200) promoter-TSS (NM_020200) -285 NM_001282786 56952 Hs.405619 NM_020200 HPRD:17917 PRTFDC1 HHGP phosphoribosyl transferase domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_8083 chr10 98268922 98269087 + 4.23077 NA intron (NM_012465, intron 1 of 20) MLT1G1|LTR|ERVL-MaLR 4679 NM_012465 7093 Hs.154296 NM_012465 HPRD:05993 TLL2 - tolloid-like 2 protein-coding 13-PTNLD9-TUMOR_peak_4211 chr1 163844868 163845026 + 4.23077 NA Intergenic Intergenic -451966 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3, subunit J pseudogene pseudo 13-PTNLD9-TUMOR_peak_38277 chr4 48130062 48130250 + 4.23077 NA intron (NM_003328, intron 1 of 14) intron (NM_003328, intron 1 of 14) 6117 NM_003328 7294 Hs.479669 NM_003328 HPRD:02505 TXK BTKL|PSCTK5|PTK4|RLK|TKL TXK tyrosine kinase protein-coding 13-PTNLD9-TUMOR_peak_27277 chr2 73496555 73496724 + 4.23077 NA exon (NM_001080410, exon 1 of 12) exon (NM_001080410, exon 1 of 12) 119 NM_001080410 150726 Hs.23158 NM_001080410 ENSG00000163013 FBXO41 FBX41 F-box protein 41 protein-coding 13-PTNLD9-TUMOR_peak_44025 chr6 19159429 19159614 + 4.23077 NA intron (NR_110860, intron 3 of 10) intron (NR_110860, intron 3 of 10) 21190 NR_110860 101928519 Hs.551771 NR_110860 LOC101928519 - uncharacterized LOC101928519 ncRNA 13-PTNLD9-TUMOR_peak_36455 chr3 154513475 154513569 + 4.23077 NA Intergenic Intergenic -283914 NM_000902 4311 Hs.307734 NM_000902 HPRD:00392 MME CALLA|CD10|NEP|SFE membrane metallo-endopeptidase protein-coding 13-PTNLD9-TUMOR_peak_25427 chr19 50608412 50608549 + 4.22580 NA Intergenic Intergenic -1148 NR_024225 100169954 Hs.723094 NR_024225 SNAR-A11 - small ILF3/NF90-associated RNA A11 snRNA 13-PTNLD9-TUMOR_peak_37556 chr4 1035341 1035510 + 4.22545 NA Intergenic Intergenic 29173 NM_021923 53834 Hs.193326 NM_021923 HPRD:16163 FGFRL1 FGFR5|FHFR fibroblast growth factor receptor-like 1 protein-coding 13-PTNLD9-TUMOR_peak_16003 chr14 64341706 64341821 + 4.21696 NA intron (NM_182914, intron 1 of 115) FAM|SINE|Alu 22080 NM_182914 23224 Hs.745014 NM_015180 HPRD:09763 SYNE2 EDMD5|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing, nuclear envelope 2 protein-coding 13-PTNLD9-TUMOR_peak_4986 chr1 201854779 201854915 + 4.21610 NA Intergenic Intergenic -2950 NR_030775 149345 Hs.632471 NM_198149 HPRD:12729 SHISA4 C1orf40|TMEM58 shisa family member 4 protein-coding 13-PTNLD9-TUMOR_peak_40496 chr5 25083650 25083744 + 4.21573 NA Intergenic L1PA3|LINE|L1 -243005 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LOC340107 - uncharacterized LOC340107 ncRNA 13-PTNLD9-TUMOR_peak_28260 chr2 121076884 121076978 + 4.21573 NA Intergenic L2b|LINE|L2 -26788 NM_002193 3625 Hs.1735 NM_002193 HPRD:00934 INHBB - inhibin, beta B protein-coding 13-PTNLD9-TUMOR_peak_19253 chr16 47177396 47177725 + 4.21573 NA promoter-TSS (NR_110903) promoter-TSS (NR_110903) 376 NM_018092 81831 Hs.645802 NM_018092 HPRD:09721 NETO2 BTCL2|NEOT2 neuropilin (NRP) and tolloid (TLL)-like 2 protein-coding 13-PTNLD9-TUMOR_peak_19443 chr16 57624678 57624901 + 4.21573 NA Intergenic MIR|SINE|MIR -28816 NM_001290142 9289 Hs.513633 NM_005682 HPRD:06824 GPR56 BFPP|BPPR|TM7LN4|TM7XN1 G protein-coupled receptor 56 protein-coding 13-PTNLD9-TUMOR_peak_47971 chr7 74489268 74489474 + 4.21558 NA exon (NM_030798, exon 1 of 11) exon (NM_030798, exon 1 of 11) 346 NM_001281441 81554 Hs.529623 NM_030798 HPRD:15654 WBSCR16 - Williams-Beuren syndrome chromosome region 16 protein-coding 13-PTNLD9-TUMOR_peak_16626 chr14 103533695 103533895 + 4.21369 NA Intergenic AluJb|SINE|Alu -10053 NM_006035 9578 Hs.654634 NM_006035 HPRD:08516 CDC42BPB MRCKB CDC42 binding protein kinase beta (DMPK-like) protein-coding 13-PTNLD9-TUMOR_peak_12008 chr12 6932410 6932509 + 4.21369 NA intron (NM_019858, intron 1 of 4) L3b|LINE|CR1 1496 NM_014449 27239 Hs.631654 NM_014449 HPRD:13608 GPR162 A-2|GRCA G protein-coupled receptor 162 protein-coding 13-PTNLD9-TUMOR_peak_1724 chr1 49056926 49057091 + 4.21369 NA intron (NM_032785, intron 9 of 13) intron (NM_032785, intron 9 of 13) -119128 NM_019073 54558 Hs.538103 NM_019073 HPRD:15430 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 13-PTNLD9-TUMOR_peak_4166 chr1 161735124 161735241 + 4.21369 NA promoter-TSS (NM_007348) promoter-TSS (NM_007348) -852 NM_007348 22926 Hs.492740 NM_007348 HPRD:16118 ATF6 ATF6A activating transcription factor 6 protein-coding 13-PTNLD9-TUMOR_peak_31763 chr20 60940925 60941111 + 4.21369 NA intron (NM_005560, intron 1 of 79) intron (NM_005560, intron 1 of 79) 1350 NM_005560 3911 Hs.473256 NM_005560 HPRD:03020 LAMA5 - laminin, alpha 5 protein-coding 13-PTNLD9-TUMOR_peak_31700 chr20 56882007 56882126 + 4.21369 NA intron (NR_003505, intron 2 of 16) MLT1H2|LTR|ERVL-MaLR 2429 NR_003505 55370 Hs.473179 NM_018498 HPRD:17895 PPP4R1L C20orf192|PRO1085 protein phosphatase 4, regulatory subunit 1-like pseudo 13-PTNLD9-TUMOR_peak_14577 chr13 34253626 34253724 + 4.20128 NA Intergenic Intergenic -2703 NM_001243476 90627 Hs.156551 NM_052851 HPRD:11607 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR-related lipid transfer (START) domain containing 13 protein-coding 13-PTNLD9-TUMOR_peak_51450 chr8 102458611 102458705 + 4.20128 NA Intergenic Intergenic -46010 NM_024915 79977 Hs.661088 NM_024915 HPRD:10545 GRHL2 BOM|DFNA28|TFCP2L3 grainyhead-like 2 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_9561 chr11 36469675 36469769 + 4.20128 NA intron (NM_001160169, intron 6 of 6) intron (NM_001160169, intron 6 of 6) 47175 NM_001160169 79899 Hs.19987 NM_024841 HPRD:07854 PRR5L PROTOR2 proline rich 5 like protein-coding 13-PTNLD9-TUMOR_peak_16410 chr14 89737275 89737474 + 4.20128 NA intron (NM_001085471, intron 4 of 6) (CA)n|Simple_repeat|Simple_repeat 146080 NM_005197 1112 Hs.434286 NM_005197 HPRD:07533 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 13-PTNLD9-TUMOR_peak_30881 chr20 34189530 34189647 + 4.20128 NA non-coding (NR_119376, exon 14 of 44) non-coding (NR_119376, exon 14 of 44) 5896 NR_119376 80307 Hs.72222 NR_001442 ENSG00000088340 FER1L4 C20orf124 fer-1-like family member 4, pseudogene (functional) pseudo 13-PTNLD9-TUMOR_peak_25169 chr19 46389371 46389540 + 4.20128 NA promoter-TSS (NM_015649) promoter-TSS (NM_015649) -79 NM_015649 26145 Hs.515477 NM_015649 HPRD:17159 IRF2BP1 - interferon regulatory factor 2 binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_34468 chr3 47563814 47563908 + 4.20128 NA Intergenic Intergenic -8662 NM_001031703 54859 Hs.311100 NM_017713 HPRD:07884 ELP6 C3orf75|TMEM103 elongator acetyltransferase complex subunit 6 protein-coding 13-PTNLD9-TUMOR_peak_11989 chr12 6661420 6661523 + 4.19973 NA intron (NR_036467, intron 1 of 9) intron (NR_036467, intron 1 of 9) 3778 NM_080730 25900 Hs.15243 NM_015438 HPRD:09988 IFFO1 HOM-TES-103|IFFO intermediate filament family orphan 1 protein-coding 13-PTNLD9-TUMOR_peak_27424 chr2 85648573 85648723 + 4.19916 NA Intergenic L2b|LINE|L2 -7451 NM_001256139 822 Hs.516155 NM_001747 HPRD:01088 CAPG AFCP|HEL-S-66|MCP capping protein (actin filament), gelsolin-like protein-coding 13-PTNLD9-TUMOR_peak_4456 chr1 174128890 174129061 + 4.19568 NA promoter-TSS (NR_121197) promoter-TSS (NR_121197) 423 NM_014857 9910 Hs.585378 NM_014857 HPRD:16464 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1-like protein-coding 13-PTNLD9-TUMOR_peak_4121 chr1 161015101 161015327 + 4.19537 NA promoter-TSS (NM_001276373) promoter-TSS (NM_001276373) -487 NM_001276373 7391 Hs.414880 NM_007122 HPRD:01880 USF1 FCHL|FCHL1|HYPLIP1|MLTF|MLTFI|UEF|bHLHb11 upstream transcription factor 1 protein-coding 13-PTNLD9-TUMOR_peak_19046 chr16 31009536 31009731 + 4.19537 NA intron (NM_052874, intron 4 of 9) intron (NM_052874, intron 4 of 9) 12196 NM_052874 112755 Hs.542230 NM_052874 HPRD:18126 STX1B STX1B1|STX1B2 syntaxin 1B protein-coding 13-PTNLD9-TUMOR_peak_37794 chr4 6769310 6769404 + 4.19537 NA Intergenic MLT2C1|LTR|ERVL -15102 NM_001100590 9778 Hs.79276 NM_014743 HPRD:11070 KIAA0232 - KIAA0232 protein-coding 13-PTNLD9-TUMOR_peak_21840 chr17 65373341 65373456 + 4.19104 NA promoter-TSS (NM_012417) promoter-TSS (NM_012417) 1 NM_012417 26207 Hs.591185 NM_012417 HPRD:05504 PITPNC1 M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1 phosphatidylinositol transfer protein, cytoplasmic 1 protein-coding 13-PTNLD9-TUMOR_peak_287 chr1 8484494 8484839 + 4.19104 NA promoter-TSS (NM_001042682) promoter-TSS (NM_001042682) -919 NM_001042682 473 Hs.463041 NM_012102 HPRD:05566 RERE ARG|ARP|ATN1L|DNB1 arginine-glutamic acid dipeptide (RE) repeats protein-coding 13-PTNLD9-TUMOR_peak_30028 chr2 233415882 233415976 + 4.19084 NA promoter-TSS (NR_049797) promoter-TSS (NR_049797) 632 NM_004846 9470 Hs.292026 NM_004846 HPRD:05798 EIF4E2 4E-LP|4EHP|EIF4EL3|IF4e eukaryotic translation initiation factor 4E family member 2 protein-coding 13-PTNLD9-TUMOR_peak_21447 chr17 48241571 48241665 + 4.19084 NA Intergenic Intergenic -1748 NM_000023 6442 Hs.463412 NM_000023 HPRD:02525 SGCA 50-DAG|A2|ADL|DAG2|DMDA2|LGMD2D|SCARMD1|adhalin sarcoglycan, alpha (50kDa dystrophin-associated glycoprotein) protein-coding 13-PTNLD9-TUMOR_peak_48418 chr7 97983973 97984094 + 4.19084 NA intron (NM_018842, intron 3 of 13) intron (NM_018842, intron 3 of 13) 46394 NM_018842 55971 Hs.656063 NM_018842 HPRD:11270 BAIAP2L1 IRTKS BAI1-associated protein 2-like 1 protein-coding 13-PTNLD9-TUMOR_peak_53792 chr9 85677643 85677860 + 4.19084 NA exon (NM_152573, exon 1 of 17) exon (NM_152573, exon 1 of 17) 292 NM_152573 158158 Hs.129136 NM_152573 HPRD:08337 RASEF RAB45 RAS and EF-hand domain containing protein-coding 13-PTNLD9-TUMOR_peak_48784 chr7 107265735 107266000 + 4.19084 NA Intergenic Intergenic -35213 NM_000441 5172 Hs.571246 NM_000441 HPRD:05735 SLC26A4 DFNB4|EVA|PDS|TDH2B solute carrier family 26 (anion exchanger), member 4 protein-coding 13-PTNLD9-TUMOR_peak_39058 chr4 110128394 110128488 + 4.19084 NA intron (NM_198721, intron 3 of 36) intron (NM_198721, intron 3 of 36) 95082 NM_001256074 84570 Hs.658842 NM_032518 HPRD:09886 COL25A1 AMY|CLAC|CLAC-P|CLACP collagen, type XXV, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_24913 chr19 39175141 39175271 + 4.18290 NA intron (NM_004924, intron 1 of 20) intron (NM_004924, intron 1 of 20) 36939 NM_004924 81 Hs.270291 NM_004924 ACTN4 ACTININ-4|FSGS|FSGS1 actinin, alpha 4 protein-coding 13-PTNLD9-TUMOR_peak_26024 chr2 8816802 8816907 + 4.18073 NA intron (NR_110154, intron 1 of 3) CpG 5137 NR_110153 100506299 Hs.439031 NR_110153 ID2-AS1 - ID2 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_10605 chr11 73664637 73664731 + 4.17502 NA intron (NM_153614, intron 1 of 7) LTR2B|LTR|ERV1 3320 NM_153614 374407 Hs.567888 NM_153614 HPRD:15573 DNAJB13 RSPH16A|TSARG5|TSARG6 DnaJ (Hsp40) homolog, subfamily B, member 13 protein-coding 13-PTNLD9-TUMOR_peak_11510 chr11 124616880 124617106 + 4.17502 NA TTS (NM_014312) TTS (NM_014312) 5116 NM_014312 23584 Hs.112377 NM_014312 HPRD:08390 VSIG2 2210413P10Rik|CTH|CTXL V-set and immunoglobulin domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_18875 chr16 28382966 28383060 + 4.17502 NA Intergenic AluY|SINE|Alu -8832 NM_001282524 728741 Hs.726467 NM_001282524 ENSG00000198156 NPIPB6 NPIPB nuclear pore complex interacting protein family, member B6 protein-coding 13-PTNLD9-TUMOR_peak_5444 chr1 221199434 221199598 + 4.17247 NA Intergenic Intergenic -146034 NR_046901 100873924 Hs.645593 NR_046901 HLX-AS1 - HLX antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_29878 chr2 220417510 220417604 + 4.17247 NA intron (NM_015311, intron 17 of 20) CpG-16002 -3688 NR_036082 100423039 NR_036082 miRBase:MI0014152 MIR3132 - microRNA 3132 ncRNA 13-PTNLD9-TUMOR_peak_14615 chr13 39611952 39612193 + 4.17247 NA promoter-TSS (NM_001017370) promoter-TSS (NM_001017370) 141 NM_025138 80209 Hs.318526 NM_025138 HPRD:12616 PROSER1 C13orf23 proline and serine rich 1 protein-coding 13-PTNLD9-TUMOR_peak_5881 chr1 234081444 234081564 + 4.17247 NA intron (NM_173508, intron 2 of 7) THE1B|LTR|ERVL-MaLR 41046 NM_173508 148641 Hs.158748 NM_173508 HPRD:15378 SLC35F3 - solute carrier family 35, member F3 protein-coding 13-PTNLD9-TUMOR_peak_52061 chr8 130996651 130996745 + 4.17247 NA intron (NR_046361, intron 1 of 13) MIR3|SINE|MIR 24001 NR_049826 100847051 NR_049826 miRBase:MI0018173 MIR5194 - microRNA 5194 ncRNA 13-PTNLD9-TUMOR_peak_49738 chr7 153099037 153099152 + 4.17247 NA intron (NR_125776, intron 3 of 3) intron (NR_125776, intron 3 of 3) 10225 NR_125776 103724390 Hs.614280 NR_125776 LINC01287 TCONS_l2_00027522 long intergenic non-protein coding RNA 1287 ncRNA 13-PTNLD9-TUMOR_peak_41348 chr5 76326576 76326715 + 4.17247 NA exon (NM_018046, exon 1 of 14) exon (NM_018046, exon 1 of 14) 435 NM_018046 55109 Hs.634849 NM_018046 HPRD:07621 AGGF1 GPATC7|GPATCH7|HSU84971|HUS84971|VG5Q angiogenic factor with G patch and FHA domains 1 protein-coding 13-PTNLD9-TUMOR_peak_5160 chr1 204529867 204530038 + 4.17247 NA Intergenic L2a|LINE|L2 44445 NM_001278517 4194 Hs.497492 NM_002393 HPRD:04082 MDM4 HDMX|MDMX|MRP1 MDM4, p53 regulator protein-coding 13-PTNLD9-TUMOR_peak_18881 chr16 28516505 28516712 + 4.17247 NA intron (NM_145659, intron 1 of 4) intron (NM_145659, intron 1 of 4) 1547 NM_145659 246778 Hs.528111 NM_145659 HPRD:16307 IL27 IL-27|IL-27A|IL27A|IL27p28|IL30|p28 interleukin 27 protein-coding 13-PTNLD9-TUMOR_peak_48203 chr7 85379818 85379950 + 4.16895 NA Intergenic L1PA7|LINE|L1 -628637 NM_152754 223117 Hs.201340 NM_152754 HPRD:15321 SEMA3D Sema-Z2|coll-2 sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D protein-coding 13-PTNLD9-TUMOR_peak_40005 chr4 185747537 185747720 + 4.16895 NA promoter-TSS (NM_001995) promoter-TSS (NM_001995) -360 NM_001286711 2180 Hs.406678 NM_001995 HPRD:01068 ACSL1 ACS1|FACL1|FACL2|LACS|LACS1|LACS2 acyl-CoA synthetase long-chain family member 1 protein-coding 13-PTNLD9-TUMOR_peak_23302 chr18 56338282 56338447 + 4.16895 NA promoter-TSS (NM_173844) promoter-TSS (NM_173844) -254 NM_006785 10892 Hs.601217 NM_006785 HPRD:06892 MALT1 IMD12|MLT|MLT1 mucosa associated lymphoid tissue lymphoma translocation gene 1 protein-coding 13-PTNLD9-TUMOR_peak_8275 chr10 105877619 105877794 + 4.16895 NA Intergenic Intergenic -4110 NM_145247 119392 Hs.93667 NM_145247 HPRD:12590 SFR1 C10orf78|MEI5|MEIR5|bA373N18.1 SWI5-dependent recombination repair 1 protein-coding 13-PTNLD9-TUMOR_peak_24088 chr19 12984001 12984142 + 4.16895 NA intron (NM_014975, intron 24 of 25) intron (NM_014975, intron 24 of 25) 8264 NM_001375 1777 Hs.118243 NM_001375 HPRD:00531 DNASE2 DNASE2A|DNL|DNL2 deoxyribonuclease II, lysosomal protein-coding 13-PTNLD9-TUMOR_peak_7588 chr10 70982472 70982617 + 4.16895 NA intron (NM_025130, intron 1 of 17) intron (NM_025130, intron 1 of 17) 2485 NM_025130 80201 Hs.522988 NM_025130 HPRD:08006 HKDC1 - hexokinase domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_1285 chr1 40422003 40422103 + 4.16636 NA intron (NM_001287808, intron 1 of 11) intron (NM_001287808, intron 1 of 11) 1269 NM_032793 84879 Hs.655177 NM_032793 HPRD:07861 MFSD2A MFSD2|NLS1 major facilitator superfamily domain containing 2A protein-coding 13-PTNLD9-TUMOR_peak_4470 chr1 175098486 175098588 + 4.16581 NA intron (NM_022093, intron 15 of 18) MER41C|LTR|ERV1 61543 NM_022093 63923 Hs.156369 NM_022093 ENSG00000120332 TNN TN-W tenascin N protein-coding 13-PTNLD9-TUMOR_peak_4943 chr1 201278660 201278880 + 4.15796 NA intron (NM_001005337, intron 2 of 13) intron (NM_001005337, intron 2 of 13) 26190 NM_000299 5317 Hs.497350 NM_000299 HPRD:03579 PKP1 B6P plakophilin 1 protein-coding 13-PTNLD9-TUMOR_peak_47979 chr7 74572082 74572353 + 4.15718 NA TTS (NR_003187) TTS (NR_003187) 15585 NR_003187 654817 Hs.647047 NR_003187 HPRD:01990 NCF1C SH3PXD1C neutrophil cytosolic factor 1C pseudogene pseudo 13-PTNLD9-TUMOR_peak_25273 chr19 48450093 48450207 + 4.15706 NA Intergenic AluYa5|SINE|Alu 1971 NR_004437 100126800 Hs.707967 NR_004437 SNAR-A12 SNAR-A53102747 small ILF3/NF90-associated RNA A12 snRNA 13-PTNLD9-TUMOR_peak_48168 chr7 82073618 82073873 + 4.15541 NA promoter-TSS (NM_000722) promoter-TSS (NM_000722) -714 NM_000722 781 Hs.282151 NM_000722 HPRD:00245 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium channel, voltage-dependent, alpha 2/delta subunit 1 protein-coding 13-PTNLD9-TUMOR_peak_43747 chr6 10694521 10694649 + 4.15541 NA promoter-TSS (NM_017906) promoter-TSS (NM_017906) 254 NR_026737 347744 Hs.61389 NM_001145020 ENSG00000137434 C6orf52 - chromosome 6 open reading frame 52 protein-coding 13-PTNLD9-TUMOR_peak_48185 chr7 83652256 83652425 + 4.15541 NA intron (NM_006080, intron 6 of 16) intron (NM_006080, intron 6 of 16) 171877 NM_006080 10371 Hs.252451 NM_006080 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A protein-coding 13-PTNLD9-TUMOR_peak_53906 chr9 91004072 91004166 + 4.15541 NA intron (NM_006717, intron 1 of 5) CpG 822 NM_006717 10927 Hs.146804 NM_006717 HPRD:18096 SPIN1 SPIN spindlin 1 protein-coding 13-PTNLD9-TUMOR_peak_25429 chr19 50619086 50619251 + 4.15444 NA Intergenic AluYa5|SINE|Alu 1929 NR_024223 100169952 Hs.723094 NR_024223 SNAR-A5 - small ILF3/NF90-associated RNA A5 snRNA 13-PTNLD9-TUMOR_peak_25428 chr19 50613725 50613893 + 4.15172 NA Intergenic AluYa5|SINE|Alu 1936 NR_024226 100169955 Hs.723094 NR_024226 SNAR-A9 - small ILF3/NF90-associated RNA A9 snRNA 13-PTNLD9-TUMOR_peak_26949 chr2 54784985 54785183 + 4.14643 NA promoter-TSS (NM_178313) promoter-TSS (NM_178313) -447 NM_178313 6711 Hs.503178 NM_003128 HPRD:01683 SPTBN1 ELF|HEL102|SPTB2|betaSpII spectrin, beta, non-erythrocytic 1 protein-coding 13-PTNLD9-TUMOR_peak_49186 chr7 134200632 134200811 + 4.14643 NA Intergenic Intergenic -11623 NM_020299 57016 Hs.116724 NM_020299 HPRD:05271 AKR1B10 AKR1B11|AKR1B12|ALDRLn|ARL-1|ARL1|HIS|HSI aldo-keto reductase family 1, member B10 (aldose reductase) protein-coding 13-PTNLD9-TUMOR_peak_52364 chr8 142439853 142440009 + 4.14643 NA intron (NM_032611, intron 4 of 4) CpG 8443 NM_032611 11156 Hs.43666 NM_007079 PTP4A3 PRL-3|PRL-R|PRL3 protein tyrosine phosphatase type IVA, member 3 protein-coding 13-PTNLD9-TUMOR_peak_22257 chr17 79228890 79229054 + 4.14643 NA intron (NM_138570, intron 11 of 13) intron (NM_138570, intron 11 of 13) 15861 NM_001086521 284184 Hs.356545 NM_001086521 ENSG00000224877 C17orf89 - chromosome 17 open reading frame 89 protein-coding 13-PTNLD9-TUMOR_peak_26196 chr2 16059108 16059370 + 4.14643 NA Intergenic Intergenic -1282 NR_125783 103752554 Hs.269571 NR_125783 MYCNUT MYCNUN|lncUSMycN MYCN upstream transcript (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_19840 chr16 79472438 79472551 + 4.14434 NA Intergenic MIRb|SINE|MIR 162128 NM_005360 4094 Hs.134859 NM_005360 HPRD:01518 MAF CCA4|c-MAF v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog protein-coding 13-PTNLD9-TUMOR_peak_12875 chr12 53374729 53374903 + 4.14402 NA Intergenic Intergenic -25226 NM_001417 1975 Hs.648394 NM_001417 HPRD:04892 EIF4B EIF-4B|PRO1843 eukaryotic translation initiation factor 4B protein-coding 13-PTNLD9-TUMOR_peak_30648 chr20 25013562 25013669 + 4.14402 NA promoter-TSS (NM_001252676) promoter-TSS (NM_001252676) -273 NM_001252676 84532 Hs.529353 NM_032501 HPRD:12413 ACSS1 ACAS2L|ACECS1|AceCS2L acyl-CoA synthetase short-chain family member 1 protein-coding 13-PTNLD9-TUMOR_peak_18617 chr16 15712401 15712549 + 4.14402 NA intron (NM_014647, intron 13 of 26) intron (NM_014647, intron 13 of 26) -7523 NR_106761 102465252 NR_106761 MIR6506 hsa-mir-6506 microRNA 6506 ncRNA 13-PTNLD9-TUMOR_peak_42439 chr5 142434202 142434307 + 4.14402 NA intron (NM_015071, intron 15 of 22) intron (NM_015071, intron 15 of 22) -185779 NR_046680 100874239 Hs.570896 NR_046680 ENSG00000226272 ARHGAP26-AS1 - ARHGAP26 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_40145 chr5 474613 474896 + 4.14380 NA intron (NR_125375, intron 1 of 6) CpG 1403 NR_125375 100288152 Hs.535801 NR_125375 LOC100288152 - uncharacterized LOC100288152 ncRNA 13-PTNLD9-TUMOR_peak_1709 chr1 48535803 48536002 + 4.14092 NA Intergenic Intergenic -73340 NM_001194986 388630 Hs.61504 NM_001194986 ENSG00000269113 TRABD2B TIKI2 TraB domain containing 2B protein-coding 13-PTNLD9-TUMOR_peak_36920 chr3 182896956 182897070 + 4.14092 NA 3' UTR (NM_015078, exon 30 of 30) 3' UTR (NM_015078, exon 30 of 30) -16346 NM_014398 27074 Hs.518448 NM_014398 HPRD:12062 LAMP3 CD208|DC LAMP|DC-LAMP|DCLAMP|LAMP|LAMP-3|TSC403 lysosomal-associated membrane protein 3 protein-coding 13-PTNLD9-TUMOR_peak_17781 chr15 81293904 81293998 + 4.14092 NA 5' UTR (NM_022566, exon 1 of 1) 5' UTR (NM_022566, exon 1 of 1) 656 NM_022566 59274 Hs.513071 NM_022566 HPRD:11300 MESDC1 - mesoderm development candidate 1 protein-coding 13-PTNLD9-TUMOR_peak_17902 chr15 86125323 86125493 + 4.14092 NA intron (NM_007200, intron 7 of 36) intron (NM_007200, intron 7 of 36) -37773 NM_001270546 11214 Hs.459211 NM_006738 HPRD:05253 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A kinase (PRKA) anchor protein 13 protein-coding 13-PTNLD9-TUMOR_peak_38468 chr4 57848140 57848256 + 4.13576 NA intron (NM_000938, intron 1 of 24) L2|LINE|L2 3089 NM_000938 5431 Hs.602757 NM_000938 HPRD:15943 POLR2B POL2RB|RPB2|hRPB140|hsRPB2 polymerase (RNA) II (DNA directed) polypeptide B, 140kDa protein-coding 13-PTNLD9-TUMOR_peak_12279 chr12 20124450 20124657 + 4.13576 NA Intergenic LTR35A|LTR|ERV1 -43066 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LOC100506393 - uncharacterized LOC100506393 ncRNA 13-PTNLD9-TUMOR_peak_34755 chr3 57944477 57944684 + 4.13576 NA Intergenic Intergenic -49547 NM_001457 2317 Hs.476448 NM_001457 HPRD:04543 FLNB ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP filamin B, beta protein-coding 13-PTNLD9-TUMOR_peak_20097 chr16 88850692 88850878 + 4.13331 NA intron (NM_001142864, intron 1 of 50) CpG 587 NM_001142864 9780 Hs.377001 NM_001142864 HPRD:10945 PIEZO1 DHS|FAM38A|Mib piezo-type mechanosensitive ion channel component 1 protein-coding 13-PTNLD9-TUMOR_peak_16864 chr15 28567636 28567786 + 4.12918 NA promoter-TSS (NM_004667) promoter-TSS (NM_004667) -413 NM_004667 8924 Hs.434890 NM_004667 HPRD:06905 HERC2 D15F37S1|MRT38|SHEP1|jdf2|p528 HECT and RLD domain containing E3 ubiquitin protein ligase 2 protein-coding 13-PTNLD9-TUMOR_peak_28548 chr2 134878463 134878660 + 4.12642 NA Intergenic CpG -6135 NR_037450 100500878 NR_037450 miRBase:MI0016080 MIR3679 - microRNA 3679 ncRNA 13-PTNLD9-TUMOR_peak_37329 chr3 194298933 194299048 + 4.12642 NA Intergenic Intergenic -6007 NR_047574 100507297 Hs.586059 NR_047573 TMEM44-AS1 - TMEM44 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_461 chr1 12679105 12679297 + 4.12458 NA Intergenic Intergenic -1464 NM_004753 9249 Hs.289347 NM_004753 HPRD:09915 DHRS3 DD83.1|RDH17|Rsdr1|SDR1|SDR16C1|retSDR1 dehydrogenase/reductase (SDR family) member 3 protein-coding 13-PTNLD9-TUMOR_peak_35968 chr3 133193109 133193302 + 4.12458 NA intron (NM_003571, intron 6 of 6) MIR3|SINE|MIR 74366 NM_003571 8419 Hs.659862 NM_003571 HPRD:04444 BFSP2 CP47|CP49|CTRCT12|LIFL-L|PHAKOSIN beaded filament structural protein 2, phakinin protein-coding 13-PTNLD9-TUMOR_peak_9351 chr11 26986858 26986952 + 4.12458 NA Intergenic L1PA2|LINE|L1 -28723 NM_203371 387758 Hs.712718 NM_203371 HPRD:17366 FIBIN - fin bud initiation factor homolog (zebrafish) protein-coding 13-PTNLD9-TUMOR_peak_31273 chr20 45975642 45975736 + 4.12458 NA intron (NM_001281772, intron 4 of 23) intron (NM_001281772, intron 4 of 23) 9944 NM_001281781 23613 Hs.446240 NM_012408 HPRD:10166 ZMYND8 PRKCBP1|PRO2893|RACK7 zinc finger, MYND-type containing 8 protein-coding 13-PTNLD9-TUMOR_peak_47141 chr7 28996439 28996602 + 4.12458 NA exon (NM_014817, exon 2 of 2) exon (NM_014817, exon 2 of 2) 1509 NM_014817 9865 Hs.744120 NM_014817 TRIL - TLR4 interactor with leucine-rich repeats protein-coding 13-PTNLD9-TUMOR_peak_43598 chr6 4775681 4775803 + 4.12458 NA promoter-TSS (NM_004824) promoter-TSS (NM_004824) -938 NM_004824 9425 Hs.269092 NM_004824 HPRD:04803 CDYL CDYL1 chromodomain protein, Y-like protein-coding 13-PTNLD9-TUMOR_peak_49821 chr7 156701716 156701884 + 4.12458 NA Intergenic Intergenic -15898 NM_022458 64327 Hs.209989 NM_022458 HPRD:05700 LMBR1 ACHP|C7orf2|DIF14|PPD2|TPT|ZRS limb development membrane protein 1 protein-coding 13-PTNLD9-TUMOR_peak_33720 chr3 10067974 10068208 + 4.12458 NA promoter-TSS (NR_002786) promoter-TSS (NR_002786) -22 NM_033084 2177 Hs.208388 NM_033084 HPRD:01968 FANCD2 FA-D2|FA4|FACD|FAD|FAD2|FANCD Fanconi anemia, complementation group D2 protein-coding 13-PTNLD9-TUMOR_peak_4910 chr1 200708234 200708328 + 4.12458 NA promoter-TSS (NM_203459) promoter-TSS (NM_203459) -405 NM_001297708 23271 Hs.23585 NM_203459 HPRD:11124 CAMSAP2 CAMSAP1L1 calmodulin regulated spectrin-associated protein family, member 2 protein-coding 13-PTNLD9-TUMOR_peak_56413 chrX 118708337 118708457 + 4.11545 NA promoter-TSS (NM_181762) promoter-TSS (NM_181762) -33 NM_001282161 7319 Hs.379466 NM_003336 HPRD:02422 UBE2A HHR6A|MRXS30|MRXSN|RAD6A|UBC2 ubiquitin-conjugating enzyme E2A protein-coding 13-PTNLD9-TUMOR_peak_29834 chr2 219264324 219264555 + 4.11545 NA promoter-TSS (NM_182642) promoter-TSS (NM_182642) -39 NM_021198 58190 Hs.444468 NM_021198 HPRD:05615 CTDSP1 NIF3|NLI-IF|NLIIF|SCP1 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1 protein-coding 13-PTNLD9-TUMOR_peak_2251 chr1 78669245 78669392 + 4.11545 NA Intergenic L1PA7|LINE|L1 -25965 NR_027310 149047 Hs.352665 NM_144700 ENSG00000237413 MGC27382 - uncharacterized MGC27382 ncRNA 13-PTNLD9-TUMOR_peak_38231 chr4 41127255 41127404 + 4.11545 NA intron (NM_004307, intron 2 of 17) intron (NM_004307, intron 2 of 17) 89306 NM_001166050 323 Hs.479602 NM_004307 HPRD:04088 APBB2 FE65L|FE65L1 amyloid beta (A4) precursor protein-binding, family B, member 2 protein-coding 13-PTNLD9-TUMOR_peak_33068 chr22 29977213 29977315 + 4.11545 NA promoter-TSS (NM_001202502) promoter-TSS (NM_001202502) 62 NM_003634 8508 Hs.173878 NM_003634 HPRD:10342 NIPSNAP1 - nipsnap homolog 1 (C. elegans) protein-coding 13-PTNLD9-TUMOR_peak_19082 chr16 31519646 31519826 + 4.11545 NA promoter-TSS (NM_022744) promoter-TSS (NM_022744) 4 NM_022744 64755 Hs.9003 NM_022744 HPRD:07839 C16orf58 RUS chromosome 16 open reading frame 58 protein-coding 13-PTNLD9-TUMOR_peak_32960 chr22 24861684 24861778 + 4.11545 NA intron (NR_028483, intron 3 of 7) MLT1F2|LTR|ERVL-MaLR 29052 NR_028484 646023 Hs.632761 NM_001039784 ENSG00000178803 ADORA2A-AS1 C22orf45 ADORA2A antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_19941 chr16 84636844 84636997 + 4.11545 NA intron (NM_021149, intron 2 of 3) intron (NM_021149, intron 2 of 3) 14782 NM_021149 23406 Hs.289092 NM_021149 HPRD:09482 COTL1 CLP coactosin-like F-actin binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_772 chr1 26827134 26827238 + 4.11545 NA Intergenic CpG 28284 NM_005517 3151 Hs.181163 NM_005517 HMGN2 HMG17 high mobility group nucleosomal binding domain 2 protein-coding 13-PTNLD9-TUMOR_peak_25669 chr19 55677414 55677577 + 4.11545 NA intron (NM_001256714, intron 2 of 11) intron (NM_001256714, intron 2 of 11) 595 NM_178837 352909 Hs.351582 NM_178837 HPRD:14185 DNAAF3 C19orf51|CILD2|DAB1|PCD|PF22 dynein, axonemal, assembly factor 3 protein-coding 13-PTNLD9-TUMOR_peak_29832 chr2 219260719 219260839 + 4.11545 NA 3' UTR (NM_000578, exon 15 of 15) 3' UTR (NM_000578, exon 15 of 15) -2282 NM_001206878 58190 Hs.444468 NM_021198 HPRD:05615 CTDSP1 NIF3|NLI-IF|NLIIF|SCP1 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1 protein-coding 13-PTNLD9-TUMOR_peak_43795 chr6 11771084 11771351 + 4.11545 NA intron (NM_001143948, intron 1 of 6) intron (NM_001143948, intron 1 of 6) 8063 NM_001143948 84830 Hs.126409 NM_032744 HPRD:12836 ADTRP AIG1L|C6orf105|dJ413H6.1 androgen-dependent TFPI-regulating protein protein-coding 13-PTNLD9-TUMOR_peak_15836 chr14 55594439 55594538 + 4.11545 NA Intergenic Intergenic -1447 NM_001177388 3958 Hs.531081 NM_002306 HPRD:01090 LGALS3 CBP35|GAL3|GALBP|GALIG|L31|LGALS2|MAC2 lectin, galactoside-binding, soluble, 3 protein-coding 13-PTNLD9-TUMOR_peak_45286 chr6 52441397 52441829 + 4.11545 NA promoter-TSS (NR_103447) promoter-TSS (NR_103447) 249 NM_012288 9697 Hs.520182 NM_012288 HPRD:16338 TRAM2 - translocation associated membrane protein 2 protein-coding 13-PTNLD9-TUMOR_peak_10295 chr11 66176010 66176168 + 4.11545 NA Intergenic CpG -12386 NM_178864 266743 Hs.256036 NM_178864 HPRD:12260 NPAS4 Le-PAS|NXF|PASD10|bHLHe79 neuronal PAS domain protein 4 protein-coding 13-PTNLD9-TUMOR_peak_22442 chr18 2302991 2303140 + 4.11545 NA Intergenic LTR10A|LTR|ERV1 268424 NM_022840 64863 Hs.126888 NM_022840 HPRD:14390 METTL4 HsT661 methyltransferase like 4 protein-coding 13-PTNLD9-TUMOR_peak_53567 chr9 72184826 72185022 + 4.11545 NA intron (NM_001163, intron 1 of 12) intron (NM_001163, intron 1 of 12) 102351 NM_001163 320 Hs.171939 NM_001163 HPRD:03879 APBA1 D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA amyloid beta (A4) precursor protein-binding, family A, member 1 protein-coding 13-PTNLD9-TUMOR_peak_50598 chr8 37000494 37000693 + 4.11545 NA Intergenic Intergenic 350838 NR_121620 100507420 Hs.105962 NR_121620 LOC100507420 - uncharacterized LOC100507420 ncRNA 13-PTNLD9-TUMOR_peak_9981 chr11 60961645 60961757 + 4.11545 NA Intergenic L2c|LINE|L2 -9266 NM_001079807 643834 Hs.601055 NM_001079807 PGA3 - pepsinogen 3, group I (pepsinogen A) protein-coding 13-PTNLD9-TUMOR_peak_11916 chr12 5500836 5500956 + 4.11545 NA Intergenic MLT1C|LTR|ERVL-MaLR -40384 NM_001102654 4908 Hs.99171 NM_002527 HPRD:01219 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 13-PTNLD9-TUMOR_peak_43858 chr6 13487143 13487393 + 4.11545 NA promoter-TSS (NM_001242628) promoter-TSS (NM_001242628) 601 NM_018988 54438 Hs.484686 NM_018988 HPRD:13574 GFOD1 ADG-90|C6orf114 glucose-fructose oxidoreductase domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_54173 chr9 100797066 100797224 + 4.11545 NA Intergenic Intergenic -21814 NM_018946 54187 Hs.522310 NM_018946 HPRD:07285 NANS HEL-S-100|SAS N-acetylneuraminic acid synthase protein-coding 13-PTNLD9-TUMOR_peak_25647 chr19 54959732 54959832 + 4.10884 NA promoter-TSS (NM_052925) promoter-TSS (NM_052925) -558 NM_052925 114823 Hs.502378 NM_052925 HPRD:11226 LENG8 pp13842 leukocyte receptor cluster (LRC) member 8 protein-coding 13-PTNLD9-TUMOR_peak_19963 chr16 85045353 85045503 + 4.10280 NA promoter-TSS (NM_017740) promoter-TSS (NM_017740) -287 NM_001145548 55625 Hs.461610 NM_017740 HPRD:15722 ZDHHC7 DHHC7|SERZ-B|SERZ1|ZNF370 zinc finger, DHHC-type containing 7 protein-coding 13-PTNLD9-TUMOR_peak_56509 chrX 132149150 132149244 + 4.10280 NA Intergenic L1PA4|LINE|L1 13103 NM_031907 83844 Hs.333137 NM_031907 HPRD:02255 USP26 - ubiquitin specific peptidase 26 protein-coding 13-PTNLD9-TUMOR_peak_54648 chr9 123698802 123699002 + 4.10280 NA Intergenic Intergenic -7451 NM_001190945 7185 Hs.531251 NM_005658 HPRD:03418 TRAF1 EBI6|MGC:10353 TNF receptor-associated factor 1 protein-coding 13-PTNLD9-TUMOR_peak_49105 chr7 130794791 130794885 + 4.10092 NA promoter-TSS (NM_001145354) promoter-TSS (NM_001145354) -17 NM_001145354 4289 Hs.44693 NM_013255 HPRD:16129 MKLN1 TWA2 muskelin 1, intracellular mediator containing kelch motifs protein-coding 13-PTNLD9-TUMOR_peak_32927 chr22 24110556 24110704 + 4.09600 NA promoter-TSS (NR_125756) promoter-TSS (NR_125756) -471 NR_125755 400916 Hs.66915 NM_213720 HPRD:12797 CHCHD10 C22orf16|FTDALS2|N27C7-4 coiled-coil-helix-coiled-coil-helix domain containing 10 protein-coding 13-PTNLD9-TUMOR_peak_44153 chr6 24911392 24911524 + 4.09600 NA promoter-TSS (NM_014722) promoter-TSS (NM_014722) -60 NM_014722 9750 Hs.559459 NM_014722 HPRD:12881 FAM65B C6orf32|DIFF40|DIFF48|MYONAP|PL48 family with sequence similarity 65, member B protein-coding 13-PTNLD9-TUMOR_peak_56725 chrX 153770168 153770433 + 4.09600 NA promoter-TSS (NM_001099856) promoter-TSS (NM_001099856) -159 NM_001099856 8517 Hs.43505 NM_003639 HPRD:02217 IKBKG AMCBX1|FIP-3|FIP3|Fip3p|IKK-gamma|IP|IP1|IP2|IPD2|NEMO|ZC2HC9 inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase gamma protein-coding 13-PTNLD9-TUMOR_peak_53456 chr9 67297493 67297606 + 4.09285 NA Intergenic Intergenic -8057 NR_002817 375719 Hs.658215 NR_002817 AQP7P1 bA251O17.3 aquaporin 7 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_21805 chr17 63468852 63468998 + 4.09096 NA Intergenic Intergenic 88815 NM_004655 8313 Hs.156527 NM_004655 HPRD:04935 AXIN2 AXIL|ODCRCS axin 2 protein-coding 13-PTNLD9-TUMOR_peak_14221 chr12 125093687 125093862 + 4.09096 NA Intergenic Intergenic -41764 NM_001206654 9612 Hs.137510 NM_006312 HPRD:02910 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 13-PTNLD9-TUMOR_peak_32717 chr22 18942079 18942198 + 4.09096 NA Intergenic Intergenic -15873 NR_045121 26220 Hs.646438 NR_002733 DGCR5 LINC00037|NCRNA00037 DiGeorge syndrome critical region gene 5 (non-protein coding) pseudo 13-PTNLD9-TUMOR_peak_37870 chr4 8119185 8119279 + 4.09096 NA intron (NM_001130085, intron 1 of 17) intron (NM_001130085, intron 1 of 17) 41327 NM_001130083 84448 Hs.233404 NM_032432 ENSG00000163995 ABLIM2 - actin binding LIM protein family, member 2 protein-coding 13-PTNLD9-TUMOR_peak_56549 chrX 135991280 135991478 + 4.09096 NA Intergenic Intergenic -28440 NM_001164803 27316 Hs.380118 NM_002139 HPRD:02186 RBMX HNRNPG|HNRPG|RBMXP1|RBMXRT|RNMX|hnRNP-G RNA binding motif protein, X-linked protein-coding 13-PTNLD9-TUMOR_peak_46670 chr7 1164668 1164769 + 4.09096 NA intron (NM_001134395, intron 2 of 4) intron (NM_001134395, intron 2 of 4) 13175 NM_001134396 84310 Hs.653258 NM_032350 HPRD:14413 C7orf50 YCR016W chromosome 7 open reading frame 50 protein-coding 13-PTNLD9-TUMOR_peak_39568 chr4 147443516 147443625 + 4.09096 NA promoter-TSS (NM_032128) promoter-TSS (NM_032128) -447 NM_001029998 84068 Hs.659209 NM_032128 HPRD:13177 SLC10A7 C4orf13|P7 solute carrier family 10, member 7 protein-coding 13-PTNLD9-TUMOR_peak_53873 chr9 89735440 89735534 + 4.09096 NA Intergenic Intergenic -28072 NM_001001709 401535 Hs.657740 NM_001001709 HPRD:16988 C9orf170 - chromosome 9 open reading frame 170 protein-coding 13-PTNLD9-TUMOR_peak_17417 chr15 63414261 63414355 + 4.08743 NA exon (NM_032857, exon 1 of 6) exon (NM_032857, exon 1 of 6) 309 NM_171846 114294 Hs.410388 NM_032857 HPRD:07466 LACTB G24|MRPL56 lactamase, beta protein-coding 13-PTNLD9-TUMOR_peak_35632 chr3 124249201 124249340 + 4.08743 NA intron (NM_001024660, intron 33 of 59) intron (NM_001024660, intron 33 of 59) -54236 NM_007064 8997 Hs.8004 NM_003947 HPRD:06859 KALRN ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD kalirin, RhoGEF kinase protein-coding 13-PTNLD9-TUMOR_peak_11088 chr11 104700918 104701126 + 4.08743 NA Intergenic MER65C|LTR|ERV1 68375 NR_034070 100506742 Hs.476989 NM_001191016 ENSG00000204403 CASP12 CASP-12|CASP12P1 caspase 12 (gene/pseudogene) protein-coding 13-PTNLD9-TUMOR_peak_18695 chr16 19715960 19716054 + 4.08743 NA Intergenic Intergenic -11771 NM_153208 124152 Hs.460217 NM_153208 HPRD:11340 IQCK - IQ motif containing K protein-coding 13-PTNLD9-TUMOR_peak_52485 chr8 145070126 145070264 + 4.08743 NA Intergenic MER90a|LTR|ERV1 5969 NM_001009184 2907 Hs.594634 NM_000837 HPRD:15927 GRINA HNRGW|LFG1|NMDARA1|TMBIM3 glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding) protein-coding 13-PTNLD9-TUMOR_peak_489 chr1 15479203 15479349 + 4.08743 NA promoter-TSS (NM_001136218) promoter-TSS (NM_001136218) 248 NM_001136216 55092 Hs.465305 NM_018022 HPRD:07651 TMEM51 C1orf72 transmembrane protein 51 protein-coding 13-PTNLD9-TUMOR_peak_45839 chr6 107306650 107306787 + 4.08743 NA Intergenic LTR8|LTR|ERV1 -42658 NM_001142470 51250 Hs.486084 NM_016487 HPRD:12873 C6orf203 PRED31 chromosome 6 open reading frame 203 protein-coding 13-PTNLD9-TUMOR_peak_28419 chr2 130054451 130054545 + 4.08743 NA Intergenic Intergenic -23034 NR_122040 151121 Hs.531687 NM_001033657 ENSG00000204460 LOC151121 - uncharacterized LOC151121 ncRNA 13-PTNLD9-TUMOR_peak_25279 chr19 48759148 48759260 + 4.08743 NA promoter-TSS (NM_001184902) promoter-TSS (NM_001184902) -1 NM_001184902 22900 Hs.446146 NM_014959 HPRD:16425 CARD8 CARDINAL|DACAR|DAKAR|NDPP|NDPP1|TUCAN caspase recruitment domain family, member 8 protein-coding 13-PTNLD9-TUMOR_peak_56518 chrX 133804631 133804823 + 4.08627 NA Intergenic Intergenic -12214 NM_021796 10761 Hs.496811 NM_021796 HPRD:02245 PLAC1 CT92|OOSP2L placenta-specific 1 protein-coding 13-PTNLD9-TUMOR_peak_21910 chr17 70973193 70973344 + 4.08627 NA intron (NM_139177, intron 4 of 9) MLT1E2|LTR|ERVL-MaLR 115585 NM_139177 201266 Hs.221127 NM_139177 HPRD:15383 SLC39A11 C17orf26|ZIP11 solute carrier family 39, member 11 protein-coding 13-PTNLD9-TUMOR_peak_26596 chr2 37751091 37751214 + 4.08627 NA Intergenic Intergenic 148190 NM_006449 10602 Hs.369574 NM_006449 HPRD:09364 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein (Rho GTPase binding) 3 protein-coding 13-PTNLD9-TUMOR_peak_11074 chr11 103400051 103400223 + 4.08627 NA Intergenic Intergenic -320497 NR_039842 100616457 NR_039842 miRBase:MI0017326 MIR4693 - microRNA 4693 ncRNA 13-PTNLD9-TUMOR_peak_52049 chr8 130489870 130489986 + 4.08627 NA Intergenic Intergenic -236442 NR_033916 728724 Hs.49902 NR_033916 ENSG00000250400 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 13-PTNLD9-TUMOR_peak_15803 chr14 54430517 54430669 + 4.08627 NA Intergenic CpG -7039 NM_001202 652 Hs.68879 NM_001202 HPRD:00207 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 13-PTNLD9-TUMOR_peak_39908 chr4 178405880 178406033 + 4.08627 NA Intergenic MLT1F2|LTR|ERVL-MaLR -42299 NR_033655 175 Hs.207776 NM_000027 HPRD:01949 AGA AGU|ASRG|GA aspartylglucosaminidase protein-coding 13-PTNLD9-TUMOR_peak_46541 chr6 168134913 168135146 + 4.08627 NA Intergenic Intergenic -50562 NR_117092 441178 Hs.628956 NM_001025489 LOC441178 - uncharacterized LOC441178 ncRNA 13-PTNLD9-TUMOR_peak_16501 chr14 95688684 95688778 + 4.08627 NA intron (NM_024734, intron 3 of 12) intron (NM_024734, intron 3 of 12) -64384 NM_030621 23405 Hs.87889 NM_030621 HPRD:05875 DICER1 DCR1|Dicer|HERNA|MNG1|RMSE2 dicer 1, ribonuclease type III protein-coding 13-PTNLD9-TUMOR_peak_36162 chr3 140139662 140139756 + 4.08627 NA intron (NM_022131, intron 4 of 16) intron (NM_022131, intron 4 of 16) 87922 NR_108084 101927808 Hs.581236 NR_108084 ENSG00000250433 CLSTN2-AS1 - CLSTN2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_38197 chr4 38790078 38790172 + 4.08627 NA Intergenic Intergenic -5514 NM_001195108 81793 Hs.120551 NM_030956 HPRD:05884 TLR10 CD290 toll-like receptor 10 protein-coding 13-PTNLD9-TUMOR_peak_9136 chr11 13338095 13338284 + 4.08627 NA intron (NM_001030272, intron 2 of 18) intron (NM_001030272, intron 2 of 18) 38915 NM_001297722 406 Hs.65734 NM_001178 HPRD:03973 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator-like protein-coding 13-PTNLD9-TUMOR_peak_15943 chr14 61244792 61244886 + 4.08627 NA intron (NM_001177963, intron 1 of 6) intron (NM_001177963, intron 1 of 6) 43380 NM_002431 4331 Hs.509523 NM_002431 HPRD:04042 MNAT1 CAP35|MAT1|RNF66|TFB3 MNAT CDK-activating kinase assembly factor 1 protein-coding 13-PTNLD9-TUMOR_peak_41853 chr5 120836253 120836380 + 4.08627 NA Intergenic Intergenic 178071 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 13-PTNLD9-TUMOR_peak_20490 chr17 11586015 11586182 + 4.08627 NA intron (NM_001372, intron 19 of 68) MER5B|DNA|hAT-Charlie 84350 NM_001372 1770 Hs.567259 NM_001372 HPRD:04511 DNAH9 DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20 dynein, axonemal, heavy chain 9 protein-coding 13-PTNLD9-TUMOR_peak_37233 chr3 191366741 191366836 + 4.08627 NA Intergenic MLT1G3|LTR|ERVL-MaLR 187836 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_23680 chr19 2923182 2923276 + 4.08627 NA Intergenic MER68-int|LTR|ERVL 21740 NM_021217 58492 Hs.38004 NM_021217 HPRD:08936 ZNF77 pT1 zinc finger protein 77 protein-coding 13-PTNLD9-TUMOR_peak_38840 chr4 88477297 88477450 + 4.08627 NA Intergenic MLT1J|LTR|ERVL-MaLR -26718 NM_001291977 8404 Hs.62886 NM_004684 HPRD:06919 SPARCL1 MAST 9|MAST9|PIG33|SC1 SPARC-like 1 (hevin) protein-coding 13-PTNLD9-TUMOR_peak_15061 chr13 106242590 106242827 + 4.08627 NA Intergenic Intergenic -84678 NR_040247 282706 Hs.558713 NR_040247 HPRD:07597 DAOA-AS1 DAOA-AS|DAOAAS|G30 DAOA antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_8648 chr10 133879391 133879538 + 4.08627 NA Intergenic Intergenic -38849 NM_001105521 282973 Hs.106254 NM_194303 HPRD:12574 JAKMIP3 C10orf14|C10orf39|Jamip3|NECC2|bA140A10.5 Janus kinase and microtubule interacting protein 3 protein-coding 13-PTNLD9-TUMOR_peak_38882 chr4 90056124 90056316 + 4.08627 NA Intergenic MIR|SINE|MIR 22252 NM_145715 166815 Hs.58924 NM_145715 HPRD:18186 TIGD2 HEL106 tigger transposable element derived 2 protein-coding 13-PTNLD9-TUMOR_peak_23300 chr18 56257509 56257734 + 4.08627 NA intron (NM_052947, intron 3 of 12) intron (NM_052947, intron 3 of 12) 38568 NM_052947 115701 Hs.628152 NM_052947 HPRD:11019 ALPK2 HAK alpha-kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_34815 chr3 62741093 62741187 + 4.08627 NA intron (NM_183393, intron 2 of 26) intron (NM_183393, intron 2 of 26) 119924 NM_003716 8618 Hs.654933 NM_003716 HPRD:05236 CADPS CADPS1|CAPS|CAPS1 Ca++-dependent secretion activator protein-coding 13-PTNLD9-TUMOR_peak_38105 chr4 24914084 24914178 + 4.08627 NA intron (NM_173463, intron 1 of 12) intron (NM_173463, intron 1 of 12) 469 NM_001130726 91050 Hs.106432 NM_173463 HPRD:10908 CCDC149 - coiled-coil domain containing 149 protein-coding 13-PTNLD9-TUMOR_peak_41653 chr5 103012089 103012214 + 4.08627 NA Intergenic Intergenic -113649 NM_031438 83594 Hs.434289 NM_031438 HPRD:10123 NUDT12 - nudix (nucleoside diphosphate linked moiety X)-type motif 12 protein-coding 13-PTNLD9-TUMOR_peak_46456 chr6 160560432 160560657 + 4.08627 NA intron (NM_003057, intron 6 of 10) intron (NM_003057, intron 6 of 10) 17681 NM_153187 6580 Hs.117367 NM_003057 HPRD:04007 SLC22A1 HOCT1|OCT1|oct1_cds solute carrier family 22 (organic cation transporter), member 1 protein-coding 13-PTNLD9-TUMOR_peak_20469 chr17 9705765 9705903 + 4.08627 NA Intergenic Intergenic -11220 NM_001220493 201140 Hs.61684 NM_001105571 ENSG00000184544 DHRS7C SDR32C2 dehydrogenase/reductase (SDR family) member 7C protein-coding 13-PTNLD9-TUMOR_peak_52039 chr8 129800011 129800105 + 4.08627 NA Intergenic Intergenic -223133 NR_121673 101927774 Hs.628730 NR_121672 ENSG00000254275 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 13-PTNLD9-TUMOR_peak_43113 chr5 174039799 174039957 + 4.08627 NA Intergenic Intergenic -111697 NM_002449 4488 Hs.89404 NM_002449 HPRD:00421 MSX2 CRS2|FPP|HOX8|MSH|PFM|PFM1 msh homeobox 2 protein-coding 13-PTNLD9-TUMOR_peak_38235 chr4 41259390 41259490 + 4.08627 NA promoter-TSS (NR_102709) promoter-TSS (NR_102709) 542 NM_004181 7345 Hs.518731 NM_004181 HPRD:01877 UCHL1 HEL-117|NDGOA|PARK5|PGP 9.5|PGP9.5|PGP95|Uch-L1 ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase) protein-coding 13-PTNLD9-TUMOR_peak_16419 chr14 90553978 90554170 + 4.08627 NA intron (NM_022054, intron 1 of 1) Tigger14a|DNA|TcMar-Tigger 25965 NM_022054 56659 Hs.510191 NM_022054 HPRD:09563 KCNK13 K2p13.1|THIK-1|THIK1 potassium channel, subfamily K, member 13 protein-coding 13-PTNLD9-TUMOR_peak_26530 chr2 33094285 33094384 + 4.08627 NA intron (NR_027098, intron 2 of 5) SVA_F|Other|Other -13432 NR_027099 285045 Hs.434660 NR_027098 ENSG00000230876 LINC00486 - long intergenic non-protein coding RNA 486 ncRNA 13-PTNLD9-TUMOR_peak_21405 chr17 47724237 47724445 + 4.08627 NA intron (NM_001007229, intron 1 of 10) intron (NM_001007229, intron 1 of 10) 31184 NM_001007229 8405 Hs.463382 NM_003563 HPRD:16004 SPOP BTBD32|TEF2 speckle-type POZ protein protein-coding 13-PTNLD9-TUMOR_peak_17846 chr15 84034300 84034420 + 4.08627 NA Intergenic Intergenic -80892 NM_001717 646 Hs.459153 NM_001717 HPRD:11799 BNC1 BNC|BSN1|HsT19447 basonuclin 1 protein-coding 13-PTNLD9-TUMOR_peak_16972 chr15 33148241 33148335 + 4.08627 NA intron (NM_001277313, intron 17 of 20) intron (NM_001277313, intron 17 of 20) -137222 NR_109767 100131315 Hs.610545 NR_109767 LOC100131315 - uncharacterized LOC100131315 ncRNA 13-PTNLD9-TUMOR_peak_21846 chr17 65499490 65499611 + 4.08627 NA intron (NM_181671, intron 1 of 9) intron (NM_181671, intron 1 of 9) 126153 NM_012417 26207 Hs.591185 NM_012417 HPRD:05504 PITPNC1 M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1 phosphatidylinositol transfer protein, cytoplasmic 1 protein-coding 13-PTNLD9-TUMOR_peak_7150 chr10 43737997 43738143 + 4.08627 NA intron (NM_145313, intron 1 of 12) SVA_A|Other|Other -12883 NM_001282862 221002 Hs.125293 NM_145313 HPRD:15211 RASGEF1A CG4853 RasGEF domain family, member 1A protein-coding 13-PTNLD9-TUMOR_peak_26909 chr2 50371492 50371635 + 4.08627 NA intron (NM_001135659, intron 19 of 23) intron (NM_001135659, intron 19 of 23) 203331 NM_138735 9378 Hs.637685 NM_004801 HPRD:11858 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 13-PTNLD9-TUMOR_peak_38969 chr4 102902982 102903203 + 4.08627 NA intron (NM_001127507, intron 6 of 15) intron (NM_001127507, intron 6 of 15) 168109 NM_001083907 55024 Hs.480400 NM_017935 HPRD:09819 BANK1 BANK B-cell scaffold protein with ankyrin repeats 1 protein-coding 13-PTNLD9-TUMOR_peak_46099 chr6 135148339 135148434 + 4.08627 NA Intergenic Intergenic 122874 NM_170771 64577 Hs.486520 NM_022568 HPRD:06974 ALDH8A1 ALDH12|DJ352A20.2 aldehyde dehydrogenase 8 family, member A1 protein-coding 13-PTNLD9-TUMOR_peak_14415 chr13 22308189 22308298 + 4.08627 NA Intergenic Intergenic 63028 NM_002010 2254 Hs.111 NM_002010 HPRD:02951 FGF9 FGF-9|GAF|HBFG-9|HBGF-9|SYNS3 fibroblast growth factor 9 protein-coding 13-PTNLD9-TUMOR_peak_38068 chr4 20286776 20286871 + 4.08627 NA intron (NM_001289135, intron 4 of 35) intron (NM_001289135, intron 4 of 35) 31636 NM_004787 9353 Hs.29802 NM_004787 HPRD:04776 SLIT2 SLIL3|Slit-2 slit homolog 2 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_14042 chr12 120813955 120814135 + 4.08627 NA Intergenic Intergenic -7062 NM_002442 4440 Hs.158311 NM_002442 HPRD:04509 MSI1 - musashi RNA-binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_16049 chr14 65598209 65598303 + 4.08627 NA Intergenic Intergenic -28843 NR_073137 4149 Hs.285354 NM_002382 HPRD:01113 MAX bHLHd4 MYC associated factor X protein-coding 13-PTNLD9-TUMOR_peak_34385 chr3 44626260 44626364 + 4.08627 NA promoter-TSS (NM_173658) promoter-TSS (NM_173658) -144 NM_173658 285349 Hs.733134 NM_173658 ZNF660 - zinc finger protein 660 protein-coding 13-PTNLD9-TUMOR_peak_47438 chr7 47611455 47611563 + 4.08627 NA intron (NM_022748, intron 1 of 30) intron (NM_022748, intron 1 of 30) 10233 NM_022748 64759 Hs.520814 NM_022748 ENSG00000136205 TNS3 TEM6|TENS1 tensin 3 protein-coding 13-PTNLD9-TUMOR_peak_34121 chr3 26141298 26141479 + 4.08627 NA Intergenic Intergenic -226202 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 13-PTNLD9-TUMOR_peak_4250 chr1 165256750 165256880 + 4.08627 NA intron (NM_177398, intron 3 of 8) intron (NM_177398, intron 3 of 8) 68663 NM_001174069 4009 Hs.667312 NM_177398 HPRD:02623 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1, alpha protein-coding 13-PTNLD9-TUMOR_peak_29622 chr2 205356328 205356430 + 4.08627 NA Intergenic Intergenic -54137 NM_152526 117583 Hs.657382 NM_057177 HPRD:09795 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3LC|PAR3beta|Par3Lb par-3 family cell polarity regulator beta protein-coding 13-PTNLD9-TUMOR_peak_13614 chr12 103663853 103664052 + 4.08627 NA intron (NR_103526, intron 6 of 10) intron (NR_103526, intron 6 of 10) 225836 NR_103526 374470 Hs.534649 NM_198521 HPRD:13393 C12orf42 - chromosome 12 open reading frame 42 protein-coding 13-PTNLD9-TUMOR_peak_20849 chr17 31497009 31497210 + 4.08627 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 122897 NM_183377 40 Hs.368417 NM_001094 HPRD:03471 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid-sensing (proton-gated) ion channel 2 protein-coding 13-PTNLD9-TUMOR_peak_5276 chr1 206663649 206663743 + 4.08627 NA intron (NM_001193321, intron 15 of 20) intron (NM_001193321, intron 15 of 20) 15550 NR_106919 102466202 NR_106919 MIR6769B hsa-mir-6769b microRNA 6769b ncRNA 13-PTNLD9-TUMOR_peak_54272 chr9 105276982 105277078 + 4.08627 NA Intergenic Intergenic -4889 NR_103830 414319 Hs.385790 NR_103830 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 13-PTNLD9-TUMOR_peak_7714 chr10 73808484 73808578 + 4.08627 NA Intergenic MER102b|DNA|hAT-Charlie 40000 NM_001244950 9806 Hs.523009 NM_014767 HPRD:12146 SPOCK2 testican-2 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2 protein-coding 13-PTNLD9-TUMOR_peak_23085 chr18 45299145 45299239 + 4.08627 NA Intergenic Intergenic 157778 NM_005901 4087 Hs.12253 NM_005901 HPRD:03221 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding 13-PTNLD9-TUMOR_peak_17922 chr15 88204847 88204972 + 4.08627 NA Intergenic LTR23|LTR|ERV1 84749 NR_026869 145978 Hs.350808 NM_152454 HPRD:08101 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 13-PTNLD9-TUMOR_peak_469 chr1 13870480 13870677 + 4.08627 NA Intergenic Intergenic -30336 NM_001010847 126755 Hs.657356 NM_001010847 ENSG00000162494 LRRC38 - leucine rich repeat containing 38 protein-coding 13-PTNLD9-TUMOR_peak_428 chr1 11809347 11809447 + 4.08627 NA intron (NM_020350, intron 4 of 4) intron (NM_020350, intron 4 of 4) -12853 NM_001010881 284498 Hs.585415 NM_001010881 C1orf167 - chromosome 1 open reading frame 167 protein-coding 13-PTNLD9-TUMOR_peak_21585 chr17 55749463 55749592 + 4.08627 NA intron (NM_138962, intron 11 of 13) intron (NM_138962, intron 11 of 13) -63754 NR_110807 101927539 Hs.680439 NR_110807 ENSG00000263499 LOC101927539 - uncharacterized LOC101927539 ncRNA 13-PTNLD9-TUMOR_peak_45233 chr6 47177485 47177655 + 4.08627 NA Intergenic L1PA11|LINE|L1 100113 NM_014452 27242 Hs.443577 NM_014452 HPRD:05759 TNFRSF21 BM-018|CD358|DR6 tumor necrosis factor receptor superfamily, member 21 protein-coding 13-PTNLD9-TUMOR_peak_41246 chr5 72600206 72600300 + 4.08627 NA Intergenic Intergenic 131230 NM_153217 134288 Hs.508588 NM_153217 HPRD:14432 TMEM174 - transmembrane protein 174 protein-coding 13-PTNLD9-TUMOR_peak_17421 chr15 63625048 63625188 + 4.08627 NA intron (NM_001218, intron 8 of 10) L2c|LINE|L2 49191 NM_001218 771 Hs.210995 NM_001218 CA12 CAXII|HsT18816 carbonic anhydrase XII protein-coding 13-PTNLD9-TUMOR_peak_8895 chr11 4693918 4694018 + 4.08627 NA Intergenic Intergenic 25108 NM_030774 81285 Hs.501758 NM_030774 HPRD:17736 OR51E2 OR51E3P|OR52A2|PSGR olfactory receptor, family 51, subfamily E, member 2 protein-coding 13-PTNLD9-TUMOR_peak_53009 chr9 32863501 32863599 + 4.08627 NA Intergenic Intergenic 80053 NM_212558 401498 Hs.522063 NM_212558 TMEM215 - transmembrane protein 215 protein-coding 13-PTNLD9-TUMOR_peak_10913 chr11 93177900 93178079 + 4.08627 NA Intergenic L1PA6|LINE|L1 98557 NM_020179 56935 Hs.438064 NM_020179 HPRD:17008 SMCO4 C11orf75|FN5 single-pass membrane protein with coiled-coil domains 4 protein-coding 13-PTNLD9-TUMOR_peak_14880 chr13 76723224 76723334 + 4.08627 NA Intergenic Intergenic 278105 NM_001257995 729420 Hs.586820 NM_001257995 ENSG00000178734 LMO7DN C13orf45 LMO7 downstream neighbor protein-coding 13-PTNLD9-TUMOR_peak_1939 chr1 59118315 59118483 + 4.08627 NA Intergenic Intergenic 47348 NM_001085487 114803 Hs.744921 NM_001085487 ENSG00000162601 MYSM1 2A-DUB|2ADUB Myb-like, SWIRM and MPN domains 1 protein-coding 13-PTNLD9-TUMOR_peak_11619 chr11 129284500 129284658 + 4.08627 NA intron (NM_003658, intron 1 of 3) intron (NM_003658, intron 1 of 3) 38698 NM_003658 8538 Hs.591944 NM_003658 HPRD:16074 BARX2 - BARX homeobox 2 protein-coding 13-PTNLD9-TUMOR_peak_34156 chr3 29781348 29781456 + 4.08627 NA intron (NM_001003792, intron 5 of 13) intron (NM_001003792, intron 5 of 13) 194245 NR_046556 100873977 Hs.581453 NR_046556 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_55577 chrX 15808512 15808673 + 4.08627 NA promoter-TSS (NM_005089) promoter-TSS (NM_005089) 18 NM_005089 8233 Hs.171909 NM_005089 HPRD:02068 ZRSR2 U2AF1-RS2|U2AF1L2|U2AF1RS2|URP zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2 protein-coding 13-PTNLD9-TUMOR_peak_54115 chr9 99181572 99181666 + 4.08627 NA promoter-TSS (NM_153695) promoter-TSS (NM_153695) -950 NM_153695 195828 Hs.494557 NM_153695 HPRD:18330 ZNF367 AFF29|CDC14B|ZFF29 zinc finger protein 367 protein-coding 13-PTNLD9-TUMOR_peak_48873 chr7 117241088 117241206 + 4.08627 NA intron (NM_000492, intron 15 of 26) intron (NM_000492, intron 15 of 26) 121130 NM_000492 1080 Hs.489786 NM_000492 HPRD:03883 CFTR ABC35|ABCC7|CF|CFTR/MRP|MRP7|TNR-CFTR|dJ760C5.1 cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7) protein-coding 13-PTNLD9-TUMOR_peak_1043 chr1 34331940 34332198 + 4.08627 NA intron (NM_052896, intron 5 of 69) intron (NM_052896, intron 5 of 69) 2389 NR_033264 127540 Hs.568628 NM_145205 HPRD:14038 HMGB4 dJ1007G16.5 high mobility group box 4 protein-coding 13-PTNLD9-TUMOR_peak_46369 chr6 155451082 155451176 + 4.08627 NA exon (NM_012454, exon 3 of 26) exon (NM_012454, exon 3 of 26) 39706 NM_012454 26230 Hs.586279 NM_012454 HPRD:05273 TIAM2 STEF|TIAM-2 T-cell lymphoma invasion and metastasis 2 protein-coding 13-PTNLD9-TUMOR_peak_50121 chr8 12938070 12938271 + 4.08627 NA Intergenic Intergenic 35583 NM_001164271 10395 Hs.134296 NM_006094 HPRD:05035 DLC1 ARHGAP7|HP|STARD12|p122-RhoGAP DLC1 Rho GTPase activating protein protein-coding 13-PTNLD9-TUMOR_peak_55512 chrX 8725977 8726165 + 4.08627 NA Intergenic Intergenic -25844 NM_000216 3730 Hs.521869 NM_000216 HPRD:02393 KAL1 ADMLX|HH1|HHA|KAL|KALIG-1|KMS|WFDC19 Kallmann syndrome 1 sequence protein-coding 13-PTNLD9-TUMOR_peak_2198 chr1 74059231 74059342 + 4.08627 NA Intergenic Intergenic 287433 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 13-PTNLD9-TUMOR_peak_44279 chr6 27012962 27013120 + 4.08627 NA Intergenic LTR12C|LTR|ERV1 -24956 NR_026776 100270746 Hs.590428 NR_026776 LOC100270746 - uncharacterized LOC100270746 ncRNA 13-PTNLD9-TUMOR_peak_9683 chr11 46071762 46071898 + 4.08627 NA intron (NM_001101802, intron 5 of 17) intron (NM_001101802, intron 5 of 17) 71155 NM_001101802 51317 Hs.502458 NM_016621 ENSG00000135365 PHF21A BHC80 PHD finger protein 21A protein-coding 13-PTNLD9-TUMOR_peak_34486 chr3 48184055 48184158 + 4.08627 NA Intergenic Intergenic 45695 NM_001789 993 Hs.437705 NM_001789 HPRD:00305 CDC25A CDC25A2 cell division cycle 25A protein-coding 13-PTNLD9-TUMOR_peak_27862 chr2 102375743 102375837 + 4.08627 NA intron (NM_145686, intron 2 of 30) intron (NM_145686, intron 2 of 30) 61252 NM_145687 9448 Hs.701013 NM_004834 HPRD:05235 MAP4K4 FLH21957|HEL-S-31|HGK|MEKKK4|NIK mitogen-activated protein kinase kinase kinase kinase 4 protein-coding 13-PTNLD9-TUMOR_peak_54386 chr9 111763795 111763893 + 4.08627 NA intron (NM_003798, intron 1 of 18) MLT1F1|LTR|ERVL-MaLR 12030 NM_003798 8727 Hs.58488 NM_003798 HPRD:09210 CTNNAL1 ACRP|CLLP|alpha-CATU catenin (cadherin-associated protein), alpha-like 1 protein-coding 13-PTNLD9-TUMOR_peak_27557 chr2 89286617 89286730 + 4.08627 NA Intergenic Intergenic 174789 NR_039635 100616399 NR_039635 miRBase:MI0016776 MIR4436A - microRNA 4436a ncRNA 13-PTNLD9-TUMOR_peak_54791 chr9 129616085 129616217 + 4.08627 NA Intergenic Intergenic -6793 NM_001099270 403341 Hs.177633 NM_203482 ENSG00000177125 ZBTB34 ZNF918 zinc finger and BTB domain containing 34 protein-coding 13-PTNLD9-TUMOR_peak_43687 chr6 7673366 7673462 + 4.08627 NA Intergenic Intergenic -53597 NM_001718 654 Hs.285671 NM_001718 HPRD:00211 BMP6 VGR|VGR1 bone morphogenetic protein 6 protein-coding 13-PTNLD9-TUMOR_peak_6169 chr1 246383109 246383203 + 4.08627 NA intron (NM_022743, intron 5 of 11) LTR1D|LTR|ERV1 197558 NM_022743 64754 Hs.567571 NM_022743 HPRD:12297 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_30576 chr20 21008268 21008378 + 4.08627 NA Intergenic Intergenic -98301 NM_001163022 55857 Hs.187635 NM_018474 KIZ C20orf19|Kizuna|NCRNA00153|PLK1S1|RP69 kizuna centrosomal protein protein-coding 13-PTNLD9-TUMOR_peak_56265 chrX 99354123 99354280 + 4.08627 NA Intergenic LTR40b|LTR|ERVL -159360 NR_024608 442459 Hs.706599 NM_001127438 XRCC6P5 - X-ray repair complementing defective repair in Chinese hamster cells 6 pseudogene 5 pseudo 13-PTNLD9-TUMOR_peak_5341 chr1 210771213 210771307 + 4.08627 NA intron (NM_018194, intron 10 of 11) L1MA3|LINE|L1 268620 NM_001170580 55733 Hs.58650 NM_018194 HPRD:12041 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 13-PTNLD9-TUMOR_peak_7671 chr10 73029607 73029701 + 4.08627 NA intron (NM_001244889, intron 1 of 15) L2a|LINE|L2 -49356 NR_033414 55315 Hs.438419 NM_018344 HPRD:11570 SLC29A3 ENT3|HCLAP|HJCD|PHID solute carrier family 29 (equilibrative nucleoside transporter), member 3 protein-coding 13-PTNLD9-TUMOR_peak_18006 chr15 93251650 93251757 + 4.08627 NA Intergenic L2b|LINE|L2 -52672 NM_207446 400451 Hs.27373 NM_207446 HPRD:14220 FAM174B - family with sequence similarity 174, member B protein-coding 13-PTNLD9-TUMOR_peak_22817 chr18 23317665 23317789 + 4.08627 NA Intergenic Intergenic 352884 NM_001007559 6760 Hs.129261 NM_005637 HPRD:02559 SS18 SSXT|SYT synovial sarcoma translocation, chromosome 18 protein-coding 13-PTNLD9-TUMOR_peak_14245 chr12 125383086 125383194 + 4.08627 NA Intergenic Intergenic 16447 NM_021009 7316 Hs.520348 NM_021009 HPRD:07038 UBC HMG20 ubiquitin C protein-coding 13-PTNLD9-TUMOR_peak_21025 chr17 38738717 38738811 + 4.08627 NA Intergenic Intergenic -17028 NM_001838 1236 Hs.370036 NM_001838 HPRD:02588 CCR7 BLR2|CD197|CDw197|CMKBR7|EBI1 chemokine (C-C motif) receptor 7 protein-coding 13-PTNLD9-TUMOR_peak_43089 chr5 173307692 173307786 + 4.08627 NA Intergenic Intergenic -7592 NM_030627 80315 Hs.127126 NM_030627 HPRD:16746 CPEB4 - cytoplasmic polyadenylation element binding protein 4 protein-coding 13-PTNLD9-TUMOR_peak_45913 chr6 112134021 112134136 + 4.08627 NA intron (NM_002037, intron 2 of 13) intron (NM_002037, intron 2 of 13) -53744 NM_153048 2534 Hs.390567 NM_002037 HPRD:00655 FYN SLK|SYN|p59-FYN FYN proto-oncogene, Src family tyrosine kinase protein-coding 13-PTNLD9-TUMOR_peak_34351 chr3 42725447 42725541 + 4.08627 NA Intergenic AluSq2|SINE|Alu -1517 NM_152393 131377 Hs.350288 NM_152393 HPRD:11058 KLHL40 KBTBD5|NEM8|SRYP|SYRP kelch-like family member 40 protein-coding 13-PTNLD9-TUMOR_peak_28903 chr2 161777638 161777814 + 4.08627 NA Intergenic Intergenic -215740 NM_133484 10010 Hs.132257 NM_004180 HPRD:04870 TANK I-TRAF|ITRAF|TRAF2 TRAF family member-associated NFKB activator protein-coding 13-PTNLD9-TUMOR_peak_56488 chrX 130528520 130528661 + 4.08627 NA Intergenic MER45C|DNA|hAT-Tip100 -105187 NM_001555 3547 Hs.22111 NM_001555 HPRD:02138 IGSF1 CHTE|IGCD1|IGDC1|INHBP|PGSF2|p120 immunoglobulin superfamily, member 1 protein-coding 13-PTNLD9-TUMOR_peak_42182 chr5 135425625 135425748 + 4.08627 NA Intergenic Intergenic -9400 NR_030583 100126299 NR_030583 ENSG00000270123 VTRNA2-1 CBL-3|CBL3|MIR886|MIRN886|VTRNA2|hsa-mir-886|hvg-5|nc886 vault RNA 2-1 ncRNA 13-PTNLD9-TUMOR_peak_38013 chr4 13909091 13909268 + 4.08627 NA intron (NR_121681, intron 3 of 3) intron (NR_121681, intron 3 of 3) -204413 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 13-PTNLD9-TUMOR_peak_40493 chr5 24742563 24742724 + 4.08627 NA Intergenic Intergenic -97558 NM_006727 1008 Hs.92489 NM_006727 HPRD:05187 CDH10 - cadherin 10, type 2 (T2-cadherin) protein-coding 13-PTNLD9-TUMOR_peak_15942 chr14 61242120 61242318 + 4.08627 NA intron (NM_001177963, intron 1 of 6) L2a|LINE|L2 40760 NM_002431 4331 Hs.509523 NM_002431 HPRD:04042 MNAT1 CAP35|MAT1|RNF66|TFB3 MNAT CDK-activating kinase assembly factor 1 protein-coding 13-PTNLD9-TUMOR_peak_46197 chr6 144066679 144066953 + 4.08627 NA intron (NM_001100166, intron 2 of 11) intron (NM_001100166, intron 2 of 11) 67714 NM_001100165 9749 Hs.102471 NM_014721 HPRD:16378 PHACTR2 C6orf56 phosphatase and actin regulator 2 protein-coding 13-PTNLD9-TUMOR_peak_20593 chr17 18753490 18753584 + 4.08627 NA Intergenic AluJb|SINE|Alu -6075 NM_001243936 5636 Hs.632236 NM_002767 HPRD:04789 PRPSAP2 PAP41 phosphoribosyl pyrophosphate synthetase-associated protein 2 protein-coding 13-PTNLD9-TUMOR_peak_38040 chr4 16198249 16198378 + 4.08627 NA intron (NM_153365, intron 3 of 13) intron (NM_153365, intron 3 of 13) 29848 NM_153365 202018 Hs.479223 NM_153365 ENSG00000169762 TAPT1 CMVFR transmembrane anterior posterior transformation 1 protein-coding 13-PTNLD9-TUMOR_peak_11280 chr11 114178309 114178473 + 4.08627 NA intron (NM_006169, intron 2 of 2) L2b|LINE|L2 11856 NM_006169 4837 Hs.503911 NM_006169 HPRD:02478 NNMT - nicotinamide N-methyltransferase protein-coding 13-PTNLD9-TUMOR_peak_46275 chr6 150176255 150176357 + 4.08627 NA intron (NM_032832, intron 1 of 6) PABL_B|LTR|ERV1 -8328 NR_045126 100652739 Hs.642734 NR_045126 ENSG00000223701 RAET1E-AS1 RAET1G-AS1 RAET1E antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_25996 chr2 7332224 7332331 + 4.08627 NA Intergenic Intergenic -114266 NR_110252 101929452 NR_110252 ENSG00000223884 LOC101929452 - uncharacterized LOC101929452 ncRNA 13-PTNLD9-TUMOR_peak_14626 chr13 40683516 40683610 + 4.08627 NA Intergenic Intergenic -72383 NR_046870 100874127 Hs.578028 NR_046870 ENSG00000230710 LINC00332 NCRNA00332 long intergenic non-protein coding RNA 332 ncRNA 13-PTNLD9-TUMOR_peak_52048 chr8 130472163 130472291 + 4.08627 NA Intergenic Intergenic -218741 NR_033916 728724 Hs.49902 NR_033916 ENSG00000250400 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 13-PTNLD9-TUMOR_peak_17522 chr15 68835694 68835827 + 4.08627 NA Intergenic Intergenic -35548 NM_006091 10391 Hs.551213 NM_006091 HPRD:05416 CORO2B CLIPINC coronin, actin binding protein, 2B protein-coding 13-PTNLD9-TUMOR_peak_45929 chr6 113441955 113442049 + 4.08627 NA Intergenic Intergenic -736525 NM_002356 4082 Hs.519909 NM_002356 HPRD:07519 MARCKS 80K-L|MACS|PKCSL|PRKCSL myristoylated alanine-rich protein kinase C substrate protein-coding 13-PTNLD9-TUMOR_peak_16999 chr15 34348565 34348659 + 4.08627 NA intron (NM_012125, intron 2 of 2) MER103C|DNA|hAT-Charlie -17309 NM_020371 57099 Hs.555966 NM_020371 HPRD:05588 AVEN PDCD12 apoptosis, caspase activation inhibitor protein-coding 13-PTNLD9-TUMOR_peak_26250 chr2 19954780 19954959 + 4.08627 NA Intergenic Intergenic -113746 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 13-PTNLD9-TUMOR_peak_55516 chrX 9572645 9572844 + 4.08627 NA intron (NM_001139468, intron 3 of 17) intron (NM_001139468, intron 3 of 17) 139543 NM_005647 6907 Hs.495656 NM_005647 HPRD:02183 TBL1X EBI|SMAP55|TBL1 transducin (beta)-like 1X-linked protein-coding 13-PTNLD9-TUMOR_peak_5840 chr1 232622232 232622413 + 4.08627 NA intron (NM_020808, intron 3 of 20) intron (NM_020808, intron 3 of 20) 28921 NM_020808 57568 Hs.745009 NM_020808 HPRD:15346 SIPA1L2 SPAL2 signal-induced proliferation-associated 1 like 2 protein-coding 13-PTNLD9-TUMOR_peak_54759 chr9 127497469 127497586 + 4.08627 NA intron (NM_033334, intron 1 of 9) L2c|LINE|L2 36062 NM_033334 2649 Hs.20131 NM_001489 HPRD:04147 NR6A1 CT150|GCNF|GCNF1|NR61|RTR|hGCNF|hRTR nuclear receptor subfamily 6, group A, member 1 protein-coding 13-PTNLD9-TUMOR_peak_21895 chr17 70340836 70340930 + 4.08627 NA Intergenic THE1C|LTR|ERVL-MaLR 223722 NM_000346 6662 Hs.647409 NM_000346 HPRD:06427 SOX9 CMD1|CMPD1|SRA1 SRY (sex determining region Y)-box 9 protein-coding 13-PTNLD9-TUMOR_peak_11474 chr11 122954340 122954548 + 4.08627 NA exon (NM_024769, exon 4 of 7) exon (NM_024769, exon 4 of 7) -21401 NM_153201 3312 Hs.180414 NM_006597 HPRD:07205 HSPA8 HEL-33|HEL-S-72p|HSC54|HSC70|HSC71|HSP71|HSP73|HSPA10|LAP-1|LAP1|NIP71 heat shock 70kDa protein 8 protein-coding 13-PTNLD9-TUMOR_peak_50316 chr8 22775849 22776057 + 4.08627 NA intron (NM_144962, intron 3 of 6) intron (NM_144962, intron 3 of 6) 9468 NM_144962 157310 Hs.491242 NM_144962 HPRD:11424 PEBP4 CORK-1|CORK1|GWTM1933|HEL-S-300|PEBP-4|PRO4408|hPEBP4 phosphatidylethanolamine-binding protein 4 protein-coding 13-PTNLD9-TUMOR_peak_21375 chr17 47022171 47022268 + 4.08627 NA promoter-TSS (NM_007241) promoter-TSS (NM_007241) -65 NM_007241 11267 Hs.127249 NM_007241 SNF8 Dot3|EAP30|VPS22 SNF8, ESCRT-II complex subunit protein-coding 13-PTNLD9-TUMOR_peak_52138 chr8 133564662 133564847 + 4.08627 NA Intergenic Intergenic 8972 NR_026684 93668 Hs.545218 NR_026684 ENSG00000253521 HPYR1 HPRG1|LINC00027|NCRNA00027 Helicobacter pylori responsive 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_45206 chr6 46605071 46605213 + 4.08627 NA intron (NM_001278738, intron 4 of 11) intron (NM_001278738, intron 4 of 11) 15425 NM_016593 51302 Hs.387367 NM_016593 HPRD:07067 CYP39A1 - cytochrome P450, family 39, subfamily A, polypeptide 1 protein-coding 13-PTNLD9-TUMOR_peak_43718 chr6 9007351 9007465 + 4.08627 NA Intergenic LTR58|LTR|ERV1 354966 NR_004855 728655 Hs.214343 NR_004855 ENSG00000251164 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 13-PTNLD9-TUMOR_peak_17153 chr15 43496584 43496678 + 4.08627 NA intron (NM_001114134, intron 10 of 12) L2b|LINE|L2 16692 NM_001114134 2038 Hs.368642 NM_000119 HPRD:01517 EPB42 PA|SPH5 erythrocyte membrane protein band 4.2 protein-coding 13-PTNLD9-TUMOR_peak_17554 chr15 70310283 70310377 + 4.08627 NA Intergenic Intergenic 61477 NR_030714 693214 NR_030714 MIR629 MIRN629|hsa-mir-629 microRNA 629 ncRNA 13-PTNLD9-TUMOR_peak_40085 chr4 190478832 190478999 + 4.08627 NA Intergenic C-rich|Low_complexity|Low_complexity -101845 NR_121679 101928971 Hs.519164 NR_121679 ENSG00000250739 LINC01262 TCONS_l2_00021807 long intergenic non-protein coding RNA 1262 ncRNA 13-PTNLD9-TUMOR_peak_38848 chr4 89166580 89166717 + 4.08627 NA Intergenic MER52A|LTR|ERV1 -14174 NM_001257386 9429 Hs.480218 NM_004827 HPRD:04783 ABCG2 ABC15|ABCP|BCRP|BCRP1|BMDP|CD338|CDw338|EST157481|GOUT1|MRX|MXR|MXR1|UAQTL1 ATP-binding cassette, sub-family G (WHITE), member 2 protein-coding 13-PTNLD9-TUMOR_peak_32288 chr21 38807520 38807614 + 4.08627 NA intron (NM_101395, intron 3 of 12) intron (NM_101395, intron 3 of 12) 14965 NM_001396 1859 Hs.368240 NM_001396 HPRD:09018 DYRK1A DYRK|DYRK1|HP86|MNB|MNBH|MRD7 dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A protein-coding 13-PTNLD9-TUMOR_peak_14691 chr13 44854732 44854829 + 4.08627 NA Intergenic Intergenic -84444 NR_107046 102465876 NR_107046 MIR8079 hsa-mir-8079 microRNA 8079 ncRNA 13-PTNLD9-TUMOR_peak_56142 chrX 72434654 72434824 + 4.08627 NA promoter-TSS (NM_021963) promoter-TSS (NM_021963) -29 NM_021963 4674 Hs.66180 NM_021963 HPRD:02066 NAP1L2 BPX nucleosome assembly protein 1-like 2 protein-coding 13-PTNLD9-TUMOR_peak_41987 chr5 129856085 129856179 + 4.08627 NA Intergenic Intergenic 615609 NM_175856 337876 Hs.213137 NM_175856 HPRD:16766 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 13-PTNLD9-TUMOR_peak_52231 chr8 136528159 136528363 + 4.08627 NA intron (NM_006558, intron 1 of 8) Tigger3c|DNA|TcMar-Tigger 58545 NM_006558 10656 Hs.444558 NM_006558 HPRD:10007 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH domain containing, RNA binding, signal transduction associated 3 protein-coding 13-PTNLD9-TUMOR_peak_53729 chr9 81254600 81254863 + 4.08627 NA Intergenic MER5B|DNA|hAT-Charlie 342740 NM_021154 29968 Hs.494261 NM_021154 HPRD:17918 PSAT1 EPIP|PSA|PSAT phosphoserine aminotransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_6439 chr10 8435634 8435744 + 4.08627 NA Intergenic Intergenic -125421 NR_108058 100507143 Hs.258979 NR_108058 ENSG00000232170 LINC00708 GS1-756B1.2 long intergenic non-protein coding RNA 708 ncRNA 13-PTNLD9-TUMOR_peak_39797 chr4 163771119 163771275 + 4.08627 NA Intergenic Intergenic 316876 NM_138386 92345 Hs.129095 NM_138386 HPRD:10054 NAF1 - nuclear assembly factor 1 ribonucleoprotein protein-coding 13-PTNLD9-TUMOR_peak_8428 chr10 119423355 119423452 + 4.08627 NA Intergenic Intergenic -118824 NR_002791 196047 Hs.312592 NR_002791 EMX2OS EMX2-AS1|NCRNA00045 EMX2 opposite strand/antisense RNA ncRNA 13-PTNLD9-TUMOR_peak_29410 chr2 193365707 193365801 + 4.08627 NA Intergenic LTR1D|LTR|ERV1 -248817 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1, prostate-specific transcript (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_7678 chr10 73109314 73109424 + 4.08627 NA intron (NM_001174098, intron 3 of 5) MLT1K|LTR|ERVL-MaLR 30359 NM_018344 55315 Hs.438419 NM_018344 HPRD:11570 SLC29A3 ENT3|HCLAP|HJCD|PHID solute carrier family 29 (equilibrative nucleoside transporter), member 3 protein-coding 13-PTNLD9-TUMOR_peak_22311 chr17 80111892 80111986 + 4.08627 NA intron (NM_198082, intron 14 of 16) intron (NM_198082, intron 14 of 16) -55833 NM_004104 2194 Hs.83190 NM_004104 HPRD:02567 FASN FAS|OA-519|SDR27X1 fatty acid synthase protein-coding 13-PTNLD9-TUMOR_peak_51325 chr8 95791814 95792042 + 4.08627 NA intron (NM_181787, intron 14 of 18) intron (NM_181787, intron 14 of 18) -43590 NR_073444 55656 Hs.727669 NM_017864 HPRD:08626 INTS8 C8orf52|INT8 integrator complex subunit 8 protein-coding 13-PTNLD9-TUMOR_peak_46373 chr6 156103548 156103717 + 4.08627 NA Intergenic MER31B|LTR|ERV1 -326595 NM_015718 50508 Hs.247776 NM_015718 HPRD:06165 NOX3 GP91-3|MOX-2 NADPH oxidase 3 protein-coding 13-PTNLD9-TUMOR_peak_50453 chr8 27995083 27995179 + 4.08627 NA intron (NM_001284224, intron 7 of 12) intron (NM_001284224, intron 7 of 12) 44547 NM_001284225 55140 Hs.491336 NM_018091 HPRD:10936 ELP3 KAT9 elongator acetyltransferase complex subunit 3 protein-coding 13-PTNLD9-TUMOR_peak_22711 chr18 18633297 18633391 + 4.08627 NA intron (NM_005406, intron 2 of 32) Cheshire|DNA|hAT-Charlie 58468 NM_005406 6093 Hs.306307 NM_005406 ROCK1 P160ROCK|ROCK-I Rho-associated, coiled-coil containing protein kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_29262 chr2 182521822 182521932 + 4.08627 NA promoter-TSS (NM_001160277) promoter-TSS (NM_001160277) -43 NR_027689 375298 Hs.732358 NM_201548 HPRD:09757 CERKL RP26 ceramide kinase-like protein-coding 13-PTNLD9-TUMOR_peak_7896 chr10 83950428 83950597 + 4.08627 NA intron (NM_001165973, intron 2 of 10) MLT1L|LTR|ERVL-MaLR 42164 NR_120666 101929590 Hs.733268 NR_120666 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_14852 chr13 73599683 73599829 + 4.08627 NA Intergenic Intergenic -29358 NM_001286818 688 Hs.508234 NM_001730 HPRD:04212 KLF5 BTEB2|CKLF|IKLF Kruppel-like factor 5 (intestinal) protein-coding 13-PTNLD9-TUMOR_peak_5382 chr1 214553825 214554063 + 4.08627 NA intron (NM_005401, intron 13 of 18) intron (NM_005401, intron 13 of 18) 99379 NM_020197 56950 Hs.66170 NM_020197 HPRD:15406 SMYD2 HSKM-B|KMT3C|ZMYND14 SET and MYND domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_14877 chr13 76346092 76346204 + 4.08627 NA intron (NM_015842, intron 1 of 26) intron (NM_015842, intron 1 of 26) 11351 NM_015842 4008 Hs.207631 NM_005358 HPRD:05078 LMO7 FBX20|FBXO20|LOMP LIM domain 7 protein-coding 13-PTNLD9-TUMOR_peak_11449 chr11 122037838 122038065 + 4.08627 NA intron (NR_024430, intron 2 of 3) L2c|LINE|L2 -14935 NR_029515 406892 NR_029515 miRBase:MI0000102 MIR100 MIRN100|miR-100 microRNA 100 ncRNA 13-PTNLD9-TUMOR_peak_14663 chr13 42575872 42576064 + 4.08627 NA Intergenic Intergenic -38204 NM_001204504 160851 Hs.630380 NM_152910 HPRD:07237 DGKH DGKeta diacylglycerol kinase, eta protein-coding 13-PTNLD9-TUMOR_peak_6145 chr1 245486117 245486211 + 4.08627 NA intron (NM_018012, intron 2 of 14) intron (NM_018012, intron 2 of 14) 167877 NM_018012 55083 Hs.368096 NM_018012 ENSG00000162849 KIF26B - kinesin family member 26B protein-coding 13-PTNLD9-TUMOR_peak_25046 chr19 42037926 42038066 + 4.08627 NA Intergenic Intergenic -3864 NR_110724 101927931 Hs.158951 NR_110724 LINC01480 - long intergenic non-protein coding RNA 1480 ncRNA 13-PTNLD9-TUMOR_peak_42452 chr5 142850693 142850832 + 4.08627 NA Intergenic L2a|LINE|L2 -35685 NM_001018075 2908 Hs.122926 NM_000176 HPRD:00679 NR3C1 GCCR|GCR|GR|GRL nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) protein-coding 13-PTNLD9-TUMOR_peak_40349 chr5 13326023 13326117 + 4.08627 NA Intergenic Intergenic 618519 NM_001369 1767 Hs.212360 NM_001369 HPRD:04514 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein, axonemal, heavy chain 5 protein-coding 13-PTNLD9-TUMOR_peak_7806 chr10 78406211 78406315 + 4.08627 NA Intergenic Intergenic -241539 NR_120655 101929328 Hs.664552 NR_120655 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_50977 chr8 55947498 55947639 + 4.08627 NA Intergenic MIRb|SINE|MIR -67449 NM_052898 114786 Hs.130197 NM_052898 XKR4 XRG4 XK, Kell blood group complex subunit-related family, member 4 protein-coding 13-PTNLD9-TUMOR_peak_50414 chr8 26713758 26713852 + 4.08627 NA intron (NM_033303, intron 1 of 2) intron (NM_033303, intron 1 of 2) 9117 NM_033304 148 Hs.709175 NM_000680 HPRD:00081 ADRA1A ADRA1C|ADRA1L1|ALPHA1AAR adrenoceptor alpha 1A protein-coding 13-PTNLD9-TUMOR_peak_5792 chr1 230686329 230686476 + 4.08627 NA Intergenic Intergenic -91800 NM_007357 22796 Hs.211800 NM_007357 HPRD:07372 COG2 LDLC component of oligomeric golgi complex 2 protein-coding 13-PTNLD9-TUMOR_peak_26001 chr2 7832446 7832590 + 4.08627 NA Intergenic L1M5|LINE|L1 207268 NR_110256 101929551 Hs.116006 NR_110256 LOC101929551 - uncharacterized LOC101929551 ncRNA 13-PTNLD9-TUMOR_peak_41937 chr5 126300818 126301021 + 4.08627 NA intron (NM_178450, intron 1 of 4) MIRb|SINE|MIR 65581 NM_178450 115123 Hs.132441 NM_178450 HPRD:14362 MARCH3 MARCH-III|RNF173 membrane-associated ring finger (C3HC4) 3, E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_19330 chr16 51874118 51874212 + 4.08627 NA Intergenic Intergenic 77735 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LOC101927364 - uncharacterized LOC101927364 ncRNA 13-PTNLD9-TUMOR_peak_13402 chr12 80028822 80029027 + 4.08627 NA intron (NM_002583, intron 2 of 6) L2|LINE|L2 55866 NM_002583 5074 Hs.643130 NM_002583 PAWR PAR4|Par-4 PRKC, apoptosis, WT1, regulator protein-coding 13-PTNLD9-TUMOR_peak_21889 chr17 69897102 69897196 + 4.08627 NA Intergenic Intergenic 124971 NR_110876 102723505 Hs.547482 NR_110876 LOC102723505 - uncharacterized LOC102723505 ncRNA 13-PTNLD9-TUMOR_peak_9743 chr11 47814385 47814572 + 4.08627 NA exon (NM_015231, exon 28 of 36) exon (NM_015231, exon 28 of 36) -25485 NM_015308 23360 Hs.6834 NM_015308 HPRD:10996 FNBP4 FBP30 formin binding protein 4 protein-coding 13-PTNLD9-TUMOR_peak_1072 chr1 35272117 35272271 + 4.08627 NA Intergenic Intergenic 13595 NM_002060 2701 Hs.296310 NM_002060 HPRD:08509 GJA4 CX37 gap junction protein, alpha 4, 37kDa protein-coding 13-PTNLD9-TUMOR_peak_20820 chr17 29764482 29764620 + 4.08627 NA intron (NM_032932, intron 3 of 14) intron (NM_032932, intron 3 of 14) 45909 NM_032932 84440 Hs.406788 NM_032932 HPRD:11466 RAB11FIP4 RAB11-FIP4 RAB11 family interacting protein 4 (class II) protein-coding 13-PTNLD9-TUMOR_peak_45358 chr6 54291920 54292189 + 4.08627 NA Intergenic Intergenic 118851 NM_014464 27283 Hs.127011 NM_014464 HPRD:09483 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 13-PTNLD9-TUMOR_peak_46225 chr6 147171452 147171632 + 4.08627 NA intron (NR_034115, intron 9 of 10) intron (NR_034115, intron 9 of 10) -46582 NR_003954 729176 Hs.486708 NR_003954 KATNBL1P6 - katanin p80 subunit B-like 1 pseudogene 6 pseudo 13-PTNLD9-TUMOR_peak_9158 chr11 14147167 14147331 + 4.08627 NA intron (NM_006108, intron 5 of 15) intron (NM_006108, intron 5 of 15) 163065 NM_006108 10418 Hs.643864 NM_006108 SPON1 VSGP/F-spondin|f-spondin spondin 1, extracellular matrix protein protein-coding 13-PTNLD9-TUMOR_peak_40066 chr4 188590012 188590127 + 4.08627 NA intron (NR_110436, intron 1 of 2) intron (NR_110436, intron 1 of 2) 3726 NR_110436 100506272 Hs.508163 NR_110436 ENSG00000250590 LOC100506272 - uncharacterized LOC100506272 ncRNA 13-PTNLD9-TUMOR_peak_17442 chr15 64814070 64814318 + 4.08627 NA intron (NM_015042, intron 1 of 8) intron (NM_015042, intron 1 of 8) 22575 NM_015042 23060 Hs.595451 NM_015042 HPRD:18754 ZNF609 - zinc finger protein 609 protein-coding 13-PTNLD9-TUMOR_peak_56286 chrX 102023938 102024032 + 4.08627 NA promoter-TSS (NR_038988) promoter-TSS (NR_038988) -110 NR_038988 100287765 Hs.687084 NR_038988 ENSG00000223546 LINC00630 LL0XNC01-157D4.1|LL0XNC01-237H1.2 long intergenic non-protein coding RNA 630 ncRNA 13-PTNLD9-TUMOR_peak_23751 chr19 5738535 5738730 + 4.08627 NA intron (NM_152784, intron 6 of 21) AluSz|SINE|Alu 17944 NM_152784 257062 Hs.631842 NM_152784 HPRD:17541 CATSPERD TMEM146 catsper channel auxiliary subunit delta protein-coding 13-PTNLD9-TUMOR_peak_295 chr1 8849570 8849864 + 4.08627 NA intron (NM_001042681, intron 1 of 22) intron (NM_001042681, intron 1 of 22) 27982 NM_012102 473 Hs.463041 NM_012102 HPRD:05566 RERE ARG|ARP|ATN1L|DNB1 arginine-glutamic acid dipeptide (RE) repeats protein-coding 13-PTNLD9-TUMOR_peak_27459 chr2 86105999 86106266 + 4.08627 NA intron (NM_003896, intron 1 of 6) intron (NM_003896, intron 1 of 6) 10025 NM_003896 8869 Hs.415117 NM_003896 HPRD:05098 ST3GAL5 SATI|SIAT9|SIATGM3S|ST3GalV ST3 beta-galactoside alpha-2,3-sialyltransferase 5 protein-coding 13-PTNLD9-TUMOR_peak_32486 chr21 44860816 44860910 + 4.08627 NA Intergenic Intergenic -9041 NR_026960 284836 Hs.146127 NM_194309 HPRD:10738 LINC00319 C21orf125|NCRNA00319|PRED49 long intergenic non-protein coding RNA 319 ncRNA 13-PTNLD9-TUMOR_peak_38597 chr4 75719766 75719968 + 4.08627 NA promoter-TSS (NM_001729) promoter-TSS (NM_001729) 15 NM_001729 685 Hs.710156 NM_001729 BTC - betacellulin protein-coding 13-PTNLD9-TUMOR_peak_7845 chr10 80704810 80704904 + 4.08627 NA intron (NR_015429, intron 7 of 7) intron (NR_015429, intron 7 of 7) 122348 NR_024429 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_16069 chr14 67928167 67928297 + 4.08627 NA Intergenic C-rich|Low_complexity|Low_complexity -49404 NM_016445 26499 Hs.170473 NM_016445 HPRD:12151 PLEK2 - pleckstrin 2 protein-coding 13-PTNLD9-TUMOR_peak_20420 chr17 7961134 7961334 + 4.08627 NA Intergenic HERVK-int|LTR|ERVK 18876 NM_001141 247 Hs.111256 NM_001141 HPRD:04739 ALOX15B 15-LOX-2 arachidonate 15-lipoxygenase, type B protein-coding 13-PTNLD9-TUMOR_peak_51261 chr8 87526520 87526614 + 4.08627 NA promoter-TSS (NM_003909) promoter-TSS (NM_003909) -89 NM_003909 8895 Hs.191219 NM_003909 HPRD:05016 CPNE3 CPN3|PRO1071 copine III protein-coding 13-PTNLD9-TUMOR_peak_22895 chr18 30459678 30459772 + 4.08627 NA Intergenic Intergenic -106751 NM_020805 57565 Hs.446164 NM_020805 HPRD:17238 KLHL14 - kelch-like family member 14 protein-coding 13-PTNLD9-TUMOR_peak_21187 chr17 43038129 43038321 + 4.08627 NA intron (NM_006688, intron 1 of 1) intron (NM_006688, intron 1 of 1) 7419 NM_006688 10882 Hs.134012 NM_006688 HPRD:12712 C1QL1 C1QRF|C1QTNF14|CRF complement component 1, q subcomponent-like 1 protein-coding 13-PTNLD9-TUMOR_peak_34439 chr3 46671531 46671658 + 4.08627 NA Intergenic LTR33A_|LTR|ERVL 17669 NM_001195442 100132146 Hs.679623 NM_001195442 LOC100132146 - uncharacterized LOC100132146 protein-coding 13-PTNLD9-TUMOR_peak_17991 chr15 91659716 91659810 + 4.08627 NA intron (NM_001167580, intron 1 of 11) intron (NM_001167580, intron 1 of 11) 16224 NM_014848 9899 Hs.21754 NM_014848 HPRD:11765 SV2B HsT19680 synaptic vesicle glycoprotein 2B protein-coding 13-PTNLD9-TUMOR_peak_11632 chr11 129608285 129608406 + 4.08627 NA Intergenic Intergenic -77396 NM_138788 120224 Hs.504301 NM_138788 HPRD:14020 TMEM45B - transmembrane protein 45B protein-coding 13-PTNLD9-TUMOR_peak_37863 chr4 8012488 8012582 + 4.08627 NA intron (NM_001130088, intron 12 of 13) intron (NM_001130088, intron 12 of 13) 61208 NM_001286688 84448 Hs.233404 NM_032432 ENSG00000163995 ABLIM2 - actin binding LIM protein family, member 2 protein-coding 13-PTNLD9-TUMOR_peak_17523 chr15 68878691 68878785 + 4.08627 NA intron (NM_006091, intron 1 of 11) L2c|LINE|L2 7430 NM_006091 10391 Hs.551213 NM_006091 HPRD:05416 CORO2B CLIPINC coronin, actin binding protein, 2B protein-coding 13-PTNLD9-TUMOR_peak_18463 chr16 9563477 9563667 + 4.08627 NA Intergenic Intergenic 94676 NR_106988 102465753 NR_106988 MIR7641-2 B-ATF|hsa-mir-7641-2 microRNA 7641-2 ncRNA 13-PTNLD9-TUMOR_peak_56284 chrX 101410900 101411000 + 4.08627 NA promoter-TSS (NM_001159560) promoter-TSS (NM_001159560) 36 NM_001012978 340542 Hs.47209 NM_001012978 HPRD:18484 BEX5 NGFRAP1L1 brain expressed, X-linked 5 protein-coding 13-PTNLD9-TUMOR_peak_29766 chr2 215330611 215330705 + 4.08627 NA intron (NM_001080500, intron 3 of 3) L1M1|LINE|L1 -44248 NR_047698 100885780 Hs.665982 NR_047698 VWC2L-IT1 - VWC2L intronic transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_13572 chr12 99849252 99849407 + 4.08627 NA intron (NM_152788, intron 10 of 25) L1PB1|LINE|L1 -192199 NM_153364 196472 Hs.591011 NM_153364 HPRD:17539 FAM71C - family with sequence similarity 71, member C protein-coding 13-PTNLD9-TUMOR_peak_7505 chr10 64083717 64083811 + 4.08627 NA Intergenic L1PREC2|LINE|L1 -50152 NM_199450 22891 Hs.22653 NM_014951 HPRD:06380 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 13-PTNLD9-TUMOR_peak_21692 chr17 59911104 59911198 + 4.08627 NA intron (NM_032043, intron 6 of 19) intron (NM_032043, intron 6 of 19) 29769 NM_032043 83990 Hs.128903 NM_032043 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 13-PTNLD9-TUMOR_peak_33611 chr3 5281481 5281659 + 4.08627 NA Intergenic MER117|DNA|hAT-Charlie 10370 NR_039953 100616334 NR_039953 miRBase:MI0017437 MIR4790 - microRNA 4790 ncRNA 13-PTNLD9-TUMOR_peak_47408 chr7 46318964 46319081 + 4.08627 NA Intergenic AluJo|SINE|Alu -358151 NM_001013398 3486 Hs.450230 NM_000598 HPRD:00899 IGFBP3 BP-53|IBP3 insulin-like growth factor binding protein 3 protein-coding 13-PTNLD9-TUMOR_peak_8060 chr10 97068525 97068709 + 4.08627 NA Intergenic Intergenic -17712 NM_020992 9124 Hs.368525 NM_020992 HPRD:09326 PDLIM1 CLIM1|CLP-36|CLP36|HEL-S-112|hCLIM1 PDZ and LIM domain 1 protein-coding 13-PTNLD9-TUMOR_peak_11306 chr11 115945417 115945547 + 4.08627 NA Intergenic LTR33|LTR|ERVL -314564 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 13-PTNLD9-TUMOR_peak_42220 chr5 137474967 137475136 + 4.08627 NA promoter-TSS (NM_003551) promoter-TSS (NM_003551) 81 NM_003551 8382 Hs.730856 NM_003551 HPRD:04655 NME5 NM23-H5|NM23H5|RSPH23 NME/NM23 family member 5 protein-coding 13-PTNLD9-TUMOR_peak_44010 chr6 18242713 18242889 + 4.08627 NA intron (NM_003472, intron 7 of 10) MER44C|DNA|TcMar-Tigger 21998 NM_003472 7913 Hs.484813 NM_003472 HPRD:00503 DEK D6S231E DEK proto-oncogene protein-coding 13-PTNLD9-TUMOR_peak_22462 chr18 3281580 3281674 + 4.08627 NA Intergenic Intergenic 18910 NM_001144945 103910 Hs.190086 NM_033546 HPRD:10095 MYL12B MLC-B|MRLC2 myosin, light chain 12B, regulatory protein-coding 13-PTNLD9-TUMOR_peak_51162 chr8 74985544 74985681 + 4.08627 NA Intergenic MIRc|SINE|MIR 82048 NM_001195797 23643 Hs.726603 NM_015364 HPRD:05579 LY96 ESOP-1|MD-2|MD2|ly-96 lymphocyte antigen 96 protein-coding 13-PTNLD9-TUMOR_peak_30077 chr2 235732652 235732801 + 4.08627 NA Intergenic Intergenic -127902 NM_014521 23677 Hs.516777 NM_014521 HPRD:09285 SH3BP4 BOG25|TTP SH3-domain binding protein 4 protein-coding 13-PTNLD9-TUMOR_peak_27134 chr2 67067204 67067365 + 4.08627 NA Intergenic Intergenic -64284 NR_110169 101060019 Hs.116425 NR_110169 LOC101060019 - uncharacterized LOC101060019 ncRNA 13-PTNLD9-TUMOR_peak_34972 chr3 72728153 72728256 + 4.08627 NA Intergenic Intergenic 169394 NM_018130 55164 Hs.606584 NM_018130 HPRD:07682 SHQ1 Shq1p SHQ1, H/ACA ribonucleoprotein assembly factor protein-coding 13-PTNLD9-TUMOR_peak_54233 chr9 102790570 102790673 + 4.08627 NA intron (NM_015051, intron 4 of 11) intron (NM_015051, intron 4 of 11) 70709 NM_015051 23071 Hs.154023 NM_015051 HPRD:10290 ERP44 PDIA10|TXNDC4 endoplasmic reticulum protein 44 protein-coding 13-PTNLD9-TUMOR_peak_21761 chr17 62308265 62308411 + 4.08627 NA promoter-TSS (NM_001288733) promoter-TSS (NM_001288733) -222 NM_001288733 55852 Hs.175414 NM_018469 HPRD:13716 TEX2 HT008|TMEM96 testis expressed 2 protein-coding 13-PTNLD9-TUMOR_peak_43068 chr5 172910763 172910958 + 4.08627 NA Intergenic Intergenic -95777 NR_027108 285593 Hs.409730 NR_027108 ENSG00000253955 LOC285593 - uncharacterized LOC285593 ncRNA 13-PTNLD9-TUMOR_peak_6204 chr1 248100752 248100926 + 4.08627 NA intron (NM_175911, intron 1 of 2) intron (NM_175911, intron 1 of 2) 346 NM_175911 284521 Hs.372936 NM_175911 HPRD:17702 OR2L13 OR2L14 olfactory receptor, family 2, subfamily L, member 13 protein-coding 13-PTNLD9-TUMOR_peak_32009 chr21 22582957 22583130 + 4.08627 NA intron (NM_004540, intron 1 of 17) intron (NM_004540, intron 1 of 17) -74779 NR_046937 100873771 NR_046937 ENSG00000222791 RNU6-67P RNU6-67 RNA, U6 small nuclear 67, pseudogene snRNA 13-PTNLD9-TUMOR_peak_10700 chr11 76631074 76631168 + 4.08627 NA intron (NM_001300953, intron 1 of 9) LTR41|LTR|ERVL 59204 NM_001300955 55331 Hs.23862 NM_018367 ACER3 APHC|PHCA alkaline ceramidase 3 protein-coding 13-PTNLD9-TUMOR_peak_46370 chr6 155492403 155492497 + 4.08627 NA intron (NM_012454, intron 8 of 25) intron (NM_012454, intron 8 of 25) -45647 NM_001010927 26230 Hs.586279 NM_012454 HPRD:05273 TIAM2 STEF|TIAM-2 T-cell lymphoma invasion and metastasis 2 protein-coding 13-PTNLD9-TUMOR_peak_45260 chr6 49635997 49636188 + 4.08627 NA Intergenic Intergenic -31505 NM_000324 6005 Hs.120950 NM_000324 HPRD:01582 RHAG CD241|RH2|RH50A|Rh50|Rh50GP|SLC42A1 Rh-associated glycoprotein protein-coding 13-PTNLD9-TUMOR_peak_31249 chr20 45149774 45149868 + 4.08627 NA Intergenic Intergenic -7623 NM_018102 55713 Hs.147041 NM_018102 HPRD:15777 ZNF334 - zinc finger protein 334 protein-coding 13-PTNLD9-TUMOR_peak_28703 chr2 150670790 150670884 + 4.08627 NA intron (NR_110240, intron 2 of 2) L2c|LINE|L2 -226507 NM_015702 27249 Hs.5324 NM_015702 HPRD:10781 MMADHC C2orf25|CL25022|cblD methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria protein-coding 13-PTNLD9-TUMOR_peak_41859 chr5 121488975 121489101 + 4.08627 NA 3' UTR (NM_207317, exon 2 of 2) 3' UTR (NM_207317, exon 2 of 2) -6833 NM_001195535 100505841 Hs.733368 NM_001195535 LOC100505841 - zinc finger protein 474-like protein-coding 13-PTNLD9-TUMOR_peak_33215 chr22 37440217 37440372 + 4.08627 NA Intergenic Intergenic -7482 NM_024681 79734 Hs.517597 NM_024681 HPRD:07764 KCTD17 - potassium channel tetramerization domain containing 17 protein-coding 13-PTNLD9-TUMOR_peak_55808 chrX 47863383 47863537 + 4.08627 NA promoter-TSS (NM_001178099) promoter-TSS (NM_001178099) -66 NM_001178099 7569 Hs.189690 NM_006962 HPRD:11781 ZNF182 HHZ150|KOX14|ZNF21|Zfp182 zinc finger protein 182 protein-coding 13-PTNLD9-TUMOR_peak_42710 chr5 151784838 151784932 + 4.08627 NA promoter-TSS (NM_020167) promoter-TSS (NM_020167) -45 NM_020167 56923 Hs.731911 NM_020167 HPRD:12003 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 13-PTNLD9-TUMOR_peak_56587 chrX 148720663 148720773 + 4.08627 NA Intergenic Intergenic -7150 NM_032508 84548 Hs.522172 NM_032508 HPRD:06504 TMEM185A CXorf13|FAM11A|FRAXF|ee3 transmembrane protein 185A protein-coding 13-PTNLD9-TUMOR_peak_40830 chr5 50641055 50641184 + 4.08627 NA Intergenic MLT1G3|LTR|ERVL-MaLR -37839 NM_002202 3670 Hs.505 NM_002202 HPRD:02650 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_10298 chr11 66221793 66221992 + 4.08627 NA Intergenic Intergenic -11906 NM_001243135 246330 Hs.656875 NM_145065 HPRD:17535 PELI3 - pellino E3 ubiquitin protein ligase family member 3 protein-coding 13-PTNLD9-TUMOR_peak_23809 chr19 7633406 7633500 + 4.08627 NA Intergenic Intergenic -27335 NM_020902 57662 Hs.17686 NM_020902 ENSG00000076826 CAMSAP3 KIAA1543|NEZHA|PPP1R80 calmodulin regulated spectrin-associated protein family, member 3 protein-coding 13-PTNLD9-TUMOR_peak_46564 chr6 169042261 169042355 + 4.08627 NA intron (NM_022138, intron 9 of 12) intron (NM_022138, intron 9 of 12) 200477 NM_001166412 64094 Hs.487200 NM_022138 HPRD:06244 SMOC2 DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1 SPARC related modular calcium binding 2 protein-coding 13-PTNLD9-TUMOR_peak_48875 chr7 117313574 117313720 + 4.08627 NA Intergenic LTR1D|LTR|ERV1 193630 NM_000492 1080 Hs.489786 NM_000492 HPRD:03883 CFTR ABC35|ABCC7|CF|CFTR/MRP|MRP7|TNR-CFTR|dJ760C5.1 cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7) protein-coding 13-PTNLD9-TUMOR_peak_382 chr1 10782938 10783135 + 4.08627 NA intron (NM_017766, intron 2 of 15) intron (NM_017766, intron 2 of 15) 73697 NM_001079843 54897 Hs.439894 NM_017766 HPRD:07897 CASZ1 CAS11|CST|SRG|ZNF693|dJ734G22.1 castor zinc finger 1 protein-coding 13-PTNLD9-TUMOR_peak_16974 chr15 33265046 33265140 + 4.08627 NA intron (NM_001277313, intron 7 of 20) L2c|LINE|L2 95140 NM_001103184 342184 Hs.657649 NM_198500 HPRD:07031 FMN1 FMN|LD formin 1 protein-coding 13-PTNLD9-TUMOR_peak_29949 chr2 228018133 228018227 + 4.08627 NA intron (NM_000092, intron 1 of 47) intron (NM_000092, intron 1 of 47) 11095 NM_000092 1286 Hs.591645 NM_000092 HPRD:00360 COL4A4 CA44 collagen, type IV, alpha 4 protein-coding 13-PTNLD9-TUMOR_peak_39934 chr4 183229102 183229278 + 4.08627 NA Intergenic Intergenic -15947 NM_001080477 55714 Hs.130438 NM_001080477 ENSG00000218336 TENM3 MCOPCB9|ODZ3|TNM3|Ten-m3 teneurin transmembrane protein 3 protein-coding 13-PTNLD9-TUMOR_peak_19743 chr16 73863800 73863894 + 4.08627 NA Intergenic L1PA2|LINE|L1 385573 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 13-PTNLD9-TUMOR_peak_52539 chr8 145806268 145806386 + 4.08627 NA exon (NM_025251, exon 4 of 13) exon (NM_025251, exon 4 of 13) 32561 NM_025251 80728 Hs.148988 NM_025251 HPRD:17224 ARHGAP39 CrGAP|Vilse Rho GTPase activating protein 39 protein-coding 13-PTNLD9-TUMOR_peak_11408 chr11 119461481 119461729 + 4.08627 NA Intergenic MER21C|LTR|ERVL 137830 NM_203286 5818 Hs.334846 NM_002855 HPRD:07200 PVRL1 CD111|CLPED1|ED4|HIgR|HV1S|HVEC|OFC7|PRR|PRR1|PVRR|PVRR1|SK-12|nectin-1 poliovirus receptor-related 1 (herpesvirus entry mediator C) protein-coding 13-PTNLD9-TUMOR_peak_38892 chr4 91649239 91649333 + 4.08627 NA intron (NM_001145065, intron 7 of 10) intron (NM_001145065, intron 7 of 10) 493104 NM_207491 401145 Hs.654735 NM_207491 HPRD:17561 CCSER1 FAM190A coiled-coil serine-rich protein 1 protein-coding 13-PTNLD9-TUMOR_peak_43889 chr6 14401532 14401660 + 4.08627 NA Intergenic Intergenic -115911 NR_108096 102216342 Hs.563409 NR_108096 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 13-PTNLD9-TUMOR_peak_11256 chr11 113489202 113489313 + 4.08627 NA Intergenic MIRb|SINE|MIR 87838 NR_110047 80975 Hs.46720 NM_030770 HPRD:05995 TMPRSS5 SPINESIN transmembrane protease, serine 5 protein-coding 13-PTNLD9-TUMOR_peak_48318 chr7 92463245 92463351 + 4.08627 NA promoter-TSS (NM_001259) promoter-TSS (NM_001259) -67 NM_001259 1021 Hs.119882 NM_001259 HPRD:04533 CDK6 PLSTIRE cyclin-dependent kinase 6 protein-coding 13-PTNLD9-TUMOR_peak_13337 chr12 72113854 72114023 + 4.08627 NA Intergenic MER5B|DNA|hAT-Charlie 34060 NM_018279 55266 Hs.644802 NM_018279 HPRD:15530 TMEM19 - transmembrane protein 19 protein-coding 13-PTNLD9-TUMOR_peak_56659 chrX 152474793 152474931 + 4.08627 NA Intergenic ERVL-B4-int|LTR|ERVL 11254 NM_004988 4100 Hs.72879 NM_004988 HPRD:02059 MAGEA1 CT1.1|MAGE1 melanoma antigen family A, 1 (directs expression of antigen MZ2-E) protein-coding 13-PTNLD9-TUMOR_peak_6874 chr10 32266889 32267013 + 4.08627 NA Intergenic CR1_Mam|LINE|CR1 -49147 NM_001270698 94134 Hs.499264 NM_018287 HPRD:06446 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 13-PTNLD9-TUMOR_peak_55933 chrX 56972822 56972916 + 4.08627 NA Intergenic HERVK11-int|LTR|ERVK 49119 NR_027139 169981 Hs.522672 NM_001010862 SPIN3 SPIN-3|bA445O16.1 spindlin family, member 3 protein-coding 13-PTNLD9-TUMOR_peak_42147 chr5 134421455 134421549 + 4.08627 NA intron (NM_001277348, intron 2 of 5) intron (NM_001277348, intron 2 of 5) -45765 NR_105050 101927953 Hs.436898 NR_105049 ENSG00000249082 C5orf66-AS1 CTC-276P9.1 C5orf66 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_38484 chr4 58772200 58772379 + 4.08627 NA Intergenic Intergenic -795738 NM_001253835 3490 Hs.479808 NM_001553 HPRD:04183 IGFBP7 AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF insulin-like growth factor binding protein 7 protein-coding 13-PTNLD9-TUMOR_peak_54361 chr9 110547027 110547159 + 4.08627 NA Intergenic Intergenic -295046 NM_004235 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel-like factor 4 (gut) protein-coding 13-PTNLD9-TUMOR_peak_17685 chr15 75660917 75661059 + 4.08627 NA promoter-TSS (NM_001256496) promoter-TSS (NM_001256496) -20 NM_006715 4123 Hs.26232 NM_006715 HPRD:01109 MAN2C1 MAN6A8|MANA|MANA1 mannosidase, alpha, class 2C, member 1 protein-coding 13-PTNLD9-TUMOR_peak_43898 chr6 14758722 14758838 + 4.08627 NA Intergenic Intergenic -473095 NR_108096 102216342 Hs.563409 NR_108096 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 13-PTNLD9-TUMOR_peak_10768 chr11 79814707 79814816 + 4.08627 NA Intergenic Intergenic 659085 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LOC101928944 - uncharacterized LOC101928944 ncRNA 13-PTNLD9-TUMOR_peak_11269 chr11 113888501 113888742 + 4.08627 NA Intergenic L2|LINE|L2 40399 NM_001161772 3359 Hs.413899 NM_000869 HPRD:08917 HTR3A 5-HT-3|5-HT3A|5-HT3R|5HT3R|HTR3 5-hydroxytryptamine (serotonin) receptor 3A, ionotropic protein-coding 13-PTNLD9-TUMOR_peak_31518 chr20 51026789 51026916 + 4.08627 NA Intergenic Intergenic -210525 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 13-PTNLD9-TUMOR_peak_44042 chr6 19819285 19819396 + 4.08627 NA Intergenic L2c|LINE|L2 -18261 NM_001546 3400 Hs.519601 NM_001546 ID4 IDB4|bHLHb27 inhibitor of DNA binding 4, dominant negative helix-loop-helix protein protein-coding 13-PTNLD9-TUMOR_peak_2992 chr1 116746074 116746253 + 4.08627 NA Intergenic Intergenic 91787 NM_152367 126868 Hs.376194 NM_152367 HPRD:08245 MAB21L3 C1orf161 mab-21-like 3 (C. elegans) protein-coding 13-PTNLD9-TUMOR_peak_8104 chr10 99172730 99172829 + 4.08627 NA Intergenic L2c|LINE|L2 -11652 NM_001145114 23223 Hs.434251 NM_015179 HPRD:11103 RRP12 KIAA0690 ribosomal RNA processing 12 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_5773 chr1 229760725 229760959 + 4.08627 NA intron (NM_014409, intron 1 of 4) intron (NM_014409, intron 1 of 4) 952 NM_001025247 27097 Hs.270621 NM_014409 HPRD:11619 TAF5L PAF65B TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa protein-coding 13-PTNLD9-TUMOR_peak_41638 chr5 102201478 102201572 + 4.08627 NA promoter-TSS (NM_000919) promoter-TSS (NM_000919) -2 NR_033440 5066 Hs.369430 NM_000919 HPRD:01361 PAM PAL|PHM peptidylglycine alpha-amidating monooxygenase protein-coding 13-PTNLD9-TUMOR_peak_10487 chr11 70454895 70455049 + 4.08627 NA intron (NR_110766, intron 2 of 8) intron (NR_110766, intron 2 of 8) -22227 NR_046567 100874198 Hs.656610 NR_046567 ENSG00000226627 SHANK2-AS1 - SHANK2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_49339 chr7 139167786 139168043 + 4.08627 NA exon (NM_198508, exon 1 of 5) exon (NM_198508, exon 1 of 5) 543 NM_198508 346689 Hs.17572 NM_198508 KLRG2 CLEC15B killer cell lectin-like receptor subfamily G, member 2 protein-coding 13-PTNLD9-TUMOR_peak_56225 chrX 86664653 86664816 + 4.08627 NA Intergenic LTR25|LTR|ERV1 -107981 NM_019117 56062 Hs.49075 NM_019117 HPRD:02283 KLHL4 DKELCHL|KHL4 kelch-like family member 4 protein-coding 13-PTNLD9-TUMOR_peak_8492 chr10 123427837 123428058 + 4.08627 NA Intergenic Intergenic -69975 NR_073009 2263 Hs.533683 NM_000141 HPRD:01492 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 13-PTNLD9-TUMOR_peak_15000 chr13 99698518 99698680 + 4.08627 NA intron (NM_015296, intron 1 of 55) intron (NM_015296, intron 1 of 55) 40061 NM_001130049 23348 Hs.596105 NM_015296 HPRD:09542 DOCK9 ZIZ1|ZIZIMIN1 dedicator of cytokinesis 9 protein-coding 13-PTNLD9-TUMOR_peak_6523 chr10 13599100 13599223 + 4.08627 NA Intergenic Intergenic -29778 NM_003675 8559 Hs.729158 NM_003675 HPRD:05407 PRPF18 PRP18|hPrp18 pre-mRNA processing factor 18 protein-coding 13-PTNLD9-TUMOR_peak_34810 chr3 62070291 62070410 + 4.08627 NA intron (NM_002841, intron 5 of 29) intron (NM_002841, intron 5 of 29) 234272 NR_038281 100506994 Hs.656620 NR_038281 ENSG00000241472 PTPRG-AS1 - PTPRG antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_55683 chrX 30045917 30046011 + 4.08627 NA Intergenic L1MEc|LINE|L1 -187711 NM_002364 4113 Hs.113824 NM_002364 HPRD:02109 MAGEB2 CT3.2|DAM6|MAGE-XP-2 melanoma antigen family B, 2 protein-coding 13-PTNLD9-TUMOR_peak_16309 chr14 76618799 76618893 + 4.08627 NA intron (NM_017926, intron 1 of 9) intron (NM_017926, intron 1 of 9) 618 NM_017926 55668 Hs.410231 NM_017926 HPRD:16594 GPATCH2L C14orf118 G patch domain containing 2-like protein-coding 13-PTNLD9-TUMOR_peak_54708 chr9 125261392 125261574 + 4.08627 NA Intergenic L1PA15-16|LINE|L1 -11598 NM_054107 26740 Hs.460145 NM_054107 HPRD:14917 OR1J2 HG152|HSA5|OR1J3|OR1J5|OR9-19|OST044 olfactory receptor, family 1, subfamily J, member 2 protein-coding 13-PTNLD9-TUMOR_peak_54581 chr9 118858480 118858623 + 4.08627 NA Intergenic Intergenic -57520 NM_002581 5069 Hs.643599 NM_002581 HPRD:01448 PAPPA ASBABP2|DIPLA1|IGFBP-4ase|PAPA|PAPP-A|PAPPA1 pregnancy-associated plasma protein A, pappalysin 1 protein-coding 13-PTNLD9-TUMOR_peak_55620 chrX 20158329 20158463 + 4.08627 NA intron (NR_046592, intron 1 of 1) L2c|LINE|L2 310 NR_046592 100874078 Hs.603723 NR_046592 EIF1AX-AS1 - EIF1AX antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_56422 chrX 119591819 119591913 + 4.08627 NA intron (NM_001122606, intron 1 of 8) intron (NM_001122606, intron 1 of 8) 11338 NM_002294 3920 Hs.496684 NM_002294 HPRD:02396 LAMP2 CD107b|LAMP-2|LAMPB|LGP110 lysosomal-associated membrane protein 2 protein-coding 13-PTNLD9-TUMOR_peak_53925 chr9 91495376 91495493 + 4.08627 NA Intergenic Intergenic -110344 NM_001001938 286223 Hs.585118 NM_001001938 HPRD:12962 C9orf47 C9orf108|bA791O21.3 chromosome 9 open reading frame 47 protein-coding 13-PTNLD9-TUMOR_peak_55004 chr9 137348226 137348519 + 4.08627 NA Intergenic Intergenic 49944 NM_001291921 6256 Hs.590886 NM_002957 RXRA NR2B1 retinoid X receptor, alpha protein-coding 13-PTNLD9-TUMOR_peak_8013 chr10 93358470 93358606 + 4.08627 NA intron (NR_024467, intron 1 of 4) intron (NR_024467, intron 1 of 4) 12679 NR_024467 100188947 Hs.535293 NR_024467 HECTD2-AS1 - HECTD2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_40527 chr5 31929469 31929563 + 4.08627 NA intron (NM_178140, intron 1 of 23) MER20|DNA|hAT-Charlie 6749 NR_036241 100422874 NR_036241 miRBase:MI0015887 MIR4279 - microRNA 4279 ncRNA 13-PTNLD9-TUMOR_peak_718 chr1 24842217 24842357 + 4.08627 NA intron (NM_001251985, intron 1 of 1) intron (NM_001251985, intron 1 of 1) 1483 NM_001251980 11123 Hs.656799 NM_013441 HPRD:05792 RCAN3 DSCR1L2|MCIP3|RCN3|hRCN3 RCAN family member 3 protein-coding 13-PTNLD9-TUMOR_peak_47250 chr7 37611551 37611712 + 4.08627 NA Intergenic Intergenic -122702 NM_001206480 9844 Hs.434989 NM_014800 HPRD:12102 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 13-PTNLD9-TUMOR_peak_21239 chr17 43717868 43717962 + 4.08627 NA non-coding (NR_026905, exon 2 of 2) non-coding (NR_026905, exon 2 of 2) 1574 NR_026905 147081 Hs.128813 NM_152466 HPRD:08052 CRHR1-IT1 C17orf69 CRHR1 intronic transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_26262 chr2 20306649 20306743 + 4.08627 NA Intergenic LTR12D|LTR|ERV1 -54907 NM_014713 9741 Hs.467807 NM_014713 HPRD:13959 LAPTM4A HUMORF13|LAPTM4|MBNT|Mtrp lysosomal protein transmembrane 4 alpha protein-coding 13-PTNLD9-TUMOR_peak_52619 chr9 1760069 1760219 + 4.08627 NA Intergenic Intergenic -255075 NM_003070 6595 Hs.298990 NM_003070 HPRD:02483 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 13-PTNLD9-TUMOR_peak_26468 chr2 29711174 29711326 + 4.08627 NA intron (NM_004304, intron 4 of 28) intron (NM_004304, intron 4 of 28) 372958 NM_024692 79745 Hs.122927 NM_024692 HPRD:08634 CLIP4 RSNL2 CAP-GLY domain containing linker protein family, member 4 protein-coding 13-PTNLD9-TUMOR_peak_55734 chrX 40280186 40280347 + 4.08627 NA Intergenic MLT1H|LTR|ERVL-MaLR 158096 NR_110386 101927476 Hs.522607 NR_110386 ENSG00000236393 LOC101927476 - uncharacterized LOC101927476 ncRNA 13-PTNLD9-TUMOR_peak_5598 chr1 225110366 225110513 + 4.08627 NA Intergenic LTR41B|LTR|ERVL -6917 NM_001145154 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein, axonemal, heavy chain 14 protein-coding 13-PTNLD9-TUMOR_peak_35502 chr3 119617909 119618003 + 4.08627 NA intron (NM_001146156, intron 7 of 10) MER44D|DNA|TcMar-Tigger 116399 NM_022002 8856 Hs.7303 NM_003889 HPRD:04346 NR1I2 BXR|ONR1|PAR|PAR1|PAR2|PARq|PRR|PXR|SAR|SXR nuclear receptor subfamily 1, group I, member 2 protein-coding 13-PTNLD9-TUMOR_peak_30172 chr2 240868549 240868744 + 4.08627 NA Intergenic Intergenic 13865 NR_039949 100616417 NR_039949 miRBase:MI0017433 MIR4786 - microRNA 4786 ncRNA 13-PTNLD9-TUMOR_peak_17704 chr15 76349387 76349510 + 4.08627 NA Intergenic Intergenic -2851 NM_152335 123591 Hs.661411 NM_152335 HPRD:08235 C15orf27 - chromosome 15 open reading frame 27 protein-coding 13-PTNLD9-TUMOR_peak_8061 chr10 97106811 97106977 + 4.08627 NA intron (NM_006434, intron 14 of 20) intron (NM_006434, intron 14 of 20) -55989 NM_020992 9124 Hs.368525 NM_020992 HPRD:09326 PDLIM1 CLIM1|CLP-36|CLP36|HEL-S-112|hCLIM1 PDZ and LIM domain 1 protein-coding 13-PTNLD9-TUMOR_peak_21240 chr17 43782898 43783022 + 4.08627 NA intron (NM_001256299, intron 3 of 14) intron (NM_001256299, intron 3 of 14) 66619 NR_026905 147081 Hs.128813 NM_152466 HPRD:08052 CRHR1-IT1 C17orf69 CRHR1 intronic transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_16437 chr14 91224862 91225026 + 4.08627 NA intron (NM_001010854, intron 3 of 19) CpG 57817 NM_001010854 145567 Hs.655697 NM_001010854 HPRD:18503 TTC7B TTC7L1|c14_5685 tetratricopeptide repeat domain 7B protein-coding 13-PTNLD9-TUMOR_peak_48858 chr7 116152210 116152304 + 4.08627 NA Intergenic Intergenic 12159 NM_001206748 858 Hs.212332 NM_001233 HPRD:03029 CAV2 CAV caveolin 2 protein-coding 13-PTNLD9-TUMOR_peak_26150 chr2 12054653 12054792 + 4.08627 NA Intergenic MIRb|SINE|MIR -77610 NR_036226 100422996 NR_036226 miRBase:MI0015872 MIR4262 - microRNA 4262 ncRNA 13-PTNLD9-TUMOR_peak_56149 chrX 73602522 73602680 + 4.08627 NA Intergenic Intergenic -38727 NM_006517 6567 Hs.75317 NM_006517 HPRD:02106 SLC16A2 AHDS|DXS128|DXS128E|MCT 7|MCT 8|MCT7|MCT8|MRX22|XPCT solute carrier family 16, member 2 (thyroid hormone transporter) protein-coding 13-PTNLD9-TUMOR_peak_2712 chr1 108384882 108385035 + 4.08627 NA intron (NM_006113, intron 2 of 26) MLT1M|LTR|ERVL-MaLR -54887 NR_107006 102465839 NR_107006 MIR7852 hsa-mir-7852 microRNA 7852 ncRNA 13-PTNLD9-TUMOR_peak_14298 chr12 129246210 129246313 + 4.08627 NA Intergenic MLT1L|LTR|ERVL-MaLR 62280 NM_145648 121260 Hs.507260 NM_145648 ENSG00000139370 SLC15A4 PHT1|PTR4 solute carrier family 15 (oligopeptide transporter), member 4 protein-coding 13-PTNLD9-TUMOR_peak_38078 chr4 21804191 21804300 + 4.08627 NA intron (NM_147182, intron 1 of 8) intron (NM_147182, intron 1 of 8) 50566 NR_002813 359822 Hs.354058 NR_002813 KCNIP4-IT1 NCRNA00099|UM9(5)|UM9-5 KCNIP4 intronic transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_20811 chr17 29233242 29233348 + 4.08627 NA promoter-TSS (NM_024683) promoter-TSS (NM_024683) -9 NM_024683 79736 Hs.317340 NM_024683 TEFM C17orf42 transcription elongation factor, mitochondrial protein-coding 13-PTNLD9-TUMOR_peak_39018 chr4 106899943 106900157 + 4.08627 NA Intergenic Intergenic 83453 NM_001184690 255743 Hs.518921 NM_198278 HPRD:14141 NPNT EGFL6L|POEM nephronectin protein-coding 13-PTNLD9-TUMOR_peak_14464 chr13 27412208 27412338 + 4.08627 NA Intergenic Intergenic -77351 NM_005288 2835 Hs.123034 NM_005288 HPRD:15978 GPR12 GPCR12|GPCR21|PPP1R84 G protein-coupled receptor 12 protein-coding 13-PTNLD9-TUMOR_peak_25582 chr19 53538766 53538860 + 4.08627 NA Intergenic MER50|LTR|ERV1 -9178 NM_001191055 100271846 Hs.420445 NM_001191055 ENSG00000268964 ERVV-2 ENVV2|HERV-V2 endogenous retrovirus group V, member 2 protein-coding 13-PTNLD9-TUMOR_peak_42954 chr5 169646819 169646960 + 4.08627 NA Intergenic L2a|LINE|L2 -13061 NM_001102609 133874 Hs.519749 NM_001102609 ENSG00000234511 C5orf58 - chromosome 5 open reading frame 58 protein-coding 13-PTNLD9-TUMOR_peak_52148 chr8 134012444 134012638 + 4.08627 NA intron (NM_003235, intron 35 of 47) Charlie17a|DNA|hAT-Charlie 46285 NR_107002 102466865 NR_107002 MIR7848 hsa-mir-7848 microRNA 7848 ncRNA 13-PTNLD9-TUMOR_peak_8620 chr10 130991147 130991241 + 4.08627 NA Intergenic Intergenic -274260 NM_002412 4255 Hs.501522 NM_002412 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 13-PTNLD9-TUMOR_peak_17852 chr15 84167279 84167422 + 4.08627 NA intron (NM_001301109, intron 4 of 11) L2|LINE|L2 51259 NR_026799 6457 Hs.270055 NM_003027 HPRD:04528 SH3GL3 CNSA3|EEN-B2|HsT19371|SH3D2C|SH3P13 SH3-domain GRB2-like 3 protein-coding 13-PTNLD9-TUMOR_peak_46042 chr6 128890980 128891119 + 4.08627 NA Intergenic L2a|LINE|L2 -49230 NM_001291984 5796 Hs.155919 NM_002844 HPRD:03968 PTPRK R-PTP-kappa protein tyrosine phosphatase, receptor type, K protein-coding 13-PTNLD9-TUMOR_peak_56270 chrX 99899104 99899198 + 4.08627 NA promoter-TSS (NM_014467) promoter-TSS (NM_014467) -12 NM_014467 27286 Hs.306339 NM_014467 HPRD:06726 SRPX2 BPP|CBPS|PMGX|RESDX|SRPUL sushi-repeat containing protein, X-linked 2 protein-coding 13-PTNLD9-TUMOR_peak_30378 chr20 8674485 8674640 + 4.08627 NA intron (NM_015192, intron 10 of 31) intron (NM_015192, intron 10 of 31) -375139 NM_001172646 5332 Hs.472101 NM_000933 HPRD:02885 PLCB4 ARCND2|PI-PLC phospholipase C, beta 4 protein-coding 13-PTNLD9-TUMOR_peak_40451 chr5 17203578 17203687 + 4.08627 NA intron (NR_027253, intron 1 of 2) intron (NR_027253, intron 1 of 2) -13300 NM_001271606 10409 Hs.201641 NM_006317 HPRD:08389 BASP1 CAP-23|CAP23|NAP-22|NAP22 brain abundant, membrane attached signal protein 1 protein-coding 13-PTNLD9-TUMOR_peak_20850 chr17 31562383 31562479 + 4.08627 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 57575 NM_183377 40 Hs.368417 NM_001094 HPRD:03471 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid-sensing (proton-gated) ion channel 2 protein-coding 13-PTNLD9-TUMOR_peak_19418 chr16 56735959 56736145 + 4.08627 NA Intergenic Intergenic 19670 NM_005952 4501 Hs.374950 NM_005952 HPRD:01130 MT1X MT-1l|MT1 metallothionein 1X protein-coding 13-PTNLD9-TUMOR_peak_46297 chr6 150814235 150814329 + 4.08627 NA Intergenic Intergenic -106717 NM_001029884 57480 Hs.189781 NM_001029884 ENSG00000120278 PLEKHG1 ARHGEF41 pleckstrin homology domain containing, family G (with RhoGef domain) member 1 protein-coding 13-PTNLD9-TUMOR_peak_30418 chr20 11071550 11071668 + 4.08627 NA Intergenic Intergenic -181689 NR_109866 101929413 Hs.385604 NR_109866 ENSG00000232900 LOC101929413 - uncharacterized LOC101929413 ncRNA 13-PTNLD9-TUMOR_peak_42294 chr5 139283428 139283743 + 4.08627 NA intron (NM_001184935, intron 1 of 7) CpG 108179 NM_032289 84249 Hs.21963 NM_032289 HPRD:15190 PSD2 - pleckstrin and Sec7 domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_14324 chr12 131719231 131719427 + 4.08627 NA Intergenic Intergenic 69773 NR_026670 116437 Hs.675497 NR_026670 ENSG00000204603 LINC01257 - long intergenic non-protein coding RNA 1257 ncRNA 13-PTNLD9-TUMOR_peak_27021 chr2 61964221 61964341 + 4.08627 NA Intergenic Intergenic 116997 NR_037710 84140 Hs.440466 NM_032180 ENSG00000170264 FAM161A RP28 family with sequence similarity 161, member A protein-coding 13-PTNLD9-TUMOR_peak_21030 chr17 39092968 39093071 + 4.08627 NA 5' UTR (NM_015515, exon 2 of 9) 5' UTR (NM_015515, exon 2 of 9) 876 NM_001282433 25984 Hs.9029 NM_015515 HPRD:05863 KRT23 CK23|HAIK1|K23 keratin 23 (histone deacetylase inducible) protein-coding 13-PTNLD9-TUMOR_peak_231 chr1 7386631 7386725 + 4.08627 NA intron (NM_015215, intron 5 of 22) MLT1C|LTR|ERVL-MaLR -444651 NM_004781 9341 Hs.66708 NM_004781 HPRD:04711 VAMP3 CEB vesicle-associated membrane protein 3 protein-coding 13-PTNLD9-TUMOR_peak_17916 chr15 87449904 87450010 + 4.08627 NA intron (NM_152336, intron 22 of 23) intron (NM_152336, intron 22 of 23) -589758 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_6677 chr10 23701230 23701351 + 4.08627 NA Intergenic Intergenic -26908 NM_001145373 220213 Hs.499042 NM_001145373 ENSG00000165312 OTUD1 DUBA7|OTDC1 OTU deubiquitinase 1 protein-coding 13-PTNLD9-TUMOR_peak_28413 chr2 129845167 129845278 + 4.08627 NA Intergenic Intergenic 186242 NR_122041 151121 Hs.531687 NM_001033657 ENSG00000204460 LOC151121 - uncharacterized LOC151121 ncRNA 13-PTNLD9-TUMOR_peak_13740 chr12 108752489 108752670 + 4.08627 NA Intergenic Intergenic -19485 NM_001142343 1240 Hs.197143 NM_004072 HPRD:03829 CMKLR1 CHEMERINR|ChemR23|DEZ|RVER1 chemokine-like receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_45645 chr6 86131724 86131968 + 4.08627 NA Intergenic Intergenic -27456 NM_001204813 4907 Hs.153952 NM_002526 HPRD:00552 NT5E CALJA|CD73|E5NT|NT|NT5|NTE|eN|eNT 5'-nucleotidase, ecto (CD73) protein-coding 13-PTNLD9-TUMOR_peak_575 chr1 18945198 18945292 + 4.08627 NA Intergenic L1ME4a|LINE|L1 -12255 NM_013945 5081 Hs.113253 NM_002584 HPRD:01331 PAX7 HUP1|PAX7B|RMS2 paired box 7 protein-coding 13-PTNLD9-TUMOR_peak_38975 chr4 103184255 103184359 + 4.08627 NA exon (NM_001135146, exon 9 of 9) exon (NM_001135146, exon 9 of 9) 61162 NM_001135148 64116 Hs.288034 NM_022154 HPRD:12286 SLC39A8 BIGM103|LZT-Hs6|ZIP8 solute carrier family 39 (zinc transporter), member 8 protein-coding 13-PTNLD9-TUMOR_peak_38587 chr4 75073577 75073671 + 4.08627 NA intron (NM_001144978, intron 5 of 7) intron (NM_001144978, intron 5 of 7) 49795 NM_001144978 441024 Hs.721011 NM_001004346 HPRD:17608 MTHFD2L - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like protein-coding 13-PTNLD9-TUMOR_peak_15656 chr14 47618660 47618815 + 4.08627 NA intron (NR_103766, intron 3 of 8) HERV16-int|LTR|ERVL 193712 NM_182830 161357 Hs.436380 NM_182830 HPRD:14352 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 13-PTNLD9-TUMOR_peak_9628 chr11 44438469 44438563 + 4.08627 NA Intergenic Intergenic -106800 NM_021926 60529 Hs.436055 NM_021926 HPRD:05661 ALX4 CRS5|FND2 ALX homeobox 4 protein-coding 13-PTNLD9-TUMOR_peak_589 chr1 19756241 19756393 + 4.08627 NA intron (NM_001206540, intron 1 of 9) intron (NM_001206540, intron 1 of 9) 54884 NM_001282162 832 Hs.432760 NM_004930 HPRD:11872 CAPZB CAPB|CAPPB|CAPZ capping protein (actin filament) muscle Z-line, beta protein-coding 13-PTNLD9-TUMOR_peak_40488 chr5 23007593 23007687 + 4.08627 NA Intergenic Intergenic -153909 NM_004061 1010 Hs.113684 NM_004061 HPRD:11081 CDH12 CDHB cadherin 12, type 2 (N-cadherin 2) protein-coding 13-PTNLD9-TUMOR_peak_32797 chr22 20772573 20772784 + 4.08627 NA Intergenic Intergenic 19468 NM_182895 91179 Hs.474251 NM_153334 HPRD:15299 SCARF2 NSR1|SREC-II|SREC2|SRECRP-1|VDEGS scavenger receptor class F, member 2 protein-coding 13-PTNLD9-TUMOR_peak_21109 chr17 41116346 41116547 + 4.08627 NA promoter-TSS (NM_001261434) promoter-TSS (NM_001261434) 69 NM_001261434 80755 Hs.317403 NM_001261434 HPRD:14524 AARSD1 - alanyl-tRNA synthetase domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_55642 chrX 22693170 22693314 + 4.08627 NA intron (NR_073010, intron 4 of 5) intron (NR_073010, intron 4 of 5) -324836 NM_182699 168400 Hs.434416 NM_182699 HPRD:06466 DDX53 CAGE|CT26 DEAD (Asp-Glu-Ala-Asp) box polypeptide 53 protein-coding 13-PTNLD9-TUMOR_peak_5609 chr1 225707301 225707395 + 4.08627 NA intron (NM_001008493, intron 4 of 14) intron (NM_001008493, intron 4 of 14) -90791 NM_194442 3930 Hs.435166 NM_002296 HPRD:02488 LBR DHCR14B|LMN2R|PHA|TDRD18 lamin B receptor protein-coding 13-PTNLD9-TUMOR_peak_31697 chr20 56687147 56687388 + 4.08627 NA Intergenic Intergenic -38716 NM_178456 128602 Hs.43977 NM_178456 HPRD:12787 C20orf85 LLC1|bA196N14.1 chromosome 20 open reading frame 85 protein-coding 13-PTNLD9-TUMOR_peak_36705 chr3 170767752 170767884 + 4.08627 NA Intergenic Intergenic -23050 NM_000340 6514 Hs.167584 NM_000340 HPRD:00685 SLC2A2 GLUT2 solute carrier family 2 (facilitated glucose transporter), member 2 protein-coding 13-PTNLD9-TUMOR_peak_22903 chr18 32173171 32173314 + 4.08627 NA promoter-TSS (NM_001198939) promoter-TSS (NM_001198939) -40 NM_001198938 1837 Hs.643454 NM_001390 HPRD:03141 DTNA D18S892E|DRP3|DTN|DTN-A|LVNC1 dystrobrevin, alpha protein-coding 13-PTNLD9-TUMOR_peak_32192 chr21 35267222 35267356 + 4.08627 NA Intergenic Intergenic 20869 NM_001697 539 Hs.409140 NM_001697 HPRD:02899 ATP5O ATPO|OSCP ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit protein-coding 13-PTNLD9-TUMOR_peak_16207 chr14 71632046 71632169 + 4.08627 NA Intergenic Intergenic -232947 NR_001276 319139 NR_001276 ENSG00000207444 SNORD56B RNU56B small nucleolar RNA, C/D box 56B snoRNA 13-PTNLD9-TUMOR_peak_46405 chr6 158000862 158001022 + 4.08627 NA intron (NM_153746, intron 2 of 8) L1PREC2|LINE|L1 50778 NR_037463 100500899 NR_037463 MIR3692 - microRNA 3692 ncRNA 13-PTNLD9-TUMOR_peak_46284 chr6 150346631 150346772 + 4.08627 NA promoter-TSS (NM_130900) promoter-TSS (NM_130900) -33 NM_130900 154064 Hs.558659 NM_130900 HPRD:17949 RAET1L ULBP6 retinoic acid early transcript 1L protein-coding 13-PTNLD9-TUMOR_peak_27682 chr2 95709285 95709426 + 4.08627 NA intron (NM_022440, intron 1 of 1) intron (NM_022440, intron 1 of 1) 17955 NM_022438 4118 Hs.80395 NM_002371 HPRD:01789 MAL - mal, T-cell differentiation protein protein-coding 13-PTNLD9-TUMOR_peak_46311 chr6 151325871 151326014 + 4.08627 NA intron (NM_001242768, intron 20 of 27) intron (NM_001242768, intron 20 of 27) 138473 NM_001242768 25902 Hs.591343 NM_015440 HPRD:09967 MTHFD1L FTHFSDC1|MTC1THFS|dJ292B18.2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like protein-coding 13-PTNLD9-TUMOR_peak_14677 chr13 43882133 43882227 + 4.08627 NA intron (NM_001127615, intron 11 of 16) intron (NM_001127615, intron 11 of 16) -140808 NR_120399 100874130 Hs.738887 NR_120399 ENOX1-AS2 - ENOX1 antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_43991 chr6 17864546 17864713 + 4.08627 NA intron (NM_001105568, intron 4 of 37) intron (NM_001105568, intron 4 of 37) 123225 NM_001105568 63971 Hs.94499 NM_022113 HPRD:09256 KIF13A RBKIN|bA500C11.2 kinesin family member 13A protein-coding 13-PTNLD9-TUMOR_peak_39794 chr4 163085109 163085267 + 4.08627 NA promoter-TSS (NM_001128427) promoter-TSS (NM_001128427) -2 NM_001128427 56884 Hs.32452 NM_020116 HPRD:10998 FSTL5 - follistatin-like 5 protein-coding 13-PTNLD9-TUMOR_peak_6174 chr1 246772358 246772514 + 4.08627 NA intron (NM_001139459, intron 2 of 8) intron (NM_001139459, intron 2 of 8) 42797 NM_152609 163882 Hs.368353 NM_152609 HPRD:08718 CNST C1orf71|PPP1R64 consortin, connexin sorting protein protein-coding 13-PTNLD9-TUMOR_peak_41767 chr5 112630382 112630494 + 4.08627 NA 5' UTR (NM_002387, exon 1 of 17) 5' UTR (NM_002387, exon 1 of 17) 174 NM_002387 4163 Hs.593171 NM_002387 HPRD:01157 MCC MCC1 mutated in colorectal cancers protein-coding 13-PTNLD9-TUMOR_peak_56159 chrX 74742929 74743066 + 4.08627 NA 5' UTR (NM_001146256, exon 1 of 11) 5' UTR (NM_001146256, exon 1 of 11) 340 NM_001146256 158866 Hs.253211 NM_144969 HPRD:06758 ZDHHC15 MRX91 zinc finger, DHHC-type containing 15 protein-coding 13-PTNLD9-TUMOR_peak_54621 chr9 122710922 122711016 + 4.08627 NA Intergenic Intergenic 296359 NR_029604 406939 NR_029604 miRBase:MI0000262 MIR147A MIR147|MIRN147|hsa-mir-147a microRNA 147a ncRNA 13-PTNLD9-TUMOR_peak_53777 chr9 84817850 84817944 + 4.08627 NA Intergenic Intergenic 214210 NM_001001670 389763 Hs.209545 NM_001001670 HPRD:13531 SPATA31D1 FAM75D1 SPATA31 subfamily D, member 1 protein-coding 13-PTNLD9-TUMOR_peak_30347 chr20 4666910 4667161 + 4.08627 NA promoter-TSS (NM_001080123) promoter-TSS (NM_001080123) -122 NM_001080123 5621 Hs.472010 NM_000311 HPRD:01453 PRNP ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30 prion protein protein-coding 13-PTNLD9-TUMOR_peak_24613 chr19 29492162 29492436 + 4.08627 NA Intergenic Intergenic -1163 NR_040036 100505835 Hs.176539 NR_040036 ENSG00000267014 LOC100505835 - uncharacterized LOC100505835 ncRNA 13-PTNLD9-TUMOR_peak_54516 chr9 116815996 116816126 + 4.08627 NA 3' UTR (NM_133374, exon 14 of 14) 3' UTR (NM_133374, exon 14 of 14) 24691 NM_001633 259 Hs.436911 NM_001633 HPRD:01467 AMBP A1M|EDC1|HCP|HI30|IATIL|ITI|ITIL|ITILC|UTI alpha-1-microglobulin/bikunin precursor protein-coding 13-PTNLD9-TUMOR_peak_43000 chr5 171492754 171492923 + 4.08627 NA intron (NM_005990, intron 12 of 18) MLT1K|LTR|ERVL-MaLR -58961 NM_033645 23291 Hs.484138 NM_012300 HPRD:07294 FBXW11 BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos F-box and WD repeat domain containing 11 protein-coding 13-PTNLD9-TUMOR_peak_27153 chr2 68202164 68202258 + 4.08627 NA Intergenic Intergenic 87948 NM_173177 10438 Hs.602900 NM_006333 C1D LRP1|SUN-CoR|SUNCOR|hC1D C1D nuclear receptor corepressor protein-coding 13-PTNLD9-TUMOR_peak_48022 chr7 75683480 75683800 + 4.08627 NA intron (NM_001282404, intron 1 of 7) intron (NM_001282404, intron 1 of 7) 6303 NM_005918 4191 Hs.520967 NM_005918 HPRD:01099 MDH2 M-MDH|MDH|MGC:3559|MOR1 malate dehydrogenase 2, NAD (mitochondrial) protein-coding 13-PTNLD9-TUMOR_peak_8402 chr10 117614721 117614815 + 4.08627 NA intron (NM_207303, intron 28 of 28) intron (NM_207303, intron 28 of 28) 417051 NM_145793 2674 Hs.388347 NM_005264 HPRD:03291 GFRA1 GDNFR|GDNFRA|GFR-ALPHA-1|RET1L|RETL1|TRNR1 GDNF family receptor alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_46648 chr7 872448 872599 + 4.08627 NA intron (NM_001130965, intron 1 of 18) intron (NM_001130965, intron 1 of 18) 381 NM_001130965 23353 Hs.438072 NM_025154 HPRD:16257 SUN1 UNC84A Sad1 and UNC84 domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_22160 chr17 76339355 76339468 + 4.08627 NA Intergenic Intergenic 16749 NM_003955 9021 Hs.527973 NM_003955 HPRD:05006 SOCS3 ATOD4|CIS3|Cish3|SOCS-3|SSI-3|SSI3 suppressor of cytokine signaling 3 protein-coding 13-PTNLD9-TUMOR_peak_16504 chr14 95827861 95828106 + 4.08627 NA Intergenic Intergenic 32062 NR_110127 101929080 Hs.525567 NR_110127 ENSG00000258630 LOC101929080 - uncharacterized LOC101929080 ncRNA 13-PTNLD9-TUMOR_peak_38232 chr4 41210606 41210714 + 4.08627 NA intron (NM_004307, intron 1 of 17) intron (NM_004307, intron 1 of 17) 5975 NM_001166050 323 Hs.479602 NM_004307 HPRD:04088 APBB2 FE65L|FE65L1 amyloid beta (A4) precursor protein-binding, family B, member 2 protein-coding 13-PTNLD9-TUMOR_peak_3819 chr1 154945126 154945321 + 4.08627 NA intron (NM_001130041, intron 1 of 12) intron (NM_001130041, intron 1 of 12) 1736 NM_001130041 6464 Hs.433795 NM_003029 HPRD:02780 SHC1 SHC|SHCA SHC (Src homology 2 domain containing) transforming protein 1 protein-coding 13-PTNLD9-TUMOR_peak_52010 chr8 129103479 129103573 + 4.08627 NA intron (NR_003367, intron 5 of 7) intron (NR_003367, intron 5 of 7) 42128 NR_031612 100302175 NR_031612 miRBase:MI0006340 MIR1207 MIRN1207|hsa-mir-1207 microRNA 1207 ncRNA 13-PTNLD9-TUMOR_peak_10284 chr11 66049988 66050163 + 4.08619 NA intron (NR_073078, intron 2 of 5) CpG 4403 NR_073079 254263 Hs.437072 NM_182553 HPRD:13078 CNIH2 CNIH-2|Cnil cornichon family AMPA receptor auxiliary protein 2 protein-coding 13-PTNLD9-TUMOR_peak_30863 chr20 33857048 33857287 + 4.08619 NA intron (NM_006690, intron 6 of 8) intron (NM_006690, intron 6 of 8) 8793 NR_102706 101410538 Hs.356273 NR_102705 MMP24-AS1 - MMP24 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_34923 chr3 69788788 69788882 + 4.08619 NA exon (NM_198159, exon 1 of 10) exon (NM_198159, exon 1 of 10) 249 NM_198159 4286 Hs.166017 NM_000248 HPRD:01138 MITF CMM8|MI|WS2|WS2A|bHLHe32 microphthalmia-associated transcription factor protein-coding 13-PTNLD9-TUMOR_peak_13383 chr12 76953672 76953776 + 4.08619 NA promoter-TSS (NM_020841) promoter-TSS (NM_020841) -135 NM_001003712 114882 Hs.430849 NM_020841 HPRD:09478 OSBPL8 MST120|MSTP120|ORP8|OSBP10 oxysterol binding protein-like 8 protein-coding 13-PTNLD9-TUMOR_peak_15338 chr14 23777604 23777711 + 4.08619 NA intron (NM_001199864, intron 3 of 8) intron (NM_001199864, intron 3 of 8) 1588 NM_001199839 599 Hs.410026 NM_004050 HPRD:03569 BCL2L2 BCL-W|BCL2-L-2|BCLW|PPP1R51 BCL2-like 2 protein-coding 13-PTNLD9-TUMOR_peak_46200 chr6 144385153 144385366 + 4.07873 NA intron (NM_001289043, intron 1 of 6) CpG 476 NM_001080955 5325 Hs.743225 NM_002656 HPRD:16010 PLAGL1 LOT1|ZAC|ZAC1 pleiomorphic adenoma gene-like 1 protein-coding 13-PTNLD9-TUMOR_peak_47791 chr7 68379566 68379660 + 4.07873 NA Intergenic MIR|SINE|MIR 682868 NR_108105 100507468 Hs.362492 NR_108105 LOC100507468 - uncharacterized LOC100507468 ncRNA 13-PTNLD9-TUMOR_peak_16479 chr14 93631648 93631742 + 4.07873 NA Intergenic LTR2B|LTR|ERV1 19554 NM_022151 64112 Hs.24719 NM_022151 HPRD:17580 MOAP1 MAP-1|PNMA4 modulator of apoptosis 1 protein-coding 13-PTNLD9-TUMOR_peak_53620 chr9 74930029 74930250 + 4.07873 NA non-coding (NR_110953, exon 2 of 2) non-coding (NR_110953, exon 2 of 2) 9787 NR_110952 100507540 Hs.54957 NR_110952 ENSG00000225434 LINC01504 - long intergenic non-protein coding RNA 1504 ncRNA 13-PTNLD9-TUMOR_peak_14206 chr12 124844347 124844538 + 4.07873 NA intron (NM_001077261, intron 23 of 47) intron (NM_001077261, intron 23 of 47) -22654 NR_106940 102466204 NR_106940 MIR6880 hsa-mir-6880 microRNA 6880 ncRNA 13-PTNLD9-TUMOR_peak_45609 chr6 83073552 83073654 + 4.07873 NA promoter-TSS (NM_001166392) promoter-TSS (NM_001166392) -358 NM_001166392 7162 Hs.82128 NM_006670 HPRD:01837 TPBG 5T4|5T4AG|M6P1|WAIF1 trophoblast glycoprotein protein-coding 13-PTNLD9-TUMOR_peak_9151 chr11 13945339 13945594 + 4.07873 NA Intergenic Intergenic -38718 NM_006108 10418 Hs.643864 NM_006108 SPON1 VSGP/F-spondin|f-spondin spondin 1, extracellular matrix protein protein-coding 13-PTNLD9-TUMOR_peak_37825 chr4 7264980 7265093 + 4.07873 NA intron (NM_020777, intron 1 of 26) intron (NM_020777, intron 1 of 26) -47141 NR_039961 100616471 NR_039961 MIR4798 - microRNA 4798 ncRNA 13-PTNLD9-TUMOR_peak_5539 chr1 223959532 223959703 + 4.07873 NA exon (NM_001146068, exon 19 of 21) exon (NM_001146068, exon 19 of 21) 59498 NM_001748 824 Hs.350899 NM_001748 HPRD:00254 CAPN2 CANP2|CANPL2|CANPml|mCANP calpain 2, (m/II) large subunit protein-coding 13-PTNLD9-TUMOR_peak_7606 chr10 71218298 71218392 + 4.07873 NA intron (NM_012339, intron 1 of 7) intron (NM_012339, intron 1 of 7) 7119 NM_012339 23555 Hs.499941 NM_012339 HPRD:15511 TSPAN15 2700063A19Rik|NET-7|NET7|TM4SF15 tetraspanin 15 protein-coding 13-PTNLD9-TUMOR_peak_32060 chr21 29534452 29534614 + 4.07873 NA Intergenic HERVH-int|LTR|ERV1 148851 NR_027246 246705 Hs.505079 NM_145180 HPRD:10778 LINC00314 C21orf94|NCRNA00314 long intergenic non-protein coding RNA 314 ncRNA 13-PTNLD9-TUMOR_peak_2826 chr1 111020158 111020446 + 4.07873 NA Intergenic Intergenic -3086 NR_003599 643160 Hs.532720 NR_003599 ENSG00000240194 CYMP - chymosin pseudogene pseudo 13-PTNLD9-TUMOR_peak_53343 chr9 44836943 44837071 + 4.07701 NA Intergenic Intergenic -153229 NR_027421 100132948 Hs.645763 NM_001024942 ENSG00000154537 FAM27C FAM27A|FAM27A1|FAM27A3 family with sequence similarity 27, member C ncRNA 13-PTNLD9-TUMOR_peak_48306 chr7 92157539 92157653 + 4.07096 NA promoter-TSS (NM_032120) promoter-TSS (NM_032120) 249 NM_001282678 5189 Hs.164682 NM_000466 HPRD:03682 PEX1 PBD1A|PBD1B|ZWS|ZWS1 peroxisomal biogenesis factor 1 protein-coding 13-PTNLD9-TUMOR_peak_21778 chr17 62782576 62782690 + 4.06172 NA intron (NR_024386, intron 10 of 10) intron (NR_024386, intron 10 of 10) -4516 NR_026899 146880 Hs.117853 NR_026899 ENSG00000215769 LOC146880 - Rho GTPase activating protein 27 pseudogene pseudo 13-PTNLD9-TUMOR_peak_55058 chr9 139929727 139929874 + 4.06172 NA 3' UTR (NM_207511, exon 3 of 3) 3' UTR (NM_207511, exon 3 of 3) -2508 NM_004479 2529 Hs.457 NM_004479 HPRD:03611 FUT7 FucT-VII fucosyltransferase 7 (alpha (1,3) fucosyltransferase) protein-coding 13-PTNLD9-TUMOR_peak_46215 chr6 146056051 146056163 + 4.06172 NA intron (NR_038246, intron 1 of 2) CpG 102 NR_038246 100507557 Hs.124537 NR_038244 ENSG00000235652 LOC100507557 - uncharacterized LOC100507557 ncRNA 13-PTNLD9-TUMOR_peak_6590 chr10 17395738 17395854 + 4.06172 NA intron (NM_001004470, intron 4 of 7) intron (NM_001004470, intron 4 of 7) -33139 NR_034129 100128098 Hs.530588 NR_034129 ENSG00000204832 ST8SIA6-AS1 - ST8SIA6 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_3004 chr1 117047075 117047293 + 4.06172 NA Intergenic Intergenic 66531 NR_026665 965 Hs.34341 NM_001779 HPRD:01081 CD58 LFA-3|LFA3|ag3 CD58 molecule protein-coding 13-PTNLD9-TUMOR_peak_17749 chr15 79165853 79165999 + 4.06172 NA intron (NM_001265604, intron 1 of 11) CpG 595 NM_001265605 10933 Hs.374503 NM_006791 HPRD:09532 MORF4L1 Eaf3|HsT17725|MEAF3|MORFRG15|MRG15|S863-6 mortality factor 4 like 1 protein-coding 13-PTNLD9-TUMOR_peak_4913 chr1 200862757 200862900 + 4.05807 NA intron (NM_018265, intron 1 of 9) intron (NM_018265, intron 1 of 9) -1121 NM_001142569 55765 Hs.518997 NM_018265 HPRD:07712 C1orf106 - chromosome 1 open reading frame 106 protein-coding 13-PTNLD9-TUMOR_peak_47490 chr7 51230550 51230644 + 4.05716 NA intron (NM_001287436, intron 5 of 13) intron (NM_001287436, intron 5 of 13) 153918 NM_015198 23242 Hs.99141 NM_015198 HPRD:10843 COBL - cordon-bleu WH2 repeat protein protein-coding 13-PTNLD9-TUMOR_peak_38782 chr4 85500642 85500818 + 4.05716 NA Intergenic Intergenic -3327 NM_001263 1040 Hs.654899 NM_001263 HPRD:11944 CDS1 CDS CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 1 protein-coding 13-PTNLD9-TUMOR_peak_39598 chr4 149753266 149753403 + 4.05716 NA Intergenic MER125|DNA|DNA -389662 NM_001166104 4306 Hs.163924 NM_000901 HPRD:02991 NR3C2 MCR|MLR|MR|NR3C2VIT nuclear receptor subfamily 3, group C, member 2 protein-coding 13-PTNLD9-TUMOR_peak_49999 chr8 7178977 7179184 + 4.05716 NA intron (NR_027423, intron 6 of 6) L1PBa|LINE|L1 8712 NR_003668 641517 Hs.616079 NM_001037380 ENSG00000206034 DEFB109P1B DEF109P1B|DEFB109 defensin, beta 109, pseudogene 1B pseudo 13-PTNLD9-TUMOR_peak_13772 chr12 109305855 109305965 + 4.05716 NA 3' UTR (NM_018711, exon 15 of 15) 3' UTR (NM_018711, exon 15 of 15) 32053 NM_001917 1610 Hs.113227 NM_001917 HPRD:15917 DAO DAAO|DAMOX|OXDA D-amino-acid oxidase protein-coding 13-PTNLD9-TUMOR_peak_36770 chr3 173429531 173429671 + 4.05716 NA intron (NM_014932, intron 3 of 6) intron (NM_014932, intron 3 of 6) 208985 NR_046664 100874010 Hs.624265 NR_046664 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_10749 chr11 78912922 78913016 + 4.05716 NA intron (NM_001098816, intron 3 of 33) L2b|LINE|L2 200184 NR_030598 100126333 NR_030598 miRBase:MI0005543 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 13-PTNLD9-TUMOR_peak_43698 chr6 8064013 8064266 + 4.05716 NA intron (NR_037618, intron 3 of 6) CpG 508 NR_037616 100526836 Hs.150837 NR_037616 ENSG00000259040 BLOC1S5-TXNDC5 MUTED-TXNDC5 BLOC1S5-TXNDC5 readthrough (NMD candidate) ncRNA 13-PTNLD9-TUMOR_peak_22808 chr18 22182213 22182307 + 4.05716 NA Intergenic Intergenic -25886 NR_040033 729950 Hs.585850 NR_040033 ENSG00000265485 LOC729950 - uncharacterized LOC729950 ncRNA 13-PTNLD9-TUMOR_peak_16233 chr14 73958288 73958421 + 4.05186 NA exon (NM_024644, exon 1 of 1) exon (NM_024644, exon 1 of 1) 715 NM_024644 79697 Hs.509916 NM_024644 C14orf169 MAPJD|NO66|ROX|hsNO66 chromosome 14 open reading frame 169 protein-coding 13-PTNLD9-TUMOR_peak_42471 chr5 144558775 144558933 + 4.05186 NA Intergenic Intergenic 656078 NM_138492 153768 Hs.314261 NM_138492 HPRD:14479 PRELID2 - PRELI domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_38211 chr4 39699566 39699660 + 4.05186 NA promoter-TSS (NM_005339) promoter-TSS (NM_005339) -51 NM_005339 3093 Hs.50308 NM_005339 HPRD:04165 UBE2K E2-25K|HIP2|HYPG|LIG|UBC1 ubiquitin-conjugating enzyme E2K protein-coding 13-PTNLD9-TUMOR_peak_11794 chr12 1459582 1459750 + 4.05186 NA intron (NM_001301248, intron 14 of 18) intron (NM_001301248, intron 14 of 18) -149991 NR_028415 100292680 Hs.391695 NR_028415 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 13-PTNLD9-TUMOR_peak_50935 chr8 54426961 54427074 + 4.05186 NA Intergenic Intergenic -262760 NM_001282904 4986 Hs.106795 NM_000912 HPRD:01309 OPRK1 K-OR-1|KOR|KOR-1|OPRK opioid receptor, kappa 1 protein-coding 13-PTNLD9-TUMOR_peak_815 chr1 27677907 27678011 + 4.05186 NA exon (NM_001193308, exon 13 of 15) exon (NM_001193308, exon 13 of 15) 9476 NM_032872 84958 Hs.469175 NM_032872 ENSG00000142765 SYTL1 JFC1|SLP1 synaptotagmin-like 1 protein-coding 13-PTNLD9-TUMOR_peak_24135 chr19 13875325 13875510 + 4.05186 NA promoter-TSS (NM_032285) promoter-TSS (NM_032285) 80 NM_032285 84245 Hs.439370 NM_032285 HPRD:14548 MRI1 MRDI|MTNA|Ypr118w methylthioribose-1-phosphate isomerase 1 protein-coding 13-PTNLD9-TUMOR_peak_40611 chr5 36156407 36156540 + 4.04002 NA intron (NM_001243120, intron 2 of 7) intron (NM_001243120, intron 2 of 7) 4328 NM_005983 6502 Hs.23348 NM_005983 HPRD:03256 SKP2 FBL1|FBXL1|FLB1|p45 S-phase kinase-associated protein 2, E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_22243 chr17 78875313 78875408 + 4.03840 NA intron (NM_020761, intron 20 of 33) intron (NM_020761, intron 20 of 33) -90281 NM_024591 79643 Hs.514560 NM_024591 HPRD:08564 CHMP6 VPS20 charged multivesicular body protein 6 protein-coding 13-PTNLD9-TUMOR_peak_9040 chr11 10681396 10681499 + 4.03840 NA intron (NM_001206880, intron 1 of 19) intron (NM_001206880, intron 1 of 19) -7599 NM_001098579 10335 Hs.501898 NM_130385 HPRD:05242 MRVI1 IRAG|JAW1L murine retrovirus integration site 1 homolog protein-coding 13-PTNLD9-TUMOR_peak_17995 chr15 92409980 92410080 + 4.03840 NA intron (NM_013272, intron 1 of 9) intron (NM_013272, intron 1 of 9) 13092 NM_013272 28232 Hs.311187 NM_013272 HPRD:07502 SLCO3A1 OATP-D|OATP3A1|OATPD|SLC21A11 solute carrier organic anion transporter family, member 3A1 protein-coding 13-PTNLD9-TUMOR_peak_33906 chr3 14848239 14848383 + 4.03840 NA Intergenic Intergenic -12158 NM_152536 152273 Hs.412406 NM_152536 HPRD:13322 FGD5 ZFYVE23 FYVE, RhoGEF and PH domain containing 5 protein-coding 13-PTNLD9-TUMOR_peak_2962 chr1 115872792 115873060 + 4.03840 NA intron (NM_002506, intron 1 of 2) intron (NM_002506, intron 1 of 2) 7931 NM_002506 4803 Hs.2561 NM_002506 HPRD:08874 NGF Beta-NGF|HSAN5|NGFB nerve growth factor (beta polypeptide) protein-coding 13-PTNLD9-TUMOR_peak_50328 chr8 23020998 23021122 + 4.03840 NA intron (NM_003840, intron 1 of 8) CpG 483 NM_003840 8793 Hs.213467 NM_003840 HPRD:04682 TNFRSF10D CD264|DCR2|TRAIL-R4|TRAILR4|TRUNDD tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain protein-coding 13-PTNLD9-TUMOR_peak_1209 chr1 38512888 38512992 + 4.03685 NA promoter-TSS (NM_002699) promoter-TSS (NM_002699) -490 NM_002699 5453 Hs.1837 NM_002699 HPRD:03921 POU3F1 OCT6|OTF6|SCIP POU class 3 homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_5316 chr1 208137173 208137336 + 4.03685 NA Intergenic Intergenic -52571 NM_001773 947 Hs.374990 NM_001773 HPRD:00790 CD34 - CD34 molecule protein-coding 13-PTNLD9-TUMOR_peak_1510 chr1 44401435 44401570 + 4.03391 NA intron (NM_057091, intron 3 of 4) intron (NM_057091, intron 3 of 4) 2510 NM_057090 9048 Hs.632404 NM_003976 HPRD:04863 ARTN ENOVIN|EVN|NBN artemin protein-coding 13-PTNLD9-TUMOR_peak_17890 chr15 85743632 85743735 + 4.03391 NA Intergenic Intergenic 4835 NR_049748 642423 Hs.681665 NR_049748 LOC642423 - golgin A2 pseudogene pseudo 13-PTNLD9-TUMOR_peak_28178 chr2 115533250 115533458 + 4.02522 NA intron (NM_001178036, intron 2 of 26) intron (NM_001178036, intron 2 of 26) -288893 NM_001178037 57628 Hs.580539 NM_020868 HPRD:07083 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl-peptidase 10 (non-functional) protein-coding 13-PTNLD9-TUMOR_peak_37881 chr4 8334725 8334820 + 4.02522 NA Intergenic Intergenic 63280 NM_053044 94031 Hs.479119 NM_053044 HPRD:08821 HTRA3 Prsp|Tasp HtrA serine peptidase 3 protein-coding 13-PTNLD9-TUMOR_peak_2722 chr1 109045845 109046045 + 4.02522 NA Intergenic Intergenic 53041 NM_001143987 653149 Hs.712226 NM_001143987 ENSG00000186086 NBPF6 - neuroblastoma breakpoint family, member 6 protein-coding 13-PTNLD9-TUMOR_peak_25938 chr2 1493844 1494238 + 4.02522 NA intron (NM_175722, intron 8 of 14) CpG 75861 NM_175721 7173 Hs.467554 NM_000547 HPRD:06000 TPO MSA|TDH2A|TPX thyroid peroxidase protein-coding 13-PTNLD9-TUMOR_peak_36531 chr3 157324515 157324759 + 4.02522 NA Intergenic Intergenic 63504 NM_001130002 152078 Hs.259046 NM_001099777 ENSG00000174899 C3orf55 - chromosome 3 open reading frame 55 protein-coding 13-PTNLD9-TUMOR_peak_27392 chr2 85034342 85034453 + 4.02522 NA intron (NM_001370, intron 71 of 76) intron (NM_001370, intron 71 of 76) 73972 NM_001080824 129293 Hs.469134 NM_001080824 ENSG00000186854 TRABD2A C2orf89|TIKI1 TraB domain containing 2A protein-coding 13-PTNLD9-TUMOR_peak_48689 chr7 103452548 103452642 + 4.02522 NA intron (NM_005045, intron 3 of 64) intron (NM_005045, intron 3 of 64) 177368 NM_005045 5649 Hs.655654 NM_005045 HPRD:02742 RELN LIS2|PRO1598|RL reelin protein-coding 13-PTNLD9-TUMOR_peak_14146 chr12 122934003 122934177 + 4.02522 NA Intergenic L1M4|LINE|L1 -26974 NM_002956 6249 Hs.524809 NM_002956 HPRD:01568 CLIP1 CLIP|CLIP-170|CLIP170|CYLN1|RSN CAP-GLY domain containing linker protein 1 protein-coding 13-PTNLD9-TUMOR_peak_11067 chr11 102867072 102867203 + 4.02522 NA Intergenic Intergenic -40674 NM_002427 4322 Hs.2936 NM_002427 HPRD:02522 MMP13 CLG3|MANDP1|MMP-13 matrix metallopeptidase 13 (collagenase 3) protein-coding 13-PTNLD9-TUMOR_peak_10799 chr11 84208925 84209277 + 4.02522 NA intron (NM_001364, intron 2 of 22) intron (NM_001364, intron 2 of 22) -180719 NM_001206769 1740 Hs.367656 NM_001364 HPRD:04663 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs, large homolog 2 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_33239 chr22 38173369 38173529 + 4.02522 NA TTS (NM_007032) TTS (NM_007032) -27665 NM_005318 3005 Hs.745024 NM_005318 HPRD:00819 H1F0 H10|H1FV H1 histone family, member 0 protein-coding 13-PTNLD9-TUMOR_peak_30149 chr2 239860439 239860538 + 4.02522 NA Intergenic Intergenic -12523 NR_034162 401039 Hs.516791 NM_001001698 HPRD:16969 FLJ43879 - FLJ43879 protein ncRNA 13-PTNLD9-TUMOR_peak_34812 chr3 62304662 62304756 + 4.02522 NA promoter-TSS (NM_001291941) promoter-TSS (NM_001291941) -9 NM_020685 57415 Hs.47166 NM_020685 HPRD:12819 C3orf14 - chromosome 3 open reading frame 14 protein-coding 13-PTNLD9-TUMOR_peak_17954 chr15 90325514 90325608 + 4.02522 NA Intergenic MER41B|LTR|ERV1 5972 NM_001039958 145873 Hs.37311 NM_001039958 ENSG00000188095 MESP2 SCDO2|bHLHc6 mesoderm posterior basic helix-loop-helix transcription factor 2 protein-coding 13-PTNLD9-TUMOR_peak_21789 chr17 63037831 63037970 + 4.02474 NA intron (NM_006572, intron 2 of 3) intron (NM_006572, intron 2 of 3) 13992 NM_001282425 10672 Hs.515018 NM_006572 HPRD:05100 GNA13 G13 guanine nucleotide binding protein (G protein), alpha 13 protein-coding 13-PTNLD9-TUMOR_peak_17972 chr15 90907646 90907740 + 4.02474 NA Intergenic L2a|LINE|L2 12216 NM_001004309 342132 Hs.55307 NM_001004309 ZNF774 - zinc finger protein 774 protein-coding 13-PTNLD9-TUMOR_peak_12239 chr12 15105349 15105509 + 4.02474 NA intron (NM_001175, intron 1 of 5) intron (NM_001175, intron 1 of 5) 9133 NM_001175 397 Hs.504877 NM_001175 HPRD:04162 ARHGDIB D4|GDIA2|GDID4|LYGDI|Ly-GDI|RAP1GN1|RhoGDI2 Rho GDP dissociation inhibitor (GDI) beta protein-coding 13-PTNLD9-TUMOR_peak_34250 chr3 36985677 36986017 + 4.02474 NA intron (NM_014831, intron 1 of 22) CpG 701 NM_014831 9881 Hs.170999 NM_014831 ENSG00000168016 TRANK1 LBA1 tetratricopeptide repeat and ankyrin repeat containing 1 protein-coding 13-PTNLD9-TUMOR_peak_25165 chr19 46286151 46286324 + 4.02474 NA promoter-TSS (NM_001288766) promoter-TSS (NM_001288766) -422 NM_001288766 1760 Hs.631596 NM_004409 HPRD:05645 DMPK DM|DM1|DM1PK|DMK|MDPK|MT-PK dystrophia myotonica-protein kinase protein-coding 13-PTNLD9-TUMOR_peak_28175 chr2 115400183 115400286 + 4.02474 NA intron (NM_001178036, intron 2 of 26) intron (NM_001178036, intron 2 of 26) 181054 NM_001178036 57628 Hs.580539 NM_020868 HPRD:07083 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl-peptidase 10 (non-functional) protein-coding 13-PTNLD9-TUMOR_peak_54898 chr9 132330384 132330478 + 4.02474 NA Intergenic Intergenic -40732 NM_001286796 28989 Hs.744027 NM_014064 HPRD:10628 NTMT1 AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NTM1A N-terminal Xaa-Pro-Lys N-methyltransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_17496 chr15 67442479 67442573 + 4.02474 NA intron (NM_001145103, intron 1 of 8) intron (NM_001145103, intron 1 of 8) 12167 NM_001145103 4088 Hs.727986 NM_005902 HPRD:04380 SMAD3 HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3 SMAD family member 3 protein-coding 13-PTNLD9-TUMOR_peak_44986 chr6 41701570 41701744 + 4.02395 NA intron (NM_007162, intron 1 of 9) intron (NM_007162, intron 1 of 9) 482 NM_001271945 7942 Hs.485360 NM_007162 HPRD:02847 TFEB ALPHATFEB|BHLHE35|TCFEB transcription factor EB protein-coding 13-PTNLD9-TUMOR_peak_27799 chr2 99486456 99486603 + 4.02395 NA intron (NM_207362, intron 1 of 9) intron (NM_207362, intron 1 of 9) 66155 NM_207362 343990 Hs.469398 NM_207362 HPRD:14620 KIAA1211L C2orf55 KIAA1211-like protein-coding 13-PTNLD9-TUMOR_peak_22334 chr17 80309761 80309931 + 4.02025 NA Intergenic Intergenic -7277 NM_207459 400629 Hs.231897 NM_207459 HPRD:16940 TEX19 - testis expressed 19 protein-coding 13-PTNLD9-TUMOR_peak_340 chr1 9600123 9600252 + 4.02025 NA intron (NM_032315, intron 1 of 6) CpG 659 NM_032315 84275 Hs.568613 NM_032315 SLC25A33 BMSC-MCP|PNC1 solute carrier family 25 (pyrimidine nucleotide carrier), member 33 protein-coding 13-PTNLD9-TUMOR_peak_10681 chr11 76156801 76156959 + 4.02025 NA intron (NM_001300944, intron 1 of 20) intron (NM_001300944, intron 1 of 20) 811 NM_001300942 56946 Hs.352588 NM_020193 HPRD:10544 C11orf30 EMSY chromosome 11 open reading frame 30 protein-coding 13-PTNLD9-TUMOR_peak_43843 chr6 13354681 13354813 + 4.02025 NA Intergenic Intergenic -25932 NM_001258457 51256 Hs.484678 NM_016495 HPRD:18165 TBC1D7 MGCPH|PIG51|TBC7 TBC1 domain family, member 7 protein-coding 13-PTNLD9-TUMOR_peak_30887 chr20 34287669 34287815 + 4.01603 NA promoter-TSS (NM_001198989) promoter-TSS (NM_001198989) -455 NM_021100 9054 Hs.194692 NM_021100 HPRD:04597 NFS1 IscS|NIFS NFS1 cysteine desulfurase protein-coding 13-PTNLD9-TUMOR_peak_13887 chr12 112819879 112820017 + 4.01603 NA promoter-TSS (NM_001109662) promoter-TSS (NM_001109662) -52 NM_001109662 283450 Hs.530943 NM_173813 HPRD:08170 HECTD4 C12orf51|POTAGE HECT domain containing E3 ubiquitin protein ligase 4 protein-coding 13-PTNLD9-TUMOR_peak_49665 chr7 151145344 151145568 + 4.01603 NA Intergenic CpG -8357 NM_144727 155051 Hs.647104 NM_144727 HPRD:16761 CRYGN - crystallin, gamma N protein-coding 13-PTNLD9-TUMOR_peak_46966 chr7 18535721 18535912 + 4.01603 NA promoter-TSS (NM_058176) promoter-TSS (NM_058176) -69 NM_178425 9734 Hs.196054 NM_014707 HPRD:05944 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 13-PTNLD9-TUMOR_peak_15976 chr14 62222086 62222216 + 4.01603 NA Intergenic Intergenic -6344 NR_045406 100750247 Hs.597216 NR_045406 HIF1A-AS2 3'aHIF-1A|aHIF HIF1A antisense RNA 2 ncRNA 13-PTNLD9-TUMOR_peak_47273 chr7 39606129 39606241 + 4.01547 NA intron (NM_001282446, intron 1 of 2) CpG 210 NM_001282446 57002 Hs.72168 NM_020192 HPRD:16669 YAE1D1 C7orf36 Yae1 domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_9611 chr11 43380678 43380773 + 4.01547 NA intron (NM_018259, intron 1 of 23) CpG 290 NM_018259 55761 Hs.191186 NM_018259 HPRD:15582 TTC17 - tetratricopeptide repeat domain 17 protein-coding 13-PTNLD9-TUMOR_peak_53188 chr9 37594551 37594721 + 4.01547 NA Intergenic MIR3|SINE|MIR -2000 NM_001134484 401505 Hs.130774 NM_001001790 HPRD:16672 TOMM5 C9orf105|Tom5|bA613M10.3 translocase of outer mitochondrial membrane 5 homolog (yeast) protein-coding 13-PTNLD9-TUMOR_peak_36895 chr3 181342267 181342482 + 4.01547 NA intron (NR_075090, intron 2 of 2) intron (NR_075090, intron 2 of 2) 14252 NR_004053 347689 Hs.654932 NR_004053 SOX2-OT NCRNA00043|SOX2OT SOX2 overlapping transcript ncRNA 13-PTNLD9-TUMOR_peak_12740 chr12 50262987 50263128 + 4.01547 NA 3' UTR (NM_012306, exon 12 of 12) 3' UTR (NM_012306, exon 12 of 12) -26145 NM_181708 144233 Hs.142736 NM_181708 BCDIN3D - BCDIN3 domain containing protein-coding 13-PTNLD9-TUMOR_peak_38120 chr4 25654026 25654163 + 4.01547 NA Intergenic Intergenic -3341 NM_001177998 10568 Hs.479372 NM_006424 HPRD:07251 SLC34A2 NAPI-3B|NAPI-IIb|NPTIIb solute carrier family 34 (type II sodium/phosphate contransporter), member 2 protein-coding 13-PTNLD9-TUMOR_peak_24345 chr19 17889156 17889283 + 4.00603 NA intron (NM_015122, intron 19 of 28) intron (NM_015122, intron 19 of 28) -16700 NM_014256 10331 Hs.69009 NM_014256 HPRD:10431 B3GNT3 B3GAL-T8|B3GN-T3|B3GNT-3|HP10328|TMEM3|beta3Gn-T3 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3 protein-coding 13-PTNLD9-TUMOR_peak_19843 chr16 79634272 79634439 + 4.00072 NA 5' UTR (NM_005360, exon 1 of 2) 5' UTR (NM_005360, exon 1 of 2) 267 NM_005360 4094 Hs.134859 NM_005360 HPRD:01518 MAF CCA4|c-MAF v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog protein-coding 13-PTNLD9-TUMOR_peak_52179 chr8 134582597 134582783 + 3.99740 NA intron (NM_173344, intron 1 of 9) CpG 1493 NM_173344 6482 Hs.374257 NM_003033 HPRD:06219 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_28241 chr2 120233958 120234052 + 3.99731 NA intron (NM_002980, intron 3 of 12) MamGypLTR3|LTR|Gypsy 44559 NM_183240 140738 Hs.26216 NM_183240 HPRD:15536 TMEM37 PR|PR1 transmembrane protein 37 protein-coding 13-PTNLD9-TUMOR_peak_51505 chr8 104132443 104132604 + 3.99731 NA Intergenic Intergenic -20398 NM_024812 79870 Hs.533446 NM_024812 HPRD:09422 BAALC - brain and acute leukemia, cytoplasmic protein-coding 13-PTNLD9-TUMOR_peak_2175 chr1 70033163 70033264 + 3.99731 NA Intergenic CpG -192645 NM_020794 57554 Hs.479658 NM_020794 HPRD:09930 LRRC7 DENSIN leucine rich repeat containing 7 protein-coding 13-PTNLD9-TUMOR_peak_29696 chr2 208890057 208890211 + 3.99731 NA 5' UTR (NM_001080475, exon 1 of 8) 5' UTR (NM_001080475, exon 1 of 8) 150 NM_001080475 389072 Hs.159188 NM_001080475 ENSG00000178385 PLEKHM3 DAPR|PLEKHM1L pleckstrin homology domain containing, family M, member 3 protein-coding 13-PTNLD9-TUMOR_peak_33174 chr22 35777016 35777230 + 3.99731 NA promoter-TSS (NM_002133) promoter-TSS (NM_002133) 63 NM_002133 3162 Hs.517581 NM_002133 HPRD:00782 HMOX1 HMOX1D|HO-1|HSP32|bK286B10 heme oxygenase (decycling) 1 protein-coding 13-PTNLD9-TUMOR_peak_26077 chr2 10113016 10113169 + 3.99731 NA intron (NM_198182, intron 8 of 15) intron (NM_198182, intron 8 of 15) 21300 NM_198182 29841 Hs.418493 NM_198182 HPRD:18176 GRHL1 LBP32|MGR|NH32|TFCP2L2 grainyhead-like 1 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_16399 chr14 89258864 89258969 + 3.99731 NA 5' UTR (NM_183387, exon 1 of 43) 5' UTR (NM_183387, exon 1 of 43) 180 NM_183387 161436 Hs.325846 NM_183387 HPRD:16861 EML5 EMAP-2 echinoderm microtubule associated protein like 5 protein-coding 13-PTNLD9-TUMOR_peak_15574 chr14 36631607 36631701 + 3.99731 NA intron (NR_049735, intron 2 of 3) L1PA7|LINE|L1 14203 NR_049735 100886964 Hs.742592 NR_049735 PTCSC3 - papillary thyroid carcinoma susceptibility candidate 3 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_8088 chr10 98591726 98591878 + 3.99731 NA promoter-TSS (NM_032440) promoter-TSS (NM_032440) -215 NM_001170765 84458 Hs.745068 NM_032440 HPRD:07609 LCOR MLR2 ligand dependent nuclear receptor corepressor protein-coding 13-PTNLD9-TUMOR_peak_21615 chr17 56327156 56327250 + 3.99731 NA intron (NM_001160102, intron 4 of 10) CpG-10927 11416 NM_001160102 4025 Hs.234742 NM_006151 HPRD:11825 LPO SPO lactoperoxidase protein-coding 13-PTNLD9-TUMOR_peak_26489 chr2 30496075 30496301 + 3.99731 NA Intergenic Intergenic 41791 NM_030915 81606 Hs.567598 NM_030915 HPRD:13965 LBH - limb bud and heart development protein-coding 13-PTNLD9-TUMOR_peak_44478 chr6 30732156 30732284 + 3.99480 NA Intergenic L2|LINE|L2 -19893 NM_003897 8870 Hs.76095 NM_003897 HPRD:04295 IER3 DIF-2|DIF2|GLY96|IEX-1|IEX-1L|IEX1|PRG1 immediate early response 3 protein-coding 13-PTNLD9-TUMOR_peak_28197 chr2 118771013 118771196 + 3.99480 NA intron (NM_019044, intron 1 of 23) CpG 635 NM_019044 54520 Hs.107845 NM_019044 HPRD:08557 CCDC93 - coiled-coil domain containing 93 protein-coding 13-PTNLD9-TUMOR_peak_9075 chr11 12015538 12015643 + 3.99442 NA intron (NM_001018057, intron 3 of 6) intron (NM_001018057, intron 3 of 6) 14596 NM_001018057 27122 Hs.292156 NM_013253 HPRD:05659 DKK3 REIC|RIG dickkopf WNT signaling pathway inhibitor 3 protein-coding 13-PTNLD9-TUMOR_peak_50937 chr8 54570459 54570662 + 3.99442 NA Intergenic Intergenic 185042 NM_213620 51606 Hs.491737 NM_015941 HPRD:10591 ATP6V1H MSTP042|NBP1|SFD|SFDalpha|SFDbeta|VMA13 ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H protein-coding 13-PTNLD9-TUMOR_peak_35924 chr3 131246013 131246189 + 3.99442 NA Intergenic Intergenic -24241 NM_007208 11222 Hs.205163 NM_007208 HPRD:06175 MRPL3 COXPD9|MRL3|RPML3 mitochondrial ribosomal protein L3 protein-coding 13-PTNLD9-TUMOR_peak_5364 chr1 212686568 212686662 + 3.99442 NA Intergenic Intergenic -52061 NM_001030287 467 Hs.460 NM_001674 HPRD:04395 ATF3 - activating transcription factor 3 protein-coding 13-PTNLD9-TUMOR_peak_18746 chr16 22019264 22019399 + 3.99442 NA promoter-TSS (NM_001164579) promoter-TSS (NM_001164579) -125 NM_001164579 730094 Hs.498890 NM_173501 ENSG00000185716 C16orf52 - chromosome 16 open reading frame 52 protein-coding 13-PTNLD9-TUMOR_peak_17546 chr15 69887942 69888036 + 3.99442 NA Intergenic Intergenic 33930 NR_026979 145837 Hs.410126 NR_026979 LOC145837 - uncharacterized LOC145837 ncRNA 13-PTNLD9-TUMOR_peak_34858 chr3 65652171 65652265 + 3.99442 NA intron (NM_001033057, intron 1 of 22) MER103C|DNA|hAT-Charlie -227273 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_45606 chr6 83007853 83007947 + 3.99442 NA Intergenic LTR14C|LTR|ERVK -50429 NM_001300906 25998 Hs.306425 NM_015525 HPRD:12105 IBTK BTBD26|BTKI inhibitor of Bruton agammaglobulinemia tyrosine kinase protein-coding 13-PTNLD9-TUMOR_peak_8029 chr10 94608534 94608637 + 3.99442 NA intron (NM_019053, intron 1 of 21) CpG 360 NM_019053 54536 Hs.655657 NM_019053 HPRD:10216 EXOC6 EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p exocyst complex component 6 protein-coding 13-PTNLD9-TUMOR_peak_35065 chr3 84597882 84598063 + 3.99442 NA Intergenic L1PA16|LINE|L1 320754 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 13-PTNLD9-TUMOR_peak_34375 chr3 43995350 43995499 + 3.99442 NA Intergenic Intergenic -160280 NR_029700 406929 NR_029700 miRBase:MI0000476 MIR138-1 MIRN138-1 microRNA 138-1 ncRNA 13-PTNLD9-TUMOR_peak_37588 chr4 1695259 1695353 + 3.99442 NA 3' UTR (NM_006527, exon 8 of 8) 3' UTR (NM_006527, exon 8 of 8) -9266 NM_001174070 152877 Hs.143314 NM_001013622 HPRD:12900 FAM53A DNTNP family with sequence similarity 53, member A protein-coding 13-PTNLD9-TUMOR_peak_2666 chr1 101725396 101725514 + 3.99224 NA Intergenic Intergenic 23150 NM_001400 1901 Hs.154210 NM_001400 HPRD:03578 S1PR1 CD363|CHEDG1|D1S3362|ECGF1|EDG-1|EDG1|S1P1 sphingosine-1-phosphate receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_17107 chr15 41408581 41408746 + 3.99224 NA promoter-TSS (NM_017553) promoter-TSS (NM_017553) -219 NM_017553 54617 Hs.292949 NM_017553 HPRD:10024 INO80 INO80A|INOC1|hINO80 INO80 complex subunit protein-coding 13-PTNLD9-TUMOR_peak_32959 chr22 24828073 24828167 + 3.99224 NA promoter-TSS (NM_001278498) promoter-TSS (NM_001278498) 33 NM_001278497 135 Hs.197029 NM_000675 HPRD:00043 ADORA2A A2aR|ADORA2|RDC8 adenosine A2a receptor protein-coding 13-PTNLD9-TUMOR_peak_30603 chr20 23030842 23030936 + 3.99095 NA promoter-TSS (NM_000361) promoter-TSS (NM_000361) -588 NM_000361 7056 Hs.2030 NM_000361 HPRD:01764 THBD AHUS6|BDCA3|CD141|THPH12|THRM|TM thrombomodulin protein-coding 13-PTNLD9-TUMOR_peak_49896 chr7 158823362 158823486 + 3.99095 NA exon (NM_003382, exon 13 of 13) exon (NM_003382, exon 13 of 13) 22379 NR_024394 154822 Hs.544783 NM_198345 ENSG00000231419 LINC00689 - long intergenic non-protein coding RNA 689 ncRNA 13-PTNLD9-TUMOR_peak_36811 chr3 177167242 177167390 + 3.98969 NA intron (NR_047568, intron 1 of 3) intron (NR_047568, intron 1 of 3) 7607 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 13-PTNLD9-TUMOR_peak_35649 chr3 124605499 124605811 + 3.98969 NA intron (NM_002213, intron 1 of 14) CpG 489 NM_002213 3693 Hs.536663 NM_002213 HPRD:00949 ITGB5 - integrin, beta 5 protein-coding 13-PTNLD9-TUMOR_peak_16751 chr15 21058901 21058997 + 3.98969 NA intron (NR_110752, intron 6 of 7) MER1A|DNA|hAT-Charlie 12694 NM_001277303 100287399 Hs.722659 NM_001277303 ENSG00000230031 POTEB2 - POTE ankyrin domain family, member B2 protein-coding 13-PTNLD9-TUMOR_peak_44380 chr6 28834551 28834658 + 3.98304 NA Intergenic LTR12C|LTR|ERV1 -3150 NR_033379 401242 Hs.448285 NR_033379 ENSG00000225595 LOC401242 - uncharacterized LOC401242 ncRNA 13-PTNLD9-TUMOR_peak_15835 chr14 55575092 55575200 + 3.97398 NA Intergenic Intergenic -20789 NM_001177388 3958 Hs.531081 NM_002306 HPRD:01090 LGALS3 CBP35|GAL3|GALBP|GALIG|L31|LGALS2|MAC2 lectin, galactoside-binding, soluble, 3 protein-coding 13-PTNLD9-TUMOR_peak_54182 chr9 100954912 100955061 + 3.97398 NA promoter-TSS (NM_052820) promoter-TSS (NM_052820) -30 NM_052820 7464 Hs.113094 NM_003389 HPRD:03695 CORO2A CLIPINB|IR10|WDR2 coronin, actin binding protein, 2A protein-coding 13-PTNLD9-TUMOR_peak_6836 chr10 30783067 30783289 + 3.97089 NA Intergenic Intergenic 60228 NM_005204 1326 Hs.432453 NM_005204 HPRD:01863 MAP3K8 COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT mitogen-activated protein kinase kinase kinase 8 protein-coding 13-PTNLD9-TUMOR_peak_14891 chr13 77600386 77600777 + 3.97089 NA intron (NM_012158, intron 1 of 4) CpG 750 NM_012158 26224 Hs.508284 NM_012158 HPRD:05737 FBXL3 FBL3|FBL3A|FBXL3A F-box and leucine-rich repeat protein 3 protein-coding 13-PTNLD9-TUMOR_peak_7754 chr10 75503975 75504279 + 3.97089 NA promoter-TSS (NM_198597) promoter-TSS (NM_198597) -4 NM_198597 9632 Hs.81964 NM_004922 HPRD:06217 SEC24C - SEC24 family member C protein-coding 13-PTNLD9-TUMOR_peak_9042 chr11 10757811 10757989 + 3.97089 NA Intergenic L2c|LINE|L2 -14911 NM_014633 9646 Hs.725151 NM_014633 HPRD:06717 CTR9 SH2BP1|TSBP|p150|p150TSP CTR9, Paf1/RNA polymerase II complex component protein-coding 13-PTNLD9-TUMOR_peak_29393 chr2 192484939 192485116 + 3.97089 NA Intergenic L1MEc|LINE|L1 -57771 NM_001254736 64859 Hs.591610 NM_022837 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_22749 chr18 20187158 20187322 + 3.97089 NA Intergenic Intergenic 179560 NR_110782 101927571 Hs.335020 NR_110782 ENSG00000266850 LOC101927571 - uncharacterized LOC101927571 ncRNA 13-PTNLD9-TUMOR_peak_33840 chr3 13472779 13472935 + 3.96848 NA Intergenic AluSg4|SINE|Alu -11038 NM_024923 23225 Hs.475525 NM_024923 HPRD:06368 NUP210 GP210|POM210 nucleoporin 210kDa protein-coding 13-PTNLD9-TUMOR_peak_12092 chr12 8850629 8850773 + 3.96848 NA 5' UTR (NM_001297776, exon 1 of 6) 5' UTR (NM_001297776, exon 1 of 6) 205 NM_001297776 57494 Hs.504670 NM_020734 HPRD:13844 RIMKLB FAM80B|NAAGS|NAAGS-I ribosomal modification protein rimK-like family member B protein-coding 13-PTNLD9-TUMOR_peak_35645 chr3 124503987 124504149 + 3.96848 NA intron (NM_002213, intron 10 of 14) intron (NM_002213, intron 10 of 14) 54855 NR_033434 7372 Hs.2057 NM_000373 UMPS OPRT uridine monophosphate synthetase protein-coding 13-PTNLD9-TUMOR_peak_9335 chr11 24518523 24518661 + 3.96341 NA promoter-TSS (NM_001252010) promoter-TSS (NM_001252010) 76 NM_001252008 338645 Hs.144138 NM_001009909 HPRD:17348 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 13-PTNLD9-TUMOR_peak_293 chr1 8724219 8724365 + 3.96341 NA intron (NM_001042681, intron 1 of 22) L2b|LINE|L2 153407 NM_012102 473 Hs.463041 NM_012102 HPRD:05566 RERE ARG|ARP|ATN1L|DNB1 arginine-glutamic acid dipeptide (RE) repeats protein-coding 13-PTNLD9-TUMOR_peak_45518 chr6 74550566 74550708 + 3.96341 NA Intergenic L1PA2|LINE|L1 -144783 NR_110889 101928489 Hs.660059 NR_110889 LOC101928489 - uncharacterized LOC101928489 ncRNA 13-PTNLD9-TUMOR_peak_35064 chr3 84597233 84597432 + 3.96341 NA Intergenic L1PA16|LINE|L1 321394 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 13-PTNLD9-TUMOR_peak_36744 chr3 172259183 172259337 + 3.96341 NA Intergenic AluSx|SINE|Alu -17963 NM_001190942 8743 Hs.478275 NM_003810 HPRD:04670 TNFSF10 APO2L|Apo-2L|CD253|TL2|TRAIL tumor necrosis factor (ligand) superfamily, member 10 protein-coding 13-PTNLD9-TUMOR_peak_25696 chr19 55998332 55998590 + 3.96199 NA 3' UTR (NM_020378, exon 3 of 3) 3' UTR (NM_020378, exon 3 of 3) -1409 NM_001144950 284297 Hs.554182 NM_182571 HPRD:11444 SSC5D - scavenger receptor cysteine rich family, 5 domains protein-coding 13-PTNLD9-TUMOR_peak_43641 chr6 6690227 6690322 + 3.96150 NA Intergenic Intergenic -67215 NR_026970 285780 Hs.655737 NM_173675 HPRD:08165 LY86-AS1 LY86-AS|LY86AS LY86 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_4177 chr1 162185828 162185968 + 3.95388 NA intron (NM_001164757, intron 2 of 9) intron (NM_001164757, intron 2 of 9) 59001 NR_039798 100616386 NR_039798 MIR4654 - microRNA 4654 ncRNA 13-PTNLD9-TUMOR_peak_39095 chr4 113067257 113067373 + 3.95388 NA intron (NM_152400, intron 1 of 1) CpG 762 NM_152400 132720 Hs.23439 NM_152400 C4orf32 - chromosome 4 open reading frame 32 protein-coding 13-PTNLD9-TUMOR_peak_37842 chr4 7846144 7846320 + 3.95388 NA intron (NM_198595, intron 4 of 16) L2b|LINE|L2 90415 NR_026892 84740 Hs.663029 NM_032654 ENSG00000272620 AFAP1-AS1 AFAP1-AS|AFAP1AS AFAP1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_24636 chr19 30301326 30301488 + 3.94498 NA Intergenic Intergenic -1494 NM_001238 898 Hs.244723 NM_001238 HPRD:00455 CCNE1 CCNE cyclin E1 protein-coding 13-PTNLD9-TUMOR_peak_24728 chr19 34972531 34972642 + 3.94498 NA promoter-TSS (NM_001080436) promoter-TSS (NM_001080436) -294 NM_001080436 126374 Hs.585010 NM_001080436 WTIP - Wilms tumor 1 interacting protein protein-coding 13-PTNLD9-TUMOR_peak_6003 chr1 236558437 236558592 + 3.94498 NA promoter-TSS (NM_080738) promoter-TSS (NM_080738) -202 NM_080738 128178 Hs.352224 NM_080738 HPRD:05965 EDARADD ECTD11A|ECTD11B|ED3|EDA3 EDAR-associated death domain protein-coding 13-PTNLD9-TUMOR_peak_8991 chr11 8933037 8933224 + 3.94498 NA promoter-TSS (NM_005418) promoter-TSS (NM_005418) 391 NR_045417 56672 Hs.131180 NM_020642 HPRD:12380 AKIP1 BCA3|C11orf17 A kinase (PRKA) interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_20844 chr17 31214620 31214783 + 3.94498 NA Intergenic L1PA2|LINE|L1 -10799 NM_015194 4642 Hs.602063 NM_015194 HPRD:07581 MYO1D PPP1R108|myr4 myosin ID protein-coding 13-PTNLD9-TUMOR_peak_11029 chr11 100590627 100590721 + 3.94485 NA intron (NM_152432, intron 1 of 23) intron (NM_152432, intron 1 of 23) 32267 NM_152432 143872 Hs.741465 NM_152432 ENSG00000165895 ARHGAP42 GRAF3 Rho GTPase activating protein 42 protein-coding 13-PTNLD9-TUMOR_peak_44567 chr6 31737691 31737785 + 3.94485 NA intron (NM_025258, intron 8 of 16).3 intron (NM_025258, intron 8 of 16).3 6965 NM_001039651 401251 Hs.371225 NM_001039651 ENSG00000228727 SAPCD1 C6orf26|NG23 suppressor APC domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_17730 chr15 78400750 78400844 + 3.94485 NA intron (NM_001271888, intron 3 of 4) intron (NM_001271888, intron 3 of 4) 15870 NM_001101404 646892 Hs.569511 NM_001101404 SH2D7 - SH2 domain containing 7 protein-coding 13-PTNLD9-TUMOR_peak_15046 chr13 103452629 103452984 + 3.94485 NA intron (NM_001159596, intron 1 of 8) CpG -1402 NM_024089 79070 Hs.408629 NM_024089 HPRD:11061 KDELC1 EP58|KDEL1 KDEL (Lys-Asp-Glu-Leu) containing 1 protein-coding 13-PTNLD9-TUMOR_peak_23198 chr18 48761711 48761823 + 3.94485 NA Intergenic Intergenic -37716 NM_016626 51320 Hs.465144 NM_016626 HPRD:15255 MEX3C MEX-3C|RKHD2|RNF194 mex-3 RNA binding family member C protein-coding 13-PTNLD9-TUMOR_peak_17912 chr15 87071838 87072042 + 3.94485 NA intron (NM_152336, intron 18 of 23) L1PA2|LINE|L1 -211741 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_4285 chr1 166895377 166895550 + 3.94485 NA intron (NM_199351, intron 7 of 9) intron (NM_199351, intron 7 of 9) 49098 NM_199351 387597 Hs.444835 NM_199351 HPRD:12724 ILDR2 C1orf32|dJ782G3.1 immunoglobulin-like domain containing receptor 2 protein-coding 13-PTNLD9-TUMOR_peak_17728 chr15 78342289 78342476 + 3.94485 NA intron (NM_144572, intron 2 of 12) intron (NM_144572, intron 2 of 12) 27612 NM_144572 23102 Hs.567426 NM_015079 HPRD:08310 TBC1D2B - TBC1 domain family, member 2B protein-coding 13-PTNLD9-TUMOR_peak_17006 chr15 34610932 34611067 + 3.94485 NA promoter-TSS (NM_005135) promoter-TSS (NM_005135) 22 NM_005135 9990 Hs.510939 NM_005135 SLC12A6 ACCPN|KCC3|KCC3A|KCC3B solute carrier family 12 (potassium/chloride transporter), member 6 protein-coding 13-PTNLD9-TUMOR_peak_40175 chr5 1130431 1130525 + 3.94303 NA Intergenic Intergenic -18306 NM_006598 10723 Hs.172613 NM_006598 HPRD:09221 SLC12A7 KCC4 solute carrier family 12 (potassium/chloride transporter), member 7 protein-coding 13-PTNLD9-TUMOR_peak_40388 chr5 14663962 14664074 + 3.93836 NA promoter-TSS (NM_138348) promoter-TSS (NM_138348) -765 NM_138348 90268 Hs.406335 NM_138348 HPRD:14266 OTULIN FAM105B|GUM OTU deubiquitinase with linear linkage specificity protein-coding 13-PTNLD9-TUMOR_peak_3618 chr1 151476783 151476877 + 3.93292 NA Intergenic Intergenic -7032 NM_020770 57530 Hs.591464 NM_020770 HPRD:10827 CGN - cingulin protein-coding 13-PTNLD9-TUMOR_peak_36537 chr3 157827890 157827984 + 3.93292 NA promoter-TSS (NM_001271838) promoter-TSS (NM_001271838) 96 NM_016625 51319 Hs.591283 NM_016625 HPRD:18006 RSRC1 SFRS21|SRrp53 arginine/serine-rich coiled-coil 1 protein-coding 13-PTNLD9-TUMOR_peak_7335 chr10 50615746 50615840 + 3.93240 NA Intergenic Intergenic -11731 NM_001276451 644168 Hs.534530 NM_001080520 DRGX DRG11|PRRXL1 dorsal root ganglia homeobox protein-coding 13-PTNLD9-TUMOR_peak_11692 chr11 131118562 131118743 + 3.93240 NA Intergenic Intergenic -121719 NM_001048209 50863 Hs.504352 NM_016522 HPRD:06398 NTM HNT|IGLON2|NTRI neurotrimin protein-coding 13-PTNLD9-TUMOR_peak_42339 chr5 140105661 140105861 + 3.93240 NA promoter-TSS (NR_026705) promoter-TSS (NR_026705) 17 NR_026705 56662 NR_026705 ENSG00000202515 VTRNA1-3 HVG3|VAULTRC3|VR3|hvg-3 vault RNA 1-3 ncRNA 13-PTNLD9-TUMOR_peak_43764 chr6 11144736 11144835 + 3.93240 NA Intergenic Intergenic -32714 NM_207582 405754 Hs.631996 NM_207582 HPRD:13648 ERVFRD-1 ERVFRDE1|GLLL6191|HERV-FRD|HERV-W/FRD|UNQ6191|envFRD endogenous retrovirus group FRD, member 1 protein-coding 13-PTNLD9-TUMOR_peak_31958 chr21 16932880 16933155 + 3.93240 NA Intergenic MLT2F|LTR|ERVL -169327 NM_013396 29761 Hs.743994 NM_013396 HPRD:05296 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 13-PTNLD9-TUMOR_peak_46360 chr6 154975129 154975231 + 3.93240 NA Intergenic Intergenic -79332 NM_001286188 22828 Hs.591329 NM_014892 HPRD:11487 SCAF8 RBM16 SR-related CTD-associated factor 8 protein-coding 13-PTNLD9-TUMOR_peak_34312 chr3 40428627 40428742 + 3.93240 NA promoter-TSS (NM_001291961) promoter-TSS (NM_001291961) 37 NM_001248 956 Hs.441145 NM_001248 HPRD:16014 ENTPD3 CD39L3|HB6|NTPDase-3 ectonucleoside triphosphate diphosphohydrolase 3 protein-coding 13-PTNLD9-TUMOR_peak_11590 chr11 128212504 128212621 + 3.93240 NA Intergenic Intergenic 179643 NM_005238 2113 Hs.369438 NM_005238 HPRD:01260 ETS1 ETS-1|EWSR2|p54 v-ets avian erythroblastosis virus E26 oncogene homolog 1 protein-coding 13-PTNLD9-TUMOR_peak_6356 chr10 5438679 5438806 + 3.93240 NA intron (NM_001171864, intron 2 of 3) intron (NM_001171864, intron 2 of 3) 8051 NM_001171864 79861 Hs.163079 NM_024803 HPRD:08640 TUBAL3 - tubulin, alpha-like 3 protein-coding 13-PTNLD9-TUMOR_peak_40563 chr5 33400964 33401078 + 3.93240 NA Intergenic THE1D|LTR|ERVL-MaLR -39781 NM_001258437 6897 Hs.481860 NM_152295 HPRD:01762 TARS ThrRS threonyl-tRNA synthetase protein-coding 13-PTNLD9-TUMOR_peak_43904 chr6 15037318 15037412 + 3.93240 NA Intergenic Intergenic -208841 NM_004973 3720 Hs.269059 NM_004973 HPRD:03355 JARID2 JMJ jumonji, AT rich interactive domain 2 protein-coding 13-PTNLD9-TUMOR_peak_17856 chr15 84841458 84841604 + 3.93028 NA intron (NM_001243531, intron 1 of 2) CpG 289 NM_001243531 100505679 Hs.726826 NM_001243531 ENSG00000259511 UBE2Q2L - ubiquitin-conjugating enzyme E2Q family member 2-like protein-coding 13-PTNLD9-TUMOR_peak_32932 chr22 24199930 24200024 + 3.93028 NA promoter-TSS (NM_001024939) promoter-TSS (NM_001024939) -63 NM_001024939 66035 Hs.661910 NM_030807 HPRD:11571 SLC2A11 GLUT10|GLUT11 solute carrier family 2 (facilitated glucose transporter), member 11 protein-coding 13-PTNLD9-TUMOR_peak_49533 chr7 144539461 144539611 + 3.92704 NA Intergenic MER92C|LTR|ERV1 -6390 NM_001042482 27010 Hs.660232 NM_022445 HPRD:06967 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 13-PTNLD9-TUMOR_peak_45004 chr6 41904115 41904356 + 3.92704 NA intron (NM_001287434, intron 4 of 4) intron (NM_001287434, intron 4 of 4) 5351 NM_001760 896 Hs.534307 NM_001760 HPRD:00452 CCND3 - cyclin D3 protein-coding 13-PTNLD9-TUMOR_peak_47922 chr7 73548792 73548916 + 3.92227 NA Intergenic MER41B|LTR|ERV1 -39852 NM_031992 7458 Hs.520943 NM_022170 HPRD:11940 EIF4H WBSCR1|WSCR1|eIF-4H eukaryotic translation initiation factor 4H protein-coding 13-PTNLD9-TUMOR_peak_47144 chr7 29149586 29149680 + 3.92227 NA intron (NM_031311, intron 3 of 12) intron (NM_031311, intron 3 of 12) -15016 NR_120523 101928168 Hs.666750 NR_120523 LOC101928168 - uncharacterized LOC101928168 ncRNA 13-PTNLD9-TUMOR_peak_36932 chr3 183165312 183165568 + 3.92227 NA promoter-TSS (NR_038302) promoter-TSS (NR_038302) 1 NR_038301 100505687 Hs.551751 NR_038301 ENSG00000240024 LINC00888 - long intergenic non-protein coding RNA 888 ncRNA 13-PTNLD9-TUMOR_peak_1091 chr1 36030400 36030494 + 3.92227 NA intron (NM_001014841, intron 6 of 6) intron (NM_001014841, intron 6 of 6) 7054 NM_001014839 23154 Hs.121870 NM_014284 HPRD:10530 NCDN - neurochondrin protein-coding 13-PTNLD9-TUMOR_peak_25518 chr19 52206100 52206278 + 3.92171 NA intron (NR_024330, intron 3 of 7) intron (NR_024330, intron 3 of 7) -9480 NR_108100 102238594 Hs.640185 NR_108100 SPACA6P-AS LINC01129 SPACA6P antisense RNA ncRNA 13-PTNLD9-TUMOR_peak_45249 chr6 47669190 47669284 + 3.92171 NA intron (NM_153838, intron 1 of 9) intron (NM_153838, intron 1 of 9) 2948 NM_153838 221393 Hs.150131 NM_153838 HPRD:17057 GPR115 PGR18 G protein-coupled receptor 115 protein-coding 13-PTNLD9-TUMOR_peak_4370 chr1 170054434 170054577 + 3.91848 NA Intergenic Intergenic -10626 NM_001204516 22920 Hs.433442 NM_014970 HPRD:03499 KIFAP3 FLA3|KAP-1|KAP-3|KAP3|SMAP|Smg-GDS|dJ190I16.1 kinesin-associated protein 3 protein-coding 13-PTNLD9-TUMOR_peak_49606 chr7 149916778 149916872 + 3.91848 NA Intergenic CpG 83244 NM_001164459 653857 Hs.664579 NM_001164458 ENSG00000106526 ACTR3C ARP11 ARP3 actin-related protein 3 homolog C (yeast) protein-coding 13-PTNLD9-TUMOR_peak_15787 chr14 53684173 53684376 + 3.91848 NA Intergenic LTR12C|LTR|ERV1 64202 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 13-PTNLD9-TUMOR_peak_36369 chr3 149901883 149902161 + 3.91848 NA Intergenic Intergenic -54284 NR_110168 101927992 Hs.534682 NR_110167 ENSG00000244541 LINC01213 - long intergenic non-protein coding RNA 1213 ncRNA 13-PTNLD9-TUMOR_peak_28865 chr2 160373043 160373158 + 3.91848 NA intron (NM_001289975, intron 2 of 35) intron (NM_001289975, intron 2 of 35) -98705 NR_110588 643072 Hs.632541 NR_110587 LOC643072 - uncharacterized LOC643072 ncRNA 13-PTNLD9-TUMOR_peak_38405 chr4 53405083 53405183 + 3.91848 NA Intergenic L1HS|LINE|L1 117626 NM_001134223 64854 Hs.7966 NM_022832 HPRD:07507 USP46 - ubiquitin specific peptidase 46 protein-coding 13-PTNLD9-TUMOR_peak_18718 chr16 21059469 21059563 + 3.91848 NA intron (NM_017539, intron 31 of 61) L1PA2|LINE|L1 -110396 NM_020422 57146 Hs.258212 NM_020422 HPRD:17428 TMEM159 PROMETHIN transmembrane protein 159 protein-coding 13-PTNLD9-TUMOR_peak_2023 chr1 62744968 62745062 + 3.91848 NA intron (NM_181712, intron 2 of 9) intron (NM_181712, intron 2 of 9) 40068 NM_181712 163782 Hs.283398 NM_181712 HPRD:14109 KANK4 ANKRD38|dJ1078M7.1 KN motif and ankyrin repeat domains 4 protein-coding 13-PTNLD9-TUMOR_peak_33886 chr3 14339666 14339766 + 3.91848 NA Intergenic MIR|SINE|MIR 54352 NR_110135 101927565 Hs.306905 NR_110135 ENSG00000251576 LINC01267 - long intergenic non-protein coding RNA 1267 ncRNA 13-PTNLD9-TUMOR_peak_646 chr1 22658790 22658978 + 3.91848 NA Intergenic Intergenic -119460 NM_014870 9923 Hs.418966 NM_014870 HPRD:11086 ZBTB40 ZNF923 zinc finger and BTB domain containing 40 protein-coding 13-PTNLD9-TUMOR_peak_20163 chr16 89988892 89989028 + 3.91434 NA promoter-TSS (NM_006086) promoter-TSS (NM_006086) 543 NM_001197181 10381 Hs.511743 NM_006086 HPRD:04044 TUBB3 CDCBM|CDCBM1|CFEOM3|CFEOM3A|FEOM3|TUBB4|beta-4 tubulin, beta 3 class III protein-coding 13-PTNLD9-TUMOR_peak_37876 chr4 8190946 8191040 + 3.91297 NA Intergenic Intergenic -10067 NM_018986 54436 Hs.479116 NM_018986 HPRD:11556 SH3TC1 - SH3 domain and tetratricopeptide repeats 1 protein-coding 13-PTNLD9-TUMOR_peak_23595 chr19 1063149 1063305 + 3.91297 NA intron (NM_019112, intron 42 of 46) intron (NM_019112, intron 42 of 46) -2695 NM_001258328 23526 Hs.465521 NM_012292 HPRD:03097 HMHA1 ARHGAP45|HA-1|HLA-HA1 histocompatibility (minor) HA-1 protein-coding 13-PTNLD9-TUMOR_peak_2704 chr1 107680870 107681028 + 3.91297 NA Intergenic Intergenic -1680 NM_001113226 22854 Hs.732535 NM_014917 HPRD:16389 NTNG1 Lmnt1 netrin G1 protein-coding 13-PTNLD9-TUMOR_peak_17647 chr15 74671233 74671408 + 3.90843 NA Intergenic Intergenic -11239 NM_000781 1583 Hs.303980 NM_000781 HPRD:00326 CYP11A1 CYP11A|CYPXIA1|P450SCC cytochrome P450, family 11, subfamily A, polypeptide 1 protein-coding 13-PTNLD9-TUMOR_peak_3281 chr1 145144554 145144718 + 3.90454 NA intron (NM_001277444, intron 20 of 24) intron (NM_001277444, intron 20 of 24) 48229 NM_004892 9554 Hs.632438 NM_004892 SEC22B ERS-24|SEC22L1 SEC22 vesicle trafficking protein homolog B (S. cerevisiae) (gene/pseudogene) protein-coding 13-PTNLD9-TUMOR_peak_3002 chr1 116920582 116920690 + 3.90454 NA intron (NM_001160233, intron 1 of 22) intron (NM_001160233, intron 1 of 22) 4147 NM_001160233 476 Hs.371889 NM_000701 HPRD:01662 ATP1A1 - ATPase, Na+/K+ transporting, alpha 1 polypeptide protein-coding 13-PTNLD9-TUMOR_peak_40108 chr4 191010535 191010689 + 3.90389 NA Intergenic CpG 24955 NR_121644 100419743 NR_121644 DBET DBE-T D4Z4 binding element transcript (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_45507 chr6 74230126 74230260 + 3.90389 NA intron (NM_001402, intron 1 of 7) CpG 562 NM_001402 1915 Hs.535192 NM_001402 HPRD:00559 EEF1A1 CCS-3|CCS3|EE1A1|EEF-1|EEF1A|EF-Tu|EF1A|GRAF-1EF|HNGC:16303|LENG7|PTI1|eEF1A-1 eukaryotic translation elongation factor 1 alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_14389 chr13 20965799 20966028 + 3.90158 NA Intergenic Intergenic 42072 NR_039721 100616304 NR_039721 MIR4499 - microRNA 4499 ncRNA 13-PTNLD9-TUMOR_peak_46343 chr6 152280413 152280566 + 3.90158 NA intron (NM_001291230, intron 5 of 8) intron (NM_001291230, intron 5 of 8) 151675 NM_000125 2099 Hs.208124 NM_000125 HPRD:00589 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_55891 chrX 53316795 53316911 + 3.90158 NA intron (NM_001111125, intron 2 of 14) intron (NM_001111125, intron 2 of 14) -6057 NM_015075 23096 Hs.496138 NM_015075 HPRD:10012 IQSEC2 BRAG1|MRX1 IQ motif and Sec7 domain 2 protein-coding 13-PTNLD9-TUMOR_peak_23150 chr18 47074627 47074796 + 3.90158 NA Intergenic L2a|LINE|L2 -13716 NM_006033 9388 Hs.465102 NM_006033 HPRD:04730 LIPG EDL|EL|PRO719 lipase, endothelial protein-coding 13-PTNLD9-TUMOR_peak_13873 chr12 112261812 112261993 + 3.90158 NA Intergenic HERVK3-int|LTR|ERVK -18130 NM_003668 8550 Hs.333120 NM_003668 HPRD:09467 MAPKAPK5 MAPKAP-K5|MK-5|MK5|PRAK mitogen-activated protein kinase-activated protein kinase 5 protein-coding 13-PTNLD9-TUMOR_peak_10244 chr11 65463404 65463513 + 3.90158 NA Intergenic Intergenic -16015 NM_006388 10524 Hs.397010 NM_006388 HPRD:03245 KAT5 ESA1|HTATIP|HTATIP1|PLIP|TIP|TIP60|ZC2HC5|cPLA2 K(lysine) acetyltransferase 5 protein-coding 13-PTNLD9-TUMOR_peak_55829 chrX 48755331 48755506 + 3.90158 NA promoter-TSS (NM_001167992) promoter-TSS (NM_001167992) 8 NM_001167947 10245 Hs.30570 NM_005834 HPRD:02218 TIMM17B DXS9822|TIM17B translocase of inner mitochondrial membrane 17 homolog B (yeast) protein-coding 13-PTNLD9-TUMOR_peak_35184 chr3 99761230 99761356 + 3.90158 NA intron (NM_182909, intron 1 of 5) intron (NM_182909, intron 1 of 5) -44234 NR_031662 100313938 NR_031662 miRBase:MI0006395 MIR548G MIRN548G|hsa-mir-548g microRNA 548g ncRNA 13-PTNLD9-TUMOR_peak_33859 chr3 13812022 13812169 + 3.90158 NA Intergenic Intergenic 109523 NM_004625 7476 Hs.72290 NM_004625 WNT7A - wingless-type MMTV integration site family, member 7A protein-coding 13-PTNLD9-TUMOR_peak_25111 chr19 45150779 45150873 + 3.90158 NA exon (NM_001135768, exon 2 of 8) exon (NM_001135768, exon 2 of 8) 3728 NM_006505 5817 Hs.171844 NM_006505 HPRD:01434 PVR CD155|HVED|NECL5|Necl-5|PVS|TAGE4 poliovirus receptor protein-coding 13-PTNLD9-TUMOR_peak_4650 chr1 181827507 181827603 + 3.90158 NA Intergenic L3|LINE|CR1 203292 NM_001009992 127665 Hs.684328 NM_001009992 HPRD:18361 ZNF648 - zinc finger protein 648 protein-coding 13-PTNLD9-TUMOR_peak_10131 chr11 63775363 63775536 + 3.89961 NA intron (NM_014067, intron 4 of 10) CpG 22124 NM_017670 55611 Hs.473788 NM_017670 OTUB1 OTB1|OTU1 OTU deubiquitinase, ubiquitin aldehyde binding 1 protein-coding 13-PTNLD9-TUMOR_peak_11941 chr12 6193996 6194135 + 3.89955 NA intron (NM_000552, intron 6 of 51) intron (NM_000552, intron 6 of 51) 39771 NM_000552 7450 Hs.440848 NM_000552 HPRD:01906 VWF F8VWF|VWD von Willebrand factor protein-coding 13-PTNLD9-TUMOR_peak_6473 chr10 11916712 11916934 + 3.89955 NA intron (NR_038222, intron 2 of 5) intron (NR_038222, intron 2 of 5) 19886 NR_038222 219731 Hs.576787 NR_038222 ENSG00000225778 PROSER2-AS1 - PROSER2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_4472 chr1 175115849 175115946 + 3.89243 NA intron (NM_022093, intron 18 of 18) intron (NM_022093, intron 18 of 18) 46052 NM_001162895 9674 Hs.518138 NM_014656 HPRD:13776 KIAA0040 - KIAA0040 protein-coding 13-PTNLD9-TUMOR_peak_45851 chr6 108286974 108287114 + 3.89243 NA Intergenic Intergenic -7562 NM_007214 11231 Hs.26904 NM_007214 HPRD:09783 SEC63 DNAJC23|ERdj2|PRO2507|SEC63L SEC63 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_6887 chr10 32734946 32735139 + 3.89243 NA promoter-TSS (NM_145023) promoter-TSS (NM_145023) 32 NR_109826 79741 Hs.585464 NM_024688 HPRD:10698 CCDC7 BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 13-PTNLD9-TUMOR_peak_12470 chr12 32552763 32553033 + 3.89243 NA Intergenic CpG -102143 NM_139241 121512 Hs.117835 NM_139241 HPRD:16891 FGD4 CMT4H|FRABP|ZFYVE6 FYVE, RhoGEF and PH domain containing 4 protein-coding 13-PTNLD9-TUMOR_peak_7380 chr10 52526689 52526783 + 3.89243 NA Intergenic Intergenic 27048 NM_001079516 653308 Hs.710005 NM_001079516 ENSG00000204147 ASAH2B ASAH2C|ASAH2L|bA449O16.3 N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2B protein-coding 13-PTNLD9-TUMOR_peak_33099 chr22 30807915 30808051 + 3.89243 NA intron (NM_012429, intron 8 of 11) L2c|LINE|L2 -13628 NM_016498 51537 Hs.713636 NM_016498 HPRD:17612 MTFP1 MTP18 mitochondrial fission process 1 protein-coding 13-PTNLD9-TUMOR_peak_45874 chr6 109572141 109572243 + 3.89243 NA intron (NM_001277339, intron 3 of 9) L1PA2|LINE|L1 14375 NM_001277339 100996634 NM_001277339 LOC100996634 - transmembrane protein FLJ37396 protein-coding 13-PTNLD9-TUMOR_peak_49439 chr7 142257829 142257923 + 3.89217 NA Intergenic AluSz|SINE|Alu -116255 NM_001190487 100463482 NM_001190487 ENSG00000270672 MTRNR2L6 HN6 MT-RNR2-like 6 protein-coding 13-PTNLD9-TUMOR_peak_49654 chr7 150946303 150946550 + 3.88993 NA promoter-TSS (NM_001003801) promoter-TSS (NM_001003801) -677 NM_001003801 6604 Hs.647067 NM_003078 HPRD:03440 SMARCD3 BAF60C|CRACD3|Rsc6p SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 protein-coding 13-PTNLD9-TUMOR_peak_46721 chr7 2563148 2563349 + 3.88993 NA intron (NM_001040167, intron 1 of 7) intron (NM_001040167, intron 1 of 7) -3460 NR_039791 100616116 NR_039791 MIR4648 - microRNA 4648 ncRNA 13-PTNLD9-TUMOR_peak_56726 chrX 153775005 153775333 + 3.88396 NA promoter-TSS (NM_001099857) promoter-TSS (NM_001099857) 64 NM_000402 2539 Hs.461047 NM_000402 HPRD:02377 G6PD G6PD1 glucose-6-phosphate dehydrogenase protein-coding 13-PTNLD9-TUMOR_peak_32384 chr21 42792310 42792499 + 3.87631 NA promoter-TSS (NM_001144925) promoter-TSS (NM_001144925) -81 NM_001144925 4599 Hs.517307 NM_002462 HPRD:00919 MX1 IFI-78K|IFI78|MX|MxA MX dynamin-like GTPase 1 protein-coding 13-PTNLD9-TUMOR_peak_48448 chr7 98928324 98928423 + 3.87191 NA intron (NM_006409, intron 1 of 9) intron (NM_006409, intron 1 of 9) 4877 NM_006409 10552 Hs.124126 NM_006409 HPRD:07252 ARPC1A Arc40|HEL-68|SOP2Hs|SOP2L actin related protein 2/3 complex, subunit 1A, 41kDa protein-coding 13-PTNLD9-TUMOR_peak_5663 chr1 227004347 227004508 + 3.87172 NA Intergenic Intergenic -53846 NM_012486 5664 Hs.25363 NM_000447 HPRD:02860 PSEN2 AD3L|AD4|CMD1V|PS2|STM2 presenilin 2 protein-coding 13-PTNLD9-TUMOR_peak_13780 chr12 109539858 109540000 + 3.87172 NA intron (NM_080911, intron 4 of 6) MER20|DNA|hAT-Charlie 4006 NM_003362 7374 Hs.191334 NM_003362 HPRD:01881 UNG DGU|HIGM4|HIGM5|UDG|UNG1|UNG15|UNG2 uracil-DNA glycosylase protein-coding 13-PTNLD9-TUMOR_peak_47400 chr7 46013817 46014125 + 3.87172 NA Intergenic Intergenic -53100 NM_001013398 3486 Hs.450230 NM_000598 HPRD:00899 IGFBP3 BP-53|IBP3 insulin-like growth factor binding protein 3 protein-coding 13-PTNLD9-TUMOR_peak_25519 chr19 52206439 52206636 + 3.87148 NA non-coding (NR_024330, exon 5 of 8) non-coding (NR_024330, exon 5 of 8) -9828 NR_108100 102238594 Hs.640185 NR_108100 SPACA6P-AS LINC01129 SPACA6P antisense RNA ncRNA 13-PTNLD9-TUMOR_peak_15310 chr14 23341904 23341998 + 3.87148 NA exon (NM_014045, exon 2 of 7) exon (NM_014045, exon 2 of 7) 991 NM_014045 26020 Hs.525232 NM_014045 HPRD:14311 LRP10 LRP9|MST087 low density lipoprotein receptor-related protein 10 protein-coding 13-PTNLD9-TUMOR_peak_54514 chr9 116756541 116756636 + 3.87148 NA intron (NM_133374, intron 3 of 13) intron (NM_133374, intron 3 of 13) 84164 NM_001633 259 Hs.436911 NM_001633 HPRD:01467 AMBP A1M|EDC1|HCP|HI30|IATIL|ITI|ITIL|ITILC|UTI alpha-1-microglobulin/bikunin precursor protein-coding 13-PTNLD9-TUMOR_peak_22905 chr18 32289203 32289377 + 3.87148 NA promoter-TSS (NM_001198941) promoter-TSS (NM_001198941) -906 NM_032978 1837 Hs.643454 NM_001390 HPRD:03141 DTNA D18S892E|DRP3|DTN|DTN-A|LVNC1 dystrobrevin, alpha protein-coding 13-PTNLD9-TUMOR_peak_31545 chr20 51938299 51938415 + 3.87148 NA intron (NM_173485, intron 2 of 2) MER102a|DNA|hAT-Charlie 136535 NM_001193421 128553 Hs.473117 NM_173485 HPRD:10730 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 13-PTNLD9-TUMOR_peak_22925 chr18 33093702 33093808 + 3.87148 NA Intergenic Intergenic -15800 NM_194281 125476 Hs.464903 NM_194281 HPRD:10719 INO80C C18orf37|IES6|hIes6 INO80 complex subunit C protein-coding 13-PTNLD9-TUMOR_peak_12459 chr12 32143132 32143256 + 3.87148 NA intron (NM_018169, intron 5 of 5) intron (NM_018169, intron 5 of 5) 3608 NR_046944 100873778 NR_046944 RNU6-78P RNU6-78 RNA, U6 small nuclear 78, pseudogene snRNA 13-PTNLD9-TUMOR_peak_17255 chr15 49170196 49170521 + 3.87148 NA promoter-TSS (NM_014335) promoter-TSS (NM_014335) 68 NM_014335 23741 Hs.255973 NM_014335 HPRD:06907 EID1 C15orf3|CRI1|EID-1|IRO45620|PTD014|RBP21 EP300 interacting inhibitor of differentiation 1 protein-coding 13-PTNLD9-TUMOR_peak_17900 chr15 86026276 86026370 + 3.87148 NA intron (NM_007200, intron 1 of 36) intron (NM_007200, intron 1 of 36) 102476 NM_006738 11214 Hs.459211 NM_006738 HPRD:05253 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A kinase (PRKA) anchor protein 13 protein-coding 13-PTNLD9-TUMOR_peak_30876 chr20 34035145 34035239 + 3.87148 NA Intergenic Intergenic -8031 NM_007186 11190 Hs.443976 NM_007186 HPRD:09877 CEP250 C-NAP1|CEP2|CNAP1 centrosomal protein 250kDa protein-coding 13-PTNLD9-TUMOR_peak_3697 chr1 153031450 153031628 + 3.87148 NA Intergenic Intergenic -1551 NM_005988 6700 Hs.355542 NM_005988 HPRD:01649 SPRR2A - small proline-rich protein 2A protein-coding 13-PTNLD9-TUMOR_peak_722 chr1 25031898 25032058 + 3.87148 NA Intergenic Intergenic -39782 NM_013943 25932 Hs.440544 NM_013943 HPRD:05943 CLIC4 CLIC4L|H1|MTCLIC|huH1|p64H1 chloride intracellular channel 4 protein-coding 13-PTNLD9-TUMOR_peak_47119 chr7 27650864 27650995 + 3.87148 NA intron (NM_152740, intron 4 of 7) intron (NM_152740, intron 4 of 7) -4664 NR_122122 790953 Hs.571330 NR_122122 TSL - testis-expressed, seven-twelve, leukemia ncRNA 13-PTNLD9-TUMOR_peak_45333 chr6 53389339 53389496 + 3.87148 NA intron (NM_001197115, intron 1 of 14) intron (NM_001197115, intron 1 of 14) 20510 NM_001197115 2729 Hs.654465 NM_001498 HPRD:06032 GCLC GCL|GCS|GLCL|GLCLC glutamate-cysteine ligase, catalytic subunit protein-coding 13-PTNLD9-TUMOR_peak_22924 chr18 33093217 33093336 + 3.87148 NA Intergenic Intergenic -15321 NM_194281 125476 Hs.464903 NM_194281 HPRD:10719 INO80C C18orf37|IES6|hIes6 INO80 complex subunit C protein-coding 13-PTNLD9-TUMOR_peak_44915 chr6 39164502 39164607 + 3.87148 NA intron (NM_003740, intron 1 of 4) intron (NM_003740, intron 1 of 4) 32697 NM_003740 8645 Hs.444448 NM_003740 HPRD:04604 KCNK5 K2p5.1|TASK-2|TASK2 potassium channel, subfamily K, member 5 protein-coding 13-PTNLD9-TUMOR_peak_8098 chr10 99078806 99079097 + 3.87148 NA promoter-TSS (NM_005479) promoter-TSS (NM_005479) -71 NM_005479 10023 Hs.126057 NM_005479 HPRD:03935 FRAT1 - frequently rearranged in advanced T-cell lymphomas 1 protein-coding 13-PTNLD9-TUMOR_peak_10529 chr11 71699265 71699365 + 3.86674 NA intron (NM_001300926, intron 4 of 6) intron (NM_001300926, intron 4 of 6) -10643 NM_001039660 10068 Hs.591967 NM_005699 HPRD:04984 IL18BP IL18BPa interleukin 18 binding protein protein-coding 13-PTNLD9-TUMOR_peak_24153 chr19 13983865 13984049 + 3.86674 NA Intergenic CpG -1556 NR_029613 406957 NR_029613 miRBase:MI0000271 MIR181C MIRN181C|mir-181c microRNA 181c ncRNA 13-PTNLD9-TUMOR_peak_18112 chr15 101835654 101835796 + 3.86674 NA promoter-TSS (NM_003090) promoter-TSS (NM_003090) -265 NM_003090 6627 Hs.528763 NM_003090 HPRD:04629 SNRPA1 Lea1 small nuclear ribonucleoprotein polypeptide A' protein-coding 13-PTNLD9-TUMOR_peak_16855 chr15 27736483 27736645 + 3.86674 NA intron (NM_033223, intron 6 of 9) intron (NM_033223, intron 6 of 9) -330098 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 LOC101928869 - uncharacterized LOC101928869 ncRNA 13-PTNLD9-TUMOR_peak_54302 chr9 107769477 107769571 + 3.86674 NA Intergenic Intergenic -78997 NM_005502 19 Hs.659274 NM_005502 HPRD:02501 ABCA1 ABC-1|ABC1|CERP|HDLDT1|TGD ATP-binding cassette, sub-family A (ABC1), member 1 protein-coding 13-PTNLD9-TUMOR_peak_34033 chr3 20368193 20368289 + 3.86674 NA Intergenic Tigger3b|DNA|TcMar-Tigger -15719 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 13-PTNLD9-TUMOR_peak_44415 chr6 29813301 29813452 + 3.86674 NA Intergenic LTR10F|LTR|ERV1 18620 NM_002127 3135 Hs.512152 NM_002127 HPRD:00834 HLA-G MHC-G major histocompatibility complex, class I, G protein-coding 13-PTNLD9-TUMOR_peak_20588 chr17 18379793 18380027 + 3.86674 NA promoter-TSS (NM_001040078) promoter-TSS (NM_001040078) -189 NM_001040078 654346 Hs.462402 NM_001040078 ENSG00000171916 LGALS9C - lectin, galactoside-binding, soluble, 9C protein-coding 13-PTNLD9-TUMOR_peak_3432 chr1 148177074 148177324 + 3.85483 NA intron (NR_102404, intron 6 of 18).2 intron (NR_102404, intron 6 of 18).2 25337 NM_001144032 730262 NM_001144032 PPIAL4E COAS2 peptidylprolyl isomerase A (cyclophilin A)-like 4E protein-coding 13-PTNLD9-TUMOR_peak_13177 chr12 65563798 65563909 + 3.85483 NA exon (NM_001167614, exon 1 of 13) exon (NM_001167614, exon 1 of 13) 502 NM_001167614 23592 Hs.744150 NM_014319 HPRD:09704 LEMD3 MAN1 LEM domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_12001 chr12 6806153 6806343 + 3.85399 NA intron (NM_153685, intron 3 of 5) L2c|LINE|L2 3348 NM_001244015 196500 Hs.44067 NM_153685 HPRD:13205 PIANP C12orf53|PANP|leda-1 PILR alpha associated neural protein protein-coding 13-PTNLD9-TUMOR_peak_15681 chr14 50065577 50065703 + 3.85399 NA non-coding (NR_037793, exon 1 of 5) non-coding (NR_037793, exon 1 of 5) 225 NR_037792 122769 Hs.451090 NM_152329 HPRD:15164 LRR1 4-1BBLRR|LRR-1|PPIL5 leucine rich repeat protein 1 protein-coding 13-PTNLD9-TUMOR_peak_2780 chr1 110198647 110198747 + 3.85399 NA promoter-TSS (NM_000850) promoter-TSS (NM_000850) -1 NM_147148 2948 Hs.348387 NM_000850 HPRD:00706 GSTM4 GSTM4-4|GTM4 glutathione S-transferase mu 4 protein-coding 13-PTNLD9-TUMOR_peak_25690 chr19 55929665 55929850 + 3.85399 NA Intergenic Intergenic -10432 NM_014501 27338 Hs.396393 NM_014501 HPRD:15603 UBE2S E2-EPF|E2EPF|EPF5 ubiquitin-conjugating enzyme E2S protein-coding 13-PTNLD9-TUMOR_peak_6649 chr10 22418737 22418831 + 3.85399 NA Intergenic L1PA2|LINE|L1 80128 NM_001199938 340900 Hs.450519 NM_001199938 ENSG00000223601 EBLN1 EBLN-1 endogenous Bornavirus-like nucleoprotein 1 protein-coding 13-PTNLD9-TUMOR_peak_53138 chr9 35924736 35924838 + 3.85399 NA Intergenic AluJb|SINE|Alu 15307 NR_024283 158376 Hs.302677 NR_024283 ENSG00000235387 LINC00961 - long intergenic non-protein coding RNA 961 ncRNA 13-PTNLD9-TUMOR_peak_61 chr1 1093327 1093643 + 3.85399 NA Intergenic Intergenic -8999 NR_029639 406984 NR_029639 miRBase:MI0000342 MIR200B MIRN200B microRNA 200b ncRNA 13-PTNLD9-TUMOR_peak_4135 chr1 161171356 161171544 + 3.85362 NA promoter-TSS (NM_001166159) promoter-TSS (NM_001166159) -487 NM_001166159 4720 Hs.173611 NM_004550 HPRD:04285 NDUFS2 CI-49 NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa (NADH-coenzyme Q reductase) protein-coding 13-PTNLD9-TUMOR_peak_48436 chr7 98476457 98476758 + 3.85247 NA intron (NM_001244580, intron 1 of 71) CpG 494 NM_003496 8295 Hs.203952 NM_003496 HPRD:04310 TRRAP PAF350/400|PAF400|STAF40|TR-AP|Tra1 transformation/transcription domain-associated protein protein-coding 13-PTNLD9-TUMOR_peak_29859 chr2 220082676 220082803 + 3.85247 NA intron (NM_005689, intron 1 of 18) intron (NM_005689, intron 1 of 18) 973 NM_005689 10058 Hs.107911 NM_005689 HPRD:09261 ABCB6 ABC|ABC14|DUH3|LAN|MCOPCB7|MTABC3|PRP|umat ATP-binding cassette, sub-family B (MDR/TAP), member 6 protein-coding 13-PTNLD9-TUMOR_peak_41340 chr5 76083201 76083349 + 3.85247 NA Intergenic Intergenic -31558 NM_005242 2150 Hs.744181 NM_005242 HPRD:02960 F2RL1 GPR11|PAR2 coagulation factor II (thrombin) receptor-like 1 protein-coding 13-PTNLD9-TUMOR_peak_7514 chr10 64565669 64565763 + 3.85247 NA 3' UTR (NM_032804, exon 1 of 1) 3' UTR (NM_032804, exon 1 of 1) 1200 NM_032804 84890 Hs.99821 NM_032804 HPRD:12566 ADO C10orf22 2-aminoethanethiol (cysteamine) dioxygenase protein-coding 13-PTNLD9-TUMOR_peak_16962 chr15 32726605 32726868 + 3.84500 NA intron (NR_026858, intron 2 of 4).2 CpG 329 NR_026859 89837 Hs.510848 NR_026859 ENSG00000178081 ULK4P3 D-X|FAM7A3 ULK4 pseudogene 3 pseudo 13-PTNLD9-TUMOR_peak_49449 chr7 142480178 142480307 + 3.84500 NA intron (NR_001296, intron 2 of 4) intron (NR_001296, intron 2 of 4) 334 NM_002770 5645 Hs.449281 NM_002770 PRSS2 TRY2|TRY8|TRYP2 protease, serine, 2 (trypsin 2) protein-coding 13-PTNLD9-TUMOR_peak_21443 chr17 48217451 48217545 + 3.84114 NA exon (NM_032595, exon 5 of 10) exon (NM_032595, exon 5 of 10) -10252 NM_001257359 201191 Hs.567769 NM_174920 HPRD:14127 SAMD14 - sterile alpha motif domain containing 14 protein-coding 13-PTNLD9-TUMOR_peak_47764 chr7 66417748 66417888 + 3.84114 NA intron (NM_017994, intron 5 of 6) intron (NM_017994, intron 5 of 6) 31615 NM_017994 55069 Hs.488478 NM_017994 HPRD:08541 TMEM248 C7orf42 transmembrane protein 248 protein-coding 13-PTNLD9-TUMOR_peak_17339 chr15 57798342 57798436 + 3.84114 NA intron (NM_032866, intron 8 of 18) intron (NM_032866, intron 8 of 18) -85713 NR_104368 145781 Hs.437256 NM_001018090 GCOM1 GRINL1A|Gcom2|MYZAP|MYZAP-POLR2M|gcom GRINL1A complex locus 1 protein-coding 13-PTNLD9-TUMOR_peak_29759 chr2 214053037 214053186 + 3.84114 NA Intergenic Intergenic -36778 NM_001079526 22807 Hs.604950 NM_016260 HPRD:05872 IKZF2 ANF1A2|HELIOS|ZNF1A2|ZNFN1A2 IKAROS family zinc finger 2 (Helios) protein-coding 13-PTNLD9-TUMOR_peak_52725 chr9 7967941 7968139 + 3.84114 NA Intergenic MER74A|LTR|ERVL -168241 NM_033428 90871 Hs.7517 NM_033428 HPRD:12939 TMEM261 C9orf123 transmembrane protein 261 protein-coding 13-PTNLD9-TUMOR_peak_42854 chr5 159626447 159626598 + 3.84114 NA intron (NM_001130958, intron 2 of 6) intron (NM_001130958, intron 2 of 6) 474 NM_001040442 2172 Hs.519719 NM_001445 HPRD:02689 FABP6 I-15P|I-BABP|I-BALB|I-BAP|ILBP|ILBP3|ILLBP fatty acid binding protein 6, ileal protein-coding 13-PTNLD9-TUMOR_peak_18145 chr16 521512 521737 + 3.84090 NA intron (NM_014700, intron 3 of 13) intron (NM_014700, intron 3 of 13) -3226 NM_001142272 9727 Hs.531642 NM_014700 HPRD:18521 RAB11FIP3 CART1|Rab11-FIP3 RAB11 family interacting protein 3 (class II) protein-coding 13-PTNLD9-TUMOR_peak_16580 chr14 100760578 100760814 + 3.84090 NA intron (NM_152333, intron 1 of 2) intron (NM_152333, intron 1 of 2) 12188 NM_152333 123096 Hs.578109 NM_152333 HPRD:15360 SLC25A29 C14orf69|CACL|ORNT3 solute carrier family 25 (mitochondrial carnitine/acylcarnitine carrier), member 29 protein-coding 13-PTNLD9-TUMOR_peak_16622 chr14 103144028 103144174 + 3.84090 NA intron (NM_015156, intron 2 of 11) SVA_D|Other|Other 85105 NM_015156 23186 Hs.510521 NM_015156 HPRD:09645 RCOR1 COREST|RCOR REST corepressor 1 protein-coding 13-PTNLD9-TUMOR_peak_51370 chr8 99837622 99837856 + 3.84090 NA intron (NM_001256312, intron 3 of 12) CpG 160 NM_001256313 6788 Hs.492333 NM_006281 HPRD:05433 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 13-PTNLD9-TUMOR_peak_2424 chr1 90308863 90309169 + 3.84090 NA intron (NM_018103, intron 1 of 2) CpG 21536 NM_018103 55144 Hs.482087 NM_018103 HPRD:11287 LRRC8D LRRC5 leucine rich repeat containing 8 family, member D protein-coding 13-PTNLD9-TUMOR_peak_55813 chrX 48349188 48349357 + 3.84090 NA Intergenic Intergenic 14863 NM_177439 24140 Hs.23170 NM_012280 HPRD:06568 FTSJ1 CDLIV|MRX44|MRX9|SPB1|TRMT7 FtsJ RNA methyltransferase homolog 1 (E. coli) protein-coding 13-PTNLD9-TUMOR_peak_961 chr1 32183090 32183184 + 3.83904 NA Intergenic MamGypLTR1a|LTR|Gypsy -13369 NM_001856 1307 Hs.368921 NM_001856 HPRD:00381 COL16A1 447AA collagen, type XVI, alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_47092 chr7 25021340 25021489 + 3.83878 NA Intergenic CpG -1583 NM_015550 26031 Hs.520259 NM_015550 HPRD:09474 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein-like 3 protein-coding 13-PTNLD9-TUMOR_peak_47452 chr7 48128463 48128595 + 3.83625 NA promoter-TSS (NM_001287430) promoter-TSS (NM_001287430) -208 NM_001287429 7378 Hs.488240 NM_003364 HPRD:08932 UPP1 UDRPASE|UP|UPASE|UPP uridine phosphorylase 1 protein-coding 13-PTNLD9-TUMOR_peak_53401 chr9 66513704 66513814 + 3.83390 NA TTS (NR_122076) TTS (NR_122076) 19490 NR_024496 442421 Hs.585349 NR_024496 PTGER4P2-CDK2AP2P2 PTGER4P2 PTGER4P2-CDK2AP2P2 readthrough transcribed pseudogene pseudo 13-PTNLD9-TUMOR_peak_5101 chr1 203561563 203561674 + 3.83257 NA Intergenic Intergenic -34297 NM_001001396 493 Hs.343522 NM_001684 HPRD:00159 ATP2B4 ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x ATPase, Ca++ transporting, plasma membrane 4 protein-coding 13-PTNLD9-TUMOR_peak_35635 chr3 124279595 124279755 + 3.83257 NA intron (NM_001024660, intron 33 of 59) AluJb|SINE|Alu -23831 NM_007064 8997 Hs.8004 NM_003947 HPRD:06859 KALRN ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD kalirin, RhoGEF kinase protein-coding 13-PTNLD9-TUMOR_peak_1706 chr1 48505025 48505179 + 3.83218 NA Intergenic Intergenic -42540 NM_001194986 388630 Hs.61504 NM_001194986 ENSG00000269113 TRABD2B TIKI2 TraB domain containing 2B protein-coding 13-PTNLD9-TUMOR_peak_5658 chr1 226926187 226926419 + 3.83218 NA intron (NM_002221, intron 1 of 7) CpG 573 NM_002221 3707 Hs.528087 NM_002221 HPRD:00942 ITPKB IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37 inositol-trisphosphate 3-kinase B protein-coding 13-PTNLD9-TUMOR_peak_48531 chr7 100230703 100230945 + 3.83218 NA intron (NM_003227, intron 5 of 17) CpG 449 NM_001206855 7036 Hs.544932 NM_003227 HPRD:05282 TFR2 HFE3|TFRC2 transferrin receptor 2 protein-coding 13-PTNLD9-TUMOR_peak_23285 chr18 55888710 55888823 + 3.83218 NA promoter-TSS (NM_001144966) promoter-TSS (NM_001144966) 12 NM_001144966 23327 Hs.185677 NM_015277 HPRD:05903 NEDD4L NEDD4-2|NEDD4.2|RSP5|hNEDD4-2 neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_11351 chr11 117680129 117680257 + 3.83218 NA Intergenic Intergenic -12217 NM_020693 57453 Hs.659513 NM_020693 HPRD:10921 DSCAML1 - Down syndrome cell adhesion molecule like 1 protein-coding 13-PTNLD9-TUMOR_peak_53535 chr9 70648461 70648559 + 3.82317 NA Intergenic TAR1|Satellite|telo -158299 NM_001286836 220869 Hs.355950 NM_001024916 HPRD:14134 CBWD5 DC36 COBW domain containing 5 protein-coding 13-PTNLD9-TUMOR_peak_15952 chr14 61747705 61747799 + 3.82214 NA exon (NM_001017970, exon 1 of 1) exon (NM_001017970, exon 1 of 1) 778 NM_001017970 161291 Hs.146180 NM_001017970 HPRD:18567 TMEM30B CDC50B transmembrane protein 30B protein-coding 13-PTNLD9-TUMOR_peak_45656 chr6 86388881 86389048 + 3.81760 NA promoter-TSS (NR_003038) promoter-TSS (NR_003038) -513 NR_003038 387066 Hs.292457 NR_003038 ENSG00000203875 SNHG5 C6orf160|LINC00044|NCRNA00044|U50HG|bA33E24.2 small nucleolar RNA host gene 5 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_45152 chr6 44354595 44354784 + 3.81760 NA promoter-TSS (NM_001253) promoter-TSS (NM_001253) -562 NM_001253 988 Hs.485471 NM_001253 HPRD:04184 CDC5L CDC5|CDC5-LIKE|CEF1|PCDC5RP|dJ319D22.1 cell division cycle 5-like protein-coding 13-PTNLD9-TUMOR_peak_11054 chr11 102158830 102158983 + 3.81488 NA Intergenic Intergenic -29275 NM_182962 330 Hs.127799 NM_001165 HPRD:03426 BIRC3 AIP1|API2|CIAP2|HAIP1|HIAP1|MALT2|MIHC|RNF49|c-IAP2 baculoviral IAP repeat containing 3 protein-coding 13-PTNLD9-TUMOR_peak_39671 chr4 153902563 153902670 + 3.81488 NA Intergenic Intergenic 38481 NM_033393 85462 Hs.132629 NM_033393 HPRD:13888 FHDC1 - FH2 domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_29011 chr2 169172638 169172896 + 3.81488 NA Intergenic Intergenic -68662 NM_013233 27347 Hs.276271 NM_013233 HPRD:09627 STK39 DCHT|PASK|SPAK serine threonine kinase 39 protein-coding 13-PTNLD9-TUMOR_peak_735 chr1 25664723 25664918 + 3.81488 NA promoter-TSS (NM_014313) promoter-TSS (NM_014313) 31 NM_014313 23585 Hs.705699 NM_014313 HPRD:05636 TMEM50A IFNRC|SMP1 transmembrane protein 50A protein-coding 13-PTNLD9-TUMOR_peak_36792 chr3 176485319 176485458 + 3.81488 NA Intergenic L1M1|LINE|L1 49401 NR_110819 101928684 Hs.639352 NR_110819 ENSG00000228308 LINC01209 - long intergenic non-protein coding RNA 1209 ncRNA 13-PTNLD9-TUMOR_peak_53574 chr9 72628599 72628819 + 3.81488 NA Intergenic Intergenic -29788 NM_153267 256691 Hs.547172 NM_153267 HPRD:14353 MAMDC2 - MAM domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_26826 chr2 47007962 47008188 + 3.81488 NA Intergenic Intergenic -35732 NR_034099 388948 Hs.728895 NR_034099 ENSG00000222005 LINC01118 - long intergenic non-protein coding RNA 1118 ncRNA 13-PTNLD9-TUMOR_peak_45193 chr6 45983213 45983389 + 3.81488 NA 5' UTR (NM_016929, exon 1 of 6) 5' UTR (NM_016929, exon 1 of 6) 325 NM_001256023 53405 Hs.485489 NM_016929 HPRD:06292 CLIC5 MST130|MSTP130 chloride intracellular channel 5 protein-coding 13-PTNLD9-TUMOR_peak_17770 chr15 80326029 80326123 + 3.81488 NA Intergenic Intergenic -25834 NM_001242917 54469 Hs.596679 NM_019006 HPRD:18314 ZFAND6 AWP1|ZA20D3|ZFAND5B zinc finger, AN1-type domain 6 protein-coding 13-PTNLD9-TUMOR_peak_20323 chr17 4848625 4848719 + 3.81231 NA TTS (NM_005022) TTS (NM_005022) 3709 NM_005022 5216 Hs.494691 NM_005022 HPRD:01452 PFN1 ALS18 profilin 1 protein-coding 13-PTNLD9-TUMOR_peak_54185 chr9 100985321 100985425 + 3.81231 NA intron (NR_051978, intron 4 of 11) L2b|LINE|L2 6126 NR_106913 102465514 NR_106913 MIR6854 hsa-mir-6854 microRNA 6854 ncRNA 13-PTNLD9-TUMOR_peak_25189 chr19 47033434 47033647 + 3.81231 NA intron (NM_001205281, intron 1 of 3) L2b|LINE|L2 -34371 NM_020709 57469 Hs.7193 NM_020709 ENSG00000204851 PNMAL2 - paraneoplastic Ma antigen family-like 2 protein-coding 13-PTNLD9-TUMOR_peak_6363 chr10 5589883 5589984 + 3.81231 NA Intergenic Intergenic -21724 NR_120497 100132159 Hs.239600 NR_120496 CALML3-AS1 - CALML3 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_43409 chr6 1205510 1205696 + 3.81191 NA Intergenic Intergenic -104036 NR_027115 285768 Hs.209463 NR_027115 LOC285768 - uncharacterized LOC285768 ncRNA 13-PTNLD9-TUMOR_peak_11704 chr11 131564841 131564935 + 3.81191 NA intron (NM_001048209, intron 1 of 7) intron (NM_001048209, intron 1 of 7) -154127 NR_110140 101929653 Hs.559159 NR_110140 ENSG00000237654 LOC101929653 - uncharacterized LOC101929653 ncRNA 13-PTNLD9-TUMOR_peak_46279 chr6 150244274 150244368 + 3.81191 NA promoter-TSS (NM_001001788) promoter-TSS (NM_001001788) -107 NM_001001788 353091 Hs.558792 NM_001001788 HPRD:16467 RAET1G ULBP5 retinoic acid early transcript 1G protein-coding 13-PTNLD9-TUMOR_peak_32307 chr21 39607351 39607445 + 3.81191 NA intron (NM_001276438, intron 1 of 2) AluSx|SINE|Alu 5561 NM_001276437 3772 Hs.411299 NM_002243 HPRD:03659 KCNJ15 IRKK|KIR1.3|KIR4.2 potassium inwardly-rectifying channel, subfamily J, member 15 protein-coding 13-PTNLD9-TUMOR_peak_55939 chrX 57936033 57936479 + 3.81191 NA exon (NM_007156, exon 1 of 1) exon (NM_007156, exon 1 of 1) 811 NM_007156 7789 Hs.550094 NM_007156 HPRD:02210 ZXDA ZNF896 zinc finger, X-linked, duplicated A protein-coding 13-PTNLD9-TUMOR_peak_26948 chr2 54772958 54773052 + 3.81191 NA intron (NM_003128, intron 2 of 35) intron (NM_003128, intron 2 of 35) -12526 NM_178313 6711 Hs.503178 NM_003128 HPRD:01683 SPTBN1 ELF|HEL102|SPTB2|betaSpII spectrin, beta, non-erythrocytic 1 protein-coding 13-PTNLD9-TUMOR_peak_1093 chr1 36059283 36059377 + 3.81191 NA intron (NM_178548, intron 6 of 6) intron (NM_178548, intron 6 of 6) 20359 NM_178548 339488 Hs.567844 NM_178548 HPRD:18174 TFAP2E AP2E transcription factor AP-2 epsilon (activating enhancer binding protein 2 epsilon) protein-coding 13-PTNLD9-TUMOR_peak_33663 chr3 8859330 8859516 + 3.81191 NA Intergenic Intergenic -48123 NM_000916 5021 Hs.2820 NM_000916 HPRD:01328 OXTR OT-R oxytocin receptor protein-coding 13-PTNLD9-TUMOR_peak_26011 chr2 8448071 8448170 + 3.81191 NA intron (NR_034135, intron 2 of 8) intron (NR_034135, intron 2 of 8) 20429 NR_034135 339789 Hs.565619 NM_207358 HPRD:14171 LINC00299 C2orf46|NCRNA00299 long intergenic non-protein coding RNA 299 ncRNA 13-PTNLD9-TUMOR_peak_5351 chr1 211912281 211912533 + 3.81191 NA Intergenic Intergenic -63435 NM_001204182 4751 Hs.153704 NM_002497 HPRD:04953 NEK2 HsPK21|NEK2A|NLK1|PPP1R111|RP67 NIMA-related kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_30786 chr20 31545414 31545538 + 3.81191 NA Intergenic L1MEg|LINE|L1 46763 NM_080675 140732 Hs.375186 NM_080675 HPRD:15422 SUN5 SPAG4L|TSARG4|dJ726C3.1 Sad1 and UNC84 domain containing 5 protein-coding 13-PTNLD9-TUMOR_peak_27102 chr2 65605005 65605099 + 3.81191 NA intron (NM_181784, intron 1 of 5) intron (NM_181784, intron 1 of 5) -11121 NM_001128210 200734 Hs.59332 NM_181784 HPRD:18100 SPRED2 Spred-2 sprouty-related, EVH1 domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_51662 chr8 117538167 117538279 + 3.81191 NA Intergenic Intergenic -200926 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 13-PTNLD9-TUMOR_peak_35462 chr3 116764087 116764182 + 3.81191 NA Intergenic LTR16A|LTR|ERVL 123856 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 13-PTNLD9-TUMOR_peak_6531 chr10 13760255 13760349 + 3.81191 NA intron (NM_018027, intron 12 of 24) intron (NM_018027, intron 12 of 24) 131363 NM_003675 8559 Hs.729158 NM_003675 HPRD:05407 PRPF18 PRP18|hPrp18 pre-mRNA processing factor 18 protein-coding 13-PTNLD9-TUMOR_peak_14472 chr13 27845189 27845303 + 3.81191 NA intron (NM_206827, intron 1 of 3) CpG 782 NM_206827 387496 Hs.192131 NM_206827 HPRD:17956 RASL11A - RAS-like, family 11, member A protein-coding 13-PTNLD9-TUMOR_peak_31519 chr20 51085776 51085922 + 3.81191 NA Intergenic LTR40a|LTR|ERVL -151528 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 13-PTNLD9-TUMOR_peak_36931 chr3 183146421 183146519 + 3.81001 NA promoter-TSS (NM_015078) promoter-TSS (NM_015078) -413 NM_015078 23101 Hs.208267 NM_015078 HPRD:08308 MCF2L2 ARHGEF22 MCF.2 cell line derived transforming sequence-like 2 protein-coding 13-PTNLD9-TUMOR_peak_33847 chr3 13549078 13549182 + 3.81001 NA Intergenic Intergenic 27286 NM_001136041 79885 Hs.744132 NM_024827 HPRD:09146 HDAC11 HD11 histone deacetylase 11 protein-coding 13-PTNLD9-TUMOR_peak_10399 chr11 67914572 67914666 + 3.81001 NA Intergenic Intergenic -25761 NM_001277 1119 Hs.77221 NM_001277 HPRD:00327 CHKA CHK|CK|CKI|EK choline kinase alpha protein-coding 13-PTNLD9-TUMOR_peak_21727 chr17 61513324 61513418 + 3.81001 NA intron (NM_001017916, intron 3 of 5) intron (NM_001017916, intron 3 of 5) 4836 NM_001017917 1534 Hs.355264 NM_001915 HPRD:02485 CYB561 CYB561A1|FRRS2 cytochrome b561 protein-coding 13-PTNLD9-TUMOR_peak_16286 chr14 75696395 75696640 + 3.81001 NA Intergenic Intergenic -48964 NM_005252 2353 Hs.25647 NM_005252 HPRD:01275 FOS AP-1|C-FOS|p55 FBJ murine osteosarcoma viral oncogene homolog protein-coding 13-PTNLD9-TUMOR_peak_48767 chr7 106416196 106416290 + 3.81001 NA Intergenic Intergenic -89480 NM_001282426 5294 Hs.32942 NM_002649 HPRD:03135 PIK3CG PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma protein-coding 13-PTNLD9-TUMOR_peak_27964 chr2 109336179 109336303 + 3.81001 NA intron (NM_006267, intron 1 of 28) CpG 304 NM_006267 5903 Hs.199561 NM_006267 HPRD:03111 RANBP2 ADANE|ANE1|IIAE3|NUP358|TRP1|TRP2 RAN binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_12870 chr12 53339729 53339941 + 3.80650 NA intron (NM_001256293, intron 1 of 8) intron (NM_001256293, intron 1 of 8) -2820 NM_199187 3875 Hs.406013 NM_000224 HPRD:01020 KRT18 CYK18|K18 keratin 18 protein-coding 13-PTNLD9-TUMOR_peak_3214 chr1 144008309 144008430 + 3.80637 NA Intergenic Intergenic -95209 NM_001287385 554282 NM_001287385 FAM72C - family with sequence similarity 72, member C protein-coding 13-PTNLD9-TUMOR_peak_1625 chr1 46838256 46838438 + 3.80026 NA Intergenic MSTC-int|LTR|ERVL-MaLR -21592 NM_001441 2166 Hs.720143 NM_001441 HPRD:04244 FAAH FAAH-1|PSAB fatty acid amide hydrolase protein-coding 13-PTNLD9-TUMOR_peak_31708 chr20 57225843 57225979 + 3.80026 NA promoter-TSS (NM_001204868) promoter-TSS (NM_001204868) -398 NR_037943 8675 Hs.307913 NM_003763 HPRD:04718 STX16 SYN16 syntaxin 16 protein-coding 13-PTNLD9-TUMOR_peak_36081 chr3 137837858 137837952 + 3.80026 NA Intergenic Intergenic -3454 NM_173543 199221 Hs.351403 NM_173543 HPRD:08145 DZIP1L DZIP2 DAZ interacting zinc finger protein 1-like protein-coding 13-PTNLD9-TUMOR_peak_26037 chr2 9318507 9318706 + 3.80026 NA Intergenic MER4B|LTR|ERV1 -28288 NM_001135191 8853 Hs.555902 NM_003887 HPRD:04820 ASAP2 AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 protein-coding 13-PTNLD9-TUMOR_peak_31243 chr20 44997145 44997281 + 3.80026 NA intron (NM_182764, intron 20 of 20) intron (NM_182764, intron 20 of 20) -4116 NM_173073 51006 Hs.593344 NM_015945 HPRD:15371 SLC35C2 BA394O2.1|C20orf5|CGI-15|OVCOV1 solute carrier family 35 (GDP-fucose transporter), member C2 protein-coding 13-PTNLD9-TUMOR_peak_16116 chr14 69015894 69016112 + 3.79794 NA intron (NM_133509, intron 10 of 10) intron (NM_133509, intron 10 of 10) 244628 NM_004926 677 Hs.85155 NM_004926 HPRD:03041 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein-like 1 protein-coding 13-PTNLD9-TUMOR_peak_48411 chr7 97748966 97749090 + 3.78971 NA intron (NM_014916, intron 1 of 13) intron (NM_014916, intron 1 of 13) 12831 NM_014916 22853 Hs.444179 NM_014916 HPRD:13994 LMTK2 AATYK2|BREK|KPI-2|KPI2|LMR2|PPP1R100|cprk lemur tyrosine kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_4925 chr1 201123282 201123417 + 3.78971 NA non-coding (NR_109921, exon 1 of 5) non-coding (NR_109921, exon 1 of 5) 334 NM_016456 252839 Hs.181444 NM_016456 HPRD:15542 TMEM9 TMEM9A transmembrane protein 9 protein-coding 13-PTNLD9-TUMOR_peak_54797 chr9 129885101 129885363 + 3.78971 NA promoter-TSS (NM_012098) promoter-TSS (NM_012098) -188 NM_012098 23452 Hs.653262 NM_012098 HPRD:05415 ANGPTL2 ARP2|HARP angiopoietin-like 2 protein-coding 13-PTNLD9-TUMOR_peak_6401 chr10 6518901 6519227 + 3.78971 NA intron (NM_001282644, intron 12 of 17) intron (NM_001282644, intron 12 of 17) 103199 NM_001282644 5588 Hs.498570 NM_006257 HPRD:02710 PRKCQ PRKCT|nPKC-theta protein kinase C, theta protein-coding 13-PTNLD9-TUMOR_peak_55483 chrX 2319777 2319943 + 3.78971 NA intron (NM_145177, intron 3 of 6) intron (NM_145177, intron 3 of 6) 98720 NM_001171135 9189 Hs.131452 NM_004729 HPRD:02170 ZBED1 ALTE|DREF|TRAMP|hDREF zinc finger, BED-type containing 1 protein-coding 13-PTNLD9-TUMOR_peak_12799 chr12 52438279 52438373 + 3.78971 NA intron (NM_001202234, intron 2 of 7) intron (NM_001202234, intron 2 of 7) 6827 NM_001202234 3164 Hs.524430 NM_002135 HPRD:00744 NR4A1 GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3 nuclear receptor subfamily 4, group A, member 1 protein-coding 13-PTNLD9-TUMOR_peak_6061 chr1 240947130 240947293 + 3.78971 NA intron (NM_001282778, intron 16 of 16) AluSq2|SINE|Alu -171749 NM_022469 64388 Hs.98206 NM_022469 HPRD:16390 GREM2 CKTSF1B2|DAND3|PRDC gremlin 2, DAN family BMP antagonist protein-coding 13-PTNLD9-TUMOR_peak_56789 chrY 2269777 2269943 + 3.78971 NA intron (NM_145177, intron 3 of 6).2 intron (NM_145177, intron 3 of 6).2 98720 NM_001171135 9189 Hs.131452 NM_004729 HPRD:02170 ZBED1 ALTE|DREF|TRAMP|hDREF zinc finger, BED-type containing 1 protein-coding 13-PTNLD9-TUMOR_peak_31472 chr20 49487412 49487575 + 3.78971 NA intron (NM_198799, intron 4 of 4) intron (NM_198799, intron 4 of 4) 38835 NM_001282532 23394 Hs.293736 NM_015339 HPRD:09793 ADNP ADNP1|MRD28 activity-dependent neuroprotector homeobox protein-coding 13-PTNLD9-TUMOR_peak_28217 chr2 119681060 119681192 + 3.78971 NA Intergenic LTR19A|LTR|ERV1 -18619 NM_006770 8685 Hs.67726 NM_006770 HPRD:05337 MARCO SCARA2 macrophage receptor with collagenous structure protein-coding 13-PTNLD9-TUMOR_peak_50699 chr8 41180521 41180674 + 3.78737 NA Intergenic L2b|LINE|L2 -13607 NM_003012 6422 Hs.213424 NM_003012 HPRD:09165 SFRP1 FRP|FRP-1|FRP1|FrzA|SARP2 secreted frizzled-related protein 1 protein-coding 13-PTNLD9-TUMOR_peak_25558 chr19 53141212 53141386 + 3.78737 NA intron (NM_001277951, intron 1 of 2) CpG 345 NM_001105550 55769 Hs.467210 NM_018300 HPRD:01935 ZNF83 HPF1|ZNF816B zinc finger protein 83 protein-coding 13-PTNLD9-TUMOR_peak_43221 chr5 177302551 177302676 + 3.78737 NA non-coding (NR_003615, exon 1 of 6) non-coding (NR_003615, exon 1 of 6) 351 NR_003615 728554 Hs.535769 NR_003615 ENSG00000170089 LOC728554 - THO complex 3 pseudogene pseudo 13-PTNLD9-TUMOR_peak_14013 chr12 120378779 120378963 + 3.78245 NA Intergenic Intergenic -48777 NM_207311 92558 Hs.369763 NM_207311 HPRD:14292 CCDC64 BICDR-1|H_267D11.1 coiled-coil domain containing 64 protein-coding 13-PTNLD9-TUMOR_peak_39812 chr4 166128663 166128830 + 3.78245 NA promoter-TSS (NM_007246) promoter-TSS (NM_007246) -24 NM_007246 11275 Hs.388668 NM_007246 HPRD:09311 KLHL2 ABP-KELCH|MAV|MAYVEN kelch-like family member 2 protein-coding 13-PTNLD9-TUMOR_peak_7827 chr10 79686099 79686220 + 3.78245 NA promoter-TSS (NR_024585) promoter-TSS (NR_024585) 189 NM_004747 9231 Hs.652690 NM_004747 HPRD:04972 DLG5 LP-DLG|P-DLG5|PDLG discs, large homolog 5 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_15074 chr13 107347623 107347778 + 3.78245 NA Intergenic Intergenic 41472 NR_047026 100874173 Hs.569297 NR_047026 ENSG00000230156 LINC00443 - long intergenic non-protein coding RNA 443 ncRNA 13-PTNLD9-TUMOR_peak_5856 chr1 233233851 233234027 + 3.78245 NA intron (NM_014801, intron 21 of 33) intron (NM_014801, intron 21 of 33) 147569 NM_032324 84284 Hs.642715 NM_032324 NTPCR C1orf57|HCR-NTPase nucleoside-triphosphatase, cancer-related protein-coding 13-PTNLD9-TUMOR_peak_53660 chr9 77502869 77502963 + 3.78245 NA promoter-TSS (NM_001177310) promoter-TSS (NM_001177310) 94 NM_017662 140803 Hs.272225 NM_017662 HPRD:06112 TRPM6 CHAK2|HMGX|HOMG|HOMG1|HSH transient receptor potential cation channel, subfamily M, member 6 protein-coding 13-PTNLD9-TUMOR_peak_20316 chr17 4710321 4710477 + 3.78245 NA promoter-TSS (NM_002663) promoter-TSS (NM_002663) 3 NM_002663 5338 Hs.104519 NM_002663 HPRD:03857 PLD2 - phospholipase D2 protein-coding 13-PTNLD9-TUMOR_peak_16427 chr14 90875632 90875938 + 3.78245 NA Intergenic Intergenic 12458 NM_006888 801 Hs.282410 NM_006888 HPRD:00241 CALM1 CALML2|CAMI|CPVT4|DD132|PHKD|caM calmodulin 1 (phosphorylase kinase, delta) protein-coding 13-PTNLD9-TUMOR_peak_46463 chr6 161412419 161412515 + 3.78245 NA promoter-TSS (NM_001291958) promoter-TSS (NM_001291958) -292 NM_005922 4216 Hs.390428 NM_005922 HPRD:03886 MAP3K4 MAPKKK4|MEKK 4|MEKK4|MTK1|PRO0412 mitogen-activated protein kinase kinase kinase 4 protein-coding 13-PTNLD9-TUMOR_peak_54263 chr9 104242779 104242913 + 3.78245 NA intron (NR_121574, intron 2 of 2) intron (NR_121574, intron 2 of 2) 6629 NM_032342 84302 Hs.655738 NM_032342 TMEM246 C9orf125 transmembrane protein 246 protein-coding 13-PTNLD9-TUMOR_peak_28206 chr2 119444046 119444222 + 3.78245 NA Intergenic Intergenic -83592 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 13-PTNLD9-TUMOR_peak_21137 chr17 41792042 41792241 + 3.78245 NA Intergenic MLT1I|LTR|ERVL-MaLR 44015 NM_025237 50964 Hs.349204 NM_025237 HPRD:05762 SOST CDD|SOST1|VBCH sclerostin protein-coding 13-PTNLD9-TUMOR_peak_11744 chr12 94210 94362 + 3.76968 NA Intergenic TAR1|Satellite|telo 6302 NR_028269 100288778 Hs.585931 NR_028269 LOC100288778 - WAS protein family homolog 1 pseudogene pseudo 13-PTNLD9-TUMOR_peak_2492 chr1 93913650 93913781 + 3.76498 NA promoter-TSS (NM_001164473) promoter-TSS (NM_001164473) 27 NM_001024948 54874 Hs.134060 NM_017737 HPRD:12317 FNBP1L C1orf39|TOCA1 formin binding protein 1-like protein-coding 13-PTNLD9-TUMOR_peak_32928 chr22 24128944 24129180 + 3.76498 NA promoter-TSS (NM_003073) promoter-TSS (NM_003073) -88 NM_003073 6598 Hs.534350 NM_003073 HPRD:03364 SMARCB1 BAF47|INI1|MRD15|PPP1R144|RDT|RTPS1|SNF5|SNF5L1|SWNTS1|Sfh1p|Snr1|hSNFS SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 protein-coding 13-PTNLD9-TUMOR_peak_14479 chr13 28000170 28000271 + 3.76498 NA intron (NM_002097, intron 1 of 8) intron (NM_002097, intron 1 of 8) 1539 NM_002097 2971 Hs.445977 NM_002097 HPRD:02916 GTF3A AP2|TFIIIA general transcription factor IIIA protein-coding 13-PTNLD9-TUMOR_peak_7715 chr10 73840226 73840373 + 3.76498 NA intron (NM_001244950, intron 1 of 10) intron (NM_001244950, intron 1 of 10) 8232 NM_001244950 9806 Hs.523009 NM_014767 HPRD:12146 SPOCK2 testican-2 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2 protein-coding 13-PTNLD9-TUMOR_peak_54656 chr9 124030853 124031028 + 3.76498 NA intron (NM_001127662, intron 1 of 16) intron (NM_001127662, intron 1 of 16) 560 NM_001127662 2934 Hs.522373 NM_000177 HPRD:00674 GSN ADF|AGEL gelsolin protein-coding 13-PTNLD9-TUMOR_peak_33185 chr22 36023652 36023918 + 3.76498 NA Intergenic Intergenic -4384 NM_203377 4151 Hs.517586 NM_005368 HPRD:01170 MB PVALB|myoglobgin myoglobin protein-coding 13-PTNLD9-TUMOR_peak_19413 chr16 56672389 56672534 + 3.76498 NA promoter-TSS (NM_005946) promoter-TSS (NM_005946) -117 NM_005946 4489 Hs.655199 NM_005946 HPRD:07035 MT1A MT1|MT1S|MTC metallothionein 1A protein-coding 13-PTNLD9-TUMOR_peak_6095 chr1 243584698 243584837 + 3.76485 NA intron (NM_006642, intron 15 of 17) intron (NM_006642, intron 15 of 17) 75289 NR_039824 100616343 NR_039824 MIR4677 - microRNA 4677 ncRNA 13-PTNLD9-TUMOR_peak_17230 chr15 45933714 45933892 + 3.76485 NA intron (NM_021199, intron 1 of 9) intron (NM_021199, intron 1 of 9) 6865 NM_021199 58472 Hs.511251 NM_021199 HPRD:18102 SQRDL PRO1975 sulfide quinone reductase-like (yeast) protein-coding 13-PTNLD9-TUMOR_peak_40139 chr5 318610 318704 + 3.76485 NA intron (NM_020731, intron 1 of 11) intron (NM_020731, intron 1 of 11) 14366 NM_001242412 57491 Hs.50823 NM_020731 HPRD:07356 AHRR AHH|AHHR|bHLHe77 aryl-hydrocarbon receptor repressor protein-coding 13-PTNLD9-TUMOR_peak_46304 chr6 151072472 151072638 + 3.76485 NA intron (NM_001029884, intron 3 of 16) MIRb|SINE|MIR -114260 NM_001242769 25902 Hs.591343 NM_015440 HPRD:09967 MTHFD1L FTHFSDC1|MTC1THFS|dJ292B18.2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like protein-coding 13-PTNLD9-TUMOR_peak_29496 chr2 201165456 201165560 + 3.76485 NA Intergenic Intergenic -5096 NM_015535 26010 Hs.120323 NM_015535 HPRD:10916 SPATS2L DNAPTP6|SGNP spermatogenesis associated, serine-rich 2-like protein-coding 13-PTNLD9-TUMOR_peak_48262 chr7 90092807 90092901 + 3.76485 NA Intergenic Intergenic 60206 NM_012129 9069 Hs.731917 NM_012129 HPRD:13064 CLDN12 - claudin 12 protein-coding 13-PTNLD9-TUMOR_peak_16868 chr15 28702789 28702975 + 3.76485 NA Intergenic Intergenic 31245 NR_039733 100616228 NR_039733 miRBase:MI0016874 MIR4509-2 - microRNA 4509-2 ncRNA 13-PTNLD9-TUMOR_peak_22379 chr17 81153321 81153545 + 3.76473 NA Intergenic Intergenic -21233 NR_029406 388574 Hs.546918 NR_029406 ENSG00000232938 FLJ43681 - ribosomal protein L23a pseudogene pseudo 13-PTNLD9-TUMOR_peak_10209 chr11 65150179 65150415 + 3.76473 NA promoter-TSS (NM_001278250) promoter-TSS (NM_001278250) -152 NM_182556 283130 Hs.661604 NM_182556 HPRD:14142 SLC25A45 - solute carrier family 25, member 45 protein-coding 13-PTNLD9-TUMOR_peak_36976 chr3 184054132 184054347 + 3.75733 NA intron (NM_001171093, intron 1 of 5) CpG 522 NM_001171093 131408 Hs.591307 NM_144635 HPRD:14481 FAM131A C3orf40|FLAT715|PRO1378 family with sequence similarity 131, member A protein-coding 13-PTNLD9-TUMOR_peak_4020 chr1 158150882 158151103 + 3.75321 NA intron (NM_001766, intron 2 of 6) CpG 1255 NM_001766 912 Hs.1799 NM_001766 HPRD:01780 CD1D CD1A|R3 CD1d molecule protein-coding 13-PTNLD9-TUMOR_peak_33424 chr22 45940501 45940655 + 3.75319 NA intron (NM_001996, intron 11 of 14) MER67B|LTR|ERV1 41859 NM_001996 2192 Hs.24601 NM_001996 HPRD:00629 FBLN1 FBLN|FIBL1 fibulin 1 protein-coding 13-PTNLD9-TUMOR_peak_51100 chr8 68308924 68309125 + 3.75319 NA Intergenic L2c|LINE|L2 -53112 NM_006421 10565 Hs.656902 NM_006421 HPRD:09163 ARFGEF1 ARFGEP1|BIG1|P200 ADP-ribosylation factor guanine nucleotide-exchange factor 1 (brefeldin A-inhibited) protein-coding 13-PTNLD9-TUMOR_peak_40402 chr5 15453006 15453168 + 3.75319 NA Intergenic Intergenic -47218 NM_012304 23194 Hs.433057 NM_012304 HPRD:05740 FBXL7 FBL6|FBL7 F-box and leucine-rich repeat protein 7 protein-coding 13-PTNLD9-TUMOR_peak_50656 chr8 38570199 38570293 + 3.75319 NA Intergenic Intergenic -15458 NM_001146216 6867 Hs.279245 NM_006283 HPRD:10391 TACC1 Ga55 transforming, acidic coiled-coil containing protein 1 protein-coding 13-PTNLD9-TUMOR_peak_54033 chr9 96267118 96267377 + 3.75319 NA intron (NM_001286722, intron 5 of 17) L1ME3D|LINE|L1 -51373 NM_198841 158293 Hs.350364 NM_198841 HPRD:12931 FAM120AOS C9orf10OS family with sequence similarity 120A opposite strand protein-coding 13-PTNLD9-TUMOR_peak_37180 chr3 189474513 189474720 + 3.75319 NA intron (NM_003722, intron 3 of 13) intron (NM_003722, intron 3 of 13) -32833 NM_001114980 8626 Hs.137569 NM_003722 HPRD:04469 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 13-PTNLD9-TUMOR_peak_39663 chr4 153511650 153511755 + 3.75319 NA Intergenic Intergenic 54122 NR_039658 100616193 NR_039658 miRBase:MI0016799 MIR4453 - microRNA 4453 ncRNA 13-PTNLD9-TUMOR_peak_11882 chr12 4647592 4647686 + 3.75319 NA promoter-TSS (NM_001130862) promoter-TSS (NM_001130862) -2 NM_020374 57102 Hs.302977 NM_020374 HPRD:12609 C12orf4 - chromosome 12 open reading frame 4 protein-coding 13-PTNLD9-TUMOR_peak_20745 chr17 26578662 26578756 + 3.75319 NA Intergenic Intergenic 4239 NR_002181 23614 Hs.744962 NR_002181 HPRD:09437 PPY2 - pancreatic polypeptide 2 pseudo 13-PTNLD9-TUMOR_peak_9596 chr11 40624507 40624690 + 3.75319 NA intron (NM_001258419, intron 3 of 6) intron (NM_001258419, intron 3 of 6) -309918 NR_047673 57689 Hs.745123 NM_020929 HPRD:12303 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 13-PTNLD9-TUMOR_peak_54160 chr9 100557037 100557178 + 3.75319 NA Intergenic L2|LINE|L2 -58430 NM_004473 2304 Hs.159234 NM_004473 HPRD:04014 FOXE1 FKHL15|FOXE2|HFKH4|HFKL5|TITF2|TTF-2|TTF2 forkhead box E1 (thyroid transcription factor 2) protein-coding 13-PTNLD9-TUMOR_peak_27816 chr2 100436437 100436594 + 3.75319 NA intron (NM_001025108, intron 7 of 23) intron (NM_001025108, intron 7 of 23) 285530 NM_001025108 3899 Hs.444414 NM_002285 HPRD:03272 AFF3 LAF4|MLLT2-like AF4/FMR2 family, member 3 protein-coding 13-PTNLD9-TUMOR_peak_22384 chr17_gl000205_random 34022 34216 + 3.74886 NA Intergenic Intergenic -82504 NR_003682 403340 Hs.572501 NR_003682 MGC70870 - C-terminal binding protein 2 pseudogene pseudo 13-PTNLD9-TUMOR_peak_45701 chr6 89855804 89856038 + 3.74712 NA exon (NM_001010853, exon 1 of 7) exon (NM_001010853, exon 1 of 7) 152 NM_001010853 135293 Hs.356247 NM_001010853 HPRD:16473 PM20D2 ACY1L2|bA63L7.3 peptidase M20 domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_23840 chr19 8373444 8373629 + 3.74712 NA promoter-TSS (NM_001165895) promoter-TSS (NM_001165895) -296 NM_001165895 51293 Hs.558499 NM_016579 HPRD:05929 CD320 8D6|8D6A|TCBLR CD320 molecule protein-coding 13-PTNLD9-TUMOR_peak_26724 chr2 43447006 43447219 + 3.74712 NA Intergenic Intergenic 6633 NM_006887 678 Hs.503093 NM_006887 HPRD:18319 ZFP36L2 BRF2|ERF-2|ERF2|RNF162C|TIS11D ZFP36 ring finger protein-like 2 protein-coding 13-PTNLD9-TUMOR_peak_38609 chr4 76649326 76649420 + 3.74712 NA promoter-TSS (NM_001290049) promoter-TSS (NM_001290049) -333 NM_003715 8615 Hs.744877 NM_003715 HPRD:09135 USO1 P115|TAP|VDP USO1 vesicle transport factor protein-coding 13-PTNLD9-TUMOR_peak_40480 chr5 21459677 21459771 + 3.74339 NA intron (NR_027028, intron 1 of 5) CpG 135 NR_027027 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - glucuronidase, beta pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_54079 chr9 97712829 97713063 + 3.74339 NA intron (NM_001193329, intron 6 of 15) intron (NM_001193329, intron 6 of 15) -114686 NR_106729 102466518 NR_106729 MIR6081 hsa-mir-6081 microRNA 6081 ncRNA 13-PTNLD9-TUMOR_peak_4567 chr1 178986232 178986443 + 3.74339 NA Intergenic Intergenic -8737 NM_014864 9917 Hs.5737 NM_014864 HPRD:13297 FAM20B gxk1 family with sequence similarity 20, member B protein-coding 13-PTNLD9-TUMOR_peak_21962 chr17 73008603 73008800 + 3.74339 NA promoter-TSS (NM_001545) promoter-TSS (NM_001545) -79 NM_001545 3396 Hs.407955 NM_001545 HPRD:04299 ICT1 DS-1|DS1|MRP-L58 immature colon carcinoma transcript 1 protein-coding 13-PTNLD9-TUMOR_peak_34906 chr3 69227189 69227283 + 3.74339 NA intron (NM_015123, intron 21 of 22) intron (NM_015123, intron 21 of 22) -55490 NM_198271 56203 Hs.350621 NM_198271 HPRD:13993 LMOD3 - leiomodin 3 (fetal) protein-coding 13-PTNLD9-TUMOR_peak_35490 chr3 119030645 119030739 + 3.74339 NA intron (NM_020754, intron 1 of 11) intron (NM_020754, intron 1 of 11) 10915 NR_046748 100874246 Hs.607097 NR_046748 ARHGAP31-AS1 - ARHGAP31 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_32572 chr21 46749385 46749484 + 3.74339 NA Intergenic Intergenic 12471 NR_103811 388830 Hs.592162 NR_103811 ENSG00000237664 LINC00316 C21orf111|NCRNA00316|PRED59 long intergenic non-protein coding RNA 316 ncRNA 13-PTNLD9-TUMOR_peak_47100 chr7 25642810 25642973 + 3.73996 NA Intergenic L1PA2|LINE|L1 237739 NR_046486 100873753 NR_046486 RNU6-16P RNU6-16 RNA, U6 small nuclear 16, pseudogene snRNA 13-PTNLD9-TUMOR_peak_17679 chr15 75468130 75468235 + 3.73996 NA Intergenic MIR3|SINE|MIR -26039 NM_015492 56905 Hs.17936 NM_015492 HPRD:13154 C15orf39 - chromosome 15 open reading frame 39 protein-coding 13-PTNLD9-TUMOR_peak_13094 chr12 60556894 60557043 + 3.73996 NA Intergenic MER66D|LTR|ERV1 473850 NR_073056 9194 Hs.88156 NM_004731 HPRD:06791 SLC16A7 MCT2 solute carrier family 16 (monocarboxylate transporter), member 7 protein-coding 13-PTNLD9-TUMOR_peak_21580 chr17 55634808 55634926 + 3.73996 NA intron (NM_138962, intron 7 of 13) intron (NM_138962, intron 7 of 13) -33909 NR_110808 101927557 Hs.639984 NR_110808 ENSG00000266100 LOC101927557 - uncharacterized LOC101927557 ncRNA 13-PTNLD9-TUMOR_peak_49259 chr7 136322704 136322840 + 3.73996 NA Intergenic Intergenic -230627 NM_001006627 1129 Hs.535891 NM_000739 HPRD:00328 CHRM2 HM2 cholinergic receptor, muscarinic 2 protein-coding 13-PTNLD9-TUMOR_peak_26828 chr2 47039806 47040045 + 3.73996 NA Intergenic Intergenic -3882 NR_034099 388948 Hs.728895 NR_034099 ENSG00000222005 LINC01118 - long intergenic non-protein coding RNA 1118 ncRNA 13-PTNLD9-TUMOR_peak_54864 chr9 131534119 131534491 + 3.73996 NA promoter-TSS (NM_006336) promoter-TSS (NM_006336) -92 NM_006336 10444 Hs.147950 NM_006336 HPRD:10802 ZER1 C9orf60|ZYG|ZYG11BL zyg-11 related, cell cycle regulator protein-coding 13-PTNLD9-TUMOR_peak_25122 chr19 45348079 45348223 + 3.72928 NA Intergenic CpG -1242 NM_002856 5819 Hs.655455 NM_002856 HPRD:02879 PVRL2 CD112|HVEB|PRR2|PVRR2 poliovirus receptor-related 2 (herpesvirus entry mediator B) protein-coding 13-PTNLD9-TUMOR_peak_53820 chr9 86946477 86946571 + 3.72401 NA intron (NM_022127, intron 2 of 18) intron (NM_022127, intron 2 of 18) 9170 NM_001199633 64078 Hs.535966 NM_022127 HPRD:12200 SLC28A3 CNT3 solute carrier family 28 (concentrative nucleoside transporter), member 3 protein-coding 13-PTNLD9-TUMOR_peak_54118 chr9 99328782 99328898 + 3.72401 NA intron (NM_003671, intron 1 of 12) CpG 363 NM_001077181 8555 Hs.40582 NM_003671 HPRD:04615 CDC14B CDC14B3|Cdc14B1|Cdc14B2|hCDC14B cell division cycle 14B protein-coding 13-PTNLD9-TUMOR_peak_50955 chr8 55157418 55157580 + 3.72401 NA Intergenic Intergenic 109718 NM_014175 29088 Hs.18349 NM_014175 MRPL15 L15mt|MRP-L15|MRP-L7|RPML7 mitochondrial ribosomal protein L15 protein-coding 13-PTNLD9-TUMOR_peak_30788 chr20 31664482 31664587 + 3.72401 NA Intergenic Intergenic -4784 NM_182519 149954 Hs.38961 NM_182519 HPRD:16645 BPIFB4 C20orf186|LPLUNC4|RY2G5|dJ726C3.5 BPI fold containing family B, member 4 protein-coding 13-PTNLD9-TUMOR_peak_11368 chr11 118273005 118273148 + 3.72401 NA intron (NM_006476, intron 1 of 2) intron (NM_006476, intron 1 of 2) 972 NM_006476 10632 Hs.486360 NM_006476 HPRD:09815 ATP5L ATP5JG ATP synthase, H+ transporting, mitochondrial Fo complex, subunit G protein-coding 13-PTNLD9-TUMOR_peak_45268 chr6 51337968 51338157 + 3.72401 NA Intergenic Intergenic 551623 NM_003221 7021 Hs.33102 NM_003221 HPRD:03360 TFAP2B AP-2B|AP2-B transcription factor AP-2 beta (activating enhancer binding protein 2 beta) protein-coding 13-PTNLD9-TUMOR_peak_12415 chr12 29794084 29794274 + 3.72401 NA intron (NM_175861, intron 5 of 17) L1PBa1|LINE|L1 142564 NM_001193451 83857 Hs.401954 NM_175861 HPRD:12472 TMTC1 OLF|TMTC1A transmembrane and tetratricopeptide repeat containing 1 protein-coding 13-PTNLD9-TUMOR_peak_18062 chr15 99409353 99409447 + 3.72401 NA intron (NM_001291858, intron 2 of 20) intron (NM_001291858, intron 2 of 20) 81745 NR_039864 100616432 NR_039864 MIR4714 - microRNA 4714 ncRNA 13-PTNLD9-TUMOR_peak_50873 chr8 48437124 48437239 + 3.72401 NA intron (NR_104581, intron 6 of 16) intron (NR_104581, intron 6 of 16) 213545 NM_005195 1052 Hs.440829 NM_005195 CEBPD C/EBP-delta|CELF|CRP3|NF-IL6-beta CCAAT/enhancer binding protein (C/EBP), delta protein-coding 13-PTNLD9-TUMOR_peak_28356 chr2 127555639 127555748 + 3.72401 NA Intergenic Intergenic 142182 NM_002101 2995 Hs.59138 NM_002101 HPRD:00193 GYPC CD236|CD236R|GE|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 13-PTNLD9-TUMOR_peak_52030 chr8 129549070 129549173 + 3.72401 NA intron (NR_121672, intron 2 of 7) intron (NR_121672, intron 2 of 7) 27804 NR_121672 101927774 Hs.628730 NR_121672 ENSG00000254275 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 13-PTNLD9-TUMOR_peak_45529 chr6 75977992 75978147 + 3.72401 NA intron (NM_018247, intron 1 of 6) MER21C|LTR|ERVL 16563 NM_018247 55754 Hs.108530 NM_018247 HPRD:15535 TMEM30A C6orf67|CDC50A transmembrane protein 30A protein-coding 13-PTNLD9-TUMOR_peak_13138 chr12 64339651 64339750 + 3.72401 NA intron (NM_020762, intron 1 of 21) intron (NM_020762, intron 1 of 21) 101159 NM_020762 57522 Hs.210751 NM_020762 HPRD:09406 SRGAP1 ARHGAP13 SLIT-ROBO Rho GTPase activating protein 1 protein-coding 13-PTNLD9-TUMOR_peak_51755 chr8 120941651 120941745 + 3.72401 NA intron (NM_022783, intron 2 of 8) L2c|LINE|L2 55803 NM_022783 64798 Hs.112981 NM_022783 HPRD:13137 DEPTOR DEP.6|DEPDC6 DEP domain containing MTOR-interacting protein protein-coding 13-PTNLD9-TUMOR_peak_8464 chr10 121632312 121632561 + 3.72401 NA promoter-TSS (NM_001256378) promoter-TSS (NM_001256378) -41 NM_024834 79892 Hs.124246 NM_024834 HPRD:07624 MCMBP C10orf119|MCM-BP minichromosome maintenance complex binding protein protein-coding 13-PTNLD9-TUMOR_peak_48577 chr7 100828630 100828724 + 3.72401 NA Intergenic MIRb|SINE|MIR -5120 NM_198571 375607 Hs.213044 NM_198571 HPRD:13434 NAT16 C7orf52 N-acetyltransferase 16 (GCN5-related, putative) protein-coding 13-PTNLD9-TUMOR_peak_7377 chr10 52385047 52385196 + 3.72339 NA Intergenic CpG-2841 -1384 NM_147156 259230 Hs.654698 NM_147156 HPRD:18203 SGMS1 MOB|MOB1|SMS1|TMEM23|hmob33 sphingomyelin synthase 1 protein-coding 13-PTNLD9-TUMOR_peak_15357 chr14 24505857 24506047 + 3.72186 NA intron (NR_102691, intron 1 of 3) intron (NR_102691, intron 1 of 3) 331 NR_102694 728635 Hs.647569 NM_001082488 DHRS4L1 SDR25C4 dehydrogenase/reductase (SDR family) member 4 like 1 protein-coding 13-PTNLD9-TUMOR_peak_2978 chr1 116185499 116185665 + 3.72186 NA intron (NM_001172412, intron 1 of 7) intron (NM_001172412, intron 1 of 7) 332 NM_001172412 81839 Hs.515130 NM_138959 HPRD:18279 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 13-PTNLD9-TUMOR_peak_23673 chr19 2817812 2818056 + 3.72186 NA Intergenic LTR10A|LTR|ERV1 -1938 NM_001102651 115196 Hs.307043 NM_152303 ZNF554 - zinc finger protein 554 protein-coding 13-PTNLD9-TUMOR_peak_12677 chr12 48215210 48215304 + 3.71944 NA Intergenic Intergenic -1494 NM_015401 51564 Hs.200063 NM_015401 HPRD:09133 HDAC7 HD7A|HDAC7A histone deacetylase 7 protein-coding 13-PTNLD9-TUMOR_peak_17297 chr15 52312102 52312226 + 3.71515 NA intron (NM_002748, intron 1 of 5) CpG 753 NM_002748 5597 Hs.411847 NM_002748 HPRD:04213 MAPK6 ERK3|HsT17250|PRKM6|p97MAPK mitogen-activated protein kinase 6 protein-coding 13-PTNLD9-TUMOR_peak_38084 chr4 22503129 22503240 + 3.71515 NA intron (NM_145290, intron 1 of 18) intron (NM_145290, intron 1 of 18) 14493 NM_145290 166647 Hs.99195 NM_145290 HPRD:11011 GPR125 PGR21|TEM5L G protein-coupled receptor 125 protein-coding 13-PTNLD9-TUMOR_peak_38580 chr4 74570838 74570965 + 3.71515 NA Intergenic Intergenic -35322 NM_000584 3576 Hs.624 NM_000584 HPRD:00909 CXCL8 GCP-1|GCP1|IL8|LECT|LUCT|LYNAP|MDNCF|MONAP|NAF|NAP-1|NAP1 chemokine (C-X-C motif) ligand 8 protein-coding 13-PTNLD9-TUMOR_peak_33569 chr3 4216530 4216634 + 3.71515 NA Intergenic L1PA6|LINE|L1 -128406 NM_001276325 6419 Hs.475300 NM_006515 HPRD:10225 SETMAR HsMar1|METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 13-PTNLD9-TUMOR_peak_51308 chr8 94929812 94929938 + 3.71515 NA intron (NM_001161781, intron 1 of 1) CpG 596 NM_001161781 54704 Hs.22265 NM_018444 HPRD:16185 PDP1 PDH|PDP|PDPC|PPM2C pyruvate dehyrogenase phosphatase catalytic subunit 1 protein-coding 13-PTNLD9-TUMOR_peak_37386 chr3 195448189 195448284 + 3.70442 NA intron (NM_152673, intron 1 of 5) intron (NM_152673, intron 1 of 5) 483 NM_020790 200958 Hs.308992 NM_020790 HPRD:17615 MUC20 MUC-20 mucin 20, cell surface associated protein-coding 13-PTNLD9-TUMOR_peak_13776 chr12 109435215 109435309 + 3.69964 NA intron (NM_018711, intron 1 of 14) L1PA2|LINE|L1 23783 NM_018711 55530 Hs.4221 NM_018711 HPRD:13224 SVOP - SV2 related protein homolog (rat) protein-coding 13-PTNLD9-TUMOR_peak_9429 chr11 32440443 32440666 + 3.69964 NA intron (NM_001198552, intron 3 of 8) intron (NM_001198552, intron 3 of 8) 11809 NM_001198552 7490 Hs.591980 NM_000378 HPRD:06163 WT1 AWT1|EWS-WT1|GUD|NPHS4|WAGR|WIT-2|WT33 Wilms tumor 1 protein-coding 13-PTNLD9-TUMOR_peak_4057 chr1 159843255 159843400 + 3.69964 NA intron (NM_012337, intron 10 of 11) AluJr|SINE|Alu -10880 NM_001013661 391123 Hs.647718 NM_001013661 HPRD:18404 VSIG8 - V-set and immunoglobulin domain containing 8 protein-coding 13-PTNLD9-TUMOR_peak_39827 chr4 169239844 169239951 + 3.69528 NA promoter-TSS (NM_017631) promoter-TSS (NM_017631) 61 NM_017631 55601 Hs.591710 NM_017631 HPRD:07877 DDX60 - DEAD (Asp-Glu-Ala-Asp) box polypeptide 60 protein-coding 13-PTNLD9-TUMOR_peak_41830 chr5 118415274 118415446 + 3.69528 NA intron (NM_001290322, intron 1 of 42) intron (NM_001290322, intron 1 of 42) 8276 NM_001290321 1657 Hs.181042 NM_005509 HPRD:09294 DMXL1 - Dmx-like 1 protein-coding 13-PTNLD9-TUMOR_peak_10102 chr11 62791618 62791762 + 3.69528 NA Intergenic Intergenic -8373 NM_001184736 9376 Hs.266223 NM_004254 ENSG00000149452 SLC22A8 OAT3 solute carrier family 22 (organic anion transporter), member 8 protein-coding 13-PTNLD9-TUMOR_peak_51352 chr8 97657745 97657942 + 3.69528 NA intron (NM_016134, intron 1 of 7) CpG 388 NM_016134 10404 Hs.156178 NM_016134 HPRD:07140 CPQ LDP|PGCP carboxypeptidase Q protein-coding 13-PTNLD9-TUMOR_peak_10371 chr11 67449798 67450045 + 3.69528 NA Intergenic MER11D|LTR|ERVK -1236 NM_001031615 222 Hs.87539 NM_000695 HPRD:03559 ALDH3B2 ALDH8 aldehyde dehydrogenase 3 family, member B2 protein-coding 13-PTNLD9-TUMOR_peak_11097 chr11 105589389 105589682 + 3.69528 NA intron (NM_001077243, intron 3 of 16) intron (NM_001077243, intron 3 of 16) 108124 NR_046356 2893 Hs.503743 NM_000829 HPRD:00694 GRIA4 GLUR4|GLUR4C|GLURD|GluA4 glutamate receptor, ionotropic, AMPA 4 protein-coding 13-PTNLD9-TUMOR_peak_45664 chr6 87647215 87647309 + 3.69528 NA 5' UTR (NM_000865, exon 1 of 2) 5' UTR (NM_000865, exon 1 of 2) 238 NM_000865 3354 Hs.1611 NM_000865 HPRD:01635 HTR1E 5-HT1E 5-hydroxytryptamine (serotonin) receptor 1E, G protein-coupled protein-coding 13-PTNLD9-TUMOR_peak_21190 chr17 43116426 43116574 + 3.69528 NA intron (NM_001288654, intron 1 of 4) intron (NM_001288654, intron 1 of 4) 12385 NM_001288655 79877 Hs.463148 NM_024819 HPRD:08012 DCAKD - dephospho-CoA kinase domain containing protein-coding 13-PTNLD9-TUMOR_peak_47427 chr7 47410357 47410451 + 3.69528 NA intron (NM_022748, intron 16 of 30) intron (NM_022748, intron 16 of 30) 211338 NM_022748 64759 Hs.520814 NM_022748 ENSG00000136205 TNS3 TEM6|TENS1 tensin 3 protein-coding 13-PTNLD9-TUMOR_peak_33633 chr3 8153070 8153164 + 3.69528 NA Intergenic Intergenic -95123 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 13-PTNLD9-TUMOR_peak_19435 chr16 57375705 57375808 + 3.69528 NA Intergenic Intergenic -16939 NM_002990 6367 Hs.534347 NM_002990 HPRD:04263 CCL22 ABCD-1|DC/B-CK|MDC|SCYA22|STCP-1 chemokine (C-C motif) ligand 22 protein-coding 13-PTNLD9-TUMOR_peak_19436 chr16 57401408 57401593 + 3.69528 NA Intergenic L1MC5|LINE|L1 -4914 NM_002996 6376 Hs.531668 NM_002996 HPRD:03529 CX3CL1 ABCD-3|C3Xkine|CXC3|CXC3C|NTN|NTT|SCYD1|fractalkine|neurotactin chemokine (C-X3-C motif) ligand 1 protein-coding 13-PTNLD9-TUMOR_peak_29819 chr2 218933908 218934027 + 3.69528 NA non-coding (NR_034176, exon 4 of 14) non-coding (NR_034176, exon 4 of 14) 229 NM_198483 285180 Hs.570069 NM_198483 HPRD:13539 RUFY4 - RUN and FYVE domain containing 4 protein-coding 13-PTNLD9-TUMOR_peak_18384 chr16 4675036 4675229 + 3.69496 NA intron (NR_102267, intron 1 of 14) CpG 307 NM_001142290 23295 Hs.526494 NM_015246 HPRD:07397 MGRN1 RNF156 mahogunin ring finger 1, E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_32571 chr21 46722007 46722299 + 3.69080 NA Intergenic Intergenic 14186 NR_026943 642852 Hs.11637 NR_026943 LOC642852 - uncharacterized LOC642852 ncRNA 13-PTNLD9-TUMOR_peak_54831 chr9 130769791 130770001 + 3.69080 NA Intergenic Intergenic -27084 NM_001035254 399665 Hs.535972 NM_203305 HPRD:13262 FAM102A C9orf132|EEIG1|SYM-3A|bA203J24.7 family with sequence similarity 102, member A protein-coding 13-PTNLD9-TUMOR_peak_25153 chr19 46170965 46171168 + 3.69080 NA promoter-TSS (NM_000164) promoter-TSS (NM_000164) -436 NM_000164 2696 Hs.658534 NM_000164 HPRD:00670 GIPR PGQTL2 gastric inhibitory polypeptide receptor protein-coding 13-PTNLD9-TUMOR_peak_54018 chr9 95786501 95786595 + 3.69080 NA intron (NM_001286993, intron 14 of 17) intron (NM_001286993, intron 14 of 17) -9322 NR_121565 101927954 Hs.673794 NR_121565 LOC101927954 - uncharacterized LOC101927954 ncRNA 13-PTNLD9-TUMOR_peak_20385 chr17 7218640 7218862 + 3.69080 NA promoter-TSS (NM_004489) promoter-TSS (NM_004489) -93 NM_004489 2874 Hs.438219 NM_004489 HPRD:11878 GPS2 AMF-1 G protein pathway suppressor 2 protein-coding 13-PTNLD9-TUMOR_peak_37015 chr3 185072030 185072289 + 3.69080 NA intron (NM_001242317, intron 2 of 12) intron (NM_001242317, intron 2 of 12) -8677 NM_004721 9175 Hs.591306 NM_004721 HPRD:05372 MAP3K13 LZK|MEKK13|MLK mitogen-activated protein kinase kinase kinase 13 protein-coding 13-PTNLD9-TUMOR_peak_27971 chr2 109539664 109539794 + 3.69080 NA intron (NM_022336, intron 5 of 11) intron (NM_022336, intron 5 of 11) 66099 NM_022336 10913 Hs.171971 NM_022336 HPRD:04974 EDAR DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1 ectodysplasin A receptor protein-coding 13-PTNLD9-TUMOR_peak_10478 chr11 70098196 70098290 + 3.69080 NA Intergenic Intergenic -18563 NR_045286 8500 Hs.530749 NM_003626 HPRD:11451 PPFIA1 LIP.1|LIP1|LIPRIN protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1 protein-coding 13-PTNLD9-TUMOR_peak_18853 chr16 27386469 27386563 + 3.69080 NA Intergenic MLT1K|LTR|ERVL-MaLR -26967 NM_181079 50615 Hs.210546 NM_021798 IL21R CD360|NILR interleukin 21 receptor protein-coding 13-PTNLD9-TUMOR_peak_2141 chr1 68219958 68220061 + 3.69080 NA intron (NM_018841, intron 2 of 3) L2|LINE|L2 69149 NM_001924 1647 Hs.80409 NM_001924 HPRD:00528 GADD45A DDIT1|GADD45 growth arrest and DNA-damage-inducible, alpha protein-coding 13-PTNLD9-TUMOR_peak_47496 chr7 51408308 51408402 + 3.69080 NA Intergenic Intergenic -23840 NM_001287436 23242 Hs.99141 NM_015198 HPRD:10843 COBL - cordon-bleu WH2 repeat protein protein-coding 13-PTNLD9-TUMOR_peak_54371 chr9 111207037 111207131 + 3.69080 NA Intergenic Intergenic 411191 NM_006686 10880 Hs.534390 NM_006686 ACTL7B Tact1 actin-like 7B protein-coding 13-PTNLD9-TUMOR_peak_48281 chr7 91024606 91024717 + 3.69080 NA Intergenic L1PA3|LINE|L1 130878 NM_003505 8321 Hs.94234 NM_003505 HPRD:04558 FZD1 - frizzled class receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_23330 chr18 57291050 57291222 + 3.69080 NA intron (NM_133459, intron 2 of 10) intron (NM_133459, intron 2 of 10) 73508 NM_133459 147372 Hs.34333 NM_133459 HPRD:08703 CCBE1 - collagen and calcium binding EGF domains 1 protein-coding 13-PTNLD9-TUMOR_peak_51492 chr8 103822708 103822891 + 3.68661 NA Intergenic CpG 53598 NM_148174 51582 Hs.459106 NM_015878 HPRD:07443 AZIN1 OAZI|OAZIN|ODC1L antizyme inhibitor 1 protein-coding 13-PTNLD9-TUMOR_peak_19446 chr16 57657537 57657663 + 3.68244 NA intron (NM_001145770, intron 1 of 14) intron (NM_001145770, intron 1 of 14) 3690 NM_001145770 9289 Hs.513633 NM_005682 HPRD:06824 GPR56 BFPP|BPPR|TM7LN4|TM7XN1 G protein-coupled receptor 56 protein-coding 13-PTNLD9-TUMOR_peak_465 chr1 12871649 12871743 + 3.67830 NA Intergenic Intergenic 16853 NM_001294139 65121 Hs.454859 NM_023013 HPRD:11272 PRAMEF1 - PRAME family member 1 protein-coding 13-PTNLD9-TUMOR_peak_50756 chr8 42510263 42510357 + 3.67830 NA Intergenic Intergenic -42252 NM_000749 1142 Hs.654576 NM_000749 HPRD:00336 CHRNB3 - cholinergic receptor, nicotinic, beta 3 (neuronal) protein-coding 13-PTNLD9-TUMOR_peak_24873 chr19 38504892 38505031 + 3.67830 NA intron (NM_015073, intron 1 of 21) intron (NM_015073, intron 1 of 21) 107100 NM_015073 23094 Hs.655502 NM_015073 HPRD:18755 SIPA1L3 SPAL3 signal-induced proliferation-associated 1 like 3 protein-coding 13-PTNLD9-TUMOR_peak_32873 chr22 22296838 22296978 + 3.67766 NA intron (NM_014634, intron 2 of 7) intron (NM_014634, intron 2 of 7) 10342 NM_014634 9647 Hs.112728 NM_014634 HPRD:10163 PPM1F CAMKP|CaMKPase|FEM-2|POPX2|hFEM-2 protein phosphatase, Mg2+/Mn2+ dependent, 1F protein-coding 13-PTNLD9-TUMOR_peak_3329 chr1 145575459 145575570 + 3.67766 NA promoter-TSS (NM_006099) promoter-TSS (NM_006099) -474 NM_006099 10401 Hs.435761 NM_006099 HPRD:09068 PIAS3 ZMIZ5 protein inhibitor of activated STAT, 3 protein-coding 13-PTNLD9-TUMOR_peak_29551 chr2 202123030 202123232 + 3.67727 NA intron (NR_111983, intron 1 of 8) intron (NR_111983, intron 1 of 8) 377 NR_111983 841 Hs.599762 NM_001228 HPRD:03459 CASP8 ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5 caspase 8, apoptosis-related cysteine peptidase protein-coding 13-PTNLD9-TUMOR_peak_24156 chr19 13999173 13999278 + 3.67636 NA intron (NM_024323, intron 6 of 7) intron (NM_024323, intron 6 of 7) 11162 NM_001098622 342977 Hs.127982 NM_001098622 NANOS3 NANOS1L|NOS3 nanos homolog 3 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_24440 chr19 19144022 19144198 + 3.67636 NA promoter-TSS (NM_033415) promoter-TSS (NM_033415) 270 NM_001017392 10147 Hs.515271 NM_014884 HPRD:10469 SUGP2 SFRS14 SURP and G patch domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_4013 chr1 158087651 158087798 + 3.67636 NA Intergenic Intergenic 22706 NR_033946 646268 Hs.506902 NR_033946 ENSG00000231666 LOC646268 - hCG1654703 ncRNA 13-PTNLD9-TUMOR_peak_42243 chr5 138089129 138089395 + 3.67636 NA intron (NM_001290309, intron 1 of 16) CpG 177 NM_001903 1495 Hs.445981 NM_001903 HPRD:00285 CTNNA1 CAP102 catenin (cadherin-associated protein), alpha 1, 102kDa protein-coding 13-PTNLD9-TUMOR_peak_131 chr1 2406446 2406631 + 3.66686 NA Intergenic Intergenic -1216 NM_014638 9651 Hs.170156 NM_014638 ENSG00000149527 PLCH2 PLC-eta2|PLCL4|PLCeta2 phospholipase C, eta 2 protein-coding 13-PTNLD9-TUMOR_peak_26980 chr2 56150553 56150801 + 3.66686 NA intron (NM_001039348, intron 1 of 11) CpG 621 NM_001039349 2202 Hs.76224 NM_004105 HPRD:03331 EFEMP1 DHRD|DRAD|FBLN3|FBNL|FIBL-3|MLVT|MTLV|S1-5 EGF containing fibulin-like extracellular matrix protein 1 protein-coding 13-PTNLD9-TUMOR_peak_48393 chr7 97268482 97268670 + 3.66686 NA Intergenic MLT1G3|LTR|ERVL-MaLR -92695 NM_003182 6863 Hs.2563 NM_003182 HPRD:08876 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin, precursor 1 protein-coding 13-PTNLD9-TUMOR_peak_28233 chr2 120013610 120013704 + 3.66686 NA intron (NM_001008410, intron 4 of 4) intron (NM_001008410, intron 4 of 4) 32273 NM_018234 55240 Hs.647822 NM_018234 HPRD:10285 STEAP3 AHMIO2|STMP3|TSAP6|dudlin-2 STEAP family member 3, metalloreductase protein-coding 13-PTNLD9-TUMOR_peak_27324 chr2 74942613 74942818 + 3.66637 NA Intergenic CpG 61360 NR_073398 10505 Hs.25887 NM_004263 SEMA4F M-SEMA|PRO2353|S4F|SEMAM|SEMAW|m-Sema-M sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4F protein-coding 13-PTNLD9-TUMOR_peak_48280 chr7 91024298 91024392 + 3.66637 NA Intergenic L1PA3|LINE|L1 130562 NM_003505 8321 Hs.94234 NM_003505 HPRD:04558 FZD1 - frizzled class receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_6099 chr1 243645590 243645803 + 3.66637 NA intron (NM_006642, intron 16 of 17) intron (NM_006642, intron 16 of 17) 136218 NR_039824 100616343 NR_039824 MIR4677 - microRNA 4677 ncRNA 13-PTNLD9-TUMOR_peak_54358 chr9 110539068 110539162 + 3.66637 NA Intergenic SVA_F|Other|Other -287068 NM_004235 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel-like factor 4 (gut) protein-coding 13-PTNLD9-TUMOR_peak_53878 chr9 89952002 89952201 + 3.65735 NA Intergenic Intergenic -160042 NM_001288731 1612 Hs.380277 NM_004938 HPRD:02902 DAPK1 DAPK death-associated protein kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_49829 chr7 157066419 157066519 + 3.65735 NA Intergenic Intergenic -63241 NM_005494 10049 Hs.490745 NM_005494 HPRD:07107 DNAJB6 DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|MRJ|MSJ-1 DnaJ (Hsp40) homolog, subfamily B, member 6 protein-coding 13-PTNLD9-TUMOR_peak_42085 chr5 133389561 133389801 + 3.65735 NA Intergenic Intergenic -48857 NM_003374 7416 Hs.519320 NM_003374 HPRD:05137 VDAC1 PORIN|VDAC-1 voltage-dependent anion channel 1 protein-coding 13-PTNLD9-TUMOR_peak_7905 chr10 85931540 85931756 + 3.65735 NA Intergenic Harlequin-int|LTR|ERV1 -1906 NM_207373 387695 Hs.298713 NM_207373 HPRD:12599 C10orf99 UNQ1833 chromosome 10 open reading frame 99 protein-coding 13-PTNLD9-TUMOR_peak_4155 chr1 161509832 161509926 + 3.65735 NA Intergenic Intergenic 9939 NM_001127592 2214 Hs.372679 NM_000569 HPRD:00903 FCGR3A CD16|CD16A|FCG3|FCGR3|FCGRIII|FCR-10|FCRIII|FCRIIIA|IGFR3|IMD20 Fc fragment of IgG, low affinity IIIa, receptor (CD16a) protein-coding 13-PTNLD9-TUMOR_peak_37768 chr4 6310661 6310973 + 3.65735 NA Intergenic LTR12C|LTR|ERV1 39240 NM_006005 7466 Hs.518602 NM_006005 HPRD:05864 WFS1 CTRCT41|WFRS|WFS|WFSL Wolfram syndrome 1 (wolframin) protein-coding 13-PTNLD9-TUMOR_peak_32164 chr21 34638111 34638390 + 3.65735 NA promoter-TSS (NM_000628) promoter-TSS (NM_000628) 315 NR_038974 100288432 Hs.709795 NR_038974 IL10RB-AS1 IFNAR2-AS1 IL10RB antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_20523 chr17 15558732 15558856 + 3.64592 NA intron (NM_006470, intron 3 of 8) intron (NM_006470, intron 3 of 8) 27399 NM_006470 10626 Hs.123534 NM_006470 HPRD:15552 TRIM16 EBBP tripartite motif containing 16 protein-coding 13-PTNLD9-TUMOR_peak_24803 chr19 36623443 36623702 + 3.64152 NA Intergenic Intergenic -7346 NM_001003962 826 Hs.515371 NM_001749 HPRD:00240 CAPNS1 30K|CALPAIN4|CANP|CANPS|CAPN4|CDPS|CSS1 calpain, small subunit 1 protein-coding 13-PTNLD9-TUMOR_peak_35430 chr3 114102770 114102919 + 3.64147 NA promoter-TSS (NM_001164342) promoter-TSS (NM_001164342) -355 NM_001164342 26137 Hs.202577 NM_015642 HPRD:05822 ZBTB20 DPZF|HOF|ODA-8S|ZNF288 zinc finger and BTB domain containing 20 protein-coding 13-PTNLD9-TUMOR_peak_13240 chr12 68142252 68142425 + 3.64147 NA Intergenic MLT1L|LTR|ERVL-MaLR -19083 NR_110063 101927901 Hs.369609 NR_110063 ENSG00000255970 LOC101927901 - uncharacterized LOC101927901 ncRNA 13-PTNLD9-TUMOR_peak_37545 chr4 792913 793063 + 3.64147 NA intron (NM_006651, intron 2 of 3) MER21A|LTR|ERVL -17352 NR_036511 100129917 Hs.731755 NR_036511 ENSG00000249592 LOC100129917 - uncharacterized LOC100129917 ncRNA 13-PTNLD9-TUMOR_peak_54626 chr9 123028171 123028355 + 3.63891 NA Intergenic Intergenic -20935 NR_029604 406939 NR_029604 miRBase:MI0000262 MIR147A MIR147|MIRN147|hsa-mir-147a microRNA 147a ncRNA 13-PTNLD9-TUMOR_peak_29886 chr2 221090057 221090194 + 3.63891 NA Intergenic MIRc|SINE|MIR -318839 NR_036228 100422959 NR_036228 miRBase:MI0015874 MIR4268 - microRNA 4268 ncRNA 13-PTNLD9-TUMOR_peak_5095 chr1 203506197 203506291 + 3.63891 NA Intergenic MamGypLTR3|LTR|Gypsy 42973 NM_014359 26254 Hs.632468 NM_014359 HPRD:05498 OPTC OPT opticin protein-coding 13-PTNLD9-TUMOR_peak_16485 chr14 94406122 94406216 + 3.63891 NA intron (NM_016150, intron 5 of 7) CpG-7324 12438 NM_001207072 90050 Hs.525550 NM_138344 HPRD:12636 FAM181A C14orf152 family with sequence similarity 181, member A protein-coding 13-PTNLD9-TUMOR_peak_39601 chr4 150124536 150124782 + 3.63891 NA Intergenic Intergenic -760987 NM_001166104 4306 Hs.163924 NM_000901 HPRD:02991 NR3C2 MCR|MLR|MR|NR3C2VIT nuclear receptor subfamily 3, group C, member 2 protein-coding 13-PTNLD9-TUMOR_peak_30333 chr20 3994779 3994894 + 3.63891 NA intron (NM_001134338, intron 1 of 6) intron (NM_001134338, intron 1 of 6) 1218 NM_007219 11237 Hs.589884 NM_007219 HPRD:10198 RNF24 G1L ring finger protein 24 protein-coding 13-PTNLD9-TUMOR_peak_53639 chr9 75201780 75201886 + 3.63891 NA intron (NM_138691, intron 2 of 23) intron (NM_138691, intron 2 of 23) 65116 NM_138691 117531 Hs.670211 NM_138691 HPRD:05988 TMC1 DFNA36|DFNB11|DFNB7 transmembrane channel-like 1 protein-coding 13-PTNLD9-TUMOR_peak_40263 chr5 9124324 9124451 + 3.63891 NA intron (NM_003966, intron 13 of 22) intron (NM_003966, intron 13 of 22) -70380 NR_039779 100616326 NR_039779 MIR4636 - microRNA 4636 ncRNA 13-PTNLD9-TUMOR_peak_7313 chr10 49653145 49653239 + 3.63891 NA TTS (NM_001256025) TTS (NM_001256025) 43537 NM_001278548 5599 Hs.138211 NM_002750 HPRD:03100 MAPK8 JNK|JNK-46|JNK1|JNK1A2|JNK21B1/2|PRKM8|SAPK1|SAPK1c mitogen-activated protein kinase 8 protein-coding 13-PTNLD9-TUMOR_peak_34875 chr3 66501188 66501282 + 3.63891 NA intron (NM_015541, intron 3 of 18) intron (NM_015541, intron 3 of 18) 49610 NM_015541 26018 Hs.518055 NM_015541 HPRD:10057 LRIG1 LIG-1|LIG1 leucine-rich repeats and immunoglobulin-like domains 1 protein-coding 13-PTNLD9-TUMOR_peak_54212 chr9 101819455 101819621 + 3.63891 NA intron (NM_001855, intron 35 of 41) L1MB7|LINE|L1 -47874 NM_001130916 7046 Hs.494622 NM_004612 HPRD:01822 TGFBR1 AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TGFR-1 transforming growth factor, beta receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_8133 chr10 99681575 99681741 + 3.63891 NA intron (NM_018058, intron 4 of 14) intron (NM_018058, intron 4 of 14) 71663 NM_001010917 401647 Hs.567524 NM_001010917 HPRD:16579 GOLGA7B C10orf132|C10orf133|bA451M19.3|bA459F3.4 golgin A7 family, member B protein-coding 13-PTNLD9-TUMOR_peak_49740 chr7 153120533 153120664 + 3.63891 NA Intergenic Intergenic -11279 NR_125776 103724390 Hs.614280 NR_125776 LINC01287 TCONS_l2_00027522 long intergenic non-protein coding RNA 1287 ncRNA 13-PTNLD9-TUMOR_peak_36109 chr3 138618407 138618586 + 3.63870 NA Intergenic L2a|LINE|L2 44366 NR_121649 103344930 Hs.195033 NR_121649 LINC01391 - long intergenic non-protein coding RNA 1391 ncRNA 13-PTNLD9-TUMOR_peak_10292 chr11 66115534 66115707 + 3.63870 NA promoter-TSS (NM_006876) promoter-TSS (NM_006876) -459 NM_006876 11041 Hs.8526 NM_006876 HPRD:09270 B3GNT1 B3GN-T1|B3GNT6|BETA3GNTI|MDDGA13|iGAT|iGNT UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_28705 chr2 150734562 150734698 + 3.63635 NA Intergenic Intergenic -290300 NM_015702 27249 Hs.5324 NM_015702 HPRD:10781 MMADHC C2orf25|CL25022|cblD methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria protein-coding 13-PTNLD9-TUMOR_peak_9946 chr11 59436946 59437113 + 3.63635 NA promoter-TSS (NM_152716) promoter-TSS (NM_152716) -518 NM_152716 219988 Hs.591960 NM_152716 HPRD:08214 PATL1 Pat1b|hPat1b protein associated with topoisomerase II homolog 1 (yeast) protein-coding 13-PTNLD9-TUMOR_peak_35928 chr3 131262749 131262933 + 3.63635 NA intron (NM_001289112, intron 14 of 15) intron (NM_001289112, intron 14 of 15) -40981 NM_007208 11222 Hs.205163 NM_007208 HPRD:06175 MRPL3 COXPD9|MRL3|RPML3 mitochondrial ribosomal protein L3 protein-coding 13-PTNLD9-TUMOR_peak_38687 chr4 79567431 79567693 + 3.63635 NA intron (NR_038307, intron 1 of 2) intron (NR_038307, intron 1 of 2) 414 NR_038305 100505702 Hs.235795 NR_038303 LINC01094 - long intergenic non-protein coding RNA 1094 ncRNA 13-PTNLD9-TUMOR_peak_4349 chr1 169074960 169075090 + 3.63089 NA promoter-TSS (NM_001677) promoter-TSS (NM_001677) -922 NM_001677 481 Hs.291196 NM_001677 HPRD:01663 ATP1B1 ATP1B ATPase, Na+/K+ transporting, beta 1 polypeptide protein-coding 13-PTNLD9-TUMOR_peak_43189 chr5 176793912 176794035 + 3.63089 NA exon (NM_006480, exon 5 of 15) exon (NM_006480, exon 5 of 15) 9129 NM_006480 10636 Hs.9347 NM_006480 HPRD:03944 RGS14 - regulator of G-protein signaling 14 protein-coding 13-PTNLD9-TUMOR_peak_48570 chr7 100770300 100770404 + 3.62573 NA promoter-TSS (NM_000602) promoter-TSS (NM_000602) -18 NM_000602 5054 Hs.414795 NM_000602 HPRD:01418 SERPINE1 PAI|PAI-1|PAI1|PLANH1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1 protein-coding 13-PTNLD9-TUMOR_peak_554 chr1 17216009 17216211 + 3.62573 NA Intergenic Intergenic -30594 NR_037446 100500876 NR_037446 miRBase:MI0016076 MIR3675 - microRNA 3675 ncRNA 13-PTNLD9-TUMOR_peak_46991 chr7 20278429 20278609 + 3.62573 NA Intergenic Intergenic -21506 NM_182762 346389 Hs.598388 NM_182762 HPRD:12381 MACC1 7A5|SH3BP4L metastasis associated in colon cancer 1 protein-coding 13-PTNLD9-TUMOR_peak_23597 chr19 1077079 1077271 + 3.61890 NA 5' UTR (NM_001282334, exon 1 of 13) 5' UTR (NM_001282334, exon 1 of 13) 542 NM_001282334 23526 Hs.465521 NM_012292 HPRD:03097 HMHA1 ARHGAP45|HA-1|HLA-HA1 histocompatibility (minor) HA-1 protein-coding 13-PTNLD9-TUMOR_peak_34898 chr3 69062408 69062502 + 3.61890 NA intron (NR_103826, intron 1 of 15) CpG 590 NM_001278689 285203 Hs.518059 NM_173654 HPRD:12435 EOGT AER61|AOS4|C3orf64|EOGT1 EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase protein-coding 13-PTNLD9-TUMOR_peak_3756 chr1 153935274 153935368 + 3.61743 NA promoter-TSS (NR_106795) promoter-TSS (NR_106795) -425 NR_106795 102465441 NR_106795 MIR6737 hsa-mir-6737 microRNA 6737 ncRNA 13-PTNLD9-TUMOR_peak_261 chr1 8135615 8135709 + 3.61743 NA Intergenic Intergenic -49269 NM_018948 54206 Hs.605445 NM_018948 HPRD:09218 ERRFI1 GENE-33|MIG-6|MIG6|RALT ERBB receptor feedback inhibitor 1 protein-coding 13-PTNLD9-TUMOR_peak_9639 chr11 44730890 44731029 + 3.61743 NA Intergenic Intergenic -55017 NM_130783 90139 Hs.385634 NM_130783 HPRD:17435 TSPAN18 TSPAN tetraspanin 18 protein-coding 13-PTNLD9-TUMOR_peak_14125 chr12 122468092 122468197 + 3.61743 NA intron (NM_001024808, intron 1 of 5) intron (NM_001024808, intron 1 of 5) 8283 NM_001024808 605 Hs.530970 NM_020993 BCL7A BCL7 B-cell CLL/lymphoma 7A protein-coding 13-PTNLD9-TUMOR_peak_43023 chr5 171961005 171961111 + 3.61743 NA Intergenic L2b|LINE|L2 -79531 NM_001017995 285590 Hs.285666 NM_001017995 HPRD:18591 SH3PXD2B FAD49|FTHS|HOFI|KIAA1295|TKS4|TSK4 SH3 and PX domains 2B protein-coding 13-PTNLD9-TUMOR_peak_20122 chr16 89387545 89387788 + 3.61483 NA intron (NM_001242885, intron 1 of 2) intron (NM_001242885, intron 1 of 2) 125 NM_001242885 100287036 Hs.656995 NM_001242885 LOC100287036 - uncharacterized LOC100287036 protein-coding 13-PTNLD9-TUMOR_peak_40165 chr5 959110 959285 + 3.61469 NA Intergenic Intergenic 38258 NR_104614 100506688 Hs.532063 NM_001242737 LOC100506688 - uncharacterized LOC100506688 ncRNA 13-PTNLD9-TUMOR_peak_7412 chr10 54789634 54789923 + 3.61469 NA Intergenic LTR30|LTR|ERV1 -258318 NM_000242 4153 Hs.499674 NM_000242 HPRD:01107 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose-binding lectin (protein C) 2, soluble protein-coding 13-PTNLD9-TUMOR_peak_28525 chr2 134227997 134228181 + 3.61469 NA intron (NM_207481, intron 3 of 17) L1PA2|LINE|L1 -31877 NR_107007 102466866 NR_107007 MIR7853 hsa-mir-7853 microRNA 7853 ncRNA 13-PTNLD9-TUMOR_peak_43241 chr5 177659371 177659559 + 3.61469 NA non-coding (NR_103509, exon 1 of 10) non-coding (NR_103509, exon 1 of 10) 358 NM_153373 85007 Hs.248746 NM_153373 HPRD:18482 PHYKPL AGXT2L2|PHLU 5-phosphohydroxy-L-lysine phospho-lyase protein-coding 13-PTNLD9-TUMOR_peak_13412 chr12 81483341 81483454 + 3.61107 NA intron (NM_024560, intron 1 of 15) intron (NM_024560, intron 1 of 15) 11588 NM_024560 79611 Hs.259559 NM_024560 HPRD:13385 ACSS3 - acyl-CoA synthetase short-chain family member 3 protein-coding 13-PTNLD9-TUMOR_peak_25964 chr2 3227121 3227262 + 3.61107 NA intron (NM_003310, intron 4 of 8) intron (NM_003310, intron 4 of 8) -97393 NR_110228 101927554 Hs.638446 NR_110228 ENSG00000234423 LINC01250 - long intergenic non-protein coding RNA 1250 ncRNA 13-PTNLD9-TUMOR_peak_17598 chr15 72410510 72410710 + 3.61107 NA promoter-TSS (NM_145204) promoter-TSS (NM_145204) -21 NM_001172111 123228 Hs.513002 NM_145204 HPRD:09784 SENP8 DEN1|NEDP1|PRSC2 SUMO/sentrin specific peptidase family member 8 protein-coding 13-PTNLD9-TUMOR_peak_9049 chr11 10921474 10921662 + 3.61107 NA Intergenic Intergenic 41804 NR_034137 729013 Hs.726427 NR_034137 ENSG00000247271 ZBED5-AS1 - ZBED5 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_56600 chrX 149672246 149672354 + 3.61107 NA intron (NM_001177466, intron 4 of 5) intron (NM_001177466, intron 4 of 5) 58580 NM_005491 10046 Hs.20136 NM_005491 HPRD:02126 MAMLD1 CG1|CXorf6|F18|HYSP2 mastermind-like domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_33257 chr22 38625778 38626078 + 3.61107 NA intron (NM_012264, intron 5 of 8) intron (NM_012264, intron 5 of 8) 26901 NM_001161573 23764 Hs.517617 NM_012323 HPRD:05343 MAFF U-MAF|hMafF v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog F protein-coding 13-PTNLD9-TUMOR_peak_51680 chr8 118119057 118119182 + 3.61107 NA intron (NM_001172815, intron 2 of 10) intron (NM_001172815, intron 2 of 10) -28218 NM_173851 169026 Hs.532270 NM_173851 HPRD:15370 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 (zinc transporter), member 8 protein-coding 13-PTNLD9-TUMOR_peak_46698 chr7 1760822 1760991 + 3.61107 NA intron (NM_001128636, intron 1 of 1) intron (NM_001128636, intron 1 of 1) 12108 NM_001128636 392617 Hs.42896 NM_001128636 ENSG00000225968 ELFN1 PPP1R28 extracellular leucine-rich repeat and fibronectin type III domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_18811 chr16 24505162 24505389 + 3.61107 NA Intergenic L1MB1|LINE|L1 -45633 NM_006910 5930 Hs.188553 NM_006910 HPRD:02964 RBBP6 MY038|P2P-R|PACT|RBQ-1|SNAMA retinoblastoma binding protein 6 protein-coding 13-PTNLD9-TUMOR_peak_2307 chr1 85069695 85069858 + 3.61107 NA intron (NR_125761, intron 2 of 2) LTR25-int|LTR|ERV1 16938 NR_125761 103695366 Hs.576097 NR_125761 LINC01461 TCONS_00001552 long intergenic non-protein coding RNA 1461 ncRNA 13-PTNLD9-TUMOR_peak_2806 chr1 110648888 110648982 + 3.61107 NA Intergenic Intergenic -6127 NM_203412 164153 Hs.374027 NM_203412 HPRD:17314 UBL4B - ubiquitin-like 4B protein-coding 13-PTNLD9-TUMOR_peak_47796 chr7 68923232 68923363 + 3.61107 NA Intergenic Intergenic 139184 NR_108105 100507468 Hs.362492 NR_108105 LOC100507468 - uncharacterized LOC100507468 ncRNA 13-PTNLD9-TUMOR_peak_12492 chr12 33674087 33674190 + 3.61107 NA Intergenic L1PA6|LINE|L1 -81384 NM_198992 341359 Hs.118703 NM_198992 SYT10 - synaptotagmin X protein-coding 13-PTNLD9-TUMOR_peak_5953 chr1 235256666 235256760 + 3.60909 NA Intergenic Intergenic 34539 NR_002956 677802 Hs.744743 NR_002956 SNORA14B ACA14b small nucleolar RNA, H/ACA box 14B snoRNA 13-PTNLD9-TUMOR_peak_34592 chr3 50306370 50306543 + 3.60323 NA promoter-TSS (NM_001290061) promoter-TSS (NM_001290061) 29 NM_001290060 7869 Hs.82222 NM_004636 SEMA3B LUCA-1|SEMA5|SEMAA|SemA|semaV sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B protein-coding 13-PTNLD9-TUMOR_peak_39769 chr4 159733019 159733189 + 3.59349 NA intron (NM_020840, intron 1 of 16) L2a|LINE|L2 42922 NM_020840 57600 Hs.652441 NM_020840 ENSG00000052795 FNIP2 FNIPL|MAPO1 folliculin interacting protein 2 protein-coding 13-PTNLD9-TUMOR_peak_6469 chr10 11785012 11785111 + 3.59349 NA intron (NM_024693, intron 1 of 4) intron (NM_024693, intron 1 of 4) 705 NM_024693 79746 Hs.22242 NM_024693 HPRD:10930 ECHDC3 - enoyl CoA hydratase domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_43094 chr5 173391086 173391259 + 3.59349 NA Intergenic LTR9|LTR|ERV1 -24990 NM_001144954 133491 Hs.131469 NM_001144954 ENSG00000185056 C5orf47 - chromosome 5 open reading frame 47 protein-coding 13-PTNLD9-TUMOR_peak_56633 chrX 151152898 151153002 + 3.59349 NA Intergenic MLT1L|LTR|ERVL-MaLR -9799 NM_004961 2564 Hs.22785 NM_004961 HPRD:02104 GABRE - gamma-aminobutyric acid (GABA) A receptor, epsilon protein-coding 13-PTNLD9-TUMOR_peak_54359 chr9 110539475 110539569 + 3.59349 NA Intergenic SVA_F|Other|Other -287475 NM_004235 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel-like factor 4 (gut) protein-coding 13-PTNLD9-TUMOR_peak_32196 chr21 35320501 35320595 + 3.59349 NA promoter-TSS (NM_001288961) promoter-TSS (NM_001288961) -682 NM_001288961 400863 Hs.729814 NM_207472 LOC400863 - uncharactered LOC400863 protein-coding 13-PTNLD9-TUMOR_peak_14429 chr13 24152976 24153126 + 3.59349 NA promoter-TSS (NM_001204458) promoter-TSS (NM_001204458) -448 NM_018647 55504 Hs.149168 NM_018647 HPRD:05838 TNFRSF19 TAJ|TAJ-alpha|TRADE|TROY tumor necrosis factor receptor superfamily, member 19 protein-coding 13-PTNLD9-TUMOR_peak_29948 chr2 227701007 227701175 + 3.59349 NA intron (NM_032276, intron 1 of 6) CpG 420 NM_001167608 84236 Hs.471514 NM_032276 HPRD:13206 RHBDD1 RRP4 rhomboid domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_36800 chr3 177002294 177002427 + 3.59184 NA Intergenic Intergenic -9870 NR_047465 100820709 Hs.518409 NR_047465 LINC00501 - long intergenic non-protein coding RNA 501 ncRNA 13-PTNLD9-TUMOR_peak_17022 chr15 35279340 35279442 + 3.59184 NA intron (NM_014106, intron 2 of 2) intron (NM_014106, intron 2 of 2) 1106 NM_014106 54989 Hs.744990 NM_014106 HPRD:16918 ZNF770 PRO1914 zinc finger protein 770 protein-coding 13-PTNLD9-TUMOR_peak_33515 chr22 50742279 50742448 + 3.58889 NA intron (NM_012401, intron 1 of 36) intron (NM_012401, intron 1 of 36) 3638 NM_012401 23654 Hs.3989 NM_012401 HPRD:05050 PLXNB2 MM1|Nbla00445|PLEXB2|dJ402G11.3 plexin B2 protein-coding 13-PTNLD9-TUMOR_peak_14537 chr13 31234135 31234326 + 3.58309 NA TTS (NM_005800) TTS (NM_005800) 42400 NM_005800 10208 Hs.533831 NM_005800 HPRD:09833 USPL1 C13orf22|D13S106E|bA121O19.1 ubiquitin specific peptidase like 1 protein-coding 13-PTNLD9-TUMOR_peak_27447 chr2 85864711 85864828 + 3.58309 NA intron (NM_001256728, intron 7 of 11) intron (NM_001256728, intron 7 of 11) 21554 NM_001256725 10713 Hs.654745 NM_006590 HPRD:07165 USP39 65K|HSPC332|SAD1|SNRNP65 ubiquitin specific peptidase 39 protein-coding 13-PTNLD9-TUMOR_peak_26767 chr2 45292115 45292275 + 3.58309 NA Intergenic L1PA2|LINE|L1 -55653 NM_016932 10736 Hs.101937 NM_016932 HPRD:05408 SIX2 - SIX homeobox 2 protein-coding 13-PTNLD9-TUMOR_peak_36942 chr3 183463261 183463355 + 3.58309 NA intron (NM_018023, intron 8 of 30) intron (NM_018023, intron 8 of 30) 47702 NM_018023 55689 Hs.632575 NM_018023 HPRD:07652 YEATS2 - YEATS domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_13366 chr12 75724076 75724170 + 3.58309 NA promoter-TSS (NM_032606) promoter-TSS (NM_032606) -287 NM_001286547 84698 Hs.733835 NM_032606 HPRD:09659 CAPS2 - calcyphosine 2 protein-coding 13-PTNLD9-TUMOR_peak_19475 chr16 58298891 58299027 + 3.58309 NA intron (NM_001142302, intron 5 of 7) intron (NM_001142302, intron 5 of 7) 15119 NM_014157 29070 Hs.11614 NM_014157 HPRD:07121 CCDC113 - coiled-coil domain containing 113 protein-coding 13-PTNLD9-TUMOR_peak_34326 chr3 41723097 41723218 + 3.58309 NA intron (NM_017886, intron 28 of 36) intron (NM_017886, intron 28 of 36) 280503 NM_017886 54986 Hs.656192 NM_017886 HPRD:07928 ULK4 FAM7C1|REC01035 unc-51 like kinase 4 protein-coding 13-PTNLD9-TUMOR_peak_16767 chr15 22208331 22208504 + 3.58309 NA Intergenic Intergenic -62615 NR_028506 440225 Hs.722451 NR_028506 ENSG00000258997 NF1P2 NF1HHS neurofibromin 1 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_6697 chr10 24620511 24620713 + 3.58309 NA intron (NM_001282767, intron 2 of 18) intron (NM_001282767, intron 2 of 18) 55998 NR_030334 693188 NR_030334 MIR603 MIRN603|hsa-mir-603 microRNA 603 ncRNA 13-PTNLD9-TUMOR_peak_19998 chr16 85833712 85833835 + 3.58203 NA promoter-TSS (NM_001142288) promoter-TSS (NM_001142288) 600 NM_001861 1327 Hs.433419 NM_001861 HPRD:00466 COX4I1 COX4|COX4-1|COXIV cytochrome c oxidase subunit IV isoform 1 protein-coding 13-PTNLD9-TUMOR_peak_9484 chr11 34052026 34052181 + 3.56998 NA Intergenic Intergenic -21127 NM_005898 4076 Hs.471818 NM_005898 HPRD:03108 CAPRIN1 GPIAP1|GPIP137|GRIP137|M11S1|RNG105|p137GPI cell cycle associated protein 1 protein-coding 13-PTNLD9-TUMOR_peak_11348 chr11 117588337 117588431 + 3.56998 NA intron (NM_020693, intron 3 of 32) L2b|LINE|L2 79592 NM_020693 57453 Hs.659513 NM_020693 HPRD:10921 DSCAML1 - Down syndrome cell adhesion molecule like 1 protein-coding 13-PTNLD9-TUMOR_peak_7943 chr10 88718747 88718940 + 3.56998 NA intron (NM_003087, intron 1 of 4) intron (NM_003087, intron 1 of 4) 555 NM_003087 6623 Hs.349470 NM_003087 HPRD:04297 SNCG BCSG1|SR synuclein, gamma (breast cancer-specific protein 1) protein-coding 13-PTNLD9-TUMOR_peak_10169 chr11 64571377 64571473 + 3.56998 NA promoter-TSS (NM_004579) promoter-TSS (NM_004579) -712 NM_004579 5871 Hs.534341 NM_004579 HPRD:04408 MAP4K2 BL44|GCK|RAB8IP mitogen-activated protein kinase kinase kinase kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_733 chr1 25594318 25594452 + 3.56998 NA Intergenic CpG -4592 NM_001282871 6007 Hs.449968 NM_016124 HPRD:00199 RHD CD240D|DIIIc|RH|RH30|RHCED|RHDVA(TT)|RHDel|RHPII|RHXIII|Rh4|RhDCw|RhII|RhK562-II|RhPI Rh blood group, D antigen protein-coding 13-PTNLD9-TUMOR_peak_28069 chr2 112240763 112240894 + 3.56998 NA intron (NR_024373, intron 1 of 1) intron (NR_024373, intron 1 of 1) 11864 NR_015395 541471 Hs.560805 NR_015395 ENSG00000172965 MIR4435-1HG AGD2|LINC00978 MIR4435-1 host gene (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_44797 chr6 35996112 35996225 + 3.56868 NA intron (NM_139014, intron 1 of 10) CpG 714 NM_139012 1432 Hs.485233 NM_001315 HPRD:02619 MAPK14 CSBP|CSBP1|CSBP2|CSPB1|EXIP|Mxi2|PRKM14|PRKM15|RK|SAPK2A|p38|p38ALPHA mitogen-activated protein kinase 14 protein-coding 13-PTNLD9-TUMOR_peak_27014 chr2 61698729 61698863 + 3.56296 NA promoter-TSS (NM_014709) promoter-TSS (NM_014709) -947 NM_014709 9736 Hs.644708 NM_014709 HPRD:11665 USP34 - ubiquitin specific peptidase 34 protein-coding 13-PTNLD9-TUMOR_peak_22830 chr18 24128487 24128633 + 3.56296 NA promoter-TSS (NM_001142730) promoter-TSS (NM_001142730) -60 NM_001142730 284252 Hs.526630 NM_198991 HPRD:11059 KCTD1 C18orf5|SENS potassium channel tetramerization domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_19994 chr16 85786795 85786958 + 3.56296 NA intron (NR_107005, intron 6 of 6) intron (NR_107005, intron 6 of 6) -2187 NM_206967 404550 Hs.461655 NM_206967 HPRD:14460 C16orf74 - chromosome 16 open reading frame 74 protein-coding 13-PTNLD9-TUMOR_peak_22874 chr18 29259260 29259365 + 3.55547 NA intron (NM_004775, intron 1 of 8) intron (NM_004775, intron 1 of 8) 5374 NM_004775 9331 Hs.591063 NM_004775 HPRD:06808 B4GALT6 B4Gal-T6|beta4Gal-T6 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 6 protein-coding 13-PTNLD9-TUMOR_peak_27519 chr2 87911633 87911778 + 3.55547 NA Intergenic Intergenic -17569 NR_039634 100616499 NR_039634 miRBase:MI0016775 MIR4435-1 - microRNA 4435-1 ncRNA 13-PTNLD9-TUMOR_peak_3639 chr1 151742349 151742475 + 3.55547 NA intron (NM_001301371, intron 3 of 4) SVA_C|Other|Other 3281 NM_016178 51686 Hs.713789 NM_016178 HPRD:18670 OAZ3 AZ3|OAZ-t|TISP15 ornithine decarboxylase antizyme 3 protein-coding 13-PTNLD9-TUMOR_peak_51170 chr8 76242652 76242831 + 3.55547 NA Intergenic Intergenic -5765 NR_103849 101805492 Hs.571424 NR_103848 CASC9 LINC00981 cancer susceptibility candidate 9 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_2361 chr1 87311944 87312084 + 3.55547 NA Intergenic Intergenic 68093 NM_004261 9403 Hs.362728 NM_004261 HPRD:09376 SEP15 - 15 kDa selenoprotein protein-coding 13-PTNLD9-TUMOR_peak_4399 chr1 171975078 171975260 + 3.55547 NA intron (NM_001136127, intron 4 of 19) intron (NM_001136127, intron 4 of 19) -132779 NR_036066 100422882 NR_036066 MIR3120 - microRNA 3120 ncRNA 13-PTNLD9-TUMOR_peak_31038 chr20 38615365 38615489 + 3.55547 NA Intergenic Intergenic -17676 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 - long intergenic non-protein coding RNA 1370 ncRNA 13-PTNLD9-TUMOR_peak_16928 chr15 31214025 31214232 + 3.55547 NA intron (NM_014967, intron 7 of 14) intron (NM_014967, intron 7 of 14) 18052 NM_001146096 22909 Hs.584863 NM_014967 HPRD:17205 FAN1 KIAA1018|KMIN|MTMR15 FANCD2/FANCI-associated nuclease 1 protein-coding 13-PTNLD9-TUMOR_peak_53786 chr9 85538379 85538694 + 3.55547 NA Intergenic Intergenic 139507 NM_152573 158158 Hs.129136 NM_152573 HPRD:08337 RASEF RAB45 RAS and EF-hand domain containing protein-coding 13-PTNLD9-TUMOR_peak_54624 chr9 122818071 122818231 + 3.55547 NA Intergenic L1PA2|LINE|L1 189177 NR_029604 406939 NR_029604 miRBase:MI0000262 MIR147A MIR147|MIRN147|hsa-mir-147a microRNA 147a ncRNA 13-PTNLD9-TUMOR_peak_40425 chr5 16785341 16785455 + 3.55547 NA intron (NM_012334, intron 4 of 40) intron (NM_012334, intron 4 of 40) 150987 NM_012334 4651 Hs.481720 NM_012334 HPRD:03283 MYO10 - myosin X protein-coding 13-PTNLD9-TUMOR_peak_27164 chr2 69002020 69002212 + 3.55547 NA 5' UTR (NM_001166276, exon 1 of 10) 5' UTR (NM_001166276, exon 1 of 10) 183 NM_001166276 9938 Hs.531807 NM_014882 HPRD:09805 ARHGAP25 HEL-S-308|KAIA0053 Rho GTPase activating protein 25 protein-coding 13-PTNLD9-TUMOR_peak_27213 chr2 70528521 70528780 + 3.55547 NA intron (NM_032822, intron 1 of 2) CpG 570 NM_032822 84908 Hs.516077 NM_032822 HPRD:07866 FAM136A - family with sequence similarity 136, member A protein-coding 13-PTNLD9-TUMOR_peak_49126 chr7 131304828 131304922 + 3.55201 NA Intergenic Intergenic -63499 NM_001018111 5420 Hs.744213 NM_005397 HPRD:04025 PODXL Gp200|PC|PCLP|PCLP-1 podocalyxin-like protein-coding 13-PTNLD9-TUMOR_peak_10792 chr11 82905666 82905760 + 3.55201 NA exon (NM_001300975, exon 1 of 11) exon (NM_001300975, exon 1 of 11) 932 NR_125355 338699 Hs.503438 NM_182603 HPRD:08230 ANKRD42 PPP1R79|SARP ankyrin repeat domain 42 protein-coding 13-PTNLD9-TUMOR_peak_41435 chr5 81573934 81574232 + 3.55201 NA intron (NM_001025, intron 1 of 3) CpG 152 NM_001025 6228 Hs.527193 NM_001025 HPRD:04729 RPS23 S23 ribosomal protein S23 protein-coding 13-PTNLD9-TUMOR_peak_8720 chr11 287787 287881 + 3.55201 NA Intergenic L2a|LINE|L2 -1304 NM_025092 80162 Hs.353181 NM_025092 HPRD:07999 ATHL1 - ATH1, acid trehalase-like 1 (yeast) protein-coding 13-PTNLD9-TUMOR_peak_33119 chr22 31477197 31477315 + 3.55201 NA promoter-TSS (NM_134270) promoter-TSS (NM_134270) -26 NM_006932 6525 Hs.149098 NM_006932 HPRD:03675 SMTN - smoothelin protein-coding 13-PTNLD9-TUMOR_peak_33781 chr3 11761939 11762244 + 3.54909 NA 5' UTR (NM_014667, exon 1 of 6) 5' UTR (NM_014667, exon 1 of 6) 151 NM_001284390 9686 Hs.740389 NM_014667 HPRD:11672 VGLL4 VGL-4 vestigial-like family member 4 protein-coding 13-PTNLD9-TUMOR_peak_30411 chr20 10652208 10652345 + 3.54909 NA intron (NM_000214, intron 2 of 25) intron (NM_000214, intron 2 of 25) 2418 NM_000214 182 Hs.224012 NM_000214 HPRD:03562 JAG1 AGS|AHD|AWS|CD339|HJ1|JAGL1 jagged 1 protein-coding 13-PTNLD9-TUMOR_peak_52875 chr9 20658694 20658809 + 3.54628 NA 5' UTR (NM_017794, exon 2 of 46) 5' UTR (NM_017794, exon 2 of 46) 443 NM_017794 54914 Hs.136247 NM_017794 HPRD:11162 FOCAD KIAA1797 focadhesin protein-coding 13-PTNLD9-TUMOR_peak_17938 chr15 89525561 89525738 + 3.54628 NA Intergenic Intergenic -68986 NM_001114614 4240 Hs.3745 NM_005928 HPRD:03789 MFGE8 BA46|EDIL1|HMFG|HsT19888|MFG-E8|MFGM|OAcGD3S|SED1|SPAG10|hP47 milk fat globule-EGF factor 8 protein protein-coding 13-PTNLD9-TUMOR_peak_18447 chr16 9171194 9171355 + 3.54628 NA Intergenic Intergenic -14263 NM_014117 29035 Hs.221497 NM_014117 C16orf72 PRO0149 chromosome 16 open reading frame 72 protein-coding 13-PTNLD9-TUMOR_peak_33767 chr3 11267440 11267622 + 3.54628 NA promoter-TSS (NM_001098211) promoter-TSS (NM_001098211) -138 NM_001098211 3269 Hs.1570 NM_000861 HPRD:02544 HRH1 H1-R|hisH1 histamine receptor H1 protein-coding 13-PTNLD9-TUMOR_peak_36281 chr3 145968568 145968714 + 3.53077 NA promoter-TSS (NM_001128305) promoter-TSS (NM_001128305) 10 NM_001128305 57088 Hs.477869 NM_020353 HPRD:07401 PLSCR4 TRA1 phospholipid scramblase 4 protein-coding 13-PTNLD9-TUMOR_peak_4167 chr1 161735976 161736106 + 3.53077 NA promoter-TSS (NM_007348) promoter-TSS (NM_007348) 7 NM_007348 22926 Hs.492740 NM_007348 HPRD:16118 ATF6 ATF6A activating transcription factor 6 protein-coding 13-PTNLD9-TUMOR_peak_37346 chr3 194500576 194500817 + 3.52816 NA non-coding (NR_037891, exon 4 of 4) non-coding (NR_037891, exon 4 of 4) 71546 NR_037891 100507391 Hs.590099 NR_037891 ENSG00000237222 LOC100507391 - uncharacterized LOC100507391 ncRNA 13-PTNLD9-TUMOR_peak_34446 chr3 46853956 46854248 + 3.52816 NA Intergenic CpG 21483 NM_182702 339906 Hs.585127 NM_182702 HPRD:07156 PRSS42 TESSP2 protease, serine, 42 protein-coding 13-PTNLD9-TUMOR_peak_19509 chr16 63651978 63652072 + 3.52816 NA Intergenic MER52A|LTR|ERV1 1503894 NM_001797 1009 Hs.116471 NM_001797 CDH11 CAD11|CDHOB|OB|OSF-4 cadherin 11, type 2, OB-cadherin (osteoblast) protein-coding 13-PTNLD9-TUMOR_peak_35776 chr3 127358703 127358797 + 3.52816 NA intron (NM_015720, intron 2 of 7) MIRb|SINE|MIR 10748 NM_015720 50512 Hs.591290 NM_015720 HPRD:15154 PODXL2 EG|PODLX2 podocalyxin-like 2 protein-coding 13-PTNLD9-TUMOR_peak_17130 chr15 42349405 42349499 + 3.52816 NA Intergenic Intergenic -6551 NM_001206670 123745 Hs.668060 NM_001080490 HPRD:13510 PLA2G4E - phospholipase A2, group IVE protein-coding 13-PTNLD9-TUMOR_peak_50132 chr8 15397776 15397870 + 3.52816 NA 5' UTR (NM_006765, exon 1 of 11) 5' UTR (NM_006765, exon 1 of 11) 227 NM_178234 7991 Hs.426324 NM_006765 HPRD:03228 TUSC3 D8S1992|M33|MRT22|MRT7|N33|OST3A tumor suppressor candidate 3 protein-coding 13-PTNLD9-TUMOR_peak_34885 chr3 67022405 67022618 + 3.52816 NA Intergenic Intergenic -26216 NM_032505 84541 Hs.116665 NM_032505 HPRD:18138 KBTBD8 TA-KRP kelch repeat and BTB (POZ) domain containing 8 protein-coding 13-PTNLD9-TUMOR_peak_42157 chr5 134690135 134690229 + 3.52816 NA intron (NM_001040158, intron 5 of 8) intron (NM_001040158, intron 5 of 8) 44746 NM_138610 9555 Hs.420272 NM_004893 HPRD:13624 H2AFY H2A.y|H2A/y|H2AF12M|H2AFJ|MACROH2A1.1|mH2A1|macroH2A1.2 H2A histone family, member Y protein-coding 13-PTNLD9-TUMOR_peak_54460 chr9 114836807 114836918 + 3.52816 NA intron (NM_001282640, intron 12 of 17) intron (NM_001282640, intron 12 of 17) 100715 NM_022486 64420 Hs.494827 NM_022486 HPRD:15452 SUSD1 - sushi domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_26486 chr2 30448121 30448225 + 3.52816 NA Intergenic Intergenic -6224 NM_030915 81606 Hs.567598 NM_030915 HPRD:13965 LBH - limb bud and heart development protein-coding 13-PTNLD9-TUMOR_peak_2849 chr1 112050911 112051052 + 3.52816 NA intron (NM_001081976, intron 1 of 5) intron (NM_001081976, intron 1 of 5) -4238 NM_000677 140 Hs.281342 NM_000677 HPRD:08984 ADORA3 A3AR|AD026|bA552M11.5 adenosine A3 receptor protein-coding 13-PTNLD9-TUMOR_peak_3350 chr1 146153320 146153414 + 3.52623 NA intron (NR_104217, intron 2 of 17).2 intron (NR_104217, intron 2 of 17).2 -70734 NR_110864 200030 Hs.721588 NM_183372 HPRD:14123 NBPF11 NBPF24 neuroblastoma breakpoint family, member 11 protein-coding 13-PTNLD9-TUMOR_peak_44215 chr6 26197499 26197631 + 3.52498 NA intron (NM_003530, intron 1 of 1) intron (NM_003530, intron 1 of 1) 1956 NM_003530 8351 Hs.532144 NM_003530 HPRD:11905 HIST1H3D H3/b|H3FB histone cluster 1, H3d protein-coding 13-PTNLD9-TUMOR_peak_53283 chr9 41819866 41820039 + 3.52461 NA Intergenic Intergenic 135124 NR_015363 389741 Hs.380240 NM_203448 GLIDR LINC01172 glioblastoma down-regulated RNA ncRNA 13-PTNLD9-TUMOR_peak_46791 chr7 5595709 5595880 + 3.52461 NA Intergenic CpG -25562 NM_001101 60 Hs.520640 NM_001101 HPRD:00032 ACTB BRWS1|PS1TP5BP1 actin, beta protein-coding 13-PTNLD9-TUMOR_peak_10098 chr11 62647837 62647936 + 3.52309 NA promoter-TSS (NM_001013251) promoter-TSS (NM_001013251) -458 NM_001013251 6520 Hs.502769 NM_002394 HPRD:01148 SLC3A2 4F2|4F2HC|4T2HC|CD98|CD98HC|MDU1|NACAE solute carrier family 3 (amino acid transporter heavy chain), member 2 protein-coding 13-PTNLD9-TUMOR_peak_29954 chr2 228270957 228271114 + 3.52309 NA Intergenic Intergenic -27013 NM_024795 79853 Hs.156652 NM_024795 HPRD:08008 TM4SF20 PRO994|SLI5|TCCE518 transmembrane 4 L six family member 20 protein-coding 13-PTNLD9-TUMOR_peak_5374 chr1 213031066 213031256 + 3.52309 NA promoter-TSS (NM_014053) promoter-TSS (NM_014053) 319 NR_027286 642946 Hs.552649 NR_027285 ENSG00000198468 FLVCR1-AS1 LQK1|NCRNA00292 FLVCR1 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_21095 chr17 40706477 40706571 + 3.52309 NA exon (NM_000413, exon 5 of 6) exon (NM_000413, exon 5 of 6) 2540 NM_000413 3292 Hs.654385 NM_000413 HSD17B1 EDH17B2|EDHB17|HSD17|SDR28C1 hydroxysteroid (17-beta) dehydrogenase 1 protein-coding 13-PTNLD9-TUMOR_peak_37581 chr4 1568309 1568465 + 3.52309 NA Intergenic Intergenic 117331 NM_001013622 152877 Hs.143314 NM_001013622 HPRD:12900 FAM53A DNTNP family with sequence similarity 53, member A protein-coding 13-PTNLD9-TUMOR_peak_18209 chr16 1877392 1877523 + 3.51042 NA promoter-TSS (NM_005326) promoter-TSS (NM_005326) 232 NM_001018104 81889 Hs.513265 NM_031208 HPRD:13286 FAHD1 C16orf36|YISKL fumarylacetoacetate hydrolase domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_3882 chr1 155658837 155659048 + 3.51042 NA promoter-TSS (NM_139121) promoter-TSS (NM_139121) 57 NM_004632 7818 Hs.516746 NM_004632 HPRD:03646 DAP3 DAP-3|MRP-S29|MRPS29|bMRP-10 death associated protein 3 protein-coding 13-PTNLD9-TUMOR_peak_34287 chr3 39192580 39192674 + 3.50900 NA intron (NM_033027, intron 1 of 4) intron (NM_033027, intron 1 of 4) 2475 NM_033027 64651 Hs.370950 NM_033027 HPRD:07347 CSRNP1 AXUD1|CSRNP-1|FAM130B|TAIP-3|URAX1 cysteine-serine-rich nuclear protein 1 protein-coding 13-PTNLD9-TUMOR_peak_3196 chr1 143656225 143656319 + 3.50762 NA Intergenic Intergenic -16649 NR_106967 102466225 NR_106967 MIR6077 MIR6077-1|MIR6077-2|hsa-mir-6077-1|hsa-mir-6077-2 microRNA 6077 ncRNA 13-PTNLD9-TUMOR_peak_22418 chr18 1013017 1013128 + 3.50118 NA Intergenic Intergenic 107875 NM_001117 116 Hs.531719 NM_001117 HPRD:02369 ADCYAP1 PACAP adenylate cyclase activating polypeptide 1 (pituitary) protein-coding 13-PTNLD9-TUMOR_peak_7895 chr10 83634358 83634570 + 3.50118 NA promoter-TSS (NM_001165972) promoter-TSS (NM_001165972) -606 NM_001165972 10718 Hs.125119 NM_001010848 HPRD:16115 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 13-PTNLD9-TUMOR_peak_42171 chr5 135170330 135170448 + 3.50118 NA promoter-TSS (NM_145282) promoter-TSS (NM_145282) 24 NM_145282 153328 Hs.412418 NM_145282 HPRD:14098 SLC25A48 - solute carrier family 25, member 48 protein-coding 13-PTNLD9-TUMOR_peak_16630 chr14 103588526 103588620 + 3.50118 NA Intergenic Intergenic -4091 NM_006291 7127 Hs.525607 NM_006291 HPRD:04487 TNFAIP2 B94|EXOC3L3 tumor necrosis factor, alpha-induced protein 2 protein-coding 13-PTNLD9-TUMOR_peak_39016 chr4 106816288 106816439 + 3.50118 NA promoter-TSS (NM_001184692) promoter-TSS (NM_001184692) -234 NM_001033047 255743 Hs.518921 NM_198278 HPRD:14141 NPNT EGFL6L|POEM nephronectin protein-coding 13-PTNLD9-TUMOR_peak_4802 chr1 187486130 187486224 + 3.50118 NA Intergenic MER44B|DNA|TcMar-Tigger 688145 NM_024420 5321 Hs.497200 NM_024420 HPRD:08986 PLA2G4A PLA2G4|cPLA2-alpha phospholipase A2, group IVA (cytosolic, calcium-dependent) protein-coding 13-PTNLD9-TUMOR_peak_56068 chrX 67649144 67649297 + 3.49986 NA intron (NM_002547, intron 2 of 24) AluSz6|SINE|Alu 4079 NM_002547 4983 Hs.128824 NM_002547 HPRD:02130 OPHN1 ARHGAP41|MRX60|OPN1 oligophrenin 1 protein-coding 13-PTNLD9-TUMOR_peak_28925 chr2 162930561 162930726 + 3.49986 NA 5' UTR (NM_001935, exon 1 of 26) 5' UTR (NM_001935, exon 1 of 26) 409 NM_001935 1803 Hs.368912 NM_001935 HPRD:02187 DPP4 ADABP|ADCP2|CD26|DPPIV|TP103 dipeptidyl-peptidase 4 protein-coding 13-PTNLD9-TUMOR_peak_28623 chr2 140054472 140054585 + 3.49986 NA Intergenic Intergenic 399634 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_39838 chr4 169973147 169973399 + 3.49986 NA Intergenic Intergenic -41805 NM_032783 84869 Hs.659311 NM_032783 HPRD:07859 CBR4 SDR45C1 carbonyl reductase 4 protein-coding 13-PTNLD9-TUMOR_peak_36259 chr3 143551411 143551521 + 3.49986 NA intron (NM_173653, intron 1 of 15) intron (NM_173653, intron 1 of 15) 15907 NM_173653 285195 Hs.302257 NM_173653 HPRD:12226 SLC9A9 AUTS16|NHE9 solute carrier family 9, subfamily A (NHE9, cation proton antiporter 9), member 9 protein-coding 13-PTNLD9-TUMOR_peak_17301 chr15 52472150 52472244 + 3.49986 NA promoter-TSS (NM_006578) promoter-TSS (NM_006578) -26 NR_102751 100129973 Hs.569494 NR_102751 LOC100129973 - uncharacterized LOC100129973 ncRNA 13-PTNLD9-TUMOR_peak_40141 chr5 391526 391868 + 3.49986 NA intron (NM_020731, intron 4 of 11) intron (NM_020731, intron 4 of 11) 51561 NM_138464 116349 Hs.446702 NM_138464 ENSG00000221990 C5orf55 - chromosome 5 open reading frame 55 protein-coding 13-PTNLD9-TUMOR_peak_18235 chr16 2198052 2198194 + 3.49986 NA promoter-TSS (NM_014353) promoter-TSS (NM_014353) -528 NM_014353 25837 Hs.3797 NM_014353 HPRD:05676 RAB26 V46133 RAB26, member RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_49595 chr7 149570338 149570464 + 3.49742 NA non-coding (NR_027040, exon 1 of 4) non-coding (NR_027040, exon 1 of 4) 344 NM_001100592 155066 Hs.556998 NM_145230 HPRD:12920 ATP6V0E2 ATP6V0E2L|C7orf32 ATPase, H+ transporting V0 subunit e2 protein-coding 13-PTNLD9-TUMOR_peak_19053 chr16 31084943 31085131 + 3.49133 NA promoter-TSS (NM_001172668) promoter-TSS (NM_001172668) -214 NM_001172668 79759 Hs.102928 NM_024706 HPRD:07828 ZNF668 - zinc finger protein 668 protein-coding 13-PTNLD9-TUMOR_peak_37296 chr3 193848753 193848934 + 3.49133 NA Intergenic Intergenic -5088 NM_005524 3280 Hs.250666 NM_005524 HPRD:00770 HES1 HES-1|HHL|HRY|bHLHb39 hes family bHLH transcription factor 1 protein-coding 13-PTNLD9-TUMOR_peak_9891 chr11 57418456 57418585 + 3.49036 NA Intergenic HERVL-int|LTR|ERVL -1103 NM_145008 219539 Hs.135978 NM_145008 HPRD:08081 YPEL4 - yippee-like 4 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_36065 chr3 136651979 136652308 + 3.49036 NA intron (NM_001190796, intron 1 of 2) L3|LINE|CR1 2826 NM_001190796 4690 Hs.126889 NM_006153 HPRD:02740 NCK1 NCK|NCKalpha|nck-1 NCK adaptor protein 1 protein-coding 13-PTNLD9-TUMOR_peak_35683 chr3 125329146 125329282 + 3.48987 NA Intergenic AluJr|SINE|Alu -14833 NM_022776 114885 Hs.477440 NM_022776 HPRD:09481 OSBPL11 ORP-11|ORP11|OSBP12|TCCCIA00292 oxysterol binding protein-like 11 protein-coding 13-PTNLD9-TUMOR_peak_7792 chr10 77161599 77161701 + 3.48987 NA promoter-TSS (NR_120651) promoter-TSS (NR_120651) 2 NM_032772 84858 Hs.195710 NM_032772 HPRD:15811 ZNF503 NOLZ-1|NOLZ1 zinc finger protein 503 protein-coding 13-PTNLD9-TUMOR_peak_46308 chr6 151186641 151186846 + 3.47603 NA promoter-TSS (NM_001242767) promoter-TSS (NM_001242767) -72 NM_001242769 25902 Hs.591343 NM_015440 HPRD:09967 MTHFD1L FTHFSDC1|MTC1THFS|dJ292B18.2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like protein-coding 13-PTNLD9-TUMOR_peak_40927 chr5 56029907 56030001 + 3.47603 NA Intergenic Intergenic -80946 NM_005921 4214 Hs.653654 NM_005921 ENSG00000095015 MAP3K1 MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6 mitogen-activated protein kinase kinase kinase 1, E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_35411 chr3 113255681 113255832 + 3.47603 NA intron (NM_017699, intron 1 of 24) intron (NM_017699, intron 1 of 24) 4538 NM_017699 54847 Hs.591291 NM_017699 HPRD:12111 SIDT1 B830021E24Rik|SID-1|SID1 SID1 transmembrane family, member 1 protein-coding 13-PTNLD9-TUMOR_peak_31101 chr20 41867022 41867166 + 3.47603 NA Intergenic Intergenic -48537 NM_133170 11122 Hs.526879 NM_007050 HPRD:06690 PTPRT RPTPrho protein tyrosine phosphatase, receptor type, T protein-coding 13-PTNLD9-TUMOR_peak_10253 chr11 65585829 65585923 + 3.47465 NA Intergenic CpG -15534 NM_152760 254122 Hs.591950 NM_152760 HPRD:08090 SNX32 SNX6B sorting nexin 32 protein-coding 13-PTNLD9-TUMOR_peak_41812 chr5 115420702 115420857 + 3.47465 NA promoter-TSS (NM_016144) promoter-TSS (NM_016144) 52 NM_016144 51397 Hs.483136 NM_016144 HPRD:16734 COMMD10 PTD002 COMM domain containing 10 protein-coding 13-PTNLD9-TUMOR_peak_36456 chr3 154674725 154674872 + 3.47465 NA Intergenic MLT1H|LTR|ERVL-MaLR -122638 NM_000902 4311 Hs.307734 NM_000902 HPRD:00392 MME CALLA|CD10|NEP|SFE membrane metallo-endopeptidase protein-coding 13-PTNLD9-TUMOR_peak_41373 chr5 77825410 77825515 + 3.47042 NA intron (NM_005779, intron 3 of 4) AluYb8|SINE|Alu 119186 NM_005779 10184 Hs.79299 NM_005779 HPRD:17272 LHFPL2 - lipoma HMGIC fusion partner-like 2 protein-coding 13-PTNLD9-TUMOR_peak_24910 chr19 39156891 39157145 + 3.47042 NA intron (NM_004924, intron 1 of 20) intron (NM_004924, intron 1 of 20) 18751 NM_004924 81 Hs.270291 NM_004924 ACTN4 ACTININ-4|FSGS|FSGS1 actinin, alpha 4 protein-coding 13-PTNLD9-TUMOR_peak_38885 chr4 90228872 90228992 + 3.47042 NA 5' UTR (NM_198281, exon 1 of 2) 5' UTR (NM_198281, exon 1 of 2) 229 NM_198281 285513 Hs.605082 NM_198281 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 13-PTNLD9-TUMOR_peak_32984 chr22 25390134 25390228 + 3.47042 NA Intergenic Intergenic -33760 NM_001145206 85379 Hs.419171 NM_001145206 ENSG00000197077 KIAA1671 - KIAA1671 protein-coding 13-PTNLD9-TUMOR_peak_55294 chrUn_gl000220 105277 105648 + 3.46244 NA promoter-TSS (NR_046235) promoter-TSS (NR_046235) 38 NR_046235 100861532 NR_046235 RNA45S5 RN45S RNA, 45S pre-ribosomal 5 rRNA 13-PTNLD9-TUMOR_peak_30724 chr20 30154474 30154601 + 3.46216 NA TTS (NR_046853) TTS (NR_046853) 6529 NR_046853 100874042 Hs.743198 NR_046853 ENSG00000230613 HM13-AS1 - HM13 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_47041 chr7 22484243 22484443 + 3.45312 NA intron (NM_001164460, intron 4 of 4) intron (NM_001164460, intron 4 of 4) 55558 NM_001164460 256227 Hs.729825 NM_207342 ENSG00000105889 STEAP1B - STEAP family member 1B protein-coding 13-PTNLD9-TUMOR_peak_3416 chr1 147843725 147843819 + 3.45312 NA intron (NR_102404, intron 17 of 18).2 intron (NR_102404, intron 17 of 18).2 -16662 NR_106967 102466225 NR_106967 MIR6077 MIR6077-1|MIR6077-2|hsa-mir-6077-1|hsa-mir-6077-2 microRNA 6077 ncRNA 13-PTNLD9-TUMOR_peak_31435 chr20 48990581 48990675 + 3.45312 NA Intergenic L2a|LINE|L2 -52749 NR_109950 101927586 Hs.637665 NR_109950 ENSG00000233077 LINC01271 - long intergenic non-protein coding RNA 1271 ncRNA 13-PTNLD9-TUMOR_peak_19368 chr16 54320114 54320264 + 3.45312 NA 5' UTR (NM_024336, exon 1 of 4) 5' UTR (NM_024336, exon 1 of 4) 189 NM_024336 79191 Hs.499205 NM_024336 HPRD:17162 IRX3 IRX-1|IRXB1 iroquois homeobox 3 protein-coding 13-PTNLD9-TUMOR_peak_45090 chr6 43538878 43539007 + 3.45312 NA intron (NM_020750, intron 3 of 31) intron (NM_020750, intron 3 of 31) 4870 NM_020750 57510 Hs.203206 NM_020750 HPRD:06385 XPO5 exp5 exportin 5 protein-coding 13-PTNLD9-TUMOR_peak_3313 chr1 145448937 145449090 + 3.44959 NA intron (NM_001039703, intron 68 of 85) intron (NM_001039703, intron 68 of 85) 10575 NM_006472 10628 Hs.533977 NM_006472 HPRD:05964 TXNIP EST01027|HHCPA78|THIF|VDUP1 thioredoxin interacting protein protein-coding 13-PTNLD9-TUMOR_peak_12393 chr12 27706343 27706437 + 3.44959 NA intron (NM_001198915, intron 1 of 26) intron (NM_001198915, intron 1 of 26) 29345 NM_001198916 8496 Hs.172445 NM_003622 HPRD:04390 PPFIBP1 L2|SGT2|hSGT2|hSgt2p PTPRF interacting protein, binding protein 1 (liprin beta 1) protein-coding 13-PTNLD9-TUMOR_peak_34070 chr3 23907677 23907771 + 3.44815 NA intron (NM_001202476, intron 2 of 4) intron (NM_001202476, intron 2 of 4) -50571 NM_002948 6138 Hs.381219 NM_002948 HPRD:16043 RPL15 DBA12|EC45|L15|RPL10|RPLY10|RPYL10 ribosomal protein L15 protein-coding 13-PTNLD9-TUMOR_peak_15956 chr14 61822637 61822818 + 3.44815 NA intron (NM_006255, intron 1 of 13) intron (NM_006255, intron 1 of 13) 34566 NM_006255 5583 Hs.333907 NM_006255 HPRD:05669 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C, eta protein-coding 13-PTNLD9-TUMOR_peak_21024 chr17 38717162 38717320 + 3.44815 NA intron (NM_001838, intron 1 of 2) intron (NM_001838, intron 1 of 2) 4495 NM_001838 1236 Hs.370036 NM_001838 HPRD:02588 CCR7 BLR2|CD197|CDw197|CMKBR7|EBI1 chemokine (C-C motif) receptor 7 protein-coding 13-PTNLD9-TUMOR_peak_46010 chr6 125518981 125519097 + 3.44815 NA intron (NM_001292026, intron 1 of 4) intron (NM_001292026, intron 1 of 4) 43619 NM_001003395 7164 Hs.591347 NM_003287 HPRD:07236 TPD52L1 D53|hD53 tumor protein D52-like 1 protein-coding 13-PTNLD9-TUMOR_peak_46029 chr6 126278326 126278458 + 3.44815 NA intron (NM_138571, intron 1 of 4) CpG 531 NM_138571 135114 Hs.72325 NM_138571 HPRD:17107 HINT3 HINT4 histidine triad nucleotide binding protein 3 protein-coding 13-PTNLD9-TUMOR_peak_4333 chr1 168317792 168317954 + 3.44815 NA Intergenic LTR12F|LTR|ERV1 -26889 NR_030284 693142 NR_030284 miRBase:MI0003563 MIR557 MIRN557|hsa-mir-557 microRNA 557 ncRNA 13-PTNLD9-TUMOR_peak_27455 chr2 85970838 85971019 + 3.44234 NA Intergenic Intergenic -9981 NM_032827 84913 Hs.135569 NM_032827 ATOH8 HATH6|bHLHa21 atonal homolog 8 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_3510 chr1 149803483 149803596 + 3.43754 NA promoter-TSS (NM_001034077) promoter-TSS (NM_001034077) -682 NM_003548 8370 Hs.55468 NM_003548 HPRD:11821 HIST2H4A FO108|H4|H4/n|H4F2|H4FN|HIST2H4 histone cluster 2, H4a protein-coding 13-PTNLD9-TUMOR_peak_42273 chr5 139017998 139018117 + 3.43503 NA Intergenic Intergenic -10244 NM_016463 51523 Hs.744933 NM_016463 HPRD:13105 CXXC5 CF5|RINF|WID CXXC finger protein 5 protein-coding 13-PTNLD9-TUMOR_peak_8725 chr11 356270 356394 + 3.43503 NA Intergenic CpG -13463 NM_178537 338707 Hs.148074 NM_178537 HPRD:08046 B4GALNT4 - beta-1,4-N-acetyl-galactosaminyl transferase 4 protein-coding 13-PTNLD9-TUMOR_peak_56761 chrX 154687669 154687828 + 3.43465 NA TTS (NR_036049) TTS (NR_036049) 513 NM_001007524 474384 Hs.533543 NM_001007524 F8A3 - coagulation factor VIII-associated 3 protein-coding 13-PTNLD9-TUMOR_peak_47988 chr7 74936470 74936606 + 3.43220 NA promoter-TSS (NR_003664).2 promoter-TSS (NR_003664).2 5 NR_003664 728524 Hs.571275 NM_001023562 ENSG00000198305 SPDYE8P - speedy/RINGO cell cycle regulator family member E8, pseudogene pseudo 13-PTNLD9-TUMOR_peak_8829 chr11 2913300 2913563 + 3.43043 NA intron (NM_007105, intron 3 of 3) intron (NM_007105, intron 3 of 3) -6436 NM_000076 1028 Hs.106070 NM_000076 HPRD:02913 CDKN1C BWCR|BWS|KIP2|WBS|p57|p57Kip2 cyclin-dependent kinase inhibitor 1C (p57, Kip2) protein-coding 13-PTNLD9-TUMOR_peak_33656 chr3 8758225 8758491 + 3.43043 NA Intergenic L1PA3|LINE|L1 -17128 NM_033337 859 Hs.98303 NM_001234 HPRD:03154 CAV3 LGMD1C|LQT9|VIP-21|VIP21 caveolin 3 protein-coding 13-PTNLD9-TUMOR_peak_47879 chr7 73097458 73097552 + 3.43043 NA promoter-TSS (NR_045512) promoter-TSS (NR_045512) 276 NM_032317 84277 Hs.647046 NM_032317 HPRD:10303 DNAJC30 WBSCR18 DnaJ (Hsp40) homolog, subfamily C, member 30 protein-coding 13-PTNLD9-TUMOR_peak_38606 chr4 76555470 76555564 + 3.43043 NA 5' UTR (NM_003948, exon 1 of 12) 5' UTR (NM_003948, exon 1 of 12) 204 NM_003948 8999 Hs.591698 NM_003948 CDKL2 KKIAMRE|P56 cyclin-dependent kinase-like 2 (CDC2-related kinase) protein-coding 13-PTNLD9-TUMOR_peak_35270 chr3 107718266 107718485 + 3.43043 NA Intergenic LTR39|LTR|ERV1 91560 NM_198793 961 Hs.446414 NM_001777 HPRD:03017 CD47 IAP|MER6|OA3 CD47 molecule protein-coding 13-PTNLD9-TUMOR_peak_49722 chr7 152396784 152397087 + 3.43043 NA Intergenic Intergenic -23685 NM_005431 7516 Hs.647093 NM_005431 HPRD:02656 XRCC2 - X-ray repair complementing defective repair in Chinese hamster cells 2 protein-coding 13-PTNLD9-TUMOR_peak_7591 chr10 71078199 71078332 + 3.42968 NA promoter-TSS (NM_000188) promoter-TSS (NM_000188) -338 NM_000188 3098 Hs.370365 NM_000188 HPRD:00809 HK1 HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1 hexokinase 1 protein-coding 13-PTNLD9-TUMOR_peak_25489 chr19 51513457 51513578 + 3.42968 NA promoter-TSS (NM_012315) promoter-TSS (NM_012315) -627 NM_012315 284366 Hs.448942 NM_012315 HPRD:05692 KLK9 KLK-L3|KLKL3 kallikrein-related peptidase 9 protein-coding 13-PTNLD9-TUMOR_peak_44417 chr6 29855673 29856010 + 3.42576 NA non-coding (NR_001434, exon 2 of 8).5 non-coding (NR_001434, exon 2 of 8).5 304 NR_001434 3136 Hs.728808 NR_001434 HLA-H HLAHP major histocompatibility complex, class I, H (pseudogene) pseudo 13-PTNLD9-TUMOR_peak_51602 chr8 110613340 110613518 + 3.42154 NA intron (NM_001099754, intron 3 of 6) MIRb|SINE|MIR 41990 NM_001099756 55638 Hs.390738 NM_017786 HPRD:07902 SYBU GOLSYN|OCSYN|SNPHL syntabulin (syntaxin-interacting) protein-coding 13-PTNLD9-TUMOR_peak_33230 chr22 37986486 37986677 + 3.42154 NA Intergenic L1MB4|LINE|L1 -10557 NM_006498 3957 Hs.531776 NM_006498 HPRD:08859 LGALS2 HL14 lectin, galactoside-binding, soluble, 2 protein-coding 13-PTNLD9-TUMOR_peak_37736 chr4 5053013 5053158 + 3.42154 NA promoter-TSS (NM_018401) promoter-TSS (NM_018401) -442 NM_018401 55351 Hs.133062 NM_018401 HPRD:15446 STK32B HSA250839|STK32|STKG6|YANK2 serine/threonine kinase 32B protein-coding 13-PTNLD9-TUMOR_peak_41598 chr5 98109692 98109853 + 3.42140 NA promoter-TSS (NR_033932) promoter-TSS (NR_033932) -984 NR_033932 503569 Hs.586188 NR_033932 ENSG00000246763 RGMB-AS1 - RGMB antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_3523 chr1 149833351 149833464 + 3.40997 NA promoter-TSS (NM_001034077).2 promoter-TSS (NM_001034077).2 -682 NM_003548 8370 Hs.55468 NM_003548 HPRD:11821 HIST2H4A FO108|H4|H4/n|H4F2|H4FN|HIST2H4 histone cluster 2, H4a protein-coding 13-PTNLD9-TUMOR_peak_21233 chr17 43661952 43662102 + 3.40946 NA Intergenic Intergenic 17721 NR_026901 644172 Hs.448859 NR_026901 LOC644172 - mitogen-activated protein kinase 8 interacting protein 1 pseudogene pseudo 13-PTNLD9-TUMOR_peak_10699 chr11 76572142 76572275 + 3.40946 NA intron (NM_001300953, intron 1 of 9) CpG 291 NM_001300955 55331 Hs.23862 NM_018367 ACER3 APHC|PHCA alkaline ceramidase 3 protein-coding 13-PTNLD9-TUMOR_peak_21178 chr17 42856655 42856895 + 3.40946 NA intron (NM_002390, intron 26 of 26) CpG 20207 NM_002390 4185 Hs.6088 NM_002390 HPRD:01114 ADAM11 MDC ADAM metallopeptidase domain 11 protein-coding 13-PTNLD9-TUMOR_peak_42930 chr5 168436291 168436486 + 3.40946 NA intron (NM_003062, intron 4 of 35) intron (NM_003062, intron 4 of 35) -3844 NR_109897 728095 Hs.145601 NR_109897 ENSG00000248222 CTB-174D11.1 - uncharacterized LOC728095 ncRNA 13-PTNLD9-TUMOR_peak_25039 chr19 41913262 41913453 + 3.40946 NA intron (NM_001164783, intron 1 of 8) L2c|LINE|L2 9663 NM_001164783 593 Hs.433307 NM_000709 HPRD:02009 BCKDHA BCKDE1A|MSU|MSUD1|OVD1A branched chain keto acid dehydrogenase E1, alpha polypeptide protein-coding 13-PTNLD9-TUMOR_peak_42737 chr5 154071220 154071315 + 3.40809 NA Intergenic Intergenic -21195 NM_015315 23367 Hs.292078 NM_015315 HPRD:11225 LARP1 LARP La ribonucleoprotein domain family, member 1 protein-coding 13-PTNLD9-TUMOR_peak_49488 chr7 143105047 143105201 + 3.40772 NA intron (NR_033897, intron 1 of 4) intron (NR_033897, intron 1 of 4) 218 NR_033897 285965 Hs.642649 NR_033897 EPHA1-AS1 - EPHA1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_22154 chr17 76311603 76311768 + 3.39937 NA Intergenic Intergenic -37112 NR_073178 100996291 Hs.744493 NR_073178 ENSG00000204277 LOC100996291 - uncharacterized LOC100996291 ncRNA 13-PTNLD9-TUMOR_peak_31115 chr20 42568505 42568634 + 3.39937 NA intron (NM_001098796, intron 1 of 8) intron (NM_001098796, intron 1 of 8) -5967 NM_001098798 84969 Hs.26608 NM_032883 HPRD:12734 TOX2 C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1 TOX high mobility group box family member 2 protein-coding 13-PTNLD9-TUMOR_peak_23690 chr19 3336929 3337268 + 3.39536 NA Intergenic Intergenic -22463 NM_205843 4782 Hs.170131 NM_005597 ENSG00000141905 NFIC CTF|CTF5|NF-I|NFI nuclear factor I/C (CCAAT-binding transcription factor) protein-coding 13-PTNLD9-TUMOR_peak_32369 chr21 41426416 41426584 + 3.39536 NA intron (NR_073202, intron 29 of 32) intron (NR_073202, intron 29 of 32) 157858 NR_039917 100616148 NR_039917 MIR4760 - microRNA 4760 ncRNA 13-PTNLD9-TUMOR_peak_31758 chr20 60877111 60877254 + 3.39392 NA promoter-TSS (NM_001281438) promoter-TSS (NM_001281438) -770 NM_175573 11047 Hs.90107 NM_007002 HPRD:06440 ADRM1 ARM-1|ARM1|GP110 adhesion regulating molecule 1 protein-coding 13-PTNLD9-TUMOR_peak_3503 chr1 149672141 149672378 + 3.39375 NA intron (NR_111956, intron 2 of 2) CpG 66342 NR_125392 101954268 NR_125392 RNVU1-20 RNU1-110|vU1.20 RNA, variant U1 small nuclear 20 snRNA 13-PTNLD9-TUMOR_peak_18268 chr16 2723001 2723230 + 3.38987 NA intron (NR_040023, intron 1 of 2) CpG 325 NR_040023 100507321 Hs.406976 NM_001012731 ERVK13-1 - endogenous retrovirus group K13, member 1 ncRNA 13-PTNLD9-TUMOR_peak_21659 chr17 57860988 57861097 + 3.37736 NA intron (NM_030938, intron 7 of 11) L2c|LINE|L2 -57585 NR_029493 406991 Hs.444569 NR_029493 miRBase:MI0000077 MIR21 MIRN21|hsa-mir-21|miR-21|miRNA21 microRNA 21 ncRNA 13-PTNLD9-TUMOR_peak_52660 chr9 4302230 4302426 + 3.37736 NA Intergenic Intergenic -2293 NM_001042413 169792 Hs.162125 NM_152629 HPRD:13582 GLIS3 ZNF515 GLIS family zinc finger 3 protein-coding 13-PTNLD9-TUMOR_peak_10998 chr11 96074905 96075080 + 3.37736 NA TTS (NR_036125) TTS (NR_036125) 390 NR_036125 100422991 NR_036125 miRBase:MI0014197 MIR1260B - microRNA 1260b ncRNA 13-PTNLD9-TUMOR_peak_26650 chr2 39347966 39348241 + 3.36954 NA promoter-TSS (NM_005633) promoter-TSS (NM_005633) -499 NM_005633 6654 Hs.709893 NM_005633 HPRD:01681 SOS1 GF1|GGF1|GINGF|HGF|NS4 son of sevenless homolog 1 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_25612 chr19 54355199 54355293 + 3.36954 NA Intergenic L2a|LINE|L2 -13592 NM_001290193 91663 Hs.380906 NM_138373 HPRD:14792 MYADM SB135 myeloid-associated differentiation marker protein-coding 13-PTNLD9-TUMOR_peak_1356 chr1 41847908 41848014 + 3.36954 NA exon (NM_001291281, exon 3 of 3) exon (NM_001291281, exon 3 of 3) 20358 NM_001291281 100132074 Hs.559677 NM_001291281 ENSG00000204060 FOXO6 - forkhead box O6 protein-coding 13-PTNLD9-TUMOR_peak_2355 chr1 87170778 87170872 + 3.36954 NA intron (NM_001206653, intron 1 of 7) CpG 572 NM_001206653 51100 Hs.136309 NM_016009 HPRD:15333 SH3GLB1 Bif-1|PPP1R70|dJ612B15.2 SH3-domain GRB2-like endophilin B1 protein-coding 13-PTNLD9-TUMOR_peak_1803 chr1 53611634 53611806 + 3.36954 NA Intergenic Intergenic -3416 NM_006671 6512 Hs.104637 NM_006671 HPRD:09194 SLC1A7 AAAT|EAAT5 solute carrier family 1 (glutamate transporter), member 7 protein-coding 13-PTNLD9-TUMOR_peak_44937 chr6 39855577 39855712 + 3.36946 NA intron (NM_015345, intron 16 of 24) intron (NM_015345, intron 16 of 24) 39811 NM_005943 4337 Hs.357128 NM_005942 HPRD:04749 MOCS1 MIG11|MOCOD|MOCODA molybdenum cofactor synthesis 1 protein-coding 13-PTNLD9-TUMOR_peak_4737 chr1 184336252 184336378 + 3.36946 NA Intergenic Intergenic -19835 NM_030806 81563 Hs.497159 NM_030806 HPRD:12721 C1orf21 PIG13 chromosome 1 open reading frame 21 protein-coding 13-PTNLD9-TUMOR_peak_552 chr1 17086235 17086393 + 3.36415 NA intron (NM_001271733, intron 6 of 14) CpG-524 4661 NM_001271733 11223 Hs.349110 NM_001271733 MST1L BRF-1|D1F15S1A|MSPL-7|MSPL7|MST1P9|MSTP7|MSTP9 macrophage stimulating 1-like protein-coding 13-PTNLD9-TUMOR_peak_24031 chr19 12076220 12076354 + 3.36332 NA intron (NM_001012753, intron 1 of 3) CpG 418 NM_001012753 284390 Hs.646386 NM_001012753 HPRD:18509 ZNF763 ZNF|ZNF440L zinc finger protein 763 protein-coding 13-PTNLD9-TUMOR_peak_15948 chr14 61614811 61615123 + 3.36332 NA Intergenic Intergenic 133563 NM_001017970 161291 Hs.146180 NM_001017970 HPRD:18567 TMEM30B CDC50B transmembrane protein 30B protein-coding 13-PTNLD9-TUMOR_peak_8772 chr11 1073458 1073552 + 3.36332 NA Intergenic Intergenic -1370 NM_002457 4583 Hs.315 NM_002457 HPRD:11828 MUC2 MLP|MUC-2|SMUC mucin 2, oligomeric mucus/gel-forming protein-coding 13-PTNLD9-TUMOR_peak_9469 chr11 33729398 33729654 + 3.36332 NA 3' UTR (NM_001127223, exon 3 of 3) 3' UTR (NM_001127223, exon 3 of 3) -7240 NM_001166692 100131378 Hs.709466 NM_001166692 C11orf91 - chromosome 11 open reading frame 91 protein-coding 13-PTNLD9-TUMOR_peak_10019 chr11 61559586 61559732 + 3.36178 NA promoter-TSS (NM_004111) promoter-TSS (NM_004111) 374 NR_030342 693196 NR_030342 MIR611 MIRN611|hsa-mir-611 microRNA 611 ncRNA 13-PTNLD9-TUMOR_peak_37023 chr3 185271538 185271636 + 3.36178 NA Intergenic AluY|SINE|Alu -1218 NM_139248 200879 Hs.68864 NM_139248 HPRD:07392 LIPH AH|ARWH2|HYPT7|LAH2|LPDLR|PLA1B|mPA-PLA1 lipase, member H protein-coding 13-PTNLD9-TUMOR_peak_35723 chr3 126076322 126076445 + 3.35007 NA promoter-TSS (NM_014079) promoter-TSS (NM_014079) -147 NM_014079 28999 Hs.272215 NM_014079 HPRD:07568 KLF15 KKLF Kruppel-like factor 15 protein-coding 13-PTNLD9-TUMOR_peak_25701 chr19 56005728 56005969 + 3.34513 NA intron (NM_001195267, intron 7 of 12) intron (NM_001195267, intron 7 of 12) 5978 NM_001195267 284297 Hs.554182 NM_182571 HPRD:11444 SSC5D - scavenger receptor cysteine rich family, 5 domains protein-coding 13-PTNLD9-TUMOR_peak_39340 chr4 129732987 129733148 + 3.34513 NA promoter-TSS (NM_001287443) promoter-TSS (NM_001287443) 68 NM_001287443 79960 Hs.12420 NM_024900 HPRD:10151 JADE1 PHF17 jade family PHD finger 1 protein-coding 13-PTNLD9-TUMOR_peak_30241 chr20 328697 328906 + 3.34361 NA intron (NM_024958, intron 1 of 3) CpG 1431 NM_024958 80023 Hs.416024 NM_024958 HPRD:12791 NRSN2 C20orf98|dJ1103G7.6 neurensin 2 protein-coding 13-PTNLD9-TUMOR_peak_5542 chr1 224019546 224019687 + 3.34361 NA intron (NM_001031685, intron 1 of 17) intron (NM_001031685, intron 1 of 17) 14058 NM_001031685 7159 Hs.523968 NM_005426 HPRD:11803 TP53BP2 53BP2|ASPP2|BBP|P53BP2|PPP1R13A tumor protein p53 binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_47989 chr7 74964539 74964633 + 3.33111 NA promoter-TSS (NR_003664) promoter-TSS (NR_003664) 26 NR_003664 728524 Hs.571275 NM_001023562 ENSG00000198305 SPDYE8P - speedy/RINGO cell cycle regulator family member E8, pseudogene pseudo 13-PTNLD9-TUMOR_peak_8831 chr11 2932806 2932982 + 3.33057 NA intron (NM_002555, intron 5 of 10) intron (NM_002555, intron 5 of 10) -7719 NM_007105 5003 Hs.300076 NM_007105 SLC22A18AS BWR1B|BWSCR1B|ORCTL2S|SLC22A1LS|p27-BWR1B solute carrier family 22 (organic cation transporter), member 18 antisense protein-coding 13-PTNLD9-TUMOR_peak_45608 chr6 83073298 83073392 + 3.33057 NA promoter-TSS (NM_001166392) promoter-TSS (NM_001166392) 422 NM_006670 7162 Hs.82128 NM_006670 HPRD:01837 TPBG 5T4|5T4AG|M6P1|WAIF1 trophoblast glycoprotein protein-coding 13-PTNLD9-TUMOR_peak_34770 chr3 58220489 58220583 + 3.33057 NA Intergenic Intergenic -2723 NM_020676 57406 Hs.476454 NM_020676 HPRD:12407 ABHD6 - abhydrolase domain containing 6 protein-coding 13-PTNLD9-TUMOR_peak_31625 chr20 54934475 54934616 + 3.33057 NA intron (NM_080821, intron 1 of 2) intron (NM_080821, intron 1 of 2) 562 NM_080821 116151 Hs.143736 NM_080821 HPRD:12737 FAM210B 5A3|C20orf108|dJ1167H4.1 family with sequence similarity 210, member B protein-coding 13-PTNLD9-TUMOR_peak_24305 chr19 17326367 17326474 + 3.32900 NA intron (NM_018467, intron 1 of 7) CpG 265 NM_018467 55850 Hs.16187 NM_018467 HPRD:11299 USE1 P31|SLT1 unconventional SNARE in the ER 1 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_2446 chr1 91487311 91487405 + 3.32900 NA promoter-TSS (NM_016620) promoter-TSS (NM_016620) -293 NM_016620 84146 Hs.173001 NM_016620 HPRD:15885 ZNF644 BM-005|MYP21|NatF|ZEP-2 zinc finger protein 644 protein-coding 13-PTNLD9-TUMOR_peak_14952 chr13 95201706 95201800 + 3.31822 NA Intergenic CpG 46758 NM_014305 23483 Hs.12393 NM_014305 HPRD:15494 TGDS SDR2E1|TDPGD TDP-glucose 4,6-dehydratase protein-coding 13-PTNLD9-TUMOR_peak_33135 chr22 32026524 32026720 + 3.31822 NA intron (NM_014338, intron 1 of 8) CpG 188 NM_014338 23761 Hs.420559 NM_014338 HPRD:17854 PISD DJ858B16|PSD|PSDC|PSSC|dJ858B16.2 phosphatidylserine decarboxylase protein-coding 13-PTNLD9-TUMOR_peak_12570 chr12 40499456 40499550 + 3.31822 NA exon (NM_052885, exon 1 of 10) exon (NM_052885, exon 1 of 10) 158 NM_052885 114134 Hs.558595 NM_052885 HPRD:15363 SLC2A13 HMIT solute carrier family 2 (facilitated glucose transporter), member 13 protein-coding 13-PTNLD9-TUMOR_peak_14521 chr13 30712070 30712252 + 3.31821 NA Intergenic Intergenic 169030 NM_001014380 84056 Hs.243596 NM_032116 HPRD:13753 KATNAL1 - katanin p60 subunit A-like 1 protein-coding 13-PTNLD9-TUMOR_peak_49285 chr7 137602173 137602346 + 3.31161 NA intron (NM_194071, intron 2 of 11) intron (NM_194071, intron 2 of 11) -35835 NM_001243523 100130880 Hs.712161 NM_001243523 LOC100130880 - uncharacterized LOC100130880 protein-coding 13-PTNLD9-TUMOR_peak_14492 chr13 29290769 29290931 + 3.31159 NA intron (NM_181785, intron 2 of 5) intron (NM_181785, intron 2 of 5) 2300 NM_001135919 283537 Hs.117167 NM_181785 HPRD:14146 SLC46A3 FKSG16 solute carrier family 46, member 3 protein-coding 13-PTNLD9-TUMOR_peak_43506 chr6 3069795 3069992 + 3.29987 NA Intergenic Intergenic -7165 NM_003804 8737 Hs.519842 NM_003804 HPRD:04583 RIPK1 RIP|RIP1 receptor (TNFRSF)-interacting serine-threonine kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_28516 chr2 133318936 133319039 + 3.29745 NA intron (NM_001508, intron 1 of 1) intron (NM_001508, intron 1 of 1) 109494 NM_144586 116372 Hs.432395 NM_144586 HPRD:14333 LYPD1 LYPDC1|PHTS LY6/PLAUR domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_29177 chr2 177053728 177053822 + 3.29633 NA promoter-TSS (NR_033979) promoter-TSS (NR_033979) -89 NR_033979 401022 Hs.98661 NR_033979 HAGLR HOXD-AS1|Mdgt HOXD antisense growth-associated long non-coding RNA ncRNA 13-PTNLD9-TUMOR_peak_49953 chr8 2186247 2186341 + 3.29633 NA Intergenic CpG 161625 NR_106983 102465695 NR_106983 MIR7160 hsa-mir-7160 microRNA 7160 ncRNA 13-PTNLD9-TUMOR_peak_2969 chr1 116017064 116017164 + 3.29633 NA Intergenic Intergenic -136257 NM_002506 4803 Hs.2561 NM_002506 HPRD:08874 NGF Beta-NGF|HSAN5|NGFB nerve growth factor (beta polypeptide) protein-coding 13-PTNLD9-TUMOR_peak_54736 chr9 126130416 126130599 + 3.29384 NA promoter-TSS (NR_104603) promoter-TSS (NR_104603) -551 NR_104603 286204 Hs.568340 NM_173689 HPRD:13093 CRB2 - crumbs family member 2 protein-coding 13-PTNLD9-TUMOR_peak_25839 chr19 59117819 59117959 + 3.29380 NA Intergenic TAR1|Satellite|telo 31123 NR_026052 65996 Hs.541177 NM_023939 HPRD:14527 CENPBD1P1 - CENPBD1 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_1210 chr1 38513091 38513185 + 3.29237 NA promoter-TSS (NM_002699) promoter-TSS (NM_002699) -688 NM_002699 5453 Hs.1837 NM_002699 HPRD:03921 POU3F1 OCT6|OTF6|SCIP POU class 3 homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_19020 chr16 30670267 30670426 + 3.28615 NA Intergenic CpG -5432 NM_001105079 64319 Hs.247186 NM_022452 HPRD:16354 FBRS FBS|FBS1 fibrosin protein-coding 13-PTNLD9-TUMOR_peak_3765 chr1 153959311 153959430 + 3.28605 NA promoter-TSS (NR_073553) promoter-TSS (NR_073553) -517 NM_002870 5872 Hs.151536 NM_002870 HPRD:04053 RAB13 - RAB13, member RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_49416 chr7 141675969 141676063 + 3.28219 NA Intergenic Intergenic -2443 NM_176817 5726 Hs.647085 NM_176817 HPRD:09672 TAS2R38 PTC|T2R38|T2R61 taste receptor, type 2, member 38 protein-coding 13-PTNLD9-TUMOR_peak_49498 chr7 143260643 143260751 + 3.27649 NA Intergenic Intergenic -8197 NM_001008747 441294 Hs.450233 NM_001008747 HPRD:17404 CTAGE15 CTAGE15P|cTAGE-15 CTAGE family, member 15 protein-coding 13-PTNLD9-TUMOR_peak_41259 chr5 73111515 73111643 + 3.27461 NA intron (NM_001244364, intron 1 of 27) intron (NM_001244364, intron 1 of 27) 2236 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor (GEF) 28 protein-coding 13-PTNLD9-TUMOR_peak_1676 chr1 47854560 47854718 + 3.27461 NA Intergenic Intergenic -27105 NM_012186 2301 Hs.112968 NM_012186 HPRD:03058 FOXE3 FKHL12|FREAC8 forkhead box E3 protein-coding 13-PTNLD9-TUMOR_peak_29061 chr2 172017290 172017480 + 3.27461 NA promoter-TSS (NM_012290) promoter-TSS (NM_012290) 25 NM_012290 9874 Hs.744917 NM_012290 ENSG00000198586 TLK1 PKU-beta tousled-like kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_4688 chr1 183066622 183066878 + 3.27261 NA intron (NM_002293, intron 1 of 27) intron (NM_002293, intron 1 of 27) 74155 NM_002293 3915 Hs.609663 NM_002293 HPRD:01030 LAMC1 LAMB2 laminin, gamma 1 (formerly LAMB2) protein-coding 13-PTNLD9-TUMOR_peak_5978 chr1 235866945 235867097 + 3.27261 NA intron (NM_001301365, intron 44 of 52) intron (NM_001301365, intron 44 of 52) -52967 NM_001098721 2786 Hs.159711 NM_004485 HPRD:11978 GNG4 - guanine nucleotide binding protein (G protein), gamma 4 protein-coding 13-PTNLD9-TUMOR_peak_5267 chr1 206548083 206548384 + 3.27261 NA intron (NM_001170637, intron 1 of 19) intron (NM_001170637, intron 1 of 19) -9134 NR_120535 100996712 Hs.497575 NM_001271887 SRGAP2D - SLIT-ROBO Rho GTPase activating protein 2D (pseudogene) pseudo 13-PTNLD9-TUMOR_peak_53541 chr9 71005794 71005915 + 3.26772 NA intron (NM_021965, intron 4 of 10) intron (NM_021965, intron 4 of 10) -33072 NR_015423 572558 Hs.552819 NR_015423 ENSG00000224958 PGM5-AS1 FAM233A PGM5 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_39641 chr4 152462656 152462815 + 3.26772 NA intron (NM_001109977, intron 3 of 13) intron (NM_001109977, intron 3 of 13) 132337 NM_001109977 729830 Hs.633810 NM_001109977 ENSG00000164142 FAM160A1 - family with sequence similarity 160, member A1 protein-coding 13-PTNLD9-TUMOR_peak_496 chr1 15753385 15753612 + 3.26772 NA intron (NM_024329, intron 2 of 3) intron (NM_024329, intron 2 of 3) -11440 NM_007272 11330 Hs.631869 NM_007272 HPRD:03242 CTRC CLCR|ELA4 chymotrypsin C (caldecrin) protein-coding 13-PTNLD9-TUMOR_peak_1176 chr1 37942854 37943035 + 3.25736 NA intron (NM_025079, intron 2 of 5) intron (NM_025079, intron 2 of 5) 2825 NM_025079 80149 Hs.656294 NM_025079 HPRD:08021 ZC3H12A MCPIP|MCPIP1|dJ423B22.1 zinc finger CCCH-type containing 12A protein-coding 13-PTNLD9-TUMOR_peak_19953 chr16 84871675 84871801 + 3.25690 NA intron (NM_031476, intron 1 of 14) intron (NM_031476, intron 1 of 14) 18151 NM_031476 83716 Hs.513779 NM_031476 HPRD:13186 CRISPLD2 CRISP11|LCRISP2 cysteine-rich secretory protein LCCL domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_5798 chr1 230908592 230908713 + 3.25324 NA intron (NM_016452, intron 7 of 18) intron (NM_016452, intron 7 of 18) 25491 NM_016452 10753 Hs.498021 NM_006615 HPRD:05909 CAPN9 GC36|nCL-4 calpain 9 protein-coding 13-PTNLD9-TUMOR_peak_53783 chr9 85372626 85372729 + 3.25319 NA Intergenic L1PA3|LINE|L1 305366 NM_152573 158158 Hs.129136 NM_152573 HPRD:08337 RASEF RAB45 RAS and EF-hand domain containing protein-coding 13-PTNLD9-TUMOR_peak_17488 chr15 67336725 67336872 + 3.25319 NA Intergenic Intergenic -21397 NM_005902 4088 Hs.727986 NM_005902 HPRD:04380 SMAD3 HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3 SMAD family member 3 protein-coding 13-PTNLD9-TUMOR_peak_36882 chr3 179754531 179754633 + 3.24254 NA 5' UTR (NM_001256753, exon 1 of 13) 5' UTR (NM_001256753, exon 1 of 13) 259 NM_001256752 51555 Hs.235331 NM_016559 HPRD:11425 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5-like protein-coding 13-PTNLD9-TUMOR_peak_31734 chr20 58094554 58094648 + 3.24254 NA Intergenic Intergenic -57963 NM_001199505 116154 Hs.473218 NM_080672 HPRD:10571 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 13-PTNLD9-TUMOR_peak_30958 chr20 35965087 35965212 + 3.24254 NA Intergenic Intergenic -7939 NM_005417 6714 Hs.195659 NM_005417 HPRD:01819 SRC ASV|SRC1|c-SRC|p60-Src SRC proto-oncogene, non-receptor tyrosine kinase protein-coding 13-PTNLD9-TUMOR_peak_37035 chr3 185555266 185555360 + 3.24254 NA Intergenic L1MC4a|LINE|L1 -12486 NM_001291869 10644 Hs.35354 NM_006548 HPRD:10507 IGF2BP2 IMP-2|IMP2|VICKZ2 insulin-like growth factor 2 mRNA binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_22004 chr17 73600167 73600329 + 3.24254 NA intron (NR_003587, intron 17 of 60) intron (NR_003587, intron 17 of 60) 16109 NR_003587 80022 Hs.390817 NM_001080847 ENSG00000266714 MYO15B MYO15BP myosin XVB pseudogene pseudo 13-PTNLD9-TUMOR_peak_4216 chr1 164442890 164442997 + 3.24254 NA Intergenic Intergenic -85654 NM_001204963 5087 Hs.557097 NM_002585 HPRD:08889 PBX1 - pre-B-cell leukemia homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_34538 chr3 49415134 49415263 + 3.23440 NA intron (NM_001664, intron 1 of 4) AluJb|SINE|Alu -19407 NM_000581 2876 Hs.76686 NM_000581 HPRD:11749 GPX1 GPXD|GSHPX1 glutathione peroxidase 1 protein-coding 13-PTNLD9-TUMOR_peak_5814 chr1 231298204 231298401 + 3.23168 NA promoter-TSS (NM_001004342) promoter-TSS (NM_001004342) -372 NM_001300889 440730 Hs.655089 NM_001004342 HPRD:15570 TRIM67 TNL tripartite motif containing 67 protein-coding 13-PTNLD9-TUMOR_peak_54822 chr9 130672968 130673216 + 3.23168 NA intron (NM_175039, intron 4 of 5) intron (NM_175039, intron 4 of 5) -5465 NM_001287002 30815 Hs.109672 NM_013443 HPRD:18111 ST6GALNAC6 SIAT7-F|SIAT7F|ST6GALNACVI ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 protein-coding 13-PTNLD9-TUMOR_peak_40131 chr5 191705 191816 + 3.22538 NA exon (NM_001080478, exon 1 of 2) exon (NM_001080478, exon 1 of 2) 134 NM_001080478 389257 Hs.683662 NM_001080478 LRRC14B - leucine rich repeat containing 14B protein-coding 13-PTNLD9-TUMOR_peak_1447 chr1 43672964 43673133 + 3.21968 NA intron (NM_152498, intron 10 of 10) Tigger3a|DNA|TcMar-Tigger -34807 NM_001159936 10969 Hs.346868 NM_006824 HPRD:16849 EBNA1BP2 EBP2|NOBP|P40 EBNA1 binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_26411 chr2 27931586 27931813 + 3.21968 NA Intergenic L2a|LINE|L2 -44992 NM_001282731 9913 Hs.6232 NM_014860 HPRD:18115 SUPT7L SPT7L|STAF65|STAF65(gamma)|STAF65G|SUPT7H suppressor of Ty 7 (S. cerevisiae)-like protein-coding 13-PTNLD9-TUMOR_peak_2055 chr1 64239815 64239944 + 3.21769 NA 5' UTR (NM_005012, exon 1 of 9) 5' UTR (NM_005012, exon 1 of 9) 189 NM_001083592 4919 Hs.128753 NM_005012 HPRD:03821 ROR1 NTRKR1|dJ537F10.1 receptor tyrosine kinase-like orphan receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_19977 chr16 85404489 85404620 + 3.21570 NA Intergenic Intergenic -64623 NR_049816 100847022 NR_049816 miRBase:MI0017982 MIR5093 - microRNA 5093 ncRNA 13-PTNLD9-TUMOR_peak_46410 chr6 158424675 158424779 + 3.21034 NA intron (NM_003898, intron 1 of 26) intron (NM_003898, intron 1 of 26) 2588 NR_046796 100874300 Hs.742238 NR_046796 SYNJ2-IT1 - SYNJ2 intronic transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_8912 chr11 6280440 6280575 + 3.21034 NA promoter-TSS (NM_176875) promoter-TSS (NM_176875) -397 NM_176875 887 Hs.203 NM_176875 HPRD:00323 CCKBR CCK-B|CCK2R|GASR cholecystokinin B receptor protein-coding 13-PTNLD9-TUMOR_peak_25500 chr19 51574512 51574606 + 3.21034 NA Intergenic LTR3B|LTR|ERVK -6192 NM_015596 26085 Hs.165296 NM_015596 KLK13 KLK-L4|KLKL4 kallikrein-related peptidase 13 protein-coding 13-PTNLD9-TUMOR_peak_1695 chr1 48204418 48204512 + 3.21034 NA Intergenic Intergenic 258097 NM_001194986 388630 Hs.61504 NM_001194986 ENSG00000269113 TRABD2B TIKI2 TraB domain containing 2B protein-coding 13-PTNLD9-TUMOR_peak_31018 chr20 37752831 37752925 + 3.21034 NA Intergenic Intergenic 100513 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LOC339568 - uncharacterized LOC339568 ncRNA 13-PTNLD9-TUMOR_peak_30087 chr2 236287081 236287193 + 3.21034 NA Intergenic L1MC4|LINE|L1 -115596 NM_001037131 116987 Hs.435039 NM_014914 HPRD:16359 AGAP1 AGAP-1|CENTG2|GGAP1|cnt-g2 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 protein-coding 13-PTNLD9-TUMOR_peak_17313 chr15 53364310 53364502 + 3.21034 NA Intergenic Intergenic -282197 NM_004498 3175 Hs.658573 NM_004498 ONECUT1 HNF-6|HNF6|HNF6A one cut homeobox 1 protein-coding 13-PTNLD9-TUMOR_peak_15472 chr14 32465916 32466010 + 3.21034 NA Intergenic L2a|LINE|L2 79942 NR_027263 84837 Hs.496755 NM_032751 ENSG00000258655 ARHGAP5-AS1 C14orf128 ARHGAP5 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_16933 chr15 31373977 31374071 + 3.21034 NA intron (NM_001252024, intron 1 of 27) intron (NM_001252024, intron 1 of 27) -16680 NR_029624 406993 NR_029624 MIR211 MIRN211|mir-211 microRNA 211 ncRNA 13-PTNLD9-TUMOR_peak_17894 chr15 85874515 85874656 + 3.21034 NA Intergenic Intergenic -49262 NM_007200 11214 Hs.459211 NM_006738 HPRD:05253 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A kinase (PRKA) anchor protein 13 protein-coding 13-PTNLD9-TUMOR_peak_30342 chr20 4116325 4116419 + 3.21034 NA Intergenic Intergenic -13054 NM_175840 54498 Hs.433337 NM_175839 HPRD:11587 SMOX C20orf16|PAO|PAO-1|PAO1|PAOH|PAOH1|SMO spermine oxidase protein-coding 13-PTNLD9-TUMOR_peak_51409 chr8 101661805 101661899 + 3.21034 NA promoter-TSS (NM_152628) promoter-TSS (NM_152628) 41 NM_152628 169166 Hs.567758 NM_152628 HPRD:17545 SNX31 - sorting nexin 31 protein-coding 13-PTNLD9-TUMOR_peak_31540 chr20 51812518 51812673 + 3.21034 NA intron (NM_001193421, intron 1 of 2) intron (NM_001193421, intron 1 of 2) 10773 NM_001193421 128553 Hs.473117 NM_173485 HPRD:10730 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 13-PTNLD9-TUMOR_peak_29578 chr2 203453480 203453574 + 3.21034 NA Intergenic L1PA17|LINE|L1 -46374 NM_173511 150864 Hs.471130 NM_173511 HPRD:12445 FAM117B ALS2CR13 family with sequence similarity 117, member B protein-coding 13-PTNLD9-TUMOR_peak_42682 chr5 150813178 150813340 + 3.21034 NA Intergenic Intergenic -13904 NM_078483 206358 Hs.269004 NM_078483 HPRD:07584 SLC36A1 Dct1|LYAAT1|PAT1|TRAMD3 solute carrier family 36 (proton/amino acid symporter), member 1 protein-coding 13-PTNLD9-TUMOR_peak_39304 chr4 128544288 128544451 + 3.21034 NA Intergenic CpG -9718 NM_015693 27152 Hs.391481 NM_015693 INTU INT|PDZD6|PDZK6 inturned planar cell polarity protein protein-coding 13-PTNLD9-TUMOR_peak_6317 chr10 3710615 3710721 + 3.21034 NA Intergenic Intergenic 116805 NM_001300 1316 Hs.4055 NM_001300 HPRD:03632 KLF6 BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9 Kruppel-like factor 6 protein-coding 13-PTNLD9-TUMOR_peak_8306 chr10 110118679 110118817 + 3.21034 NA Intergenic Intergenic -289697 NR_125760 103695365 Hs.648991 NR_125760 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 13-PTNLD9-TUMOR_peak_4519 chr1 177842532 177842626 + 3.21034 NA Intergenic Intergenic 96471 NM_033127 89866 Hs.149540 NM_033127 HPRD:11491 SEC16B LZTR2|PGPR-p117|RGPR|SEC16S SEC16 homolog B (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_18002 chr15 92554873 92555056 + 3.21034 NA intron (NM_013272, intron 2 of 9) L2a|LINE|L2 158026 NM_013272 28232 Hs.311187 NM_013272 HPRD:07502 SLCO3A1 OATP-D|OATP3A1|OATPD|SLC21A11 solute carrier organic anion transporter family, member 3A1 protein-coding 13-PTNLD9-TUMOR_peak_56400 chrX 118006421 118006527 + 3.21034 NA intron (NR_110393, intron 6 of 6) intron (NR_110393, intron 6 of 6) 32955 NR_110393 101928287 Hs.496647 NR_110393 ENSG00000203650 LINC01285 - long intergenic non-protein coding RNA 1285 ncRNA 13-PTNLD9-TUMOR_peak_52957 chr9 27408170 27408264 + 3.21034 NA intron (NM_024761, intron 2 of 3) intron (NM_024761, intron 2 of 3) -111080 NM_001161585 54586 Hs.163070 NM_020641 HPRD:12932 EQTN AFAF|C9orf11|SPACA8|equatorin equatorin, sperm acrosome associated protein-coding 13-PTNLD9-TUMOR_peak_41380 chr5 78023752 78023846 + 3.21034 NA Intergenic Intergenic -79151 NM_005779 10184 Hs.79299 NM_005779 HPRD:17272 LHFPL2 - lipoma HMGIC fusion partner-like 2 protein-coding 13-PTNLD9-TUMOR_peak_8624 chr10 131127806 131127900 + 3.21034 NA Intergenic Intergenic -137601 NM_002412 4255 Hs.501522 NM_002412 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 13-PTNLD9-TUMOR_peak_11793 chr12 1326442 1326536 + 3.21034 NA intron (NR_027949, intron 8 of 15) intron (NR_027949, intron 8 of 15) 189575 NM_001301248 23085 Hs.601216 NM_178039 HPRD:06181 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 13-PTNLD9-TUMOR_peak_34139 chr3 27674501 27674709 + 3.21034 NA Intergenic CpG 89601 NM_001278182 8320 Hs.591663 NM_005442 HPRD:07054 EOMES TBR2 eomesodermin protein-coding 13-PTNLD9-TUMOR_peak_618 chr1 21476382 21476619 + 3.21034 NA intron (NM_001198803, intron 3 of 14) intron (NM_001198803, intron 3 of 14) 24751 NM_001198803 8672 Hs.467084 NM_003760 HPRD:06802 EIF4G3 eIF-4G 3|eIF4G 3|eIF4GII eukaryotic translation initiation factor 4 gamma, 3 protein-coding 13-PTNLD9-TUMOR_peak_26298 chr2 23641447 23641608 + 3.21034 NA intron (NM_052920, intron 1 of 13) intron (NM_052920, intron 1 of 13) 33229 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch-like family member 29 protein-coding 13-PTNLD9-TUMOR_peak_46365 chr6 155258973 155259093 + 3.21034 NA Intergenic Intergenic -152390 NM_012454 26230 Hs.586279 NM_012454 HPRD:05273 TIAM2 STEF|TIAM-2 T-cell lymphoma invasion and metastasis 2 protein-coding 13-PTNLD9-TUMOR_peak_5395 chr1 218458482 218458624 + 3.21034 NA promoter-TSS (NM_016052) promoter-TSS (NM_016052) -76 NM_016052 51018 Hs.660109 NM_016052 HPRD:10822 RRP15 KIAA0507 ribosomal RNA processing 15 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_7373 chr10 52257507 52257668 + 3.21034 NA intron (NM_147156, intron 3 of 10) intron (NM_147156, intron 3 of 10) 126150 NM_147156 259230 Hs.654698 NM_147156 HPRD:18203 SGMS1 MOB|MOB1|SMS1|TMEM23|hmob33 sphingomyelin synthase 1 protein-coding 13-PTNLD9-TUMOR_peak_12242 chr12 15369082 15369222 + 3.21034 NA intron (NM_032918, intron 2 of 4) intron (NM_032918, intron 2 of 4) 5259 NM_032918 85004 Hs.199487 NM_032918 HPRD:15238 RERG - RAS-like, estrogen-regulated, growth inhibitor protein-coding 13-PTNLD9-TUMOR_peak_32858 chr22 21983405 21983521 + 3.21034 NA exon (NM_001017964, exon 4 of 5) exon (NM_001017964, exon 4 of 5) 877 NM_001017964 150223 Hs.355952 NM_001017964 HPRD:18559 YDJC - YdjC homolog (bacterial) protein-coding 13-PTNLD9-TUMOR_peak_35060 chr3 83475550 83475703 + 3.21034 NA Intergenic MER34-int|LTR|ERV1 1443100 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 13-PTNLD9-TUMOR_peak_27166 chr2 69135629 69135723 + 3.21034 NA Intergenic Intergenic -37027 NM_014482 27302 Hs.158317 NM_014482 HPRD:09788 BMP10 - bone morphogenetic protein 10 protein-coding 13-PTNLD9-TUMOR_peak_40709 chr5 41794698 41794792 + 3.21034 NA intron (NM_000436, intron 12 of 16) intron (NM_000436, intron 12 of 16) -75387 NR_046635 100874002 Hs.375537 NR_046635 OXCT1-AS1 - OXCT1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_13814 chr12 110493570 110493674 + 3.21034 NA intron (NM_207435, intron 4 of 4) LTR8|LTR|ERV1 11878 NM_207435 400073 Hs.44817 NM_207435 HPRD:13443 C12orf76 - chromosome 12 open reading frame 76 protein-coding 13-PTNLD9-TUMOR_peak_10463 chr11 69706341 69706536 + 3.21034 NA Intergenic Intergenic -72246 NM_005247 2248 Hs.37092 NM_005247 FGF3 HBGF-3|INT2 fibroblast growth factor 3 protein-coding 13-PTNLD9-TUMOR_peak_32734 chr22 19484934 19485085 + 3.21034 NA intron (NM_001178011, intron 7 of 17) intron (NM_001178011, intron 7 of 17) 17660 NM_001178011 8318 Hs.474217 NM_003504 HPRD:09145 CDC45 CDC45L|CDC45L2|PORC-PI-1 cell division cycle 45 protein-coding 13-PTNLD9-TUMOR_peak_44931 chr6 39659862 39659956 + 3.21034 NA intron (NM_001289020, intron 3 of 21) AluSc|SINE|Alu 33272 NM_001289021 221458 Hs.588202 NM_145027 HPRD:10786 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 13-PTNLD9-TUMOR_peak_24881 chr19 38781457 38781551 + 3.21034 NA intron (NM_021102, intron 6 of 6) intron (NM_021102, intron 6 of 6) -13300 NM_033520 64073 Hs.631544 NM_022125 HPRD:12706 C19orf33 H2RSP|IMUP|IMUP-1|IMUP-2 chromosome 19 open reading frame 33 protein-coding 13-PTNLD9-TUMOR_peak_50231 chr8 21000402 21000496 + 3.21034 NA Intergenic Intergenic -155301 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 13-PTNLD9-TUMOR_peak_35289 chr3 108636539 108636633 + 3.21034 NA intron (NM_005459, intron 2 of 3) intron (NM_005459, intron 2 of 3) 36091 NM_005459 9626 Hs.233363 NM_005459 HPRD:05499 GUCA1C GCAP3 guanylate cyclase activator 1C protein-coding 13-PTNLD9-TUMOR_peak_30457 chr20 13800948 13801042 + 3.21034 NA Intergenic Intergenic 35323 NR_029377 79133 Hs.472165 NM_024120 HPRD:12780 NDUFAF5 C20orf7|bA526K24.2|dJ842G6.1 NADH dehydrogenase (ubiquinone) complex I, assembly factor 5 protein-coding 13-PTNLD9-TUMOR_peak_39175 chr4 119810049 119810171 + 3.21034 NA 5' UTR (NM_001286755, exon 1 of 3) 5' UTR (NM_001286755, exon 1 of 3) 114 NM_001128933 171024 Hs.655519 NM_133477 HPRD:15456 SYNPO2 - synaptopodin 2 protein-coding 13-PTNLD9-TUMOR_peak_54430 chr9 113353962 113354109 + 3.21034 NA Intergenic L1MD2|LINE|L1 -11875 NM_153366 79987 Hs.522334 NM_153366 ENSG00000165124 SVEP1 C9orf13|CCP22|POLYDOM|SEL-OB|SELOB sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_16335 chr14 77653356 77653499 + 3.21034 NA intron (NM_020431, intron 1 of 23) MIRc|SINE|MIR 5325 NM_020431 57156 Hs.22452 NM_020431 HPRD:16617 TMEM63C C14orf171|CSC1|hsCSC1 transmembrane protein 63C protein-coding 13-PTNLD9-TUMOR_peak_12656 chr12 47302473 47302567 + 3.21034 NA Intergenic L1MA3|LINE|L1 -82740 NM_018018 55089 Hs.446077 NM_018018 HPRD:12159 SLC38A4 ATA3|NAT3|PAAT solute carrier family 38, member 4 protein-coding 13-PTNLD9-TUMOR_peak_22237 chr17 78593794 78593888 + 3.21034 NA intron (NM_020761, intron 1 of 33) MIR3|SINE|MIR 75216 NM_001163034 57521 Hs.133044 NM_020761 HPRD:06184 RPTOR KOG1|Mip1 regulatory associated protein of MTOR, complex 1 protein-coding 13-PTNLD9-TUMOR_peak_53212 chr9 38171391 38171504 + 3.21034 NA Intergenic LTR10A|LTR|ERV1 -102237 NM_003028 6461 Hs.521482 NM_003028 SHB bA3J10.2 Src homology 2 domain containing adaptor protein B protein-coding 13-PTNLD9-TUMOR_peak_50573 chr8 33100841 33101004 + 3.21034 NA Intergenic Intergenic 229742 NM_032664 84750 Hs.458713 NM_032664 ENSG00000172728 FUT10 - fucosyltransferase 10 (alpha (1,3) fucosyltransferase) protein-coding 13-PTNLD9-TUMOR_peak_22844 chr18 25742237 25742367 + 3.21034 NA intron (NM_001792, intron 1 of 15) intron (NM_001792, intron 1 of 15) 15143 NM_001792 1000 Hs.464829 NM_001792 HPRD:00226 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2, type 1, N-cadherin (neuronal) protein-coding 13-PTNLD9-TUMOR_peak_52152 chr8 134088629 134088802 + 3.21034 NA intron (NM_001045556, intron 1 of 8) intron (NM_001045556, intron 1 of 8) -16112 NM_006748 6503 Hs.75367 NM_006748 HPRD:03060 SLA SLA1|SLAP Src-like-adaptor protein-coding 13-PTNLD9-TUMOR_peak_17187 chr15 44632697 44632853 + 3.21034 NA intron (NM_177974, intron 6 of 8) MER5A|DNA|hAT-Charlie 51866 NM_138423 113201 Hs.512867 NM_138423 HPRD:11018 CASC4 H63 cancer susceptibility candidate 4 protein-coding 13-PTNLD9-TUMOR_peak_30094 chr2 237148964 237149187 + 3.21034 NA intron (NM_212556, intron 2 of 5) intron (NM_212556, intron 2 of 5) 23913 NM_212556 401036 Hs.639909 NM_212556 HPRD:16514 ASB18 ASB-18 ankyrin repeat and SOCS box containing 18 protein-coding 13-PTNLD9-TUMOR_peak_7901 chr10 85835936 85836030 + 3.21034 NA Intergenic Intergenic -63202 NM_014394 27069 Hs.352656 NM_014394 HPRD:17038 GHITM DERP2|HSPC282|MICS1|PTD010|TMBIM5 growth hormone inducible transmembrane protein protein-coding 13-PTNLD9-TUMOR_peak_41050 chr5 63793396 63793490 + 3.21034 NA Intergenic L2c|LINE|L2 -8331 NM_001029875 401190 Hs.657133 NM_001029875 ENSG00000186479 RGS7BP R7BP regulator of G-protein signaling 7 binding protein protein-coding 13-PTNLD9-TUMOR_peak_9018 chr11 9809709 9809805 + 3.21034 NA intron (NM_030962, intron 35 of 39) intron (NM_030962, intron 35 of 39) -28677 NR_033972 440028 Hs.677541 NR_033972 ENSG00000245522 LOC440028 - uncharacterized LOC440028 ncRNA 13-PTNLD9-TUMOR_peak_30075 chr2 235411318 235411412 + 3.21034 NA Intergenic Intergenic -5668 NM_001282431 10123 Hs.111554 NM_005737 HPRD:11988 ARL4C ARL7|LAK ADP-ribosylation factor-like 4C protein-coding 13-PTNLD9-TUMOR_peak_9972 chr11 60727061 60727155 + 3.21034 NA Intergenic MER20|DNA|hAT-Charlie -7851 NR_027391 51296 Hs.237856 NM_016582 HPRD:11565 SLC15A3 OCTP|PHT2|PTR3 solute carrier family 15 (oligopeptide transporter), member 3 protein-coding 13-PTNLD9-TUMOR_peak_37053 chr3 186170472 186170612 + 3.21034 NA Intergenic Intergenic 40908 NR_033844 253573 Hs.97386 NR_033844 ENSG00000224406 LOC253573 - uncharacterized LOC253573 ncRNA 13-PTNLD9-TUMOR_peak_16211 chr14 71715064 71715158 + 3.21034 NA Intergenic Intergenic -149943 NR_001276 319139 NR_001276 ENSG00000207444 SNORD56B RNU56B small nucleolar RNA, C/D box 56B snoRNA 13-PTNLD9-TUMOR_peak_49957 chr8 2338137 2338231 + 3.21034 NA Intergenic CpG 142269 NR_125423 101927815 Hs.571467 NR_125423 ENSG00000249694 LOC101927815 - uncharacterized LOC101927815 ncRNA 13-PTNLD9-TUMOR_peak_9190 chr11 16176322 16176416 + 3.21034 NA intron (NM_033326, intron 6 of 15) intron (NM_033326, intron 6 of 15) -185202 NR_106721 102464826 NR_106721 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 13-PTNLD9-TUMOR_peak_2497 chr1 94059518 94059612 + 3.21034 NA intron (NR_034091, intron 1 of 3) intron (NR_034091, intron 1 of 3) 2040 NR_034091 100129046 Hs.729244 NR_034091 LOC100129046 - uncharacterized LOC100129046 ncRNA 13-PTNLD9-TUMOR_peak_54360 chr9 110546801 110546942 + 3.21034 NA Intergenic Intergenic -294824 NM_004235 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel-like factor 4 (gut) protein-coding 13-PTNLD9-TUMOR_peak_17755 chr15 79461450 79461601 + 3.21034 NA Intergenic Intergenic -40605 NR_029705 406960 NR_029705 miRBase:MI0000481 MIR184 EDICT|MIRN184|miR-184 microRNA 184 ncRNA 13-PTNLD9-TUMOR_peak_34394 chr3 44941152 44941298 + 3.21034 NA intron (NM_003241, intron 6 of 13) MLT1F2|LTR|ERVL-MaLR 25127 NM_003241 7047 Hs.438265 NM_003241 HPRD:08997 TGM4 TGP|hTGP transglutaminase 4 protein-coding 13-PTNLD9-TUMOR_peak_8507 chr10 124053645 124053739 + 3.21034 NA intron (NM_144587, intron 7 of 15) intron (NM_144587, intron 7 of 15) 22871 NM_144587 118663 Hs.422466 NM_144587 HPRD:12594 BTBD16 C10orf87 BTB (POZ) domain containing 16 protein-coding 13-PTNLD9-TUMOR_peak_42578 chr5 148838128 148838285 + 3.21034 NA Intergenic Intergenic 27997 NR_029686 406937 NR_029686 miRBase:MI0000461 MIR145 MIRN145|miR-145|miRNA145 microRNA 145 ncRNA 13-PTNLD9-TUMOR_peak_12916 chr12 54332346 54332492 + 3.21034 NA promoter-TSS (NM_017410) promoter-TSS (NM_017410) -157 NM_017410 3229 Hs.118608 NM_017410 HPRD:00862 HOXC13 ECTD9|HOX3|HOX3G homeobox C13 protein-coding 13-PTNLD9-TUMOR_peak_15632 chr14 44673395 44673530 + 3.21034 NA Intergenic MLT1J|LTR|ERVL-MaLR 303037 NM_032135 84075 Hs.307086 NM_032135 HPRD:12638 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 13-PTNLD9-TUMOR_peak_14239 chr12 125249517 125249720 + 3.21034 NA Intergenic Intergenic 98901 NM_005505 949 Hs.731377 NM_005505 HPRD:03024 SCARB1 CD36L1|CLA-1|CLA1|HDLQTL6|SR-BI|SRB1 scavenger receptor class B, member 1 protein-coding 13-PTNLD9-TUMOR_peak_11367 chr11 118134912 118135089 + 3.21034 NA 5' UTR (NM_005797, exon 1 of 6) 5' UTR (NM_005797, exon 1 of 6) 251 NM_005797 10205 Hs.116651 NM_005797 HPRD:05340 MPZL2 EVA|EVA1 myelin protein zero-like 2 protein-coding 13-PTNLD9-TUMOR_peak_47810 chr7 70040502 70040596 + 3.21034 NA intron (NM_001127231, intron 5 of 17) intron (NM_001127231, intron 5 of 17) -556974 NM_022479 64409 Hs.488591 NM_022479 HPRD:15655 WBSCR17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T5L Williams-Beuren syndrome chromosome region 17 protein-coding 13-PTNLD9-TUMOR_peak_54469 chr9 115387163 115387257 + 3.21034 NA intron (NM_001287036, intron 3 of 4) intron (NM_001287036, intron 3 of 4) 93177 NM_021218 58493 Hs.658575 NM_021218 INIP C9orf80|HSPC043|MISE|SOSSC|SSBIP1|hSSBIP1 INTS3 and NABP interacting protein protein-coding 13-PTNLD9-TUMOR_peak_12626 chr12 45684078 45684213 + 3.21034 NA intron (NM_001204803, intron 2 of 20) intron (NM_001204803, intron 2 of 20) -2321 NM_001142678 196527 Hs.505339 NM_001025356 HPRD:18746 ANO6 BDPLT7|SCTS|TMEM16F anoctamin 6 protein-coding 13-PTNLD9-TUMOR_peak_20529 chr17 15862621 15862782 + 3.21034 NA intron (NM_000676, intron 1 of 1) L1MC4|LINE|L1 14470 NM_000676 136 Hs.167046 NM_000676 HPRD:15971 ADORA2B ADORA2 adenosine A2b receptor protein-coding 13-PTNLD9-TUMOR_peak_9177 chr11 15221485 15221579 + 3.21034 NA intron (NM_001278316, intron 5 of 10) intron (NM_001278316, intron 5 of 10) 50884 NM_001278313 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - inscuteable homolog (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_16040 chr14 65312739 65312833 + 3.21034 NA Intergenic Intergenic -22920 NM_001024858 6710 Hs.417303 NM_000347 HPRD:01686 SPTB EL3|HS2|HSPTB1|SPH2 spectrin, beta, erythrocytic protein-coding 13-PTNLD9-TUMOR_peak_5466 chr1 221997544 221997638 + 3.21034 NA Intergenic Intergenic -82073 NM_007207 11221 Hs.497822 NM_007207 HPRD:12320 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 13-PTNLD9-TUMOR_peak_42949 chr5 169562854 169562951 + 3.21034 NA Intergenic Intergenic 29985 NM_144769 2299 Hs.87236 NM_012188 HPRD:03057 FOXI1 FKH10|FKHL10|FREAC-6|FREAC6|HFH-3|HFH3 forkhead box I1 protein-coding 13-PTNLD9-TUMOR_peak_25252 chr19 48076352 48076515 + 3.21034 NA Intergenic GC_rich|Low_complexity|Low_complexity -17320 NM_001277075 84215 Hs.14161 NM_032255 HPRD:10337 ZNF541 - zinc finger protein 541 protein-coding 13-PTNLD9-TUMOR_peak_32827 chr22 21457205 21457348 + 3.21034 NA promoter-TSS (NR_037566) promoter-TSS (NR_037566) -29 NR_037566 400892 Hs.745077 NM_207474 BCRP2 BCR-2|BCR2|BCRL2 breakpoint cluster region pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_34930 chr3 70775687 70775817 + 3.21034 NA Intergenic Intergenic 338322 NM_001244813 27086 Hs.59368 NM_032682 HPRD:18518 FOXP1 12CC4|QRF1|hFKH1B forkhead box P1 protein-coding 13-PTNLD9-TUMOR_peak_17654 chr15 74735613 74735707 + 3.21034 NA Intergenic L2c|LINE|L2 -9361 NM_001146029 8482 Hs.24640 NM_003612 HPRD:07081 SEMA7A CD108|CDw108|H-SEMA-K1|H-Sema-L|JMH|SEMAK1|SEMAL semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group) protein-coding 13-PTNLD9-TUMOR_peak_12188 chr12 13054087 13054182 + 3.21034 NA intron (NM_003979, intron 1 of 3) intron (NM_003979, intron 1 of 3) 10178 NM_003979 9052 Hs.631733 NM_003979 GPRC5A GPCR5A|RAI3|RAIG1 G protein-coupled receptor, class C, group 5, member A protein-coding 13-PTNLD9-TUMOR_peak_29895 chr2 222683378 222683517 + 3.21034 NA Intergenic Intergenic -246437 NM_004438 2043 Hs.371218 NM_004438 HPRD:03719 EPHA4 HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 13-PTNLD9-TUMOR_peak_1827 chr1 54178899 54179039 + 3.21034 NA intron (NM_147193, intron 1 of 9) AluJb|SINE|Alu 20908 NM_147193 148979 Hs.306691 NM_147193 HPRD:13581 GLIS1 - GLIS family zinc finger 1 protein-coding 13-PTNLD9-TUMOR_peak_29073 chr2 172419853 172419989 + 3.21034 NA Intergenic Intergenic 41055 NM_001127383 79901 Hs.221941 NM_024843 HPRD:05764 CYBRD1 CYB561A2|DCYTB|FRRS3 cytochrome b reductase 1 protein-coding 13-PTNLD9-TUMOR_peak_16266 chr14 75122467 75122618 + 3.21034 NA Intergenic Intergenic -43508 NM_000428 4053 Hs.512776 NM_000428 HPRD:03650 LTBP2 C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3 latent transforming growth factor beta binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_45257 chr6 49499862 49499956 + 3.21034 NA Intergenic Intergenic -18204 NM_001145652 135398 Hs.722010 NM_153344 HPRD:12852 C6orf141 - chromosome 6 open reading frame 141 protein-coding 13-PTNLD9-TUMOR_peak_40572 chr5 34053389 34053483 + 3.21034 NA intron (NR_037951, intron 1 of 8) intron (NR_037951, intron 1 of 8) -10065 NM_030945 114899 Hs.171929 NM_030945 C1QTNF3 C1ATNF3|CORCS|CORS|CORS-26|CORS26|CTRP3 C1q and tumor necrosis factor related protein 3 protein-coding 13-PTNLD9-TUMOR_peak_21539 chr17 53654438 53654612 + 3.21034 NA Intergenic Intergenic 145700 NM_018286 55273 Hs.173233 NM_018286 HPRD:07719 TMEM100 - transmembrane protein 100 protein-coding 13-PTNLD9-TUMOR_peak_9655 chr11 45294391 45294485 + 3.21034 NA intron (NM_001247987, intron 1 of 7) intron (NM_001247987, intron 1 of 7) 13446 NM_020826 57586 Hs.436643 NM_020826 HPRD:12128 SYT13 - synaptotagmin XIII protein-coding 13-PTNLD9-TUMOR_peak_30556 chr20 19740535 19740629 + 3.21034 NA Intergenic Intergenic -126583 NM_001242581 54453 Hs.472270 NM_018993 HPRD:15249 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 13-PTNLD9-TUMOR_peak_47424 chr7 47130925 47131019 + 3.21034 NA Intergenic Intergenic 490770 NM_022748 64759 Hs.520814 NM_022748 ENSG00000136205 TNS3 TEM6|TENS1 tensin 3 protein-coding 13-PTNLD9-TUMOR_peak_6480 chr10 11958131 11958317 + 3.21034 NA Intergenic MIR|SINE|MIR -21515 NR_038222 219731 Hs.576787 NR_038222 ENSG00000225778 PROSER2-AS1 - PROSER2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_17587 chr15 71530098 71530201 + 3.21034 NA intron (NM_024817, intron 3 of 16) intron (NM_024817, intron 3 of 16) -48751 NR_120350 101929196 Hs.680472 NR_120348 LOC101929196 - uncharacterized LOC101929196 ncRNA 13-PTNLD9-TUMOR_peak_39482 chr4 142102701 142102822 + 3.21034 NA Intergenic Intergenic -39280 NM_001292002 27309 Hs.120766 NM_014487 HPRD:15775 ZNF330 HSA6591|NOA36 zinc finger protein 330 protein-coding 13-PTNLD9-TUMOR_peak_9068 chr11 11746741 11746908 + 3.21034 NA Intergenic Intergenic 57945 NR_107037 102465870 NR_107037 MIR8070 hsa-mir-8070 microRNA 8070 ncRNA 13-PTNLD9-TUMOR_peak_15805 chr14 54572731 54572825 + 3.21034 NA Intergenic MER5A|DNA|hAT-Charlie -149224 NM_001202 652 Hs.68879 NM_001202 HPRD:00207 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 13-PTNLD9-TUMOR_peak_9477 chr11 33920981 33921109 + 3.21034 NA Intergenic MIRb|SINE|MIR -7209 NM_005574 4005 Hs.34560 NM_005574 HPRD:01586 LMO2 RBTN2|RBTNL1|RHOM2|TTG2 LIM domain only 2 (rhombotin-like 1) protein-coding 13-PTNLD9-TUMOR_peak_50511 chr8 29705791 29705945 + 3.21034 NA Intergenic Intergenic -73161 NR_024473 286135 Hs.376840 NR_024473 ENSG00000253279 FAM183CP - family with sequence similarity 183, member C, pseudogene ncRNA 13-PTNLD9-TUMOR_peak_13523 chr12 96190821 96190987 + 3.21034 NA Intergenic Intergenic -6368 NM_021229 59277 Hs.201034 NM_021229 HPRD:10121 NTN4 PRO3091 netrin 4 protein-coding 13-PTNLD9-TUMOR_peak_52137 chr8 133528600 133528694 + 3.21034 NA Intergenic Intergenic -35643 NM_004519 3786 Hs.374023 NM_004519 HPRD:09077 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel, KQT-like subfamily, member 3 protein-coding 13-PTNLD9-TUMOR_peak_50912 chr8 50824157 50824304 + 3.21034 NA promoter-TSS (NM_018967) promoter-TSS (NM_018967) -109 NM_001287814 54212 Hs.584914 NM_018967 HPRD:16373 SNTG1 G1SYN|SYN4 syntrophin, gamma 1 protein-coding 13-PTNLD9-TUMOR_peak_17241 chr15 47758722 47758901 + 3.21034 NA intron (NM_001198999, intron 2 of 19) L1MA9|LINE|L1 -251875 NM_153617 80031 Hs.511265 NM_020858 HPRD:10221 SEMA6D - sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D protein-coding 13-PTNLD9-TUMOR_peak_225 chr1 7020488 7020657 + 3.21034 NA intron (NM_015215, intron 3 of 22) L2c|LINE|L2 175188 NR_038934 23261 Hs.397705 NM_015215 HPRD:16681 CAMTA1 CANPMR calmodulin binding transcription activator 1 protein-coding 13-PTNLD9-TUMOR_peak_12480 chr12 32908795 32908889 + 3.21034 NA promoter-TSS (NM_001040436) promoter-TSS (NM_001040436) 45 NM_001040436 51067 Hs.505231 NM_015936 HPRD:13025 YARS2 MLASA2|MT-TYRRS|TYRRS tyrosyl-tRNA synthetase 2, mitochondrial protein-coding 13-PTNLD9-TUMOR_peak_52705 chr9 6614705 6614799 + 3.21034 NA intron (NM_000170, intron 3 of 24) Tigger3a|DNA|TcMar-Tigger 30940 NM_000170 2731 Hs.584238 NM_000170 HPRD:01996 GLDC GCE|GCSP|HYGN1 glycine dehydrogenase (decarboxylating) protein-coding 13-PTNLD9-TUMOR_peak_50371 chr8 24206874 24206968 + 3.21034 NA intron (NM_014265, intron 18 of 22) intron (NM_014265, intron 18 of 22) -34877 NM_001145272 27299 Hs.521459 NM_014479 HPRD:07070 ADAMDEC1 M12.219 ADAM-like, decysin 1 protein-coding 13-PTNLD9-TUMOR_peak_46543 chr6 168161948 168162129 + 3.21034 NA Intergenic Intergenic 35501 NR_026773 26238 Hs.520583 NM_014356 HPRD:12846 C6orf123 HGC6.2|dJ431P23.4 chromosome 6 open reading frame 123 ncRNA 13-PTNLD9-TUMOR_peak_20309 chr17 4503366 4503565 + 3.21034 NA intron (NM_001114974, intron 7 of 7) intron (NM_001114974, intron 7 of 7) 15631 NM_001114974 342527 Hs.441709 NM_198501 HPRD:13463 SMTNL2 - smoothelin-like 2 protein-coding 13-PTNLD9-TUMOR_peak_27688 chr2 95958735 95958853 + 3.21034 NA Intergenic Intergenic -4278 NM_013434 30818 Hs.437376 NM_013434 HPRD:05232 KCNIP3 CSEN|DREAM|KCHIP3 Kv channel interacting protein 3, calsenilin protein-coding 13-PTNLD9-TUMOR_peak_29935 chr2 226928505 226928655 + 3.21034 NA Intergenic L3b|LINE|CR1 -78930 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 13-PTNLD9-TUMOR_peak_8287 chr10 106175411 106175533 + 3.21034 NA intron (NM_001008723, intron 15 of 17) intron (NM_001008723, intron 15 of 17) 61950 NM_001008723 159686 Hs.253576 NM_001008723 HPRD:16583 CFAP58 C10orf80|CCDC147|bA127L20.4|bA127L20.5|bA554P13.1 cilia and flagella associated protein 58 protein-coding 13-PTNLD9-TUMOR_peak_39184 chr4 120034555 120034732 + 3.21034 NA Intergenic Intergenic -22296 NM_016599 51778 Hs.732122 NM_016599 HPRD:05724 MYOZ2 C4orf5|CMH16|CS-1 myozenin 2 protein-coding 13-PTNLD9-TUMOR_peak_37868 chr4 8111910 8112023 + 3.21034 NA intron (NM_001130085, intron 1 of 17) intron (NM_001130085, intron 1 of 17) -38223 NM_001286688 84448 Hs.233404 NM_032432 ENSG00000163995 ABLIM2 - actin binding LIM protein family, member 2 protein-coding 13-PTNLD9-TUMOR_peak_11075 chr11 103496186 103496280 + 3.21034 NA Intergenic LTR26B|LTR|ERV1 -224401 NR_039842 100616457 NR_039842 miRBase:MI0017326 MIR4693 - microRNA 4693 ncRNA 13-PTNLD9-TUMOR_peak_42761 chr5 155300072 155300166 + 3.21034 NA Intergenic Intergenic -453648 NM_172244 6444 Hs.387207 NM_000337 HPRD:03246 SGCD 35DAG|CMD1L|DAGD|SG-delta|SGCDP|SGD sarcoglycan, delta (35kDa dystrophin-associated glycoprotein) protein-coding 13-PTNLD9-TUMOR_peak_45315 chr6 52878900 52879017 + 3.21034 NA intron (NM_014920, intron 8 of 13) intron (NM_014920, intron 8 of 13) -18780 NM_001512 2941 Hs.485557 NM_001512 HPRD:06899 GSTA4 GSTA4-4|GTA4 glutathione S-transferase alpha 4 protein-coding 13-PTNLD9-TUMOR_peak_30953 chr20 35830728 35830924 + 3.21034 NA intron (NM_002951, intron 4 of 16) intron (NM_002951, intron 4 of 16) -22835 NM_213631 140699 Hs.349125 NM_152503 HPRD:12745 MROH8 C20orf131|C20orf132|dJ621N11.3|dJ621N11.4 maestro heat-like repeat family member 8 protein-coding 13-PTNLD9-TUMOR_peak_46289 chr6 150577919 150578013 + 3.21034 NA Intergenic Intergenic -112062 NM_203395 389434 Hs.310225 NM_203395 HPRD:16668 IYD C6orf71|DEHAL1|TDH4|dJ422F24.1 iodotyrosine deiodinase protein-coding 13-PTNLD9-TUMOR_peak_8839 chr11 3094268 3094548 + 3.21034 NA Intergenic Intergenic -15727 NM_139273 833 Hs.274873 NM_001751 HPRD:00464 CARS CARS1|CYSRS|MGC:11246 cysteinyl-tRNA synthetase protein-coding 13-PTNLD9-TUMOR_peak_5306 chr1 207208401 207208546 + 3.21034 NA Intergenic Intergenic -2372 NM_001083924 79098 Hs.32417 NM_023938 HPRD:15294 C1orf116 SARG chromosome 1 open reading frame 116 protein-coding 13-PTNLD9-TUMOR_peak_40286 chr5 10059965 10060061 + 3.21034 NA Intergenic Intergenic -156077 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LOC285692 - uncharacterized LOC285692 ncRNA 13-PTNLD9-TUMOR_peak_11682 chr11 130744357 130744545 + 3.21034 NA Intergenic MLT1L|LTR|ERVL-MaLR -4309 NR_125382 103611081 Hs.430300 NR_125382 LOC103611081 - uncharacterized LOC103611081 ncRNA 13-PTNLD9-TUMOR_peak_39913 chr4 179119927 179120070 + 3.21034 NA Intergenic MLT1F2|LTR|ERVL-MaLR -290908 NR_108092 101928656 Hs.508131 NR_108092 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 13-PTNLD9-TUMOR_peak_30902 chr20 34686281 34686409 + 3.21034 NA intron (NM_001258329, intron 1 of 22) MLT1C|LTR|ERVL-MaLR 5713 NM_177996 2036 Hs.437422 NM_012156 HPRD:04193 EPB41L1 4.1N|MRD11 erythrocyte membrane protein band 4.1-like 1 protein-coding 13-PTNLD9-TUMOR_peak_14885 chr13 77297890 77298042 + 3.21034 NA Intergenic L3|LINE|CR1 162574 NM_138444 115207 Hs.644125 NM_138444 HPRD:11060 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 13-PTNLD9-TUMOR_peak_11878 chr12 4593112 4593226 + 3.21034 NA Intergenic Intergenic -38389 NM_020996 2251 Hs.166015 NM_020996 HPRD:00623 FGF6 HBGF-6|HST2 fibroblast growth factor 6 protein-coding 13-PTNLD9-TUMOR_peak_32777 chr22 20273344 20273470 + 3.21034 NA Intergenic Intergenic -17591 NM_023004 65078 Hs.30868 NM_023004 HPRD:16123 RTN4R NGR|NOGOR reticulon 4 receptor protein-coding 13-PTNLD9-TUMOR_peak_39682 chr4 154138671 154138837 + 3.21034 NA intron (NM_015271, intron 1 of 11) MamRep137|DNA|TcMar? 13156 NM_015271 23321 Hs.435711 NM_015271 HPRD:10279 TRIM2 CMT2R|RNF86 tripartite motif containing 2 protein-coding 13-PTNLD9-TUMOR_peak_8407 chr10 118481633 118481810 + 3.21034 NA intron (NM_025015, intron 1 of 11) intron (NM_025015, intron 1 of 11) 20364 NM_025015 259217 Hs.648448 NM_025015 ENSG00000165868 HSPA12A - heat shock 70kDa protein 12A protein-coding 13-PTNLD9-TUMOR_peak_26569 chr2 36638879 36639014 + 3.21034 NA intron (NM_016441, intron 2 of 16) intron (NM_016441, intron 2 of 16) 55576 NM_016441 51232 Hs.699247 NM_016441 HPRD:08392 CRIM1 CRIM-1|S52 cysteine rich transmembrane BMP regulator 1 (chordin-like) protein-coding 13-PTNLD9-TUMOR_peak_54774 chr9 128246993 128247154 + 3.21034 NA intron (NM_024117, intron 7 of 10) intron (NM_024117, intron 7 of 10) 185904 NM_001282681 26130 Hs.495134 NM_015635 HPRD:10886 GAPVD1 GAPEX5|GAPex-5|RAP6 GTPase activating protein and VPS9 domains 1 protein-coding 13-PTNLD9-TUMOR_peak_711 chr1 24636418 24636541 + 3.21034 NA Intergenic Intergenic -9333 NM_198173 57822 Hs.657920 NM_021180 HPRD:12210 GRHL3 SOM|TFCP2L4|VWS2 grainyhead-like 3 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_46152 chr6 139695596 139695775 + 3.21034 NA promoter-TSS (NM_001168389) promoter-TSS (NM_001168389) 102 NM_006079 10370 Hs.82071 NM_006079 HPRD:04245 CITED2 ASD8|MRG-1|MRG1|P35SRJ|VSD2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 protein-coding 13-PTNLD9-TUMOR_peak_11153 chr11 109191469 109191563 + 3.21034 NA Intergenic LTR16A1|LTR|ERVL -101330 NM_207645 399947 Hs.172982 NM_207645 HPRD:14218 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 13-PTNLD9-TUMOR_peak_33480 chr22 47486873 47486980 + 3.21034 NA intron (NR_104292, intron 12 of 13) intron (NR_104292, intron 12 of 13) -174988 NR_122047 642757 Hs.632786 NR_122047 TBC1D22A-AS1 - TBC1D22A antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_15143 chr13 113585728 113585986 + 3.21034 NA Intergenic L1MC3|LINE|L1 37095 NR_034002 100289410 Hs.667436 NR_034002 MCF2L-AS1 - MCF2L antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_5776 chr1 229802443 229802566 + 3.21034 NA Intergenic Intergenic 40523 NM_014777 9816 Hs.533628 NM_014777 HPRD:17178 URB2 KIAA0133|NET10|NPA2 URB2 ribosome biogenesis 2 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_18499 chr16 10956383 10956562 + 3.21034 NA Intergenic MIR3|SINE|MIR -14583 NM_000246 4261 Hs.701991 NM_000246 HPRD:02475 CIITA C2TA|CIITAIV|MHC2TA|NLRA class II, major histocompatibility complex, transactivator protein-coding 13-PTNLD9-TUMOR_peak_28051 chr2 111918451 111918553 + 3.21034 NA intron (NM_138622, intron 4 of 4) MLT1B|LTR|ERVL-MaLR 40011 NM_001204111 10018 Hs.469658 NM_006538 HPRD:04828 BCL2L11 BAM|BIM|BOD BCL2-like 11 (apoptosis facilitator) protein-coding 13-PTNLD9-TUMOR_peak_29776 chr2 216765011 216765204 + 3.21034 NA Intergenic Intergenic -56848 NR_037195 646324 Hs.655713 NR_037195 ENSG00000235770 LINC00607 - long intergenic non-protein coding RNA 607 ncRNA 13-PTNLD9-TUMOR_peak_44343 chr6 27970001 27970112 + 3.21034 NA Intergenic HERVL18-int|LTR|ERVL 45037 NM_012367 26212 Hs.532145 NM_012367 HPRD:17696 OR2B6 OR2B1|OR2B1P|OR2B5|OR2B6P|OR5-40|OR5-41|OR6-31|dJ408B20.2 olfactory receptor, family 2, subfamily B, member 6 protein-coding 13-PTNLD9-TUMOR_peak_44934 chr6 39760181 39760275 + 3.21034 NA promoter-TSS (NM_001201427) promoter-TSS (NM_001201427) 69 NM_001201427 23500 Hs.357128 NM_015345 HPRD:09434 DAAM2 dJ90A20A.1 dishevelled associated activator of morphogenesis 2 protein-coding 13-PTNLD9-TUMOR_peak_35740 chr3 126569682 126569846 + 3.21034 NA intron (NM_032343, intron 4 of 7) intron (NM_032343, intron 4 of 7) -137673 NM_032242 5361 Hs.432329 NM_032242 HPRD:11868 PLXNA1 NOV|NOVP|PLEXIN-A1|PLXN1 plexin A1 protein-coding 13-PTNLD9-TUMOR_peak_29938 chr2 227276632 227276755 + 3.21034 NA Intergenic Intergenic 246816 NR_049887 100847053 NR_049887 miRBase:MI0019309 MIR5702 - microRNA 5702 ncRNA 13-PTNLD9-TUMOR_peak_30011 chr2 232485842 232485968 + 3.21034 NA Intergenic Intergenic 28330 NM_152614 165100 Hs.98104 NM_152614 HPRD:14602 C2orf57 - chromosome 2 open reading frame 57 protein-coding 13-PTNLD9-TUMOR_peak_17404 chr15 62917007 62917195 + 3.21034 NA Intergenic Intergenic 20279 NR_026897 197003 Hs.352253 NM_152648 ENSG00000259458 MGC15885 - uncharacterized protein MGC15885 ncRNA 13-PTNLD9-TUMOR_peak_475 chr1 14382064 14382213 + 3.21034 NA Intergenic Intergenic 306262 NM_001007257 7799 Hs.371823 NM_012231 HPRD:03120 PRDM2 HUMHOXY1|KMT8|MTB-ZF|RIZ|RIZ1|RIZ2 PR domain containing 2, with ZNF domain protein-coding 13-PTNLD9-TUMOR_peak_41396 chr5 79080549 79080727 + 3.21034 NA intron (NM_153610, intron 9 of 12) L1HS|LINE|L1 94979 NM_153610 202333 Hs.482625 NM_153610 HPRD:16728 CMYA5 C5orf10|SPRYD2|TRIM76 cardiomyopathy associated 5 protein-coding 13-PTNLD9-TUMOR_peak_46466 chr6 161528966 161529073 + 3.21034 NA intron (NM_006724, intron 20 of 25) intron (NM_006724, intron 20 of 25) 53995 NR_024277 79992 Hs.664873 NM_024929 AGPAT4-IT1 C6orf59|NCRNA00241 AGPAT4 intronic transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_19314 chr16 50616257 50616384 + 3.21034 NA intron (NM_033119, intron 3 of 9) intron (NM_033119, intron 3 of 9) 34079 NM_033119 85407 Hs.187578 NM_033119 NKD1 Naked1 naked cuticle homolog 1 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_38193 chr4 38622718 38622902 + 3.21034 NA intron (NR_026804, intron 6 of 7) intron (NR_026804, intron 6 of 7) -42980 NM_016531 51274 Hs.298658 NM_016531 HPRD:13920 KLF3 BKLF Kruppel-like factor 3 (basic) protein-coding 13-PTNLD9-TUMOR_peak_30458 chr20 13820188 13820349 + 3.21034 NA Intergenic MLT1D|LTR|ERVL-MaLR 54596 NR_029377 79133 Hs.472165 NM_024120 HPRD:12780 NDUFAF5 C20orf7|bA526K24.2|dJ842G6.1 NADH dehydrogenase (ubiquinone) complex I, assembly factor 5 protein-coding 13-PTNLD9-TUMOR_peak_18287 chr16 2977118 2977226 + 3.21034 NA intron (NM_020912, intron 2 of 8) HERVK-int|LTR|ERVK 15192 NM_020912 84256 Hs.655321 NM_020912 HPRD:13222 FLYWCH1 - FLYWCH-type zinc finger 1 protein-coding 13-PTNLD9-TUMOR_peak_9069 chr11 11753385 11753479 + 3.21034 NA Intergenic Intergenic 51337 NR_107037 102465870 NR_107037 MIR8070 hsa-mir-8070 microRNA 8070 ncRNA 13-PTNLD9-TUMOR_peak_29866 chr2 220144454 220144592 + 3.21034 NA 5' UTR (NM_001039550, exon 2 of 10) 5' UTR (NM_001039550, exon 2 of 10) 483 NM_006736 3300 Hs.77768 NM_006736 HPRD:07249 DNAJB2 DSMA5|HSJ-1|HSJ1|HSPF3 DnaJ (Hsp40) homolog, subfamily B, member 2 protein-coding 13-PTNLD9-TUMOR_peak_16464 chr14 93075789 93075883 + 3.21034 NA intron (NM_024832, intron 3 of 9) intron (NM_024832, intron 3 of 9) 95711 NM_024832 79890 Hs.326822 NM_024832 HPRD:11494 RIN3 - Ras and Rab interactor 3 protein-coding 13-PTNLD9-TUMOR_peak_13531 chr12 96429110 96429249 + 3.20696 NA exon (NM_000895, exon 1 of 19) exon (NM_000895, exon 1 of 19) 260 NM_000895 4048 Hs.524648 NM_000895 HPRD:01056 LTA4H - leukotriene A4 hydrolase protein-coding 13-PTNLD9-TUMOR_peak_36097 chr3 138187832 138187926 + 3.19793 NA intron (NM_031913, intron 14 of 22) MIRb|SINE|MIR 34464 NM_031913 83850 Hs.477711 NM_031913 HPRD:13054 ESYT3 CHR3SYT|E-Syt3|FAM62C extended synaptotagmin-like protein 3 protein-coding 13-PTNLD9-TUMOR_peak_33556 chr3 3152010 3152197 + 3.19793 NA promoter-TSS (NM_175724) promoter-TSS (NM_175724) -45 NM_000564 3568 Hs.68876 NM_000564 HPRD:00998 IL5RA CD125|CDw125|HSIL5R3|IL5R interleukin 5 receptor, alpha protein-coding 13-PTNLD9-TUMOR_peak_43127 chr5 174715163 174715296 + 3.19793 NA Intergenic Intergenic 155934 NM_000794 1812 Hs.2624 NM_000794 HPRD:00538 DRD1 DADR|DRD1A dopamine receptor D1 protein-coding 13-PTNLD9-TUMOR_peak_47817 chr7 70709198 70709309 + 3.19724 NA intron (NM_022479, intron 1 of 10) intron (NM_022479, intron 1 of 10) -63407 NR_037479 100500920 NR_037479 MIR3914-2 - microRNA 3914-2 ncRNA 13-PTNLD9-TUMOR_peak_28759 chr2 153354330 153354460 + 3.19724 NA intron (NM_052905, intron 1 of 25) MLT1E|LTR|ERVL-MaLR 162644 NM_052905 114793 Hs.654630 NM_052905 HPRD:13545 FMNL2 FHOD2 formin-like 2 protein-coding 13-PTNLD9-TUMOR_peak_26048 chr2 9455783 9455887 + 3.19724 NA intron (NM_003887, intron 3 of 27) intron (NM_003887, intron 3 of 27) 107808 NM_004763 9270 Hs.467662 NM_004763 HPRD:06194 ITGB1BP1 ICAP-1A|ICAP-1B|ICAP-1alpha|ICAP1|ICAP1A|ICAP1B integrin beta 1 binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_31071 chr20 39739647 39739779 + 3.19724 NA intron (NM_003286, intron 13 of 20) intron (NM_003286, intron 13 of 20) -26448 NM_182811 5335 Hs.268177 NM_002660 HPRD:01398 PLCG1 NCKAP3|PLC-II|PLC1|PLC148|PLCgamma1 phospholipase C, gamma 1 protein-coding 13-PTNLD9-TUMOR_peak_32897 chr22 22863117 22863253 + 3.19724 NA 5' UTR (NM_080764, exon 1 of 4) 5' UTR (NM_080764, exon 1 of 4) 320 NM_080764 140883 Hs.43834 NM_080764 HPRD:11615 ZNF280B 5'OY11.1|D87009.C22.3|SUHW2|ZNF279|ZNF632 zinc finger protein 280B protein-coding 13-PTNLD9-TUMOR_peak_40965 chr5 57497838 57498011 + 3.19724 NA Intergenic Intergenic -79756 NR_104669 101928569 Hs.319708 NR_104669 ENSG00000248132 LOC101928569 - uncharacterized LOC101928569 ncRNA 13-PTNLD9-TUMOR_peak_9227 chr11 18067797 18067910 + 3.19724 NA Intergenic CpG -5518 NM_004179 7166 Hs.591999 NM_004179 TPH1 TPRH|TRPH tryptophan hydroxylase 1 protein-coding 13-PTNLD9-TUMOR_peak_2997 chr1 116854631 116854770 + 3.19724 NA Intergenic Intergenic -61095 NM_000701 476 Hs.371889 NM_000701 HPRD:01662 ATP1A1 - ATPase, Na+/K+ transporting, alpha 1 polypeptide protein-coding 13-PTNLD9-TUMOR_peak_15819 chr14 55031902 55031996 + 3.18929 NA Intergenic CpG -2381 NM_001161576 23034 Hs.98259 NM_015589 HPRD:10209 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 13-PTNLD9-TUMOR_peak_19622 chr16 68270033 68270189 + 3.18900 NA promoter-TSS (NM_024939) promoter-TSS (NM_024939) 25 NM_024939 80004 Hs.436585 NM_024939 HPRD:07971 ESRP2 RBM35B epithelial splicing regulatory protein 2 protein-coding 13-PTNLD9-TUMOR_peak_40133 chr5 218931 219025 + 3.18900 NA promoter-TSS (NM_145265) promoter-TSS (NM_145265) 640 NM_001294332 6389 Hs.440475 NM_004168 HPRD:02914 SDHA CMD1GG|FP|PGL5|SDH1|SDH2|SDHF succinate dehydrogenase complex, subunit A, flavoprotein (Fp) protein-coding 13-PTNLD9-TUMOR_peak_31710 chr20 57267776 57267870 + 3.17640 NA promoter-TSS (NM_024663) promoter-TSS (NM_024663) -39 NM_024663 79716 Hs.654868 NM_024663 HPRD:07496 NPEPL1 bA261P9.2 aminopeptidase-like 1 protein-coding 13-PTNLD9-TUMOR_peak_48678 chr7 102835879 102836067 + 3.17640 NA non-coding (NR_027768, exon 20 of 23) non-coding (NR_027768, exon 20 of 23) -46404 NM_001122838 222236 Hs.324271 NM_198990 HPRD:14809 NAPEPLD FMP30|NAPE-PLD N-acyl phosphatidylethanolamine phospholipase D protein-coding 13-PTNLD9-TUMOR_peak_46023 chr6 126111765 126111907 + 3.17462 NA promoter-TSS (NM_001199621) promoter-TSS (NM_001199621) -73 NM_001122842 135112 Hs.171426 NM_181782 HPRD:14814 NCOA7 ERAP140|ESNA1|NCOA7-AS|Nbla00052|Nbla10993|TLDC4|dJ187J11.3 nuclear receptor coactivator 7 protein-coding 13-PTNLD9-TUMOR_peak_39985 chr4 185129783 185129961 + 3.17462 NA intron (NM_153343, intron 1 of 7) L1PA3|LINE|L1 9242 NM_153343 133121 Hs.297814 NM_153343 HPRD:16863 ENPP6 NPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 protein-coding 13-PTNLD9-TUMOR_peak_30010 chr2 232478995 232479110 + 3.17395 NA Intergenic CpG 21477 NM_152614 165100 Hs.98104 NM_152614 HPRD:14602 C2orf57 - chromosome 2 open reading frame 57 protein-coding 13-PTNLD9-TUMOR_peak_24325 chr19 17504081 17504317 + 3.17159 NA Intergenic AluSx1|SINE|Alu 12258 NM_004335 684 Hs.118110 NM_004335 HPRD:02759 BST2 CD317|TETHERIN bone marrow stromal cell antigen 2 protein-coding 13-PTNLD9-TUMOR_peak_16318 chr14 77384878 77385069 + 3.17101 NA Intergenic Intergenic 92248 NM_194287 145497 Hs.147276 NM_194287 HPRD:12621 LRRC74A C14orf166B|LRRC74 leucine rich repeat containing 74A protein-coding 13-PTNLD9-TUMOR_peak_47457 chr7 48179821 48179970 + 3.16933 NA Intergenic LTR22A|LTR|ERVK -31162 NM_152701 154664 Hs.226568 NM_152701 HPRD:07422 ABCA13 - ATP-binding cassette, sub-family A (ABC1), member 13 protein-coding 13-PTNLD9-TUMOR_peak_40976 chr5 58375911 58376023 + 3.16933 NA intron (NM_001104631, intron 5 of 14) intron (NM_001104631, intron 5 of 14) -40628 NM_001197222 5144 Hs.117545 NM_006203 HPRD:02530 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D, cAMP-specific protein-coding 13-PTNLD9-TUMOR_peak_24537 chr19 23737611 23737713 + 3.15641 NA Intergenic LTR7C|LTR|ERV1 132355 NM_138330 171392 Hs.264345 NM_138330 HPRD:18193 ZNF675 TBZF|TIZ zinc finger protein 675 protein-coding 13-PTNLD9-TUMOR_peak_19701 chr16 70780717 70780835 + 3.15549 NA intron (NM_018052, intron 12 of 18) intron (NM_018052, intron 12 of 18) -8187 NR_034083 100130894 Hs.678899 NR_034083 ENSG00000214353 VAC14-AS1 - VAC14 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_18439 chr16 8972166 8972272 + 3.15292 NA Intergenic Intergenic -9350 NM_001278260 23589 Hs.632184 NM_014316 HPRD:08515 CARHSP1 CRHSP-24|CSDC1 calcium regulated heat stable protein 1, 24kDa protein-coding 13-PTNLD9-TUMOR_peak_54014 chr9 95571527 95571721 + 3.15161 NA promoter-TSS (NR_026868) promoter-TSS (NR_026868) -269 NR_026868 138649 Hs.643597 NM_001010925 HPRD:16490 ANKRD19P ANKRD19|bA526D8.2 ankyrin repeat domain 19, pseudogene pseudo 13-PTNLD9-TUMOR_peak_27008 chr2 61244201 61244295 + 3.15161 NA promoter-TSS (NM_002618) promoter-TSS (NM_002618) -564 NM_002618 5194 Hs.161377 NM_002618 HPRD:03475 PEX13 NALD|PBD11A|PBD11B|ZWS peroxisomal biogenesis factor 13 protein-coding 13-PTNLD9-TUMOR_peak_51592 chr8 109961237 109961361 + 3.15161 NA Intergenic Intergenic -138354 NM_003301 7201 Hs.3022 NM_003301 HPRD:11767 TRHR TRH-R thyrotropin-releasing hormone receptor protein-coding 13-PTNLD9-TUMOR_peak_36778 chr3 174494080 174494174 + 3.14132 NA Intergenic Intergenic -82984 NM_207015 254827 Hs.565848 NM_207015 HPRD:16388 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase-like 2 protein-coding 13-PTNLD9-TUMOR_peak_11785 chr12 1034504 1034611 + 3.14132 NA TTS (NM_001297420) TTS (NM_001297420) 7685 NM_001297420 5893 Hs.410355 NM_134422 HPRD:11855 RAD52 - RAD52 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_19440 chr16 57514231 57514382 + 3.14132 NA intron (NM_018110, intron 1 of 8) intron (NM_018110, intron 1 of 8) 6079 NM_018110 55715 Hs.279832 NM_018110 HPRD:16316 DOK4 - docking protein 4 protein-coding 13-PTNLD9-TUMOR_peak_7844 chr10 80694884 80694978 + 3.14132 NA Intergenic L2b|LINE|L2 132274 NR_024429 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_55730 chrX 39754755 39754865 + 3.14132 NA Intergenic Intergenic 201909 NM_017745 54880 Hs.659681 NM_017745 HPRD:06458 BCOR ANOP2|MAA2|MCOPS2 BCL6 corepressor protein-coding 13-PTNLD9-TUMOR_peak_6673 chr10 23641041 23641163 + 3.14132 NA Intergenic MLT1I|LTR|ERVL-MaLR -7330 NM_153714 256815 Hs.522360 NM_153714 HPRD:12585 C10orf67 - chromosome 10 open reading frame 67 protein-coding 13-PTNLD9-TUMOR_peak_27743 chr2 97454251 97454345 + 3.13656 NA intron (NM_020184, intron 1 of 6) intron (NM_020184, intron 1 of 6) -9717 NR_036074 100422928 NR_036074 MIR3127 - microRNA 3127 ncRNA 13-PTNLD9-TUMOR_peak_24280 chr19 16569626 16569789 + 3.12997 NA intron (NM_001258374, intron 1 of 23) Tigger3a|DNA|TcMar-Tigger 13116 NM_001258374 58513 Hs.654639 NM_021235 HPRD:09445 EPS15L1 EPS15R epidermal growth factor receptor pathway substrate 15-like 1 protein-coding 13-PTNLD9-TUMOR_peak_26695 chr2 42949674 42949824 + 3.12838 NA intron (NM_001282755, intron 16 of 17) intron (NM_001282755, intron 16 of 17) 41652 NM_148962 165140 Hs.168439 NM_148962 HPRD:17812 OXER1 GPCR|GPR170|TG1019 oxoeicosanoid (OXE) receptor 1 protein-coding 13-PTNLD9-TUMOR_peak_30619 chr20 23617995 23618162 + 3.12838 NA intron (NM_001288614, intron 1 of 3) CpG 607 NM_000099 1471 Hs.304682 NM_000099 HPRD:05056 CST3 ARMD11 cystatin C protein-coding 13-PTNLD9-TUMOR_peak_23719 chr19 4374710 4374867 + 3.12333 NA intron (NM_001199944, intron 1 of 9) intron (NM_001199944, intron 1 of 9) 25627 NM_001199944 6455 Hs.97616 NM_003025 HPRD:03462 SH3GL1 CNSA1|EEN|SH3D2B|SH3P8 SH3-domain GRB2-like 1 protein-coding 13-PTNLD9-TUMOR_peak_3772 chr1 154297245 154297339 + 3.12085 NA promoter-TSS (NM_001005855) promoter-TSS (NM_001005855) -744 NM_001005855 57198 Hs.435700 NM_020452 HPRD:05794 ATP8B2 ATPID ATPase, aminophospholipid transporter, class I, type 8B, member 2 protein-coding 13-PTNLD9-TUMOR_peak_26819 chr2 46768916 46769091 + 3.11686 NA promoter-TSS (NM_012249) promoter-TSS (NM_012249) -864 NM_012249 23433 Hs.709193 NM_012249 RHOQ ARHQ|HEL-S-42|RASL7A|TC10|TC10A ras homolog family member Q protein-coding 13-PTNLD9-TUMOR_peak_48385 chr7 96656926 96657170 + 3.11590 NA Intergenic Intergenic -2905 NM_005221 1749 Hs.99348 NM_005221 HPRD:02492 DLX5 SHFM1D distal-less homeobox 5 protein-coding 13-PTNLD9-TUMOR_peak_14597 chr13 36992169 36992327 + 3.11420 NA Intergenic LTR26|LTR|ERV1 -13719 NM_001111046 8900 Hs.417050 NM_003914 HPRD:04946 CCNA1 CT146 cyclin A1 protein-coding 13-PTNLD9-TUMOR_peak_42955 chr5 169758371 169758492 + 3.11420 NA promoter-TSS (NR_026945) promoter-TSS (NR_026945) 34 NR_108025 257358 Hs.249689 NM_001025454 LINC01366 - long intergenic non-protein coding RNA 1366 ncRNA 13-PTNLD9-TUMOR_peak_47547 chr7 55661393 55661487 + 3.11420 NA Intergenic Intergenic -21240 NM_030796 81552 Hs.488307 NM_030796 HPRD:08526 VOPP1 ECOP|GASP vesicular, overexpressed in cancer, prosurvival protein 1 protein-coding 13-PTNLD9-TUMOR_peak_550 chr1 17034351 17034445 + 3.10756 NA non-coding (NR_026567, exon 2 of 11) non-coding (NR_026567, exon 2 of 11) 12254 NR_026567 284729 Hs.548239 NR_026567 ENSG00000268869 ESPNP dJ1182A14.1 espin pseudogene pseudo 13-PTNLD9-TUMOR_peak_47390 chr7 45138818 45138917 + 3.10538 NA TTS (NM_199122) TTS (NM_199122) 5214 NR_002919 654319 Hs.689711 NR_002919 SNORA5A ACA5|ACA5A/B/C small nucleolar RNA, H/ACA box 5A snoRNA 13-PTNLD9-TUMOR_peak_51347 chr8 97274043 97274137 + 3.10538 NA promoter-TSS (NM_015942) promoter-TSS (NM_015942) -24 NM_014754 9791 Hs.292579 NM_014754 PTDSS1 LMHD|PSS1|PSSA phosphatidylserine synthase 1 protein-coding 13-PTNLD9-TUMOR_peak_14330 chr12 131914286 131914428 + 3.10538 NA Intergenic Intergenic 82342 NR_103736 338797 Hs.592007 NM_001025466 LOC338797 - uncharacterized LOC338797 ncRNA 13-PTNLD9-TUMOR_peak_11770 chr12 642206 642300 + 3.09633 NA intron (NM_173593, intron 1 of 19) intron (NM_173593, intron 1 of 19) 72710 NM_173593 283358 Hs.504416 NM_173593 HPRD:12514 B4GALNT3 - beta-1,4-N-acetyl-galactosaminyl transferase 3 protein-coding 13-PTNLD9-TUMOR_peak_28323 chr2 122732863 122732977 + 3.09633 NA Intergenic Intergenic 219799 NR_048557 7247 Hs.75066 NM_004622 HPRD:08993 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 13-PTNLD9-TUMOR_peak_6512 chr10 13341637 13341778 + 3.09141 NA promoter-TSS (NM_001037537) promoter-TSS (NM_001037537) 39 NM_001037537 5264 Hs.498732 NM_006214 HPRD:03609 PHYH LN1|LNAP1|PAHX|PHYH1|RD phytanoyl-CoA 2-hydroxylase protein-coding 13-PTNLD9-TUMOR_peak_17267 chr15 50474562 50474656 + 3.08693 NA 5' UTR (NM_003645, exon 1 of 10) 5' UTR (NM_003645, exon 1 of 10) 216 NM_003645 11001 Hs.11729 NM_003645 HPRD:11935 SLC27A2 ACSVL1|FACVL1|FATP2|HsT17226|VLACS|VLCS|hFACVL1 solute carrier family 27 (fatty acid transporter), member 2 protein-coding 13-PTNLD9-TUMOR_peak_42674 chr5 150544505 150544644 + 3.08693 NA Intergenic Intergenic -7131 NM_001155 309 Hs.412117 NM_001155 HPRD:00231 ANXA6 ANX6|CBP68 annexin A6 protein-coding 13-PTNLD9-TUMOR_peak_45096 chr6 43603510 43603604 + 3.08256 NA promoter-TSS (NM_014628) promoter-TSS (NM_014628) -20 NM_014628 9587 Hs.122346 NM_014628 HPRD:10065 MAD2L1BP CMT2 MAD2L1 binding protein protein-coding 13-PTNLD9-TUMOR_peak_21553 chr17 54759090 54759240 + 3.08256 NA Intergenic L3|LINE|CR1 88105 NM_005450 9241 Hs.248201 NM_005450 HPRD:04291 NOG SYM1|SYNS1 noggin protein-coding 13-PTNLD9-TUMOR_peak_16525 chr14 97249523 97249623 + 3.08256 NA Intergenic Intergenic -14111 NM_003384 7443 Hs.422662 NM_003384 HPRD:03701 VRK1 PCH1|PCH1A vaccinia related kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_33108 chr22 31030588 31030696 + 3.07674 NA Intergenic Intergenic -1151 NM_001001479 339665 Hs.660384 NM_001001479 HPRD:15376 SLC35E4 - solute carrier family 35, member E4 protein-coding 13-PTNLD9-TUMOR_peak_52920 chr9 22206955 22207049 + 3.06000 NA Intergenic Intergenic -197690 NM_078487 1030 Hs.72901 NM_004936 HPRD:02696 CDKN2B CDK4I|INK4B|MTS2|P15|TP15|p15INK4b cyclin-dependent kinase inhibitor 2B (p15, inhibits CDK4) protein-coding 13-PTNLD9-TUMOR_peak_13506 chr12 95467266 95467417 + 3.06000 NA promoter-TSS (NM_001127362) promoter-TSS (NM_001127362) 63 NM_003297 7181 Hs.108301 NM_003297 HPRD:03318 NR2C1 TR2 nuclear receptor subfamily 2, group C, member 1 protein-coding 13-PTNLD9-TUMOR_peak_21588 chr17 55939418 55939534 + 3.06000 NA 3' UTR (NM_001271875, exon 11 of 11) 3' UTR (NM_001271875, exon 11 of 11) -12043 NM_016070 51649 Hs.5836 NM_016070 MRPS23 HSPC329|MRP-S23 mitochondrial ribosomal protein S23 protein-coding 13-PTNLD9-TUMOR_peak_51335 chr8 96281892 96281986 + 3.06000 NA promoter-TSS (NM_177965) promoter-TSS (NM_177965) -477 NM_177965 157657 Hs.548157 NM_177965 HPRD:14104 C8orf37 CORD16|RP64|smalltalk chromosome 8 open reading frame 37 protein-coding 13-PTNLD9-TUMOR_peak_32718 chr22 19039054 19039186 + 3.06000 NA intron (NM_005137, intron 6 of 9) AluJo|SINE|Alu -3232 NR_024157 25786 Hs.720269 NR_024157 DGCR11 DGS-D DiGeorge syndrome critical region gene 11 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_32151 chr21 33973464 33973563 + 3.06000 NA TTS (NM_021254) TTS (NM_021254) 11400 NR_036552 56683 Hs.5811 NM_017835 HPRD:10756 C21orf59 C21orf48|CILD26|FBB18 chromosome 21 open reading frame 59 protein-coding 13-PTNLD9-TUMOR_peak_52069 chr8 131074764 131074891 + 3.06000 NA intron (NM_018482, intron 27 of 29) intron (NM_018482, intron 27 of 29) 22187 NR_045385 100507117 Hs.106015 NR_045385 ASAP1-IT2 - ASAP1 intronic transcript 2 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_35466 chr3 117250100 117250256 + 3.06000 NA Intergenic Intergenic 609900 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 13-PTNLD9-TUMOR_peak_23605 chr19 1172958 1173056 + 3.05742 NA intron (NM_014963, intron 1 of 31) AT_rich|Low_complexity|Low_complexity 1275 NM_014963 22904 Hs.408708 NM_014963 HPRD:17203 SBNO2 KIAA0963|SNO|STNO strawberry notch homolog 2 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_56602 chrX 149712260 149712381 + 3.05567 NA Intergenic L2b|LINE|L2 -24727 NM_000252 4534 Hs.655056 NM_000252 HPRD:02331 MTM1 CNM|MTMX|XLMTM myotubularin 1 protein-coding 13-PTNLD9-TUMOR_peak_31304 chr20 46524264 46524416 + 3.04430 NA Intergenic D20S16|Satellite|Satellite -87630 NR_109942 101060004 Hs.129970 NR_109942 LINC01523 - long intergenic non-protein coding RNA 1523 ncRNA 13-PTNLD9-TUMOR_peak_31429 chr20 48909177 48909372 + 3.03665 NA promoter-TSS (NR_034124) promoter-TSS (NR_034124) 17 NR_034124 284751 Hs.282325 NM_001025463 HPRD:18771 LINC01270 - long intergenic non-protein coding RNA 1270 ncRNA 13-PTNLD9-TUMOR_peak_11258 chr11 113535941 113536093 + 3.03665 NA Intergenic LTR10B|LTR|ERV1 41078 NR_110047 80975 Hs.46720 NM_030770 HPRD:05995 TMPRSS5 SPINESIN transmembrane protease, serine 5 protein-coding 13-PTNLD9-TUMOR_peak_54248 chr9 103344040 103344197 + 3.03665 NA intron (NM_001018116, intron 1 of 1) intron (NM_001018116, intron 1 of 1) 3757 NM_001018116 347273 Hs.99004 NM_001018116 HPRD:18599 MURC CAVIN4|cavin-4 muscle-related coiled-coil protein protein-coding 13-PTNLD9-TUMOR_peak_14471 chr13 27844864 27845010 + 3.03406 NA 5' UTR (NM_206827, exon 1 of 4) 5' UTR (NM_206827, exon 1 of 4) 473 NM_206827 387496 Hs.192131 NM_206827 HPRD:17956 RASL11A - RAS-like, family 11, member A protein-coding 13-PTNLD9-TUMOR_peak_42200 chr5 136632142 136632358 + 3.03406 NA intron (NM_004598, intron 2 of 10) intron (NM_004598, intron 2 of 10) 202768 NM_004598 6695 Hs.596136 NM_004598 HPRD:11887 SPOCK1 SPOCK|TESTICAN|TIC1 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1 protein-coding 13-PTNLD9-TUMOR_peak_17042 chr15 38365001 38365155 + 3.03406 NA Intergenic CpG 32484 NR_120330 101928227 Hs.602381 NR_120330 LOC101928227 - uncharacterized LOC101928227 ncRNA 13-PTNLD9-TUMOR_peak_14785 chr13 52217511 52217691 + 3.03406 NA intron (NM_052950, intron 1 of 11) L2b|LINE|L2 59117 NM_052950 115825 Hs.46506 NM_052950 HPRD:18294 WDFY2 PROF|WDF2|ZFYVE22 WD repeat and FYVE domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_18631 chr16 16202817 16202991 + 3.03406 NA intron (NM_004996, intron 21 of 30) intron (NM_004996, intron 21 of 30) 114424 NM_001171 368 Hs.442182 NM_001171 HPRD:04453 ABCC6 ABC34|ARA|EST349056|GACI2|MLP1|MOAT-E|MOATE|MRP6|PXE|PXE1|URG7 ATP-binding cassette, sub-family C (CFTR/MRP), member 6 protein-coding 13-PTNLD9-TUMOR_peak_40737 chr5 43079154 43079313 + 3.03406 NA intron (NR_102752, intron 2 of 2) LTR23|LTR|ERV1 -11692 NR_104651 648987 Hs.649468 NR_034085 ENSG00000177738 LOC648987 - uncharacterized LOC648987 ncRNA 13-PTNLD9-TUMOR_peak_39470 chr4 141677550 141677727 + 3.03015 NA promoter-TSS (NM_015130) promoter-TSS (NM_015130) -167 NM_015130 23158 Hs.480819 NM_015130 HPRD:11115 TBC1D9 MDR1 TBC1 domain family, member 9 (with GRAM domain) protein-coding 13-PTNLD9-TUMOR_peak_14096 chr12 122064865 122065000 + 3.02936 NA exon (NM_032790, exon 1 of 2) exon (NM_032790, exon 1 of 2) 477 NM_032790 84876 Hs.55148 NM_032790 ORAI1 CRACM1|IMD9|ORAT1|TAM2|TMEM142A ORAI calcium release-activated calcium modulator 1 protein-coding 13-PTNLD9-TUMOR_peak_25021 chr19 41468561 41468655 + 3.01724 NA Intergenic Intergenic -28596 NM_000767 1555 Hs.1360 NM_000767 HPRD:00477 CYP2B6 CPB6|CYP2B|CYP2B7|CYP2B7P|CYPIIB6|EFVM|IIB1|P450 cytochrome P450, family 2, subfamily B, polypeptide 6 protein-coding 13-PTNLD9-TUMOR_peak_37438 chr3 196439402 196439535 + 3.01724 NA promoter-TSS (NM_032898) promoter-TSS (NM_032898) 223 NM_001166304 54965 Hs.223296 NM_017861 HPRD:07921 PIGX PIG-X phosphatidylinositol glycan anchor biosynthesis, class X protein-coding 13-PTNLD9-TUMOR_peak_8986 chr11 8855252 8855443 + 3.01458 NA intron (NM_005418, intron 3 of 22) intron (NM_005418, intron 3 of 22) -22465 NM_139157 6764 Hs.117715 NM_005418 HPRD:00780 ST5 DENND2B|HTS1|p126 suppression of tumorigenicity 5 protein-coding 13-PTNLD9-TUMOR_peak_27748 chr2 97505170 97505297 + 3.01458 NA 3' UTR (NM_144994, exon 9 of 9) 3' UTR (NM_144994, exon 9 of 9) 4525 NM_144994 200539 Hs.643430 NM_144994 HPRD:12462 ANKRD23 DARP|MARP3 ankyrin repeat domain 23 protein-coding 13-PTNLD9-TUMOR_peak_53200 chr9 37913778 37913955 + 3.01458 NA Intergenic Intergenic -9516 NR_024873 92014 Hs.634120 NM_033412 HPRD:14370 SLC25A51 CG7943|MCART1 solute carrier family 25, member 51 protein-coding 13-PTNLD9-TUMOR_peak_51195 chr8 81279595 81279716 + 3.01458 NA Intergenic Intergenic -118199 NM_001277145 65986 Hs.591868 NM_023929 HPRD:15689 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 13-PTNLD9-TUMOR_peak_13508 chr12 95493276 95493432 + 3.01458 NA intron (NM_018351, intron 14 of 20) L2a|LINE|L2 -25950 NM_001032287 7181 Hs.108301 NM_003297 HPRD:03318 NR2C1 TR2 nuclear receptor subfamily 2, group C, member 1 protein-coding 13-PTNLD9-TUMOR_peak_49402 chr7 140745053 140745165 + 3.01335 NA Intergenic MIR|SINE|MIR -28923 NM_001195278 100507421 Hs.283851 NM_001195278 ENSG00000261115 TMEM178B - transmembrane protein 178B protein-coding 13-PTNLD9-TUMOR_peak_424 chr1 11779249 11779426 + 3.00761 NA intron (NM_198545, intron 6 of 6) L1MC2|LINE|L1 -16805 NM_001040196 57085 Hs.464438 NM_020350 HPRD:16379 AGTRAP ATRAP angiotensin II receptor-associated protein protein-coding 13-PTNLD9-TUMOR_peak_41284 chr5 73839011 73839155 + 3.00761 NA Intergenic Intergenic -96765 NM_001292004 3074 Hs.69293 NM_000521 HPRD:06043 HEXB ENC-1AS|HEL-248 hexosaminidase B (beta polypeptide) protein-coding 13-PTNLD9-TUMOR_peak_45717 chr6 90354929 90355054 + 3.00761 NA intron (NM_014611, intron 100 of 101) intron (NM_014611, intron 100 of 101) -6517 NM_020466 57226 Hs.177275 NM_020466 HPRD:13146 LYRM2 DJ122O8.2 LYR motif containing 2 protein-coding 13-PTNLD9-TUMOR_peak_20071 chr16 88373645 88373739 + 2.99256 NA Intergenic Intergenic -120187 NM_001127464 84627 Hs.54925 NM_001127464 ENSG00000225614 ZNF469 BCS|BCS1 zinc finger protein 469 protein-coding 13-PTNLD9-TUMOR_peak_42730 chr5 153847290 153847401 + 2.99256 NA Intergenic Intergenic 10479 NM_004821 9421 Hs.152531 NM_004821 HPRD:03871 HAND1 Hxt|Thing1|bHLHa27|eHand heart and neural crest derivatives expressed 1 protein-coding 13-PTNLD9-TUMOR_peak_31711 chr20 57393697 57393791 + 2.99256 NA promoter-TSS (NR_029844) promoter-TSS (NR_029844) -376 NR_030580 100126296 NR_030580 miRBase:MI0005523 MIR298 MIRN298|hsa-mir-298 microRNA 298 ncRNA 13-PTNLD9-TUMOR_peak_35330 chr3 111481968 111482156 + 2.99256 NA intron (NM_001134437, intron 1 of 17) intron (NM_001134437, intron 1 of 17) 30735 NM_001134437 90102 Hs.603252 NM_145753 HPRD:06611 PHLDB2 LL5b|LL5beta pleckstrin homology-like domain, family B, member 2 protein-coding 13-PTNLD9-TUMOR_peak_25993 chr2 7171887 7171995 + 2.98124 NA intron (NM_014746, intron 8 of 8) MER58A|DNA|hAT-Charlie 46070 NR_110252 101929452 NR_110252 ENSG00000223884 LOC101929452 - uncharacterized LOC101929452 ncRNA 13-PTNLD9-TUMOR_peak_46357 chr6 154831378 154831511 + 2.98124 NA 5' UTR (NM_173515, exon 1 of 13) 5' UTR (NM_173515, exon 1 of 13) 309 NM_173515 154043 Hs.16064 NM_173515 CNKSR3 MAGI1 CNKSR family member 3 protein-coding 13-PTNLD9-TUMOR_peak_10493 chr11 70795325 70795433 + 2.98124 NA intron (NM_012309, intron 7 of 22) intron (NM_012309, intron 7 of 22) -76906 NR_037437 100500844 NR_037437 MIR3664 - microRNA 3664 ncRNA 13-PTNLD9-TUMOR_peak_29888 chr2 221484261 221484379 + 2.98124 NA Intergenic Intergenic -713034 NR_036228 100422959 NR_036228 miRBase:MI0015874 MIR4268 - microRNA 4268 ncRNA 13-PTNLD9-TUMOR_peak_50416 chr8 26948803 26948943 + 2.98124 NA Intergenic L2c|LINE|L2 167083 NM_001283053 81551 Hs.201058 NM_030795 HPRD:18120 STMN4 RB3 stathmin-like 4 protein-coding 13-PTNLD9-TUMOR_peak_35856 chr3 129168246 129168363 + 2.98124 NA intron (NM_052989, intron 1 of 29) L2c|LINE|L2 -9282 NM_001276272 8930 Hs.35947 NM_003925 HPRD:04654 MBD4 MED1 methyl-CpG binding domain protein 4 protein-coding 13-PTNLD9-TUMOR_peak_21360 chr17 46567474 46567653 + 2.98124 NA Intergenic AluY|SINE|Alu 40709 NM_002144 3211 Hs.99992 NM_002144 HOXB1 HCFP3|HOX2|HOX2I|Hox-2.9 homeobox B1 protein-coding 13-PTNLD9-TUMOR_peak_53030 chr9 33290074 33290264 + 2.97751 NA promoter-TSS (NM_147133) promoter-TSS (NM_147133) -249 NM_002504 4799 Hs.413074 NM_002504 HPRD:11936 NFX1 NFX2|TEG-42|Tex42 nuclear transcription factor, X-box binding 1 protein-coding 13-PTNLD9-TUMOR_peak_50322 chr8 22857328 22857448 + 2.97050 NA 5' UTR (NM_015178, exon 1 of 10) 5' UTR (NM_015178, exon 1 of 10) 296 NM_015178 23221 Hs.372688 NM_015178 HPRD:06300 RHOBTB2 DBC2 Rho-related BTB domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_11091 chr11 104839883 104840022 + 2.97050 NA promoter-TSS (NM_001225) promoter-TSS (NM_001225) -627 NM_001225 837 Hs.138378 NM_001225 HPRD:04047 CASP4 ICE(rel)II|ICEREL-II|ICH-2|Mih1/TX|TX caspase 4, apoptosis-related cysteine peptidase protein-coding 13-PTNLD9-TUMOR_peak_7430 chr10 57391055 57391185 + 2.97050 NA Intergenic CpG 32370 NM_001190478 100463289 Hs.727204 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2-like 5 protein-coding 13-PTNLD9-TUMOR_peak_7817 chr10 79373327 79373496 + 2.95952 NA intron (NM_001271519, intron 1 of 28) intron (NM_001271519, intron 1 of 28) 24166 NM_001271520 3778 Hs.144795 NM_002247 HPRD:15967 KCNMA1 BKTM|KCa1.1|MaxiK|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|mSLO1 potassium large conductance calcium-activated channel, subfamily M, alpha member 1 protein-coding 13-PTNLD9-TUMOR_peak_19923 chr16 84058492 84058658 + 2.95555 NA intron (NM_001080442, intron 5 of 9) AluSz|SINE|Alu 17187 NM_001080442 146167 NM_001080442 ENSG00000166558 SLC38A8 FVH2 solute carrier family 38, member 8 protein-coding 13-PTNLD9-TUMOR_peak_20656 chr17 20361180 20361291 + 2.95555 NA intron (NM_001042685, intron 3 of 10) intron (NM_001042685, intron 3 of 10) 9613 NM_001042685 284194 Hs.462402 NM_001042685 ENSG00000170298 LGALS9B - lectin, galactoside-binding, soluble, 9B protein-coding 13-PTNLD9-TUMOR_peak_7470 chr10 61792544 61792699 + 2.95555 NA intron (NM_001149, intron 20 of 20) intron (NM_001149, intron 20 of 20) -71950 NR_024340 283025 Hs.522955 NM_001017982 ENSG00000235931 C10orf40 - chromosome 10 open reading frame 40 ncRNA 13-PTNLD9-TUMOR_peak_54545 chr9 117396268 117396449 + 2.95555 NA intron (NM_153045, intron 6 of 8) intron (NM_153045, intron 6 of 8) 22652 NM_153045 203197 Hs.522357 NM_153045 HPRD:12988 C9orf91 - chromosome 9 open reading frame 91 protein-coding 13-PTNLD9-TUMOR_peak_38132 chr4 26033869 26034043 + 2.95555 NA Intergenic Intergenic 118142 NM_001145432 389203 Hs.479386 NM_001145432 ENSG00000250317 SMIM20 C4orf52 small integral membrane protein 20 protein-coding 13-PTNLD9-TUMOR_peak_37285 chr3 193646740 193646846 + 2.95555 NA Intergenic Intergenic 65234 NR_027764 100128023 Hs.730112 NR_027764 DPPA2P3 - developmental pluripotency associated 2 pseudogene 3 pseudo 13-PTNLD9-TUMOR_peak_50184 chr8 18697251 18697417 + 2.95555 NA intron (NM_015310, intron 4 of 15) intron (NM_015310, intron 4 of 15) -30929 NM_206909 23362 Hs.434255 NM_015310 HPRD:11462 PSD3 EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_3035 chr1 117901146 117901311 + 2.95555 NA Intergenic L1PA3|LINE|L1 -8857 NM_006699 10905 Hs.435938 NM_006699 MAN1A2 MAN1B mannosidase, alpha, class 1A, member 2 protein-coding 13-PTNLD9-TUMOR_peak_43631 chr6 6467648 6467759 + 2.95555 NA intron (NR_026970, intron 3 of 7) intron (NR_026970, intron 3 of 7) -121231 NM_004271 9450 Hs.653138 NM_004271 LY86 MD-1|MMD-1|dJ80N2.1 lymphocyte antigen 86 protein-coding 13-PTNLD9-TUMOR_peak_30277 chr20 1875053 1875185 + 2.95555 NA promoter-TSS (NM_080792) promoter-TSS (NM_080792) 306 NM_001040022 140885 Hs.581021 NM_080792 HPRD:03912 SIRPA BIT|CD172A|MFR|MYD-1|P84|PTPNS1|SHPS1|SIRP signal-regulatory protein alpha protein-coding 13-PTNLD9-TUMOR_peak_23790 chr19 6767488 6767700 + 2.94864 NA promoter-TSS (NM_005490) promoter-TSS (NM_005490) -71 NM_005490 10045 Hs.439645 NM_005490 HPRD:05283 SH2D3A NSP1 SH2 domain containing 3A protein-coding 13-PTNLD9-TUMOR_peak_50690 chr8 40835798 40835951 + 2.94864 NA Intergenic Intergenic -80531 NM_001135731 79698 Hs.591850 NM_024645 HPRD:07837 ZMAT4 - zinc finger, matrin-type 4 protein-coding 13-PTNLD9-TUMOR_peak_27874 chr2 102680160 102680254 + 2.94071 NA Intergenic Intergenic -6629 NM_001288706 3554 Hs.701982 NM_000877 HPRD:00994 IL1R1 CD121A|D2S1473|IL-1R-alpha|IL1R|IL1RA|P80 interleukin 1 receptor, type I protein-coding 13-PTNLD9-TUMOR_peak_54556 chr9 117821325 117821419 + 2.92963 NA intron (NM_002160, intron 14 of 27) intron (NM_002160, intron 14 of 27) 59164 NM_002160 3371 Hs.143250 NM_002160 HPRD:01756 TNC 150-225|DFNA56|GMEM|GP|HXB|JI|TN|TN-C tenascin C protein-coding 13-PTNLD9-TUMOR_peak_23981 chr19 11200085 11200231 + 2.92903 NA 5' UTR (NM_001195798, exon 1 of 18) 5' UTR (NM_001195798, exon 1 of 18) 120 NM_001195800 3949 Hs.213289 NM_000527 HPRD:06091 LDLR FH|FHC|LDLCQ2 low density lipoprotein receptor protein-coding 13-PTNLD9-TUMOR_peak_35520 chr3 120188816 120189023 + 2.92756 NA Intergenic MER41B|LTR|ERV1 -19001 NM_007085 11167 Hs.269512 NM_007085 FSTL1 FRP|FSL1|MIR198 follistatin-like 1 protein-coding 13-PTNLD9-TUMOR_peak_36495 chr3 156398893 156398987 + 2.92713 NA intron (NM_015508, intron 2 of 5) intron (NM_015508, intron 2 of 5) 4487 NM_001184718 25976 Hs.744050 NM_015508 HPRD:18192 TIPARP ARTD14|PARP7|pART14 TCDD-inducible poly(ADP-ribose) polymerase protein-coding 13-PTNLD9-TUMOR_peak_22396 chr18 97045 97246 + 2.92713 NA Intergenic TAR1|Satellite|telo -11920 NR_033770 727758 Hs.585843 NR_033770 ROCK1P1 - Rho-associated, coiled-coil containing protein kinase 1 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_18075 chr15 99982848 99983070 + 2.92713 NA Intergenic Intergenic -123174 NM_005587 4205 Hs.268675 NM_005587 HPRD:02807 MEF2A ADCAD1|RSRFC4|RSRFC9|mef2 myocyte enhancer factor 2A protein-coding 13-PTNLD9-TUMOR_peak_3476 chr1 149223003 149223216 + 2.92320 NA Intergenic Intergenic -64021 NR_111933 388692 Hs.271249 NM_001013644 LOC388692 - uncharacterized LOC388692 ncRNA 13-PTNLD9-TUMOR_peak_29545 chr2 202084521 202084663 + 2.90473 NA 3' UTR (NM_032976, exon 9 of 9) 3' UTR (NM_032976, exon 9 of 9) -13574 NM_033355 841 Hs.599762 NM_001228 HPRD:03459 CASP8 ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5 caspase 8, apoptosis-related cysteine peptidase protein-coding 13-PTNLD9-TUMOR_peak_39855 chr4 170533256 170533410 + 2.90473 NA 5' UTR (NM_012224, exon 1 of 34) 5' UTR (NM_012224, exon 1 of 34) 445 NM_012224 4750 Hs.481181 NM_012224 HPRD:06847 NEK1 NY-REN-55|SRPS2|SRPS2A|SRTD6 NIMA-related kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_34335 chr3 42077985 42078214 + 2.90473 NA Intergenic Intergenic -54647 NM_001042646 22906 Hs.535711 NM_014965 HPRD:09732 TRAK1 MILT1|OIP106 trafficking protein, kinesin binding 1 protein-coding 13-PTNLD9-TUMOR_peak_22331 chr17 80256176 80256270 + 2.90473 NA Intergenic Intergenic 19257 NM_006137 924 Hs.36972 NM_006137 HPRD:01732 CD7 GP40|LEU-9|TP41|Tp40 CD7 molecule protein-coding 13-PTNLD9-TUMOR_peak_41069 chr5 65220984 65221159 + 2.89421 NA Intergenic CpG -1311 NM_001253701 55914 Hs.591774 NM_018695 HPRD:06090 ERBB2IP ERBIN|HEL-S-78|LAP2 erbb2 interacting protein protein-coding 13-PTNLD9-TUMOR_peak_6948 chr10 35930039 35930218 + 2.89039 NA promoter-TSS (NR_039831) promoter-TSS (NR_039831) 52 NR_039831 100616500 NR_039831 MIR4683 - microRNA 4683 ncRNA 13-PTNLD9-TUMOR_peak_20942 chr17 36605826 36605930 + 2.88391 NA intron (NM_001199417, intron 1 of 23) intron (NM_001199417, intron 1 of 23) 21158 NM_001199417 57636 Hs.374446 NM_020876 ENSG00000225485 ARHGAP23 - Rho GTPase activating protein 23 protein-coding 13-PTNLD9-TUMOR_peak_36944 chr3 183483294 183483468 + 2.88391 NA intron (NM_018023, intron 15 of 30) intron (NM_018023, intron 15 of 30) 60012 NM_024871 79929 Hs.478465 NM_024871 HPRD:07793 MAP6D1 MAPO6D1|SL21 MAP6 domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_39933 chr4 183207304 183207482 + 2.88366 NA Intergenic LTR78B|LTR|ERV1 -37744 NM_001080477 55714 Hs.130438 NM_001080477 ENSG00000218336 TENM3 MCOPCB9|ODZ3|TNM3|Ten-m3 teneurin transmembrane protein 3 protein-coding 13-PTNLD9-TUMOR_peak_657 chr1 23115895 23116039 + 2.88366 NA intron (NM_004442, intron 3 of 15) intron (NM_004442, intron 3 of 15) 69957 NR_039832 100616391 NR_039832 MIR4684 - microRNA 4684 ncRNA 13-PTNLD9-TUMOR_peak_33303 chr22 39988807 39988932 + 2.87969 NA intron (NM_001003406, intron 1 of 35) intron (NM_001003406, intron 1 of 35) 22111 NM_001003406 8911 Hs.125116 NM_021096 HPRD:10500 CACNA1I Cav3.3|ca(v)3.3 calcium channel, voltage-dependent, T type, alpha 1I subunit protein-coding 13-PTNLD9-TUMOR_peak_7229 chr10 47042451 47042545 + 2.87969 NA Intergenic Intergenic -41036 NM_005972 5540 Hs.524719 NM_005972 HPRD:03476 NPY4R NPY4-R|PP1|PPYR1|Y4 neuropeptide Y receptor Y4 protein-coding 13-PTNLD9-TUMOR_peak_49197 chr7 134422501 134422595 + 2.87969 NA Intergenic L1MEd|LINE|L1 -41616 NM_004342 800 Hs.490203 NM_004342 HPRD:00251 CALD1 CDM|H-CAD|HCAD|L-CAD|LCAD|NAG22 caldesmon 1 protein-coding 13-PTNLD9-TUMOR_peak_44106 chr6 23940772 23940902 + 2.87969 NA Intergenic Intergenic -185577 NM_080723 140767 Hs.726270 NM_080723 HPRD:18285 NRSN1 VMP|p24 neurensin 1 protein-coding 13-PTNLD9-TUMOR_peak_33578 chr3 4697814 4697933 + 2.87969 NA intron (NM_001099952, intron 12 of 58) intron (NM_001099952, intron 12 of 58) 95401 NR_004428 100126791 Hs.663059 NR_004428 ENSG00000235947 EGOT EGO|NCRNA00190 eosinophil granule ontogeny transcript (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_33262 chr22 38806469 38806617 + 2.87969 NA Intergenic SVA_B|Other|Other -11612 NR_002821 400927 Hs.720223 NR_002821 LOC400927 - TPTE and PTEN homologous inositol lipid phosphatase pseudogene pseudo 13-PTNLD9-TUMOR_peak_43391 chr6 913482 913596 + 2.87969 NA Intergenic Intergenic 45041 NR_110853 101927691 Hs.552556 NR_110853 LOC101927691 - uncharacterized LOC101927691 ncRNA 13-PTNLD9-TUMOR_peak_42320 chr5 139721330 139721424 + 2.87803 NA intron (NM_001945, intron 3 of 5) intron (NM_001945, intron 3 of 5) 4811 NM_001945 1839 Hs.799 NM_001945 HPRD:00526 HBEGF DTR|DTS|DTSF|HEGFL heparin-binding EGF-like growth factor protein-coding 13-PTNLD9-TUMOR_peak_56745 chrX 154115084 154115243 + 2.86287 NA promoter-TSS (NM_019863) promoter-TSS (NM_019863) 513 NM_001007523 474383 Hs.533543 NM_001007523 F8A2 - coagulation factor VIII-associated 2 protein-coding 13-PTNLD9-TUMOR_peak_29378 chr2 192015526 192015676 + 2.86235 NA intron (NM_001243835, intron 1 of 23) intron (NM_001243835, intron 1 of 23) 385 NM_003151 6775 Hs.80642 NM_003151 HPRD:02779 STAT4 SLEB11 signal transducer and activator of transcription 4 protein-coding 13-PTNLD9-TUMOR_peak_43084 chr5 173251273 173251377 + 2.86235 NA Intergenic Intergenic -33380 NR_108028 101928154 Hs.366725 NR_108028 LINC01485 - long intergenic non-protein coding RNA 1485 ncRNA 13-PTNLD9-TUMOR_peak_16768 chr15 22290796 22290890 + 2.86235 NA intron (NR_110480, intron 3 of 8) intron (NR_110480, intron 3 of 8) -12369 NR_110481 101927079 Hs.525666 NR_110116 LOC101927079 - uncharacterized LOC101927079 ncRNA 13-PTNLD9-TUMOR_peak_10564 chr11 72525625 72525762 + 2.86171 NA intron (NM_033388, intron 1 of 17) CpG 242 NM_033388 89849 Hs.653186 NM_033388 HPRD:10959 ATG16L2 ATG16B|WDR80 autophagy related 16-like 2 (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_22314 chr17 80170641 80170803 + 2.86117 NA promoter-TSS (NM_198082) promoter-TSS (NM_198082) -33 NM_198082 284001 Hs.631724 NM_152675 HPRD:08041 CCDC57 - coiled-coil domain containing 57 protein-coding 13-PTNLD9-TUMOR_peak_51362 chr8 98775893 98776071 + 2.85465 NA Intergenic Intergenic -11827 NM_018407 55353 Hs.492314 NM_018407 LAPTM4B LAPTM4beta|LC27 lysosomal protein transmembrane 4 beta protein-coding 13-PTNLD9-TUMOR_peak_19338 chr16 52586666 52586830 + 2.85465 NA intron (NR_033920, intron 3 of 3) intron (NR_033920, intron 3 of 3) -5034 NM_001146188 27324 Hs.460789 NM_001080430 ENSG00000103460 TOX3 CAGF9|TNRC9 TOX high mobility group box family member 3 protein-coding 13-PTNLD9-TUMOR_peak_21951 chr17 72848426 72848598 + 2.85465 NA exon (NM_000835, exon 3 of 13) exon (NM_000835, exon 3 of 13) 7495 NR_103735 2905 Hs.436980 NM_000835 HPRD:00699 GRIN2C GluN2C|NMDAR2C|NR2C glutamate receptor, ionotropic, N-methyl D-aspartate 2C protein-coding 13-PTNLD9-TUMOR_peak_29229 chr2 179739414 179739508 + 2.85465 NA intron (NM_173648, intron 12 of 23) L1MEg1|LINE|L1 -67311 NM_001267550 7273 Hs.134602 NM_003319 HPRD:01787 TTN CMD1G|CMH9|CMPD4|EOMFC|HMERF|LGMD2J|MYLK5|TMD titin protein-coding 13-PTNLD9-TUMOR_peak_5674 chr1 227647764 227647912 + 2.85465 NA Intergenic L2a|LINE|L2 -103382 NR_102302 339500 Hs.30323 NM_032755 ZNF678 - zinc finger protein 678 protein-coding 13-PTNLD9-TUMOR_peak_26245 chr2 19547448 19547588 + 2.84733 NA promoter-TSS (NR_039914) promoter-TSS (NR_039914) -672 NR_039914 100616307 NR_039914 miRBase:MI0017398 MIR4757 - microRNA 4757 ncRNA 13-PTNLD9-TUMOR_peak_39447 chr4 140908432 140908628 + 2.84733 NA intron (NM_018717, intron 1 of 5) intron (NM_018717, intron 1 of 5) 166703 NM_018717 55534 Hs.586165 NM_018717 HPRD:10066 MAML3 CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3 mastermind-like 3 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_12864 chr12 53301666 53301793 + 2.83605 NA intron (NM_001256293, intron 1 of 8) intron (NM_001256293, intron 1 of 8) -2861 NM_002273 3856 Hs.533782 NM_002273 HPRD:01015 KRT8 CARD2|CK-8|CK8|CYK8|K2C8|K8|KO keratin 8 protein-coding 13-PTNLD9-TUMOR_peak_1031 chr1 33721136 33721266 + 2.82965 NA promoter-TSS (NM_152493) promoter-TSS (NM_152493) -973 NM_152493 149076 Hs.743358 NM_152493 HPRD:13394 ZNF362 RN|lin-29 zinc finger protein 362 protein-coding 13-PTNLD9-TUMOR_peak_50963 chr8 55358856 55358950 + 2.82965 NA Intergenic Intergenic -11592 NM_022454 64321 Hs.98367 NM_022454 HPRD:18085 SOX17 VUR3 SRY (sex determining region Y)-box 17 protein-coding 13-PTNLD9-TUMOR_peak_53921 chr9 91404779 91404873 + 2.82965 NA Intergenic L1MC4|LINE|L1 -44006 NR_036252 100423015 NR_036252 miRBase:MI0015898 MIR4289 - microRNA 4289 ncRNA 13-PTNLD9-TUMOR_peak_3320 chr1 145515383 145515527 + 2.82284 NA promoter-TSS (NR_073492) promoter-TSS (NR_073492) 290 NR_104033 114814 Hs.356873 NM_057163 GNRHR2 GnRH-II-R gonadotropin-releasing hormone (type 2) receptor 2, pseudogene pseudo 13-PTNLD9-TUMOR_peak_6846 chr10 31107036 31107130 + 2.81162 NA Intergenic Intergenic 125880 NR_036438 645954 Hs.408581 NR_036438 ENSG00000234814 SVILP1 - supervillin pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_39992 chr4 185394174 185394397 + 2.81162 NA intron (NM_002199, intron 1 of 8) CpG 1441 NM_002199 3660 Hs.654566 NM_002199 HPRD:00962 IRF2 IRF-2 interferon regulatory factor 2 protein-coding 13-PTNLD9-TUMOR_peak_25866 chr1_gl000191_random 28974 29080 + 2.81033 NA Intergenic Intergenic 21254 NM_006625 10772 Hs.3530 NM_006625 HPRD:05562 SRSF10 FUSIP1|FUSIP2|NSSR|PPP1R149|SFRS13|SFRS13A|SRp38|SRrp40|TASR|TASR1|TASR2 serine/arginine-rich splicing factor 10 protein-coding 13-PTNLD9-TUMOR_peak_23571 chr19 290198 290292 + 2.80528 NA intron (NM_177526, intron 1 of 5) intron (NM_177526, intron 1 of 5) 924 NM_177543 8612 Hs.465506 NM_003712 HPRD:06180 PPAP2C LPP2|PAP-2c|PAP2-g phosphatidic acid phosphatase type 2C protein-coding 13-PTNLD9-TUMOR_peak_51216 chr8 84932556 84932655 + 2.80528 NA Intergenic L1PA3|LINE|L1 -162848 NM_001100393 138046 Hs.121663 NM_173848 HPRD:11236 RALYL HNRPCL3 RALY RNA binding protein-like protein-coding 13-PTNLD9-TUMOR_peak_21680 chr17 58498746 58498893 + 2.80528 NA Intergenic CpG -1046 NM_181707 124773 Hs.129312 NM_181707 HPRD:14029 C17orf64 - chromosome 17 open reading frame 64 protein-coding 13-PTNLD9-TUMOR_peak_17544 chr15 69871256 69871384 + 2.80528 NA Intergenic Intergenic 17261 NR_026979 145837 Hs.410126 NR_026979 LOC145837 - uncharacterized LOC145837 ncRNA 13-PTNLD9-TUMOR_peak_20276 chr17 3056452 3056601 + 2.80528 NA Intergenic L1PA2|LINE|L1 -25681 NM_003555 8390 Hs.248183 NM_003555 HPRD:17687 OR1G1 OR17-130|OR17-209|OR1G2 olfactory receptor, family 1, subfamily G, member 1 protein-coding 13-PTNLD9-TUMOR_peak_56758 chrX 154612198 154612357 + 2.80141 NA TTS (NR_036049).3 TTS (NR_036049).3 513 NM_001007524 474384 Hs.533543 NM_001007524 F8A3 - coagulation factor VIII-associated 3 protein-coding 13-PTNLD9-TUMOR_peak_5084 chr1 203449708 203449865 + 2.79963 NA intron (NM_002725, intron 1 of 2) intron (NM_002725, intron 1 of 2) 4903 NM_201348 5549 Hs.632481 NM_002725 HPRD:03556 PRELP MST161|MSTP161|SLRR2A proline/arginine-rich end leucine-rich repeat protein protein-coding 13-PTNLD9-TUMOR_peak_36267 chr3 144572997 144573110 + 2.79963 NA Intergenic LTR13A|LTR|ERVK 880886 NM_001134470 205428 Hs.288954 NM_173552 HPRD:14559 C3orf58 DIA1|GoPro49|HASF chromosome 3 open reading frame 58 protein-coding 13-PTNLD9-TUMOR_peak_38546 chr4 69916772 69916937 + 2.79963 NA Intergenic LTR2B|LTR|ERV1 -30739 NM_001075 7365 Hs.201634 NM_001075 UGT2B10 UDPGT2B10 UDP glucuronosyltransferase 2 family, polypeptide B10 protein-coding 13-PTNLD9-TUMOR_peak_48112 chr7 77669916 77670010 + 2.79963 NA intron (NM_001301128, intron 20 of 20) CpG 200516 NM_001127357 57157 Hs.203965 NM_020432 HPRD:15130 PHTF2 - putative homeodomain transcription factor 2 protein-coding 13-PTNLD9-TUMOR_peak_9671 chr11 45827127 45827295 + 2.79593 NA 5' UTR (NM_018389, exon 1 of 2) 5' UTR (NM_018389, exon 1 of 2) 570 NM_018389 55343 Hs.12211 NM_018389 HPRD:09324 SLC35C1 CDG2C|FUCT1 solute carrier family 35 (GDP-fucose transporter), member C1 protein-coding 13-PTNLD9-TUMOR_peak_2543 chr1 94713109 94713235 + 2.79244 NA Intergenic CpG -9865 NM_004815 9411 Hs.483238 NM_004815 ARHGAP29 PARG1 Rho GTPase activating protein 29 protein-coding 13-PTNLD9-TUMOR_peak_7182 chr10 45248449 45248543 + 2.78079 NA Intergenic Intergenic -158268 NM_001123376 643236 Hs.292788 NM_001123376 TMEM72 C10orf127|KSP37|bA285G1.3 transmembrane protein 72 protein-coding 13-PTNLD9-TUMOR_peak_52855 chr9 19464800 19465085 + 2.78079 NA Intergenic Intergenic 56017 NM_001010887 340485 Hs.41379 NM_001010887 ACER2 ALKCDase2|ASAH3L alkaline ceramidase 2 protein-coding 13-PTNLD9-TUMOR_peak_36102 chr3 138413190 138413284 + 2.78079 NA intron (NM_006219, intron 12 of 21) MER68|LTR|ERVL 13226 NM_001256045 5291 Hs.239818 NM_006219 PIK3CB P110BETA|PI3K|PI3KBETA|PIK3C1 phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit beta protein-coding 13-PTNLD9-TUMOR_peak_16589 chr14 101020702 101020811 + 2.78079 NA intron (NM_001159531, intron 1 of 5) intron (NM_001159531, intron 1 of 5) 13651 NM_001159531 57596 Hs.211751 NM_020836 HPRD:06459 BEGAIN - brain-enriched guanylate kinase-associated protein-coding 13-PTNLD9-TUMOR_peak_453 chr1 12508060 12508247 + 2.78079 NA intron (NM_015378, intron 65 of 69) MIRc|SINE|MIR -59147 NR_003025 677885 Hs.658450 NR_003025 SNORA59A ACA59 small nucleolar RNA, H/ACA box 59A snoRNA 13-PTNLD9-TUMOR_peak_17832 chr15 83220543 83220808 + 2.77911 NA intron (NM_001288820, intron 6 of 9) intron (NM_001288820, intron 6 of 9) -11380 NR_111944 6218 Hs.433427 NM_001021 HPRD:01600 RPS17 DBA4|RPS17L|RPS17L1|RPS17L2|S17 ribosomal protein S17 protein-coding 13-PTNLD9-TUMOR_peak_10059 chr11 62211308 62211485 + 2.75771 NA intron (NM_024060, intron 5 of 5) intron (NM_024060, intron 5 of 5) 24889 NM_003357 7356 Hs.523732 NM_003357 HPRD:01884 SCGB1A1 CC10|CC16|CCPBP|CCSP|UGB|UP-1|UP1 secretoglobin, family 1A, member 1 (uteroglobin) protein-coding 13-PTNLD9-TUMOR_peak_23609 chr19 1189603 1189697 + 2.75713 NA Intergenic Intergenic -15368 NM_014963 22904 Hs.408708 NM_014963 HPRD:17203 SBNO2 KIAA0963|SNO|STNO strawberry notch homolog 2 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_21574 chr17 55452850 55453032 + 2.75713 NA intron (NM_138962, intron 5 of 13) intron (NM_138962, intron 5 of 13) 118567 NM_170721 124540 Hs.658922 NM_138962 HPRD:07438 MSI2 MSI2H musashi RNA-binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_46799 chr7 5705092 5705246 + 2.75713 NA intron (NR_046834, intron 2 of 2) intron (NR_046834, intron 2 of 2) 14923 NR_046834 100874342 Hs.665728 NR_046834 RNF216-IT1 - RNF216 intronic transcript 1 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_40450 chr5 17181588 17181739 + 2.75713 NA intron (NR_027253, intron 1 of 2) intron (NR_027253, intron 1 of 2) -35269 NM_001271606 10409 Hs.201641 NM_006317 HPRD:08389 BASP1 CAP-23|CAP23|NAP-22|NAP22 brain abundant, membrane attached signal protein 1 protein-coding 13-PTNLD9-TUMOR_peak_10273 chr11 65788608 65788711 + 2.75713 NA intron (NM_053054, intron 4 of 11) intron (NM_053054, intron 4 of 11) 5329 NM_053054 117144 Hs.189105 NM_053054 HPRD:09396 CATSPER1 CATSPER|SPGF7 cation channel, sperm associated 1 protein-coding 13-PTNLD9-TUMOR_peak_38538 chr4 68566613 68566829 + 2.75713 NA promoter-TSS (NR_015439) promoter-TSS (NR_015439) 168 NM_018227 55236 Hs.212774 NM_018227 UBA6 E1-L2|MOP-4|UBE1L2 ubiquitin-like modifier activating enzyme 6 protein-coding 13-PTNLD9-TUMOR_peak_29295 chr2 185463407 185463613 + 2.75706 NA 5' UTR (NM_194250, exon 1 of 4) 5' UTR (NM_194250, exon 1 of 4) 417 NM_194250 91752 Hs.159528 NM_194250 HPRD:12804 ZNF804A C2orf10 zinc finger protein 804A protein-coding 13-PTNLD9-TUMOR_peak_2532 chr1 94520788 94520954 + 2.73806 NA exon (NM_000350, exon 16 of 50) exon (NM_000350, exon 16 of 50) 65834 NM_000350 24 Hs.416707 NM_000350 HPRD:03408 ABCA4 ABC10|ABCR|ARMD2|CORD3|FFM|RMP|RP19|STGD|STGD1 ATP-binding cassette, sub-family A (ABC1), member 4 protein-coding 13-PTNLD9-TUMOR_peak_54325 chr9 109655527 109655645 + 2.73806 NA intron (NR_031752, intron 2 of 3) X7B_LINE|LINE|CR1 30208 NM_021224 58499 Hs.370379 NM_021224 HPRD:10333 ZNF462 Zfp462 zinc finger protein 462 protein-coding 13-PTNLD9-TUMOR_peak_50227 chr8 20898803 20898955 + 2.73763 NA Intergenic Intergenic 67382 NR_033894 286114 Hs.651884 NR_033894 ENSG00000253199 LOC286114 - uncharacterized LOC286114 ncRNA 13-PTNLD9-TUMOR_peak_53057 chr9 33750461 33750609 + 2.73325 NA promoter-TSS (NM_001197097) promoter-TSS (NM_001197097) 71 NM_001197097 5646 Hs.654513 NM_002771 HPRD:06685 PRSS3 MTG|PRSS4|T9|TRY3|TRY4 protease, serine, 3 protein-coding 13-PTNLD9-TUMOR_peak_45832 chr6 107077301 107077400 + 2.73325 NA promoter-TSS (NM_032730) promoter-TSS (NM_032730) 23 NM_032730 84816 Hs.155839 NM_032730 RTN4IP1 NIMP reticulon 4 interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_12268 chr12 19535077 19535171 + 2.73325 NA Intergenic Intergenic -57484 NM_001114176 121536 Hs.126497 NM_153207 AEBP2 - AE binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_27147 chr2 68107183 68107293 + 2.73325 NA Intergenic Intergenic -54544 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LOC101927701 - uncharacterized LOC101927701 ncRNA 13-PTNLD9-TUMOR_peak_11641 chr11 129843834 129843969 + 2.73325 NA intron (NM_199437, intron 1 of 20) intron (NM_199437, intron 1 of 20) -26384 NM_199438 56980 Hs.275086 NM_020228 HPRD:11455 PRDM10 PFM7 PR domain containing 10 protein-coding 13-PTNLD9-TUMOR_peak_22125 chr17 75775290 75775501 + 2.71730 NA Intergenic Intergenic -50754 NR_104134 100132174 Hs.640110 NR_104134 LOC100132174 - uncharacterized LOC100132174 ncRNA 13-PTNLD9-TUMOR_peak_20532 chr17 16118300 16118493 + 2.71730 NA intron (NM_006311, intron 1 of 45) CpG 478 NM_006311 9611 Hs.462323 NM_006311 HPRD:02911 NCOR1 N-CoR|N-CoR1|PPP1R109|TRAC1|hN-CoR nuclear receptor corepressor 1 protein-coding 13-PTNLD9-TUMOR_peak_55732 chrX 39989619 39989713 + 2.70957 NA intron (NM_001123384, intron 1 of 13) intron (NM_001123384, intron 1 of 13) -32947 NM_001123385 54880 Hs.659681 NM_017745 HPRD:06458 BCOR ANOP2|MAA2|MCOPS2 BCL6 corepressor protein-coding 13-PTNLD9-TUMOR_peak_149 chr1 2574390 2574513 + 2.69745 NA intron (NM_001242672, intron 6 of 6) CpG -9970 NM_033467 79258 Hs.591453 NM_033467 HPRD:07024 MMEL1 MMEL2|NEP2|NEPII|NL1|NL2|SEP membrane metallo-endopeptidase-like 1 protein-coding 13-PTNLD9-TUMOR_peak_28266 chr2 121125422 121125558 + 2.69745 NA Intergenic Intergenic 21771 NM_002193 3625 Hs.1735 NM_002193 HPRD:00934 INHBB - inhibin, beta B protein-coding 13-PTNLD9-TUMOR_peak_44323 chr6 27763690 27763868 + 2.68588 NA Intergenic Intergenic 11930 NM_003519 8340 Hs.137594 NM_003519 HPRD:11898 HIST1H2BL H2B/c|H2BFC|dJ97D16.4 histone cluster 1, H2bl protein-coding 13-PTNLD9-TUMOR_peak_42188 chr5 135852371 135852465 + 2.68588 NA Intergenic Intergenic -151254 NM_001167576 57113 Hs.591263 NM_020389 HPRD:18228 TRPC7 TRP7 transient receptor potential cation channel, subfamily C, member 7 protein-coding 13-PTNLD9-TUMOR_peak_21468 chr17 48585825 48585986 + 2.68588 NA 5' UTR (NM_032133, exon 1 of 19) 5' UTR (NM_032133, exon 1 of 19) 160 NM_032133 84073 Hs.398196 NM_032133 HPRD:11378 MYCBPAP AMAP-1|AMAP1 MYCBP associated protein protein-coding 13-PTNLD9-TUMOR_peak_43363 chr5 180688781 180688962 + 2.68518 NA promoter-TSS (NM_032765) promoter-TSS (NM_032765) 658 NR_102759 100507602 Hs.126768 NR_102759 ENSG00000248275 TRIM52-AS1 - TRIM52 antisense RNA 1 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_49307 chr7 138403068 138403265 + 2.67750 NA intron (NM_130840, intron 18 of 20) intron (NM_130840, intron 18 of 20) -39376 NM_001139456 136306 Hs.99414 NM_174959 HPRD:11235 SVOPL - SVOP-like protein-coding 13-PTNLD9-TUMOR_peak_23161 chr18 47606093 47606244 + 2.67750 NA intron (NM_001080467, intron 1 of 39) intron (NM_001080467, intron 1 of 39) 46765 NR_036204 100422865 NR_036204 MIR4320 - microRNA 4320 ncRNA 13-PTNLD9-TUMOR_peak_32587 chr21 46975765 46975859 + 2.67750 NA Intergenic CpG -13427 NM_194255 6573 Hs.84190 NM_003056 HPRD:02691 SLC19A1 CHMD|FOLT|IFC1|REFC|RFC1 solute carrier family 19 (folate transporter), member 1 protein-coding 13-PTNLD9-TUMOR_peak_24054 chr19 12551407 12551646 + 2.67385 NA intron (NM_005815, intron 1 of 3) CpG 400 NM_005815 10224 Hs.636894 NM_005815 HPRD:09460 ZNF443 ZK1 zinc finger protein 443 protein-coding 13-PTNLD9-TUMOR_peak_36251 chr3 143164090 143164228 + 2.65763 NA intron (NM_173653, intron 12 of 15) LTR78|LTR|ERV1 103071 NR_048544 100885796 Hs.581618 NR_048544 ENSG00000240012 SLC9A9-AS1 - SLC9A9 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_17830 chr15 83209062 83209270 + 2.65763 NA promoter-TSS (NR_111943).2 promoter-TSS (NR_111943).2 42 NR_111943 6218 Hs.433427 NM_001021 HPRD:01600 RPS17 DBA4|RPS17L|RPS17L1|RPS17L2|S17 ribosomal protein S17 protein-coding 13-PTNLD9-TUMOR_peak_12737 chr12 50236382 50236597 + 2.65763 NA intron (NM_181708, intron 1 of 1) intron (NM_181708, intron 1 of 1) 423 NM_181708 144233 Hs.142736 NM_181708 BCDIN3D - BCDIN3 domain containing protein-coding 13-PTNLD9-TUMOR_peak_2430 chr1 90383862 90383985 + 2.63804 NA intron (NM_001134479, intron 2 of 2) intron (NM_001134479, intron 2 of 2) 76602 NR_002830 492303 Hs.550796 NR_002830 GEMIN8P4 - gem (nuclear organelle) associated protein 8 pseudogene 4 pseudo 13-PTNLD9-TUMOR_peak_35962 chr3 133103446 133103556 + 2.63360 NA intron (NM_023943, intron 4 of 5) intron (NM_023943, intron 4 of 5) -15338 NM_003571 8419 Hs.659862 NM_003571 HPRD:04444 BFSP2 CP47|CP49|CTRCT12|LIFL-L|PHAKOSIN beaded filament structural protein 2, phakinin protein-coding 13-PTNLD9-TUMOR_peak_1125 chr1 36574695 36574918 + 2.62230 NA intron (NM_001294347, intron 2 of 3) intron (NM_001294347, intron 2 of 3) 15879 NM_001294347 1296 Hs.353001 NM_005202 HPRD:08347 COL8A2 FECD|FECD1|PPCD|PPCD2 collagen, type VIII, alpha 2 protein-coding 13-PTNLD9-TUMOR_peak_4373 chr1 170526213 170526335 + 2.61746 NA Intergenic Intergenic 25011 NM_152281 92344 Hs.183702 NM_152281 HPRD:12144 GORAB GO|NTKLBP1|SCYL1BP1 golgin, RAB6-interacting protein-coding 13-PTNLD9-TUMOR_peak_33841 chr3 13473066 13473160 + 2.59819 NA Intergenic MER41A|LTR|ERV1 -11294 NM_024923 23225 Hs.475525 NM_024923 HPRD:06368 NUP210 GP210|POM210 nucleoporin 210kDa protein-coding 13-PTNLD9-TUMOR_peak_38243 chr4 41937156 41937315 + 2.54857 NA promoter-TSS (NM_018126) promoter-TSS (NM_018126) 98 NM_018126 55161 Hs.31082 NM_018126 HPRD:07680 TMEM33 1600019D15Rik|SHINC3 transmembrane protein 33 protein-coding 13-PTNLD9-TUMOR_peak_3297 chr1 145293365 145293499 + 2.54857 NA promoter-TSS (NM_001039703) promoter-TSS (NM_001039703) 61 NM_001039703 100132406 Hs.714127 NM_001039703 ENSG00000163386 NBPF10 AB6|AG1|NBPF9 neuroblastoma breakpoint family, member 10 protein-coding 13-PTNLD9-TUMOR_peak_27350 chr2 77980995 77981215 + 2.52653 NA intron (NR_110288, intron 3 of 3) L1PA2|LINE|L1 -161955 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LOC101927926 - uncharacterized LOC101927926 ncRNA 13-PTNLD9-TUMOR_peak_41605 chr5 98829769 98829903 + 2.52653 NA Intergenic L2b|LINE|L2 -39858 NR_110562 102724855 Hs.519477 NR_110562 CTD-2151A2.1 - uncharacterized LOC102724855 ncRNA 13-PTNLD9-TUMOR_peak_37406 chr3 195694044 195694227 + 2.47216 NA intron (NR_003264, intron 14 of 16) intron (NR_003264, intron 14 of 16) 23015 NR_003264 255812 Hs.566872 NR_003264 ENSG00000185485 SDHAP1 SDHAL1|SDHALP1 succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_56363 chrX 112586500 112586594 + 2.46096 NA intron (NR_110399, intron 3 of 3) L1PA2|LINE|L1 300592 NR_110399 101928437 Hs.640112 NR_110399 LOC101928437 - uncharacterized LOC101928437 ncRNA 13-PTNLD9-TUMOR_peak_35863 chr3 129346757 129346914 + 2.44072 NA Intergenic Intergenic -21253 NM_015103 23129 Hs.301685 NM_015103 HPRD:05046 PLXND1 PLEXD1 plexin D1 protein-coding 13-PTNLD9-TUMOR_peak_31661 chr20 55862995 55863089 + 2.42781 NA Intergenic Intergenic -21335 NM_001719 655 Hs.473163 NM_001719 HPRD:00212 BMP7 OP-1 bone morphogenetic protein 7 protein-coding 13-PTNLD9-TUMOR_peak_49373 chr7 140097781 140097875 + 2.41566 NA intron (NM_001287498, intron 1 of 13) intron (NM_001287498, intron 1 of 13) 522 NM_001287498 84255 Hs.446021 NM_032295 HPRD:15381 SLC37A3 - solute carrier family 37, member 3 protein-coding 13-PTNLD9-TUMOR_peak_20744 chr17 26554789 26554923 + 2.40946 NA non-coding (NR_003064, exon 2 of 2) non-coding (NR_003064, exon 2 of 2) 1267 NR_003064 23615 Hs.157195 NM_021093 HPRD:07589 PYY2 - peptide YY, 2 (pseudogene) pseudo 13-PTNLD9-TUMOR_peak_50502 chr8 29413923 29414042 + 2.39658 NA Intergenic Intergenic 191643 NR_026765 619351 Hs.566911 NR_026765 ENSG00000251191 LINC00589 C8orf75 long intergenic non-protein coding RNA 589 ncRNA 13-PTNLD9-TUMOR_peak_55501 chrX 7086590 7086684 + 2.39658 NA Intergenic Intergenic -20406 NM_001135565 8226 Hs.185910 NM_012080 HPRD:02383 HDHD1 DXF68S1E|FAM16AX|GS1|HDHD1A haloacid dehalogenase-like hydrolase domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_16510 chr14 96207705 96207799 + 2.39658 NA Intergenic Intergenic -27219 NR_049726 8115 Hs.2484 NM_021966 HPRD:01744 TCL1A TCL1 T-cell leukemia/lymphoma 1A protein-coding 13-PTNLD9-TUMOR_peak_28311 chr2 122354342 122354463 + 2.39658 NA intron (NM_001142274, intron 2 of 37) intron (NM_001142274, intron 2 of 37) 52650 NM_015282 23332 Hs.469840 NM_015282 HPRD:09322 CLASP1 MAST1 cytoplasmic linker associated protein 1 protein-coding 13-PTNLD9-TUMOR_peak_51536 chr8 106151480 106151591 + 2.39658 NA Intergenic Intergenic -179612 NM_012082 23414 Hs.431009 NM_012082 HPRD:04737 ZFPM2 DIH3|FOG2|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 13-PTNLD9-TUMOR_peak_46907 chr7 12879577 12879671 + 2.39658 NA Intergenic L1PA7|LINE|L1 152713 NM_005738 10124 Hs.245540 NM_005738 HPRD:11987 ARL4A ARL4 ADP-ribosylation factor-like 4A protein-coding 13-PTNLD9-TUMOR_peak_39162 chr4 119478550 119478694 + 2.39658 NA Intergenic MER87B|LTR|ERV1 -34277 NR_109983 729218 Hs.448518 NR_103825 LOC729218 - uncharacterized LOC729218 pseudo 13-PTNLD9-TUMOR_peak_29091 chr2 173172562 173172692 + 2.39658 NA Intergenic Intergenic -119687 NM_000210 3655 Hs.133397 NM_000210 HPRD:00945 ITGA6 CD49f|ITGA6B|VLA-6 integrin, alpha 6 protein-coding 13-PTNLD9-TUMOR_peak_26540 chr2 33830258 33830384 + 2.39658 NA Intergenic L2c|LINE|L2 -5959 NM_015475 25940 Hs.468140 NM_015475 HPRD:16808 FAM98A - family with sequence similarity 98, member A protein-coding 13-PTNLD9-TUMOR_peak_22894 chr18 30442283 30442377 + 2.39658 NA Intergenic L1PA2|LINE|L1 -89356 NM_020805 57565 Hs.446164 NM_020805 HPRD:17238 KLHL14 - kelch-like family member 14 protein-coding 13-PTNLD9-TUMOR_peak_10470 chr11 69920231 69920325 + 2.39658 NA intron (NR_103835, intron 2 of 2) intron (NR_103835, intron 2 of 2) 1176 NR_103835 100009613 Hs.131238 NR_103835 ANO1-AS2 C11orf78|NCRNA00224 ANO1 antisense RNA 2 (head to head) ncRNA 13-PTNLD9-TUMOR_peak_23720 chr19 4375454 4375565 + 2.39658 NA intron (NM_001199944, intron 1 of 9) intron (NM_001199944, intron 1 of 9) 24906 NM_001199944 6455 Hs.97616 NM_003025 HPRD:03462 SH3GL1 CNSA1|EEN|SH3D2B|SH3P8 SH3-domain GRB2-like 1 protein-coding 13-PTNLD9-TUMOR_peak_54926 chr9 133431619 133431794 + 2.39658 NA Intergenic MLT1G3|LTR|ERVL-MaLR 23175 NR_027440 100272217 Hs.601255 NR_027440 LOC100272217 - uncharacterized LOC100272217 ncRNA 13-PTNLD9-TUMOR_peak_41718 chr5 110479760 110479854 + 2.39658 NA Intergenic L1MEg2|LINE|L1 51937 NM_139281 134430 Hs.533237 NM_139281 HPRD:10305 WDR36 GLC1G|TA-WDRP|TAWDRP|UTP21 WD repeat domain 36 protein-coding 13-PTNLD9-TUMOR_peak_23781 chr19 6460280 6460430 + 2.39658 NA promoter-TSS (NM_024103) promoter-TSS (NM_024103) -574 NM_024103 79085 Hs.356231 NM_024103 HPRD:16381 SLC25A23 APC2|MCSC2|SCaMC-3 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23 protein-coding 13-PTNLD9-TUMOR_peak_5033 chr1 202489423 202489541 + 2.39658 NA intron (NM_002481, intron 18 of 23) intron (NM_002481, intron 18 of 23) -19760 NM_001197131 4660 Hs.444403 NM_002481 HPRD:04794 PPP1R12B MYPT2|PP1bp55 protein phosphatase 1, regulatory subunit 12B protein-coding 13-PTNLD9-TUMOR_peak_31781 chr20 61354748 61354870 + 2.39658 NA intron (NM_002531, intron 1 of 3) intron (NM_002531, intron 1 of 3) 14620 NM_002531 4923 Hs.590869 NM_002531 HPRD:01218 NTSR1 NTR neurotensin receptor 1 (high affinity) protein-coding 13-PTNLD9-TUMOR_peak_13457 chr12 89919891 89920003 + 2.39658 NA promoter-TSS (NM_001199777) promoter-TSS (NM_001199777) 92 NM_001199781 100528030 Hs.25130 NM_001199781 ENSG00000259075 POC1B-GALNT4 - POC1B-GALNT4 readthrough protein-coding 13-PTNLD9-TUMOR_peak_40567 chr5 33612647 33612741 + 2.39658 NA intron (NM_030955, intron 16 of 23) intron (NM_030955, intron 16 of 23) 171812 NR_047677 6897 Hs.481860 NM_152295 HPRD:01762 TARS ThrRS threonyl-tRNA synthetase protein-coding 13-PTNLD9-TUMOR_peak_40673 chr5 39256782 39256932 + 2.39658 NA intron (NM_001243093, intron 1 of 18) intron (NM_001243093, intron 1 of 18) 13902 NM_001243093 2533 Hs.370503 NM_001465 HPRD:04107 FYB ADAP|PRO0823|SLAP-130 FYN binding protein protein-coding 13-PTNLD9-TUMOR_peak_7800 chr10 77717144 77717299 + 2.39658 NA intron (NM_032024, intron 1 of 5) intron (NM_032024, intron 1 of 5) 174702 NM_032024 83938 Hs.118161 NM_032024 HPRD:12560 C10orf11 OCA5|OCA7 chromosome 10 open reading frame 11 protein-coding 13-PTNLD9-TUMOR_peak_28839 chr2 159343607 159343734 + 2.39658 NA intron (NM_001005476, intron 1 of 20) intron (NM_001005476, intron 1 of 20) 30194 NM_001005476 8502 Hs.407580 NM_003628 HPRD:05043 PKP4 p0071 plakophilin 4 protein-coding 13-PTNLD9-TUMOR_peak_46035 chr6 127038410 127038552 + 2.39658 NA Intergenic Intergenic 377546 NM_001286525 387103 Hs.486401 NM_001012507 HPRD:16660 CENPW C6orf173|CENP-W|CUG2 centromere protein W protein-coding 13-PTNLD9-TUMOR_peak_44146 chr6 24817384 24817478 + 2.37961 NA intron (NM_001286445, intron 20 of 21) L1HS|LINE|L1 -18307 NM_001282492 101928603 Hs.635133 NM_001282492 C6orf229 - chromosome 6 open reading frame 229 protein-coding 13-PTNLD9-TUMOR_peak_32979 chr22 25362390 25362484 + 2.37011 NA Intergenic Intergenic -27123 NM_001001663 255349 Hs.329040 NM_001001663 HPRD:17327 TMEM211 bA9F11.1 transmembrane protein 211 protein-coding 13-PTNLD9-TUMOR_peak_26631 chr2 38666194 38666288 + 2.36423 NA Intergenic L2b|LINE|L2 -61809 NR_024191 64225 Hs.727652 NM_022374 HPRD:10662 ATL2 ARL3IP2|ARL6IP2|atlastin2 atlastin GTPase 2 protein-coding 13-PTNLD9-TUMOR_peak_34673 chr3 53032811 53032973 + 2.36423 NA intron (NM_016329, intron 1 of 20) CpG 47197 NM_016329 51460 Hs.343679 NM_016329 HPRD:09539 SFMBT1 RU1|SFMBT|hSFMBT Scm-like with four mbt domains 1 protein-coding 13-PTNLD9-TUMOR_peak_22211 chr17 77962093 77962207 + 2.36105 NA intron (NM_019020, intron 3 of 11) intron (NM_019020, intron 3 of 11) -37494 NM_001271846 125058 Hs.369819 NM_019020 HPRD:10261 TBC1D16 - TBC1 domain family, member 16 protein-coding 13-PTNLD9-TUMOR_peak_23630 chr19 1592838 1592964 + 2.28716 NA promoter-TSS (NM_001281453) promoter-TSS (NM_001281453) -141 NM_001281453 53615 Hs.178728 NM_003926 HPRD:04653 MBD3 - methyl-CpG binding domain protein 3 protein-coding 13-PTNLD9-TUMOR_peak_1359 chr1 41885066 41885201 + 2.27251 NA Intergenic Intergenic 57530 NM_001291281 100132074 Hs.559677 NM_001291281 ENSG00000204060 FOXO6 - forkhead box O6 protein-coding 13-PTNLD9-TUMOR_peak_32389 chr21 43021872 43021966 + 2.26885 NA Intergenic MIR3|SINE|MIR -77543 NR_024367 54090 Hs.570442 NR_024367 LINC00111 C21orf21|NCRNA00111 long intergenic non-protein coding RNA 111 ncRNA 13-PTNLD9-TUMOR_peak_15583 chr14 37591624 37591718 + 2.22437 NA intron (NM_030631, intron 1 of 9) L2b|LINE|L2 -49560 NR_033240 100129794 Hs.601579 NR_033240 ENSG00000258708 SLC25A21-AS1 - SLC25A21 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_11881 chr12 4618609 4618769 + 2.22437 NA intron (NM_020374, intron 9 of 13) L1PA2|LINE|L1 28948 NM_020374 57102 Hs.302977 NM_020374 HPRD:12609 C12orf4 - chromosome 12 open reading frame 4 protein-coding 13-PTNLD9-TUMOR_peak_56411 chrX 118637508 118637645 + 2.20230 NA Intergenic Intergenic -34493 NR_028443 100303728 Hs.714405 NR_028443 ENSG00000224281 SLC25A5-AS1 - SLC25A5 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_46358 chr6 154831850 154832015 + 2.18028 NA promoter-TSS (NM_173515) promoter-TSS (NM_173515) -179 NM_173515 154043 Hs.16064 NM_173515 CNKSR3 MAGI1 CNKSR family member 3 protein-coding 13-PTNLD9-TUMOR_peak_20585 chr17 18280976 18281113 + 2.18028 NA promoter-TSS (NM_001145127) promoter-TSS (NM_001145127) -35 NM_001145127 645027 Hs.462400 NM_001145127 ENSG00000214860 EVPLL - envoplakin-like protein-coding 13-PTNLD9-TUMOR_peak_5593 chr1 224759895 224760032 + 2.18028 NA Intergenic AluSx|SINE|Alu -44216 NM_152495 149111 Hs.731723 NM_152495 HPRD:08799 CNIH3 CNIH-3 cornichon family AMPA receptor auxiliary protein 3 protein-coding 13-PTNLD9-TUMOR_peak_36870 chr3 179041260 179041431 + 2.16234 NA promoter-TSS (NM_016331) promoter-TSS (NM_016331) -206 NM_016331 51193 Hs.632578 NM_016331 HPRD:15882 ZNF639 6230400O18Rik|ANC-2H01|ANC_2H01|ZASC1 zinc finger protein 639 protein-coding 13-PTNLD9-TUMOR_peak_29682 chr2 208474903 208475038 + 2.14106 NA 3' UTR (NM_001127395, exon 4 of 4) 3' UTR (NM_001127395, exon 4 of 4) 14726 NM_145280 151194 Hs.664764 NM_145280 HPRD:14090 METTL21A FAM119A|HCA557b|HSPA-KMT methyltransferase like 21A protein-coding 13-PTNLD9-TUMOR_peak_4707 chr1 183339724 183339818 + 2.13752 NA intron (NM_015039, intron 1 of 10) intron (NM_015039, intron 1 of 10) 47863 NM_015039 23057 Hs.497123 NM_015039 HPRD:09786 NMNAT2 C1orf15|PNAT2 nicotinamide nucleotide adenylyltransferase 2 protein-coding 13-PTNLD9-TUMOR_peak_4009 chr1 158007700 158007851 + 2.12021 NA intron (NM_001286349, intron 1 of 12) intron (NM_001286349, intron 1 of 12) 44712 NM_018240 55243 Hs.272234 NM_018240 HPRD:06306 KIRREL NEPH1 kin of IRRE like (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_47007 chr7 20824601 20824700 + 2.12021 NA exon (NM_182700, exon 2 of 2) exon (NM_182700, exon 2 of 2) 1858 NM_198956 221833 Hs.195922 NM_182700 SP8 BTD Sp8 transcription factor protein-coding 13-PTNLD9-TUMOR_peak_46627 chr7 304806 304924 + 2.10832 NA Intergenic Intergenic -25271 NM_001195127 100288524 Hs.702860 NM_001195127 WI2-2373I1.2 - forkhead box L1-like protein-coding 13-PTNLD9-TUMOR_peak_8243 chr10 105001510 105001639 + 2.05287 NA Intergenic Intergenic -4070 NM_001143909 729020 Hs.458437 NM_001143909 ENSG00000235376 RPEL1 - ribulose-5-phosphate-3-epimerase-like 1 protein-coding 13-PTNLD9-TUMOR_peak_53728 chr9 81154953 81155070 + 2.05287 NA Intergenic Intergenic 243020 NM_021154 29968 Hs.494261 NM_021154 HPRD:17918 PSAT1 EPIP|PSA|PSAT phosphoserine aminotransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_35905 chr3 130560359 130560479 + 2.03231 NA Intergenic Intergenic -8950 NM_001199182 27032 Hs.584884 NM_014382 HPRD:05089 ATP2C1 ATP2C1A|BCPM|HHD|PMR1|SPCA1|hSPCA1 ATPase, Ca++ transporting, type 2C, member 1 protein-coding 13-PTNLD9-TUMOR_peak_32947 chr22 24551823 24551942 + 2.01831 NA intron (NM_012295, intron 29 of 36) CpG -25562 NM_019601 56241 Hs.131819 NM_019601 HPRD:18132 SUSD2 BK65A6.2 sushi domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_38946 chr4 100394352 100394484 + 2.01212 NA Intergenic MSTD-int|LTR|ERVL-MaLR -37743 NM_032149 84103 Hs.97501 NM_032149 HPRD:12825 C4orf17 - chromosome 4 open reading frame 17 protein-coding 13-PTNLD9-TUMOR_peak_38980 chr4 103352391 103352498 + 2.01212 NA Intergenic AluY|SINE|Alu -70042 NM_003998 4790 Hs.618430 NM_003998 HPRD:01238 NFKB1 EBP-1|KBF1|NF-kB1|NF-kappa-B|NF-kappaB|NFKB-p105|NFKB-p50|NFkappaB|p105|p50 nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 protein-coding 13-PTNLD9-TUMOR_peak_52685 chr9 5438401 5438522 + 2.01134 NA promoter-TSS (NM_018465) promoter-TSS (NM_018465) -524 NM_018465 55848 Hs.584242 NM_018465 HPRD:12961 PLGRKT C9orf46|MDS030|PLG-RKT|Plg-R(KT) plasminogen receptor, C-terminal lysine transmembrane protein protein-coding Done annotating peaks file