Peak file = 0111.bed Genome = hg19 Organism = human Peak/BED file conversion summary: BED/Header formatted lines: 348 peakfile formatted lines: 0 Duplicated Peak IDs: 0 Peak File Statistics: Total Peaks: 348 Redundant Peak IDs: 0 Peaks lacking information: 0 (need at least 5 columns per peak) Peaks with misformatted coordinates: 0 (should be integer) Peaks with misformatted strand: 0 (should be either +/- or 0/1) Peak file looks good! Reading Positions... ----------------------- Finding Closest TSS... Annotating:........................ Annotation Number of peaks Total size (bp) Log2 Enrichment 3UTR 0.0 21942417 -8.430 miRNA 0.0 48690 -8.430 ncRNA 3.0 5144737 2.386 TTS 2.0 28099294 -0.648 pseudo 3.0 1853996 3.859 Exon 15.0 34376117 1.968 Intron 59.0 1194604745 -1.175 Intergenic 102.0 1772914566 -0.955 Promoter 147.0 31334283 5.394 5UTR 14.0 2504844 5.647 snoRNA 0.0 119 -8.430 snRNA 0.0 105 -8.430 NOTE: If this part takes more than 2 minutes, there is a good chance your machine ran out of memory: consider hitting ctrl+C and rerunning the command with "-noann" To capture annotation stats in a file, use "-annStats " next time Annotating:.......................... Annotation Number of peaks Total size (bp) Log2 Enrichment 3UTR 0.0 21942417 -8.443 Other 9.0 3960244 4.337 Unknown? 0.0 18108 -8.443 RNA 0.0 115354 -8.443 miRNA 0.0 48690 -8.443 ncRNA 3.0 5144737 2.375 TTS 2.0 28099294 -0.659 LINE 21.0 624793252 -1.742 LINE? 0.0 10448 -8.443 srpRNA 0.0 254817 -8.443 SINE 3.0 381077708 -3.836 RC 0.0 443678 -8.443 tRNA 0.0 92966 -8.443 DNA? 0.0 265124 -8.443 pseudo 3.0 1853996 3.847 DNA 0.0 96191113 -8.443 Exon 15.0 34376117 1.957 Intron 21.0 634266076 -1.764 Intergenic 32.0 903878923 -1.667 Promoter 147.0 31334283 5.383 5UTR 14.0 2504844 5.636 snoRNA 0.0 119 -8.443 LTR? 0.0 21177 -8.443 scRNA 0.0 116795 -8.443 CpG-Island 35.0 9354379 5.057 Low_complexity 3.0 15505394 0.783 LTR 13.0 260460606 -1.172 Simple_repeat 13.0 24938322 2.213 snRNA 0.0 322859 -8.443 Unknown 0.0 1252510 -8.443 SINE? 0.0 43068 -8.443 Satellite 14.0 12579225 3.307 rRNA 0.0 164735 -8.443 Counting Tags in Peaks from each directory... Organism: human Loading Gene Informaiton... Outputing Annotation File... PeakID (cmd=annotatePeaks.pl 0111.bed hg19) Chr Start End Strand Peak Score Focus Ratio/Region Size Annotation Detailed Annotation Distance to TSS Nearest PromoterID Entrez ID Nearest Unigene Nearest Refseq Nearest Ensembl Gene Name Gene Alias Gene Description Gene Type 13-PTNLD9-TUMOR_peak_44444 chr6 30312827 30313214 + 27.51759 NA intron (NM_024839, intron 1 of 4).6 CpG 114 NM_001199121 79897 Hs.183232 NM_024839 HPRD:15275 RPP21 C6orf135|CAT60 ribonuclease P/MRP 21kDa subunit protein-coding 13-PTNLD9-TUMOR_peak_20767 chr17 27139493 27139656 + 27.14068 NA promoter-TSS (NM_001288634) promoter-TSS (NM_001288634) -121 NM_001288634 55731 Hs.564533 NM_018182 HPRD:07693 FAM222B C17orf63 family with sequence similarity 222, member B protein-coding 13-PTNLD9-TUMOR_peak_51938 chr8 127387614 127388064 + 26.71528 NA Intergenic MER68|LTR|ERVL 50099 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 13-PTNLD9-TUMOR_peak_57045 chrY 58880304 58880421 + 25.02349 NA Intergenic (CATTC)n|Satellite|Satellite -220095 NM_005840 10251 Hs.381912 NM_005840 HPRD:03917 SPRY3 HSPRY3|spry-3 sprouty homolog 3 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_36213 chr3 141594819 141595053 + 24.86930 NA promoter-TSS (NM_001679) promoter-TSS (NM_001679) -534 NM_001679 483 Hs.477789 NM_001679 HPRD:03521 ATP1B3 ATPB-3|CD298 ATPase, Na+/K+ transporting, beta 3 polypeptide protein-coding 13-PTNLD9-TUMOR_peak_45042 chr6 42701975 42702178 + 23.84821 NA Intergenic LTR13A|LTR|ERVK 6762 NR_037141 442211 Hs.563394 NR_037141 ATP6V0CP3 - ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c pseudogene 3 pseudo 13-PTNLD9-TUMOR_peak_49573 chr7 148930964 148931183 + 23.58363 NA Intergenic Intergenic -5669 NM_012256 7988 Hs.490510 NM_012256 HPRD:03859 ZNF212 C2H2-150|ZNF182|ZNFC150 zinc finger protein 212 protein-coding 13-PTNLD9-TUMOR_peak_55570 chrX 15353563 15353951 + 23.47937 NA promoter-TSS (NM_002641) promoter-TSS (NM_002641) -81 NR_033836 5277 Hs.137154 NM_002641 HPRD:02410 PIGA GPI3|MCAHS2|PIG-A|PNH1 phosphatidylinositol glycan anchor biosynthesis, class A protein-coding 13-PTNLD9-TUMOR_peak_35495 chr3 119187675 119188031 + 23.42227 NA promoter-TSS (NM_152305) promoter-TSS (NM_152305) 68 NR_024265 56983 Hs.231750 NM_152305 HPRD:17475 POGLUT1 C3orf9|CLP46|KDELCL1|KTELC1|MDSRP|Rumi|hCLP46 protein O-glucosyltransferase 1 protein-coding 13-PTNLD9-TUMOR_peak_5786 chr1 230240500 230241009 + 23.29736 NA intron (NM_004481, intron 1 of 15) intron (NM_004481, intron 1 of 15) 37812 NM_004481 2590 Hs.743964 NM_004481 HPRD:03782 GALNT2 GalNAc-T2 polypeptide N-acetylgalactosaminyltransferase 2 protein-coding 13-PTNLD9-TUMOR_peak_57046 chrY 58887386 58887504 + 22.33934 NA Intergenic (CATTC)n|Satellite|Satellite -213012 NM_005840 10251 Hs.381912 NM_005840 HPRD:03917 SPRY3 HSPRY3|spry-3 sprouty homolog 3 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_41839 chr5 118788055 118788558 + 22.30723 NA exon (NM_001199292, exon 1 of 23) exon (NM_001199292, exon 1 of 23) 114 NM_001199291 3295 Hs.406861 NM_000414 HPRD:03514 HSD17B4 DBP|MFE-2|MPF-2|PRLTS1|SDR8C1 hydroxysteroid (17-beta) dehydrogenase 4 protein-coding 13-PTNLD9-TUMOR_peak_455 chr1 12538181 12538593 + 21.78636 NA intron (NM_015378, intron 67 of 69) intron (NM_015378, intron 67 of 69) -28913 NR_003025 677885 Hs.658450 NR_003025 SNORA59A ACA59 small nucleolar RNA, H/ACA box 59A snoRNA 13-PTNLD9-TUMOR_peak_45873 chr6 109571893 109572032 + 21.48928 NA intron (NM_001277339, intron 3 of 9) L1PA2|LINE|L1 14145 NM_001277339 100996634 NM_001277339 LOC100996634 - transmembrane protein FLJ37396 protein-coding 13-PTNLD9-TUMOR_peak_46198 chr6 144164315 144164507 + 21.41876 NA promoter-TSS (NM_032860) promoter-TSS (NM_032860) -97 NM_032860 84946 Hs.185675 NM_032860 HPRD:12906 LTV1 C6orf93|dJ468K18.4 LTV1 ribosome biogenesis factor protein-coding 13-PTNLD9-TUMOR_peak_3151 chr1 121426745 121426868 + 20.68841 NA Intergenic ALR/Alpha|Satellite|centr 165896 NR_003955 647121 Hs.697682 NR_003955 EMBP1 - embigin pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_7216 chr10 46564939 46565123 + 20.43760 NA exon (NM_001042360, exon 3 of 5) exon (NM_001042360, exon 3 of 5) 55027 NM_001042357 26095 Hs.440733 NM_015605 HPRD:10898 PTPN20B CT126|PTPN20A|bA142I17.1|bA42B19.1|hPTPN20 protein tyrosine phosphatase, non-receptor type 20B protein-coding 13-PTNLD9-TUMOR_peak_7295 chr10 48751832 48752022 + 20.14194 NA exon (NM_001042363, exon 8 of 10) exon (NM_001042363, exon 8 of 10) 55058 NM_001042357 26095 Hs.440733 NM_015605 HPRD:10898 PTPN20B CT126|PTPN20A|bA142I17.1|bA42B19.1|hPTPN20 protein tyrosine phosphatase, non-receptor type 20B protein-coding 13-PTNLD9-TUMOR_peak_48260 chr7 90032660 90032886 + 20.07237 NA 5' UTR (NM_001185073, exon 1 of 3) 5' UTR (NM_001185073, exon 1 of 3) 125 NM_012129 9069 Hs.731917 NM_012129 HPRD:13064 CLDN12 - claudin 12 protein-coding 13-PTNLD9-TUMOR_peak_7307 chr10 49272371 49272561 + 19.92565 NA Intergenic Intergenic -32808 NR_029396 414224 Hs.645213 NR_029396 ENSG00000179296 CTGLF12P - centaurin, gamma-like family, member 12 pseudogene pseudo 13-PTNLD9-TUMOR_peak_32257 chr21 37513866 37514170 + 19.85515 NA non-coding (NR_038894, exon 3 of 3) non-coding (NR_038894, exon 3 of 3) 6755 NM_001236 874 Hs.154510 NM_001236 HPRD:07222 CBR3 HEL-S-25|SDR21C2|hCBR3 carbonyl reductase 3 protein-coding 13-PTNLD9-TUMOR_peak_33052 chr22 29196503 29196701 + 19.60206 NA promoter-TSS (NM_005080) promoter-TSS (NM_005080) -42 NM_005080 7494 Hs.437638 NM_005080 HPRD:01908 XBP1 TREB5|XBP-1|XBP2 X-box binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_20918 chr17 35306171 35306348 + 19.51088 NA promoter-TSS (NM_012138) promoter-TSS (NM_012138) 84 NM_012138 26574 Hs.195740 NM_012138 HPRD:12236 AATF BFR2|CHE-1|CHE1|DED apoptosis antagonizing transcription factor protein-coding 13-PTNLD9-TUMOR_peak_50245 chr8 21704364 21704669 + 19.08181 NA Intergenic MER52D|LTR|ERV1 -58170 NM_001165038 2675 Hs.441202 NM_001495 HPRD:11801 GFRA2 GDNFRB|NRTNR-ALPHA|NTNRA|RETL2|TRNR2 GDNF family receptor alpha 2 protein-coding 13-PTNLD9-TUMOR_peak_10959 chr11 94884632 94884900 + 18.97835 NA non-coding (NR_110303, exon 1 of 3) non-coding (NR_110303, exon 1 of 3) 1063 NR_110303 101929295 Hs.735838 NR_110303 ENSG00000245552 LOC101929295 - uncharacterized LOC101929295 ncRNA 13-PTNLD9-TUMOR_peak_54901 chr9 132404376 132404736 + 18.72493 NA promoter-TSS (NM_017873) promoter-TSS (NM_017873) -108 NM_017873 140459 Hs.125037 NM_017873 ASB6 - ankyrin repeat and SOCS box containing 6 protein-coding 13-PTNLD9-TUMOR_peak_17659 chr15 74890706 74890915 + 18.66187 NA TTS (NM_006465) TTS (NM_006465) -9903 NM_003992 1198 Hs.584748 NM_001292 HPRD:04290 CLK3 PHCLK3|PHCLK3/152 CDC-like kinase 3 protein-coding 13-PTNLD9-TUMOR_peak_49240 chr7 135541548 135542132 + 18.62573 NA Intergenic MER52D|LTR|ERV1 -108246 NM_205855 389558 Hs.55200 NM_205855 HPRD:15613 FAM180A UNQ1940 family with sequence similarity 180, member A protein-coding 13-PTNLD9-TUMOR_peak_36283 chr3 146187091 146187379 + 18.46256 NA promoter-TSS (NM_001199978) promoter-TSS (NM_001199978) -147 NM_001199978 57047 Hs.744414 NM_020359 HPRD:09621 PLSCR2 - phospholipid scramblase 2 protein-coding 13-PTNLD9-TUMOR_peak_39756 chr4 159131244 159131787 + 17.95175 NA 5' UTR (NM_018342, exon 1 of 13) 5' UTR (NM_018342, exon 1 of 13) 114 NM_018342 55314 Hs.176227 NM_018342 HPRD:07736 TMEM144 - transmembrane protein 144 protein-coding 13-PTNLD9-TUMOR_peak_8685 chr10 135186840 135187032 + 17.65157 NA promoter-TSS (NM_004092) promoter-TSS (NM_004092) -28 NM_004092 1892 Hs.76394 NM_004092 HPRD:03799 ECHS1 SCEH enoyl CoA hydratase, short chain, 1, mitochondrial protein-coding 13-PTNLD9-TUMOR_peak_53016 chr9 33139521 33139704 + 17.63233 NA intron (NM_001497, intron 1 of 5) intron (NM_001497, intron 1 of 5) -27334 NR_108110 101929639 Hs.545818 NR_108108 B4GALT1-AS1 - B4GALT1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_11736 chr11 134526513 134526945 + 17.38327 NA Intergenic Intergenic 220353 NR_033852 283177 Hs.504390 NR_033852 LOC283177 - uncharacterized LOC283177 ncRNA 13-PTNLD9-TUMOR_peak_26141 chr2 11809921 11810205 + 17.28058 NA exon (NM_012344, exon 1 of 4) exon (NM_012344, exon 1 of 4) 266 NM_012344 23620 Hs.131138 NM_012344 HPRD:05704 NTSR2 NTR2 neurotensin receptor 2 protein-coding 13-PTNLD9-TUMOR_peak_41540 chr5 93954023 93954724 + 17.22941 NA promoter-TSS (NM_032290) promoter-TSS (NM_032290) -18 NM_032290 84250 Hs.657315 NM_032290 HPRD:08538 ANKRD32 BRCTD1|BRCTx ankyrin repeat domain 32 protein-coding 13-PTNLD9-TUMOR_peak_16468 chr14 93214946 93215109 + 17.02117 NA promoter-TSS (NM_005606) promoter-TSS (NM_005606) 20 NM_001008530 5641 Hs.18069 NM_005606 HPRD:04017 LGMN AEP|LGMN1|PRSC1 legumain protein-coding 13-PTNLD9-TUMOR_peak_7006 chr10 38880912 38881068 + 16.90901 NA Intergenic HSATII|Satellite|Satellite -108737 NR_045000 399746 Hs.742607 NR_045000 ENSG00000227264 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 13-PTNLD9-TUMOR_peak_50885 chr8 48920884 48921031 + 16.78826 NA promoter-TSS (NM_003350) promoter-TSS (NM_003350) -38 NM_003350 7336 Hs.491695 NM_003350 UBE2V2 DDVIT1|DDVit-1|EDAF-1|EDPF-1|EDPF1|MMS2|UEV-2|UEV2 ubiquitin-conjugating enzyme E2 variant 2 protein-coding 13-PTNLD9-TUMOR_peak_26748 chr2 44223364 44223579 + 16.78826 NA promoter-TSS (NM_133259) promoter-TSS (NM_133259) -327 NM_133259 10128 Hs.368084 NM_133259 HPRD:06343 LRPPRC CLONE-23970|GP130|LRP130|LSFC leucine-rich pentatricopeptide repeat containing protein-coding 13-PTNLD9-TUMOR_peak_52391 chr8 143808144 143808873 + 16.65327 NA promoter-TSS (NR_038925) promoter-TSS (NR_038925) -113 NM_016647 51337 Hs.368402 NM_016647 HPRD:14241 THEM6 C8orf55|DSCD75 thioesterase superfamily member 6 protein-coding 13-PTNLD9-TUMOR_peak_8433 chr10 119806136 119806571 + 15.88560 NA promoter-TSS (NM_014904) promoter-TSS (NM_014904) 21 NR_026939 255082 Hs.89387 NM_178816 HPRD:12266 CASC2 C10orf5 cancer susceptibility candidate 2 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_41059 chr5 64920066 64920303 + 15.79391 NA promoter-TSS (NM_001093756) promoter-TSS (NM_001093756) 3 NM_033228 373 Hs.792 NM_001656 HPRD:03449 TRIM23 ARD1|ARFD1|RNF46 tripartite motif containing 23 protein-coding 13-PTNLD9-TUMOR_peak_24447 chr19 19281069 19281218 + 15.77153 NA promoter-TSS (NM_001145785) promoter-TSS (NM_001145785) -45 NM_001145785 100271849 Hs.153629 NM_001145785 ENSG00000064489 MEF2B RSRFR2 myocyte enhancer factor 2B protein-coding 13-PTNLD9-TUMOR_peak_53827 chr9 87283240 87283430 + 15.64857 NA promoter-TSS (NM_001291937) promoter-TSS (NM_001291937) -38 NM_001291937 4915 Hs.494312 NM_006180 HPRD:02712 NTRK2 GP145-TrkB|TRKB|trk-B neurotrophic tyrosine kinase, receptor, type 2 protein-coding 13-PTNLD9-TUMOR_peak_36603 chr3 160822415 160823101 + 15.52394 NA promoter-TSS (NM_033169) promoter-TSS (NM_033169) -75 NM_033169 8706 Hs.418062 NM_003781 HPRD:09119 B3GALNT1 B3GALT3|GLCT3|GLOB|Gb4Cer|P|P1|beta3Gal-T3|galT3 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) protein-coding 13-PTNLD9-TUMOR_peak_31391 chr20 48531951 48532478 + 15.47376 NA promoter-TSS (NM_006038) promoter-TSS (NM_006038) -134 NM_006038 9825 Hs.48513 NM_006038 HPRD:09636 SPATA2 PD1|PPP1R145|tamo spermatogenesis associated 2 protein-coding 13-PTNLD9-TUMOR_peak_3060 chr1 119395382 119395547 + 15.31584 NA Intergenic L1HS|LINE|L1 136715 NM_152380 6913 Hs.146196 NM_152380 HPRD:16035 TBX15 TBX14 T-box 15 protein-coding 13-PTNLD9-TUMOR_peak_39144 chr4 117847064 117847511 + 15.20462 NA Intergenic CpG 159449 NM_152402 133022 Hs.570737 NM_152402 HPRD:11643 TRAM1L1 - translocation associated membrane protein 1-like 1 protein-coding 13-PTNLD9-TUMOR_peak_7017 chr10 39088294 39088422 + 15.20383 NA Intergenic (CATTC)n|Satellite|Satellite 98631 NR_045000 399746 Hs.742607 NR_045000 ENSG00000227264 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 13-PTNLD9-TUMOR_peak_34270 chr3 38125906 38126059 + 15.04893 NA intron (NM_007337, intron 7 of 35) (TAG)n|Simple_repeat|Simple_repeat 45286 NM_007337 9940 Hs.714499 NM_007335 HPRD:07234 DLEC1 CFAP81|DLC1|F56 deleted in lung and esophageal cancer 1 protein-coding 13-PTNLD9-TUMOR_peak_1002 chr1 33116094 33116294 + 15.02689 NA promoter-TSS (NM_178547) promoter-TSS (NM_178547) -9 NM_178547 339487 Hs.655921 NM_178547 ZBTB8OS ARCH|ARCH2 zinc finger and BTB domain containing 8 opposite strand protein-coding 13-PTNLD9-TUMOR_peak_9037 chr11 10562644 10563015 + 15.00634 NA promoter-TSS (NR_046375) promoter-TSS (NR_046375) 46 NR_034093 100129827 Hs.246769 NR_034093 ENSG00000177112 MRVI1-AS1 - MRVI1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_29086 chr2 173057522 173057686 + 14.86784 NA Intergenic L1PA3|LINE|L1 -90126 NM_004405 1746 Hs.419 NM_004405 HPRD:00527 DLX2 TES-1|TES1 distal-less homeobox 2 protein-coding 13-PTNLD9-TUMOR_peak_49607 chr7 149917665 149918148 + 14.56951 NA Intergenic CpG 82163 NM_001164459 653857 Hs.664579 NM_001164458 ENSG00000106526 ACTR3C ARP11 ARP3 actin-related protein 3 homolog C (yeast) protein-coding 13-PTNLD9-TUMOR_peak_35418 chr3 113557570 113557731 + 14.54642 NA promoter-TSS (NM_017577) promoter-TSS (NM_017577) -31 NM_017577 54762 Hs.24583 NM_017577 ENSG00000178075 GRAMD1C - GRAM domain containing 1C protein-coding 13-PTNLD9-TUMOR_peak_31467 chr20 49411315 49411635 + 14.52199 NA promoter-TSS (NM_198799) promoter-TSS (NM_198799) 44 NM_001010974 55653 Hs.381178 NM_017843 HPRD:06314 BCAS4 CNOL breast carcinoma amplified sequence 4 protein-coding 13-PTNLD9-TUMOR_peak_26851 chr2 47299246 47299547 + 14.25136 NA intron (NM_001288955, intron 18 of 18) intron (NM_001288955, intron 18 of 18) 83121 NM_173649 285051 Hs.531575 NM_173649 HPRD:08273 C2orf61 - chromosome 2 open reading frame 61 protein-coding 13-PTNLD9-TUMOR_peak_38073 chr4 20701799 20702289 + 14.13984 NA promoter-TSS (NM_001258346) promoter-TSS (NM_001258346) 8 NM_001258346 133015 Hs.479298 NM_145048 HPRD:14537 PACRGL C4orf28 PARK2 co-regulated-like protein-coding 13-PTNLD9-TUMOR_peak_29112 chr2 174219533 174219738 + 14.02951 NA promoter-TSS (NM_031942) promoter-TSS (NM_031942) 74 NM_145810 83879 Hs.470654 NM_031942 HPRD:09874 CDCA7 JPO1 cell division cycle associated 7 protein-coding 13-PTNLD9-TUMOR_peak_34314 chr3 40498712 40498883 + 13.92901 NA promoter-TSS (NM_003973) promoter-TSS (NM_003973) 14 NM_003973 9045 Hs.446522 NM_003973 HPRD:10617 RPL14 CAG-ISL-7|CTG-B33|L14|RL14|hRL14 ribosomal protein L14 protein-coding 13-PTNLD9-TUMOR_peak_933 chr1 31627575 31627780 + 13.91401 NA Intergenic Intergenic 85057 NM_024522 79570 Hs.470259 NM_024522 HPRD:07786 NKAIN1 FAM77C Na+/K+ transporting ATPase interacting 1 protein-coding 13-PTNLD9-TUMOR_peak_52474 chr8 145002572 145002841 + 13.87269 NA intron (NM_201383, intron 25 of 31) intron (NM_201383, intron 25 of 31) 11052 NM_201384 5339 Hs.434248 NM_000445 HPRD:03180 PLEC EBS1|EBSO|HD1|LGMD2Q|PCN|PLEC1|PLEC1b|PLTN plectin protein-coding 13-PTNLD9-TUMOR_peak_47062 chr7 23374179 23374523 + 13.87149 NA intron (NM_006547, intron 10 of 14) intron (NM_006547, intron 10 of 14) 35411 NM_138446 115416 Hs.87385 NM_138446 MALSU1 C7orf30|mtRsfA mitochondrial assembly of ribosomal large subunit 1 protein-coding 13-PTNLD9-TUMOR_peak_49888 chr7 158791062 158791225 + 13.81094 NA Intergenic Intergenic -9902 NR_024394 154822 Hs.544783 NM_198345 ENSG00000231419 LINC00689 - long intergenic non-protein coding RNA 689 ncRNA 13-PTNLD9-TUMOR_peak_16048 chr14 65569504 65569887 + 13.80704 NA promoter-TSS (NM_145112) promoter-TSS (NM_145112) -282 NR_073137 4149 Hs.285354 NM_002382 HPRD:01113 MAX bHLHd4 MYC associated factor X protein-coding 13-PTNLD9-TUMOR_peak_6141 chr1 245319732 245320050 + 13.78724 NA exon (NM_018012, exon 2 of 15) exon (NM_018012, exon 2 of 15) 1604 NM_018012 55083 Hs.368096 NM_018012 ENSG00000162849 KIF26B - kinesin family member 26B protein-coding 13-PTNLD9-TUMOR_peak_28111 chr2 113484335 113484533 + 13.78724 NA Intergenic Intergenic 37820 NM_152515 150468 Hs.434250 NM_152515 CKAP2L - cytoskeleton associated protein 2-like protein-coding 13-PTNLD9-TUMOR_peak_7205 chr10 45914903 45915301 + 13.77157 NA intron (NM_001256153, intron 4 of 13) AluJb|SINE|Alu 33467 NR_120674 102724323 Hs.559151 NR_120674 LOC102724323 - uncharacterized LOC102724323 ncRNA 13-PTNLD9-TUMOR_peak_19922 chr16 84047525 84048228 + 13.76351 NA intron (NM_001080442, intron 8 of 9) intron (NM_001080442, intron 8 of 9) 27886 NM_001080442 146167 NM_001080442 ENSG00000166558 SLC38A8 FVH2 solute carrier family 38, member 8 protein-coding 13-PTNLD9-TUMOR_peak_42051 chr5 132072984 132073524 + 13.69822 NA promoter-TSS (NM_001300792) promoter-TSS (NM_001300792) 16 NM_001300792 11127 Hs.43670 NM_007054 HPRD:05250 KIF3A FLA10|KLP-20 kinesin family member 3A protein-coding 13-PTNLD9-TUMOR_peak_25102 chr19 44860804 44860940 + 13.64259 NA promoter-TSS (NM_013380) promoter-TSS (NM_013380) -16 NM_001083335 7771 Hs.48589 NM_013380 HPRD:15753 ZNF112 ZFP112|ZNF228 zinc finger protein 112 protein-coding 13-PTNLD9-TUMOR_peak_33661 chr3 8811096 8811286 + 13.62342 NA 5' UTR (NM_000916, exon 1 of 4) 5' UTR (NM_000916, exon 1 of 4) 109 NM_000916 5021 Hs.2820 NM_000916 HPRD:01328 OXTR OT-R oxytocin receptor protein-coding 13-PTNLD9-TUMOR_peak_56439 chrX 122993755 122994111 + 13.54160 NA promoter-TSS (NM_001167) promoter-TSS (NM_001167) -84 NM_001167 331 Hs.356076 NM_001167 HPRD:02094 XIAP API3|BIRC4|IAP-3|ILP1|MIHA|XLP2|hIAP-3|hIAP3 X-linked inhibitor of apoptosis protein-coding 13-PTNLD9-TUMOR_peak_18773 chr16 23193780 23194038 + 13.53459 NA promoter-TSS (NM_001039) promoter-TSS (NM_001039) -131 NM_001039 6340 Hs.371727 NM_001039 HPRD:02862 SCNN1G BESC3|ENaCg|ENaCgamma|PHA1|SCNEG sodium channel, non-voltage-gated 1, gamma subunit protein-coding 13-PTNLD9-TUMOR_peak_22381 chr17 81194982 81195144 + 13.46190 NA Intergenic (TTAGGG)n|Simple_repeat|Simple_repeat 20397 NR_029406 388574 Hs.546918 NR_029406 ENSG00000232938 FLJ43681 - ribosomal protein L23a pseudogene pseudo 13-PTNLD9-TUMOR_peak_33420 chr22 45723893 45724250 + 13.41841 NA intron (NM_001104595, intron 5 of 9) intron (NM_001104595, intron 5 of 9) 18286 NM_017911 55007 Hs.265018 NM_017911 HPRD:07936 FAM118A C22orf8 family with sequence similarity 118, member A protein-coding 13-PTNLD9-TUMOR_peak_2308 chr1 85086450 85086891 + 13.33290 NA promoter-TSS (NR_125761) promoter-TSS (NR_125761) 44 NR_125761 103695366 Hs.576097 NR_125761 LINC01461 TCONS_00001552 long intergenic non-protein coding RNA 1461 ncRNA 13-PTNLD9-TUMOR_peak_43733 chr6 10383629 10383935 + 13.29217 NA Intergenic CpG -28769 NR_033910 100130275 Hs.661431 NR_033910 TFAP2A-AS1 - TFAP2A antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_38208 chr4 39528909 39529897 + 13.24635 NA promoter-TSS (NM_003359) promoter-TSS (NM_003359) -56 NR_047679 100885776 Hs.640769 NR_047679 ENSG00000249348 UGDH-AS1 - UGDH antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_18968 chr16 30032642 30033083 + 13.18431 NA Intergenic CpG -1793 NM_001109659 146378 Hs.651588 NM_001109659 ENSG00000167194 C16orf92 - chromosome 16 open reading frame 92 protein-coding 13-PTNLD9-TUMOR_peak_10737 chr11 78128057 78128261 + 12.90414 NA intron (NM_080491, intron 1 of 9) CpG 709 NM_080491 9846 Hs.429434 NM_012296 HPRD:05866 GAB2 - GRB2-associated binding protein 2 protein-coding 13-PTNLD9-TUMOR_peak_31239 chr20 44961545 44961908 + 12.87534 NA Intergenic Intergenic -24589 NM_021248 64405 Hs.472861 NM_021248 HPRD:13018 CDH22 C20orf25|dJ998H6.1 cadherin 22, type 2 protein-coding 13-PTNLD9-TUMOR_peak_14211 chr12 124923620 124923961 + 12.83607 NA intron (NM_001077261, intron 9 of 47) (CAGAGA)n|Simple_repeat|Simple_repeat -102002 NR_106940 102466204 NR_106940 MIR6880 hsa-mir-6880 microRNA 6880 ncRNA 13-PTNLD9-TUMOR_peak_12527 chr12 37999686 37999804 + 12.77319 NA Intergenic ALR/Alpha|Satellite|centr -710812 NM_001013620 144245 Hs.259305 NM_001013620 ALG10B ALG10|KCR1 ALG10B, alpha-1,2-glucosyltransferase protein-coding 13-PTNLD9-TUMOR_peak_49941 chr8 1555775 1555956 + 12.63271 NA intron (NM_001277161, intron 3 of 10) L1PA2|LINE|L1 13965 NR_103863 100507435 Hs.667133 NR_103863 ENSG00000253267 DLGAP2-AS1 - DLGAP2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_17953 chr15 90294019 90294378 + 12.63271 NA exon (NM_018670, exon 1 of 2) exon (NM_018670, exon 1 of 2) 342 NM_018670 55897 Hs.447531 NM_018670 MESP1 bHLHc5 mesoderm posterior basic helix-loop-helix transcription factor 1 protein-coding 13-PTNLD9-TUMOR_peak_41174 chr5 69697030 69697172 + 12.62480 NA intron (NR_027386, intron 3 of 5) LTR12E|LTR|ERV1 -14096 NR_033417 653238 Hs.607501 NM_001098729 GTF2H2B - general transcription factor IIH, polypeptide 2B (pseudogene) pseudo 13-PTNLD9-TUMOR_peak_43162 chr5 175970484 175970657 + 12.61217 NA intron (NM_001171976, intron 1 of 31) CpG 1058 NM_001171976 54825 Hs.4205 NM_017675 HPRD:15103 CDHR2 PCDH24|PCLKC cadherin-related family member 2 protein-coding 13-PTNLD9-TUMOR_peak_50111 chr8 12458843 12459130 + 12.48179 NA intron (NR_047662, intron 5 of 8) CpG-25436 64134 NR_047662 729732 Hs.322761 NR_047662 LOC729732 - uncharacterized LOC729732 ncRNA 13-PTNLD9-TUMOR_peak_30554 chr20 19738496 19738729 + 12.39778 NA Intergenic CpG -128553 NM_001242581 54453 Hs.472270 NM_018993 HPRD:15249 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 13-PTNLD9-TUMOR_peak_22126 chr17 75792328 75792559 + 12.37396 NA Intergenic Intergenic -67802 NR_104134 100132174 Hs.640110 NR_104134 LOC100132174 - uncharacterized LOC100132174 ncRNA 13-PTNLD9-TUMOR_peak_41584 chr5 96518888 96519067 + 12.28444 NA promoter-TSS (NM_018343) promoter-TSS (NM_018343) 28 NM_018343 55781 Hs.27021 NM_018343 HPRD:10193 RIOK2 RIO2 RIO kinase 2 protein-coding 13-PTNLD9-TUMOR_peak_192 chr1 6295830 6296101 + 12.25832 NA promoter-TSS (NM_012405) promoter-TSS (NM_012405) 79 NM_012405 23463 Hs.515688 NM_012405 HPRD:09321 ICMT HSTE14|MST098|MSTP098|PCCMT|PCMT|PPMT isoprenylcysteine carboxyl methyltransferase protein-coding 13-PTNLD9-TUMOR_peak_34257 chr3 37217738 37217912 + 12.19598 NA promoter-TSS (NM_001134369) promoter-TSS (NM_001134369) 26 NM_017724 9209 Hs.740522 NM_006309 HPRD:10061 LRRFIP2 HUFI-2 leucine rich repeat (in FLII) interacting protein 2 protein-coding 13-PTNLD9-TUMOR_peak_39169 chr4 119606425 119606867 + 12.15243 NA promoter-TSS (NM_020961) promoter-TSS (NM_020961) 72 NM_020961 57721 Hs.657806 NM_020961 HPRD:13879 METTL14 - methyltransferase like 14 protein-coding 13-PTNLD9-TUMOR_peak_3006 chr1 117113002 117113733 + 12.07823 NA intron (NM_001144822, intron 1 of 4) CpG 348 NR_026665 965 Hs.34341 NM_001779 HPRD:01081 CD58 LFA-3|LFA3|ag3 CD58 molecule protein-coding 13-PTNLD9-TUMOR_peak_2873 chr1 112933568 112933703 + 12.05790 NA Intergenic Intergenic -5165 NM_018704 55917 Hs.744100 NM_018704 HPRD:10906 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 13-PTNLD9-TUMOR_peak_49928 chr8 580618 580764 + 12.02363 NA Intergenic Intergenic -84910 NM_175075 157695 Hs.289293 NM_175075 HPRD:13740 TDRP C8orf42|Inm01|TDRP1|TDRP2 testis development related protein protein-coding 13-PTNLD9-TUMOR_peak_18172 chr16 832760 833269 + 11.99893 NA Intergenic CpG 5369 NM_058192 113000 Hs.101742 NM_058192 HPRD:08507 RPUSD1 C16orf40|RLUCL RNA pseudouridylate synthase domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_37951 chr4 9533824 9534236 + 11.98985 NA Intergenic CpG 23907 NR_031688 100302277 NR_031688 miRBase:MI0006422 MIR548I2 MIR548I-2|MIRN548I2|hsa-mir-548i-2 microRNA 548i-2 ncRNA 13-PTNLD9-TUMOR_peak_41730 chr5 111093049 111093974 + 11.96024 NA promoter-TSS (NM_001142479) promoter-TSS (NM_001142479) -112 NM_001142478 9315 Hs.36053 NM_004772 HPRD:09545 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 13-PTNLD9-TUMOR_peak_53549 chr9 71650610 71650937 + 11.93684 NA exon (NM_000144, exon 1 of 5) exon (NM_000144, exon 1 of 5) 294 NM_001161706 2395 Hs.20685 NM_000144 HPRD:06013 FXN CyaY|FA|FARR|FRDA|X25 frataxin protein-coding 13-PTNLD9-TUMOR_peak_56487 chrX 130291697 130291819 + 11.92532 NA Intergenic L1PA2|LINE|L1 99542 NM_144967 158763 Hs.22905 NM_144967 HPRD:06547 ARHGAP36 - Rho GTPase activating protein 36 protein-coding 13-PTNLD9-TUMOR_peak_19934 chr16 84402026 84402187 + 11.92130 NA promoter-TSS (NM_001286527) promoter-TSS (NM_001286527) -23 NM_014861 9914 Hs.6168 NM_014861 HPRD:13812 ATP2C2 SPCA2 ATPase, Ca++ transporting, type 2C, member 2 protein-coding 13-PTNLD9-TUMOR_peak_47789 chr7 68278697 68278990 + 11.90766 NA Intergenic Intergenic 783638 NR_108105 100507468 Hs.362492 NR_108105 LOC100507468 - uncharacterized LOC100507468 ncRNA 13-PTNLD9-TUMOR_peak_39735 chr4 157892950 157893157 + 11.80525 NA promoter-TSS (NR_036641) promoter-TSS (NR_036641) -507 NR_036641 56034 Hs.570855 NM_016205 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 13-PTNLD9-TUMOR_peak_41917 chr5 125012229 125012335 + 11.79354 NA Intergenic L1PA2|LINE|L1 183328 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LOC101927460 - uncharacterized LOC101927460 ncRNA 13-PTNLD9-TUMOR_peak_33249 chr22 38301917 38302282 + 11.74136 NA promoter-TSS (NM_033386) promoter-TSS (NM_033386) -56 NM_033386 85377 Hs.517610 NM_033386 HPRD:11363 MICALL1 MICAL-L1|MIRAB13 MICAL-like 1 protein-coding 13-PTNLD9-TUMOR_peak_6392 chr10 6205669 6205864 + 11.67907 NA intron (NM_001282630, intron 1 of 14) CpG -11541 NR_039698 100628560 NR_039698 MIR3155B hsa-mir-3155b microRNA 3155b ncRNA 13-PTNLD9-TUMOR_peak_26647 chr2 39102793 39103181 + 11.57973 NA promoter-TSS (NM_198963) promoter-TSS (NM_198963) 34 NM_198963 90957 Hs.468226 NM_198963 HPRD:09919 DHX57 DDX57 DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 protein-coding 13-PTNLD9-TUMOR_peak_50482 chr8 28738857 28738983 + 11.51825 NA intron (NM_001145159, intron 1 of 15) SVA_F|Other|Other 8512 NM_001172562 55756 Hs.162397 NM_018250 HPRD:07706 INTS9 CPSF2L|INT9|RC74 integrator complex subunit 9 protein-coding 13-PTNLD9-TUMOR_peak_17553 chr15 70290328 70290591 + 11.51825 NA Intergenic MLT1H|LTR|ERVL-MaLR 81348 NR_030714 693214 NR_030714 MIR629 MIRN629|hsa-mir-629 microRNA 629 ncRNA 13-PTNLD9-TUMOR_peak_13417 chr12 82752156 82752648 + 11.48379 NA promoter-TSS (NM_014167) promoter-TSS (NM_014167) 126 NM_032230 84190 Hs.506222 NM_032230 HPRD:10979 METTL25 C12orf26 methyltransferase like 25 protein-coding 13-PTNLD9-TUMOR_peak_48478 chr7 99613101 99613302 + 11.48288 NA promoter-TSS (NM_003439) promoter-TSS (NM_003439) 6 NM_001287054 7586 Hs.615360 NM_003439 HPRD:03161 ZKSCAN1 9130423L19Rik|KOX18|PHZ-37|ZNF139|ZNF36|ZSCAN33 zinc finger with KRAB and SCAN domains 1 protein-coding 13-PTNLD9-TUMOR_peak_49008 chr7 128731675 128731791 + 11.46425 NA Intergenic Intergenic -34592 NR_002144 407835 Hs.592273 NR_002144 LOC407835 - mitogen-activated protein kinase kinase 2 pseudogene pseudo 13-PTNLD9-TUMOR_peak_24637 chr19 30302784 30302934 + 11.33967 NA promoter-TSS (NM_001238) promoter-TSS (NM_001238) -42 NM_001238 898 Hs.244723 NM_001238 HPRD:00455 CCNE1 CCNE cyclin E1 protein-coding 13-PTNLD9-TUMOR_peak_40403 chr5 15500123 15500308 + 11.32597 NA promoter-TSS (NM_012304) promoter-TSS (NM_012304) -90 NM_012304 23194 Hs.433057 NM_012304 HPRD:05740 FBXL7 FBL6|FBL7 F-box and leucine-rich repeat protein 7 protein-coding 13-PTNLD9-TUMOR_peak_53215 chr9 38242362 38242687 + 11.32597 NA Intergenic SVA_F|Other|Other -150137 NM_000692 219 Hs.436219 NM_000692 HPRD:00005 ALDH1B1 ALDH5|ALDHX aldehyde dehydrogenase 1 family, member B1 protein-coding 13-PTNLD9-TUMOR_peak_11885 chr12 4713921 4714202 + 11.32141 NA promoter-TSS (NM_001282286) promoter-TSS (NM_001282286) 32 NM_001282285 8798 Hs.439530 NM_003845 HPRD:10926 DYRK4 - dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 4 protein-coding 13-PTNLD9-TUMOR_peak_8233 chr10 104518838 104519069 + 11.32141 NA intron (NM_001083913, intron 1 of 3) LTR13A|LTR|ERVK 15226 NM_001083913 54838 Hs.500897 NM_017787 HPRD:12567 WBP1L C10orf26|OPA1L|OPAL1 WW domain binding protein 1-like protein-coding 13-PTNLD9-TUMOR_peak_33445 chr22 46409423 46409884 + 11.25073 NA Intergenic Intergenic 7157 NR_027240 730668 Hs.640071 NR_027240 LOC730668 - dynein heavy chain -like pseudogene pseudo 13-PTNLD9-TUMOR_peak_28901 chr2 161654344 161654442 + 11.15830 NA Intergenic L1PA3|LINE|L1 -304075 NM_002897 5937 Hs.470412 NM_002897 HPRD:03814 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif, single stranded interacting protein 1 protein-coding 13-PTNLD9-TUMOR_peak_11930 chr12 6041596 6041776 + 11.13785 NA intron (NM_001278597, intron 1 of 25) GA-rich|Low_complexity|Low_complexity 12739 NM_001278596 57101 Hs.148970 NM_020373 HPRD:11634 ANO2 C12orf3|TMEM16B anoctamin 2, calcium activated chloride channel protein-coding 13-PTNLD9-TUMOR_peak_649 chr1 22755737 22755836 + 11.10471 NA Intergenic AluY|SINE|Alu -22558 NM_014870 9923 Hs.418966 NM_014870 HPRD:11086 ZBTB40 ZNF923 zinc finger and BTB domain containing 40 protein-coding 13-PTNLD9-TUMOR_peak_34574 chr3 49977337 49977948 + 11.08048 NA 5' UTR (NM_001167582, exon 1 of 17) 5' UTR (NM_001167582, exon 1 of 17) 165 NM_001167582 10180 Hs.696735 NM_005777 HPRD:06054 RBM6 3G2|DEF-3|DEF3|HLC-11|NY-LU-12|g16 RNA binding motif protein 6 protein-coding 13-PTNLD9-TUMOR_peak_30964 chr20 36156461 36156633 + 11.04625 NA promoter-TSS (NM_001167821) promoter-TSS (NM_001167821) -214 NM_006698 10904 Hs.472651 NM_006698 HPRD:16552 BLCAP BC10 bladder cancer associated protein protein-coding 13-PTNLD9-TUMOR_peak_39527 chr4 144725325 144725426 + 11.01171 NA Intergenic L1PA3|LINE|L1 101341 NM_002102 2996 Hs.654368 NM_002102 HPRD:00723 GYPE GPE|MNS|MiIX glycophorin E (MNS blood group) protein-coding 13-PTNLD9-TUMOR_peak_42261 chr5 138629303 138629707 + 10.97537 NA promoter-TSS (NM_001194956) promoter-TSS (NM_001194956) 66 NM_001194956 9782 Hs.268939 NM_018834 HPRD:05270 MATR3 ALS21|MPD2|VCPDM matrin 3 protein-coding 13-PTNLD9-TUMOR_peak_4759 chr1 185226339 185226564 + 10.97537 NA intron (NM_017673, intron 16 of 18) L1PA2|LINE|L1 60010 NM_006469 10625 Hs.497183 NM_006469 HPRD:10004 IVNS1ABP FLARA3|HSPC068|KLHL39|ND1|NS-1|NS1-BP|NS1BP influenza virus NS1A binding protein protein-coding 13-PTNLD9-TUMOR_peak_17210 chr15 45315310 45315427 + 10.94343 NA promoter-TSS (NM_003104) promoter-TSS (NM_003104) 66 NR_034039 6652 Hs.878 NM_003104 SORD HEL-S-95n|SORD1 sorbitol dehydrogenase protein-coding 13-PTNLD9-TUMOR_peak_28542 chr2 134668708 134668850 + 10.90556 NA Intergenic L1PA2|LINE|L1 -215917 NR_037450 100500878 NR_037450 miRBase:MI0016080 MIR3679 - microRNA 3679 ncRNA 13-PTNLD9-TUMOR_peak_37374 chr3 195351505 195351755 + 10.87548 NA Intergenic CpG -33280 NR_003265 727956 Hs.596261 NR_003265 ENSG00000242086 SDHAP2 SDHAL2|SDHALP2 succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_18028 chr15 94774576 94774761 + 10.73820 NA Intergenic CpG -66762 NM_001159643 55784 Hs.33368 NM_018349 HPRD:07738 MCTP2 - multiple C2 domains, transmembrane 2 protein-coding 13-PTNLD9-TUMOR_peak_7040 chr10 39150285 39150411 + 10.73196 NA Intergenic (GAATG)n|Satellite|Satellite 160621 NR_045000 399746 Hs.742607 NR_045000 ENSG00000227264 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 13-PTNLD9-TUMOR_peak_49189 chr7 134232234 134232577 + 10.69696 NA Intergenic HERVI-int|LTR|ERV1 -1444 NM_001080538 441282 Hs.729418 NM_001080538 ENSG00000227471 AKR1B15 AKR1B10L, AK1R1B7 aldo-keto reductase family 1, member B15 protein-coding 13-PTNLD9-TUMOR_peak_32506 chr21 45138900 45139344 + 10.66179 NA 5' UTR (NM_003681, exon 1 of 11) 5' UTR (NM_003681, exon 1 of 11) 144 NM_003681 8566 Hs.284491 NM_003681 HPRD:01526 PDXK C21orf124|C21orf97|HEL-S-1a|PKH|PNK pyridoxal (pyridoxine, vitamin B6) kinase protein-coding 13-PTNLD9-TUMOR_peak_25118 chr19 45273851 45274044 + 10.50445 NA Intergenic Intergenic -7179 NM_001130852 23624 Hs.466907 NM_012116 HPRD:09765 CBLC CBL-3|CBL-SL|RNF57 Cbl proto-oncogene C, E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_51326 chr8 95835405 95835786 + 10.42566 NA promoter-TSS (NM_017864) promoter-TSS (NM_017864) 77 NM_017864 55656 Hs.727669 NM_017864 HPRD:08626 INTS8 C8orf52|INT8 integrator complex subunit 8 protein-coding 13-PTNLD9-TUMOR_peak_26506 chr2 31456788 31457069 + 10.38127 NA promoter-TSS (NM_014600) promoter-TSS (NM_014600) 48 NM_014600 30845 Hs.368808 NM_014600 EHD3 PAST3 EH-domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_2741 chr1 109633072 109633383 + 10.34315 NA promoter-TSS (NM_020141) promoter-TSS (NM_020141) -176 NM_020141 56900 Hs.82933 NM_020141 TMEM167B C1orf119 transmembrane protein 167B protein-coding 13-PTNLD9-TUMOR_peak_41975 chr5 128518480 128518585 + 10.34315 NA Intergenic L1PA4|LINE|L1 85151 NR_039776 100616175 NR_039776 MIR4633 - microRNA 4633 ncRNA 13-PTNLD9-TUMOR_peak_42299 chr5 139487057 139487445 + 10.32470 NA non-coding (NR_102741, exon 1 of 4) non-coding (NR_102741, exon 1 of 4) 346 NR_102741 100505636 Hs.438871 NR_102739 ENSG00000245146 LINC01024 - long intergenic non-protein coding RNA 1024 ncRNA 13-PTNLD9-TUMOR_peak_4798 chr1 187041818 187042250 + 10.31537 NA Intergenic LTR12C|LTR|ERV1 244002 NM_024420 5321 Hs.497200 NM_024420 HPRD:08986 PLA2G4A PLA2G4|cPLA2-alpha phospholipase A2, group IVA (cytosolic, calcium-dependent) protein-coding 13-PTNLD9-TUMOR_peak_15239 chr14 20881187 20881731 + 10.31537 NA intron (NM_007110, intron 1 of 54) intron (NM_007110, intron 1 of 54) 120 NM_007110 7011 Hs.508835 NM_007110 HPRD:03404 TEP1 TLP1|TP1|TROVE1|VAULT2|p240 telomerase-associated protein 1 protein-coding 13-PTNLD9-TUMOR_peak_9696 chr11 46414143 46414336 + 10.28182 NA Intergenic CpG -6132 NM_000741 1132 Hs.248100 NM_000741 HPRD:00330 CHRM4 HM4|M4R cholinergic receptor, muscarinic 4 protein-coding 13-PTNLD9-TUMOR_peak_34414 chr3 45429898 45430017 + 10.19617 NA promoter-TSS (NM_015340) promoter-TSS (NM_015340) -118 NM_015340 23395 Hs.526975 NM_015340 HPRD:05178 LARS2 LEURS|PRLTS4 leucyl-tRNA synthetase 2, mitochondrial protein-coding 13-PTNLD9-TUMOR_peak_44943 chr6 40296540 40296702 + 10.19617 NA Intergenic Intergenic 27124 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 13-PTNLD9-TUMOR_peak_23236 chr18 53257078 53257249 + 10.19617 NA promoter-TSS (NM_001243228) promoter-TSS (NM_001243228) -118 NM_001243228 6925 Hs.605153 NM_003199 HPRD:03780 TCF4 E2-2|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19 transcription factor 4 protein-coding 13-PTNLD9-TUMOR_peak_13279 chr12 69863995 69864199 + 10.12852 NA promoter-TSS (NM_001278354) promoter-TSS (NM_001278354) -32 NM_001278354 10818 Hs.593446 NM_006654 HPRD:06372 FRS2 FRS2A|FRS2alpha|SNT|SNT-1|SNT1 fibroblast growth factor receptor substrate 2 protein-coding 13-PTNLD9-TUMOR_peak_55865 chrX 51260614 51260720 + 10.06666 NA Intergenic L1PA3|LINE|L1 -10374 NR_110654 102723426 Hs.584513 NR_110654 LINC01496 - long intergenic non-protein coding RNA 1496 ncRNA 13-PTNLD9-TUMOR_peak_21176 chr17 42767051 42767526 + 10.03672 NA promoter-TSS (NM_144609) promoter-TSS (NM_144609) -123 NM_144609 124808 Hs.579115 NM_144609 HPRD:08107 CCDC43 - coiled-coil domain containing 43 protein-coding 13-PTNLD9-TUMOR_peak_17966 chr15 90777099 90777506 + 10.03672 NA promoter-TSS (NM_006384) promoter-TSS (NM_006384) -23 NM_001277764 10519 Hs.715556 NM_006384 CIB1 CIB|CIBP|KIP1|PRKDCIP|SIP2-28 calcium and integrin binding 1 (calmyrin) protein-coding 13-PTNLD9-TUMOR_peak_17632 chr15 74286918 74287097 + 10.00125 NA promoter-TSS (NM_033244) promoter-TSS (NM_033244) -7 NM_033250 5371 Hs.526464 NM_002675 HPRD:00023 PML MYL|PP8675|RNF71|TRIM19 promyelocytic leukemia protein-coding 13-PTNLD9-TUMOR_peak_38303 chr4 49104436 49104614 + 9.96623 NA Intergenic (CATTC)n|Satellite|Satellite 115866 NM_001286791 80157 Hs.479703 NM_025087 HPRD:08638 CWH43 CWH43-C cell wall biogenesis 43 C-terminal homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_5493 chr1 222988243 222988502 + 9.91530 NA promoter-TSS (NM_032890) promoter-TSS (NM_032890) -59 NM_032890 84976 Hs.528817 NM_032890 HPRD:06326 DISP1 DISPA dispatched homolog 1 (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_24277 chr19 16557846 16558012 + 9.83991 NA intron (NM_001258374, intron 1 of 23) intron (NM_001258374, intron 1 of 23) 24894 NM_001258374 58513 Hs.654639 NM_021235 HPRD:09445 EPS15L1 EPS15R epidermal growth factor receptor pathway substrate 15-like 1 protein-coding 13-PTNLD9-TUMOR_peak_9877 chr11 57103334 57103529 + 9.83306 NA promoter-TSS (NM_003146) promoter-TSS (NM_003146) -80 NM_003146 6749 Hs.523680 NM_003146 HPRD:05061 SSRP1 FACT|FACT80|T160 structure specific recognition protein 1 protein-coding 13-PTNLD9-TUMOR_peak_44622 chr6 32563246 32563449 + 9.75929 NA Intergenic SVA_F|Other|Other -5734 NM_002124 3123 Hs.534322 NM_002124 HPRD:08349 HLA-DRB1 DRB1|DRw10|HLA-DR1B|HLA-DRB|SS1 major histocompatibility complex, class II, DR beta 1 protein-coding 13-PTNLD9-TUMOR_peak_9841 chr11 55008683 55008835 + 9.71487 NA Intergenic ALR/Alpha|Satellite|centr -20899 NM_024114 79097 Hs.195715 NM_024114 HPRD:15565 TRIM48 RNF101 tripartite motif containing 48 protein-coding 13-PTNLD9-TUMOR_peak_55312 chrUn_gl000224 64 246 + 9.71472 NA NA Intergenic NA NA 13-PTNLD9-TUMOR_peak_26128 chr2 11270107 11270258 + 9.71064 NA intron (NR_040080, intron 1 of 8) intron (NR_040080, intron 1 of 8) 2120 NR_040080 285150 Hs.329841 NM_182586 HPRD:08158 FLJ33534 - uncharacterized LOC285150 ncRNA 13-PTNLD9-TUMOR_peak_37509 chr3 197900175 197900363 + 9.70688 NA intron (NM_001145248, intron 6 of 6) (TTAGGG)n|Simple_repeat|Simple_repeat 21032 NM_001145248 728262 Hs.744675 NM_001145248 FAM157A - family with sequence similarity 157, member A protein-coding 13-PTNLD9-TUMOR_peak_11199 chr11 111741980 111742125 + 9.62521 NA promoter-TSS (NM_001077692) promoter-TSS (NM_001077692) -48 NM_001077692 79796 Hs.745155 NM_024740 ALG9 CDG1L|DIBD1|LOH11CR1J ALG9, alpha-1,2-mannosyltransferase protein-coding 13-PTNLD9-TUMOR_peak_32948 chr22 24553005 24553156 + 9.61994 NA intron (NM_012295, intron 29 of 36) intron (NM_012295, intron 29 of 36) -24364 NM_019601 56241 Hs.131819 NM_019601 HPRD:18132 SUSD2 BK65A6.2 sushi domain containing 2 protein-coding 13-PTNLD9-TUMOR_peak_43319 chr5 179718933 179719215 + 9.59404 NA promoter-TSS (NM_001135044) promoter-TSS (NM_001135044) -3 NM_139068 5601 Hs.484371 NM_002752 HPRD:04206 MAPK9 JNK-55|JNK2|JNK2A|JNK2ALPHA|JNK2B|JNK2BETA|PRKM9|SAPK|SAPK1a|p54a|p54aSAPK mitogen-activated protein kinase 9 protein-coding 13-PTNLD9-TUMOR_peak_53547 chr9 71394832 71395398 + 9.59082 NA exon (NM_138333, exon 1 of 1) exon (NM_138333, exon 1 of 1) 151 NM_138333 116224 Hs.655572 NM_138333 HPRD:10074 FAM122A C9orf42 family with sequence similarity 122A protein-coding 13-PTNLD9-TUMOR_peak_6403 chr10 6622297 6622462 + 9.58150 NA promoter-TSS (NM_001282645) promoter-TSS (NM_001282645) -8 NR_036503 439949 Hs.13262 NR_036502 PRKCQ-AS1 - PRKCQ antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_49789 chr7 155120246 155120656 + 9.56048 NA Intergenic Intergenic 30965 NM_005542 3638 Hs.520819 NM_005542 HPRD:03633 INSIG1 CL-6|CL6 insulin induced gene 1 protein-coding 13-PTNLD9-TUMOR_peak_14303 chr12 130290849 130290947 + 9.49408 NA intron (NM_133448, intron 1 of 8) L1PA3|LINE|L1 97314 NM_133448 121256 Hs.507268 NM_133448 HPRD:13906 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 13-PTNLD9-TUMOR_peak_12571 chr12 40499858 40499978 + 9.47328 NA promoter-TSS (NM_052885) promoter-TSS (NM_052885) -257 NM_052885 114134 Hs.558595 NM_052885 HPRD:15363 SLC2A13 HMIT solute carrier family 2 (facilitated glucose transporter), member 13 protein-coding 13-PTNLD9-TUMOR_peak_22917 chr18 32924379 32924661 + 9.43481 NA promoter-TSS (NM_006965) promoter-TSS (NM_006965) -94 NM_006965 7572 Hs.514802 NM_006965 HPRD:01921 ZNF24 KOX17|RSG-A|ZNF191|ZSCAN3|Zfp191 zinc finger protein 24 protein-coding 13-PTNLD9-TUMOR_peak_43930 chr6 16129477 16129627 + 9.42205 NA 5' UTR (NM_013262, exon 1 of 7) 5' UTR (NM_013262, exon 1 of 7) 235 NM_013262 29116 Hs.484738 NM_013262 HPRD:17621 MYLIP IDOL|MIR myosin regulatory light chain interacting protein protein-coding 13-PTNLD9-TUMOR_peak_22797 chr18 21718886 21719041 + 9.40729 NA promoter-TSS (NM_153770) promoter-TSS (NM_153770) 43 NM_012189 26256 Hs.511983 NM_012189 HPRD:10806 CABYR CABYRa|CABYRc|CABYRc/d|CABYRe|CBP86|CT88|FSP-2|FSP2 calcium binding tyrosine-(Y)-phosphorylation regulated protein-coding 13-PTNLD9-TUMOR_peak_48515 chr7 100063557 100063705 + 9.40661 NA TTS (NM_030935) TTS (NM_030935) -1737 NM_001004323 402573 Hs.632306 NM_001004323 HPRD:17558 C7orf61 - chromosome 7 open reading frame 61 protein-coding 13-PTNLD9-TUMOR_peak_2544 chr1 94713341 94713468 + 9.37153 NA Intergenic CpG -10097 NM_004815 9411 Hs.483238 NM_004815 ARHGAP29 PARG1 Rho GTPase activating protein 29 protein-coding 13-PTNLD9-TUMOR_peak_37298 chr3 193853738 193853992 + 9.32670 NA promoter-TSS (NM_005524) promoter-TSS (NM_005524) -66 NM_005524 3280 Hs.250666 NM_005524 HPRD:00770 HES1 HES-1|HHL|HRY|bHLHb39 hes family bHLH transcription factor 1 protein-coding 13-PTNLD9-TUMOR_peak_37454 chr3 196729651 196729878 + 9.31318 NA promoter-TSS (NR_038285) promoter-TSS (NR_038285) -13 NR_038285 100507057 Hs.666451 NR_038285 ENSG00000228109 MFI2-AS1 - MFI2 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_1467 chr1 43833755 43834269 + 9.22456 NA promoter-TSS (NM_022821) promoter-TSS (NM_022821) -267 NM_001256402 64834 Hs.25597 NM_022821 HPRD:10935 ELOVL1 Ssc1 ELOVL fatty acid elongase 1 protein-coding 13-PTNLD9-TUMOR_peak_23710 chr19 4035742 4035913 + 9.12528 NA intron (NM_015897, intron 9 of 10) (CA)n|Simple_repeat|Simple_repeat 28078 NM_015897 51588 Hs.105779 NM_015897 PIAS4 PIASY|Piasg|ZMIZ6 protein inhibitor of activated STAT, 4 protein-coding 13-PTNLD9-TUMOR_peak_41624 chr5 100238866 100239123 + 9.11646 NA promoter-TSS (NM_005668) promoter-TSS (NM_005668) -5 NM_175052 7903 Hs.308628 NM_005668 HPRD:03970 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 13-PTNLD9-TUMOR_peak_21944 chr17 72667463 72667645 + 9.09697 NA 5' UTR (NM_175738, exon 1 of 9) 5' UTR (NM_175738, exon 1 of 9) 298 NM_175738 326624 Hs.351413 NM_175738 HPRD:06702 RAB37 - RAB37, member RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_44941 chr6 39902211 39902322 + 9.09697 NA promoter-TSS (NM_001075098) promoter-TSS (NM_001075098) 24 NM_001075098 4337 Hs.357128 NM_005942 HPRD:04749 MOCS1 MIG11|MOCOD|MOCODA molybdenum cofactor synthesis 1 protein-coding 13-PTNLD9-TUMOR_peak_2214 chr1 76308346 76308573 + 9.08578 NA intron (NM_002440, intron 7 of 19) LTR13|LTR|ERVK 45903 NM_002440 4438 Hs.216639 NM_002440 HPRD:03658 MSH4 - mutS homolog 4 protein-coding 13-PTNLD9-TUMOR_peak_49874 chr7 158460106 158460491 + 9.04033 NA intron (NM_001281933, intron 13 of 27) intron (NM_001281933, intron 13 of 27) 37224 NR_104054 54892 Hs.18616 NM_017760 HPRD:10539 NCAPG2 CAP-G2|CAPG2|LUZP5|MTB|hCAP-G2 non-SMC condensin II complex, subunit G2 protein-coding 13-PTNLD9-TUMOR_peak_23169 chr18 47689128 47689634 + 9.00304 NA intron (NM_001080467, intron 1 of 39) intron (NM_001080467, intron 1 of 39) 32070 NM_001080467 4645 Hs.720076 NM_001080467 ENSG00000167306 MYO5B - myosin VB protein-coding 13-PTNLD9-TUMOR_peak_43053 chr5 172386106 172386453 + 8.98404 NA promoter-TSS (NM_016093) promoter-TSS (NM_016093) 92 NR_026682 100268168 Hs.519766 NR_026682 ENSG00000204758 LOC100268168 - uncharacterized LOC100268168 ncRNA 13-PTNLD9-TUMOR_peak_37544 chr4 786204 786330 + 8.97363 NA exon (NM_006651, exon 3 of 4) exon (NM_006651, exon 3 of 4) -10631 NR_036511 100129917 Hs.731755 NR_036511 ENSG00000249592 LOC100129917 - uncharacterized LOC100129917 ncRNA 13-PTNLD9-TUMOR_peak_18894 chr16 28761621 28761919 + 8.97169 NA Intergenic CpG -1986 NM_001287250 100507607 Hs.710214 NM_001287250 NPIPB9 - nuclear pore complex interacting protein family, member B9 protein-coding 13-PTNLD9-TUMOR_peak_38292 chr4 49093837 49094150 + 8.96937 NA Intergenic (CATTC)n|Satellite|Satellite 105334 NM_001286791 80157 Hs.479703 NM_025087 HPRD:08638 CWH43 CWH43-C cell wall biogenesis 43 C-terminal homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_56818 chrY 10022438 10022543 + 8.95234 NA Intergenic Intergenic 274083 NR_001540 252955 Hs.522846 NR_001540 ENSG00000239225 TTTY23 NCRNA00148|TTTY23B testis-specific transcript, Y-linked 23 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_18066 chr15 99602270 99602658 + 8.87778 NA Intergenic CpG -42822 NM_015286 23336 Hs.207106 NM_015286 HPRD:07305 SYNM DMN|SYN synemin, intermediate filament protein protein-coding 13-PTNLD9-TUMOR_peak_53061 chr9 33816543 33816911 + 8.76739 NA promoter-TSS (NM_017811) promoter-TSS (NM_017811) -455 NM_017811 54926 Hs.643648 NM_017811 HPRD:15602 UBE2R2 CDC34B|E2-CDC34B|UBC3B ubiquitin-conjugating enzyme E2R 2 protein-coding 13-PTNLD9-TUMOR_peak_50766 chr8 43034760 43035054 + 8.74911 NA intron (NM_152419, intron 10 of 17) SVA_E|Other|Other 39315 NM_152419 138050 Hs.600384 NM_152419 ENSG00000165102 HGSNAT HGNAT|MPS3C|TMEM76 heparan-alpha-glucosaminide N-acetyltransferase protein-coding 13-PTNLD9-TUMOR_peak_7483 chr10 62703895 62704158 + 8.69314 NA promoter-TSS (NM_001242359) promoter-TSS (NM_001242359) 7 NM_001242359 9886 Hs.737374 NM_014836 HPRD:06299 RHOBTB1 - Rho-related BTB domain containing 1 protein-coding 13-PTNLD9-TUMOR_peak_41979 chr5 129239881 129240236 + 8.65266 NA promoter-TSS (NM_175856) promoter-TSS (NM_175856) -465 NM_175856 337876 Hs.213137 NM_175856 HPRD:16766 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 13-PTNLD9-TUMOR_peak_4125 chr1 161068012 161068360 + 8.64765 NA promoter-TSS (NM_152366) promoter-TSS (NM_152366) 5 NM_001007255 126823 Hs.507290 NM_152366 HPRD:13751 KLHDC9 KARCA1 kelch domain containing 9 protein-coding 13-PTNLD9-TUMOR_peak_47332 chr7 43909067 43909346 + 8.62765 NA promoter-TSS (NM_032014) promoter-TSS (NM_032014) -61 NM_032014 64951 Hs.284286 NM_032014 HPRD:17593 MRPS24 MRP-S24|S24mt|bMRP-47|bMRP47 mitochondrial ribosomal protein S24 protein-coding 13-PTNLD9-TUMOR_peak_49845 chr7 157640131 157640275 + 8.54431 NA intron (NM_130842, intron 11 of 21) intron (NM_130842, intron 11 of 21) -7074 NR_038966 100506585 Hs.661265 NR_038966 ENSG00000233038 LOC100506585 - uncharacterized LOC100506585 ncRNA 13-PTNLD9-TUMOR_peak_31014 chr20 37678653 37678936 + 8.47182 NA Intergenic CpG 87813 NM_021931 60625 Hs.444520 NM_021931 HPRD:13145 DHX35 C20orf15|DDX35|KAIA0875 DEAH (Asp-Glu-Ala-His) box polypeptide 35 protein-coding 13-PTNLD9-TUMOR_peak_11038 chr11 100967158 100967349 + 8.45230 NA intron (NR_073141, intron 2 of 7) intron (NR_073141, intron 2 of 7) 32541 NM_001202474 5241 Hs.32405 NM_000926 HPRD:07077 PGR NR3C3|PR progesterone receptor protein-coding 13-PTNLD9-TUMOR_peak_25227 chr19 47729440 47729627 + 8.42108 NA promoter-TSS (NR_036158) promoter-TSS (NR_036158) -666 NR_036158 100422899 NR_036158 miRBase:MI0014235 MIR3190 - microRNA 3190 ncRNA 13-PTNLD9-TUMOR_peak_55333 chrUn_gl000225 25920 26048 + 8.34272 NA NA BSR/Beta|Satellite|Satellite NA NA 13-PTNLD9-TUMOR_peak_2723 chr1 109102529 109102724 + 8.32824 NA promoter-TSS (NM_001010883) promoter-TSS (NM_001010883) -345 NM_001010883 284611 Hs.200230 NM_001010883 HPRD:17339 FAM102B SYM-3B family with sequence similarity 102, member B protein-coding 13-PTNLD9-TUMOR_peak_8729 chr11 448170 448458 + 8.27815 NA Intergenic Intergenic -1966 NM_030783 81490 Hs.731700 NM_030783 HPRD:17927 PTDSS2 PSS2 phosphatidylserine synthase 2 protein-coding 13-PTNLD9-TUMOR_peak_40211 chr5 3276221 3276503 + 8.27385 NA Intergenic G-rich|Low_complexity|Low_complexity 98413 NR_104617 102467074 Hs.575250 NR_104617 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 13-PTNLD9-TUMOR_peak_15385 chr14 24740806 24741006 + 8.26574 NA promoter-TSS (NM_182836) promoter-TSS (NM_182836) -73 NM_004581 5875 Hs.377992 NM_004581 HPRD:03547 RABGGTA PTAR3 Rab geranylgeranyltransferase, alpha subunit protein-coding 13-PTNLD9-TUMOR_peak_41993 chr5 130208458 130208646 + 8.22988 NA Intergenic L1PA3|LINE|L1 292489 NR_073488 3094 Hs.483305 NM_005340 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_38908 chr4 95372939 95373109 + 8.21174 NA promoter-TSS (NM_006457) promoter-TSS (NM_006457) 16 NM_001011515 10611 Hs.480311 NM_006457 HPRD:05799 PDLIM5 ENH|ENH1|LIM PDZ and LIM domain 5 protein-coding 13-PTNLD9-TUMOR_peak_21607 chr17 56151216 56151324 + 8.17308 NA Intergenic SVA_D|Other|Other 9295 NR_110809 101927666 Hs.552237 NR_110809 ENSG00000266290 LOC101927666 - uncharacterized LOC101927666 ncRNA 13-PTNLD9-TUMOR_peak_43936 chr6 16238625 16238888 + 8.12999 NA promoter-TSS (NM_006877) promoter-TSS (NM_006877) -55 NM_006877 2766 Hs.484741 NM_006877 HPRD:00754 GMPR GMPR1 guanosine monophosphate reductase protein-coding 13-PTNLD9-TUMOR_peak_18086 chr15 100957792 100957888 + 8.05865 NA intron (NR_120374, intron 3 of 4) L1PA2|LINE|L1 44696 NR_120374 102723320 Hs.416099 NR_120374 LOC102723320 - uncharacterized LOC102723320 ncRNA 13-PTNLD9-TUMOR_peak_3203 chr1 143744572 143744960 + 8.05263 NA promoter-TSS (NR_027468) promoter-TSS (NR_027468) -247 NR_027468 388685 Hs.713362 NM_207400 LINC01138 LINC00875 long intergenic non-protein coding RNA 1138 ncRNA 13-PTNLD9-TUMOR_peak_53391 chr9 65969113 65969283 + 8.02622 NA Intergenic MER52A|LTR|ERV1 -459588 NM_001113541 727905 Hs.645497 NM_001113541 ENSG00000233788 SPATA31A5 FAM75A5 SPATA31 subfamily A, member 5 protein-coding 13-PTNLD9-TUMOR_peak_2340 chr1 86046355 86046458 + 8.00698 NA promoter-TSS (NM_001554) promoter-TSS (NM_001554) -38 NM_001554 3491 Hs.8867 NM_001554 HPRD:09089 CYR61 CCN1|GIG1|IGFBP10 cysteine-rich, angiogenic inducer, 61 protein-coding 13-PTNLD9-TUMOR_peak_29200 chr2 178257553 178257812 + 7.92680 NA promoter-TSS (NR_026966) promoter-TSS (NR_026966) 211 NM_003659 8540 Hs.516543 NM_003659 HPRD:04337 AGPS ADAP-S|ADAS|ADHAPS|ADPS|ALDHPSY alkylglycerone phosphate synthase protein-coding 13-PTNLD9-TUMOR_peak_43235 chr5 177557896 177558107 + 7.92680 NA promoter-TSS (NM_001288794) promoter-TSS (NM_001288794) 39 NM_001288795 64777 Hs.27222 NM_022762 HPRD:07985 RMND5B GID2|GID2B required for meiotic nuclear division 5 homolog B (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_16205 chr14 71374029 71374524 + 7.88389 NA 5' UTR (NM_014982, exon 1 of 36) 5' UTR (NM_014982, exon 1 of 36) 154 NM_014982 22990 Hs.446559 NM_014982 HPRD:10139 PCNX PCNXL1|pecanex pecanex homolog (Drosophila) protein-coding 13-PTNLD9-TUMOR_peak_7916 chr10 86534825 86534924 + 7.88297 NA Intergenic L1PA3|LINE|L1 349936 NM_001284242 54462 Hs.461988 NM_018999 HPRD:13832 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine-rich protein 2 protein-coding 13-PTNLD9-TUMOR_peak_23598 chr19 1082459 1082766 + 7.85744 NA intron (NM_001258328, intron 19 of 22) CpG 5979 NM_001282334 23526 Hs.465521 NM_012292 HPRD:03097 HMHA1 ARHGAP45|HA-1|HLA-HA1 histocompatibility (minor) HA-1 protein-coding 13-PTNLD9-TUMOR_peak_54719 chr9 125590856 125591045 + 7.82995 NA promoter-TSS (NM_005388) promoter-TSS (NM_005388) -15 NM_005388 5082 Hs.271749 NM_005388 HPRD:05108 PDCL PhLP phosducin-like protein-coding 13-PTNLD9-TUMOR_peak_38567 chr4 73433834 73434019 + 7.77935 NA intron (NM_014243, intron 1 of 21) CpG 590 NM_014243 9508 Hs.590919 NM_014243 HPRD:06893 ADAMTS3 ADAMTS-4 ADAM metallopeptidase with thrombospondin type 1 motif, 3 protein-coding 13-PTNLD9-TUMOR_peak_19493 chr16 58768219 58768347 + 7.77935 NA promoter-TSS (NM_002080) promoter-TSS (NM_002080) -22 NM_001286220 2806 Hs.599470 NM_002080 HPRD:00684 GOT2 KAT4|KATIV|mitAAT glutamic-oxaloacetic transaminase 2, mitochondrial protein-coding 13-PTNLD9-TUMOR_peak_31331 chr20 47237543 47237721 + 7.74994 NA Intergenic Intergenic 206788 NM_020820 57580 Hs.153310 NM_020820 HPRD:06066 PREX1 P-REX1 phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1 protein-coding 13-PTNLD9-TUMOR_peak_13699 chr12 106696332 106696698 + 7.74865 NA promoter-TSS (NM_001286262) promoter-TSS (NM_001286262) -54 NM_001286262 255394 Hs.696047 NM_152772 HPRD:17555 TCP11L2 - t-complex 11, testis-specific-like 2 protein-coding 13-PTNLD9-TUMOR_peak_34833 chr3 64008902 64009271 + 7.74018 NA promoter-TSS (NM_001271781) promoter-TSS (NM_001271781) 62 NM_001271781 9861 Hs.152536 NM_014814 HPRD:18370 PSMD6 Rpn7|S10|SGA-113M|p42A|p44S10 proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 protein-coding 13-PTNLD9-TUMOR_peak_13038 chr12 57674021 57674246 + 7.69060 NA intron (NM_014925, intron 12 of 21) intron (NM_014925, intron 12 of 21) -29157 NM_145064 246329 Hs.417595 NM_145064 HPRD:11606 STAC3 NAM SH3 and cysteine rich domain 3 protein-coding 13-PTNLD9-TUMOR_peak_1263 chr1 40042457 40042600 + 7.67093 NA promoter-TSS (NM_003819) promoter-TSS (NM_003819) -7 NM_003819 8761 Hs.169900 NM_003819 HPRD:04557 PABPC4 APP-1|APP1|PABP4|iPABP poly(A) binding protein, cytoplasmic 4 (inducible form) protein-coding 13-PTNLD9-TUMOR_peak_1145 chr1 36771846 36772006 + 7.67093 NA promoter-TSS (NM_024676) promoter-TSS (NM_024676) -68 NM_001162530 79729 Hs.524496 NM_024676 HPRD:08011 SH3D21 C1orf113 SH3 domain containing 21 protein-coding 13-PTNLD9-TUMOR_peak_44254 chr6 26521419 26521535 + 7.66273 NA promoter-TSS (NR_026790) promoter-TSS (NR_026790) -457 NR_026790 493812 Hs.272939 NR_026790 ENSG00000228223 HCG11 bK14H9.3 HLA complex group 11 (non-protein coding) ncRNA 13-PTNLD9-TUMOR_peak_7923 chr10 87529555 87529732 + 7.60207 NA intron (NM_017551, intron 8 of 15) L1PA3|LINE|L1 192155 NR_038986 100507470 Hs.585483 NR_038986 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_17826 chr15 83182644 83182759 + 7.53877 NA non-coding (NR_033936, exon 1 of 7) non-coding (NR_033936, exon 1 of 7) 272 NR_102747 727751 Hs.546614 NR_102747 LOC727751 - golgin A2 pseudogene pseudo 13-PTNLD9-TUMOR_peak_14407 chr13 21872174 21872381 + 7.51594 NA promoter-TSS (NR_046461) promoter-TSS (NR_046461) 13 NR_046461 650794 Hs.147563 NR_038939 MIPEPP3 - mitochondrial intermediate peptidase pseudogene 3 pseudo 13-PTNLD9-TUMOR_peak_17802 chr15 82798066 82798181 + 7.50610 NA non-coding (NR_033936, exon 1 of 7).2 non-coding (NR_033936, exon 1 of 7).2 276 NR_033936 80154 Hs.454640 NM_025084 GOLGA2P10 - golgin A2 pseudogene 10 pseudo 13-PTNLD9-TUMOR_peak_30535 chr20 18568501 18568813 + 7.49990 NA 5' UTR (NM_080820, exon 1 of 6) 5' UTR (NM_080820, exon 1 of 6) 101 NM_080820 92675 Hs.659442 NM_080820 ENSG00000125821 DTD1 C20orf88|DUE-B|DUEB|HARS2|bA379J5.3|bA555E18.1|pqn-68 D-tyrosyl-tRNA deacylase 1 protein-coding 13-PTNLD9-TUMOR_peak_21315 chr17 45728005 45728131 + 7.44661 NA promoter-TSS (NM_001276453) promoter-TSS (NM_001276453) -494 NM_001276453 3837 Hs.532793 NM_002265 KPNB1 IMB1|IPO1|IPOB|Impnb|NTF97 karyopherin (importin) beta 1 protein-coding 13-PTNLD9-TUMOR_peak_19561 chr16 67143655 67144039 + 7.43098 NA promoter-TSS (NM_025187) promoter-TSS (NM_025187) -68 NM_025187 80262 Hs.513666 NM_025187 HPRD:17460 C16orf70 C16orf6|LIN10|lin-10 chromosome 16 open reading frame 70 protein-coding 13-PTNLD9-TUMOR_peak_26176 chr2 14772746 14772886 + 7.39670 NA promoter-TSS (NM_145175) promoter-TSS (NM_145175) 6 NM_145175 151354 Hs.260855 NM_145175 HPRD:17647 FAM84A NSE1|PP11517 family with sequence similarity 84, member A protein-coding 13-PTNLD9-TUMOR_peak_1466 chr1 43833435 43833640 + 7.39554 NA promoter-TSS (NM_001256399) promoter-TSS (NM_001256399) -128 NM_001256399 64834 Hs.25597 NM_022821 HPRD:10935 ELOVL1 Ssc1 ELOVL fatty acid elongase 1 protein-coding 13-PTNLD9-TUMOR_peak_4931 chr1 201208775 201208869 + 7.38896 NA Intergenic L1PA3|LINE|L1 -43758 NM_001005337 5317 Hs.497350 NM_000299 HPRD:03579 PKP1 B6P plakophilin 1 protein-coding 13-PTNLD9-TUMOR_peak_53845 chr9 88357047 88357200 + 7.31511 NA promoter-TSS (NM_001286717) promoter-TSS (NM_001286717) -179 NM_015239 23287 Hs.719980 NM_015239 HPRD:08442 AGTPBP1 CCP1|NNA1 ATP/GTP binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_2742 chr1 109633479 109633598 + 7.28740 NA intron (NM_020141, intron 1 of 2) CpG 135 NM_020141 56900 Hs.82933 NM_020141 TMEM167B C1orf119 transmembrane protein 167B protein-coding 13-PTNLD9-TUMOR_peak_53369 chr9 46154797 46154936 + 7.26674 NA Intergenic Intergenic 37923 NR_103714 100289124 Hs.567050 NM_001024608 ENSG00000237198 FAM27E2 FAM27E1 family with sequence similarity 27, member E2 ncRNA 13-PTNLD9-TUMOR_peak_14344 chr12 132674130 132674469 + 7.26504 NA Intergenic CpG 16274 NM_021808 50614 Hs.301062 NM_021808 ENSG00000182870 GALNT9 GALNAC-T9|GALNACT9 polypeptide N-acetylgalactosaminyltransferase 9 protein-coding 13-PTNLD9-TUMOR_peak_15311 chr14 23356049 23356154 + 7.25111 NA exon (NM_173527, exon 5 of 5) exon (NM_173527, exon 5 of 5) 3669 NM_173527 161253 Hs.444911 NM_173527 HPRD:08248 REM2 - RAS (RAD and GEM)-like GTP binding 2 protein-coding 13-PTNLD9-TUMOR_peak_25838 chr19 59097963 59098065 + 7.22358 NA Intergenic (TTAGGG)n|Simple_repeat|Simple_repeat 11248 NR_026052 65996 Hs.541177 NM_023939 HPRD:14527 CENPBD1P1 - CENPBD1 pseudogene 1 pseudo 13-PTNLD9-TUMOR_peak_53996 chr9 94711173 94711272 + 7.14433 NA intron (NM_004560, intron 1 of 8) CpG 1222 NM_004560 4920 Hs.98255 NM_004560 HPRD:03822 ROR2 BDB|BDB1|NTRKR2 receptor tyrosine kinase-like orphan receptor 2 protein-coding 13-PTNLD9-TUMOR_peak_16000 chr14 64319385 64319717 + 7.14266 NA promoter-TSS (NM_015180) promoter-TSS (NM_015180) -132 NM_015180 23224 Hs.745014 NM_015180 HPRD:09763 SYNE2 EDMD5|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing, nuclear envelope 2 protein-coding 13-PTNLD9-TUMOR_peak_34772 chr3 58275649 58275872 + 7.10460 NA intron (NM_020676, intron 8 of 8) SVA_D|Other|Other -16212 NR_049758 11102 Hs.446320 NM_007042 HPRD:18001 RPP14 P14 ribonuclease P/MRP 14kDa subunit protein-coding 13-PTNLD9-TUMOR_peak_44066 chr6 20403696 20403792 + 7.09980 NA promoter-TSS (NM_001243076) promoter-TSS (NM_001243076) -166 NM_001243076 1871 Hs.269408 NM_001949 HPRD:02693 E2F3 E2F-3 E2F transcription factor 3 protein-coding 13-PTNLD9-TUMOR_peak_16612 chr14 102783267 102783541 + 7.06828 NA promoter-TSS (NM_001267827) promoter-TSS (NM_001267827) -310 NM_001267827 55778 Hs.743359 NM_018335 HPRD:18532 ZNF839 C14orf131 zinc finger protein 839 protein-coding 13-PTNLD9-TUMOR_peak_35763 chr3 127023018 127023299 + 7.04959 NA Intergenic Intergenic 86355 NR_110147 101927123 Hs.526761 NR_110147 ENSG00000244215 LOC101927123 - uncharacterized LOC101927123 ncRNA 13-PTNLD9-TUMOR_peak_4951 chr1 201368448 201368719 + 7.01741 NA promoter-TSS (NM_005558) promoter-TSS (NM_005558) 86 NM_005558 3898 Hs.519035 NM_005558 HPRD:03815 LAD1 LadA ladinin 1 protein-coding 13-PTNLD9-TUMOR_peak_9593 chr11 40065338 40065432 + 6.98680 NA Intergenic L1PA5|LINE|L1 249295 NR_047674 57689 Hs.745123 NM_020929 HPRD:12303 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 13-PTNLD9-TUMOR_peak_20486 chr17 10633294 10633443 + 6.98680 NA 5' UTR (NM_001004313, exon 1 of 6) 5' UTR (NM_001004313, exon 1 of 6) 274 NR_073456 101101775 Hs.569782 NR_073455 ENSG00000263400 TMEM220-AS1 - TMEM220 antisense RNA 1 ncRNA 13-PTNLD9-TUMOR_peak_29921 chr2 224821892 224822145 + 6.98680 NA promoter-TSS (NM_022915) promoter-TSS (NM_022915) -103 NM_022915 65080 Hs.203559 NM_022915 HPRD:14763 MRPL44 COXPD16|L44MT|MRP-L44 mitochondrial ribosomal protein L44 protein-coding 13-PTNLD9-TUMOR_peak_20234 chr17 1733089 1733352 + 6.98032 NA promoter-TSS (NM_052928) promoter-TSS (NM_052928) -45 NM_052928 114826 Hs.514602 NM_052928 HPRD:18079 SMYD4 ZMYND21 SET and MYND domain containing 4 protein-coding 13-PTNLD9-TUMOR_peak_5824 chr1 231558178 231558465 + 6.97495 NA 5' UTR (NM_022051, exon 1 of 5) 5' UTR (NM_022051, exon 1 of 5) 2469 NM_022051 54583 Hs.444450 NM_022051 HPRD:06971 EGLN1 C1orf12|ECYT3|HIF-PH2|HIFPH2|HPH-2|HPH2|PHD2|SM20|ZMYND6 egl-9 family hypoxia-inducible factor 1 protein-coding 13-PTNLD9-TUMOR_peak_39055 chr4 109571691 109571819 + 6.94703 NA promoter-TSS (NM_021227) promoter-TSS (NM_021227) 14 NM_001267817 58505 Hs.445803 NM_021227 HPRD:13120 OSTC - oligosaccharyltransferase complex subunit (non-catalytic) protein-coding 13-PTNLD9-TUMOR_peak_53349 chr9 45033374 45033513 + 6.94287 NA Intergenic Intergenic -28153 NR_121606 102723709 Hs.743015 NR_121606 LOC102723709 - uncharacterized LOC102723709 ncRNA 13-PTNLD9-TUMOR_peak_7821 chr10 79532824 79533095 + 6.93066 NA Intergenic LTR13A|LTR|ERVK -135382 NM_001271522 3778 Hs.144795 NM_002247 HPRD:15967 KCNMA1 BKTM|KCa1.1|MaxiK|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|mSLO1 potassium large conductance calcium-activated channel, subfamily M, alpha member 1 protein-coding 13-PTNLD9-TUMOR_peak_54385 chr9 111696653 111696956 + 6.92044 NA promoter-TSS (NM_003640) promoter-TSS (NM_003640) 131 NM_017832 54942 Hs.29276 NM_017832 HPRD:07911 FAM206A C9orf6|CG-8 family with sequence similarity 206, member A protein-coding 13-PTNLD9-TUMOR_peak_8711 chr11 175728 175943 + 6.88197 NA Intergenic (CCCTAA)n|Simple_repeat|Simple_repeat -17245 NM_001097610 653486 Hs.127059 NM_001097610 LOC653486 - secretoglobin, family 1C, member 1-like protein-coding 13-PTNLD9-TUMOR_peak_38008 chr4 13486009 13486134 + 6.84546 NA promoter-TSS (NM_001159601) promoter-TSS (NM_001159601) -82 NM_001159601 9364 Hs.656060 NM_004249 HPRD:06699 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 13-PTNLD9-TUMOR_peak_9982 chr11 60961879 60962154 + 6.78214 NA Intergenic Intergenic -8951 NM_001079807 643834 Hs.601055 NM_001079807 PGA3 - pepsinogen 3, group I (pepsinogen A) protein-coding 13-PTNLD9-TUMOR_peak_44987 chr6 41701854 41702138 + 6.77870 NA intron (NM_007162, intron 1 of 9) CpG 143 NM_001271945 7942 Hs.485360 NM_007162 HPRD:02847 TFEB ALPHATFEB|BHLHE35|TCFEB transcription factor EB protein-coding 13-PTNLD9-TUMOR_peak_37804 chr4 6979245 6979539 + 6.77202 NA intron (NM_001113361, intron 3 of 13) SVA_D|Other|Other -9497 NM_001113363 57533 Hs.518611 NM_020773 HPRD:11623 TBC1D14 - TBC1 domain family, member 14 protein-coding 13-PTNLD9-TUMOR_peak_16704 chr14 105987246 105987631 + 6.76074 NA Intergenic Intergenic -5515 NM_025268 80757 Hs.157527 NM_025268 HPRD:14652 TMEM121 hole transmembrane protein 121 protein-coding 13-PTNLD9-TUMOR_peak_26082 chr2 10184428 10184617 + 6.73009 NA 5' UTR (NM_001177718, exon 1 of 4) 5' UTR (NM_001177718, exon 1 of 4) 150 NM_001177718 8462 Hs.12229 NM_003597 HPRD:04488 KLF11 FKLF|FKLF1|MODY7|TIEG2|Tieg3 Kruppel-like factor 11 protein-coding 13-PTNLD9-TUMOR_peak_1411 chr1 42846384 42846478 + 6.71932 NA promoter-TSS (NM_173642) promoter-TSS (NM_173642) -37 NM_173642 284716 Hs.420244 NM_173642 HPRD:14656 RIMKLA FAM80A|NAAGS|NAAGS-II ribosomal modification protein rimK-like family member A protein-coding 13-PTNLD9-TUMOR_peak_18848 chr16 27280038 27280170 + 6.68574 NA promoter-TSS (NM_145080) promoter-TSS (NM_145080) 9 NM_145080 197370 Hs.284295 NM_145080 HPRD:17648 NSMCE1 NSE1 non-SMC element 1 homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_29337 chr2 190406931 190407110 + 6.60480 NA Intergenic Intergenic 38517 NM_014585 30061 Hs.643005 NM_014585 HPRD:05229 SLC40A1 FPN1|HFE4|IREG1|MST079|MTP1|SLC11A3 solute carrier family 40 (iron-regulated transporter), member 1 protein-coding 13-PTNLD9-TUMOR_peak_17816 chr15 83023964 83024058 + 6.56973 NA non-coding (NR_004847, exon 1 of 5) non-coding (NR_004847, exon 1 of 5) 170 NR_004847 100134869 Hs.735222 NR_004847 UBE2Q2P2 UBE2Q2P3|UBE2QP2 ubiquitin-conjugating enzyme E2Q family member 2 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_23013 chr18 42259021 42259124 + 6.55996 NA Intergenic CpG -1066 NM_001130110 26040 Hs.435458 NM_015559 HPRD:10224 SETBP1 SEB SET binding protein 1 protein-coding 13-PTNLD9-TUMOR_peak_15256 chr14 21183885 21183996 + 6.47847 NA Intergenic AluY|SINE|Alu 27004 NM_194431 6038 Hs.283749 NM_002937 HPRD:03018 RNASE4 RAB1|RNS4 ribonuclease, RNase A family, 4 protein-coding 13-PTNLD9-TUMOR_peak_39120 chr4 114682904 114683037 + 6.38179 NA 5' UTR (NM_172128, exon 1 of 18) 5' UTR (NM_172128, exon 1 of 18) 113 NM_172127 817 Hs.144114 NM_001221 HPRD:09653 CAMK2D CAMKD calcium/calmodulin-dependent protein kinase II delta protein-coding 13-PTNLD9-TUMOR_peak_33848 chr3 13549357 13549661 + 6.34817 NA Intergenic Intergenic 27665 NM_001136041 79885 Hs.744132 NM_024827 HPRD:09146 HDAC11 HD11 histone deacetylase 11 protein-coding 13-PTNLD9-TUMOR_peak_5876 chr1 233749612 233749731 + 6.34127 NA promoter-TSS (NM_002245) promoter-TSS (NM_002245) -79 NM_002245 3775 Hs.208544 NM_002245 HPRD:03447 KCNK1 DPK|HOHO|K2P1|K2p1.1|KCNO1|TWIK-1|TWIK1 potassium channel, subfamily K, member 1 protein-coding 13-PTNLD9-TUMOR_peak_55313 chrUn_gl000224 500 686 + 6.30115 NA NA Intergenic NA NA 13-PTNLD9-TUMOR_peak_50643 chr8 38243880 38244020 + 6.25151 NA promoter-TSS (NM_001199660) promoter-TSS (NM_001199660) -9 NM_001286821 137994 Hs.696457 NM_144652 HPRD:08060 LETM2 - leucine zipper-EF-hand containing transmembrane protein 2 protein-coding 13-PTNLD9-TUMOR_peak_51090 chr8 67874824 67875209 + 6.25010 NA promoter-TSS (NM_001193502) promoter-TSS (NM_001193502) -191 NM_001193502 100129654 Hs.120040 NM_001193502 ENSG00000261787 TCF24 TCF-24|bHLHa25 transcription factor 24 protein-coding 13-PTNLD9-TUMOR_peak_25672 chr19 55685559 55685702 + 6.12542 NA intron (NM_001297774, intron 6 of 6) intron (NM_001297774, intron 6 of 6) 5181 NM_001297774 6861 Hs.631566 NM_003180 SYT5 - synaptotagmin V protein-coding 13-PTNLD9-TUMOR_peak_16625 chr14 103523856 103524058 + 6.03142 NA promoter-TSS (NM_006035) promoter-TSS (NM_006035) -215 NM_006035 9578 Hs.654634 NM_006035 HPRD:08516 CDC42BPB MRCKB CDC42 binding protein kinase beta (DMPK-like) protein-coding 13-PTNLD9-TUMOR_peak_45789 chr6 99395716 99395835 + 5.97975 NA non-coding (NR_103836, exon 1 of 8) non-coding (NR_103836, exon 1 of 8) 107 NM_012160 26235 Hs.536850 NM_012160 HPRD:05738 FBXL4 FBL4|FBL5|MTDPS13 F-box and leucine-rich repeat protein 4 protein-coding 13-PTNLD9-TUMOR_peak_24643 chr19 30432851 30433154 + 5.89265 NA promoter-TSS (NM_003796) promoter-TSS (NM_003796) -144 NR_045557 8725 Hs.466391 NM_003796 HPRD:11943 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1, prefoldin-like chaperone protein-coding 13-PTNLD9-TUMOR_peak_13563 chr12 98909054 98909384 + 5.88941 NA promoter-TSS (NM_003276) promoter-TSS (NM_003276) -132 NM_001032284 7112 Hs.11355 NM_003276 HPRD:01777 TMPO CMD1T|LAP2|LEMD4|PRO0868|TP thymopoietin protein-coding 13-PTNLD9-TUMOR_peak_54462 chr9 115095695 115095890 + 5.87883 NA promoter-TSS (NM_001244898) promoter-TSS (NM_001244898) 152 NM_005156 9991 Hs.269988 NM_005156 HPRD:09603 PTBP3 ROD1 polypyrimidine tract binding protein 3 protein-coding 13-PTNLD9-TUMOR_peak_5642 chr1 226374376 226374501 + 5.87731 NA promoter-TSS (NM_022735) promoter-TSS (NM_022735) -15 NM_022735 64746 Hs.520207 NM_022735 HPRD:08432 ACBD3 GCP60|GOCAP1|GOLPH1|PAP7 acyl-CoA binding domain containing 3 protein-coding 13-PTNLD9-TUMOR_peak_51355 chr8 98307927 98308080 + 5.81531 NA intron (NR_125390, intron 2 of 2) L1PA2|LINE|L1 -17827 NM_033512 85453 Hs.173094 NM_033512 HPRD:15576 TSPYL5 - TSPY-like 5 protein-coding 13-PTNLD9-TUMOR_peak_14357 chr12 133287141 133287235 + 5.77073 NA promoter-TSS (NM_001170543) promoter-TSS (NM_001170543) -205 NM_138575 192111 Hs.102558 NM_138575 HPRD:14681 PGAM5 BXLBV68 phosphoglycerate mutase family member 5 protein-coding 13-PTNLD9-TUMOR_peak_45148 chr6 44233184 44233299 + 5.73775 NA exon (NM_004556, exon 1 of 6) exon (NM_004556, exon 1 of 6) 284 NM_004556 4794 Hs.458276 NM_004556 HPRD:05181 NFKBIE IKBE nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon protein-coding 13-PTNLD9-TUMOR_peak_14358 chr12 133287344 133287438 + 5.70444 NA promoter-TSS (NM_001170543) promoter-TSS (NM_001170543) -2 NM_138575 192111 Hs.102558 NM_138575 HPRD:14681 PGAM5 BXLBV68 phosphoglycerate mutase family member 5 protein-coding 13-PTNLD9-TUMOR_peak_36262 chr3 143690234 143690387 + 5.65287 NA promoter-TSS (NM_173552) promoter-TSS (NM_173552) -330 NM_173552 205428 Hs.288954 NM_173552 HPRD:14559 C3orf58 DIA1|GoPro49|HASF chromosome 3 open reading frame 58 protein-coding 13-PTNLD9-TUMOR_peak_7023 chr10 39107973 39108131 + 5.63802 NA Intergenic (CATTC)n|Satellite|Satellite 118325 NR_045000 399746 Hs.742607 NR_045000 ENSG00000227264 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 13-PTNLD9-TUMOR_peak_42088 chr5 133450212 133450352 + 5.57197 NA promoter-TSS (NM_003202) promoter-TSS (NM_003202) -120 NM_003202 6932 Hs.573153 NM_003202 HPRD:01797 TCF7 TCF-1 transcription factor 7 (T-cell specific, HMG-box) protein-coding 13-PTNLD9-TUMOR_peak_34300 chr3 39458987 39459235 + 5.51673 NA Intergenic LTR13|LTR|ERVK 6566 NR_002324 6044 Hs.449909 NR_002324 SNORA62 E2|E2-1|RNE2|RNU108 small nucleolar RNA, H/ACA box 62 snoRNA 13-PTNLD9-TUMOR_peak_20557 chr17 17399587 17399695 + 5.51497 NA promoter-TSS (NM_016084) promoter-TSS (NM_016084) 68 NM_016084 51655 Hs.25829 NM_016084 HPRD:08958 RASD1 AGS1|DEXRAS1|MGC:26290 RAS, dexamethasone-induced 1 protein-coding 13-PTNLD9-TUMOR_peak_15837 chr14 55595779 55595940 + 5.44630 NA promoter-TSS (NM_002306) promoter-TSS (NM_002306) -76 NM_001177388 3958 Hs.531081 NM_002306 HPRD:01090 LGALS3 CBP35|GAL3|GALBP|GALIG|L31|LGALS2|MAC2 lectin, galactoside-binding, soluble, 3 protein-coding 13-PTNLD9-TUMOR_peak_40277 chr5 9544711 9544839 + 5.42166 NA intron (NM_003966, intron 1 of 22) CpG 1458 NM_003966 9037 Hs.27621 NM_003966 HPRD:10219 SEMA5A SEMAF|semF sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A protein-coding 13-PTNLD9-TUMOR_peak_56150 chrX 73756369 73756532 + 5.22299 NA Intergenic CpG 78011 NM_183353 51132 Hs.653288 NM_016120 HPRD:02304 RLIM NY-REN-43|RNF12 ring finger protein, LIM domain interacting protein-coding 13-PTNLD9-TUMOR_peak_42079 chr5 133340208 133340830 + 5.21571 NA non-coding (NR_036625, exon 1 of 9) non-coding (NR_036625, exon 1 of 9) 138 NR_036624 7416 Hs.519320 NM_003374 HPRD:05137 VDAC1 PORIN|VDAC-1 voltage-dependent anion channel 1 protein-coding 13-PTNLD9-TUMOR_peak_24234 chr19 15567747 15567923 + 5.18504 NA intron (NM_022904, intron 9 of 17) intron (NM_022904, intron 9 of 17) -7073 NM_021241 58525 Hs.442138 NM_021241 ENSG00000011451 WIZ ZNF803 widely interspaced zinc finger motifs protein-coding 13-PTNLD9-TUMOR_peak_5379 chr1 213324588 213324790 + 5.17692 NA intron (NM_001287219, intron 7 of 14) intron (NM_001287219, intron 7 of 14) 100114 NM_001287219 26750 Hs.591416 NM_012424 HPRD:10204 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase, 52kDa, polypeptide 1 protein-coding 13-PTNLD9-TUMOR_peak_39250 chr4 123031286 123031440 + 5.12097 NA Intergenic L1PA3|LINE|L1 -60395 NM_015312 84162 Hs.408142 NM_015312 ENSG00000138688 KIAA1109 FSA|Tweek KIAA1109 protein-coding 13-PTNLD9-TUMOR_peak_8459 chr10 121410848 121411094 + 5.11180 NA promoter-TSS (NM_004281) promoter-TSS (NM_004281) 89 NM_004281 9531 Hs.523309 NM_004281 HPRD:04860 BAG3 BAG-3|BIS|CAIR-1|MFM6 BCL2-associated athanogene 3 protein-coding 13-PTNLD9-TUMOR_peak_16728 chr15 20306146 20306706 + 5.10718 NA Intergenic (GCTG)n|Simple_repeat|Simple_repeat -181571 NR_038836 646096 Hs.448789 NR_038836 CHEK2P2 - checkpoint kinase 2 pseudogene 2 pseudo 13-PTNLD9-TUMOR_peak_53905 chr9 91003547 91003654 + 5.09396 NA intron (NM_006717, intron 1 of 5) CpG 303 NM_006717 10927 Hs.146804 NM_006717 HPRD:18096 SPIN1 SPIN spindlin 1 protein-coding 13-PTNLD9-TUMOR_peak_29487 chr2 200715893 200716044 + 5.07116 NA promoter-TSS (NR_034096) promoter-TSS (NR_034096) -72 NR_034096 348751 Hs.734578 NR_034096 ENSG00000226124 FTCDNL1 FONG formiminotransferase cyclodeaminase N-terminal like ncRNA 13-PTNLD9-TUMOR_peak_8737 chr11 535649 535769 + 5.04839 NA promoter-TSS (NM_005343) promoter-TSS (NM_005343) -159 NM_001130442 3265 Hs.37003 NM_005343 HPRD:01813 HRAS C-BAS/HAS|C-H-RAS|C-HA-RAS1|CTLO|H-RASIDX|HAMSV|HRAS1|RASH1|p21ras Harvey rat sarcoma viral oncogene homolog protein-coding 13-PTNLD9-TUMOR_peak_11844 chr12 3186022 3186426 + 5.04603 NA promoter-TSS (NM_001168320) promoter-TSS (NM_001168320) -297 NM_001168320 10867 Hs.504517 NM_006675 HPRD:14823 TSPAN9 NET-5|NET5|PP1057 tetraspanin 9 protein-coding 13-PTNLD9-TUMOR_peak_55097 chr9 141054234 141054390 + 5.01205 NA intron (NR_027156, intron 1 of 4) (TTAGGG)n|Simple_repeat|Simple_repeat 9747 NR_027156 643224 Hs.551805 NR_027156 TUBBP5 - tubulin, beta pseudogene 5 pseudo 13-PTNLD9-TUMOR_peak_11270 chr11 113906908 113907046 + 4.97236 NA Intergenic CpG -23454 NM_006006 7704 Hs.591945 NM_006006 HPRD:11762 ZBTB16 PLZF|ZNF145 zinc finger and BTB domain containing 16 protein-coding 13-PTNLD9-TUMOR_peak_24701 chr19 34269109 34269208 + 4.96796 NA Intergenic CpG -18593 NM_001129994 79047 Hs.221873 NM_024076 HPRD:13765 KCTD15 - potassium channel tetramerization domain containing 15 protein-coding 13-PTNLD9-TUMOR_peak_31747 chr20 59777226 59777342 + 4.93697 NA Intergenic Intergenic -50198 NM_001794 1002 Hs.473231 NM_001794 HPRD:04304 CDH4 CAD4|R-CAD|RCAD cadherin 4, type 1, R-cadherin (retinal) protein-coding 13-PTNLD9-TUMOR_peak_23717 chr19 4328547 4328720 + 4.88872 NA intron (NM_001013841, intron 6 of 12) C-rich|Low_complexity|Low_complexity 10214 NM_001013841 55620 Hs.194385 NM_017720 HPRD:07430 STAP2 BKS signal transducing adaptor family member 2 protein-coding 13-PTNLD9-TUMOR_peak_31778 chr20 61273625 61273806 + 4.86840 NA promoter-TSS (NM_016354) promoter-TSS (NM_016354) -82 NM_016354 28231 Hs.235782 NM_016354 HPRD:11582 SLCO4A1 OATP-E|OATP1|OATP4A1|OATPE|OATPRP1|POAT|SLC21A12 solute carrier organic anion transporter family, member 4A1 protein-coding 13-PTNLD9-TUMOR_peak_49793 chr7 155159460 155159930 + 4.83088 NA intron (NR_103545, intron 1 of 5) SVA_E|Other|Other 933 NR_103545 338436 Hs.521326 NR_103545 ENSG00000204960 BLACE - B-cell acute lymphoblastic leukemia expressed ncRNA 13-PTNLD9-TUMOR_peak_9722 chr11 47291429 47291776 + 4.82522 NA promoter-TSS (NM_130476) promoter-TSS (NM_130476) -69 NM_130476 8567 Hs.82548 NM_003682 HPRD:04664 MADD DENN|IG20|RAB3GEP MAP-kinase activating death domain protein-coding 13-PTNLD9-TUMOR_peak_27504 chr2 87625466 87625562 + 4.74977 NA Intergenic (CAGC)n|Simple_repeat|Simple_repeat -129460 NR_024204 112597 Hs.652166 NM_052871 HPRD:14654 LINC00152 C2orf59|NCRNA00152 long intergenic non-protein coding RNA 152 ncRNA 13-PTNLD9-TUMOR_peak_32729 chr22 19189937 19190127 + 4.69748 NA intron (NM_007098, intron 22 of 32) intron (NM_007098, intron 22 of 32) -23656 NR_046298 6576 Hs.111024 NM_005984 HPRD:01832 SLC25A1 CTP|D2L2AD|SEA|SLC20A3 solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1 protein-coding 13-PTNLD9-TUMOR_peak_11396 chr11 119076958 119077052 + 4.69748 NA promoter-TSS (NM_005188) promoter-TSS (NM_005188) 19 NM_005188 867 Hs.504096 NM_005188 HPRD:01320 CBL C-CBL|CBL2|FRA11B|NSLL|RNF55 Cbl proto-oncogene, E3 ubiquitin protein ligase protein-coding 13-PTNLD9-TUMOR_peak_40455 chr5 17529037 17529211 + 4.65672 NA Intergenic Intergenic -141705 NR_033975 401177 Hs.508311 NR_033975 ENSG00000250822 LOC401177 - uncharacterized LOC401177 ncRNA 13-PTNLD9-TUMOR_peak_21728 chr17 61524058 61524301 + 4.63896 NA promoter-TSS (NM_001915) promoter-TSS (NM_001915) -457 NM_001915 1534 Hs.355264 NM_001915 HPRD:02485 CYB561 CYB561A1|FRRS2 cytochrome b561 protein-coding 13-PTNLD9-TUMOR_peak_56126 chrX 71398334 71398460 + 4.60655 NA Intergenic SVA_E|Other|Other -3129 NM_001170747 5303 Hs.655623 NM_006223 HPRD:02219 PIN4 EPVH|PAR14|PAR17 protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) protein-coding 13-PTNLD9-TUMOR_peak_53717 chr9 80646866 80647101 + 4.57263 NA promoter-TSS (NM_002072) promoter-TSS (NM_002072) -618 NM_002072 2776 Hs.269782 NM_002072 GNAQ CMC1|G-ALPHA-q|GAQ|SWS guanine nucleotide binding protein (G protein), q polypeptide protein-coding 13-PTNLD9-TUMOR_peak_49859 chr7 158141040 158141166 + 4.51596 NA intron (NM_130842, intron 1 of 21) (CCCCAG)n|Simple_repeat|Simple_repeat 184402 NR_030325 693180 NR_030325 MIR595 MIRN595|hsa-mir-595 microRNA 595 ncRNA 13-PTNLD9-TUMOR_peak_32642 chr22 17046381 17046492 + 4.47574 NA Intergenic (CAGC)n|Simple_repeat|Simple_repeat 27264 NM_014406 150160 Hs.128342 NM_014406 HPRD:16708 CCT8L2 CESK1 chaperonin containing TCP1, subunit 8 (theta)-like 2 protein-coding 13-PTNLD9-TUMOR_peak_5209 chr1 205454590 205454863 + 4.45073 NA Intergenic Intergenic -18958 NM_212503 5129 Hs.445402 NM_002596 HPRD:01354 CDK18 PCTAIRE|PCTAIRE3|PCTK3 cyclin-dependent kinase 18 protein-coding 13-PTNLD9-TUMOR_peak_14268 chr12 126467761 126467891 + 4.28140 NA promoter-TSS (NR_034132) promoter-TSS (NR_034132) 94 NR_034132 400084 Hs.156191 NR_034132 ENSG00000249267 LINC00939 - long intergenic non-protein coding RNA 939 ncRNA 13-PTNLD9-TUMOR_peak_18165 chr16 771362 771478 + 4.27260 NA exon (NM_023933, exon 1 of 5) exon (NM_023933, exon 1 of 5) 278 NM_001271285 65990 Hs.166244 NM_023933 HPRD:14500 FAM173A C16orf24 family with sequence similarity 173, member A protein-coding 13-PTNLD9-TUMOR_peak_16758 chr15 21315675 21315941 + 4.24341 NA Intergenic (GCTG)n|Simple_repeat|Simple_repeat 170041 NR_040094 348120 Hs.116287 NR_040094 ENSG00000258710 LINC01193 CT60 long intergenic non-protein coding RNA 1193 ncRNA 13-PTNLD9-TUMOR_peak_30018 chr2 232545797 232545946 + 4.20128 NA Intergenic CpG -27364 NM_002823 5757 Hs.459927 NM_002823 HPRD:01778 PTMA TMSA prothymosin, alpha protein-coding 13-PTNLD9-TUMOR_peak_28198 chr2 118771534 118771805 + 4.14643 NA promoter-TSS (NM_019044) promoter-TSS (NM_019044) 70 NM_019044 54520 Hs.107845 NM_019044 HPRD:08557 CCDC93 - coiled-coil domain containing 93 protein-coding 13-PTNLD9-TUMOR_peak_43503 chr6 3064492 3064620 + 4.14432 NA Intergenic Intergenic -12502 NM_003804 8737 Hs.519842 NM_003804 HPRD:04583 RIPK1 RIP|RIP1 receptor (TNFRSF)-interacting serine-threonine kinase 1 protein-coding 13-PTNLD9-TUMOR_peak_22619 chr18 11981439 11981542 + 4.09080 NA promoter-TSS (NM_014214) promoter-TSS (NM_014214) 63 NM_014214 3613 Hs.743311 NM_014214 HPRD:09329 IMPA2 - inositol(myo)-1(or 4)-monophosphatase 2 protein-coding 13-PTNLD9-TUMOR_peak_19065 chr16 31191036 31191200 + 4.09080 NA promoter-TSS (NM_004960) promoter-TSS (NM_004960) -313 NR_028388 2521 Hs.46894 NM_004960 HPRD:00660 FUS ALS6|ETM4|FUS1|HNRNPP2|POMP75|TLS FUS RNA binding protein protein-coding 13-PTNLD9-TUMOR_peak_40637 chr5 37371493 37371613 + 4.07873 NA promoter-TSS (NM_153485) promoter-TSS (NM_153485) -325 NM_001278312 9631 Hs.547696 NM_004298 HPRD:05984 NUP155 ATFB15|N155 nucleoporin 155kDa protein-coding 13-PTNLD9-TUMOR_peak_43362 chr5 180688037 180688169 + 4.05716 NA promoter-TSS (NR_102760) promoter-TSS (NR_102760) 16 NM_032765 84851 Hs.458412 NM_032765 TRIM52 RNF102 tripartite motif containing 52 protein-coding 13-PTNLD9-TUMOR_peak_14613 chr13 39261004 39261327 + 4.05716 NA promoter-TSS (NM_207361) promoter-TSS (NM_207361) -8 NM_207361 341640 Hs.253994 NM_207361 HPRD:10602 FREM2 - FRAS1 related extracellular matrix protein 2 protein-coding 13-PTNLD9-TUMOR_peak_55487 chrX 2846815 2846909 + 3.99442 NA intron (NM_001669, intron 1 of 9) CpG 554 NM_001669 414 Hs.528631 NM_001669 HPRD:02048 ARSD ASD arylsulfatase D protein-coding 13-PTNLD9-TUMOR_peak_11389 chr11 118965696 118965840 + 3.76485 NA exon (NM_002105, exon 1 of 1) exon (NM_002105, exon 1 of 1) 409 NM_002105 3014 Hs.477879 NM_002105 HPRD:03465 H2AFX H2A.X|H2A/X|H2AX H2A histone family, member X protein-coding 13-PTNLD9-TUMOR_peak_16126 chr14 69259678 69259903 + 3.73996 NA 5' UTR (NM_004926, exon 1 of 2) 5' UTR (NM_004926, exon 1 of 2) 841 NM_004926 677 Hs.85155 NM_004926 HPRD:03041 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein-like 1 protein-coding 13-PTNLD9-TUMOR_peak_7066 chr10 42393029 42393132 + 3.39026 NA Intergenic HSATII|Satellite|Satellite 470413 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 13-PTNLD9-TUMOR_peak_28674 chr2 148602015 148602222 + 3.33057 NA promoter-TSS (NM_001616) promoter-TSS (NM_001616) 32 NM_001278579 92 Hs.470174 NM_001616 HPRD:00025 ACVR2A ACTRII|ACVR2 activin A receptor, type IIA protein-coding 13-PTNLD9-TUMOR_peak_50491 chr8 29208441 29208604 + 3.29237 NA promoter-TSS (NM_001394) promoter-TSS (NM_001394) -255 NM_001394 1846 Hs.417962 NM_001394 HPRD:04123 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 13-PTNLD9-TUMOR_peak_16379 chr14 81902790 81903115 + 3.21034 NA Intergenic CpG -9204 NM_001256430 85439 Hs.14248 NM_033104 HPRD:10531 STON2 STN2|STNB|STNB2 stonin 2 protein-coding 13-PTNLD9-TUMOR_peak_27422 chr2 85641109 85641248 + 3.21020 NA promoter-TSS (NM_001256139) promoter-TSS (NM_001256139) 19 NM_001256139 822 Hs.516155 NM_001747 HPRD:01088 CAPG AFCP|HEL-S-66|MCP capping protein (actin filament), gelsolin-like protein-coding 13-PTNLD9-TUMOR_peak_38315 chr4 49122469 49122619 + 3.15371 NA Intergenic (CATTC)n|Satellite|Satellite 133885 NM_001286791 80157 Hs.479703 NM_025087 HPRD:08638 CWH43 CWH43-C cell wall biogenesis 43 C-terminal homolog (S. cerevisiae) protein-coding 13-PTNLD9-TUMOR_peak_22194 chr17 77005769 77005882 + 2.77911 NA promoter-TSS (NM_001159773) promoter-TSS (NM_001159773) 74 NM_001159773 124583 Hs.8859 NM_138793 HPRD:13003 CANT1 DBQD|SCAN-1|SCAN1|SHAPY calcium activated nucleotidase 1 protein-coding Done annotating peaks file