Information for motif1


Reverse Opposite:

p-value:1e-32
log p-value:-7.591e+01
Information Content per bp:1.582
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif4.82%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets24.4 +/- 9.9bp
Average Position of motif in Background15.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0132.1_Hbp1_2/Jaspar

Match Rank:1
Score:0.72
Offset:-5
Orientation:reverse strand
Alignment:-----ACAGTGGGNACC
NNTNNACAATGGGANNN

MA0130.1_ZNF354C/Jaspar

Match Rank:2
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:ACAGTGGGNACC
---GTGGAT---

MA0143.3_Sox2/Jaspar

Match Rank:3
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-ACAGTGGGNACC
AACAAAGG-----

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--ACAGTGGGNACC
GAACAATGGN----

MA0077.1_SOX9/Jaspar

Match Rank:5
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--ACAGTGGGNACC
GAACAATGG-----

PB0091.1_Zbtb3_1/Jaspar

Match Rank:6
Score:0.60
Offset:-6
Orientation:reverse strand
Alignment:------ACAGTGGGNACC
NNNANTGCAGTGCNNTT-

MA0078.1_Sox17/Jaspar

Match Rank:7
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-ACAGTGGGNACC
GACAATGNN----

MA0515.1_Sox6/Jaspar

Match Rank:8
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---ACAGTGGGNACC
AAAACAATGG-----

PB0133.1_Hic1_2/Jaspar

Match Rank:9
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-ACAGTGGGNACC---
NNNNTTGGGCACNNCN

PB0195.1_Zbtb3_2/Jaspar

Match Rank:10
Score:0.60
Offset:-6
Orientation:reverse strand
Alignment:------ACAGTGGGNACC
NNNNTGCCAGTGATTG--