Information for motif19


Reverse Opposite:

p-value:1e-17
log p-value:-4.090e+01
Information Content per bp:1.736
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif4.49%
Number of Background Sequences with motif3.8
Percentage of Background Sequences with motif0.56%
Average Position of motif in Targets21.7 +/- 12.0bp
Average Position of motif in Background21.1 +/- 21.8bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0130.1_ZNF354C/Jaspar

Match Rank:1
Score:0.57
Offset:4
Orientation:forward strand
Alignment:AGCGATGCAC
----ATCCAC

Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:2
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--AGCGATGCAC---
SCAGYCADGCATGAC

PH0148.1_Pou3f3/Jaspar

Match Rank:3
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-AGCGATGCAC------
AAAATATGCATAATAAA

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:4
Score:0.54
Offset:1
Orientation:forward strand
Alignment:AGCGATGCAC-
-MTGATGCAAT

PB0044.1_Mtf1_1/Jaspar

Match Rank:5
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:AGCGATGCAC-------
-NNTTTGCACACGGCCC

PB0199.1_Zfp161_2/Jaspar

Match Rank:6
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-AGCGATGCAC---
NNGCNCTGCGCGGC

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:AGCGATGCAC---
-SSAATCCACANN

PB0208.1_Zscan4_2/Jaspar

Match Rank:8
Score:0.52
Offset:2
Orientation:forward strand
Alignment:AGCGATGCAC--------
--CGAAGCACACAAAATA

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:9
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:AGCGATGCAC-
-ATGATGCAAT

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.51
Offset:0
Orientation:forward strand
Alignment:AGCGATGCAC
NATGTTGCAA