Information for motif2


Reverse Opposite:

p-value:1e-29
log p-value:-6.891e+01
Information Content per bp:1.749
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif4.49%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.26%
Average Position of motif in Targets27.1 +/- 10.5bp
Average Position of motif in Background23.4 +/- 9.7bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0091.1_Zbtb3_1/Jaspar

Match Rank:1
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----SCMCTGCCYCCA-
AATCGCACTGCATTCCG

Sp1(Zf)/Promoter/Homer

Match Rank:2
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-SCMCTGCCYCCA
GGCCCCGCCCCC-

PB0057.1_Rxra_1/Jaspar

Match Rank:3
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-SCMCTGCCYCCA----
TGTCGTGACCCCTTAAT

POL003.1_GC-box/Jaspar

Match Rank:4
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--SCMCTGCCYCCA
NAGCCCCGCCCCCN

MA0597.1_THAP1/Jaspar

Match Rank:5
Score:0.60
Offset:3
Orientation:forward strand
Alignment:SCMCTGCCYCCA
---CTGCCCGCA

MA0079.3_SP1/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:SCMCTGCCYCCA
GCCCCGCCCCC-

PB0118.1_Esrra_2/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-SCMCTGCCYCCA----
NNNNTTGACCCCTNNNN

MA0504.1_NR2C2/Jaspar

Match Rank:8
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---SCMCTGCCYCCA
TGACCTCTGACCCCN

PB0157.1_Rara_2/Jaspar

Match Rank:9
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:SCMCTGCCYCCA----
NNCNTGACCCCGCTCT

MA0162.2_EGR1/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:forward strand
Alignment:SCMCTGCCYCCA--
CCCCCGCCCCCGCC