Information for motif22


Reverse Opposite:

p-value:1e-17
log p-value:-4.024e+01
Information Content per bp:1.792
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif3.82%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.32%
Average Position of motif in Targets27.9 +/- 13.4bp
Average Position of motif in Background14.5 +/- 2.6bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:1
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-AGAGTGCC-
TTGAGTGSTT

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:2
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--AGAGTGCC-
CTTGAGTGGCT

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:3
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--AGAGTGCC
CTYRAGTGSY

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:4
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-AGAGTGCC-
TTAAGTGCTT

PB0133.1_Hic1_2/Jaspar

Match Rank:5
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AGAGTGCC-------
GGGTGTGCCCAAAAGG

PB0139.1_Irf5_2/Jaspar

Match Rank:6
Score:0.59
Offset:-7
Orientation:forward strand
Alignment:-------AGAGTGCC
TTGACCGAGAATTCC

POL006.1_BREu/Jaspar

Match Rank:7
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AGAGTGCC
AGCGCGCC

PB0140.1_Irf6_2/Jaspar

Match Rank:8
Score:0.57
Offset:-7
Orientation:reverse strand
Alignment:-------AGAGTGCC
NNNACCGAGAGTNNN

MA0122.1_Nkx3-2/Jaspar

Match Rank:9
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-AGAGTGCC
TTAAGTGGA

PB0138.1_Irf4_2/Jaspar

Match Rank:10
Score:0.56
Offset:-7
Orientation:reverse strand
Alignment:-------AGAGTGCC
GNNACCGAGAATNNN