Information for motif23


Reverse Opposite:

p-value:1e-17
log p-value:-3.943e+01
Information Content per bp:1.642
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.99%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets26.5 +/- 11.5bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:1
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CCAGGACATCTC
NTCAAGGTCA----

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:2
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CCAGGACATCTC
BTCAAGGTCA----

MA0505.1_Nr5a2/Jaspar

Match Rank:3
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----CCAGGACATCTC
AAGTTCAAGGTCAGC--

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:4
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CCAGGACATCTC
NACAGGAAAT---

MA0592.1_ESRRA/Jaspar

Match Rank:5
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CCAGGACATCTC
CCAAGGTCACA--

MA0141.2_Esrrb/Jaspar

Match Rank:6
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CCAGGACATCTC
AGCTCAAGGTCA----

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:7
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CCAGGACATCTC
ANCAGGATGT---

MA0156.1_FEV/Jaspar

Match Rank:8
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CCAGGACATCTC
-CAGGAAAT---

PB0014.1_Esrra_1/Jaspar

Match Rank:9
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CCAGGACATCTC-
TATTCAAGGTCATGCGA

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CCAGGACATCTC
TCAAGGTCAN---