Information for motif26


Reverse Opposite:

p-value:1e-15
log p-value:-3.640e+01
Information Content per bp:1.739
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif2.82%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.26%
Average Position of motif in Targets24.4 +/- 12.8bp
Average Position of motif in Background31.6 +/- 12.2bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0048.1_NHLH1/Jaspar

Match Rank:1
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-CGCAGCCGAT-
NCGCAGCTGCGN

POL009.1_DCE_S_II/Jaspar

Match Rank:2
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CGCAGCCGAT
CACAGN----

POL010.1_DCE_S_III/Jaspar

Match Rank:3
Score:0.66
Offset:2
Orientation:forward strand
Alignment:CGCAGCCGAT
--CAGCC---

Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CGCAGCCGAT-
-NCAGCTGCTG

Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:5
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CGCAGCCGAT-
-HCAGCTGDTN

MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:6
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CGCAGCCGAT--
AGCAGCTGCTNN

SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CGCAGCCGAT
ANCAGCTG--

PB0003.1_Ascl2_1/Jaspar

Match Rank:8
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----CGCAGCCGAT---
NNNNAGCAGCTGCTGAN

Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer

Match Rank:9
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CGCAGCCGAT-
-ACAGCTGTTV

PB0206.1_Zic2_2/Jaspar

Match Rank:10
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CGCAGCCGAT--
CCACACAGCAGGAGA