Information for motif28


Reverse Opposite:

p-value:1e-15
log p-value:-3.640e+01
Information Content per bp:1.831
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif2.82%
Number of Background Sequences with motif0.5
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets24.6 +/- 12.7bp
Average Position of motif in Background31.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.1
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0029.1_Hic1_1/Jaspar

Match Rank:1
Score:0.75
Offset:-5
Orientation:reverse strand
Alignment:-----GTCGGCAT---
NGTAGGTTGGCATNNN

MA0117.1_Mafb/Jaspar

Match Rank:2
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--GTCGGCAT
NCGTCAGC--

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:3
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---GTCGGCAT
TGAGTCAGCA-

PB0041.1_Mafb_1/Jaspar

Match Rank:4
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----GTCGGCAT----
NCTANGTCAGCAAATTT

MA0161.1_NFIC/Jaspar

Match Rank:5
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GTCGGCAT
-TTGGCA-

PB0042.1_Mafk_1/Jaspar

Match Rank:6
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GTCGGCAT-----
AAGTCAGCANTTTTN

MA0496.1_MAFK/Jaspar

Match Rank:7
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----GTCGGCAT---
CTGAGTCAGCAATTT

MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GTCGGCAT----
HWWGTCAGCAWWTTT

MA0495.1_MAFF/Jaspar

Match Rank:9
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----GTCGGCAT-----
GCTGAGTCAGCAATTTTT

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GTCGGCAT
VBSYGTCTGG--