Information for motif3


Reverse Opposite:

p-value:1e-29
log p-value:-6.830e+01
Information Content per bp:1.671
Number of Target Sequences with motif33.0
Percentage of Target Sequences with motif5.48%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.38%
Average Position of motif in Targets25.7 +/- 12.7bp
Average Position of motif in Background34.9 +/- 11.1bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.21
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CTCAVVACASCM
CCAGGAACAG--

POL009.1_DCE_S_II/Jaspar

Match Rank:2
Score:0.67
Offset:5
Orientation:reverse strand
Alignment:CTCAVVACASCM
-----CACAGN-

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:3
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CTCAVVACASCM
NWAACCACADNN

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:4
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CTCAVVACASCM
-AAACCACAGC-

MA0511.1_RUNX2/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CTCAVVACASCM---
CAAACCACAAACCCC

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:6
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CTCAVVACASCM
NAAACCACAG--

PB0208.1_Zscan4_2/Jaspar

Match Rank:7
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CTCAVVACASCM----
CGAAGCACACAAAATA

MA0002.2_RUNX1/Jaspar

Match Rank:8
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CTCAVVACASCM
-AAACCACAGAN

MA0073.1_RREB1/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CTCAVVACASCM-------
CCCCAAACCACCCCCCCCCA

POL002.1_INR/Jaspar

Match Rank:10
Score:0.58
Offset:6
Orientation:forward strand
Alignment:CTCAVVACASCM--
------TCAGTCTT