Information for motif30


Reverse Opposite:

p-value:1e-14
log p-value:-3.343e+01
Information Content per bp:1.648
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif2.66%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.25%
Average Position of motif in Targets25.6 +/- 13.4bp
Average Position of motif in Background29.7 +/- 4.2bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0160.1_NR4A2/Jaspar

Match Rank:1
Score:0.62
Offset:3
Orientation:forward strand
Alignment:CAAGAGGCCACA
---AAGGTCAC-

MA0002.2_RUNX1/Jaspar

Match Rank:2
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:CAAGAGGCCACA---
----AAACCACAGAN

PB0134.1_Hnf4a_2/Jaspar

Match Rank:3
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CAAGAGGCCACA--
GGCAAAAGTCCAATAA

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:4
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CAAGAGGCCACA---
---NWAACCACADNN

PB0053.1_Rara_1/Jaspar

Match Rank:5
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CAAGAGGCCACA--
TCTCAAAGGTCACCTG

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CAAGAGGCCACA--
--SSAATCCACANN

MA0511.1_RUNX2/Jaspar

Match Rank:7
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:CAAGAGGCCACA------
---CAAACCACAAACCCC

MA0512.1_Rxra/Jaspar

Match Rank:8
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CAAGAGGCCACA
-CAAAGGTCAGA

MA0479.1_FOXH1/Jaspar

Match Rank:9
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CAAGAGGCCACA
-TCCAATCCACA

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:10
Score:0.54
Offset:3
Orientation:forward strand
Alignment:CAAGAGGCCACA-
---NAAACCACAG