Information for motif33


Reverse Opposite:

p-value:1e-14
log p-value:-3.261e+01
Information Content per bp:1.619
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif3.32%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.43%
Average Position of motif in Targets27.7 +/- 11.8bp
Average Position of motif in Background13.6 +/- 5.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.16
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0172.1_Sox1_2/Jaspar

Match Rank:1
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---TGATKCTT----
CTATAATTGTTAGCG

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:2
Score:0.62
Offset:0
Orientation:forward strand
Alignment:TGATKCTT
TAATCCCN

PB0148.1_Mtf1_2/Jaspar

Match Rank:3
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--TGATKCTT----
NNTTTTTCTTATNT

MA0132.1_Pdx1/Jaspar

Match Rank:4
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TGATKCTT
CTAATT---

MA0075.1_Prrx2/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TGATKCTT
TAATT---

Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:6
Score:0.58
Offset:-11
Orientation:forward strand
Alignment:-----------TGATKCTT-
ACTYKNATTCGTGNTACTTC

PB0093.1_Zfp105_1/Jaspar

Match Rank:7
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----TGATKCTT---
NTNTTGTTGTTTGTN

MA0164.1_Nr2e3/Jaspar

Match Rank:8
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:TGATKCTT-
--AAGCTTG

PB0062.1_Sox12_1/Jaspar

Match Rank:9
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TGATKCTT------
TAATTGTTCTAAAC

MA0476.1_FOS/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--TGATKCTT-
TGTGACTCATT