Information for motif34


Reverse Opposite:

p-value:1e-14
log p-value:-3.261e+01
Information Content per bp:1.810
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif3.32%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.42%
Average Position of motif in Targets21.3 +/- 11.4bp
Average Position of motif in Background8.5 +/- 1.9bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:GCTGTACC---
-CTGTTCCTGG

POL009.1_DCE_S_II/Jaspar

Match Rank:2
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GCTGTACC
GCTGTG--

POL010.1_DCE_S_III/Jaspar

Match Rank:3
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GCTGTACC
NGCTN----

PH0158.1_Rhox11_2/Jaspar

Match Rank:4
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----GCTGTACC----
AGGACGCTGTAAAGGGA

MA0499.1_Myod1/Jaspar

Match Rank:5
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GCTGTACC-
TGCAGCTGTCCCT

PH0157.1_Rhox11_1/Jaspar

Match Rank:6
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----GCTGTACC----
AAGACGCTGTAAAGCGA

PB0156.1_Plagl1_2/Jaspar

Match Rank:7
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GCTGTACC-------
NNNNGGTACCCCCCANN

MA0007.2_AR/Jaspar

Match Rank:8
Score:0.58
Offset:-6
Orientation:reverse strand
Alignment:------GCTGTACC-
GNACANNNTGTTCTT

MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer

Match Rank:9
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GCTGTACC
CAGCTGTT--

Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer

Match Rank:10
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----GCTGTACC
BAACAGCTGT---