Information for motif36


Reverse Opposite:

p-value:1e-13
log p-value:-3.017e+01
Information Content per bp:1.641
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif3.16%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.32%
Average Position of motif in Targets27.3 +/- 11.8bp
Average Position of motif in Background33.6 +/- 5.6bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0037.1_Hdx/Jaspar

Match Rank:1
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------AAAKCATWCTAA
AAGGCGAAATCATCGCA-

Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:2
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-AAAKCATWCTAA--
ATTTGCATACAATGG

MF0010.1_Homeobox_class/Jaspar

Match Rank:3
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:AAAKCATWCTAA
-AATTATT----

PB0028.1_Hbp1_1/Jaspar

Match Rank:4
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--AAAKCATWCTAA--
NNCATTCATTCATNNN

PB0079.1_Sry_1/Jaspar

Match Rank:5
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--AAAKCATWCTAA--
TATAATTATAATATTC

PB0064.1_Sox14_1/Jaspar

Match Rank:6
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--AAAKCATWCTAA--
GCTAATTATAATTATC

PH0145.1_Pou2f3/Jaspar

Match Rank:7
Score:0.55
Offset:1
Orientation:forward strand
Alignment:AAAKCATWCTAA-----
-TTGTATGCAAATTAGA

PB0069.1_Sox21_1/Jaspar

Match Rank:8
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--AAAKCATWCTAA--
TTTAATTATAATTAAG

PH0064.1_Hoxb9/Jaspar

Match Rank:9
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-AAAKCATWCTAA---
AGAGCCATAAAATTCG

PB0181.1_Spdef_2/Jaspar

Match Rank:10
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-AAAKCATWCTAA---
GATAACATCCTAGTAG