Information for motif40


Reverse Opposite:

p-value:1e-12
log p-value:-2.768e+01
Information Content per bp:1.764
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif2.33%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.28%
Average Position of motif in Targets24.3 +/- 13.1bp
Average Position of motif in Background33.0 +/- 4.0bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.21
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR/Cell-Cycle-Exp/Homer

Match Rank:1
Score:0.81
Offset:1
Orientation:reverse strand
Alignment:TTTTAAAAGY-
-TTTGAAACCG

TATA-Box(TBP)/Promoter/Homer

Match Rank:2
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--TTTTAAAAGY
GNCTATAAAAGG

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:3
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:TTTTAAAAGY-
-TTTAATTGCN

POL012.1_TATA-Box/Jaspar

Match Rank:4
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TTTTAAAAGY-----
GTATAAAAGGCGGGG

MA0108.2_TBP/Jaspar

Match Rank:5
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TTTTAAAAGY-----
GTATAAAAGGCGGGG

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:6
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TTTTAAAAGY
TTTTATTRGN

MA0151.1_ARID3A/Jaspar

Match Rank:7
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:TTTTAAAAGY
-TTTAAT---

PH0068.1_Hoxc13/Jaspar

Match Rank:8
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---TTTTAAAAGY---
NAATTTTACGAGNTNN

PB0148.1_Mtf1_2/Jaspar

Match Rank:9
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---TTTTAAAAGY-
NNTTTTTCTTATNT

PH0078.1_Hoxd13/Jaspar

Match Rank:10
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----TTTTAAAAGY--
CTACCAATAAAATTCT