Information for motif5


Reverse Opposite:

p-value:1e-28
log p-value:-6.534e+01
Information Content per bp:1.547
Number of Target Sequences with motif32.0
Percentage of Target Sequences with motif5.32%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.42%
Average Position of motif in Targets24.4 +/- 13.1bp
Average Position of motif in Background34.7 +/- 6.8bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:1
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--CAGGTGYTGDAG
NNCAGGTGNN----

PB0003.1_Ascl2_1/Jaspar

Match Rank:2
Score:0.72
Offset:-6
Orientation:reverse strand
Alignment:------CAGGTGYTGDAG
NNNNAGCAGCTGCTGAN-

Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-CAGGTGYTGDAG
NCAGCTGCTG---

MA0103.2_ZEB1/Jaspar

Match Rank:4
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:CAGGTGYTGDAG
CAGGTGAGG---

PB0117.1_Eomes_2/Jaspar

Match Rank:5
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---CAGGTGYTGDAG-
GCGGAGGTGTCGCCTC

Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer

Match Rank:6
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CAGGTGYTGDAG
ACAGCTGTTN---

MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer

Match Rank:7
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:CAGGTGYTGDAG
CAGCTGTT----

Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer

Match Rank:8
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-CAGGTGYTGDAG
ACAGCTGTTV---

MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:9
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CAGGTGYTGDAG
AGCAGCTGCTNN--

E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer

Match Rank:10
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-CAGGTGYTGDAG
GCAGCTGTNN---