Information for motif1


Reverse Opposite:

p-value:1e-18
log p-value:-4.255e+01
Information Content per bp:1.761
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif16.13%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif1.01%
Average Position of motif in Targets29.8 +/- 12.6bp
Average Position of motif in Background21.9 +/- 8.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0025.1_Glis2_1/Jaspar

Match Rank:1
Score:0.74
Offset:-4
Orientation:forward strand
Alignment:----GACCCCWCWG--
TATCGACCCCCCACAG

PB0118.1_Esrra_2/Jaspar

Match Rank:2
Score:0.73
Offset:-6
Orientation:reverse strand
Alignment:------GACCCCWCWG-
NNNNTTGACCCCTNNNN

PB0057.1_Rxra_1/Jaspar

Match Rank:3
Score:0.73
Offset:-6
Orientation:forward strand
Alignment:------GACCCCWCWG-
TGTCGTGACCCCTTAAT

PB0030.1_Hnf4a_1/Jaspar

Match Rank:4
Score:0.72
Offset:-6
Orientation:reverse strand
Alignment:------GACCCCWCWG-
NNANTTGACCCCTNNNN

PB0157.1_Rara_2/Jaspar

Match Rank:5
Score:0.70
Offset:-5
Orientation:reverse strand
Alignment:-----GACCCCWCWG-
NNCNTGACCCCGCTCT

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:6
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GACCCCWCWG
TGACCT-----

GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:7
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GACCCCWCWG-
GGACCACCCACG

PB0049.1_Nr2f2_1/Jaspar

Match Rank:8
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----GACCCCWCWG-
NNNNTGACCTTTNNNN

PB0153.1_Nr2f2_2/Jaspar

Match Rank:9
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----GACCCCWCWG-
NNNNTGACCCGGCGCG

VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer

Match Rank:10
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----GACCCCWCWG------
NNNTGAACTCNNTGACCTCN