Information for motif13


Reverse Opposite:

p-value:1e-9
log p-value:-2.172e+01
Information Content per bp:1.640
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif8.06%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.29%
Average Position of motif in Targets24.1 +/- 11.4bp
Average Position of motif in Background32.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0134.1_Hnf4a_2/Jaspar

Match Rank:1
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----GATGTCCA----
GGCAAAAGTCCAATAA

PB0133.1_Hic1_2/Jaspar

Match Rank:2
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GATGTCCA-----
GGGTGTGCCCAAAAGG

MA0130.1_ZNF354C/Jaspar

Match Rank:3
Score:0.62
Offset:3
Orientation:forward strand
Alignment:GATGTCCA-
---ATCCAC

MA0161.1_NFIC/Jaspar

Match Rank:4
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:GATGTCCA-
---TGCCAA

PB0026.1_Gm397_1/Jaspar

Match Rank:5
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GATGTCCA-------
CAGATGTGCACATACGT

PB0104.1_Zscan4_1/Jaspar

Match Rank:6
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GATGTCCA-------
TACATGTGCACATAAAA

MA0152.1_NFATC2/Jaspar

Match Rank:7
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GATGTCCA
-TTTTCCA

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---GATGTCCA
GTTAATGGCC-

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:9
Score:0.56
Offset:-7
Orientation:forward strand
Alignment:-------GATGTCCA--
AAGGCCAGATGGTCCGG

POL004.1_CCAAT-box/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GATGTCCA----
ACTAGCCAATCA