Information for motif17


Reverse Opposite:

p-value:1e-8
log p-value:-1.877e+01
Information Content per bp:1.719
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif7.26%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.75%
Average Position of motif in Targets22.7 +/- 12.1bp
Average Position of motif in Background24.7 +/- 9.9bp
Strand Bias (log2 ratio + to - strand density)-1.2
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0011.1_Alx1_2/Jaspar

Match Rank:1
Score:0.77
Offset:-3
Orientation:forward strand
Alignment:---GTTATTTA------
CGCATTAATTAATTGGC

PH0128.1_Otp/Jaspar

Match Rank:2
Score:0.77
Offset:-3
Orientation:reverse strand
Alignment:---GTTATTTA------
CNNATTAATTAATTNNN

PH0153.1_Prop1/Jaspar

Match Rank:3
Score:0.76
Offset:-3
Orientation:forward strand
Alignment:---GTTATTTA------
CGAATTAATTAAGAAAC

PH0173.1_Uncx/Jaspar

Match Rank:4
Score:0.76
Offset:-3
Orientation:reverse strand
Alignment:---GTTATTTA------
CNCNTTAATTAATTANN

PH0069.1_Hoxc4/Jaspar

Match Rank:5
Score:0.75
Offset:-4
Orientation:reverse strand
Alignment:----GTTATTTA-----
NNTNNTTAATTAATNCG

PH0051.1_Hoxa4/Jaspar

Match Rank:6
Score:0.75
Offset:-3
Orientation:reverse strand
Alignment:---GTTATTTA------
CNAGTTAATTAATAANN

PH0059.1_Hoxb4/Jaspar

Match Rank:7
Score:0.75
Offset:-3
Orientation:forward strand
Alignment:---GTTATTTA------
CGCGTTAATTAATTACC

PB0031.1_Hoxa3_1/Jaspar

Match Rank:8
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:GTTATTTA------
GTTAATTANCTCNN

PH0136.1_Phox2b/Jaspar

Match Rank:9
Score:0.75
Offset:-3
Orientation:reverse strand
Alignment:---GTTATTTA------
CNNNTTAATTAATTNNN

PH0176.1_Vsx1/Jaspar

Match Rank:10
Score:0.75
Offset:-3
Orientation:forward strand
Alignment:---GTTATTTA------
CGAGTTAATTAATAATT