Information for motif2


Reverse Opposite:

p-value:1e-17
log p-value:-4.139e+01
Information Content per bp:1.600
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif12.90%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.90%
Average Position of motif in Targets27.7 +/- 13.7bp
Average Position of motif in Background31.7 +/- 6.5bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0442.1_SOX10/Jaspar

Match Rank:1
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:STKGACACTG
----ACAAAG

MA0078.1_Sox17/Jaspar

Match Rank:2
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:STKGACACTG--
---GACAATGNN

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:STKGACACTG
CTTGGCAA--

MA0515.1_Sox6/Jaspar

Match Rank:4
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:STKGACACTG-
-AAAACAATGG

PB0132.1_Hbp1_2/Jaspar

Match Rank:5
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-STKGACACTG------
NNTNNACAATGGGANNN

PB0195.1_Zbtb3_2/Jaspar

Match Rank:6
Score:0.58
Offset:1
Orientation:forward strand
Alignment:STKGACACTG-------
-CAATCACTGGCAGAAT

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:STKGACACTG
BCAGACWA--

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:STKGACACTG
CCAGACAG--

PB0091.1_Zbtb3_1/Jaspar

Match Rank:9
Score:0.58
Offset:0
Orientation:forward strand
Alignment:STKGACACTG-------
AATCGCACTGCATTCCG

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:10
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---STKGACACTG
GGTGYTGACAGS-