Information for motif20


Reverse Opposite:

p-value:1e-6
log p-value:-1.526e+01
Information Content per bp:1.696
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif8.06%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif1.34%
Average Position of motif in Targets25.7 +/- 12.0bp
Average Position of motif in Background31.0 +/- 7.7bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0124.1_NKX3-1/Jaspar

Match Rank:1
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-AAATATTHAA
TAAGTAT----

PB0002.1_Arid5a_1/Jaspar

Match Rank:2
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----AAATATTHAA
NNTNNCAATATTAG-

MA0153.1_HNF1B/Jaspar

Match Rank:3
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---AAATATTHAA
GTTAAATATTAA-

MF0010.1_Homeobox_class/Jaspar

Match Rank:4
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:AAATATTHAA
AATTATT---

Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer

Match Rank:5
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----AAATATTHAA
GGTTAAACATTAA-

PB0197.1_Zfp105_2/Jaspar

Match Rank:6
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---AAATATTHAA----
NAAANTTATTGAANCAN

MA0046.1_HNF1A/Jaspar

Match Rank:7
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---AAATATTHAA-
GNTAATNATTAACC

MA0151.1_ARID3A/Jaspar

Match Rank:8
Score:0.61
Offset:4
Orientation:forward strand
Alignment:AAATATTHAA
----ATTAAA

MA0042.1_FOXI1/Jaspar

Match Rank:9
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----AAATATTHAA
AAACAAACANNC--

PB0148.1_Mtf1_2/Jaspar

Match Rank:10
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AAATATTHAA----
AAATAAGAAAAAAC