Information for motif24


Reverse Opposite:

p-value:1e-4
log p-value:-1.063e+01
Information Content per bp:1.530
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif4.84%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.33%
Average Position of motif in Targets29.6 +/- 6.2bp
Average Position of motif in Background36.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0067.1_Pax2/Jaspar

Match Rank:1
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:CCGTGACC
NCGTGACN

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:2
Score:0.75
Offset:3
Orientation:reverse strand
Alignment:CCGTGACC-
---TGACCT

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:3
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---CCGTGACC-
TGACCTTGACCT

MA0160.1_NR4A2/Jaspar

Match Rank:4
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:CCGTGACC--
--GTGACCTT

PB0057.1_Rxra_1/Jaspar

Match Rank:5
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--CCGTGACC-------
TGTCGTGACCCCTTAAT

PB0153.1_Nr2f2_2/Jaspar

Match Rank:6
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-CCGTGACC-------
NNNNTGACCCGGCGCG

PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.70
Offset:-7
Orientation:reverse strand
Alignment:-------CCGTGACC
TCAGNGAGCGTGAC-

PB0157.1_Rara_2/Jaspar

Match Rank:8
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-CCGTGACC-------
NNCNTGACCCCGCTCT

MA0071.1_RORA_1/Jaspar

Match Rank:9
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:CCGTGACC-----
---TGACCTTGAT

PB0053.1_Rara_1/Jaspar

Match Rank:10
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-CCGTGACC-------
NNNGTGACCTTTGNNN