Information for motif25


Reverse Opposite:

p-value:1e-3
log p-value:-8.205e+00
Information Content per bp:1.688
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif4.03%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.50%
Average Position of motif in Targets24.5 +/- 16.3bp
Average Position of motif in Background18.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.60
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Sp1(Zf)/Promoter/Homer

Match Rank:1
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CGCGCCGC----
GGCCCCGCCCCC

PB0164.1_Smad3_2/Jaspar

Match Rank:2
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CGCGCCGC-------
TACGCCCCGCCACTCTG

POL006.1_BREu/Jaspar

Match Rank:3
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CGCGCCGC-
-AGCGCGCC

MA0516.1_SP2/Jaspar

Match Rank:4
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CGCGCCGC--------
-GCCCCGCCCCCTCCC

PB0112.1_E2F2_2/Jaspar

Match Rank:5
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CGCGCCGC-------
CCTTCGGCGCCAAAAGG

PB0113.1_E2F3_2/Jaspar

Match Rank:6
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CGCGCCGC-------
AGCTCGGCGCCAAAAGC

PB0179.1_Sp100_2/Jaspar

Match Rank:7
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CGCGCCGC-------
TCCGTCGCTTAAAAG

POL003.1_GC-box/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CGCGCCGC-----
NAGCCCCGCCCCCN

PB0199.1_Zfp161_2/Jaspar

Match Rank:9
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CGCGCCGC---
NNGCNCTGCGCGGC

MA0079.3_SP1/Jaspar

Match Rank:10
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CGCGCCGC----
-GCCCCGCCCCC