Information for motif3


Reverse Opposite:

p-value:1e-17
log p-value:-4.139e+01
Information Content per bp:1.619
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif12.90%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.74%
Average Position of motif in Targets23.8 +/- 10.0bp
Average Position of motif in Background35.5 +/- 2.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer

Match Rank:1
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:TCCTATTC----
--CTATTTTTGG

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:2
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---TCCTATTC
ACTTCCTGTT-

PB0106.1_Arid5a_2/Jaspar

Match Rank:3
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----TCCTATTC----
TNNTTTCGTATTNNANN

PB0181.1_Spdef_2/Jaspar

Match Rank:4
Score:0.66
Offset:-7
Orientation:forward strand
Alignment:-------TCCTATTC-
GATAACATCCTAGTAG

MA0497.1_MEF2C/Jaspar

Match Rank:5
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TCCTATTC-------
TTCTATTTTTAGNNN

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:TCCTATTC-----
-KCTATTTTTRGH

MA0098.2_Ets1/Jaspar

Match Rank:7
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------TCCTATTC-
CCCACTTCCTGTCTC

PB0132.1_Hbp1_2/Jaspar

Match Rank:8
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---TCCTATTC------
TGTTCCCATTGTGTACT

PB0170.1_Sox17_2/Jaspar

Match Rank:9
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TCCTATTC-------
GACCACATTCATACAAT

PB0128.1_Gcm1_2/Jaspar

Match Rank:10
Score:0.60
Offset:-6
Orientation:reverse strand
Alignment:------TCCTATTC---
NTCNTCCCCTATNNGNN