Information for motif9


Reverse Opposite:

p-value:1e-12
log p-value:-2.798e+01
Information Content per bp:1.521
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif12.10%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.91%
Average Position of motif in Targets24.7 +/- 12.1bp
Average Position of motif in Background32.6 +/- 8.0bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----TTGCCTKHTA
NNACTTGCCTT---

EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer

Match Rank:2
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TTGCCTKHTA
ATTTCCTGTN-

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:3
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TTGCCTKHTA
ATTTCCTGTN-

EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer

Match Rank:4
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TTGCCTKHTA
ACTTCCTGBT-

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TTGCCTKHTA
ACTTCCTGTT-

MA0083.2_SRF/Jaspar

Match Rank:6
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TTGCCTKHTA--------
TTNCCTTATTTGGNCATN

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer

Match Rank:7
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TTGCCTKHTA
TTGCGTGCVA

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:8
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--TTGCCTKHTA
CACTTCCTGT--

ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer

Match Rank:9
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TTGCCTKHTA
ACTTCCTBGT-

MA0474.1_Erg/Jaspar

Match Rank:10
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---TTGCCTKHTA
CCACTTCCTGT--