| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
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| 1 |  | Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer | 1e-4 | -1.063e+01 | 0.0060 | 6.0 | 4.84% | 1.2 | 0.54% | motif file (matrix) |
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| 2 |  | E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer | 1e-2 | -6.434e+00 | 0.1976 | 7.0 | 5.65% | 3.4 | 1.55% | motif file (matrix) |
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| 3 |  | AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer | 1e-2 | -5.970e+00 | 0.1976 | 4.0 | 3.23% | 1.6 | 0.74% | motif file (matrix) |
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| 4 |  | RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer | 1e-2 | -5.970e+00 | 0.1976 | 4.0 | 3.23% | 1.6 | 0.74% | motif file (matrix) |
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| 5 |  | Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.072e+00 | 0.3085 | 10.0 | 8.06% | 7.6 | 3.45% | motif file (matrix) |
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| 6 |  | Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer | 1e-2 | -4.937e+00 | 0.3085 | 6.0 | 4.84% | 3.0 | 1.36% | motif file (matrix) |
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