Information for motif1


Reverse Opposite:

p-value:1e-1436
log p-value:-3.307e+03
Information Content per bp:1.587
Number of Target Sequences with motif1402.0
Percentage of Target Sequences with motif36.08%
Number of Background Sequences with motif46.6
Percentage of Background Sequences with motif1.61%
Average Position of motif in Targets24.8 +/- 10.7bp
Average Position of motif in Background29.1 +/- 20.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.16
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0086.1_Irx5/Jaspar

Match Rank:1
Score:0.81
Offset:-6
Orientation:reverse strand
Alignment:------ACATGTYYNDAC
ANTNNTACATGTANNTN-

PH0082.1_Irx2/Jaspar

Match Rank:2
Score:0.80
Offset:-6
Orientation:reverse strand
Alignment:------ACATGTYYNDAC
ANTNTTACATGTATNTA-

p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer

Match Rank:3
Score:0.80
Offset:-3
Orientation:reverse strand
Alignment:---ACATGTYYNDAC-----
NGGGCATGTCTGGGCATGTT

p53(p53)/Saos-p53-ChIP-Seq/Homer

Match Rank:4
Score:0.80
Offset:-3
Orientation:reverse strand
Alignment:---ACATGTYYNDAC-----
NGGGCATGTCTGGGCATGTT

PH0085.1_Irx4/Jaspar

Match Rank:5
Score:0.79
Offset:-6
Orientation:reverse strand
Alignment:------ACATGTYYNDAC
NNTTTTACATGTANNNT-

PH0083.1_Irx3_1/Jaspar

Match Rank:6
Score:0.78
Offset:-6
Orientation:reverse strand
Alignment:------ACATGTYYNDAC
ANTATTACATGTANNNN-

PH0084.1_Irx3_2/Jaspar

Match Rank:7
Score:0.78
Offset:-6
Orientation:reverse strand
Alignment:------ACATGTYYNDAC
NNTATTACATGTANNNT-

p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer

Match Rank:8
Score:0.78
Offset:-3
Orientation:forward strand
Alignment:---ACATGTYYNDAC-----
NNNGCATGTCNNGACATGCN

MA0106.2_TP53/Jaspar

Match Rank:9
Score:0.76
Offset:0
Orientation:forward strand
Alignment:ACATGTYYNDAC---
ACATGCCCAGACATG

PH0087.1_Irx6/Jaspar

Match Rank:10
Score:0.76
Offset:-6
Orientation:reverse strand
Alignment:------ACATGTYYNDAC
ANTTNTACATGTANTTN-