Information for motif20


Reverse Opposite:

p-value:1e-33
log p-value:-7.668e+01
Information Content per bp:1.673
Number of Target Sequences with motif33.0
Percentage of Target Sequences with motif0.85%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets25.9 +/- 13.5bp
Average Position of motif in Background26.3 +/- 10.6bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GTGGCTGAAC
TWGTCTGV--

MA0117.1_Mafb/Jaspar

Match Rank:2
Score:0.62
Offset:3
Orientation:forward strand
Alignment:GTGGCTGAAC-
---GCTGACGC

MA0130.1_ZNF354C/Jaspar

Match Rank:3
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GTGGCTGAAC
GTGGAT----

Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---GTGGCTGAAC
TGCGTGGGYG---

POL010.1_DCE_S_III/Jaspar

Match Rank:5
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GTGGCTGAAC
--NGCTN---

POL002.1_INR/Jaspar

Match Rank:6
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GTGGCTGAAC
NNNANTGA--

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:7
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---GTGGCTGAAC
NNTGTGGTTT---

MA0002.2_RUNX1/Jaspar

Match Rank:8
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----GTGGCTGAAC
GTCTGTGGTTT---

Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer

Match Rank:9
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---GTGGCTGAAC
NGCGTGGGCGGR-

PH0171.1_Nkx2-1/Jaspar

Match Rank:10
Score:0.55
Offset:-8
Orientation:reverse strand
Alignment:--------GTGGCTGAAC
AANTTCAAGTGGCTTN--