Information for motif1


Reverse Opposite:

p-value:1e-3340
log p-value:-7.691e+03
Information Content per bp:1.514
Number of Target Sequences with motif1273.0
Percentage of Target Sequences with motif32.76%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets24.7 +/- 8.7bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer

Match Rank:1
Score:0.98
Offset:0
Orientation:reverse strand
Alignment:NNDACATGTYNVGACATGTH
NGGGCATGTCTGGGCATGTT

p53(p53)/Saos-p53-ChIP-Seq/Homer

Match Rank:2
Score:0.98
Offset:0
Orientation:reverse strand
Alignment:NNDACATGTYNVGACATGTH
NGGGCATGTCTGGGCATGTT

p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer

Match Rank:3
Score:0.97
Offset:0
Orientation:forward strand
Alignment:NNDACATGTYNVGACATGTH
NNNGCATGTCNNGACATGCN

MA0525.1_TP63/Jaspar

Match Rank:4
Score:0.93
Offset:1
Orientation:reverse strand
Alignment:NNDACATGTYNVGACATGTH-
-NGGCATGTCTGGGCATGTNN

MA0106.2_TP53/Jaspar

Match Rank:5
Score:0.91
Offset:4
Orientation:reverse strand
Alignment:NNDACATGTYNVGACATGTH
----CATGTCTGGGCATGT-

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.73
Offset:3
Orientation:forward strand
Alignment:NNDACATGTYNVGACATGTH
---ACATGCCCGGGCAT---

Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.68
Offset:0
Orientation:forward strand
Alignment:NNDACATGTYNVGACATGTH
NAAACCGGTTNNAACCGGTT

MA0145.2_Tcfcp2l1/Jaspar

Match Rank:8
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:NNDACATGTYNVGACATGTH
----CTGGNTNNAACTGG--

PH0086.1_Irx5/Jaspar

Match Rank:9
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---NNDACATGTYNVGACATGTH
ANTNNTACATGTANNTN------

PH0082.1_Irx2/Jaspar

Match Rank:10
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---NNDACATGTYNVGACATGTH
ANTNTTACATGTATNTA------