Information for motif11


Reverse Opposite:

p-value:1e-66
log p-value:-1.532e+02
Information Content per bp:1.976
Number of Target Sequences with motif207.0
Percentage of Target Sequences with motif5.33%
Number of Background Sequences with motif35.9
Percentage of Background Sequences with motif1.24%
Average Position of motif in Targets24.6 +/- 12.3bp
Average Position of motif in Background39.3 +/- 6.3bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0011.1_HMG_class/Jaspar

Match Rank:1
Score:0.69
Offset:2
Orientation:forward strand
Alignment:TGCTTGTT
--ATTGTT

MA0084.1_SRY/Jaspar

Match Rank:2
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:TGCTTGTT---
--ATTGTTTAN

PB0172.1_Sox1_2/Jaspar

Match Rank:3
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---TGCTTGTT----
CTATAATTGTTAGCG

MA0087.1_Sox5/Jaspar

Match Rank:4
Score:0.66
Offset:2
Orientation:forward strand
Alignment:TGCTTGTT-
--ATTGTTA

MA0042.1_FOXI1/Jaspar

Match Rank:5
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---TGCTTGTT-
GGATGTTTGTTT

MA0070.1_PBX1/Jaspar

Match Rank:6
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--TGCTTGTT--
TTTGATTGATGN

PB0062.1_Sox12_1/Jaspar

Match Rank:7
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TGCTTGTT------
TAATTGTTCTAAAC

MA0041.1_Foxd3/Jaspar

Match Rank:8
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---TGCTTGTT-
GAATGTTTGTTT

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:9
Score:0.62
Offset:0
Orientation:forward strand
Alignment:TGCTTGTT
TGCGTG--

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:10
Score:0.62
Offset:0
Orientation:forward strand
Alignment:TGCTTGTT--
CCATTGTTNY