Information for motif21


Reverse Opposite:

p-value:1e-42
log p-value:-9.895e+01
Information Content per bp:1.483
Number of Target Sequences with motif49.0
Percentage of Target Sequences with motif1.26%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets26.3 +/- 12.7bp
Average Position of motif in Background16.8 +/- 4.9bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-TCCGGGACGC
TTCCNGGAAG-

Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer

Match Rank:2
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----TCCGGGACGC
NNCTTCCNGGAAGN

MA0597.1_THAP1/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TCCGGGACGC
TNNGGGCAG-

MA0137.3_STAT1/Jaspar

Match Rank:4
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--TCCGGGACGC
TTTCCAGGAAA-

STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer

Match Rank:5
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--TCCGGGACGC
TTTCCNGGAAAN

MA0144.2_STAT3/Jaspar

Match Rank:6
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TCCGGGACGC
CTTCTGGGAAA-

Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----TCCGGGACGC
NRYTTCCGGY----

MA0028.1_ELK1/Jaspar

Match Rank:8
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--TCCGGGACGC
CTTCCGGNNN--

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:9
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---TCCGGGACGC
ACATCCTGNT---

Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer

Match Rank:10
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------TCCGGGACGC
NNNCTTTCCAGGAAA-