Information for motif25


Reverse Opposite:

p-value:1e-34
log p-value:-7.899e+01
Information Content per bp:1.639
Number of Target Sequences with motif54.0
Percentage of Target Sequences with motif1.39%
Number of Background Sequences with motif4.9
Percentage of Background Sequences with motif0.17%
Average Position of motif in Targets26.3 +/- 12.7bp
Average Position of motif in Background29.2 +/- 8.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:YCACYCTCCT-
NNACTTACCTN

MA0103.2_ZEB1/Jaspar

Match Rank:2
Score:0.62
Offset:2
Orientation:forward strand
Alignment:YCACYCTCCT-
--CCTCACCTG

Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:YCACYCTCCT
-CCCCCCCC-

MA0122.1_Nkx3-2/Jaspar

Match Rank:4
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-YCACYCTCCT
NCCACTTAN--

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:YCACYCTCCT-
NNACTTGCCTT

PB0114.1_Egr1_2/Jaspar

Match Rank:6
Score:0.57
Offset:-6
Orientation:reverse strand
Alignment:------YCACYCTCCT
NNAGTCCCACTCNNNN

POL002.1_INR/Jaspar

Match Rank:7
Score:0.56
Offset:0
Orientation:forward strand
Alignment:YCACYCTCCT
TCAGTCTT--

MA0130.1_ZNF354C/Jaspar

Match Rank:8
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--YCACYCTCCT
ATCCAC------

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:9
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--YCACYCTCCT
AGCCACTCAAG-

Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:YCACYCTCCT---
-CCCCCTGCTGTG