Information for motif27


Reverse Opposite:

p-value:1e-27
log p-value:-6.359e+01
Information Content per bp:1.530
Number of Target Sequences with motif56.0
Percentage of Target Sequences with motif1.44%
Number of Background Sequences with motif6.8
Percentage of Background Sequences with motif0.24%
Average Position of motif in Targets23.3 +/- 12.7bp
Average Position of motif in Background10.5 +/- 3.8bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:1
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:CACGCGCG
CACGCA--

PB0095.1_Zfp161_1/Jaspar

Match Rank:2
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---CACGCGCG-----
TGGCGCGCGCGCCTGA

MA0259.1_HIF1A::ARNT/Jaspar

Match Rank:3
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-CACGCGCG
GCACGTNC-

bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---CACGCGCG
NGKCACGTGM-

MA0004.1_Arnt/Jaspar

Match Rank:5
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CACGCGCG
CACGTG--

c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer

Match Rank:6
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CACGCGCG
NCCACGTG--

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer

Match Rank:7
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CACGCGCG
TBGCACGCAA-

BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer

Match Rank:8
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CACGCGCG
GNCACGTG--

PB0008.1_E2F2_1/Jaspar

Match Rank:9
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CACGCGCG----
ATAAAGGCGCGCGAT

CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer

Match Rank:10
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CACGCGCG
GHCACGTG--