Information for motif3


Reverse Opposite:

p-value:1e-194
log p-value:-4.485e+02
Information Content per bp:1.478
Number of Target Sequences with motif215.0
Percentage of Target Sequences with motif5.53%
Number of Background Sequences with motif8.1
Percentage of Background Sequences with motif0.28%
Average Position of motif in Targets24.0 +/- 11.5bp
Average Position of motif in Background29.9 +/- 2.1bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-CADGYHCAGA
CCAGGAACAG-

POL002.1_INR/Jaspar

Match Rank:2
Score:0.72
Offset:5
Orientation:forward strand
Alignment:CADGYHCAGA---
-----TCAGTCTT

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-CADGYHCAGA
CAAAGGTCAG-

MA0592.1_ESRRA/Jaspar

Match Rank:4
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CADGYHCAGA
CCAAGGTCACA

MA0160.1_NR4A2/Jaspar

Match Rank:5
Score:0.67
Offset:1
Orientation:forward strand
Alignment:CADGYHCAGA
-AAGGTCAC-

POL009.1_DCE_S_II/Jaspar

Match Rank:6
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:CADGYHCAGA
----CACAGN

MA0141.2_Esrrb/Jaspar

Match Rank:7
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----CADGYHCAGA
AGCTCAAGGTCA--

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:8
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CADGYHCAGA
BTCAAGGTCA--

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CADGYHCAGA
TCAAGGTCAN-

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:10
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CADGYHCAGA
NTCAAGGTCA--