Information for motif33


Reverse Opposite:

p-value:1e-18
log p-value:-4.284e+01
Information Content per bp:1.681
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets26.1 +/- 14.7bp
Average Position of motif in Background29.6 +/- 5.7bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GGCTCTGAGT
-GCTCCG---

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:2
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GGCTCTGAGT-
-GCAGTGATTT

MA0483.1_Gfi1b/Jaspar

Match Rank:3
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GGCTCTGAGT-
TGCTGTGATTT

POL010.1_DCE_S_III/Jaspar

Match Rank:4
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GGCTCTGAGT
NGCTN-----

POL009.1_DCE_S_II/Jaspar

Match Rank:5
Score:0.55
Offset:3
Orientation:forward strand
Alignment:GGCTCTGAGT
---GCTGTG-

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:6
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GGCTCTGAGT
AGGTCTCTAACC

POL002.1_INR/Jaspar

Match Rank:7
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GGCTCTGAGT
NNNANTGA--

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:8
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:GGCTCTGAGT----
---CTTGAGTGGCT

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:9
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-GGCTCTGAGT
TGACCTTGAN-

MA0099.2_JUN::FOS/Jaspar

Match Rank:10
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:GGCTCTGAGT--
-----TGAGTCA