Information for motif9


Reverse Opposite:

p-value:1e-74
log p-value:-1.726e+02
Information Content per bp:1.509
Number of Target Sequences with motif60.0
Percentage of Target Sequences with motif1.54%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets25.9 +/- 12.1bp
Average Position of motif in Background29.2 +/- 2.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.55
Offset:5
Orientation:forward strand
Alignment:AGCATGCTCCAG
-----GCTCCG-

NRF1/Promoter/Homer

Match Rank:2
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---AGCATGCTCCAG
GTGCGCATGCGC---

NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---AGCATGCTCCAG
CTGCGCATGCGC---

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.53
Offset:1
Orientation:forward strand
Alignment:AGCATGCTCCAG
-CNGTCCTCCC-

MA0506.1_NRF1/Jaspar

Match Rank:5
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-AGCATGCTCCAG
GCGCCTGCGCA--

PB0207.1_Zic3_2/Jaspar

Match Rank:6
Score:0.52
Offset:-6
Orientation:forward strand
Alignment:------AGCATGCTCCAG
GAGCACAGCAGGACA---

HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.50
Offset:-6
Orientation:forward strand
Alignment:------AGCATGCTCCAG--
NNTTCTGGAANNTTCTAGAA

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:8
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:AGCATGCTCCAG-
---CTGTTCCTGG

MA0150.2_Nfe2l2/Jaspar

Match Rank:9
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-AGCATGCTCCAG--
CAGCATGACTCAGCA

MA0524.1_TFAP2C/Jaspar

Match Rank:10
Score:0.50
Offset:1
Orientation:forward strand
Alignment:AGCATGCTCCAG----
-CATGGCCCCAGGGCA