Information for motif13


Reverse Opposite:

p-value:1e-48
log p-value:-1.127e+02
Information Content per bp:1.842
Number of Target Sequences with motif63.0
Percentage of Target Sequences with motif1.34%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets22.9 +/- 12.0bp
Average Position of motif in Background16.7 +/- 9.4bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL010.1_DCE_S_III/Jaspar

Match Rank:1
Score:0.71
Offset:0
Orientation:forward strand
Alignment:RAGCCCGG
CAGCC---

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:2
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-RAGCCCGG
TAATCCCN-

PB0099.1_Zfp691_1/Jaspar

Match Rank:3
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----RAGCCCGG----
NNNNTGAGCACTGTNNG

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--RAGCCCGG----
ACATGCCCGGGCAT

MA0597.1_THAP1/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:forward strand
Alignment:RAGCCCGG-
CTGCCCGCA

POL013.1_MED-1/Jaspar

Match Rank:6
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--RAGCCCGG
CGGAGC----

PB0030.1_Hnf4a_1/Jaspar

Match Rank:7
Score:0.58
Offset:-6
Orientation:reverse strand
Alignment:------RAGCCCGG---
NNANTTGACCCCTNNNN

MA0146.2_Zfx/Jaspar

Match Rank:8
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:RAGCCCGG------
CAGGCCNNGGCCNN

ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:9
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-RAGCCCGG
CTAGGCCT-

PB0024.1_Gcm1_1/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--RAGCCCGG------
TCGTACCCGCATCATT