Information for motif30


Reverse Opposite:

p-value:1e-13
log p-value:-3.137e+01
Information Content per bp:1.955
Number of Target Sequences with motif33.0
Percentage of Target Sequences with motif0.11%
Number of Background Sequences with motif5.1
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets25.1 +/- 11.2bp
Average Position of motif in Background22.3 +/- 6.6bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0018.1_Dbx1/Jaspar

Match Rank:1
Score:0.72
Offset:-5
Orientation:forward strand
Alignment:-----AATTAAGAAT--
TAATTAATTAATAATTA

PH0051.1_Hoxa4/Jaspar

Match Rank:2
Score:0.72
Offset:-6
Orientation:reverse strand
Alignment:------AATTAAGAAT-
CNAGTTAATTAATAANN

PH0172.1_Tlx2/Jaspar

Match Rank:3
Score:0.71
Offset:-5
Orientation:forward strand
Alignment:-----AATTAAGAAT--
TAATTAATTAATAACTA

PH0091.1_Lhx1/Jaspar

Match Rank:4
Score:0.71
Offset:-6
Orientation:forward strand
Alignment:------AATTAAGAAT-
CGAATTAATTAATAATG

PH0069.1_Hoxc4/Jaspar

Match Rank:5
Score:0.71
Offset:-6
Orientation:forward strand
Alignment:------AATTAAGAAT-
CGAATTAATTAACAATA

PH0063.1_Hoxb8/Jaspar

Match Rank:6
Score:0.70
Offset:-6
Orientation:forward strand
Alignment:------AATTAAGAAT
ACCGGCAATTAATAAA

PH0153.1_Prop1/Jaspar

Match Rank:7
Score:0.70
Offset:-6
Orientation:forward strand
Alignment:------AATTAAGAAT-
CGAATTAATTAAGAAAC

PH0133.1_Pax7/Jaspar

Match Rank:8
Score:0.70
Offset:-6
Orientation:forward strand
Alignment:------AATTAAGAAT-
CGAACTAATTAGTACTA

MA0075.1_Prrx2/Jaspar

Match Rank:9
Score:0.70
Offset:0
Orientation:forward strand
Alignment:AATTAAGAAT
AATTA-----

PH0059.1_Hoxb4/Jaspar

Match Rank:10
Score:0.69
Offset:-6
Orientation:forward strand
Alignment:------AATTAAGAAT-
CGCGTTAATTAATTACC