Information for motif12


Reverse Opposite:

p-value:1e-40
log p-value:-9.322e+01
Information Content per bp:1.731
Number of Target Sequences with motif38.0
Percentage of Target Sequences with motif6.73%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.42%
Average Position of motif in Targets54.6 +/- 25.8bp
Average Position of motif in Background37.7 +/- 18.6bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CGGTGCSTCG
CGGAGC----

Sp1(Zf)/Promoter/Homer

Match Rank:2
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----CGGTGCSTCG
GGGGGCGGGGCC---

PB0052.1_Plagl1_1/Jaspar

Match Rank:3
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CGGTGCSTCG----
NNNGGGGCGCCCCCNN

MA0146.2_Zfx/Jaspar

Match Rank:4
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----CGGTGCSTCG
GGGGCCGAGGCCTG-

PB0151.1_Myf6_2/Jaspar

Match Rank:5
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CGGTGCSTCG------
-GGNGCGNCTGTTNNN

PB0076.1_Sp4_1/Jaspar

Match Rank:6
Score:0.54
Offset:-5
Orientation:reverse strand
Alignment:-----CGGTGCSTCG--
NNNAAGGGGGCGGGNNN

PB0208.1_Zscan4_2/Jaspar

Match Rank:7
Score:0.52
Offset:-6
Orientation:reverse strand
Alignment:------CGGTGCSTCG
NNNNTTGTGTGCTTNN

PB0179.1_Sp100_2/Jaspar

Match Rank:8
Score:0.52
Offset:3
Orientation:forward strand
Alignment:CGGTGCSTCG--------
---TCCGTCGCTTAAAAG

PB0143.1_Klf7_2/Jaspar

Match Rank:9
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---CGGTGCSTCG----
NNNTNGGGCGTATNNTN

PB0202.1_Zfp410_2/Jaspar

Match Rank:10
Score:0.52
Offset:-4
Orientation:reverse strand
Alignment:----CGGTGCSTCG---
NNTNNGGGGCGGNGNGN