Information for motif39


Reverse Opposite:

p-value:1e-9
log p-value:-2.287e+01
Information Content per bp:1.530
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif3.36%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.70%
Average Position of motif in Targets47.8 +/- 23.9bp
Average Position of motif in Background50.1 +/- 11.8bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.16
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.63
Offset:5
Orientation:forward strand
Alignment:CCTGGGCTGT-
-----GCTGTG

POL010.1_DCE_S_III/Jaspar

Match Rank:2
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:CCTGGGCTGT
----NGCTN-

PB0098.1_Zfp410_1/Jaspar

Match Rank:3
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CCTGGGCTGT----
TATTATGGGATGGATAA

GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:4
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CCTGGGCTGT--
CGTGGGTGGTCC

MA0596.1_SREBF2/Jaspar

Match Rank:5
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CCTGGGCTGT-
-ATGGGGTGAT

PH0157.1_Rhox11_1/Jaspar

Match Rank:6
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CCTGGGCTGT-------
AAGACGCTGTAAAGCGA

MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer

Match Rank:7
Score:0.55
Offset:4
Orientation:forward strand
Alignment:CCTGGGCTGT--
----GGCVGTTR

PH0158.1_Rhox11_2/Jaspar

Match Rank:8
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CCTGGGCTGT-------
AGGACGCTGTAAAGGGA

MA0146.2_Zfx/Jaspar

Match Rank:9
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----CCTGGGCTGT
GGGGCCGAGGCCTG-

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:10
Score:0.53
Offset:2
Orientation:forward strand
Alignment:CCTGGGCTGT
--TWGTCTGV