Information for motif40


Reverse Opposite:

p-value:1e-8
log p-value:-1.971e+01
Information Content per bp:1.701
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif3.72%
Number of Background Sequences with motif3.1
Percentage of Background Sequences with motif0.75%
Average Position of motif in Targets38.7 +/- 23.4bp
Average Position of motif in Background45.1 +/- 3.5bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0146.2_Zfx/Jaspar

Match Rank:1
Score:0.69
Offset:-6
Orientation:forward strand
Alignment:------GGGGCCTGKCAC
GGGGCCGAGGCCTG----

ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:2
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GGGGCCTGKCAC
-AGGCCTAG---

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GGGGCCTGKCAC
-AGGCCTNG---

PH0141.1_Pknox2/Jaspar

Match Rank:4
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GGGGCCTGKCAC---
AAGCACCTGTCAATAT

Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GGGGCCTGKCAC--
--TGTCTGDCACCT

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:6
Score:0.59
Offset:3
Orientation:forward strand
Alignment:GGGGCCTGKCAC---
---GSCTGTCACTCA

PB0180.1_Sp4_2/Jaspar

Match Rank:7
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GGGGCCTGKCAC-
CAAAGGCGTGGCCAG

KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer

Match Rank:8
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GGGGCCTGKCAC
DGGGYGKGGC--

MA0513.1_SMAD2::SMAD3::SMAD4/Jaspar

Match Rank:9
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GGGGCCTGKCAC--
-CTGTCTGTCACCT

MA0498.1_Meis1/Jaspar

Match Rank:10
Score:0.55
Offset:3
Orientation:forward strand
Alignment:GGGGCCTGKCAC------
---AGCTGTCACTCACCT