Information for motif5


Reverse Opposite:

p-value:1e-65
log p-value:-1.503e+02
Information Content per bp:1.617
Number of Target Sequences with motif81.0
Percentage of Target Sequences with motif14.34%
Number of Background Sequences with motif4.3
Percentage of Background Sequences with motif1.05%
Average Position of motif in Targets47.2 +/- 25.6bp
Average Position of motif in Background56.4 +/- 23.8bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0164.1_Smad3_2/Jaspar

Match Rank:1
Score:0.71
Offset:-5
Orientation:forward strand
Alignment:-----CCAGCCAGGCSS
TACGCCCCGCCACTCTG

Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer

Match Rank:2
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CCAGCCAGGCSS
YCCGCCCACGCN-

MA0472.1_EGR2/Jaspar

Match Rank:3
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CCAGCCAGGCSS
CCCCCGCCCACGCAC

Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:4
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CCAGCCAGGCSS---
SCAGYCADGCATGAC

Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CCAGCCAGGCSS
-CRCCCACGCA-

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CCAGCCAGGCSS
CCAGACAG----

PB0151.1_Myf6_2/Jaspar

Match Rank:7
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----CCAGCCAGGCSS
AGCAACAGCCGCACC-

GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:8
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CCAGCCAGGCSS
GGACCACCCACG---

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:9
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CCAGCCAGGCSS
TTCCCGCCWG----

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:10
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CCAGCCAGGCSS
BCAGACWA----