Information for motif11


Reverse Opposite:

p-value:1e-59
log p-value:-1.362e+02
Information Content per bp:1.701
Number of Target Sequences with motif49.0
Percentage of Target Sequences with motif0.16%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets24.8 +/- 11.1bp
Average Position of motif in Background22.3 +/- 11.7bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer

Match Rank:1
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TCAAAAGTTAAT
GGTTAAACATTAA-

MA0135.1_Lhx3/Jaspar

Match Rank:2
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:TCAAAAGTTAAT--
-GATTAATTAATTT

PH0080.1_Hoxd8/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TCAAAAGTTAAT-----
TAAATAATTAATGGCTA

MA0115.1_NR1H2::RXRA/Jaspar

Match Rank:4
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----TCAAAAGTTAAT
AAAGGTCAAAGGTCAAC

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:5
Score:0.60
Offset:6
Orientation:forward strand
Alignment:TCAAAAGTTAAT--
------GKTAATGR

PH0172.1_Tlx2/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TCAAAAGTTAAT-----
TAATTAATTAATAACTA

MA0153.1_HNF1B/Jaspar

Match Rank:7
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TCAAAAGTTAAT
TTAATATTTAAC

PH0154.1_Prrx1/Jaspar

Match Rank:8
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:TCAAAAGTTAAT-------
--ANNAGTTAATTAGTTAN

PH0035.1_Gsc/Jaspar

Match Rank:9
Score:0.59
Offset:2
Orientation:forward strand
Alignment:TCAAAAGTTAAT-------
--AATCGTTAATCCCTTTA

PH0124.1_Obox5_1/Jaspar

Match Rank:10
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:TCAAAAGTTAAT-------
--NANANTTAATCCCNNNN