Information for motif2


Reverse Opposite:

p-value:1e-676
log p-value:-1.559e+03
Information Content per bp:1.808
Number of Target Sequences with motif518.0
Percentage of Target Sequences with motif1.67%
Number of Background Sequences with motif8.4
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets24.9 +/- 10.9bp
Average Position of motif in Background28.6 +/- 11.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer

Match Rank:1
Score:0.91
Offset:-3
Orientation:reverse strand
Alignment:---CCACTAGRKGGC-----
TGGCCACCAGGTGGCACTNT

MA0139.1_CTCF/Jaspar

Match Rank:2
Score:0.90
Offset:-3
Orientation:forward strand
Alignment:---CCACTAGRKGGC----
TGGCCACCAGGGGGCGCTA

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.89
Offset:-1
Orientation:reverse strand
Alignment:-CCACTAGRKGGC-------
GCCASCAGGGGGCGCYVNNG

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:4
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CCACTAGRKGGC
--AACAGATGGC

MA0461.1_Atoh1/Jaspar

Match Rank:5
Score:0.61
Offset:4
Orientation:forward strand
Alignment:CCACTAGRKGGC
----CAGATGGC

MA0095.2_YY1/Jaspar

Match Rank:6
Score:0.60
Offset:3
Orientation:forward strand
Alignment:CCACTAGRKGGC---
---CAAGATGGCGGC

YY1(Zf)/Promoter/Homer

Match Rank:7
Score:0.59
Offset:3
Orientation:forward strand
Alignment:CCACTAGRKGGC---
---CAAGATGGCGGC

MA0130.1_ZNF354C/Jaspar

Match Rank:8
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CCACTAGRKGGC
ATCCAC--------

PB0076.1_Sp4_1/Jaspar

Match Rank:9
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CCACTAGRKGGC------
-NNNAAGGGGGCGGGNNN

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:10
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CCACTAGRKGGC
VNAVCAGCTGGC