Information for motif25


Reverse Opposite:

p-value:1e-26
log p-value:-6.211e+01
Information Content per bp:1.882
Number of Target Sequences with motif40.0
Percentage of Target Sequences with motif0.13%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets25.1 +/- 11.8bp
Average Position of motif in Background25.1 +/- 11.5bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:1
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TATTCGCG
CTAATKGV-

PH0041.1_Hmx1/Jaspar

Match Rank:2
Score:0.63
Offset:-6
Orientation:reverse strand
Alignment:------TATTCGCG---
ANNCATTAATTGCTNGN

PB0138.1_Irf4_2/Jaspar

Match Rank:3
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TATTCGCG-----
AGTATTCTCGGTTGC

PH0063.1_Hoxb8/Jaspar

Match Rank:4
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----TATTCGCG---
TTTATTAATTGCNNGN

PH0043.1_Hmx3/Jaspar

Match Rank:5
Score:0.59
Offset:-6
Orientation:reverse strand
Alignment:------TATTCGCG---
ATTNNTTAATTGCTTGT

MA0125.1_Nobox/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TATTCGCG
TAATTGGT

PB0185.1_Tcf1_2/Jaspar

Match Rank:7
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--TATTCGCG----
NNTAATCCNGNCNN

E2F(E2F)/Cell-Cycle-Exp/Homer

Match Rank:8
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TATTCGCG----
TTTTCGCGCGAA

PB0140.1_Irf6_2/Jaspar

Match Rank:9
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--TATTCGCG-----
ACCACTCTCGGTCAC

MA0075.1_Prrx2/Jaspar

Match Rank:10
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TATTCGCG
TAATT---