Information for motif28


Reverse Opposite:

p-value:1e-21
log p-value:-5.038e+01
Information Content per bp:1.899
Number of Target Sequences with motif35.0
Percentage of Target Sequences with motif0.11%
Number of Background Sequences with motif4.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets25.7 +/- 12.8bp
Average Position of motif in Background22.7 +/- 13.0bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0067.1_Hoxc12/Jaspar

Match Rank:1
Score:0.86
Offset:-6
Orientation:reverse strand
Alignment:------TTACGACC---
GNNNTTTTACGACCTNA

PH0077.1_Hoxd12/Jaspar

Match Rank:2
Score:0.85
Offset:-6
Orientation:reverse strand
Alignment:------TTACGACC---
NNNATTTTACGACNNTN

PH0065.1_Hoxc10/Jaspar

Match Rank:3
Score:0.84
Offset:-5
Orientation:reverse strand
Alignment:-----TTACGACC---
ANNTTTTACGACNTNN

PH0076.1_Hoxd11/Jaspar

Match Rank:4
Score:0.84
Offset:-6
Orientation:reverse strand
Alignment:------TTACGACC---
ANNATTTTACGACNTNA

PH0066.1_Hoxc11/Jaspar

Match Rank:5
Score:0.83
Offset:-5
Orientation:reverse strand
Alignment:-----TTACGACC---
NNNTTTTACGACNTTN

PH0047.1_Hoxa11/Jaspar

Match Rank:6
Score:0.82
Offset:-5
Orientation:reverse strand
Alignment:-----TTACGACC---
NNGTTTTACGACTTTA

PB0143.1_Klf7_2/Jaspar

Match Rank:7
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----TTACGACC-----
AAGCATACGCCCAACTT

PB0032.1_IRC900814_1/Jaspar

Match Rank:8
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--TTACGACC------
ATTTACGACAAATAGC

PH0048.1_Hoxa13/Jaspar

Match Rank:9
Score:0.70
Offset:-5
Orientation:reverse strand
Alignment:-----TTACGACC---
ANATTTTACGAGNNNN

PH0068.1_Hoxc13/Jaspar

Match Rank:10
Score:0.69
Offset:-5
Orientation:reverse strand
Alignment:-----TTACGACC---
NAATTTTACGAGNTNN