Information for motif8


Reverse Opposite:

p-value:1e-78
log p-value:-1.808e+02
Information Content per bp:1.953
Number of Target Sequences with motif73.0
Percentage of Target Sequences with motif0.24%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets25.6 +/- 11.7bp
Average Position of motif in Background27.5 +/- 12.3bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0512.1_Rxra/Jaspar

Match Rank:1
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-AGAGGGCAGC
CAAAGGTCAGA

MA0597.1_THAP1/Jaspar

Match Rank:2
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:AGAGGGCAGC
TNNGGGCAG-

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-AGAGGGCAGC
CAAAGGTCAG-

YY1(Zf)/Promoter/Homer

Match Rank:4
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--AGAGGGCAGC
CAAGATGGCGGC

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer

Match Rank:5
Score:0.64
Offset:-8
Orientation:reverse strand
Alignment:--------AGAGGGCAGC--
TGGCCACCAGGTGGCACTNT

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.64
Offset:-6
Orientation:reverse strand
Alignment:------AGAGGGCAGC----
GCCASCAGGGGGCGCYVNNG

MA0095.2_YY1/Jaspar

Match Rank:7
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--AGAGGGCAGC
CAAGATGGCGGC

MA0065.2_PPARG::RXRA/Jaspar

Match Rank:8
Score:0.63
Offset:-7
Orientation:forward strand
Alignment:-------AGAGGGCAGC
GTAGGGCAAAGGTCA--

RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:9
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------AGAGGGCAGC
TAGGGCAAAGGTCA--

MA0139.1_CTCF/Jaspar

Match Rank:10
Score:0.61
Offset:-8
Orientation:forward strand
Alignment:--------AGAGGGCAGC-
TGGCCACCAGGGGGCGCTA