Information for motif2


Reverse Opposite:

p-value:1e-112
log p-value:-2.585e+02
Information Content per bp:1.569
Number of Target Sequences with motif108.0
Percentage of Target Sequences with motif9.87%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.53%
Average Position of motif in Targets48.0 +/- 26.8bp
Average Position of motif in Background55.8 +/- 24.6bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:1
Score:0.95
Offset:0
Orientation:forward strand
Alignment:AAACCACAVN
AAACCACANN

MA0002.2_RUNX1/Jaspar

Match Rank:2
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:AAACCACAVN-
AAACCACAGAN

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:3
Score:0.94
Offset:-1
Orientation:forward strand
Alignment:-AAACCACAVN
NAAACCACAG-

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:4
Score:0.93
Offset:0
Orientation:reverse strand
Alignment:AAACCACAVN
AAACCACAGC

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:5
Score:0.92
Offset:-1
Orientation:forward strand
Alignment:-AAACCACAVN-
NWAACCACADNN

MA0511.1_RUNX2/Jaspar

Match Rank:6
Score:0.91
Offset:-1
Orientation:reverse strand
Alignment:-AAACCACAVN----
CAAACCACAAACCCC

MA0483.1_Gfi1b/Jaspar

Match Rank:7
Score:0.71
Offset:0
Orientation:forward strand
Alignment:AAACCACAVN-
AAATCACAGCA

MA0479.1_FOXH1/Jaspar

Match Rank:8
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---AAACCACAVN
TCCAATCCACA--

MA0130.1_ZNF354C/Jaspar

Match Rank:9
Score:0.68
Offset:1
Orientation:forward strand
Alignment:AAACCACAVN
-ATCCAC---

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--AAACCACAVN
SSAATCCACANN